If more than 50 genes/sequences are provided as input, then the associated running time can take some time. Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes. After processing you will be send an email with a link to the created phylogenetic tree.
The selection modi are exclusive: please choose either Gene selection or Species selection.
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000856', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p00010' => 'bna', 'A03p04160' => 'bna', 'A03p17160' => 'bna', 'A04p23370' => 'bna', 'A05p14860' => 'bna', 'A08p37020' => 'bna', 'A09p08050' => 'bna', 'A09p66800' => 'bna', 'A09p67940' => 'bna', 'A10p02680' => 'bna', 'A10p05320' => 'bna', 'Aa31LG1G20560' => 'aar', 'Aa31LG1G20610' => 'aar', 'Aa31LG1G7810' => 'aar', 'Aa31LG5G3590' => 'aar', 'Aa31LG5G6140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3819' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4683' => 'aag', 'Actinidia04480' => 'ach', 'Actinidia05466' => 'ach', 'Actinidia08445' => 'ach', 'Actinidia21170' => 'ach', 'Actinidia24812' => 'ach', 'Actinidia24951' => 'ach', 'Actinidia40088' => 'ach', 'Ah.02g111660' => 'amhyb', 'Ah.11g048900' => 'amhyb', 'Ah.11g049910' => 'amhyb', 'AL1G13870' => 'aly', 'AL1G13880' => 'aly', 'AL1G16760' => 'aly', 'AL390U10020' => 'aly', 'AL4G25520' => 'aly', 'AL6G19890' => 'aly', 'AL6G19900' => 'aly', 'AL6G19910' => 'aly', 'AL8G40100' => 'aly', 'Aqoxy2G03562' => 'aox', 'Aqoxy5G00316' => 'aox', 'Aqoxy5G00926' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1628KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1H403S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2FU6SJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.882I6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8YRY2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YN1SN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AF70II' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZA8L1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F916KL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHRD8H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KTZ8QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S22EMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8M29T' => 'arhy', 'AT1G04270' => 'ath', 'AT1G04280' => 'ath', 'AT1G06750' => 'ath', 'AT1G33850' => 'ath', 'AT2G30630' => 'ath', 'AT5G09490' => 'ath', 'AT5G09500' => 'ath', 'AT5G09510' => 'ath', 'AT5G43640' => 'ath', 'AT5G63070' => 'ath', 'ATR0605G315' => 'atr', 'Atru.chr11.175' => 'acertr', 'Atru.chr11.653' => 'acertr', 'Atru.chr3.1616' => 'acertr', 'Atru.chr4.2230' => 'acertr', 'Atru.chr4.2232' => 'acertr', 'Atru.chr5.1598' => 'acertr', 'Atru.chr5.1600' => 'acertr', 'Atru.chr5.2188' => 'acertr', 'AUR62008326' => 'cqu', 'AUR62011922' => 'cqu', 'AUR62011924' => 'cqu', 'AUR62021771' => 'cqu', 'AUR62032237' => 'cqu', 'AUR62032240' => 'cqu', 'BcaB01g05572' => 'bca', 'BcaB02g10337' => 'bca', 'BcaB04g19944' => 'bca', 'BcaB05g21548' => 'bca', 'BcaB05g21549' => 'bca', 'BcaB05g23227' => 'bca', 'BcaB06g26256' => 'bca', 'BcaB06g26257' => 'bca', 'BcaB06g28379' => 'bca', 'BcaC02g11159' => 'bca', 'BcaC03g13258' => 'bca', 'BcaC03g13259' => 'bca', 'BcaC05g24456' => 'bca', 'BcaC05g24457' => 'bca', 'BcaC07g36922' => 'bca', 'BcaC07g36923' => 'bca', 'BcaC07g42050' => 'bca', 'BcaC07g42176' => 'bca', 'BcaC07g42195' => 'bca', 'BcaC07g42196' => 'bca', 'BcaNung06674' => 'bca', 'BolC2t06351H' => 'bol', 'BolC2t06352H' => 'bol', 'BolC3t12993H' => 'bol', 'BolC4t23525H' => 'bol', 'BolC4t27475H' => 'bol', 'BolC5t29025H' => 'bol', 'BolC5t29026H' => 'bol', 'BolC8t46898H' => 'bol', 'BolC8t46899H' => 'bol', 'BolC8t52630H' => 'bol', 'BolC8t52765H' => 'bol', 'BolC9t53824H' => 'bol', 'BraA03t09760Z' => 'bra', 'BraA03t10990Z' => 'bra', 'BraA05t20413Z' => 'bra', 'BraA08t35602Z' => 'bra', 'BraA09t36458Z' => 'bra', 'BraA09t42018Z' => 'bra', 'BraA09t42129Z' => 'bra', 'BraA10t42536Z' => 'bra', 'BraA10t42537Z' => 'bra', 'C01p10690' => 'bna', 'C02p03890' => 'bna', 'C02p03900' => 'bna', 'C03p04620' => 'bna', 'C04p19870' => 'bna', 'C04p59670' => 'bna', 'C05p02460' => 'bna', 'C05p02470' => 'bna', 'C08p00980' => 'bna', 'C08p00990' => 'bna', 'C08p51030' => 'bna', 'C08p52360' => 'bna', 'C09p09120' => 'bna', 'CAN.G19.15' => 'can', 'CAN.G251.10' => 'can', 'CAN.G251.9' => 'can', 'CAN.G398.24' => 'can', 'CAN.G410.32' => 'can', 'CAN.G881.2' => 'can', 'CANSAT01G3025' => 'cansat', 'CANSAT78G1211' => 'cansat', 'CANSAT78G1218' => 'cansat', 'CANSAT78G1521' => 'cansat', 'CANSAT78G1670' => 'cansat', 'CARHR003600' => 'chi', 'CARHR003610' => 'chi', 'CARHR006290' => 'chi', 'CARHR006430' => 'chi', 'CARHR124110' => 'chi', 'CARHR203870' => 'chi', 'CARHR203880' => 'chi', 'CARHR203890' => 'chi', 'CARHR276880' => 'chi', 'Carub.0001s0346' => 'cru', 'Carub.0001s0347' => 'cru', 'Carub.0001s0607' => 'cru', 'Carub.0003s2768' => 'cru', 'Carub.0003s2769' => 'cru', 'Carub.0004s1178' => 'cru', 'Carub.0006s0806' => 'cru', 'Carub.0006s0807' => 'cru', 'Carub.0006s0808' => 'cru', 'Carub.0008s0501' => 'cru', 'Carub.0008s2379' => 'cru', 'Ca_08655_v3' => 'car', 'Ca_08922_v3' => 'car', 'Ca_08923_v3' => 'car', 'Ca_09119_v3' => 'car', 'Ca_09703_v3' => 'car', 'Ca_09705_v3' => 'car', 'Ca_09835_v3' => 'car', 'Ca_26403_v3' => 'car', 'Ca_30719_v3' => 'car', 'CBR_g17958' => 'cbr', 'CBR_g40516' => 'cbr', 'Cc00_g05350' => 'ccan', 'Cc01_g18690' => 'ccan', 'Cc03_g04830' => 'ccan', 'Cc03_g04850' => 'ccan', 'CDE02G4469' => 'cde', 'CDE06G0883' => 'cde', 'CDE06G1295' => 'cde', 'CDE06G1390' => 'cde', 'CDE07G0584' => 'cde', 'CDE07G1084' => 'cde', 'CDE08G1259' => 'cde', 'Cfa002341' => 'cfa', 'Cfa024337' => 'cfa', 'Ciclev10004749m.g' => 'ccl', 'Ciclev10006127m.g' => 'ccl', 'Ciclev10019720m.g' => 'ccl', 'Ciclev10022652m.g' => 'ccl', 'CiPaw.01G190400' => 'cil', 'CiPaw.01G190500' => 'cil', 'CiPaw.02G116400' => 'cil', 'CiPaw.02G116500' => 'cil', 'CiPaw.04G183000' => 'cil', 'CiPaw.04G183300' => 'cil', 'ClCG05G004610' => 'cla', 'ClCG05G004620' => 'cla', 'ClCG06G006730' => 'cla', 'ClCG06G006740' => 'cla', 'ClCG11G003690' => 'cla', 'COL.COLO4_08276' => 'col', 'COL.COLO4_08277' => 'col', 'COL.COLO4_15787' => 'col', 'COL.COLO4_15789' => 'col', 'Cpa.g.c44815' => 'cpa', 'Cpa.g.sc52.144' => 'cpa', 'Cpa.g.sc58.46' => 'cpa', 'Cpa.g.sc58.47' => 'cpa', 'Cre08.g360900' => 'cre', 'CsaV3_2G013030' => 'csa', 'CsaV3_2G013050' => 'csa', 'CsaV3_2G015620' => 'csa', 'CsaV3_3G012590' => 'csa', 'CsaV3_3G012600' => 'csa', 'CSS0001641' => 'camsi', 'CSS0008310' => 'camsi', 'CSS0013011' => 'camsi', 'CSS0017147' => 'camsi', 'CSS0022970' => 'camsi', 'CSS0025655' => 'camsi', 'CSS0028665' => 'camsi', 'CSS0029117' => 'camsi', 'CSS0032024' => 'camsi', 'CSS0039681' => 'camsi', 'CSS0046516' => 'camsi', 'CSS0050307' => 'camsi', 'DCAR_005871' => 'dca', 'DCAR_007342' => 'dca', 'DCAR_024228' => 'dca', 'DCAR_027277' => 'dca', 'DCAR_030718' => 'dca', 'Dinv20287' => 'din', 'Dinv22461' => 'din', 'Dinv22464' => 'din', 'Dinv29912' => 'din', 'Dinv29913' => 'din', 'Dinv34580' => 'din', 'Dinv34582' => 'din', 'Dinv44632' => 'din', 'Duzib052G0266' => 'dzi', 'Duzib133G0907' => 'dzi', 'Duzib133G1034' => 'dzi', 'Duzib138G0207' => 'dzi', 'Duzib138G0491' => 'dzi', 'Duzib151G0812' => 'dzi', 'Duzib151G1166' => 'dzi', 'Duzib168G0192' => 'dzi', 'Duzib211G0077' => 'dzi', 'Duzib212G0429' => 'dzi', 'Duzib212G0472' => 'dzi', 'ECA233G2617' => 'eca', 'ECA236G4188' => 'eca', 'ECA240G0936' => 'eca', 'ECA240G1129' => 'eca', 'ECA247G0623' => 'eca', 'EL10Ac5g10451' => 'bvu', 'EL10Ac5g10453' => 'bvu', 'EL10Ac5g10894' => 'bvu', 'Eucgr.H00192' => 'egr', 'Eucgr.H00193' => 'egr', 'Eucgr.H00194' => 'egr', 'Eucgr.J01562' => 'egr', 'Eucgr.K03301' => 'egr', 'FAN02G0632' => 'fan', 'FAN05G5378' => 'fan', 'FAN09G3247' => 'fan', 'FAN12G0435' => 'fan', 'FAN12G2426' => 'fan', 'FAN14G1707' => 'fan', 'FAN14G4725' => 'fan', 'FAN15G2071' => 'fan', 'FAN17G3065' => 'fan', 'FAN19G1376' => 'fan', 'FAN20G0354' => 'fan', 'FAN20G2429' => 'fan', 'FAN20G2658' => 'fan', 'FAN24G2343' => 'fan', 'FAN27G2362' => 'fan', 'FAN28G1765' => 'fan', 'FvH4_1g16020' => 'fve', 'FvH4_2g04890' => 'fve', 'FvH4_2g22270' => 'fve', 'FvH4_4g02630' => 'fve', 'FvH4_4g02640' => 'fve', 'FvH4_6g02650' => 'fve', 'Glyma.02G140600' => 'gma', 'Glyma.03G159900' => 'gma', 'Glyma.05G234800' => 'gma', 'Glyma.07G269600' => 'gma', 'Glyma.08G042300' => 'gma', 'Glyma.10G033500' => 'gma', 'Glyma.10G185200' => 'gma', 'Glyma.17G004300' => 'gma', 'Glyma.19G161900' => 'gma', 'Glyma.20G205100' => 'gma', 'Glyma.20G205200' => 'gma', 'Gohir.A01G139101' => 'ghi', 'Gohir.A02G035600' => 'ghi', 'Gohir.A02G117901' => 'ghi', 'Gohir.A07G210100' => 'ghi', 'Gohir.A07G210200' => 'ghi', 'Gohir.A08G061100' => 'ghi', 'Gohir.A09G223000' => 'ghi', 'Gohir.A09G223100' => 'ghi', 'Gohir.A10G113900' => 'ghi', 'Gohir.A10G114000' => 'ghi', 'Gohir.D02G042300' => 'ghi', 'Gohir.D07G216100' => 'ghi', 'Gohir.D07G216200' => 'ghi', 'Gohir.D08G070400' => 'ghi', 'Gohir.D09G225000' => 'ghi', 'Gohir.D09G225100' => 'ghi', 'Gohir.D10G152300' => 'ghi', 'Gohir.D10G153200' => 'ghi', 'Gohir.D11G133701' => 'ghi', 'Gorai.004G074100' => 'gra', 'Gorai.005G046800' => 'gra', 'Gorai.006G246500' => 'gra', 'Gorai.006G246600' => 'gra', 'Gorai.007G142900' => 'gra', 'Gorai.011G171000' => 'gra', 'Gorai.011G171100' => 'gra', 'Gorai.013G104300' => 'gra', 'Gorai.013G104400' => 'gra', 'GSVIVG01000754001' => 'vvi', 'GSVIVG01000756001' => 'vvi', 'GSVIVG01010903001' => 'vvi', 'GSVIVG01017623001' => 'vvi', 'GSVIVG01018113001' => 'vvi', 'GSVIVG01018116001' => 'vvi', 'GSVIVG01018118001' => 'vvi', 'HanXRQChr03g0076211' => 'han', 'HanXRQChr03g0092431' => 'han', 'HanXRQChr03g0092441' => 'han', 'HanXRQChr03g0092591' => 'han', 'HanXRQChr03g0092671' => 'han', 'HanXRQChr03g0092681' => 'han', 'HanXRQChr03g0092691' => 'han', 'HanXRQChr03g0092701' => 'han', 'HanXRQChr03g0092721' => 'han', 'HanXRQChr03g0092731' => 'han', 'HanXRQChr04g0113681' => 'han', 'HanXRQChr10g0281371' => 'han', 'HanXRQChr11g0337141' => 'han', 'HanXRQChr13g0424521' => 'han', 'HanXRQChr13g0424531' => 'han', 'HanXRQChr13g0424541' => 'han', 'HanXRQChr16g0498221' => 'han', 'Haze_04377' => 'cav', 'Haze_11298' => 'cav', 'Haze_24547' => 'cav', 'Haze_24550' => 'cav', 'Haze_26587' => 'cav', 'Hma1.2p1_0650F.1_g195410' => 'hma', 'Hma1.2p1_0893F.1_g233470' => 'hma', 'HPP92_006508' => 'vpl', 'HPP92_024780' => 'vpl', 'Hund02688' => 'sun', 'Hund09380' => 'sun', 'Hund09381' => 'sun', 'Hund09832' => 'sun', 'Hund09833' => 'sun', 'Hund11351' => 'sun', 'Hund11513' => 'sun', 'Lalb_Chr06g0162591' => 'lal', 'Lalb_Chr06g0162601' => 'lal', 'Lalb_Chr06g0169321' => 'lal', 'Lalb_Chr09g0330951' => 'lal', 'Lalb_Chr16g0387631' => 'lal', 'Lalb_Chr21g0306241' => 'lal', 'Lalb_Chr25g0290051' => 'lal', 'Lalb_Chr25g0290061' => 'lal', 'Lalb_Chr25g0290071' => 'lal', 'Lj1g0003876' => 'lja', 'Lj1P1207T36' => 'lonja', 'Lj2C1156G12' => 'lonja', 'Lj3A793G39' => 'lonja', 'Lj3C580G2' => 'lonja', 'Lj3C780G2' => 'lonja', 'Lj3C780T4' => 'lonja', 'Lj3C793G9' => 'lonja', 'Lj4g0012960' => 'lja', 'Lj5g0021252' => 'lja', 'Lj5g0021484' => 'lja', 'Lj5g0024528' => 'lja', 'Lj6A399T12' => 'lonja', 'Lj6A656G65' => 'lonja', 'Lsat_1_v5_gn_3_125500' => 'lsa', 'Lsat_1_v5_gn_3_125540' => 'lsa', 'Lsat_1_v5_gn_5_72701' => 'lsa', 'Lsat_1_v5_gn_8_91560' => 'lsa', 'Lsat_1_v5_gn_9_9640' => 'lsa', 'Manes.01G200600' => 'mes', 'Manes.01G200700' => 'mes', 'Manes.03G168900' => 'mes', 'Manes.03G169000' => 'mes', 'Manes.05G085801' => 'mes', 'Manes.05G086200' => 'mes', 'Manes.15G036700' => 'mes', 'Manes.15G036900' => 'mes', 'Mapoly0004s0172' => 'mpo', 'Mapoly0023s0001' => 'mpo', 'Mapoly0142s0012' => 'mpo', 'MBI01_g32854_MAGBIO' => 'mbi', 'MBI11_g24427_MAGBIO' => 'mbi', 'MBI11_g47319_MAGBIO' => 'mbi', 'MCO01G433' => 'mco', 'MD00G1187800' => 'mdo', 'MD04G1226500' => 'mdo', 'MD05G1203900' => 'mdo', 'MD10G1191100' => 'mdo', 'MD12G1243500' => 'mdo', 'MD13G1207000' => 'mdo', 'MD13G1207100' => 'mdo', 'MD16G1208600' => 'mdo', 'Medtr1g050352' => 'mtr', 'Medtr1g070385' => 'mtr', 'Medtr1g070450' => 'mtr', 'Medtr1g075200' => 'mtr', 'Medtr1g075250' => 'mtr', 'Medtr1g075260' => 'mtr', 'Medtr1g475250' => 'mtr', 'Medtr4g075450' => 'mtr', 'Medtr7g096300' => 'mtr', 'Medtr8g105110' => 'mtr', 'MELO3C006470.2' => 'cme', 'MELO3C006471.2' => 'cme', 'MELO3C020772.2' => 'cme', 'MELO3C026780.2' => 'cme', 'MELO3C026781.2' => 'cme', 'Migut.D00390' => 'egut', 'Migut.G00435' => 'egut', 'Migut.G00436' => 'egut', 'Migut.G00718' => 'egut', 'MSTRG.21891' => 'ama', 'MSTRG.26910' => 'ama', 'MSTRG.4099' => 'ama', 'MSTRG.9925' => 'ama', 'Nitab4.5_0000165g0010' => 'nta', 'Nitab4.5_0000209g0180' => 'nta', 'Nitab4.5_0000244g0440' => 'nta', 'Nitab4.5_0000525g0220' => 'nta', 'Nitab4.5_0001597g0020' => 'nta', 'Nitab4.5_0001878g0040' => 'nta', 'Nitab4.5_0001878g0060' => 'nta', 'Nitab4.5_0002838g0100' => 'nta', 'Nitab4.5_0002838g0120' => 'nta', 'Nitab4.5_0004798g0030' => 'nta', 'Nitab4.5_0005420g0010' => 'nta', 'Nitab4.5_0005507g0010' => 'nta', 'Nitab4.5_0005574g0020' => 'nta', 'Nitab4.5_0005838g0010' => 'nta', 'Nitab4.5_0010580g0020' => 'nta', 'Nn1g02599' => 'nnu', 'Nn1g02608' => 'nnu', 'Nn3g17742' => 'nnu', 'Nn3g19534' => 'nnu', 'Nn3g19535' => 'nnu', 'Oeu008790.1' => 'oeu', 'Oeu008792.1' => 'oeu', 'Oeu032590.1' => 'oeu', 'Oeu035349.1' => 'oeu', 'Oeu049791.1' => 'oeu', 'Os01g0774500' => 'osa', 'Os03g0628800' => 'osa', 'Os03g0798600' => 'osa', 'Os05g0508800' => 'osa', 'Peaxi162Scf00036g02018' => 'pax', 'Peaxi162Scf00578g00032' => 'pax', 'Peaxi162Scf00578g00317' => 'pax', 'Peaxi162Scf00785g00114' => 'pax', 'Peaxi162Scf00813g00119' => 'pax', 'Peaxi162Scf00906g00227' => 'pax', 'PGR004G0875' => 'pgr', 'PGR004G2424' => 'pgr', 'PGR031G1239' => 'pgr', 'PGR031G2474' => 'pgr', 'PGR044G0423' => 'pgr', 'PGSC0003DMG400001128' => 'stu', 'PGSC0003DMG400007336' => 'stu', 'PGSC0003DMG400016318' => 'stu', 'PGSC0003DMG400016319' => 'stu', 'PGSC0003DMG400018074' => 'stu', 'Phvul.001G157700' => 'pvu', 'Phvul.002G148550' => 'pvu', 'Phvul.002G320200' => 'pvu', 'Phvul.003G089200' => 'pvu', 'Phvul.007G126000' => 'pvu', 'Phvul.007G126100' => 'pvu', 'Phvul.007G178000' => 'pvu', 'Phvul.007G178200' => 'pvu', 'Potri.002G043000' => 'ptr', 'Potri.002G043200' => 'ptr', 'Potri.003G123750' => 'ptr', 'Potri.005G055401' => 'ptr', 'Potri.005G219700' => 'ptr', 'Potri.005G220000' => 'ptr', 'Potri.008G161901' => 'ptr', 'Potri.008G162000' => 'ptr', 'Potri.008G162400' => 'ptr', 'Potri.010G076900' => 'ptr', 'Pp3c12_9180' => 'ppa', 'Pp3c13_19770' => 'ppa', 'Pp3c14_22950' => 'ppa', 'Pp3c16_12160' => 'ppa', 'Pp3c27_7820' => 'ppa', 'Pp3c2_3490' => 'ppa', 'Pp3c3_23700' => 'ppa', 'Pp3c3_36520' => 'ppa', 'Pp3c4_15250' => 'ppa', 'PRCOL_00007002' => 'pco', 'Prupe.1G030600' => 'ppe', 'Prupe.1G030700' => 'ppe', 'Prupe.6G345200' => 'ppe', 'Prupe.8G230300' => 'ppe', 'Prupe.8G230500' => 'ppe', 'Psat3g059600' => 'psa', 'Psat5g200920' => 'psa', 'Psat6g056440' => 'psa', 'Psat6g057360' => 'psa', 'Psat6g134120' => 'psa', 'Psat6g134160' => 'psa', 'Psat7g008640' => 'psa', 'Psat7g185240' => 'psa', 'PSO017G1330' => 'pso', 'PSO063G6097' => 'pso', 'PSO170G0835' => 'pso', 'PSO170G2499' => 'pso', 'PSO210G5058' => 'pso', 'PSO210G6154' => 'pso', 'PSO585G0031' => 'pso', 'PSO832G0264' => 'pso', 'PSO832G4288' => 'pso', 'QL03p027355' => 'qlo', 'QL03p027430' => 'qlo', 'QL04p081380' => 'qlo', 'QL06p015642' => 'qlo', 'QL06p015650' => 'qlo', 'QL06p015686' => 'qlo', 'QL12p042927' => 'qlo', 'QL93p1863_0035' => 'qlo', 'RcHm_v2.0_Chr3g0450581' => 'rch', 'RcHm_v2.0_Chr4g0390371' => 'rch', 'RcHm_v2.0_Chr4g0390381' => 'rch', 'RcHm_v2.0_Chr4g0390491' => 'rch', 'RcHm_v2.0_Chr4g0390501' => 'rch', 'RcHm_v2.0_Chr6g0289231' => 'rch', 'Rhsim04G0190400' => 'rsi', 'Rhsim04G0190500' => 'rsi', 'Rhsim04G0190600' => 'rsi', 'Rhsim13G0031400' => 'rsi', 'Rhsim13G0165600' => 'rsi', 'RhsimUnG0114600' => 'rsi', 'RhsimUnG0114700' => 'rsi', 'Sabra02G0034800' => 'sbr', 'Sabra02G0035100' => 'sbr', 'Sabra05G0168600' => 'sbr', 'Sabra05G0168800' => 'sbr', 'Sabra08G0123700' => 'sbr', 'Sabra10G0031900' => 'sbr', 'Sabra13G0039000' => 'sbr', 'SalBow2G0782' => 'sbo', 'SalBow2G1403' => 'sbo', 'SalBow4G0074' => 'sbo', 'SalBow4G2635' => 'sbo', 'SalBow5G3010' => 'sbo', 'Sc05g0000870' => 'sci', 'Sc05g0000890' => 'sci', 'Sc13g0005000' => 'sci', 'Sc13g0005030' => 'sci', 'Sc19g0003790' => 'sci', 'Sc19g0003800' => 'sci', 'Sed0003467' => 'sed', 'Sed0009355' => 'sed', 'Sed0009894' => 'sed', 'Sed0011972' => 'sed', 'Sed0021483' => 'sed', 'Sed0021750' => 'sed', 'Sed0026279' => 'sed', 'SEGI_05312' => 'sgi', 'SEGI_10112' => 'sgi', 'SEGI_15835' => 'sgi', 'SEGI_30386' => 'sgi', 'SEGI_34122' => 'sgi', 'SEGI_35063' => 'sgi', 'SGA_v2.0_scaffold101G29794' => 'sas', 'SGA_v2.0_scaffold1G00573' => 'sas', 'SGA_v2.0_scaffold79G25637' => 'sas', 'SGA_v2.0_scaffold88G27283' => 'sas', 'SGA_v2.0_scaffold88G27285' => 'sas', 'SGA_v2.0_scaffold88G27331' => 'sas', 'SHI09937' => 'shi', 'SMO119G0302' => 'smo', 'SMO137G0231' => 'smo', 'SMO367G1151' => 'smo', 'Solyc02g082000.3' => 'sly', 'Solyc06g031670.3' => 'sly', 'Solyc06g053810.3' => 'sly', 'Solyc07g025457.1' => 'sly', 'Solyc08g059740.1' => 'sly', 'Solyc08g059750.3' => 'sly', 'Solyc09g083370.3' => 'sly', 'Solyc12g038950.3' => 'sly', 'Sopen02g026630' => 'spe', 'Sopen06g018930' => 'spe', 'Sopen06g018940' => 'spe', 'Sopen08g009460' => 'spe', 'Sopen09g032290' => 'spe', 'Sp1g03080' => 'spa', 'Sp1g03090' => 'spa', 'Sp1g05480' => 'spa', 'Sp2g07860' => 'spa', 'Sp2g08430' => 'spa', 'Sp2g08440' => 'spa', 'Sp2g26200' => 'spa', 'Sp4g13170' => 'spa', 'Sp6g33840' => 'spa', 'SpUn1204_0010' => 'spa', 'TAR365G0908' => 'tar', 'TAR381G1270' => 'tar', 'TAR381G1651' => 'tar', 'TAR625G1131' => 'tar', 'TAR633G0962' => 'tar', 'TAR633G1729' => 'tar', 'TAR633G1864' => 'tar', 'TAR636G0221' => 'tar', 'TAR636G0314' => 'tar', 'TAR636G3202' => 'tar', 'THA.LOC104800805' => 'tha', 'THA.LOC104801096' => 'tha', 'THA.LOC104801555' => 'tha', 'THA.LOC104808491' => 'tha', 'THA.LOC104808595' => 'tha', 'THA.LOC104815985' => 'tha', 'THA.LOC104822250' => 'tha', 'THA.LOC104826071' => 'tha', 'Thecc.01G265200' => 'tca', 'Thecc.01G265300' => 'tca', 'Thecc.01G265700' => 'tca', 'Thecc.03G109100' => 'tca', 'Thecc.04G245900' => 'tca', 'Thecc.04G246000' => 'tca', 'Thhalv10003334m.g' => 'esa', 'Thhalv10005508m.g' => 'esa', 'Thhalv10005643m.g' => 'esa', 'Thhalv10007316m.g' => 'esa', 'Thhalv10009006m.g' => 'esa', 'Thhalv10009309m.g' => 'esa', 'Thhalv10014917m.g' => 'esa', 'Thhalv10014919m.g' => 'esa', 'Thhalv10015393m.g' => 'esa', 'Thhalv10016515m.g' => 'esa', 'Thhalv10029242m.g' => 'esa', 'TPR.G16654' => 'tpr', 'TPR.G20589' => 'tpr', 'TPR.G23029' => 'tpr', 'TPR.G27731' => 'tpr', 'TPR.G28889' => 'tpr', 'TPR.G28899' => 'tpr', 'TPR.G30846' => 'tpr', 'TPR.G5452' => 'tpr', 'TPR.G5713' => 'tpr', 'TPR.G9046' => 'tpr', 'TPR.G9061' => 'tpr', 'TWI09G1075' => 'twi', 'TWI12G0806' => 'twi', 'TWI18G0108' => 'twi', 'TWI53G1361' => 'twi', 'TWI73G0185' => 'twi', 'TWI73G0427' => 'twi', 'unitig_37.g12001' => 'ugi', 'unitig_747.g21660' => 'ugi', 'unitig_748.g7232' => 'ugi', 'unitig_748.g7315' => 'ugi', 'unitig_85.g27262' => 'ugi', 'unitig_92.g28220' => 'ugi', 'vmacro02632' => 'vma', 'vmacro08410' => 'vma', 'vmacro08411' => 'vma', 'vmacro15407' => 'vma', 'VMungo0251G3619' => 'vmu', 'VMungo0720G1204' => 'vmu', 'VMungo0720G1918' => 'vmu', 'VMungo0720G2387' => 'vmu', 'VMungo0720G2961' => 'vmu', 'VMungo1215G2154' => 'vmu', 'VMungo1383G2411' => 'vmu', 'Zm00001eb051130' => 'zma', 'Zm00001eb116830' => 'zma', 'Zm00001eb116850' => 'zma', 'Zm00001eb151740' => 'zma', 'Zm00001eb292360' => 'zma', 'Zm00001eb301640' => 'zma' ), 'gf_id' => 'HOM05D000856', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000856' ), 'data_identifier' => 'HOM05D000856', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000856', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p00010' => 'bna', 'A03p04160' => 'bna', 'A03p17160' => 'bna', 'A04p23370' => 'bna', 'A05p14860' => 'bna', 'A08p37020' => 'bna', 'A09p08050' => 'bna', 'A09p66800' => 'bna', 'A09p67940' => 'bna', 'A10p02680' => 'bna', 'A10p05320' => 'bna', 'Aa31LG1G20560' => 'aar', 'Aa31LG1G20610' => 'aar', 'Aa31LG1G7810' => 'aar', 'Aa31LG5G3590' => 'aar', 'Aa31LG5G6140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3819' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4683' => 'aag', 'Actinidia04480' => 'ach', 'Actinidia05466' => 'ach', 'Actinidia08445' => 'ach', 'Actinidia21170' => 'ach', 'Actinidia24812' => 'ach', 'Actinidia24951' => 'ach', 'Actinidia40088' => 'ach', 'Ah.02g111660' => 'amhyb', 'Ah.11g048900' => 'amhyb', 'Ah.11g049910' => 'amhyb', 'AL1G13870' => 'aly', 'AL1G13880' => 'aly', 'AL1G16760' => 'aly', 'AL390U10020' => 'aly', 'AL4G25520' => 'aly', 'AL6G19890' => 'aly', 'AL6G19900' => 'aly', 'AL6G19910' => 'aly', 'AL8G40100' => 'aly', 'Aqoxy2G03562' => 'aox', 'Aqoxy5G00316' => 'aox', 'Aqoxy5G00926' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1628KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1H403S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2FU6SJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.882I6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8YRY2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YN1SN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AF70II' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZA8L1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F916KL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHRD8H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KTZ8QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S22EMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8M29T' => 'arhy', 'AT1G04270' => 'ath', 'AT1G04280' => 'ath', 'AT1G06750' => 'ath', 'AT1G33850' => 'ath', 'AT2G30630' => 'ath', 'AT5G09490' => 'ath', 'AT5G09500' => 'ath', 'AT5G09510' => 'ath', 'AT5G43640' => 'ath', 'AT5G63070' => 'ath', 'ATR0605G315' => 'atr', 'Atru.chr11.175' => 'acertr', 'Atru.chr11.653' => 'acertr', 'Atru.chr3.1616' => 'acertr', 'Atru.chr4.2230' => 'acertr', 'Atru.chr4.2232' => 'acertr', 'Atru.chr5.1598' => 'acertr', 'Atru.chr5.1600' => 'acertr', 'Atru.chr5.2188' => 'acertr', 'AUR62008326' => 'cqu', 'AUR62011922' => 'cqu', 'AUR62011924' => 'cqu', 'AUR62021771' => 'cqu', 'AUR62032237' => 'cqu', 'AUR62032240' => 'cqu', 'BcaB01g05572' => 'bca', 'BcaB02g10337' => 'bca', 'BcaB04g19944' => 'bca', 'BcaB05g21548' => 'bca', 'BcaB05g21549' => 'bca', 'BcaB05g23227' => 'bca', 'BcaB06g26256' => 'bca', 'BcaB06g26257' => 'bca', 'BcaB06g28379' => 'bca', 'BcaC02g11159' => 'bca', 'BcaC03g13258' => 'bca', 'BcaC03g13259' => 'bca', 'BcaC05g24456' => 'bca', 'BcaC05g24457' => 'bca', 'BcaC07g36922' => 'bca', 'BcaC07g36923' => 'bca', 'BcaC07g42050' => 'bca', 'BcaC07g42176' => 'bca', 'BcaC07g42195' => 'bca', 'BcaC07g42196' => 'bca', 'BcaNung06674' => 'bca', 'BolC2t06351H' => 'bol', 'BolC2t06352H' => 'bol', 'BolC3t12993H' => 'bol', 'BolC4t23525H' => 'bol', 'BolC4t27475H' => 'bol', 'BolC5t29025H' => 'bol', 'BolC5t29026H' => 'bol', 'BolC8t46898H' => 'bol', 'BolC8t46899H' => 'bol', 'BolC8t52630H' => 'bol', 'BolC8t52765H' => 'bol', 'BolC9t53824H' => 'bol', 'BraA03t09760Z' => 'bra', 'BraA03t10990Z' => 'bra', 'BraA05t20413Z' => 'bra', 'BraA08t35602Z' => 'bra', 'BraA09t36458Z' => 'bra', 'BraA09t42018Z' => 'bra', 'BraA09t42129Z' => 'bra', 'BraA10t42536Z' => 'bra', 'BraA10t42537Z' => 'bra', 'C01p10690' => 'bna', 'C02p03890' => 'bna', 'C02p03900' => 'bna', 'C03p04620' => 'bna', 'C04p19870' => 'bna', 'C04p59670' => 'bna', 'C05p02460' => 'bna', 'C05p02470' => 'bna', 'C08p00980' => 'bna', 'C08p00990' => 'bna', 'C08p51030' => 'bna', 'C08p52360' => 'bna', 'C09p09120' => 'bna', 'CAN.G19.15' => 'can', 'CAN.G251.10' => 'can', 'CAN.G251.9' => 'can', 'CAN.G398.24' => 'can', 'CAN.G410.32' => 'can', 'CAN.G881.2' => 'can', 'CANSAT01G3025' => 'cansat', 'CANSAT78G1211' => 'cansat', 'CANSAT78G1218' => 'cansat', 'CANSAT78G1521' => 'cansat', 'CANSAT78G1670' => 'cansat', 'CARHR003600' => 'chi', 'CARHR003610' => 'chi', 'CARHR006290' => 'chi', 'CARHR006430' => 'chi', 'CARHR124110' => 'chi', 'CARHR203870' => 'chi', 'CARHR203880' => 'chi', 'CARHR203890' => 'chi', 'CARHR276880' => 'chi', 'Carub.0001s0346' => 'cru', 'Carub.0001s0347' => 'cru', 'Carub.0001s0607' => 'cru', 'Carub.0003s2768' => 'cru', 'Carub.0003s2769' => 'cru', 'Carub.0004s1178' => 'cru', 'Carub.0006s0806' => 'cru', 'Carub.0006s0807' => 'cru', 'Carub.0006s0808' => 'cru', 'Carub.0008s0501' => 'cru', 'Carub.0008s2379' => 'cru', 'Ca_08655_v3' => 'car', 'Ca_08922_v3' => 'car', 'Ca_08923_v3' => 'car', 'Ca_09119_v3' => 'car', 'Ca_09703_v3' => 'car', 'Ca_09705_v3' => 'car', 'Ca_09835_v3' => 'car', 'Ca_26403_v3' => 'car', 'Ca_30719_v3' => 'car', 'CBR_g17958' => 'cbr', 'CBR_g40516' => 'cbr', 'Cc00_g05350' => 'ccan', 'Cc01_g18690' => 'ccan', 'Cc03_g04830' => 'ccan', 'Cc03_g04850' => 'ccan', 'CDE02G4469' => 'cde', 'CDE06G0883' => 'cde', 'CDE06G1295' => 'cde', 'CDE06G1390' => 'cde', 'CDE07G0584' => 'cde', 'CDE07G1084' => 'cde', 'CDE08G1259' => 'cde', 'Cfa002341' => 'cfa', 'Cfa024337' => 'cfa', 'Ciclev10004749m.g' => 'ccl', 'Ciclev10006127m.g' => 'ccl', 'Ciclev10019720m.g' => 'ccl', 'Ciclev10022652m.g' => 'ccl', 'CiPaw.01G190400' => 'cil', 'CiPaw.01G190500' => 'cil', 'CiPaw.02G116400' => 'cil', 'CiPaw.02G116500' => 'cil', 'CiPaw.04G183000' => 'cil', 'CiPaw.04G183300' => 'cil', 'ClCG05G004610' => 'cla', 'ClCG05G004620' => 'cla', 'ClCG06G006730' => 'cla', 'ClCG06G006740' => 'cla', 'ClCG11G003690' => 'cla', 'COL.COLO4_08276' => 'col', 'COL.COLO4_08277' => 'col', 'COL.COLO4_15787' => 'col', 'COL.COLO4_15789' => 'col', 'Cpa.g.c44815' => 'cpa', 'Cpa.g.sc52.144' => 'cpa', 'Cpa.g.sc58.46' => 'cpa', 'Cpa.g.sc58.47' => 'cpa', 'Cre08.g360900' => 'cre', 'CsaV3_2G013030' => 'csa', 'CsaV3_2G013050' => 'csa', 'CsaV3_2G015620' => 'csa', 'CsaV3_3G012590' => 'csa', 'CsaV3_3G012600' => 'csa', 'CSS0001641' => 'camsi', 'CSS0008310' => 'camsi', 'CSS0013011' => 'camsi', 'CSS0017147' => 'camsi', 'CSS0022970' => 'camsi', 'CSS0025655' => 'camsi', 'CSS0028665' => 'camsi', 'CSS0029117' => 'camsi', 'CSS0032024' => 'camsi', 'CSS0039681' => 'camsi', 'CSS0046516' => 'camsi', 'CSS0050307' => 'camsi', 'DCAR_005871' => 'dca', 'DCAR_007342' => 'dca', 'DCAR_024228' => 'dca', 'DCAR_027277' => 'dca', 'DCAR_030718' => 'dca', 'Dinv20287' => 'din', 'Dinv22461' => 'din', 'Dinv22464' => 'din', 'Dinv29912' => 'din', 'Dinv29913' => 'din', 'Dinv34580' => 'din', 'Dinv34582' => 'din', 'Dinv44632' => 'din', 'Duzib052G0266' => 'dzi', 'Duzib133G0907' => 'dzi', 'Duzib133G1034' => 'dzi', 'Duzib138G0207' => 'dzi', 'Duzib138G0491' => 'dzi', 'Duzib151G0812' => 'dzi', 'Duzib151G1166' => 'dzi', 'Duzib168G0192' => 'dzi', 'Duzib211G0077' => 'dzi', 'Duzib212G0429' => 'dzi', 'Duzib212G0472' => 'dzi', 'ECA233G2617' => 'eca', 'ECA236G4188' => 'eca', 'ECA240G0936' => 'eca', 'ECA240G1129' => 'eca', 'ECA247G0623' => 'eca', 'EL10Ac5g10451' => 'bvu', 'EL10Ac5g10453' => 'bvu', 'EL10Ac5g10894' => 'bvu', 'Eucgr.H00192' => 'egr', 'Eucgr.H00193' => 'egr', 'Eucgr.H00194' => 'egr', 'Eucgr.J01562' => 'egr', 'Eucgr.K03301' => 'egr', 'FAN02G0632' => 'fan', 'FAN05G5378' => 'fan', 'FAN09G3247' => 'fan', 'FAN12G0435' => 'fan', 'FAN12G2426' => 'fan', 'FAN14G1707' => 'fan', 'FAN14G4725' => 'fan', 'FAN15G2071' => 'fan', 'FAN17G3065' => 'fan', 'FAN19G1376' => 'fan', 'FAN20G0354' => 'fan', 'FAN20G2429' => 'fan', 'FAN20G2658' => 'fan', 'FAN24G2343' => 'fan', 'FAN27G2362' => 'fan', 'FAN28G1765' => 'fan', 'FvH4_1g16020' => 'fve', 'FvH4_2g04890' => 'fve', 'FvH4_2g22270' => 'fve', 'FvH4_4g02630' => 'fve', 'FvH4_4g02640' => 'fve', 'FvH4_6g02650' => 'fve', 'Glyma.02G140600' => 'gma', 'Glyma.03G159900' => 'gma', 'Glyma.05G234800' => 'gma', 'Glyma.07G269600' => 'gma', 'Glyma.08G042300' => 'gma', 'Glyma.10G033500' => 'gma', 'Glyma.10G185200' => 'gma', 'Glyma.17G004300' => 'gma', 'Glyma.19G161900' => 'gma', 'Glyma.20G205100' => 'gma', 'Glyma.20G205200' => 'gma', 'Gohir.A01G139101' => 'ghi', 'Gohir.A02G035600' => 'ghi', 'Gohir.A02G117901' => 'ghi', 'Gohir.A07G210100' => 'ghi', 'Gohir.A07G210200' => 'ghi', 'Gohir.A08G061100' => 'ghi', 'Gohir.A09G223000' => 'ghi', 'Gohir.A09G223100' => 'ghi', 'Gohir.A10G113900' => 'ghi', 'Gohir.A10G114000' => 'ghi', 'Gohir.D02G042300' => 'ghi', 'Gohir.D07G216100' => 'ghi', 'Gohir.D07G216200' => 'ghi', 'Gohir.D08G070400' => 'ghi', 'Gohir.D09G225000' => 'ghi', 'Gohir.D09G225100' => 'ghi', 'Gohir.D10G152300' => 'ghi', 'Gohir.D10G153200' => 'ghi', 'Gohir.D11G133701' => 'ghi', 'Gorai.004G074100' => 'gra', 'Gorai.005G046800' => 'gra', 'Gorai.006G246500' => 'gra', 'Gorai.006G246600' => 'gra', 'Gorai.007G142900' => 'gra', 'Gorai.011G171000' => 'gra', 'Gorai.011G171100' => 'gra', 'Gorai.013G104300' => 'gra', 'Gorai.013G104400' => 'gra', 'GSVIVG01000754001' => 'vvi', 'GSVIVG01000756001' => 'vvi', 'GSVIVG01010903001' => 'vvi', 'GSVIVG01017623001' => 'vvi', 'GSVIVG01018113001' => 'vvi', 'GSVIVG01018116001' => 'vvi', 'GSVIVG01018118001' => 'vvi', 'HanXRQChr03g0076211' => 'han', 'HanXRQChr03g0092431' => 'han', 'HanXRQChr03g0092441' => 'han', 'HanXRQChr03g0092591' => 'han', 'HanXRQChr03g0092671' => 'han', 'HanXRQChr03g0092681' => 'han', 'HanXRQChr03g0092691' => 'han', 'HanXRQChr03g0092701' => 'han', 'HanXRQChr03g0092721' => 'han', 'HanXRQChr03g0092731' => 'han', 'HanXRQChr04g0113681' => 'han', 'HanXRQChr10g0281371' => 'han', 'HanXRQChr11g0337141' => 'han', 'HanXRQChr13g0424521' => 'han', 'HanXRQChr13g0424531' => 'han', 'HanXRQChr13g0424541' => 'han', 'HanXRQChr16g0498221' => 'han', 'Haze_04377' => 'cav', 'Haze_11298' => 'cav', 'Haze_24547' => 'cav', 'Haze_24550' => 'cav', 'Haze_26587' => 'cav', 'Hma1.2p1_0650F.1_g195410' => 'hma', 'Hma1.2p1_0893F.1_g233470' => 'hma', 'HPP92_006508' => 'vpl', 'HPP92_024780' => 'vpl', 'Hund02688' => 'sun', 'Hund09380' => 'sun', 'Hund09381' => 'sun', 'Hund09832' => 'sun', 'Hund09833' => 'sun', 'Hund11351' => 'sun', 'Hund11513' => 'sun', 'Lalb_Chr06g0162591' => 'lal', 'Lalb_Chr06g0162601' => 'lal', 'Lalb_Chr06g0169321' => 'lal', 'Lalb_Chr09g0330951' => 'lal', 'Lalb_Chr16g0387631' => 'lal', 'Lalb_Chr21g0306241' => 'lal', 'Lalb_Chr25g0290051' => 'lal', 'Lalb_Chr25g0290061' => 'lal', 'Lalb_Chr25g0290071' => 'lal', 'Lj1g0003876' => 'lja', 'Lj1P1207T36' => 'lonja', 'Lj2C1156G12' => 'lonja', 'Lj3A793G39' => 'lonja', 'Lj3C580G2' => 'lonja', 'Lj3C780G2' => 'lonja', 'Lj3C780T4' => 'lonja', 'Lj3C793G9' => 'lonja', 'Lj4g0012960' => 'lja', 'Lj5g0021252' => 'lja', 'Lj5g0021484' => 'lja', 'Lj5g0024528' => 'lja', 'Lj6A399T12' => 'lonja', 'Lj6A656G65' => 'lonja', 'Lsat_1_v5_gn_3_125500' => 'lsa', 'Lsat_1_v5_gn_3_125540' => 'lsa', 'Lsat_1_v5_gn_5_72701' => 'lsa', 'Lsat_1_v5_gn_8_91560' => 'lsa', 'Lsat_1_v5_gn_9_9640' => 'lsa', 'Manes.01G200600' => 'mes', 'Manes.01G200700' => 'mes', 'Manes.03G168900' => 'mes', 'Manes.03G169000' => 'mes', 'Manes.05G085801' => 'mes', 'Manes.05G086200' => 'mes', 'Manes.15G036700' => 'mes', 'Manes.15G036900' => 'mes', 'Mapoly0004s0172' => 'mpo', 'Mapoly0023s0001' => 'mpo', 'Mapoly0142s0012' => 'mpo', 'MBI01_g32854_MAGBIO' => 'mbi', 'MBI11_g24427_MAGBIO' => 'mbi', 'MBI11_g47319_MAGBIO' => 'mbi', 'MCO01G433' => 'mco', 'MD00G1187800' => 'mdo', 'MD04G1226500' => 'mdo', 'MD05G1203900' => 'mdo', 'MD10G1191100' => 'mdo', 'MD12G1243500' => 'mdo', 'MD13G1207000' => 'mdo', 'MD13G1207100' => 'mdo', 'MD16G1208600' => 'mdo', 'Medtr1g050352' => 'mtr', 'Medtr1g070385' => 'mtr', 'Medtr1g070450' => 'mtr', 'Medtr1g075200' => 'mtr', 'Medtr1g075250' => 'mtr', 'Medtr1g075260' => 'mtr', 'Medtr1g475250' => 'mtr', 'Medtr4g075450' => 'mtr', 'Medtr7g096300' => 'mtr', 'Medtr8g105110' => 'mtr', 'MELO3C006470.2' => 'cme', 'MELO3C006471.2' => 'cme', 'MELO3C020772.2' => 'cme', 'MELO3C026780.2' => 'cme', 'MELO3C026781.2' => 'cme', 'Migut.D00390' => 'egut', 'Migut.G00435' => 'egut', 'Migut.G00436' => 'egut', 'Migut.G00718' => 'egut', 'MSTRG.21891' => 'ama', 'MSTRG.26910' => 'ama', 'MSTRG.4099' => 'ama', 'MSTRG.9925' => 'ama', 'Nitab4.5_0000165g0010' => 'nta', 'Nitab4.5_0000209g0180' => 'nta', 'Nitab4.5_0000244g0440' => 'nta', 'Nitab4.5_0000525g0220' => 'nta', 'Nitab4.5_0001597g0020' => 'nta', 'Nitab4.5_0001878g0040' => 'nta', 'Nitab4.5_0001878g0060' => 'nta', 'Nitab4.5_0002838g0100' => 'nta', 'Nitab4.5_0002838g0120' => 'nta', 'Nitab4.5_0004798g0030' => 'nta', 'Nitab4.5_0005420g0010' => 'nta', 'Nitab4.5_0005507g0010' => 'nta', 'Nitab4.5_0005574g0020' => 'nta', 'Nitab4.5_0005838g0010' => 'nta', 'Nitab4.5_0010580g0020' => 'nta', 'Nn1g02599' => 'nnu', 'Nn1g02608' => 'nnu', 'Nn3g17742' => 'nnu', 'Nn3g19534' => 'nnu', 'Nn3g19535' => 'nnu', 'Oeu008790.1' => 'oeu', 'Oeu008792.1' => 'oeu', 'Oeu032590.1' => 'oeu', 'Oeu035349.1' => 'oeu', 'Oeu049791.1' => 'oeu', 'Os01g0774500' => 'osa', 'Os03g0628800' => 'osa', 'Os03g0798600' => 'osa', 'Os05g0508800' => 'osa', 'Peaxi162Scf00036g02018' => 'pax', 'Peaxi162Scf00578g00032' => 'pax', 'Peaxi162Scf00578g00317' => 'pax', 'Peaxi162Scf00785g00114' => 'pax', 'Peaxi162Scf00813g00119' => 'pax', 'Peaxi162Scf00906g00227' => 'pax', 'PGR004G0875' => 'pgr', 'PGR004G2424' => 'pgr', 'PGR031G1239' => 'pgr', 'PGR031G2474' => 'pgr', 'PGR044G0423' => 'pgr', 'PGSC0003DMG400001128' => 'stu', 'PGSC0003DMG400007336' => 'stu', 'PGSC0003DMG400016318' => 'stu', 'PGSC0003DMG400016319' => 'stu', 'PGSC0003DMG400018074' => 'stu', 'Phvul.001G157700' => 'pvu', 'Phvul.002G148550' => 'pvu', 'Phvul.002G320200' => 'pvu', 'Phvul.003G089200' => 'pvu', 'Phvul.007G126000' => 'pvu', 'Phvul.007G126100' => 'pvu', 'Phvul.007G178000' => 'pvu', 'Phvul.007G178200' => 'pvu', 'Potri.002G043000' => 'ptr', 'Potri.002G043200' => 'ptr', 'Potri.003G123750' => 'ptr', 'Potri.005G055401' => 'ptr', 'Potri.005G219700' => 'ptr', 'Potri.005G220000' => 'ptr', 'Potri.008G161901' => 'ptr', 'Potri.008G162000' => 'ptr', 'Potri.008G162400' => 'ptr', 'Potri.010G076900' => 'ptr', 'Pp3c12_9180' => 'ppa', 'Pp3c13_19770' => 'ppa', 'Pp3c14_22950' => 'ppa', 'Pp3c16_12160' => 'ppa', 'Pp3c27_7820' => 'ppa', 'Pp3c2_3490' => 'ppa', 'Pp3c3_23700' => 'ppa', 'Pp3c3_36520' => 'ppa', 'Pp3c4_15250' => 'ppa', 'PRCOL_00007002' => 'pco', 'Prupe.1G030600' => 'ppe', 'Prupe.1G030700' => 'ppe', 'Prupe.6G345200' => 'ppe', 'Prupe.8G230300' => 'ppe', 'Prupe.8G230500' => 'ppe', 'Psat3g059600' => 'psa', 'Psat5g200920' => 'psa', 'Psat6g056440' => 'psa', 'Psat6g057360' => 'psa', 'Psat6g134120' => 'psa', 'Psat6g134160' => 'psa', 'Psat7g008640' => 'psa', 'Psat7g185240' => 'psa', 'PSO017G1330' => 'pso', 'PSO063G6097' => 'pso', 'PSO170G0835' => 'pso', 'PSO170G2499' => 'pso', 'PSO210G5058' => 'pso', 'PSO210G6154' => 'pso', 'PSO585G0031' => 'pso', 'PSO832G0264' => 'pso', 'PSO832G4288' => 'pso', 'QL03p027355' => 'qlo', 'QL03p027430' => 'qlo', 'QL04p081380' => 'qlo', 'QL06p015642' => 'qlo', 'QL06p015650' => 'qlo', 'QL06p015686' => 'qlo', 'QL12p042927' => 'qlo', 'QL93p1863_0035' => 'qlo', 'RcHm_v2.0_Chr3g0450581' => 'rch', 'RcHm_v2.0_Chr4g0390371' => 'rch', 'RcHm_v2.0_Chr4g0390381' => 'rch', 'RcHm_v2.0_Chr4g0390491' => 'rch', 'RcHm_v2.0_Chr4g0390501' => 'rch', 'RcHm_v2.0_Chr6g0289231' => 'rch', 'Rhsim04G0190400' => 'rsi', 'Rhsim04G0190500' => 'rsi', 'Rhsim04G0190600' => 'rsi', 'Rhsim13G0031400' => 'rsi', 'Rhsim13G0165600' => 'rsi', 'RhsimUnG0114600' => 'rsi', 'RhsimUnG0114700' => 'rsi', 'Sabra02G0034800' => 'sbr', 'Sabra02G0035100' => 'sbr', 'Sabra05G0168600' => 'sbr', 'Sabra05G0168800' => 'sbr', 'Sabra08G0123700' => 'sbr', 'Sabra10G0031900' => 'sbr', 'Sabra13G0039000' => 'sbr', 'SalBow2G0782' => 'sbo', 'SalBow2G1403' => 'sbo', 'SalBow4G0074' => 'sbo', 'SalBow4G2635' => 'sbo', 'SalBow5G3010' => 'sbo', 'Sc05g0000870' => 'sci', 'Sc05g0000890' => 'sci', 'Sc13g0005000' => 'sci', 'Sc13g0005030' => 'sci', 'Sc19g0003790' => 'sci', 'Sc19g0003800' => 'sci', 'Sed0003467' => 'sed', 'Sed0009355' => 'sed', 'Sed0009894' => 'sed', 'Sed0011972' => 'sed', 'Sed0021483' => 'sed', 'Sed0021750' => 'sed', 'Sed0026279' => 'sed', 'SEGI_05312' => 'sgi', 'SEGI_10112' => 'sgi', 'SEGI_15835' => 'sgi', 'SEGI_30386' => 'sgi', 'SEGI_34122' => 'sgi', 'SEGI_35063' => 'sgi', 'SGA_v2.0_scaffold101G29794' => 'sas', 'SGA_v2.0_scaffold1G00573' => 'sas', 'SGA_v2.0_scaffold79G25637' => 'sas', 'SGA_v2.0_scaffold88G27283' => 'sas', 'SGA_v2.0_scaffold88G27285' => 'sas', 'SGA_v2.0_scaffold88G27331' => 'sas', 'SHI09937' => 'shi', 'SMO119G0302' => 'smo', 'SMO137G0231' => 'smo', 'SMO367G1151' => 'smo', 'Solyc02g082000.3' => 'sly', 'Solyc06g031670.3' => 'sly', 'Solyc06g053810.3' => 'sly', 'Solyc07g025457.1' => 'sly', 'Solyc08g059740.1' => 'sly', 'Solyc08g059750.3' => 'sly', 'Solyc09g083370.3' => 'sly', 'Solyc12g038950.3' => 'sly', 'Sopen02g026630' => 'spe', 'Sopen06g018930' => 'spe', 'Sopen06g018940' => 'spe', 'Sopen08g009460' => 'spe', 'Sopen09g032290' => 'spe', 'Sp1g03080' => 'spa', 'Sp1g03090' => 'spa', 'Sp1g05480' => 'spa', 'Sp2g07860' => 'spa', 'Sp2g08430' => 'spa', 'Sp2g08440' => 'spa', 'Sp2g26200' => 'spa', 'Sp4g13170' => 'spa', 'Sp6g33840' => 'spa', 'SpUn1204_0010' => 'spa', 'TAR365G0908' => 'tar', 'TAR381G1270' => 'tar', 'TAR381G1651' => 'tar', 'TAR625G1131' => 'tar', 'TAR633G0962' => 'tar', 'TAR633G1729' => 'tar', 'TAR633G1864' => 'tar', 'TAR636G0221' => 'tar', 'TAR636G0314' => 'tar', 'TAR636G3202' => 'tar', 'THA.LOC104800805' => 'tha', 'THA.LOC104801096' => 'tha', 'THA.LOC104801555' => 'tha', 'THA.LOC104808491' => 'tha', 'THA.LOC104808595' => 'tha', 'THA.LOC104815985' => 'tha', 'THA.LOC104822250' => 'tha', 'THA.LOC104826071' => 'tha', 'Thecc.01G265200' => 'tca', 'Thecc.01G265300' => 'tca', 'Thecc.01G265700' => 'tca', 'Thecc.03G109100' => 'tca', 'Thecc.04G245900' => 'tca', 'Thecc.04G246000' => 'tca', 'Thhalv10003334m.g' => 'esa', 'Thhalv10005508m.g' => 'esa', 'Thhalv10005643m.g' => 'esa', 'Thhalv10007316m.g' => 'esa', 'Thhalv10009006m.g' => 'esa', 'Thhalv10009309m.g' => 'esa', 'Thhalv10014917m.g' => 'esa', 'Thhalv10014919m.g' => 'esa', 'Thhalv10015393m.g' => 'esa', 'Thhalv10016515m.g' => 'esa', 'Thhalv10029242m.g' => 'esa', 'TPR.G16654' => 'tpr', 'TPR.G20589' => 'tpr', 'TPR.G23029' => 'tpr', 'TPR.G27731' => 'tpr', 'TPR.G28889' => 'tpr', 'TPR.G28899' => 'tpr', 'TPR.G30846' => 'tpr', 'TPR.G5452' => 'tpr', 'TPR.G5713' => 'tpr', 'TPR.G9046' => 'tpr', 'TPR.G9061' => 'tpr', 'TWI09G1075' => 'twi', 'TWI12G0806' => 'twi', 'TWI18G0108' => 'twi', 'TWI53G1361' => 'twi', 'TWI73G0185' => 'twi', 'TWI73G0427' => 'twi', 'unitig_37.g12001' => 'ugi', 'unitig_747.g21660' => 'ugi', 'unitig_748.g7232' => 'ugi', 'unitig_748.g7315' => 'ugi', 'unitig_85.g27262' => 'ugi', 'unitig_92.g28220' => 'ugi', 'vmacro02632' => 'vma', 'vmacro08410' => 'vma', 'vmacro08411' => 'vma', 'vmacro15407' => 'vma', 'VMungo0251G3619' => 'vmu', 'VMungo0720G1204' => 'vmu', 'VMungo0720G1918' => 'vmu', 'VMungo0720G2387' => 'vmu', 'VMungo0720G2961' => 'vmu', 'VMungo1215G2154' => 'vmu', 'VMungo1383G2411' => 'vmu', 'Zm00001eb051130' => 'zma', 'Zm00001eb116830' => 'zma', 'Zm00001eb116850' => 'zma', 'Zm00001eb151740' => 'zma', 'Zm00001eb292360' => 'zma', 'Zm00001eb301640' => 'zma' ) $gf_id = 'HOM05D000856' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000856' ) $data_identifier = 'HOM05D000856' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 13, 'ath' => (int) 10, 'atr' => (int) 1, 'acertr' => (int) 8, 'cqu' => (int) 6, 'bca' => (int) 21, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 11, 'car' => (int) 9, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 8, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 5, 'fan' => (int) 16, 'fve' => (int) 6, 'gma' => (int) 11, 'ghi' => (int) 19, 'gra' => (int) 9, 'vvi' => (int) 7, 'han' => (int) 17, 'cav' => (int) 5, 'hma' => (int) 2, 'vpl' => (int) 2, 'sun' => (int) 7, 'lal' => (int) 9, 'lja' => (int) 5, 'lonja' => (int) 9, 'lsa' => (int) 5, 'mes' => (int) 8, 'mpo' => (int) 3, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 10, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 15, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 9, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 9, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 6, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 5, 'spa' => (int) 10, 'tar' => (int) 10, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 11, 'tpr' => (int) 11, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 4, 'vmu' => (int) 7, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb301640' $species_info = array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ) $local_species = 'acertr' $disabled = '' $selected = ''include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0;
$disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":"";
$selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":"";
$num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0;
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000856', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p00010' => 'bna', 'A03p04160' => 'bna', 'A03p17160' => 'bna', 'A04p23370' => 'bna', 'A05p14860' => 'bna', 'A08p37020' => 'bna', 'A09p08050' => 'bna', 'A09p66800' => 'bna', 'A09p67940' => 'bna', 'A10p02680' => 'bna', 'A10p05320' => 'bna', 'Aa31LG1G20560' => 'aar', 'Aa31LG1G20610' => 'aar', 'Aa31LG1G7810' => 'aar', 'Aa31LG5G3590' => 'aar', 'Aa31LG5G6140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3819' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4683' => 'aag', 'Actinidia04480' => 'ach', 'Actinidia05466' => 'ach', 'Actinidia08445' => 'ach', 'Actinidia21170' => 'ach', 'Actinidia24812' => 'ach', 'Actinidia24951' => 'ach', 'Actinidia40088' => 'ach', 'Ah.02g111660' => 'amhyb', 'Ah.11g048900' => 'amhyb', 'Ah.11g049910' => 'amhyb', 'AL1G13870' => 'aly', 'AL1G13880' => 'aly', 'AL1G16760' => 'aly', 'AL390U10020' => 'aly', 'AL4G25520' => 'aly', 'AL6G19890' => 'aly', 'AL6G19900' => 'aly', 'AL6G19910' => 'aly', 'AL8G40100' => 'aly', 'Aqoxy2G03562' => 'aox', 'Aqoxy5G00316' => 'aox', 'Aqoxy5G00926' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1628KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1H403S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2FU6SJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.882I6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8YRY2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YN1SN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AF70II' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZA8L1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F916KL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHRD8H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KTZ8QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S22EMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8M29T' => 'arhy', 'AT1G04270' => 'ath', 'AT1G04280' => 'ath', 'AT1G06750' => 'ath', 'AT1G33850' => 'ath', 'AT2G30630' => 'ath', 'AT5G09490' => 'ath', 'AT5G09500' => 'ath', 'AT5G09510' => 'ath', 'AT5G43640' => 'ath', 'AT5G63070' => 'ath', 'ATR0605G315' => 'atr', 'Atru.chr11.175' => 'acertr', 'Atru.chr11.653' => 'acertr', 'Atru.chr3.1616' => 'acertr', 'Atru.chr4.2230' => 'acertr', 'Atru.chr4.2232' => 'acertr', 'Atru.chr5.1598' => 'acertr', 'Atru.chr5.1600' => 'acertr', 'Atru.chr5.2188' => 'acertr', 'AUR62008326' => 'cqu', 'AUR62011922' => 'cqu', 'AUR62011924' => 'cqu', 'AUR62021771' => 'cqu', 'AUR62032237' => 'cqu', 'AUR62032240' => 'cqu', 'BcaB01g05572' => 'bca', 'BcaB02g10337' => 'bca', 'BcaB04g19944' => 'bca', 'BcaB05g21548' => 'bca', 'BcaB05g21549' => 'bca', 'BcaB05g23227' => 'bca', 'BcaB06g26256' => 'bca', 'BcaB06g26257' => 'bca', 'BcaB06g28379' => 'bca', 'BcaC02g11159' => 'bca', 'BcaC03g13258' => 'bca', 'BcaC03g13259' => 'bca', 'BcaC05g24456' => 'bca', 'BcaC05g24457' => 'bca', 'BcaC07g36922' => 'bca', 'BcaC07g36923' => 'bca', 'BcaC07g42050' => 'bca', 'BcaC07g42176' => 'bca', 'BcaC07g42195' => 'bca', 'BcaC07g42196' => 'bca', 'BcaNung06674' => 'bca', 'BolC2t06351H' => 'bol', 'BolC2t06352H' => 'bol', 'BolC3t12993H' => 'bol', 'BolC4t23525H' => 'bol', 'BolC4t27475H' => 'bol', 'BolC5t29025H' => 'bol', 'BolC5t29026H' => 'bol', 'BolC8t46898H' => 'bol', 'BolC8t46899H' => 'bol', 'BolC8t52630H' => 'bol', 'BolC8t52765H' => 'bol', 'BolC9t53824H' => 'bol', 'BraA03t09760Z' => 'bra', 'BraA03t10990Z' => 'bra', 'BraA05t20413Z' => 'bra', 'BraA08t35602Z' => 'bra', 'BraA09t36458Z' => 'bra', 'BraA09t42018Z' => 'bra', 'BraA09t42129Z' => 'bra', 'BraA10t42536Z' => 'bra', 'BraA10t42537Z' => 'bra', 'C01p10690' => 'bna', 'C02p03890' => 'bna', 'C02p03900' => 'bna', 'C03p04620' => 'bna', 'C04p19870' => 'bna', 'C04p59670' => 'bna', 'C05p02460' => 'bna', 'C05p02470' => 'bna', 'C08p00980' => 'bna', 'C08p00990' => 'bna', 'C08p51030' => 'bna', 'C08p52360' => 'bna', 'C09p09120' => 'bna', 'CAN.G19.15' => 'can', 'CAN.G251.10' => 'can', 'CAN.G251.9' => 'can', 'CAN.G398.24' => 'can', 'CAN.G410.32' => 'can', 'CAN.G881.2' => 'can', 'CANSAT01G3025' => 'cansat', 'CANSAT78G1211' => 'cansat', 'CANSAT78G1218' => 'cansat', 'CANSAT78G1521' => 'cansat', 'CANSAT78G1670' => 'cansat', 'CARHR003600' => 'chi', 'CARHR003610' => 'chi', 'CARHR006290' => 'chi', 'CARHR006430' => 'chi', 'CARHR124110' => 'chi', 'CARHR203870' => 'chi', 'CARHR203880' => 'chi', 'CARHR203890' => 'chi', 'CARHR276880' => 'chi', 'Carub.0001s0346' => 'cru', 'Carub.0001s0347' => 'cru', 'Carub.0001s0607' => 'cru', 'Carub.0003s2768' => 'cru', 'Carub.0003s2769' => 'cru', 'Carub.0004s1178' => 'cru', 'Carub.0006s0806' => 'cru', 'Carub.0006s0807' => 'cru', 'Carub.0006s0808' => 'cru', 'Carub.0008s0501' => 'cru', 'Carub.0008s2379' => 'cru', 'Ca_08655_v3' => 'car', 'Ca_08922_v3' => 'car', 'Ca_08923_v3' => 'car', 'Ca_09119_v3' => 'car', 'Ca_09703_v3' => 'car', 'Ca_09705_v3' => 'car', 'Ca_09835_v3' => 'car', 'Ca_26403_v3' => 'car', 'Ca_30719_v3' => 'car', 'CBR_g17958' => 'cbr', 'CBR_g40516' => 'cbr', 'Cc00_g05350' => 'ccan', 'Cc01_g18690' => 'ccan', 'Cc03_g04830' => 'ccan', 'Cc03_g04850' => 'ccan', 'CDE02G4469' => 'cde', 'CDE06G0883' => 'cde', 'CDE06G1295' => 'cde', 'CDE06G1390' => 'cde', 'CDE07G0584' => 'cde', 'CDE07G1084' => 'cde', 'CDE08G1259' => 'cde', 'Cfa002341' => 'cfa', 'Cfa024337' => 'cfa', 'Ciclev10004749m.g' => 'ccl', 'Ciclev10006127m.g' => 'ccl', 'Ciclev10019720m.g' => 'ccl', 'Ciclev10022652m.g' => 'ccl', 'CiPaw.01G190400' => 'cil', 'CiPaw.01G190500' => 'cil', 'CiPaw.02G116400' => 'cil', 'CiPaw.02G116500' => 'cil', 'CiPaw.04G183000' => 'cil', 'CiPaw.04G183300' => 'cil', 'ClCG05G004610' => 'cla', 'ClCG05G004620' => 'cla', 'ClCG06G006730' => 'cla', 'ClCG06G006740' => 'cla', 'ClCG11G003690' => 'cla', 'COL.COLO4_08276' => 'col', 'COL.COLO4_08277' => 'col', 'COL.COLO4_15787' => 'col', 'COL.COLO4_15789' => 'col', 'Cpa.g.c44815' => 'cpa', 'Cpa.g.sc52.144' => 'cpa', 'Cpa.g.sc58.46' => 'cpa', 'Cpa.g.sc58.47' => 'cpa', 'Cre08.g360900' => 'cre', 'CsaV3_2G013030' => 'csa', 'CsaV3_2G013050' => 'csa', 'CsaV3_2G015620' => 'csa', 'CsaV3_3G012590' => 'csa', 'CsaV3_3G012600' => 'csa', 'CSS0001641' => 'camsi', 'CSS0008310' => 'camsi', 'CSS0013011' => 'camsi', 'CSS0017147' => 'camsi', 'CSS0022970' => 'camsi', 'CSS0025655' => 'camsi', 'CSS0028665' => 'camsi', 'CSS0029117' => 'camsi', 'CSS0032024' => 'camsi', 'CSS0039681' => 'camsi', 'CSS0046516' => 'camsi', 'CSS0050307' => 'camsi', 'DCAR_005871' => 'dca', 'DCAR_007342' => 'dca', 'DCAR_024228' => 'dca', 'DCAR_027277' => 'dca', 'DCAR_030718' => 'dca', 'Dinv20287' => 'din', 'Dinv22461' => 'din', 'Dinv22464' => 'din', 'Dinv29912' => 'din', 'Dinv29913' => 'din', 'Dinv34580' => 'din', 'Dinv34582' => 'din', 'Dinv44632' => 'din', 'Duzib052G0266' => 'dzi', 'Duzib133G0907' => 'dzi', 'Duzib133G1034' => 'dzi', 'Duzib138G0207' => 'dzi', 'Duzib138G0491' => 'dzi', 'Duzib151G0812' => 'dzi', 'Duzib151G1166' => 'dzi', 'Duzib168G0192' => 'dzi', 'Duzib211G0077' => 'dzi', 'Duzib212G0429' => 'dzi', 'Duzib212G0472' => 'dzi', 'ECA233G2617' => 'eca', 'ECA236G4188' => 'eca', 'ECA240G0936' => 'eca', 'ECA240G1129' => 'eca', 'ECA247G0623' => 'eca', 'EL10Ac5g10451' => 'bvu', 'EL10Ac5g10453' => 'bvu', 'EL10Ac5g10894' => 'bvu', 'Eucgr.H00192' => 'egr', 'Eucgr.H00193' => 'egr', 'Eucgr.H00194' => 'egr', 'Eucgr.J01562' => 'egr', 'Eucgr.K03301' => 'egr', 'FAN02G0632' => 'fan', 'FAN05G5378' => 'fan', 'FAN09G3247' => 'fan', 'FAN12G0435' => 'fan', 'FAN12G2426' => 'fan', 'FAN14G1707' => 'fan', 'FAN14G4725' => 'fan', 'FAN15G2071' => 'fan', 'FAN17G3065' => 'fan', 'FAN19G1376' => 'fan', 'FAN20G0354' => 'fan', 'FAN20G2429' => 'fan', 'FAN20G2658' => 'fan', 'FAN24G2343' => 'fan', 'FAN27G2362' => 'fan', 'FAN28G1765' => 'fan', 'FvH4_1g16020' => 'fve', 'FvH4_2g04890' => 'fve', 'FvH4_2g22270' => 'fve', 'FvH4_4g02630' => 'fve', 'FvH4_4g02640' => 'fve', 'FvH4_6g02650' => 'fve', 'Glyma.02G140600' => 'gma', 'Glyma.03G159900' => 'gma', 'Glyma.05G234800' => 'gma', 'Glyma.07G269600' => 'gma', 'Glyma.08G042300' => 'gma', 'Glyma.10G033500' => 'gma', 'Glyma.10G185200' => 'gma', 'Glyma.17G004300' => 'gma', 'Glyma.19G161900' => 'gma', 'Glyma.20G205100' => 'gma', 'Glyma.20G205200' => 'gma', 'Gohir.A01G139101' => 'ghi', 'Gohir.A02G035600' => 'ghi', 'Gohir.A02G117901' => 'ghi', 'Gohir.A07G210100' => 'ghi', 'Gohir.A07G210200' => 'ghi', 'Gohir.A08G061100' => 'ghi', 'Gohir.A09G223000' => 'ghi', 'Gohir.A09G223100' => 'ghi', 'Gohir.A10G113900' => 'ghi', 'Gohir.A10G114000' => 'ghi', 'Gohir.D02G042300' => 'ghi', 'Gohir.D07G216100' => 'ghi', 'Gohir.D07G216200' => 'ghi', 'Gohir.D08G070400' => 'ghi', 'Gohir.D09G225000' => 'ghi', 'Gohir.D09G225100' => 'ghi', 'Gohir.D10G152300' => 'ghi', 'Gohir.D10G153200' => 'ghi', 'Gohir.D11G133701' => 'ghi', 'Gorai.004G074100' => 'gra', 'Gorai.005G046800' => 'gra', 'Gorai.006G246500' => 'gra', 'Gorai.006G246600' => 'gra', 'Gorai.007G142900' => 'gra', 'Gorai.011G171000' => 'gra', 'Gorai.011G171100' => 'gra', 'Gorai.013G104300' => 'gra', 'Gorai.013G104400' => 'gra', 'GSVIVG01000754001' => 'vvi', 'GSVIVG01000756001' => 'vvi', 'GSVIVG01010903001' => 'vvi', 'GSVIVG01017623001' => 'vvi', 'GSVIVG01018113001' => 'vvi', 'GSVIVG01018116001' => 'vvi', 'GSVIVG01018118001' => 'vvi', 'HanXRQChr03g0076211' => 'han', 'HanXRQChr03g0092431' => 'han', 'HanXRQChr03g0092441' => 'han', 'HanXRQChr03g0092591' => 'han', 'HanXRQChr03g0092671' => 'han', 'HanXRQChr03g0092681' => 'han', 'HanXRQChr03g0092691' => 'han', 'HanXRQChr03g0092701' => 'han', 'HanXRQChr03g0092721' => 'han', 'HanXRQChr03g0092731' => 'han', 'HanXRQChr04g0113681' => 'han', 'HanXRQChr10g0281371' => 'han', 'HanXRQChr11g0337141' => 'han', 'HanXRQChr13g0424521' => 'han', 'HanXRQChr13g0424531' => 'han', 'HanXRQChr13g0424541' => 'han', 'HanXRQChr16g0498221' => 'han', 'Haze_04377' => 'cav', 'Haze_11298' => 'cav', 'Haze_24547' => 'cav', 'Haze_24550' => 'cav', 'Haze_26587' => 'cav', 'Hma1.2p1_0650F.1_g195410' => 'hma', 'Hma1.2p1_0893F.1_g233470' => 'hma', 'HPP92_006508' => 'vpl', 'HPP92_024780' => 'vpl', 'Hund02688' => 'sun', 'Hund09380' => 'sun', 'Hund09381' => 'sun', 'Hund09832' => 'sun', 'Hund09833' => 'sun', 'Hund11351' => 'sun', 'Hund11513' => 'sun', 'Lalb_Chr06g0162591' => 'lal', 'Lalb_Chr06g0162601' => 'lal', 'Lalb_Chr06g0169321' => 'lal', 'Lalb_Chr09g0330951' => 'lal', 'Lalb_Chr16g0387631' => 'lal', 'Lalb_Chr21g0306241' => 'lal', 'Lalb_Chr25g0290051' => 'lal', 'Lalb_Chr25g0290061' => 'lal', 'Lalb_Chr25g0290071' => 'lal', 'Lj1g0003876' => 'lja', 'Lj1P1207T36' => 'lonja', 'Lj2C1156G12' => 'lonja', 'Lj3A793G39' => 'lonja', 'Lj3C580G2' => 'lonja', 'Lj3C780G2' => 'lonja', 'Lj3C780T4' => 'lonja', 'Lj3C793G9' => 'lonja', 'Lj4g0012960' => 'lja', 'Lj5g0021252' => 'lja', 'Lj5g0021484' => 'lja', 'Lj5g0024528' => 'lja', 'Lj6A399T12' => 'lonja', 'Lj6A656G65' => 'lonja', 'Lsat_1_v5_gn_3_125500' => 'lsa', 'Lsat_1_v5_gn_3_125540' => 'lsa', 'Lsat_1_v5_gn_5_72701' => 'lsa', 'Lsat_1_v5_gn_8_91560' => 'lsa', 'Lsat_1_v5_gn_9_9640' => 'lsa', 'Manes.01G200600' => 'mes', 'Manes.01G200700' => 'mes', 'Manes.03G168900' => 'mes', 'Manes.03G169000' => 'mes', 'Manes.05G085801' => 'mes', 'Manes.05G086200' => 'mes', 'Manes.15G036700' => 'mes', 'Manes.15G036900' => 'mes', 'Mapoly0004s0172' => 'mpo', 'Mapoly0023s0001' => 'mpo', 'Mapoly0142s0012' => 'mpo', 'MBI01_g32854_MAGBIO' => 'mbi', 'MBI11_g24427_MAGBIO' => 'mbi', 'MBI11_g47319_MAGBIO' => 'mbi', 'MCO01G433' => 'mco', 'MD00G1187800' => 'mdo', 'MD04G1226500' => 'mdo', 'MD05G1203900' => 'mdo', 'MD10G1191100' => 'mdo', 'MD12G1243500' => 'mdo', 'MD13G1207000' => 'mdo', 'MD13G1207100' => 'mdo', 'MD16G1208600' => 'mdo', 'Medtr1g050352' => 'mtr', 'Medtr1g070385' => 'mtr', 'Medtr1g070450' => 'mtr', 'Medtr1g075200' => 'mtr', 'Medtr1g075250' => 'mtr', 'Medtr1g075260' => 'mtr', 'Medtr1g475250' => 'mtr', 'Medtr4g075450' => 'mtr', 'Medtr7g096300' => 'mtr', 'Medtr8g105110' => 'mtr', 'MELO3C006470.2' => 'cme', 'MELO3C006471.2' => 'cme', 'MELO3C020772.2' => 'cme', 'MELO3C026780.2' => 'cme', 'MELO3C026781.2' => 'cme', 'Migut.D00390' => 'egut', 'Migut.G00435' => 'egut', 'Migut.G00436' => 'egut', 'Migut.G00718' => 'egut', 'MSTRG.21891' => 'ama', 'MSTRG.26910' => 'ama', 'MSTRG.4099' => 'ama', 'MSTRG.9925' => 'ama', 'Nitab4.5_0000165g0010' => 'nta', 'Nitab4.5_0000209g0180' => 'nta', 'Nitab4.5_0000244g0440' => 'nta', 'Nitab4.5_0000525g0220' => 'nta', 'Nitab4.5_0001597g0020' => 'nta', 'Nitab4.5_0001878g0040' => 'nta', 'Nitab4.5_0001878g0060' => 'nta', 'Nitab4.5_0002838g0100' => 'nta', 'Nitab4.5_0002838g0120' => 'nta', 'Nitab4.5_0004798g0030' => 'nta', 'Nitab4.5_0005420g0010' => 'nta', 'Nitab4.5_0005507g0010' => 'nta', 'Nitab4.5_0005574g0020' => 'nta', 'Nitab4.5_0005838g0010' => 'nta', 'Nitab4.5_0010580g0020' => 'nta', 'Nn1g02599' => 'nnu', 'Nn1g02608' => 'nnu', 'Nn3g17742' => 'nnu', 'Nn3g19534' => 'nnu', 'Nn3g19535' => 'nnu', 'Oeu008790.1' => 'oeu', 'Oeu008792.1' => 'oeu', 'Oeu032590.1' => 'oeu', 'Oeu035349.1' => 'oeu', 'Oeu049791.1' => 'oeu', 'Os01g0774500' => 'osa', 'Os03g0628800' => 'osa', 'Os03g0798600' => 'osa', 'Os05g0508800' => 'osa', 'Peaxi162Scf00036g02018' => 'pax', 'Peaxi162Scf00578g00032' => 'pax', 'Peaxi162Scf00578g00317' => 'pax', 'Peaxi162Scf00785g00114' => 'pax', 'Peaxi162Scf00813g00119' => 'pax', 'Peaxi162Scf00906g00227' => 'pax', 'PGR004G0875' => 'pgr', 'PGR004G2424' => 'pgr', 'PGR031G1239' => 'pgr', 'PGR031G2474' => 'pgr', 'PGR044G0423' => 'pgr', 'PGSC0003DMG400001128' => 'stu', 'PGSC0003DMG400007336' => 'stu', 'PGSC0003DMG400016318' => 'stu', 'PGSC0003DMG400016319' => 'stu', 'PGSC0003DMG400018074' => 'stu', 'Phvul.001G157700' => 'pvu', 'Phvul.002G148550' => 'pvu', 'Phvul.002G320200' => 'pvu', 'Phvul.003G089200' => 'pvu', 'Phvul.007G126000' => 'pvu', 'Phvul.007G126100' => 'pvu', 'Phvul.007G178000' => 'pvu', 'Phvul.007G178200' => 'pvu', 'Potri.002G043000' => 'ptr', 'Potri.002G043200' => 'ptr', 'Potri.003G123750' => 'ptr', 'Potri.005G055401' => 'ptr', 'Potri.005G219700' => 'ptr', 'Potri.005G220000' => 'ptr', 'Potri.008G161901' => 'ptr', 'Potri.008G162000' => 'ptr', 'Potri.008G162400' => 'ptr', 'Potri.010G076900' => 'ptr', 'Pp3c12_9180' => 'ppa', 'Pp3c13_19770' => 'ppa', 'Pp3c14_22950' => 'ppa', 'Pp3c16_12160' => 'ppa', 'Pp3c27_7820' => 'ppa', 'Pp3c2_3490' => 'ppa', 'Pp3c3_23700' => 'ppa', 'Pp3c3_36520' => 'ppa', 'Pp3c4_15250' => 'ppa', 'PRCOL_00007002' => 'pco', 'Prupe.1G030600' => 'ppe', 'Prupe.1G030700' => 'ppe', 'Prupe.6G345200' => 'ppe', 'Prupe.8G230300' => 'ppe', 'Prupe.8G230500' => 'ppe', 'Psat3g059600' => 'psa', 'Psat5g200920' => 'psa', 'Psat6g056440' => 'psa', 'Psat6g057360' => 'psa', 'Psat6g134120' => 'psa', 'Psat6g134160' => 'psa', 'Psat7g008640' => 'psa', 'Psat7g185240' => 'psa', 'PSO017G1330' => 'pso', 'PSO063G6097' => 'pso', 'PSO170G0835' => 'pso', 'PSO170G2499' => 'pso', 'PSO210G5058' => 'pso', 'PSO210G6154' => 'pso', 'PSO585G0031' => 'pso', 'PSO832G0264' => 'pso', 'PSO832G4288' => 'pso', 'QL03p027355' => 'qlo', 'QL03p027430' => 'qlo', 'QL04p081380' => 'qlo', 'QL06p015642' => 'qlo', 'QL06p015650' => 'qlo', 'QL06p015686' => 'qlo', 'QL12p042927' => 'qlo', 'QL93p1863_0035' => 'qlo', 'RcHm_v2.0_Chr3g0450581' => 'rch', 'RcHm_v2.0_Chr4g0390371' => 'rch', 'RcHm_v2.0_Chr4g0390381' => 'rch', 'RcHm_v2.0_Chr4g0390491' => 'rch', 'RcHm_v2.0_Chr4g0390501' => 'rch', 'RcHm_v2.0_Chr6g0289231' => 'rch', 'Rhsim04G0190400' => 'rsi', 'Rhsim04G0190500' => 'rsi', 'Rhsim04G0190600' => 'rsi', 'Rhsim13G0031400' => 'rsi', 'Rhsim13G0165600' => 'rsi', 'RhsimUnG0114600' => 'rsi', 'RhsimUnG0114700' => 'rsi', 'Sabra02G0034800' => 'sbr', 'Sabra02G0035100' => 'sbr', 'Sabra05G0168600' => 'sbr', 'Sabra05G0168800' => 'sbr', 'Sabra08G0123700' => 'sbr', 'Sabra10G0031900' => 'sbr', 'Sabra13G0039000' => 'sbr', 'SalBow2G0782' => 'sbo', 'SalBow2G1403' => 'sbo', 'SalBow4G0074' => 'sbo', 'SalBow4G2635' => 'sbo', 'SalBow5G3010' => 'sbo', 'Sc05g0000870' => 'sci', 'Sc05g0000890' => 'sci', 'Sc13g0005000' => 'sci', 'Sc13g0005030' => 'sci', 'Sc19g0003790' => 'sci', 'Sc19g0003800' => 'sci', 'Sed0003467' => 'sed', 'Sed0009355' => 'sed', 'Sed0009894' => 'sed', 'Sed0011972' => 'sed', 'Sed0021483' => 'sed', 'Sed0021750' => 'sed', 'Sed0026279' => 'sed', 'SEGI_05312' => 'sgi', 'SEGI_10112' => 'sgi', 'SEGI_15835' => 'sgi', 'SEGI_30386' => 'sgi', 'SEGI_34122' => 'sgi', 'SEGI_35063' => 'sgi', 'SGA_v2.0_scaffold101G29794' => 'sas', 'SGA_v2.0_scaffold1G00573' => 'sas', 'SGA_v2.0_scaffold79G25637' => 'sas', 'SGA_v2.0_scaffold88G27283' => 'sas', 'SGA_v2.0_scaffold88G27285' => 'sas', 'SGA_v2.0_scaffold88G27331' => 'sas', 'SHI09937' => 'shi', 'SMO119G0302' => 'smo', 'SMO137G0231' => 'smo', 'SMO367G1151' => 'smo', 'Solyc02g082000.3' => 'sly', 'Solyc06g031670.3' => 'sly', 'Solyc06g053810.3' => 'sly', 'Solyc07g025457.1' => 'sly', 'Solyc08g059740.1' => 'sly', 'Solyc08g059750.3' => 'sly', 'Solyc09g083370.3' => 'sly', 'Solyc12g038950.3' => 'sly', 'Sopen02g026630' => 'spe', 'Sopen06g018930' => 'spe', 'Sopen06g018940' => 'spe', 'Sopen08g009460' => 'spe', 'Sopen09g032290' => 'spe', 'Sp1g03080' => 'spa', 'Sp1g03090' => 'spa', 'Sp1g05480' => 'spa', 'Sp2g07860' => 'spa', 'Sp2g08430' => 'spa', 'Sp2g08440' => 'spa', 'Sp2g26200' => 'spa', 'Sp4g13170' => 'spa', 'Sp6g33840' => 'spa', 'SpUn1204_0010' => 'spa', 'TAR365G0908' => 'tar', 'TAR381G1270' => 'tar', 'TAR381G1651' => 'tar', 'TAR625G1131' => 'tar', 'TAR633G0962' => 'tar', 'TAR633G1729' => 'tar', 'TAR633G1864' => 'tar', 'TAR636G0221' => 'tar', 'TAR636G0314' => 'tar', 'TAR636G3202' => 'tar', 'THA.LOC104800805' => 'tha', 'THA.LOC104801096' => 'tha', 'THA.LOC104801555' => 'tha', 'THA.LOC104808491' => 'tha', 'THA.LOC104808595' => 'tha', 'THA.LOC104815985' => 'tha', 'THA.LOC104822250' => 'tha', 'THA.LOC104826071' => 'tha', 'Thecc.01G265200' => 'tca', 'Thecc.01G265300' => 'tca', 'Thecc.01G265700' => 'tca', 'Thecc.03G109100' => 'tca', 'Thecc.04G245900' => 'tca', 'Thecc.04G246000' => 'tca', 'Thhalv10003334m.g' => 'esa', 'Thhalv10005508m.g' => 'esa', 'Thhalv10005643m.g' => 'esa', 'Thhalv10007316m.g' => 'esa', 'Thhalv10009006m.g' => 'esa', 'Thhalv10009309m.g' => 'esa', 'Thhalv10014917m.g' => 'esa', 'Thhalv10014919m.g' => 'esa', 'Thhalv10015393m.g' => 'esa', 'Thhalv10016515m.g' => 'esa', 'Thhalv10029242m.g' => 'esa', 'TPR.G16654' => 'tpr', 'TPR.G20589' => 'tpr', 'TPR.G23029' => 'tpr', 'TPR.G27731' => 'tpr', 'TPR.G28889' => 'tpr', 'TPR.G28899' => 'tpr', 'TPR.G30846' => 'tpr', 'TPR.G5452' => 'tpr', 'TPR.G5713' => 'tpr', 'TPR.G9046' => 'tpr', 'TPR.G9061' => 'tpr', 'TWI09G1075' => 'twi', 'TWI12G0806' => 'twi', 'TWI18G0108' => 'twi', 'TWI53G1361' => 'twi', 'TWI73G0185' => 'twi', 'TWI73G0427' => 'twi', 'unitig_37.g12001' => 'ugi', 'unitig_747.g21660' => 'ugi', 'unitig_748.g7232' => 'ugi', 'unitig_748.g7315' => 'ugi', 'unitig_85.g27262' => 'ugi', 'unitig_92.g28220' => 'ugi', 'vmacro02632' => 'vma', 'vmacro08410' => 'vma', 'vmacro08411' => 'vma', 'vmacro15407' => 'vma', 'VMungo0251G3619' => 'vmu', 'VMungo0720G1204' => 'vmu', 'VMungo0720G1918' => 'vmu', 'VMungo0720G2387' => 'vmu', 'VMungo0720G2961' => 'vmu', 'VMungo1215G2154' => 'vmu', 'VMungo1383G2411' => 'vmu', 'Zm00001eb051130' => 'zma', 'Zm00001eb116830' => 'zma', 'Zm00001eb116850' => 'zma', 'Zm00001eb151740' => 'zma', 'Zm00001eb292360' => 'zma', 'Zm00001eb301640' => 'zma' ), 'gf_id' => 'HOM05D000856', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000856' ), 'data_identifier' => 'HOM05D000856', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000856', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p00010' => 'bna', 'A03p04160' => 'bna', 'A03p17160' => 'bna', 'A04p23370' => 'bna', 'A05p14860' => 'bna', 'A08p37020' => 'bna', 'A09p08050' => 'bna', 'A09p66800' => 'bna', 'A09p67940' => 'bna', 'A10p02680' => 'bna', 'A10p05320' => 'bna', 'Aa31LG1G20560' => 'aar', 'Aa31LG1G20610' => 'aar', 'Aa31LG1G7810' => 'aar', 'Aa31LG5G3590' => 'aar', 'Aa31LG5G6140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3819' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4683' => 'aag', 'Actinidia04480' => 'ach', 'Actinidia05466' => 'ach', 'Actinidia08445' => 'ach', 'Actinidia21170' => 'ach', 'Actinidia24812' => 'ach', 'Actinidia24951' => 'ach', 'Actinidia40088' => 'ach', 'Ah.02g111660' => 'amhyb', 'Ah.11g048900' => 'amhyb', 'Ah.11g049910' => 'amhyb', 'AL1G13870' => 'aly', 'AL1G13880' => 'aly', 'AL1G16760' => 'aly', 'AL390U10020' => 'aly', 'AL4G25520' => 'aly', 'AL6G19890' => 'aly', 'AL6G19900' => 'aly', 'AL6G19910' => 'aly', 'AL8G40100' => 'aly', 'Aqoxy2G03562' => 'aox', 'Aqoxy5G00316' => 'aox', 'Aqoxy5G00926' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1628KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1H403S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2FU6SJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.882I6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8YRY2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YN1SN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AF70II' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZA8L1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F916KL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHRD8H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KTZ8QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S22EMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8M29T' => 'arhy', 'AT1G04270' => 'ath', 'AT1G04280' => 'ath', 'AT1G06750' => 'ath', 'AT1G33850' => 'ath', 'AT2G30630' => 'ath', 'AT5G09490' => 'ath', 'AT5G09500' => 'ath', 'AT5G09510' => 'ath', 'AT5G43640' => 'ath', 'AT5G63070' => 'ath', 'ATR0605G315' => 'atr', 'Atru.chr11.175' => 'acertr', 'Atru.chr11.653' => 'acertr', 'Atru.chr3.1616' => 'acertr', 'Atru.chr4.2230' => 'acertr', 'Atru.chr4.2232' => 'acertr', 'Atru.chr5.1598' => 'acertr', 'Atru.chr5.1600' => 'acertr', 'Atru.chr5.2188' => 'acertr', 'AUR62008326' => 'cqu', 'AUR62011922' => 'cqu', 'AUR62011924' => 'cqu', 'AUR62021771' => 'cqu', 'AUR62032237' => 'cqu', 'AUR62032240' => 'cqu', 'BcaB01g05572' => 'bca', 'BcaB02g10337' => 'bca', 'BcaB04g19944' => 'bca', 'BcaB05g21548' => 'bca', 'BcaB05g21549' => 'bca', 'BcaB05g23227' => 'bca', 'BcaB06g26256' => 'bca', 'BcaB06g26257' => 'bca', 'BcaB06g28379' => 'bca', 'BcaC02g11159' => 'bca', 'BcaC03g13258' => 'bca', 'BcaC03g13259' => 'bca', 'BcaC05g24456' => 'bca', 'BcaC05g24457' => 'bca', 'BcaC07g36922' => 'bca', 'BcaC07g36923' => 'bca', 'BcaC07g42050' => 'bca', 'BcaC07g42176' => 'bca', 'BcaC07g42195' => 'bca', 'BcaC07g42196' => 'bca', 'BcaNung06674' => 'bca', 'BolC2t06351H' => 'bol', 'BolC2t06352H' => 'bol', 'BolC3t12993H' => 'bol', 'BolC4t23525H' => 'bol', 'BolC4t27475H' => 'bol', 'BolC5t29025H' => 'bol', 'BolC5t29026H' => 'bol', 'BolC8t46898H' => 'bol', 'BolC8t46899H' => 'bol', 'BolC8t52630H' => 'bol', 'BolC8t52765H' => 'bol', 'BolC9t53824H' => 'bol', 'BraA03t09760Z' => 'bra', 'BraA03t10990Z' => 'bra', 'BraA05t20413Z' => 'bra', 'BraA08t35602Z' => 'bra', 'BraA09t36458Z' => 'bra', 'BraA09t42018Z' => 'bra', 'BraA09t42129Z' => 'bra', 'BraA10t42536Z' => 'bra', 'BraA10t42537Z' => 'bra', 'C01p10690' => 'bna', 'C02p03890' => 'bna', 'C02p03900' => 'bna', 'C03p04620' => 'bna', 'C04p19870' => 'bna', 'C04p59670' => 'bna', 'C05p02460' => 'bna', 'C05p02470' => 'bna', 'C08p00980' => 'bna', 'C08p00990' => 'bna', 'C08p51030' => 'bna', 'C08p52360' => 'bna', 'C09p09120' => 'bna', 'CAN.G19.15' => 'can', 'CAN.G251.10' => 'can', 'CAN.G251.9' => 'can', 'CAN.G398.24' => 'can', 'CAN.G410.32' => 'can', 'CAN.G881.2' => 'can', 'CANSAT01G3025' => 'cansat', 'CANSAT78G1211' => 'cansat', 'CANSAT78G1218' => 'cansat', 'CANSAT78G1521' => 'cansat', 'CANSAT78G1670' => 'cansat', 'CARHR003600' => 'chi', 'CARHR003610' => 'chi', 'CARHR006290' => 'chi', 'CARHR006430' => 'chi', 'CARHR124110' => 'chi', 'CARHR203870' => 'chi', 'CARHR203880' => 'chi', 'CARHR203890' => 'chi', 'CARHR276880' => 'chi', 'Carub.0001s0346' => 'cru', 'Carub.0001s0347' => 'cru', 'Carub.0001s0607' => 'cru', 'Carub.0003s2768' => 'cru', 'Carub.0003s2769' => 'cru', 'Carub.0004s1178' => 'cru', 'Carub.0006s0806' => 'cru', 'Carub.0006s0807' => 'cru', 'Carub.0006s0808' => 'cru', 'Carub.0008s0501' => 'cru', 'Carub.0008s2379' => 'cru', 'Ca_08655_v3' => 'car', 'Ca_08922_v3' => 'car', 'Ca_08923_v3' => 'car', 'Ca_09119_v3' => 'car', 'Ca_09703_v3' => 'car', 'Ca_09705_v3' => 'car', 'Ca_09835_v3' => 'car', 'Ca_26403_v3' => 'car', 'Ca_30719_v3' => 'car', 'CBR_g17958' => 'cbr', 'CBR_g40516' => 'cbr', 'Cc00_g05350' => 'ccan', 'Cc01_g18690' => 'ccan', 'Cc03_g04830' => 'ccan', 'Cc03_g04850' => 'ccan', 'CDE02G4469' => 'cde', 'CDE06G0883' => 'cde', 'CDE06G1295' => 'cde', 'CDE06G1390' => 'cde', 'CDE07G0584' => 'cde', 'CDE07G1084' => 'cde', 'CDE08G1259' => 'cde', 'Cfa002341' => 'cfa', 'Cfa024337' => 'cfa', 'Ciclev10004749m.g' => 'ccl', 'Ciclev10006127m.g' => 'ccl', 'Ciclev10019720m.g' => 'ccl', 'Ciclev10022652m.g' => 'ccl', 'CiPaw.01G190400' => 'cil', 'CiPaw.01G190500' => 'cil', 'CiPaw.02G116400' => 'cil', 'CiPaw.02G116500' => 'cil', 'CiPaw.04G183000' => 'cil', 'CiPaw.04G183300' => 'cil', 'ClCG05G004610' => 'cla', 'ClCG05G004620' => 'cla', 'ClCG06G006730' => 'cla', 'ClCG06G006740' => 'cla', 'ClCG11G003690' => 'cla', 'COL.COLO4_08276' => 'col', 'COL.COLO4_08277' => 'col', 'COL.COLO4_15787' => 'col', 'COL.COLO4_15789' => 'col', 'Cpa.g.c44815' => 'cpa', 'Cpa.g.sc52.144' => 'cpa', 'Cpa.g.sc58.46' => 'cpa', 'Cpa.g.sc58.47' => 'cpa', 'Cre08.g360900' => 'cre', 'CsaV3_2G013030' => 'csa', 'CsaV3_2G013050' => 'csa', 'CsaV3_2G015620' => 'csa', 'CsaV3_3G012590' => 'csa', 'CsaV3_3G012600' => 'csa', 'CSS0001641' => 'camsi', 'CSS0008310' => 'camsi', 'CSS0013011' => 'camsi', 'CSS0017147' => 'camsi', 'CSS0022970' => 'camsi', 'CSS0025655' => 'camsi', 'CSS0028665' => 'camsi', 'CSS0029117' => 'camsi', 'CSS0032024' => 'camsi', 'CSS0039681' => 'camsi', 'CSS0046516' => 'camsi', 'CSS0050307' => 'camsi', 'DCAR_005871' => 'dca', 'DCAR_007342' => 'dca', 'DCAR_024228' => 'dca', 'DCAR_027277' => 'dca', 'DCAR_030718' => 'dca', 'Dinv20287' => 'din', 'Dinv22461' => 'din', 'Dinv22464' => 'din', 'Dinv29912' => 'din', 'Dinv29913' => 'din', 'Dinv34580' => 'din', 'Dinv34582' => 'din', 'Dinv44632' => 'din', 'Duzib052G0266' => 'dzi', 'Duzib133G0907' => 'dzi', 'Duzib133G1034' => 'dzi', 'Duzib138G0207' => 'dzi', 'Duzib138G0491' => 'dzi', 'Duzib151G0812' => 'dzi', 'Duzib151G1166' => 'dzi', 'Duzib168G0192' => 'dzi', 'Duzib211G0077' => 'dzi', 'Duzib212G0429' => 'dzi', 'Duzib212G0472' => 'dzi', 'ECA233G2617' => 'eca', 'ECA236G4188' => 'eca', 'ECA240G0936' => 'eca', 'ECA240G1129' => 'eca', 'ECA247G0623' => 'eca', 'EL10Ac5g10451' => 'bvu', 'EL10Ac5g10453' => 'bvu', 'EL10Ac5g10894' => 'bvu', 'Eucgr.H00192' => 'egr', 'Eucgr.H00193' => 'egr', 'Eucgr.H00194' => 'egr', 'Eucgr.J01562' => 'egr', 'Eucgr.K03301' => 'egr', 'FAN02G0632' => 'fan', 'FAN05G5378' => 'fan', 'FAN09G3247' => 'fan', 'FAN12G0435' => 'fan', 'FAN12G2426' => 'fan', 'FAN14G1707' => 'fan', 'FAN14G4725' => 'fan', 'FAN15G2071' => 'fan', 'FAN17G3065' => 'fan', 'FAN19G1376' => 'fan', 'FAN20G0354' => 'fan', 'FAN20G2429' => 'fan', 'FAN20G2658' => 'fan', 'FAN24G2343' => 'fan', 'FAN27G2362' => 'fan', 'FAN28G1765' => 'fan', 'FvH4_1g16020' => 'fve', 'FvH4_2g04890' => 'fve', 'FvH4_2g22270' => 'fve', 'FvH4_4g02630' => 'fve', 'FvH4_4g02640' => 'fve', 'FvH4_6g02650' => 'fve', 'Glyma.02G140600' => 'gma', 'Glyma.03G159900' => 'gma', 'Glyma.05G234800' => 'gma', 'Glyma.07G269600' => 'gma', 'Glyma.08G042300' => 'gma', 'Glyma.10G033500' => 'gma', 'Glyma.10G185200' => 'gma', 'Glyma.17G004300' => 'gma', 'Glyma.19G161900' => 'gma', 'Glyma.20G205100' => 'gma', 'Glyma.20G205200' => 'gma', 'Gohir.A01G139101' => 'ghi', 'Gohir.A02G035600' => 'ghi', 'Gohir.A02G117901' => 'ghi', 'Gohir.A07G210100' => 'ghi', 'Gohir.A07G210200' => 'ghi', 'Gohir.A08G061100' => 'ghi', 'Gohir.A09G223000' => 'ghi', 'Gohir.A09G223100' => 'ghi', 'Gohir.A10G113900' => 'ghi', 'Gohir.A10G114000' => 'ghi', 'Gohir.D02G042300' => 'ghi', 'Gohir.D07G216100' => 'ghi', 'Gohir.D07G216200' => 'ghi', 'Gohir.D08G070400' => 'ghi', 'Gohir.D09G225000' => 'ghi', 'Gohir.D09G225100' => 'ghi', 'Gohir.D10G152300' => 'ghi', 'Gohir.D10G153200' => 'ghi', 'Gohir.D11G133701' => 'ghi', 'Gorai.004G074100' => 'gra', 'Gorai.005G046800' => 'gra', 'Gorai.006G246500' => 'gra', 'Gorai.006G246600' => 'gra', 'Gorai.007G142900' => 'gra', 'Gorai.011G171000' => 'gra', 'Gorai.011G171100' => 'gra', 'Gorai.013G104300' => 'gra', 'Gorai.013G104400' => 'gra', 'GSVIVG01000754001' => 'vvi', 'GSVIVG01000756001' => 'vvi', 'GSVIVG01010903001' => 'vvi', 'GSVIVG01017623001' => 'vvi', 'GSVIVG01018113001' => 'vvi', 'GSVIVG01018116001' => 'vvi', 'GSVIVG01018118001' => 'vvi', 'HanXRQChr03g0076211' => 'han', 'HanXRQChr03g0092431' => 'han', 'HanXRQChr03g0092441' => 'han', 'HanXRQChr03g0092591' => 'han', 'HanXRQChr03g0092671' => 'han', 'HanXRQChr03g0092681' => 'han', 'HanXRQChr03g0092691' => 'han', 'HanXRQChr03g0092701' => 'han', 'HanXRQChr03g0092721' => 'han', 'HanXRQChr03g0092731' => 'han', 'HanXRQChr04g0113681' => 'han', 'HanXRQChr10g0281371' => 'han', 'HanXRQChr11g0337141' => 'han', 'HanXRQChr13g0424521' => 'han', 'HanXRQChr13g0424531' => 'han', 'HanXRQChr13g0424541' => 'han', 'HanXRQChr16g0498221' => 'han', 'Haze_04377' => 'cav', 'Haze_11298' => 'cav', 'Haze_24547' => 'cav', 'Haze_24550' => 'cav', 'Haze_26587' => 'cav', 'Hma1.2p1_0650F.1_g195410' => 'hma', 'Hma1.2p1_0893F.1_g233470' => 'hma', 'HPP92_006508' => 'vpl', 'HPP92_024780' => 'vpl', 'Hund02688' => 'sun', 'Hund09380' => 'sun', 'Hund09381' => 'sun', 'Hund09832' => 'sun', 'Hund09833' => 'sun', 'Hund11351' => 'sun', 'Hund11513' => 'sun', 'Lalb_Chr06g0162591' => 'lal', 'Lalb_Chr06g0162601' => 'lal', 'Lalb_Chr06g0169321' => 'lal', 'Lalb_Chr09g0330951' => 'lal', 'Lalb_Chr16g0387631' => 'lal', 'Lalb_Chr21g0306241' => 'lal', 'Lalb_Chr25g0290051' => 'lal', 'Lalb_Chr25g0290061' => 'lal', 'Lalb_Chr25g0290071' => 'lal', 'Lj1g0003876' => 'lja', 'Lj1P1207T36' => 'lonja', 'Lj2C1156G12' => 'lonja', 'Lj3A793G39' => 'lonja', 'Lj3C580G2' => 'lonja', 'Lj3C780G2' => 'lonja', 'Lj3C780T4' => 'lonja', 'Lj3C793G9' => 'lonja', 'Lj4g0012960' => 'lja', 'Lj5g0021252' => 'lja', 'Lj5g0021484' => 'lja', 'Lj5g0024528' => 'lja', 'Lj6A399T12' => 'lonja', 'Lj6A656G65' => 'lonja', 'Lsat_1_v5_gn_3_125500' => 'lsa', 'Lsat_1_v5_gn_3_125540' => 'lsa', 'Lsat_1_v5_gn_5_72701' => 'lsa', 'Lsat_1_v5_gn_8_91560' => 'lsa', 'Lsat_1_v5_gn_9_9640' => 'lsa', 'Manes.01G200600' => 'mes', 'Manes.01G200700' => 'mes', 'Manes.03G168900' => 'mes', 'Manes.03G169000' => 'mes', 'Manes.05G085801' => 'mes', 'Manes.05G086200' => 'mes', 'Manes.15G036700' => 'mes', 'Manes.15G036900' => 'mes', 'Mapoly0004s0172' => 'mpo', 'Mapoly0023s0001' => 'mpo', 'Mapoly0142s0012' => 'mpo', 'MBI01_g32854_MAGBIO' => 'mbi', 'MBI11_g24427_MAGBIO' => 'mbi', 'MBI11_g47319_MAGBIO' => 'mbi', 'MCO01G433' => 'mco', 'MD00G1187800' => 'mdo', 'MD04G1226500' => 'mdo', 'MD05G1203900' => 'mdo', 'MD10G1191100' => 'mdo', 'MD12G1243500' => 'mdo', 'MD13G1207000' => 'mdo', 'MD13G1207100' => 'mdo', 'MD16G1208600' => 'mdo', 'Medtr1g050352' => 'mtr', 'Medtr1g070385' => 'mtr', 'Medtr1g070450' => 'mtr', 'Medtr1g075200' => 'mtr', 'Medtr1g075250' => 'mtr', 'Medtr1g075260' => 'mtr', 'Medtr1g475250' => 'mtr', 'Medtr4g075450' => 'mtr', 'Medtr7g096300' => 'mtr', 'Medtr8g105110' => 'mtr', 'MELO3C006470.2' => 'cme', 'MELO3C006471.2' => 'cme', 'MELO3C020772.2' => 'cme', 'MELO3C026780.2' => 'cme', 'MELO3C026781.2' => 'cme', 'Migut.D00390' => 'egut', 'Migut.G00435' => 'egut', 'Migut.G00436' => 'egut', 'Migut.G00718' => 'egut', 'MSTRG.21891' => 'ama', 'MSTRG.26910' => 'ama', 'MSTRG.4099' => 'ama', 'MSTRG.9925' => 'ama', 'Nitab4.5_0000165g0010' => 'nta', 'Nitab4.5_0000209g0180' => 'nta', 'Nitab4.5_0000244g0440' => 'nta', 'Nitab4.5_0000525g0220' => 'nta', 'Nitab4.5_0001597g0020' => 'nta', 'Nitab4.5_0001878g0040' => 'nta', 'Nitab4.5_0001878g0060' => 'nta', 'Nitab4.5_0002838g0100' => 'nta', 'Nitab4.5_0002838g0120' => 'nta', 'Nitab4.5_0004798g0030' => 'nta', 'Nitab4.5_0005420g0010' => 'nta', 'Nitab4.5_0005507g0010' => 'nta', 'Nitab4.5_0005574g0020' => 'nta', 'Nitab4.5_0005838g0010' => 'nta', 'Nitab4.5_0010580g0020' => 'nta', 'Nn1g02599' => 'nnu', 'Nn1g02608' => 'nnu', 'Nn3g17742' => 'nnu', 'Nn3g19534' => 'nnu', 'Nn3g19535' => 'nnu', 'Oeu008790.1' => 'oeu', 'Oeu008792.1' => 'oeu', 'Oeu032590.1' => 'oeu', 'Oeu035349.1' => 'oeu', 'Oeu049791.1' => 'oeu', 'Os01g0774500' => 'osa', 'Os03g0628800' => 'osa', 'Os03g0798600' => 'osa', 'Os05g0508800' => 'osa', 'Peaxi162Scf00036g02018' => 'pax', 'Peaxi162Scf00578g00032' => 'pax', 'Peaxi162Scf00578g00317' => 'pax', 'Peaxi162Scf00785g00114' => 'pax', 'Peaxi162Scf00813g00119' => 'pax', 'Peaxi162Scf00906g00227' => 'pax', 'PGR004G0875' => 'pgr', 'PGR004G2424' => 'pgr', 'PGR031G1239' => 'pgr', 'PGR031G2474' => 'pgr', 'PGR044G0423' => 'pgr', 'PGSC0003DMG400001128' => 'stu', 'PGSC0003DMG400007336' => 'stu', 'PGSC0003DMG400016318' => 'stu', 'PGSC0003DMG400016319' => 'stu', 'PGSC0003DMG400018074' => 'stu', 'Phvul.001G157700' => 'pvu', 'Phvul.002G148550' => 'pvu', 'Phvul.002G320200' => 'pvu', 'Phvul.003G089200' => 'pvu', 'Phvul.007G126000' => 'pvu', 'Phvul.007G126100' => 'pvu', 'Phvul.007G178000' => 'pvu', 'Phvul.007G178200' => 'pvu', 'Potri.002G043000' => 'ptr', 'Potri.002G043200' => 'ptr', 'Potri.003G123750' => 'ptr', 'Potri.005G055401' => 'ptr', 'Potri.005G219700' => 'ptr', 'Potri.005G220000' => 'ptr', 'Potri.008G161901' => 'ptr', 'Potri.008G162000' => 'ptr', 'Potri.008G162400' => 'ptr', 'Potri.010G076900' => 'ptr', 'Pp3c12_9180' => 'ppa', 'Pp3c13_19770' => 'ppa', 'Pp3c14_22950' => 'ppa', 'Pp3c16_12160' => 'ppa', 'Pp3c27_7820' => 'ppa', 'Pp3c2_3490' => 'ppa', 'Pp3c3_23700' => 'ppa', 'Pp3c3_36520' => 'ppa', 'Pp3c4_15250' => 'ppa', 'PRCOL_00007002' => 'pco', 'Prupe.1G030600' => 'ppe', 'Prupe.1G030700' => 'ppe', 'Prupe.6G345200' => 'ppe', 'Prupe.8G230300' => 'ppe', 'Prupe.8G230500' => 'ppe', 'Psat3g059600' => 'psa', 'Psat5g200920' => 'psa', 'Psat6g056440' => 'psa', 'Psat6g057360' => 'psa', 'Psat6g134120' => 'psa', 'Psat6g134160' => 'psa', 'Psat7g008640' => 'psa', 'Psat7g185240' => 'psa', 'PSO017G1330' => 'pso', 'PSO063G6097' => 'pso', 'PSO170G0835' => 'pso', 'PSO170G2499' => 'pso', 'PSO210G5058' => 'pso', 'PSO210G6154' => 'pso', 'PSO585G0031' => 'pso', 'PSO832G0264' => 'pso', 'PSO832G4288' => 'pso', 'QL03p027355' => 'qlo', 'QL03p027430' => 'qlo', 'QL04p081380' => 'qlo', 'QL06p015642' => 'qlo', 'QL06p015650' => 'qlo', 'QL06p015686' => 'qlo', 'QL12p042927' => 'qlo', 'QL93p1863_0035' => 'qlo', 'RcHm_v2.0_Chr3g0450581' => 'rch', 'RcHm_v2.0_Chr4g0390371' => 'rch', 'RcHm_v2.0_Chr4g0390381' => 'rch', 'RcHm_v2.0_Chr4g0390491' => 'rch', 'RcHm_v2.0_Chr4g0390501' => 'rch', 'RcHm_v2.0_Chr6g0289231' => 'rch', 'Rhsim04G0190400' => 'rsi', 'Rhsim04G0190500' => 'rsi', 'Rhsim04G0190600' => 'rsi', 'Rhsim13G0031400' => 'rsi', 'Rhsim13G0165600' => 'rsi', 'RhsimUnG0114600' => 'rsi', 'RhsimUnG0114700' => 'rsi', 'Sabra02G0034800' => 'sbr', 'Sabra02G0035100' => 'sbr', 'Sabra05G0168600' => 'sbr', 'Sabra05G0168800' => 'sbr', 'Sabra08G0123700' => 'sbr', 'Sabra10G0031900' => 'sbr', 'Sabra13G0039000' => 'sbr', 'SalBow2G0782' => 'sbo', 'SalBow2G1403' => 'sbo', 'SalBow4G0074' => 'sbo', 'SalBow4G2635' => 'sbo', 'SalBow5G3010' => 'sbo', 'Sc05g0000870' => 'sci', 'Sc05g0000890' => 'sci', 'Sc13g0005000' => 'sci', 'Sc13g0005030' => 'sci', 'Sc19g0003790' => 'sci', 'Sc19g0003800' => 'sci', 'Sed0003467' => 'sed', 'Sed0009355' => 'sed', 'Sed0009894' => 'sed', 'Sed0011972' => 'sed', 'Sed0021483' => 'sed', 'Sed0021750' => 'sed', 'Sed0026279' => 'sed', 'SEGI_05312' => 'sgi', 'SEGI_10112' => 'sgi', 'SEGI_15835' => 'sgi', 'SEGI_30386' => 'sgi', 'SEGI_34122' => 'sgi', 'SEGI_35063' => 'sgi', 'SGA_v2.0_scaffold101G29794' => 'sas', 'SGA_v2.0_scaffold1G00573' => 'sas', 'SGA_v2.0_scaffold79G25637' => 'sas', 'SGA_v2.0_scaffold88G27283' => 'sas', 'SGA_v2.0_scaffold88G27285' => 'sas', 'SGA_v2.0_scaffold88G27331' => 'sas', 'SHI09937' => 'shi', 'SMO119G0302' => 'smo', 'SMO137G0231' => 'smo', 'SMO367G1151' => 'smo', 'Solyc02g082000.3' => 'sly', 'Solyc06g031670.3' => 'sly', 'Solyc06g053810.3' => 'sly', 'Solyc07g025457.1' => 'sly', 'Solyc08g059740.1' => 'sly', 'Solyc08g059750.3' => 'sly', 'Solyc09g083370.3' => 'sly', 'Solyc12g038950.3' => 'sly', 'Sopen02g026630' => 'spe', 'Sopen06g018930' => 'spe', 'Sopen06g018940' => 'spe', 'Sopen08g009460' => 'spe', 'Sopen09g032290' => 'spe', 'Sp1g03080' => 'spa', 'Sp1g03090' => 'spa', 'Sp1g05480' => 'spa', 'Sp2g07860' => 'spa', 'Sp2g08430' => 'spa', 'Sp2g08440' => 'spa', 'Sp2g26200' => 'spa', 'Sp4g13170' => 'spa', 'Sp6g33840' => 'spa', 'SpUn1204_0010' => 'spa', 'TAR365G0908' => 'tar', 'TAR381G1270' => 'tar', 'TAR381G1651' => 'tar', 'TAR625G1131' => 'tar', 'TAR633G0962' => 'tar', 'TAR633G1729' => 'tar', 'TAR633G1864' => 'tar', 'TAR636G0221' => 'tar', 'TAR636G0314' => 'tar', 'TAR636G3202' => 'tar', 'THA.LOC104800805' => 'tha', 'THA.LOC104801096' => 'tha', 'THA.LOC104801555' => 'tha', 'THA.LOC104808491' => 'tha', 'THA.LOC104808595' => 'tha', 'THA.LOC104815985' => 'tha', 'THA.LOC104822250' => 'tha', 'THA.LOC104826071' => 'tha', 'Thecc.01G265200' => 'tca', 'Thecc.01G265300' => 'tca', 'Thecc.01G265700' => 'tca', 'Thecc.03G109100' => 'tca', 'Thecc.04G245900' => 'tca', 'Thecc.04G246000' => 'tca', 'Thhalv10003334m.g' => 'esa', 'Thhalv10005508m.g' => 'esa', 'Thhalv10005643m.g' => 'esa', 'Thhalv10007316m.g' => 'esa', 'Thhalv10009006m.g' => 'esa', 'Thhalv10009309m.g' => 'esa', 'Thhalv10014917m.g' => 'esa', 'Thhalv10014919m.g' => 'esa', 'Thhalv10015393m.g' => 'esa', 'Thhalv10016515m.g' => 'esa', 'Thhalv10029242m.g' => 'esa', 'TPR.G16654' => 'tpr', 'TPR.G20589' => 'tpr', 'TPR.G23029' => 'tpr', 'TPR.G27731' => 'tpr', 'TPR.G28889' => 'tpr', 'TPR.G28899' => 'tpr', 'TPR.G30846' => 'tpr', 'TPR.G5452' => 'tpr', 'TPR.G5713' => 'tpr', 'TPR.G9046' => 'tpr', 'TPR.G9061' => 'tpr', 'TWI09G1075' => 'twi', 'TWI12G0806' => 'twi', 'TWI18G0108' => 'twi', 'TWI53G1361' => 'twi', 'TWI73G0185' => 'twi', 'TWI73G0427' => 'twi', 'unitig_37.g12001' => 'ugi', 'unitig_747.g21660' => 'ugi', 'unitig_748.g7232' => 'ugi', 'unitig_748.g7315' => 'ugi', 'unitig_85.g27262' => 'ugi', 'unitig_92.g28220' => 'ugi', 'vmacro02632' => 'vma', 'vmacro08410' => 'vma', 'vmacro08411' => 'vma', 'vmacro15407' => 'vma', 'VMungo0251G3619' => 'vmu', 'VMungo0720G1204' => 'vmu', 'VMungo0720G1918' => 'vmu', 'VMungo0720G2387' => 'vmu', 'VMungo0720G2961' => 'vmu', 'VMungo1215G2154' => 'vmu', 'VMungo1383G2411' => 'vmu', 'Zm00001eb051130' => 'zma', 'Zm00001eb116830' => 'zma', 'Zm00001eb116850' => 'zma', 'Zm00001eb151740' => 'zma', 'Zm00001eb292360' => 'zma', 'Zm00001eb301640' => 'zma' ) $gf_id = 'HOM05D000856' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000856' ) $data_identifier = 'HOM05D000856' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 13, 'ath' => (int) 10, 'atr' => (int) 1, 'acertr' => (int) 8, 'cqu' => (int) 6, 'bca' => (int) 21, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 11, 'car' => (int) 9, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 8, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 5, 'fan' => (int) 16, 'fve' => (int) 6, 'gma' => (int) 11, 'ghi' => (int) 19, 'gra' => (int) 9, 'vvi' => (int) 7, 'han' => (int) 17, 'cav' => (int) 5, 'hma' => (int) 2, 'vpl' => (int) 2, 'sun' => (int) 7, 'lal' => (int) 9, 'lja' => (int) 5, 'lonja' => (int) 9, 'lsa' => (int) 5, 'mes' => (int) 8, 'mpo' => (int) 3, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 10, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 15, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 9, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 9, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 6, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 5, 'spa' => (int) 10, 'tar' => (int) 10, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 11, 'tpr' => (int) 11, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 4, 'vmu' => (int) 7, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb301640' $species_info = array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ) $local_species = 'acertr' $disabled = '' $selected = ''
include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000856', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p00010' => 'bna', 'A03p04160' => 'bna', 'A03p17160' => 'bna', 'A04p23370' => 'bna', 'A05p14860' => 'bna', 'A08p37020' => 'bna', 'A09p08050' => 'bna', 'A09p66800' => 'bna', 'A09p67940' => 'bna', 'A10p02680' => 'bna', 'A10p05320' => 'bna', 'Aa31LG1G20560' => 'aar', 'Aa31LG1G20610' => 'aar', 'Aa31LG1G7810' => 'aar', 'Aa31LG5G3590' => 'aar', 'Aa31LG5G6140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3819' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4683' => 'aag', 'Actinidia04480' => 'ach', 'Actinidia05466' => 'ach', 'Actinidia08445' => 'ach', 'Actinidia21170' => 'ach', 'Actinidia24812' => 'ach', 'Actinidia24951' => 'ach', 'Actinidia40088' => 'ach', 'Ah.02g111660' => 'amhyb', 'Ah.11g048900' => 'amhyb', 'Ah.11g049910' => 'amhyb', 'AL1G13870' => 'aly', 'AL1G13880' => 'aly', 'AL1G16760' => 'aly', 'AL390U10020' => 'aly', 'AL4G25520' => 'aly', 'AL6G19890' => 'aly', 'AL6G19900' => 'aly', 'AL6G19910' => 'aly', 'AL8G40100' => 'aly', 'Aqoxy2G03562' => 'aox', 'Aqoxy5G00316' => 'aox', 'Aqoxy5G00926' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1628KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1H403S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2FU6SJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.882I6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8YRY2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YN1SN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AF70II' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZA8L1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F916KL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHRD8H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KTZ8QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S22EMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8M29T' => 'arhy', 'AT1G04270' => 'ath', 'AT1G04280' => 'ath', 'AT1G06750' => 'ath', 'AT1G33850' => 'ath', 'AT2G30630' => 'ath', 'AT5G09490' => 'ath', 'AT5G09500' => 'ath', 'AT5G09510' => 'ath', 'AT5G43640' => 'ath', 'AT5G63070' => 'ath', 'ATR0605G315' => 'atr', 'Atru.chr11.175' => 'acertr', 'Atru.chr11.653' => 'acertr', 'Atru.chr3.1616' => 'acertr', 'Atru.chr4.2230' => 'acertr', 'Atru.chr4.2232' => 'acertr', 'Atru.chr5.1598' => 'acertr', 'Atru.chr5.1600' => 'acertr', 'Atru.chr5.2188' => 'acertr', 'AUR62008326' => 'cqu', 'AUR62011922' => 'cqu', 'AUR62011924' => 'cqu', 'AUR62021771' => 'cqu', 'AUR62032237' => 'cqu', 'AUR62032240' => 'cqu', 'BcaB01g05572' => 'bca', 'BcaB02g10337' => 'bca', 'BcaB04g19944' => 'bca', 'BcaB05g21548' => 'bca', 'BcaB05g21549' => 'bca', 'BcaB05g23227' => 'bca', 'BcaB06g26256' => 'bca', 'BcaB06g26257' => 'bca', 'BcaB06g28379' => 'bca', 'BcaC02g11159' => 'bca', 'BcaC03g13258' => 'bca', 'BcaC03g13259' => 'bca', 'BcaC05g24456' => 'bca', 'BcaC05g24457' => 'bca', 'BcaC07g36922' => 'bca', 'BcaC07g36923' => 'bca', 'BcaC07g42050' => 'bca', 'BcaC07g42176' => 'bca', 'BcaC07g42195' => 'bca', 'BcaC07g42196' => 'bca', 'BcaNung06674' => 'bca', 'BolC2t06351H' => 'bol', 'BolC2t06352H' => 'bol', 'BolC3t12993H' => 'bol', 'BolC4t23525H' => 'bol', 'BolC4t27475H' => 'bol', 'BolC5t29025H' => 'bol', 'BolC5t29026H' => 'bol', 'BolC8t46898H' => 'bol', 'BolC8t46899H' => 'bol', 'BolC8t52630H' => 'bol', 'BolC8t52765H' => 'bol', 'BolC9t53824H' => 'bol', 'BraA03t09760Z' => 'bra', 'BraA03t10990Z' => 'bra', 'BraA05t20413Z' => 'bra', 'BraA08t35602Z' => 'bra', 'BraA09t36458Z' => 'bra', 'BraA09t42018Z' => 'bra', 'BraA09t42129Z' => 'bra', 'BraA10t42536Z' => 'bra', 'BraA10t42537Z' => 'bra', 'C01p10690' => 'bna', 'C02p03890' => 'bna', 'C02p03900' => 'bna', 'C03p04620' => 'bna', 'C04p19870' => 'bna', 'C04p59670' => 'bna', 'C05p02460' => 'bna', 'C05p02470' => 'bna', 'C08p00980' => 'bna', 'C08p00990' => 'bna', 'C08p51030' => 'bna', 'C08p52360' => 'bna', 'C09p09120' => 'bna', 'CAN.G19.15' => 'can', 'CAN.G251.10' => 'can', 'CAN.G251.9' => 'can', 'CAN.G398.24' => 'can', 'CAN.G410.32' => 'can', 'CAN.G881.2' => 'can', 'CANSAT01G3025' => 'cansat', 'CANSAT78G1211' => 'cansat', 'CANSAT78G1218' => 'cansat', 'CANSAT78G1521' => 'cansat', 'CANSAT78G1670' => 'cansat', 'CARHR003600' => 'chi', 'CARHR003610' => 'chi', 'CARHR006290' => 'chi', 'CARHR006430' => 'chi', 'CARHR124110' => 'chi', 'CARHR203870' => 'chi', 'CARHR203880' => 'chi', 'CARHR203890' => 'chi', 'CARHR276880' => 'chi', 'Carub.0001s0346' => 'cru', 'Carub.0001s0347' => 'cru', 'Carub.0001s0607' => 'cru', 'Carub.0003s2768' => 'cru', 'Carub.0003s2769' => 'cru', 'Carub.0004s1178' => 'cru', 'Carub.0006s0806' => 'cru', 'Carub.0006s0807' => 'cru', 'Carub.0006s0808' => 'cru', 'Carub.0008s0501' => 'cru', 'Carub.0008s2379' => 'cru', 'Ca_08655_v3' => 'car', 'Ca_08922_v3' => 'car', 'Ca_08923_v3' => 'car', 'Ca_09119_v3' => 'car', 'Ca_09703_v3' => 'car', 'Ca_09705_v3' => 'car', 'Ca_09835_v3' => 'car', 'Ca_26403_v3' => 'car', 'Ca_30719_v3' => 'car', 'CBR_g17958' => 'cbr', 'CBR_g40516' => 'cbr', 'Cc00_g05350' => 'ccan', 'Cc01_g18690' => 'ccan', 'Cc03_g04830' => 'ccan', 'Cc03_g04850' => 'ccan', 'CDE02G4469' => 'cde', 'CDE06G0883' => 'cde', 'CDE06G1295' => 'cde', 'CDE06G1390' => 'cde', 'CDE07G0584' => 'cde', 'CDE07G1084' => 'cde', 'CDE08G1259' => 'cde', 'Cfa002341' => 'cfa', 'Cfa024337' => 'cfa', 'Ciclev10004749m.g' => 'ccl', 'Ciclev10006127m.g' => 'ccl', 'Ciclev10019720m.g' => 'ccl', 'Ciclev10022652m.g' => 'ccl', 'CiPaw.01G190400' => 'cil', 'CiPaw.01G190500' => 'cil', 'CiPaw.02G116400' => 'cil', 'CiPaw.02G116500' => 'cil', 'CiPaw.04G183000' => 'cil', 'CiPaw.04G183300' => 'cil', 'ClCG05G004610' => 'cla', 'ClCG05G004620' => 'cla', 'ClCG06G006730' => 'cla', 'ClCG06G006740' => 'cla', 'ClCG11G003690' => 'cla', 'COL.COLO4_08276' => 'col', 'COL.COLO4_08277' => 'col', 'COL.COLO4_15787' => 'col', 'COL.COLO4_15789' => 'col', 'Cpa.g.c44815' => 'cpa', 'Cpa.g.sc52.144' => 'cpa', 'Cpa.g.sc58.46' => 'cpa', 'Cpa.g.sc58.47' => 'cpa', 'Cre08.g360900' => 'cre', 'CsaV3_2G013030' => 'csa', 'CsaV3_2G013050' => 'csa', 'CsaV3_2G015620' => 'csa', 'CsaV3_3G012590' => 'csa', 'CsaV3_3G012600' => 'csa', 'CSS0001641' => 'camsi', 'CSS0008310' => 'camsi', 'CSS0013011' => 'camsi', 'CSS0017147' => 'camsi', 'CSS0022970' => 'camsi', 'CSS0025655' => 'camsi', 'CSS0028665' => 'camsi', 'CSS0029117' => 'camsi', 'CSS0032024' => 'camsi', 'CSS0039681' => 'camsi', 'CSS0046516' => 'camsi', 'CSS0050307' => 'camsi', 'DCAR_005871' => 'dca', 'DCAR_007342' => 'dca', 'DCAR_024228' => 'dca', 'DCAR_027277' => 'dca', 'DCAR_030718' => 'dca', 'Dinv20287' => 'din', 'Dinv22461' => 'din', 'Dinv22464' => 'din', 'Dinv29912' => 'din', 'Dinv29913' => 'din', 'Dinv34580' => 'din', 'Dinv34582' => 'din', 'Dinv44632' => 'din', 'Duzib052G0266' => 'dzi', 'Duzib133G0907' => 'dzi', 'Duzib133G1034' => 'dzi', 'Duzib138G0207' => 'dzi', 'Duzib138G0491' => 'dzi', 'Duzib151G0812' => 'dzi', 'Duzib151G1166' => 'dzi', 'Duzib168G0192' => 'dzi', 'Duzib211G0077' => 'dzi', 'Duzib212G0429' => 'dzi', 'Duzib212G0472' => 'dzi', 'ECA233G2617' => 'eca', 'ECA236G4188' => 'eca', 'ECA240G0936' => 'eca', 'ECA240G1129' => 'eca', 'ECA247G0623' => 'eca', 'EL10Ac5g10451' => 'bvu', 'EL10Ac5g10453' => 'bvu', 'EL10Ac5g10894' => 'bvu', 'Eucgr.H00192' => 'egr', 'Eucgr.H00193' => 'egr', 'Eucgr.H00194' => 'egr', 'Eucgr.J01562' => 'egr', 'Eucgr.K03301' => 'egr', 'FAN02G0632' => 'fan', 'FAN05G5378' => 'fan', 'FAN09G3247' => 'fan', 'FAN12G0435' => 'fan', 'FAN12G2426' => 'fan', 'FAN14G1707' => 'fan', 'FAN14G4725' => 'fan', 'FAN15G2071' => 'fan', 'FAN17G3065' => 'fan', 'FAN19G1376' => 'fan', 'FAN20G0354' => 'fan', 'FAN20G2429' => 'fan', 'FAN20G2658' => 'fan', 'FAN24G2343' => 'fan', 'FAN27G2362' => 'fan', 'FAN28G1765' => 'fan', 'FvH4_1g16020' => 'fve', 'FvH4_2g04890' => 'fve', 'FvH4_2g22270' => 'fve', 'FvH4_4g02630' => 'fve', 'FvH4_4g02640' => 'fve', 'FvH4_6g02650' => 'fve', 'Glyma.02G140600' => 'gma', 'Glyma.03G159900' => 'gma', 'Glyma.05G234800' => 'gma', 'Glyma.07G269600' => 'gma', 'Glyma.08G042300' => 'gma', 'Glyma.10G033500' => 'gma', 'Glyma.10G185200' => 'gma', 'Glyma.17G004300' => 'gma', 'Glyma.19G161900' => 'gma', 'Glyma.20G205100' => 'gma', 'Glyma.20G205200' => 'gma', 'Gohir.A01G139101' => 'ghi', 'Gohir.A02G035600' => 'ghi', 'Gohir.A02G117901' => 'ghi', 'Gohir.A07G210100' => 'ghi', 'Gohir.A07G210200' => 'ghi', 'Gohir.A08G061100' => 'ghi', 'Gohir.A09G223000' => 'ghi', 'Gohir.A09G223100' => 'ghi', 'Gohir.A10G113900' => 'ghi', 'Gohir.A10G114000' => 'ghi', 'Gohir.D02G042300' => 'ghi', 'Gohir.D07G216100' => 'ghi', 'Gohir.D07G216200' => 'ghi', 'Gohir.D08G070400' => 'ghi', 'Gohir.D09G225000' => 'ghi', 'Gohir.D09G225100' => 'ghi', 'Gohir.D10G152300' => 'ghi', 'Gohir.D10G153200' => 'ghi', 'Gohir.D11G133701' => 'ghi', 'Gorai.004G074100' => 'gra', 'Gorai.005G046800' => 'gra', 'Gorai.006G246500' => 'gra', 'Gorai.006G246600' => 'gra', 'Gorai.007G142900' => 'gra', 'Gorai.011G171000' => 'gra', 'Gorai.011G171100' => 'gra', 'Gorai.013G104300' => 'gra', 'Gorai.013G104400' => 'gra', 'GSVIVG01000754001' => 'vvi', 'GSVIVG01000756001' => 'vvi', 'GSVIVG01010903001' => 'vvi', 'GSVIVG01017623001' => 'vvi', 'GSVIVG01018113001' => 'vvi', 'GSVIVG01018116001' => 'vvi', 'GSVIVG01018118001' => 'vvi', 'HanXRQChr03g0076211' => 'han', 'HanXRQChr03g0092431' => 'han', 'HanXRQChr03g0092441' => 'han', 'HanXRQChr03g0092591' => 'han', 'HanXRQChr03g0092671' => 'han', 'HanXRQChr03g0092681' => 'han', 'HanXRQChr03g0092691' => 'han', 'HanXRQChr03g0092701' => 'han', 'HanXRQChr03g0092721' => 'han', 'HanXRQChr03g0092731' => 'han', 'HanXRQChr04g0113681' => 'han', 'HanXRQChr10g0281371' => 'han', 'HanXRQChr11g0337141' => 'han', 'HanXRQChr13g0424521' => 'han', 'HanXRQChr13g0424531' => 'han', 'HanXRQChr13g0424541' => 'han', 'HanXRQChr16g0498221' => 'han', 'Haze_04377' => 'cav', 'Haze_11298' => 'cav', 'Haze_24547' => 'cav', 'Haze_24550' => 'cav', 'Haze_26587' => 'cav', 'Hma1.2p1_0650F.1_g195410' => 'hma', 'Hma1.2p1_0893F.1_g233470' => 'hma', 'HPP92_006508' => 'vpl', 'HPP92_024780' => 'vpl', 'Hund02688' => 'sun', 'Hund09380' => 'sun', 'Hund09381' => 'sun', 'Hund09832' => 'sun', 'Hund09833' => 'sun', 'Hund11351' => 'sun', 'Hund11513' => 'sun', 'Lalb_Chr06g0162591' => 'lal', 'Lalb_Chr06g0162601' => 'lal', 'Lalb_Chr06g0169321' => 'lal', 'Lalb_Chr09g0330951' => 'lal', 'Lalb_Chr16g0387631' => 'lal', 'Lalb_Chr21g0306241' => 'lal', 'Lalb_Chr25g0290051' => 'lal', 'Lalb_Chr25g0290061' => 'lal', 'Lalb_Chr25g0290071' => 'lal', 'Lj1g0003876' => 'lja', 'Lj1P1207T36' => 'lonja', 'Lj2C1156G12' => 'lonja', 'Lj3A793G39' => 'lonja', 'Lj3C580G2' => 'lonja', 'Lj3C780G2' => 'lonja', 'Lj3C780T4' => 'lonja', 'Lj3C793G9' => 'lonja', 'Lj4g0012960' => 'lja', 'Lj5g0021252' => 'lja', 'Lj5g0021484' => 'lja', 'Lj5g0024528' => 'lja', 'Lj6A399T12' => 'lonja', 'Lj6A656G65' => 'lonja', 'Lsat_1_v5_gn_3_125500' => 'lsa', 'Lsat_1_v5_gn_3_125540' => 'lsa', 'Lsat_1_v5_gn_5_72701' => 'lsa', 'Lsat_1_v5_gn_8_91560' => 'lsa', 'Lsat_1_v5_gn_9_9640' => 'lsa', 'Manes.01G200600' => 'mes', 'Manes.01G200700' => 'mes', 'Manes.03G168900' => 'mes', 'Manes.03G169000' => 'mes', 'Manes.05G085801' => 'mes', 'Manes.05G086200' => 'mes', 'Manes.15G036700' => 'mes', 'Manes.15G036900' => 'mes', 'Mapoly0004s0172' => 'mpo', 'Mapoly0023s0001' => 'mpo', 'Mapoly0142s0012' => 'mpo', 'MBI01_g32854_MAGBIO' => 'mbi', 'MBI11_g24427_MAGBIO' => 'mbi', 'MBI11_g47319_MAGBIO' => 'mbi', 'MCO01G433' => 'mco', 'MD00G1187800' => 'mdo', 'MD04G1226500' => 'mdo', 'MD05G1203900' => 'mdo', 'MD10G1191100' => 'mdo', 'MD12G1243500' => 'mdo', 'MD13G1207000' => 'mdo', 'MD13G1207100' => 'mdo', 'MD16G1208600' => 'mdo', 'Medtr1g050352' => 'mtr', 'Medtr1g070385' => 'mtr', 'Medtr1g070450' => 'mtr', 'Medtr1g075200' => 'mtr', 'Medtr1g075250' => 'mtr', 'Medtr1g075260' => 'mtr', 'Medtr1g475250' => 'mtr', 'Medtr4g075450' => 'mtr', 'Medtr7g096300' => 'mtr', 'Medtr8g105110' => 'mtr', 'MELO3C006470.2' => 'cme', 'MELO3C006471.2' => 'cme', 'MELO3C020772.2' => 'cme', 'MELO3C026780.2' => 'cme', 'MELO3C026781.2' => 'cme', 'Migut.D00390' => 'egut', 'Migut.G00435' => 'egut', 'Migut.G00436' => 'egut', 'Migut.G00718' => 'egut', 'MSTRG.21891' => 'ama', 'MSTRG.26910' => 'ama', 'MSTRG.4099' => 'ama', 'MSTRG.9925' => 'ama', 'Nitab4.5_0000165g0010' => 'nta', 'Nitab4.5_0000209g0180' => 'nta', 'Nitab4.5_0000244g0440' => 'nta', 'Nitab4.5_0000525g0220' => 'nta', 'Nitab4.5_0001597g0020' => 'nta', 'Nitab4.5_0001878g0040' => 'nta', 'Nitab4.5_0001878g0060' => 'nta', 'Nitab4.5_0002838g0100' => 'nta', 'Nitab4.5_0002838g0120' => 'nta', 'Nitab4.5_0004798g0030' => 'nta', 'Nitab4.5_0005420g0010' => 'nta', 'Nitab4.5_0005507g0010' => 'nta', 'Nitab4.5_0005574g0020' => 'nta', 'Nitab4.5_0005838g0010' => 'nta', 'Nitab4.5_0010580g0020' => 'nta', 'Nn1g02599' => 'nnu', 'Nn1g02608' => 'nnu', 'Nn3g17742' => 'nnu', 'Nn3g19534' => 'nnu', 'Nn3g19535' => 'nnu', 'Oeu008790.1' => 'oeu', 'Oeu008792.1' => 'oeu', 'Oeu032590.1' => 'oeu', 'Oeu035349.1' => 'oeu', 'Oeu049791.1' => 'oeu', 'Os01g0774500' => 'osa', 'Os03g0628800' => 'osa', 'Os03g0798600' => 'osa', 'Os05g0508800' => 'osa', 'Peaxi162Scf00036g02018' => 'pax', 'Peaxi162Scf00578g00032' => 'pax', 'Peaxi162Scf00578g00317' => 'pax', 'Peaxi162Scf00785g00114' => 'pax', 'Peaxi162Scf00813g00119' => 'pax', 'Peaxi162Scf00906g00227' => 'pax', 'PGR004G0875' => 'pgr', 'PGR004G2424' => 'pgr', 'PGR031G1239' => 'pgr', 'PGR031G2474' => 'pgr', 'PGR044G0423' => 'pgr', 'PGSC0003DMG400001128' => 'stu', 'PGSC0003DMG400007336' => 'stu', 'PGSC0003DMG400016318' => 'stu', 'PGSC0003DMG400016319' => 'stu', 'PGSC0003DMG400018074' => 'stu', 'Phvul.001G157700' => 'pvu', 'Phvul.002G148550' => 'pvu', 'Phvul.002G320200' => 'pvu', 'Phvul.003G089200' => 'pvu', 'Phvul.007G126000' => 'pvu', 'Phvul.007G126100' => 'pvu', 'Phvul.007G178000' => 'pvu', 'Phvul.007G178200' => 'pvu', 'Potri.002G043000' => 'ptr', 'Potri.002G043200' => 'ptr', 'Potri.003G123750' => 'ptr', 'Potri.005G055401' => 'ptr', 'Potri.005G219700' => 'ptr', 'Potri.005G220000' => 'ptr', 'Potri.008G161901' => 'ptr', 'Potri.008G162000' => 'ptr', 'Potri.008G162400' => 'ptr', 'Potri.010G076900' => 'ptr', 'Pp3c12_9180' => 'ppa', 'Pp3c13_19770' => 'ppa', 'Pp3c14_22950' => 'ppa', 'Pp3c16_12160' => 'ppa', 'Pp3c27_7820' => 'ppa', 'Pp3c2_3490' => 'ppa', 'Pp3c3_23700' => 'ppa', 'Pp3c3_36520' => 'ppa', 'Pp3c4_15250' => 'ppa', 'PRCOL_00007002' => 'pco', 'Prupe.1G030600' => 'ppe', 'Prupe.1G030700' => 'ppe', 'Prupe.6G345200' => 'ppe', 'Prupe.8G230300' => 'ppe', 'Prupe.8G230500' => 'ppe', 'Psat3g059600' => 'psa', 'Psat5g200920' => 'psa', 'Psat6g056440' => 'psa', 'Psat6g057360' => 'psa', 'Psat6g134120' => 'psa', 'Psat6g134160' => 'psa', 'Psat7g008640' => 'psa', 'Psat7g185240' => 'psa', 'PSO017G1330' => 'pso', 'PSO063G6097' => 'pso', 'PSO170G0835' => 'pso', 'PSO170G2499' => 'pso', 'PSO210G5058' => 'pso', 'PSO210G6154' => 'pso', 'PSO585G0031' => 'pso', 'PSO832G0264' => 'pso', 'PSO832G4288' => 'pso', 'QL03p027355' => 'qlo', 'QL03p027430' => 'qlo', 'QL04p081380' => 'qlo', 'QL06p015642' => 'qlo', 'QL06p015650' => 'qlo', 'QL06p015686' => 'qlo', 'QL12p042927' => 'qlo', 'QL93p1863_0035' => 'qlo', 'RcHm_v2.0_Chr3g0450581' => 'rch', 'RcHm_v2.0_Chr4g0390371' => 'rch', 'RcHm_v2.0_Chr4g0390381' => 'rch', 'RcHm_v2.0_Chr4g0390491' => 'rch', 'RcHm_v2.0_Chr4g0390501' => 'rch', 'RcHm_v2.0_Chr6g0289231' => 'rch', 'Rhsim04G0190400' => 'rsi', 'Rhsim04G0190500' => 'rsi', 'Rhsim04G0190600' => 'rsi', 'Rhsim13G0031400' => 'rsi', 'Rhsim13G0165600' => 'rsi', 'RhsimUnG0114600' => 'rsi', 'RhsimUnG0114700' => 'rsi', 'Sabra02G0034800' => 'sbr', 'Sabra02G0035100' => 'sbr', 'Sabra05G0168600' => 'sbr', 'Sabra05G0168800' => 'sbr', 'Sabra08G0123700' => 'sbr', 'Sabra10G0031900' => 'sbr', 'Sabra13G0039000' => 'sbr', 'SalBow2G0782' => 'sbo', 'SalBow2G1403' => 'sbo', 'SalBow4G0074' => 'sbo', 'SalBow4G2635' => 'sbo', 'SalBow5G3010' => 'sbo', 'Sc05g0000870' => 'sci', 'Sc05g0000890' => 'sci', 'Sc13g0005000' => 'sci', 'Sc13g0005030' => 'sci', 'Sc19g0003790' => 'sci', 'Sc19g0003800' => 'sci', 'Sed0003467' => 'sed', 'Sed0009355' => 'sed', 'Sed0009894' => 'sed', 'Sed0011972' => 'sed', 'Sed0021483' => 'sed', 'Sed0021750' => 'sed', 'Sed0026279' => 'sed', 'SEGI_05312' => 'sgi', 'SEGI_10112' => 'sgi', 'SEGI_15835' => 'sgi', 'SEGI_30386' => 'sgi', 'SEGI_34122' => 'sgi', 'SEGI_35063' => 'sgi', 'SGA_v2.0_scaffold101G29794' => 'sas', 'SGA_v2.0_scaffold1G00573' => 'sas', 'SGA_v2.0_scaffold79G25637' => 'sas', 'SGA_v2.0_scaffold88G27283' => 'sas', 'SGA_v2.0_scaffold88G27285' => 'sas', 'SGA_v2.0_scaffold88G27331' => 'sas', 'SHI09937' => 'shi', 'SMO119G0302' => 'smo', 'SMO137G0231' => 'smo', 'SMO367G1151' => 'smo', 'Solyc02g082000.3' => 'sly', 'Solyc06g031670.3' => 'sly', 'Solyc06g053810.3' => 'sly', 'Solyc07g025457.1' => 'sly', 'Solyc08g059740.1' => 'sly', 'Solyc08g059750.3' => 'sly', 'Solyc09g083370.3' => 'sly', 'Solyc12g038950.3' => 'sly', 'Sopen02g026630' => 'spe', 'Sopen06g018930' => 'spe', 'Sopen06g018940' => 'spe', 'Sopen08g009460' => 'spe', 'Sopen09g032290' => 'spe', 'Sp1g03080' => 'spa', 'Sp1g03090' => 'spa', 'Sp1g05480' => 'spa', 'Sp2g07860' => 'spa', 'Sp2g08430' => 'spa', 'Sp2g08440' => 'spa', 'Sp2g26200' => 'spa', 'Sp4g13170' => 'spa', 'Sp6g33840' => 'spa', 'SpUn1204_0010' => 'spa', 'TAR365G0908' => 'tar', 'TAR381G1270' => 'tar', 'TAR381G1651' => 'tar', 'TAR625G1131' => 'tar', 'TAR633G0962' => 'tar', 'TAR633G1729' => 'tar', 'TAR633G1864' => 'tar', 'TAR636G0221' => 'tar', 'TAR636G0314' => 'tar', 'TAR636G3202' => 'tar', 'THA.LOC104800805' => 'tha', 'THA.LOC104801096' => 'tha', 'THA.LOC104801555' => 'tha', 'THA.LOC104808491' => 'tha', 'THA.LOC104808595' => 'tha', 'THA.LOC104815985' => 'tha', 'THA.LOC104822250' => 'tha', 'THA.LOC104826071' => 'tha', 'Thecc.01G265200' => 'tca', 'Thecc.01G265300' => 'tca', 'Thecc.01G265700' => 'tca', 'Thecc.03G109100' => 'tca', 'Thecc.04G245900' => 'tca', 'Thecc.04G246000' => 'tca', 'Thhalv10003334m.g' => 'esa', 'Thhalv10005508m.g' => 'esa', 'Thhalv10005643m.g' => 'esa', 'Thhalv10007316m.g' => 'esa', 'Thhalv10009006m.g' => 'esa', 'Thhalv10009309m.g' => 'esa', 'Thhalv10014917m.g' => 'esa', 'Thhalv10014919m.g' => 'esa', 'Thhalv10015393m.g' => 'esa', 'Thhalv10016515m.g' => 'esa', 'Thhalv10029242m.g' => 'esa', 'TPR.G16654' => 'tpr', 'TPR.G20589' => 'tpr', 'TPR.G23029' => 'tpr', 'TPR.G27731' => 'tpr', 'TPR.G28889' => 'tpr', 'TPR.G28899' => 'tpr', 'TPR.G30846' => 'tpr', 'TPR.G5452' => 'tpr', 'TPR.G5713' => 'tpr', 'TPR.G9046' => 'tpr', 'TPR.G9061' => 'tpr', 'TWI09G1075' => 'twi', 'TWI12G0806' => 'twi', 'TWI18G0108' => 'twi', 'TWI53G1361' => 'twi', 'TWI73G0185' => 'twi', 'TWI73G0427' => 'twi', 'unitig_37.g12001' => 'ugi', 'unitig_747.g21660' => 'ugi', 'unitig_748.g7232' => 'ugi', 'unitig_748.g7315' => 'ugi', 'unitig_85.g27262' => 'ugi', 'unitig_92.g28220' => 'ugi', 'vmacro02632' => 'vma', 'vmacro08410' => 'vma', 'vmacro08411' => 'vma', 'vmacro15407' => 'vma', 'VMungo0251G3619' => 'vmu', 'VMungo0720G1204' => 'vmu', 'VMungo0720G1918' => 'vmu', 'VMungo0720G2387' => 'vmu', 'VMungo0720G2961' => 'vmu', 'VMungo1215G2154' => 'vmu', 'VMungo1383G2411' => 'vmu', 'Zm00001eb051130' => 'zma', 'Zm00001eb116830' => 'zma', 'Zm00001eb116850' => 'zma', 'Zm00001eb151740' => 'zma', 'Zm00001eb292360' => 'zma', 'Zm00001eb301640' => 'zma' ), 'gf_id' => 'HOM05D000856', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000856' ), 'data_identifier' => 'HOM05D000856', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000856', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p00010' => 'bna', 'A03p04160' => 'bna', 'A03p17160' => 'bna', 'A04p23370' => 'bna', 'A05p14860' => 'bna', 'A08p37020' => 'bna', 'A09p08050' => 'bna', 'A09p66800' => 'bna', 'A09p67940' => 'bna', 'A10p02680' => 'bna', 'A10p05320' => 'bna', 'Aa31LG1G20560' => 'aar', 'Aa31LG1G20610' => 'aar', 'Aa31LG1G7810' => 'aar', 'Aa31LG5G3590' => 'aar', 'Aa31LG5G6140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3819' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4683' => 'aag', 'Actinidia04480' => 'ach', 'Actinidia05466' => 'ach', 'Actinidia08445' => 'ach', 'Actinidia21170' => 'ach', 'Actinidia24812' => 'ach', 'Actinidia24951' => 'ach', 'Actinidia40088' => 'ach', 'Ah.02g111660' => 'amhyb', 'Ah.11g048900' => 'amhyb', 'Ah.11g049910' => 'amhyb', 'AL1G13870' => 'aly', 'AL1G13880' => 'aly', 'AL1G16760' => 'aly', 'AL390U10020' => 'aly', 'AL4G25520' => 'aly', 'AL6G19890' => 'aly', 'AL6G19900' => 'aly', 'AL6G19910' => 'aly', 'AL8G40100' => 'aly', 'Aqoxy2G03562' => 'aox', 'Aqoxy5G00316' => 'aox', 'Aqoxy5G00926' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1628KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1H403S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2FU6SJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.882I6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8YRY2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YN1SN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AF70II' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZA8L1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F916KL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHRD8H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KTZ8QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S22EMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8M29T' => 'arhy', 'AT1G04270' => 'ath', 'AT1G04280' => 'ath', 'AT1G06750' => 'ath', 'AT1G33850' => 'ath', 'AT2G30630' => 'ath', 'AT5G09490' => 'ath', 'AT5G09500' => 'ath', 'AT5G09510' => 'ath', 'AT5G43640' => 'ath', 'AT5G63070' => 'ath', 'ATR0605G315' => 'atr', 'Atru.chr11.175' => 'acertr', 'Atru.chr11.653' => 'acertr', 'Atru.chr3.1616' => 'acertr', 'Atru.chr4.2230' => 'acertr', 'Atru.chr4.2232' => 'acertr', 'Atru.chr5.1598' => 'acertr', 'Atru.chr5.1600' => 'acertr', 'Atru.chr5.2188' => 'acertr', 'AUR62008326' => 'cqu', 'AUR62011922' => 'cqu', 'AUR62011924' => 'cqu', 'AUR62021771' => 'cqu', 'AUR62032237' => 'cqu', 'AUR62032240' => 'cqu', 'BcaB01g05572' => 'bca', 'BcaB02g10337' => 'bca', 'BcaB04g19944' => 'bca', 'BcaB05g21548' => 'bca', 'BcaB05g21549' => 'bca', 'BcaB05g23227' => 'bca', 'BcaB06g26256' => 'bca', 'BcaB06g26257' => 'bca', 'BcaB06g28379' => 'bca', 'BcaC02g11159' => 'bca', 'BcaC03g13258' => 'bca', 'BcaC03g13259' => 'bca', 'BcaC05g24456' => 'bca', 'BcaC05g24457' => 'bca', 'BcaC07g36922' => 'bca', 'BcaC07g36923' => 'bca', 'BcaC07g42050' => 'bca', 'BcaC07g42176' => 'bca', 'BcaC07g42195' => 'bca', 'BcaC07g42196' => 'bca', 'BcaNung06674' => 'bca', 'BolC2t06351H' => 'bol', 'BolC2t06352H' => 'bol', 'BolC3t12993H' => 'bol', 'BolC4t23525H' => 'bol', 'BolC4t27475H' => 'bol', 'BolC5t29025H' => 'bol', 'BolC5t29026H' => 'bol', 'BolC8t46898H' => 'bol', 'BolC8t46899H' => 'bol', 'BolC8t52630H' => 'bol', 'BolC8t52765H' => 'bol', 'BolC9t53824H' => 'bol', 'BraA03t09760Z' => 'bra', 'BraA03t10990Z' => 'bra', 'BraA05t20413Z' => 'bra', 'BraA08t35602Z' => 'bra', 'BraA09t36458Z' => 'bra', 'BraA09t42018Z' => 'bra', 'BraA09t42129Z' => 'bra', 'BraA10t42536Z' => 'bra', 'BraA10t42537Z' => 'bra', 'C01p10690' => 'bna', 'C02p03890' => 'bna', 'C02p03900' => 'bna', 'C03p04620' => 'bna', 'C04p19870' => 'bna', 'C04p59670' => 'bna', 'C05p02460' => 'bna', 'C05p02470' => 'bna', 'C08p00980' => 'bna', 'C08p00990' => 'bna', 'C08p51030' => 'bna', 'C08p52360' => 'bna', 'C09p09120' => 'bna', 'CAN.G19.15' => 'can', 'CAN.G251.10' => 'can', 'CAN.G251.9' => 'can', 'CAN.G398.24' => 'can', 'CAN.G410.32' => 'can', 'CAN.G881.2' => 'can', 'CANSAT01G3025' => 'cansat', 'CANSAT78G1211' => 'cansat', 'CANSAT78G1218' => 'cansat', 'CANSAT78G1521' => 'cansat', 'CANSAT78G1670' => 'cansat', 'CARHR003600' => 'chi', 'CARHR003610' => 'chi', 'CARHR006290' => 'chi', 'CARHR006430' => 'chi', 'CARHR124110' => 'chi', 'CARHR203870' => 'chi', 'CARHR203880' => 'chi', 'CARHR203890' => 'chi', 'CARHR276880' => 'chi', 'Carub.0001s0346' => 'cru', 'Carub.0001s0347' => 'cru', 'Carub.0001s0607' => 'cru', 'Carub.0003s2768' => 'cru', 'Carub.0003s2769' => 'cru', 'Carub.0004s1178' => 'cru', 'Carub.0006s0806' => 'cru', 'Carub.0006s0807' => 'cru', 'Carub.0006s0808' => 'cru', 'Carub.0008s0501' => 'cru', 'Carub.0008s2379' => 'cru', 'Ca_08655_v3' => 'car', 'Ca_08922_v3' => 'car', 'Ca_08923_v3' => 'car', 'Ca_09119_v3' => 'car', 'Ca_09703_v3' => 'car', 'Ca_09705_v3' => 'car', 'Ca_09835_v3' => 'car', 'Ca_26403_v3' => 'car', 'Ca_30719_v3' => 'car', 'CBR_g17958' => 'cbr', 'CBR_g40516' => 'cbr', 'Cc00_g05350' => 'ccan', 'Cc01_g18690' => 'ccan', 'Cc03_g04830' => 'ccan', 'Cc03_g04850' => 'ccan', 'CDE02G4469' => 'cde', 'CDE06G0883' => 'cde', 'CDE06G1295' => 'cde', 'CDE06G1390' => 'cde', 'CDE07G0584' => 'cde', 'CDE07G1084' => 'cde', 'CDE08G1259' => 'cde', 'Cfa002341' => 'cfa', 'Cfa024337' => 'cfa', 'Ciclev10004749m.g' => 'ccl', 'Ciclev10006127m.g' => 'ccl', 'Ciclev10019720m.g' => 'ccl', 'Ciclev10022652m.g' => 'ccl', 'CiPaw.01G190400' => 'cil', 'CiPaw.01G190500' => 'cil', 'CiPaw.02G116400' => 'cil', 'CiPaw.02G116500' => 'cil', 'CiPaw.04G183000' => 'cil', 'CiPaw.04G183300' => 'cil', 'ClCG05G004610' => 'cla', 'ClCG05G004620' => 'cla', 'ClCG06G006730' => 'cla', 'ClCG06G006740' => 'cla', 'ClCG11G003690' => 'cla', 'COL.COLO4_08276' => 'col', 'COL.COLO4_08277' => 'col', 'COL.COLO4_15787' => 'col', 'COL.COLO4_15789' => 'col', 'Cpa.g.c44815' => 'cpa', 'Cpa.g.sc52.144' => 'cpa', 'Cpa.g.sc58.46' => 'cpa', 'Cpa.g.sc58.47' => 'cpa', 'Cre08.g360900' => 'cre', 'CsaV3_2G013030' => 'csa', 'CsaV3_2G013050' => 'csa', 'CsaV3_2G015620' => 'csa', 'CsaV3_3G012590' => 'csa', 'CsaV3_3G012600' => 'csa', 'CSS0001641' => 'camsi', 'CSS0008310' => 'camsi', 'CSS0013011' => 'camsi', 'CSS0017147' => 'camsi', 'CSS0022970' => 'camsi', 'CSS0025655' => 'camsi', 'CSS0028665' => 'camsi', 'CSS0029117' => 'camsi', 'CSS0032024' => 'camsi', 'CSS0039681' => 'camsi', 'CSS0046516' => 'camsi', 'CSS0050307' => 'camsi', 'DCAR_005871' => 'dca', 'DCAR_007342' => 'dca', 'DCAR_024228' => 'dca', 'DCAR_027277' => 'dca', 'DCAR_030718' => 'dca', 'Dinv20287' => 'din', 'Dinv22461' => 'din', 'Dinv22464' => 'din', 'Dinv29912' => 'din', 'Dinv29913' => 'din', 'Dinv34580' => 'din', 'Dinv34582' => 'din', 'Dinv44632' => 'din', 'Duzib052G0266' => 'dzi', 'Duzib133G0907' => 'dzi', 'Duzib133G1034' => 'dzi', 'Duzib138G0207' => 'dzi', 'Duzib138G0491' => 'dzi', 'Duzib151G0812' => 'dzi', 'Duzib151G1166' => 'dzi', 'Duzib168G0192' => 'dzi', 'Duzib211G0077' => 'dzi', 'Duzib212G0429' => 'dzi', 'Duzib212G0472' => 'dzi', 'ECA233G2617' => 'eca', 'ECA236G4188' => 'eca', 'ECA240G0936' => 'eca', 'ECA240G1129' => 'eca', 'ECA247G0623' => 'eca', 'EL10Ac5g10451' => 'bvu', 'EL10Ac5g10453' => 'bvu', 'EL10Ac5g10894' => 'bvu', 'Eucgr.H00192' => 'egr', 'Eucgr.H00193' => 'egr', 'Eucgr.H00194' => 'egr', 'Eucgr.J01562' => 'egr', 'Eucgr.K03301' => 'egr', 'FAN02G0632' => 'fan', 'FAN05G5378' => 'fan', 'FAN09G3247' => 'fan', 'FAN12G0435' => 'fan', 'FAN12G2426' => 'fan', 'FAN14G1707' => 'fan', 'FAN14G4725' => 'fan', 'FAN15G2071' => 'fan', 'FAN17G3065' => 'fan', 'FAN19G1376' => 'fan', 'FAN20G0354' => 'fan', 'FAN20G2429' => 'fan', 'FAN20G2658' => 'fan', 'FAN24G2343' => 'fan', 'FAN27G2362' => 'fan', 'FAN28G1765' => 'fan', 'FvH4_1g16020' => 'fve', 'FvH4_2g04890' => 'fve', 'FvH4_2g22270' => 'fve', 'FvH4_4g02630' => 'fve', 'FvH4_4g02640' => 'fve', 'FvH4_6g02650' => 'fve', 'Glyma.02G140600' => 'gma', 'Glyma.03G159900' => 'gma', 'Glyma.05G234800' => 'gma', 'Glyma.07G269600' => 'gma', 'Glyma.08G042300' => 'gma', 'Glyma.10G033500' => 'gma', 'Glyma.10G185200' => 'gma', 'Glyma.17G004300' => 'gma', 'Glyma.19G161900' => 'gma', 'Glyma.20G205100' => 'gma', 'Glyma.20G205200' => 'gma', 'Gohir.A01G139101' => 'ghi', 'Gohir.A02G035600' => 'ghi', 'Gohir.A02G117901' => 'ghi', 'Gohir.A07G210100' => 'ghi', 'Gohir.A07G210200' => 'ghi', 'Gohir.A08G061100' => 'ghi', 'Gohir.A09G223000' => 'ghi', 'Gohir.A09G223100' => 'ghi', 'Gohir.A10G113900' => 'ghi', 'Gohir.A10G114000' => 'ghi', 'Gohir.D02G042300' => 'ghi', 'Gohir.D07G216100' => 'ghi', 'Gohir.D07G216200' => 'ghi', 'Gohir.D08G070400' => 'ghi', 'Gohir.D09G225000' => 'ghi', 'Gohir.D09G225100' => 'ghi', 'Gohir.D10G152300' => 'ghi', 'Gohir.D10G153200' => 'ghi', 'Gohir.D11G133701' => 'ghi', 'Gorai.004G074100' => 'gra', 'Gorai.005G046800' => 'gra', 'Gorai.006G246500' => 'gra', 'Gorai.006G246600' => 'gra', 'Gorai.007G142900' => 'gra', 'Gorai.011G171000' => 'gra', 'Gorai.011G171100' => 'gra', 'Gorai.013G104300' => 'gra', 'Gorai.013G104400' => 'gra', 'GSVIVG01000754001' => 'vvi', 'GSVIVG01000756001' => 'vvi', 'GSVIVG01010903001' => 'vvi', 'GSVIVG01017623001' => 'vvi', 'GSVIVG01018113001' => 'vvi', 'GSVIVG01018116001' => 'vvi', 'GSVIVG01018118001' => 'vvi', 'HanXRQChr03g0076211' => 'han', 'HanXRQChr03g0092431' => 'han', 'HanXRQChr03g0092441' => 'han', 'HanXRQChr03g0092591' => 'han', 'HanXRQChr03g0092671' => 'han', 'HanXRQChr03g0092681' => 'han', 'HanXRQChr03g0092691' => 'han', 'HanXRQChr03g0092701' => 'han', 'HanXRQChr03g0092721' => 'han', 'HanXRQChr03g0092731' => 'han', 'HanXRQChr04g0113681' => 'han', 'HanXRQChr10g0281371' => 'han', 'HanXRQChr11g0337141' => 'han', 'HanXRQChr13g0424521' => 'han', 'HanXRQChr13g0424531' => 'han', 'HanXRQChr13g0424541' => 'han', 'HanXRQChr16g0498221' => 'han', 'Haze_04377' => 'cav', 'Haze_11298' => 'cav', 'Haze_24547' => 'cav', 'Haze_24550' => 'cav', 'Haze_26587' => 'cav', 'Hma1.2p1_0650F.1_g195410' => 'hma', 'Hma1.2p1_0893F.1_g233470' => 'hma', 'HPP92_006508' => 'vpl', 'HPP92_024780' => 'vpl', 'Hund02688' => 'sun', 'Hund09380' => 'sun', 'Hund09381' => 'sun', 'Hund09832' => 'sun', 'Hund09833' => 'sun', 'Hund11351' => 'sun', 'Hund11513' => 'sun', 'Lalb_Chr06g0162591' => 'lal', 'Lalb_Chr06g0162601' => 'lal', 'Lalb_Chr06g0169321' => 'lal', 'Lalb_Chr09g0330951' => 'lal', 'Lalb_Chr16g0387631' => 'lal', 'Lalb_Chr21g0306241' => 'lal', 'Lalb_Chr25g0290051' => 'lal', 'Lalb_Chr25g0290061' => 'lal', 'Lalb_Chr25g0290071' => 'lal', 'Lj1g0003876' => 'lja', 'Lj1P1207T36' => 'lonja', 'Lj2C1156G12' => 'lonja', 'Lj3A793G39' => 'lonja', 'Lj3C580G2' => 'lonja', 'Lj3C780G2' => 'lonja', 'Lj3C780T4' => 'lonja', 'Lj3C793G9' => 'lonja', 'Lj4g0012960' => 'lja', 'Lj5g0021252' => 'lja', 'Lj5g0021484' => 'lja', 'Lj5g0024528' => 'lja', 'Lj6A399T12' => 'lonja', 'Lj6A656G65' => 'lonja', 'Lsat_1_v5_gn_3_125500' => 'lsa', 'Lsat_1_v5_gn_3_125540' => 'lsa', 'Lsat_1_v5_gn_5_72701' => 'lsa', 'Lsat_1_v5_gn_8_91560' => 'lsa', 'Lsat_1_v5_gn_9_9640' => 'lsa', 'Manes.01G200600' => 'mes', 'Manes.01G200700' => 'mes', 'Manes.03G168900' => 'mes', 'Manes.03G169000' => 'mes', 'Manes.05G085801' => 'mes', 'Manes.05G086200' => 'mes', 'Manes.15G036700' => 'mes', 'Manes.15G036900' => 'mes', 'Mapoly0004s0172' => 'mpo', 'Mapoly0023s0001' => 'mpo', 'Mapoly0142s0012' => 'mpo', 'MBI01_g32854_MAGBIO' => 'mbi', 'MBI11_g24427_MAGBIO' => 'mbi', 'MBI11_g47319_MAGBIO' => 'mbi', 'MCO01G433' => 'mco', 'MD00G1187800' => 'mdo', 'MD04G1226500' => 'mdo', 'MD05G1203900' => 'mdo', 'MD10G1191100' => 'mdo', 'MD12G1243500' => 'mdo', 'MD13G1207000' => 'mdo', 'MD13G1207100' => 'mdo', 'MD16G1208600' => 'mdo', 'Medtr1g050352' => 'mtr', 'Medtr1g070385' => 'mtr', 'Medtr1g070450' => 'mtr', 'Medtr1g075200' => 'mtr', 'Medtr1g075250' => 'mtr', 'Medtr1g075260' => 'mtr', 'Medtr1g475250' => 'mtr', 'Medtr4g075450' => 'mtr', 'Medtr7g096300' => 'mtr', 'Medtr8g105110' => 'mtr', 'MELO3C006470.2' => 'cme', 'MELO3C006471.2' => 'cme', 'MELO3C020772.2' => 'cme', 'MELO3C026780.2' => 'cme', 'MELO3C026781.2' => 'cme', 'Migut.D00390' => 'egut', 'Migut.G00435' => 'egut', 'Migut.G00436' => 'egut', 'Migut.G00718' => 'egut', 'MSTRG.21891' => 'ama', 'MSTRG.26910' => 'ama', 'MSTRG.4099' => 'ama', 'MSTRG.9925' => 'ama', 'Nitab4.5_0000165g0010' => 'nta', 'Nitab4.5_0000209g0180' => 'nta', 'Nitab4.5_0000244g0440' => 'nta', 'Nitab4.5_0000525g0220' => 'nta', 'Nitab4.5_0001597g0020' => 'nta', 'Nitab4.5_0001878g0040' => 'nta', 'Nitab4.5_0001878g0060' => 'nta', 'Nitab4.5_0002838g0100' => 'nta', 'Nitab4.5_0002838g0120' => 'nta', 'Nitab4.5_0004798g0030' => 'nta', 'Nitab4.5_0005420g0010' => 'nta', 'Nitab4.5_0005507g0010' => 'nta', 'Nitab4.5_0005574g0020' => 'nta', 'Nitab4.5_0005838g0010' => 'nta', 'Nitab4.5_0010580g0020' => 'nta', 'Nn1g02599' => 'nnu', 'Nn1g02608' => 'nnu', 'Nn3g17742' => 'nnu', 'Nn3g19534' => 'nnu', 'Nn3g19535' => 'nnu', 'Oeu008790.1' => 'oeu', 'Oeu008792.1' => 'oeu', 'Oeu032590.1' => 'oeu', 'Oeu035349.1' => 'oeu', 'Oeu049791.1' => 'oeu', 'Os01g0774500' => 'osa', 'Os03g0628800' => 'osa', 'Os03g0798600' => 'osa', 'Os05g0508800' => 'osa', 'Peaxi162Scf00036g02018' => 'pax', 'Peaxi162Scf00578g00032' => 'pax', 'Peaxi162Scf00578g00317' => 'pax', 'Peaxi162Scf00785g00114' => 'pax', 'Peaxi162Scf00813g00119' => 'pax', 'Peaxi162Scf00906g00227' => 'pax', 'PGR004G0875' => 'pgr', 'PGR004G2424' => 'pgr', 'PGR031G1239' => 'pgr', 'PGR031G2474' => 'pgr', 'PGR044G0423' => 'pgr', 'PGSC0003DMG400001128' => 'stu', 'PGSC0003DMG400007336' => 'stu', 'PGSC0003DMG400016318' => 'stu', 'PGSC0003DMG400016319' => 'stu', 'PGSC0003DMG400018074' => 'stu', 'Phvul.001G157700' => 'pvu', 'Phvul.002G148550' => 'pvu', 'Phvul.002G320200' => 'pvu', 'Phvul.003G089200' => 'pvu', 'Phvul.007G126000' => 'pvu', 'Phvul.007G126100' => 'pvu', 'Phvul.007G178000' => 'pvu', 'Phvul.007G178200' => 'pvu', 'Potri.002G043000' => 'ptr', 'Potri.002G043200' => 'ptr', 'Potri.003G123750' => 'ptr', 'Potri.005G055401' => 'ptr', 'Potri.005G219700' => 'ptr', 'Potri.005G220000' => 'ptr', 'Potri.008G161901' => 'ptr', 'Potri.008G162000' => 'ptr', 'Potri.008G162400' => 'ptr', 'Potri.010G076900' => 'ptr', 'Pp3c12_9180' => 'ppa', 'Pp3c13_19770' => 'ppa', 'Pp3c14_22950' => 'ppa', 'Pp3c16_12160' => 'ppa', 'Pp3c27_7820' => 'ppa', 'Pp3c2_3490' => 'ppa', 'Pp3c3_23700' => 'ppa', 'Pp3c3_36520' => 'ppa', 'Pp3c4_15250' => 'ppa', 'PRCOL_00007002' => 'pco', 'Prupe.1G030600' => 'ppe', 'Prupe.1G030700' => 'ppe', 'Prupe.6G345200' => 'ppe', 'Prupe.8G230300' => 'ppe', 'Prupe.8G230500' => 'ppe', 'Psat3g059600' => 'psa', 'Psat5g200920' => 'psa', 'Psat6g056440' => 'psa', 'Psat6g057360' => 'psa', 'Psat6g134120' => 'psa', 'Psat6g134160' => 'psa', 'Psat7g008640' => 'psa', 'Psat7g185240' => 'psa', 'PSO017G1330' => 'pso', 'PSO063G6097' => 'pso', 'PSO170G0835' => 'pso', 'PSO170G2499' => 'pso', 'PSO210G5058' => 'pso', 'PSO210G6154' => 'pso', 'PSO585G0031' => 'pso', 'PSO832G0264' => 'pso', 'PSO832G4288' => 'pso', 'QL03p027355' => 'qlo', 'QL03p027430' => 'qlo', 'QL04p081380' => 'qlo', 'QL06p015642' => 'qlo', 'QL06p015650' => 'qlo', 'QL06p015686' => 'qlo', 'QL12p042927' => 'qlo', 'QL93p1863_0035' => 'qlo', 'RcHm_v2.0_Chr3g0450581' => 'rch', 'RcHm_v2.0_Chr4g0390371' => 'rch', 'RcHm_v2.0_Chr4g0390381' => 'rch', 'RcHm_v2.0_Chr4g0390491' => 'rch', 'RcHm_v2.0_Chr4g0390501' => 'rch', 'RcHm_v2.0_Chr6g0289231' => 'rch', 'Rhsim04G0190400' => 'rsi', 'Rhsim04G0190500' => 'rsi', 'Rhsim04G0190600' => 'rsi', 'Rhsim13G0031400' => 'rsi', 'Rhsim13G0165600' => 'rsi', 'RhsimUnG0114600' => 'rsi', 'RhsimUnG0114700' => 'rsi', 'Sabra02G0034800' => 'sbr', 'Sabra02G0035100' => 'sbr', 'Sabra05G0168600' => 'sbr', 'Sabra05G0168800' => 'sbr', 'Sabra08G0123700' => 'sbr', 'Sabra10G0031900' => 'sbr', 'Sabra13G0039000' => 'sbr', 'SalBow2G0782' => 'sbo', 'SalBow2G1403' => 'sbo', 'SalBow4G0074' => 'sbo', 'SalBow4G2635' => 'sbo', 'SalBow5G3010' => 'sbo', 'Sc05g0000870' => 'sci', 'Sc05g0000890' => 'sci', 'Sc13g0005000' => 'sci', 'Sc13g0005030' => 'sci', 'Sc19g0003790' => 'sci', 'Sc19g0003800' => 'sci', 'Sed0003467' => 'sed', 'Sed0009355' => 'sed', 'Sed0009894' => 'sed', 'Sed0011972' => 'sed', 'Sed0021483' => 'sed', 'Sed0021750' => 'sed', 'Sed0026279' => 'sed', 'SEGI_05312' => 'sgi', 'SEGI_10112' => 'sgi', 'SEGI_15835' => 'sgi', 'SEGI_30386' => 'sgi', 'SEGI_34122' => 'sgi', 'SEGI_35063' => 'sgi', 'SGA_v2.0_scaffold101G29794' => 'sas', 'SGA_v2.0_scaffold1G00573' => 'sas', 'SGA_v2.0_scaffold79G25637' => 'sas', 'SGA_v2.0_scaffold88G27283' => 'sas', 'SGA_v2.0_scaffold88G27285' => 'sas', 'SGA_v2.0_scaffold88G27331' => 'sas', 'SHI09937' => 'shi', 'SMO119G0302' => 'smo', 'SMO137G0231' => 'smo', 'SMO367G1151' => 'smo', 'Solyc02g082000.3' => 'sly', 'Solyc06g031670.3' => 'sly', 'Solyc06g053810.3' => 'sly', 'Solyc07g025457.1' => 'sly', 'Solyc08g059740.1' => 'sly', 'Solyc08g059750.3' => 'sly', 'Solyc09g083370.3' => 'sly', 'Solyc12g038950.3' => 'sly', 'Sopen02g026630' => 'spe', 'Sopen06g018930' => 'spe', 'Sopen06g018940' => 'spe', 'Sopen08g009460' => 'spe', 'Sopen09g032290' => 'spe', 'Sp1g03080' => 'spa', 'Sp1g03090' => 'spa', 'Sp1g05480' => 'spa', 'Sp2g07860' => 'spa', 'Sp2g08430' => 'spa', 'Sp2g08440' => 'spa', 'Sp2g26200' => 'spa', 'Sp4g13170' => 'spa', 'Sp6g33840' => 'spa', 'SpUn1204_0010' => 'spa', 'TAR365G0908' => 'tar', 'TAR381G1270' => 'tar', 'TAR381G1651' => 'tar', 'TAR625G1131' => 'tar', 'TAR633G0962' => 'tar', 'TAR633G1729' => 'tar', 'TAR633G1864' => 'tar', 'TAR636G0221' => 'tar', 'TAR636G0314' => 'tar', 'TAR636G3202' => 'tar', 'THA.LOC104800805' => 'tha', 'THA.LOC104801096' => 'tha', 'THA.LOC104801555' => 'tha', 'THA.LOC104808491' => 'tha', 'THA.LOC104808595' => 'tha', 'THA.LOC104815985' => 'tha', 'THA.LOC104822250' => 'tha', 'THA.LOC104826071' => 'tha', 'Thecc.01G265200' => 'tca', 'Thecc.01G265300' => 'tca', 'Thecc.01G265700' => 'tca', 'Thecc.03G109100' => 'tca', 'Thecc.04G245900' => 'tca', 'Thecc.04G246000' => 'tca', 'Thhalv10003334m.g' => 'esa', 'Thhalv10005508m.g' => 'esa', 'Thhalv10005643m.g' => 'esa', 'Thhalv10007316m.g' => 'esa', 'Thhalv10009006m.g' => 'esa', 'Thhalv10009309m.g' => 'esa', 'Thhalv10014917m.g' => 'esa', 'Thhalv10014919m.g' => 'esa', 'Thhalv10015393m.g' => 'esa', 'Thhalv10016515m.g' => 'esa', 'Thhalv10029242m.g' => 'esa', 'TPR.G16654' => 'tpr', 'TPR.G20589' => 'tpr', 'TPR.G23029' => 'tpr', 'TPR.G27731' => 'tpr', 'TPR.G28889' => 'tpr', 'TPR.G28899' => 'tpr', 'TPR.G30846' => 'tpr', 'TPR.G5452' => 'tpr', 'TPR.G5713' => 'tpr', 'TPR.G9046' => 'tpr', 'TPR.G9061' => 'tpr', 'TWI09G1075' => 'twi', 'TWI12G0806' => 'twi', 'TWI18G0108' => 'twi', 'TWI53G1361' => 'twi', 'TWI73G0185' => 'twi', 'TWI73G0427' => 'twi', 'unitig_37.g12001' => 'ugi', 'unitig_747.g21660' => 'ugi', 'unitig_748.g7232' => 'ugi', 'unitig_748.g7315' => 'ugi', 'unitig_85.g27262' => 'ugi', 'unitig_92.g28220' => 'ugi', 'vmacro02632' => 'vma', 'vmacro08410' => 'vma', 'vmacro08411' => 'vma', 'vmacro15407' => 'vma', 'VMungo0251G3619' => 'vmu', 'VMungo0720G1204' => 'vmu', 'VMungo0720G1918' => 'vmu', 'VMungo0720G2387' => 'vmu', 'VMungo0720G2961' => 'vmu', 'VMungo1215G2154' => 'vmu', 'VMungo1383G2411' => 'vmu', 'Zm00001eb051130' => 'zma', 'Zm00001eb116830' => 'zma', 'Zm00001eb116850' => 'zma', 'Zm00001eb151740' => 'zma', 'Zm00001eb292360' => 'zma', 'Zm00001eb301640' => 'zma' ) $gf_id = 'HOM05D000856' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000856' ) $data_identifier = 'HOM05D000856' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 13, 'ath' => (int) 10, 'atr' => (int) 1, 'acertr' => (int) 8, 'cqu' => (int) 6, 'bca' => (int) 21, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 11, 'car' => (int) 9, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 8, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 5, 'fan' => (int) 16, 'fve' => (int) 6, 'gma' => (int) 11, 'ghi' => (int) 19, 'gra' => (int) 9, 'vvi' => (int) 7, 'han' => (int) 17, 'cav' => (int) 5, 'hma' => (int) 2, 'vpl' => (int) 2, 'sun' => (int) 7, 'lal' => (int) 9, 'lja' => (int) 5, 'lonja' => (int) 9, 'lsa' => (int) 5, 'mes' => (int) 8, 'mpo' => (int) 3, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 10, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 15, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 9, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 9, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 6, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 5, 'spa' => (int) 10, 'tar' => (int) 10, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 11, 'tpr' => (int) 11, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 4, 'vmu' => (int) 7, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb301640' $species_info = array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ) $local_species = 'ach' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000856', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p00010' => 'bna', 'A03p04160' => 'bna', 'A03p17160' => 'bna', 'A04p23370' => 'bna', 'A05p14860' => 'bna', 'A08p37020' => 'bna', 'A09p08050' => 'bna', 'A09p66800' => 'bna', 'A09p67940' => 'bna', 'A10p02680' => 'bna', 'A10p05320' => 'bna', 'Aa31LG1G20560' => 'aar', 'Aa31LG1G20610' => 'aar', 'Aa31LG1G7810' => 'aar', 'Aa31LG5G3590' => 'aar', 'Aa31LG5G6140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3819' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4683' => 'aag', 'Actinidia04480' => 'ach', 'Actinidia05466' => 'ach', 'Actinidia08445' => 'ach', 'Actinidia21170' => 'ach', 'Actinidia24812' => 'ach', 'Actinidia24951' => 'ach', 'Actinidia40088' => 'ach', 'Ah.02g111660' => 'amhyb', 'Ah.11g048900' => 'amhyb', 'Ah.11g049910' => 'amhyb', 'AL1G13870' => 'aly', 'AL1G13880' => 'aly', 'AL1G16760' => 'aly', 'AL390U10020' => 'aly', 'AL4G25520' => 'aly', 'AL6G19890' => 'aly', 'AL6G19900' => 'aly', 'AL6G19910' => 'aly', 'AL8G40100' => 'aly', 'Aqoxy2G03562' => 'aox', 'Aqoxy5G00316' => 'aox', 'Aqoxy5G00926' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1628KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1H403S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2FU6SJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.882I6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8YRY2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YN1SN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AF70II' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZA8L1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F916KL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHRD8H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KTZ8QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S22EMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8M29T' => 'arhy', 'AT1G04270' => 'ath', 'AT1G04280' => 'ath', 'AT1G06750' => 'ath', 'AT1G33850' => 'ath', 'AT2G30630' => 'ath', 'AT5G09490' => 'ath', 'AT5G09500' => 'ath', 'AT5G09510' => 'ath', 'AT5G43640' => 'ath', 'AT5G63070' => 'ath', 'ATR0605G315' => 'atr', 'Atru.chr11.175' => 'acertr', 'Atru.chr11.653' => 'acertr', 'Atru.chr3.1616' => 'acertr', 'Atru.chr4.2230' => 'acertr', 'Atru.chr4.2232' => 'acertr', 'Atru.chr5.1598' => 'acertr', 'Atru.chr5.1600' => 'acertr', 'Atru.chr5.2188' => 'acertr', 'AUR62008326' => 'cqu', 'AUR62011922' => 'cqu', 'AUR62011924' => 'cqu', 'AUR62021771' => 'cqu', 'AUR62032237' => 'cqu', 'AUR62032240' => 'cqu', 'BcaB01g05572' => 'bca', 'BcaB02g10337' => 'bca', 'BcaB04g19944' => 'bca', 'BcaB05g21548' => 'bca', 'BcaB05g21549' => 'bca', 'BcaB05g23227' => 'bca', 'BcaB06g26256' => 'bca', 'BcaB06g26257' => 'bca', 'BcaB06g28379' => 'bca', 'BcaC02g11159' => 'bca', 'BcaC03g13258' => 'bca', 'BcaC03g13259' => 'bca', 'BcaC05g24456' => 'bca', 'BcaC05g24457' => 'bca', 'BcaC07g36922' => 'bca', 'BcaC07g36923' => 'bca', 'BcaC07g42050' => 'bca', 'BcaC07g42176' => 'bca', 'BcaC07g42195' => 'bca', 'BcaC07g42196' => 'bca', 'BcaNung06674' => 'bca', 'BolC2t06351H' => 'bol', 'BolC2t06352H' => 'bol', 'BolC3t12993H' => 'bol', 'BolC4t23525H' => 'bol', 'BolC4t27475H' => 'bol', 'BolC5t29025H' => 'bol', 'BolC5t29026H' => 'bol', 'BolC8t46898H' => 'bol', 'BolC8t46899H' => 'bol', 'BolC8t52630H' => 'bol', 'BolC8t52765H' => 'bol', 'BolC9t53824H' => 'bol', 'BraA03t09760Z' => 'bra', 'BraA03t10990Z' => 'bra', 'BraA05t20413Z' => 'bra', 'BraA08t35602Z' => 'bra', 'BraA09t36458Z' => 'bra', 'BraA09t42018Z' => 'bra', 'BraA09t42129Z' => 'bra', 'BraA10t42536Z' => 'bra', 'BraA10t42537Z' => 'bra', 'C01p10690' => 'bna', 'C02p03890' => 'bna', 'C02p03900' => 'bna', 'C03p04620' => 'bna', 'C04p19870' => 'bna', 'C04p59670' => 'bna', 'C05p02460' => 'bna', 'C05p02470' => 'bna', 'C08p00980' => 'bna', 'C08p00990' => 'bna', 'C08p51030' => 'bna', 'C08p52360' => 'bna', 'C09p09120' => 'bna', 'CAN.G19.15' => 'can', 'CAN.G251.10' => 'can', 'CAN.G251.9' => 'can', 'CAN.G398.24' => 'can', 'CAN.G410.32' => 'can', 'CAN.G881.2' => 'can', 'CANSAT01G3025' => 'cansat', 'CANSAT78G1211' => 'cansat', 'CANSAT78G1218' => 'cansat', 'CANSAT78G1521' => 'cansat', 'CANSAT78G1670' => 'cansat', 'CARHR003600' => 'chi', 'CARHR003610' => 'chi', 'CARHR006290' => 'chi', 'CARHR006430' => 'chi', 'CARHR124110' => 'chi', 'CARHR203870' => 'chi', 'CARHR203880' => 'chi', 'CARHR203890' => 'chi', 'CARHR276880' => 'chi', 'Carub.0001s0346' => 'cru', 'Carub.0001s0347' => 'cru', 'Carub.0001s0607' => 'cru', 'Carub.0003s2768' => 'cru', 'Carub.0003s2769' => 'cru', 'Carub.0004s1178' => 'cru', 'Carub.0006s0806' => 'cru', 'Carub.0006s0807' => 'cru', 'Carub.0006s0808' => 'cru', 'Carub.0008s0501' => 'cru', 'Carub.0008s2379' => 'cru', 'Ca_08655_v3' => 'car', 'Ca_08922_v3' => 'car', 'Ca_08923_v3' => 'car', 'Ca_09119_v3' => 'car', 'Ca_09703_v3' => 'car', 'Ca_09705_v3' => 'car', 'Ca_09835_v3' => 'car', 'Ca_26403_v3' => 'car', 'Ca_30719_v3' => 'car', 'CBR_g17958' => 'cbr', 'CBR_g40516' => 'cbr', 'Cc00_g05350' => 'ccan', 'Cc01_g18690' => 'ccan', 'Cc03_g04830' => 'ccan', 'Cc03_g04850' => 'ccan', 'CDE02G4469' => 'cde', 'CDE06G0883' => 'cde', 'CDE06G1295' => 'cde', 'CDE06G1390' => 'cde', 'CDE07G0584' => 'cde', 'CDE07G1084' => 'cde', 'CDE08G1259' => 'cde', 'Cfa002341' => 'cfa', 'Cfa024337' => 'cfa', 'Ciclev10004749m.g' => 'ccl', 'Ciclev10006127m.g' => 'ccl', 'Ciclev10019720m.g' => 'ccl', 'Ciclev10022652m.g' => 'ccl', 'CiPaw.01G190400' => 'cil', 'CiPaw.01G190500' => 'cil', 'CiPaw.02G116400' => 'cil', 'CiPaw.02G116500' => 'cil', 'CiPaw.04G183000' => 'cil', 'CiPaw.04G183300' => 'cil', 'ClCG05G004610' => 'cla', 'ClCG05G004620' => 'cla', 'ClCG06G006730' => 'cla', 'ClCG06G006740' => 'cla', 'ClCG11G003690' => 'cla', 'COL.COLO4_08276' => 'col', 'COL.COLO4_08277' => 'col', 'COL.COLO4_15787' => 'col', 'COL.COLO4_15789' => 'col', 'Cpa.g.c44815' => 'cpa', 'Cpa.g.sc52.144' => 'cpa', 'Cpa.g.sc58.46' => 'cpa', 'Cpa.g.sc58.47' => 'cpa', 'Cre08.g360900' => 'cre', 'CsaV3_2G013030' => 'csa', 'CsaV3_2G013050' => 'csa', 'CsaV3_2G015620' => 'csa', 'CsaV3_3G012590' => 'csa', 'CsaV3_3G012600' => 'csa', 'CSS0001641' => 'camsi', 'CSS0008310' => 'camsi', 'CSS0013011' => 'camsi', 'CSS0017147' => 'camsi', 'CSS0022970' => 'camsi', 'CSS0025655' => 'camsi', 'CSS0028665' => 'camsi', 'CSS0029117' => 'camsi', 'CSS0032024' => 'camsi', 'CSS0039681' => 'camsi', 'CSS0046516' => 'camsi', 'CSS0050307' => 'camsi', 'DCAR_005871' => 'dca', 'DCAR_007342' => 'dca', 'DCAR_024228' => 'dca', 'DCAR_027277' => 'dca', 'DCAR_030718' => 'dca', 'Dinv20287' => 'din', 'Dinv22461' => 'din', 'Dinv22464' => 'din', 'Dinv29912' => 'din', 'Dinv29913' => 'din', 'Dinv34580' => 'din', 'Dinv34582' => 'din', 'Dinv44632' => 'din', 'Duzib052G0266' => 'dzi', 'Duzib133G0907' => 'dzi', 'Duzib133G1034' => 'dzi', 'Duzib138G0207' => 'dzi', 'Duzib138G0491' => 'dzi', 'Duzib151G0812' => 'dzi', 'Duzib151G1166' => 'dzi', 'Duzib168G0192' => 'dzi', 'Duzib211G0077' => 'dzi', 'Duzib212G0429' => 'dzi', 'Duzib212G0472' => 'dzi', 'ECA233G2617' => 'eca', 'ECA236G4188' => 'eca', 'ECA240G0936' => 'eca', 'ECA240G1129' => 'eca', 'ECA247G0623' => 'eca', 'EL10Ac5g10451' => 'bvu', 'EL10Ac5g10453' => 'bvu', 'EL10Ac5g10894' => 'bvu', 'Eucgr.H00192' => 'egr', 'Eucgr.H00193' => 'egr', 'Eucgr.H00194' => 'egr', 'Eucgr.J01562' => 'egr', 'Eucgr.K03301' => 'egr', 'FAN02G0632' => 'fan', 'FAN05G5378' => 'fan', 'FAN09G3247' => 'fan', 'FAN12G0435' => 'fan', 'FAN12G2426' => 'fan', 'FAN14G1707' => 'fan', 'FAN14G4725' => 'fan', 'FAN15G2071' => 'fan', 'FAN17G3065' => 'fan', 'FAN19G1376' => 'fan', 'FAN20G0354' => 'fan', 'FAN20G2429' => 'fan', 'FAN20G2658' => 'fan', 'FAN24G2343' => 'fan', 'FAN27G2362' => 'fan', 'FAN28G1765' => 'fan', 'FvH4_1g16020' => 'fve', 'FvH4_2g04890' => 'fve', 'FvH4_2g22270' => 'fve', 'FvH4_4g02630' => 'fve', 'FvH4_4g02640' => 'fve', 'FvH4_6g02650' => 'fve', 'Glyma.02G140600' => 'gma', 'Glyma.03G159900' => 'gma', 'Glyma.05G234800' => 'gma', 'Glyma.07G269600' => 'gma', 'Glyma.08G042300' => 'gma', 'Glyma.10G033500' => 'gma', 'Glyma.10G185200' => 'gma', 'Glyma.17G004300' => 'gma', 'Glyma.19G161900' => 'gma', 'Glyma.20G205100' => 'gma', 'Glyma.20G205200' => 'gma', 'Gohir.A01G139101' => 'ghi', 'Gohir.A02G035600' => 'ghi', 'Gohir.A02G117901' => 'ghi', 'Gohir.A07G210100' => 'ghi', 'Gohir.A07G210200' => 'ghi', 'Gohir.A08G061100' => 'ghi', 'Gohir.A09G223000' => 'ghi', 'Gohir.A09G223100' => 'ghi', 'Gohir.A10G113900' => 'ghi', 'Gohir.A10G114000' => 'ghi', 'Gohir.D02G042300' => 'ghi', 'Gohir.D07G216100' => 'ghi', 'Gohir.D07G216200' => 'ghi', 'Gohir.D08G070400' => 'ghi', 'Gohir.D09G225000' => 'ghi', 'Gohir.D09G225100' => 'ghi', 'Gohir.D10G152300' => 'ghi', 'Gohir.D10G153200' => 'ghi', 'Gohir.D11G133701' => 'ghi', 'Gorai.004G074100' => 'gra', 'Gorai.005G046800' => 'gra', 'Gorai.006G246500' => 'gra', 'Gorai.006G246600' => 'gra', 'Gorai.007G142900' => 'gra', 'Gorai.011G171000' => 'gra', 'Gorai.011G171100' => 'gra', 'Gorai.013G104300' => 'gra', 'Gorai.013G104400' => 'gra', 'GSVIVG01000754001' => 'vvi', 'GSVIVG01000756001' => 'vvi', 'GSVIVG01010903001' => 'vvi', 'GSVIVG01017623001' => 'vvi', 'GSVIVG01018113001' => 'vvi', 'GSVIVG01018116001' => 'vvi', 'GSVIVG01018118001' => 'vvi', 'HanXRQChr03g0076211' => 'han', 'HanXRQChr03g0092431' => 'han', 'HanXRQChr03g0092441' => 'han', 'HanXRQChr03g0092591' => 'han', 'HanXRQChr03g0092671' => 'han', 'HanXRQChr03g0092681' => 'han', 'HanXRQChr03g0092691' => 'han', 'HanXRQChr03g0092701' => 'han', 'HanXRQChr03g0092721' => 'han', 'HanXRQChr03g0092731' => 'han', 'HanXRQChr04g0113681' => 'han', 'HanXRQChr10g0281371' => 'han', 'HanXRQChr11g0337141' => 'han', 'HanXRQChr13g0424521' => 'han', 'HanXRQChr13g0424531' => 'han', 'HanXRQChr13g0424541' => 'han', 'HanXRQChr16g0498221' => 'han', 'Haze_04377' => 'cav', 'Haze_11298' => 'cav', 'Haze_24547' => 'cav', 'Haze_24550' => 'cav', 'Haze_26587' => 'cav', 'Hma1.2p1_0650F.1_g195410' => 'hma', 'Hma1.2p1_0893F.1_g233470' => 'hma', 'HPP92_006508' => 'vpl', 'HPP92_024780' => 'vpl', 'Hund02688' => 'sun', 'Hund09380' => 'sun', 'Hund09381' => 'sun', 'Hund09832' => 'sun', 'Hund09833' => 'sun', 'Hund11351' => 'sun', 'Hund11513' => 'sun', 'Lalb_Chr06g0162591' => 'lal', 'Lalb_Chr06g0162601' => 'lal', 'Lalb_Chr06g0169321' => 'lal', 'Lalb_Chr09g0330951' => 'lal', 'Lalb_Chr16g0387631' => 'lal', 'Lalb_Chr21g0306241' => 'lal', 'Lalb_Chr25g0290051' => 'lal', 'Lalb_Chr25g0290061' => 'lal', 'Lalb_Chr25g0290071' => 'lal', 'Lj1g0003876' => 'lja', 'Lj1P1207T36' => 'lonja', 'Lj2C1156G12' => 'lonja', 'Lj3A793G39' => 'lonja', 'Lj3C580G2' => 'lonja', 'Lj3C780G2' => 'lonja', 'Lj3C780T4' => 'lonja', 'Lj3C793G9' => 'lonja', 'Lj4g0012960' => 'lja', 'Lj5g0021252' => 'lja', 'Lj5g0021484' => 'lja', 'Lj5g0024528' => 'lja', 'Lj6A399T12' => 'lonja', 'Lj6A656G65' => 'lonja', 'Lsat_1_v5_gn_3_125500' => 'lsa', 'Lsat_1_v5_gn_3_125540' => 'lsa', 'Lsat_1_v5_gn_5_72701' => 'lsa', 'Lsat_1_v5_gn_8_91560' => 'lsa', 'Lsat_1_v5_gn_9_9640' => 'lsa', 'Manes.01G200600' => 'mes', 'Manes.01G200700' => 'mes', 'Manes.03G168900' => 'mes', 'Manes.03G169000' => 'mes', 'Manes.05G085801' => 'mes', 'Manes.05G086200' => 'mes', 'Manes.15G036700' => 'mes', 'Manes.15G036900' => 'mes', 'Mapoly0004s0172' => 'mpo', 'Mapoly0023s0001' => 'mpo', 'Mapoly0142s0012' => 'mpo', 'MBI01_g32854_MAGBIO' => 'mbi', 'MBI11_g24427_MAGBIO' => 'mbi', 'MBI11_g47319_MAGBIO' => 'mbi', 'MCO01G433' => 'mco', 'MD00G1187800' => 'mdo', 'MD04G1226500' => 'mdo', 'MD05G1203900' => 'mdo', 'MD10G1191100' => 'mdo', 'MD12G1243500' => 'mdo', 'MD13G1207000' => 'mdo', 'MD13G1207100' => 'mdo', 'MD16G1208600' => 'mdo', 'Medtr1g050352' => 'mtr', 'Medtr1g070385' => 'mtr', 'Medtr1g070450' => 'mtr', 'Medtr1g075200' => 'mtr', 'Medtr1g075250' => 'mtr', 'Medtr1g075260' => 'mtr', 'Medtr1g475250' => 'mtr', 'Medtr4g075450' => 'mtr', 'Medtr7g096300' => 'mtr', 'Medtr8g105110' => 'mtr', 'MELO3C006470.2' => 'cme', 'MELO3C006471.2' => 'cme', 'MELO3C020772.2' => 'cme', 'MELO3C026780.2' => 'cme', 'MELO3C026781.2' => 'cme', 'Migut.D00390' => 'egut', 'Migut.G00435' => 'egut', 'Migut.G00436' => 'egut', 'Migut.G00718' => 'egut', 'MSTRG.21891' => 'ama', 'MSTRG.26910' => 'ama', 'MSTRG.4099' => 'ama', 'MSTRG.9925' => 'ama', 'Nitab4.5_0000165g0010' => 'nta', 'Nitab4.5_0000209g0180' => 'nta', 'Nitab4.5_0000244g0440' => 'nta', 'Nitab4.5_0000525g0220' => 'nta', 'Nitab4.5_0001597g0020' => 'nta', 'Nitab4.5_0001878g0040' => 'nta', 'Nitab4.5_0001878g0060' => 'nta', 'Nitab4.5_0002838g0100' => 'nta', 'Nitab4.5_0002838g0120' => 'nta', 'Nitab4.5_0004798g0030' => 'nta', 'Nitab4.5_0005420g0010' => 'nta', 'Nitab4.5_0005507g0010' => 'nta', 'Nitab4.5_0005574g0020' => 'nta', 'Nitab4.5_0005838g0010' => 'nta', 'Nitab4.5_0010580g0020' => 'nta', 'Nn1g02599' => 'nnu', 'Nn1g02608' => 'nnu', 'Nn3g17742' => 'nnu', 'Nn3g19534' => 'nnu', 'Nn3g19535' => 'nnu', 'Oeu008790.1' => 'oeu', 'Oeu008792.1' => 'oeu', 'Oeu032590.1' => 'oeu', 'Oeu035349.1' => 'oeu', 'Oeu049791.1' => 'oeu', 'Os01g0774500' => 'osa', 'Os03g0628800' => 'osa', 'Os03g0798600' => 'osa', 'Os05g0508800' => 'osa', 'Peaxi162Scf00036g02018' => 'pax', 'Peaxi162Scf00578g00032' => 'pax', 'Peaxi162Scf00578g00317' => 'pax', 'Peaxi162Scf00785g00114' => 'pax', 'Peaxi162Scf00813g00119' => 'pax', 'Peaxi162Scf00906g00227' => 'pax', 'PGR004G0875' => 'pgr', 'PGR004G2424' => 'pgr', 'PGR031G1239' => 'pgr', 'PGR031G2474' => 'pgr', 'PGR044G0423' => 'pgr', 'PGSC0003DMG400001128' => 'stu', 'PGSC0003DMG400007336' => 'stu', 'PGSC0003DMG400016318' => 'stu', 'PGSC0003DMG400016319' => 'stu', 'PGSC0003DMG400018074' => 'stu', 'Phvul.001G157700' => 'pvu', 'Phvul.002G148550' => 'pvu', 'Phvul.002G320200' => 'pvu', 'Phvul.003G089200' => 'pvu', 'Phvul.007G126000' => 'pvu', 'Phvul.007G126100' => 'pvu', 'Phvul.007G178000' => 'pvu', 'Phvul.007G178200' => 'pvu', 'Potri.002G043000' => 'ptr', 'Potri.002G043200' => 'ptr', 'Potri.003G123750' => 'ptr', 'Potri.005G055401' => 'ptr', 'Potri.005G219700' => 'ptr', 'Potri.005G220000' => 'ptr', 'Potri.008G161901' => 'ptr', 'Potri.008G162000' => 'ptr', 'Potri.008G162400' => 'ptr', 'Potri.010G076900' => 'ptr', 'Pp3c12_9180' => 'ppa', 'Pp3c13_19770' => 'ppa', 'Pp3c14_22950' => 'ppa', 'Pp3c16_12160' => 'ppa', 'Pp3c27_7820' => 'ppa', 'Pp3c2_3490' => 'ppa', 'Pp3c3_23700' => 'ppa', 'Pp3c3_36520' => 'ppa', 'Pp3c4_15250' => 'ppa', 'PRCOL_00007002' => 'pco', 'Prupe.1G030600' => 'ppe', 'Prupe.1G030700' => 'ppe', 'Prupe.6G345200' => 'ppe', 'Prupe.8G230300' => 'ppe', 'Prupe.8G230500' => 'ppe', 'Psat3g059600' => 'psa', 'Psat5g200920' => 'psa', 'Psat6g056440' => 'psa', 'Psat6g057360' => 'psa', 'Psat6g134120' => 'psa', 'Psat6g134160' => 'psa', 'Psat7g008640' => 'psa', 'Psat7g185240' => 'psa', 'PSO017G1330' => 'pso', 'PSO063G6097' => 'pso', 'PSO170G0835' => 'pso', 'PSO170G2499' => 'pso', 'PSO210G5058' => 'pso', 'PSO210G6154' => 'pso', 'PSO585G0031' => 'pso', 'PSO832G0264' => 'pso', 'PSO832G4288' => 'pso', 'QL03p027355' => 'qlo', 'QL03p027430' => 'qlo', 'QL04p081380' => 'qlo', 'QL06p015642' => 'qlo', 'QL06p015650' => 'qlo', 'QL06p015686' => 'qlo', 'QL12p042927' => 'qlo', 'QL93p1863_0035' => 'qlo', 'RcHm_v2.0_Chr3g0450581' => 'rch', 'RcHm_v2.0_Chr4g0390371' => 'rch', 'RcHm_v2.0_Chr4g0390381' => 'rch', 'RcHm_v2.0_Chr4g0390491' => 'rch', 'RcHm_v2.0_Chr4g0390501' => 'rch', 'RcHm_v2.0_Chr6g0289231' => 'rch', 'Rhsim04G0190400' => 'rsi', 'Rhsim04G0190500' => 'rsi', 'Rhsim04G0190600' => 'rsi', 'Rhsim13G0031400' => 'rsi', 'Rhsim13G0165600' => 'rsi', 'RhsimUnG0114600' => 'rsi', 'RhsimUnG0114700' => 'rsi', 'Sabra02G0034800' => 'sbr', 'Sabra02G0035100' => 'sbr', 'Sabra05G0168600' => 'sbr', 'Sabra05G0168800' => 'sbr', 'Sabra08G0123700' => 'sbr', 'Sabra10G0031900' => 'sbr', 'Sabra13G0039000' => 'sbr', 'SalBow2G0782' => 'sbo', 'SalBow2G1403' => 'sbo', 'SalBow4G0074' => 'sbo', 'SalBow4G2635' => 'sbo', 'SalBow5G3010' => 'sbo', 'Sc05g0000870' => 'sci', 'Sc05g0000890' => 'sci', 'Sc13g0005000' => 'sci', 'Sc13g0005030' => 'sci', 'Sc19g0003790' => 'sci', 'Sc19g0003800' => 'sci', 'Sed0003467' => 'sed', 'Sed0009355' => 'sed', 'Sed0009894' => 'sed', 'Sed0011972' => 'sed', 'Sed0021483' => 'sed', 'Sed0021750' => 'sed', 'Sed0026279' => 'sed', 'SEGI_05312' => 'sgi', 'SEGI_10112' => 'sgi', 'SEGI_15835' => 'sgi', 'SEGI_30386' => 'sgi', 'SEGI_34122' => 'sgi', 'SEGI_35063' => 'sgi', 'SGA_v2.0_scaffold101G29794' => 'sas', 'SGA_v2.0_scaffold1G00573' => 'sas', 'SGA_v2.0_scaffold79G25637' => 'sas', 'SGA_v2.0_scaffold88G27283' => 'sas', 'SGA_v2.0_scaffold88G27285' => 'sas', 'SGA_v2.0_scaffold88G27331' => 'sas', 'SHI09937' => 'shi', 'SMO119G0302' => 'smo', 'SMO137G0231' => 'smo', 'SMO367G1151' => 'smo', 'Solyc02g082000.3' => 'sly', 'Solyc06g031670.3' => 'sly', 'Solyc06g053810.3' => 'sly', 'Solyc07g025457.1' => 'sly', 'Solyc08g059740.1' => 'sly', 'Solyc08g059750.3' => 'sly', 'Solyc09g083370.3' => 'sly', 'Solyc12g038950.3' => 'sly', 'Sopen02g026630' => 'spe', 'Sopen06g018930' => 'spe', 'Sopen06g018940' => 'spe', 'Sopen08g009460' => 'spe', 'Sopen09g032290' => 'spe', 'Sp1g03080' => 'spa', 'Sp1g03090' => 'spa', 'Sp1g05480' => 'spa', 'Sp2g07860' => 'spa', 'Sp2g08430' => 'spa', 'Sp2g08440' => 'spa', 'Sp2g26200' => 'spa', 'Sp4g13170' => 'spa', 'Sp6g33840' => 'spa', 'SpUn1204_0010' => 'spa', 'TAR365G0908' => 'tar', 'TAR381G1270' => 'tar', 'TAR381G1651' => 'tar', 'TAR625G1131' => 'tar', 'TAR633G0962' => 'tar', 'TAR633G1729' => 'tar', 'TAR633G1864' => 'tar', 'TAR636G0221' => 'tar', 'TAR636G0314' => 'tar', 'TAR636G3202' => 'tar', 'THA.LOC104800805' => 'tha', 'THA.LOC104801096' => 'tha', 'THA.LOC104801555' => 'tha', 'THA.LOC104808491' => 'tha', 'THA.LOC104808595' => 'tha', 'THA.LOC104815985' => 'tha', 'THA.LOC104822250' => 'tha', 'THA.LOC104826071' => 'tha', 'Thecc.01G265200' => 'tca', 'Thecc.01G265300' => 'tca', 'Thecc.01G265700' => 'tca', 'Thecc.03G109100' => 'tca', 'Thecc.04G245900' => 'tca', 'Thecc.04G246000' => 'tca', 'Thhalv10003334m.g' => 'esa', 'Thhalv10005508m.g' => 'esa', 'Thhalv10005643m.g' => 'esa', 'Thhalv10007316m.g' => 'esa', 'Thhalv10009006m.g' => 'esa', 'Thhalv10009309m.g' => 'esa', 'Thhalv10014917m.g' => 'esa', 'Thhalv10014919m.g' => 'esa', 'Thhalv10015393m.g' => 'esa', 'Thhalv10016515m.g' => 'esa', 'Thhalv10029242m.g' => 'esa', 'TPR.G16654' => 'tpr', 'TPR.G20589' => 'tpr', 'TPR.G23029' => 'tpr', 'TPR.G27731' => 'tpr', 'TPR.G28889' => 'tpr', 'TPR.G28899' => 'tpr', 'TPR.G30846' => 'tpr', 'TPR.G5452' => 'tpr', 'TPR.G5713' => 'tpr', 'TPR.G9046' => 'tpr', 'TPR.G9061' => 'tpr', 'TWI09G1075' => 'twi', 'TWI12G0806' => 'twi', 'TWI18G0108' => 'twi', 'TWI53G1361' => 'twi', 'TWI73G0185' => 'twi', 'TWI73G0427' => 'twi', 'unitig_37.g12001' => 'ugi', 'unitig_747.g21660' => 'ugi', 'unitig_748.g7232' => 'ugi', 'unitig_748.g7315' => 'ugi', 'unitig_85.g27262' => 'ugi', 'unitig_92.g28220' => 'ugi', 'vmacro02632' => 'vma', 'vmacro08410' => 'vma', 'vmacro08411' => 'vma', 'vmacro15407' => 'vma', 'VMungo0251G3619' => 'vmu', 'VMungo0720G1204' => 'vmu', 'VMungo0720G1918' => 'vmu', 'VMungo0720G2387' => 'vmu', 'VMungo0720G2961' => 'vmu', 'VMungo1215G2154' => 'vmu', 'VMungo1383G2411' => 'vmu', 'Zm00001eb051130' => 'zma', 'Zm00001eb116830' => 'zma', 'Zm00001eb116850' => 'zma', 'Zm00001eb151740' => 'zma', 'Zm00001eb292360' => 'zma', 'Zm00001eb301640' => 'zma' ), 'gf_id' => 'HOM05D000856', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000856' ), 'data_identifier' => 'HOM05D000856', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000856', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p00010' => 'bna', 'A03p04160' => 'bna', 'A03p17160' => 'bna', 'A04p23370' => 'bna', 'A05p14860' => 'bna', 'A08p37020' => 'bna', 'A09p08050' => 'bna', 'A09p66800' => 'bna', 'A09p67940' => 'bna', 'A10p02680' => 'bna', 'A10p05320' => 'bna', 'Aa31LG1G20560' => 'aar', 'Aa31LG1G20610' => 'aar', 'Aa31LG1G7810' => 'aar', 'Aa31LG5G3590' => 'aar', 'Aa31LG5G6140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3819' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4683' => 'aag', 'Actinidia04480' => 'ach', 'Actinidia05466' => 'ach', 'Actinidia08445' => 'ach', 'Actinidia21170' => 'ach', 'Actinidia24812' => 'ach', 'Actinidia24951' => 'ach', 'Actinidia40088' => 'ach', 'Ah.02g111660' => 'amhyb', 'Ah.11g048900' => 'amhyb', 'Ah.11g049910' => 'amhyb', 'AL1G13870' => 'aly', 'AL1G13880' => 'aly', 'AL1G16760' => 'aly', 'AL390U10020' => 'aly', 'AL4G25520' => 'aly', 'AL6G19890' => 'aly', 'AL6G19900' => 'aly', 'AL6G19910' => 'aly', 'AL8G40100' => 'aly', 'Aqoxy2G03562' => 'aox', 'Aqoxy5G00316' => 'aox', 'Aqoxy5G00926' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1628KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1H403S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2FU6SJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.882I6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8YRY2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YN1SN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AF70II' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZA8L1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F916KL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHRD8H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KTZ8QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S22EMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8M29T' => 'arhy', 'AT1G04270' => 'ath', 'AT1G04280' => 'ath', 'AT1G06750' => 'ath', 'AT1G33850' => 'ath', 'AT2G30630' => 'ath', 'AT5G09490' => 'ath', 'AT5G09500' => 'ath', 'AT5G09510' => 'ath', 'AT5G43640' => 'ath', 'AT5G63070' => 'ath', 'ATR0605G315' => 'atr', 'Atru.chr11.175' => 'acertr', 'Atru.chr11.653' => 'acertr', 'Atru.chr3.1616' => 'acertr', 'Atru.chr4.2230' => 'acertr', 'Atru.chr4.2232' => 'acertr', 'Atru.chr5.1598' => 'acertr', 'Atru.chr5.1600' => 'acertr', 'Atru.chr5.2188' => 'acertr', 'AUR62008326' => 'cqu', 'AUR62011922' => 'cqu', 'AUR62011924' => 'cqu', 'AUR62021771' => 'cqu', 'AUR62032237' => 'cqu', 'AUR62032240' => 'cqu', 'BcaB01g05572' => 'bca', 'BcaB02g10337' => 'bca', 'BcaB04g19944' => 'bca', 'BcaB05g21548' => 'bca', 'BcaB05g21549' => 'bca', 'BcaB05g23227' => 'bca', 'BcaB06g26256' => 'bca', 'BcaB06g26257' => 'bca', 'BcaB06g28379' => 'bca', 'BcaC02g11159' => 'bca', 'BcaC03g13258' => 'bca', 'BcaC03g13259' => 'bca', 'BcaC05g24456' => 'bca', 'BcaC05g24457' => 'bca', 'BcaC07g36922' => 'bca', 'BcaC07g36923' => 'bca', 'BcaC07g42050' => 'bca', 'BcaC07g42176' => 'bca', 'BcaC07g42195' => 'bca', 'BcaC07g42196' => 'bca', 'BcaNung06674' => 'bca', 'BolC2t06351H' => 'bol', 'BolC2t06352H' => 'bol', 'BolC3t12993H' => 'bol', 'BolC4t23525H' => 'bol', 'BolC4t27475H' => 'bol', 'BolC5t29025H' => 'bol', 'BolC5t29026H' => 'bol', 'BolC8t46898H' => 'bol', 'BolC8t46899H' => 'bol', 'BolC8t52630H' => 'bol', 'BolC8t52765H' => 'bol', 'BolC9t53824H' => 'bol', 'BraA03t09760Z' => 'bra', 'BraA03t10990Z' => 'bra', 'BraA05t20413Z' => 'bra', 'BraA08t35602Z' => 'bra', 'BraA09t36458Z' => 'bra', 'BraA09t42018Z' => 'bra', 'BraA09t42129Z' => 'bra', 'BraA10t42536Z' => 'bra', 'BraA10t42537Z' => 'bra', 'C01p10690' => 'bna', 'C02p03890' => 'bna', 'C02p03900' => 'bna', 'C03p04620' => 'bna', 'C04p19870' => 'bna', 'C04p59670' => 'bna', 'C05p02460' => 'bna', 'C05p02470' => 'bna', 'C08p00980' => 'bna', 'C08p00990' => 'bna', 'C08p51030' => 'bna', 'C08p52360' => 'bna', 'C09p09120' => 'bna', 'CAN.G19.15' => 'can', 'CAN.G251.10' => 'can', 'CAN.G251.9' => 'can', 'CAN.G398.24' => 'can', 'CAN.G410.32' => 'can', 'CAN.G881.2' => 'can', 'CANSAT01G3025' => 'cansat', 'CANSAT78G1211' => 'cansat', 'CANSAT78G1218' => 'cansat', 'CANSAT78G1521' => 'cansat', 'CANSAT78G1670' => 'cansat', 'CARHR003600' => 'chi', 'CARHR003610' => 'chi', 'CARHR006290' => 'chi', 'CARHR006430' => 'chi', 'CARHR124110' => 'chi', 'CARHR203870' => 'chi', 'CARHR203880' => 'chi', 'CARHR203890' => 'chi', 'CARHR276880' => 'chi', 'Carub.0001s0346' => 'cru', 'Carub.0001s0347' => 'cru', 'Carub.0001s0607' => 'cru', 'Carub.0003s2768' => 'cru', 'Carub.0003s2769' => 'cru', 'Carub.0004s1178' => 'cru', 'Carub.0006s0806' => 'cru', 'Carub.0006s0807' => 'cru', 'Carub.0006s0808' => 'cru', 'Carub.0008s0501' => 'cru', 'Carub.0008s2379' => 'cru', 'Ca_08655_v3' => 'car', 'Ca_08922_v3' => 'car', 'Ca_08923_v3' => 'car', 'Ca_09119_v3' => 'car', 'Ca_09703_v3' => 'car', 'Ca_09705_v3' => 'car', 'Ca_09835_v3' => 'car', 'Ca_26403_v3' => 'car', 'Ca_30719_v3' => 'car', 'CBR_g17958' => 'cbr', 'CBR_g40516' => 'cbr', 'Cc00_g05350' => 'ccan', 'Cc01_g18690' => 'ccan', 'Cc03_g04830' => 'ccan', 'Cc03_g04850' => 'ccan', 'CDE02G4469' => 'cde', 'CDE06G0883' => 'cde', 'CDE06G1295' => 'cde', 'CDE06G1390' => 'cde', 'CDE07G0584' => 'cde', 'CDE07G1084' => 'cde', 'CDE08G1259' => 'cde', 'Cfa002341' => 'cfa', 'Cfa024337' => 'cfa', 'Ciclev10004749m.g' => 'ccl', 'Ciclev10006127m.g' => 'ccl', 'Ciclev10019720m.g' => 'ccl', 'Ciclev10022652m.g' => 'ccl', 'CiPaw.01G190400' => 'cil', 'CiPaw.01G190500' => 'cil', 'CiPaw.02G116400' => 'cil', 'CiPaw.02G116500' => 'cil', 'CiPaw.04G183000' => 'cil', 'CiPaw.04G183300' => 'cil', 'ClCG05G004610' => 'cla', 'ClCG05G004620' => 'cla', 'ClCG06G006730' => 'cla', 'ClCG06G006740' => 'cla', 'ClCG11G003690' => 'cla', 'COL.COLO4_08276' => 'col', 'COL.COLO4_08277' => 'col', 'COL.COLO4_15787' => 'col', 'COL.COLO4_15789' => 'col', 'Cpa.g.c44815' => 'cpa', 'Cpa.g.sc52.144' => 'cpa', 'Cpa.g.sc58.46' => 'cpa', 'Cpa.g.sc58.47' => 'cpa', 'Cre08.g360900' => 'cre', 'CsaV3_2G013030' => 'csa', 'CsaV3_2G013050' => 'csa', 'CsaV3_2G015620' => 'csa', 'CsaV3_3G012590' => 'csa', 'CsaV3_3G012600' => 'csa', 'CSS0001641' => 'camsi', 'CSS0008310' => 'camsi', 'CSS0013011' => 'camsi', 'CSS0017147' => 'camsi', 'CSS0022970' => 'camsi', 'CSS0025655' => 'camsi', 'CSS0028665' => 'camsi', 'CSS0029117' => 'camsi', 'CSS0032024' => 'camsi', 'CSS0039681' => 'camsi', 'CSS0046516' => 'camsi', 'CSS0050307' => 'camsi', 'DCAR_005871' => 'dca', 'DCAR_007342' => 'dca', 'DCAR_024228' => 'dca', 'DCAR_027277' => 'dca', 'DCAR_030718' => 'dca', 'Dinv20287' => 'din', 'Dinv22461' => 'din', 'Dinv22464' => 'din', 'Dinv29912' => 'din', 'Dinv29913' => 'din', 'Dinv34580' => 'din', 'Dinv34582' => 'din', 'Dinv44632' => 'din', 'Duzib052G0266' => 'dzi', 'Duzib133G0907' => 'dzi', 'Duzib133G1034' => 'dzi', 'Duzib138G0207' => 'dzi', 'Duzib138G0491' => 'dzi', 'Duzib151G0812' => 'dzi', 'Duzib151G1166' => 'dzi', 'Duzib168G0192' => 'dzi', 'Duzib211G0077' => 'dzi', 'Duzib212G0429' => 'dzi', 'Duzib212G0472' => 'dzi', 'ECA233G2617' => 'eca', 'ECA236G4188' => 'eca', 'ECA240G0936' => 'eca', 'ECA240G1129' => 'eca', 'ECA247G0623' => 'eca', 'EL10Ac5g10451' => 'bvu', 'EL10Ac5g10453' => 'bvu', 'EL10Ac5g10894' => 'bvu', 'Eucgr.H00192' => 'egr', 'Eucgr.H00193' => 'egr', 'Eucgr.H00194' => 'egr', 'Eucgr.J01562' => 'egr', 'Eucgr.K03301' => 'egr', 'FAN02G0632' => 'fan', 'FAN05G5378' => 'fan', 'FAN09G3247' => 'fan', 'FAN12G0435' => 'fan', 'FAN12G2426' => 'fan', 'FAN14G1707' => 'fan', 'FAN14G4725' => 'fan', 'FAN15G2071' => 'fan', 'FAN17G3065' => 'fan', 'FAN19G1376' => 'fan', 'FAN20G0354' => 'fan', 'FAN20G2429' => 'fan', 'FAN20G2658' => 'fan', 'FAN24G2343' => 'fan', 'FAN27G2362' => 'fan', 'FAN28G1765' => 'fan', 'FvH4_1g16020' => 'fve', 'FvH4_2g04890' => 'fve', 'FvH4_2g22270' => 'fve', 'FvH4_4g02630' => 'fve', 'FvH4_4g02640' => 'fve', 'FvH4_6g02650' => 'fve', 'Glyma.02G140600' => 'gma', 'Glyma.03G159900' => 'gma', 'Glyma.05G234800' => 'gma', 'Glyma.07G269600' => 'gma', 'Glyma.08G042300' => 'gma', 'Glyma.10G033500' => 'gma', 'Glyma.10G185200' => 'gma', 'Glyma.17G004300' => 'gma', 'Glyma.19G161900' => 'gma', 'Glyma.20G205100' => 'gma', 'Glyma.20G205200' => 'gma', 'Gohir.A01G139101' => 'ghi', 'Gohir.A02G035600' => 'ghi', 'Gohir.A02G117901' => 'ghi', 'Gohir.A07G210100' => 'ghi', 'Gohir.A07G210200' => 'ghi', 'Gohir.A08G061100' => 'ghi', 'Gohir.A09G223000' => 'ghi', 'Gohir.A09G223100' => 'ghi', 'Gohir.A10G113900' => 'ghi', 'Gohir.A10G114000' => 'ghi', 'Gohir.D02G042300' => 'ghi', 'Gohir.D07G216100' => 'ghi', 'Gohir.D07G216200' => 'ghi', 'Gohir.D08G070400' => 'ghi', 'Gohir.D09G225000' => 'ghi', 'Gohir.D09G225100' => 'ghi', 'Gohir.D10G152300' => 'ghi', 'Gohir.D10G153200' => 'ghi', 'Gohir.D11G133701' => 'ghi', 'Gorai.004G074100' => 'gra', 'Gorai.005G046800' => 'gra', 'Gorai.006G246500' => 'gra', 'Gorai.006G246600' => 'gra', 'Gorai.007G142900' => 'gra', 'Gorai.011G171000' => 'gra', 'Gorai.011G171100' => 'gra', 'Gorai.013G104300' => 'gra', 'Gorai.013G104400' => 'gra', 'GSVIVG01000754001' => 'vvi', 'GSVIVG01000756001' => 'vvi', 'GSVIVG01010903001' => 'vvi', 'GSVIVG01017623001' => 'vvi', 'GSVIVG01018113001' => 'vvi', 'GSVIVG01018116001' => 'vvi', 'GSVIVG01018118001' => 'vvi', 'HanXRQChr03g0076211' => 'han', 'HanXRQChr03g0092431' => 'han', 'HanXRQChr03g0092441' => 'han', 'HanXRQChr03g0092591' => 'han', 'HanXRQChr03g0092671' => 'han', 'HanXRQChr03g0092681' => 'han', 'HanXRQChr03g0092691' => 'han', 'HanXRQChr03g0092701' => 'han', 'HanXRQChr03g0092721' => 'han', 'HanXRQChr03g0092731' => 'han', 'HanXRQChr04g0113681' => 'han', 'HanXRQChr10g0281371' => 'han', 'HanXRQChr11g0337141' => 'han', 'HanXRQChr13g0424521' => 'han', 'HanXRQChr13g0424531' => 'han', 'HanXRQChr13g0424541' => 'han', 'HanXRQChr16g0498221' => 'han', 'Haze_04377' => 'cav', 'Haze_11298' => 'cav', 'Haze_24547' => 'cav', 'Haze_24550' => 'cav', 'Haze_26587' => 'cav', 'Hma1.2p1_0650F.1_g195410' => 'hma', 'Hma1.2p1_0893F.1_g233470' => 'hma', 'HPP92_006508' => 'vpl', 'HPP92_024780' => 'vpl', 'Hund02688' => 'sun', 'Hund09380' => 'sun', 'Hund09381' => 'sun', 'Hund09832' => 'sun', 'Hund09833' => 'sun', 'Hund11351' => 'sun', 'Hund11513' => 'sun', 'Lalb_Chr06g0162591' => 'lal', 'Lalb_Chr06g0162601' => 'lal', 'Lalb_Chr06g0169321' => 'lal', 'Lalb_Chr09g0330951' => 'lal', 'Lalb_Chr16g0387631' => 'lal', 'Lalb_Chr21g0306241' => 'lal', 'Lalb_Chr25g0290051' => 'lal', 'Lalb_Chr25g0290061' => 'lal', 'Lalb_Chr25g0290071' => 'lal', 'Lj1g0003876' => 'lja', 'Lj1P1207T36' => 'lonja', 'Lj2C1156G12' => 'lonja', 'Lj3A793G39' => 'lonja', 'Lj3C580G2' => 'lonja', 'Lj3C780G2' => 'lonja', 'Lj3C780T4' => 'lonja', 'Lj3C793G9' => 'lonja', 'Lj4g0012960' => 'lja', 'Lj5g0021252' => 'lja', 'Lj5g0021484' => 'lja', 'Lj5g0024528' => 'lja', 'Lj6A399T12' => 'lonja', 'Lj6A656G65' => 'lonja', 'Lsat_1_v5_gn_3_125500' => 'lsa', 'Lsat_1_v5_gn_3_125540' => 'lsa', 'Lsat_1_v5_gn_5_72701' => 'lsa', 'Lsat_1_v5_gn_8_91560' => 'lsa', 'Lsat_1_v5_gn_9_9640' => 'lsa', 'Manes.01G200600' => 'mes', 'Manes.01G200700' => 'mes', 'Manes.03G168900' => 'mes', 'Manes.03G169000' => 'mes', 'Manes.05G085801' => 'mes', 'Manes.05G086200' => 'mes', 'Manes.15G036700' => 'mes', 'Manes.15G036900' => 'mes', 'Mapoly0004s0172' => 'mpo', 'Mapoly0023s0001' => 'mpo', 'Mapoly0142s0012' => 'mpo', 'MBI01_g32854_MAGBIO' => 'mbi', 'MBI11_g24427_MAGBIO' => 'mbi', 'MBI11_g47319_MAGBIO' => 'mbi', 'MCO01G433' => 'mco', 'MD00G1187800' => 'mdo', 'MD04G1226500' => 'mdo', 'MD05G1203900' => 'mdo', 'MD10G1191100' => 'mdo', 'MD12G1243500' => 'mdo', 'MD13G1207000' => 'mdo', 'MD13G1207100' => 'mdo', 'MD16G1208600' => 'mdo', 'Medtr1g050352' => 'mtr', 'Medtr1g070385' => 'mtr', 'Medtr1g070450' => 'mtr', 'Medtr1g075200' => 'mtr', 'Medtr1g075250' => 'mtr', 'Medtr1g075260' => 'mtr', 'Medtr1g475250' => 'mtr', 'Medtr4g075450' => 'mtr', 'Medtr7g096300' => 'mtr', 'Medtr8g105110' => 'mtr', 'MELO3C006470.2' => 'cme', 'MELO3C006471.2' => 'cme', 'MELO3C020772.2' => 'cme', 'MELO3C026780.2' => 'cme', 'MELO3C026781.2' => 'cme', 'Migut.D00390' => 'egut', 'Migut.G00435' => 'egut', 'Migut.G00436' => 'egut', 'Migut.G00718' => 'egut', 'MSTRG.21891' => 'ama', 'MSTRG.26910' => 'ama', 'MSTRG.4099' => 'ama', 'MSTRG.9925' => 'ama', 'Nitab4.5_0000165g0010' => 'nta', 'Nitab4.5_0000209g0180' => 'nta', 'Nitab4.5_0000244g0440' => 'nta', 'Nitab4.5_0000525g0220' => 'nta', 'Nitab4.5_0001597g0020' => 'nta', 'Nitab4.5_0001878g0040' => 'nta', 'Nitab4.5_0001878g0060' => 'nta', 'Nitab4.5_0002838g0100' => 'nta', 'Nitab4.5_0002838g0120' => 'nta', 'Nitab4.5_0004798g0030' => 'nta', 'Nitab4.5_0005420g0010' => 'nta', 'Nitab4.5_0005507g0010' => 'nta', 'Nitab4.5_0005574g0020' => 'nta', 'Nitab4.5_0005838g0010' => 'nta', 'Nitab4.5_0010580g0020' => 'nta', 'Nn1g02599' => 'nnu', 'Nn1g02608' => 'nnu', 'Nn3g17742' => 'nnu', 'Nn3g19534' => 'nnu', 'Nn3g19535' => 'nnu', 'Oeu008790.1' => 'oeu', 'Oeu008792.1' => 'oeu', 'Oeu032590.1' => 'oeu', 'Oeu035349.1' => 'oeu', 'Oeu049791.1' => 'oeu', 'Os01g0774500' => 'osa', 'Os03g0628800' => 'osa', 'Os03g0798600' => 'osa', 'Os05g0508800' => 'osa', 'Peaxi162Scf00036g02018' => 'pax', 'Peaxi162Scf00578g00032' => 'pax', 'Peaxi162Scf00578g00317' => 'pax', 'Peaxi162Scf00785g00114' => 'pax', 'Peaxi162Scf00813g00119' => 'pax', 'Peaxi162Scf00906g00227' => 'pax', 'PGR004G0875' => 'pgr', 'PGR004G2424' => 'pgr', 'PGR031G1239' => 'pgr', 'PGR031G2474' => 'pgr', 'PGR044G0423' => 'pgr', 'PGSC0003DMG400001128' => 'stu', 'PGSC0003DMG400007336' => 'stu', 'PGSC0003DMG400016318' => 'stu', 'PGSC0003DMG400016319' => 'stu', 'PGSC0003DMG400018074' => 'stu', 'Phvul.001G157700' => 'pvu', 'Phvul.002G148550' => 'pvu', 'Phvul.002G320200' => 'pvu', 'Phvul.003G089200' => 'pvu', 'Phvul.007G126000' => 'pvu', 'Phvul.007G126100' => 'pvu', 'Phvul.007G178000' => 'pvu', 'Phvul.007G178200' => 'pvu', 'Potri.002G043000' => 'ptr', 'Potri.002G043200' => 'ptr', 'Potri.003G123750' => 'ptr', 'Potri.005G055401' => 'ptr', 'Potri.005G219700' => 'ptr', 'Potri.005G220000' => 'ptr', 'Potri.008G161901' => 'ptr', 'Potri.008G162000' => 'ptr', 'Potri.008G162400' => 'ptr', 'Potri.010G076900' => 'ptr', 'Pp3c12_9180' => 'ppa', 'Pp3c13_19770' => 'ppa', 'Pp3c14_22950' => 'ppa', 'Pp3c16_12160' => 'ppa', 'Pp3c27_7820' => 'ppa', 'Pp3c2_3490' => 'ppa', 'Pp3c3_23700' => 'ppa', 'Pp3c3_36520' => 'ppa', 'Pp3c4_15250' => 'ppa', 'PRCOL_00007002' => 'pco', 'Prupe.1G030600' => 'ppe', 'Prupe.1G030700' => 'ppe', 'Prupe.6G345200' => 'ppe', 'Prupe.8G230300' => 'ppe', 'Prupe.8G230500' => 'ppe', 'Psat3g059600' => 'psa', 'Psat5g200920' => 'psa', 'Psat6g056440' => 'psa', 'Psat6g057360' => 'psa', 'Psat6g134120' => 'psa', 'Psat6g134160' => 'psa', 'Psat7g008640' => 'psa', 'Psat7g185240' => 'psa', 'PSO017G1330' => 'pso', 'PSO063G6097' => 'pso', 'PSO170G0835' => 'pso', 'PSO170G2499' => 'pso', 'PSO210G5058' => 'pso', 'PSO210G6154' => 'pso', 'PSO585G0031' => 'pso', 'PSO832G0264' => 'pso', 'PSO832G4288' => 'pso', 'QL03p027355' => 'qlo', 'QL03p027430' => 'qlo', 'QL04p081380' => 'qlo', 'QL06p015642' => 'qlo', 'QL06p015650' => 'qlo', 'QL06p015686' => 'qlo', 'QL12p042927' => 'qlo', 'QL93p1863_0035' => 'qlo', 'RcHm_v2.0_Chr3g0450581' => 'rch', 'RcHm_v2.0_Chr4g0390371' => 'rch', 'RcHm_v2.0_Chr4g0390381' => 'rch', 'RcHm_v2.0_Chr4g0390491' => 'rch', 'RcHm_v2.0_Chr4g0390501' => 'rch', 'RcHm_v2.0_Chr6g0289231' => 'rch', 'Rhsim04G0190400' => 'rsi', 'Rhsim04G0190500' => 'rsi', 'Rhsim04G0190600' => 'rsi', 'Rhsim13G0031400' => 'rsi', 'Rhsim13G0165600' => 'rsi', 'RhsimUnG0114600' => 'rsi', 'RhsimUnG0114700' => 'rsi', 'Sabra02G0034800' => 'sbr', 'Sabra02G0035100' => 'sbr', 'Sabra05G0168600' => 'sbr', 'Sabra05G0168800' => 'sbr', 'Sabra08G0123700' => 'sbr', 'Sabra10G0031900' => 'sbr', 'Sabra13G0039000' => 'sbr', 'SalBow2G0782' => 'sbo', 'SalBow2G1403' => 'sbo', 'SalBow4G0074' => 'sbo', 'SalBow4G2635' => 'sbo', 'SalBow5G3010' => 'sbo', 'Sc05g0000870' => 'sci', 'Sc05g0000890' => 'sci', 'Sc13g0005000' => 'sci', 'Sc13g0005030' => 'sci', 'Sc19g0003790' => 'sci', 'Sc19g0003800' => 'sci', 'Sed0003467' => 'sed', 'Sed0009355' => 'sed', 'Sed0009894' => 'sed', 'Sed0011972' => 'sed', 'Sed0021483' => 'sed', 'Sed0021750' => 'sed', 'Sed0026279' => 'sed', 'SEGI_05312' => 'sgi', 'SEGI_10112' => 'sgi', 'SEGI_15835' => 'sgi', 'SEGI_30386' => 'sgi', 'SEGI_34122' => 'sgi', 'SEGI_35063' => 'sgi', 'SGA_v2.0_scaffold101G29794' => 'sas', 'SGA_v2.0_scaffold1G00573' => 'sas', 'SGA_v2.0_scaffold79G25637' => 'sas', 'SGA_v2.0_scaffold88G27283' => 'sas', 'SGA_v2.0_scaffold88G27285' => 'sas', 'SGA_v2.0_scaffold88G27331' => 'sas', 'SHI09937' => 'shi', 'SMO119G0302' => 'smo', 'SMO137G0231' => 'smo', 'SMO367G1151' => 'smo', 'Solyc02g082000.3' => 'sly', 'Solyc06g031670.3' => 'sly', 'Solyc06g053810.3' => 'sly', 'Solyc07g025457.1' => 'sly', 'Solyc08g059740.1' => 'sly', 'Solyc08g059750.3' => 'sly', 'Solyc09g083370.3' => 'sly', 'Solyc12g038950.3' => 'sly', 'Sopen02g026630' => 'spe', 'Sopen06g018930' => 'spe', 'Sopen06g018940' => 'spe', 'Sopen08g009460' => 'spe', 'Sopen09g032290' => 'spe', 'Sp1g03080' => 'spa', 'Sp1g03090' => 'spa', 'Sp1g05480' => 'spa', 'Sp2g07860' => 'spa', 'Sp2g08430' => 'spa', 'Sp2g08440' => 'spa', 'Sp2g26200' => 'spa', 'Sp4g13170' => 'spa', 'Sp6g33840' => 'spa', 'SpUn1204_0010' => 'spa', 'TAR365G0908' => 'tar', 'TAR381G1270' => 'tar', 'TAR381G1651' => 'tar', 'TAR625G1131' => 'tar', 'TAR633G0962' => 'tar', 'TAR633G1729' => 'tar', 'TAR633G1864' => 'tar', 'TAR636G0221' => 'tar', 'TAR636G0314' => 'tar', 'TAR636G3202' => 'tar', 'THA.LOC104800805' => 'tha', 'THA.LOC104801096' => 'tha', 'THA.LOC104801555' => 'tha', 'THA.LOC104808491' => 'tha', 'THA.LOC104808595' => 'tha', 'THA.LOC104815985' => 'tha', 'THA.LOC104822250' => 'tha', 'THA.LOC104826071' => 'tha', 'Thecc.01G265200' => 'tca', 'Thecc.01G265300' => 'tca', 'Thecc.01G265700' => 'tca', 'Thecc.03G109100' => 'tca', 'Thecc.04G245900' => 'tca', 'Thecc.04G246000' => 'tca', 'Thhalv10003334m.g' => 'esa', 'Thhalv10005508m.g' => 'esa', 'Thhalv10005643m.g' => 'esa', 'Thhalv10007316m.g' => 'esa', 'Thhalv10009006m.g' => 'esa', 'Thhalv10009309m.g' => 'esa', 'Thhalv10014917m.g' => 'esa', 'Thhalv10014919m.g' => 'esa', 'Thhalv10015393m.g' => 'esa', 'Thhalv10016515m.g' => 'esa', 'Thhalv10029242m.g' => 'esa', 'TPR.G16654' => 'tpr', 'TPR.G20589' => 'tpr', 'TPR.G23029' => 'tpr', 'TPR.G27731' => 'tpr', 'TPR.G28889' => 'tpr', 'TPR.G28899' => 'tpr', 'TPR.G30846' => 'tpr', 'TPR.G5452' => 'tpr', 'TPR.G5713' => 'tpr', 'TPR.G9046' => 'tpr', 'TPR.G9061' => 'tpr', 'TWI09G1075' => 'twi', 'TWI12G0806' => 'twi', 'TWI18G0108' => 'twi', 'TWI53G1361' => 'twi', 'TWI73G0185' => 'twi', 'TWI73G0427' => 'twi', 'unitig_37.g12001' => 'ugi', 'unitig_747.g21660' => 'ugi', 'unitig_748.g7232' => 'ugi', 'unitig_748.g7315' => 'ugi', 'unitig_85.g27262' => 'ugi', 'unitig_92.g28220' => 'ugi', 'vmacro02632' => 'vma', 'vmacro08410' => 'vma', 'vmacro08411' => 'vma', 'vmacro15407' => 'vma', 'VMungo0251G3619' => 'vmu', 'VMungo0720G1204' => 'vmu', 'VMungo0720G1918' => 'vmu', 'VMungo0720G2387' => 'vmu', 'VMungo0720G2961' => 'vmu', 'VMungo1215G2154' => 'vmu', 'VMungo1383G2411' => 'vmu', 'Zm00001eb051130' => 'zma', 'Zm00001eb116830' => 'zma', 'Zm00001eb116850' => 'zma', 'Zm00001eb151740' => 'zma', 'Zm00001eb292360' => 'zma', 'Zm00001eb301640' => 'zma' ) $gf_id = 'HOM05D000856' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000856' ) $data_identifier = 'HOM05D000856' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 13, 'ath' => (int) 10, 'atr' => (int) 1, 'acertr' => (int) 8, 'cqu' => (int) 6, 'bca' => (int) 21, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 11, 'car' => (int) 9, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 8, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 5, 'fan' => (int) 16, 'fve' => (int) 6, 'gma' => (int) 11, 'ghi' => (int) 19, 'gra' => (int) 9, 'vvi' => (int) 7, 'han' => (int) 17, 'cav' => (int) 5, 'hma' => (int) 2, 'vpl' => (int) 2, 'sun' => (int) 7, 'lal' => (int) 9, 'lja' => (int) 5, 'lonja' => (int) 9, 'lsa' => (int) 5, 'mes' => (int) 8, 'mpo' => (int) 3, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 10, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 15, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 9, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 9, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 6, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 5, 'spa' => (int) 10, 'tar' => (int) 10, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 11, 'tpr' => (int) 11, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 4, 'vmu' => (int) 7, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb301640' $species_info = array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ) $local_species = 'ach' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000856', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p00010' => 'bna', 'A03p04160' => 'bna', 'A03p17160' => 'bna', 'A04p23370' => 'bna', 'A05p14860' => 'bna', 'A08p37020' => 'bna', 'A09p08050' => 'bna', 'A09p66800' => 'bna', 'A09p67940' => 'bna', 'A10p02680' => 'bna', 'A10p05320' => 'bna', 'Aa31LG1G20560' => 'aar', 'Aa31LG1G20610' => 'aar', 'Aa31LG1G7810' => 'aar', 'Aa31LG5G3590' => 'aar', 'Aa31LG5G6140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3819' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4683' => 'aag', 'Actinidia04480' => 'ach', 'Actinidia05466' => 'ach', 'Actinidia08445' => 'ach', 'Actinidia21170' => 'ach', 'Actinidia24812' => 'ach', 'Actinidia24951' => 'ach', 'Actinidia40088' => 'ach', 'Ah.02g111660' => 'amhyb', 'Ah.11g048900' => 'amhyb', 'Ah.11g049910' => 'amhyb', 'AL1G13870' => 'aly', 'AL1G13880' => 'aly', 'AL1G16760' => 'aly', 'AL390U10020' => 'aly', 'AL4G25520' => 'aly', 'AL6G19890' => 'aly', 'AL6G19900' => 'aly', 'AL6G19910' => 'aly', 'AL8G40100' => 'aly', 'Aqoxy2G03562' => 'aox', 'Aqoxy5G00316' => 'aox', 'Aqoxy5G00926' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1628KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1H403S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2FU6SJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.882I6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8YRY2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YN1SN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AF70II' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZA8L1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F916KL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHRD8H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KTZ8QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S22EMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8M29T' => 'arhy', 'AT1G04270' => 'ath', 'AT1G04280' => 'ath', 'AT1G06750' => 'ath', 'AT1G33850' => 'ath', 'AT2G30630' => 'ath', 'AT5G09490' => 'ath', 'AT5G09500' => 'ath', 'AT5G09510' => 'ath', 'AT5G43640' => 'ath', 'AT5G63070' => 'ath', 'ATR0605G315' => 'atr', 'Atru.chr11.175' => 'acertr', 'Atru.chr11.653' => 'acertr', 'Atru.chr3.1616' => 'acertr', 'Atru.chr4.2230' => 'acertr', 'Atru.chr4.2232' => 'acertr', 'Atru.chr5.1598' => 'acertr', 'Atru.chr5.1600' => 'acertr', 'Atru.chr5.2188' => 'acertr', 'AUR62008326' => 'cqu', 'AUR62011922' => 'cqu', 'AUR62011924' => 'cqu', 'AUR62021771' => 'cqu', 'AUR62032237' => 'cqu', 'AUR62032240' => 'cqu', 'BcaB01g05572' => 'bca', 'BcaB02g10337' => 'bca', 'BcaB04g19944' => 'bca', 'BcaB05g21548' => 'bca', 'BcaB05g21549' => 'bca', 'BcaB05g23227' => 'bca', 'BcaB06g26256' => 'bca', 'BcaB06g26257' => 'bca', 'BcaB06g28379' => 'bca', 'BcaC02g11159' => 'bca', 'BcaC03g13258' => 'bca', 'BcaC03g13259' => 'bca', 'BcaC05g24456' => 'bca', 'BcaC05g24457' => 'bca', 'BcaC07g36922' => 'bca', 'BcaC07g36923' => 'bca', 'BcaC07g42050' => 'bca', 'BcaC07g42176' => 'bca', 'BcaC07g42195' => 'bca', 'BcaC07g42196' => 'bca', 'BcaNung06674' => 'bca', 'BolC2t06351H' => 'bol', 'BolC2t06352H' => 'bol', 'BolC3t12993H' => 'bol', 'BolC4t23525H' => 'bol', 'BolC4t27475H' => 'bol', 'BolC5t29025H' => 'bol', 'BolC5t29026H' => 'bol', 'BolC8t46898H' => 'bol', 'BolC8t46899H' => 'bol', 'BolC8t52630H' => 'bol', 'BolC8t52765H' => 'bol', 'BolC9t53824H' => 'bol', 'BraA03t09760Z' => 'bra', 'BraA03t10990Z' => 'bra', 'BraA05t20413Z' => 'bra', 'BraA08t35602Z' => 'bra', 'BraA09t36458Z' => 'bra', 'BraA09t42018Z' => 'bra', 'BraA09t42129Z' => 'bra', 'BraA10t42536Z' => 'bra', 'BraA10t42537Z' => 'bra', 'C01p10690' => 'bna', 'C02p03890' => 'bna', 'C02p03900' => 'bna', 'C03p04620' => 'bna', 'C04p19870' => 'bna', 'C04p59670' => 'bna', 'C05p02460' => 'bna', 'C05p02470' => 'bna', 'C08p00980' => 'bna', 'C08p00990' => 'bna', 'C08p51030' => 'bna', 'C08p52360' => 'bna', 'C09p09120' => 'bna', 'CAN.G19.15' => 'can', 'CAN.G251.10' => 'can', 'CAN.G251.9' => 'can', 'CAN.G398.24' => 'can', 'CAN.G410.32' => 'can', 'CAN.G881.2' => 'can', 'CANSAT01G3025' => 'cansat', 'CANSAT78G1211' => 'cansat', 'CANSAT78G1218' => 'cansat', 'CANSAT78G1521' => 'cansat', 'CANSAT78G1670' => 'cansat', 'CARHR003600' => 'chi', 'CARHR003610' => 'chi', 'CARHR006290' => 'chi', 'CARHR006430' => 'chi', 'CARHR124110' => 'chi', 'CARHR203870' => 'chi', 'CARHR203880' => 'chi', 'CARHR203890' => 'chi', 'CARHR276880' => 'chi', 'Carub.0001s0346' => 'cru', 'Carub.0001s0347' => 'cru', 'Carub.0001s0607' => 'cru', 'Carub.0003s2768' => 'cru', 'Carub.0003s2769' => 'cru', 'Carub.0004s1178' => 'cru', 'Carub.0006s0806' => 'cru', 'Carub.0006s0807' => 'cru', 'Carub.0006s0808' => 'cru', 'Carub.0008s0501' => 'cru', 'Carub.0008s2379' => 'cru', 'Ca_08655_v3' => 'car', 'Ca_08922_v3' => 'car', 'Ca_08923_v3' => 'car', 'Ca_09119_v3' => 'car', 'Ca_09703_v3' => 'car', 'Ca_09705_v3' => 'car', 'Ca_09835_v3' => 'car', 'Ca_26403_v3' => 'car', 'Ca_30719_v3' => 'car', 'CBR_g17958' => 'cbr', 'CBR_g40516' => 'cbr', 'Cc00_g05350' => 'ccan', 'Cc01_g18690' => 'ccan', 'Cc03_g04830' => 'ccan', 'Cc03_g04850' => 'ccan', 'CDE02G4469' => 'cde', 'CDE06G0883' => 'cde', 'CDE06G1295' => 'cde', 'CDE06G1390' => 'cde', 'CDE07G0584' => 'cde', 'CDE07G1084' => 'cde', 'CDE08G1259' => 'cde', 'Cfa002341' => 'cfa', 'Cfa024337' => 'cfa', 'Ciclev10004749m.g' => 'ccl', 'Ciclev10006127m.g' => 'ccl', 'Ciclev10019720m.g' => 'ccl', 'Ciclev10022652m.g' => 'ccl', 'CiPaw.01G190400' => 'cil', 'CiPaw.01G190500' => 'cil', 'CiPaw.02G116400' => 'cil', 'CiPaw.02G116500' => 'cil', 'CiPaw.04G183000' => 'cil', 'CiPaw.04G183300' => 'cil', 'ClCG05G004610' => 'cla', 'ClCG05G004620' => 'cla', 'ClCG06G006730' => 'cla', 'ClCG06G006740' => 'cla', 'ClCG11G003690' => 'cla', 'COL.COLO4_08276' => 'col', 'COL.COLO4_08277' => 'col', 'COL.COLO4_15787' => 'col', 'COL.COLO4_15789' => 'col', 'Cpa.g.c44815' => 'cpa', 'Cpa.g.sc52.144' => 'cpa', 'Cpa.g.sc58.46' => 'cpa', 'Cpa.g.sc58.47' => 'cpa', 'Cre08.g360900' => 'cre', 'CsaV3_2G013030' => 'csa', 'CsaV3_2G013050' => 'csa', 'CsaV3_2G015620' => 'csa', 'CsaV3_3G012590' => 'csa', 'CsaV3_3G012600' => 'csa', 'CSS0001641' => 'camsi', 'CSS0008310' => 'camsi', 'CSS0013011' => 'camsi', 'CSS0017147' => 'camsi', 'CSS0022970' => 'camsi', 'CSS0025655' => 'camsi', 'CSS0028665' => 'camsi', 'CSS0029117' => 'camsi', 'CSS0032024' => 'camsi', 'CSS0039681' => 'camsi', 'CSS0046516' => 'camsi', 'CSS0050307' => 'camsi', 'DCAR_005871' => 'dca', 'DCAR_007342' => 'dca', 'DCAR_024228' => 'dca', 'DCAR_027277' => 'dca', 'DCAR_030718' => 'dca', 'Dinv20287' => 'din', 'Dinv22461' => 'din', 'Dinv22464' => 'din', 'Dinv29912' => 'din', 'Dinv29913' => 'din', 'Dinv34580' => 'din', 'Dinv34582' => 'din', 'Dinv44632' => 'din', 'Duzib052G0266' => 'dzi', 'Duzib133G0907' => 'dzi', 'Duzib133G1034' => 'dzi', 'Duzib138G0207' => 'dzi', 'Duzib138G0491' => 'dzi', 'Duzib151G0812' => 'dzi', 'Duzib151G1166' => 'dzi', 'Duzib168G0192' => 'dzi', 'Duzib211G0077' => 'dzi', 'Duzib212G0429' => 'dzi', 'Duzib212G0472' => 'dzi', 'ECA233G2617' => 'eca', 'ECA236G4188' => 'eca', 'ECA240G0936' => 'eca', 'ECA240G1129' => 'eca', 'ECA247G0623' => 'eca', 'EL10Ac5g10451' => 'bvu', 'EL10Ac5g10453' => 'bvu', 'EL10Ac5g10894' => 'bvu', 'Eucgr.H00192' => 'egr', 'Eucgr.H00193' => 'egr', 'Eucgr.H00194' => 'egr', 'Eucgr.J01562' => 'egr', 'Eucgr.K03301' => 'egr', 'FAN02G0632' => 'fan', 'FAN05G5378' => 'fan', 'FAN09G3247' => 'fan', 'FAN12G0435' => 'fan', 'FAN12G2426' => 'fan', 'FAN14G1707' => 'fan', 'FAN14G4725' => 'fan', 'FAN15G2071' => 'fan', 'FAN17G3065' => 'fan', 'FAN19G1376' => 'fan', 'FAN20G0354' => 'fan', 'FAN20G2429' => 'fan', 'FAN20G2658' => 'fan', 'FAN24G2343' => 'fan', 'FAN27G2362' => 'fan', 'FAN28G1765' => 'fan', 'FvH4_1g16020' => 'fve', 'FvH4_2g04890' => 'fve', 'FvH4_2g22270' => 'fve', 'FvH4_4g02630' => 'fve', 'FvH4_4g02640' => 'fve', 'FvH4_6g02650' => 'fve', 'Glyma.02G140600' => 'gma', 'Glyma.03G159900' => 'gma', 'Glyma.05G234800' => 'gma', 'Glyma.07G269600' => 'gma', 'Glyma.08G042300' => 'gma', 'Glyma.10G033500' => 'gma', 'Glyma.10G185200' => 'gma', 'Glyma.17G004300' => 'gma', 'Glyma.19G161900' => 'gma', 'Glyma.20G205100' => 'gma', 'Glyma.20G205200' => 'gma', 'Gohir.A01G139101' => 'ghi', 'Gohir.A02G035600' => 'ghi', 'Gohir.A02G117901' => 'ghi', 'Gohir.A07G210100' => 'ghi', 'Gohir.A07G210200' => 'ghi', 'Gohir.A08G061100' => 'ghi', 'Gohir.A09G223000' => 'ghi', 'Gohir.A09G223100' => 'ghi', 'Gohir.A10G113900' => 'ghi', 'Gohir.A10G114000' => 'ghi', 'Gohir.D02G042300' => 'ghi', 'Gohir.D07G216100' => 'ghi', 'Gohir.D07G216200' => 'ghi', 'Gohir.D08G070400' => 'ghi', 'Gohir.D09G225000' => 'ghi', 'Gohir.D09G225100' => 'ghi', 'Gohir.D10G152300' => 'ghi', 'Gohir.D10G153200' => 'ghi', 'Gohir.D11G133701' => 'ghi', 'Gorai.004G074100' => 'gra', 'Gorai.005G046800' => 'gra', 'Gorai.006G246500' => 'gra', 'Gorai.006G246600' => 'gra', 'Gorai.007G142900' => 'gra', 'Gorai.011G171000' => 'gra', 'Gorai.011G171100' => 'gra', 'Gorai.013G104300' => 'gra', 'Gorai.013G104400' => 'gra', 'GSVIVG01000754001' => 'vvi', 'GSVIVG01000756001' => 'vvi', 'GSVIVG01010903001' => 'vvi', 'GSVIVG01017623001' => 'vvi', 'GSVIVG01018113001' => 'vvi', 'GSVIVG01018116001' => 'vvi', 'GSVIVG01018118001' => 'vvi', 'HanXRQChr03g0076211' => 'han', 'HanXRQChr03g0092431' => 'han', 'HanXRQChr03g0092441' => 'han', 'HanXRQChr03g0092591' => 'han', 'HanXRQChr03g0092671' => 'han', 'HanXRQChr03g0092681' => 'han', 'HanXRQChr03g0092691' => 'han', 'HanXRQChr03g0092701' => 'han', 'HanXRQChr03g0092721' => 'han', 'HanXRQChr03g0092731' => 'han', 'HanXRQChr04g0113681' => 'han', 'HanXRQChr10g0281371' => 'han', 'HanXRQChr11g0337141' => 'han', 'HanXRQChr13g0424521' => 'han', 'HanXRQChr13g0424531' => 'han', 'HanXRQChr13g0424541' => 'han', 'HanXRQChr16g0498221' => 'han', 'Haze_04377' => 'cav', 'Haze_11298' => 'cav', 'Haze_24547' => 'cav', 'Haze_24550' => 'cav', 'Haze_26587' => 'cav', 'Hma1.2p1_0650F.1_g195410' => 'hma', 'Hma1.2p1_0893F.1_g233470' => 'hma', 'HPP92_006508' => 'vpl', 'HPP92_024780' => 'vpl', 'Hund02688' => 'sun', 'Hund09380' => 'sun', 'Hund09381' => 'sun', 'Hund09832' => 'sun', 'Hund09833' => 'sun', 'Hund11351' => 'sun', 'Hund11513' => 'sun', 'Lalb_Chr06g0162591' => 'lal', 'Lalb_Chr06g0162601' => 'lal', 'Lalb_Chr06g0169321' => 'lal', 'Lalb_Chr09g0330951' => 'lal', 'Lalb_Chr16g0387631' => 'lal', 'Lalb_Chr21g0306241' => 'lal', 'Lalb_Chr25g0290051' => 'lal', 'Lalb_Chr25g0290061' => 'lal', 'Lalb_Chr25g0290071' => 'lal', 'Lj1g0003876' => 'lja', 'Lj1P1207T36' => 'lonja', 'Lj2C1156G12' => 'lonja', 'Lj3A793G39' => 'lonja', 'Lj3C580G2' => 'lonja', 'Lj3C780G2' => 'lonja', 'Lj3C780T4' => 'lonja', 'Lj3C793G9' => 'lonja', 'Lj4g0012960' => 'lja', 'Lj5g0021252' => 'lja', 'Lj5g0021484' => 'lja', 'Lj5g0024528' => 'lja', 'Lj6A399T12' => 'lonja', 'Lj6A656G65' => 'lonja', 'Lsat_1_v5_gn_3_125500' => 'lsa', 'Lsat_1_v5_gn_3_125540' => 'lsa', 'Lsat_1_v5_gn_5_72701' => 'lsa', 'Lsat_1_v5_gn_8_91560' => 'lsa', 'Lsat_1_v5_gn_9_9640' => 'lsa', 'Manes.01G200600' => 'mes', 'Manes.01G200700' => 'mes', 'Manes.03G168900' => 'mes', 'Manes.03G169000' => 'mes', 'Manes.05G085801' => 'mes', 'Manes.05G086200' => 'mes', 'Manes.15G036700' => 'mes', 'Manes.15G036900' => 'mes', 'Mapoly0004s0172' => 'mpo', 'Mapoly0023s0001' => 'mpo', 'Mapoly0142s0012' => 'mpo', 'MBI01_g32854_MAGBIO' => 'mbi', 'MBI11_g24427_MAGBIO' => 'mbi', 'MBI11_g47319_MAGBIO' => 'mbi', 'MCO01G433' => 'mco', 'MD00G1187800' => 'mdo', 'MD04G1226500' => 'mdo', 'MD05G1203900' => 'mdo', 'MD10G1191100' => 'mdo', 'MD12G1243500' => 'mdo', 'MD13G1207000' => 'mdo', 'MD13G1207100' => 'mdo', 'MD16G1208600' => 'mdo', 'Medtr1g050352' => 'mtr', 'Medtr1g070385' => 'mtr', 'Medtr1g070450' => 'mtr', 'Medtr1g075200' => 'mtr', 'Medtr1g075250' => 'mtr', 'Medtr1g075260' => 'mtr', 'Medtr1g475250' => 'mtr', 'Medtr4g075450' => 'mtr', 'Medtr7g096300' => 'mtr', 'Medtr8g105110' => 'mtr', 'MELO3C006470.2' => 'cme', 'MELO3C006471.2' => 'cme', 'MELO3C020772.2' => 'cme', 'MELO3C026780.2' => 'cme', 'MELO3C026781.2' => 'cme', 'Migut.D00390' => 'egut', 'Migut.G00435' => 'egut', 'Migut.G00436' => 'egut', 'Migut.G00718' => 'egut', 'MSTRG.21891' => 'ama', 'MSTRG.26910' => 'ama', 'MSTRG.4099' => 'ama', 'MSTRG.9925' => 'ama', 'Nitab4.5_0000165g0010' => 'nta', 'Nitab4.5_0000209g0180' => 'nta', 'Nitab4.5_0000244g0440' => 'nta', 'Nitab4.5_0000525g0220' => 'nta', 'Nitab4.5_0001597g0020' => 'nta', 'Nitab4.5_0001878g0040' => 'nta', 'Nitab4.5_0001878g0060' => 'nta', 'Nitab4.5_0002838g0100' => 'nta', 'Nitab4.5_0002838g0120' => 'nta', 'Nitab4.5_0004798g0030' => 'nta', 'Nitab4.5_0005420g0010' => 'nta', 'Nitab4.5_0005507g0010' => 'nta', 'Nitab4.5_0005574g0020' => 'nta', 'Nitab4.5_0005838g0010' => 'nta', 'Nitab4.5_0010580g0020' => 'nta', 'Nn1g02599' => 'nnu', 'Nn1g02608' => 'nnu', 'Nn3g17742' => 'nnu', 'Nn3g19534' => 'nnu', 'Nn3g19535' => 'nnu', 'Oeu008790.1' => 'oeu', 'Oeu008792.1' => 'oeu', 'Oeu032590.1' => 'oeu', 'Oeu035349.1' => 'oeu', 'Oeu049791.1' => 'oeu', 'Os01g0774500' => 'osa', 'Os03g0628800' => 'osa', 'Os03g0798600' => 'osa', 'Os05g0508800' => 'osa', 'Peaxi162Scf00036g02018' => 'pax', 'Peaxi162Scf00578g00032' => 'pax', 'Peaxi162Scf00578g00317' => 'pax', 'Peaxi162Scf00785g00114' => 'pax', 'Peaxi162Scf00813g00119' => 'pax', 'Peaxi162Scf00906g00227' => 'pax', 'PGR004G0875' => 'pgr', 'PGR004G2424' => 'pgr', 'PGR031G1239' => 'pgr', 'PGR031G2474' => 'pgr', 'PGR044G0423' => 'pgr', 'PGSC0003DMG400001128' => 'stu', 'PGSC0003DMG400007336' => 'stu', 'PGSC0003DMG400016318' => 'stu', 'PGSC0003DMG400016319' => 'stu', 'PGSC0003DMG400018074' => 'stu', 'Phvul.001G157700' => 'pvu', 'Phvul.002G148550' => 'pvu', 'Phvul.002G320200' => 'pvu', 'Phvul.003G089200' => 'pvu', 'Phvul.007G126000' => 'pvu', 'Phvul.007G126100' => 'pvu', 'Phvul.007G178000' => 'pvu', 'Phvul.007G178200' => 'pvu', 'Potri.002G043000' => 'ptr', 'Potri.002G043200' => 'ptr', 'Potri.003G123750' => 'ptr', 'Potri.005G055401' => 'ptr', 'Potri.005G219700' => 'ptr', 'Potri.005G220000' => 'ptr', 'Potri.008G161901' => 'ptr', 'Potri.008G162000' => 'ptr', 'Potri.008G162400' => 'ptr', 'Potri.010G076900' => 'ptr', 'Pp3c12_9180' => 'ppa', 'Pp3c13_19770' => 'ppa', 'Pp3c14_22950' => 'ppa', 'Pp3c16_12160' => 'ppa', 'Pp3c27_7820' => 'ppa', 'Pp3c2_3490' => 'ppa', 'Pp3c3_23700' => 'ppa', 'Pp3c3_36520' => 'ppa', 'Pp3c4_15250' => 'ppa', 'PRCOL_00007002' => 'pco', 'Prupe.1G030600' => 'ppe', 'Prupe.1G030700' => 'ppe', 'Prupe.6G345200' => 'ppe', 'Prupe.8G230300' => 'ppe', 'Prupe.8G230500' => 'ppe', 'Psat3g059600' => 'psa', 'Psat5g200920' => 'psa', 'Psat6g056440' => 'psa', 'Psat6g057360' => 'psa', 'Psat6g134120' => 'psa', 'Psat6g134160' => 'psa', 'Psat7g008640' => 'psa', 'Psat7g185240' => 'psa', 'PSO017G1330' => 'pso', 'PSO063G6097' => 'pso', 'PSO170G0835' => 'pso', 'PSO170G2499' => 'pso', 'PSO210G5058' => 'pso', 'PSO210G6154' => 'pso', 'PSO585G0031' => 'pso', 'PSO832G0264' => 'pso', 'PSO832G4288' => 'pso', 'QL03p027355' => 'qlo', 'QL03p027430' => 'qlo', 'QL04p081380' => 'qlo', 'QL06p015642' => 'qlo', 'QL06p015650' => 'qlo', 'QL06p015686' => 'qlo', 'QL12p042927' => 'qlo', 'QL93p1863_0035' => 'qlo', 'RcHm_v2.0_Chr3g0450581' => 'rch', 'RcHm_v2.0_Chr4g0390371' => 'rch', 'RcHm_v2.0_Chr4g0390381' => 'rch', 'RcHm_v2.0_Chr4g0390491' => 'rch', 'RcHm_v2.0_Chr4g0390501' => 'rch', 'RcHm_v2.0_Chr6g0289231' => 'rch', 'Rhsim04G0190400' => 'rsi', 'Rhsim04G0190500' => 'rsi', 'Rhsim04G0190600' => 'rsi', 'Rhsim13G0031400' => 'rsi', 'Rhsim13G0165600' => 'rsi', 'RhsimUnG0114600' => 'rsi', 'RhsimUnG0114700' => 'rsi', 'Sabra02G0034800' => 'sbr', 'Sabra02G0035100' => 'sbr', 'Sabra05G0168600' => 'sbr', 'Sabra05G0168800' => 'sbr', 'Sabra08G0123700' => 'sbr', 'Sabra10G0031900' => 'sbr', 'Sabra13G0039000' => 'sbr', 'SalBow2G0782' => 'sbo', 'SalBow2G1403' => 'sbo', 'SalBow4G0074' => 'sbo', 'SalBow4G2635' => 'sbo', 'SalBow5G3010' => 'sbo', 'Sc05g0000870' => 'sci', 'Sc05g0000890' => 'sci', 'Sc13g0005000' => 'sci', 'Sc13g0005030' => 'sci', 'Sc19g0003790' => 'sci', 'Sc19g0003800' => 'sci', 'Sed0003467' => 'sed', 'Sed0009355' => 'sed', 'Sed0009894' => 'sed', 'Sed0011972' => 'sed', 'Sed0021483' => 'sed', 'Sed0021750' => 'sed', 'Sed0026279' => 'sed', 'SEGI_05312' => 'sgi', 'SEGI_10112' => 'sgi', 'SEGI_15835' => 'sgi', 'SEGI_30386' => 'sgi', 'SEGI_34122' => 'sgi', 'SEGI_35063' => 'sgi', 'SGA_v2.0_scaffold101G29794' => 'sas', 'SGA_v2.0_scaffold1G00573' => 'sas', 'SGA_v2.0_scaffold79G25637' => 'sas', 'SGA_v2.0_scaffold88G27283' => 'sas', 'SGA_v2.0_scaffold88G27285' => 'sas', 'SGA_v2.0_scaffold88G27331' => 'sas', 'SHI09937' => 'shi', 'SMO119G0302' => 'smo', 'SMO137G0231' => 'smo', 'SMO367G1151' => 'smo', 'Solyc02g082000.3' => 'sly', 'Solyc06g031670.3' => 'sly', 'Solyc06g053810.3' => 'sly', 'Solyc07g025457.1' => 'sly', 'Solyc08g059740.1' => 'sly', 'Solyc08g059750.3' => 'sly', 'Solyc09g083370.3' => 'sly', 'Solyc12g038950.3' => 'sly', 'Sopen02g026630' => 'spe', 'Sopen06g018930' => 'spe', 'Sopen06g018940' => 'spe', 'Sopen08g009460' => 'spe', 'Sopen09g032290' => 'spe', 'Sp1g03080' => 'spa', 'Sp1g03090' => 'spa', 'Sp1g05480' => 'spa', 'Sp2g07860' => 'spa', 'Sp2g08430' => 'spa', 'Sp2g08440' => 'spa', 'Sp2g26200' => 'spa', 'Sp4g13170' => 'spa', 'Sp6g33840' => 'spa', 'SpUn1204_0010' => 'spa', 'TAR365G0908' => 'tar', 'TAR381G1270' => 'tar', 'TAR381G1651' => 'tar', 'TAR625G1131' => 'tar', 'TAR633G0962' => 'tar', 'TAR633G1729' => 'tar', 'TAR633G1864' => 'tar', 'TAR636G0221' => 'tar', 'TAR636G0314' => 'tar', 'TAR636G3202' => 'tar', 'THA.LOC104800805' => 'tha', 'THA.LOC104801096' => 'tha', 'THA.LOC104801555' => 'tha', 'THA.LOC104808491' => 'tha', 'THA.LOC104808595' => 'tha', 'THA.LOC104815985' => 'tha', 'THA.LOC104822250' => 'tha', 'THA.LOC104826071' => 'tha', 'Thecc.01G265200' => 'tca', 'Thecc.01G265300' => 'tca', 'Thecc.01G265700' => 'tca', 'Thecc.03G109100' => 'tca', 'Thecc.04G245900' => 'tca', 'Thecc.04G246000' => 'tca', 'Thhalv10003334m.g' => 'esa', 'Thhalv10005508m.g' => 'esa', 'Thhalv10005643m.g' => 'esa', 'Thhalv10007316m.g' => 'esa', 'Thhalv10009006m.g' => 'esa', 'Thhalv10009309m.g' => 'esa', 'Thhalv10014917m.g' => 'esa', 'Thhalv10014919m.g' => 'esa', 'Thhalv10015393m.g' => 'esa', 'Thhalv10016515m.g' => 'esa', 'Thhalv10029242m.g' => 'esa', 'TPR.G16654' => 'tpr', 'TPR.G20589' => 'tpr', 'TPR.G23029' => 'tpr', 'TPR.G27731' => 'tpr', 'TPR.G28889' => 'tpr', 'TPR.G28899' => 'tpr', 'TPR.G30846' => 'tpr', 'TPR.G5452' => 'tpr', 'TPR.G5713' => 'tpr', 'TPR.G9046' => 'tpr', 'TPR.G9061' => 'tpr', 'TWI09G1075' => 'twi', 'TWI12G0806' => 'twi', 'TWI18G0108' => 'twi', 'TWI53G1361' => 'twi', 'TWI73G0185' => 'twi', 'TWI73G0427' => 'twi', 'unitig_37.g12001' => 'ugi', 'unitig_747.g21660' => 'ugi', 'unitig_748.g7232' => 'ugi', 'unitig_748.g7315' => 'ugi', 'unitig_85.g27262' => 'ugi', 'unitig_92.g28220' => 'ugi', 'vmacro02632' => 'vma', 'vmacro08410' => 'vma', 'vmacro08411' => 'vma', 'vmacro15407' => 'vma', 'VMungo0251G3619' => 'vmu', 'VMungo0720G1204' => 'vmu', 'VMungo0720G1918' => 'vmu', 'VMungo0720G2387' => 'vmu', 'VMungo0720G2961' => 'vmu', 'VMungo1215G2154' => 'vmu', 'VMungo1383G2411' => 'vmu', 'Zm00001eb051130' => 'zma', 'Zm00001eb116830' => 'zma', 'Zm00001eb116850' => 'zma', 'Zm00001eb151740' => 'zma', 'Zm00001eb292360' => 'zma', 'Zm00001eb301640' => 'zma' ), 'gf_id' => 'HOM05D000856', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000856' ), 'data_identifier' => 'HOM05D000856', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000856', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p00010' => 'bna', 'A03p04160' => 'bna', 'A03p17160' => 'bna', 'A04p23370' => 'bna', 'A05p14860' => 'bna', 'A08p37020' => 'bna', 'A09p08050' => 'bna', 'A09p66800' => 'bna', 'A09p67940' => 'bna', 'A10p02680' => 'bna', 'A10p05320' => 'bna', 'Aa31LG1G20560' => 'aar', 'Aa31LG1G20610' => 'aar', 'Aa31LG1G7810' => 'aar', 'Aa31LG5G3590' => 'aar', 'Aa31LG5G6140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3819' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4683' => 'aag', 'Actinidia04480' => 'ach', 'Actinidia05466' => 'ach', 'Actinidia08445' => 'ach', 'Actinidia21170' => 'ach', 'Actinidia24812' => 'ach', 'Actinidia24951' => 'ach', 'Actinidia40088' => 'ach', 'Ah.02g111660' => 'amhyb', 'Ah.11g048900' => 'amhyb', 'Ah.11g049910' => 'amhyb', 'AL1G13870' => 'aly', 'AL1G13880' => 'aly', 'AL1G16760' => 'aly', 'AL390U10020' => 'aly', 'AL4G25520' => 'aly', 'AL6G19890' => 'aly', 'AL6G19900' => 'aly', 'AL6G19910' => 'aly', 'AL8G40100' => 'aly', 'Aqoxy2G03562' => 'aox', 'Aqoxy5G00316' => 'aox', 'Aqoxy5G00926' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1628KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1H403S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2FU6SJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.882I6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8YRY2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YN1SN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AF70II' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZA8L1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F916KL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHRD8H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KTZ8QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S22EMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8M29T' => 'arhy', 'AT1G04270' => 'ath', 'AT1G04280' => 'ath', 'AT1G06750' => 'ath', 'AT1G33850' => 'ath', 'AT2G30630' => 'ath', 'AT5G09490' => 'ath', 'AT5G09500' => 'ath', 'AT5G09510' => 'ath', 'AT5G43640' => 'ath', 'AT5G63070' => 'ath', 'ATR0605G315' => 'atr', 'Atru.chr11.175' => 'acertr', 'Atru.chr11.653' => 'acertr', 'Atru.chr3.1616' => 'acertr', 'Atru.chr4.2230' => 'acertr', 'Atru.chr4.2232' => 'acertr', 'Atru.chr5.1598' => 'acertr', 'Atru.chr5.1600' => 'acertr', 'Atru.chr5.2188' => 'acertr', 'AUR62008326' => 'cqu', 'AUR62011922' => 'cqu', 'AUR62011924' => 'cqu', 'AUR62021771' => 'cqu', 'AUR62032237' => 'cqu', 'AUR62032240' => 'cqu', 'BcaB01g05572' => 'bca', 'BcaB02g10337' => 'bca', 'BcaB04g19944' => 'bca', 'BcaB05g21548' => 'bca', 'BcaB05g21549' => 'bca', 'BcaB05g23227' => 'bca', 'BcaB06g26256' => 'bca', 'BcaB06g26257' => 'bca', 'BcaB06g28379' => 'bca', 'BcaC02g11159' => 'bca', 'BcaC03g13258' => 'bca', 'BcaC03g13259' => 'bca', 'BcaC05g24456' => 'bca', 'BcaC05g24457' => 'bca', 'BcaC07g36922' => 'bca', 'BcaC07g36923' => 'bca', 'BcaC07g42050' => 'bca', 'BcaC07g42176' => 'bca', 'BcaC07g42195' => 'bca', 'BcaC07g42196' => 'bca', 'BcaNung06674' => 'bca', 'BolC2t06351H' => 'bol', 'BolC2t06352H' => 'bol', 'BolC3t12993H' => 'bol', 'BolC4t23525H' => 'bol', 'BolC4t27475H' => 'bol', 'BolC5t29025H' => 'bol', 'BolC5t29026H' => 'bol', 'BolC8t46898H' => 'bol', 'BolC8t46899H' => 'bol', 'BolC8t52630H' => 'bol', 'BolC8t52765H' => 'bol', 'BolC9t53824H' => 'bol', 'BraA03t09760Z' => 'bra', 'BraA03t10990Z' => 'bra', 'BraA05t20413Z' => 'bra', 'BraA08t35602Z' => 'bra', 'BraA09t36458Z' => 'bra', 'BraA09t42018Z' => 'bra', 'BraA09t42129Z' => 'bra', 'BraA10t42536Z' => 'bra', 'BraA10t42537Z' => 'bra', 'C01p10690' => 'bna', 'C02p03890' => 'bna', 'C02p03900' => 'bna', 'C03p04620' => 'bna', 'C04p19870' => 'bna', 'C04p59670' => 'bna', 'C05p02460' => 'bna', 'C05p02470' => 'bna', 'C08p00980' => 'bna', 'C08p00990' => 'bna', 'C08p51030' => 'bna', 'C08p52360' => 'bna', 'C09p09120' => 'bna', 'CAN.G19.15' => 'can', 'CAN.G251.10' => 'can', 'CAN.G251.9' => 'can', 'CAN.G398.24' => 'can', 'CAN.G410.32' => 'can', 'CAN.G881.2' => 'can', 'CANSAT01G3025' => 'cansat', 'CANSAT78G1211' => 'cansat', 'CANSAT78G1218' => 'cansat', 'CANSAT78G1521' => 'cansat', 'CANSAT78G1670' => 'cansat', 'CARHR003600' => 'chi', 'CARHR003610' => 'chi', 'CARHR006290' => 'chi', 'CARHR006430' => 'chi', 'CARHR124110' => 'chi', 'CARHR203870' => 'chi', 'CARHR203880' => 'chi', 'CARHR203890' => 'chi', 'CARHR276880' => 'chi', 'Carub.0001s0346' => 'cru', 'Carub.0001s0347' => 'cru', 'Carub.0001s0607' => 'cru', 'Carub.0003s2768' => 'cru', 'Carub.0003s2769' => 'cru', 'Carub.0004s1178' => 'cru', 'Carub.0006s0806' => 'cru', 'Carub.0006s0807' => 'cru', 'Carub.0006s0808' => 'cru', 'Carub.0008s0501' => 'cru', 'Carub.0008s2379' => 'cru', 'Ca_08655_v3' => 'car', 'Ca_08922_v3' => 'car', 'Ca_08923_v3' => 'car', 'Ca_09119_v3' => 'car', 'Ca_09703_v3' => 'car', 'Ca_09705_v3' => 'car', 'Ca_09835_v3' => 'car', 'Ca_26403_v3' => 'car', 'Ca_30719_v3' => 'car', 'CBR_g17958' => 'cbr', 'CBR_g40516' => 'cbr', 'Cc00_g05350' => 'ccan', 'Cc01_g18690' => 'ccan', 'Cc03_g04830' => 'ccan', 'Cc03_g04850' => 'ccan', 'CDE02G4469' => 'cde', 'CDE06G0883' => 'cde', 'CDE06G1295' => 'cde', 'CDE06G1390' => 'cde', 'CDE07G0584' => 'cde', 'CDE07G1084' => 'cde', 'CDE08G1259' => 'cde', 'Cfa002341' => 'cfa', 'Cfa024337' => 'cfa', 'Ciclev10004749m.g' => 'ccl', 'Ciclev10006127m.g' => 'ccl', 'Ciclev10019720m.g' => 'ccl', 'Ciclev10022652m.g' => 'ccl', 'CiPaw.01G190400' => 'cil', 'CiPaw.01G190500' => 'cil', 'CiPaw.02G116400' => 'cil', 'CiPaw.02G116500' => 'cil', 'CiPaw.04G183000' => 'cil', 'CiPaw.04G183300' => 'cil', 'ClCG05G004610' => 'cla', 'ClCG05G004620' => 'cla', 'ClCG06G006730' => 'cla', 'ClCG06G006740' => 'cla', 'ClCG11G003690' => 'cla', 'COL.COLO4_08276' => 'col', 'COL.COLO4_08277' => 'col', 'COL.COLO4_15787' => 'col', 'COL.COLO4_15789' => 'col', 'Cpa.g.c44815' => 'cpa', 'Cpa.g.sc52.144' => 'cpa', 'Cpa.g.sc58.46' => 'cpa', 'Cpa.g.sc58.47' => 'cpa', 'Cre08.g360900' => 'cre', 'CsaV3_2G013030' => 'csa', 'CsaV3_2G013050' => 'csa', 'CsaV3_2G015620' => 'csa', 'CsaV3_3G012590' => 'csa', 'CsaV3_3G012600' => 'csa', 'CSS0001641' => 'camsi', 'CSS0008310' => 'camsi', 'CSS0013011' => 'camsi', 'CSS0017147' => 'camsi', 'CSS0022970' => 'camsi', 'CSS0025655' => 'camsi', 'CSS0028665' => 'camsi', 'CSS0029117' => 'camsi', 'CSS0032024' => 'camsi', 'CSS0039681' => 'camsi', 'CSS0046516' => 'camsi', 'CSS0050307' => 'camsi', 'DCAR_005871' => 'dca', 'DCAR_007342' => 'dca', 'DCAR_024228' => 'dca', 'DCAR_027277' => 'dca', 'DCAR_030718' => 'dca', 'Dinv20287' => 'din', 'Dinv22461' => 'din', 'Dinv22464' => 'din', 'Dinv29912' => 'din', 'Dinv29913' => 'din', 'Dinv34580' => 'din', 'Dinv34582' => 'din', 'Dinv44632' => 'din', 'Duzib052G0266' => 'dzi', 'Duzib133G0907' => 'dzi', 'Duzib133G1034' => 'dzi', 'Duzib138G0207' => 'dzi', 'Duzib138G0491' => 'dzi', 'Duzib151G0812' => 'dzi', 'Duzib151G1166' => 'dzi', 'Duzib168G0192' => 'dzi', 'Duzib211G0077' => 'dzi', 'Duzib212G0429' => 'dzi', 'Duzib212G0472' => 'dzi', 'ECA233G2617' => 'eca', 'ECA236G4188' => 'eca', 'ECA240G0936' => 'eca', 'ECA240G1129' => 'eca', 'ECA247G0623' => 'eca', 'EL10Ac5g10451' => 'bvu', 'EL10Ac5g10453' => 'bvu', 'EL10Ac5g10894' => 'bvu', 'Eucgr.H00192' => 'egr', 'Eucgr.H00193' => 'egr', 'Eucgr.H00194' => 'egr', 'Eucgr.J01562' => 'egr', 'Eucgr.K03301' => 'egr', 'FAN02G0632' => 'fan', 'FAN05G5378' => 'fan', 'FAN09G3247' => 'fan', 'FAN12G0435' => 'fan', 'FAN12G2426' => 'fan', 'FAN14G1707' => 'fan', 'FAN14G4725' => 'fan', 'FAN15G2071' => 'fan', 'FAN17G3065' => 'fan', 'FAN19G1376' => 'fan', 'FAN20G0354' => 'fan', 'FAN20G2429' => 'fan', 'FAN20G2658' => 'fan', 'FAN24G2343' => 'fan', 'FAN27G2362' => 'fan', 'FAN28G1765' => 'fan', 'FvH4_1g16020' => 'fve', 'FvH4_2g04890' => 'fve', 'FvH4_2g22270' => 'fve', 'FvH4_4g02630' => 'fve', 'FvH4_4g02640' => 'fve', 'FvH4_6g02650' => 'fve', 'Glyma.02G140600' => 'gma', 'Glyma.03G159900' => 'gma', 'Glyma.05G234800' => 'gma', 'Glyma.07G269600' => 'gma', 'Glyma.08G042300' => 'gma', 'Glyma.10G033500' => 'gma', 'Glyma.10G185200' => 'gma', 'Glyma.17G004300' => 'gma', 'Glyma.19G161900' => 'gma', 'Glyma.20G205100' => 'gma', 'Glyma.20G205200' => 'gma', 'Gohir.A01G139101' => 'ghi', 'Gohir.A02G035600' => 'ghi', 'Gohir.A02G117901' => 'ghi', 'Gohir.A07G210100' => 'ghi', 'Gohir.A07G210200' => 'ghi', 'Gohir.A08G061100' => 'ghi', 'Gohir.A09G223000' => 'ghi', 'Gohir.A09G223100' => 'ghi', 'Gohir.A10G113900' => 'ghi', 'Gohir.A10G114000' => 'ghi', 'Gohir.D02G042300' => 'ghi', 'Gohir.D07G216100' => 'ghi', 'Gohir.D07G216200' => 'ghi', 'Gohir.D08G070400' => 'ghi', 'Gohir.D09G225000' => 'ghi', 'Gohir.D09G225100' => 'ghi', 'Gohir.D10G152300' => 'ghi', 'Gohir.D10G153200' => 'ghi', 'Gohir.D11G133701' => 'ghi', 'Gorai.004G074100' => 'gra', 'Gorai.005G046800' => 'gra', 'Gorai.006G246500' => 'gra', 'Gorai.006G246600' => 'gra', 'Gorai.007G142900' => 'gra', 'Gorai.011G171000' => 'gra', 'Gorai.011G171100' => 'gra', 'Gorai.013G104300' => 'gra', 'Gorai.013G104400' => 'gra', 'GSVIVG01000754001' => 'vvi', 'GSVIVG01000756001' => 'vvi', 'GSVIVG01010903001' => 'vvi', 'GSVIVG01017623001' => 'vvi', 'GSVIVG01018113001' => 'vvi', 'GSVIVG01018116001' => 'vvi', 'GSVIVG01018118001' => 'vvi', 'HanXRQChr03g0076211' => 'han', 'HanXRQChr03g0092431' => 'han', 'HanXRQChr03g0092441' => 'han', 'HanXRQChr03g0092591' => 'han', 'HanXRQChr03g0092671' => 'han', 'HanXRQChr03g0092681' => 'han', 'HanXRQChr03g0092691' => 'han', 'HanXRQChr03g0092701' => 'han', 'HanXRQChr03g0092721' => 'han', 'HanXRQChr03g0092731' => 'han', 'HanXRQChr04g0113681' => 'han', 'HanXRQChr10g0281371' => 'han', 'HanXRQChr11g0337141' => 'han', 'HanXRQChr13g0424521' => 'han', 'HanXRQChr13g0424531' => 'han', 'HanXRQChr13g0424541' => 'han', 'HanXRQChr16g0498221' => 'han', 'Haze_04377' => 'cav', 'Haze_11298' => 'cav', 'Haze_24547' => 'cav', 'Haze_24550' => 'cav', 'Haze_26587' => 'cav', 'Hma1.2p1_0650F.1_g195410' => 'hma', 'Hma1.2p1_0893F.1_g233470' => 'hma', 'HPP92_006508' => 'vpl', 'HPP92_024780' => 'vpl', 'Hund02688' => 'sun', 'Hund09380' => 'sun', 'Hund09381' => 'sun', 'Hund09832' => 'sun', 'Hund09833' => 'sun', 'Hund11351' => 'sun', 'Hund11513' => 'sun', 'Lalb_Chr06g0162591' => 'lal', 'Lalb_Chr06g0162601' => 'lal', 'Lalb_Chr06g0169321' => 'lal', 'Lalb_Chr09g0330951' => 'lal', 'Lalb_Chr16g0387631' => 'lal', 'Lalb_Chr21g0306241' => 'lal', 'Lalb_Chr25g0290051' => 'lal', 'Lalb_Chr25g0290061' => 'lal', 'Lalb_Chr25g0290071' => 'lal', 'Lj1g0003876' => 'lja', 'Lj1P1207T36' => 'lonja', 'Lj2C1156G12' => 'lonja', 'Lj3A793G39' => 'lonja', 'Lj3C580G2' => 'lonja', 'Lj3C780G2' => 'lonja', 'Lj3C780T4' => 'lonja', 'Lj3C793G9' => 'lonja', 'Lj4g0012960' => 'lja', 'Lj5g0021252' => 'lja', 'Lj5g0021484' => 'lja', 'Lj5g0024528' => 'lja', 'Lj6A399T12' => 'lonja', 'Lj6A656G65' => 'lonja', 'Lsat_1_v5_gn_3_125500' => 'lsa', 'Lsat_1_v5_gn_3_125540' => 'lsa', 'Lsat_1_v5_gn_5_72701' => 'lsa', 'Lsat_1_v5_gn_8_91560' => 'lsa', 'Lsat_1_v5_gn_9_9640' => 'lsa', 'Manes.01G200600' => 'mes', 'Manes.01G200700' => 'mes', 'Manes.03G168900' => 'mes', 'Manes.03G169000' => 'mes', 'Manes.05G085801' => 'mes', 'Manes.05G086200' => 'mes', 'Manes.15G036700' => 'mes', 'Manes.15G036900' => 'mes', 'Mapoly0004s0172' => 'mpo', 'Mapoly0023s0001' => 'mpo', 'Mapoly0142s0012' => 'mpo', 'MBI01_g32854_MAGBIO' => 'mbi', 'MBI11_g24427_MAGBIO' => 'mbi', 'MBI11_g47319_MAGBIO' => 'mbi', 'MCO01G433' => 'mco', 'MD00G1187800' => 'mdo', 'MD04G1226500' => 'mdo', 'MD05G1203900' => 'mdo', 'MD10G1191100' => 'mdo', 'MD12G1243500' => 'mdo', 'MD13G1207000' => 'mdo', 'MD13G1207100' => 'mdo', 'MD16G1208600' => 'mdo', 'Medtr1g050352' => 'mtr', 'Medtr1g070385' => 'mtr', 'Medtr1g070450' => 'mtr', 'Medtr1g075200' => 'mtr', 'Medtr1g075250' => 'mtr', 'Medtr1g075260' => 'mtr', 'Medtr1g475250' => 'mtr', 'Medtr4g075450' => 'mtr', 'Medtr7g096300' => 'mtr', 'Medtr8g105110' => 'mtr', 'MELO3C006470.2' => 'cme', 'MELO3C006471.2' => 'cme', 'MELO3C020772.2' => 'cme', 'MELO3C026780.2' => 'cme', 'MELO3C026781.2' => 'cme', 'Migut.D00390' => 'egut', 'Migut.G00435' => 'egut', 'Migut.G00436' => 'egut', 'Migut.G00718' => 'egut', 'MSTRG.21891' => 'ama', 'MSTRG.26910' => 'ama', 'MSTRG.4099' => 'ama', 'MSTRG.9925' => 'ama', 'Nitab4.5_0000165g0010' => 'nta', 'Nitab4.5_0000209g0180' => 'nta', 'Nitab4.5_0000244g0440' => 'nta', 'Nitab4.5_0000525g0220' => 'nta', 'Nitab4.5_0001597g0020' => 'nta', 'Nitab4.5_0001878g0040' => 'nta', 'Nitab4.5_0001878g0060' => 'nta', 'Nitab4.5_0002838g0100' => 'nta', 'Nitab4.5_0002838g0120' => 'nta', 'Nitab4.5_0004798g0030' => 'nta', 'Nitab4.5_0005420g0010' => 'nta', 'Nitab4.5_0005507g0010' => 'nta', 'Nitab4.5_0005574g0020' => 'nta', 'Nitab4.5_0005838g0010' => 'nta', 'Nitab4.5_0010580g0020' => 'nta', 'Nn1g02599' => 'nnu', 'Nn1g02608' => 'nnu', 'Nn3g17742' => 'nnu', 'Nn3g19534' => 'nnu', 'Nn3g19535' => 'nnu', 'Oeu008790.1' => 'oeu', 'Oeu008792.1' => 'oeu', 'Oeu032590.1' => 'oeu', 'Oeu035349.1' => 'oeu', 'Oeu049791.1' => 'oeu', 'Os01g0774500' => 'osa', 'Os03g0628800' => 'osa', 'Os03g0798600' => 'osa', 'Os05g0508800' => 'osa', 'Peaxi162Scf00036g02018' => 'pax', 'Peaxi162Scf00578g00032' => 'pax', 'Peaxi162Scf00578g00317' => 'pax', 'Peaxi162Scf00785g00114' => 'pax', 'Peaxi162Scf00813g00119' => 'pax', 'Peaxi162Scf00906g00227' => 'pax', 'PGR004G0875' => 'pgr', 'PGR004G2424' => 'pgr', 'PGR031G1239' => 'pgr', 'PGR031G2474' => 'pgr', 'PGR044G0423' => 'pgr', 'PGSC0003DMG400001128' => 'stu', 'PGSC0003DMG400007336' => 'stu', 'PGSC0003DMG400016318' => 'stu', 'PGSC0003DMG400016319' => 'stu', 'PGSC0003DMG400018074' => 'stu', 'Phvul.001G157700' => 'pvu', 'Phvul.002G148550' => 'pvu', 'Phvul.002G320200' => 'pvu', 'Phvul.003G089200' => 'pvu', 'Phvul.007G126000' => 'pvu', 'Phvul.007G126100' => 'pvu', 'Phvul.007G178000' => 'pvu', 'Phvul.007G178200' => 'pvu', 'Potri.002G043000' => 'ptr', 'Potri.002G043200' => 'ptr', 'Potri.003G123750' => 'ptr', 'Potri.005G055401' => 'ptr', 'Potri.005G219700' => 'ptr', 'Potri.005G220000' => 'ptr', 'Potri.008G161901' => 'ptr', 'Potri.008G162000' => 'ptr', 'Potri.008G162400' => 'ptr', 'Potri.010G076900' => 'ptr', 'Pp3c12_9180' => 'ppa', 'Pp3c13_19770' => 'ppa', 'Pp3c14_22950' => 'ppa', 'Pp3c16_12160' => 'ppa', 'Pp3c27_7820' => 'ppa', 'Pp3c2_3490' => 'ppa', 'Pp3c3_23700' => 'ppa', 'Pp3c3_36520' => 'ppa', 'Pp3c4_15250' => 'ppa', 'PRCOL_00007002' => 'pco', 'Prupe.1G030600' => 'ppe', 'Prupe.1G030700' => 'ppe', 'Prupe.6G345200' => 'ppe', 'Prupe.8G230300' => 'ppe', 'Prupe.8G230500' => 'ppe', 'Psat3g059600' => 'psa', 'Psat5g200920' => 'psa', 'Psat6g056440' => 'psa', 'Psat6g057360' => 'psa', 'Psat6g134120' => 'psa', 'Psat6g134160' => 'psa', 'Psat7g008640' => 'psa', 'Psat7g185240' => 'psa', 'PSO017G1330' => 'pso', 'PSO063G6097' => 'pso', 'PSO170G0835' => 'pso', 'PSO170G2499' => 'pso', 'PSO210G5058' => 'pso', 'PSO210G6154' => 'pso', 'PSO585G0031' => 'pso', 'PSO832G0264' => 'pso', 'PSO832G4288' => 'pso', 'QL03p027355' => 'qlo', 'QL03p027430' => 'qlo', 'QL04p081380' => 'qlo', 'QL06p015642' => 'qlo', 'QL06p015650' => 'qlo', 'QL06p015686' => 'qlo', 'QL12p042927' => 'qlo', 'QL93p1863_0035' => 'qlo', 'RcHm_v2.0_Chr3g0450581' => 'rch', 'RcHm_v2.0_Chr4g0390371' => 'rch', 'RcHm_v2.0_Chr4g0390381' => 'rch', 'RcHm_v2.0_Chr4g0390491' => 'rch', 'RcHm_v2.0_Chr4g0390501' => 'rch', 'RcHm_v2.0_Chr6g0289231' => 'rch', 'Rhsim04G0190400' => 'rsi', 'Rhsim04G0190500' => 'rsi', 'Rhsim04G0190600' => 'rsi', 'Rhsim13G0031400' => 'rsi', 'Rhsim13G0165600' => 'rsi', 'RhsimUnG0114600' => 'rsi', 'RhsimUnG0114700' => 'rsi', 'Sabra02G0034800' => 'sbr', 'Sabra02G0035100' => 'sbr', 'Sabra05G0168600' => 'sbr', 'Sabra05G0168800' => 'sbr', 'Sabra08G0123700' => 'sbr', 'Sabra10G0031900' => 'sbr', 'Sabra13G0039000' => 'sbr', 'SalBow2G0782' => 'sbo', 'SalBow2G1403' => 'sbo', 'SalBow4G0074' => 'sbo', 'SalBow4G2635' => 'sbo', 'SalBow5G3010' => 'sbo', 'Sc05g0000870' => 'sci', 'Sc05g0000890' => 'sci', 'Sc13g0005000' => 'sci', 'Sc13g0005030' => 'sci', 'Sc19g0003790' => 'sci', 'Sc19g0003800' => 'sci', 'Sed0003467' => 'sed', 'Sed0009355' => 'sed', 'Sed0009894' => 'sed', 'Sed0011972' => 'sed', 'Sed0021483' => 'sed', 'Sed0021750' => 'sed', 'Sed0026279' => 'sed', 'SEGI_05312' => 'sgi', 'SEGI_10112' => 'sgi', 'SEGI_15835' => 'sgi', 'SEGI_30386' => 'sgi', 'SEGI_34122' => 'sgi', 'SEGI_35063' => 'sgi', 'SGA_v2.0_scaffold101G29794' => 'sas', 'SGA_v2.0_scaffold1G00573' => 'sas', 'SGA_v2.0_scaffold79G25637' => 'sas', 'SGA_v2.0_scaffold88G27283' => 'sas', 'SGA_v2.0_scaffold88G27285' => 'sas', 'SGA_v2.0_scaffold88G27331' => 'sas', 'SHI09937' => 'shi', 'SMO119G0302' => 'smo', 'SMO137G0231' => 'smo', 'SMO367G1151' => 'smo', 'Solyc02g082000.3' => 'sly', 'Solyc06g031670.3' => 'sly', 'Solyc06g053810.3' => 'sly', 'Solyc07g025457.1' => 'sly', 'Solyc08g059740.1' => 'sly', 'Solyc08g059750.3' => 'sly', 'Solyc09g083370.3' => 'sly', 'Solyc12g038950.3' => 'sly', 'Sopen02g026630' => 'spe', 'Sopen06g018930' => 'spe', 'Sopen06g018940' => 'spe', 'Sopen08g009460' => 'spe', 'Sopen09g032290' => 'spe', 'Sp1g03080' => 'spa', 'Sp1g03090' => 'spa', 'Sp1g05480' => 'spa', 'Sp2g07860' => 'spa', 'Sp2g08430' => 'spa', 'Sp2g08440' => 'spa', 'Sp2g26200' => 'spa', 'Sp4g13170' => 'spa', 'Sp6g33840' => 'spa', 'SpUn1204_0010' => 'spa', 'TAR365G0908' => 'tar', 'TAR381G1270' => 'tar', 'TAR381G1651' => 'tar', 'TAR625G1131' => 'tar', 'TAR633G0962' => 'tar', 'TAR633G1729' => 'tar', 'TAR633G1864' => 'tar', 'TAR636G0221' => 'tar', 'TAR636G0314' => 'tar', 'TAR636G3202' => 'tar', 'THA.LOC104800805' => 'tha', 'THA.LOC104801096' => 'tha', 'THA.LOC104801555' => 'tha', 'THA.LOC104808491' => 'tha', 'THA.LOC104808595' => 'tha', 'THA.LOC104815985' => 'tha', 'THA.LOC104822250' => 'tha', 'THA.LOC104826071' => 'tha', 'Thecc.01G265200' => 'tca', 'Thecc.01G265300' => 'tca', 'Thecc.01G265700' => 'tca', 'Thecc.03G109100' => 'tca', 'Thecc.04G245900' => 'tca', 'Thecc.04G246000' => 'tca', 'Thhalv10003334m.g' => 'esa', 'Thhalv10005508m.g' => 'esa', 'Thhalv10005643m.g' => 'esa', 'Thhalv10007316m.g' => 'esa', 'Thhalv10009006m.g' => 'esa', 'Thhalv10009309m.g' => 'esa', 'Thhalv10014917m.g' => 'esa', 'Thhalv10014919m.g' => 'esa', 'Thhalv10015393m.g' => 'esa', 'Thhalv10016515m.g' => 'esa', 'Thhalv10029242m.g' => 'esa', 'TPR.G16654' => 'tpr', 'TPR.G20589' => 'tpr', 'TPR.G23029' => 'tpr', 'TPR.G27731' => 'tpr', 'TPR.G28889' => 'tpr', 'TPR.G28899' => 'tpr', 'TPR.G30846' => 'tpr', 'TPR.G5452' => 'tpr', 'TPR.G5713' => 'tpr', 'TPR.G9046' => 'tpr', 'TPR.G9061' => 'tpr', 'TWI09G1075' => 'twi', 'TWI12G0806' => 'twi', 'TWI18G0108' => 'twi', 'TWI53G1361' => 'twi', 'TWI73G0185' => 'twi', 'TWI73G0427' => 'twi', 'unitig_37.g12001' => 'ugi', 'unitig_747.g21660' => 'ugi', 'unitig_748.g7232' => 'ugi', 'unitig_748.g7315' => 'ugi', 'unitig_85.g27262' => 'ugi', 'unitig_92.g28220' => 'ugi', 'vmacro02632' => 'vma', 'vmacro08410' => 'vma', 'vmacro08411' => 'vma', 'vmacro15407' => 'vma', 'VMungo0251G3619' => 'vmu', 'VMungo0720G1204' => 'vmu', 'VMungo0720G1918' => 'vmu', 'VMungo0720G2387' => 'vmu', 'VMungo0720G2961' => 'vmu', 'VMungo1215G2154' => 'vmu', 'VMungo1383G2411' => 'vmu', 'Zm00001eb051130' => 'zma', 'Zm00001eb116830' => 'zma', 'Zm00001eb116850' => 'zma', 'Zm00001eb151740' => 'zma', 'Zm00001eb292360' => 'zma', 'Zm00001eb301640' => 'zma' ) $gf_id = 'HOM05D000856' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000856' ) $data_identifier = 'HOM05D000856' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 13, 'ath' => (int) 10, 'atr' => (int) 1, 'acertr' => (int) 8, 'cqu' => (int) 6, 'bca' => (int) 21, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 11, 'car' => (int) 9, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 8, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 5, 'fan' => (int) 16, 'fve' => (int) 6, 'gma' => (int) 11, 'ghi' => (int) 19, 'gra' => (int) 9, 'vvi' => (int) 7, 'han' => (int) 17, 'cav' => (int) 5, 'hma' => (int) 2, 'vpl' => (int) 2, 'sun' => (int) 7, 'lal' => (int) 9, 'lja' => (int) 5, 'lonja' => (int) 9, 'lsa' => (int) 5, 'mes' => (int) 8, 'mpo' => (int) 3, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 10, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 15, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 9, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 9, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 6, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 5, 'spa' => (int) 10, 'tar' => (int) 10, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 11, 'tpr' => (int) 11, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 4, 'vmu' => (int) 7, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb301640' $species_info = array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ) $local_species = 'aar' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000856', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p00010' => 'bna', 'A03p04160' => 'bna', 'A03p17160' => 'bna', 'A04p23370' => 'bna', 'A05p14860' => 'bna', 'A08p37020' => 'bna', 'A09p08050' => 'bna', 'A09p66800' => 'bna', 'A09p67940' => 'bna', 'A10p02680' => 'bna', 'A10p05320' => 'bna', 'Aa31LG1G20560' => 'aar', 'Aa31LG1G20610' => 'aar', 'Aa31LG1G7810' => 'aar', 'Aa31LG5G3590' => 'aar', 'Aa31LG5G6140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3819' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4683' => 'aag', 'Actinidia04480' => 'ach', 'Actinidia05466' => 'ach', 'Actinidia08445' => 'ach', 'Actinidia21170' => 'ach', 'Actinidia24812' => 'ach', 'Actinidia24951' => 'ach', 'Actinidia40088' => 'ach', 'Ah.02g111660' => 'amhyb', 'Ah.11g048900' => 'amhyb', 'Ah.11g049910' => 'amhyb', 'AL1G13870' => 'aly', 'AL1G13880' => 'aly', 'AL1G16760' => 'aly', 'AL390U10020' => 'aly', 'AL4G25520' => 'aly', 'AL6G19890' => 'aly', 'AL6G19900' => 'aly', 'AL6G19910' => 'aly', 'AL8G40100' => 'aly', 'Aqoxy2G03562' => 'aox', 'Aqoxy5G00316' => 'aox', 'Aqoxy5G00926' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1628KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1H403S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2FU6SJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.882I6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8YRY2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YN1SN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AF70II' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZA8L1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F916KL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHRD8H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KTZ8QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S22EMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8M29T' => 'arhy', 'AT1G04270' => 'ath', 'AT1G04280' => 'ath', 'AT1G06750' => 'ath', 'AT1G33850' => 'ath', 'AT2G30630' => 'ath', 'AT5G09490' => 'ath', 'AT5G09500' => 'ath', 'AT5G09510' => 'ath', 'AT5G43640' => 'ath', 'AT5G63070' => 'ath', 'ATR0605G315' => 'atr', 'Atru.chr11.175' => 'acertr', 'Atru.chr11.653' => 'acertr', 'Atru.chr3.1616' => 'acertr', 'Atru.chr4.2230' => 'acertr', 'Atru.chr4.2232' => 'acertr', 'Atru.chr5.1598' => 'acertr', 'Atru.chr5.1600' => 'acertr', 'Atru.chr5.2188' => 'acertr', 'AUR62008326' => 'cqu', 'AUR62011922' => 'cqu', 'AUR62011924' => 'cqu', 'AUR62021771' => 'cqu', 'AUR62032237' => 'cqu', 'AUR62032240' => 'cqu', 'BcaB01g05572' => 'bca', 'BcaB02g10337' => 'bca', 'BcaB04g19944' => 'bca', 'BcaB05g21548' => 'bca', 'BcaB05g21549' => 'bca', 'BcaB05g23227' => 'bca', 'BcaB06g26256' => 'bca', 'BcaB06g26257' => 'bca', 'BcaB06g28379' => 'bca', 'BcaC02g11159' => 'bca', 'BcaC03g13258' => 'bca', 'BcaC03g13259' => 'bca', 'BcaC05g24456' => 'bca', 'BcaC05g24457' => 'bca', 'BcaC07g36922' => 'bca', 'BcaC07g36923' => 'bca', 'BcaC07g42050' => 'bca', 'BcaC07g42176' => 'bca', 'BcaC07g42195' => 'bca', 'BcaC07g42196' => 'bca', 'BcaNung06674' => 'bca', 'BolC2t06351H' => 'bol', 'BolC2t06352H' => 'bol', 'BolC3t12993H' => 'bol', 'BolC4t23525H' => 'bol', 'BolC4t27475H' => 'bol', 'BolC5t29025H' => 'bol', 'BolC5t29026H' => 'bol', 'BolC8t46898H' => 'bol', 'BolC8t46899H' => 'bol', 'BolC8t52630H' => 'bol', 'BolC8t52765H' => 'bol', 'BolC9t53824H' => 'bol', 'BraA03t09760Z' => 'bra', 'BraA03t10990Z' => 'bra', 'BraA05t20413Z' => 'bra', 'BraA08t35602Z' => 'bra', 'BraA09t36458Z' => 'bra', 'BraA09t42018Z' => 'bra', 'BraA09t42129Z' => 'bra', 'BraA10t42536Z' => 'bra', 'BraA10t42537Z' => 'bra', 'C01p10690' => 'bna', 'C02p03890' => 'bna', 'C02p03900' => 'bna', 'C03p04620' => 'bna', 'C04p19870' => 'bna', 'C04p59670' => 'bna', 'C05p02460' => 'bna', 'C05p02470' => 'bna', 'C08p00980' => 'bna', 'C08p00990' => 'bna', 'C08p51030' => 'bna', 'C08p52360' => 'bna', 'C09p09120' => 'bna', 'CAN.G19.15' => 'can', 'CAN.G251.10' => 'can', 'CAN.G251.9' => 'can', 'CAN.G398.24' => 'can', 'CAN.G410.32' => 'can', 'CAN.G881.2' => 'can', 'CANSAT01G3025' => 'cansat', 'CANSAT78G1211' => 'cansat', 'CANSAT78G1218' => 'cansat', 'CANSAT78G1521' => 'cansat', 'CANSAT78G1670' => 'cansat', 'CARHR003600' => 'chi', 'CARHR003610' => 'chi', 'CARHR006290' => 'chi', 'CARHR006430' => 'chi', 'CARHR124110' => 'chi', 'CARHR203870' => 'chi', 'CARHR203880' => 'chi', 'CARHR203890' => 'chi', 'CARHR276880' => 'chi', 'Carub.0001s0346' => 'cru', 'Carub.0001s0347' => 'cru', 'Carub.0001s0607' => 'cru', 'Carub.0003s2768' => 'cru', 'Carub.0003s2769' => 'cru', 'Carub.0004s1178' => 'cru', 'Carub.0006s0806' => 'cru', 'Carub.0006s0807' => 'cru', 'Carub.0006s0808' => 'cru', 'Carub.0008s0501' => 'cru', 'Carub.0008s2379' => 'cru', 'Ca_08655_v3' => 'car', 'Ca_08922_v3' => 'car', 'Ca_08923_v3' => 'car', 'Ca_09119_v3' => 'car', 'Ca_09703_v3' => 'car', 'Ca_09705_v3' => 'car', 'Ca_09835_v3' => 'car', 'Ca_26403_v3' => 'car', 'Ca_30719_v3' => 'car', 'CBR_g17958' => 'cbr', 'CBR_g40516' => 'cbr', 'Cc00_g05350' => 'ccan', 'Cc01_g18690' => 'ccan', 'Cc03_g04830' => 'ccan', 'Cc03_g04850' => 'ccan', 'CDE02G4469' => 'cde', 'CDE06G0883' => 'cde', 'CDE06G1295' => 'cde', 'CDE06G1390' => 'cde', 'CDE07G0584' => 'cde', 'CDE07G1084' => 'cde', 'CDE08G1259' => 'cde', 'Cfa002341' => 'cfa', 'Cfa024337' => 'cfa', 'Ciclev10004749m.g' => 'ccl', 'Ciclev10006127m.g' => 'ccl', 'Ciclev10019720m.g' => 'ccl', 'Ciclev10022652m.g' => 'ccl', 'CiPaw.01G190400' => 'cil', 'CiPaw.01G190500' => 'cil', 'CiPaw.02G116400' => 'cil', 'CiPaw.02G116500' => 'cil', 'CiPaw.04G183000' => 'cil', 'CiPaw.04G183300' => 'cil', 'ClCG05G004610' => 'cla', 'ClCG05G004620' => 'cla', 'ClCG06G006730' => 'cla', 'ClCG06G006740' => 'cla', 'ClCG11G003690' => 'cla', 'COL.COLO4_08276' => 'col', 'COL.COLO4_08277' => 'col', 'COL.COLO4_15787' => 'col', 'COL.COLO4_15789' => 'col', 'Cpa.g.c44815' => 'cpa', 'Cpa.g.sc52.144' => 'cpa', 'Cpa.g.sc58.46' => 'cpa', 'Cpa.g.sc58.47' => 'cpa', 'Cre08.g360900' => 'cre', 'CsaV3_2G013030' => 'csa', 'CsaV3_2G013050' => 'csa', 'CsaV3_2G015620' => 'csa', 'CsaV3_3G012590' => 'csa', 'CsaV3_3G012600' => 'csa', 'CSS0001641' => 'camsi', 'CSS0008310' => 'camsi', 'CSS0013011' => 'camsi', 'CSS0017147' => 'camsi', 'CSS0022970' => 'camsi', 'CSS0025655' => 'camsi', 'CSS0028665' => 'camsi', 'CSS0029117' => 'camsi', 'CSS0032024' => 'camsi', 'CSS0039681' => 'camsi', 'CSS0046516' => 'camsi', 'CSS0050307' => 'camsi', 'DCAR_005871' => 'dca', 'DCAR_007342' => 'dca', 'DCAR_024228' => 'dca', 'DCAR_027277' => 'dca', 'DCAR_030718' => 'dca', 'Dinv20287' => 'din', 'Dinv22461' => 'din', 'Dinv22464' => 'din', 'Dinv29912' => 'din', 'Dinv29913' => 'din', 'Dinv34580' => 'din', 'Dinv34582' => 'din', 'Dinv44632' => 'din', 'Duzib052G0266' => 'dzi', 'Duzib133G0907' => 'dzi', 'Duzib133G1034' => 'dzi', 'Duzib138G0207' => 'dzi', 'Duzib138G0491' => 'dzi', 'Duzib151G0812' => 'dzi', 'Duzib151G1166' => 'dzi', 'Duzib168G0192' => 'dzi', 'Duzib211G0077' => 'dzi', 'Duzib212G0429' => 'dzi', 'Duzib212G0472' => 'dzi', 'ECA233G2617' => 'eca', 'ECA236G4188' => 'eca', 'ECA240G0936' => 'eca', 'ECA240G1129' => 'eca', 'ECA247G0623' => 'eca', 'EL10Ac5g10451' => 'bvu', 'EL10Ac5g10453' => 'bvu', 'EL10Ac5g10894' => 'bvu', 'Eucgr.H00192' => 'egr', 'Eucgr.H00193' => 'egr', 'Eucgr.H00194' => 'egr', 'Eucgr.J01562' => 'egr', 'Eucgr.K03301' => 'egr', 'FAN02G0632' => 'fan', 'FAN05G5378' => 'fan', 'FAN09G3247' => 'fan', 'FAN12G0435' => 'fan', 'FAN12G2426' => 'fan', 'FAN14G1707' => 'fan', 'FAN14G4725' => 'fan', 'FAN15G2071' => 'fan', 'FAN17G3065' => 'fan', 'FAN19G1376' => 'fan', 'FAN20G0354' => 'fan', 'FAN20G2429' => 'fan', 'FAN20G2658' => 'fan', 'FAN24G2343' => 'fan', 'FAN27G2362' => 'fan', 'FAN28G1765' => 'fan', 'FvH4_1g16020' => 'fve', 'FvH4_2g04890' => 'fve', 'FvH4_2g22270' => 'fve', 'FvH4_4g02630' => 'fve', 'FvH4_4g02640' => 'fve', 'FvH4_6g02650' => 'fve', 'Glyma.02G140600' => 'gma', 'Glyma.03G159900' => 'gma', 'Glyma.05G234800' => 'gma', 'Glyma.07G269600' => 'gma', 'Glyma.08G042300' => 'gma', 'Glyma.10G033500' => 'gma', 'Glyma.10G185200' => 'gma', 'Glyma.17G004300' => 'gma', 'Glyma.19G161900' => 'gma', 'Glyma.20G205100' => 'gma', 'Glyma.20G205200' => 'gma', 'Gohir.A01G139101' => 'ghi', 'Gohir.A02G035600' => 'ghi', 'Gohir.A02G117901' => 'ghi', 'Gohir.A07G210100' => 'ghi', 'Gohir.A07G210200' => 'ghi', 'Gohir.A08G061100' => 'ghi', 'Gohir.A09G223000' => 'ghi', 'Gohir.A09G223100' => 'ghi', 'Gohir.A10G113900' => 'ghi', 'Gohir.A10G114000' => 'ghi', 'Gohir.D02G042300' => 'ghi', 'Gohir.D07G216100' => 'ghi', 'Gohir.D07G216200' => 'ghi', 'Gohir.D08G070400' => 'ghi', 'Gohir.D09G225000' => 'ghi', 'Gohir.D09G225100' => 'ghi', 'Gohir.D10G152300' => 'ghi', 'Gohir.D10G153200' => 'ghi', 'Gohir.D11G133701' => 'ghi', 'Gorai.004G074100' => 'gra', 'Gorai.005G046800' => 'gra', 'Gorai.006G246500' => 'gra', 'Gorai.006G246600' => 'gra', 'Gorai.007G142900' => 'gra', 'Gorai.011G171000' => 'gra', 'Gorai.011G171100' => 'gra', 'Gorai.013G104300' => 'gra', 'Gorai.013G104400' => 'gra', 'GSVIVG01000754001' => 'vvi', 'GSVIVG01000756001' => 'vvi', 'GSVIVG01010903001' => 'vvi', 'GSVIVG01017623001' => 'vvi', 'GSVIVG01018113001' => 'vvi', 'GSVIVG01018116001' => 'vvi', 'GSVIVG01018118001' => 'vvi', 'HanXRQChr03g0076211' => 'han', 'HanXRQChr03g0092431' => 'han', 'HanXRQChr03g0092441' => 'han', 'HanXRQChr03g0092591' => 'han', 'HanXRQChr03g0092671' => 'han', 'HanXRQChr03g0092681' => 'han', 'HanXRQChr03g0092691' => 'han', 'HanXRQChr03g0092701' => 'han', 'HanXRQChr03g0092721' => 'han', 'HanXRQChr03g0092731' => 'han', 'HanXRQChr04g0113681' => 'han', 'HanXRQChr10g0281371' => 'han', 'HanXRQChr11g0337141' => 'han', 'HanXRQChr13g0424521' => 'han', 'HanXRQChr13g0424531' => 'han', 'HanXRQChr13g0424541' => 'han', 'HanXRQChr16g0498221' => 'han', 'Haze_04377' => 'cav', 'Haze_11298' => 'cav', 'Haze_24547' => 'cav', 'Haze_24550' => 'cav', 'Haze_26587' => 'cav', 'Hma1.2p1_0650F.1_g195410' => 'hma', 'Hma1.2p1_0893F.1_g233470' => 'hma', 'HPP92_006508' => 'vpl', 'HPP92_024780' => 'vpl', 'Hund02688' => 'sun', 'Hund09380' => 'sun', 'Hund09381' => 'sun', 'Hund09832' => 'sun', 'Hund09833' => 'sun', 'Hund11351' => 'sun', 'Hund11513' => 'sun', 'Lalb_Chr06g0162591' => 'lal', 'Lalb_Chr06g0162601' => 'lal', 'Lalb_Chr06g0169321' => 'lal', 'Lalb_Chr09g0330951' => 'lal', 'Lalb_Chr16g0387631' => 'lal', 'Lalb_Chr21g0306241' => 'lal', 'Lalb_Chr25g0290051' => 'lal', 'Lalb_Chr25g0290061' => 'lal', 'Lalb_Chr25g0290071' => 'lal', 'Lj1g0003876' => 'lja', 'Lj1P1207T36' => 'lonja', 'Lj2C1156G12' => 'lonja', 'Lj3A793G39' => 'lonja', 'Lj3C580G2' => 'lonja', 'Lj3C780G2' => 'lonja', 'Lj3C780T4' => 'lonja', 'Lj3C793G9' => 'lonja', 'Lj4g0012960' => 'lja', 'Lj5g0021252' => 'lja', 'Lj5g0021484' => 'lja', 'Lj5g0024528' => 'lja', 'Lj6A399T12' => 'lonja', 'Lj6A656G65' => 'lonja', 'Lsat_1_v5_gn_3_125500' => 'lsa', 'Lsat_1_v5_gn_3_125540' => 'lsa', 'Lsat_1_v5_gn_5_72701' => 'lsa', 'Lsat_1_v5_gn_8_91560' => 'lsa', 'Lsat_1_v5_gn_9_9640' => 'lsa', 'Manes.01G200600' => 'mes', 'Manes.01G200700' => 'mes', 'Manes.03G168900' => 'mes', 'Manes.03G169000' => 'mes', 'Manes.05G085801' => 'mes', 'Manes.05G086200' => 'mes', 'Manes.15G036700' => 'mes', 'Manes.15G036900' => 'mes', 'Mapoly0004s0172' => 'mpo', 'Mapoly0023s0001' => 'mpo', 'Mapoly0142s0012' => 'mpo', 'MBI01_g32854_MAGBIO' => 'mbi', 'MBI11_g24427_MAGBIO' => 'mbi', 'MBI11_g47319_MAGBIO' => 'mbi', 'MCO01G433' => 'mco', 'MD00G1187800' => 'mdo', 'MD04G1226500' => 'mdo', 'MD05G1203900' => 'mdo', 'MD10G1191100' => 'mdo', 'MD12G1243500' => 'mdo', 'MD13G1207000' => 'mdo', 'MD13G1207100' => 'mdo', 'MD16G1208600' => 'mdo', 'Medtr1g050352' => 'mtr', 'Medtr1g070385' => 'mtr', 'Medtr1g070450' => 'mtr', 'Medtr1g075200' => 'mtr', 'Medtr1g075250' => 'mtr', 'Medtr1g075260' => 'mtr', 'Medtr1g475250' => 'mtr', 'Medtr4g075450' => 'mtr', 'Medtr7g096300' => 'mtr', 'Medtr8g105110' => 'mtr', 'MELO3C006470.2' => 'cme', 'MELO3C006471.2' => 'cme', 'MELO3C020772.2' => 'cme', 'MELO3C026780.2' => 'cme', 'MELO3C026781.2' => 'cme', 'Migut.D00390' => 'egut', 'Migut.G00435' => 'egut', 'Migut.G00436' => 'egut', 'Migut.G00718' => 'egut', 'MSTRG.21891' => 'ama', 'MSTRG.26910' => 'ama', 'MSTRG.4099' => 'ama', 'MSTRG.9925' => 'ama', 'Nitab4.5_0000165g0010' => 'nta', 'Nitab4.5_0000209g0180' => 'nta', 'Nitab4.5_0000244g0440' => 'nta', 'Nitab4.5_0000525g0220' => 'nta', 'Nitab4.5_0001597g0020' => 'nta', 'Nitab4.5_0001878g0040' => 'nta', 'Nitab4.5_0001878g0060' => 'nta', 'Nitab4.5_0002838g0100' => 'nta', 'Nitab4.5_0002838g0120' => 'nta', 'Nitab4.5_0004798g0030' => 'nta', 'Nitab4.5_0005420g0010' => 'nta', 'Nitab4.5_0005507g0010' => 'nta', 'Nitab4.5_0005574g0020' => 'nta', 'Nitab4.5_0005838g0010' => 'nta', 'Nitab4.5_0010580g0020' => 'nta', 'Nn1g02599' => 'nnu', 'Nn1g02608' => 'nnu', 'Nn3g17742' => 'nnu', 'Nn3g19534' => 'nnu', 'Nn3g19535' => 'nnu', 'Oeu008790.1' => 'oeu', 'Oeu008792.1' => 'oeu', 'Oeu032590.1' => 'oeu', 'Oeu035349.1' => 'oeu', 'Oeu049791.1' => 'oeu', 'Os01g0774500' => 'osa', 'Os03g0628800' => 'osa', 'Os03g0798600' => 'osa', 'Os05g0508800' => 'osa', 'Peaxi162Scf00036g02018' => 'pax', 'Peaxi162Scf00578g00032' => 'pax', 'Peaxi162Scf00578g00317' => 'pax', 'Peaxi162Scf00785g00114' => 'pax', 'Peaxi162Scf00813g00119' => 'pax', 'Peaxi162Scf00906g00227' => 'pax', 'PGR004G0875' => 'pgr', 'PGR004G2424' => 'pgr', 'PGR031G1239' => 'pgr', 'PGR031G2474' => 'pgr', 'PGR044G0423' => 'pgr', 'PGSC0003DMG400001128' => 'stu', 'PGSC0003DMG400007336' => 'stu', 'PGSC0003DMG400016318' => 'stu', 'PGSC0003DMG400016319' => 'stu', 'PGSC0003DMG400018074' => 'stu', 'Phvul.001G157700' => 'pvu', 'Phvul.002G148550' => 'pvu', 'Phvul.002G320200' => 'pvu', 'Phvul.003G089200' => 'pvu', 'Phvul.007G126000' => 'pvu', 'Phvul.007G126100' => 'pvu', 'Phvul.007G178000' => 'pvu', 'Phvul.007G178200' => 'pvu', 'Potri.002G043000' => 'ptr', 'Potri.002G043200' => 'ptr', 'Potri.003G123750' => 'ptr', 'Potri.005G055401' => 'ptr', 'Potri.005G219700' => 'ptr', 'Potri.005G220000' => 'ptr', 'Potri.008G161901' => 'ptr', 'Potri.008G162000' => 'ptr', 'Potri.008G162400' => 'ptr', 'Potri.010G076900' => 'ptr', 'Pp3c12_9180' => 'ppa', 'Pp3c13_19770' => 'ppa', 'Pp3c14_22950' => 'ppa', 'Pp3c16_12160' => 'ppa', 'Pp3c27_7820' => 'ppa', 'Pp3c2_3490' => 'ppa', 'Pp3c3_23700' => 'ppa', 'Pp3c3_36520' => 'ppa', 'Pp3c4_15250' => 'ppa', 'PRCOL_00007002' => 'pco', 'Prupe.1G030600' => 'ppe', 'Prupe.1G030700' => 'ppe', 'Prupe.6G345200' => 'ppe', 'Prupe.8G230300' => 'ppe', 'Prupe.8G230500' => 'ppe', 'Psat3g059600' => 'psa', 'Psat5g200920' => 'psa', 'Psat6g056440' => 'psa', 'Psat6g057360' => 'psa', 'Psat6g134120' => 'psa', 'Psat6g134160' => 'psa', 'Psat7g008640' => 'psa', 'Psat7g185240' => 'psa', 'PSO017G1330' => 'pso', 'PSO063G6097' => 'pso', 'PSO170G0835' => 'pso', 'PSO170G2499' => 'pso', 'PSO210G5058' => 'pso', 'PSO210G6154' => 'pso', 'PSO585G0031' => 'pso', 'PSO832G0264' => 'pso', 'PSO832G4288' => 'pso', 'QL03p027355' => 'qlo', 'QL03p027430' => 'qlo', 'QL04p081380' => 'qlo', 'QL06p015642' => 'qlo', 'QL06p015650' => 'qlo', 'QL06p015686' => 'qlo', 'QL12p042927' => 'qlo', 'QL93p1863_0035' => 'qlo', 'RcHm_v2.0_Chr3g0450581' => 'rch', 'RcHm_v2.0_Chr4g0390371' => 'rch', 'RcHm_v2.0_Chr4g0390381' => 'rch', 'RcHm_v2.0_Chr4g0390491' => 'rch', 'RcHm_v2.0_Chr4g0390501' => 'rch', 'RcHm_v2.0_Chr6g0289231' => 'rch', 'Rhsim04G0190400' => 'rsi', 'Rhsim04G0190500' => 'rsi', 'Rhsim04G0190600' => 'rsi', 'Rhsim13G0031400' => 'rsi', 'Rhsim13G0165600' => 'rsi', 'RhsimUnG0114600' => 'rsi', 'RhsimUnG0114700' => 'rsi', 'Sabra02G0034800' => 'sbr', 'Sabra02G0035100' => 'sbr', 'Sabra05G0168600' => 'sbr', 'Sabra05G0168800' => 'sbr', 'Sabra08G0123700' => 'sbr', 'Sabra10G0031900' => 'sbr', 'Sabra13G0039000' => 'sbr', 'SalBow2G0782' => 'sbo', 'SalBow2G1403' => 'sbo', 'SalBow4G0074' => 'sbo', 'SalBow4G2635' => 'sbo', 'SalBow5G3010' => 'sbo', 'Sc05g0000870' => 'sci', 'Sc05g0000890' => 'sci', 'Sc13g0005000' => 'sci', 'Sc13g0005030' => 'sci', 'Sc19g0003790' => 'sci', 'Sc19g0003800' => 'sci', 'Sed0003467' => 'sed', 'Sed0009355' => 'sed', 'Sed0009894' => 'sed', 'Sed0011972' => 'sed', 'Sed0021483' => 'sed', 'Sed0021750' => 'sed', 'Sed0026279' => 'sed', 'SEGI_05312' => 'sgi', 'SEGI_10112' => 'sgi', 'SEGI_15835' => 'sgi', 'SEGI_30386' => 'sgi', 'SEGI_34122' => 'sgi', 'SEGI_35063' => 'sgi', 'SGA_v2.0_scaffold101G29794' => 'sas', 'SGA_v2.0_scaffold1G00573' => 'sas', 'SGA_v2.0_scaffold79G25637' => 'sas', 'SGA_v2.0_scaffold88G27283' => 'sas', 'SGA_v2.0_scaffold88G27285' => 'sas', 'SGA_v2.0_scaffold88G27331' => 'sas', 'SHI09937' => 'shi', 'SMO119G0302' => 'smo', 'SMO137G0231' => 'smo', 'SMO367G1151' => 'smo', 'Solyc02g082000.3' => 'sly', 'Solyc06g031670.3' => 'sly', 'Solyc06g053810.3' => 'sly', 'Solyc07g025457.1' => 'sly', 'Solyc08g059740.1' => 'sly', 'Solyc08g059750.3' => 'sly', 'Solyc09g083370.3' => 'sly', 'Solyc12g038950.3' => 'sly', 'Sopen02g026630' => 'spe', 'Sopen06g018930' => 'spe', 'Sopen06g018940' => 'spe', 'Sopen08g009460' => 'spe', 'Sopen09g032290' => 'spe', 'Sp1g03080' => 'spa', 'Sp1g03090' => 'spa', 'Sp1g05480' => 'spa', 'Sp2g07860' => 'spa', 'Sp2g08430' => 'spa', 'Sp2g08440' => 'spa', 'Sp2g26200' => 'spa', 'Sp4g13170' => 'spa', 'Sp6g33840' => 'spa', 'SpUn1204_0010' => 'spa', 'TAR365G0908' => 'tar', 'TAR381G1270' => 'tar', 'TAR381G1651' => 'tar', 'TAR625G1131' => 'tar', 'TAR633G0962' => 'tar', 'TAR633G1729' => 'tar', 'TAR633G1864' => 'tar', 'TAR636G0221' => 'tar', 'TAR636G0314' => 'tar', 'TAR636G3202' => 'tar', 'THA.LOC104800805' => 'tha', 'THA.LOC104801096' => 'tha', 'THA.LOC104801555' => 'tha', 'THA.LOC104808491' => 'tha', 'THA.LOC104808595' => 'tha', 'THA.LOC104815985' => 'tha', 'THA.LOC104822250' => 'tha', 'THA.LOC104826071' => 'tha', 'Thecc.01G265200' => 'tca', 'Thecc.01G265300' => 'tca', 'Thecc.01G265700' => 'tca', 'Thecc.03G109100' => 'tca', 'Thecc.04G245900' => 'tca', 'Thecc.04G246000' => 'tca', 'Thhalv10003334m.g' => 'esa', 'Thhalv10005508m.g' => 'esa', 'Thhalv10005643m.g' => 'esa', 'Thhalv10007316m.g' => 'esa', 'Thhalv10009006m.g' => 'esa', 'Thhalv10009309m.g' => 'esa', 'Thhalv10014917m.g' => 'esa', 'Thhalv10014919m.g' => 'esa', 'Thhalv10015393m.g' => 'esa', 'Thhalv10016515m.g' => 'esa', 'Thhalv10029242m.g' => 'esa', 'TPR.G16654' => 'tpr', 'TPR.G20589' => 'tpr', 'TPR.G23029' => 'tpr', 'TPR.G27731' => 'tpr', 'TPR.G28889' => 'tpr', 'TPR.G28899' => 'tpr', 'TPR.G30846' => 'tpr', 'TPR.G5452' => 'tpr', 'TPR.G5713' => 'tpr', 'TPR.G9046' => 'tpr', 'TPR.G9061' => 'tpr', 'TWI09G1075' => 'twi', 'TWI12G0806' => 'twi', 'TWI18G0108' => 'twi', 'TWI53G1361' => 'twi', 'TWI73G0185' => 'twi', 'TWI73G0427' => 'twi', 'unitig_37.g12001' => 'ugi', 'unitig_747.g21660' => 'ugi', 'unitig_748.g7232' => 'ugi', 'unitig_748.g7315' => 'ugi', 'unitig_85.g27262' => 'ugi', 'unitig_92.g28220' => 'ugi', 'vmacro02632' => 'vma', 'vmacro08410' => 'vma', 'vmacro08411' => 'vma', 'vmacro15407' => 'vma', 'VMungo0251G3619' => 'vmu', 'VMungo0720G1204' => 'vmu', 'VMungo0720G1918' => 'vmu', 'VMungo0720G2387' => 'vmu', 'VMungo0720G2961' => 'vmu', 'VMungo1215G2154' => 'vmu', 'VMungo1383G2411' => 'vmu', 'Zm00001eb051130' => 'zma', 'Zm00001eb116830' => 'zma', 'Zm00001eb116850' => 'zma', 'Zm00001eb151740' => 'zma', 'Zm00001eb292360' => 'zma', 'Zm00001eb301640' => 'zma' ), 'gf_id' => 'HOM05D000856', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000856' ), 'data_identifier' => 'HOM05D000856', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000856', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p00010' => 'bna', 'A03p04160' => 'bna', 'A03p17160' => 'bna', 'A04p23370' => 'bna', 'A05p14860' => 'bna', 'A08p37020' => 'bna', 'A09p08050' => 'bna', 'A09p66800' => 'bna', 'A09p67940' => 'bna', 'A10p02680' => 'bna', 'A10p05320' => 'bna', 'Aa31LG1G20560' => 'aar', 'Aa31LG1G20610' => 'aar', 'Aa31LG1G7810' => 'aar', 'Aa31LG5G3590' => 'aar', 'Aa31LG5G6140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3819' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4683' => 'aag', 'Actinidia04480' => 'ach', 'Actinidia05466' => 'ach', 'Actinidia08445' => 'ach', 'Actinidia21170' => 'ach', 'Actinidia24812' => 'ach', 'Actinidia24951' => 'ach', 'Actinidia40088' => 'ach', 'Ah.02g111660' => 'amhyb', 'Ah.11g048900' => 'amhyb', 'Ah.11g049910' => 'amhyb', 'AL1G13870' => 'aly', 'AL1G13880' => 'aly', 'AL1G16760' => 'aly', 'AL390U10020' => 'aly', 'AL4G25520' => 'aly', 'AL6G19890' => 'aly', 'AL6G19900' => 'aly', 'AL6G19910' => 'aly', 'AL8G40100' => 'aly', 'Aqoxy2G03562' => 'aox', 'Aqoxy5G00316' => 'aox', 'Aqoxy5G00926' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1628KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1H403S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2FU6SJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.882I6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8YRY2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YN1SN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AF70II' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZA8L1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F916KL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHRD8H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KTZ8QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S22EMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8M29T' => 'arhy', 'AT1G04270' => 'ath', 'AT1G04280' => 'ath', 'AT1G06750' => 'ath', 'AT1G33850' => 'ath', 'AT2G30630' => 'ath', 'AT5G09490' => 'ath', 'AT5G09500' => 'ath', 'AT5G09510' => 'ath', 'AT5G43640' => 'ath', 'AT5G63070' => 'ath', 'ATR0605G315' => 'atr', 'Atru.chr11.175' => 'acertr', 'Atru.chr11.653' => 'acertr', 'Atru.chr3.1616' => 'acertr', 'Atru.chr4.2230' => 'acertr', 'Atru.chr4.2232' => 'acertr', 'Atru.chr5.1598' => 'acertr', 'Atru.chr5.1600' => 'acertr', 'Atru.chr5.2188' => 'acertr', 'AUR62008326' => 'cqu', 'AUR62011922' => 'cqu', 'AUR62011924' => 'cqu', 'AUR62021771' => 'cqu', 'AUR62032237' => 'cqu', 'AUR62032240' => 'cqu', 'BcaB01g05572' => 'bca', 'BcaB02g10337' => 'bca', 'BcaB04g19944' => 'bca', 'BcaB05g21548' => 'bca', 'BcaB05g21549' => 'bca', 'BcaB05g23227' => 'bca', 'BcaB06g26256' => 'bca', 'BcaB06g26257' => 'bca', 'BcaB06g28379' => 'bca', 'BcaC02g11159' => 'bca', 'BcaC03g13258' => 'bca', 'BcaC03g13259' => 'bca', 'BcaC05g24456' => 'bca', 'BcaC05g24457' => 'bca', 'BcaC07g36922' => 'bca', 'BcaC07g36923' => 'bca', 'BcaC07g42050' => 'bca', 'BcaC07g42176' => 'bca', 'BcaC07g42195' => 'bca', 'BcaC07g42196' => 'bca', 'BcaNung06674' => 'bca', 'BolC2t06351H' => 'bol', 'BolC2t06352H' => 'bol', 'BolC3t12993H' => 'bol', 'BolC4t23525H' => 'bol', 'BolC4t27475H' => 'bol', 'BolC5t29025H' => 'bol', 'BolC5t29026H' => 'bol', 'BolC8t46898H' => 'bol', 'BolC8t46899H' => 'bol', 'BolC8t52630H' => 'bol', 'BolC8t52765H' => 'bol', 'BolC9t53824H' => 'bol', 'BraA03t09760Z' => 'bra', 'BraA03t10990Z' => 'bra', 'BraA05t20413Z' => 'bra', 'BraA08t35602Z' => 'bra', 'BraA09t36458Z' => 'bra', 'BraA09t42018Z' => 'bra', 'BraA09t42129Z' => 'bra', 'BraA10t42536Z' => 'bra', 'BraA10t42537Z' => 'bra', 'C01p10690' => 'bna', 'C02p03890' => 'bna', 'C02p03900' => 'bna', 'C03p04620' => 'bna', 'C04p19870' => 'bna', 'C04p59670' => 'bna', 'C05p02460' => 'bna', 'C05p02470' => 'bna', 'C08p00980' => 'bna', 'C08p00990' => 'bna', 'C08p51030' => 'bna', 'C08p52360' => 'bna', 'C09p09120' => 'bna', 'CAN.G19.15' => 'can', 'CAN.G251.10' => 'can', 'CAN.G251.9' => 'can', 'CAN.G398.24' => 'can', 'CAN.G410.32' => 'can', 'CAN.G881.2' => 'can', 'CANSAT01G3025' => 'cansat', 'CANSAT78G1211' => 'cansat', 'CANSAT78G1218' => 'cansat', 'CANSAT78G1521' => 'cansat', 'CANSAT78G1670' => 'cansat', 'CARHR003600' => 'chi', 'CARHR003610' => 'chi', 'CARHR006290' => 'chi', 'CARHR006430' => 'chi', 'CARHR124110' => 'chi', 'CARHR203870' => 'chi', 'CARHR203880' => 'chi', 'CARHR203890' => 'chi', 'CARHR276880' => 'chi', 'Carub.0001s0346' => 'cru', 'Carub.0001s0347' => 'cru', 'Carub.0001s0607' => 'cru', 'Carub.0003s2768' => 'cru', 'Carub.0003s2769' => 'cru', 'Carub.0004s1178' => 'cru', 'Carub.0006s0806' => 'cru', 'Carub.0006s0807' => 'cru', 'Carub.0006s0808' => 'cru', 'Carub.0008s0501' => 'cru', 'Carub.0008s2379' => 'cru', 'Ca_08655_v3' => 'car', 'Ca_08922_v3' => 'car', 'Ca_08923_v3' => 'car', 'Ca_09119_v3' => 'car', 'Ca_09703_v3' => 'car', 'Ca_09705_v3' => 'car', 'Ca_09835_v3' => 'car', 'Ca_26403_v3' => 'car', 'Ca_30719_v3' => 'car', 'CBR_g17958' => 'cbr', 'CBR_g40516' => 'cbr', 'Cc00_g05350' => 'ccan', 'Cc01_g18690' => 'ccan', 'Cc03_g04830' => 'ccan', 'Cc03_g04850' => 'ccan', 'CDE02G4469' => 'cde', 'CDE06G0883' => 'cde', 'CDE06G1295' => 'cde', 'CDE06G1390' => 'cde', 'CDE07G0584' => 'cde', 'CDE07G1084' => 'cde', 'CDE08G1259' => 'cde', 'Cfa002341' => 'cfa', 'Cfa024337' => 'cfa', 'Ciclev10004749m.g' => 'ccl', 'Ciclev10006127m.g' => 'ccl', 'Ciclev10019720m.g' => 'ccl', 'Ciclev10022652m.g' => 'ccl', 'CiPaw.01G190400' => 'cil', 'CiPaw.01G190500' => 'cil', 'CiPaw.02G116400' => 'cil', 'CiPaw.02G116500' => 'cil', 'CiPaw.04G183000' => 'cil', 'CiPaw.04G183300' => 'cil', 'ClCG05G004610' => 'cla', 'ClCG05G004620' => 'cla', 'ClCG06G006730' => 'cla', 'ClCG06G006740' => 'cla', 'ClCG11G003690' => 'cla', 'COL.COLO4_08276' => 'col', 'COL.COLO4_08277' => 'col', 'COL.COLO4_15787' => 'col', 'COL.COLO4_15789' => 'col', 'Cpa.g.c44815' => 'cpa', 'Cpa.g.sc52.144' => 'cpa', 'Cpa.g.sc58.46' => 'cpa', 'Cpa.g.sc58.47' => 'cpa', 'Cre08.g360900' => 'cre', 'CsaV3_2G013030' => 'csa', 'CsaV3_2G013050' => 'csa', 'CsaV3_2G015620' => 'csa', 'CsaV3_3G012590' => 'csa', 'CsaV3_3G012600' => 'csa', 'CSS0001641' => 'camsi', 'CSS0008310' => 'camsi', 'CSS0013011' => 'camsi', 'CSS0017147' => 'camsi', 'CSS0022970' => 'camsi', 'CSS0025655' => 'camsi', 'CSS0028665' => 'camsi', 'CSS0029117' => 'camsi', 'CSS0032024' => 'camsi', 'CSS0039681' => 'camsi', 'CSS0046516' => 'camsi', 'CSS0050307' => 'camsi', 'DCAR_005871' => 'dca', 'DCAR_007342' => 'dca', 'DCAR_024228' => 'dca', 'DCAR_027277' => 'dca', 'DCAR_030718' => 'dca', 'Dinv20287' => 'din', 'Dinv22461' => 'din', 'Dinv22464' => 'din', 'Dinv29912' => 'din', 'Dinv29913' => 'din', 'Dinv34580' => 'din', 'Dinv34582' => 'din', 'Dinv44632' => 'din', 'Duzib052G0266' => 'dzi', 'Duzib133G0907' => 'dzi', 'Duzib133G1034' => 'dzi', 'Duzib138G0207' => 'dzi', 'Duzib138G0491' => 'dzi', 'Duzib151G0812' => 'dzi', 'Duzib151G1166' => 'dzi', 'Duzib168G0192' => 'dzi', 'Duzib211G0077' => 'dzi', 'Duzib212G0429' => 'dzi', 'Duzib212G0472' => 'dzi', 'ECA233G2617' => 'eca', 'ECA236G4188' => 'eca', 'ECA240G0936' => 'eca', 'ECA240G1129' => 'eca', 'ECA247G0623' => 'eca', 'EL10Ac5g10451' => 'bvu', 'EL10Ac5g10453' => 'bvu', 'EL10Ac5g10894' => 'bvu', 'Eucgr.H00192' => 'egr', 'Eucgr.H00193' => 'egr', 'Eucgr.H00194' => 'egr', 'Eucgr.J01562' => 'egr', 'Eucgr.K03301' => 'egr', 'FAN02G0632' => 'fan', 'FAN05G5378' => 'fan', 'FAN09G3247' => 'fan', 'FAN12G0435' => 'fan', 'FAN12G2426' => 'fan', 'FAN14G1707' => 'fan', 'FAN14G4725' => 'fan', 'FAN15G2071' => 'fan', 'FAN17G3065' => 'fan', 'FAN19G1376' => 'fan', 'FAN20G0354' => 'fan', 'FAN20G2429' => 'fan', 'FAN20G2658' => 'fan', 'FAN24G2343' => 'fan', 'FAN27G2362' => 'fan', 'FAN28G1765' => 'fan', 'FvH4_1g16020' => 'fve', 'FvH4_2g04890' => 'fve', 'FvH4_2g22270' => 'fve', 'FvH4_4g02630' => 'fve', 'FvH4_4g02640' => 'fve', 'FvH4_6g02650' => 'fve', 'Glyma.02G140600' => 'gma', 'Glyma.03G159900' => 'gma', 'Glyma.05G234800' => 'gma', 'Glyma.07G269600' => 'gma', 'Glyma.08G042300' => 'gma', 'Glyma.10G033500' => 'gma', 'Glyma.10G185200' => 'gma', 'Glyma.17G004300' => 'gma', 'Glyma.19G161900' => 'gma', 'Glyma.20G205100' => 'gma', 'Glyma.20G205200' => 'gma', 'Gohir.A01G139101' => 'ghi', 'Gohir.A02G035600' => 'ghi', 'Gohir.A02G117901' => 'ghi', 'Gohir.A07G210100' => 'ghi', 'Gohir.A07G210200' => 'ghi', 'Gohir.A08G061100' => 'ghi', 'Gohir.A09G223000' => 'ghi', 'Gohir.A09G223100' => 'ghi', 'Gohir.A10G113900' => 'ghi', 'Gohir.A10G114000' => 'ghi', 'Gohir.D02G042300' => 'ghi', 'Gohir.D07G216100' => 'ghi', 'Gohir.D07G216200' => 'ghi', 'Gohir.D08G070400' => 'ghi', 'Gohir.D09G225000' => 'ghi', 'Gohir.D09G225100' => 'ghi', 'Gohir.D10G152300' => 'ghi', 'Gohir.D10G153200' => 'ghi', 'Gohir.D11G133701' => 'ghi', 'Gorai.004G074100' => 'gra', 'Gorai.005G046800' => 'gra', 'Gorai.006G246500' => 'gra', 'Gorai.006G246600' => 'gra', 'Gorai.007G142900' => 'gra', 'Gorai.011G171000' => 'gra', 'Gorai.011G171100' => 'gra', 'Gorai.013G104300' => 'gra', 'Gorai.013G104400' => 'gra', 'GSVIVG01000754001' => 'vvi', 'GSVIVG01000756001' => 'vvi', 'GSVIVG01010903001' => 'vvi', 'GSVIVG01017623001' => 'vvi', 'GSVIVG01018113001' => 'vvi', 'GSVIVG01018116001' => 'vvi', 'GSVIVG01018118001' => 'vvi', 'HanXRQChr03g0076211' => 'han', 'HanXRQChr03g0092431' => 'han', 'HanXRQChr03g0092441' => 'han', 'HanXRQChr03g0092591' => 'han', 'HanXRQChr03g0092671' => 'han', 'HanXRQChr03g0092681' => 'han', 'HanXRQChr03g0092691' => 'han', 'HanXRQChr03g0092701' => 'han', 'HanXRQChr03g0092721' => 'han', 'HanXRQChr03g0092731' => 'han', 'HanXRQChr04g0113681' => 'han', 'HanXRQChr10g0281371' => 'han', 'HanXRQChr11g0337141' => 'han', 'HanXRQChr13g0424521' => 'han', 'HanXRQChr13g0424531' => 'han', 'HanXRQChr13g0424541' => 'han', 'HanXRQChr16g0498221' => 'han', 'Haze_04377' => 'cav', 'Haze_11298' => 'cav', 'Haze_24547' => 'cav', 'Haze_24550' => 'cav', 'Haze_26587' => 'cav', 'Hma1.2p1_0650F.1_g195410' => 'hma', 'Hma1.2p1_0893F.1_g233470' => 'hma', 'HPP92_006508' => 'vpl', 'HPP92_024780' => 'vpl', 'Hund02688' => 'sun', 'Hund09380' => 'sun', 'Hund09381' => 'sun', 'Hund09832' => 'sun', 'Hund09833' => 'sun', 'Hund11351' => 'sun', 'Hund11513' => 'sun', 'Lalb_Chr06g0162591' => 'lal', 'Lalb_Chr06g0162601' => 'lal', 'Lalb_Chr06g0169321' => 'lal', 'Lalb_Chr09g0330951' => 'lal', 'Lalb_Chr16g0387631' => 'lal', 'Lalb_Chr21g0306241' => 'lal', 'Lalb_Chr25g0290051' => 'lal', 'Lalb_Chr25g0290061' => 'lal', 'Lalb_Chr25g0290071' => 'lal', 'Lj1g0003876' => 'lja', 'Lj1P1207T36' => 'lonja', 'Lj2C1156G12' => 'lonja', 'Lj3A793G39' => 'lonja', 'Lj3C580G2' => 'lonja', 'Lj3C780G2' => 'lonja', 'Lj3C780T4' => 'lonja', 'Lj3C793G9' => 'lonja', 'Lj4g0012960' => 'lja', 'Lj5g0021252' => 'lja', 'Lj5g0021484' => 'lja', 'Lj5g0024528' => 'lja', 'Lj6A399T12' => 'lonja', 'Lj6A656G65' => 'lonja', 'Lsat_1_v5_gn_3_125500' => 'lsa', 'Lsat_1_v5_gn_3_125540' => 'lsa', 'Lsat_1_v5_gn_5_72701' => 'lsa', 'Lsat_1_v5_gn_8_91560' => 'lsa', 'Lsat_1_v5_gn_9_9640' => 'lsa', 'Manes.01G200600' => 'mes', 'Manes.01G200700' => 'mes', 'Manes.03G168900' => 'mes', 'Manes.03G169000' => 'mes', 'Manes.05G085801' => 'mes', 'Manes.05G086200' => 'mes', 'Manes.15G036700' => 'mes', 'Manes.15G036900' => 'mes', 'Mapoly0004s0172' => 'mpo', 'Mapoly0023s0001' => 'mpo', 'Mapoly0142s0012' => 'mpo', 'MBI01_g32854_MAGBIO' => 'mbi', 'MBI11_g24427_MAGBIO' => 'mbi', 'MBI11_g47319_MAGBIO' => 'mbi', 'MCO01G433' => 'mco', 'MD00G1187800' => 'mdo', 'MD04G1226500' => 'mdo', 'MD05G1203900' => 'mdo', 'MD10G1191100' => 'mdo', 'MD12G1243500' => 'mdo', 'MD13G1207000' => 'mdo', 'MD13G1207100' => 'mdo', 'MD16G1208600' => 'mdo', 'Medtr1g050352' => 'mtr', 'Medtr1g070385' => 'mtr', 'Medtr1g070450' => 'mtr', 'Medtr1g075200' => 'mtr', 'Medtr1g075250' => 'mtr', 'Medtr1g075260' => 'mtr', 'Medtr1g475250' => 'mtr', 'Medtr4g075450' => 'mtr', 'Medtr7g096300' => 'mtr', 'Medtr8g105110' => 'mtr', 'MELO3C006470.2' => 'cme', 'MELO3C006471.2' => 'cme', 'MELO3C020772.2' => 'cme', 'MELO3C026780.2' => 'cme', 'MELO3C026781.2' => 'cme', 'Migut.D00390' => 'egut', 'Migut.G00435' => 'egut', 'Migut.G00436' => 'egut', 'Migut.G00718' => 'egut', 'MSTRG.21891' => 'ama', 'MSTRG.26910' => 'ama', 'MSTRG.4099' => 'ama', 'MSTRG.9925' => 'ama', 'Nitab4.5_0000165g0010' => 'nta', 'Nitab4.5_0000209g0180' => 'nta', 'Nitab4.5_0000244g0440' => 'nta', 'Nitab4.5_0000525g0220' => 'nta', 'Nitab4.5_0001597g0020' => 'nta', 'Nitab4.5_0001878g0040' => 'nta', 'Nitab4.5_0001878g0060' => 'nta', 'Nitab4.5_0002838g0100' => 'nta', 'Nitab4.5_0002838g0120' => 'nta', 'Nitab4.5_0004798g0030' => 'nta', 'Nitab4.5_0005420g0010' => 'nta', 'Nitab4.5_0005507g0010' => 'nta', 'Nitab4.5_0005574g0020' => 'nta', 'Nitab4.5_0005838g0010' => 'nta', 'Nitab4.5_0010580g0020' => 'nta', 'Nn1g02599' => 'nnu', 'Nn1g02608' => 'nnu', 'Nn3g17742' => 'nnu', 'Nn3g19534' => 'nnu', 'Nn3g19535' => 'nnu', 'Oeu008790.1' => 'oeu', 'Oeu008792.1' => 'oeu', 'Oeu032590.1' => 'oeu', 'Oeu035349.1' => 'oeu', 'Oeu049791.1' => 'oeu', 'Os01g0774500' => 'osa', 'Os03g0628800' => 'osa', 'Os03g0798600' => 'osa', 'Os05g0508800' => 'osa', 'Peaxi162Scf00036g02018' => 'pax', 'Peaxi162Scf00578g00032' => 'pax', 'Peaxi162Scf00578g00317' => 'pax', 'Peaxi162Scf00785g00114' => 'pax', 'Peaxi162Scf00813g00119' => 'pax', 'Peaxi162Scf00906g00227' => 'pax', 'PGR004G0875' => 'pgr', 'PGR004G2424' => 'pgr', 'PGR031G1239' => 'pgr', 'PGR031G2474' => 'pgr', 'PGR044G0423' => 'pgr', 'PGSC0003DMG400001128' => 'stu', 'PGSC0003DMG400007336' => 'stu', 'PGSC0003DMG400016318' => 'stu', 'PGSC0003DMG400016319' => 'stu', 'PGSC0003DMG400018074' => 'stu', 'Phvul.001G157700' => 'pvu', 'Phvul.002G148550' => 'pvu', 'Phvul.002G320200' => 'pvu', 'Phvul.003G089200' => 'pvu', 'Phvul.007G126000' => 'pvu', 'Phvul.007G126100' => 'pvu', 'Phvul.007G178000' => 'pvu', 'Phvul.007G178200' => 'pvu', 'Potri.002G043000' => 'ptr', 'Potri.002G043200' => 'ptr', 'Potri.003G123750' => 'ptr', 'Potri.005G055401' => 'ptr', 'Potri.005G219700' => 'ptr', 'Potri.005G220000' => 'ptr', 'Potri.008G161901' => 'ptr', 'Potri.008G162000' => 'ptr', 'Potri.008G162400' => 'ptr', 'Potri.010G076900' => 'ptr', 'Pp3c12_9180' => 'ppa', 'Pp3c13_19770' => 'ppa', 'Pp3c14_22950' => 'ppa', 'Pp3c16_12160' => 'ppa', 'Pp3c27_7820' => 'ppa', 'Pp3c2_3490' => 'ppa', 'Pp3c3_23700' => 'ppa', 'Pp3c3_36520' => 'ppa', 'Pp3c4_15250' => 'ppa', 'PRCOL_00007002' => 'pco', 'Prupe.1G030600' => 'ppe', 'Prupe.1G030700' => 'ppe', 'Prupe.6G345200' => 'ppe', 'Prupe.8G230300' => 'ppe', 'Prupe.8G230500' => 'ppe', 'Psat3g059600' => 'psa', 'Psat5g200920' => 'psa', 'Psat6g056440' => 'psa', 'Psat6g057360' => 'psa', 'Psat6g134120' => 'psa', 'Psat6g134160' => 'psa', 'Psat7g008640' => 'psa', 'Psat7g185240' => 'psa', 'PSO017G1330' => 'pso', 'PSO063G6097' => 'pso', 'PSO170G0835' => 'pso', 'PSO170G2499' => 'pso', 'PSO210G5058' => 'pso', 'PSO210G6154' => 'pso', 'PSO585G0031' => 'pso', 'PSO832G0264' => 'pso', 'PSO832G4288' => 'pso', 'QL03p027355' => 'qlo', 'QL03p027430' => 'qlo', 'QL04p081380' => 'qlo', 'QL06p015642' => 'qlo', 'QL06p015650' => 'qlo', 'QL06p015686' => 'qlo', 'QL12p042927' => 'qlo', 'QL93p1863_0035' => 'qlo', 'RcHm_v2.0_Chr3g0450581' => 'rch', 'RcHm_v2.0_Chr4g0390371' => 'rch', 'RcHm_v2.0_Chr4g0390381' => 'rch', 'RcHm_v2.0_Chr4g0390491' => 'rch', 'RcHm_v2.0_Chr4g0390501' => 'rch', 'RcHm_v2.0_Chr6g0289231' => 'rch', 'Rhsim04G0190400' => 'rsi', 'Rhsim04G0190500' => 'rsi', 'Rhsim04G0190600' => 'rsi', 'Rhsim13G0031400' => 'rsi', 'Rhsim13G0165600' => 'rsi', 'RhsimUnG0114600' => 'rsi', 'RhsimUnG0114700' => 'rsi', 'Sabra02G0034800' => 'sbr', 'Sabra02G0035100' => 'sbr', 'Sabra05G0168600' => 'sbr', 'Sabra05G0168800' => 'sbr', 'Sabra08G0123700' => 'sbr', 'Sabra10G0031900' => 'sbr', 'Sabra13G0039000' => 'sbr', 'SalBow2G0782' => 'sbo', 'SalBow2G1403' => 'sbo', 'SalBow4G0074' => 'sbo', 'SalBow4G2635' => 'sbo', 'SalBow5G3010' => 'sbo', 'Sc05g0000870' => 'sci', 'Sc05g0000890' => 'sci', 'Sc13g0005000' => 'sci', 'Sc13g0005030' => 'sci', 'Sc19g0003790' => 'sci', 'Sc19g0003800' => 'sci', 'Sed0003467' => 'sed', 'Sed0009355' => 'sed', 'Sed0009894' => 'sed', 'Sed0011972' => 'sed', 'Sed0021483' => 'sed', 'Sed0021750' => 'sed', 'Sed0026279' => 'sed', 'SEGI_05312' => 'sgi', 'SEGI_10112' => 'sgi', 'SEGI_15835' => 'sgi', 'SEGI_30386' => 'sgi', 'SEGI_34122' => 'sgi', 'SEGI_35063' => 'sgi', 'SGA_v2.0_scaffold101G29794' => 'sas', 'SGA_v2.0_scaffold1G00573' => 'sas', 'SGA_v2.0_scaffold79G25637' => 'sas', 'SGA_v2.0_scaffold88G27283' => 'sas', 'SGA_v2.0_scaffold88G27285' => 'sas', 'SGA_v2.0_scaffold88G27331' => 'sas', 'SHI09937' => 'shi', 'SMO119G0302' => 'smo', 'SMO137G0231' => 'smo', 'SMO367G1151' => 'smo', 'Solyc02g082000.3' => 'sly', 'Solyc06g031670.3' => 'sly', 'Solyc06g053810.3' => 'sly', 'Solyc07g025457.1' => 'sly', 'Solyc08g059740.1' => 'sly', 'Solyc08g059750.3' => 'sly', 'Solyc09g083370.3' => 'sly', 'Solyc12g038950.3' => 'sly', 'Sopen02g026630' => 'spe', 'Sopen06g018930' => 'spe', 'Sopen06g018940' => 'spe', 'Sopen08g009460' => 'spe', 'Sopen09g032290' => 'spe', 'Sp1g03080' => 'spa', 'Sp1g03090' => 'spa', 'Sp1g05480' => 'spa', 'Sp2g07860' => 'spa', 'Sp2g08430' => 'spa', 'Sp2g08440' => 'spa', 'Sp2g26200' => 'spa', 'Sp4g13170' => 'spa', 'Sp6g33840' => 'spa', 'SpUn1204_0010' => 'spa', 'TAR365G0908' => 'tar', 'TAR381G1270' => 'tar', 'TAR381G1651' => 'tar', 'TAR625G1131' => 'tar', 'TAR633G0962' => 'tar', 'TAR633G1729' => 'tar', 'TAR633G1864' => 'tar', 'TAR636G0221' => 'tar', 'TAR636G0314' => 'tar', 'TAR636G3202' => 'tar', 'THA.LOC104800805' => 'tha', 'THA.LOC104801096' => 'tha', 'THA.LOC104801555' => 'tha', 'THA.LOC104808491' => 'tha', 'THA.LOC104808595' => 'tha', 'THA.LOC104815985' => 'tha', 'THA.LOC104822250' => 'tha', 'THA.LOC104826071' => 'tha', 'Thecc.01G265200' => 'tca', 'Thecc.01G265300' => 'tca', 'Thecc.01G265700' => 'tca', 'Thecc.03G109100' => 'tca', 'Thecc.04G245900' => 'tca', 'Thecc.04G246000' => 'tca', 'Thhalv10003334m.g' => 'esa', 'Thhalv10005508m.g' => 'esa', 'Thhalv10005643m.g' => 'esa', 'Thhalv10007316m.g' => 'esa', 'Thhalv10009006m.g' => 'esa', 'Thhalv10009309m.g' => 'esa', 'Thhalv10014917m.g' => 'esa', 'Thhalv10014919m.g' => 'esa', 'Thhalv10015393m.g' => 'esa', 'Thhalv10016515m.g' => 'esa', 'Thhalv10029242m.g' => 'esa', 'TPR.G16654' => 'tpr', 'TPR.G20589' => 'tpr', 'TPR.G23029' => 'tpr', 'TPR.G27731' => 'tpr', 'TPR.G28889' => 'tpr', 'TPR.G28899' => 'tpr', 'TPR.G30846' => 'tpr', 'TPR.G5452' => 'tpr', 'TPR.G5713' => 'tpr', 'TPR.G9046' => 'tpr', 'TPR.G9061' => 'tpr', 'TWI09G1075' => 'twi', 'TWI12G0806' => 'twi', 'TWI18G0108' => 'twi', 'TWI53G1361' => 'twi', 'TWI73G0185' => 'twi', 'TWI73G0427' => 'twi', 'unitig_37.g12001' => 'ugi', 'unitig_747.g21660' => 'ugi', 'unitig_748.g7232' => 'ugi', 'unitig_748.g7315' => 'ugi', 'unitig_85.g27262' => 'ugi', 'unitig_92.g28220' => 'ugi', 'vmacro02632' => 'vma', 'vmacro08410' => 'vma', 'vmacro08411' => 'vma', 'vmacro15407' => 'vma', 'VMungo0251G3619' => 'vmu', 'VMungo0720G1204' => 'vmu', 'VMungo0720G1918' => 'vmu', 'VMungo0720G2387' => 'vmu', 'VMungo0720G2961' => 'vmu', 'VMungo1215G2154' => 'vmu', 'VMungo1383G2411' => 'vmu', 'Zm00001eb051130' => 'zma', 'Zm00001eb116830' => 'zma', 'Zm00001eb116850' => 'zma', 'Zm00001eb151740' => 'zma', 'Zm00001eb292360' => 'zma', 'Zm00001eb301640' => 'zma' ) $gf_id = 'HOM05D000856' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000856' ) $data_identifier = 'HOM05D000856' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 13, 'ath' => (int) 10, 'atr' => (int) 1, 'acertr' => (int) 8, 'cqu' => (int) 6, 'bca' => (int) 21, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 11, 'car' => (int) 9, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 8, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 5, 'fan' => (int) 16, 'fve' => (int) 6, 'gma' => (int) 11, 'ghi' => (int) 19, 'gra' => (int) 9, 'vvi' => (int) 7, 'han' => (int) 17, 'cav' => (int) 5, 'hma' => (int) 2, 'vpl' => (int) 2, 'sun' => (int) 7, 'lal' => (int) 9, 'lja' => (int) 5, 'lonja' => (int) 9, 'lsa' => (int) 5, 'mes' => (int) 8, 'mpo' => (int) 3, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 10, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 15, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 9, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 9, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 6, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 5, 'spa' => (int) 10, 'tar' => (int) 10, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 11, 'tpr' => (int) 11, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 4, 'vmu' => (int) 7, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb301640' $species_info = array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ) $local_species = 'aar' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000856', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p00010' => 'bna', 'A03p04160' => 'bna', 'A03p17160' => 'bna', 'A04p23370' => 'bna', 'A05p14860' => 'bna', 'A08p37020' => 'bna', 'A09p08050' => 'bna', 'A09p66800' => 'bna', 'A09p67940' => 'bna', 'A10p02680' => 'bna', 'A10p05320' => 'bna', 'Aa31LG1G20560' => 'aar', 'Aa31LG1G20610' => 'aar', 'Aa31LG1G7810' => 'aar', 'Aa31LG5G3590' => 'aar', 'Aa31LG5G6140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3819' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4683' => 'aag', 'Actinidia04480' => 'ach', 'Actinidia05466' => 'ach', 'Actinidia08445' => 'ach', 'Actinidia21170' => 'ach', 'Actinidia24812' => 'ach', 'Actinidia24951' => 'ach', 'Actinidia40088' => 'ach', 'Ah.02g111660' => 'amhyb', 'Ah.11g048900' => 'amhyb', 'Ah.11g049910' => 'amhyb', 'AL1G13870' => 'aly', 'AL1G13880' => 'aly', 'AL1G16760' => 'aly', 'AL390U10020' => 'aly', 'AL4G25520' => 'aly', 'AL6G19890' => 'aly', 'AL6G19900' => 'aly', 'AL6G19910' => 'aly', 'AL8G40100' => 'aly', 'Aqoxy2G03562' => 'aox', 'Aqoxy5G00316' => 'aox', 'Aqoxy5G00926' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1628KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1H403S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2FU6SJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.882I6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8YRY2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YN1SN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AF70II' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZA8L1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F916KL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHRD8H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KTZ8QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S22EMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8M29T' => 'arhy', 'AT1G04270' => 'ath', 'AT1G04280' => 'ath', 'AT1G06750' => 'ath', 'AT1G33850' => 'ath', 'AT2G30630' => 'ath', 'AT5G09490' => 'ath', 'AT5G09500' => 'ath', 'AT5G09510' => 'ath', 'AT5G43640' => 'ath', 'AT5G63070' => 'ath', 'ATR0605G315' => 'atr', 'Atru.chr11.175' => 'acertr', 'Atru.chr11.653' => 'acertr', 'Atru.chr3.1616' => 'acertr', 'Atru.chr4.2230' => 'acertr', 'Atru.chr4.2232' => 'acertr', 'Atru.chr5.1598' => 'acertr', 'Atru.chr5.1600' => 'acertr', 'Atru.chr5.2188' => 'acertr', 'AUR62008326' => 'cqu', 'AUR62011922' => 'cqu', 'AUR62011924' => 'cqu', 'AUR62021771' => 'cqu', 'AUR62032237' => 'cqu', 'AUR62032240' => 'cqu', 'BcaB01g05572' => 'bca', 'BcaB02g10337' => 'bca', 'BcaB04g19944' => 'bca', 'BcaB05g21548' => 'bca', 'BcaB05g21549' => 'bca', 'BcaB05g23227' => 'bca', 'BcaB06g26256' => 'bca', 'BcaB06g26257' => 'bca', 'BcaB06g28379' => 'bca', 'BcaC02g11159' => 'bca', 'BcaC03g13258' => 'bca', 'BcaC03g13259' => 'bca', 'BcaC05g24456' => 'bca', 'BcaC05g24457' => 'bca', 'BcaC07g36922' => 'bca', 'BcaC07g36923' => 'bca', 'BcaC07g42050' => 'bca', 'BcaC07g42176' => 'bca', 'BcaC07g42195' => 'bca', 'BcaC07g42196' => 'bca', 'BcaNung06674' => 'bca', 'BolC2t06351H' => 'bol', 'BolC2t06352H' => 'bol', 'BolC3t12993H' => 'bol', 'BolC4t23525H' => 'bol', 'BolC4t27475H' => 'bol', 'BolC5t29025H' => 'bol', 'BolC5t29026H' => 'bol', 'BolC8t46898H' => 'bol', 'BolC8t46899H' => 'bol', 'BolC8t52630H' => 'bol', 'BolC8t52765H' => 'bol', 'BolC9t53824H' => 'bol', 'BraA03t09760Z' => 'bra', 'BraA03t10990Z' => 'bra', 'BraA05t20413Z' => 'bra', 'BraA08t35602Z' => 'bra', 'BraA09t36458Z' => 'bra', 'BraA09t42018Z' => 'bra', 'BraA09t42129Z' => 'bra', 'BraA10t42536Z' => 'bra', 'BraA10t42537Z' => 'bra', 'C01p10690' => 'bna', 'C02p03890' => 'bna', 'C02p03900' => 'bna', 'C03p04620' => 'bna', 'C04p19870' => 'bna', 'C04p59670' => 'bna', 'C05p02460' => 'bna', 'C05p02470' => 'bna', 'C08p00980' => 'bna', 'C08p00990' => 'bna', 'C08p51030' => 'bna', 'C08p52360' => 'bna', 'C09p09120' => 'bna', 'CAN.G19.15' => 'can', 'CAN.G251.10' => 'can', 'CAN.G251.9' => 'can', 'CAN.G398.24' => 'can', 'CAN.G410.32' => 'can', 'CAN.G881.2' => 'can', 'CANSAT01G3025' => 'cansat', 'CANSAT78G1211' => 'cansat', 'CANSAT78G1218' => 'cansat', 'CANSAT78G1521' => 'cansat', 'CANSAT78G1670' => 'cansat', 'CARHR003600' => 'chi', 'CARHR003610' => 'chi', 'CARHR006290' => 'chi', 'CARHR006430' => 'chi', 'CARHR124110' => 'chi', 'CARHR203870' => 'chi', 'CARHR203880' => 'chi', 'CARHR203890' => 'chi', 'CARHR276880' => 'chi', 'Carub.0001s0346' => 'cru', 'Carub.0001s0347' => 'cru', 'Carub.0001s0607' => 'cru', 'Carub.0003s2768' => 'cru', 'Carub.0003s2769' => 'cru', 'Carub.0004s1178' => 'cru', 'Carub.0006s0806' => 'cru', 'Carub.0006s0807' => 'cru', 'Carub.0006s0808' => 'cru', 'Carub.0008s0501' => 'cru', 'Carub.0008s2379' => 'cru', 'Ca_08655_v3' => 'car', 'Ca_08922_v3' => 'car', 'Ca_08923_v3' => 'car', 'Ca_09119_v3' => 'car', 'Ca_09703_v3' => 'car', 'Ca_09705_v3' => 'car', 'Ca_09835_v3' => 'car', 'Ca_26403_v3' => 'car', 'Ca_30719_v3' => 'car', 'CBR_g17958' => 'cbr', 'CBR_g40516' => 'cbr', 'Cc00_g05350' => 'ccan', 'Cc01_g18690' => 'ccan', 'Cc03_g04830' => 'ccan', 'Cc03_g04850' => 'ccan', 'CDE02G4469' => 'cde', 'CDE06G0883' => 'cde', 'CDE06G1295' => 'cde', 'CDE06G1390' => 'cde', 'CDE07G0584' => 'cde', 'CDE07G1084' => 'cde', 'CDE08G1259' => 'cde', 'Cfa002341' => 'cfa', 'Cfa024337' => 'cfa', 'Ciclev10004749m.g' => 'ccl', 'Ciclev10006127m.g' => 'ccl', 'Ciclev10019720m.g' => 'ccl', 'Ciclev10022652m.g' => 'ccl', 'CiPaw.01G190400' => 'cil', 'CiPaw.01G190500' => 'cil', 'CiPaw.02G116400' => 'cil', 'CiPaw.02G116500' => 'cil', 'CiPaw.04G183000' => 'cil', 'CiPaw.04G183300' => 'cil', 'ClCG05G004610' => 'cla', 'ClCG05G004620' => 'cla', 'ClCG06G006730' => 'cla', 'ClCG06G006740' => 'cla', 'ClCG11G003690' => 'cla', 'COL.COLO4_08276' => 'col', 'COL.COLO4_08277' => 'col', 'COL.COLO4_15787' => 'col', 'COL.COLO4_15789' => 'col', 'Cpa.g.c44815' => 'cpa', 'Cpa.g.sc52.144' => 'cpa', 'Cpa.g.sc58.46' => 'cpa', 'Cpa.g.sc58.47' => 'cpa', 'Cre08.g360900' => 'cre', 'CsaV3_2G013030' => 'csa', 'CsaV3_2G013050' => 'csa', 'CsaV3_2G015620' => 'csa', 'CsaV3_3G012590' => 'csa', 'CsaV3_3G012600' => 'csa', 'CSS0001641' => 'camsi', 'CSS0008310' => 'camsi', 'CSS0013011' => 'camsi', 'CSS0017147' => 'camsi', 'CSS0022970' => 'camsi', 'CSS0025655' => 'camsi', 'CSS0028665' => 'camsi', 'CSS0029117' => 'camsi', 'CSS0032024' => 'camsi', 'CSS0039681' => 'camsi', 'CSS0046516' => 'camsi', 'CSS0050307' => 'camsi', 'DCAR_005871' => 'dca', 'DCAR_007342' => 'dca', 'DCAR_024228' => 'dca', 'DCAR_027277' => 'dca', 'DCAR_030718' => 'dca', 'Dinv20287' => 'din', 'Dinv22461' => 'din', 'Dinv22464' => 'din', 'Dinv29912' => 'din', 'Dinv29913' => 'din', 'Dinv34580' => 'din', 'Dinv34582' => 'din', 'Dinv44632' => 'din', 'Duzib052G0266' => 'dzi', 'Duzib133G0907' => 'dzi', 'Duzib133G1034' => 'dzi', 'Duzib138G0207' => 'dzi', 'Duzib138G0491' => 'dzi', 'Duzib151G0812' => 'dzi', 'Duzib151G1166' => 'dzi', 'Duzib168G0192' => 'dzi', 'Duzib211G0077' => 'dzi', 'Duzib212G0429' => 'dzi', 'Duzib212G0472' => 'dzi', 'ECA233G2617' => 'eca', 'ECA236G4188' => 'eca', 'ECA240G0936' => 'eca', 'ECA240G1129' => 'eca', 'ECA247G0623' => 'eca', 'EL10Ac5g10451' => 'bvu', 'EL10Ac5g10453' => 'bvu', 'EL10Ac5g10894' => 'bvu', 'Eucgr.H00192' => 'egr', 'Eucgr.H00193' => 'egr', 'Eucgr.H00194' => 'egr', 'Eucgr.J01562' => 'egr', 'Eucgr.K03301' => 'egr', 'FAN02G0632' => 'fan', 'FAN05G5378' => 'fan', 'FAN09G3247' => 'fan', 'FAN12G0435' => 'fan', 'FAN12G2426' => 'fan', 'FAN14G1707' => 'fan', 'FAN14G4725' => 'fan', 'FAN15G2071' => 'fan', 'FAN17G3065' => 'fan', 'FAN19G1376' => 'fan', 'FAN20G0354' => 'fan', 'FAN20G2429' => 'fan', 'FAN20G2658' => 'fan', 'FAN24G2343' => 'fan', 'FAN27G2362' => 'fan', 'FAN28G1765' => 'fan', 'FvH4_1g16020' => 'fve', 'FvH4_2g04890' => 'fve', 'FvH4_2g22270' => 'fve', 'FvH4_4g02630' => 'fve', 'FvH4_4g02640' => 'fve', 'FvH4_6g02650' => 'fve', 'Glyma.02G140600' => 'gma', 'Glyma.03G159900' => 'gma', 'Glyma.05G234800' => 'gma', 'Glyma.07G269600' => 'gma', 'Glyma.08G042300' => 'gma', 'Glyma.10G033500' => 'gma', 'Glyma.10G185200' => 'gma', 'Glyma.17G004300' => 'gma', 'Glyma.19G161900' => 'gma', 'Glyma.20G205100' => 'gma', 'Glyma.20G205200' => 'gma', 'Gohir.A01G139101' => 'ghi', 'Gohir.A02G035600' => 'ghi', 'Gohir.A02G117901' => 'ghi', 'Gohir.A07G210100' => 'ghi', 'Gohir.A07G210200' => 'ghi', 'Gohir.A08G061100' => 'ghi', 'Gohir.A09G223000' => 'ghi', 'Gohir.A09G223100' => 'ghi', 'Gohir.A10G113900' => 'ghi', 'Gohir.A10G114000' => 'ghi', 'Gohir.D02G042300' => 'ghi', 'Gohir.D07G216100' => 'ghi', 'Gohir.D07G216200' => 'ghi', 'Gohir.D08G070400' => 'ghi', 'Gohir.D09G225000' => 'ghi', 'Gohir.D09G225100' => 'ghi', 'Gohir.D10G152300' => 'ghi', 'Gohir.D10G153200' => 'ghi', 'Gohir.D11G133701' => 'ghi', 'Gorai.004G074100' => 'gra', 'Gorai.005G046800' => 'gra', 'Gorai.006G246500' => 'gra', 'Gorai.006G246600' => 'gra', 'Gorai.007G142900' => 'gra', 'Gorai.011G171000' => 'gra', 'Gorai.011G171100' => 'gra', 'Gorai.013G104300' => 'gra', 'Gorai.013G104400' => 'gra', 'GSVIVG01000754001' => 'vvi', 'GSVIVG01000756001' => 'vvi', 'GSVIVG01010903001' => 'vvi', 'GSVIVG01017623001' => 'vvi', 'GSVIVG01018113001' => 'vvi', 'GSVIVG01018116001' => 'vvi', 'GSVIVG01018118001' => 'vvi', 'HanXRQChr03g0076211' => 'han', 'HanXRQChr03g0092431' => 'han', 'HanXRQChr03g0092441' => 'han', 'HanXRQChr03g0092591' => 'han', 'HanXRQChr03g0092671' => 'han', 'HanXRQChr03g0092681' => 'han', 'HanXRQChr03g0092691' => 'han', 'HanXRQChr03g0092701' => 'han', 'HanXRQChr03g0092721' => 'han', 'HanXRQChr03g0092731' => 'han', 'HanXRQChr04g0113681' => 'han', 'HanXRQChr10g0281371' => 'han', 'HanXRQChr11g0337141' => 'han', 'HanXRQChr13g0424521' => 'han', 'HanXRQChr13g0424531' => 'han', 'HanXRQChr13g0424541' => 'han', 'HanXRQChr16g0498221' => 'han', 'Haze_04377' => 'cav', 'Haze_11298' => 'cav', 'Haze_24547' => 'cav', 'Haze_24550' => 'cav', 'Haze_26587' => 'cav', 'Hma1.2p1_0650F.1_g195410' => 'hma', 'Hma1.2p1_0893F.1_g233470' => 'hma', 'HPP92_006508' => 'vpl', 'HPP92_024780' => 'vpl', 'Hund02688' => 'sun', 'Hund09380' => 'sun', 'Hund09381' => 'sun', 'Hund09832' => 'sun', 'Hund09833' => 'sun', 'Hund11351' => 'sun', 'Hund11513' => 'sun', 'Lalb_Chr06g0162591' => 'lal', 'Lalb_Chr06g0162601' => 'lal', 'Lalb_Chr06g0169321' => 'lal', 'Lalb_Chr09g0330951' => 'lal', 'Lalb_Chr16g0387631' => 'lal', 'Lalb_Chr21g0306241' => 'lal', 'Lalb_Chr25g0290051' => 'lal', 'Lalb_Chr25g0290061' => 'lal', 'Lalb_Chr25g0290071' => 'lal', 'Lj1g0003876' => 'lja', 'Lj1P1207T36' => 'lonja', 'Lj2C1156G12' => 'lonja', 'Lj3A793G39' => 'lonja', 'Lj3C580G2' => 'lonja', 'Lj3C780G2' => 'lonja', 'Lj3C780T4' => 'lonja', 'Lj3C793G9' => 'lonja', 'Lj4g0012960' => 'lja', 'Lj5g0021252' => 'lja', 'Lj5g0021484' => 'lja', 'Lj5g0024528' => 'lja', 'Lj6A399T12' => 'lonja', 'Lj6A656G65' => 'lonja', 'Lsat_1_v5_gn_3_125500' => 'lsa', 'Lsat_1_v5_gn_3_125540' => 'lsa', 'Lsat_1_v5_gn_5_72701' => 'lsa', 'Lsat_1_v5_gn_8_91560' => 'lsa', 'Lsat_1_v5_gn_9_9640' => 'lsa', 'Manes.01G200600' => 'mes', 'Manes.01G200700' => 'mes', 'Manes.03G168900' => 'mes', 'Manes.03G169000' => 'mes', 'Manes.05G085801' => 'mes', 'Manes.05G086200' => 'mes', 'Manes.15G036700' => 'mes', 'Manes.15G036900' => 'mes', 'Mapoly0004s0172' => 'mpo', 'Mapoly0023s0001' => 'mpo', 'Mapoly0142s0012' => 'mpo', 'MBI01_g32854_MAGBIO' => 'mbi', 'MBI11_g24427_MAGBIO' => 'mbi', 'MBI11_g47319_MAGBIO' => 'mbi', 'MCO01G433' => 'mco', 'MD00G1187800' => 'mdo', 'MD04G1226500' => 'mdo', 'MD05G1203900' => 'mdo', 'MD10G1191100' => 'mdo', 'MD12G1243500' => 'mdo', 'MD13G1207000' => 'mdo', 'MD13G1207100' => 'mdo', 'MD16G1208600' => 'mdo', 'Medtr1g050352' => 'mtr', 'Medtr1g070385' => 'mtr', 'Medtr1g070450' => 'mtr', 'Medtr1g075200' => 'mtr', 'Medtr1g075250' => 'mtr', 'Medtr1g075260' => 'mtr', 'Medtr1g475250' => 'mtr', 'Medtr4g075450' => 'mtr', 'Medtr7g096300' => 'mtr', 'Medtr8g105110' => 'mtr', 'MELO3C006470.2' => 'cme', 'MELO3C006471.2' => 'cme', 'MELO3C020772.2' => 'cme', 'MELO3C026780.2' => 'cme', 'MELO3C026781.2' => 'cme', 'Migut.D00390' => 'egut', 'Migut.G00435' => 'egut', 'Migut.G00436' => 'egut', 'Migut.G00718' => 'egut', 'MSTRG.21891' => 'ama', 'MSTRG.26910' => 'ama', 'MSTRG.4099' => 'ama', 'MSTRG.9925' => 'ama', 'Nitab4.5_0000165g0010' => 'nta', 'Nitab4.5_0000209g0180' => 'nta', 'Nitab4.5_0000244g0440' => 'nta', 'Nitab4.5_0000525g0220' => 'nta', 'Nitab4.5_0001597g0020' => 'nta', 'Nitab4.5_0001878g0040' => 'nta', 'Nitab4.5_0001878g0060' => 'nta', 'Nitab4.5_0002838g0100' => 'nta', 'Nitab4.5_0002838g0120' => 'nta', 'Nitab4.5_0004798g0030' => 'nta', 'Nitab4.5_0005420g0010' => 'nta', 'Nitab4.5_0005507g0010' => 'nta', 'Nitab4.5_0005574g0020' => 'nta', 'Nitab4.5_0005838g0010' => 'nta', 'Nitab4.5_0010580g0020' => 'nta', 'Nn1g02599' => 'nnu', 'Nn1g02608' => 'nnu', 'Nn3g17742' => 'nnu', 'Nn3g19534' => 'nnu', 'Nn3g19535' => 'nnu', 'Oeu008790.1' => 'oeu', 'Oeu008792.1' => 'oeu', 'Oeu032590.1' => 'oeu', 'Oeu035349.1' => 'oeu', 'Oeu049791.1' => 'oeu', 'Os01g0774500' => 'osa', 'Os03g0628800' => 'osa', 'Os03g0798600' => 'osa', 'Os05g0508800' => 'osa', 'Peaxi162Scf00036g02018' => 'pax', 'Peaxi162Scf00578g00032' => 'pax', 'Peaxi162Scf00578g00317' => 'pax', 'Peaxi162Scf00785g00114' => 'pax', 'Peaxi162Scf00813g00119' => 'pax', 'Peaxi162Scf00906g00227' => 'pax', 'PGR004G0875' => 'pgr', 'PGR004G2424' => 'pgr', 'PGR031G1239' => 'pgr', 'PGR031G2474' => 'pgr', 'PGR044G0423' => 'pgr', 'PGSC0003DMG400001128' => 'stu', 'PGSC0003DMG400007336' => 'stu', 'PGSC0003DMG400016318' => 'stu', 'PGSC0003DMG400016319' => 'stu', 'PGSC0003DMG400018074' => 'stu', 'Phvul.001G157700' => 'pvu', 'Phvul.002G148550' => 'pvu', 'Phvul.002G320200' => 'pvu', 'Phvul.003G089200' => 'pvu', 'Phvul.007G126000' => 'pvu', 'Phvul.007G126100' => 'pvu', 'Phvul.007G178000' => 'pvu', 'Phvul.007G178200' => 'pvu', 'Potri.002G043000' => 'ptr', 'Potri.002G043200' => 'ptr', 'Potri.003G123750' => 'ptr', 'Potri.005G055401' => 'ptr', 'Potri.005G219700' => 'ptr', 'Potri.005G220000' => 'ptr', 'Potri.008G161901' => 'ptr', 'Potri.008G162000' => 'ptr', 'Potri.008G162400' => 'ptr', 'Potri.010G076900' => 'ptr', 'Pp3c12_9180' => 'ppa', 'Pp3c13_19770' => 'ppa', 'Pp3c14_22950' => 'ppa', 'Pp3c16_12160' => 'ppa', 'Pp3c27_7820' => 'ppa', 'Pp3c2_3490' => 'ppa', 'Pp3c3_23700' => 'ppa', 'Pp3c3_36520' => 'ppa', 'Pp3c4_15250' => 'ppa', 'PRCOL_00007002' => 'pco', 'Prupe.1G030600' => 'ppe', 'Prupe.1G030700' => 'ppe', 'Prupe.6G345200' => 'ppe', 'Prupe.8G230300' => 'ppe', 'Prupe.8G230500' => 'ppe', 'Psat3g059600' => 'psa', 'Psat5g200920' => 'psa', 'Psat6g056440' => 'psa', 'Psat6g057360' => 'psa', 'Psat6g134120' => 'psa', 'Psat6g134160' => 'psa', 'Psat7g008640' => 'psa', 'Psat7g185240' => 'psa', 'PSO017G1330' => 'pso', 'PSO063G6097' => 'pso', 'PSO170G0835' => 'pso', 'PSO170G2499' => 'pso', 'PSO210G5058' => 'pso', 'PSO210G6154' => 'pso', 'PSO585G0031' => 'pso', 'PSO832G0264' => 'pso', 'PSO832G4288' => 'pso', 'QL03p027355' => 'qlo', 'QL03p027430' => 'qlo', 'QL04p081380' => 'qlo', 'QL06p015642' => 'qlo', 'QL06p015650' => 'qlo', 'QL06p015686' => 'qlo', 'QL12p042927' => 'qlo', 'QL93p1863_0035' => 'qlo', 'RcHm_v2.0_Chr3g0450581' => 'rch', 'RcHm_v2.0_Chr4g0390371' => 'rch', 'RcHm_v2.0_Chr4g0390381' => 'rch', 'RcHm_v2.0_Chr4g0390491' => 'rch', 'RcHm_v2.0_Chr4g0390501' => 'rch', 'RcHm_v2.0_Chr6g0289231' => 'rch', 'Rhsim04G0190400' => 'rsi', 'Rhsim04G0190500' => 'rsi', 'Rhsim04G0190600' => 'rsi', 'Rhsim13G0031400' => 'rsi', 'Rhsim13G0165600' => 'rsi', 'RhsimUnG0114600' => 'rsi', 'RhsimUnG0114700' => 'rsi', 'Sabra02G0034800' => 'sbr', 'Sabra02G0035100' => 'sbr', 'Sabra05G0168600' => 'sbr', 'Sabra05G0168800' => 'sbr', 'Sabra08G0123700' => 'sbr', 'Sabra10G0031900' => 'sbr', 'Sabra13G0039000' => 'sbr', 'SalBow2G0782' => 'sbo', 'SalBow2G1403' => 'sbo', 'SalBow4G0074' => 'sbo', 'SalBow4G2635' => 'sbo', 'SalBow5G3010' => 'sbo', 'Sc05g0000870' => 'sci', 'Sc05g0000890' => 'sci', 'Sc13g0005000' => 'sci', 'Sc13g0005030' => 'sci', 'Sc19g0003790' => 'sci', 'Sc19g0003800' => 'sci', 'Sed0003467' => 'sed', 'Sed0009355' => 'sed', 'Sed0009894' => 'sed', 'Sed0011972' => 'sed', 'Sed0021483' => 'sed', 'Sed0021750' => 'sed', 'Sed0026279' => 'sed', 'SEGI_05312' => 'sgi', 'SEGI_10112' => 'sgi', 'SEGI_15835' => 'sgi', 'SEGI_30386' => 'sgi', 'SEGI_34122' => 'sgi', 'SEGI_35063' => 'sgi', 'SGA_v2.0_scaffold101G29794' => 'sas', 'SGA_v2.0_scaffold1G00573' => 'sas', 'SGA_v2.0_scaffold79G25637' => 'sas', 'SGA_v2.0_scaffold88G27283' => 'sas', 'SGA_v2.0_scaffold88G27285' => 'sas', 'SGA_v2.0_scaffold88G27331' => 'sas', 'SHI09937' => 'shi', 'SMO119G0302' => 'smo', 'SMO137G0231' => 'smo', 'SMO367G1151' => 'smo', 'Solyc02g082000.3' => 'sly', 'Solyc06g031670.3' => 'sly', 'Solyc06g053810.3' => 'sly', 'Solyc07g025457.1' => 'sly', 'Solyc08g059740.1' => 'sly', 'Solyc08g059750.3' => 'sly', 'Solyc09g083370.3' => 'sly', 'Solyc12g038950.3' => 'sly', 'Sopen02g026630' => 'spe', 'Sopen06g018930' => 'spe', 'Sopen06g018940' => 'spe', 'Sopen08g009460' => 'spe', 'Sopen09g032290' => 'spe', 'Sp1g03080' => 'spa', 'Sp1g03090' => 'spa', 'Sp1g05480' => 'spa', 'Sp2g07860' => 'spa', 'Sp2g08430' => 'spa', 'Sp2g08440' => 'spa', 'Sp2g26200' => 'spa', 'Sp4g13170' => 'spa', 'Sp6g33840' => 'spa', 'SpUn1204_0010' => 'spa', 'TAR365G0908' => 'tar', 'TAR381G1270' => 'tar', 'TAR381G1651' => 'tar', 'TAR625G1131' => 'tar', 'TAR633G0962' => 'tar', 'TAR633G1729' => 'tar', 'TAR633G1864' => 'tar', 'TAR636G0221' => 'tar', 'TAR636G0314' => 'tar', 'TAR636G3202' => 'tar', 'THA.LOC104800805' => 'tha', 'THA.LOC104801096' => 'tha', 'THA.LOC104801555' => 'tha', 'THA.LOC104808491' => 'tha', 'THA.LOC104808595' => 'tha', 'THA.LOC104815985' => 'tha', 'THA.LOC104822250' => 'tha', 'THA.LOC104826071' => 'tha', 'Thecc.01G265200' => 'tca', 'Thecc.01G265300' => 'tca', 'Thecc.01G265700' => 'tca', 'Thecc.03G109100' => 'tca', 'Thecc.04G245900' => 'tca', 'Thecc.04G246000' => 'tca', 'Thhalv10003334m.g' => 'esa', 'Thhalv10005508m.g' => 'esa', 'Thhalv10005643m.g' => 'esa', 'Thhalv10007316m.g' => 'esa', 'Thhalv10009006m.g' => 'esa', 'Thhalv10009309m.g' => 'esa', 'Thhalv10014917m.g' => 'esa', 'Thhalv10014919m.g' => 'esa', 'Thhalv10015393m.g' => 'esa', 'Thhalv10016515m.g' => 'esa', 'Thhalv10029242m.g' => 'esa', 'TPR.G16654' => 'tpr', 'TPR.G20589' => 'tpr', 'TPR.G23029' => 'tpr', 'TPR.G27731' => 'tpr', 'TPR.G28889' => 'tpr', 'TPR.G28899' => 'tpr', 'TPR.G30846' => 'tpr', 'TPR.G5452' => 'tpr', 'TPR.G5713' => 'tpr', 'TPR.G9046' => 'tpr', 'TPR.G9061' => 'tpr', 'TWI09G1075' => 'twi', 'TWI12G0806' => 'twi', 'TWI18G0108' => 'twi', 'TWI53G1361' => 'twi', 'TWI73G0185' => 'twi', 'TWI73G0427' => 'twi', 'unitig_37.g12001' => 'ugi', 'unitig_747.g21660' => 'ugi', 'unitig_748.g7232' => 'ugi', 'unitig_748.g7315' => 'ugi', 'unitig_85.g27262' => 'ugi', 'unitig_92.g28220' => 'ugi', 'vmacro02632' => 'vma', 'vmacro08410' => 'vma', 'vmacro08411' => 'vma', 'vmacro15407' => 'vma', 'VMungo0251G3619' => 'vmu', 'VMungo0720G1204' => 'vmu', 'VMungo0720G1918' => 'vmu', 'VMungo0720G2387' => 'vmu', 'VMungo0720G2961' => 'vmu', 'VMungo1215G2154' => 'vmu', 'VMungo1383G2411' => 'vmu', 'Zm00001eb051130' => 'zma', 'Zm00001eb116830' => 'zma', 'Zm00001eb116850' => 'zma', 'Zm00001eb151740' => 'zma', 'Zm00001eb292360' => 'zma', 'Zm00001eb301640' => 'zma' ), 'gf_id' => 'HOM05D000856', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000856' ), 'data_identifier' => 'HOM05D000856', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000856', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p00010' => 'bna', 'A03p04160' => 'bna', 'A03p17160' => 'bna', 'A04p23370' => 'bna', 'A05p14860' => 'bna', 'A08p37020' => 'bna', 'A09p08050' => 'bna', 'A09p66800' => 'bna', 'A09p67940' => 'bna', 'A10p02680' => 'bna', 'A10p05320' => 'bna', 'Aa31LG1G20560' => 'aar', 'Aa31LG1G20610' => 'aar', 'Aa31LG1G7810' => 'aar', 'Aa31LG5G3590' => 'aar', 'Aa31LG5G6140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3819' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4683' => 'aag', 'Actinidia04480' => 'ach', 'Actinidia05466' => 'ach', 'Actinidia08445' => 'ach', 'Actinidia21170' => 'ach', 'Actinidia24812' => 'ach', 'Actinidia24951' => 'ach', 'Actinidia40088' => 'ach', 'Ah.02g111660' => 'amhyb', 'Ah.11g048900' => 'amhyb', 'Ah.11g049910' => 'amhyb', 'AL1G13870' => 'aly', 'AL1G13880' => 'aly', 'AL1G16760' => 'aly', 'AL390U10020' => 'aly', 'AL4G25520' => 'aly', 'AL6G19890' => 'aly', 'AL6G19900' => 'aly', 'AL6G19910' => 'aly', 'AL8G40100' => 'aly', 'Aqoxy2G03562' => 'aox', 'Aqoxy5G00316' => 'aox', 'Aqoxy5G00926' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1628KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1H403S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2FU6SJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.882I6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8YRY2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YN1SN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AF70II' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZA8L1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F916KL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHRD8H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KTZ8QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S22EMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8M29T' => 'arhy', 'AT1G04270' => 'ath', 'AT1G04280' => 'ath', 'AT1G06750' => 'ath', 'AT1G33850' => 'ath', 'AT2G30630' => 'ath', 'AT5G09490' => 'ath', 'AT5G09500' => 'ath', 'AT5G09510' => 'ath', 'AT5G43640' => 'ath', 'AT5G63070' => 'ath', 'ATR0605G315' => 'atr', 'Atru.chr11.175' => 'acertr', 'Atru.chr11.653' => 'acertr', 'Atru.chr3.1616' => 'acertr', 'Atru.chr4.2230' => 'acertr', 'Atru.chr4.2232' => 'acertr', 'Atru.chr5.1598' => 'acertr', 'Atru.chr5.1600' => 'acertr', 'Atru.chr5.2188' => 'acertr', 'AUR62008326' => 'cqu', 'AUR62011922' => 'cqu', 'AUR62011924' => 'cqu', 'AUR62021771' => 'cqu', 'AUR62032237' => 'cqu', 'AUR62032240' => 'cqu', 'BcaB01g05572' => 'bca', 'BcaB02g10337' => 'bca', 'BcaB04g19944' => 'bca', 'BcaB05g21548' => 'bca', 'BcaB05g21549' => 'bca', 'BcaB05g23227' => 'bca', 'BcaB06g26256' => 'bca', 'BcaB06g26257' => 'bca', 'BcaB06g28379' => 'bca', 'BcaC02g11159' => 'bca', 'BcaC03g13258' => 'bca', 'BcaC03g13259' => 'bca', 'BcaC05g24456' => 'bca', 'BcaC05g24457' => 'bca', 'BcaC07g36922' => 'bca', 'BcaC07g36923' => 'bca', 'BcaC07g42050' => 'bca', 'BcaC07g42176' => 'bca', 'BcaC07g42195' => 'bca', 'BcaC07g42196' => 'bca', 'BcaNung06674' => 'bca', 'BolC2t06351H' => 'bol', 'BolC2t06352H' => 'bol', 'BolC3t12993H' => 'bol', 'BolC4t23525H' => 'bol', 'BolC4t27475H' => 'bol', 'BolC5t29025H' => 'bol', 'BolC5t29026H' => 'bol', 'BolC8t46898H' => 'bol', 'BolC8t46899H' => 'bol', 'BolC8t52630H' => 'bol', 'BolC8t52765H' => 'bol', 'BolC9t53824H' => 'bol', 'BraA03t09760Z' => 'bra', 'BraA03t10990Z' => 'bra', 'BraA05t20413Z' => 'bra', 'BraA08t35602Z' => 'bra', 'BraA09t36458Z' => 'bra', 'BraA09t42018Z' => 'bra', 'BraA09t42129Z' => 'bra', 'BraA10t42536Z' => 'bra', 'BraA10t42537Z' => 'bra', 'C01p10690' => 'bna', 'C02p03890' => 'bna', 'C02p03900' => 'bna', 'C03p04620' => 'bna', 'C04p19870' => 'bna', 'C04p59670' => 'bna', 'C05p02460' => 'bna', 'C05p02470' => 'bna', 'C08p00980' => 'bna', 'C08p00990' => 'bna', 'C08p51030' => 'bna', 'C08p52360' => 'bna', 'C09p09120' => 'bna', 'CAN.G19.15' => 'can', 'CAN.G251.10' => 'can', 'CAN.G251.9' => 'can', 'CAN.G398.24' => 'can', 'CAN.G410.32' => 'can', 'CAN.G881.2' => 'can', 'CANSAT01G3025' => 'cansat', 'CANSAT78G1211' => 'cansat', 'CANSAT78G1218' => 'cansat', 'CANSAT78G1521' => 'cansat', 'CANSAT78G1670' => 'cansat', 'CARHR003600' => 'chi', 'CARHR003610' => 'chi', 'CARHR006290' => 'chi', 'CARHR006430' => 'chi', 'CARHR124110' => 'chi', 'CARHR203870' => 'chi', 'CARHR203880' => 'chi', 'CARHR203890' => 'chi', 'CARHR276880' => 'chi', 'Carub.0001s0346' => 'cru', 'Carub.0001s0347' => 'cru', 'Carub.0001s0607' => 'cru', 'Carub.0003s2768' => 'cru', 'Carub.0003s2769' => 'cru', 'Carub.0004s1178' => 'cru', 'Carub.0006s0806' => 'cru', 'Carub.0006s0807' => 'cru', 'Carub.0006s0808' => 'cru', 'Carub.0008s0501' => 'cru', 'Carub.0008s2379' => 'cru', 'Ca_08655_v3' => 'car', 'Ca_08922_v3' => 'car', 'Ca_08923_v3' => 'car', 'Ca_09119_v3' => 'car', 'Ca_09703_v3' => 'car', 'Ca_09705_v3' => 'car', 'Ca_09835_v3' => 'car', 'Ca_26403_v3' => 'car', 'Ca_30719_v3' => 'car', 'CBR_g17958' => 'cbr', 'CBR_g40516' => 'cbr', 'Cc00_g05350' => 'ccan', 'Cc01_g18690' => 'ccan', 'Cc03_g04830' => 'ccan', 'Cc03_g04850' => 'ccan', 'CDE02G4469' => 'cde', 'CDE06G0883' => 'cde', 'CDE06G1295' => 'cde', 'CDE06G1390' => 'cde', 'CDE07G0584' => 'cde', 'CDE07G1084' => 'cde', 'CDE08G1259' => 'cde', 'Cfa002341' => 'cfa', 'Cfa024337' => 'cfa', 'Ciclev10004749m.g' => 'ccl', 'Ciclev10006127m.g' => 'ccl', 'Ciclev10019720m.g' => 'ccl', 'Ciclev10022652m.g' => 'ccl', 'CiPaw.01G190400' => 'cil', 'CiPaw.01G190500' => 'cil', 'CiPaw.02G116400' => 'cil', 'CiPaw.02G116500' => 'cil', 'CiPaw.04G183000' => 'cil', 'CiPaw.04G183300' => 'cil', 'ClCG05G004610' => 'cla', 'ClCG05G004620' => 'cla', 'ClCG06G006730' => 'cla', 'ClCG06G006740' => 'cla', 'ClCG11G003690' => 'cla', 'COL.COLO4_08276' => 'col', 'COL.COLO4_08277' => 'col', 'COL.COLO4_15787' => 'col', 'COL.COLO4_15789' => 'col', 'Cpa.g.c44815' => 'cpa', 'Cpa.g.sc52.144' => 'cpa', 'Cpa.g.sc58.46' => 'cpa', 'Cpa.g.sc58.47' => 'cpa', 'Cre08.g360900' => 'cre', 'CsaV3_2G013030' => 'csa', 'CsaV3_2G013050' => 'csa', 'CsaV3_2G015620' => 'csa', 'CsaV3_3G012590' => 'csa', 'CsaV3_3G012600' => 'csa', 'CSS0001641' => 'camsi', 'CSS0008310' => 'camsi', 'CSS0013011' => 'camsi', 'CSS0017147' => 'camsi', 'CSS0022970' => 'camsi', 'CSS0025655' => 'camsi', 'CSS0028665' => 'camsi', 'CSS0029117' => 'camsi', 'CSS0032024' => 'camsi', 'CSS0039681' => 'camsi', 'CSS0046516' => 'camsi', 'CSS0050307' => 'camsi', 'DCAR_005871' => 'dca', 'DCAR_007342' => 'dca', 'DCAR_024228' => 'dca', 'DCAR_027277' => 'dca', 'DCAR_030718' => 'dca', 'Dinv20287' => 'din', 'Dinv22461' => 'din', 'Dinv22464' => 'din', 'Dinv29912' => 'din', 'Dinv29913' => 'din', 'Dinv34580' => 'din', 'Dinv34582' => 'din', 'Dinv44632' => 'din', 'Duzib052G0266' => 'dzi', 'Duzib133G0907' => 'dzi', 'Duzib133G1034' => 'dzi', 'Duzib138G0207' => 'dzi', 'Duzib138G0491' => 'dzi', 'Duzib151G0812' => 'dzi', 'Duzib151G1166' => 'dzi', 'Duzib168G0192' => 'dzi', 'Duzib211G0077' => 'dzi', 'Duzib212G0429' => 'dzi', 'Duzib212G0472' => 'dzi', 'ECA233G2617' => 'eca', 'ECA236G4188' => 'eca', 'ECA240G0936' => 'eca', 'ECA240G1129' => 'eca', 'ECA247G0623' => 'eca', 'EL10Ac5g10451' => 'bvu', 'EL10Ac5g10453' => 'bvu', 'EL10Ac5g10894' => 'bvu', 'Eucgr.H00192' => 'egr', 'Eucgr.H00193' => 'egr', 'Eucgr.H00194' => 'egr', 'Eucgr.J01562' => 'egr', 'Eucgr.K03301' => 'egr', 'FAN02G0632' => 'fan', 'FAN05G5378' => 'fan', 'FAN09G3247' => 'fan', 'FAN12G0435' => 'fan', 'FAN12G2426' => 'fan', 'FAN14G1707' => 'fan', 'FAN14G4725' => 'fan', 'FAN15G2071' => 'fan', 'FAN17G3065' => 'fan', 'FAN19G1376' => 'fan', 'FAN20G0354' => 'fan', 'FAN20G2429' => 'fan', 'FAN20G2658' => 'fan', 'FAN24G2343' => 'fan', 'FAN27G2362' => 'fan', 'FAN28G1765' => 'fan', 'FvH4_1g16020' => 'fve', 'FvH4_2g04890' => 'fve', 'FvH4_2g22270' => 'fve', 'FvH4_4g02630' => 'fve', 'FvH4_4g02640' => 'fve', 'FvH4_6g02650' => 'fve', 'Glyma.02G140600' => 'gma', 'Glyma.03G159900' => 'gma', 'Glyma.05G234800' => 'gma', 'Glyma.07G269600' => 'gma', 'Glyma.08G042300' => 'gma', 'Glyma.10G033500' => 'gma', 'Glyma.10G185200' => 'gma', 'Glyma.17G004300' => 'gma', 'Glyma.19G161900' => 'gma', 'Glyma.20G205100' => 'gma', 'Glyma.20G205200' => 'gma', 'Gohir.A01G139101' => 'ghi', 'Gohir.A02G035600' => 'ghi', 'Gohir.A02G117901' => 'ghi', 'Gohir.A07G210100' => 'ghi', 'Gohir.A07G210200' => 'ghi', 'Gohir.A08G061100' => 'ghi', 'Gohir.A09G223000' => 'ghi', 'Gohir.A09G223100' => 'ghi', 'Gohir.A10G113900' => 'ghi', 'Gohir.A10G114000' => 'ghi', 'Gohir.D02G042300' => 'ghi', 'Gohir.D07G216100' => 'ghi', 'Gohir.D07G216200' => 'ghi', 'Gohir.D08G070400' => 'ghi', 'Gohir.D09G225000' => 'ghi', 'Gohir.D09G225100' => 'ghi', 'Gohir.D10G152300' => 'ghi', 'Gohir.D10G153200' => 'ghi', 'Gohir.D11G133701' => 'ghi', 'Gorai.004G074100' => 'gra', 'Gorai.005G046800' => 'gra', 'Gorai.006G246500' => 'gra', 'Gorai.006G246600' => 'gra', 'Gorai.007G142900' => 'gra', 'Gorai.011G171000' => 'gra', 'Gorai.011G171100' => 'gra', 'Gorai.013G104300' => 'gra', 'Gorai.013G104400' => 'gra', 'GSVIVG01000754001' => 'vvi', 'GSVIVG01000756001' => 'vvi', 'GSVIVG01010903001' => 'vvi', 'GSVIVG01017623001' => 'vvi', 'GSVIVG01018113001' => 'vvi', 'GSVIVG01018116001' => 'vvi', 'GSVIVG01018118001' => 'vvi', 'HanXRQChr03g0076211' => 'han', 'HanXRQChr03g0092431' => 'han', 'HanXRQChr03g0092441' => 'han', 'HanXRQChr03g0092591' => 'han', 'HanXRQChr03g0092671' => 'han', 'HanXRQChr03g0092681' => 'han', 'HanXRQChr03g0092691' => 'han', 'HanXRQChr03g0092701' => 'han', 'HanXRQChr03g0092721' => 'han', 'HanXRQChr03g0092731' => 'han', 'HanXRQChr04g0113681' => 'han', 'HanXRQChr10g0281371' => 'han', 'HanXRQChr11g0337141' => 'han', 'HanXRQChr13g0424521' => 'han', 'HanXRQChr13g0424531' => 'han', 'HanXRQChr13g0424541' => 'han', 'HanXRQChr16g0498221' => 'han', 'Haze_04377' => 'cav', 'Haze_11298' => 'cav', 'Haze_24547' => 'cav', 'Haze_24550' => 'cav', 'Haze_26587' => 'cav', 'Hma1.2p1_0650F.1_g195410' => 'hma', 'Hma1.2p1_0893F.1_g233470' => 'hma', 'HPP92_006508' => 'vpl', 'HPP92_024780' => 'vpl', 'Hund02688' => 'sun', 'Hund09380' => 'sun', 'Hund09381' => 'sun', 'Hund09832' => 'sun', 'Hund09833' => 'sun', 'Hund11351' => 'sun', 'Hund11513' => 'sun', 'Lalb_Chr06g0162591' => 'lal', 'Lalb_Chr06g0162601' => 'lal', 'Lalb_Chr06g0169321' => 'lal', 'Lalb_Chr09g0330951' => 'lal', 'Lalb_Chr16g0387631' => 'lal', 'Lalb_Chr21g0306241' => 'lal', 'Lalb_Chr25g0290051' => 'lal', 'Lalb_Chr25g0290061' => 'lal', 'Lalb_Chr25g0290071' => 'lal', 'Lj1g0003876' => 'lja', 'Lj1P1207T36' => 'lonja', 'Lj2C1156G12' => 'lonja', 'Lj3A793G39' => 'lonja', 'Lj3C580G2' => 'lonja', 'Lj3C780G2' => 'lonja', 'Lj3C780T4' => 'lonja', 'Lj3C793G9' => 'lonja', 'Lj4g0012960' => 'lja', 'Lj5g0021252' => 'lja', 'Lj5g0021484' => 'lja', 'Lj5g0024528' => 'lja', 'Lj6A399T12' => 'lonja', 'Lj6A656G65' => 'lonja', 'Lsat_1_v5_gn_3_125500' => 'lsa', 'Lsat_1_v5_gn_3_125540' => 'lsa', 'Lsat_1_v5_gn_5_72701' => 'lsa', 'Lsat_1_v5_gn_8_91560' => 'lsa', 'Lsat_1_v5_gn_9_9640' => 'lsa', 'Manes.01G200600' => 'mes', 'Manes.01G200700' => 'mes', 'Manes.03G168900' => 'mes', 'Manes.03G169000' => 'mes', 'Manes.05G085801' => 'mes', 'Manes.05G086200' => 'mes', 'Manes.15G036700' => 'mes', 'Manes.15G036900' => 'mes', 'Mapoly0004s0172' => 'mpo', 'Mapoly0023s0001' => 'mpo', 'Mapoly0142s0012' => 'mpo', 'MBI01_g32854_MAGBIO' => 'mbi', 'MBI11_g24427_MAGBIO' => 'mbi', 'MBI11_g47319_MAGBIO' => 'mbi', 'MCO01G433' => 'mco', 'MD00G1187800' => 'mdo', 'MD04G1226500' => 'mdo', 'MD05G1203900' => 'mdo', 'MD10G1191100' => 'mdo', 'MD12G1243500' => 'mdo', 'MD13G1207000' => 'mdo', 'MD13G1207100' => 'mdo', 'MD16G1208600' => 'mdo', 'Medtr1g050352' => 'mtr', 'Medtr1g070385' => 'mtr', 'Medtr1g070450' => 'mtr', 'Medtr1g075200' => 'mtr', 'Medtr1g075250' => 'mtr', 'Medtr1g075260' => 'mtr', 'Medtr1g475250' => 'mtr', 'Medtr4g075450' => 'mtr', 'Medtr7g096300' => 'mtr', 'Medtr8g105110' => 'mtr', 'MELO3C006470.2' => 'cme', 'MELO3C006471.2' => 'cme', 'MELO3C020772.2' => 'cme', 'MELO3C026780.2' => 'cme', 'MELO3C026781.2' => 'cme', 'Migut.D00390' => 'egut', 'Migut.G00435' => 'egut', 'Migut.G00436' => 'egut', 'Migut.G00718' => 'egut', 'MSTRG.21891' => 'ama', 'MSTRG.26910' => 'ama', 'MSTRG.4099' => 'ama', 'MSTRG.9925' => 'ama', 'Nitab4.5_0000165g0010' => 'nta', 'Nitab4.5_0000209g0180' => 'nta', 'Nitab4.5_0000244g0440' => 'nta', 'Nitab4.5_0000525g0220' => 'nta', 'Nitab4.5_0001597g0020' => 'nta', 'Nitab4.5_0001878g0040' => 'nta', 'Nitab4.5_0001878g0060' => 'nta', 'Nitab4.5_0002838g0100' => 'nta', 'Nitab4.5_0002838g0120' => 'nta', 'Nitab4.5_0004798g0030' => 'nta', 'Nitab4.5_0005420g0010' => 'nta', 'Nitab4.5_0005507g0010' => 'nta', 'Nitab4.5_0005574g0020' => 'nta', 'Nitab4.5_0005838g0010' => 'nta', 'Nitab4.5_0010580g0020' => 'nta', 'Nn1g02599' => 'nnu', 'Nn1g02608' => 'nnu', 'Nn3g17742' => 'nnu', 'Nn3g19534' => 'nnu', 'Nn3g19535' => 'nnu', 'Oeu008790.1' => 'oeu', 'Oeu008792.1' => 'oeu', 'Oeu032590.1' => 'oeu', 'Oeu035349.1' => 'oeu', 'Oeu049791.1' => 'oeu', 'Os01g0774500' => 'osa', 'Os03g0628800' => 'osa', 'Os03g0798600' => 'osa', 'Os05g0508800' => 'osa', 'Peaxi162Scf00036g02018' => 'pax', 'Peaxi162Scf00578g00032' => 'pax', 'Peaxi162Scf00578g00317' => 'pax', 'Peaxi162Scf00785g00114' => 'pax', 'Peaxi162Scf00813g00119' => 'pax', 'Peaxi162Scf00906g00227' => 'pax', 'PGR004G0875' => 'pgr', 'PGR004G2424' => 'pgr', 'PGR031G1239' => 'pgr', 'PGR031G2474' => 'pgr', 'PGR044G0423' => 'pgr', 'PGSC0003DMG400001128' => 'stu', 'PGSC0003DMG400007336' => 'stu', 'PGSC0003DMG400016318' => 'stu', 'PGSC0003DMG400016319' => 'stu', 'PGSC0003DMG400018074' => 'stu', 'Phvul.001G157700' => 'pvu', 'Phvul.002G148550' => 'pvu', 'Phvul.002G320200' => 'pvu', 'Phvul.003G089200' => 'pvu', 'Phvul.007G126000' => 'pvu', 'Phvul.007G126100' => 'pvu', 'Phvul.007G178000' => 'pvu', 'Phvul.007G178200' => 'pvu', 'Potri.002G043000' => 'ptr', 'Potri.002G043200' => 'ptr', 'Potri.003G123750' => 'ptr', 'Potri.005G055401' => 'ptr', 'Potri.005G219700' => 'ptr', 'Potri.005G220000' => 'ptr', 'Potri.008G161901' => 'ptr', 'Potri.008G162000' => 'ptr', 'Potri.008G162400' => 'ptr', 'Potri.010G076900' => 'ptr', 'Pp3c12_9180' => 'ppa', 'Pp3c13_19770' => 'ppa', 'Pp3c14_22950' => 'ppa', 'Pp3c16_12160' => 'ppa', 'Pp3c27_7820' => 'ppa', 'Pp3c2_3490' => 'ppa', 'Pp3c3_23700' => 'ppa', 'Pp3c3_36520' => 'ppa', 'Pp3c4_15250' => 'ppa', 'PRCOL_00007002' => 'pco', 'Prupe.1G030600' => 'ppe', 'Prupe.1G030700' => 'ppe', 'Prupe.6G345200' => 'ppe', 'Prupe.8G230300' => 'ppe', 'Prupe.8G230500' => 'ppe', 'Psat3g059600' => 'psa', 'Psat5g200920' => 'psa', 'Psat6g056440' => 'psa', 'Psat6g057360' => 'psa', 'Psat6g134120' => 'psa', 'Psat6g134160' => 'psa', 'Psat7g008640' => 'psa', 'Psat7g185240' => 'psa', 'PSO017G1330' => 'pso', 'PSO063G6097' => 'pso', 'PSO170G0835' => 'pso', 'PSO170G2499' => 'pso', 'PSO210G5058' => 'pso', 'PSO210G6154' => 'pso', 'PSO585G0031' => 'pso', 'PSO832G0264' => 'pso', 'PSO832G4288' => 'pso', 'QL03p027355' => 'qlo', 'QL03p027430' => 'qlo', 'QL04p081380' => 'qlo', 'QL06p015642' => 'qlo', 'QL06p015650' => 'qlo', 'QL06p015686' => 'qlo', 'QL12p042927' => 'qlo', 'QL93p1863_0035' => 'qlo', 'RcHm_v2.0_Chr3g0450581' => 'rch', 'RcHm_v2.0_Chr4g0390371' => 'rch', 'RcHm_v2.0_Chr4g0390381' => 'rch', 'RcHm_v2.0_Chr4g0390491' => 'rch', 'RcHm_v2.0_Chr4g0390501' => 'rch', 'RcHm_v2.0_Chr6g0289231' => 'rch', 'Rhsim04G0190400' => 'rsi', 'Rhsim04G0190500' => 'rsi', 'Rhsim04G0190600' => 'rsi', 'Rhsim13G0031400' => 'rsi', 'Rhsim13G0165600' => 'rsi', 'RhsimUnG0114600' => 'rsi', 'RhsimUnG0114700' => 'rsi', 'Sabra02G0034800' => 'sbr', 'Sabra02G0035100' => 'sbr', 'Sabra05G0168600' => 'sbr', 'Sabra05G0168800' => 'sbr', 'Sabra08G0123700' => 'sbr', 'Sabra10G0031900' => 'sbr', 'Sabra13G0039000' => 'sbr', 'SalBow2G0782' => 'sbo', 'SalBow2G1403' => 'sbo', 'SalBow4G0074' => 'sbo', 'SalBow4G2635' => 'sbo', 'SalBow5G3010' => 'sbo', 'Sc05g0000870' => 'sci', 'Sc05g0000890' => 'sci', 'Sc13g0005000' => 'sci', 'Sc13g0005030' => 'sci', 'Sc19g0003790' => 'sci', 'Sc19g0003800' => 'sci', 'Sed0003467' => 'sed', 'Sed0009355' => 'sed', 'Sed0009894' => 'sed', 'Sed0011972' => 'sed', 'Sed0021483' => 'sed', 'Sed0021750' => 'sed', 'Sed0026279' => 'sed', 'SEGI_05312' => 'sgi', 'SEGI_10112' => 'sgi', 'SEGI_15835' => 'sgi', 'SEGI_30386' => 'sgi', 'SEGI_34122' => 'sgi', 'SEGI_35063' => 'sgi', 'SGA_v2.0_scaffold101G29794' => 'sas', 'SGA_v2.0_scaffold1G00573' => 'sas', 'SGA_v2.0_scaffold79G25637' => 'sas', 'SGA_v2.0_scaffold88G27283' => 'sas', 'SGA_v2.0_scaffold88G27285' => 'sas', 'SGA_v2.0_scaffold88G27331' => 'sas', 'SHI09937' => 'shi', 'SMO119G0302' => 'smo', 'SMO137G0231' => 'smo', 'SMO367G1151' => 'smo', 'Solyc02g082000.3' => 'sly', 'Solyc06g031670.3' => 'sly', 'Solyc06g053810.3' => 'sly', 'Solyc07g025457.1' => 'sly', 'Solyc08g059740.1' => 'sly', 'Solyc08g059750.3' => 'sly', 'Solyc09g083370.3' => 'sly', 'Solyc12g038950.3' => 'sly', 'Sopen02g026630' => 'spe', 'Sopen06g018930' => 'spe', 'Sopen06g018940' => 'spe', 'Sopen08g009460' => 'spe', 'Sopen09g032290' => 'spe', 'Sp1g03080' => 'spa', 'Sp1g03090' => 'spa', 'Sp1g05480' => 'spa', 'Sp2g07860' => 'spa', 'Sp2g08430' => 'spa', 'Sp2g08440' => 'spa', 'Sp2g26200' => 'spa', 'Sp4g13170' => 'spa', 'Sp6g33840' => 'spa', 'SpUn1204_0010' => 'spa', 'TAR365G0908' => 'tar', 'TAR381G1270' => 'tar', 'TAR381G1651' => 'tar', 'TAR625G1131' => 'tar', 'TAR633G0962' => 'tar', 'TAR633G1729' => 'tar', 'TAR633G1864' => 'tar', 'TAR636G0221' => 'tar', 'TAR636G0314' => 'tar', 'TAR636G3202' => 'tar', 'THA.LOC104800805' => 'tha', 'THA.LOC104801096' => 'tha', 'THA.LOC104801555' => 'tha', 'THA.LOC104808491' => 'tha', 'THA.LOC104808595' => 'tha', 'THA.LOC104815985' => 'tha', 'THA.LOC104822250' => 'tha', 'THA.LOC104826071' => 'tha', 'Thecc.01G265200' => 'tca', 'Thecc.01G265300' => 'tca', 'Thecc.01G265700' => 'tca', 'Thecc.03G109100' => 'tca', 'Thecc.04G245900' => 'tca', 'Thecc.04G246000' => 'tca', 'Thhalv10003334m.g' => 'esa', 'Thhalv10005508m.g' => 'esa', 'Thhalv10005643m.g' => 'esa', 'Thhalv10007316m.g' => 'esa', 'Thhalv10009006m.g' => 'esa', 'Thhalv10009309m.g' => 'esa', 'Thhalv10014917m.g' => 'esa', 'Thhalv10014919m.g' => 'esa', 'Thhalv10015393m.g' => 'esa', 'Thhalv10016515m.g' => 'esa', 'Thhalv10029242m.g' => 'esa', 'TPR.G16654' => 'tpr', 'TPR.G20589' => 'tpr', 'TPR.G23029' => 'tpr', 'TPR.G27731' => 'tpr', 'TPR.G28889' => 'tpr', 'TPR.G28899' => 'tpr', 'TPR.G30846' => 'tpr', 'TPR.G5452' => 'tpr', 'TPR.G5713' => 'tpr', 'TPR.G9046' => 'tpr', 'TPR.G9061' => 'tpr', 'TWI09G1075' => 'twi', 'TWI12G0806' => 'twi', 'TWI18G0108' => 'twi', 'TWI53G1361' => 'twi', 'TWI73G0185' => 'twi', 'TWI73G0427' => 'twi', 'unitig_37.g12001' => 'ugi', 'unitig_747.g21660' => 'ugi', 'unitig_748.g7232' => 'ugi', 'unitig_748.g7315' => 'ugi', 'unitig_85.g27262' => 'ugi', 'unitig_92.g28220' => 'ugi', 'vmacro02632' => 'vma', 'vmacro08410' => 'vma', 'vmacro08411' => 'vma', 'vmacro15407' => 'vma', 'VMungo0251G3619' => 'vmu', 'VMungo0720G1204' => 'vmu', 'VMungo0720G1918' => 'vmu', 'VMungo0720G2387' => 'vmu', 'VMungo0720G2961' => 'vmu', 'VMungo1215G2154' => 'vmu', 'VMungo1383G2411' => 'vmu', 'Zm00001eb051130' => 'zma', 'Zm00001eb116830' => 'zma', 'Zm00001eb116850' => 'zma', 'Zm00001eb151740' => 'zma', 'Zm00001eb292360' => 'zma', 'Zm00001eb301640' => 'zma' ) $gf_id = 'HOM05D000856' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000856' ) $data_identifier = 'HOM05D000856' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 13, 'ath' => (int) 10, 'atr' => (int) 1, 'acertr' => (int) 8, 'cqu' => (int) 6, 'bca' => (int) 21, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 11, 'car' => (int) 9, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 8, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 5, 'fan' => (int) 16, 'fve' => (int) 6, 'gma' => (int) 11, 'ghi' => (int) 19, 'gra' => (int) 9, 'vvi' => (int) 7, 'han' => (int) 17, 'cav' => (int) 5, 'hma' => (int) 2, 'vpl' => (int) 2, 'sun' => (int) 7, 'lal' => (int) 9, 'lja' => (int) 5, 'lonja' => (int) 9, 'lsa' => (int) 5, 'mes' => (int) 8, 'mpo' => (int) 3, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 10, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 15, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 9, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 9, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 6, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 5, 'spa' => (int) 10, 'tar' => (int) 10, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 11, 'tpr' => (int) 11, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 4, 'vmu' => (int) 7, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb301640' $species_info = array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ) $local_species = 'amhyb' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000856', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p00010' => 'bna', 'A03p04160' => 'bna', 'A03p17160' => 'bna', 'A04p23370' => 'bna', 'A05p14860' => 'bna', 'A08p37020' => 'bna', 'A09p08050' => 'bna', 'A09p66800' => 'bna', 'A09p67940' => 'bna', 'A10p02680' => 'bna', 'A10p05320' => 'bna', 'Aa31LG1G20560' => 'aar', 'Aa31LG1G20610' => 'aar', 'Aa31LG1G7810' => 'aar', 'Aa31LG5G3590' => 'aar', 'Aa31LG5G6140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3819' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4683' => 'aag', 'Actinidia04480' => 'ach', 'Actinidia05466' => 'ach', 'Actinidia08445' => 'ach', 'Actinidia21170' => 'ach', 'Actinidia24812' => 'ach', 'Actinidia24951' => 'ach', 'Actinidia40088' => 'ach', 'Ah.02g111660' => 'amhyb', 'Ah.11g048900' => 'amhyb', 'Ah.11g049910' => 'amhyb', 'AL1G13870' => 'aly', 'AL1G13880' => 'aly', 'AL1G16760' => 'aly', 'AL390U10020' => 'aly', 'AL4G25520' => 'aly', 'AL6G19890' => 'aly', 'AL6G19900' => 'aly', 'AL6G19910' => 'aly', 'AL8G40100' => 'aly', 'Aqoxy2G03562' => 'aox', 'Aqoxy5G00316' => 'aox', 'Aqoxy5G00926' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1628KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1H403S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2FU6SJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.882I6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8YRY2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YN1SN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AF70II' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZA8L1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F916KL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHRD8H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KTZ8QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S22EMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8M29T' => 'arhy', 'AT1G04270' => 'ath', 'AT1G04280' => 'ath', 'AT1G06750' => 'ath', 'AT1G33850' => 'ath', 'AT2G30630' => 'ath', 'AT5G09490' => 'ath', 'AT5G09500' => 'ath', 'AT5G09510' => 'ath', 'AT5G43640' => 'ath', 'AT5G63070' => 'ath', 'ATR0605G315' => 'atr', 'Atru.chr11.175' => 'acertr', 'Atru.chr11.653' => 'acertr', 'Atru.chr3.1616' => 'acertr', 'Atru.chr4.2230' => 'acertr', 'Atru.chr4.2232' => 'acertr', 'Atru.chr5.1598' => 'acertr', 'Atru.chr5.1600' => 'acertr', 'Atru.chr5.2188' => 'acertr', 'AUR62008326' => 'cqu', 'AUR62011922' => 'cqu', 'AUR62011924' => 'cqu', 'AUR62021771' => 'cqu', 'AUR62032237' => 'cqu', 'AUR62032240' => 'cqu', 'BcaB01g05572' => 'bca', 'BcaB02g10337' => 'bca', 'BcaB04g19944' => 'bca', 'BcaB05g21548' => 'bca', 'BcaB05g21549' => 'bca', 'BcaB05g23227' => 'bca', 'BcaB06g26256' => 'bca', 'BcaB06g26257' => 'bca', 'BcaB06g28379' => 'bca', 'BcaC02g11159' => 'bca', 'BcaC03g13258' => 'bca', 'BcaC03g13259' => 'bca', 'BcaC05g24456' => 'bca', 'BcaC05g24457' => 'bca', 'BcaC07g36922' => 'bca', 'BcaC07g36923' => 'bca', 'BcaC07g42050' => 'bca', 'BcaC07g42176' => 'bca', 'BcaC07g42195' => 'bca', 'BcaC07g42196' => 'bca', 'BcaNung06674' => 'bca', 'BolC2t06351H' => 'bol', 'BolC2t06352H' => 'bol', 'BolC3t12993H' => 'bol', 'BolC4t23525H' => 'bol', 'BolC4t27475H' => 'bol', 'BolC5t29025H' => 'bol', 'BolC5t29026H' => 'bol', 'BolC8t46898H' => 'bol', 'BolC8t46899H' => 'bol', 'BolC8t52630H' => 'bol', 'BolC8t52765H' => 'bol', 'BolC9t53824H' => 'bol', 'BraA03t09760Z' => 'bra', 'BraA03t10990Z' => 'bra', 'BraA05t20413Z' => 'bra', 'BraA08t35602Z' => 'bra', 'BraA09t36458Z' => 'bra', 'BraA09t42018Z' => 'bra', 'BraA09t42129Z' => 'bra', 'BraA10t42536Z' => 'bra', 'BraA10t42537Z' => 'bra', 'C01p10690' => 'bna', 'C02p03890' => 'bna', 'C02p03900' => 'bna', 'C03p04620' => 'bna', 'C04p19870' => 'bna', 'C04p59670' => 'bna', 'C05p02460' => 'bna', 'C05p02470' => 'bna', 'C08p00980' => 'bna', 'C08p00990' => 'bna', 'C08p51030' => 'bna', 'C08p52360' => 'bna', 'C09p09120' => 'bna', 'CAN.G19.15' => 'can', 'CAN.G251.10' => 'can', 'CAN.G251.9' => 'can', 'CAN.G398.24' => 'can', 'CAN.G410.32' => 'can', 'CAN.G881.2' => 'can', 'CANSAT01G3025' => 'cansat', 'CANSAT78G1211' => 'cansat', 'CANSAT78G1218' => 'cansat', 'CANSAT78G1521' => 'cansat', 'CANSAT78G1670' => 'cansat', 'CARHR003600' => 'chi', 'CARHR003610' => 'chi', 'CARHR006290' => 'chi', 'CARHR006430' => 'chi', 'CARHR124110' => 'chi', 'CARHR203870' => 'chi', 'CARHR203880' => 'chi', 'CARHR203890' => 'chi', 'CARHR276880' => 'chi', 'Carub.0001s0346' => 'cru', 'Carub.0001s0347' => 'cru', 'Carub.0001s0607' => 'cru', 'Carub.0003s2768' => 'cru', 'Carub.0003s2769' => 'cru', 'Carub.0004s1178' => 'cru', 'Carub.0006s0806' => 'cru', 'Carub.0006s0807' => 'cru', 'Carub.0006s0808' => 'cru', 'Carub.0008s0501' => 'cru', 'Carub.0008s2379' => 'cru', 'Ca_08655_v3' => 'car', 'Ca_08922_v3' => 'car', 'Ca_08923_v3' => 'car', 'Ca_09119_v3' => 'car', 'Ca_09703_v3' => 'car', 'Ca_09705_v3' => 'car', 'Ca_09835_v3' => 'car', 'Ca_26403_v3' => 'car', 'Ca_30719_v3' => 'car', 'CBR_g17958' => 'cbr', 'CBR_g40516' => 'cbr', 'Cc00_g05350' => 'ccan', 'Cc01_g18690' => 'ccan', 'Cc03_g04830' => 'ccan', 'Cc03_g04850' => 'ccan', 'CDE02G4469' => 'cde', 'CDE06G0883' => 'cde', 'CDE06G1295' => 'cde', 'CDE06G1390' => 'cde', 'CDE07G0584' => 'cde', 'CDE07G1084' => 'cde', 'CDE08G1259' => 'cde', 'Cfa002341' => 'cfa', 'Cfa024337' => 'cfa', 'Ciclev10004749m.g' => 'ccl', 'Ciclev10006127m.g' => 'ccl', 'Ciclev10019720m.g' => 'ccl', 'Ciclev10022652m.g' => 'ccl', 'CiPaw.01G190400' => 'cil', 'CiPaw.01G190500' => 'cil', 'CiPaw.02G116400' => 'cil', 'CiPaw.02G116500' => 'cil', 'CiPaw.04G183000' => 'cil', 'CiPaw.04G183300' => 'cil', 'ClCG05G004610' => 'cla', 'ClCG05G004620' => 'cla', 'ClCG06G006730' => 'cla', 'ClCG06G006740' => 'cla', 'ClCG11G003690' => 'cla', 'COL.COLO4_08276' => 'col', 'COL.COLO4_08277' => 'col', 'COL.COLO4_15787' => 'col', 'COL.COLO4_15789' => 'col', 'Cpa.g.c44815' => 'cpa', 'Cpa.g.sc52.144' => 'cpa', 'Cpa.g.sc58.46' => 'cpa', 'Cpa.g.sc58.47' => 'cpa', 'Cre08.g360900' => 'cre', 'CsaV3_2G013030' => 'csa', 'CsaV3_2G013050' => 'csa', 'CsaV3_2G015620' => 'csa', 'CsaV3_3G012590' => 'csa', 'CsaV3_3G012600' => 'csa', 'CSS0001641' => 'camsi', 'CSS0008310' => 'camsi', 'CSS0013011' => 'camsi', 'CSS0017147' => 'camsi', 'CSS0022970' => 'camsi', 'CSS0025655' => 'camsi', 'CSS0028665' => 'camsi', 'CSS0029117' => 'camsi', 'CSS0032024' => 'camsi', 'CSS0039681' => 'camsi', 'CSS0046516' => 'camsi', 'CSS0050307' => 'camsi', 'DCAR_005871' => 'dca', 'DCAR_007342' => 'dca', 'DCAR_024228' => 'dca', 'DCAR_027277' => 'dca', 'DCAR_030718' => 'dca', 'Dinv20287' => 'din', 'Dinv22461' => 'din', 'Dinv22464' => 'din', 'Dinv29912' => 'din', 'Dinv29913' => 'din', 'Dinv34580' => 'din', 'Dinv34582' => 'din', 'Dinv44632' => 'din', 'Duzib052G0266' => 'dzi', 'Duzib133G0907' => 'dzi', 'Duzib133G1034' => 'dzi', 'Duzib138G0207' => 'dzi', 'Duzib138G0491' => 'dzi', 'Duzib151G0812' => 'dzi', 'Duzib151G1166' => 'dzi', 'Duzib168G0192' => 'dzi', 'Duzib211G0077' => 'dzi', 'Duzib212G0429' => 'dzi', 'Duzib212G0472' => 'dzi', 'ECA233G2617' => 'eca', 'ECA236G4188' => 'eca', 'ECA240G0936' => 'eca', 'ECA240G1129' => 'eca', 'ECA247G0623' => 'eca', 'EL10Ac5g10451' => 'bvu', 'EL10Ac5g10453' => 'bvu', 'EL10Ac5g10894' => 'bvu', 'Eucgr.H00192' => 'egr', 'Eucgr.H00193' => 'egr', 'Eucgr.H00194' => 'egr', 'Eucgr.J01562' => 'egr', 'Eucgr.K03301' => 'egr', 'FAN02G0632' => 'fan', 'FAN05G5378' => 'fan', 'FAN09G3247' => 'fan', 'FAN12G0435' => 'fan', 'FAN12G2426' => 'fan', 'FAN14G1707' => 'fan', 'FAN14G4725' => 'fan', 'FAN15G2071' => 'fan', 'FAN17G3065' => 'fan', 'FAN19G1376' => 'fan', 'FAN20G0354' => 'fan', 'FAN20G2429' => 'fan', 'FAN20G2658' => 'fan', 'FAN24G2343' => 'fan', 'FAN27G2362' => 'fan', 'FAN28G1765' => 'fan', 'FvH4_1g16020' => 'fve', 'FvH4_2g04890' => 'fve', 'FvH4_2g22270' => 'fve', 'FvH4_4g02630' => 'fve', 'FvH4_4g02640' => 'fve', 'FvH4_6g02650' => 'fve', 'Glyma.02G140600' => 'gma', 'Glyma.03G159900' => 'gma', 'Glyma.05G234800' => 'gma', 'Glyma.07G269600' => 'gma', 'Glyma.08G042300' => 'gma', 'Glyma.10G033500' => 'gma', 'Glyma.10G185200' => 'gma', 'Glyma.17G004300' => 'gma', 'Glyma.19G161900' => 'gma', 'Glyma.20G205100' => 'gma', 'Glyma.20G205200' => 'gma', 'Gohir.A01G139101' => 'ghi', 'Gohir.A02G035600' => 'ghi', 'Gohir.A02G117901' => 'ghi', 'Gohir.A07G210100' => 'ghi', 'Gohir.A07G210200' => 'ghi', 'Gohir.A08G061100' => 'ghi', 'Gohir.A09G223000' => 'ghi', 'Gohir.A09G223100' => 'ghi', 'Gohir.A10G113900' => 'ghi', 'Gohir.A10G114000' => 'ghi', 'Gohir.D02G042300' => 'ghi', 'Gohir.D07G216100' => 'ghi', 'Gohir.D07G216200' => 'ghi', 'Gohir.D08G070400' => 'ghi', 'Gohir.D09G225000' => 'ghi', 'Gohir.D09G225100' => 'ghi', 'Gohir.D10G152300' => 'ghi', 'Gohir.D10G153200' => 'ghi', 'Gohir.D11G133701' => 'ghi', 'Gorai.004G074100' => 'gra', 'Gorai.005G046800' => 'gra', 'Gorai.006G246500' => 'gra', 'Gorai.006G246600' => 'gra', 'Gorai.007G142900' => 'gra', 'Gorai.011G171000' => 'gra', 'Gorai.011G171100' => 'gra', 'Gorai.013G104300' => 'gra', 'Gorai.013G104400' => 'gra', 'GSVIVG01000754001' => 'vvi', 'GSVIVG01000756001' => 'vvi', 'GSVIVG01010903001' => 'vvi', 'GSVIVG01017623001' => 'vvi', 'GSVIVG01018113001' => 'vvi', 'GSVIVG01018116001' => 'vvi', 'GSVIVG01018118001' => 'vvi', 'HanXRQChr03g0076211' => 'han', 'HanXRQChr03g0092431' => 'han', 'HanXRQChr03g0092441' => 'han', 'HanXRQChr03g0092591' => 'han', 'HanXRQChr03g0092671' => 'han', 'HanXRQChr03g0092681' => 'han', 'HanXRQChr03g0092691' => 'han', 'HanXRQChr03g0092701' => 'han', 'HanXRQChr03g0092721' => 'han', 'HanXRQChr03g0092731' => 'han', 'HanXRQChr04g0113681' => 'han', 'HanXRQChr10g0281371' => 'han', 'HanXRQChr11g0337141' => 'han', 'HanXRQChr13g0424521' => 'han', 'HanXRQChr13g0424531' => 'han', 'HanXRQChr13g0424541' => 'han', 'HanXRQChr16g0498221' => 'han', 'Haze_04377' => 'cav', 'Haze_11298' => 'cav', 'Haze_24547' => 'cav', 'Haze_24550' => 'cav', 'Haze_26587' => 'cav', 'Hma1.2p1_0650F.1_g195410' => 'hma', 'Hma1.2p1_0893F.1_g233470' => 'hma', 'HPP92_006508' => 'vpl', 'HPP92_024780' => 'vpl', 'Hund02688' => 'sun', 'Hund09380' => 'sun', 'Hund09381' => 'sun', 'Hund09832' => 'sun', 'Hund09833' => 'sun', 'Hund11351' => 'sun', 'Hund11513' => 'sun', 'Lalb_Chr06g0162591' => 'lal', 'Lalb_Chr06g0162601' => 'lal', 'Lalb_Chr06g0169321' => 'lal', 'Lalb_Chr09g0330951' => 'lal', 'Lalb_Chr16g0387631' => 'lal', 'Lalb_Chr21g0306241' => 'lal', 'Lalb_Chr25g0290051' => 'lal', 'Lalb_Chr25g0290061' => 'lal', 'Lalb_Chr25g0290071' => 'lal', 'Lj1g0003876' => 'lja', 'Lj1P1207T36' => 'lonja', 'Lj2C1156G12' => 'lonja', 'Lj3A793G39' => 'lonja', 'Lj3C580G2' => 'lonja', 'Lj3C780G2' => 'lonja', 'Lj3C780T4' => 'lonja', 'Lj3C793G9' => 'lonja', 'Lj4g0012960' => 'lja', 'Lj5g0021252' => 'lja', 'Lj5g0021484' => 'lja', 'Lj5g0024528' => 'lja', 'Lj6A399T12' => 'lonja', 'Lj6A656G65' => 'lonja', 'Lsat_1_v5_gn_3_125500' => 'lsa', 'Lsat_1_v5_gn_3_125540' => 'lsa', 'Lsat_1_v5_gn_5_72701' => 'lsa', 'Lsat_1_v5_gn_8_91560' => 'lsa', 'Lsat_1_v5_gn_9_9640' => 'lsa', 'Manes.01G200600' => 'mes', 'Manes.01G200700' => 'mes', 'Manes.03G168900' => 'mes', 'Manes.03G169000' => 'mes', 'Manes.05G085801' => 'mes', 'Manes.05G086200' => 'mes', 'Manes.15G036700' => 'mes', 'Manes.15G036900' => 'mes', 'Mapoly0004s0172' => 'mpo', 'Mapoly0023s0001' => 'mpo', 'Mapoly0142s0012' => 'mpo', 'MBI01_g32854_MAGBIO' => 'mbi', 'MBI11_g24427_MAGBIO' => 'mbi', 'MBI11_g47319_MAGBIO' => 'mbi', 'MCO01G433' => 'mco', 'MD00G1187800' => 'mdo', 'MD04G1226500' => 'mdo', 'MD05G1203900' => 'mdo', 'MD10G1191100' => 'mdo', 'MD12G1243500' => 'mdo', 'MD13G1207000' => 'mdo', 'MD13G1207100' => 'mdo', 'MD16G1208600' => 'mdo', 'Medtr1g050352' => 'mtr', 'Medtr1g070385' => 'mtr', 'Medtr1g070450' => 'mtr', 'Medtr1g075200' => 'mtr', 'Medtr1g075250' => 'mtr', 'Medtr1g075260' => 'mtr', 'Medtr1g475250' => 'mtr', 'Medtr4g075450' => 'mtr', 'Medtr7g096300' => 'mtr', 'Medtr8g105110' => 'mtr', 'MELO3C006470.2' => 'cme', 'MELO3C006471.2' => 'cme', 'MELO3C020772.2' => 'cme', 'MELO3C026780.2' => 'cme', 'MELO3C026781.2' => 'cme', 'Migut.D00390' => 'egut', 'Migut.G00435' => 'egut', 'Migut.G00436' => 'egut', 'Migut.G00718' => 'egut', 'MSTRG.21891' => 'ama', 'MSTRG.26910' => 'ama', 'MSTRG.4099' => 'ama', 'MSTRG.9925' => 'ama', 'Nitab4.5_0000165g0010' => 'nta', 'Nitab4.5_0000209g0180' => 'nta', 'Nitab4.5_0000244g0440' => 'nta', 'Nitab4.5_0000525g0220' => 'nta', 'Nitab4.5_0001597g0020' => 'nta', 'Nitab4.5_0001878g0040' => 'nta', 'Nitab4.5_0001878g0060' => 'nta', 'Nitab4.5_0002838g0100' => 'nta', 'Nitab4.5_0002838g0120' => 'nta', 'Nitab4.5_0004798g0030' => 'nta', 'Nitab4.5_0005420g0010' => 'nta', 'Nitab4.5_0005507g0010' => 'nta', 'Nitab4.5_0005574g0020' => 'nta', 'Nitab4.5_0005838g0010' => 'nta', 'Nitab4.5_0010580g0020' => 'nta', 'Nn1g02599' => 'nnu', 'Nn1g02608' => 'nnu', 'Nn3g17742' => 'nnu', 'Nn3g19534' => 'nnu', 'Nn3g19535' => 'nnu', 'Oeu008790.1' => 'oeu', 'Oeu008792.1' => 'oeu', 'Oeu032590.1' => 'oeu', 'Oeu035349.1' => 'oeu', 'Oeu049791.1' => 'oeu', 'Os01g0774500' => 'osa', 'Os03g0628800' => 'osa', 'Os03g0798600' => 'osa', 'Os05g0508800' => 'osa', 'Peaxi162Scf00036g02018' => 'pax', 'Peaxi162Scf00578g00032' => 'pax', 'Peaxi162Scf00578g00317' => 'pax', 'Peaxi162Scf00785g00114' => 'pax', 'Peaxi162Scf00813g00119' => 'pax', 'Peaxi162Scf00906g00227' => 'pax', 'PGR004G0875' => 'pgr', 'PGR004G2424' => 'pgr', 'PGR031G1239' => 'pgr', 'PGR031G2474' => 'pgr', 'PGR044G0423' => 'pgr', 'PGSC0003DMG400001128' => 'stu', 'PGSC0003DMG400007336' => 'stu', 'PGSC0003DMG400016318' => 'stu', 'PGSC0003DMG400016319' => 'stu', 'PGSC0003DMG400018074' => 'stu', 'Phvul.001G157700' => 'pvu', 'Phvul.002G148550' => 'pvu', 'Phvul.002G320200' => 'pvu', 'Phvul.003G089200' => 'pvu', 'Phvul.007G126000' => 'pvu', 'Phvul.007G126100' => 'pvu', 'Phvul.007G178000' => 'pvu', 'Phvul.007G178200' => 'pvu', 'Potri.002G043000' => 'ptr', 'Potri.002G043200' => 'ptr', 'Potri.003G123750' => 'ptr', 'Potri.005G055401' => 'ptr', 'Potri.005G219700' => 'ptr', 'Potri.005G220000' => 'ptr', 'Potri.008G161901' => 'ptr', 'Potri.008G162000' => 'ptr', 'Potri.008G162400' => 'ptr', 'Potri.010G076900' => 'ptr', 'Pp3c12_9180' => 'ppa', 'Pp3c13_19770' => 'ppa', 'Pp3c14_22950' => 'ppa', 'Pp3c16_12160' => 'ppa', 'Pp3c27_7820' => 'ppa', 'Pp3c2_3490' => 'ppa', 'Pp3c3_23700' => 'ppa', 'Pp3c3_36520' => 'ppa', 'Pp3c4_15250' => 'ppa', 'PRCOL_00007002' => 'pco', 'Prupe.1G030600' => 'ppe', 'Prupe.1G030700' => 'ppe', 'Prupe.6G345200' => 'ppe', 'Prupe.8G230300' => 'ppe', 'Prupe.8G230500' => 'ppe', 'Psat3g059600' => 'psa', 'Psat5g200920' => 'psa', 'Psat6g056440' => 'psa', 'Psat6g057360' => 'psa', 'Psat6g134120' => 'psa', 'Psat6g134160' => 'psa', 'Psat7g008640' => 'psa', 'Psat7g185240' => 'psa', 'PSO017G1330' => 'pso', 'PSO063G6097' => 'pso', 'PSO170G0835' => 'pso', 'PSO170G2499' => 'pso', 'PSO210G5058' => 'pso', 'PSO210G6154' => 'pso', 'PSO585G0031' => 'pso', 'PSO832G0264' => 'pso', 'PSO832G4288' => 'pso', 'QL03p027355' => 'qlo', 'QL03p027430' => 'qlo', 'QL04p081380' => 'qlo', 'QL06p015642' => 'qlo', 'QL06p015650' => 'qlo', 'QL06p015686' => 'qlo', 'QL12p042927' => 'qlo', 'QL93p1863_0035' => 'qlo', 'RcHm_v2.0_Chr3g0450581' => 'rch', 'RcHm_v2.0_Chr4g0390371' => 'rch', 'RcHm_v2.0_Chr4g0390381' => 'rch', 'RcHm_v2.0_Chr4g0390491' => 'rch', 'RcHm_v2.0_Chr4g0390501' => 'rch', 'RcHm_v2.0_Chr6g0289231' => 'rch', 'Rhsim04G0190400' => 'rsi', 'Rhsim04G0190500' => 'rsi', 'Rhsim04G0190600' => 'rsi', 'Rhsim13G0031400' => 'rsi', 'Rhsim13G0165600' => 'rsi', 'RhsimUnG0114600' => 'rsi', 'RhsimUnG0114700' => 'rsi', 'Sabra02G0034800' => 'sbr', 'Sabra02G0035100' => 'sbr', 'Sabra05G0168600' => 'sbr', 'Sabra05G0168800' => 'sbr', 'Sabra08G0123700' => 'sbr', 'Sabra10G0031900' => 'sbr', 'Sabra13G0039000' => 'sbr', 'SalBow2G0782' => 'sbo', 'SalBow2G1403' => 'sbo', 'SalBow4G0074' => 'sbo', 'SalBow4G2635' => 'sbo', 'SalBow5G3010' => 'sbo', 'Sc05g0000870' => 'sci', 'Sc05g0000890' => 'sci', 'Sc13g0005000' => 'sci', 'Sc13g0005030' => 'sci', 'Sc19g0003790' => 'sci', 'Sc19g0003800' => 'sci', 'Sed0003467' => 'sed', 'Sed0009355' => 'sed', 'Sed0009894' => 'sed', 'Sed0011972' => 'sed', 'Sed0021483' => 'sed', 'Sed0021750' => 'sed', 'Sed0026279' => 'sed', 'SEGI_05312' => 'sgi', 'SEGI_10112' => 'sgi', 'SEGI_15835' => 'sgi', 'SEGI_30386' => 'sgi', 'SEGI_34122' => 'sgi', 'SEGI_35063' => 'sgi', 'SGA_v2.0_scaffold101G29794' => 'sas', 'SGA_v2.0_scaffold1G00573' => 'sas', 'SGA_v2.0_scaffold79G25637' => 'sas', 'SGA_v2.0_scaffold88G27283' => 'sas', 'SGA_v2.0_scaffold88G27285' => 'sas', 'SGA_v2.0_scaffold88G27331' => 'sas', 'SHI09937' => 'shi', 'SMO119G0302' => 'smo', 'SMO137G0231' => 'smo', 'SMO367G1151' => 'smo', 'Solyc02g082000.3' => 'sly', 'Solyc06g031670.3' => 'sly', 'Solyc06g053810.3' => 'sly', 'Solyc07g025457.1' => 'sly', 'Solyc08g059740.1' => 'sly', 'Solyc08g059750.3' => 'sly', 'Solyc09g083370.3' => 'sly', 'Solyc12g038950.3' => 'sly', 'Sopen02g026630' => 'spe', 'Sopen06g018930' => 'spe', 'Sopen06g018940' => 'spe', 'Sopen08g009460' => 'spe', 'Sopen09g032290' => 'spe', 'Sp1g03080' => 'spa', 'Sp1g03090' => 'spa', 'Sp1g05480' => 'spa', 'Sp2g07860' => 'spa', 'Sp2g08430' => 'spa', 'Sp2g08440' => 'spa', 'Sp2g26200' => 'spa', 'Sp4g13170' => 'spa', 'Sp6g33840' => 'spa', 'SpUn1204_0010' => 'spa', 'TAR365G0908' => 'tar', 'TAR381G1270' => 'tar', 'TAR381G1651' => 'tar', 'TAR625G1131' => 'tar', 'TAR633G0962' => 'tar', 'TAR633G1729' => 'tar', 'TAR633G1864' => 'tar', 'TAR636G0221' => 'tar', 'TAR636G0314' => 'tar', 'TAR636G3202' => 'tar', 'THA.LOC104800805' => 'tha', 'THA.LOC104801096' => 'tha', 'THA.LOC104801555' => 'tha', 'THA.LOC104808491' => 'tha', 'THA.LOC104808595' => 'tha', 'THA.LOC104815985' => 'tha', 'THA.LOC104822250' => 'tha', 'THA.LOC104826071' => 'tha', 'Thecc.01G265200' => 'tca', 'Thecc.01G265300' => 'tca', 'Thecc.01G265700' => 'tca', 'Thecc.03G109100' => 'tca', 'Thecc.04G245900' => 'tca', 'Thecc.04G246000' => 'tca', 'Thhalv10003334m.g' => 'esa', 'Thhalv10005508m.g' => 'esa', 'Thhalv10005643m.g' => 'esa', 'Thhalv10007316m.g' => 'esa', 'Thhalv10009006m.g' => 'esa', 'Thhalv10009309m.g' => 'esa', 'Thhalv10014917m.g' => 'esa', 'Thhalv10014919m.g' => 'esa', 'Thhalv10015393m.g' => 'esa', 'Thhalv10016515m.g' => 'esa', 'Thhalv10029242m.g' => 'esa', 'TPR.G16654' => 'tpr', 'TPR.G20589' => 'tpr', 'TPR.G23029' => 'tpr', 'TPR.G27731' => 'tpr', 'TPR.G28889' => 'tpr', 'TPR.G28899' => 'tpr', 'TPR.G30846' => 'tpr', 'TPR.G5452' => 'tpr', 'TPR.G5713' => 'tpr', 'TPR.G9046' => 'tpr', 'TPR.G9061' => 'tpr', 'TWI09G1075' => 'twi', 'TWI12G0806' => 'twi', 'TWI18G0108' => 'twi', 'TWI53G1361' => 'twi', 'TWI73G0185' => 'twi', 'TWI73G0427' => 'twi', 'unitig_37.g12001' => 'ugi', 'unitig_747.g21660' => 'ugi', 'unitig_748.g7232' => 'ugi', 'unitig_748.g7315' => 'ugi', 'unitig_85.g27262' => 'ugi', 'unitig_92.g28220' => 'ugi', 'vmacro02632' => 'vma', 'vmacro08410' => 'vma', 'vmacro08411' => 'vma', 'vmacro15407' => 'vma', 'VMungo0251G3619' => 'vmu', 'VMungo0720G1204' => 'vmu', 'VMungo0720G1918' => 'vmu', 'VMungo0720G2387' => 'vmu', 'VMungo0720G2961' => 'vmu', 'VMungo1215G2154' => 'vmu', 'VMungo1383G2411' => 'vmu', 'Zm00001eb051130' => 'zma', 'Zm00001eb116830' => 'zma', 'Zm00001eb116850' => 'zma', 'Zm00001eb151740' => 'zma', 'Zm00001eb292360' => 'zma', 'Zm00001eb301640' => 'zma' ), 'gf_id' => 'HOM05D000856', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000856' ), 'data_identifier' => 'HOM05D000856', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000856', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p00010' => 'bna', 'A03p04160' => 'bna', 'A03p17160' => 'bna', 'A04p23370' => 'bna', 'A05p14860' => 'bna', 'A08p37020' => 'bna', 'A09p08050' => 'bna', 'A09p66800' => 'bna', 'A09p67940' => 'bna', 'A10p02680' => 'bna', 'A10p05320' => 'bna', 'Aa31LG1G20560' => 'aar', 'Aa31LG1G20610' => 'aar', 'Aa31LG1G7810' => 'aar', 'Aa31LG5G3590' => 'aar', 'Aa31LG5G6140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3819' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4683' => 'aag', 'Actinidia04480' => 'ach', 'Actinidia05466' => 'ach', 'Actinidia08445' => 'ach', 'Actinidia21170' => 'ach', 'Actinidia24812' => 'ach', 'Actinidia24951' => 'ach', 'Actinidia40088' => 'ach', 'Ah.02g111660' => 'amhyb', 'Ah.11g048900' => 'amhyb', 'Ah.11g049910' => 'amhyb', 'AL1G13870' => 'aly', 'AL1G13880' => 'aly', 'AL1G16760' => 'aly', 'AL390U10020' => 'aly', 'AL4G25520' => 'aly', 'AL6G19890' => 'aly', 'AL6G19900' => 'aly', 'AL6G19910' => 'aly', 'AL8G40100' => 'aly', 'Aqoxy2G03562' => 'aox', 'Aqoxy5G00316' => 'aox', 'Aqoxy5G00926' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1628KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1H403S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2FU6SJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.882I6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8YRY2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YN1SN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AF70II' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZA8L1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F916KL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHRD8H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KTZ8QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S22EMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8M29T' => 'arhy', 'AT1G04270' => 'ath', 'AT1G04280' => 'ath', 'AT1G06750' => 'ath', 'AT1G33850' => 'ath', 'AT2G30630' => 'ath', 'AT5G09490' => 'ath', 'AT5G09500' => 'ath', 'AT5G09510' => 'ath', 'AT5G43640' => 'ath', 'AT5G63070' => 'ath', 'ATR0605G315' => 'atr', 'Atru.chr11.175' => 'acertr', 'Atru.chr11.653' => 'acertr', 'Atru.chr3.1616' => 'acertr', 'Atru.chr4.2230' => 'acertr', 'Atru.chr4.2232' => 'acertr', 'Atru.chr5.1598' => 'acertr', 'Atru.chr5.1600' => 'acertr', 'Atru.chr5.2188' => 'acertr', 'AUR62008326' => 'cqu', 'AUR62011922' => 'cqu', 'AUR62011924' => 'cqu', 'AUR62021771' => 'cqu', 'AUR62032237' => 'cqu', 'AUR62032240' => 'cqu', 'BcaB01g05572' => 'bca', 'BcaB02g10337' => 'bca', 'BcaB04g19944' => 'bca', 'BcaB05g21548' => 'bca', 'BcaB05g21549' => 'bca', 'BcaB05g23227' => 'bca', 'BcaB06g26256' => 'bca', 'BcaB06g26257' => 'bca', 'BcaB06g28379' => 'bca', 'BcaC02g11159' => 'bca', 'BcaC03g13258' => 'bca', 'BcaC03g13259' => 'bca', 'BcaC05g24456' => 'bca', 'BcaC05g24457' => 'bca', 'BcaC07g36922' => 'bca', 'BcaC07g36923' => 'bca', 'BcaC07g42050' => 'bca', 'BcaC07g42176' => 'bca', 'BcaC07g42195' => 'bca', 'BcaC07g42196' => 'bca', 'BcaNung06674' => 'bca', 'BolC2t06351H' => 'bol', 'BolC2t06352H' => 'bol', 'BolC3t12993H' => 'bol', 'BolC4t23525H' => 'bol', 'BolC4t27475H' => 'bol', 'BolC5t29025H' => 'bol', 'BolC5t29026H' => 'bol', 'BolC8t46898H' => 'bol', 'BolC8t46899H' => 'bol', 'BolC8t52630H' => 'bol', 'BolC8t52765H' => 'bol', 'BolC9t53824H' => 'bol', 'BraA03t09760Z' => 'bra', 'BraA03t10990Z' => 'bra', 'BraA05t20413Z' => 'bra', 'BraA08t35602Z' => 'bra', 'BraA09t36458Z' => 'bra', 'BraA09t42018Z' => 'bra', 'BraA09t42129Z' => 'bra', 'BraA10t42536Z' => 'bra', 'BraA10t42537Z' => 'bra', 'C01p10690' => 'bna', 'C02p03890' => 'bna', 'C02p03900' => 'bna', 'C03p04620' => 'bna', 'C04p19870' => 'bna', 'C04p59670' => 'bna', 'C05p02460' => 'bna', 'C05p02470' => 'bna', 'C08p00980' => 'bna', 'C08p00990' => 'bna', 'C08p51030' => 'bna', 'C08p52360' => 'bna', 'C09p09120' => 'bna', 'CAN.G19.15' => 'can', 'CAN.G251.10' => 'can', 'CAN.G251.9' => 'can', 'CAN.G398.24' => 'can', 'CAN.G410.32' => 'can', 'CAN.G881.2' => 'can', 'CANSAT01G3025' => 'cansat', 'CANSAT78G1211' => 'cansat', 'CANSAT78G1218' => 'cansat', 'CANSAT78G1521' => 'cansat', 'CANSAT78G1670' => 'cansat', 'CARHR003600' => 'chi', 'CARHR003610' => 'chi', 'CARHR006290' => 'chi', 'CARHR006430' => 'chi', 'CARHR124110' => 'chi', 'CARHR203870' => 'chi', 'CARHR203880' => 'chi', 'CARHR203890' => 'chi', 'CARHR276880' => 'chi', 'Carub.0001s0346' => 'cru', 'Carub.0001s0347' => 'cru', 'Carub.0001s0607' => 'cru', 'Carub.0003s2768' => 'cru', 'Carub.0003s2769' => 'cru', 'Carub.0004s1178' => 'cru', 'Carub.0006s0806' => 'cru', 'Carub.0006s0807' => 'cru', 'Carub.0006s0808' => 'cru', 'Carub.0008s0501' => 'cru', 'Carub.0008s2379' => 'cru', 'Ca_08655_v3' => 'car', 'Ca_08922_v3' => 'car', 'Ca_08923_v3' => 'car', 'Ca_09119_v3' => 'car', 'Ca_09703_v3' => 'car', 'Ca_09705_v3' => 'car', 'Ca_09835_v3' => 'car', 'Ca_26403_v3' => 'car', 'Ca_30719_v3' => 'car', 'CBR_g17958' => 'cbr', 'CBR_g40516' => 'cbr', 'Cc00_g05350' => 'ccan', 'Cc01_g18690' => 'ccan', 'Cc03_g04830' => 'ccan', 'Cc03_g04850' => 'ccan', 'CDE02G4469' => 'cde', 'CDE06G0883' => 'cde', 'CDE06G1295' => 'cde', 'CDE06G1390' => 'cde', 'CDE07G0584' => 'cde', 'CDE07G1084' => 'cde', 'CDE08G1259' => 'cde', 'Cfa002341' => 'cfa', 'Cfa024337' => 'cfa', 'Ciclev10004749m.g' => 'ccl', 'Ciclev10006127m.g' => 'ccl', 'Ciclev10019720m.g' => 'ccl', 'Ciclev10022652m.g' => 'ccl', 'CiPaw.01G190400' => 'cil', 'CiPaw.01G190500' => 'cil', 'CiPaw.02G116400' => 'cil', 'CiPaw.02G116500' => 'cil', 'CiPaw.04G183000' => 'cil', 'CiPaw.04G183300' => 'cil', 'ClCG05G004610' => 'cla', 'ClCG05G004620' => 'cla', 'ClCG06G006730' => 'cla', 'ClCG06G006740' => 'cla', 'ClCG11G003690' => 'cla', 'COL.COLO4_08276' => 'col', 'COL.COLO4_08277' => 'col', 'COL.COLO4_15787' => 'col', 'COL.COLO4_15789' => 'col', 'Cpa.g.c44815' => 'cpa', 'Cpa.g.sc52.144' => 'cpa', 'Cpa.g.sc58.46' => 'cpa', 'Cpa.g.sc58.47' => 'cpa', 'Cre08.g360900' => 'cre', 'CsaV3_2G013030' => 'csa', 'CsaV3_2G013050' => 'csa', 'CsaV3_2G015620' => 'csa', 'CsaV3_3G012590' => 'csa', 'CsaV3_3G012600' => 'csa', 'CSS0001641' => 'camsi', 'CSS0008310' => 'camsi', 'CSS0013011' => 'camsi', 'CSS0017147' => 'camsi', 'CSS0022970' => 'camsi', 'CSS0025655' => 'camsi', 'CSS0028665' => 'camsi', 'CSS0029117' => 'camsi', 'CSS0032024' => 'camsi', 'CSS0039681' => 'camsi', 'CSS0046516' => 'camsi', 'CSS0050307' => 'camsi', 'DCAR_005871' => 'dca', 'DCAR_007342' => 'dca', 'DCAR_024228' => 'dca', 'DCAR_027277' => 'dca', 'DCAR_030718' => 'dca', 'Dinv20287' => 'din', 'Dinv22461' => 'din', 'Dinv22464' => 'din', 'Dinv29912' => 'din', 'Dinv29913' => 'din', 'Dinv34580' => 'din', 'Dinv34582' => 'din', 'Dinv44632' => 'din', 'Duzib052G0266' => 'dzi', 'Duzib133G0907' => 'dzi', 'Duzib133G1034' => 'dzi', 'Duzib138G0207' => 'dzi', 'Duzib138G0491' => 'dzi', 'Duzib151G0812' => 'dzi', 'Duzib151G1166' => 'dzi', 'Duzib168G0192' => 'dzi', 'Duzib211G0077' => 'dzi', 'Duzib212G0429' => 'dzi', 'Duzib212G0472' => 'dzi', 'ECA233G2617' => 'eca', 'ECA236G4188' => 'eca', 'ECA240G0936' => 'eca', 'ECA240G1129' => 'eca', 'ECA247G0623' => 'eca', 'EL10Ac5g10451' => 'bvu', 'EL10Ac5g10453' => 'bvu', 'EL10Ac5g10894' => 'bvu', 'Eucgr.H00192' => 'egr', 'Eucgr.H00193' => 'egr', 'Eucgr.H00194' => 'egr', 'Eucgr.J01562' => 'egr', 'Eucgr.K03301' => 'egr', 'FAN02G0632' => 'fan', 'FAN05G5378' => 'fan', 'FAN09G3247' => 'fan', 'FAN12G0435' => 'fan', 'FAN12G2426' => 'fan', 'FAN14G1707' => 'fan', 'FAN14G4725' => 'fan', 'FAN15G2071' => 'fan', 'FAN17G3065' => 'fan', 'FAN19G1376' => 'fan', 'FAN20G0354' => 'fan', 'FAN20G2429' => 'fan', 'FAN20G2658' => 'fan', 'FAN24G2343' => 'fan', 'FAN27G2362' => 'fan', 'FAN28G1765' => 'fan', 'FvH4_1g16020' => 'fve', 'FvH4_2g04890' => 'fve', 'FvH4_2g22270' => 'fve', 'FvH4_4g02630' => 'fve', 'FvH4_4g02640' => 'fve', 'FvH4_6g02650' => 'fve', 'Glyma.02G140600' => 'gma', 'Glyma.03G159900' => 'gma', 'Glyma.05G234800' => 'gma', 'Glyma.07G269600' => 'gma', 'Glyma.08G042300' => 'gma', 'Glyma.10G033500' => 'gma', 'Glyma.10G185200' => 'gma', 'Glyma.17G004300' => 'gma', 'Glyma.19G161900' => 'gma', 'Glyma.20G205100' => 'gma', 'Glyma.20G205200' => 'gma', 'Gohir.A01G139101' => 'ghi', 'Gohir.A02G035600' => 'ghi', 'Gohir.A02G117901' => 'ghi', 'Gohir.A07G210100' => 'ghi', 'Gohir.A07G210200' => 'ghi', 'Gohir.A08G061100' => 'ghi', 'Gohir.A09G223000' => 'ghi', 'Gohir.A09G223100' => 'ghi', 'Gohir.A10G113900' => 'ghi', 'Gohir.A10G114000' => 'ghi', 'Gohir.D02G042300' => 'ghi', 'Gohir.D07G216100' => 'ghi', 'Gohir.D07G216200' => 'ghi', 'Gohir.D08G070400' => 'ghi', 'Gohir.D09G225000' => 'ghi', 'Gohir.D09G225100' => 'ghi', 'Gohir.D10G152300' => 'ghi', 'Gohir.D10G153200' => 'ghi', 'Gohir.D11G133701' => 'ghi', 'Gorai.004G074100' => 'gra', 'Gorai.005G046800' => 'gra', 'Gorai.006G246500' => 'gra', 'Gorai.006G246600' => 'gra', 'Gorai.007G142900' => 'gra', 'Gorai.011G171000' => 'gra', 'Gorai.011G171100' => 'gra', 'Gorai.013G104300' => 'gra', 'Gorai.013G104400' => 'gra', 'GSVIVG01000754001' => 'vvi', 'GSVIVG01000756001' => 'vvi', 'GSVIVG01010903001' => 'vvi', 'GSVIVG01017623001' => 'vvi', 'GSVIVG01018113001' => 'vvi', 'GSVIVG01018116001' => 'vvi', 'GSVIVG01018118001' => 'vvi', 'HanXRQChr03g0076211' => 'han', 'HanXRQChr03g0092431' => 'han', 'HanXRQChr03g0092441' => 'han', 'HanXRQChr03g0092591' => 'han', 'HanXRQChr03g0092671' => 'han', 'HanXRQChr03g0092681' => 'han', 'HanXRQChr03g0092691' => 'han', 'HanXRQChr03g0092701' => 'han', 'HanXRQChr03g0092721' => 'han', 'HanXRQChr03g0092731' => 'han', 'HanXRQChr04g0113681' => 'han', 'HanXRQChr10g0281371' => 'han', 'HanXRQChr11g0337141' => 'han', 'HanXRQChr13g0424521' => 'han', 'HanXRQChr13g0424531' => 'han', 'HanXRQChr13g0424541' => 'han', 'HanXRQChr16g0498221' => 'han', 'Haze_04377' => 'cav', 'Haze_11298' => 'cav', 'Haze_24547' => 'cav', 'Haze_24550' => 'cav', 'Haze_26587' => 'cav', 'Hma1.2p1_0650F.1_g195410' => 'hma', 'Hma1.2p1_0893F.1_g233470' => 'hma', 'HPP92_006508' => 'vpl', 'HPP92_024780' => 'vpl', 'Hund02688' => 'sun', 'Hund09380' => 'sun', 'Hund09381' => 'sun', 'Hund09832' => 'sun', 'Hund09833' => 'sun', 'Hund11351' => 'sun', 'Hund11513' => 'sun', 'Lalb_Chr06g0162591' => 'lal', 'Lalb_Chr06g0162601' => 'lal', 'Lalb_Chr06g0169321' => 'lal', 'Lalb_Chr09g0330951' => 'lal', 'Lalb_Chr16g0387631' => 'lal', 'Lalb_Chr21g0306241' => 'lal', 'Lalb_Chr25g0290051' => 'lal', 'Lalb_Chr25g0290061' => 'lal', 'Lalb_Chr25g0290071' => 'lal', 'Lj1g0003876' => 'lja', 'Lj1P1207T36' => 'lonja', 'Lj2C1156G12' => 'lonja', 'Lj3A793G39' => 'lonja', 'Lj3C580G2' => 'lonja', 'Lj3C780G2' => 'lonja', 'Lj3C780T4' => 'lonja', 'Lj3C793G9' => 'lonja', 'Lj4g0012960' => 'lja', 'Lj5g0021252' => 'lja', 'Lj5g0021484' => 'lja', 'Lj5g0024528' => 'lja', 'Lj6A399T12' => 'lonja', 'Lj6A656G65' => 'lonja', 'Lsat_1_v5_gn_3_125500' => 'lsa', 'Lsat_1_v5_gn_3_125540' => 'lsa', 'Lsat_1_v5_gn_5_72701' => 'lsa', 'Lsat_1_v5_gn_8_91560' => 'lsa', 'Lsat_1_v5_gn_9_9640' => 'lsa', 'Manes.01G200600' => 'mes', 'Manes.01G200700' => 'mes', 'Manes.03G168900' => 'mes', 'Manes.03G169000' => 'mes', 'Manes.05G085801' => 'mes', 'Manes.05G086200' => 'mes', 'Manes.15G036700' => 'mes', 'Manes.15G036900' => 'mes', 'Mapoly0004s0172' => 'mpo', 'Mapoly0023s0001' => 'mpo', 'Mapoly0142s0012' => 'mpo', 'MBI01_g32854_MAGBIO' => 'mbi', 'MBI11_g24427_MAGBIO' => 'mbi', 'MBI11_g47319_MAGBIO' => 'mbi', 'MCO01G433' => 'mco', 'MD00G1187800' => 'mdo', 'MD04G1226500' => 'mdo', 'MD05G1203900' => 'mdo', 'MD10G1191100' => 'mdo', 'MD12G1243500' => 'mdo', 'MD13G1207000' => 'mdo', 'MD13G1207100' => 'mdo', 'MD16G1208600' => 'mdo', 'Medtr1g050352' => 'mtr', 'Medtr1g070385' => 'mtr', 'Medtr1g070450' => 'mtr', 'Medtr1g075200' => 'mtr', 'Medtr1g075250' => 'mtr', 'Medtr1g075260' => 'mtr', 'Medtr1g475250' => 'mtr', 'Medtr4g075450' => 'mtr', 'Medtr7g096300' => 'mtr', 'Medtr8g105110' => 'mtr', 'MELO3C006470.2' => 'cme', 'MELO3C006471.2' => 'cme', 'MELO3C020772.2' => 'cme', 'MELO3C026780.2' => 'cme', 'MELO3C026781.2' => 'cme', 'Migut.D00390' => 'egut', 'Migut.G00435' => 'egut', 'Migut.G00436' => 'egut', 'Migut.G00718' => 'egut', 'MSTRG.21891' => 'ama', 'MSTRG.26910' => 'ama', 'MSTRG.4099' => 'ama', 'MSTRG.9925' => 'ama', 'Nitab4.5_0000165g0010' => 'nta', 'Nitab4.5_0000209g0180' => 'nta', 'Nitab4.5_0000244g0440' => 'nta', 'Nitab4.5_0000525g0220' => 'nta', 'Nitab4.5_0001597g0020' => 'nta', 'Nitab4.5_0001878g0040' => 'nta', 'Nitab4.5_0001878g0060' => 'nta', 'Nitab4.5_0002838g0100' => 'nta', 'Nitab4.5_0002838g0120' => 'nta', 'Nitab4.5_0004798g0030' => 'nta', 'Nitab4.5_0005420g0010' => 'nta', 'Nitab4.5_0005507g0010' => 'nta', 'Nitab4.5_0005574g0020' => 'nta', 'Nitab4.5_0005838g0010' => 'nta', 'Nitab4.5_0010580g0020' => 'nta', 'Nn1g02599' => 'nnu', 'Nn1g02608' => 'nnu', 'Nn3g17742' => 'nnu', 'Nn3g19534' => 'nnu', 'Nn3g19535' => 'nnu', 'Oeu008790.1' => 'oeu', 'Oeu008792.1' => 'oeu', 'Oeu032590.1' => 'oeu', 'Oeu035349.1' => 'oeu', 'Oeu049791.1' => 'oeu', 'Os01g0774500' => 'osa', 'Os03g0628800' => 'osa', 'Os03g0798600' => 'osa', 'Os05g0508800' => 'osa', 'Peaxi162Scf00036g02018' => 'pax', 'Peaxi162Scf00578g00032' => 'pax', 'Peaxi162Scf00578g00317' => 'pax', 'Peaxi162Scf00785g00114' => 'pax', 'Peaxi162Scf00813g00119' => 'pax', 'Peaxi162Scf00906g00227' => 'pax', 'PGR004G0875' => 'pgr', 'PGR004G2424' => 'pgr', 'PGR031G1239' => 'pgr', 'PGR031G2474' => 'pgr', 'PGR044G0423' => 'pgr', 'PGSC0003DMG400001128' => 'stu', 'PGSC0003DMG400007336' => 'stu', 'PGSC0003DMG400016318' => 'stu', 'PGSC0003DMG400016319' => 'stu', 'PGSC0003DMG400018074' => 'stu', 'Phvul.001G157700' => 'pvu', 'Phvul.002G148550' => 'pvu', 'Phvul.002G320200' => 'pvu', 'Phvul.003G089200' => 'pvu', 'Phvul.007G126000' => 'pvu', 'Phvul.007G126100' => 'pvu', 'Phvul.007G178000' => 'pvu', 'Phvul.007G178200' => 'pvu', 'Potri.002G043000' => 'ptr', 'Potri.002G043200' => 'ptr', 'Potri.003G123750' => 'ptr', 'Potri.005G055401' => 'ptr', 'Potri.005G219700' => 'ptr', 'Potri.005G220000' => 'ptr', 'Potri.008G161901' => 'ptr', 'Potri.008G162000' => 'ptr', 'Potri.008G162400' => 'ptr', 'Potri.010G076900' => 'ptr', 'Pp3c12_9180' => 'ppa', 'Pp3c13_19770' => 'ppa', 'Pp3c14_22950' => 'ppa', 'Pp3c16_12160' => 'ppa', 'Pp3c27_7820' => 'ppa', 'Pp3c2_3490' => 'ppa', 'Pp3c3_23700' => 'ppa', 'Pp3c3_36520' => 'ppa', 'Pp3c4_15250' => 'ppa', 'PRCOL_00007002' => 'pco', 'Prupe.1G030600' => 'ppe', 'Prupe.1G030700' => 'ppe', 'Prupe.6G345200' => 'ppe', 'Prupe.8G230300' => 'ppe', 'Prupe.8G230500' => 'ppe', 'Psat3g059600' => 'psa', 'Psat5g200920' => 'psa', 'Psat6g056440' => 'psa', 'Psat6g057360' => 'psa', 'Psat6g134120' => 'psa', 'Psat6g134160' => 'psa', 'Psat7g008640' => 'psa', 'Psat7g185240' => 'psa', 'PSO017G1330' => 'pso', 'PSO063G6097' => 'pso', 'PSO170G0835' => 'pso', 'PSO170G2499' => 'pso', 'PSO210G5058' => 'pso', 'PSO210G6154' => 'pso', 'PSO585G0031' => 'pso', 'PSO832G0264' => 'pso', 'PSO832G4288' => 'pso', 'QL03p027355' => 'qlo', 'QL03p027430' => 'qlo', 'QL04p081380' => 'qlo', 'QL06p015642' => 'qlo', 'QL06p015650' => 'qlo', 'QL06p015686' => 'qlo', 'QL12p042927' => 'qlo', 'QL93p1863_0035' => 'qlo', 'RcHm_v2.0_Chr3g0450581' => 'rch', 'RcHm_v2.0_Chr4g0390371' => 'rch', 'RcHm_v2.0_Chr4g0390381' => 'rch', 'RcHm_v2.0_Chr4g0390491' => 'rch', 'RcHm_v2.0_Chr4g0390501' => 'rch', 'RcHm_v2.0_Chr6g0289231' => 'rch', 'Rhsim04G0190400' => 'rsi', 'Rhsim04G0190500' => 'rsi', 'Rhsim04G0190600' => 'rsi', 'Rhsim13G0031400' => 'rsi', 'Rhsim13G0165600' => 'rsi', 'RhsimUnG0114600' => 'rsi', 'RhsimUnG0114700' => 'rsi', 'Sabra02G0034800' => 'sbr', 'Sabra02G0035100' => 'sbr', 'Sabra05G0168600' => 'sbr', 'Sabra05G0168800' => 'sbr', 'Sabra08G0123700' => 'sbr', 'Sabra10G0031900' => 'sbr', 'Sabra13G0039000' => 'sbr', 'SalBow2G0782' => 'sbo', 'SalBow2G1403' => 'sbo', 'SalBow4G0074' => 'sbo', 'SalBow4G2635' => 'sbo', 'SalBow5G3010' => 'sbo', 'Sc05g0000870' => 'sci', 'Sc05g0000890' => 'sci', 'Sc13g0005000' => 'sci', 'Sc13g0005030' => 'sci', 'Sc19g0003790' => 'sci', 'Sc19g0003800' => 'sci', 'Sed0003467' => 'sed', 'Sed0009355' => 'sed', 'Sed0009894' => 'sed', 'Sed0011972' => 'sed', 'Sed0021483' => 'sed', 'Sed0021750' => 'sed', 'Sed0026279' => 'sed', 'SEGI_05312' => 'sgi', 'SEGI_10112' => 'sgi', 'SEGI_15835' => 'sgi', 'SEGI_30386' => 'sgi', 'SEGI_34122' => 'sgi', 'SEGI_35063' => 'sgi', 'SGA_v2.0_scaffold101G29794' => 'sas', 'SGA_v2.0_scaffold1G00573' => 'sas', 'SGA_v2.0_scaffold79G25637' => 'sas', 'SGA_v2.0_scaffold88G27283' => 'sas', 'SGA_v2.0_scaffold88G27285' => 'sas', 'SGA_v2.0_scaffold88G27331' => 'sas', 'SHI09937' => 'shi', 'SMO119G0302' => 'smo', 'SMO137G0231' => 'smo', 'SMO367G1151' => 'smo', 'Solyc02g082000.3' => 'sly', 'Solyc06g031670.3' => 'sly', 'Solyc06g053810.3' => 'sly', 'Solyc07g025457.1' => 'sly', 'Solyc08g059740.1' => 'sly', 'Solyc08g059750.3' => 'sly', 'Solyc09g083370.3' => 'sly', 'Solyc12g038950.3' => 'sly', 'Sopen02g026630' => 'spe', 'Sopen06g018930' => 'spe', 'Sopen06g018940' => 'spe', 'Sopen08g009460' => 'spe', 'Sopen09g032290' => 'spe', 'Sp1g03080' => 'spa', 'Sp1g03090' => 'spa', 'Sp1g05480' => 'spa', 'Sp2g07860' => 'spa', 'Sp2g08430' => 'spa', 'Sp2g08440' => 'spa', 'Sp2g26200' => 'spa', 'Sp4g13170' => 'spa', 'Sp6g33840' => 'spa', 'SpUn1204_0010' => 'spa', 'TAR365G0908' => 'tar', 'TAR381G1270' => 'tar', 'TAR381G1651' => 'tar', 'TAR625G1131' => 'tar', 'TAR633G0962' => 'tar', 'TAR633G1729' => 'tar', 'TAR633G1864' => 'tar', 'TAR636G0221' => 'tar', 'TAR636G0314' => 'tar', 'TAR636G3202' => 'tar', 'THA.LOC104800805' => 'tha', 'THA.LOC104801096' => 'tha', 'THA.LOC104801555' => 'tha', 'THA.LOC104808491' => 'tha', 'THA.LOC104808595' => 'tha', 'THA.LOC104815985' => 'tha', 'THA.LOC104822250' => 'tha', 'THA.LOC104826071' => 'tha', 'Thecc.01G265200' => 'tca', 'Thecc.01G265300' => 'tca', 'Thecc.01G265700' => 'tca', 'Thecc.03G109100' => 'tca', 'Thecc.04G245900' => 'tca', 'Thecc.04G246000' => 'tca', 'Thhalv10003334m.g' => 'esa', 'Thhalv10005508m.g' => 'esa', 'Thhalv10005643m.g' => 'esa', 'Thhalv10007316m.g' => 'esa', 'Thhalv10009006m.g' => 'esa', 'Thhalv10009309m.g' => 'esa', 'Thhalv10014917m.g' => 'esa', 'Thhalv10014919m.g' => 'esa', 'Thhalv10015393m.g' => 'esa', 'Thhalv10016515m.g' => 'esa', 'Thhalv10029242m.g' => 'esa', 'TPR.G16654' => 'tpr', 'TPR.G20589' => 'tpr', 'TPR.G23029' => 'tpr', 'TPR.G27731' => 'tpr', 'TPR.G28889' => 'tpr', 'TPR.G28899' => 'tpr', 'TPR.G30846' => 'tpr', 'TPR.G5452' => 'tpr', 'TPR.G5713' => 'tpr', 'TPR.G9046' => 'tpr', 'TPR.G9061' => 'tpr', 'TWI09G1075' => 'twi', 'TWI12G0806' => 'twi', 'TWI18G0108' => 'twi', 'TWI53G1361' => 'twi', 'TWI73G0185' => 'twi', 'TWI73G0427' => 'twi', 'unitig_37.g12001' => 'ugi', 'unitig_747.g21660' => 'ugi', 'unitig_748.g7232' => 'ugi', 'unitig_748.g7315' => 'ugi', 'unitig_85.g27262' => 'ugi', 'unitig_92.g28220' => 'ugi', 'vmacro02632' => 'vma', 'vmacro08410' => 'vma', 'vmacro08411' => 'vma', 'vmacro15407' => 'vma', 'VMungo0251G3619' => 'vmu', 'VMungo0720G1204' => 'vmu', 'VMungo0720G1918' => 'vmu', 'VMungo0720G2387' => 'vmu', 'VMungo0720G2961' => 'vmu', 'VMungo1215G2154' => 'vmu', 'VMungo1383G2411' => 'vmu', 'Zm00001eb051130' => 'zma', 'Zm00001eb116830' => 'zma', 'Zm00001eb116850' => 'zma', 'Zm00001eb151740' => 'zma', 'Zm00001eb292360' => 'zma', 'Zm00001eb301640' => 'zma' ) $gf_id = 'HOM05D000856' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000856' ) $data_identifier = 'HOM05D000856' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 13, 'ath' => (int) 10, 'atr' => (int) 1, 'acertr' => (int) 8, 'cqu' => (int) 6, 'bca' => (int) 21, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 11, 'car' => (int) 9, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 8, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 5, 'fan' => (int) 16, 'fve' => (int) 6, 'gma' => (int) 11, 'ghi' => (int) 19, 'gra' => (int) 9, 'vvi' => (int) 7, 'han' => (int) 17, 'cav' => (int) 5, 'hma' => (int) 2, 'vpl' => (int) 2, 'sun' => (int) 7, 'lal' => (int) 9, 'lja' => (int) 5, 'lonja' => (int) 9, 'lsa' => (int) 5, 'mes' => (int) 8, 'mpo' => (int) 3, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 10, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 15, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 9, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 9, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 6, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 5, 'spa' => (int) 10, 'tar' => (int) 10, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 11, 'tpr' => (int) 11, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 4, 'vmu' => (int) 7, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb301640' $species_info = array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ) $local_species = 'amhyb' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000856', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p00010' => 'bna', 'A03p04160' => 'bna', 'A03p17160' => 'bna', 'A04p23370' => 'bna', 'A05p14860' => 'bna', 'A08p37020' => 'bna', 'A09p08050' => 'bna', 'A09p66800' => 'bna', 'A09p67940' => 'bna', 'A10p02680' => 'bna', 'A10p05320' => 'bna', 'Aa31LG1G20560' => 'aar', 'Aa31LG1G20610' => 'aar', 'Aa31LG1G7810' => 'aar', 'Aa31LG5G3590' => 'aar', 'Aa31LG5G6140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3819' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4683' => 'aag', 'Actinidia04480' => 'ach', 'Actinidia05466' => 'ach', 'Actinidia08445' => 'ach', 'Actinidia21170' => 'ach', 'Actinidia24812' => 'ach', 'Actinidia24951' => 'ach', 'Actinidia40088' => 'ach', 'Ah.02g111660' => 'amhyb', 'Ah.11g048900' => 'amhyb', 'Ah.11g049910' => 'amhyb', 'AL1G13870' => 'aly', 'AL1G13880' => 'aly', 'AL1G16760' => 'aly', 'AL390U10020' => 'aly', 'AL4G25520' => 'aly', 'AL6G19890' => 'aly', 'AL6G19900' => 'aly', 'AL6G19910' => 'aly', 'AL8G40100' => 'aly', 'Aqoxy2G03562' => 'aox', 'Aqoxy5G00316' => 'aox', 'Aqoxy5G00926' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1628KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1H403S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2FU6SJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.882I6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8YRY2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YN1SN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AF70II' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZA8L1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F916KL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHRD8H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KTZ8QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S22EMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8M29T' => 'arhy', 'AT1G04270' => 'ath', 'AT1G04280' => 'ath', 'AT1G06750' => 'ath', 'AT1G33850' => 'ath', 'AT2G30630' => 'ath', 'AT5G09490' => 'ath', 'AT5G09500' => 'ath', 'AT5G09510' => 'ath', 'AT5G43640' => 'ath', 'AT5G63070' => 'ath', 'ATR0605G315' => 'atr', 'Atru.chr11.175' => 'acertr', 'Atru.chr11.653' => 'acertr', 'Atru.chr3.1616' => 'acertr', 'Atru.chr4.2230' => 'acertr', 'Atru.chr4.2232' => 'acertr', 'Atru.chr5.1598' => 'acertr', 'Atru.chr5.1600' => 'acertr', 'Atru.chr5.2188' => 'acertr', 'AUR62008326' => 'cqu', 'AUR62011922' => 'cqu', 'AUR62011924' => 'cqu', 'AUR62021771' => 'cqu', 'AUR62032237' => 'cqu', 'AUR62032240' => 'cqu', 'BcaB01g05572' => 'bca', 'BcaB02g10337' => 'bca', 'BcaB04g19944' => 'bca', 'BcaB05g21548' => 'bca', 'BcaB05g21549' => 'bca', 'BcaB05g23227' => 'bca', 'BcaB06g26256' => 'bca', 'BcaB06g26257' => 'bca', 'BcaB06g28379' => 'bca', 'BcaC02g11159' => 'bca', 'BcaC03g13258' => 'bca', 'BcaC03g13259' => 'bca', 'BcaC05g24456' => 'bca', 'BcaC05g24457' => 'bca', 'BcaC07g36922' => 'bca', 'BcaC07g36923' => 'bca', 'BcaC07g42050' => 'bca', 'BcaC07g42176' => 'bca', 'BcaC07g42195' => 'bca', 'BcaC07g42196' => 'bca', 'BcaNung06674' => 'bca', 'BolC2t06351H' => 'bol', 'BolC2t06352H' => 'bol', 'BolC3t12993H' => 'bol', 'BolC4t23525H' => 'bol', 'BolC4t27475H' => 'bol', 'BolC5t29025H' => 'bol', 'BolC5t29026H' => 'bol', 'BolC8t46898H' => 'bol', 'BolC8t46899H' => 'bol', 'BolC8t52630H' => 'bol', 'BolC8t52765H' => 'bol', 'BolC9t53824H' => 'bol', 'BraA03t09760Z' => 'bra', 'BraA03t10990Z' => 'bra', 'BraA05t20413Z' => 'bra', 'BraA08t35602Z' => 'bra', 'BraA09t36458Z' => 'bra', 'BraA09t42018Z' => 'bra', 'BraA09t42129Z' => 'bra', 'BraA10t42536Z' => 'bra', 'BraA10t42537Z' => 'bra', 'C01p10690' => 'bna', 'C02p03890' => 'bna', 'C02p03900' => 'bna', 'C03p04620' => 'bna', 'C04p19870' => 'bna', 'C04p59670' => 'bna', 'C05p02460' => 'bna', 'C05p02470' => 'bna', 'C08p00980' => 'bna', 'C08p00990' => 'bna', 'C08p51030' => 'bna', 'C08p52360' => 'bna', 'C09p09120' => 'bna', 'CAN.G19.15' => 'can', 'CAN.G251.10' => 'can', 'CAN.G251.9' => 'can', 'CAN.G398.24' => 'can', 'CAN.G410.32' => 'can', 'CAN.G881.2' => 'can', 'CANSAT01G3025' => 'cansat', 'CANSAT78G1211' => 'cansat', 'CANSAT78G1218' => 'cansat', 'CANSAT78G1521' => 'cansat', 'CANSAT78G1670' => 'cansat', 'CARHR003600' => 'chi', 'CARHR003610' => 'chi', 'CARHR006290' => 'chi', 'CARHR006430' => 'chi', 'CARHR124110' => 'chi', 'CARHR203870' => 'chi', 'CARHR203880' => 'chi', 'CARHR203890' => 'chi', 'CARHR276880' => 'chi', 'Carub.0001s0346' => 'cru', 'Carub.0001s0347' => 'cru', 'Carub.0001s0607' => 'cru', 'Carub.0003s2768' => 'cru', 'Carub.0003s2769' => 'cru', 'Carub.0004s1178' => 'cru', 'Carub.0006s0806' => 'cru', 'Carub.0006s0807' => 'cru', 'Carub.0006s0808' => 'cru', 'Carub.0008s0501' => 'cru', 'Carub.0008s2379' => 'cru', 'Ca_08655_v3' => 'car', 'Ca_08922_v3' => 'car', 'Ca_08923_v3' => 'car', 'Ca_09119_v3' => 'car', 'Ca_09703_v3' => 'car', 'Ca_09705_v3' => 'car', 'Ca_09835_v3' => 'car', 'Ca_26403_v3' => 'car', 'Ca_30719_v3' => 'car', 'CBR_g17958' => 'cbr', 'CBR_g40516' => 'cbr', 'Cc00_g05350' => 'ccan', 'Cc01_g18690' => 'ccan', 'Cc03_g04830' => 'ccan', 'Cc03_g04850' => 'ccan', 'CDE02G4469' => 'cde', 'CDE06G0883' => 'cde', 'CDE06G1295' => 'cde', 'CDE06G1390' => 'cde', 'CDE07G0584' => 'cde', 'CDE07G1084' => 'cde', 'CDE08G1259' => 'cde', 'Cfa002341' => 'cfa', 'Cfa024337' => 'cfa', 'Ciclev10004749m.g' => 'ccl', 'Ciclev10006127m.g' => 'ccl', 'Ciclev10019720m.g' => 'ccl', 'Ciclev10022652m.g' => 'ccl', 'CiPaw.01G190400' => 'cil', 'CiPaw.01G190500' => 'cil', 'CiPaw.02G116400' => 'cil', 'CiPaw.02G116500' => 'cil', 'CiPaw.04G183000' => 'cil', 'CiPaw.04G183300' => 'cil', 'ClCG05G004610' => 'cla', 'ClCG05G004620' => 'cla', 'ClCG06G006730' => 'cla', 'ClCG06G006740' => 'cla', 'ClCG11G003690' => 'cla', 'COL.COLO4_08276' => 'col', 'COL.COLO4_08277' => 'col', 'COL.COLO4_15787' => 'col', 'COL.COLO4_15789' => 'col', 'Cpa.g.c44815' => 'cpa', 'Cpa.g.sc52.144' => 'cpa', 'Cpa.g.sc58.46' => 'cpa', 'Cpa.g.sc58.47' => 'cpa', 'Cre08.g360900' => 'cre', 'CsaV3_2G013030' => 'csa', 'CsaV3_2G013050' => 'csa', 'CsaV3_2G015620' => 'csa', 'CsaV3_3G012590' => 'csa', 'CsaV3_3G012600' => 'csa', 'CSS0001641' => 'camsi', 'CSS0008310' => 'camsi', 'CSS0013011' => 'camsi', 'CSS0017147' => 'camsi', 'CSS0022970' => 'camsi', 'CSS0025655' => 'camsi', 'CSS0028665' => 'camsi', 'CSS0029117' => 'camsi', 'CSS0032024' => 'camsi', 'CSS0039681' => 'camsi', 'CSS0046516' => 'camsi', 'CSS0050307' => 'camsi', 'DCAR_005871' => 'dca', 'DCAR_007342' => 'dca', 'DCAR_024228' => 'dca', 'DCAR_027277' => 'dca', 'DCAR_030718' => 'dca', 'Dinv20287' => 'din', 'Dinv22461' => 'din', 'Dinv22464' => 'din', 'Dinv29912' => 'din', 'Dinv29913' => 'din', 'Dinv34580' => 'din', 'Dinv34582' => 'din', 'Dinv44632' => 'din', 'Duzib052G0266' => 'dzi', 'Duzib133G0907' => 'dzi', 'Duzib133G1034' => 'dzi', 'Duzib138G0207' => 'dzi', 'Duzib138G0491' => 'dzi', 'Duzib151G0812' => 'dzi', 'Duzib151G1166' => 'dzi', 'Duzib168G0192' => 'dzi', 'Duzib211G0077' => 'dzi', 'Duzib212G0429' => 'dzi', 'Duzib212G0472' => 'dzi', 'ECA233G2617' => 'eca', 'ECA236G4188' => 'eca', 'ECA240G0936' => 'eca', 'ECA240G1129' => 'eca', 'ECA247G0623' => 'eca', 'EL10Ac5g10451' => 'bvu', 'EL10Ac5g10453' => 'bvu', 'EL10Ac5g10894' => 'bvu', 'Eucgr.H00192' => 'egr', 'Eucgr.H00193' => 'egr', 'Eucgr.H00194' => 'egr', 'Eucgr.J01562' => 'egr', 'Eucgr.K03301' => 'egr', 'FAN02G0632' => 'fan', 'FAN05G5378' => 'fan', 'FAN09G3247' => 'fan', 'FAN12G0435' => 'fan', 'FAN12G2426' => 'fan', 'FAN14G1707' => 'fan', 'FAN14G4725' => 'fan', 'FAN15G2071' => 'fan', 'FAN17G3065' => 'fan', 'FAN19G1376' => 'fan', 'FAN20G0354' => 'fan', 'FAN20G2429' => 'fan', 'FAN20G2658' => 'fan', 'FAN24G2343' => 'fan', 'FAN27G2362' => 'fan', 'FAN28G1765' => 'fan', 'FvH4_1g16020' => 'fve', 'FvH4_2g04890' => 'fve', 'FvH4_2g22270' => 'fve', 'FvH4_4g02630' => 'fve', 'FvH4_4g02640' => 'fve', 'FvH4_6g02650' => 'fve', 'Glyma.02G140600' => 'gma', 'Glyma.03G159900' => 'gma', 'Glyma.05G234800' => 'gma', 'Glyma.07G269600' => 'gma', 'Glyma.08G042300' => 'gma', 'Glyma.10G033500' => 'gma', 'Glyma.10G185200' => 'gma', 'Glyma.17G004300' => 'gma', 'Glyma.19G161900' => 'gma', 'Glyma.20G205100' => 'gma', 'Glyma.20G205200' => 'gma', 'Gohir.A01G139101' => 'ghi', 'Gohir.A02G035600' => 'ghi', 'Gohir.A02G117901' => 'ghi', 'Gohir.A07G210100' => 'ghi', 'Gohir.A07G210200' => 'ghi', 'Gohir.A08G061100' => 'ghi', 'Gohir.A09G223000' => 'ghi', 'Gohir.A09G223100' => 'ghi', 'Gohir.A10G113900' => 'ghi', 'Gohir.A10G114000' => 'ghi', 'Gohir.D02G042300' => 'ghi', 'Gohir.D07G216100' => 'ghi', 'Gohir.D07G216200' => 'ghi', 'Gohir.D08G070400' => 'ghi', 'Gohir.D09G225000' => 'ghi', 'Gohir.D09G225100' => 'ghi', 'Gohir.D10G152300' => 'ghi', 'Gohir.D10G153200' => 'ghi', 'Gohir.D11G133701' => 'ghi', 'Gorai.004G074100' => 'gra', 'Gorai.005G046800' => 'gra', 'Gorai.006G246500' => 'gra', 'Gorai.006G246600' => 'gra', 'Gorai.007G142900' => 'gra', 'Gorai.011G171000' => 'gra', 'Gorai.011G171100' => 'gra', 'Gorai.013G104300' => 'gra', 'Gorai.013G104400' => 'gra', 'GSVIVG01000754001' => 'vvi', 'GSVIVG01000756001' => 'vvi', 'GSVIVG01010903001' => 'vvi', 'GSVIVG01017623001' => 'vvi', 'GSVIVG01018113001' => 'vvi', 'GSVIVG01018116001' => 'vvi', 'GSVIVG01018118001' => 'vvi', 'HanXRQChr03g0076211' => 'han', 'HanXRQChr03g0092431' => 'han', 'HanXRQChr03g0092441' => 'han', 'HanXRQChr03g0092591' => 'han', 'HanXRQChr03g0092671' => 'han', 'HanXRQChr03g0092681' => 'han', 'HanXRQChr03g0092691' => 'han', 'HanXRQChr03g0092701' => 'han', 'HanXRQChr03g0092721' => 'han', 'HanXRQChr03g0092731' => 'han', 'HanXRQChr04g0113681' => 'han', 'HanXRQChr10g0281371' => 'han', 'HanXRQChr11g0337141' => 'han', 'HanXRQChr13g0424521' => 'han', 'HanXRQChr13g0424531' => 'han', 'HanXRQChr13g0424541' => 'han', 'HanXRQChr16g0498221' => 'han', 'Haze_04377' => 'cav', 'Haze_11298' => 'cav', 'Haze_24547' => 'cav', 'Haze_24550' => 'cav', 'Haze_26587' => 'cav', 'Hma1.2p1_0650F.1_g195410' => 'hma', 'Hma1.2p1_0893F.1_g233470' => 'hma', 'HPP92_006508' => 'vpl', 'HPP92_024780' => 'vpl', 'Hund02688' => 'sun', 'Hund09380' => 'sun', 'Hund09381' => 'sun', 'Hund09832' => 'sun', 'Hund09833' => 'sun', 'Hund11351' => 'sun', 'Hund11513' => 'sun', 'Lalb_Chr06g0162591' => 'lal', 'Lalb_Chr06g0162601' => 'lal', 'Lalb_Chr06g0169321' => 'lal', 'Lalb_Chr09g0330951' => 'lal', 'Lalb_Chr16g0387631' => 'lal', 'Lalb_Chr21g0306241' => 'lal', 'Lalb_Chr25g0290051' => 'lal', 'Lalb_Chr25g0290061' => 'lal', 'Lalb_Chr25g0290071' => 'lal', 'Lj1g0003876' => 'lja', 'Lj1P1207T36' => 'lonja', 'Lj2C1156G12' => 'lonja', 'Lj3A793G39' => 'lonja', 'Lj3C580G2' => 'lonja', 'Lj3C780G2' => 'lonja', 'Lj3C780T4' => 'lonja', 'Lj3C793G9' => 'lonja', 'Lj4g0012960' => 'lja', 'Lj5g0021252' => 'lja', 'Lj5g0021484' => 'lja', 'Lj5g0024528' => 'lja', 'Lj6A399T12' => 'lonja', 'Lj6A656G65' => 'lonja', 'Lsat_1_v5_gn_3_125500' => 'lsa', 'Lsat_1_v5_gn_3_125540' => 'lsa', 'Lsat_1_v5_gn_5_72701' => 'lsa', 'Lsat_1_v5_gn_8_91560' => 'lsa', 'Lsat_1_v5_gn_9_9640' => 'lsa', 'Manes.01G200600' => 'mes', 'Manes.01G200700' => 'mes', 'Manes.03G168900' => 'mes', 'Manes.03G169000' => 'mes', 'Manes.05G085801' => 'mes', 'Manes.05G086200' => 'mes', 'Manes.15G036700' => 'mes', 'Manes.15G036900' => 'mes', 'Mapoly0004s0172' => 'mpo', 'Mapoly0023s0001' => 'mpo', 'Mapoly0142s0012' => 'mpo', 'MBI01_g32854_MAGBIO' => 'mbi', 'MBI11_g24427_MAGBIO' => 'mbi', 'MBI11_g47319_MAGBIO' => 'mbi', 'MCO01G433' => 'mco', 'MD00G1187800' => 'mdo', 'MD04G1226500' => 'mdo', 'MD05G1203900' => 'mdo', 'MD10G1191100' => 'mdo', 'MD12G1243500' => 'mdo', 'MD13G1207000' => 'mdo', 'MD13G1207100' => 'mdo', 'MD16G1208600' => 'mdo', 'Medtr1g050352' => 'mtr', 'Medtr1g070385' => 'mtr', 'Medtr1g070450' => 'mtr', 'Medtr1g075200' => 'mtr', 'Medtr1g075250' => 'mtr', 'Medtr1g075260' => 'mtr', 'Medtr1g475250' => 'mtr', 'Medtr4g075450' => 'mtr', 'Medtr7g096300' => 'mtr', 'Medtr8g105110' => 'mtr', 'MELO3C006470.2' => 'cme', 'MELO3C006471.2' => 'cme', 'MELO3C020772.2' => 'cme', 'MELO3C026780.2' => 'cme', 'MELO3C026781.2' => 'cme', 'Migut.D00390' => 'egut', 'Migut.G00435' => 'egut', 'Migut.G00436' => 'egut', 'Migut.G00718' => 'egut', 'MSTRG.21891' => 'ama', 'MSTRG.26910' => 'ama', 'MSTRG.4099' => 'ama', 'MSTRG.9925' => 'ama', 'Nitab4.5_0000165g0010' => 'nta', 'Nitab4.5_0000209g0180' => 'nta', 'Nitab4.5_0000244g0440' => 'nta', 'Nitab4.5_0000525g0220' => 'nta', 'Nitab4.5_0001597g0020' => 'nta', 'Nitab4.5_0001878g0040' => 'nta', 'Nitab4.5_0001878g0060' => 'nta', 'Nitab4.5_0002838g0100' => 'nta', 'Nitab4.5_0002838g0120' => 'nta', 'Nitab4.5_0004798g0030' => 'nta', 'Nitab4.5_0005420g0010' => 'nta', 'Nitab4.5_0005507g0010' => 'nta', 'Nitab4.5_0005574g0020' => 'nta', 'Nitab4.5_0005838g0010' => 'nta', 'Nitab4.5_0010580g0020' => 'nta', 'Nn1g02599' => 'nnu', 'Nn1g02608' => 'nnu', 'Nn3g17742' => 'nnu', 'Nn3g19534' => 'nnu', 'Nn3g19535' => 'nnu', 'Oeu008790.1' => 'oeu', 'Oeu008792.1' => 'oeu', 'Oeu032590.1' => 'oeu', 'Oeu035349.1' => 'oeu', 'Oeu049791.1' => 'oeu', 'Os01g0774500' => 'osa', 'Os03g0628800' => 'osa', 'Os03g0798600' => 'osa', 'Os05g0508800' => 'osa', 'Peaxi162Scf00036g02018' => 'pax', 'Peaxi162Scf00578g00032' => 'pax', 'Peaxi162Scf00578g00317' => 'pax', 'Peaxi162Scf00785g00114' => 'pax', 'Peaxi162Scf00813g00119' => 'pax', 'Peaxi162Scf00906g00227' => 'pax', 'PGR004G0875' => 'pgr', 'PGR004G2424' => 'pgr', 'PGR031G1239' => 'pgr', 'PGR031G2474' => 'pgr', 'PGR044G0423' => 'pgr', 'PGSC0003DMG400001128' => 'stu', 'PGSC0003DMG400007336' => 'stu', 'PGSC0003DMG400016318' => 'stu', 'PGSC0003DMG400016319' => 'stu', 'PGSC0003DMG400018074' => 'stu', 'Phvul.001G157700' => 'pvu', 'Phvul.002G148550' => 'pvu', 'Phvul.002G320200' => 'pvu', 'Phvul.003G089200' => 'pvu', 'Phvul.007G126000' => 'pvu', 'Phvul.007G126100' => 'pvu', 'Phvul.007G178000' => 'pvu', 'Phvul.007G178200' => 'pvu', 'Potri.002G043000' => 'ptr', 'Potri.002G043200' => 'ptr', 'Potri.003G123750' => 'ptr', 'Potri.005G055401' => 'ptr', 'Potri.005G219700' => 'ptr', 'Potri.005G220000' => 'ptr', 'Potri.008G161901' => 'ptr', 'Potri.008G162000' => 'ptr', 'Potri.008G162400' => 'ptr', 'Potri.010G076900' => 'ptr', 'Pp3c12_9180' => 'ppa', 'Pp3c13_19770' => 'ppa', 'Pp3c14_22950' => 'ppa', 'Pp3c16_12160' => 'ppa', 'Pp3c27_7820' => 'ppa', 'Pp3c2_3490' => 'ppa', 'Pp3c3_23700' => 'ppa', 'Pp3c3_36520' => 'ppa', 'Pp3c4_15250' => 'ppa', 'PRCOL_00007002' => 'pco', 'Prupe.1G030600' => 'ppe', 'Prupe.1G030700' => 'ppe', 'Prupe.6G345200' => 'ppe', 'Prupe.8G230300' => 'ppe', 'Prupe.8G230500' => 'ppe', 'Psat3g059600' => 'psa', 'Psat5g200920' => 'psa', 'Psat6g056440' => 'psa', 'Psat6g057360' => 'psa', 'Psat6g134120' => 'psa', 'Psat6g134160' => 'psa', 'Psat7g008640' => 'psa', 'Psat7g185240' => 'psa', 'PSO017G1330' => 'pso', 'PSO063G6097' => 'pso', 'PSO170G0835' => 'pso', 'PSO170G2499' => 'pso', 'PSO210G5058' => 'pso', 'PSO210G6154' => 'pso', 'PSO585G0031' => 'pso', 'PSO832G0264' => 'pso', 'PSO832G4288' => 'pso', 'QL03p027355' => 'qlo', 'QL03p027430' => 'qlo', 'QL04p081380' => 'qlo', 'QL06p015642' => 'qlo', 'QL06p015650' => 'qlo', 'QL06p015686' => 'qlo', 'QL12p042927' => 'qlo', 'QL93p1863_0035' => 'qlo', 'RcHm_v2.0_Chr3g0450581' => 'rch', 'RcHm_v2.0_Chr4g0390371' => 'rch', 'RcHm_v2.0_Chr4g0390381' => 'rch', 'RcHm_v2.0_Chr4g0390491' => 'rch', 'RcHm_v2.0_Chr4g0390501' => 'rch', 'RcHm_v2.0_Chr6g0289231' => 'rch', 'Rhsim04G0190400' => 'rsi', 'Rhsim04G0190500' => 'rsi', 'Rhsim04G0190600' => 'rsi', 'Rhsim13G0031400' => 'rsi', 'Rhsim13G0165600' => 'rsi', 'RhsimUnG0114600' => 'rsi', 'RhsimUnG0114700' => 'rsi', 'Sabra02G0034800' => 'sbr', 'Sabra02G0035100' => 'sbr', 'Sabra05G0168600' => 'sbr', 'Sabra05G0168800' => 'sbr', 'Sabra08G0123700' => 'sbr', 'Sabra10G0031900' => 'sbr', 'Sabra13G0039000' => 'sbr', 'SalBow2G0782' => 'sbo', 'SalBow2G1403' => 'sbo', 'SalBow4G0074' => 'sbo', 'SalBow4G2635' => 'sbo', 'SalBow5G3010' => 'sbo', 'Sc05g0000870' => 'sci', 'Sc05g0000890' => 'sci', 'Sc13g0005000' => 'sci', 'Sc13g0005030' => 'sci', 'Sc19g0003790' => 'sci', 'Sc19g0003800' => 'sci', 'Sed0003467' => 'sed', 'Sed0009355' => 'sed', 'Sed0009894' => 'sed', 'Sed0011972' => 'sed', 'Sed0021483' => 'sed', 'Sed0021750' => 'sed', 'Sed0026279' => 'sed', 'SEGI_05312' => 'sgi', 'SEGI_10112' => 'sgi', 'SEGI_15835' => 'sgi', 'SEGI_30386' => 'sgi', 'SEGI_34122' => 'sgi', 'SEGI_35063' => 'sgi', 'SGA_v2.0_scaffold101G29794' => 'sas', 'SGA_v2.0_scaffold1G00573' => 'sas', 'SGA_v2.0_scaffold79G25637' => 'sas', 'SGA_v2.0_scaffold88G27283' => 'sas', 'SGA_v2.0_scaffold88G27285' => 'sas', 'SGA_v2.0_scaffold88G27331' => 'sas', 'SHI09937' => 'shi', 'SMO119G0302' => 'smo', 'SMO137G0231' => 'smo', 'SMO367G1151' => 'smo', 'Solyc02g082000.3' => 'sly', 'Solyc06g031670.3' => 'sly', 'Solyc06g053810.3' => 'sly', 'Solyc07g025457.1' => 'sly', 'Solyc08g059740.1' => 'sly', 'Solyc08g059750.3' => 'sly', 'Solyc09g083370.3' => 'sly', 'Solyc12g038950.3' => 'sly', 'Sopen02g026630' => 'spe', 'Sopen06g018930' => 'spe', 'Sopen06g018940' => 'spe', 'Sopen08g009460' => 'spe', 'Sopen09g032290' => 'spe', 'Sp1g03080' => 'spa', 'Sp1g03090' => 'spa', 'Sp1g05480' => 'spa', 'Sp2g07860' => 'spa', 'Sp2g08430' => 'spa', 'Sp2g08440' => 'spa', 'Sp2g26200' => 'spa', 'Sp4g13170' => 'spa', 'Sp6g33840' => 'spa', 'SpUn1204_0010' => 'spa', 'TAR365G0908' => 'tar', 'TAR381G1270' => 'tar', 'TAR381G1651' => 'tar', 'TAR625G1131' => 'tar', 'TAR633G0962' => 'tar', 'TAR633G1729' => 'tar', 'TAR633G1864' => 'tar', 'TAR636G0221' => 'tar', 'TAR636G0314' => 'tar', 'TAR636G3202' => 'tar', 'THA.LOC104800805' => 'tha', 'THA.LOC104801096' => 'tha', 'THA.LOC104801555' => 'tha', 'THA.LOC104808491' => 'tha', 'THA.LOC104808595' => 'tha', 'THA.LOC104815985' => 'tha', 'THA.LOC104822250' => 'tha', 'THA.LOC104826071' => 'tha', 'Thecc.01G265200' => 'tca', 'Thecc.01G265300' => 'tca', 'Thecc.01G265700' => 'tca', 'Thecc.03G109100' => 'tca', 'Thecc.04G245900' => 'tca', 'Thecc.04G246000' => 'tca', 'Thhalv10003334m.g' => 'esa', 'Thhalv10005508m.g' => 'esa', 'Thhalv10005643m.g' => 'esa', 'Thhalv10007316m.g' => 'esa', 'Thhalv10009006m.g' => 'esa', 'Thhalv10009309m.g' => 'esa', 'Thhalv10014917m.g' => 'esa', 'Thhalv10014919m.g' => 'esa', 'Thhalv10015393m.g' => 'esa', 'Thhalv10016515m.g' => 'esa', 'Thhalv10029242m.g' => 'esa', 'TPR.G16654' => 'tpr', 'TPR.G20589' => 'tpr', 'TPR.G23029' => 'tpr', 'TPR.G27731' => 'tpr', 'TPR.G28889' => 'tpr', 'TPR.G28899' => 'tpr', 'TPR.G30846' => 'tpr', 'TPR.G5452' => 'tpr', 'TPR.G5713' => 'tpr', 'TPR.G9046' => 'tpr', 'TPR.G9061' => 'tpr', 'TWI09G1075' => 'twi', 'TWI12G0806' => 'twi', 'TWI18G0108' => 'twi', 'TWI53G1361' => 'twi', 'TWI73G0185' => 'twi', 'TWI73G0427' => 'twi', 'unitig_37.g12001' => 'ugi', 'unitig_747.g21660' => 'ugi', 'unitig_748.g7232' => 'ugi', 'unitig_748.g7315' => 'ugi', 'unitig_85.g27262' => 'ugi', 'unitig_92.g28220' => 'ugi', 'vmacro02632' => 'vma', 'vmacro08410' => 'vma', 'vmacro08411' => 'vma', 'vmacro15407' => 'vma', 'VMungo0251G3619' => 'vmu', 'VMungo0720G1204' => 'vmu', 'VMungo0720G1918' => 'vmu', 'VMungo0720G2387' => 'vmu', 'VMungo0720G2961' => 'vmu', 'VMungo1215G2154' => 'vmu', 'VMungo1383G2411' => 'vmu', 'Zm00001eb051130' => 'zma', 'Zm00001eb116830' => 'zma', 'Zm00001eb116850' => 'zma', 'Zm00001eb151740' => 'zma', 'Zm00001eb292360' => 'zma', 'Zm00001eb301640' => 'zma' ), 'gf_id' => 'HOM05D000856', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000856' ), 'data_identifier' => 'HOM05D000856', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000856', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p00010' => 'bna', 'A03p04160' => 'bna', 'A03p17160' => 'bna', 'A04p23370' => 'bna', 'A05p14860' => 'bna', 'A08p37020' => 'bna', 'A09p08050' => 'bna', 'A09p66800' => 'bna', 'A09p67940' => 'bna', 'A10p02680' => 'bna', 'A10p05320' => 'bna', 'Aa31LG1G20560' => 'aar', 'Aa31LG1G20610' => 'aar', 'Aa31LG1G7810' => 'aar', 'Aa31LG5G3590' => 'aar', 'Aa31LG5G6140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3819' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4683' => 'aag', 'Actinidia04480' => 'ach', 'Actinidia05466' => 'ach', 'Actinidia08445' => 'ach', 'Actinidia21170' => 'ach', 'Actinidia24812' => 'ach', 'Actinidia24951' => 'ach', 'Actinidia40088' => 'ach', 'Ah.02g111660' => 'amhyb', 'Ah.11g048900' => 'amhyb', 'Ah.11g049910' => 'amhyb', 'AL1G13870' => 'aly', 'AL1G13880' => 'aly', 'AL1G16760' => 'aly', 'AL390U10020' => 'aly', 'AL4G25520' => 'aly', 'AL6G19890' => 'aly', 'AL6G19900' => 'aly', 'AL6G19910' => 'aly', 'AL8G40100' => 'aly', 'Aqoxy2G03562' => 'aox', 'Aqoxy5G00316' => 'aox', 'Aqoxy5G00926' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1628KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1H403S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2FU6SJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.882I6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8YRY2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YN1SN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AF70II' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZA8L1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F916KL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHRD8H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KTZ8QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S22EMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8M29T' => 'arhy', 'AT1G04270' => 'ath', 'AT1G04280' => 'ath', 'AT1G06750' => 'ath', 'AT1G33850' => 'ath', 'AT2G30630' => 'ath', 'AT5G09490' => 'ath', 'AT5G09500' => 'ath', 'AT5G09510' => 'ath', 'AT5G43640' => 'ath', 'AT5G63070' => 'ath', 'ATR0605G315' => 'atr', 'Atru.chr11.175' => 'acertr', 'Atru.chr11.653' => 'acertr', 'Atru.chr3.1616' => 'acertr', 'Atru.chr4.2230' => 'acertr', 'Atru.chr4.2232' => 'acertr', 'Atru.chr5.1598' => 'acertr', 'Atru.chr5.1600' => 'acertr', 'Atru.chr5.2188' => 'acertr', 'AUR62008326' => 'cqu', 'AUR62011922' => 'cqu', 'AUR62011924' => 'cqu', 'AUR62021771' => 'cqu', 'AUR62032237' => 'cqu', 'AUR62032240' => 'cqu', 'BcaB01g05572' => 'bca', 'BcaB02g10337' => 'bca', 'BcaB04g19944' => 'bca', 'BcaB05g21548' => 'bca', 'BcaB05g21549' => 'bca', 'BcaB05g23227' => 'bca', 'BcaB06g26256' => 'bca', 'BcaB06g26257' => 'bca', 'BcaB06g28379' => 'bca', 'BcaC02g11159' => 'bca', 'BcaC03g13258' => 'bca', 'BcaC03g13259' => 'bca', 'BcaC05g24456' => 'bca', 'BcaC05g24457' => 'bca', 'BcaC07g36922' => 'bca', 'BcaC07g36923' => 'bca', 'BcaC07g42050' => 'bca', 'BcaC07g42176' => 'bca', 'BcaC07g42195' => 'bca', 'BcaC07g42196' => 'bca', 'BcaNung06674' => 'bca', 'BolC2t06351H' => 'bol', 'BolC2t06352H' => 'bol', 'BolC3t12993H' => 'bol', 'BolC4t23525H' => 'bol', 'BolC4t27475H' => 'bol', 'BolC5t29025H' => 'bol', 'BolC5t29026H' => 'bol', 'BolC8t46898H' => 'bol', 'BolC8t46899H' => 'bol', 'BolC8t52630H' => 'bol', 'BolC8t52765H' => 'bol', 'BolC9t53824H' => 'bol', 'BraA03t09760Z' => 'bra', 'BraA03t10990Z' => 'bra', 'BraA05t20413Z' => 'bra', 'BraA08t35602Z' => 'bra', 'BraA09t36458Z' => 'bra', 'BraA09t42018Z' => 'bra', 'BraA09t42129Z' => 'bra', 'BraA10t42536Z' => 'bra', 'BraA10t42537Z' => 'bra', 'C01p10690' => 'bna', 'C02p03890' => 'bna', 'C02p03900' => 'bna', 'C03p04620' => 'bna', 'C04p19870' => 'bna', 'C04p59670' => 'bna', 'C05p02460' => 'bna', 'C05p02470' => 'bna', 'C08p00980' => 'bna', 'C08p00990' => 'bna', 'C08p51030' => 'bna', 'C08p52360' => 'bna', 'C09p09120' => 'bna', 'CAN.G19.15' => 'can', 'CAN.G251.10' => 'can', 'CAN.G251.9' => 'can', 'CAN.G398.24' => 'can', 'CAN.G410.32' => 'can', 'CAN.G881.2' => 'can', 'CANSAT01G3025' => 'cansat', 'CANSAT78G1211' => 'cansat', 'CANSAT78G1218' => 'cansat', 'CANSAT78G1521' => 'cansat', 'CANSAT78G1670' => 'cansat', 'CARHR003600' => 'chi', 'CARHR003610' => 'chi', 'CARHR006290' => 'chi', 'CARHR006430' => 'chi', 'CARHR124110' => 'chi', 'CARHR203870' => 'chi', 'CARHR203880' => 'chi', 'CARHR203890' => 'chi', 'CARHR276880' => 'chi', 'Carub.0001s0346' => 'cru', 'Carub.0001s0347' => 'cru', 'Carub.0001s0607' => 'cru', 'Carub.0003s2768' => 'cru', 'Carub.0003s2769' => 'cru', 'Carub.0004s1178' => 'cru', 'Carub.0006s0806' => 'cru', 'Carub.0006s0807' => 'cru', 'Carub.0006s0808' => 'cru', 'Carub.0008s0501' => 'cru', 'Carub.0008s2379' => 'cru', 'Ca_08655_v3' => 'car', 'Ca_08922_v3' => 'car', 'Ca_08923_v3' => 'car', 'Ca_09119_v3' => 'car', 'Ca_09703_v3' => 'car', 'Ca_09705_v3' => 'car', 'Ca_09835_v3' => 'car', 'Ca_26403_v3' => 'car', 'Ca_30719_v3' => 'car', 'CBR_g17958' => 'cbr', 'CBR_g40516' => 'cbr', 'Cc00_g05350' => 'ccan', 'Cc01_g18690' => 'ccan', 'Cc03_g04830' => 'ccan', 'Cc03_g04850' => 'ccan', 'CDE02G4469' => 'cde', 'CDE06G0883' => 'cde', 'CDE06G1295' => 'cde', 'CDE06G1390' => 'cde', 'CDE07G0584' => 'cde', 'CDE07G1084' => 'cde', 'CDE08G1259' => 'cde', 'Cfa002341' => 'cfa', 'Cfa024337' => 'cfa', 'Ciclev10004749m.g' => 'ccl', 'Ciclev10006127m.g' => 'ccl', 'Ciclev10019720m.g' => 'ccl', 'Ciclev10022652m.g' => 'ccl', 'CiPaw.01G190400' => 'cil', 'CiPaw.01G190500' => 'cil', 'CiPaw.02G116400' => 'cil', 'CiPaw.02G116500' => 'cil', 'CiPaw.04G183000' => 'cil', 'CiPaw.04G183300' => 'cil', 'ClCG05G004610' => 'cla', 'ClCG05G004620' => 'cla', 'ClCG06G006730' => 'cla', 'ClCG06G006740' => 'cla', 'ClCG11G003690' => 'cla', 'COL.COLO4_08276' => 'col', 'COL.COLO4_08277' => 'col', 'COL.COLO4_15787' => 'col', 'COL.COLO4_15789' => 'col', 'Cpa.g.c44815' => 'cpa', 'Cpa.g.sc52.144' => 'cpa', 'Cpa.g.sc58.46' => 'cpa', 'Cpa.g.sc58.47' => 'cpa', 'Cre08.g360900' => 'cre', 'CsaV3_2G013030' => 'csa', 'CsaV3_2G013050' => 'csa', 'CsaV3_2G015620' => 'csa', 'CsaV3_3G012590' => 'csa', 'CsaV3_3G012600' => 'csa', 'CSS0001641' => 'camsi', 'CSS0008310' => 'camsi', 'CSS0013011' => 'camsi', 'CSS0017147' => 'camsi', 'CSS0022970' => 'camsi', 'CSS0025655' => 'camsi', 'CSS0028665' => 'camsi', 'CSS0029117' => 'camsi', 'CSS0032024' => 'camsi', 'CSS0039681' => 'camsi', 'CSS0046516' => 'camsi', 'CSS0050307' => 'camsi', 'DCAR_005871' => 'dca', 'DCAR_007342' => 'dca', 'DCAR_024228' => 'dca', 'DCAR_027277' => 'dca', 'DCAR_030718' => 'dca', 'Dinv20287' => 'din', 'Dinv22461' => 'din', 'Dinv22464' => 'din', 'Dinv29912' => 'din', 'Dinv29913' => 'din', 'Dinv34580' => 'din', 'Dinv34582' => 'din', 'Dinv44632' => 'din', 'Duzib052G0266' => 'dzi', 'Duzib133G0907' => 'dzi', 'Duzib133G1034' => 'dzi', 'Duzib138G0207' => 'dzi', 'Duzib138G0491' => 'dzi', 'Duzib151G0812' => 'dzi', 'Duzib151G1166' => 'dzi', 'Duzib168G0192' => 'dzi', 'Duzib211G0077' => 'dzi', 'Duzib212G0429' => 'dzi', 'Duzib212G0472' => 'dzi', 'ECA233G2617' => 'eca', 'ECA236G4188' => 'eca', 'ECA240G0936' => 'eca', 'ECA240G1129' => 'eca', 'ECA247G0623' => 'eca', 'EL10Ac5g10451' => 'bvu', 'EL10Ac5g10453' => 'bvu', 'EL10Ac5g10894' => 'bvu', 'Eucgr.H00192' => 'egr', 'Eucgr.H00193' => 'egr', 'Eucgr.H00194' => 'egr', 'Eucgr.J01562' => 'egr', 'Eucgr.K03301' => 'egr', 'FAN02G0632' => 'fan', 'FAN05G5378' => 'fan', 'FAN09G3247' => 'fan', 'FAN12G0435' => 'fan', 'FAN12G2426' => 'fan', 'FAN14G1707' => 'fan', 'FAN14G4725' => 'fan', 'FAN15G2071' => 'fan', 'FAN17G3065' => 'fan', 'FAN19G1376' => 'fan', 'FAN20G0354' => 'fan', 'FAN20G2429' => 'fan', 'FAN20G2658' => 'fan', 'FAN24G2343' => 'fan', 'FAN27G2362' => 'fan', 'FAN28G1765' => 'fan', 'FvH4_1g16020' => 'fve', 'FvH4_2g04890' => 'fve', 'FvH4_2g22270' => 'fve', 'FvH4_4g02630' => 'fve', 'FvH4_4g02640' => 'fve', 'FvH4_6g02650' => 'fve', 'Glyma.02G140600' => 'gma', 'Glyma.03G159900' => 'gma', 'Glyma.05G234800' => 'gma', 'Glyma.07G269600' => 'gma', 'Glyma.08G042300' => 'gma', 'Glyma.10G033500' => 'gma', 'Glyma.10G185200' => 'gma', 'Glyma.17G004300' => 'gma', 'Glyma.19G161900' => 'gma', 'Glyma.20G205100' => 'gma', 'Glyma.20G205200' => 'gma', 'Gohir.A01G139101' => 'ghi', 'Gohir.A02G035600' => 'ghi', 'Gohir.A02G117901' => 'ghi', 'Gohir.A07G210100' => 'ghi', 'Gohir.A07G210200' => 'ghi', 'Gohir.A08G061100' => 'ghi', 'Gohir.A09G223000' => 'ghi', 'Gohir.A09G223100' => 'ghi', 'Gohir.A10G113900' => 'ghi', 'Gohir.A10G114000' => 'ghi', 'Gohir.D02G042300' => 'ghi', 'Gohir.D07G216100' => 'ghi', 'Gohir.D07G216200' => 'ghi', 'Gohir.D08G070400' => 'ghi', 'Gohir.D09G225000' => 'ghi', 'Gohir.D09G225100' => 'ghi', 'Gohir.D10G152300' => 'ghi', 'Gohir.D10G153200' => 'ghi', 'Gohir.D11G133701' => 'ghi', 'Gorai.004G074100' => 'gra', 'Gorai.005G046800' => 'gra', 'Gorai.006G246500' => 'gra', 'Gorai.006G246600' => 'gra', 'Gorai.007G142900' => 'gra', 'Gorai.011G171000' => 'gra', 'Gorai.011G171100' => 'gra', 'Gorai.013G104300' => 'gra', 'Gorai.013G104400' => 'gra', 'GSVIVG01000754001' => 'vvi', 'GSVIVG01000756001' => 'vvi', 'GSVIVG01010903001' => 'vvi', 'GSVIVG01017623001' => 'vvi', 'GSVIVG01018113001' => 'vvi', 'GSVIVG01018116001' => 'vvi', 'GSVIVG01018118001' => 'vvi', 'HanXRQChr03g0076211' => 'han', 'HanXRQChr03g0092431' => 'han', 'HanXRQChr03g0092441' => 'han', 'HanXRQChr03g0092591' => 'han', 'HanXRQChr03g0092671' => 'han', 'HanXRQChr03g0092681' => 'han', 'HanXRQChr03g0092691' => 'han', 'HanXRQChr03g0092701' => 'han', 'HanXRQChr03g0092721' => 'han', 'HanXRQChr03g0092731' => 'han', 'HanXRQChr04g0113681' => 'han', 'HanXRQChr10g0281371' => 'han', 'HanXRQChr11g0337141' => 'han', 'HanXRQChr13g0424521' => 'han', 'HanXRQChr13g0424531' => 'han', 'HanXRQChr13g0424541' => 'han', 'HanXRQChr16g0498221' => 'han', 'Haze_04377' => 'cav', 'Haze_11298' => 'cav', 'Haze_24547' => 'cav', 'Haze_24550' => 'cav', 'Haze_26587' => 'cav', 'Hma1.2p1_0650F.1_g195410' => 'hma', 'Hma1.2p1_0893F.1_g233470' => 'hma', 'HPP92_006508' => 'vpl', 'HPP92_024780' => 'vpl', 'Hund02688' => 'sun', 'Hund09380' => 'sun', 'Hund09381' => 'sun', 'Hund09832' => 'sun', 'Hund09833' => 'sun', 'Hund11351' => 'sun', 'Hund11513' => 'sun', 'Lalb_Chr06g0162591' => 'lal', 'Lalb_Chr06g0162601' => 'lal', 'Lalb_Chr06g0169321' => 'lal', 'Lalb_Chr09g0330951' => 'lal', 'Lalb_Chr16g0387631' => 'lal', 'Lalb_Chr21g0306241' => 'lal', 'Lalb_Chr25g0290051' => 'lal', 'Lalb_Chr25g0290061' => 'lal', 'Lalb_Chr25g0290071' => 'lal', 'Lj1g0003876' => 'lja', 'Lj1P1207T36' => 'lonja', 'Lj2C1156G12' => 'lonja', 'Lj3A793G39' => 'lonja', 'Lj3C580G2' => 'lonja', 'Lj3C780G2' => 'lonja', 'Lj3C780T4' => 'lonja', 'Lj3C793G9' => 'lonja', 'Lj4g0012960' => 'lja', 'Lj5g0021252' => 'lja', 'Lj5g0021484' => 'lja', 'Lj5g0024528' => 'lja', 'Lj6A399T12' => 'lonja', 'Lj6A656G65' => 'lonja', 'Lsat_1_v5_gn_3_125500' => 'lsa', 'Lsat_1_v5_gn_3_125540' => 'lsa', 'Lsat_1_v5_gn_5_72701' => 'lsa', 'Lsat_1_v5_gn_8_91560' => 'lsa', 'Lsat_1_v5_gn_9_9640' => 'lsa', 'Manes.01G200600' => 'mes', 'Manes.01G200700' => 'mes', 'Manes.03G168900' => 'mes', 'Manes.03G169000' => 'mes', 'Manes.05G085801' => 'mes', 'Manes.05G086200' => 'mes', 'Manes.15G036700' => 'mes', 'Manes.15G036900' => 'mes', 'Mapoly0004s0172' => 'mpo', 'Mapoly0023s0001' => 'mpo', 'Mapoly0142s0012' => 'mpo', 'MBI01_g32854_MAGBIO' => 'mbi', 'MBI11_g24427_MAGBIO' => 'mbi', 'MBI11_g47319_MAGBIO' => 'mbi', 'MCO01G433' => 'mco', 'MD00G1187800' => 'mdo', 'MD04G1226500' => 'mdo', 'MD05G1203900' => 'mdo', 'MD10G1191100' => 'mdo', 'MD12G1243500' => 'mdo', 'MD13G1207000' => 'mdo', 'MD13G1207100' => 'mdo', 'MD16G1208600' => 'mdo', 'Medtr1g050352' => 'mtr', 'Medtr1g070385' => 'mtr', 'Medtr1g070450' => 'mtr', 'Medtr1g075200' => 'mtr', 'Medtr1g075250' => 'mtr', 'Medtr1g075260' => 'mtr', 'Medtr1g475250' => 'mtr', 'Medtr4g075450' => 'mtr', 'Medtr7g096300' => 'mtr', 'Medtr8g105110' => 'mtr', 'MELO3C006470.2' => 'cme', 'MELO3C006471.2' => 'cme', 'MELO3C020772.2' => 'cme', 'MELO3C026780.2' => 'cme', 'MELO3C026781.2' => 'cme', 'Migut.D00390' => 'egut', 'Migut.G00435' => 'egut', 'Migut.G00436' => 'egut', 'Migut.G00718' => 'egut', 'MSTRG.21891' => 'ama', 'MSTRG.26910' => 'ama', 'MSTRG.4099' => 'ama', 'MSTRG.9925' => 'ama', 'Nitab4.5_0000165g0010' => 'nta', 'Nitab4.5_0000209g0180' => 'nta', 'Nitab4.5_0000244g0440' => 'nta', 'Nitab4.5_0000525g0220' => 'nta', 'Nitab4.5_0001597g0020' => 'nta', 'Nitab4.5_0001878g0040' => 'nta', 'Nitab4.5_0001878g0060' => 'nta', 'Nitab4.5_0002838g0100' => 'nta', 'Nitab4.5_0002838g0120' => 'nta', 'Nitab4.5_0004798g0030' => 'nta', 'Nitab4.5_0005420g0010' => 'nta', 'Nitab4.5_0005507g0010' => 'nta', 'Nitab4.5_0005574g0020' => 'nta', 'Nitab4.5_0005838g0010' => 'nta', 'Nitab4.5_0010580g0020' => 'nta', 'Nn1g02599' => 'nnu', 'Nn1g02608' => 'nnu', 'Nn3g17742' => 'nnu', 'Nn3g19534' => 'nnu', 'Nn3g19535' => 'nnu', 'Oeu008790.1' => 'oeu', 'Oeu008792.1' => 'oeu', 'Oeu032590.1' => 'oeu', 'Oeu035349.1' => 'oeu', 'Oeu049791.1' => 'oeu', 'Os01g0774500' => 'osa', 'Os03g0628800' => 'osa', 'Os03g0798600' => 'osa', 'Os05g0508800' => 'osa', 'Peaxi162Scf00036g02018' => 'pax', 'Peaxi162Scf00578g00032' => 'pax', 'Peaxi162Scf00578g00317' => 'pax', 'Peaxi162Scf00785g00114' => 'pax', 'Peaxi162Scf00813g00119' => 'pax', 'Peaxi162Scf00906g00227' => 'pax', 'PGR004G0875' => 'pgr', 'PGR004G2424' => 'pgr', 'PGR031G1239' => 'pgr', 'PGR031G2474' => 'pgr', 'PGR044G0423' => 'pgr', 'PGSC0003DMG400001128' => 'stu', 'PGSC0003DMG400007336' => 'stu', 'PGSC0003DMG400016318' => 'stu', 'PGSC0003DMG400016319' => 'stu', 'PGSC0003DMG400018074' => 'stu', 'Phvul.001G157700' => 'pvu', 'Phvul.002G148550' => 'pvu', 'Phvul.002G320200' => 'pvu', 'Phvul.003G089200' => 'pvu', 'Phvul.007G126000' => 'pvu', 'Phvul.007G126100' => 'pvu', 'Phvul.007G178000' => 'pvu', 'Phvul.007G178200' => 'pvu', 'Potri.002G043000' => 'ptr', 'Potri.002G043200' => 'ptr', 'Potri.003G123750' => 'ptr', 'Potri.005G055401' => 'ptr', 'Potri.005G219700' => 'ptr', 'Potri.005G220000' => 'ptr', 'Potri.008G161901' => 'ptr', 'Potri.008G162000' => 'ptr', 'Potri.008G162400' => 'ptr', 'Potri.010G076900' => 'ptr', 'Pp3c12_9180' => 'ppa', 'Pp3c13_19770' => 'ppa', 'Pp3c14_22950' => 'ppa', 'Pp3c16_12160' => 'ppa', 'Pp3c27_7820' => 'ppa', 'Pp3c2_3490' => 'ppa', 'Pp3c3_23700' => 'ppa', 'Pp3c3_36520' => 'ppa', 'Pp3c4_15250' => 'ppa', 'PRCOL_00007002' => 'pco', 'Prupe.1G030600' => 'ppe', 'Prupe.1G030700' => 'ppe', 'Prupe.6G345200' => 'ppe', 'Prupe.8G230300' => 'ppe', 'Prupe.8G230500' => 'ppe', 'Psat3g059600' => 'psa', 'Psat5g200920' => 'psa', 'Psat6g056440' => 'psa', 'Psat6g057360' => 'psa', 'Psat6g134120' => 'psa', 'Psat6g134160' => 'psa', 'Psat7g008640' => 'psa', 'Psat7g185240' => 'psa', 'PSO017G1330' => 'pso', 'PSO063G6097' => 'pso', 'PSO170G0835' => 'pso', 'PSO170G2499' => 'pso', 'PSO210G5058' => 'pso', 'PSO210G6154' => 'pso', 'PSO585G0031' => 'pso', 'PSO832G0264' => 'pso', 'PSO832G4288' => 'pso', 'QL03p027355' => 'qlo', 'QL03p027430' => 'qlo', 'QL04p081380' => 'qlo', 'QL06p015642' => 'qlo', 'QL06p015650' => 'qlo', 'QL06p015686' => 'qlo', 'QL12p042927' => 'qlo', 'QL93p1863_0035' => 'qlo', 'RcHm_v2.0_Chr3g0450581' => 'rch', 'RcHm_v2.0_Chr4g0390371' => 'rch', 'RcHm_v2.0_Chr4g0390381' => 'rch', 'RcHm_v2.0_Chr4g0390491' => 'rch', 'RcHm_v2.0_Chr4g0390501' => 'rch', 'RcHm_v2.0_Chr6g0289231' => 'rch', 'Rhsim04G0190400' => 'rsi', 'Rhsim04G0190500' => 'rsi', 'Rhsim04G0190600' => 'rsi', 'Rhsim13G0031400' => 'rsi', 'Rhsim13G0165600' => 'rsi', 'RhsimUnG0114600' => 'rsi', 'RhsimUnG0114700' => 'rsi', 'Sabra02G0034800' => 'sbr', 'Sabra02G0035100' => 'sbr', 'Sabra05G0168600' => 'sbr', 'Sabra05G0168800' => 'sbr', 'Sabra08G0123700' => 'sbr', 'Sabra10G0031900' => 'sbr', 'Sabra13G0039000' => 'sbr', 'SalBow2G0782' => 'sbo', 'SalBow2G1403' => 'sbo', 'SalBow4G0074' => 'sbo', 'SalBow4G2635' => 'sbo', 'SalBow5G3010' => 'sbo', 'Sc05g0000870' => 'sci', 'Sc05g0000890' => 'sci', 'Sc13g0005000' => 'sci', 'Sc13g0005030' => 'sci', 'Sc19g0003790' => 'sci', 'Sc19g0003800' => 'sci', 'Sed0003467' => 'sed', 'Sed0009355' => 'sed', 'Sed0009894' => 'sed', 'Sed0011972' => 'sed', 'Sed0021483' => 'sed', 'Sed0021750' => 'sed', 'Sed0026279' => 'sed', 'SEGI_05312' => 'sgi', 'SEGI_10112' => 'sgi', 'SEGI_15835' => 'sgi', 'SEGI_30386' => 'sgi', 'SEGI_34122' => 'sgi', 'SEGI_35063' => 'sgi', 'SGA_v2.0_scaffold101G29794' => 'sas', 'SGA_v2.0_scaffold1G00573' => 'sas', 'SGA_v2.0_scaffold79G25637' => 'sas', 'SGA_v2.0_scaffold88G27283' => 'sas', 'SGA_v2.0_scaffold88G27285' => 'sas', 'SGA_v2.0_scaffold88G27331' => 'sas', 'SHI09937' => 'shi', 'SMO119G0302' => 'smo', 'SMO137G0231' => 'smo', 'SMO367G1151' => 'smo', 'Solyc02g082000.3' => 'sly', 'Solyc06g031670.3' => 'sly', 'Solyc06g053810.3' => 'sly', 'Solyc07g025457.1' => 'sly', 'Solyc08g059740.1' => 'sly', 'Solyc08g059750.3' => 'sly', 'Solyc09g083370.3' => 'sly', 'Solyc12g038950.3' => 'sly', 'Sopen02g026630' => 'spe', 'Sopen06g018930' => 'spe', 'Sopen06g018940' => 'spe', 'Sopen08g009460' => 'spe', 'Sopen09g032290' => 'spe', 'Sp1g03080' => 'spa', 'Sp1g03090' => 'spa', 'Sp1g05480' => 'spa', 'Sp2g07860' => 'spa', 'Sp2g08430' => 'spa', 'Sp2g08440' => 'spa', 'Sp2g26200' => 'spa', 'Sp4g13170' => 'spa', 'Sp6g33840' => 'spa', 'SpUn1204_0010' => 'spa', 'TAR365G0908' => 'tar', 'TAR381G1270' => 'tar', 'TAR381G1651' => 'tar', 'TAR625G1131' => 'tar', 'TAR633G0962' => 'tar', 'TAR633G1729' => 'tar', 'TAR633G1864' => 'tar', 'TAR636G0221' => 'tar', 'TAR636G0314' => 'tar', 'TAR636G3202' => 'tar', 'THA.LOC104800805' => 'tha', 'THA.LOC104801096' => 'tha', 'THA.LOC104801555' => 'tha', 'THA.LOC104808491' => 'tha', 'THA.LOC104808595' => 'tha', 'THA.LOC104815985' => 'tha', 'THA.LOC104822250' => 'tha', 'THA.LOC104826071' => 'tha', 'Thecc.01G265200' => 'tca', 'Thecc.01G265300' => 'tca', 'Thecc.01G265700' => 'tca', 'Thecc.03G109100' => 'tca', 'Thecc.04G245900' => 'tca', 'Thecc.04G246000' => 'tca', 'Thhalv10003334m.g' => 'esa', 'Thhalv10005508m.g' => 'esa', 'Thhalv10005643m.g' => 'esa', 'Thhalv10007316m.g' => 'esa', 'Thhalv10009006m.g' => 'esa', 'Thhalv10009309m.g' => 'esa', 'Thhalv10014917m.g' => 'esa', 'Thhalv10014919m.g' => 'esa', 'Thhalv10015393m.g' => 'esa', 'Thhalv10016515m.g' => 'esa', 'Thhalv10029242m.g' => 'esa', 'TPR.G16654' => 'tpr', 'TPR.G20589' => 'tpr', 'TPR.G23029' => 'tpr', 'TPR.G27731' => 'tpr', 'TPR.G28889' => 'tpr', 'TPR.G28899' => 'tpr', 'TPR.G30846' => 'tpr', 'TPR.G5452' => 'tpr', 'TPR.G5713' => 'tpr', 'TPR.G9046' => 'tpr', 'TPR.G9061' => 'tpr', 'TWI09G1075' => 'twi', 'TWI12G0806' => 'twi', 'TWI18G0108' => 'twi', 'TWI53G1361' => 'twi', 'TWI73G0185' => 'twi', 'TWI73G0427' => 'twi', 'unitig_37.g12001' => 'ugi', 'unitig_747.g21660' => 'ugi', 'unitig_748.g7232' => 'ugi', 'unitig_748.g7315' => 'ugi', 'unitig_85.g27262' => 'ugi', 'unitig_92.g28220' => 'ugi', 'vmacro02632' => 'vma', 'vmacro08410' => 'vma', 'vmacro08411' => 'vma', 'vmacro15407' => 'vma', 'VMungo0251G3619' => 'vmu', 'VMungo0720G1204' => 'vmu', 'VMungo0720G1918' => 'vmu', 'VMungo0720G2387' => 'vmu', 'VMungo0720G2961' => 'vmu', 'VMungo1215G2154' => 'vmu', 'VMungo1383G2411' => 'vmu', 'Zm00001eb051130' => 'zma', 'Zm00001eb116830' => 'zma', 'Zm00001eb116850' => 'zma', 'Zm00001eb151740' => 'zma', 'Zm00001eb292360' => 'zma', 'Zm00001eb301640' => 'zma' ) $gf_id = 'HOM05D000856' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000856' ) $data_identifier = 'HOM05D000856' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 13, 'ath' => (int) 10, 'atr' => (int) 1, 'acertr' => (int) 8, 'cqu' => (int) 6, 'bca' => (int) 21, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 11, 'car' => (int) 9, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 8, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 5, 'fan' => (int) 16, 'fve' => (int) 6, 'gma' => (int) 11, 'ghi' => (int) 19, 'gra' => (int) 9, 'vvi' => (int) 7, 'han' => (int) 17, 'cav' => (int) 5, 'hma' => (int) 2, 'vpl' => (int) 2, 'sun' => (int) 7, 'lal' => (int) 9, 'lja' => (int) 5, 'lonja' => (int) 9, 'lsa' => (int) 5, 'mes' => (int) 8, 'mpo' => (int) 3, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 10, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 15, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 9, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 9, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 6, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 5, 'spa' => (int) 10, 'tar' => (int) 10, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 11, 'tpr' => (int) 11, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 4, 'vmu' => (int) 7, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb301640' $species_info = array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ) $local_species = 'atr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000856', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p00010' => 'bna', 'A03p04160' => 'bna', 'A03p17160' => 'bna', 'A04p23370' => 'bna', 'A05p14860' => 'bna', 'A08p37020' => 'bna', 'A09p08050' => 'bna', 'A09p66800' => 'bna', 'A09p67940' => 'bna', 'A10p02680' => 'bna', 'A10p05320' => 'bna', 'Aa31LG1G20560' => 'aar', 'Aa31LG1G20610' => 'aar', 'Aa31LG1G7810' => 'aar', 'Aa31LG5G3590' => 'aar', 'Aa31LG5G6140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3819' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4683' => 'aag', 'Actinidia04480' => 'ach', 'Actinidia05466' => 'ach', 'Actinidia08445' => 'ach', 'Actinidia21170' => 'ach', 'Actinidia24812' => 'ach', 'Actinidia24951' => 'ach', 'Actinidia40088' => 'ach', 'Ah.02g111660' => 'amhyb', 'Ah.11g048900' => 'amhyb', 'Ah.11g049910' => 'amhyb', 'AL1G13870' => 'aly', 'AL1G13880' => 'aly', 'AL1G16760' => 'aly', 'AL390U10020' => 'aly', 'AL4G25520' => 'aly', 'AL6G19890' => 'aly', 'AL6G19900' => 'aly', 'AL6G19910' => 'aly', 'AL8G40100' => 'aly', 'Aqoxy2G03562' => 'aox', 'Aqoxy5G00316' => 'aox', 'Aqoxy5G00926' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1628KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1H403S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2FU6SJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.882I6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8YRY2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YN1SN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AF70II' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZA8L1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F916KL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHRD8H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KTZ8QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S22EMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8M29T' => 'arhy', 'AT1G04270' => 'ath', 'AT1G04280' => 'ath', 'AT1G06750' => 'ath', 'AT1G33850' => 'ath', 'AT2G30630' => 'ath', 'AT5G09490' => 'ath', 'AT5G09500' => 'ath', 'AT5G09510' => 'ath', 'AT5G43640' => 'ath', 'AT5G63070' => 'ath', 'ATR0605G315' => 'atr', 'Atru.chr11.175' => 'acertr', 'Atru.chr11.653' => 'acertr', 'Atru.chr3.1616' => 'acertr', 'Atru.chr4.2230' => 'acertr', 'Atru.chr4.2232' => 'acertr', 'Atru.chr5.1598' => 'acertr', 'Atru.chr5.1600' => 'acertr', 'Atru.chr5.2188' => 'acertr', 'AUR62008326' => 'cqu', 'AUR62011922' => 'cqu', 'AUR62011924' => 'cqu', 'AUR62021771' => 'cqu', 'AUR62032237' => 'cqu', 'AUR62032240' => 'cqu', 'BcaB01g05572' => 'bca', 'BcaB02g10337' => 'bca', 'BcaB04g19944' => 'bca', 'BcaB05g21548' => 'bca', 'BcaB05g21549' => 'bca', 'BcaB05g23227' => 'bca', 'BcaB06g26256' => 'bca', 'BcaB06g26257' => 'bca', 'BcaB06g28379' => 'bca', 'BcaC02g11159' => 'bca', 'BcaC03g13258' => 'bca', 'BcaC03g13259' => 'bca', 'BcaC05g24456' => 'bca', 'BcaC05g24457' => 'bca', 'BcaC07g36922' => 'bca', 'BcaC07g36923' => 'bca', 'BcaC07g42050' => 'bca', 'BcaC07g42176' => 'bca', 'BcaC07g42195' => 'bca', 'BcaC07g42196' => 'bca', 'BcaNung06674' => 'bca', 'BolC2t06351H' => 'bol', 'BolC2t06352H' => 'bol', 'BolC3t12993H' => 'bol', 'BolC4t23525H' => 'bol', 'BolC4t27475H' => 'bol', 'BolC5t29025H' => 'bol', 'BolC5t29026H' => 'bol', 'BolC8t46898H' => 'bol', 'BolC8t46899H' => 'bol', 'BolC8t52630H' => 'bol', 'BolC8t52765H' => 'bol', 'BolC9t53824H' => 'bol', 'BraA03t09760Z' => 'bra', 'BraA03t10990Z' => 'bra', 'BraA05t20413Z' => 'bra', 'BraA08t35602Z' => 'bra', 'BraA09t36458Z' => 'bra', 'BraA09t42018Z' => 'bra', 'BraA09t42129Z' => 'bra', 'BraA10t42536Z' => 'bra', 'BraA10t42537Z' => 'bra', 'C01p10690' => 'bna', 'C02p03890' => 'bna', 'C02p03900' => 'bna', 'C03p04620' => 'bna', 'C04p19870' => 'bna', 'C04p59670' => 'bna', 'C05p02460' => 'bna', 'C05p02470' => 'bna', 'C08p00980' => 'bna', 'C08p00990' => 'bna', 'C08p51030' => 'bna', 'C08p52360' => 'bna', 'C09p09120' => 'bna', 'CAN.G19.15' => 'can', 'CAN.G251.10' => 'can', 'CAN.G251.9' => 'can', 'CAN.G398.24' => 'can', 'CAN.G410.32' => 'can', 'CAN.G881.2' => 'can', 'CANSAT01G3025' => 'cansat', 'CANSAT78G1211' => 'cansat', 'CANSAT78G1218' => 'cansat', 'CANSAT78G1521' => 'cansat', 'CANSAT78G1670' => 'cansat', 'CARHR003600' => 'chi', 'CARHR003610' => 'chi', 'CARHR006290' => 'chi', 'CARHR006430' => 'chi', 'CARHR124110' => 'chi', 'CARHR203870' => 'chi', 'CARHR203880' => 'chi', 'CARHR203890' => 'chi', 'CARHR276880' => 'chi', 'Carub.0001s0346' => 'cru', 'Carub.0001s0347' => 'cru', 'Carub.0001s0607' => 'cru', 'Carub.0003s2768' => 'cru', 'Carub.0003s2769' => 'cru', 'Carub.0004s1178' => 'cru', 'Carub.0006s0806' => 'cru', 'Carub.0006s0807' => 'cru', 'Carub.0006s0808' => 'cru', 'Carub.0008s0501' => 'cru', 'Carub.0008s2379' => 'cru', 'Ca_08655_v3' => 'car', 'Ca_08922_v3' => 'car', 'Ca_08923_v3' => 'car', 'Ca_09119_v3' => 'car', 'Ca_09703_v3' => 'car', 'Ca_09705_v3' => 'car', 'Ca_09835_v3' => 'car', 'Ca_26403_v3' => 'car', 'Ca_30719_v3' => 'car', 'CBR_g17958' => 'cbr', 'CBR_g40516' => 'cbr', 'Cc00_g05350' => 'ccan', 'Cc01_g18690' => 'ccan', 'Cc03_g04830' => 'ccan', 'Cc03_g04850' => 'ccan', 'CDE02G4469' => 'cde', 'CDE06G0883' => 'cde', 'CDE06G1295' => 'cde', 'CDE06G1390' => 'cde', 'CDE07G0584' => 'cde', 'CDE07G1084' => 'cde', 'CDE08G1259' => 'cde', 'Cfa002341' => 'cfa', 'Cfa024337' => 'cfa', 'Ciclev10004749m.g' => 'ccl', 'Ciclev10006127m.g' => 'ccl', 'Ciclev10019720m.g' => 'ccl', 'Ciclev10022652m.g' => 'ccl', 'CiPaw.01G190400' => 'cil', 'CiPaw.01G190500' => 'cil', 'CiPaw.02G116400' => 'cil', 'CiPaw.02G116500' => 'cil', 'CiPaw.04G183000' => 'cil', 'CiPaw.04G183300' => 'cil', 'ClCG05G004610' => 'cla', 'ClCG05G004620' => 'cla', 'ClCG06G006730' => 'cla', 'ClCG06G006740' => 'cla', 'ClCG11G003690' => 'cla', 'COL.COLO4_08276' => 'col', 'COL.COLO4_08277' => 'col', 'COL.COLO4_15787' => 'col', 'COL.COLO4_15789' => 'col', 'Cpa.g.c44815' => 'cpa', 'Cpa.g.sc52.144' => 'cpa', 'Cpa.g.sc58.46' => 'cpa', 'Cpa.g.sc58.47' => 'cpa', 'Cre08.g360900' => 'cre', 'CsaV3_2G013030' => 'csa', 'CsaV3_2G013050' => 'csa', 'CsaV3_2G015620' => 'csa', 'CsaV3_3G012590' => 'csa', 'CsaV3_3G012600' => 'csa', 'CSS0001641' => 'camsi', 'CSS0008310' => 'camsi', 'CSS0013011' => 'camsi', 'CSS0017147' => 'camsi', 'CSS0022970' => 'camsi', 'CSS0025655' => 'camsi', 'CSS0028665' => 'camsi', 'CSS0029117' => 'camsi', 'CSS0032024' => 'camsi', 'CSS0039681' => 'camsi', 'CSS0046516' => 'camsi', 'CSS0050307' => 'camsi', 'DCAR_005871' => 'dca', 'DCAR_007342' => 'dca', 'DCAR_024228' => 'dca', 'DCAR_027277' => 'dca', 'DCAR_030718' => 'dca', 'Dinv20287' => 'din', 'Dinv22461' => 'din', 'Dinv22464' => 'din', 'Dinv29912' => 'din', 'Dinv29913' => 'din', 'Dinv34580' => 'din', 'Dinv34582' => 'din', 'Dinv44632' => 'din', 'Duzib052G0266' => 'dzi', 'Duzib133G0907' => 'dzi', 'Duzib133G1034' => 'dzi', 'Duzib138G0207' => 'dzi', 'Duzib138G0491' => 'dzi', 'Duzib151G0812' => 'dzi', 'Duzib151G1166' => 'dzi', 'Duzib168G0192' => 'dzi', 'Duzib211G0077' => 'dzi', 'Duzib212G0429' => 'dzi', 'Duzib212G0472' => 'dzi', 'ECA233G2617' => 'eca', 'ECA236G4188' => 'eca', 'ECA240G0936' => 'eca', 'ECA240G1129' => 'eca', 'ECA247G0623' => 'eca', 'EL10Ac5g10451' => 'bvu', 'EL10Ac5g10453' => 'bvu', 'EL10Ac5g10894' => 'bvu', 'Eucgr.H00192' => 'egr', 'Eucgr.H00193' => 'egr', 'Eucgr.H00194' => 'egr', 'Eucgr.J01562' => 'egr', 'Eucgr.K03301' => 'egr', 'FAN02G0632' => 'fan', 'FAN05G5378' => 'fan', 'FAN09G3247' => 'fan', 'FAN12G0435' => 'fan', 'FAN12G2426' => 'fan', 'FAN14G1707' => 'fan', 'FAN14G4725' => 'fan', 'FAN15G2071' => 'fan', 'FAN17G3065' => 'fan', 'FAN19G1376' => 'fan', 'FAN20G0354' => 'fan', 'FAN20G2429' => 'fan', 'FAN20G2658' => 'fan', 'FAN24G2343' => 'fan', 'FAN27G2362' => 'fan', 'FAN28G1765' => 'fan', 'FvH4_1g16020' => 'fve', 'FvH4_2g04890' => 'fve', 'FvH4_2g22270' => 'fve', 'FvH4_4g02630' => 'fve', 'FvH4_4g02640' => 'fve', 'FvH4_6g02650' => 'fve', 'Glyma.02G140600' => 'gma', 'Glyma.03G159900' => 'gma', 'Glyma.05G234800' => 'gma', 'Glyma.07G269600' => 'gma', 'Glyma.08G042300' => 'gma', 'Glyma.10G033500' => 'gma', 'Glyma.10G185200' => 'gma', 'Glyma.17G004300' => 'gma', 'Glyma.19G161900' => 'gma', 'Glyma.20G205100' => 'gma', 'Glyma.20G205200' => 'gma', 'Gohir.A01G139101' => 'ghi', 'Gohir.A02G035600' => 'ghi', 'Gohir.A02G117901' => 'ghi', 'Gohir.A07G210100' => 'ghi', 'Gohir.A07G210200' => 'ghi', 'Gohir.A08G061100' => 'ghi', 'Gohir.A09G223000' => 'ghi', 'Gohir.A09G223100' => 'ghi', 'Gohir.A10G113900' => 'ghi', 'Gohir.A10G114000' => 'ghi', 'Gohir.D02G042300' => 'ghi', 'Gohir.D07G216100' => 'ghi', 'Gohir.D07G216200' => 'ghi', 'Gohir.D08G070400' => 'ghi', 'Gohir.D09G225000' => 'ghi', 'Gohir.D09G225100' => 'ghi', 'Gohir.D10G152300' => 'ghi', 'Gohir.D10G153200' => 'ghi', 'Gohir.D11G133701' => 'ghi', 'Gorai.004G074100' => 'gra', 'Gorai.005G046800' => 'gra', 'Gorai.006G246500' => 'gra', 'Gorai.006G246600' => 'gra', 'Gorai.007G142900' => 'gra', 'Gorai.011G171000' => 'gra', 'Gorai.011G171100' => 'gra', 'Gorai.013G104300' => 'gra', 'Gorai.013G104400' => 'gra', 'GSVIVG01000754001' => 'vvi', 'GSVIVG01000756001' => 'vvi', 'GSVIVG01010903001' => 'vvi', 'GSVIVG01017623001' => 'vvi', 'GSVIVG01018113001' => 'vvi', 'GSVIVG01018116001' => 'vvi', 'GSVIVG01018118001' => 'vvi', 'HanXRQChr03g0076211' => 'han', 'HanXRQChr03g0092431' => 'han', 'HanXRQChr03g0092441' => 'han', 'HanXRQChr03g0092591' => 'han', 'HanXRQChr03g0092671' => 'han', 'HanXRQChr03g0092681' => 'han', 'HanXRQChr03g0092691' => 'han', 'HanXRQChr03g0092701' => 'han', 'HanXRQChr03g0092721' => 'han', 'HanXRQChr03g0092731' => 'han', 'HanXRQChr04g0113681' => 'han', 'HanXRQChr10g0281371' => 'han', 'HanXRQChr11g0337141' => 'han', 'HanXRQChr13g0424521' => 'han', 'HanXRQChr13g0424531' => 'han', 'HanXRQChr13g0424541' => 'han', 'HanXRQChr16g0498221' => 'han', 'Haze_04377' => 'cav', 'Haze_11298' => 'cav', 'Haze_24547' => 'cav', 'Haze_24550' => 'cav', 'Haze_26587' => 'cav', 'Hma1.2p1_0650F.1_g195410' => 'hma', 'Hma1.2p1_0893F.1_g233470' => 'hma', 'HPP92_006508' => 'vpl', 'HPP92_024780' => 'vpl', 'Hund02688' => 'sun', 'Hund09380' => 'sun', 'Hund09381' => 'sun', 'Hund09832' => 'sun', 'Hund09833' => 'sun', 'Hund11351' => 'sun', 'Hund11513' => 'sun', 'Lalb_Chr06g0162591' => 'lal', 'Lalb_Chr06g0162601' => 'lal', 'Lalb_Chr06g0169321' => 'lal', 'Lalb_Chr09g0330951' => 'lal', 'Lalb_Chr16g0387631' => 'lal', 'Lalb_Chr21g0306241' => 'lal', 'Lalb_Chr25g0290051' => 'lal', 'Lalb_Chr25g0290061' => 'lal', 'Lalb_Chr25g0290071' => 'lal', 'Lj1g0003876' => 'lja', 'Lj1P1207T36' => 'lonja', 'Lj2C1156G12' => 'lonja', 'Lj3A793G39' => 'lonja', 'Lj3C580G2' => 'lonja', 'Lj3C780G2' => 'lonja', 'Lj3C780T4' => 'lonja', 'Lj3C793G9' => 'lonja', 'Lj4g0012960' => 'lja', 'Lj5g0021252' => 'lja', 'Lj5g0021484' => 'lja', 'Lj5g0024528' => 'lja', 'Lj6A399T12' => 'lonja', 'Lj6A656G65' => 'lonja', 'Lsat_1_v5_gn_3_125500' => 'lsa', 'Lsat_1_v5_gn_3_125540' => 'lsa', 'Lsat_1_v5_gn_5_72701' => 'lsa', 'Lsat_1_v5_gn_8_91560' => 'lsa', 'Lsat_1_v5_gn_9_9640' => 'lsa', 'Manes.01G200600' => 'mes', 'Manes.01G200700' => 'mes', 'Manes.03G168900' => 'mes', 'Manes.03G169000' => 'mes', 'Manes.05G085801' => 'mes', 'Manes.05G086200' => 'mes', 'Manes.15G036700' => 'mes', 'Manes.15G036900' => 'mes', 'Mapoly0004s0172' => 'mpo', 'Mapoly0023s0001' => 'mpo', 'Mapoly0142s0012' => 'mpo', 'MBI01_g32854_MAGBIO' => 'mbi', 'MBI11_g24427_MAGBIO' => 'mbi', 'MBI11_g47319_MAGBIO' => 'mbi', 'MCO01G433' => 'mco', 'MD00G1187800' => 'mdo', 'MD04G1226500' => 'mdo', 'MD05G1203900' => 'mdo', 'MD10G1191100' => 'mdo', 'MD12G1243500' => 'mdo', 'MD13G1207000' => 'mdo', 'MD13G1207100' => 'mdo', 'MD16G1208600' => 'mdo', 'Medtr1g050352' => 'mtr', 'Medtr1g070385' => 'mtr', 'Medtr1g070450' => 'mtr', 'Medtr1g075200' => 'mtr', 'Medtr1g075250' => 'mtr', 'Medtr1g075260' => 'mtr', 'Medtr1g475250' => 'mtr', 'Medtr4g075450' => 'mtr', 'Medtr7g096300' => 'mtr', 'Medtr8g105110' => 'mtr', 'MELO3C006470.2' => 'cme', 'MELO3C006471.2' => 'cme', 'MELO3C020772.2' => 'cme', 'MELO3C026780.2' => 'cme', 'MELO3C026781.2' => 'cme', 'Migut.D00390' => 'egut', 'Migut.G00435' => 'egut', 'Migut.G00436' => 'egut', 'Migut.G00718' => 'egut', 'MSTRG.21891' => 'ama', 'MSTRG.26910' => 'ama', 'MSTRG.4099' => 'ama', 'MSTRG.9925' => 'ama', 'Nitab4.5_0000165g0010' => 'nta', 'Nitab4.5_0000209g0180' => 'nta', 'Nitab4.5_0000244g0440' => 'nta', 'Nitab4.5_0000525g0220' => 'nta', 'Nitab4.5_0001597g0020' => 'nta', 'Nitab4.5_0001878g0040' => 'nta', 'Nitab4.5_0001878g0060' => 'nta', 'Nitab4.5_0002838g0100' => 'nta', 'Nitab4.5_0002838g0120' => 'nta', 'Nitab4.5_0004798g0030' => 'nta', 'Nitab4.5_0005420g0010' => 'nta', 'Nitab4.5_0005507g0010' => 'nta', 'Nitab4.5_0005574g0020' => 'nta', 'Nitab4.5_0005838g0010' => 'nta', 'Nitab4.5_0010580g0020' => 'nta', 'Nn1g02599' => 'nnu', 'Nn1g02608' => 'nnu', 'Nn3g17742' => 'nnu', 'Nn3g19534' => 'nnu', 'Nn3g19535' => 'nnu', 'Oeu008790.1' => 'oeu', 'Oeu008792.1' => 'oeu', 'Oeu032590.1' => 'oeu', 'Oeu035349.1' => 'oeu', 'Oeu049791.1' => 'oeu', 'Os01g0774500' => 'osa', 'Os03g0628800' => 'osa', 'Os03g0798600' => 'osa', 'Os05g0508800' => 'osa', 'Peaxi162Scf00036g02018' => 'pax', 'Peaxi162Scf00578g00032' => 'pax', 'Peaxi162Scf00578g00317' => 'pax', 'Peaxi162Scf00785g00114' => 'pax', 'Peaxi162Scf00813g00119' => 'pax', 'Peaxi162Scf00906g00227' => 'pax', 'PGR004G0875' => 'pgr', 'PGR004G2424' => 'pgr', 'PGR031G1239' => 'pgr', 'PGR031G2474' => 'pgr', 'PGR044G0423' => 'pgr', 'PGSC0003DMG400001128' => 'stu', 'PGSC0003DMG400007336' => 'stu', 'PGSC0003DMG400016318' => 'stu', 'PGSC0003DMG400016319' => 'stu', 'PGSC0003DMG400018074' => 'stu', 'Phvul.001G157700' => 'pvu', 'Phvul.002G148550' => 'pvu', 'Phvul.002G320200' => 'pvu', 'Phvul.003G089200' => 'pvu', 'Phvul.007G126000' => 'pvu', 'Phvul.007G126100' => 'pvu', 'Phvul.007G178000' => 'pvu', 'Phvul.007G178200' => 'pvu', 'Potri.002G043000' => 'ptr', 'Potri.002G043200' => 'ptr', 'Potri.003G123750' => 'ptr', 'Potri.005G055401' => 'ptr', 'Potri.005G219700' => 'ptr', 'Potri.005G220000' => 'ptr', 'Potri.008G161901' => 'ptr', 'Potri.008G162000' => 'ptr', 'Potri.008G162400' => 'ptr', 'Potri.010G076900' => 'ptr', 'Pp3c12_9180' => 'ppa', 'Pp3c13_19770' => 'ppa', 'Pp3c14_22950' => 'ppa', 'Pp3c16_12160' => 'ppa', 'Pp3c27_7820' => 'ppa', 'Pp3c2_3490' => 'ppa', 'Pp3c3_23700' => 'ppa', 'Pp3c3_36520' => 'ppa', 'Pp3c4_15250' => 'ppa', 'PRCOL_00007002' => 'pco', 'Prupe.1G030600' => 'ppe', 'Prupe.1G030700' => 'ppe', 'Prupe.6G345200' => 'ppe', 'Prupe.8G230300' => 'ppe', 'Prupe.8G230500' => 'ppe', 'Psat3g059600' => 'psa', 'Psat5g200920' => 'psa', 'Psat6g056440' => 'psa', 'Psat6g057360' => 'psa', 'Psat6g134120' => 'psa', 'Psat6g134160' => 'psa', 'Psat7g008640' => 'psa', 'Psat7g185240' => 'psa', 'PSO017G1330' => 'pso', 'PSO063G6097' => 'pso', 'PSO170G0835' => 'pso', 'PSO170G2499' => 'pso', 'PSO210G5058' => 'pso', 'PSO210G6154' => 'pso', 'PSO585G0031' => 'pso', 'PSO832G0264' => 'pso', 'PSO832G4288' => 'pso', 'QL03p027355' => 'qlo', 'QL03p027430' => 'qlo', 'QL04p081380' => 'qlo', 'QL06p015642' => 'qlo', 'QL06p015650' => 'qlo', 'QL06p015686' => 'qlo', 'QL12p042927' => 'qlo', 'QL93p1863_0035' => 'qlo', 'RcHm_v2.0_Chr3g0450581' => 'rch', 'RcHm_v2.0_Chr4g0390371' => 'rch', 'RcHm_v2.0_Chr4g0390381' => 'rch', 'RcHm_v2.0_Chr4g0390491' => 'rch', 'RcHm_v2.0_Chr4g0390501' => 'rch', 'RcHm_v2.0_Chr6g0289231' => 'rch', 'Rhsim04G0190400' => 'rsi', 'Rhsim04G0190500' => 'rsi', 'Rhsim04G0190600' => 'rsi', 'Rhsim13G0031400' => 'rsi', 'Rhsim13G0165600' => 'rsi', 'RhsimUnG0114600' => 'rsi', 'RhsimUnG0114700' => 'rsi', 'Sabra02G0034800' => 'sbr', 'Sabra02G0035100' => 'sbr', 'Sabra05G0168600' => 'sbr', 'Sabra05G0168800' => 'sbr', 'Sabra08G0123700' => 'sbr', 'Sabra10G0031900' => 'sbr', 'Sabra13G0039000' => 'sbr', 'SalBow2G0782' => 'sbo', 'SalBow2G1403' => 'sbo', 'SalBow4G0074' => 'sbo', 'SalBow4G2635' => 'sbo', 'SalBow5G3010' => 'sbo', 'Sc05g0000870' => 'sci', 'Sc05g0000890' => 'sci', 'Sc13g0005000' => 'sci', 'Sc13g0005030' => 'sci', 'Sc19g0003790' => 'sci', 'Sc19g0003800' => 'sci', 'Sed0003467' => 'sed', 'Sed0009355' => 'sed', 'Sed0009894' => 'sed', 'Sed0011972' => 'sed', 'Sed0021483' => 'sed', 'Sed0021750' => 'sed', 'Sed0026279' => 'sed', 'SEGI_05312' => 'sgi', 'SEGI_10112' => 'sgi', 'SEGI_15835' => 'sgi', 'SEGI_30386' => 'sgi', 'SEGI_34122' => 'sgi', 'SEGI_35063' => 'sgi', 'SGA_v2.0_scaffold101G29794' => 'sas', 'SGA_v2.0_scaffold1G00573' => 'sas', 'SGA_v2.0_scaffold79G25637' => 'sas', 'SGA_v2.0_scaffold88G27283' => 'sas', 'SGA_v2.0_scaffold88G27285' => 'sas', 'SGA_v2.0_scaffold88G27331' => 'sas', 'SHI09937' => 'shi', 'SMO119G0302' => 'smo', 'SMO137G0231' => 'smo', 'SMO367G1151' => 'smo', 'Solyc02g082000.3' => 'sly', 'Solyc06g031670.3' => 'sly', 'Solyc06g053810.3' => 'sly', 'Solyc07g025457.1' => 'sly', 'Solyc08g059740.1' => 'sly', 'Solyc08g059750.3' => 'sly', 'Solyc09g083370.3' => 'sly', 'Solyc12g038950.3' => 'sly', 'Sopen02g026630' => 'spe', 'Sopen06g018930' => 'spe', 'Sopen06g018940' => 'spe', 'Sopen08g009460' => 'spe', 'Sopen09g032290' => 'spe', 'Sp1g03080' => 'spa', 'Sp1g03090' => 'spa', 'Sp1g05480' => 'spa', 'Sp2g07860' => 'spa', 'Sp2g08430' => 'spa', 'Sp2g08440' => 'spa', 'Sp2g26200' => 'spa', 'Sp4g13170' => 'spa', 'Sp6g33840' => 'spa', 'SpUn1204_0010' => 'spa', 'TAR365G0908' => 'tar', 'TAR381G1270' => 'tar', 'TAR381G1651' => 'tar', 'TAR625G1131' => 'tar', 'TAR633G0962' => 'tar', 'TAR633G1729' => 'tar', 'TAR633G1864' => 'tar', 'TAR636G0221' => 'tar', 'TAR636G0314' => 'tar', 'TAR636G3202' => 'tar', 'THA.LOC104800805' => 'tha', 'THA.LOC104801096' => 'tha', 'THA.LOC104801555' => 'tha', 'THA.LOC104808491' => 'tha', 'THA.LOC104808595' => 'tha', 'THA.LOC104815985' => 'tha', 'THA.LOC104822250' => 'tha', 'THA.LOC104826071' => 'tha', 'Thecc.01G265200' => 'tca', 'Thecc.01G265300' => 'tca', 'Thecc.01G265700' => 'tca', 'Thecc.03G109100' => 'tca', 'Thecc.04G245900' => 'tca', 'Thecc.04G246000' => 'tca', 'Thhalv10003334m.g' => 'esa', 'Thhalv10005508m.g' => 'esa', 'Thhalv10005643m.g' => 'esa', 'Thhalv10007316m.g' => 'esa', 'Thhalv10009006m.g' => 'esa', 'Thhalv10009309m.g' => 'esa', 'Thhalv10014917m.g' => 'esa', 'Thhalv10014919m.g' => 'esa', 'Thhalv10015393m.g' => 'esa', 'Thhalv10016515m.g' => 'esa', 'Thhalv10029242m.g' => 'esa', 'TPR.G16654' => 'tpr', 'TPR.G20589' => 'tpr', 'TPR.G23029' => 'tpr', 'TPR.G27731' => 'tpr', 'TPR.G28889' => 'tpr', 'TPR.G28899' => 'tpr', 'TPR.G30846' => 'tpr', 'TPR.G5452' => 'tpr', 'TPR.G5713' => 'tpr', 'TPR.G9046' => 'tpr', 'TPR.G9061' => 'tpr', 'TWI09G1075' => 'twi', 'TWI12G0806' => 'twi', 'TWI18G0108' => 'twi', 'TWI53G1361' => 'twi', 'TWI73G0185' => 'twi', 'TWI73G0427' => 'twi', 'unitig_37.g12001' => 'ugi', 'unitig_747.g21660' => 'ugi', 'unitig_748.g7232' => 'ugi', 'unitig_748.g7315' => 'ugi', 'unitig_85.g27262' => 'ugi', 'unitig_92.g28220' => 'ugi', 'vmacro02632' => 'vma', 'vmacro08410' => 'vma', 'vmacro08411' => 'vma', 'vmacro15407' => 'vma', 'VMungo0251G3619' => 'vmu', 'VMungo0720G1204' => 'vmu', 'VMungo0720G1918' => 'vmu', 'VMungo0720G2387' => 'vmu', 'VMungo0720G2961' => 'vmu', 'VMungo1215G2154' => 'vmu', 'VMungo1383G2411' => 'vmu', 'Zm00001eb051130' => 'zma', 'Zm00001eb116830' => 'zma', 'Zm00001eb116850' => 'zma', 'Zm00001eb151740' => 'zma', 'Zm00001eb292360' => 'zma', 'Zm00001eb301640' => 'zma' ), 'gf_id' => 'HOM05D000856', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000856' ), 'data_identifier' => 'HOM05D000856', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000856', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p00010' => 'bna', 'A03p04160' => 'bna', 'A03p17160' => 'bna', 'A04p23370' => 'bna', 'A05p14860' => 'bna', 'A08p37020' => 'bna', 'A09p08050' => 'bna', 'A09p66800' => 'bna', 'A09p67940' => 'bna', 'A10p02680' => 'bna', 'A10p05320' => 'bna', 'Aa31LG1G20560' => 'aar', 'Aa31LG1G20610' => 'aar', 'Aa31LG1G7810' => 'aar', 'Aa31LG5G3590' => 'aar', 'Aa31LG5G6140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3819' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4683' => 'aag', 'Actinidia04480' => 'ach', 'Actinidia05466' => 'ach', 'Actinidia08445' => 'ach', 'Actinidia21170' => 'ach', 'Actinidia24812' => 'ach', 'Actinidia24951' => 'ach', 'Actinidia40088' => 'ach', 'Ah.02g111660' => 'amhyb', 'Ah.11g048900' => 'amhyb', 'Ah.11g049910' => 'amhyb', 'AL1G13870' => 'aly', 'AL1G13880' => 'aly', 'AL1G16760' => 'aly', 'AL390U10020' => 'aly', 'AL4G25520' => 'aly', 'AL6G19890' => 'aly', 'AL6G19900' => 'aly', 'AL6G19910' => 'aly', 'AL8G40100' => 'aly', 'Aqoxy2G03562' => 'aox', 'Aqoxy5G00316' => 'aox', 'Aqoxy5G00926' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1628KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1H403S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2FU6SJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.882I6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8YRY2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YN1SN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AF70II' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZA8L1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F916KL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHRD8H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KTZ8QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S22EMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8M29T' => 'arhy', 'AT1G04270' => 'ath', 'AT1G04280' => 'ath', 'AT1G06750' => 'ath', 'AT1G33850' => 'ath', 'AT2G30630' => 'ath', 'AT5G09490' => 'ath', 'AT5G09500' => 'ath', 'AT5G09510' => 'ath', 'AT5G43640' => 'ath', 'AT5G63070' => 'ath', 'ATR0605G315' => 'atr', 'Atru.chr11.175' => 'acertr', 'Atru.chr11.653' => 'acertr', 'Atru.chr3.1616' => 'acertr', 'Atru.chr4.2230' => 'acertr', 'Atru.chr4.2232' => 'acertr', 'Atru.chr5.1598' => 'acertr', 'Atru.chr5.1600' => 'acertr', 'Atru.chr5.2188' => 'acertr', 'AUR62008326' => 'cqu', 'AUR62011922' => 'cqu', 'AUR62011924' => 'cqu', 'AUR62021771' => 'cqu', 'AUR62032237' => 'cqu', 'AUR62032240' => 'cqu', 'BcaB01g05572' => 'bca', 'BcaB02g10337' => 'bca', 'BcaB04g19944' => 'bca', 'BcaB05g21548' => 'bca', 'BcaB05g21549' => 'bca', 'BcaB05g23227' => 'bca', 'BcaB06g26256' => 'bca', 'BcaB06g26257' => 'bca', 'BcaB06g28379' => 'bca', 'BcaC02g11159' => 'bca', 'BcaC03g13258' => 'bca', 'BcaC03g13259' => 'bca', 'BcaC05g24456' => 'bca', 'BcaC05g24457' => 'bca', 'BcaC07g36922' => 'bca', 'BcaC07g36923' => 'bca', 'BcaC07g42050' => 'bca', 'BcaC07g42176' => 'bca', 'BcaC07g42195' => 'bca', 'BcaC07g42196' => 'bca', 'BcaNung06674' => 'bca', 'BolC2t06351H' => 'bol', 'BolC2t06352H' => 'bol', 'BolC3t12993H' => 'bol', 'BolC4t23525H' => 'bol', 'BolC4t27475H' => 'bol', 'BolC5t29025H' => 'bol', 'BolC5t29026H' => 'bol', 'BolC8t46898H' => 'bol', 'BolC8t46899H' => 'bol', 'BolC8t52630H' => 'bol', 'BolC8t52765H' => 'bol', 'BolC9t53824H' => 'bol', 'BraA03t09760Z' => 'bra', 'BraA03t10990Z' => 'bra', 'BraA05t20413Z' => 'bra', 'BraA08t35602Z' => 'bra', 'BraA09t36458Z' => 'bra', 'BraA09t42018Z' => 'bra', 'BraA09t42129Z' => 'bra', 'BraA10t42536Z' => 'bra', 'BraA10t42537Z' => 'bra', 'C01p10690' => 'bna', 'C02p03890' => 'bna', 'C02p03900' => 'bna', 'C03p04620' => 'bna', 'C04p19870' => 'bna', 'C04p59670' => 'bna', 'C05p02460' => 'bna', 'C05p02470' => 'bna', 'C08p00980' => 'bna', 'C08p00990' => 'bna', 'C08p51030' => 'bna', 'C08p52360' => 'bna', 'C09p09120' => 'bna', 'CAN.G19.15' => 'can', 'CAN.G251.10' => 'can', 'CAN.G251.9' => 'can', 'CAN.G398.24' => 'can', 'CAN.G410.32' => 'can', 'CAN.G881.2' => 'can', 'CANSAT01G3025' => 'cansat', 'CANSAT78G1211' => 'cansat', 'CANSAT78G1218' => 'cansat', 'CANSAT78G1521' => 'cansat', 'CANSAT78G1670' => 'cansat', 'CARHR003600' => 'chi', 'CARHR003610' => 'chi', 'CARHR006290' => 'chi', 'CARHR006430' => 'chi', 'CARHR124110' => 'chi', 'CARHR203870' => 'chi', 'CARHR203880' => 'chi', 'CARHR203890' => 'chi', 'CARHR276880' => 'chi', 'Carub.0001s0346' => 'cru', 'Carub.0001s0347' => 'cru', 'Carub.0001s0607' => 'cru', 'Carub.0003s2768' => 'cru', 'Carub.0003s2769' => 'cru', 'Carub.0004s1178' => 'cru', 'Carub.0006s0806' => 'cru', 'Carub.0006s0807' => 'cru', 'Carub.0006s0808' => 'cru', 'Carub.0008s0501' => 'cru', 'Carub.0008s2379' => 'cru', 'Ca_08655_v3' => 'car', 'Ca_08922_v3' => 'car', 'Ca_08923_v3' => 'car', 'Ca_09119_v3' => 'car', 'Ca_09703_v3' => 'car', 'Ca_09705_v3' => 'car', 'Ca_09835_v3' => 'car', 'Ca_26403_v3' => 'car', 'Ca_30719_v3' => 'car', 'CBR_g17958' => 'cbr', 'CBR_g40516' => 'cbr', 'Cc00_g05350' => 'ccan', 'Cc01_g18690' => 'ccan', 'Cc03_g04830' => 'ccan', 'Cc03_g04850' => 'ccan', 'CDE02G4469' => 'cde', 'CDE06G0883' => 'cde', 'CDE06G1295' => 'cde', 'CDE06G1390' => 'cde', 'CDE07G0584' => 'cde', 'CDE07G1084' => 'cde', 'CDE08G1259' => 'cde', 'Cfa002341' => 'cfa', 'Cfa024337' => 'cfa', 'Ciclev10004749m.g' => 'ccl', 'Ciclev10006127m.g' => 'ccl', 'Ciclev10019720m.g' => 'ccl', 'Ciclev10022652m.g' => 'ccl', 'CiPaw.01G190400' => 'cil', 'CiPaw.01G190500' => 'cil', 'CiPaw.02G116400' => 'cil', 'CiPaw.02G116500' => 'cil', 'CiPaw.04G183000' => 'cil', 'CiPaw.04G183300' => 'cil', 'ClCG05G004610' => 'cla', 'ClCG05G004620' => 'cla', 'ClCG06G006730' => 'cla', 'ClCG06G006740' => 'cla', 'ClCG11G003690' => 'cla', 'COL.COLO4_08276' => 'col', 'COL.COLO4_08277' => 'col', 'COL.COLO4_15787' => 'col', 'COL.COLO4_15789' => 'col', 'Cpa.g.c44815' => 'cpa', 'Cpa.g.sc52.144' => 'cpa', 'Cpa.g.sc58.46' => 'cpa', 'Cpa.g.sc58.47' => 'cpa', 'Cre08.g360900' => 'cre', 'CsaV3_2G013030' => 'csa', 'CsaV3_2G013050' => 'csa', 'CsaV3_2G015620' => 'csa', 'CsaV3_3G012590' => 'csa', 'CsaV3_3G012600' => 'csa', 'CSS0001641' => 'camsi', 'CSS0008310' => 'camsi', 'CSS0013011' => 'camsi', 'CSS0017147' => 'camsi', 'CSS0022970' => 'camsi', 'CSS0025655' => 'camsi', 'CSS0028665' => 'camsi', 'CSS0029117' => 'camsi', 'CSS0032024' => 'camsi', 'CSS0039681' => 'camsi', 'CSS0046516' => 'camsi', 'CSS0050307' => 'camsi', 'DCAR_005871' => 'dca', 'DCAR_007342' => 'dca', 'DCAR_024228' => 'dca', 'DCAR_027277' => 'dca', 'DCAR_030718' => 'dca', 'Dinv20287' => 'din', 'Dinv22461' => 'din', 'Dinv22464' => 'din', 'Dinv29912' => 'din', 'Dinv29913' => 'din', 'Dinv34580' => 'din', 'Dinv34582' => 'din', 'Dinv44632' => 'din', 'Duzib052G0266' => 'dzi', 'Duzib133G0907' => 'dzi', 'Duzib133G1034' => 'dzi', 'Duzib138G0207' => 'dzi', 'Duzib138G0491' => 'dzi', 'Duzib151G0812' => 'dzi', 'Duzib151G1166' => 'dzi', 'Duzib168G0192' => 'dzi', 'Duzib211G0077' => 'dzi', 'Duzib212G0429' => 'dzi', 'Duzib212G0472' => 'dzi', 'ECA233G2617' => 'eca', 'ECA236G4188' => 'eca', 'ECA240G0936' => 'eca', 'ECA240G1129' => 'eca', 'ECA247G0623' => 'eca', 'EL10Ac5g10451' => 'bvu', 'EL10Ac5g10453' => 'bvu', 'EL10Ac5g10894' => 'bvu', 'Eucgr.H00192' => 'egr', 'Eucgr.H00193' => 'egr', 'Eucgr.H00194' => 'egr', 'Eucgr.J01562' => 'egr', 'Eucgr.K03301' => 'egr', 'FAN02G0632' => 'fan', 'FAN05G5378' => 'fan', 'FAN09G3247' => 'fan', 'FAN12G0435' => 'fan', 'FAN12G2426' => 'fan', 'FAN14G1707' => 'fan', 'FAN14G4725' => 'fan', 'FAN15G2071' => 'fan', 'FAN17G3065' => 'fan', 'FAN19G1376' => 'fan', 'FAN20G0354' => 'fan', 'FAN20G2429' => 'fan', 'FAN20G2658' => 'fan', 'FAN24G2343' => 'fan', 'FAN27G2362' => 'fan', 'FAN28G1765' => 'fan', 'FvH4_1g16020' => 'fve', 'FvH4_2g04890' => 'fve', 'FvH4_2g22270' => 'fve', 'FvH4_4g02630' => 'fve', 'FvH4_4g02640' => 'fve', 'FvH4_6g02650' => 'fve', 'Glyma.02G140600' => 'gma', 'Glyma.03G159900' => 'gma', 'Glyma.05G234800' => 'gma', 'Glyma.07G269600' => 'gma', 'Glyma.08G042300' => 'gma', 'Glyma.10G033500' => 'gma', 'Glyma.10G185200' => 'gma', 'Glyma.17G004300' => 'gma', 'Glyma.19G161900' => 'gma', 'Glyma.20G205100' => 'gma', 'Glyma.20G205200' => 'gma', 'Gohir.A01G139101' => 'ghi', 'Gohir.A02G035600' => 'ghi', 'Gohir.A02G117901' => 'ghi', 'Gohir.A07G210100' => 'ghi', 'Gohir.A07G210200' => 'ghi', 'Gohir.A08G061100' => 'ghi', 'Gohir.A09G223000' => 'ghi', 'Gohir.A09G223100' => 'ghi', 'Gohir.A10G113900' => 'ghi', 'Gohir.A10G114000' => 'ghi', 'Gohir.D02G042300' => 'ghi', 'Gohir.D07G216100' => 'ghi', 'Gohir.D07G216200' => 'ghi', 'Gohir.D08G070400' => 'ghi', 'Gohir.D09G225000' => 'ghi', 'Gohir.D09G225100' => 'ghi', 'Gohir.D10G152300' => 'ghi', 'Gohir.D10G153200' => 'ghi', 'Gohir.D11G133701' => 'ghi', 'Gorai.004G074100' => 'gra', 'Gorai.005G046800' => 'gra', 'Gorai.006G246500' => 'gra', 'Gorai.006G246600' => 'gra', 'Gorai.007G142900' => 'gra', 'Gorai.011G171000' => 'gra', 'Gorai.011G171100' => 'gra', 'Gorai.013G104300' => 'gra', 'Gorai.013G104400' => 'gra', 'GSVIVG01000754001' => 'vvi', 'GSVIVG01000756001' => 'vvi', 'GSVIVG01010903001' => 'vvi', 'GSVIVG01017623001' => 'vvi', 'GSVIVG01018113001' => 'vvi', 'GSVIVG01018116001' => 'vvi', 'GSVIVG01018118001' => 'vvi', 'HanXRQChr03g0076211' => 'han', 'HanXRQChr03g0092431' => 'han', 'HanXRQChr03g0092441' => 'han', 'HanXRQChr03g0092591' => 'han', 'HanXRQChr03g0092671' => 'han', 'HanXRQChr03g0092681' => 'han', 'HanXRQChr03g0092691' => 'han', 'HanXRQChr03g0092701' => 'han', 'HanXRQChr03g0092721' => 'han', 'HanXRQChr03g0092731' => 'han', 'HanXRQChr04g0113681' => 'han', 'HanXRQChr10g0281371' => 'han', 'HanXRQChr11g0337141' => 'han', 'HanXRQChr13g0424521' => 'han', 'HanXRQChr13g0424531' => 'han', 'HanXRQChr13g0424541' => 'han', 'HanXRQChr16g0498221' => 'han', 'Haze_04377' => 'cav', 'Haze_11298' => 'cav', 'Haze_24547' => 'cav', 'Haze_24550' => 'cav', 'Haze_26587' => 'cav', 'Hma1.2p1_0650F.1_g195410' => 'hma', 'Hma1.2p1_0893F.1_g233470' => 'hma', 'HPP92_006508' => 'vpl', 'HPP92_024780' => 'vpl', 'Hund02688' => 'sun', 'Hund09380' => 'sun', 'Hund09381' => 'sun', 'Hund09832' => 'sun', 'Hund09833' => 'sun', 'Hund11351' => 'sun', 'Hund11513' => 'sun', 'Lalb_Chr06g0162591' => 'lal', 'Lalb_Chr06g0162601' => 'lal', 'Lalb_Chr06g0169321' => 'lal', 'Lalb_Chr09g0330951' => 'lal', 'Lalb_Chr16g0387631' => 'lal', 'Lalb_Chr21g0306241' => 'lal', 'Lalb_Chr25g0290051' => 'lal', 'Lalb_Chr25g0290061' => 'lal', 'Lalb_Chr25g0290071' => 'lal', 'Lj1g0003876' => 'lja', 'Lj1P1207T36' => 'lonja', 'Lj2C1156G12' => 'lonja', 'Lj3A793G39' => 'lonja', 'Lj3C580G2' => 'lonja', 'Lj3C780G2' => 'lonja', 'Lj3C780T4' => 'lonja', 'Lj3C793G9' => 'lonja', 'Lj4g0012960' => 'lja', 'Lj5g0021252' => 'lja', 'Lj5g0021484' => 'lja', 'Lj5g0024528' => 'lja', 'Lj6A399T12' => 'lonja', 'Lj6A656G65' => 'lonja', 'Lsat_1_v5_gn_3_125500' => 'lsa', 'Lsat_1_v5_gn_3_125540' => 'lsa', 'Lsat_1_v5_gn_5_72701' => 'lsa', 'Lsat_1_v5_gn_8_91560' => 'lsa', 'Lsat_1_v5_gn_9_9640' => 'lsa', 'Manes.01G200600' => 'mes', 'Manes.01G200700' => 'mes', 'Manes.03G168900' => 'mes', 'Manes.03G169000' => 'mes', 'Manes.05G085801' => 'mes', 'Manes.05G086200' => 'mes', 'Manes.15G036700' => 'mes', 'Manes.15G036900' => 'mes', 'Mapoly0004s0172' => 'mpo', 'Mapoly0023s0001' => 'mpo', 'Mapoly0142s0012' => 'mpo', 'MBI01_g32854_MAGBIO' => 'mbi', 'MBI11_g24427_MAGBIO' => 'mbi', 'MBI11_g47319_MAGBIO' => 'mbi', 'MCO01G433' => 'mco', 'MD00G1187800' => 'mdo', 'MD04G1226500' => 'mdo', 'MD05G1203900' => 'mdo', 'MD10G1191100' => 'mdo', 'MD12G1243500' => 'mdo', 'MD13G1207000' => 'mdo', 'MD13G1207100' => 'mdo', 'MD16G1208600' => 'mdo', 'Medtr1g050352' => 'mtr', 'Medtr1g070385' => 'mtr', 'Medtr1g070450' => 'mtr', 'Medtr1g075200' => 'mtr', 'Medtr1g075250' => 'mtr', 'Medtr1g075260' => 'mtr', 'Medtr1g475250' => 'mtr', 'Medtr4g075450' => 'mtr', 'Medtr7g096300' => 'mtr', 'Medtr8g105110' => 'mtr', 'MELO3C006470.2' => 'cme', 'MELO3C006471.2' => 'cme', 'MELO3C020772.2' => 'cme', 'MELO3C026780.2' => 'cme', 'MELO3C026781.2' => 'cme', 'Migut.D00390' => 'egut', 'Migut.G00435' => 'egut', 'Migut.G00436' => 'egut', 'Migut.G00718' => 'egut', 'MSTRG.21891' => 'ama', 'MSTRG.26910' => 'ama', 'MSTRG.4099' => 'ama', 'MSTRG.9925' => 'ama', 'Nitab4.5_0000165g0010' => 'nta', 'Nitab4.5_0000209g0180' => 'nta', 'Nitab4.5_0000244g0440' => 'nta', 'Nitab4.5_0000525g0220' => 'nta', 'Nitab4.5_0001597g0020' => 'nta', 'Nitab4.5_0001878g0040' => 'nta', 'Nitab4.5_0001878g0060' => 'nta', 'Nitab4.5_0002838g0100' => 'nta', 'Nitab4.5_0002838g0120' => 'nta', 'Nitab4.5_0004798g0030' => 'nta', 'Nitab4.5_0005420g0010' => 'nta', 'Nitab4.5_0005507g0010' => 'nta', 'Nitab4.5_0005574g0020' => 'nta', 'Nitab4.5_0005838g0010' => 'nta', 'Nitab4.5_0010580g0020' => 'nta', 'Nn1g02599' => 'nnu', 'Nn1g02608' => 'nnu', 'Nn3g17742' => 'nnu', 'Nn3g19534' => 'nnu', 'Nn3g19535' => 'nnu', 'Oeu008790.1' => 'oeu', 'Oeu008792.1' => 'oeu', 'Oeu032590.1' => 'oeu', 'Oeu035349.1' => 'oeu', 'Oeu049791.1' => 'oeu', 'Os01g0774500' => 'osa', 'Os03g0628800' => 'osa', 'Os03g0798600' => 'osa', 'Os05g0508800' => 'osa', 'Peaxi162Scf00036g02018' => 'pax', 'Peaxi162Scf00578g00032' => 'pax', 'Peaxi162Scf00578g00317' => 'pax', 'Peaxi162Scf00785g00114' => 'pax', 'Peaxi162Scf00813g00119' => 'pax', 'Peaxi162Scf00906g00227' => 'pax', 'PGR004G0875' => 'pgr', 'PGR004G2424' => 'pgr', 'PGR031G1239' => 'pgr', 'PGR031G2474' => 'pgr', 'PGR044G0423' => 'pgr', 'PGSC0003DMG400001128' => 'stu', 'PGSC0003DMG400007336' => 'stu', 'PGSC0003DMG400016318' => 'stu', 'PGSC0003DMG400016319' => 'stu', 'PGSC0003DMG400018074' => 'stu', 'Phvul.001G157700' => 'pvu', 'Phvul.002G148550' => 'pvu', 'Phvul.002G320200' => 'pvu', 'Phvul.003G089200' => 'pvu', 'Phvul.007G126000' => 'pvu', 'Phvul.007G126100' => 'pvu', 'Phvul.007G178000' => 'pvu', 'Phvul.007G178200' => 'pvu', 'Potri.002G043000' => 'ptr', 'Potri.002G043200' => 'ptr', 'Potri.003G123750' => 'ptr', 'Potri.005G055401' => 'ptr', 'Potri.005G219700' => 'ptr', 'Potri.005G220000' => 'ptr', 'Potri.008G161901' => 'ptr', 'Potri.008G162000' => 'ptr', 'Potri.008G162400' => 'ptr', 'Potri.010G076900' => 'ptr', 'Pp3c12_9180' => 'ppa', 'Pp3c13_19770' => 'ppa', 'Pp3c14_22950' => 'ppa', 'Pp3c16_12160' => 'ppa', 'Pp3c27_7820' => 'ppa', 'Pp3c2_3490' => 'ppa', 'Pp3c3_23700' => 'ppa', 'Pp3c3_36520' => 'ppa', 'Pp3c4_15250' => 'ppa', 'PRCOL_00007002' => 'pco', 'Prupe.1G030600' => 'ppe', 'Prupe.1G030700' => 'ppe', 'Prupe.6G345200' => 'ppe', 'Prupe.8G230300' => 'ppe', 'Prupe.8G230500' => 'ppe', 'Psat3g059600' => 'psa', 'Psat5g200920' => 'psa', 'Psat6g056440' => 'psa', 'Psat6g057360' => 'psa', 'Psat6g134120' => 'psa', 'Psat6g134160' => 'psa', 'Psat7g008640' => 'psa', 'Psat7g185240' => 'psa', 'PSO017G1330' => 'pso', 'PSO063G6097' => 'pso', 'PSO170G0835' => 'pso', 'PSO170G2499' => 'pso', 'PSO210G5058' => 'pso', 'PSO210G6154' => 'pso', 'PSO585G0031' => 'pso', 'PSO832G0264' => 'pso', 'PSO832G4288' => 'pso', 'QL03p027355' => 'qlo', 'QL03p027430' => 'qlo', 'QL04p081380' => 'qlo', 'QL06p015642' => 'qlo', 'QL06p015650' => 'qlo', 'QL06p015686' => 'qlo', 'QL12p042927' => 'qlo', 'QL93p1863_0035' => 'qlo', 'RcHm_v2.0_Chr3g0450581' => 'rch', 'RcHm_v2.0_Chr4g0390371' => 'rch', 'RcHm_v2.0_Chr4g0390381' => 'rch', 'RcHm_v2.0_Chr4g0390491' => 'rch', 'RcHm_v2.0_Chr4g0390501' => 'rch', 'RcHm_v2.0_Chr6g0289231' => 'rch', 'Rhsim04G0190400' => 'rsi', 'Rhsim04G0190500' => 'rsi', 'Rhsim04G0190600' => 'rsi', 'Rhsim13G0031400' => 'rsi', 'Rhsim13G0165600' => 'rsi', 'RhsimUnG0114600' => 'rsi', 'RhsimUnG0114700' => 'rsi', 'Sabra02G0034800' => 'sbr', 'Sabra02G0035100' => 'sbr', 'Sabra05G0168600' => 'sbr', 'Sabra05G0168800' => 'sbr', 'Sabra08G0123700' => 'sbr', 'Sabra10G0031900' => 'sbr', 'Sabra13G0039000' => 'sbr', 'SalBow2G0782' => 'sbo', 'SalBow2G1403' => 'sbo', 'SalBow4G0074' => 'sbo', 'SalBow4G2635' => 'sbo', 'SalBow5G3010' => 'sbo', 'Sc05g0000870' => 'sci', 'Sc05g0000890' => 'sci', 'Sc13g0005000' => 'sci', 'Sc13g0005030' => 'sci', 'Sc19g0003790' => 'sci', 'Sc19g0003800' => 'sci', 'Sed0003467' => 'sed', 'Sed0009355' => 'sed', 'Sed0009894' => 'sed', 'Sed0011972' => 'sed', 'Sed0021483' => 'sed', 'Sed0021750' => 'sed', 'Sed0026279' => 'sed', 'SEGI_05312' => 'sgi', 'SEGI_10112' => 'sgi', 'SEGI_15835' => 'sgi', 'SEGI_30386' => 'sgi', 'SEGI_34122' => 'sgi', 'SEGI_35063' => 'sgi', 'SGA_v2.0_scaffold101G29794' => 'sas', 'SGA_v2.0_scaffold1G00573' => 'sas', 'SGA_v2.0_scaffold79G25637' => 'sas', 'SGA_v2.0_scaffold88G27283' => 'sas', 'SGA_v2.0_scaffold88G27285' => 'sas', 'SGA_v2.0_scaffold88G27331' => 'sas', 'SHI09937' => 'shi', 'SMO119G0302' => 'smo', 'SMO137G0231' => 'smo', 'SMO367G1151' => 'smo', 'Solyc02g082000.3' => 'sly', 'Solyc06g031670.3' => 'sly', 'Solyc06g053810.3' => 'sly', 'Solyc07g025457.1' => 'sly', 'Solyc08g059740.1' => 'sly', 'Solyc08g059750.3' => 'sly', 'Solyc09g083370.3' => 'sly', 'Solyc12g038950.3' => 'sly', 'Sopen02g026630' => 'spe', 'Sopen06g018930' => 'spe', 'Sopen06g018940' => 'spe', 'Sopen08g009460' => 'spe', 'Sopen09g032290' => 'spe', 'Sp1g03080' => 'spa', 'Sp1g03090' => 'spa', 'Sp1g05480' => 'spa', 'Sp2g07860' => 'spa', 'Sp2g08430' => 'spa', 'Sp2g08440' => 'spa', 'Sp2g26200' => 'spa', 'Sp4g13170' => 'spa', 'Sp6g33840' => 'spa', 'SpUn1204_0010' => 'spa', 'TAR365G0908' => 'tar', 'TAR381G1270' => 'tar', 'TAR381G1651' => 'tar', 'TAR625G1131' => 'tar', 'TAR633G0962' => 'tar', 'TAR633G1729' => 'tar', 'TAR633G1864' => 'tar', 'TAR636G0221' => 'tar', 'TAR636G0314' => 'tar', 'TAR636G3202' => 'tar', 'THA.LOC104800805' => 'tha', 'THA.LOC104801096' => 'tha', 'THA.LOC104801555' => 'tha', 'THA.LOC104808491' => 'tha', 'THA.LOC104808595' => 'tha', 'THA.LOC104815985' => 'tha', 'THA.LOC104822250' => 'tha', 'THA.LOC104826071' => 'tha', 'Thecc.01G265200' => 'tca', 'Thecc.01G265300' => 'tca', 'Thecc.01G265700' => 'tca', 'Thecc.03G109100' => 'tca', 'Thecc.04G245900' => 'tca', 'Thecc.04G246000' => 'tca', 'Thhalv10003334m.g' => 'esa', 'Thhalv10005508m.g' => 'esa', 'Thhalv10005643m.g' => 'esa', 'Thhalv10007316m.g' => 'esa', 'Thhalv10009006m.g' => 'esa', 'Thhalv10009309m.g' => 'esa', 'Thhalv10014917m.g' => 'esa', 'Thhalv10014919m.g' => 'esa', 'Thhalv10015393m.g' => 'esa', 'Thhalv10016515m.g' => 'esa', 'Thhalv10029242m.g' => 'esa', 'TPR.G16654' => 'tpr', 'TPR.G20589' => 'tpr', 'TPR.G23029' => 'tpr', 'TPR.G27731' => 'tpr', 'TPR.G28889' => 'tpr', 'TPR.G28899' => 'tpr', 'TPR.G30846' => 'tpr', 'TPR.G5452' => 'tpr', 'TPR.G5713' => 'tpr', 'TPR.G9046' => 'tpr', 'TPR.G9061' => 'tpr', 'TWI09G1075' => 'twi', 'TWI12G0806' => 'twi', 'TWI18G0108' => 'twi', 'TWI53G1361' => 'twi', 'TWI73G0185' => 'twi', 'TWI73G0427' => 'twi', 'unitig_37.g12001' => 'ugi', 'unitig_747.g21660' => 'ugi', 'unitig_748.g7232' => 'ugi', 'unitig_748.g7315' => 'ugi', 'unitig_85.g27262' => 'ugi', 'unitig_92.g28220' => 'ugi', 'vmacro02632' => 'vma', 'vmacro08410' => 'vma', 'vmacro08411' => 'vma', 'vmacro15407' => 'vma', 'VMungo0251G3619' => 'vmu', 'VMungo0720G1204' => 'vmu', 'VMungo0720G1918' => 'vmu', 'VMungo0720G2387' => 'vmu', 'VMungo0720G2961' => 'vmu', 'VMungo1215G2154' => 'vmu', 'VMungo1383G2411' => 'vmu', 'Zm00001eb051130' => 'zma', 'Zm00001eb116830' => 'zma', 'Zm00001eb116850' => 'zma', 'Zm00001eb151740' => 'zma', 'Zm00001eb292360' => 'zma', 'Zm00001eb301640' => 'zma' ) $gf_id = 'HOM05D000856' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000856' ) $data_identifier = 'HOM05D000856' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 13, 'ath' => (int) 10, 'atr' => (int) 1, 'acertr' => (int) 8, 'cqu' => (int) 6, 'bca' => (int) 21, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 11, 'car' => (int) 9, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 8, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 5, 'fan' => (int) 16, 'fve' => (int) 6, 'gma' => (int) 11, 'ghi' => (int) 19, 'gra' => (int) 9, 'vvi' => (int) 7, 'han' => (int) 17, 'cav' => (int) 5, 'hma' => (int) 2, 'vpl' => (int) 2, 'sun' => (int) 7, 'lal' => (int) 9, 'lja' => (int) 5, 'lonja' => (int) 9, 'lsa' => (int) 5, 'mes' => (int) 8, 'mpo' => (int) 3, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 10, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 15, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 9, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 9, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 6, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 5, 'spa' => (int) 10, 'tar' => (int) 10, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 11, 'tpr' => (int) 11, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 4, 'vmu' => (int) 7, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb301640' $species_info = array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ) $local_species = 'atr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000856', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p00010' => 'bna', 'A03p04160' => 'bna', 'A03p17160' => 'bna', 'A04p23370' => 'bna', 'A05p14860' => 'bna', 'A08p37020' => 'bna', 'A09p08050' => 'bna', 'A09p66800' => 'bna', 'A09p67940' => 'bna', 'A10p02680' => 'bna', 'A10p05320' => 'bna', 'Aa31LG1G20560' => 'aar', 'Aa31LG1G20610' => 'aar', 'Aa31LG1G7810' => 'aar', 'Aa31LG5G3590' => 'aar', 'Aa31LG5G6140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3819' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4683' => 'aag', 'Actinidia04480' => 'ach', 'Actinidia05466' => 'ach', 'Actinidia08445' => 'ach', 'Actinidia21170' => 'ach', 'Actinidia24812' => 'ach', 'Actinidia24951' => 'ach', 'Actinidia40088' => 'ach', 'Ah.02g111660' => 'amhyb', 'Ah.11g048900' => 'amhyb', 'Ah.11g049910' => 'amhyb', 'AL1G13870' => 'aly', 'AL1G13880' => 'aly', 'AL1G16760' => 'aly', 'AL390U10020' => 'aly', 'AL4G25520' => 'aly', 'AL6G19890' => 'aly', 'AL6G19900' => 'aly', 'AL6G19910' => 'aly', 'AL8G40100' => 'aly', 'Aqoxy2G03562' => 'aox', 'Aqoxy5G00316' => 'aox', 'Aqoxy5G00926' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1628KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1H403S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2FU6SJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.882I6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8YRY2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YN1SN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AF70II' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZA8L1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F916KL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHRD8H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KTZ8QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S22EMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8M29T' => 'arhy', 'AT1G04270' => 'ath', 'AT1G04280' => 'ath', 'AT1G06750' => 'ath', 'AT1G33850' => 'ath', 'AT2G30630' => 'ath', 'AT5G09490' => 'ath', 'AT5G09500' => 'ath', 'AT5G09510' => 'ath', 'AT5G43640' => 'ath', 'AT5G63070' => 'ath', 'ATR0605G315' => 'atr', 'Atru.chr11.175' => 'acertr', 'Atru.chr11.653' => 'acertr', 'Atru.chr3.1616' => 'acertr', 'Atru.chr4.2230' => 'acertr', 'Atru.chr4.2232' => 'acertr', 'Atru.chr5.1598' => 'acertr', 'Atru.chr5.1600' => 'acertr', 'Atru.chr5.2188' => 'acertr', 'AUR62008326' => 'cqu', 'AUR62011922' => 'cqu', 'AUR62011924' => 'cqu', 'AUR62021771' => 'cqu', 'AUR62032237' => 'cqu', 'AUR62032240' => 'cqu', 'BcaB01g05572' => 'bca', 'BcaB02g10337' => 'bca', 'BcaB04g19944' => 'bca', 'BcaB05g21548' => 'bca', 'BcaB05g21549' => 'bca', 'BcaB05g23227' => 'bca', 'BcaB06g26256' => 'bca', 'BcaB06g26257' => 'bca', 'BcaB06g28379' => 'bca', 'BcaC02g11159' => 'bca', 'BcaC03g13258' => 'bca', 'BcaC03g13259' => 'bca', 'BcaC05g24456' => 'bca', 'BcaC05g24457' => 'bca', 'BcaC07g36922' => 'bca', 'BcaC07g36923' => 'bca', 'BcaC07g42050' => 'bca', 'BcaC07g42176' => 'bca', 'BcaC07g42195' => 'bca', 'BcaC07g42196' => 'bca', 'BcaNung06674' => 'bca', 'BolC2t06351H' => 'bol', 'BolC2t06352H' => 'bol', 'BolC3t12993H' => 'bol', 'BolC4t23525H' => 'bol', 'BolC4t27475H' => 'bol', 'BolC5t29025H' => 'bol', 'BolC5t29026H' => 'bol', 'BolC8t46898H' => 'bol', 'BolC8t46899H' => 'bol', 'BolC8t52630H' => 'bol', 'BolC8t52765H' => 'bol', 'BolC9t53824H' => 'bol', 'BraA03t09760Z' => 'bra', 'BraA03t10990Z' => 'bra', 'BraA05t20413Z' => 'bra', 'BraA08t35602Z' => 'bra', 'BraA09t36458Z' => 'bra', 'BraA09t42018Z' => 'bra', 'BraA09t42129Z' => 'bra', 'BraA10t42536Z' => 'bra', 'BraA10t42537Z' => 'bra', 'C01p10690' => 'bna', 'C02p03890' => 'bna', 'C02p03900' => 'bna', 'C03p04620' => 'bna', 'C04p19870' => 'bna', 'C04p59670' => 'bna', 'C05p02460' => 'bna', 'C05p02470' => 'bna', 'C08p00980' => 'bna', 'C08p00990' => 'bna', 'C08p51030' => 'bna', 'C08p52360' => 'bna', 'C09p09120' => 'bna', 'CAN.G19.15' => 'can', 'CAN.G251.10' => 'can', 'CAN.G251.9' => 'can', 'CAN.G398.24' => 'can', 'CAN.G410.32' => 'can', 'CAN.G881.2' => 'can', 'CANSAT01G3025' => 'cansat', 'CANSAT78G1211' => 'cansat', 'CANSAT78G1218' => 'cansat', 'CANSAT78G1521' => 'cansat', 'CANSAT78G1670' => 'cansat', 'CARHR003600' => 'chi', 'CARHR003610' => 'chi', 'CARHR006290' => 'chi', 'CARHR006430' => 'chi', 'CARHR124110' => 'chi', 'CARHR203870' => 'chi', 'CARHR203880' => 'chi', 'CARHR203890' => 'chi', 'CARHR276880' => 'chi', 'Carub.0001s0346' => 'cru', 'Carub.0001s0347' => 'cru', 'Carub.0001s0607' => 'cru', 'Carub.0003s2768' => 'cru', 'Carub.0003s2769' => 'cru', 'Carub.0004s1178' => 'cru', 'Carub.0006s0806' => 'cru', 'Carub.0006s0807' => 'cru', 'Carub.0006s0808' => 'cru', 'Carub.0008s0501' => 'cru', 'Carub.0008s2379' => 'cru', 'Ca_08655_v3' => 'car', 'Ca_08922_v3' => 'car', 'Ca_08923_v3' => 'car', 'Ca_09119_v3' => 'car', 'Ca_09703_v3' => 'car', 'Ca_09705_v3' => 'car', 'Ca_09835_v3' => 'car', 'Ca_26403_v3' => 'car', 'Ca_30719_v3' => 'car', 'CBR_g17958' => 'cbr', 'CBR_g40516' => 'cbr', 'Cc00_g05350' => 'ccan', 'Cc01_g18690' => 'ccan', 'Cc03_g04830' => 'ccan', 'Cc03_g04850' => 'ccan', 'CDE02G4469' => 'cde', 'CDE06G0883' => 'cde', 'CDE06G1295' => 'cde', 'CDE06G1390' => 'cde', 'CDE07G0584' => 'cde', 'CDE07G1084' => 'cde', 'CDE08G1259' => 'cde', 'Cfa002341' => 'cfa', 'Cfa024337' => 'cfa', 'Ciclev10004749m.g' => 'ccl', 'Ciclev10006127m.g' => 'ccl', 'Ciclev10019720m.g' => 'ccl', 'Ciclev10022652m.g' => 'ccl', 'CiPaw.01G190400' => 'cil', 'CiPaw.01G190500' => 'cil', 'CiPaw.02G116400' => 'cil', 'CiPaw.02G116500' => 'cil', 'CiPaw.04G183000' => 'cil', 'CiPaw.04G183300' => 'cil', 'ClCG05G004610' => 'cla', 'ClCG05G004620' => 'cla', 'ClCG06G006730' => 'cla', 'ClCG06G006740' => 'cla', 'ClCG11G003690' => 'cla', 'COL.COLO4_08276' => 'col', 'COL.COLO4_08277' => 'col', 'COL.COLO4_15787' => 'col', 'COL.COLO4_15789' => 'col', 'Cpa.g.c44815' => 'cpa', 'Cpa.g.sc52.144' => 'cpa', 'Cpa.g.sc58.46' => 'cpa', 'Cpa.g.sc58.47' => 'cpa', 'Cre08.g360900' => 'cre', 'CsaV3_2G013030' => 'csa', 'CsaV3_2G013050' => 'csa', 'CsaV3_2G015620' => 'csa', 'CsaV3_3G012590' => 'csa', 'CsaV3_3G012600' => 'csa', 'CSS0001641' => 'camsi', 'CSS0008310' => 'camsi', 'CSS0013011' => 'camsi', 'CSS0017147' => 'camsi', 'CSS0022970' => 'camsi', 'CSS0025655' => 'camsi', 'CSS0028665' => 'camsi', 'CSS0029117' => 'camsi', 'CSS0032024' => 'camsi', 'CSS0039681' => 'camsi', 'CSS0046516' => 'camsi', 'CSS0050307' => 'camsi', 'DCAR_005871' => 'dca', 'DCAR_007342' => 'dca', 'DCAR_024228' => 'dca', 'DCAR_027277' => 'dca', 'DCAR_030718' => 'dca', 'Dinv20287' => 'din', 'Dinv22461' => 'din', 'Dinv22464' => 'din', 'Dinv29912' => 'din', 'Dinv29913' => 'din', 'Dinv34580' => 'din', 'Dinv34582' => 'din', 'Dinv44632' => 'din', 'Duzib052G0266' => 'dzi', 'Duzib133G0907' => 'dzi', 'Duzib133G1034' => 'dzi', 'Duzib138G0207' => 'dzi', 'Duzib138G0491' => 'dzi', 'Duzib151G0812' => 'dzi', 'Duzib151G1166' => 'dzi', 'Duzib168G0192' => 'dzi', 'Duzib211G0077' => 'dzi', 'Duzib212G0429' => 'dzi', 'Duzib212G0472' => 'dzi', 'ECA233G2617' => 'eca', 'ECA236G4188' => 'eca', 'ECA240G0936' => 'eca', 'ECA240G1129' => 'eca', 'ECA247G0623' => 'eca', 'EL10Ac5g10451' => 'bvu', 'EL10Ac5g10453' => 'bvu', 'EL10Ac5g10894' => 'bvu', 'Eucgr.H00192' => 'egr', 'Eucgr.H00193' => 'egr', 'Eucgr.H00194' => 'egr', 'Eucgr.J01562' => 'egr', 'Eucgr.K03301' => 'egr', 'FAN02G0632' => 'fan', 'FAN05G5378' => 'fan', 'FAN09G3247' => 'fan', 'FAN12G0435' => 'fan', 'FAN12G2426' => 'fan', 'FAN14G1707' => 'fan', 'FAN14G4725' => 'fan', 'FAN15G2071' => 'fan', 'FAN17G3065' => 'fan', 'FAN19G1376' => 'fan', 'FAN20G0354' => 'fan', 'FAN20G2429' => 'fan', 'FAN20G2658' => 'fan', 'FAN24G2343' => 'fan', 'FAN27G2362' => 'fan', 'FAN28G1765' => 'fan', 'FvH4_1g16020' => 'fve', 'FvH4_2g04890' => 'fve', 'FvH4_2g22270' => 'fve', 'FvH4_4g02630' => 'fve', 'FvH4_4g02640' => 'fve', 'FvH4_6g02650' => 'fve', 'Glyma.02G140600' => 'gma', 'Glyma.03G159900' => 'gma', 'Glyma.05G234800' => 'gma', 'Glyma.07G269600' => 'gma', 'Glyma.08G042300' => 'gma', 'Glyma.10G033500' => 'gma', 'Glyma.10G185200' => 'gma', 'Glyma.17G004300' => 'gma', 'Glyma.19G161900' => 'gma', 'Glyma.20G205100' => 'gma', 'Glyma.20G205200' => 'gma', 'Gohir.A01G139101' => 'ghi', 'Gohir.A02G035600' => 'ghi', 'Gohir.A02G117901' => 'ghi', 'Gohir.A07G210100' => 'ghi', 'Gohir.A07G210200' => 'ghi', 'Gohir.A08G061100' => 'ghi', 'Gohir.A09G223000' => 'ghi', 'Gohir.A09G223100' => 'ghi', 'Gohir.A10G113900' => 'ghi', 'Gohir.A10G114000' => 'ghi', 'Gohir.D02G042300' => 'ghi', 'Gohir.D07G216100' => 'ghi', 'Gohir.D07G216200' => 'ghi', 'Gohir.D08G070400' => 'ghi', 'Gohir.D09G225000' => 'ghi', 'Gohir.D09G225100' => 'ghi', 'Gohir.D10G152300' => 'ghi', 'Gohir.D10G153200' => 'ghi', 'Gohir.D11G133701' => 'ghi', 'Gorai.004G074100' => 'gra', 'Gorai.005G046800' => 'gra', 'Gorai.006G246500' => 'gra', 'Gorai.006G246600' => 'gra', 'Gorai.007G142900' => 'gra', 'Gorai.011G171000' => 'gra', 'Gorai.011G171100' => 'gra', 'Gorai.013G104300' => 'gra', 'Gorai.013G104400' => 'gra', 'GSVIVG01000754001' => 'vvi', 'GSVIVG01000756001' => 'vvi', 'GSVIVG01010903001' => 'vvi', 'GSVIVG01017623001' => 'vvi', 'GSVIVG01018113001' => 'vvi', 'GSVIVG01018116001' => 'vvi', 'GSVIVG01018118001' => 'vvi', 'HanXRQChr03g0076211' => 'han', 'HanXRQChr03g0092431' => 'han', 'HanXRQChr03g0092441' => 'han', 'HanXRQChr03g0092591' => 'han', 'HanXRQChr03g0092671' => 'han', 'HanXRQChr03g0092681' => 'han', 'HanXRQChr03g0092691' => 'han', 'HanXRQChr03g0092701' => 'han', 'HanXRQChr03g0092721' => 'han', 'HanXRQChr03g0092731' => 'han', 'HanXRQChr04g0113681' => 'han', 'HanXRQChr10g0281371' => 'han', 'HanXRQChr11g0337141' => 'han', 'HanXRQChr13g0424521' => 'han', 'HanXRQChr13g0424531' => 'han', 'HanXRQChr13g0424541' => 'han', 'HanXRQChr16g0498221' => 'han', 'Haze_04377' => 'cav', 'Haze_11298' => 'cav', 'Haze_24547' => 'cav', 'Haze_24550' => 'cav', 'Haze_26587' => 'cav', 'Hma1.2p1_0650F.1_g195410' => 'hma', 'Hma1.2p1_0893F.1_g233470' => 'hma', 'HPP92_006508' => 'vpl', 'HPP92_024780' => 'vpl', 'Hund02688' => 'sun', 'Hund09380' => 'sun', 'Hund09381' => 'sun', 'Hund09832' => 'sun', 'Hund09833' => 'sun', 'Hund11351' => 'sun', 'Hund11513' => 'sun', 'Lalb_Chr06g0162591' => 'lal', 'Lalb_Chr06g0162601' => 'lal', 'Lalb_Chr06g0169321' => 'lal', 'Lalb_Chr09g0330951' => 'lal', 'Lalb_Chr16g0387631' => 'lal', 'Lalb_Chr21g0306241' => 'lal', 'Lalb_Chr25g0290051' => 'lal', 'Lalb_Chr25g0290061' => 'lal', 'Lalb_Chr25g0290071' => 'lal', 'Lj1g0003876' => 'lja', 'Lj1P1207T36' => 'lonja', 'Lj2C1156G12' => 'lonja', 'Lj3A793G39' => 'lonja', 'Lj3C580G2' => 'lonja', 'Lj3C780G2' => 'lonja', 'Lj3C780T4' => 'lonja', 'Lj3C793G9' => 'lonja', 'Lj4g0012960' => 'lja', 'Lj5g0021252' => 'lja', 'Lj5g0021484' => 'lja', 'Lj5g0024528' => 'lja', 'Lj6A399T12' => 'lonja', 'Lj6A656G65' => 'lonja', 'Lsat_1_v5_gn_3_125500' => 'lsa', 'Lsat_1_v5_gn_3_125540' => 'lsa', 'Lsat_1_v5_gn_5_72701' => 'lsa', 'Lsat_1_v5_gn_8_91560' => 'lsa', 'Lsat_1_v5_gn_9_9640' => 'lsa', 'Manes.01G200600' => 'mes', 'Manes.01G200700' => 'mes', 'Manes.03G168900' => 'mes', 'Manes.03G169000' => 'mes', 'Manes.05G085801' => 'mes', 'Manes.05G086200' => 'mes', 'Manes.15G036700' => 'mes', 'Manes.15G036900' => 'mes', 'Mapoly0004s0172' => 'mpo', 'Mapoly0023s0001' => 'mpo', 'Mapoly0142s0012' => 'mpo', 'MBI01_g32854_MAGBIO' => 'mbi', 'MBI11_g24427_MAGBIO' => 'mbi', 'MBI11_g47319_MAGBIO' => 'mbi', 'MCO01G433' => 'mco', 'MD00G1187800' => 'mdo', 'MD04G1226500' => 'mdo', 'MD05G1203900' => 'mdo', 'MD10G1191100' => 'mdo', 'MD12G1243500' => 'mdo', 'MD13G1207000' => 'mdo', 'MD13G1207100' => 'mdo', 'MD16G1208600' => 'mdo', 'Medtr1g050352' => 'mtr', 'Medtr1g070385' => 'mtr', 'Medtr1g070450' => 'mtr', 'Medtr1g075200' => 'mtr', 'Medtr1g075250' => 'mtr', 'Medtr1g075260' => 'mtr', 'Medtr1g475250' => 'mtr', 'Medtr4g075450' => 'mtr', 'Medtr7g096300' => 'mtr', 'Medtr8g105110' => 'mtr', 'MELO3C006470.2' => 'cme', 'MELO3C006471.2' => 'cme', 'MELO3C020772.2' => 'cme', 'MELO3C026780.2' => 'cme', 'MELO3C026781.2' => 'cme', 'Migut.D00390' => 'egut', 'Migut.G00435' => 'egut', 'Migut.G00436' => 'egut', 'Migut.G00718' => 'egut', 'MSTRG.21891' => 'ama', 'MSTRG.26910' => 'ama', 'MSTRG.4099' => 'ama', 'MSTRG.9925' => 'ama', 'Nitab4.5_0000165g0010' => 'nta', 'Nitab4.5_0000209g0180' => 'nta', 'Nitab4.5_0000244g0440' => 'nta', 'Nitab4.5_0000525g0220' => 'nta', 'Nitab4.5_0001597g0020' => 'nta', 'Nitab4.5_0001878g0040' => 'nta', 'Nitab4.5_0001878g0060' => 'nta', 'Nitab4.5_0002838g0100' => 'nta', 'Nitab4.5_0002838g0120' => 'nta', 'Nitab4.5_0004798g0030' => 'nta', 'Nitab4.5_0005420g0010' => 'nta', 'Nitab4.5_0005507g0010' => 'nta', 'Nitab4.5_0005574g0020' => 'nta', 'Nitab4.5_0005838g0010' => 'nta', 'Nitab4.5_0010580g0020' => 'nta', 'Nn1g02599' => 'nnu', 'Nn1g02608' => 'nnu', 'Nn3g17742' => 'nnu', 'Nn3g19534' => 'nnu', 'Nn3g19535' => 'nnu', 'Oeu008790.1' => 'oeu', 'Oeu008792.1' => 'oeu', 'Oeu032590.1' => 'oeu', 'Oeu035349.1' => 'oeu', 'Oeu049791.1' => 'oeu', 'Os01g0774500' => 'osa', 'Os03g0628800' => 'osa', 'Os03g0798600' => 'osa', 'Os05g0508800' => 'osa', 'Peaxi162Scf00036g02018' => 'pax', 'Peaxi162Scf00578g00032' => 'pax', 'Peaxi162Scf00578g00317' => 'pax', 'Peaxi162Scf00785g00114' => 'pax', 'Peaxi162Scf00813g00119' => 'pax', 'Peaxi162Scf00906g00227' => 'pax', 'PGR004G0875' => 'pgr', 'PGR004G2424' => 'pgr', 'PGR031G1239' => 'pgr', 'PGR031G2474' => 'pgr', 'PGR044G0423' => 'pgr', 'PGSC0003DMG400001128' => 'stu', 'PGSC0003DMG400007336' => 'stu', 'PGSC0003DMG400016318' => 'stu', 'PGSC0003DMG400016319' => 'stu', 'PGSC0003DMG400018074' => 'stu', 'Phvul.001G157700' => 'pvu', 'Phvul.002G148550' => 'pvu', 'Phvul.002G320200' => 'pvu', 'Phvul.003G089200' => 'pvu', 'Phvul.007G126000' => 'pvu', 'Phvul.007G126100' => 'pvu', 'Phvul.007G178000' => 'pvu', 'Phvul.007G178200' => 'pvu', 'Potri.002G043000' => 'ptr', 'Potri.002G043200' => 'ptr', 'Potri.003G123750' => 'ptr', 'Potri.005G055401' => 'ptr', 'Potri.005G219700' => 'ptr', 'Potri.005G220000' => 'ptr', 'Potri.008G161901' => 'ptr', 'Potri.008G162000' => 'ptr', 'Potri.008G162400' => 'ptr', 'Potri.010G076900' => 'ptr', 'Pp3c12_9180' => 'ppa', 'Pp3c13_19770' => 'ppa', 'Pp3c14_22950' => 'ppa', 'Pp3c16_12160' => 'ppa', 'Pp3c27_7820' => 'ppa', 'Pp3c2_3490' => 'ppa', 'Pp3c3_23700' => 'ppa', 'Pp3c3_36520' => 'ppa', 'Pp3c4_15250' => 'ppa', 'PRCOL_00007002' => 'pco', 'Prupe.1G030600' => 'ppe', 'Prupe.1G030700' => 'ppe', 'Prupe.6G345200' => 'ppe', 'Prupe.8G230300' => 'ppe', 'Prupe.8G230500' => 'ppe', 'Psat3g059600' => 'psa', 'Psat5g200920' => 'psa', 'Psat6g056440' => 'psa', 'Psat6g057360' => 'psa', 'Psat6g134120' => 'psa', 'Psat6g134160' => 'psa', 'Psat7g008640' => 'psa', 'Psat7g185240' => 'psa', 'PSO017G1330' => 'pso', 'PSO063G6097' => 'pso', 'PSO170G0835' => 'pso', 'PSO170G2499' => 'pso', 'PSO210G5058' => 'pso', 'PSO210G6154' => 'pso', 'PSO585G0031' => 'pso', 'PSO832G0264' => 'pso', 'PSO832G4288' => 'pso', 'QL03p027355' => 'qlo', 'QL03p027430' => 'qlo', 'QL04p081380' => 'qlo', 'QL06p015642' => 'qlo', 'QL06p015650' => 'qlo', 'QL06p015686' => 'qlo', 'QL12p042927' => 'qlo', 'QL93p1863_0035' => 'qlo', 'RcHm_v2.0_Chr3g0450581' => 'rch', 'RcHm_v2.0_Chr4g0390371' => 'rch', 'RcHm_v2.0_Chr4g0390381' => 'rch', 'RcHm_v2.0_Chr4g0390491' => 'rch', 'RcHm_v2.0_Chr4g0390501' => 'rch', 'RcHm_v2.0_Chr6g0289231' => 'rch', 'Rhsim04G0190400' => 'rsi', 'Rhsim04G0190500' => 'rsi', 'Rhsim04G0190600' => 'rsi', 'Rhsim13G0031400' => 'rsi', 'Rhsim13G0165600' => 'rsi', 'RhsimUnG0114600' => 'rsi', 'RhsimUnG0114700' => 'rsi', 'Sabra02G0034800' => 'sbr', 'Sabra02G0035100' => 'sbr', 'Sabra05G0168600' => 'sbr', 'Sabra05G0168800' => 'sbr', 'Sabra08G0123700' => 'sbr', 'Sabra10G0031900' => 'sbr', 'Sabra13G0039000' => 'sbr', 'SalBow2G0782' => 'sbo', 'SalBow2G1403' => 'sbo', 'SalBow4G0074' => 'sbo', 'SalBow4G2635' => 'sbo', 'SalBow5G3010' => 'sbo', 'Sc05g0000870' => 'sci', 'Sc05g0000890' => 'sci', 'Sc13g0005000' => 'sci', 'Sc13g0005030' => 'sci', 'Sc19g0003790' => 'sci', 'Sc19g0003800' => 'sci', 'Sed0003467' => 'sed', 'Sed0009355' => 'sed', 'Sed0009894' => 'sed', 'Sed0011972' => 'sed', 'Sed0021483' => 'sed', 'Sed0021750' => 'sed', 'Sed0026279' => 'sed', 'SEGI_05312' => 'sgi', 'SEGI_10112' => 'sgi', 'SEGI_15835' => 'sgi', 'SEGI_30386' => 'sgi', 'SEGI_34122' => 'sgi', 'SEGI_35063' => 'sgi', 'SGA_v2.0_scaffold101G29794' => 'sas', 'SGA_v2.0_scaffold1G00573' => 'sas', 'SGA_v2.0_scaffold79G25637' => 'sas', 'SGA_v2.0_scaffold88G27283' => 'sas', 'SGA_v2.0_scaffold88G27285' => 'sas', 'SGA_v2.0_scaffold88G27331' => 'sas', 'SHI09937' => 'shi', 'SMO119G0302' => 'smo', 'SMO137G0231' => 'smo', 'SMO367G1151' => 'smo', 'Solyc02g082000.3' => 'sly', 'Solyc06g031670.3' => 'sly', 'Solyc06g053810.3' => 'sly', 'Solyc07g025457.1' => 'sly', 'Solyc08g059740.1' => 'sly', 'Solyc08g059750.3' => 'sly', 'Solyc09g083370.3' => 'sly', 'Solyc12g038950.3' => 'sly', 'Sopen02g026630' => 'spe', 'Sopen06g018930' => 'spe', 'Sopen06g018940' => 'spe', 'Sopen08g009460' => 'spe', 'Sopen09g032290' => 'spe', 'Sp1g03080' => 'spa', 'Sp1g03090' => 'spa', 'Sp1g05480' => 'spa', 'Sp2g07860' => 'spa', 'Sp2g08430' => 'spa', 'Sp2g08440' => 'spa', 'Sp2g26200' => 'spa', 'Sp4g13170' => 'spa', 'Sp6g33840' => 'spa', 'SpUn1204_0010' => 'spa', 'TAR365G0908' => 'tar', 'TAR381G1270' => 'tar', 'TAR381G1651' => 'tar', 'TAR625G1131' => 'tar', 'TAR633G0962' => 'tar', 'TAR633G1729' => 'tar', 'TAR633G1864' => 'tar', 'TAR636G0221' => 'tar', 'TAR636G0314' => 'tar', 'TAR636G3202' => 'tar', 'THA.LOC104800805' => 'tha', 'THA.LOC104801096' => 'tha', 'THA.LOC104801555' => 'tha', 'THA.LOC104808491' => 'tha', 'THA.LOC104808595' => 'tha', 'THA.LOC104815985' => 'tha', 'THA.LOC104822250' => 'tha', 'THA.LOC104826071' => 'tha', 'Thecc.01G265200' => 'tca', 'Thecc.01G265300' => 'tca', 'Thecc.01G265700' => 'tca', 'Thecc.03G109100' => 'tca', 'Thecc.04G245900' => 'tca', 'Thecc.04G246000' => 'tca', 'Thhalv10003334m.g' => 'esa', 'Thhalv10005508m.g' => 'esa', 'Thhalv10005643m.g' => 'esa', 'Thhalv10007316m.g' => 'esa', 'Thhalv10009006m.g' => 'esa', 'Thhalv10009309m.g' => 'esa', 'Thhalv10014917m.g' => 'esa', 'Thhalv10014919m.g' => 'esa', 'Thhalv10015393m.g' => 'esa', 'Thhalv10016515m.g' => 'esa', 'Thhalv10029242m.g' => 'esa', 'TPR.G16654' => 'tpr', 'TPR.G20589' => 'tpr', 'TPR.G23029' => 'tpr', 'TPR.G27731' => 'tpr', 'TPR.G28889' => 'tpr', 'TPR.G28899' => 'tpr', 'TPR.G30846' => 'tpr', 'TPR.G5452' => 'tpr', 'TPR.G5713' => 'tpr', 'TPR.G9046' => 'tpr', 'TPR.G9061' => 'tpr', 'TWI09G1075' => 'twi', 'TWI12G0806' => 'twi', 'TWI18G0108' => 'twi', 'TWI53G1361' => 'twi', 'TWI73G0185' => 'twi', 'TWI73G0427' => 'twi', 'unitig_37.g12001' => 'ugi', 'unitig_747.g21660' => 'ugi', 'unitig_748.g7232' => 'ugi', 'unitig_748.g7315' => 'ugi', 'unitig_85.g27262' => 'ugi', 'unitig_92.g28220' => 'ugi', 'vmacro02632' => 'vma', 'vmacro08410' => 'vma', 'vmacro08411' => 'vma', 'vmacro15407' => 'vma', 'VMungo0251G3619' => 'vmu', 'VMungo0720G1204' => 'vmu', 'VMungo0720G1918' => 'vmu', 'VMungo0720G2387' => 'vmu', 'VMungo0720G2961' => 'vmu', 'VMungo1215G2154' => 'vmu', 'VMungo1383G2411' => 'vmu', 'Zm00001eb051130' => 'zma', 'Zm00001eb116830' => 'zma', 'Zm00001eb116850' => 'zma', 'Zm00001eb151740' => 'zma', 'Zm00001eb292360' => 'zma', 'Zm00001eb301640' => 'zma' ), 'gf_id' => 'HOM05D000856', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000856' ), 'data_identifier' => 'HOM05D000856', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000856', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p00010' => 'bna', 'A03p04160' => 'bna', 'A03p17160' => 'bna', 'A04p23370' => 'bna', 'A05p14860' => 'bna', 'A08p37020' => 'bna', 'A09p08050' => 'bna', 'A09p66800' => 'bna', 'A09p67940' => 'bna', 'A10p02680' => 'bna', 'A10p05320' => 'bna', 'Aa31LG1G20560' => 'aar', 'Aa31LG1G20610' => 'aar', 'Aa31LG1G7810' => 'aar', 'Aa31LG5G3590' => 'aar', 'Aa31LG5G6140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3819' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4683' => 'aag', 'Actinidia04480' => 'ach', 'Actinidia05466' => 'ach', 'Actinidia08445' => 'ach', 'Actinidia21170' => 'ach', 'Actinidia24812' => 'ach', 'Actinidia24951' => 'ach', 'Actinidia40088' => 'ach', 'Ah.02g111660' => 'amhyb', 'Ah.11g048900' => 'amhyb', 'Ah.11g049910' => 'amhyb', 'AL1G13870' => 'aly', 'AL1G13880' => 'aly', 'AL1G16760' => 'aly', 'AL390U10020' => 'aly', 'AL4G25520' => 'aly', 'AL6G19890' => 'aly', 'AL6G19900' => 'aly', 'AL6G19910' => 'aly', 'AL8G40100' => 'aly', 'Aqoxy2G03562' => 'aox', 'Aqoxy5G00316' => 'aox', 'Aqoxy5G00926' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1628KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1H403S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2FU6SJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.882I6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8YRY2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YN1SN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AF70II' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZA8L1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F916KL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHRD8H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KTZ8QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S22EMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8M29T' => 'arhy', 'AT1G04270' => 'ath', 'AT1G04280' => 'ath', 'AT1G06750' => 'ath', 'AT1G33850' => 'ath', 'AT2G30630' => 'ath', 'AT5G09490' => 'ath', 'AT5G09500' => 'ath', 'AT5G09510' => 'ath', 'AT5G43640' => 'ath', 'AT5G63070' => 'ath', 'ATR0605G315' => 'atr', 'Atru.chr11.175' => 'acertr', 'Atru.chr11.653' => 'acertr', 'Atru.chr3.1616' => 'acertr', 'Atru.chr4.2230' => 'acertr', 'Atru.chr4.2232' => 'acertr', 'Atru.chr5.1598' => 'acertr', 'Atru.chr5.1600' => 'acertr', 'Atru.chr5.2188' => 'acertr', 'AUR62008326' => 'cqu', 'AUR62011922' => 'cqu', 'AUR62011924' => 'cqu', 'AUR62021771' => 'cqu', 'AUR62032237' => 'cqu', 'AUR62032240' => 'cqu', 'BcaB01g05572' => 'bca', 'BcaB02g10337' => 'bca', 'BcaB04g19944' => 'bca', 'BcaB05g21548' => 'bca', 'BcaB05g21549' => 'bca', 'BcaB05g23227' => 'bca', 'BcaB06g26256' => 'bca', 'BcaB06g26257' => 'bca', 'BcaB06g28379' => 'bca', 'BcaC02g11159' => 'bca', 'BcaC03g13258' => 'bca', 'BcaC03g13259' => 'bca', 'BcaC05g24456' => 'bca', 'BcaC05g24457' => 'bca', 'BcaC07g36922' => 'bca', 'BcaC07g36923' => 'bca', 'BcaC07g42050' => 'bca', 'BcaC07g42176' => 'bca', 'BcaC07g42195' => 'bca', 'BcaC07g42196' => 'bca', 'BcaNung06674' => 'bca', 'BolC2t06351H' => 'bol', 'BolC2t06352H' => 'bol', 'BolC3t12993H' => 'bol', 'BolC4t23525H' => 'bol', 'BolC4t27475H' => 'bol', 'BolC5t29025H' => 'bol', 'BolC5t29026H' => 'bol', 'BolC8t46898H' => 'bol', 'BolC8t46899H' => 'bol', 'BolC8t52630H' => 'bol', 'BolC8t52765H' => 'bol', 'BolC9t53824H' => 'bol', 'BraA03t09760Z' => 'bra', 'BraA03t10990Z' => 'bra', 'BraA05t20413Z' => 'bra', 'BraA08t35602Z' => 'bra', 'BraA09t36458Z' => 'bra', 'BraA09t42018Z' => 'bra', 'BraA09t42129Z' => 'bra', 'BraA10t42536Z' => 'bra', 'BraA10t42537Z' => 'bra', 'C01p10690' => 'bna', 'C02p03890' => 'bna', 'C02p03900' => 'bna', 'C03p04620' => 'bna', 'C04p19870' => 'bna', 'C04p59670' => 'bna', 'C05p02460' => 'bna', 'C05p02470' => 'bna', 'C08p00980' => 'bna', 'C08p00990' => 'bna', 'C08p51030' => 'bna', 'C08p52360' => 'bna', 'C09p09120' => 'bna', 'CAN.G19.15' => 'can', 'CAN.G251.10' => 'can', 'CAN.G251.9' => 'can', 'CAN.G398.24' => 'can', 'CAN.G410.32' => 'can', 'CAN.G881.2' => 'can', 'CANSAT01G3025' => 'cansat', 'CANSAT78G1211' => 'cansat', 'CANSAT78G1218' => 'cansat', 'CANSAT78G1521' => 'cansat', 'CANSAT78G1670' => 'cansat', 'CARHR003600' => 'chi', 'CARHR003610' => 'chi', 'CARHR006290' => 'chi', 'CARHR006430' => 'chi', 'CARHR124110' => 'chi', 'CARHR203870' => 'chi', 'CARHR203880' => 'chi', 'CARHR203890' => 'chi', 'CARHR276880' => 'chi', 'Carub.0001s0346' => 'cru', 'Carub.0001s0347' => 'cru', 'Carub.0001s0607' => 'cru', 'Carub.0003s2768' => 'cru', 'Carub.0003s2769' => 'cru', 'Carub.0004s1178' => 'cru', 'Carub.0006s0806' => 'cru', 'Carub.0006s0807' => 'cru', 'Carub.0006s0808' => 'cru', 'Carub.0008s0501' => 'cru', 'Carub.0008s2379' => 'cru', 'Ca_08655_v3' => 'car', 'Ca_08922_v3' => 'car', 'Ca_08923_v3' => 'car', 'Ca_09119_v3' => 'car', 'Ca_09703_v3' => 'car', 'Ca_09705_v3' => 'car', 'Ca_09835_v3' => 'car', 'Ca_26403_v3' => 'car', 'Ca_30719_v3' => 'car', 'CBR_g17958' => 'cbr', 'CBR_g40516' => 'cbr', 'Cc00_g05350' => 'ccan', 'Cc01_g18690' => 'ccan', 'Cc03_g04830' => 'ccan', 'Cc03_g04850' => 'ccan', 'CDE02G4469' => 'cde', 'CDE06G0883' => 'cde', 'CDE06G1295' => 'cde', 'CDE06G1390' => 'cde', 'CDE07G0584' => 'cde', 'CDE07G1084' => 'cde', 'CDE08G1259' => 'cde', 'Cfa002341' => 'cfa', 'Cfa024337' => 'cfa', 'Ciclev10004749m.g' => 'ccl', 'Ciclev10006127m.g' => 'ccl', 'Ciclev10019720m.g' => 'ccl', 'Ciclev10022652m.g' => 'ccl', 'CiPaw.01G190400' => 'cil', 'CiPaw.01G190500' => 'cil', 'CiPaw.02G116400' => 'cil', 'CiPaw.02G116500' => 'cil', 'CiPaw.04G183000' => 'cil', 'CiPaw.04G183300' => 'cil', 'ClCG05G004610' => 'cla', 'ClCG05G004620' => 'cla', 'ClCG06G006730' => 'cla', 'ClCG06G006740' => 'cla', 'ClCG11G003690' => 'cla', 'COL.COLO4_08276' => 'col', 'COL.COLO4_08277' => 'col', 'COL.COLO4_15787' => 'col', 'COL.COLO4_15789' => 'col', 'Cpa.g.c44815' => 'cpa', 'Cpa.g.sc52.144' => 'cpa', 'Cpa.g.sc58.46' => 'cpa', 'Cpa.g.sc58.47' => 'cpa', 'Cre08.g360900' => 'cre', 'CsaV3_2G013030' => 'csa', 'CsaV3_2G013050' => 'csa', 'CsaV3_2G015620' => 'csa', 'CsaV3_3G012590' => 'csa', 'CsaV3_3G012600' => 'csa', 'CSS0001641' => 'camsi', 'CSS0008310' => 'camsi', 'CSS0013011' => 'camsi', 'CSS0017147' => 'camsi', 'CSS0022970' => 'camsi', 'CSS0025655' => 'camsi', 'CSS0028665' => 'camsi', 'CSS0029117' => 'camsi', 'CSS0032024' => 'camsi', 'CSS0039681' => 'camsi', 'CSS0046516' => 'camsi', 'CSS0050307' => 'camsi', 'DCAR_005871' => 'dca', 'DCAR_007342' => 'dca', 'DCAR_024228' => 'dca', 'DCAR_027277' => 'dca', 'DCAR_030718' => 'dca', 'Dinv20287' => 'din', 'Dinv22461' => 'din', 'Dinv22464' => 'din', 'Dinv29912' => 'din', 'Dinv29913' => 'din', 'Dinv34580' => 'din', 'Dinv34582' => 'din', 'Dinv44632' => 'din', 'Duzib052G0266' => 'dzi', 'Duzib133G0907' => 'dzi', 'Duzib133G1034' => 'dzi', 'Duzib138G0207' => 'dzi', 'Duzib138G0491' => 'dzi', 'Duzib151G0812' => 'dzi', 'Duzib151G1166' => 'dzi', 'Duzib168G0192' => 'dzi', 'Duzib211G0077' => 'dzi', 'Duzib212G0429' => 'dzi', 'Duzib212G0472' => 'dzi', 'ECA233G2617' => 'eca', 'ECA236G4188' => 'eca', 'ECA240G0936' => 'eca', 'ECA240G1129' => 'eca', 'ECA247G0623' => 'eca', 'EL10Ac5g10451' => 'bvu', 'EL10Ac5g10453' => 'bvu', 'EL10Ac5g10894' => 'bvu', 'Eucgr.H00192' => 'egr', 'Eucgr.H00193' => 'egr', 'Eucgr.H00194' => 'egr', 'Eucgr.J01562' => 'egr', 'Eucgr.K03301' => 'egr', 'FAN02G0632' => 'fan', 'FAN05G5378' => 'fan', 'FAN09G3247' => 'fan', 'FAN12G0435' => 'fan', 'FAN12G2426' => 'fan', 'FAN14G1707' => 'fan', 'FAN14G4725' => 'fan', 'FAN15G2071' => 'fan', 'FAN17G3065' => 'fan', 'FAN19G1376' => 'fan', 'FAN20G0354' => 'fan', 'FAN20G2429' => 'fan', 'FAN20G2658' => 'fan', 'FAN24G2343' => 'fan', 'FAN27G2362' => 'fan', 'FAN28G1765' => 'fan', 'FvH4_1g16020' => 'fve', 'FvH4_2g04890' => 'fve', 'FvH4_2g22270' => 'fve', 'FvH4_4g02630' => 'fve', 'FvH4_4g02640' => 'fve', 'FvH4_6g02650' => 'fve', 'Glyma.02G140600' => 'gma', 'Glyma.03G159900' => 'gma', 'Glyma.05G234800' => 'gma', 'Glyma.07G269600' => 'gma', 'Glyma.08G042300' => 'gma', 'Glyma.10G033500' => 'gma', 'Glyma.10G185200' => 'gma', 'Glyma.17G004300' => 'gma', 'Glyma.19G161900' => 'gma', 'Glyma.20G205100' => 'gma', 'Glyma.20G205200' => 'gma', 'Gohir.A01G139101' => 'ghi', 'Gohir.A02G035600' => 'ghi', 'Gohir.A02G117901' => 'ghi', 'Gohir.A07G210100' => 'ghi', 'Gohir.A07G210200' => 'ghi', 'Gohir.A08G061100' => 'ghi', 'Gohir.A09G223000' => 'ghi', 'Gohir.A09G223100' => 'ghi', 'Gohir.A10G113900' => 'ghi', 'Gohir.A10G114000' => 'ghi', 'Gohir.D02G042300' => 'ghi', 'Gohir.D07G216100' => 'ghi', 'Gohir.D07G216200' => 'ghi', 'Gohir.D08G070400' => 'ghi', 'Gohir.D09G225000' => 'ghi', 'Gohir.D09G225100' => 'ghi', 'Gohir.D10G152300' => 'ghi', 'Gohir.D10G153200' => 'ghi', 'Gohir.D11G133701' => 'ghi', 'Gorai.004G074100' => 'gra', 'Gorai.005G046800' => 'gra', 'Gorai.006G246500' => 'gra', 'Gorai.006G246600' => 'gra', 'Gorai.007G142900' => 'gra', 'Gorai.011G171000' => 'gra', 'Gorai.011G171100' => 'gra', 'Gorai.013G104300' => 'gra', 'Gorai.013G104400' => 'gra', 'GSVIVG01000754001' => 'vvi', 'GSVIVG01000756001' => 'vvi', 'GSVIVG01010903001' => 'vvi', 'GSVIVG01017623001' => 'vvi', 'GSVIVG01018113001' => 'vvi', 'GSVIVG01018116001' => 'vvi', 'GSVIVG01018118001' => 'vvi', 'HanXRQChr03g0076211' => 'han', 'HanXRQChr03g0092431' => 'han', 'HanXRQChr03g0092441' => 'han', 'HanXRQChr03g0092591' => 'han', 'HanXRQChr03g0092671' => 'han', 'HanXRQChr03g0092681' => 'han', 'HanXRQChr03g0092691' => 'han', 'HanXRQChr03g0092701' => 'han', 'HanXRQChr03g0092721' => 'han', 'HanXRQChr03g0092731' => 'han', 'HanXRQChr04g0113681' => 'han', 'HanXRQChr10g0281371' => 'han', 'HanXRQChr11g0337141' => 'han', 'HanXRQChr13g0424521' => 'han', 'HanXRQChr13g0424531' => 'han', 'HanXRQChr13g0424541' => 'han', 'HanXRQChr16g0498221' => 'han', 'Haze_04377' => 'cav', 'Haze_11298' => 'cav', 'Haze_24547' => 'cav', 'Haze_24550' => 'cav', 'Haze_26587' => 'cav', 'Hma1.2p1_0650F.1_g195410' => 'hma', 'Hma1.2p1_0893F.1_g233470' => 'hma', 'HPP92_006508' => 'vpl', 'HPP92_024780' => 'vpl', 'Hund02688' => 'sun', 'Hund09380' => 'sun', 'Hund09381' => 'sun', 'Hund09832' => 'sun', 'Hund09833' => 'sun', 'Hund11351' => 'sun', 'Hund11513' => 'sun', 'Lalb_Chr06g0162591' => 'lal', 'Lalb_Chr06g0162601' => 'lal', 'Lalb_Chr06g0169321' => 'lal', 'Lalb_Chr09g0330951' => 'lal', 'Lalb_Chr16g0387631' => 'lal', 'Lalb_Chr21g0306241' => 'lal', 'Lalb_Chr25g0290051' => 'lal', 'Lalb_Chr25g0290061' => 'lal', 'Lalb_Chr25g0290071' => 'lal', 'Lj1g0003876' => 'lja', 'Lj1P1207T36' => 'lonja', 'Lj2C1156G12' => 'lonja', 'Lj3A793G39' => 'lonja', 'Lj3C580G2' => 'lonja', 'Lj3C780G2' => 'lonja', 'Lj3C780T4' => 'lonja', 'Lj3C793G9' => 'lonja', 'Lj4g0012960' => 'lja', 'Lj5g0021252' => 'lja', 'Lj5g0021484' => 'lja', 'Lj5g0024528' => 'lja', 'Lj6A399T12' => 'lonja', 'Lj6A656G65' => 'lonja', 'Lsat_1_v5_gn_3_125500' => 'lsa', 'Lsat_1_v5_gn_3_125540' => 'lsa', 'Lsat_1_v5_gn_5_72701' => 'lsa', 'Lsat_1_v5_gn_8_91560' => 'lsa', 'Lsat_1_v5_gn_9_9640' => 'lsa', 'Manes.01G200600' => 'mes', 'Manes.01G200700' => 'mes', 'Manes.03G168900' => 'mes', 'Manes.03G169000' => 'mes', 'Manes.05G085801' => 'mes', 'Manes.05G086200' => 'mes', 'Manes.15G036700' => 'mes', 'Manes.15G036900' => 'mes', 'Mapoly0004s0172' => 'mpo', 'Mapoly0023s0001' => 'mpo', 'Mapoly0142s0012' => 'mpo', 'MBI01_g32854_MAGBIO' => 'mbi', 'MBI11_g24427_MAGBIO' => 'mbi', 'MBI11_g47319_MAGBIO' => 'mbi', 'MCO01G433' => 'mco', 'MD00G1187800' => 'mdo', 'MD04G1226500' => 'mdo', 'MD05G1203900' => 'mdo', 'MD10G1191100' => 'mdo', 'MD12G1243500' => 'mdo', 'MD13G1207000' => 'mdo', 'MD13G1207100' => 'mdo', 'MD16G1208600' => 'mdo', 'Medtr1g050352' => 'mtr', 'Medtr1g070385' => 'mtr', 'Medtr1g070450' => 'mtr', 'Medtr1g075200' => 'mtr', 'Medtr1g075250' => 'mtr', 'Medtr1g075260' => 'mtr', 'Medtr1g475250' => 'mtr', 'Medtr4g075450' => 'mtr', 'Medtr7g096300' => 'mtr', 'Medtr8g105110' => 'mtr', 'MELO3C006470.2' => 'cme', 'MELO3C006471.2' => 'cme', 'MELO3C020772.2' => 'cme', 'MELO3C026780.2' => 'cme', 'MELO3C026781.2' => 'cme', 'Migut.D00390' => 'egut', 'Migut.G00435' => 'egut', 'Migut.G00436' => 'egut', 'Migut.G00718' => 'egut', 'MSTRG.21891' => 'ama', 'MSTRG.26910' => 'ama', 'MSTRG.4099' => 'ama', 'MSTRG.9925' => 'ama', 'Nitab4.5_0000165g0010' => 'nta', 'Nitab4.5_0000209g0180' => 'nta', 'Nitab4.5_0000244g0440' => 'nta', 'Nitab4.5_0000525g0220' => 'nta', 'Nitab4.5_0001597g0020' => 'nta', 'Nitab4.5_0001878g0040' => 'nta', 'Nitab4.5_0001878g0060' => 'nta', 'Nitab4.5_0002838g0100' => 'nta', 'Nitab4.5_0002838g0120' => 'nta', 'Nitab4.5_0004798g0030' => 'nta', 'Nitab4.5_0005420g0010' => 'nta', 'Nitab4.5_0005507g0010' => 'nta', 'Nitab4.5_0005574g0020' => 'nta', 'Nitab4.5_0005838g0010' => 'nta', 'Nitab4.5_0010580g0020' => 'nta', 'Nn1g02599' => 'nnu', 'Nn1g02608' => 'nnu', 'Nn3g17742' => 'nnu', 'Nn3g19534' => 'nnu', 'Nn3g19535' => 'nnu', 'Oeu008790.1' => 'oeu', 'Oeu008792.1' => 'oeu', 'Oeu032590.1' => 'oeu', 'Oeu035349.1' => 'oeu', 'Oeu049791.1' => 'oeu', 'Os01g0774500' => 'osa', 'Os03g0628800' => 'osa', 'Os03g0798600' => 'osa', 'Os05g0508800' => 'osa', 'Peaxi162Scf00036g02018' => 'pax', 'Peaxi162Scf00578g00032' => 'pax', 'Peaxi162Scf00578g00317' => 'pax', 'Peaxi162Scf00785g00114' => 'pax', 'Peaxi162Scf00813g00119' => 'pax', 'Peaxi162Scf00906g00227' => 'pax', 'PGR004G0875' => 'pgr', 'PGR004G2424' => 'pgr', 'PGR031G1239' => 'pgr', 'PGR031G2474' => 'pgr', 'PGR044G0423' => 'pgr', 'PGSC0003DMG400001128' => 'stu', 'PGSC0003DMG400007336' => 'stu', 'PGSC0003DMG400016318' => 'stu', 'PGSC0003DMG400016319' => 'stu', 'PGSC0003DMG400018074' => 'stu', 'Phvul.001G157700' => 'pvu', 'Phvul.002G148550' => 'pvu', 'Phvul.002G320200' => 'pvu', 'Phvul.003G089200' => 'pvu', 'Phvul.007G126000' => 'pvu', 'Phvul.007G126100' => 'pvu', 'Phvul.007G178000' => 'pvu', 'Phvul.007G178200' => 'pvu', 'Potri.002G043000' => 'ptr', 'Potri.002G043200' => 'ptr', 'Potri.003G123750' => 'ptr', 'Potri.005G055401' => 'ptr', 'Potri.005G219700' => 'ptr', 'Potri.005G220000' => 'ptr', 'Potri.008G161901' => 'ptr', 'Potri.008G162000' => 'ptr', 'Potri.008G162400' => 'ptr', 'Potri.010G076900' => 'ptr', 'Pp3c12_9180' => 'ppa', 'Pp3c13_19770' => 'ppa', 'Pp3c14_22950' => 'ppa', 'Pp3c16_12160' => 'ppa', 'Pp3c27_7820' => 'ppa', 'Pp3c2_3490' => 'ppa', 'Pp3c3_23700' => 'ppa', 'Pp3c3_36520' => 'ppa', 'Pp3c4_15250' => 'ppa', 'PRCOL_00007002' => 'pco', 'Prupe.1G030600' => 'ppe', 'Prupe.1G030700' => 'ppe', 'Prupe.6G345200' => 'ppe', 'Prupe.8G230300' => 'ppe', 'Prupe.8G230500' => 'ppe', 'Psat3g059600' => 'psa', 'Psat5g200920' => 'psa', 'Psat6g056440' => 'psa', 'Psat6g057360' => 'psa', 'Psat6g134120' => 'psa', 'Psat6g134160' => 'psa', 'Psat7g008640' => 'psa', 'Psat7g185240' => 'psa', 'PSO017G1330' => 'pso', 'PSO063G6097' => 'pso', 'PSO170G0835' => 'pso', 'PSO170G2499' => 'pso', 'PSO210G5058' => 'pso', 'PSO210G6154' => 'pso', 'PSO585G0031' => 'pso', 'PSO832G0264' => 'pso', 'PSO832G4288' => 'pso', 'QL03p027355' => 'qlo', 'QL03p027430' => 'qlo', 'QL04p081380' => 'qlo', 'QL06p015642' => 'qlo', 'QL06p015650' => 'qlo', 'QL06p015686' => 'qlo', 'QL12p042927' => 'qlo', 'QL93p1863_0035' => 'qlo', 'RcHm_v2.0_Chr3g0450581' => 'rch', 'RcHm_v2.0_Chr4g0390371' => 'rch', 'RcHm_v2.0_Chr4g0390381' => 'rch', 'RcHm_v2.0_Chr4g0390491' => 'rch', 'RcHm_v2.0_Chr4g0390501' => 'rch', 'RcHm_v2.0_Chr6g0289231' => 'rch', 'Rhsim04G0190400' => 'rsi', 'Rhsim04G0190500' => 'rsi', 'Rhsim04G0190600' => 'rsi', 'Rhsim13G0031400' => 'rsi', 'Rhsim13G0165600' => 'rsi', 'RhsimUnG0114600' => 'rsi', 'RhsimUnG0114700' => 'rsi', 'Sabra02G0034800' => 'sbr', 'Sabra02G0035100' => 'sbr', 'Sabra05G0168600' => 'sbr', 'Sabra05G0168800' => 'sbr', 'Sabra08G0123700' => 'sbr', 'Sabra10G0031900' => 'sbr', 'Sabra13G0039000' => 'sbr', 'SalBow2G0782' => 'sbo', 'SalBow2G1403' => 'sbo', 'SalBow4G0074' => 'sbo', 'SalBow4G2635' => 'sbo', 'SalBow5G3010' => 'sbo', 'Sc05g0000870' => 'sci', 'Sc05g0000890' => 'sci', 'Sc13g0005000' => 'sci', 'Sc13g0005030' => 'sci', 'Sc19g0003790' => 'sci', 'Sc19g0003800' => 'sci', 'Sed0003467' => 'sed', 'Sed0009355' => 'sed', 'Sed0009894' => 'sed', 'Sed0011972' => 'sed', 'Sed0021483' => 'sed', 'Sed0021750' => 'sed', 'Sed0026279' => 'sed', 'SEGI_05312' => 'sgi', 'SEGI_10112' => 'sgi', 'SEGI_15835' => 'sgi', 'SEGI_30386' => 'sgi', 'SEGI_34122' => 'sgi', 'SEGI_35063' => 'sgi', 'SGA_v2.0_scaffold101G29794' => 'sas', 'SGA_v2.0_scaffold1G00573' => 'sas', 'SGA_v2.0_scaffold79G25637' => 'sas', 'SGA_v2.0_scaffold88G27283' => 'sas', 'SGA_v2.0_scaffold88G27285' => 'sas', 'SGA_v2.0_scaffold88G27331' => 'sas', 'SHI09937' => 'shi', 'SMO119G0302' => 'smo', 'SMO137G0231' => 'smo', 'SMO367G1151' => 'smo', 'Solyc02g082000.3' => 'sly', 'Solyc06g031670.3' => 'sly', 'Solyc06g053810.3' => 'sly', 'Solyc07g025457.1' => 'sly', 'Solyc08g059740.1' => 'sly', 'Solyc08g059750.3' => 'sly', 'Solyc09g083370.3' => 'sly', 'Solyc12g038950.3' => 'sly', 'Sopen02g026630' => 'spe', 'Sopen06g018930' => 'spe', 'Sopen06g018940' => 'spe', 'Sopen08g009460' => 'spe', 'Sopen09g032290' => 'spe', 'Sp1g03080' => 'spa', 'Sp1g03090' => 'spa', 'Sp1g05480' => 'spa', 'Sp2g07860' => 'spa', 'Sp2g08430' => 'spa', 'Sp2g08440' => 'spa', 'Sp2g26200' => 'spa', 'Sp4g13170' => 'spa', 'Sp6g33840' => 'spa', 'SpUn1204_0010' => 'spa', 'TAR365G0908' => 'tar', 'TAR381G1270' => 'tar', 'TAR381G1651' => 'tar', 'TAR625G1131' => 'tar', 'TAR633G0962' => 'tar', 'TAR633G1729' => 'tar', 'TAR633G1864' => 'tar', 'TAR636G0221' => 'tar', 'TAR636G0314' => 'tar', 'TAR636G3202' => 'tar', 'THA.LOC104800805' => 'tha', 'THA.LOC104801096' => 'tha', 'THA.LOC104801555' => 'tha', 'THA.LOC104808491' => 'tha', 'THA.LOC104808595' => 'tha', 'THA.LOC104815985' => 'tha', 'THA.LOC104822250' => 'tha', 'THA.LOC104826071' => 'tha', 'Thecc.01G265200' => 'tca', 'Thecc.01G265300' => 'tca', 'Thecc.01G265700' => 'tca', 'Thecc.03G109100' => 'tca', 'Thecc.04G245900' => 'tca', 'Thecc.04G246000' => 'tca', 'Thhalv10003334m.g' => 'esa', 'Thhalv10005508m.g' => 'esa', 'Thhalv10005643m.g' => 'esa', 'Thhalv10007316m.g' => 'esa', 'Thhalv10009006m.g' => 'esa', 'Thhalv10009309m.g' => 'esa', 'Thhalv10014917m.g' => 'esa', 'Thhalv10014919m.g' => 'esa', 'Thhalv10015393m.g' => 'esa', 'Thhalv10016515m.g' => 'esa', 'Thhalv10029242m.g' => 'esa', 'TPR.G16654' => 'tpr', 'TPR.G20589' => 'tpr', 'TPR.G23029' => 'tpr', 'TPR.G27731' => 'tpr', 'TPR.G28889' => 'tpr', 'TPR.G28899' => 'tpr', 'TPR.G30846' => 'tpr', 'TPR.G5452' => 'tpr', 'TPR.G5713' => 'tpr', 'TPR.G9046' => 'tpr', 'TPR.G9061' => 'tpr', 'TWI09G1075' => 'twi', 'TWI12G0806' => 'twi', 'TWI18G0108' => 'twi', 'TWI53G1361' => 'twi', 'TWI73G0185' => 'twi', 'TWI73G0427' => 'twi', 'unitig_37.g12001' => 'ugi', 'unitig_747.g21660' => 'ugi', 'unitig_748.g7232' => 'ugi', 'unitig_748.g7315' => 'ugi', 'unitig_85.g27262' => 'ugi', 'unitig_92.g28220' => 'ugi', 'vmacro02632' => 'vma', 'vmacro08410' => 'vma', 'vmacro08411' => 'vma', 'vmacro15407' => 'vma', 'VMungo0251G3619' => 'vmu', 'VMungo0720G1204' => 'vmu', 'VMungo0720G1918' => 'vmu', 'VMungo0720G2387' => 'vmu', 'VMungo0720G2961' => 'vmu', 'VMungo1215G2154' => 'vmu', 'VMungo1383G2411' => 'vmu', 'Zm00001eb051130' => 'zma', 'Zm00001eb116830' => 'zma', 'Zm00001eb116850' => 'zma', 'Zm00001eb151740' => 'zma', 'Zm00001eb292360' => 'zma', 'Zm00001eb301640' => 'zma' ) $gf_id = 'HOM05D000856' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000856' ) $data_identifier = 'HOM05D000856' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 13, 'ath' => (int) 10, 'atr' => (int) 1, 'acertr' => (int) 8, 'cqu' => (int) 6, 'bca' => (int) 21, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 11, 'car' => (int) 9, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 8, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 5, 'fan' => (int) 16, 'fve' => (int) 6, 'gma' => (int) 11, 'ghi' => (int) 19, 'gra' => (int) 9, 'vvi' => (int) 7, 'han' => (int) 17, 'cav' => (int) 5, 'hma' => (int) 2, 'vpl' => (int) 2, 'sun' => (int) 7, 'lal' => (int) 9, 'lja' => (int) 5, 'lonja' => (int) 9, 'lsa' => (int) 5, 'mes' => (int) 8, 'mpo' => (int) 3, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 10, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 15, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 9, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 9, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 6, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 5, 'spa' => (int) 10, 'tar' => (int) 10, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 11, 'tpr' => (int) 11, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 4, 'vmu' => (int) 7, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb301640' $species_info = array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ) $local_species = 'aag' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000856', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p00010' => 'bna', 'A03p04160' => 'bna', 'A03p17160' => 'bna', 'A04p23370' => 'bna', 'A05p14860' => 'bna', 'A08p37020' => 'bna', 'A09p08050' => 'bna', 'A09p66800' => 'bna', 'A09p67940' => 'bna', 'A10p02680' => 'bna', 'A10p05320' => 'bna', 'Aa31LG1G20560' => 'aar', 'Aa31LG1G20610' => 'aar', 'Aa31LG1G7810' => 'aar', 'Aa31LG5G3590' => 'aar', 'Aa31LG5G6140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3819' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4683' => 'aag', 'Actinidia04480' => 'ach', 'Actinidia05466' => 'ach', 'Actinidia08445' => 'ach', 'Actinidia21170' => 'ach', 'Actinidia24812' => 'ach', 'Actinidia24951' => 'ach', 'Actinidia40088' => 'ach', 'Ah.02g111660' => 'amhyb', 'Ah.11g048900' => 'amhyb', 'Ah.11g049910' => 'amhyb', 'AL1G13870' => 'aly', 'AL1G13880' => 'aly', 'AL1G16760' => 'aly', 'AL390U10020' => 'aly', 'AL4G25520' => 'aly', 'AL6G19890' => 'aly', 'AL6G19900' => 'aly', 'AL6G19910' => 'aly', 'AL8G40100' => 'aly', 'Aqoxy2G03562' => 'aox', 'Aqoxy5G00316' => 'aox', 'Aqoxy5G00926' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1628KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1H403S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2FU6SJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.882I6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8YRY2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YN1SN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AF70II' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZA8L1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F916KL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHRD8H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KTZ8QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S22EMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8M29T' => 'arhy', 'AT1G04270' => 'ath', 'AT1G04280' => 'ath', 'AT1G06750' => 'ath', 'AT1G33850' => 'ath', 'AT2G30630' => 'ath', 'AT5G09490' => 'ath', 'AT5G09500' => 'ath', 'AT5G09510' => 'ath', 'AT5G43640' => 'ath', 'AT5G63070' => 'ath', 'ATR0605G315' => 'atr', 'Atru.chr11.175' => 'acertr', 'Atru.chr11.653' => 'acertr', 'Atru.chr3.1616' => 'acertr', 'Atru.chr4.2230' => 'acertr', 'Atru.chr4.2232' => 'acertr', 'Atru.chr5.1598' => 'acertr', 'Atru.chr5.1600' => 'acertr', 'Atru.chr5.2188' => 'acertr', 'AUR62008326' => 'cqu', 'AUR62011922' => 'cqu', 'AUR62011924' => 'cqu', 'AUR62021771' => 'cqu', 'AUR62032237' => 'cqu', 'AUR62032240' => 'cqu', 'BcaB01g05572' => 'bca', 'BcaB02g10337' => 'bca', 'BcaB04g19944' => 'bca', 'BcaB05g21548' => 'bca', 'BcaB05g21549' => 'bca', 'BcaB05g23227' => 'bca', 'BcaB06g26256' => 'bca', 'BcaB06g26257' => 'bca', 'BcaB06g28379' => 'bca', 'BcaC02g11159' => 'bca', 'BcaC03g13258' => 'bca', 'BcaC03g13259' => 'bca', 'BcaC05g24456' => 'bca', 'BcaC05g24457' => 'bca', 'BcaC07g36922' => 'bca', 'BcaC07g36923' => 'bca', 'BcaC07g42050' => 'bca', 'BcaC07g42176' => 'bca', 'BcaC07g42195' => 'bca', 'BcaC07g42196' => 'bca', 'BcaNung06674' => 'bca', 'BolC2t06351H' => 'bol', 'BolC2t06352H' => 'bol', 'BolC3t12993H' => 'bol', 'BolC4t23525H' => 'bol', 'BolC4t27475H' => 'bol', 'BolC5t29025H' => 'bol', 'BolC5t29026H' => 'bol', 'BolC8t46898H' => 'bol', 'BolC8t46899H' => 'bol', 'BolC8t52630H' => 'bol', 'BolC8t52765H' => 'bol', 'BolC9t53824H' => 'bol', 'BraA03t09760Z' => 'bra', 'BraA03t10990Z' => 'bra', 'BraA05t20413Z' => 'bra', 'BraA08t35602Z' => 'bra', 'BraA09t36458Z' => 'bra', 'BraA09t42018Z' => 'bra', 'BraA09t42129Z' => 'bra', 'BraA10t42536Z' => 'bra', 'BraA10t42537Z' => 'bra', 'C01p10690' => 'bna', 'C02p03890' => 'bna', 'C02p03900' => 'bna', 'C03p04620' => 'bna', 'C04p19870' => 'bna', 'C04p59670' => 'bna', 'C05p02460' => 'bna', 'C05p02470' => 'bna', 'C08p00980' => 'bna', 'C08p00990' => 'bna', 'C08p51030' => 'bna', 'C08p52360' => 'bna', 'C09p09120' => 'bna', 'CAN.G19.15' => 'can', 'CAN.G251.10' => 'can', 'CAN.G251.9' => 'can', 'CAN.G398.24' => 'can', 'CAN.G410.32' => 'can', 'CAN.G881.2' => 'can', 'CANSAT01G3025' => 'cansat', 'CANSAT78G1211' => 'cansat', 'CANSAT78G1218' => 'cansat', 'CANSAT78G1521' => 'cansat', 'CANSAT78G1670' => 'cansat', 'CARHR003600' => 'chi', 'CARHR003610' => 'chi', 'CARHR006290' => 'chi', 'CARHR006430' => 'chi', 'CARHR124110' => 'chi', 'CARHR203870' => 'chi', 'CARHR203880' => 'chi', 'CARHR203890' => 'chi', 'CARHR276880' => 'chi', 'Carub.0001s0346' => 'cru', 'Carub.0001s0347' => 'cru', 'Carub.0001s0607' => 'cru', 'Carub.0003s2768' => 'cru', 'Carub.0003s2769' => 'cru', 'Carub.0004s1178' => 'cru', 'Carub.0006s0806' => 'cru', 'Carub.0006s0807' => 'cru', 'Carub.0006s0808' => 'cru', 'Carub.0008s0501' => 'cru', 'Carub.0008s2379' => 'cru', 'Ca_08655_v3' => 'car', 'Ca_08922_v3' => 'car', 'Ca_08923_v3' => 'car', 'Ca_09119_v3' => 'car', 'Ca_09703_v3' => 'car', 'Ca_09705_v3' => 'car', 'Ca_09835_v3' => 'car', 'Ca_26403_v3' => 'car', 'Ca_30719_v3' => 'car', 'CBR_g17958' => 'cbr', 'CBR_g40516' => 'cbr', 'Cc00_g05350' => 'ccan', 'Cc01_g18690' => 'ccan', 'Cc03_g04830' => 'ccan', 'Cc03_g04850' => 'ccan', 'CDE02G4469' => 'cde', 'CDE06G0883' => 'cde', 'CDE06G1295' => 'cde', 'CDE06G1390' => 'cde', 'CDE07G0584' => 'cde', 'CDE07G1084' => 'cde', 'CDE08G1259' => 'cde', 'Cfa002341' => 'cfa', 'Cfa024337' => 'cfa', 'Ciclev10004749m.g' => 'ccl', 'Ciclev10006127m.g' => 'ccl', 'Ciclev10019720m.g' => 'ccl', 'Ciclev10022652m.g' => 'ccl', 'CiPaw.01G190400' => 'cil', 'CiPaw.01G190500' => 'cil', 'CiPaw.02G116400' => 'cil', 'CiPaw.02G116500' => 'cil', 'CiPaw.04G183000' => 'cil', 'CiPaw.04G183300' => 'cil', 'ClCG05G004610' => 'cla', 'ClCG05G004620' => 'cla', 'ClCG06G006730' => 'cla', 'ClCG06G006740' => 'cla', 'ClCG11G003690' => 'cla', 'COL.COLO4_08276' => 'col', 'COL.COLO4_08277' => 'col', 'COL.COLO4_15787' => 'col', 'COL.COLO4_15789' => 'col', 'Cpa.g.c44815' => 'cpa', 'Cpa.g.sc52.144' => 'cpa', 'Cpa.g.sc58.46' => 'cpa', 'Cpa.g.sc58.47' => 'cpa', 'Cre08.g360900' => 'cre', 'CsaV3_2G013030' => 'csa', 'CsaV3_2G013050' => 'csa', 'CsaV3_2G015620' => 'csa', 'CsaV3_3G012590' => 'csa', 'CsaV3_3G012600' => 'csa', 'CSS0001641' => 'camsi', 'CSS0008310' => 'camsi', 'CSS0013011' => 'camsi', 'CSS0017147' => 'camsi', 'CSS0022970' => 'camsi', 'CSS0025655' => 'camsi', 'CSS0028665' => 'camsi', 'CSS0029117' => 'camsi', 'CSS0032024' => 'camsi', 'CSS0039681' => 'camsi', 'CSS0046516' => 'camsi', 'CSS0050307' => 'camsi', 'DCAR_005871' => 'dca', 'DCAR_007342' => 'dca', 'DCAR_024228' => 'dca', 'DCAR_027277' => 'dca', 'DCAR_030718' => 'dca', 'Dinv20287' => 'din', 'Dinv22461' => 'din', 'Dinv22464' => 'din', 'Dinv29912' => 'din', 'Dinv29913' => 'din', 'Dinv34580' => 'din', 'Dinv34582' => 'din', 'Dinv44632' => 'din', 'Duzib052G0266' => 'dzi', 'Duzib133G0907' => 'dzi', 'Duzib133G1034' => 'dzi', 'Duzib138G0207' => 'dzi', 'Duzib138G0491' => 'dzi', 'Duzib151G0812' => 'dzi', 'Duzib151G1166' => 'dzi', 'Duzib168G0192' => 'dzi', 'Duzib211G0077' => 'dzi', 'Duzib212G0429' => 'dzi', 'Duzib212G0472' => 'dzi', 'ECA233G2617' => 'eca', 'ECA236G4188' => 'eca', 'ECA240G0936' => 'eca', 'ECA240G1129' => 'eca', 'ECA247G0623' => 'eca', 'EL10Ac5g10451' => 'bvu', 'EL10Ac5g10453' => 'bvu', 'EL10Ac5g10894' => 'bvu', 'Eucgr.H00192' => 'egr', 'Eucgr.H00193' => 'egr', 'Eucgr.H00194' => 'egr', 'Eucgr.J01562' => 'egr', 'Eucgr.K03301' => 'egr', 'FAN02G0632' => 'fan', 'FAN05G5378' => 'fan', 'FAN09G3247' => 'fan', 'FAN12G0435' => 'fan', 'FAN12G2426' => 'fan', 'FAN14G1707' => 'fan', 'FAN14G4725' => 'fan', 'FAN15G2071' => 'fan', 'FAN17G3065' => 'fan', 'FAN19G1376' => 'fan', 'FAN20G0354' => 'fan', 'FAN20G2429' => 'fan', 'FAN20G2658' => 'fan', 'FAN24G2343' => 'fan', 'FAN27G2362' => 'fan', 'FAN28G1765' => 'fan', 'FvH4_1g16020' => 'fve', 'FvH4_2g04890' => 'fve', 'FvH4_2g22270' => 'fve', 'FvH4_4g02630' => 'fve', 'FvH4_4g02640' => 'fve', 'FvH4_6g02650' => 'fve', 'Glyma.02G140600' => 'gma', 'Glyma.03G159900' => 'gma', 'Glyma.05G234800' => 'gma', 'Glyma.07G269600' => 'gma', 'Glyma.08G042300' => 'gma', 'Glyma.10G033500' => 'gma', 'Glyma.10G185200' => 'gma', 'Glyma.17G004300' => 'gma', 'Glyma.19G161900' => 'gma', 'Glyma.20G205100' => 'gma', 'Glyma.20G205200' => 'gma', 'Gohir.A01G139101' => 'ghi', 'Gohir.A02G035600' => 'ghi', 'Gohir.A02G117901' => 'ghi', 'Gohir.A07G210100' => 'ghi', 'Gohir.A07G210200' => 'ghi', 'Gohir.A08G061100' => 'ghi', 'Gohir.A09G223000' => 'ghi', 'Gohir.A09G223100' => 'ghi', 'Gohir.A10G113900' => 'ghi', 'Gohir.A10G114000' => 'ghi', 'Gohir.D02G042300' => 'ghi', 'Gohir.D07G216100' => 'ghi', 'Gohir.D07G216200' => 'ghi', 'Gohir.D08G070400' => 'ghi', 'Gohir.D09G225000' => 'ghi', 'Gohir.D09G225100' => 'ghi', 'Gohir.D10G152300' => 'ghi', 'Gohir.D10G153200' => 'ghi', 'Gohir.D11G133701' => 'ghi', 'Gorai.004G074100' => 'gra', 'Gorai.005G046800' => 'gra', 'Gorai.006G246500' => 'gra', 'Gorai.006G246600' => 'gra', 'Gorai.007G142900' => 'gra', 'Gorai.011G171000' => 'gra', 'Gorai.011G171100' => 'gra', 'Gorai.013G104300' => 'gra', 'Gorai.013G104400' => 'gra', 'GSVIVG01000754001' => 'vvi', 'GSVIVG01000756001' => 'vvi', 'GSVIVG01010903001' => 'vvi', 'GSVIVG01017623001' => 'vvi', 'GSVIVG01018113001' => 'vvi', 'GSVIVG01018116001' => 'vvi', 'GSVIVG01018118001' => 'vvi', 'HanXRQChr03g0076211' => 'han', 'HanXRQChr03g0092431' => 'han', 'HanXRQChr03g0092441' => 'han', 'HanXRQChr03g0092591' => 'han', 'HanXRQChr03g0092671' => 'han', 'HanXRQChr03g0092681' => 'han', 'HanXRQChr03g0092691' => 'han', 'HanXRQChr03g0092701' => 'han', 'HanXRQChr03g0092721' => 'han', 'HanXRQChr03g0092731' => 'han', 'HanXRQChr04g0113681' => 'han', 'HanXRQChr10g0281371' => 'han', 'HanXRQChr11g0337141' => 'han', 'HanXRQChr13g0424521' => 'han', 'HanXRQChr13g0424531' => 'han', 'HanXRQChr13g0424541' => 'han', 'HanXRQChr16g0498221' => 'han', 'Haze_04377' => 'cav', 'Haze_11298' => 'cav', 'Haze_24547' => 'cav', 'Haze_24550' => 'cav', 'Haze_26587' => 'cav', 'Hma1.2p1_0650F.1_g195410' => 'hma', 'Hma1.2p1_0893F.1_g233470' => 'hma', 'HPP92_006508' => 'vpl', 'HPP92_024780' => 'vpl', 'Hund02688' => 'sun', 'Hund09380' => 'sun', 'Hund09381' => 'sun', 'Hund09832' => 'sun', 'Hund09833' => 'sun', 'Hund11351' => 'sun', 'Hund11513' => 'sun', 'Lalb_Chr06g0162591' => 'lal', 'Lalb_Chr06g0162601' => 'lal', 'Lalb_Chr06g0169321' => 'lal', 'Lalb_Chr09g0330951' => 'lal', 'Lalb_Chr16g0387631' => 'lal', 'Lalb_Chr21g0306241' => 'lal', 'Lalb_Chr25g0290051' => 'lal', 'Lalb_Chr25g0290061' => 'lal', 'Lalb_Chr25g0290071' => 'lal', 'Lj1g0003876' => 'lja', 'Lj1P1207T36' => 'lonja', 'Lj2C1156G12' => 'lonja', 'Lj3A793G39' => 'lonja', 'Lj3C580G2' => 'lonja', 'Lj3C780G2' => 'lonja', 'Lj3C780T4' => 'lonja', 'Lj3C793G9' => 'lonja', 'Lj4g0012960' => 'lja', 'Lj5g0021252' => 'lja', 'Lj5g0021484' => 'lja', 'Lj5g0024528' => 'lja', 'Lj6A399T12' => 'lonja', 'Lj6A656G65' => 'lonja', 'Lsat_1_v5_gn_3_125500' => 'lsa', 'Lsat_1_v5_gn_3_125540' => 'lsa', 'Lsat_1_v5_gn_5_72701' => 'lsa', 'Lsat_1_v5_gn_8_91560' => 'lsa', 'Lsat_1_v5_gn_9_9640' => 'lsa', 'Manes.01G200600' => 'mes', 'Manes.01G200700' => 'mes', 'Manes.03G168900' => 'mes', 'Manes.03G169000' => 'mes', 'Manes.05G085801' => 'mes', 'Manes.05G086200' => 'mes', 'Manes.15G036700' => 'mes', 'Manes.15G036900' => 'mes', 'Mapoly0004s0172' => 'mpo', 'Mapoly0023s0001' => 'mpo', 'Mapoly0142s0012' => 'mpo', 'MBI01_g32854_MAGBIO' => 'mbi', 'MBI11_g24427_MAGBIO' => 'mbi', 'MBI11_g47319_MAGBIO' => 'mbi', 'MCO01G433' => 'mco', 'MD00G1187800' => 'mdo', 'MD04G1226500' => 'mdo', 'MD05G1203900' => 'mdo', 'MD10G1191100' => 'mdo', 'MD12G1243500' => 'mdo', 'MD13G1207000' => 'mdo', 'MD13G1207100' => 'mdo', 'MD16G1208600' => 'mdo', 'Medtr1g050352' => 'mtr', 'Medtr1g070385' => 'mtr', 'Medtr1g070450' => 'mtr', 'Medtr1g075200' => 'mtr', 'Medtr1g075250' => 'mtr', 'Medtr1g075260' => 'mtr', 'Medtr1g475250' => 'mtr', 'Medtr4g075450' => 'mtr', 'Medtr7g096300' => 'mtr', 'Medtr8g105110' => 'mtr', 'MELO3C006470.2' => 'cme', 'MELO3C006471.2' => 'cme', 'MELO3C020772.2' => 'cme', 'MELO3C026780.2' => 'cme', 'MELO3C026781.2' => 'cme', 'Migut.D00390' => 'egut', 'Migut.G00435' => 'egut', 'Migut.G00436' => 'egut', 'Migut.G00718' => 'egut', 'MSTRG.21891' => 'ama', 'MSTRG.26910' => 'ama', 'MSTRG.4099' => 'ama', 'MSTRG.9925' => 'ama', 'Nitab4.5_0000165g0010' => 'nta', 'Nitab4.5_0000209g0180' => 'nta', 'Nitab4.5_0000244g0440' => 'nta', 'Nitab4.5_0000525g0220' => 'nta', 'Nitab4.5_0001597g0020' => 'nta', 'Nitab4.5_0001878g0040' => 'nta', 'Nitab4.5_0001878g0060' => 'nta', 'Nitab4.5_0002838g0100' => 'nta', 'Nitab4.5_0002838g0120' => 'nta', 'Nitab4.5_0004798g0030' => 'nta', 'Nitab4.5_0005420g0010' => 'nta', 'Nitab4.5_0005507g0010' => 'nta', 'Nitab4.5_0005574g0020' => 'nta', 'Nitab4.5_0005838g0010' => 'nta', 'Nitab4.5_0010580g0020' => 'nta', 'Nn1g02599' => 'nnu', 'Nn1g02608' => 'nnu', 'Nn3g17742' => 'nnu', 'Nn3g19534' => 'nnu', 'Nn3g19535' => 'nnu', 'Oeu008790.1' => 'oeu', 'Oeu008792.1' => 'oeu', 'Oeu032590.1' => 'oeu', 'Oeu035349.1' => 'oeu', 'Oeu049791.1' => 'oeu', 'Os01g0774500' => 'osa', 'Os03g0628800' => 'osa', 'Os03g0798600' => 'osa', 'Os05g0508800' => 'osa', 'Peaxi162Scf00036g02018' => 'pax', 'Peaxi162Scf00578g00032' => 'pax', 'Peaxi162Scf00578g00317' => 'pax', 'Peaxi162Scf00785g00114' => 'pax', 'Peaxi162Scf00813g00119' => 'pax', 'Peaxi162Scf00906g00227' => 'pax', 'PGR004G0875' => 'pgr', 'PGR004G2424' => 'pgr', 'PGR031G1239' => 'pgr', 'PGR031G2474' => 'pgr', 'PGR044G0423' => 'pgr', 'PGSC0003DMG400001128' => 'stu', 'PGSC0003DMG400007336' => 'stu', 'PGSC0003DMG400016318' => 'stu', 'PGSC0003DMG400016319' => 'stu', 'PGSC0003DMG400018074' => 'stu', 'Phvul.001G157700' => 'pvu', 'Phvul.002G148550' => 'pvu', 'Phvul.002G320200' => 'pvu', 'Phvul.003G089200' => 'pvu', 'Phvul.007G126000' => 'pvu', 'Phvul.007G126100' => 'pvu', 'Phvul.007G178000' => 'pvu', 'Phvul.007G178200' => 'pvu', 'Potri.002G043000' => 'ptr', 'Potri.002G043200' => 'ptr', 'Potri.003G123750' => 'ptr', 'Potri.005G055401' => 'ptr', 'Potri.005G219700' => 'ptr', 'Potri.005G220000' => 'ptr', 'Potri.008G161901' => 'ptr', 'Potri.008G162000' => 'ptr', 'Potri.008G162400' => 'ptr', 'Potri.010G076900' => 'ptr', 'Pp3c12_9180' => 'ppa', 'Pp3c13_19770' => 'ppa', 'Pp3c14_22950' => 'ppa', 'Pp3c16_12160' => 'ppa', 'Pp3c27_7820' => 'ppa', 'Pp3c2_3490' => 'ppa', 'Pp3c3_23700' => 'ppa', 'Pp3c3_36520' => 'ppa', 'Pp3c4_15250' => 'ppa', 'PRCOL_00007002' => 'pco', 'Prupe.1G030600' => 'ppe', 'Prupe.1G030700' => 'ppe', 'Prupe.6G345200' => 'ppe', 'Prupe.8G230300' => 'ppe', 'Prupe.8G230500' => 'ppe', 'Psat3g059600' => 'psa', 'Psat5g200920' => 'psa', 'Psat6g056440' => 'psa', 'Psat6g057360' => 'psa', 'Psat6g134120' => 'psa', 'Psat6g134160' => 'psa', 'Psat7g008640' => 'psa', 'Psat7g185240' => 'psa', 'PSO017G1330' => 'pso', 'PSO063G6097' => 'pso', 'PSO170G0835' => 'pso', 'PSO170G2499' => 'pso', 'PSO210G5058' => 'pso', 'PSO210G6154' => 'pso', 'PSO585G0031' => 'pso', 'PSO832G0264' => 'pso', 'PSO832G4288' => 'pso', 'QL03p027355' => 'qlo', 'QL03p027430' => 'qlo', 'QL04p081380' => 'qlo', 'QL06p015642' => 'qlo', 'QL06p015650' => 'qlo', 'QL06p015686' => 'qlo', 'QL12p042927' => 'qlo', 'QL93p1863_0035' => 'qlo', 'RcHm_v2.0_Chr3g0450581' => 'rch', 'RcHm_v2.0_Chr4g0390371' => 'rch', 'RcHm_v2.0_Chr4g0390381' => 'rch', 'RcHm_v2.0_Chr4g0390491' => 'rch', 'RcHm_v2.0_Chr4g0390501' => 'rch', 'RcHm_v2.0_Chr6g0289231' => 'rch', 'Rhsim04G0190400' => 'rsi', 'Rhsim04G0190500' => 'rsi', 'Rhsim04G0190600' => 'rsi', 'Rhsim13G0031400' => 'rsi', 'Rhsim13G0165600' => 'rsi', 'RhsimUnG0114600' => 'rsi', 'RhsimUnG0114700' => 'rsi', 'Sabra02G0034800' => 'sbr', 'Sabra02G0035100' => 'sbr', 'Sabra05G0168600' => 'sbr', 'Sabra05G0168800' => 'sbr', 'Sabra08G0123700' => 'sbr', 'Sabra10G0031900' => 'sbr', 'Sabra13G0039000' => 'sbr', 'SalBow2G0782' => 'sbo', 'SalBow2G1403' => 'sbo', 'SalBow4G0074' => 'sbo', 'SalBow4G2635' => 'sbo', 'SalBow5G3010' => 'sbo', 'Sc05g0000870' => 'sci', 'Sc05g0000890' => 'sci', 'Sc13g0005000' => 'sci', 'Sc13g0005030' => 'sci', 'Sc19g0003790' => 'sci', 'Sc19g0003800' => 'sci', 'Sed0003467' => 'sed', 'Sed0009355' => 'sed', 'Sed0009894' => 'sed', 'Sed0011972' => 'sed', 'Sed0021483' => 'sed', 'Sed0021750' => 'sed', 'Sed0026279' => 'sed', 'SEGI_05312' => 'sgi', 'SEGI_10112' => 'sgi', 'SEGI_15835' => 'sgi', 'SEGI_30386' => 'sgi', 'SEGI_34122' => 'sgi', 'SEGI_35063' => 'sgi', 'SGA_v2.0_scaffold101G29794' => 'sas', 'SGA_v2.0_scaffold1G00573' => 'sas', 'SGA_v2.0_scaffold79G25637' => 'sas', 'SGA_v2.0_scaffold88G27283' => 'sas', 'SGA_v2.0_scaffold88G27285' => 'sas', 'SGA_v2.0_scaffold88G27331' => 'sas', 'SHI09937' => 'shi', 'SMO119G0302' => 'smo', 'SMO137G0231' => 'smo', 'SMO367G1151' => 'smo', 'Solyc02g082000.3' => 'sly', 'Solyc06g031670.3' => 'sly', 'Solyc06g053810.3' => 'sly', 'Solyc07g025457.1' => 'sly', 'Solyc08g059740.1' => 'sly', 'Solyc08g059750.3' => 'sly', 'Solyc09g083370.3' => 'sly', 'Solyc12g038950.3' => 'sly', 'Sopen02g026630' => 'spe', 'Sopen06g018930' => 'spe', 'Sopen06g018940' => 'spe', 'Sopen08g009460' => 'spe', 'Sopen09g032290' => 'spe', 'Sp1g03080' => 'spa', 'Sp1g03090' => 'spa', 'Sp1g05480' => 'spa', 'Sp2g07860' => 'spa', 'Sp2g08430' => 'spa', 'Sp2g08440' => 'spa', 'Sp2g26200' => 'spa', 'Sp4g13170' => 'spa', 'Sp6g33840' => 'spa', 'SpUn1204_0010' => 'spa', 'TAR365G0908' => 'tar', 'TAR381G1270' => 'tar', 'TAR381G1651' => 'tar', 'TAR625G1131' => 'tar', 'TAR633G0962' => 'tar', 'TAR633G1729' => 'tar', 'TAR633G1864' => 'tar', 'TAR636G0221' => 'tar', 'TAR636G0314' => 'tar', 'TAR636G3202' => 'tar', 'THA.LOC104800805' => 'tha', 'THA.LOC104801096' => 'tha', 'THA.LOC104801555' => 'tha', 'THA.LOC104808491' => 'tha', 'THA.LOC104808595' => 'tha', 'THA.LOC104815985' => 'tha', 'THA.LOC104822250' => 'tha', 'THA.LOC104826071' => 'tha', 'Thecc.01G265200' => 'tca', 'Thecc.01G265300' => 'tca', 'Thecc.01G265700' => 'tca', 'Thecc.03G109100' => 'tca', 'Thecc.04G245900' => 'tca', 'Thecc.04G246000' => 'tca', 'Thhalv10003334m.g' => 'esa', 'Thhalv10005508m.g' => 'esa', 'Thhalv10005643m.g' => 'esa', 'Thhalv10007316m.g' => 'esa', 'Thhalv10009006m.g' => 'esa', 'Thhalv10009309m.g' => 'esa', 'Thhalv10014917m.g' => 'esa', 'Thhalv10014919m.g' => 'esa', 'Thhalv10015393m.g' => 'esa', 'Thhalv10016515m.g' => 'esa', 'Thhalv10029242m.g' => 'esa', 'TPR.G16654' => 'tpr', 'TPR.G20589' => 'tpr', 'TPR.G23029' => 'tpr', 'TPR.G27731' => 'tpr', 'TPR.G28889' => 'tpr', 'TPR.G28899' => 'tpr', 'TPR.G30846' => 'tpr', 'TPR.G5452' => 'tpr', 'TPR.G5713' => 'tpr', 'TPR.G9046' => 'tpr', 'TPR.G9061' => 'tpr', 'TWI09G1075' => 'twi', 'TWI12G0806' => 'twi', 'TWI18G0108' => 'twi', 'TWI53G1361' => 'twi', 'TWI73G0185' => 'twi', 'TWI73G0427' => 'twi', 'unitig_37.g12001' => 'ugi', 'unitig_747.g21660' => 'ugi', 'unitig_748.g7232' => 'ugi', 'unitig_748.g7315' => 'ugi', 'unitig_85.g27262' => 'ugi', 'unitig_92.g28220' => 'ugi', 'vmacro02632' => 'vma', 'vmacro08410' => 'vma', 'vmacro08411' => 'vma', 'vmacro15407' => 'vma', 'VMungo0251G3619' => 'vmu', 'VMungo0720G1204' => 'vmu', 'VMungo0720G1918' => 'vmu', 'VMungo0720G2387' => 'vmu', 'VMungo0720G2961' => 'vmu', 'VMungo1215G2154' => 'vmu', 'VMungo1383G2411' => 'vmu', 'Zm00001eb051130' => 'zma', 'Zm00001eb116830' => 'zma', 'Zm00001eb116850' => 'zma', 'Zm00001eb151740' => 'zma', 'Zm00001eb292360' => 'zma', 'Zm00001eb301640' => 'zma' ), 'gf_id' => 'HOM05D000856', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000856' ), 'data_identifier' => 'HOM05D000856', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000856', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p00010' => 'bna', 'A03p04160' => 'bna', 'A03p17160' => 'bna', 'A04p23370' => 'bna', 'A05p14860' => 'bna', 'A08p37020' => 'bna', 'A09p08050' => 'bna', 'A09p66800' => 'bna', 'A09p67940' => 'bna', 'A10p02680' => 'bna', 'A10p05320' => 'bna', 'Aa31LG1G20560' => 'aar', 'Aa31LG1G20610' => 'aar', 'Aa31LG1G7810' => 'aar', 'Aa31LG5G3590' => 'aar', 'Aa31LG5G6140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3819' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4683' => 'aag', 'Actinidia04480' => 'ach', 'Actinidia05466' => 'ach', 'Actinidia08445' => 'ach', 'Actinidia21170' => 'ach', 'Actinidia24812' => 'ach', 'Actinidia24951' => 'ach', 'Actinidia40088' => 'ach', 'Ah.02g111660' => 'amhyb', 'Ah.11g048900' => 'amhyb', 'Ah.11g049910' => 'amhyb', 'AL1G13870' => 'aly', 'AL1G13880' => 'aly', 'AL1G16760' => 'aly', 'AL390U10020' => 'aly', 'AL4G25520' => 'aly', 'AL6G19890' => 'aly', 'AL6G19900' => 'aly', 'AL6G19910' => 'aly', 'AL8G40100' => 'aly', 'Aqoxy2G03562' => 'aox', 'Aqoxy5G00316' => 'aox', 'Aqoxy5G00926' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1628KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1H403S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2FU6SJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.882I6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8YRY2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YN1SN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AF70II' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZA8L1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F916KL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHRD8H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KTZ8QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S22EMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8M29T' => 'arhy', 'AT1G04270' => 'ath', 'AT1G04280' => 'ath', 'AT1G06750' => 'ath', 'AT1G33850' => 'ath', 'AT2G30630' => 'ath', 'AT5G09490' => 'ath', 'AT5G09500' => 'ath', 'AT5G09510' => 'ath', 'AT5G43640' => 'ath', 'AT5G63070' => 'ath', 'ATR0605G315' => 'atr', 'Atru.chr11.175' => 'acertr', 'Atru.chr11.653' => 'acertr', 'Atru.chr3.1616' => 'acertr', 'Atru.chr4.2230' => 'acertr', 'Atru.chr4.2232' => 'acertr', 'Atru.chr5.1598' => 'acertr', 'Atru.chr5.1600' => 'acertr', 'Atru.chr5.2188' => 'acertr', 'AUR62008326' => 'cqu', 'AUR62011922' => 'cqu', 'AUR62011924' => 'cqu', 'AUR62021771' => 'cqu', 'AUR62032237' => 'cqu', 'AUR62032240' => 'cqu', 'BcaB01g05572' => 'bca', 'BcaB02g10337' => 'bca', 'BcaB04g19944' => 'bca', 'BcaB05g21548' => 'bca', 'BcaB05g21549' => 'bca', 'BcaB05g23227' => 'bca', 'BcaB06g26256' => 'bca', 'BcaB06g26257' => 'bca', 'BcaB06g28379' => 'bca', 'BcaC02g11159' => 'bca', 'BcaC03g13258' => 'bca', 'BcaC03g13259' => 'bca', 'BcaC05g24456' => 'bca', 'BcaC05g24457' => 'bca', 'BcaC07g36922' => 'bca', 'BcaC07g36923' => 'bca', 'BcaC07g42050' => 'bca', 'BcaC07g42176' => 'bca', 'BcaC07g42195' => 'bca', 'BcaC07g42196' => 'bca', 'BcaNung06674' => 'bca', 'BolC2t06351H' => 'bol', 'BolC2t06352H' => 'bol', 'BolC3t12993H' => 'bol', 'BolC4t23525H' => 'bol', 'BolC4t27475H' => 'bol', 'BolC5t29025H' => 'bol', 'BolC5t29026H' => 'bol', 'BolC8t46898H' => 'bol', 'BolC8t46899H' => 'bol', 'BolC8t52630H' => 'bol', 'BolC8t52765H' => 'bol', 'BolC9t53824H' => 'bol', 'BraA03t09760Z' => 'bra', 'BraA03t10990Z' => 'bra', 'BraA05t20413Z' => 'bra', 'BraA08t35602Z' => 'bra', 'BraA09t36458Z' => 'bra', 'BraA09t42018Z' => 'bra', 'BraA09t42129Z' => 'bra', 'BraA10t42536Z' => 'bra', 'BraA10t42537Z' => 'bra', 'C01p10690' => 'bna', 'C02p03890' => 'bna', 'C02p03900' => 'bna', 'C03p04620' => 'bna', 'C04p19870' => 'bna', 'C04p59670' => 'bna', 'C05p02460' => 'bna', 'C05p02470' => 'bna', 'C08p00980' => 'bna', 'C08p00990' => 'bna', 'C08p51030' => 'bna', 'C08p52360' => 'bna', 'C09p09120' => 'bna', 'CAN.G19.15' => 'can', 'CAN.G251.10' => 'can', 'CAN.G251.9' => 'can', 'CAN.G398.24' => 'can', 'CAN.G410.32' => 'can', 'CAN.G881.2' => 'can', 'CANSAT01G3025' => 'cansat', 'CANSAT78G1211' => 'cansat', 'CANSAT78G1218' => 'cansat', 'CANSAT78G1521' => 'cansat', 'CANSAT78G1670' => 'cansat', 'CARHR003600' => 'chi', 'CARHR003610' => 'chi', 'CARHR006290' => 'chi', 'CARHR006430' => 'chi', 'CARHR124110' => 'chi', 'CARHR203870' => 'chi', 'CARHR203880' => 'chi', 'CARHR203890' => 'chi', 'CARHR276880' => 'chi', 'Carub.0001s0346' => 'cru', 'Carub.0001s0347' => 'cru', 'Carub.0001s0607' => 'cru', 'Carub.0003s2768' => 'cru', 'Carub.0003s2769' => 'cru', 'Carub.0004s1178' => 'cru', 'Carub.0006s0806' => 'cru', 'Carub.0006s0807' => 'cru', 'Carub.0006s0808' => 'cru', 'Carub.0008s0501' => 'cru', 'Carub.0008s2379' => 'cru', 'Ca_08655_v3' => 'car', 'Ca_08922_v3' => 'car', 'Ca_08923_v3' => 'car', 'Ca_09119_v3' => 'car', 'Ca_09703_v3' => 'car', 'Ca_09705_v3' => 'car', 'Ca_09835_v3' => 'car', 'Ca_26403_v3' => 'car', 'Ca_30719_v3' => 'car', 'CBR_g17958' => 'cbr', 'CBR_g40516' => 'cbr', 'Cc00_g05350' => 'ccan', 'Cc01_g18690' => 'ccan', 'Cc03_g04830' => 'ccan', 'Cc03_g04850' => 'ccan', 'CDE02G4469' => 'cde', 'CDE06G0883' => 'cde', 'CDE06G1295' => 'cde', 'CDE06G1390' => 'cde', 'CDE07G0584' => 'cde', 'CDE07G1084' => 'cde', 'CDE08G1259' => 'cde', 'Cfa002341' => 'cfa', 'Cfa024337' => 'cfa', 'Ciclev10004749m.g' => 'ccl', 'Ciclev10006127m.g' => 'ccl', 'Ciclev10019720m.g' => 'ccl', 'Ciclev10022652m.g' => 'ccl', 'CiPaw.01G190400' => 'cil', 'CiPaw.01G190500' => 'cil', 'CiPaw.02G116400' => 'cil', 'CiPaw.02G116500' => 'cil', 'CiPaw.04G183000' => 'cil', 'CiPaw.04G183300' => 'cil', 'ClCG05G004610' => 'cla', 'ClCG05G004620' => 'cla', 'ClCG06G006730' => 'cla', 'ClCG06G006740' => 'cla', 'ClCG11G003690' => 'cla', 'COL.COLO4_08276' => 'col', 'COL.COLO4_08277' => 'col', 'COL.COLO4_15787' => 'col', 'COL.COLO4_15789' => 'col', 'Cpa.g.c44815' => 'cpa', 'Cpa.g.sc52.144' => 'cpa', 'Cpa.g.sc58.46' => 'cpa', 'Cpa.g.sc58.47' => 'cpa', 'Cre08.g360900' => 'cre', 'CsaV3_2G013030' => 'csa', 'CsaV3_2G013050' => 'csa', 'CsaV3_2G015620' => 'csa', 'CsaV3_3G012590' => 'csa', 'CsaV3_3G012600' => 'csa', 'CSS0001641' => 'camsi', 'CSS0008310' => 'camsi', 'CSS0013011' => 'camsi', 'CSS0017147' => 'camsi', 'CSS0022970' => 'camsi', 'CSS0025655' => 'camsi', 'CSS0028665' => 'camsi', 'CSS0029117' => 'camsi', 'CSS0032024' => 'camsi', 'CSS0039681' => 'camsi', 'CSS0046516' => 'camsi', 'CSS0050307' => 'camsi', 'DCAR_005871' => 'dca', 'DCAR_007342' => 'dca', 'DCAR_024228' => 'dca', 'DCAR_027277' => 'dca', 'DCAR_030718' => 'dca', 'Dinv20287' => 'din', 'Dinv22461' => 'din', 'Dinv22464' => 'din', 'Dinv29912' => 'din', 'Dinv29913' => 'din', 'Dinv34580' => 'din', 'Dinv34582' => 'din', 'Dinv44632' => 'din', 'Duzib052G0266' => 'dzi', 'Duzib133G0907' => 'dzi', 'Duzib133G1034' => 'dzi', 'Duzib138G0207' => 'dzi', 'Duzib138G0491' => 'dzi', 'Duzib151G0812' => 'dzi', 'Duzib151G1166' => 'dzi', 'Duzib168G0192' => 'dzi', 'Duzib211G0077' => 'dzi', 'Duzib212G0429' => 'dzi', 'Duzib212G0472' => 'dzi', 'ECA233G2617' => 'eca', 'ECA236G4188' => 'eca', 'ECA240G0936' => 'eca', 'ECA240G1129' => 'eca', 'ECA247G0623' => 'eca', 'EL10Ac5g10451' => 'bvu', 'EL10Ac5g10453' => 'bvu', 'EL10Ac5g10894' => 'bvu', 'Eucgr.H00192' => 'egr', 'Eucgr.H00193' => 'egr', 'Eucgr.H00194' => 'egr', 'Eucgr.J01562' => 'egr', 'Eucgr.K03301' => 'egr', 'FAN02G0632' => 'fan', 'FAN05G5378' => 'fan', 'FAN09G3247' => 'fan', 'FAN12G0435' => 'fan', 'FAN12G2426' => 'fan', 'FAN14G1707' => 'fan', 'FAN14G4725' => 'fan', 'FAN15G2071' => 'fan', 'FAN17G3065' => 'fan', 'FAN19G1376' => 'fan', 'FAN20G0354' => 'fan', 'FAN20G2429' => 'fan', 'FAN20G2658' => 'fan', 'FAN24G2343' => 'fan', 'FAN27G2362' => 'fan', 'FAN28G1765' => 'fan', 'FvH4_1g16020' => 'fve', 'FvH4_2g04890' => 'fve', 'FvH4_2g22270' => 'fve', 'FvH4_4g02630' => 'fve', 'FvH4_4g02640' => 'fve', 'FvH4_6g02650' => 'fve', 'Glyma.02G140600' => 'gma', 'Glyma.03G159900' => 'gma', 'Glyma.05G234800' => 'gma', 'Glyma.07G269600' => 'gma', 'Glyma.08G042300' => 'gma', 'Glyma.10G033500' => 'gma', 'Glyma.10G185200' => 'gma', 'Glyma.17G004300' => 'gma', 'Glyma.19G161900' => 'gma', 'Glyma.20G205100' => 'gma', 'Glyma.20G205200' => 'gma', 'Gohir.A01G139101' => 'ghi', 'Gohir.A02G035600' => 'ghi', 'Gohir.A02G117901' => 'ghi', 'Gohir.A07G210100' => 'ghi', 'Gohir.A07G210200' => 'ghi', 'Gohir.A08G061100' => 'ghi', 'Gohir.A09G223000' => 'ghi', 'Gohir.A09G223100' => 'ghi', 'Gohir.A10G113900' => 'ghi', 'Gohir.A10G114000' => 'ghi', 'Gohir.D02G042300' => 'ghi', 'Gohir.D07G216100' => 'ghi', 'Gohir.D07G216200' => 'ghi', 'Gohir.D08G070400' => 'ghi', 'Gohir.D09G225000' => 'ghi', 'Gohir.D09G225100' => 'ghi', 'Gohir.D10G152300' => 'ghi', 'Gohir.D10G153200' => 'ghi', 'Gohir.D11G133701' => 'ghi', 'Gorai.004G074100' => 'gra', 'Gorai.005G046800' => 'gra', 'Gorai.006G246500' => 'gra', 'Gorai.006G246600' => 'gra', 'Gorai.007G142900' => 'gra', 'Gorai.011G171000' => 'gra', 'Gorai.011G171100' => 'gra', 'Gorai.013G104300' => 'gra', 'Gorai.013G104400' => 'gra', 'GSVIVG01000754001' => 'vvi', 'GSVIVG01000756001' => 'vvi', 'GSVIVG01010903001' => 'vvi', 'GSVIVG01017623001' => 'vvi', 'GSVIVG01018113001' => 'vvi', 'GSVIVG01018116001' => 'vvi', 'GSVIVG01018118001' => 'vvi', 'HanXRQChr03g0076211' => 'han', 'HanXRQChr03g0092431' => 'han', 'HanXRQChr03g0092441' => 'han', 'HanXRQChr03g0092591' => 'han', 'HanXRQChr03g0092671' => 'han', 'HanXRQChr03g0092681' => 'han', 'HanXRQChr03g0092691' => 'han', 'HanXRQChr03g0092701' => 'han', 'HanXRQChr03g0092721' => 'han', 'HanXRQChr03g0092731' => 'han', 'HanXRQChr04g0113681' => 'han', 'HanXRQChr10g0281371' => 'han', 'HanXRQChr11g0337141' => 'han', 'HanXRQChr13g0424521' => 'han', 'HanXRQChr13g0424531' => 'han', 'HanXRQChr13g0424541' => 'han', 'HanXRQChr16g0498221' => 'han', 'Haze_04377' => 'cav', 'Haze_11298' => 'cav', 'Haze_24547' => 'cav', 'Haze_24550' => 'cav', 'Haze_26587' => 'cav', 'Hma1.2p1_0650F.1_g195410' => 'hma', 'Hma1.2p1_0893F.1_g233470' => 'hma', 'HPP92_006508' => 'vpl', 'HPP92_024780' => 'vpl', 'Hund02688' => 'sun', 'Hund09380' => 'sun', 'Hund09381' => 'sun', 'Hund09832' => 'sun', 'Hund09833' => 'sun', 'Hund11351' => 'sun', 'Hund11513' => 'sun', 'Lalb_Chr06g0162591' => 'lal', 'Lalb_Chr06g0162601' => 'lal', 'Lalb_Chr06g0169321' => 'lal', 'Lalb_Chr09g0330951' => 'lal', 'Lalb_Chr16g0387631' => 'lal', 'Lalb_Chr21g0306241' => 'lal', 'Lalb_Chr25g0290051' => 'lal', 'Lalb_Chr25g0290061' => 'lal', 'Lalb_Chr25g0290071' => 'lal', 'Lj1g0003876' => 'lja', 'Lj1P1207T36' => 'lonja', 'Lj2C1156G12' => 'lonja', 'Lj3A793G39' => 'lonja', 'Lj3C580G2' => 'lonja', 'Lj3C780G2' => 'lonja', 'Lj3C780T4' => 'lonja', 'Lj3C793G9' => 'lonja', 'Lj4g0012960' => 'lja', 'Lj5g0021252' => 'lja', 'Lj5g0021484' => 'lja', 'Lj5g0024528' => 'lja', 'Lj6A399T12' => 'lonja', 'Lj6A656G65' => 'lonja', 'Lsat_1_v5_gn_3_125500' => 'lsa', 'Lsat_1_v5_gn_3_125540' => 'lsa', 'Lsat_1_v5_gn_5_72701' => 'lsa', 'Lsat_1_v5_gn_8_91560' => 'lsa', 'Lsat_1_v5_gn_9_9640' => 'lsa', 'Manes.01G200600' => 'mes', 'Manes.01G200700' => 'mes', 'Manes.03G168900' => 'mes', 'Manes.03G169000' => 'mes', 'Manes.05G085801' => 'mes', 'Manes.05G086200' => 'mes', 'Manes.15G036700' => 'mes', 'Manes.15G036900' => 'mes', 'Mapoly0004s0172' => 'mpo', 'Mapoly0023s0001' => 'mpo', 'Mapoly0142s0012' => 'mpo', 'MBI01_g32854_MAGBIO' => 'mbi', 'MBI11_g24427_MAGBIO' => 'mbi', 'MBI11_g47319_MAGBIO' => 'mbi', 'MCO01G433' => 'mco', 'MD00G1187800' => 'mdo', 'MD04G1226500' => 'mdo', 'MD05G1203900' => 'mdo', 'MD10G1191100' => 'mdo', 'MD12G1243500' => 'mdo', 'MD13G1207000' => 'mdo', 'MD13G1207100' => 'mdo', 'MD16G1208600' => 'mdo', 'Medtr1g050352' => 'mtr', 'Medtr1g070385' => 'mtr', 'Medtr1g070450' => 'mtr', 'Medtr1g075200' => 'mtr', 'Medtr1g075250' => 'mtr', 'Medtr1g075260' => 'mtr', 'Medtr1g475250' => 'mtr', 'Medtr4g075450' => 'mtr', 'Medtr7g096300' => 'mtr', 'Medtr8g105110' => 'mtr', 'MELO3C006470.2' => 'cme', 'MELO3C006471.2' => 'cme', 'MELO3C020772.2' => 'cme', 'MELO3C026780.2' => 'cme', 'MELO3C026781.2' => 'cme', 'Migut.D00390' => 'egut', 'Migut.G00435' => 'egut', 'Migut.G00436' => 'egut', 'Migut.G00718' => 'egut', 'MSTRG.21891' => 'ama', 'MSTRG.26910' => 'ama', 'MSTRG.4099' => 'ama', 'MSTRG.9925' => 'ama', 'Nitab4.5_0000165g0010' => 'nta', 'Nitab4.5_0000209g0180' => 'nta', 'Nitab4.5_0000244g0440' => 'nta', 'Nitab4.5_0000525g0220' => 'nta', 'Nitab4.5_0001597g0020' => 'nta', 'Nitab4.5_0001878g0040' => 'nta', 'Nitab4.5_0001878g0060' => 'nta', 'Nitab4.5_0002838g0100' => 'nta', 'Nitab4.5_0002838g0120' => 'nta', 'Nitab4.5_0004798g0030' => 'nta', 'Nitab4.5_0005420g0010' => 'nta', 'Nitab4.5_0005507g0010' => 'nta', 'Nitab4.5_0005574g0020' => 'nta', 'Nitab4.5_0005838g0010' => 'nta', 'Nitab4.5_0010580g0020' => 'nta', 'Nn1g02599' => 'nnu', 'Nn1g02608' => 'nnu', 'Nn3g17742' => 'nnu', 'Nn3g19534' => 'nnu', 'Nn3g19535' => 'nnu', 'Oeu008790.1' => 'oeu', 'Oeu008792.1' => 'oeu', 'Oeu032590.1' => 'oeu', 'Oeu035349.1' => 'oeu', 'Oeu049791.1' => 'oeu', 'Os01g0774500' => 'osa', 'Os03g0628800' => 'osa', 'Os03g0798600' => 'osa', 'Os05g0508800' => 'osa', 'Peaxi162Scf00036g02018' => 'pax', 'Peaxi162Scf00578g00032' => 'pax', 'Peaxi162Scf00578g00317' => 'pax', 'Peaxi162Scf00785g00114' => 'pax', 'Peaxi162Scf00813g00119' => 'pax', 'Peaxi162Scf00906g00227' => 'pax', 'PGR004G0875' => 'pgr', 'PGR004G2424' => 'pgr', 'PGR031G1239' => 'pgr', 'PGR031G2474' => 'pgr', 'PGR044G0423' => 'pgr', 'PGSC0003DMG400001128' => 'stu', 'PGSC0003DMG400007336' => 'stu', 'PGSC0003DMG400016318' => 'stu', 'PGSC0003DMG400016319' => 'stu', 'PGSC0003DMG400018074' => 'stu', 'Phvul.001G157700' => 'pvu', 'Phvul.002G148550' => 'pvu', 'Phvul.002G320200' => 'pvu', 'Phvul.003G089200' => 'pvu', 'Phvul.007G126000' => 'pvu', 'Phvul.007G126100' => 'pvu', 'Phvul.007G178000' => 'pvu', 'Phvul.007G178200' => 'pvu', 'Potri.002G043000' => 'ptr', 'Potri.002G043200' => 'ptr', 'Potri.003G123750' => 'ptr', 'Potri.005G055401' => 'ptr', 'Potri.005G219700' => 'ptr', 'Potri.005G220000' => 'ptr', 'Potri.008G161901' => 'ptr', 'Potri.008G162000' => 'ptr', 'Potri.008G162400' => 'ptr', 'Potri.010G076900' => 'ptr', 'Pp3c12_9180' => 'ppa', 'Pp3c13_19770' => 'ppa', 'Pp3c14_22950' => 'ppa', 'Pp3c16_12160' => 'ppa', 'Pp3c27_7820' => 'ppa', 'Pp3c2_3490' => 'ppa', 'Pp3c3_23700' => 'ppa', 'Pp3c3_36520' => 'ppa', 'Pp3c4_15250' => 'ppa', 'PRCOL_00007002' => 'pco', 'Prupe.1G030600' => 'ppe', 'Prupe.1G030700' => 'ppe', 'Prupe.6G345200' => 'ppe', 'Prupe.8G230300' => 'ppe', 'Prupe.8G230500' => 'ppe', 'Psat3g059600' => 'psa', 'Psat5g200920' => 'psa', 'Psat6g056440' => 'psa', 'Psat6g057360' => 'psa', 'Psat6g134120' => 'psa', 'Psat6g134160' => 'psa', 'Psat7g008640' => 'psa', 'Psat7g185240' => 'psa', 'PSO017G1330' => 'pso', 'PSO063G6097' => 'pso', 'PSO170G0835' => 'pso', 'PSO170G2499' => 'pso', 'PSO210G5058' => 'pso', 'PSO210G6154' => 'pso', 'PSO585G0031' => 'pso', 'PSO832G0264' => 'pso', 'PSO832G4288' => 'pso', 'QL03p027355' => 'qlo', 'QL03p027430' => 'qlo', 'QL04p081380' => 'qlo', 'QL06p015642' => 'qlo', 'QL06p015650' => 'qlo', 'QL06p015686' => 'qlo', 'QL12p042927' => 'qlo', 'QL93p1863_0035' => 'qlo', 'RcHm_v2.0_Chr3g0450581' => 'rch', 'RcHm_v2.0_Chr4g0390371' => 'rch', 'RcHm_v2.0_Chr4g0390381' => 'rch', 'RcHm_v2.0_Chr4g0390491' => 'rch', 'RcHm_v2.0_Chr4g0390501' => 'rch', 'RcHm_v2.0_Chr6g0289231' => 'rch', 'Rhsim04G0190400' => 'rsi', 'Rhsim04G0190500' => 'rsi', 'Rhsim04G0190600' => 'rsi', 'Rhsim13G0031400' => 'rsi', 'Rhsim13G0165600' => 'rsi', 'RhsimUnG0114600' => 'rsi', 'RhsimUnG0114700' => 'rsi', 'Sabra02G0034800' => 'sbr', 'Sabra02G0035100' => 'sbr', 'Sabra05G0168600' => 'sbr', 'Sabra05G0168800' => 'sbr', 'Sabra08G0123700' => 'sbr', 'Sabra10G0031900' => 'sbr', 'Sabra13G0039000' => 'sbr', 'SalBow2G0782' => 'sbo', 'SalBow2G1403' => 'sbo', 'SalBow4G0074' => 'sbo', 'SalBow4G2635' => 'sbo', 'SalBow5G3010' => 'sbo', 'Sc05g0000870' => 'sci', 'Sc05g0000890' => 'sci', 'Sc13g0005000' => 'sci', 'Sc13g0005030' => 'sci', 'Sc19g0003790' => 'sci', 'Sc19g0003800' => 'sci', 'Sed0003467' => 'sed', 'Sed0009355' => 'sed', 'Sed0009894' => 'sed', 'Sed0011972' => 'sed', 'Sed0021483' => 'sed', 'Sed0021750' => 'sed', 'Sed0026279' => 'sed', 'SEGI_05312' => 'sgi', 'SEGI_10112' => 'sgi', 'SEGI_15835' => 'sgi', 'SEGI_30386' => 'sgi', 'SEGI_34122' => 'sgi', 'SEGI_35063' => 'sgi', 'SGA_v2.0_scaffold101G29794' => 'sas', 'SGA_v2.0_scaffold1G00573' => 'sas', 'SGA_v2.0_scaffold79G25637' => 'sas', 'SGA_v2.0_scaffold88G27283' => 'sas', 'SGA_v2.0_scaffold88G27285' => 'sas', 'SGA_v2.0_scaffold88G27331' => 'sas', 'SHI09937' => 'shi', 'SMO119G0302' => 'smo', 'SMO137G0231' => 'smo', 'SMO367G1151' => 'smo', 'Solyc02g082000.3' => 'sly', 'Solyc06g031670.3' => 'sly', 'Solyc06g053810.3' => 'sly', 'Solyc07g025457.1' => 'sly', 'Solyc08g059740.1' => 'sly', 'Solyc08g059750.3' => 'sly', 'Solyc09g083370.3' => 'sly', 'Solyc12g038950.3' => 'sly', 'Sopen02g026630' => 'spe', 'Sopen06g018930' => 'spe', 'Sopen06g018940' => 'spe', 'Sopen08g009460' => 'spe', 'Sopen09g032290' => 'spe', 'Sp1g03080' => 'spa', 'Sp1g03090' => 'spa', 'Sp1g05480' => 'spa', 'Sp2g07860' => 'spa', 'Sp2g08430' => 'spa', 'Sp2g08440' => 'spa', 'Sp2g26200' => 'spa', 'Sp4g13170' => 'spa', 'Sp6g33840' => 'spa', 'SpUn1204_0010' => 'spa', 'TAR365G0908' => 'tar', 'TAR381G1270' => 'tar', 'TAR381G1651' => 'tar', 'TAR625G1131' => 'tar', 'TAR633G0962' => 'tar', 'TAR633G1729' => 'tar', 'TAR633G1864' => 'tar', 'TAR636G0221' => 'tar', 'TAR636G0314' => 'tar', 'TAR636G3202' => 'tar', 'THA.LOC104800805' => 'tha', 'THA.LOC104801096' => 'tha', 'THA.LOC104801555' => 'tha', 'THA.LOC104808491' => 'tha', 'THA.LOC104808595' => 'tha', 'THA.LOC104815985' => 'tha', 'THA.LOC104822250' => 'tha', 'THA.LOC104826071' => 'tha', 'Thecc.01G265200' => 'tca', 'Thecc.01G265300' => 'tca', 'Thecc.01G265700' => 'tca', 'Thecc.03G109100' => 'tca', 'Thecc.04G245900' => 'tca', 'Thecc.04G246000' => 'tca', 'Thhalv10003334m.g' => 'esa', 'Thhalv10005508m.g' => 'esa', 'Thhalv10005643m.g' => 'esa', 'Thhalv10007316m.g' => 'esa', 'Thhalv10009006m.g' => 'esa', 'Thhalv10009309m.g' => 'esa', 'Thhalv10014917m.g' => 'esa', 'Thhalv10014919m.g' => 'esa', 'Thhalv10015393m.g' => 'esa', 'Thhalv10016515m.g' => 'esa', 'Thhalv10029242m.g' => 'esa', 'TPR.G16654' => 'tpr', 'TPR.G20589' => 'tpr', 'TPR.G23029' => 'tpr', 'TPR.G27731' => 'tpr', 'TPR.G28889' => 'tpr', 'TPR.G28899' => 'tpr', 'TPR.G30846' => 'tpr', 'TPR.G5452' => 'tpr', 'TPR.G5713' => 'tpr', 'TPR.G9046' => 'tpr', 'TPR.G9061' => 'tpr', 'TWI09G1075' => 'twi', 'TWI12G0806' => 'twi', 'TWI18G0108' => 'twi', 'TWI53G1361' => 'twi', 'TWI73G0185' => 'twi', 'TWI73G0427' => 'twi', 'unitig_37.g12001' => 'ugi', 'unitig_747.g21660' => 'ugi', 'unitig_748.g7232' => 'ugi', 'unitig_748.g7315' => 'ugi', 'unitig_85.g27262' => 'ugi', 'unitig_92.g28220' => 'ugi', 'vmacro02632' => 'vma', 'vmacro08410' => 'vma', 'vmacro08411' => 'vma', 'vmacro15407' => 'vma', 'VMungo0251G3619' => 'vmu', 'VMungo0720G1204' => 'vmu', 'VMungo0720G1918' => 'vmu', 'VMungo0720G2387' => 'vmu', 'VMungo0720G2961' => 'vmu', 'VMungo1215G2154' => 'vmu', 'VMungo1383G2411' => 'vmu', 'Zm00001eb051130' => 'zma', 'Zm00001eb116830' => 'zma', 'Zm00001eb116850' => 'zma', 'Zm00001eb151740' => 'zma', 'Zm00001eb292360' => 'zma', 'Zm00001eb301640' => 'zma' ) $gf_id = 'HOM05D000856' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000856' ) $data_identifier = 'HOM05D000856' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 13, 'ath' => (int) 10, 'atr' => (int) 1, 'acertr' => (int) 8, 'cqu' => (int) 6, 'bca' => (int) 21, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 11, 'car' => (int) 9, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 8, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 5, 'fan' => (int) 16, 'fve' => (int) 6, 'gma' => (int) 11, 'ghi' => (int) 19, 'gra' => (int) 9, 'vvi' => (int) 7, 'han' => (int) 17, 'cav' => (int) 5, 'hma' => (int) 2, 'vpl' => (int) 2, 'sun' => (int) 7, 'lal' => (int) 9, 'lja' => (int) 5, 'lonja' => (int) 9, 'lsa' => (int) 5, 'mes' => (int) 8, 'mpo' => (int) 3, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 10, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 15, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 9, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 9, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 6, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 5, 'spa' => (int) 10, 'tar' => (int) 10, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 11, 'tpr' => (int) 11, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 4, 'vmu' => (int) 7, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb301640' $species_info = array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ) $local_species = 'aag' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000856', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p00010' => 'bna', 'A03p04160' => 'bna', 'A03p17160' => 'bna', 'A04p23370' => 'bna', 'A05p14860' => 'bna', 'A08p37020' => 'bna', 'A09p08050' => 'bna', 'A09p66800' => 'bna', 'A09p67940' => 'bna', 'A10p02680' => 'bna', 'A10p05320' => 'bna', 'Aa31LG1G20560' => 'aar', 'Aa31LG1G20610' => 'aar', 'Aa31LG1G7810' => 'aar', 'Aa31LG5G3590' => 'aar', 'Aa31LG5G6140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3819' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4683' => 'aag', 'Actinidia04480' => 'ach', 'Actinidia05466' => 'ach', 'Actinidia08445' => 'ach', 'Actinidia21170' => 'ach', 'Actinidia24812' => 'ach', 'Actinidia24951' => 'ach', 'Actinidia40088' => 'ach', 'Ah.02g111660' => 'amhyb', 'Ah.11g048900' => 'amhyb', 'Ah.11g049910' => 'amhyb', 'AL1G13870' => 'aly', 'AL1G13880' => 'aly', 'AL1G16760' => 'aly', 'AL390U10020' => 'aly', 'AL4G25520' => 'aly', 'AL6G19890' => 'aly', 'AL6G19900' => 'aly', 'AL6G19910' => 'aly', 'AL8G40100' => 'aly', 'Aqoxy2G03562' => 'aox', 'Aqoxy5G00316' => 'aox', 'Aqoxy5G00926' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1628KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1H403S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2FU6SJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.882I6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8YRY2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YN1SN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AF70II' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZA8L1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F916KL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHRD8H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KTZ8QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S22EMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8M29T' => 'arhy', 'AT1G04270' => 'ath', 'AT1G04280' => 'ath', 'AT1G06750' => 'ath', 'AT1G33850' => 'ath', 'AT2G30630' => 'ath', 'AT5G09490' => 'ath', 'AT5G09500' => 'ath', 'AT5G09510' => 'ath', 'AT5G43640' => 'ath', 'AT5G63070' => 'ath', 'ATR0605G315' => 'atr', 'Atru.chr11.175' => 'acertr', 'Atru.chr11.653' => 'acertr', 'Atru.chr3.1616' => 'acertr', 'Atru.chr4.2230' => 'acertr', 'Atru.chr4.2232' => 'acertr', 'Atru.chr5.1598' => 'acertr', 'Atru.chr5.1600' => 'acertr', 'Atru.chr5.2188' => 'acertr', 'AUR62008326' => 'cqu', 'AUR62011922' => 'cqu', 'AUR62011924' => 'cqu', 'AUR62021771' => 'cqu', 'AUR62032237' => 'cqu', 'AUR62032240' => 'cqu', 'BcaB01g05572' => 'bca', 'BcaB02g10337' => 'bca', 'BcaB04g19944' => 'bca', 'BcaB05g21548' => 'bca', 'BcaB05g21549' => 'bca', 'BcaB05g23227' => 'bca', 'BcaB06g26256' => 'bca', 'BcaB06g26257' => 'bca', 'BcaB06g28379' => 'bca', 'BcaC02g11159' => 'bca', 'BcaC03g13258' => 'bca', 'BcaC03g13259' => 'bca', 'BcaC05g24456' => 'bca', 'BcaC05g24457' => 'bca', 'BcaC07g36922' => 'bca', 'BcaC07g36923' => 'bca', 'BcaC07g42050' => 'bca', 'BcaC07g42176' => 'bca', 'BcaC07g42195' => 'bca', 'BcaC07g42196' => 'bca', 'BcaNung06674' => 'bca', 'BolC2t06351H' => 'bol', 'BolC2t06352H' => 'bol', 'BolC3t12993H' => 'bol', 'BolC4t23525H' => 'bol', 'BolC4t27475H' => 'bol', 'BolC5t29025H' => 'bol', 'BolC5t29026H' => 'bol', 'BolC8t46898H' => 'bol', 'BolC8t46899H' => 'bol', 'BolC8t52630H' => 'bol', 'BolC8t52765H' => 'bol', 'BolC9t53824H' => 'bol', 'BraA03t09760Z' => 'bra', 'BraA03t10990Z' => 'bra', 'BraA05t20413Z' => 'bra', 'BraA08t35602Z' => 'bra', 'BraA09t36458Z' => 'bra', 'BraA09t42018Z' => 'bra', 'BraA09t42129Z' => 'bra', 'BraA10t42536Z' => 'bra', 'BraA10t42537Z' => 'bra', 'C01p10690' => 'bna', 'C02p03890' => 'bna', 'C02p03900' => 'bna', 'C03p04620' => 'bna', 'C04p19870' => 'bna', 'C04p59670' => 'bna', 'C05p02460' => 'bna', 'C05p02470' => 'bna', 'C08p00980' => 'bna', 'C08p00990' => 'bna', 'C08p51030' => 'bna', 'C08p52360' => 'bna', 'C09p09120' => 'bna', 'CAN.G19.15' => 'can', 'CAN.G251.10' => 'can', 'CAN.G251.9' => 'can', 'CAN.G398.24' => 'can', 'CAN.G410.32' => 'can', 'CAN.G881.2' => 'can', 'CANSAT01G3025' => 'cansat', 'CANSAT78G1211' => 'cansat', 'CANSAT78G1218' => 'cansat', 'CANSAT78G1521' => 'cansat', 'CANSAT78G1670' => 'cansat', 'CARHR003600' => 'chi', 'CARHR003610' => 'chi', 'CARHR006290' => 'chi', 'CARHR006430' => 'chi', 'CARHR124110' => 'chi', 'CARHR203870' => 'chi', 'CARHR203880' => 'chi', 'CARHR203890' => 'chi', 'CARHR276880' => 'chi', 'Carub.0001s0346' => 'cru', 'Carub.0001s0347' => 'cru', 'Carub.0001s0607' => 'cru', 'Carub.0003s2768' => 'cru', 'Carub.0003s2769' => 'cru', 'Carub.0004s1178' => 'cru', 'Carub.0006s0806' => 'cru', 'Carub.0006s0807' => 'cru', 'Carub.0006s0808' => 'cru', 'Carub.0008s0501' => 'cru', 'Carub.0008s2379' => 'cru', 'Ca_08655_v3' => 'car', 'Ca_08922_v3' => 'car', 'Ca_08923_v3' => 'car', 'Ca_09119_v3' => 'car', 'Ca_09703_v3' => 'car', 'Ca_09705_v3' => 'car', 'Ca_09835_v3' => 'car', 'Ca_26403_v3' => 'car', 'Ca_30719_v3' => 'car', 'CBR_g17958' => 'cbr', 'CBR_g40516' => 'cbr', 'Cc00_g05350' => 'ccan', 'Cc01_g18690' => 'ccan', 'Cc03_g04830' => 'ccan', 'Cc03_g04850' => 'ccan', 'CDE02G4469' => 'cde', 'CDE06G0883' => 'cde', 'CDE06G1295' => 'cde', 'CDE06G1390' => 'cde', 'CDE07G0584' => 'cde', 'CDE07G1084' => 'cde', 'CDE08G1259' => 'cde', 'Cfa002341' => 'cfa', 'Cfa024337' => 'cfa', 'Ciclev10004749m.g' => 'ccl', 'Ciclev10006127m.g' => 'ccl', 'Ciclev10019720m.g' => 'ccl', 'Ciclev10022652m.g' => 'ccl', 'CiPaw.01G190400' => 'cil', 'CiPaw.01G190500' => 'cil', 'CiPaw.02G116400' => 'cil', 'CiPaw.02G116500' => 'cil', 'CiPaw.04G183000' => 'cil', 'CiPaw.04G183300' => 'cil', 'ClCG05G004610' => 'cla', 'ClCG05G004620' => 'cla', 'ClCG06G006730' => 'cla', 'ClCG06G006740' => 'cla', 'ClCG11G003690' => 'cla', 'COL.COLO4_08276' => 'col', 'COL.COLO4_08277' => 'col', 'COL.COLO4_15787' => 'col', 'COL.COLO4_15789' => 'col', 'Cpa.g.c44815' => 'cpa', 'Cpa.g.sc52.144' => 'cpa', 'Cpa.g.sc58.46' => 'cpa', 'Cpa.g.sc58.47' => 'cpa', 'Cre08.g360900' => 'cre', 'CsaV3_2G013030' => 'csa', 'CsaV3_2G013050' => 'csa', 'CsaV3_2G015620' => 'csa', 'CsaV3_3G012590' => 'csa', 'CsaV3_3G012600' => 'csa', 'CSS0001641' => 'camsi', 'CSS0008310' => 'camsi', 'CSS0013011' => 'camsi', 'CSS0017147' => 'camsi', 'CSS0022970' => 'camsi', 'CSS0025655' => 'camsi', 'CSS0028665' => 'camsi', 'CSS0029117' => 'camsi', 'CSS0032024' => 'camsi', 'CSS0039681' => 'camsi', 'CSS0046516' => 'camsi', 'CSS0050307' => 'camsi', 'DCAR_005871' => 'dca', 'DCAR_007342' => 'dca', 'DCAR_024228' => 'dca', 'DCAR_027277' => 'dca', 'DCAR_030718' => 'dca', 'Dinv20287' => 'din', 'Dinv22461' => 'din', 'Dinv22464' => 'din', 'Dinv29912' => 'din', 'Dinv29913' => 'din', 'Dinv34580' => 'din', 'Dinv34582' => 'din', 'Dinv44632' => 'din', 'Duzib052G0266' => 'dzi', 'Duzib133G0907' => 'dzi', 'Duzib133G1034' => 'dzi', 'Duzib138G0207' => 'dzi', 'Duzib138G0491' => 'dzi', 'Duzib151G0812' => 'dzi', 'Duzib151G1166' => 'dzi', 'Duzib168G0192' => 'dzi', 'Duzib211G0077' => 'dzi', 'Duzib212G0429' => 'dzi', 'Duzib212G0472' => 'dzi', 'ECA233G2617' => 'eca', 'ECA236G4188' => 'eca', 'ECA240G0936' => 'eca', 'ECA240G1129' => 'eca', 'ECA247G0623' => 'eca', 'EL10Ac5g10451' => 'bvu', 'EL10Ac5g10453' => 'bvu', 'EL10Ac5g10894' => 'bvu', 'Eucgr.H00192' => 'egr', 'Eucgr.H00193' => 'egr', 'Eucgr.H00194' => 'egr', 'Eucgr.J01562' => 'egr', 'Eucgr.K03301' => 'egr', 'FAN02G0632' => 'fan', 'FAN05G5378' => 'fan', 'FAN09G3247' => 'fan', 'FAN12G0435' => 'fan', 'FAN12G2426' => 'fan', 'FAN14G1707' => 'fan', 'FAN14G4725' => 'fan', 'FAN15G2071' => 'fan', 'FAN17G3065' => 'fan', 'FAN19G1376' => 'fan', 'FAN20G0354' => 'fan', 'FAN20G2429' => 'fan', 'FAN20G2658' => 'fan', 'FAN24G2343' => 'fan', 'FAN27G2362' => 'fan', 'FAN28G1765' => 'fan', 'FvH4_1g16020' => 'fve', 'FvH4_2g04890' => 'fve', 'FvH4_2g22270' => 'fve', 'FvH4_4g02630' => 'fve', 'FvH4_4g02640' => 'fve', 'FvH4_6g02650' => 'fve', 'Glyma.02G140600' => 'gma', 'Glyma.03G159900' => 'gma', 'Glyma.05G234800' => 'gma', 'Glyma.07G269600' => 'gma', 'Glyma.08G042300' => 'gma', 'Glyma.10G033500' => 'gma', 'Glyma.10G185200' => 'gma', 'Glyma.17G004300' => 'gma', 'Glyma.19G161900' => 'gma', 'Glyma.20G205100' => 'gma', 'Glyma.20G205200' => 'gma', 'Gohir.A01G139101' => 'ghi', 'Gohir.A02G035600' => 'ghi', 'Gohir.A02G117901' => 'ghi', 'Gohir.A07G210100' => 'ghi', 'Gohir.A07G210200' => 'ghi', 'Gohir.A08G061100' => 'ghi', 'Gohir.A09G223000' => 'ghi', 'Gohir.A09G223100' => 'ghi', 'Gohir.A10G113900' => 'ghi', 'Gohir.A10G114000' => 'ghi', 'Gohir.D02G042300' => 'ghi', 'Gohir.D07G216100' => 'ghi', 'Gohir.D07G216200' => 'ghi', 'Gohir.D08G070400' => 'ghi', 'Gohir.D09G225000' => 'ghi', 'Gohir.D09G225100' => 'ghi', 'Gohir.D10G152300' => 'ghi', 'Gohir.D10G153200' => 'ghi', 'Gohir.D11G133701' => 'ghi', 'Gorai.004G074100' => 'gra', 'Gorai.005G046800' => 'gra', 'Gorai.006G246500' => 'gra', 'Gorai.006G246600' => 'gra', 'Gorai.007G142900' => 'gra', 'Gorai.011G171000' => 'gra', 'Gorai.011G171100' => 'gra', 'Gorai.013G104300' => 'gra', 'Gorai.013G104400' => 'gra', 'GSVIVG01000754001' => 'vvi', 'GSVIVG01000756001' => 'vvi', 'GSVIVG01010903001' => 'vvi', 'GSVIVG01017623001' => 'vvi', 'GSVIVG01018113001' => 'vvi', 'GSVIVG01018116001' => 'vvi', 'GSVIVG01018118001' => 'vvi', 'HanXRQChr03g0076211' => 'han', 'HanXRQChr03g0092431' => 'han', 'HanXRQChr03g0092441' => 'han', 'HanXRQChr03g0092591' => 'han', 'HanXRQChr03g0092671' => 'han', 'HanXRQChr03g0092681' => 'han', 'HanXRQChr03g0092691' => 'han', 'HanXRQChr03g0092701' => 'han', 'HanXRQChr03g0092721' => 'han', 'HanXRQChr03g0092731' => 'han', 'HanXRQChr04g0113681' => 'han', 'HanXRQChr10g0281371' => 'han', 'HanXRQChr11g0337141' => 'han', 'HanXRQChr13g0424521' => 'han', 'HanXRQChr13g0424531' => 'han', 'HanXRQChr13g0424541' => 'han', 'HanXRQChr16g0498221' => 'han', 'Haze_04377' => 'cav', 'Haze_11298' => 'cav', 'Haze_24547' => 'cav', 'Haze_24550' => 'cav', 'Haze_26587' => 'cav', 'Hma1.2p1_0650F.1_g195410' => 'hma', 'Hma1.2p1_0893F.1_g233470' => 'hma', 'HPP92_006508' => 'vpl', 'HPP92_024780' => 'vpl', 'Hund02688' => 'sun', 'Hund09380' => 'sun', 'Hund09381' => 'sun', 'Hund09832' => 'sun', 'Hund09833' => 'sun', 'Hund11351' => 'sun', 'Hund11513' => 'sun', 'Lalb_Chr06g0162591' => 'lal', 'Lalb_Chr06g0162601' => 'lal', 'Lalb_Chr06g0169321' => 'lal', 'Lalb_Chr09g0330951' => 'lal', 'Lalb_Chr16g0387631' => 'lal', 'Lalb_Chr21g0306241' => 'lal', 'Lalb_Chr25g0290051' => 'lal', 'Lalb_Chr25g0290061' => 'lal', 'Lalb_Chr25g0290071' => 'lal', 'Lj1g0003876' => 'lja', 'Lj1P1207T36' => 'lonja', 'Lj2C1156G12' => 'lonja', 'Lj3A793G39' => 'lonja', 'Lj3C580G2' => 'lonja', 'Lj3C780G2' => 'lonja', 'Lj3C780T4' => 'lonja', 'Lj3C793G9' => 'lonja', 'Lj4g0012960' => 'lja', 'Lj5g0021252' => 'lja', 'Lj5g0021484' => 'lja', 'Lj5g0024528' => 'lja', 'Lj6A399T12' => 'lonja', 'Lj6A656G65' => 'lonja', 'Lsat_1_v5_gn_3_125500' => 'lsa', 'Lsat_1_v5_gn_3_125540' => 'lsa', 'Lsat_1_v5_gn_5_72701' => 'lsa', 'Lsat_1_v5_gn_8_91560' => 'lsa', 'Lsat_1_v5_gn_9_9640' => 'lsa', 'Manes.01G200600' => 'mes', 'Manes.01G200700' => 'mes', 'Manes.03G168900' => 'mes', 'Manes.03G169000' => 'mes', 'Manes.05G085801' => 'mes', 'Manes.05G086200' => 'mes', 'Manes.15G036700' => 'mes', 'Manes.15G036900' => 'mes', 'Mapoly0004s0172' => 'mpo', 'Mapoly0023s0001' => 'mpo', 'Mapoly0142s0012' => 'mpo', 'MBI01_g32854_MAGBIO' => 'mbi', 'MBI11_g24427_MAGBIO' => 'mbi', 'MBI11_g47319_MAGBIO' => 'mbi', 'MCO01G433' => 'mco', 'MD00G1187800' => 'mdo', 'MD04G1226500' => 'mdo', 'MD05G1203900' => 'mdo', 'MD10G1191100' => 'mdo', 'MD12G1243500' => 'mdo', 'MD13G1207000' => 'mdo', 'MD13G1207100' => 'mdo', 'MD16G1208600' => 'mdo', 'Medtr1g050352' => 'mtr', 'Medtr1g070385' => 'mtr', 'Medtr1g070450' => 'mtr', 'Medtr1g075200' => 'mtr', 'Medtr1g075250' => 'mtr', 'Medtr1g075260' => 'mtr', 'Medtr1g475250' => 'mtr', 'Medtr4g075450' => 'mtr', 'Medtr7g096300' => 'mtr', 'Medtr8g105110' => 'mtr', 'MELO3C006470.2' => 'cme', 'MELO3C006471.2' => 'cme', 'MELO3C020772.2' => 'cme', 'MELO3C026780.2' => 'cme', 'MELO3C026781.2' => 'cme', 'Migut.D00390' => 'egut', 'Migut.G00435' => 'egut', 'Migut.G00436' => 'egut', 'Migut.G00718' => 'egut', 'MSTRG.21891' => 'ama', 'MSTRG.26910' => 'ama', 'MSTRG.4099' => 'ama', 'MSTRG.9925' => 'ama', 'Nitab4.5_0000165g0010' => 'nta', 'Nitab4.5_0000209g0180' => 'nta', 'Nitab4.5_0000244g0440' => 'nta', 'Nitab4.5_0000525g0220' => 'nta', 'Nitab4.5_0001597g0020' => 'nta', 'Nitab4.5_0001878g0040' => 'nta', 'Nitab4.5_0001878g0060' => 'nta', 'Nitab4.5_0002838g0100' => 'nta', 'Nitab4.5_0002838g0120' => 'nta', 'Nitab4.5_0004798g0030' => 'nta', 'Nitab4.5_0005420g0010' => 'nta', 'Nitab4.5_0005507g0010' => 'nta', 'Nitab4.5_0005574g0020' => 'nta', 'Nitab4.5_0005838g0010' => 'nta', 'Nitab4.5_0010580g0020' => 'nta', 'Nn1g02599' => 'nnu', 'Nn1g02608' => 'nnu', 'Nn3g17742' => 'nnu', 'Nn3g19534' => 'nnu', 'Nn3g19535' => 'nnu', 'Oeu008790.1' => 'oeu', 'Oeu008792.1' => 'oeu', 'Oeu032590.1' => 'oeu', 'Oeu035349.1' => 'oeu', 'Oeu049791.1' => 'oeu', 'Os01g0774500' => 'osa', 'Os03g0628800' => 'osa', 'Os03g0798600' => 'osa', 'Os05g0508800' => 'osa', 'Peaxi162Scf00036g02018' => 'pax', 'Peaxi162Scf00578g00032' => 'pax', 'Peaxi162Scf00578g00317' => 'pax', 'Peaxi162Scf00785g00114' => 'pax', 'Peaxi162Scf00813g00119' => 'pax', 'Peaxi162Scf00906g00227' => 'pax', 'PGR004G0875' => 'pgr', 'PGR004G2424' => 'pgr', 'PGR031G1239' => 'pgr', 'PGR031G2474' => 'pgr', 'PGR044G0423' => 'pgr', 'PGSC0003DMG400001128' => 'stu', 'PGSC0003DMG400007336' => 'stu', 'PGSC0003DMG400016318' => 'stu', 'PGSC0003DMG400016319' => 'stu', 'PGSC0003DMG400018074' => 'stu', 'Phvul.001G157700' => 'pvu', 'Phvul.002G148550' => 'pvu', 'Phvul.002G320200' => 'pvu', 'Phvul.003G089200' => 'pvu', 'Phvul.007G126000' => 'pvu', 'Phvul.007G126100' => 'pvu', 'Phvul.007G178000' => 'pvu', 'Phvul.007G178200' => 'pvu', 'Potri.002G043000' => 'ptr', 'Potri.002G043200' => 'ptr', 'Potri.003G123750' => 'ptr', 'Potri.005G055401' => 'ptr', 'Potri.005G219700' => 'ptr', 'Potri.005G220000' => 'ptr', 'Potri.008G161901' => 'ptr', 'Potri.008G162000' => 'ptr', 'Potri.008G162400' => 'ptr', 'Potri.010G076900' => 'ptr', 'Pp3c12_9180' => 'ppa', 'Pp3c13_19770' => 'ppa', 'Pp3c14_22950' => 'ppa', 'Pp3c16_12160' => 'ppa', 'Pp3c27_7820' => 'ppa', 'Pp3c2_3490' => 'ppa', 'Pp3c3_23700' => 'ppa', 'Pp3c3_36520' => 'ppa', 'Pp3c4_15250' => 'ppa', 'PRCOL_00007002' => 'pco', 'Prupe.1G030600' => 'ppe', 'Prupe.1G030700' => 'ppe', 'Prupe.6G345200' => 'ppe', 'Prupe.8G230300' => 'ppe', 'Prupe.8G230500' => 'ppe', 'Psat3g059600' => 'psa', 'Psat5g200920' => 'psa', 'Psat6g056440' => 'psa', 'Psat6g057360' => 'psa', 'Psat6g134120' => 'psa', 'Psat6g134160' => 'psa', 'Psat7g008640' => 'psa', 'Psat7g185240' => 'psa', 'PSO017G1330' => 'pso', 'PSO063G6097' => 'pso', 'PSO170G0835' => 'pso', 'PSO170G2499' => 'pso', 'PSO210G5058' => 'pso', 'PSO210G6154' => 'pso', 'PSO585G0031' => 'pso', 'PSO832G0264' => 'pso', 'PSO832G4288' => 'pso', 'QL03p027355' => 'qlo', 'QL03p027430' => 'qlo', 'QL04p081380' => 'qlo', 'QL06p015642' => 'qlo', 'QL06p015650' => 'qlo', 'QL06p015686' => 'qlo', 'QL12p042927' => 'qlo', 'QL93p1863_0035' => 'qlo', 'RcHm_v2.0_Chr3g0450581' => 'rch', 'RcHm_v2.0_Chr4g0390371' => 'rch', 'RcHm_v2.0_Chr4g0390381' => 'rch', 'RcHm_v2.0_Chr4g0390491' => 'rch', 'RcHm_v2.0_Chr4g0390501' => 'rch', 'RcHm_v2.0_Chr6g0289231' => 'rch', 'Rhsim04G0190400' => 'rsi', 'Rhsim04G0190500' => 'rsi', 'Rhsim04G0190600' => 'rsi', 'Rhsim13G0031400' => 'rsi', 'Rhsim13G0165600' => 'rsi', 'RhsimUnG0114600' => 'rsi', 'RhsimUnG0114700' => 'rsi', 'Sabra02G0034800' => 'sbr', 'Sabra02G0035100' => 'sbr', 'Sabra05G0168600' => 'sbr', 'Sabra05G0168800' => 'sbr', 'Sabra08G0123700' => 'sbr', 'Sabra10G0031900' => 'sbr', 'Sabra13G0039000' => 'sbr', 'SalBow2G0782' => 'sbo', 'SalBow2G1403' => 'sbo', 'SalBow4G0074' => 'sbo', 'SalBow4G2635' => 'sbo', 'SalBow5G3010' => 'sbo', 'Sc05g0000870' => 'sci', 'Sc05g0000890' => 'sci', 'Sc13g0005000' => 'sci', 'Sc13g0005030' => 'sci', 'Sc19g0003790' => 'sci', 'Sc19g0003800' => 'sci', 'Sed0003467' => 'sed', 'Sed0009355' => 'sed', 'Sed0009894' => 'sed', 'Sed0011972' => 'sed', 'Sed0021483' => 'sed', 'Sed0021750' => 'sed', 'Sed0026279' => 'sed', 'SEGI_05312' => 'sgi', 'SEGI_10112' => 'sgi', 'SEGI_15835' => 'sgi', 'SEGI_30386' => 'sgi', 'SEGI_34122' => 'sgi', 'SEGI_35063' => 'sgi', 'SGA_v2.0_scaffold101G29794' => 'sas', 'SGA_v2.0_scaffold1G00573' => 'sas', 'SGA_v2.0_scaffold79G25637' => 'sas', 'SGA_v2.0_scaffold88G27283' => 'sas', 'SGA_v2.0_scaffold88G27285' => 'sas', 'SGA_v2.0_scaffold88G27331' => 'sas', 'SHI09937' => 'shi', 'SMO119G0302' => 'smo', 'SMO137G0231' => 'smo', 'SMO367G1151' => 'smo', 'Solyc02g082000.3' => 'sly', 'Solyc06g031670.3' => 'sly', 'Solyc06g053810.3' => 'sly', 'Solyc07g025457.1' => 'sly', 'Solyc08g059740.1' => 'sly', 'Solyc08g059750.3' => 'sly', 'Solyc09g083370.3' => 'sly', 'Solyc12g038950.3' => 'sly', 'Sopen02g026630' => 'spe', 'Sopen06g018930' => 'spe', 'Sopen06g018940' => 'spe', 'Sopen08g009460' => 'spe', 'Sopen09g032290' => 'spe', 'Sp1g03080' => 'spa', 'Sp1g03090' => 'spa', 'Sp1g05480' => 'spa', 'Sp2g07860' => 'spa', 'Sp2g08430' => 'spa', 'Sp2g08440' => 'spa', 'Sp2g26200' => 'spa', 'Sp4g13170' => 'spa', 'Sp6g33840' => 'spa', 'SpUn1204_0010' => 'spa', 'TAR365G0908' => 'tar', 'TAR381G1270' => 'tar', 'TAR381G1651' => 'tar', 'TAR625G1131' => 'tar', 'TAR633G0962' => 'tar', 'TAR633G1729' => 'tar', 'TAR633G1864' => 'tar', 'TAR636G0221' => 'tar', 'TAR636G0314' => 'tar', 'TAR636G3202' => 'tar', 'THA.LOC104800805' => 'tha', 'THA.LOC104801096' => 'tha', 'THA.LOC104801555' => 'tha', 'THA.LOC104808491' => 'tha', 'THA.LOC104808595' => 'tha', 'THA.LOC104815985' => 'tha', 'THA.LOC104822250' => 'tha', 'THA.LOC104826071' => 'tha', 'Thecc.01G265200' => 'tca', 'Thecc.01G265300' => 'tca', 'Thecc.01G265700' => 'tca', 'Thecc.03G109100' => 'tca', 'Thecc.04G245900' => 'tca', 'Thecc.04G246000' => 'tca', 'Thhalv10003334m.g' => 'esa', 'Thhalv10005508m.g' => 'esa', 'Thhalv10005643m.g' => 'esa', 'Thhalv10007316m.g' => 'esa', 'Thhalv10009006m.g' => 'esa', 'Thhalv10009309m.g' => 'esa', 'Thhalv10014917m.g' => 'esa', 'Thhalv10014919m.g' => 'esa', 'Thhalv10015393m.g' => 'esa', 'Thhalv10016515m.g' => 'esa', 'Thhalv10029242m.g' => 'esa', 'TPR.G16654' => 'tpr', 'TPR.G20589' => 'tpr', 'TPR.G23029' => 'tpr', 'TPR.G27731' => 'tpr', 'TPR.G28889' => 'tpr', 'TPR.G28899' => 'tpr', 'TPR.G30846' => 'tpr', 'TPR.G5452' => 'tpr', 'TPR.G5713' => 'tpr', 'TPR.G9046' => 'tpr', 'TPR.G9061' => 'tpr', 'TWI09G1075' => 'twi', 'TWI12G0806' => 'twi', 'TWI18G0108' => 'twi', 'TWI53G1361' => 'twi', 'TWI73G0185' => 'twi', 'TWI73G0427' => 'twi', 'unitig_37.g12001' => 'ugi', 'unitig_747.g21660' => 'ugi', 'unitig_748.g7232' => 'ugi', 'unitig_748.g7315' => 'ugi', 'unitig_85.g27262' => 'ugi', 'unitig_92.g28220' => 'ugi', 'vmacro02632' => 'vma', 'vmacro08410' => 'vma', 'vmacro08411' => 'vma', 'vmacro15407' => 'vma', 'VMungo0251G3619' => 'vmu', 'VMungo0720G1204' => 'vmu', 'VMungo0720G1918' => 'vmu', 'VMungo0720G2387' => 'vmu', 'VMungo0720G2961' => 'vmu', 'VMungo1215G2154' => 'vmu', 'VMungo1383G2411' => 'vmu', 'Zm00001eb051130' => 'zma', 'Zm00001eb116830' => 'zma', 'Zm00001eb116850' => 'zma', 'Zm00001eb151740' => 'zma', 'Zm00001eb292360' => 'zma', 'Zm00001eb301640' => 'zma' ), 'gf_id' => 'HOM05D000856', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000856' ), 'data_identifier' => 'HOM05D000856', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000856', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p00010' => 'bna', 'A03p04160' => 'bna', 'A03p17160' => 'bna', 'A04p23370' => 'bna', 'A05p14860' => 'bna', 'A08p37020' => 'bna', 'A09p08050' => 'bna', 'A09p66800' => 'bna', 'A09p67940' => 'bna', 'A10p02680' => 'bna', 'A10p05320' => 'bna', 'Aa31LG1G20560' => 'aar', 'Aa31LG1G20610' => 'aar', 'Aa31LG1G7810' => 'aar', 'Aa31LG5G3590' => 'aar', 'Aa31LG5G6140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3819' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4683' => 'aag', 'Actinidia04480' => 'ach', 'Actinidia05466' => 'ach', 'Actinidia08445' => 'ach', 'Actinidia21170' => 'ach', 'Actinidia24812' => 'ach', 'Actinidia24951' => 'ach', 'Actinidia40088' => 'ach', 'Ah.02g111660' => 'amhyb', 'Ah.11g048900' => 'amhyb', 'Ah.11g049910' => 'amhyb', 'AL1G13870' => 'aly', 'AL1G13880' => 'aly', 'AL1G16760' => 'aly', 'AL390U10020' => 'aly', 'AL4G25520' => 'aly', 'AL6G19890' => 'aly', 'AL6G19900' => 'aly', 'AL6G19910' => 'aly', 'AL8G40100' => 'aly', 'Aqoxy2G03562' => 'aox', 'Aqoxy5G00316' => 'aox', 'Aqoxy5G00926' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1628KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1H403S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2FU6SJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.882I6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8YRY2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YN1SN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AF70II' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZA8L1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F916KL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHRD8H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KTZ8QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S22EMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8M29T' => 'arhy', 'AT1G04270' => 'ath', 'AT1G04280' => 'ath', 'AT1G06750' => 'ath', 'AT1G33850' => 'ath', 'AT2G30630' => 'ath', 'AT5G09490' => 'ath', 'AT5G09500' => 'ath', 'AT5G09510' => 'ath', 'AT5G43640' => 'ath', 'AT5G63070' => 'ath', 'ATR0605G315' => 'atr', 'Atru.chr11.175' => 'acertr', 'Atru.chr11.653' => 'acertr', 'Atru.chr3.1616' => 'acertr', 'Atru.chr4.2230' => 'acertr', 'Atru.chr4.2232' => 'acertr', 'Atru.chr5.1598' => 'acertr', 'Atru.chr5.1600' => 'acertr', 'Atru.chr5.2188' => 'acertr', 'AUR62008326' => 'cqu', 'AUR62011922' => 'cqu', 'AUR62011924' => 'cqu', 'AUR62021771' => 'cqu', 'AUR62032237' => 'cqu', 'AUR62032240' => 'cqu', 'BcaB01g05572' => 'bca', 'BcaB02g10337' => 'bca', 'BcaB04g19944' => 'bca', 'BcaB05g21548' => 'bca', 'BcaB05g21549' => 'bca', 'BcaB05g23227' => 'bca', 'BcaB06g26256' => 'bca', 'BcaB06g26257' => 'bca', 'BcaB06g28379' => 'bca', 'BcaC02g11159' => 'bca', 'BcaC03g13258' => 'bca', 'BcaC03g13259' => 'bca', 'BcaC05g24456' => 'bca', 'BcaC05g24457' => 'bca', 'BcaC07g36922' => 'bca', 'BcaC07g36923' => 'bca', 'BcaC07g42050' => 'bca', 'BcaC07g42176' => 'bca', 'BcaC07g42195' => 'bca', 'BcaC07g42196' => 'bca', 'BcaNung06674' => 'bca', 'BolC2t06351H' => 'bol', 'BolC2t06352H' => 'bol', 'BolC3t12993H' => 'bol', 'BolC4t23525H' => 'bol', 'BolC4t27475H' => 'bol', 'BolC5t29025H' => 'bol', 'BolC5t29026H' => 'bol', 'BolC8t46898H' => 'bol', 'BolC8t46899H' => 'bol', 'BolC8t52630H' => 'bol', 'BolC8t52765H' => 'bol', 'BolC9t53824H' => 'bol', 'BraA03t09760Z' => 'bra', 'BraA03t10990Z' => 'bra', 'BraA05t20413Z' => 'bra', 'BraA08t35602Z' => 'bra', 'BraA09t36458Z' => 'bra', 'BraA09t42018Z' => 'bra', 'BraA09t42129Z' => 'bra', 'BraA10t42536Z' => 'bra', 'BraA10t42537Z' => 'bra', 'C01p10690' => 'bna', 'C02p03890' => 'bna', 'C02p03900' => 'bna', 'C03p04620' => 'bna', 'C04p19870' => 'bna', 'C04p59670' => 'bna', 'C05p02460' => 'bna', 'C05p02470' => 'bna', 'C08p00980' => 'bna', 'C08p00990' => 'bna', 'C08p51030' => 'bna', 'C08p52360' => 'bna', 'C09p09120' => 'bna', 'CAN.G19.15' => 'can', 'CAN.G251.10' => 'can', 'CAN.G251.9' => 'can', 'CAN.G398.24' => 'can', 'CAN.G410.32' => 'can', 'CAN.G881.2' => 'can', 'CANSAT01G3025' => 'cansat', 'CANSAT78G1211' => 'cansat', 'CANSAT78G1218' => 'cansat', 'CANSAT78G1521' => 'cansat', 'CANSAT78G1670' => 'cansat', 'CARHR003600' => 'chi', 'CARHR003610' => 'chi', 'CARHR006290' => 'chi', 'CARHR006430' => 'chi', 'CARHR124110' => 'chi', 'CARHR203870' => 'chi', 'CARHR203880' => 'chi', 'CARHR203890' => 'chi', 'CARHR276880' => 'chi', 'Carub.0001s0346' => 'cru', 'Carub.0001s0347' => 'cru', 'Carub.0001s0607' => 'cru', 'Carub.0003s2768' => 'cru', 'Carub.0003s2769' => 'cru', 'Carub.0004s1178' => 'cru', 'Carub.0006s0806' => 'cru', 'Carub.0006s0807' => 'cru', 'Carub.0006s0808' => 'cru', 'Carub.0008s0501' => 'cru', 'Carub.0008s2379' => 'cru', 'Ca_08655_v3' => 'car', 'Ca_08922_v3' => 'car', 'Ca_08923_v3' => 'car', 'Ca_09119_v3' => 'car', 'Ca_09703_v3' => 'car', 'Ca_09705_v3' => 'car', 'Ca_09835_v3' => 'car', 'Ca_26403_v3' => 'car', 'Ca_30719_v3' => 'car', 'CBR_g17958' => 'cbr', 'CBR_g40516' => 'cbr', 'Cc00_g05350' => 'ccan', 'Cc01_g18690' => 'ccan', 'Cc03_g04830' => 'ccan', 'Cc03_g04850' => 'ccan', 'CDE02G4469' => 'cde', 'CDE06G0883' => 'cde', 'CDE06G1295' => 'cde', 'CDE06G1390' => 'cde', 'CDE07G0584' => 'cde', 'CDE07G1084' => 'cde', 'CDE08G1259' => 'cde', 'Cfa002341' => 'cfa', 'Cfa024337' => 'cfa', 'Ciclev10004749m.g' => 'ccl', 'Ciclev10006127m.g' => 'ccl', 'Ciclev10019720m.g' => 'ccl', 'Ciclev10022652m.g' => 'ccl', 'CiPaw.01G190400' => 'cil', 'CiPaw.01G190500' => 'cil', 'CiPaw.02G116400' => 'cil', 'CiPaw.02G116500' => 'cil', 'CiPaw.04G183000' => 'cil', 'CiPaw.04G183300' => 'cil', 'ClCG05G004610' => 'cla', 'ClCG05G004620' => 'cla', 'ClCG06G006730' => 'cla', 'ClCG06G006740' => 'cla', 'ClCG11G003690' => 'cla', 'COL.COLO4_08276' => 'col', 'COL.COLO4_08277' => 'col', 'COL.COLO4_15787' => 'col', 'COL.COLO4_15789' => 'col', 'Cpa.g.c44815' => 'cpa', 'Cpa.g.sc52.144' => 'cpa', 'Cpa.g.sc58.46' => 'cpa', 'Cpa.g.sc58.47' => 'cpa', 'Cre08.g360900' => 'cre', 'CsaV3_2G013030' => 'csa', 'CsaV3_2G013050' => 'csa', 'CsaV3_2G015620' => 'csa', 'CsaV3_3G012590' => 'csa', 'CsaV3_3G012600' => 'csa', 'CSS0001641' => 'camsi', 'CSS0008310' => 'camsi', 'CSS0013011' => 'camsi', 'CSS0017147' => 'camsi', 'CSS0022970' => 'camsi', 'CSS0025655' => 'camsi', 'CSS0028665' => 'camsi', 'CSS0029117' => 'camsi', 'CSS0032024' => 'camsi', 'CSS0039681' => 'camsi', 'CSS0046516' => 'camsi', 'CSS0050307' => 'camsi', 'DCAR_005871' => 'dca', 'DCAR_007342' => 'dca', 'DCAR_024228' => 'dca', 'DCAR_027277' => 'dca', 'DCAR_030718' => 'dca', 'Dinv20287' => 'din', 'Dinv22461' => 'din', 'Dinv22464' => 'din', 'Dinv29912' => 'din', 'Dinv29913' => 'din', 'Dinv34580' => 'din', 'Dinv34582' => 'din', 'Dinv44632' => 'din', 'Duzib052G0266' => 'dzi', 'Duzib133G0907' => 'dzi', 'Duzib133G1034' => 'dzi', 'Duzib138G0207' => 'dzi', 'Duzib138G0491' => 'dzi', 'Duzib151G0812' => 'dzi', 'Duzib151G1166' => 'dzi', 'Duzib168G0192' => 'dzi', 'Duzib211G0077' => 'dzi', 'Duzib212G0429' => 'dzi', 'Duzib212G0472' => 'dzi', 'ECA233G2617' => 'eca', 'ECA236G4188' => 'eca', 'ECA240G0936' => 'eca', 'ECA240G1129' => 'eca', 'ECA247G0623' => 'eca', 'EL10Ac5g10451' => 'bvu', 'EL10Ac5g10453' => 'bvu', 'EL10Ac5g10894' => 'bvu', 'Eucgr.H00192' => 'egr', 'Eucgr.H00193' => 'egr', 'Eucgr.H00194' => 'egr', 'Eucgr.J01562' => 'egr', 'Eucgr.K03301' => 'egr', 'FAN02G0632' => 'fan', 'FAN05G5378' => 'fan', 'FAN09G3247' => 'fan', 'FAN12G0435' => 'fan', 'FAN12G2426' => 'fan', 'FAN14G1707' => 'fan', 'FAN14G4725' => 'fan', 'FAN15G2071' => 'fan', 'FAN17G3065' => 'fan', 'FAN19G1376' => 'fan', 'FAN20G0354' => 'fan', 'FAN20G2429' => 'fan', 'FAN20G2658' => 'fan', 'FAN24G2343' => 'fan', 'FAN27G2362' => 'fan', 'FAN28G1765' => 'fan', 'FvH4_1g16020' => 'fve', 'FvH4_2g04890' => 'fve', 'FvH4_2g22270' => 'fve', 'FvH4_4g02630' => 'fve', 'FvH4_4g02640' => 'fve', 'FvH4_6g02650' => 'fve', 'Glyma.02G140600' => 'gma', 'Glyma.03G159900' => 'gma', 'Glyma.05G234800' => 'gma', 'Glyma.07G269600' => 'gma', 'Glyma.08G042300' => 'gma', 'Glyma.10G033500' => 'gma', 'Glyma.10G185200' => 'gma', 'Glyma.17G004300' => 'gma', 'Glyma.19G161900' => 'gma', 'Glyma.20G205100' => 'gma', 'Glyma.20G205200' => 'gma', 'Gohir.A01G139101' => 'ghi', 'Gohir.A02G035600' => 'ghi', 'Gohir.A02G117901' => 'ghi', 'Gohir.A07G210100' => 'ghi', 'Gohir.A07G210200' => 'ghi', 'Gohir.A08G061100' => 'ghi', 'Gohir.A09G223000' => 'ghi', 'Gohir.A09G223100' => 'ghi', 'Gohir.A10G113900' => 'ghi', 'Gohir.A10G114000' => 'ghi', 'Gohir.D02G042300' => 'ghi', 'Gohir.D07G216100' => 'ghi', 'Gohir.D07G216200' => 'ghi', 'Gohir.D08G070400' => 'ghi', 'Gohir.D09G225000' => 'ghi', 'Gohir.D09G225100' => 'ghi', 'Gohir.D10G152300' => 'ghi', 'Gohir.D10G153200' => 'ghi', 'Gohir.D11G133701' => 'ghi', 'Gorai.004G074100' => 'gra', 'Gorai.005G046800' => 'gra', 'Gorai.006G246500' => 'gra', 'Gorai.006G246600' => 'gra', 'Gorai.007G142900' => 'gra', 'Gorai.011G171000' => 'gra', 'Gorai.011G171100' => 'gra', 'Gorai.013G104300' => 'gra', 'Gorai.013G104400' => 'gra', 'GSVIVG01000754001' => 'vvi', 'GSVIVG01000756001' => 'vvi', 'GSVIVG01010903001' => 'vvi', 'GSVIVG01017623001' => 'vvi', 'GSVIVG01018113001' => 'vvi', 'GSVIVG01018116001' => 'vvi', 'GSVIVG01018118001' => 'vvi', 'HanXRQChr03g0076211' => 'han', 'HanXRQChr03g0092431' => 'han', 'HanXRQChr03g0092441' => 'han', 'HanXRQChr03g0092591' => 'han', 'HanXRQChr03g0092671' => 'han', 'HanXRQChr03g0092681' => 'han', 'HanXRQChr03g0092691' => 'han', 'HanXRQChr03g0092701' => 'han', 'HanXRQChr03g0092721' => 'han', 'HanXRQChr03g0092731' => 'han', 'HanXRQChr04g0113681' => 'han', 'HanXRQChr10g0281371' => 'han', 'HanXRQChr11g0337141' => 'han', 'HanXRQChr13g0424521' => 'han', 'HanXRQChr13g0424531' => 'han', 'HanXRQChr13g0424541' => 'han', 'HanXRQChr16g0498221' => 'han', 'Haze_04377' => 'cav', 'Haze_11298' => 'cav', 'Haze_24547' => 'cav', 'Haze_24550' => 'cav', 'Haze_26587' => 'cav', 'Hma1.2p1_0650F.1_g195410' => 'hma', 'Hma1.2p1_0893F.1_g233470' => 'hma', 'HPP92_006508' => 'vpl', 'HPP92_024780' => 'vpl', 'Hund02688' => 'sun', 'Hund09380' => 'sun', 'Hund09381' => 'sun', 'Hund09832' => 'sun', 'Hund09833' => 'sun', 'Hund11351' => 'sun', 'Hund11513' => 'sun', 'Lalb_Chr06g0162591' => 'lal', 'Lalb_Chr06g0162601' => 'lal', 'Lalb_Chr06g0169321' => 'lal', 'Lalb_Chr09g0330951' => 'lal', 'Lalb_Chr16g0387631' => 'lal', 'Lalb_Chr21g0306241' => 'lal', 'Lalb_Chr25g0290051' => 'lal', 'Lalb_Chr25g0290061' => 'lal', 'Lalb_Chr25g0290071' => 'lal', 'Lj1g0003876' => 'lja', 'Lj1P1207T36' => 'lonja', 'Lj2C1156G12' => 'lonja', 'Lj3A793G39' => 'lonja', 'Lj3C580G2' => 'lonja', 'Lj3C780G2' => 'lonja', 'Lj3C780T4' => 'lonja', 'Lj3C793G9' => 'lonja', 'Lj4g0012960' => 'lja', 'Lj5g0021252' => 'lja', 'Lj5g0021484' => 'lja', 'Lj5g0024528' => 'lja', 'Lj6A399T12' => 'lonja', 'Lj6A656G65' => 'lonja', 'Lsat_1_v5_gn_3_125500' => 'lsa', 'Lsat_1_v5_gn_3_125540' => 'lsa', 'Lsat_1_v5_gn_5_72701' => 'lsa', 'Lsat_1_v5_gn_8_91560' => 'lsa', 'Lsat_1_v5_gn_9_9640' => 'lsa', 'Manes.01G200600' => 'mes', 'Manes.01G200700' => 'mes', 'Manes.03G168900' => 'mes', 'Manes.03G169000' => 'mes', 'Manes.05G085801' => 'mes', 'Manes.05G086200' => 'mes', 'Manes.15G036700' => 'mes', 'Manes.15G036900' => 'mes', 'Mapoly0004s0172' => 'mpo', 'Mapoly0023s0001' => 'mpo', 'Mapoly0142s0012' => 'mpo', 'MBI01_g32854_MAGBIO' => 'mbi', 'MBI11_g24427_MAGBIO' => 'mbi', 'MBI11_g47319_MAGBIO' => 'mbi', 'MCO01G433' => 'mco', 'MD00G1187800' => 'mdo', 'MD04G1226500' => 'mdo', 'MD05G1203900' => 'mdo', 'MD10G1191100' => 'mdo', 'MD12G1243500' => 'mdo', 'MD13G1207000' => 'mdo', 'MD13G1207100' => 'mdo', 'MD16G1208600' => 'mdo', 'Medtr1g050352' => 'mtr', 'Medtr1g070385' => 'mtr', 'Medtr1g070450' => 'mtr', 'Medtr1g075200' => 'mtr', 'Medtr1g075250' => 'mtr', 'Medtr1g075260' => 'mtr', 'Medtr1g475250' => 'mtr', 'Medtr4g075450' => 'mtr', 'Medtr7g096300' => 'mtr', 'Medtr8g105110' => 'mtr', 'MELO3C006470.2' => 'cme', 'MELO3C006471.2' => 'cme', 'MELO3C020772.2' => 'cme', 'MELO3C026780.2' => 'cme', 'MELO3C026781.2' => 'cme', 'Migut.D00390' => 'egut', 'Migut.G00435' => 'egut', 'Migut.G00436' => 'egut', 'Migut.G00718' => 'egut', 'MSTRG.21891' => 'ama', 'MSTRG.26910' => 'ama', 'MSTRG.4099' => 'ama', 'MSTRG.9925' => 'ama', 'Nitab4.5_0000165g0010' => 'nta', 'Nitab4.5_0000209g0180' => 'nta', 'Nitab4.5_0000244g0440' => 'nta', 'Nitab4.5_0000525g0220' => 'nta', 'Nitab4.5_0001597g0020' => 'nta', 'Nitab4.5_0001878g0040' => 'nta', 'Nitab4.5_0001878g0060' => 'nta', 'Nitab4.5_0002838g0100' => 'nta', 'Nitab4.5_0002838g0120' => 'nta', 'Nitab4.5_0004798g0030' => 'nta', 'Nitab4.5_0005420g0010' => 'nta', 'Nitab4.5_0005507g0010' => 'nta', 'Nitab4.5_0005574g0020' => 'nta', 'Nitab4.5_0005838g0010' => 'nta', 'Nitab4.5_0010580g0020' => 'nta', 'Nn1g02599' => 'nnu', 'Nn1g02608' => 'nnu', 'Nn3g17742' => 'nnu', 'Nn3g19534' => 'nnu', 'Nn3g19535' => 'nnu', 'Oeu008790.1' => 'oeu', 'Oeu008792.1' => 'oeu', 'Oeu032590.1' => 'oeu', 'Oeu035349.1' => 'oeu', 'Oeu049791.1' => 'oeu', 'Os01g0774500' => 'osa', 'Os03g0628800' => 'osa', 'Os03g0798600' => 'osa', 'Os05g0508800' => 'osa', 'Peaxi162Scf00036g02018' => 'pax', 'Peaxi162Scf00578g00032' => 'pax', 'Peaxi162Scf00578g00317' => 'pax', 'Peaxi162Scf00785g00114' => 'pax', 'Peaxi162Scf00813g00119' => 'pax', 'Peaxi162Scf00906g00227' => 'pax', 'PGR004G0875' => 'pgr', 'PGR004G2424' => 'pgr', 'PGR031G1239' => 'pgr', 'PGR031G2474' => 'pgr', 'PGR044G0423' => 'pgr', 'PGSC0003DMG400001128' => 'stu', 'PGSC0003DMG400007336' => 'stu', 'PGSC0003DMG400016318' => 'stu', 'PGSC0003DMG400016319' => 'stu', 'PGSC0003DMG400018074' => 'stu', 'Phvul.001G157700' => 'pvu', 'Phvul.002G148550' => 'pvu', 'Phvul.002G320200' => 'pvu', 'Phvul.003G089200' => 'pvu', 'Phvul.007G126000' => 'pvu', 'Phvul.007G126100' => 'pvu', 'Phvul.007G178000' => 'pvu', 'Phvul.007G178200' => 'pvu', 'Potri.002G043000' => 'ptr', 'Potri.002G043200' => 'ptr', 'Potri.003G123750' => 'ptr', 'Potri.005G055401' => 'ptr', 'Potri.005G219700' => 'ptr', 'Potri.005G220000' => 'ptr', 'Potri.008G161901' => 'ptr', 'Potri.008G162000' => 'ptr', 'Potri.008G162400' => 'ptr', 'Potri.010G076900' => 'ptr', 'Pp3c12_9180' => 'ppa', 'Pp3c13_19770' => 'ppa', 'Pp3c14_22950' => 'ppa', 'Pp3c16_12160' => 'ppa', 'Pp3c27_7820' => 'ppa', 'Pp3c2_3490' => 'ppa', 'Pp3c3_23700' => 'ppa', 'Pp3c3_36520' => 'ppa', 'Pp3c4_15250' => 'ppa', 'PRCOL_00007002' => 'pco', 'Prupe.1G030600' => 'ppe', 'Prupe.1G030700' => 'ppe', 'Prupe.6G345200' => 'ppe', 'Prupe.8G230300' => 'ppe', 'Prupe.8G230500' => 'ppe', 'Psat3g059600' => 'psa', 'Psat5g200920' => 'psa', 'Psat6g056440' => 'psa', 'Psat6g057360' => 'psa', 'Psat6g134120' => 'psa', 'Psat6g134160' => 'psa', 'Psat7g008640' => 'psa', 'Psat7g185240' => 'psa', 'PSO017G1330' => 'pso', 'PSO063G6097' => 'pso', 'PSO170G0835' => 'pso', 'PSO170G2499' => 'pso', 'PSO210G5058' => 'pso', 'PSO210G6154' => 'pso', 'PSO585G0031' => 'pso', 'PSO832G0264' => 'pso', 'PSO832G4288' => 'pso', 'QL03p027355' => 'qlo', 'QL03p027430' => 'qlo', 'QL04p081380' => 'qlo', 'QL06p015642' => 'qlo', 'QL06p015650' => 'qlo', 'QL06p015686' => 'qlo', 'QL12p042927' => 'qlo', 'QL93p1863_0035' => 'qlo', 'RcHm_v2.0_Chr3g0450581' => 'rch', 'RcHm_v2.0_Chr4g0390371' => 'rch', 'RcHm_v2.0_Chr4g0390381' => 'rch', 'RcHm_v2.0_Chr4g0390491' => 'rch', 'RcHm_v2.0_Chr4g0390501' => 'rch', 'RcHm_v2.0_Chr6g0289231' => 'rch', 'Rhsim04G0190400' => 'rsi', 'Rhsim04G0190500' => 'rsi', 'Rhsim04G0190600' => 'rsi', 'Rhsim13G0031400' => 'rsi', 'Rhsim13G0165600' => 'rsi', 'RhsimUnG0114600' => 'rsi', 'RhsimUnG0114700' => 'rsi', 'Sabra02G0034800' => 'sbr', 'Sabra02G0035100' => 'sbr', 'Sabra05G0168600' => 'sbr', 'Sabra05G0168800' => 'sbr', 'Sabra08G0123700' => 'sbr', 'Sabra10G0031900' => 'sbr', 'Sabra13G0039000' => 'sbr', 'SalBow2G0782' => 'sbo', 'SalBow2G1403' => 'sbo', 'SalBow4G0074' => 'sbo', 'SalBow4G2635' => 'sbo', 'SalBow5G3010' => 'sbo', 'Sc05g0000870' => 'sci', 'Sc05g0000890' => 'sci', 'Sc13g0005000' => 'sci', 'Sc13g0005030' => 'sci', 'Sc19g0003790' => 'sci', 'Sc19g0003800' => 'sci', 'Sed0003467' => 'sed', 'Sed0009355' => 'sed', 'Sed0009894' => 'sed', 'Sed0011972' => 'sed', 'Sed0021483' => 'sed', 'Sed0021750' => 'sed', 'Sed0026279' => 'sed', 'SEGI_05312' => 'sgi', 'SEGI_10112' => 'sgi', 'SEGI_15835' => 'sgi', 'SEGI_30386' => 'sgi', 'SEGI_34122' => 'sgi', 'SEGI_35063' => 'sgi', 'SGA_v2.0_scaffold101G29794' => 'sas', 'SGA_v2.0_scaffold1G00573' => 'sas', 'SGA_v2.0_scaffold79G25637' => 'sas', 'SGA_v2.0_scaffold88G27283' => 'sas', 'SGA_v2.0_scaffold88G27285' => 'sas', 'SGA_v2.0_scaffold88G27331' => 'sas', 'SHI09937' => 'shi', 'SMO119G0302' => 'smo', 'SMO137G0231' => 'smo', 'SMO367G1151' => 'smo', 'Solyc02g082000.3' => 'sly', 'Solyc06g031670.3' => 'sly', 'Solyc06g053810.3' => 'sly', 'Solyc07g025457.1' => 'sly', 'Solyc08g059740.1' => 'sly', 'Solyc08g059750.3' => 'sly', 'Solyc09g083370.3' => 'sly', 'Solyc12g038950.3' => 'sly', 'Sopen02g026630' => 'spe', 'Sopen06g018930' => 'spe', 'Sopen06g018940' => 'spe', 'Sopen08g009460' => 'spe', 'Sopen09g032290' => 'spe', 'Sp1g03080' => 'spa', 'Sp1g03090' => 'spa', 'Sp1g05480' => 'spa', 'Sp2g07860' => 'spa', 'Sp2g08430' => 'spa', 'Sp2g08440' => 'spa', 'Sp2g26200' => 'spa', 'Sp4g13170' => 'spa', 'Sp6g33840' => 'spa', 'SpUn1204_0010' => 'spa', 'TAR365G0908' => 'tar', 'TAR381G1270' => 'tar', 'TAR381G1651' => 'tar', 'TAR625G1131' => 'tar', 'TAR633G0962' => 'tar', 'TAR633G1729' => 'tar', 'TAR633G1864' => 'tar', 'TAR636G0221' => 'tar', 'TAR636G0314' => 'tar', 'TAR636G3202' => 'tar', 'THA.LOC104800805' => 'tha', 'THA.LOC104801096' => 'tha', 'THA.LOC104801555' => 'tha', 'THA.LOC104808491' => 'tha', 'THA.LOC104808595' => 'tha', 'THA.LOC104815985' => 'tha', 'THA.LOC104822250' => 'tha', 'THA.LOC104826071' => 'tha', 'Thecc.01G265200' => 'tca', 'Thecc.01G265300' => 'tca', 'Thecc.01G265700' => 'tca', 'Thecc.03G109100' => 'tca', 'Thecc.04G245900' => 'tca', 'Thecc.04G246000' => 'tca', 'Thhalv10003334m.g' => 'esa', 'Thhalv10005508m.g' => 'esa', 'Thhalv10005643m.g' => 'esa', 'Thhalv10007316m.g' => 'esa', 'Thhalv10009006m.g' => 'esa', 'Thhalv10009309m.g' => 'esa', 'Thhalv10014917m.g' => 'esa', 'Thhalv10014919m.g' => 'esa', 'Thhalv10015393m.g' => 'esa', 'Thhalv10016515m.g' => 'esa', 'Thhalv10029242m.g' => 'esa', 'TPR.G16654' => 'tpr', 'TPR.G20589' => 'tpr', 'TPR.G23029' => 'tpr', 'TPR.G27731' => 'tpr', 'TPR.G28889' => 'tpr', 'TPR.G28899' => 'tpr', 'TPR.G30846' => 'tpr', 'TPR.G5452' => 'tpr', 'TPR.G5713' => 'tpr', 'TPR.G9046' => 'tpr', 'TPR.G9061' => 'tpr', 'TWI09G1075' => 'twi', 'TWI12G0806' => 'twi', 'TWI18G0108' => 'twi', 'TWI53G1361' => 'twi', 'TWI73G0185' => 'twi', 'TWI73G0427' => 'twi', 'unitig_37.g12001' => 'ugi', 'unitig_747.g21660' => 'ugi', 'unitig_748.g7232' => 'ugi', 'unitig_748.g7315' => 'ugi', 'unitig_85.g27262' => 'ugi', 'unitig_92.g28220' => 'ugi', 'vmacro02632' => 'vma', 'vmacro08410' => 'vma', 'vmacro08411' => 'vma', 'vmacro15407' => 'vma', 'VMungo0251G3619' => 'vmu', 'VMungo0720G1204' => 'vmu', 'VMungo0720G1918' => 'vmu', 'VMungo0720G2387' => 'vmu', 'VMungo0720G2961' => 'vmu', 'VMungo1215G2154' => 'vmu', 'VMungo1383G2411' => 'vmu', 'Zm00001eb051130' => 'zma', 'Zm00001eb116830' => 'zma', 'Zm00001eb116850' => 'zma', 'Zm00001eb151740' => 'zma', 'Zm00001eb292360' => 'zma', 'Zm00001eb301640' => 'zma' ) $gf_id = 'HOM05D000856' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000856' ) $data_identifier = 'HOM05D000856' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 13, 'ath' => (int) 10, 'atr' => (int) 1, 'acertr' => (int) 8, 'cqu' => (int) 6, 'bca' => (int) 21, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 11, 'car' => (int) 9, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 8, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 5, 'fan' => (int) 16, 'fve' => (int) 6, 'gma' => (int) 11, 'ghi' => (int) 19, 'gra' => (int) 9, 'vvi' => (int) 7, 'han' => (int) 17, 'cav' => (int) 5, 'hma' => (int) 2, 'vpl' => (int) 2, 'sun' => (int) 7, 'lal' => (int) 9, 'lja' => (int) 5, 'lonja' => (int) 9, 'lsa' => (int) 5, 'mes' => (int) 8, 'mpo' => (int) 3, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 10, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 15, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 9, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 9, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 6, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 5, 'spa' => (int) 10, 'tar' => (int) 10, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 11, 'tpr' => (int) 11, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 4, 'vmu' => (int) 7, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb301640' $species_info = array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ) $local_species = 'aox' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000856', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p00010' => 'bna', 'A03p04160' => 'bna', 'A03p17160' => 'bna', 'A04p23370' => 'bna', 'A05p14860' => 'bna', 'A08p37020' => 'bna', 'A09p08050' => 'bna', 'A09p66800' => 'bna', 'A09p67940' => 'bna', 'A10p02680' => 'bna', 'A10p05320' => 'bna', 'Aa31LG1G20560' => 'aar', 'Aa31LG1G20610' => 'aar', 'Aa31LG1G7810' => 'aar', 'Aa31LG5G3590' => 'aar', 'Aa31LG5G6140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3819' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4683' => 'aag', 'Actinidia04480' => 'ach', 'Actinidia05466' => 'ach', 'Actinidia08445' => 'ach', 'Actinidia21170' => 'ach', 'Actinidia24812' => 'ach', 'Actinidia24951' => 'ach', 'Actinidia40088' => 'ach', 'Ah.02g111660' => 'amhyb', 'Ah.11g048900' => 'amhyb', 'Ah.11g049910' => 'amhyb', 'AL1G13870' => 'aly', 'AL1G13880' => 'aly', 'AL1G16760' => 'aly', 'AL390U10020' => 'aly', 'AL4G25520' => 'aly', 'AL6G19890' => 'aly', 'AL6G19900' => 'aly', 'AL6G19910' => 'aly', 'AL8G40100' => 'aly', 'Aqoxy2G03562' => 'aox', 'Aqoxy5G00316' => 'aox', 'Aqoxy5G00926' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1628KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1H403S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2FU6SJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.882I6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8YRY2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YN1SN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AF70II' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZA8L1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F916KL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHRD8H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KTZ8QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S22EMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8M29T' => 'arhy', 'AT1G04270' => 'ath', 'AT1G04280' => 'ath', 'AT1G06750' => 'ath', 'AT1G33850' => 'ath', 'AT2G30630' => 'ath', 'AT5G09490' => 'ath', 'AT5G09500' => 'ath', 'AT5G09510' => 'ath', 'AT5G43640' => 'ath', 'AT5G63070' => 'ath', 'ATR0605G315' => 'atr', 'Atru.chr11.175' => 'acertr', 'Atru.chr11.653' => 'acertr', 'Atru.chr3.1616' => 'acertr', 'Atru.chr4.2230' => 'acertr', 'Atru.chr4.2232' => 'acertr', 'Atru.chr5.1598' => 'acertr', 'Atru.chr5.1600' => 'acertr', 'Atru.chr5.2188' => 'acertr', 'AUR62008326' => 'cqu', 'AUR62011922' => 'cqu', 'AUR62011924' => 'cqu', 'AUR62021771' => 'cqu', 'AUR62032237' => 'cqu', 'AUR62032240' => 'cqu', 'BcaB01g05572' => 'bca', 'BcaB02g10337' => 'bca', 'BcaB04g19944' => 'bca', 'BcaB05g21548' => 'bca', 'BcaB05g21549' => 'bca', 'BcaB05g23227' => 'bca', 'BcaB06g26256' => 'bca', 'BcaB06g26257' => 'bca', 'BcaB06g28379' => 'bca', 'BcaC02g11159' => 'bca', 'BcaC03g13258' => 'bca', 'BcaC03g13259' => 'bca', 'BcaC05g24456' => 'bca', 'BcaC05g24457' => 'bca', 'BcaC07g36922' => 'bca', 'BcaC07g36923' => 'bca', 'BcaC07g42050' => 'bca', 'BcaC07g42176' => 'bca', 'BcaC07g42195' => 'bca', 'BcaC07g42196' => 'bca', 'BcaNung06674' => 'bca', 'BolC2t06351H' => 'bol', 'BolC2t06352H' => 'bol', 'BolC3t12993H' => 'bol', 'BolC4t23525H' => 'bol', 'BolC4t27475H' => 'bol', 'BolC5t29025H' => 'bol', 'BolC5t29026H' => 'bol', 'BolC8t46898H' => 'bol', 'BolC8t46899H' => 'bol', 'BolC8t52630H' => 'bol', 'BolC8t52765H' => 'bol', 'BolC9t53824H' => 'bol', 'BraA03t09760Z' => 'bra', 'BraA03t10990Z' => 'bra', 'BraA05t20413Z' => 'bra', 'BraA08t35602Z' => 'bra', 'BraA09t36458Z' => 'bra', 'BraA09t42018Z' => 'bra', 'BraA09t42129Z' => 'bra', 'BraA10t42536Z' => 'bra', 'BraA10t42537Z' => 'bra', 'C01p10690' => 'bna', 'C02p03890' => 'bna', 'C02p03900' => 'bna', 'C03p04620' => 'bna', 'C04p19870' => 'bna', 'C04p59670' => 'bna', 'C05p02460' => 'bna', 'C05p02470' => 'bna', 'C08p00980' => 'bna', 'C08p00990' => 'bna', 'C08p51030' => 'bna', 'C08p52360' => 'bna', 'C09p09120' => 'bna', 'CAN.G19.15' => 'can', 'CAN.G251.10' => 'can', 'CAN.G251.9' => 'can', 'CAN.G398.24' => 'can', 'CAN.G410.32' => 'can', 'CAN.G881.2' => 'can', 'CANSAT01G3025' => 'cansat', 'CANSAT78G1211' => 'cansat', 'CANSAT78G1218' => 'cansat', 'CANSAT78G1521' => 'cansat', 'CANSAT78G1670' => 'cansat', 'CARHR003600' => 'chi', 'CARHR003610' => 'chi', 'CARHR006290' => 'chi', 'CARHR006430' => 'chi', 'CARHR124110' => 'chi', 'CARHR203870' => 'chi', 'CARHR203880' => 'chi', 'CARHR203890' => 'chi', 'CARHR276880' => 'chi', 'Carub.0001s0346' => 'cru', 'Carub.0001s0347' => 'cru', 'Carub.0001s0607' => 'cru', 'Carub.0003s2768' => 'cru', 'Carub.0003s2769' => 'cru', 'Carub.0004s1178' => 'cru', 'Carub.0006s0806' => 'cru', 'Carub.0006s0807' => 'cru', 'Carub.0006s0808' => 'cru', 'Carub.0008s0501' => 'cru', 'Carub.0008s2379' => 'cru', 'Ca_08655_v3' => 'car', 'Ca_08922_v3' => 'car', 'Ca_08923_v3' => 'car', 'Ca_09119_v3' => 'car', 'Ca_09703_v3' => 'car', 'Ca_09705_v3' => 'car', 'Ca_09835_v3' => 'car', 'Ca_26403_v3' => 'car', 'Ca_30719_v3' => 'car', 'CBR_g17958' => 'cbr', 'CBR_g40516' => 'cbr', 'Cc00_g05350' => 'ccan', 'Cc01_g18690' => 'ccan', 'Cc03_g04830' => 'ccan', 'Cc03_g04850' => 'ccan', 'CDE02G4469' => 'cde', 'CDE06G0883' => 'cde', 'CDE06G1295' => 'cde', 'CDE06G1390' => 'cde', 'CDE07G0584' => 'cde', 'CDE07G1084' => 'cde', 'CDE08G1259' => 'cde', 'Cfa002341' => 'cfa', 'Cfa024337' => 'cfa', 'Ciclev10004749m.g' => 'ccl', 'Ciclev10006127m.g' => 'ccl', 'Ciclev10019720m.g' => 'ccl', 'Ciclev10022652m.g' => 'ccl', 'CiPaw.01G190400' => 'cil', 'CiPaw.01G190500' => 'cil', 'CiPaw.02G116400' => 'cil', 'CiPaw.02G116500' => 'cil', 'CiPaw.04G183000' => 'cil', 'CiPaw.04G183300' => 'cil', 'ClCG05G004610' => 'cla', 'ClCG05G004620' => 'cla', 'ClCG06G006730' => 'cla', 'ClCG06G006740' => 'cla', 'ClCG11G003690' => 'cla', 'COL.COLO4_08276' => 'col', 'COL.COLO4_08277' => 'col', 'COL.COLO4_15787' => 'col', 'COL.COLO4_15789' => 'col', 'Cpa.g.c44815' => 'cpa', 'Cpa.g.sc52.144' => 'cpa', 'Cpa.g.sc58.46' => 'cpa', 'Cpa.g.sc58.47' => 'cpa', 'Cre08.g360900' => 'cre', 'CsaV3_2G013030' => 'csa', 'CsaV3_2G013050' => 'csa', 'CsaV3_2G015620' => 'csa', 'CsaV3_3G012590' => 'csa', 'CsaV3_3G012600' => 'csa', 'CSS0001641' => 'camsi', 'CSS0008310' => 'camsi', 'CSS0013011' => 'camsi', 'CSS0017147' => 'camsi', 'CSS0022970' => 'camsi', 'CSS0025655' => 'camsi', 'CSS0028665' => 'camsi', 'CSS0029117' => 'camsi', 'CSS0032024' => 'camsi', 'CSS0039681' => 'camsi', 'CSS0046516' => 'camsi', 'CSS0050307' => 'camsi', 'DCAR_005871' => 'dca', 'DCAR_007342' => 'dca', 'DCAR_024228' => 'dca', 'DCAR_027277' => 'dca', 'DCAR_030718' => 'dca', 'Dinv20287' => 'din', 'Dinv22461' => 'din', 'Dinv22464' => 'din', 'Dinv29912' => 'din', 'Dinv29913' => 'din', 'Dinv34580' => 'din', 'Dinv34582' => 'din', 'Dinv44632' => 'din', 'Duzib052G0266' => 'dzi', 'Duzib133G0907' => 'dzi', 'Duzib133G1034' => 'dzi', 'Duzib138G0207' => 'dzi', 'Duzib138G0491' => 'dzi', 'Duzib151G0812' => 'dzi', 'Duzib151G1166' => 'dzi', 'Duzib168G0192' => 'dzi', 'Duzib211G0077' => 'dzi', 'Duzib212G0429' => 'dzi', 'Duzib212G0472' => 'dzi', 'ECA233G2617' => 'eca', 'ECA236G4188' => 'eca', 'ECA240G0936' => 'eca', 'ECA240G1129' => 'eca', 'ECA247G0623' => 'eca', 'EL10Ac5g10451' => 'bvu', 'EL10Ac5g10453' => 'bvu', 'EL10Ac5g10894' => 'bvu', 'Eucgr.H00192' => 'egr', 'Eucgr.H00193' => 'egr', 'Eucgr.H00194' => 'egr', 'Eucgr.J01562' => 'egr', 'Eucgr.K03301' => 'egr', 'FAN02G0632' => 'fan', 'FAN05G5378' => 'fan', 'FAN09G3247' => 'fan', 'FAN12G0435' => 'fan', 'FAN12G2426' => 'fan', 'FAN14G1707' => 'fan', 'FAN14G4725' => 'fan', 'FAN15G2071' => 'fan', 'FAN17G3065' => 'fan', 'FAN19G1376' => 'fan', 'FAN20G0354' => 'fan', 'FAN20G2429' => 'fan', 'FAN20G2658' => 'fan', 'FAN24G2343' => 'fan', 'FAN27G2362' => 'fan', 'FAN28G1765' => 'fan', 'FvH4_1g16020' => 'fve', 'FvH4_2g04890' => 'fve', 'FvH4_2g22270' => 'fve', 'FvH4_4g02630' => 'fve', 'FvH4_4g02640' => 'fve', 'FvH4_6g02650' => 'fve', 'Glyma.02G140600' => 'gma', 'Glyma.03G159900' => 'gma', 'Glyma.05G234800' => 'gma', 'Glyma.07G269600' => 'gma', 'Glyma.08G042300' => 'gma', 'Glyma.10G033500' => 'gma', 'Glyma.10G185200' => 'gma', 'Glyma.17G004300' => 'gma', 'Glyma.19G161900' => 'gma', 'Glyma.20G205100' => 'gma', 'Glyma.20G205200' => 'gma', 'Gohir.A01G139101' => 'ghi', 'Gohir.A02G035600' => 'ghi', 'Gohir.A02G117901' => 'ghi', 'Gohir.A07G210100' => 'ghi', 'Gohir.A07G210200' => 'ghi', 'Gohir.A08G061100' => 'ghi', 'Gohir.A09G223000' => 'ghi', 'Gohir.A09G223100' => 'ghi', 'Gohir.A10G113900' => 'ghi', 'Gohir.A10G114000' => 'ghi', 'Gohir.D02G042300' => 'ghi', 'Gohir.D07G216100' => 'ghi', 'Gohir.D07G216200' => 'ghi', 'Gohir.D08G070400' => 'ghi', 'Gohir.D09G225000' => 'ghi', 'Gohir.D09G225100' => 'ghi', 'Gohir.D10G152300' => 'ghi', 'Gohir.D10G153200' => 'ghi', 'Gohir.D11G133701' => 'ghi', 'Gorai.004G074100' => 'gra', 'Gorai.005G046800' => 'gra', 'Gorai.006G246500' => 'gra', 'Gorai.006G246600' => 'gra', 'Gorai.007G142900' => 'gra', 'Gorai.011G171000' => 'gra', 'Gorai.011G171100' => 'gra', 'Gorai.013G104300' => 'gra', 'Gorai.013G104400' => 'gra', 'GSVIVG01000754001' => 'vvi', 'GSVIVG01000756001' => 'vvi', 'GSVIVG01010903001' => 'vvi', 'GSVIVG01017623001' => 'vvi', 'GSVIVG01018113001' => 'vvi', 'GSVIVG01018116001' => 'vvi', 'GSVIVG01018118001' => 'vvi', 'HanXRQChr03g0076211' => 'han', 'HanXRQChr03g0092431' => 'han', 'HanXRQChr03g0092441' => 'han', 'HanXRQChr03g0092591' => 'han', 'HanXRQChr03g0092671' => 'han', 'HanXRQChr03g0092681' => 'han', 'HanXRQChr03g0092691' => 'han', 'HanXRQChr03g0092701' => 'han', 'HanXRQChr03g0092721' => 'han', 'HanXRQChr03g0092731' => 'han', 'HanXRQChr04g0113681' => 'han', 'HanXRQChr10g0281371' => 'han', 'HanXRQChr11g0337141' => 'han', 'HanXRQChr13g0424521' => 'han', 'HanXRQChr13g0424531' => 'han', 'HanXRQChr13g0424541' => 'han', 'HanXRQChr16g0498221' => 'han', 'Haze_04377' => 'cav', 'Haze_11298' => 'cav', 'Haze_24547' => 'cav', 'Haze_24550' => 'cav', 'Haze_26587' => 'cav', 'Hma1.2p1_0650F.1_g195410' => 'hma', 'Hma1.2p1_0893F.1_g233470' => 'hma', 'HPP92_006508' => 'vpl', 'HPP92_024780' => 'vpl', 'Hund02688' => 'sun', 'Hund09380' => 'sun', 'Hund09381' => 'sun', 'Hund09832' => 'sun', 'Hund09833' => 'sun', 'Hund11351' => 'sun', 'Hund11513' => 'sun', 'Lalb_Chr06g0162591' => 'lal', 'Lalb_Chr06g0162601' => 'lal', 'Lalb_Chr06g0169321' => 'lal', 'Lalb_Chr09g0330951' => 'lal', 'Lalb_Chr16g0387631' => 'lal', 'Lalb_Chr21g0306241' => 'lal', 'Lalb_Chr25g0290051' => 'lal', 'Lalb_Chr25g0290061' => 'lal', 'Lalb_Chr25g0290071' => 'lal', 'Lj1g0003876' => 'lja', 'Lj1P1207T36' => 'lonja', 'Lj2C1156G12' => 'lonja', 'Lj3A793G39' => 'lonja', 'Lj3C580G2' => 'lonja', 'Lj3C780G2' => 'lonja', 'Lj3C780T4' => 'lonja', 'Lj3C793G9' => 'lonja', 'Lj4g0012960' => 'lja', 'Lj5g0021252' => 'lja', 'Lj5g0021484' => 'lja', 'Lj5g0024528' => 'lja', 'Lj6A399T12' => 'lonja', 'Lj6A656G65' => 'lonja', 'Lsat_1_v5_gn_3_125500' => 'lsa', 'Lsat_1_v5_gn_3_125540' => 'lsa', 'Lsat_1_v5_gn_5_72701' => 'lsa', 'Lsat_1_v5_gn_8_91560' => 'lsa', 'Lsat_1_v5_gn_9_9640' => 'lsa', 'Manes.01G200600' => 'mes', 'Manes.01G200700' => 'mes', 'Manes.03G168900' => 'mes', 'Manes.03G169000' => 'mes', 'Manes.05G085801' => 'mes', 'Manes.05G086200' => 'mes', 'Manes.15G036700' => 'mes', 'Manes.15G036900' => 'mes', 'Mapoly0004s0172' => 'mpo', 'Mapoly0023s0001' => 'mpo', 'Mapoly0142s0012' => 'mpo', 'MBI01_g32854_MAGBIO' => 'mbi', 'MBI11_g24427_MAGBIO' => 'mbi', 'MBI11_g47319_MAGBIO' => 'mbi', 'MCO01G433' => 'mco', 'MD00G1187800' => 'mdo', 'MD04G1226500' => 'mdo', 'MD05G1203900' => 'mdo', 'MD10G1191100' => 'mdo', 'MD12G1243500' => 'mdo', 'MD13G1207000' => 'mdo', 'MD13G1207100' => 'mdo', 'MD16G1208600' => 'mdo', 'Medtr1g050352' => 'mtr', 'Medtr1g070385' => 'mtr', 'Medtr1g070450' => 'mtr', 'Medtr1g075200' => 'mtr', 'Medtr1g075250' => 'mtr', 'Medtr1g075260' => 'mtr', 'Medtr1g475250' => 'mtr', 'Medtr4g075450' => 'mtr', 'Medtr7g096300' => 'mtr', 'Medtr8g105110' => 'mtr', 'MELO3C006470.2' => 'cme', 'MELO3C006471.2' => 'cme', 'MELO3C020772.2' => 'cme', 'MELO3C026780.2' => 'cme', 'MELO3C026781.2' => 'cme', 'Migut.D00390' => 'egut', 'Migut.G00435' => 'egut', 'Migut.G00436' => 'egut', 'Migut.G00718' => 'egut', 'MSTRG.21891' => 'ama', 'MSTRG.26910' => 'ama', 'MSTRG.4099' => 'ama', 'MSTRG.9925' => 'ama', 'Nitab4.5_0000165g0010' => 'nta', 'Nitab4.5_0000209g0180' => 'nta', 'Nitab4.5_0000244g0440' => 'nta', 'Nitab4.5_0000525g0220' => 'nta', 'Nitab4.5_0001597g0020' => 'nta', 'Nitab4.5_0001878g0040' => 'nta', 'Nitab4.5_0001878g0060' => 'nta', 'Nitab4.5_0002838g0100' => 'nta', 'Nitab4.5_0002838g0120' => 'nta', 'Nitab4.5_0004798g0030' => 'nta', 'Nitab4.5_0005420g0010' => 'nta', 'Nitab4.5_0005507g0010' => 'nta', 'Nitab4.5_0005574g0020' => 'nta', 'Nitab4.5_0005838g0010' => 'nta', 'Nitab4.5_0010580g0020' => 'nta', 'Nn1g02599' => 'nnu', 'Nn1g02608' => 'nnu', 'Nn3g17742' => 'nnu', 'Nn3g19534' => 'nnu', 'Nn3g19535' => 'nnu', 'Oeu008790.1' => 'oeu', 'Oeu008792.1' => 'oeu', 'Oeu032590.1' => 'oeu', 'Oeu035349.1' => 'oeu', 'Oeu049791.1' => 'oeu', 'Os01g0774500' => 'osa', 'Os03g0628800' => 'osa', 'Os03g0798600' => 'osa', 'Os05g0508800' => 'osa', 'Peaxi162Scf00036g02018' => 'pax', 'Peaxi162Scf00578g00032' => 'pax', 'Peaxi162Scf00578g00317' => 'pax', 'Peaxi162Scf00785g00114' => 'pax', 'Peaxi162Scf00813g00119' => 'pax', 'Peaxi162Scf00906g00227' => 'pax', 'PGR004G0875' => 'pgr', 'PGR004G2424' => 'pgr', 'PGR031G1239' => 'pgr', 'PGR031G2474' => 'pgr', 'PGR044G0423' => 'pgr', 'PGSC0003DMG400001128' => 'stu', 'PGSC0003DMG400007336' => 'stu', 'PGSC0003DMG400016318' => 'stu', 'PGSC0003DMG400016319' => 'stu', 'PGSC0003DMG400018074' => 'stu', 'Phvul.001G157700' => 'pvu', 'Phvul.002G148550' => 'pvu', 'Phvul.002G320200' => 'pvu', 'Phvul.003G089200' => 'pvu', 'Phvul.007G126000' => 'pvu', 'Phvul.007G126100' => 'pvu', 'Phvul.007G178000' => 'pvu', 'Phvul.007G178200' => 'pvu', 'Potri.002G043000' => 'ptr', 'Potri.002G043200' => 'ptr', 'Potri.003G123750' => 'ptr', 'Potri.005G055401' => 'ptr', 'Potri.005G219700' => 'ptr', 'Potri.005G220000' => 'ptr', 'Potri.008G161901' => 'ptr', 'Potri.008G162000' => 'ptr', 'Potri.008G162400' => 'ptr', 'Potri.010G076900' => 'ptr', 'Pp3c12_9180' => 'ppa', 'Pp3c13_19770' => 'ppa', 'Pp3c14_22950' => 'ppa', 'Pp3c16_12160' => 'ppa', 'Pp3c27_7820' => 'ppa', 'Pp3c2_3490' => 'ppa', 'Pp3c3_23700' => 'ppa', 'Pp3c3_36520' => 'ppa', 'Pp3c4_15250' => 'ppa', 'PRCOL_00007002' => 'pco', 'Prupe.1G030600' => 'ppe', 'Prupe.1G030700' => 'ppe', 'Prupe.6G345200' => 'ppe', 'Prupe.8G230300' => 'ppe', 'Prupe.8G230500' => 'ppe', 'Psat3g059600' => 'psa', 'Psat5g200920' => 'psa', 'Psat6g056440' => 'psa', 'Psat6g057360' => 'psa', 'Psat6g134120' => 'psa', 'Psat6g134160' => 'psa', 'Psat7g008640' => 'psa', 'Psat7g185240' => 'psa', 'PSO017G1330' => 'pso', 'PSO063G6097' => 'pso', 'PSO170G0835' => 'pso', 'PSO170G2499' => 'pso', 'PSO210G5058' => 'pso', 'PSO210G6154' => 'pso', 'PSO585G0031' => 'pso', 'PSO832G0264' => 'pso', 'PSO832G4288' => 'pso', 'QL03p027355' => 'qlo', 'QL03p027430' => 'qlo', 'QL04p081380' => 'qlo', 'QL06p015642' => 'qlo', 'QL06p015650' => 'qlo', 'QL06p015686' => 'qlo', 'QL12p042927' => 'qlo', 'QL93p1863_0035' => 'qlo', 'RcHm_v2.0_Chr3g0450581' => 'rch', 'RcHm_v2.0_Chr4g0390371' => 'rch', 'RcHm_v2.0_Chr4g0390381' => 'rch', 'RcHm_v2.0_Chr4g0390491' => 'rch', 'RcHm_v2.0_Chr4g0390501' => 'rch', 'RcHm_v2.0_Chr6g0289231' => 'rch', 'Rhsim04G0190400' => 'rsi', 'Rhsim04G0190500' => 'rsi', 'Rhsim04G0190600' => 'rsi', 'Rhsim13G0031400' => 'rsi', 'Rhsim13G0165600' => 'rsi', 'RhsimUnG0114600' => 'rsi', 'RhsimUnG0114700' => 'rsi', 'Sabra02G0034800' => 'sbr', 'Sabra02G0035100' => 'sbr', 'Sabra05G0168600' => 'sbr', 'Sabra05G0168800' => 'sbr', 'Sabra08G0123700' => 'sbr', 'Sabra10G0031900' => 'sbr', 'Sabra13G0039000' => 'sbr', 'SalBow2G0782' => 'sbo', 'SalBow2G1403' => 'sbo', 'SalBow4G0074' => 'sbo', 'SalBow4G2635' => 'sbo', 'SalBow5G3010' => 'sbo', 'Sc05g0000870' => 'sci', 'Sc05g0000890' => 'sci', 'Sc13g0005000' => 'sci', 'Sc13g0005030' => 'sci', 'Sc19g0003790' => 'sci', 'Sc19g0003800' => 'sci', 'Sed0003467' => 'sed', 'Sed0009355' => 'sed', 'Sed0009894' => 'sed', 'Sed0011972' => 'sed', 'Sed0021483' => 'sed', 'Sed0021750' => 'sed', 'Sed0026279' => 'sed', 'SEGI_05312' => 'sgi', 'SEGI_10112' => 'sgi', 'SEGI_15835' => 'sgi', 'SEGI_30386' => 'sgi', 'SEGI_34122' => 'sgi', 'SEGI_35063' => 'sgi', 'SGA_v2.0_scaffold101G29794' => 'sas', 'SGA_v2.0_scaffold1G00573' => 'sas', 'SGA_v2.0_scaffold79G25637' => 'sas', 'SGA_v2.0_scaffold88G27283' => 'sas', 'SGA_v2.0_scaffold88G27285' => 'sas', 'SGA_v2.0_scaffold88G27331' => 'sas', 'SHI09937' => 'shi', 'SMO119G0302' => 'smo', 'SMO137G0231' => 'smo', 'SMO367G1151' => 'smo', 'Solyc02g082000.3' => 'sly', 'Solyc06g031670.3' => 'sly', 'Solyc06g053810.3' => 'sly', 'Solyc07g025457.1' => 'sly', 'Solyc08g059740.1' => 'sly', 'Solyc08g059750.3' => 'sly', 'Solyc09g083370.3' => 'sly', 'Solyc12g038950.3' => 'sly', 'Sopen02g026630' => 'spe', 'Sopen06g018930' => 'spe', 'Sopen06g018940' => 'spe', 'Sopen08g009460' => 'spe', 'Sopen09g032290' => 'spe', 'Sp1g03080' => 'spa', 'Sp1g03090' => 'spa', 'Sp1g05480' => 'spa', 'Sp2g07860' => 'spa', 'Sp2g08430' => 'spa', 'Sp2g08440' => 'spa', 'Sp2g26200' => 'spa', 'Sp4g13170' => 'spa', 'Sp6g33840' => 'spa', 'SpUn1204_0010' => 'spa', 'TAR365G0908' => 'tar', 'TAR381G1270' => 'tar', 'TAR381G1651' => 'tar', 'TAR625G1131' => 'tar', 'TAR633G0962' => 'tar', 'TAR633G1729' => 'tar', 'TAR633G1864' => 'tar', 'TAR636G0221' => 'tar', 'TAR636G0314' => 'tar', 'TAR636G3202' => 'tar', 'THA.LOC104800805' => 'tha', 'THA.LOC104801096' => 'tha', 'THA.LOC104801555' => 'tha', 'THA.LOC104808491' => 'tha', 'THA.LOC104808595' => 'tha', 'THA.LOC104815985' => 'tha', 'THA.LOC104822250' => 'tha', 'THA.LOC104826071' => 'tha', 'Thecc.01G265200' => 'tca', 'Thecc.01G265300' => 'tca', 'Thecc.01G265700' => 'tca', 'Thecc.03G109100' => 'tca', 'Thecc.04G245900' => 'tca', 'Thecc.04G246000' => 'tca', 'Thhalv10003334m.g' => 'esa', 'Thhalv10005508m.g' => 'esa', 'Thhalv10005643m.g' => 'esa', 'Thhalv10007316m.g' => 'esa', 'Thhalv10009006m.g' => 'esa', 'Thhalv10009309m.g' => 'esa', 'Thhalv10014917m.g' => 'esa', 'Thhalv10014919m.g' => 'esa', 'Thhalv10015393m.g' => 'esa', 'Thhalv10016515m.g' => 'esa', 'Thhalv10029242m.g' => 'esa', 'TPR.G16654' => 'tpr', 'TPR.G20589' => 'tpr', 'TPR.G23029' => 'tpr', 'TPR.G27731' => 'tpr', 'TPR.G28889' => 'tpr', 'TPR.G28899' => 'tpr', 'TPR.G30846' => 'tpr', 'TPR.G5452' => 'tpr', 'TPR.G5713' => 'tpr', 'TPR.G9046' => 'tpr', 'TPR.G9061' => 'tpr', 'TWI09G1075' => 'twi', 'TWI12G0806' => 'twi', 'TWI18G0108' => 'twi', 'TWI53G1361' => 'twi', 'TWI73G0185' => 'twi', 'TWI73G0427' => 'twi', 'unitig_37.g12001' => 'ugi', 'unitig_747.g21660' => 'ugi', 'unitig_748.g7232' => 'ugi', 'unitig_748.g7315' => 'ugi', 'unitig_85.g27262' => 'ugi', 'unitig_92.g28220' => 'ugi', 'vmacro02632' => 'vma', 'vmacro08410' => 'vma', 'vmacro08411' => 'vma', 'vmacro15407' => 'vma', 'VMungo0251G3619' => 'vmu', 'VMungo0720G1204' => 'vmu', 'VMungo0720G1918' => 'vmu', 'VMungo0720G2387' => 'vmu', 'VMungo0720G2961' => 'vmu', 'VMungo1215G2154' => 'vmu', 'VMungo1383G2411' => 'vmu', 'Zm00001eb051130' => 'zma', 'Zm00001eb116830' => 'zma', 'Zm00001eb116850' => 'zma', 'Zm00001eb151740' => 'zma', 'Zm00001eb292360' => 'zma', 'Zm00001eb301640' => 'zma' ), 'gf_id' => 'HOM05D000856', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000856' ), 'data_identifier' => 'HOM05D000856', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000856', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p00010' => 'bna', 'A03p04160' => 'bna', 'A03p17160' => 'bna', 'A04p23370' => 'bna', 'A05p14860' => 'bna', 'A08p37020' => 'bna', 'A09p08050' => 'bna', 'A09p66800' => 'bna', 'A09p67940' => 'bna', 'A10p02680' => 'bna', 'A10p05320' => 'bna', 'Aa31LG1G20560' => 'aar', 'Aa31LG1G20610' => 'aar', 'Aa31LG1G7810' => 'aar', 'Aa31LG5G3590' => 'aar', 'Aa31LG5G6140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3819' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4683' => 'aag', 'Actinidia04480' => 'ach', 'Actinidia05466' => 'ach', 'Actinidia08445' => 'ach', 'Actinidia21170' => 'ach', 'Actinidia24812' => 'ach', 'Actinidia24951' => 'ach', 'Actinidia40088' => 'ach', 'Ah.02g111660' => 'amhyb', 'Ah.11g048900' => 'amhyb', 'Ah.11g049910' => 'amhyb', 'AL1G13870' => 'aly', 'AL1G13880' => 'aly', 'AL1G16760' => 'aly', 'AL390U10020' => 'aly', 'AL4G25520' => 'aly', 'AL6G19890' => 'aly', 'AL6G19900' => 'aly', 'AL6G19910' => 'aly', 'AL8G40100' => 'aly', 'Aqoxy2G03562' => 'aox', 'Aqoxy5G00316' => 'aox', 'Aqoxy5G00926' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1628KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1H403S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2FU6SJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.882I6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8YRY2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YN1SN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AF70II' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZA8L1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F916KL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHRD8H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KTZ8QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S22EMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8M29T' => 'arhy', 'AT1G04270' => 'ath', 'AT1G04280' => 'ath', 'AT1G06750' => 'ath', 'AT1G33850' => 'ath', 'AT2G30630' => 'ath', 'AT5G09490' => 'ath', 'AT5G09500' => 'ath', 'AT5G09510' => 'ath', 'AT5G43640' => 'ath', 'AT5G63070' => 'ath', 'ATR0605G315' => 'atr', 'Atru.chr11.175' => 'acertr', 'Atru.chr11.653' => 'acertr', 'Atru.chr3.1616' => 'acertr', 'Atru.chr4.2230' => 'acertr', 'Atru.chr4.2232' => 'acertr', 'Atru.chr5.1598' => 'acertr', 'Atru.chr5.1600' => 'acertr', 'Atru.chr5.2188' => 'acertr', 'AUR62008326' => 'cqu', 'AUR62011922' => 'cqu', 'AUR62011924' => 'cqu', 'AUR62021771' => 'cqu', 'AUR62032237' => 'cqu', 'AUR62032240' => 'cqu', 'BcaB01g05572' => 'bca', 'BcaB02g10337' => 'bca', 'BcaB04g19944' => 'bca', 'BcaB05g21548' => 'bca', 'BcaB05g21549' => 'bca', 'BcaB05g23227' => 'bca', 'BcaB06g26256' => 'bca', 'BcaB06g26257' => 'bca', 'BcaB06g28379' => 'bca', 'BcaC02g11159' => 'bca', 'BcaC03g13258' => 'bca', 'BcaC03g13259' => 'bca', 'BcaC05g24456' => 'bca', 'BcaC05g24457' => 'bca', 'BcaC07g36922' => 'bca', 'BcaC07g36923' => 'bca', 'BcaC07g42050' => 'bca', 'BcaC07g42176' => 'bca', 'BcaC07g42195' => 'bca', 'BcaC07g42196' => 'bca', 'BcaNung06674' => 'bca', 'BolC2t06351H' => 'bol', 'BolC2t06352H' => 'bol', 'BolC3t12993H' => 'bol', 'BolC4t23525H' => 'bol', 'BolC4t27475H' => 'bol', 'BolC5t29025H' => 'bol', 'BolC5t29026H' => 'bol', 'BolC8t46898H' => 'bol', 'BolC8t46899H' => 'bol', 'BolC8t52630H' => 'bol', 'BolC8t52765H' => 'bol', 'BolC9t53824H' => 'bol', 'BraA03t09760Z' => 'bra', 'BraA03t10990Z' => 'bra', 'BraA05t20413Z' => 'bra', 'BraA08t35602Z' => 'bra', 'BraA09t36458Z' => 'bra', 'BraA09t42018Z' => 'bra', 'BraA09t42129Z' => 'bra', 'BraA10t42536Z' => 'bra', 'BraA10t42537Z' => 'bra', 'C01p10690' => 'bna', 'C02p03890' => 'bna', 'C02p03900' => 'bna', 'C03p04620' => 'bna', 'C04p19870' => 'bna', 'C04p59670' => 'bna', 'C05p02460' => 'bna', 'C05p02470' => 'bna', 'C08p00980' => 'bna', 'C08p00990' => 'bna', 'C08p51030' => 'bna', 'C08p52360' => 'bna', 'C09p09120' => 'bna', 'CAN.G19.15' => 'can', 'CAN.G251.10' => 'can', 'CAN.G251.9' => 'can', 'CAN.G398.24' => 'can', 'CAN.G410.32' => 'can', 'CAN.G881.2' => 'can', 'CANSAT01G3025' => 'cansat', 'CANSAT78G1211' => 'cansat', 'CANSAT78G1218' => 'cansat', 'CANSAT78G1521' => 'cansat', 'CANSAT78G1670' => 'cansat', 'CARHR003600' => 'chi', 'CARHR003610' => 'chi', 'CARHR006290' => 'chi', 'CARHR006430' => 'chi', 'CARHR124110' => 'chi', 'CARHR203870' => 'chi', 'CARHR203880' => 'chi', 'CARHR203890' => 'chi', 'CARHR276880' => 'chi', 'Carub.0001s0346' => 'cru', 'Carub.0001s0347' => 'cru', 'Carub.0001s0607' => 'cru', 'Carub.0003s2768' => 'cru', 'Carub.0003s2769' => 'cru', 'Carub.0004s1178' => 'cru', 'Carub.0006s0806' => 'cru', 'Carub.0006s0807' => 'cru', 'Carub.0006s0808' => 'cru', 'Carub.0008s0501' => 'cru', 'Carub.0008s2379' => 'cru', 'Ca_08655_v3' => 'car', 'Ca_08922_v3' => 'car', 'Ca_08923_v3' => 'car', 'Ca_09119_v3' => 'car', 'Ca_09703_v3' => 'car', 'Ca_09705_v3' => 'car', 'Ca_09835_v3' => 'car', 'Ca_26403_v3' => 'car', 'Ca_30719_v3' => 'car', 'CBR_g17958' => 'cbr', 'CBR_g40516' => 'cbr', 'Cc00_g05350' => 'ccan', 'Cc01_g18690' => 'ccan', 'Cc03_g04830' => 'ccan', 'Cc03_g04850' => 'ccan', 'CDE02G4469' => 'cde', 'CDE06G0883' => 'cde', 'CDE06G1295' => 'cde', 'CDE06G1390' => 'cde', 'CDE07G0584' => 'cde', 'CDE07G1084' => 'cde', 'CDE08G1259' => 'cde', 'Cfa002341' => 'cfa', 'Cfa024337' => 'cfa', 'Ciclev10004749m.g' => 'ccl', 'Ciclev10006127m.g' => 'ccl', 'Ciclev10019720m.g' => 'ccl', 'Ciclev10022652m.g' => 'ccl', 'CiPaw.01G190400' => 'cil', 'CiPaw.01G190500' => 'cil', 'CiPaw.02G116400' => 'cil', 'CiPaw.02G116500' => 'cil', 'CiPaw.04G183000' => 'cil', 'CiPaw.04G183300' => 'cil', 'ClCG05G004610' => 'cla', 'ClCG05G004620' => 'cla', 'ClCG06G006730' => 'cla', 'ClCG06G006740' => 'cla', 'ClCG11G003690' => 'cla', 'COL.COLO4_08276' => 'col', 'COL.COLO4_08277' => 'col', 'COL.COLO4_15787' => 'col', 'COL.COLO4_15789' => 'col', 'Cpa.g.c44815' => 'cpa', 'Cpa.g.sc52.144' => 'cpa', 'Cpa.g.sc58.46' => 'cpa', 'Cpa.g.sc58.47' => 'cpa', 'Cre08.g360900' => 'cre', 'CsaV3_2G013030' => 'csa', 'CsaV3_2G013050' => 'csa', 'CsaV3_2G015620' => 'csa', 'CsaV3_3G012590' => 'csa', 'CsaV3_3G012600' => 'csa', 'CSS0001641' => 'camsi', 'CSS0008310' => 'camsi', 'CSS0013011' => 'camsi', 'CSS0017147' => 'camsi', 'CSS0022970' => 'camsi', 'CSS0025655' => 'camsi', 'CSS0028665' => 'camsi', 'CSS0029117' => 'camsi', 'CSS0032024' => 'camsi', 'CSS0039681' => 'camsi', 'CSS0046516' => 'camsi', 'CSS0050307' => 'camsi', 'DCAR_005871' => 'dca', 'DCAR_007342' => 'dca', 'DCAR_024228' => 'dca', 'DCAR_027277' => 'dca', 'DCAR_030718' => 'dca', 'Dinv20287' => 'din', 'Dinv22461' => 'din', 'Dinv22464' => 'din', 'Dinv29912' => 'din', 'Dinv29913' => 'din', 'Dinv34580' => 'din', 'Dinv34582' => 'din', 'Dinv44632' => 'din', 'Duzib052G0266' => 'dzi', 'Duzib133G0907' => 'dzi', 'Duzib133G1034' => 'dzi', 'Duzib138G0207' => 'dzi', 'Duzib138G0491' => 'dzi', 'Duzib151G0812' => 'dzi', 'Duzib151G1166' => 'dzi', 'Duzib168G0192' => 'dzi', 'Duzib211G0077' => 'dzi', 'Duzib212G0429' => 'dzi', 'Duzib212G0472' => 'dzi', 'ECA233G2617' => 'eca', 'ECA236G4188' => 'eca', 'ECA240G0936' => 'eca', 'ECA240G1129' => 'eca', 'ECA247G0623' => 'eca', 'EL10Ac5g10451' => 'bvu', 'EL10Ac5g10453' => 'bvu', 'EL10Ac5g10894' => 'bvu', 'Eucgr.H00192' => 'egr', 'Eucgr.H00193' => 'egr', 'Eucgr.H00194' => 'egr', 'Eucgr.J01562' => 'egr', 'Eucgr.K03301' => 'egr', 'FAN02G0632' => 'fan', 'FAN05G5378' => 'fan', 'FAN09G3247' => 'fan', 'FAN12G0435' => 'fan', 'FAN12G2426' => 'fan', 'FAN14G1707' => 'fan', 'FAN14G4725' => 'fan', 'FAN15G2071' => 'fan', 'FAN17G3065' => 'fan', 'FAN19G1376' => 'fan', 'FAN20G0354' => 'fan', 'FAN20G2429' => 'fan', 'FAN20G2658' => 'fan', 'FAN24G2343' => 'fan', 'FAN27G2362' => 'fan', 'FAN28G1765' => 'fan', 'FvH4_1g16020' => 'fve', 'FvH4_2g04890' => 'fve', 'FvH4_2g22270' => 'fve', 'FvH4_4g02630' => 'fve', 'FvH4_4g02640' => 'fve', 'FvH4_6g02650' => 'fve', 'Glyma.02G140600' => 'gma', 'Glyma.03G159900' => 'gma', 'Glyma.05G234800' => 'gma', 'Glyma.07G269600' => 'gma', 'Glyma.08G042300' => 'gma', 'Glyma.10G033500' => 'gma', 'Glyma.10G185200' => 'gma', 'Glyma.17G004300' => 'gma', 'Glyma.19G161900' => 'gma', 'Glyma.20G205100' => 'gma', 'Glyma.20G205200' => 'gma', 'Gohir.A01G139101' => 'ghi', 'Gohir.A02G035600' => 'ghi', 'Gohir.A02G117901' => 'ghi', 'Gohir.A07G210100' => 'ghi', 'Gohir.A07G210200' => 'ghi', 'Gohir.A08G061100' => 'ghi', 'Gohir.A09G223000' => 'ghi', 'Gohir.A09G223100' => 'ghi', 'Gohir.A10G113900' => 'ghi', 'Gohir.A10G114000' => 'ghi', 'Gohir.D02G042300' => 'ghi', 'Gohir.D07G216100' => 'ghi', 'Gohir.D07G216200' => 'ghi', 'Gohir.D08G070400' => 'ghi', 'Gohir.D09G225000' => 'ghi', 'Gohir.D09G225100' => 'ghi', 'Gohir.D10G152300' => 'ghi', 'Gohir.D10G153200' => 'ghi', 'Gohir.D11G133701' => 'ghi', 'Gorai.004G074100' => 'gra', 'Gorai.005G046800' => 'gra', 'Gorai.006G246500' => 'gra', 'Gorai.006G246600' => 'gra', 'Gorai.007G142900' => 'gra', 'Gorai.011G171000' => 'gra', 'Gorai.011G171100' => 'gra', 'Gorai.013G104300' => 'gra', 'Gorai.013G104400' => 'gra', 'GSVIVG01000754001' => 'vvi', 'GSVIVG01000756001' => 'vvi', 'GSVIVG01010903001' => 'vvi', 'GSVIVG01017623001' => 'vvi', 'GSVIVG01018113001' => 'vvi', 'GSVIVG01018116001' => 'vvi', 'GSVIVG01018118001' => 'vvi', 'HanXRQChr03g0076211' => 'han', 'HanXRQChr03g0092431' => 'han', 'HanXRQChr03g0092441' => 'han', 'HanXRQChr03g0092591' => 'han', 'HanXRQChr03g0092671' => 'han', 'HanXRQChr03g0092681' => 'han', 'HanXRQChr03g0092691' => 'han', 'HanXRQChr03g0092701' => 'han', 'HanXRQChr03g0092721' => 'han', 'HanXRQChr03g0092731' => 'han', 'HanXRQChr04g0113681' => 'han', 'HanXRQChr10g0281371' => 'han', 'HanXRQChr11g0337141' => 'han', 'HanXRQChr13g0424521' => 'han', 'HanXRQChr13g0424531' => 'han', 'HanXRQChr13g0424541' => 'han', 'HanXRQChr16g0498221' => 'han', 'Haze_04377' => 'cav', 'Haze_11298' => 'cav', 'Haze_24547' => 'cav', 'Haze_24550' => 'cav', 'Haze_26587' => 'cav', 'Hma1.2p1_0650F.1_g195410' => 'hma', 'Hma1.2p1_0893F.1_g233470' => 'hma', 'HPP92_006508' => 'vpl', 'HPP92_024780' => 'vpl', 'Hund02688' => 'sun', 'Hund09380' => 'sun', 'Hund09381' => 'sun', 'Hund09832' => 'sun', 'Hund09833' => 'sun', 'Hund11351' => 'sun', 'Hund11513' => 'sun', 'Lalb_Chr06g0162591' => 'lal', 'Lalb_Chr06g0162601' => 'lal', 'Lalb_Chr06g0169321' => 'lal', 'Lalb_Chr09g0330951' => 'lal', 'Lalb_Chr16g0387631' => 'lal', 'Lalb_Chr21g0306241' => 'lal', 'Lalb_Chr25g0290051' => 'lal', 'Lalb_Chr25g0290061' => 'lal', 'Lalb_Chr25g0290071' => 'lal', 'Lj1g0003876' => 'lja', 'Lj1P1207T36' => 'lonja', 'Lj2C1156G12' => 'lonja', 'Lj3A793G39' => 'lonja', 'Lj3C580G2' => 'lonja', 'Lj3C780G2' => 'lonja', 'Lj3C780T4' => 'lonja', 'Lj3C793G9' => 'lonja', 'Lj4g0012960' => 'lja', 'Lj5g0021252' => 'lja', 'Lj5g0021484' => 'lja', 'Lj5g0024528' => 'lja', 'Lj6A399T12' => 'lonja', 'Lj6A656G65' => 'lonja', 'Lsat_1_v5_gn_3_125500' => 'lsa', 'Lsat_1_v5_gn_3_125540' => 'lsa', 'Lsat_1_v5_gn_5_72701' => 'lsa', 'Lsat_1_v5_gn_8_91560' => 'lsa', 'Lsat_1_v5_gn_9_9640' => 'lsa', 'Manes.01G200600' => 'mes', 'Manes.01G200700' => 'mes', 'Manes.03G168900' => 'mes', 'Manes.03G169000' => 'mes', 'Manes.05G085801' => 'mes', 'Manes.05G086200' => 'mes', 'Manes.15G036700' => 'mes', 'Manes.15G036900' => 'mes', 'Mapoly0004s0172' => 'mpo', 'Mapoly0023s0001' => 'mpo', 'Mapoly0142s0012' => 'mpo', 'MBI01_g32854_MAGBIO' => 'mbi', 'MBI11_g24427_MAGBIO' => 'mbi', 'MBI11_g47319_MAGBIO' => 'mbi', 'MCO01G433' => 'mco', 'MD00G1187800' => 'mdo', 'MD04G1226500' => 'mdo', 'MD05G1203900' => 'mdo', 'MD10G1191100' => 'mdo', 'MD12G1243500' => 'mdo', 'MD13G1207000' => 'mdo', 'MD13G1207100' => 'mdo', 'MD16G1208600' => 'mdo', 'Medtr1g050352' => 'mtr', 'Medtr1g070385' => 'mtr', 'Medtr1g070450' => 'mtr', 'Medtr1g075200' => 'mtr', 'Medtr1g075250' => 'mtr', 'Medtr1g075260' => 'mtr', 'Medtr1g475250' => 'mtr', 'Medtr4g075450' => 'mtr', 'Medtr7g096300' => 'mtr', 'Medtr8g105110' => 'mtr', 'MELO3C006470.2' => 'cme', 'MELO3C006471.2' => 'cme', 'MELO3C020772.2' => 'cme', 'MELO3C026780.2' => 'cme', 'MELO3C026781.2' => 'cme', 'Migut.D00390' => 'egut', 'Migut.G00435' => 'egut', 'Migut.G00436' => 'egut', 'Migut.G00718' => 'egut', 'MSTRG.21891' => 'ama', 'MSTRG.26910' => 'ama', 'MSTRG.4099' => 'ama', 'MSTRG.9925' => 'ama', 'Nitab4.5_0000165g0010' => 'nta', 'Nitab4.5_0000209g0180' => 'nta', 'Nitab4.5_0000244g0440' => 'nta', 'Nitab4.5_0000525g0220' => 'nta', 'Nitab4.5_0001597g0020' => 'nta', 'Nitab4.5_0001878g0040' => 'nta', 'Nitab4.5_0001878g0060' => 'nta', 'Nitab4.5_0002838g0100' => 'nta', 'Nitab4.5_0002838g0120' => 'nta', 'Nitab4.5_0004798g0030' => 'nta', 'Nitab4.5_0005420g0010' => 'nta', 'Nitab4.5_0005507g0010' => 'nta', 'Nitab4.5_0005574g0020' => 'nta', 'Nitab4.5_0005838g0010' => 'nta', 'Nitab4.5_0010580g0020' => 'nta', 'Nn1g02599' => 'nnu', 'Nn1g02608' => 'nnu', 'Nn3g17742' => 'nnu', 'Nn3g19534' => 'nnu', 'Nn3g19535' => 'nnu', 'Oeu008790.1' => 'oeu', 'Oeu008792.1' => 'oeu', 'Oeu032590.1' => 'oeu', 'Oeu035349.1' => 'oeu', 'Oeu049791.1' => 'oeu', 'Os01g0774500' => 'osa', 'Os03g0628800' => 'osa', 'Os03g0798600' => 'osa', 'Os05g0508800' => 'osa', 'Peaxi162Scf00036g02018' => 'pax', 'Peaxi162Scf00578g00032' => 'pax', 'Peaxi162Scf00578g00317' => 'pax', 'Peaxi162Scf00785g00114' => 'pax', 'Peaxi162Scf00813g00119' => 'pax', 'Peaxi162Scf00906g00227' => 'pax', 'PGR004G0875' => 'pgr', 'PGR004G2424' => 'pgr', 'PGR031G1239' => 'pgr', 'PGR031G2474' => 'pgr', 'PGR044G0423' => 'pgr', 'PGSC0003DMG400001128' => 'stu', 'PGSC0003DMG400007336' => 'stu', 'PGSC0003DMG400016318' => 'stu', 'PGSC0003DMG400016319' => 'stu', 'PGSC0003DMG400018074' => 'stu', 'Phvul.001G157700' => 'pvu', 'Phvul.002G148550' => 'pvu', 'Phvul.002G320200' => 'pvu', 'Phvul.003G089200' => 'pvu', 'Phvul.007G126000' => 'pvu', 'Phvul.007G126100' => 'pvu', 'Phvul.007G178000' => 'pvu', 'Phvul.007G178200' => 'pvu', 'Potri.002G043000' => 'ptr', 'Potri.002G043200' => 'ptr', 'Potri.003G123750' => 'ptr', 'Potri.005G055401' => 'ptr', 'Potri.005G219700' => 'ptr', 'Potri.005G220000' => 'ptr', 'Potri.008G161901' => 'ptr', 'Potri.008G162000' => 'ptr', 'Potri.008G162400' => 'ptr', 'Potri.010G076900' => 'ptr', 'Pp3c12_9180' => 'ppa', 'Pp3c13_19770' => 'ppa', 'Pp3c14_22950' => 'ppa', 'Pp3c16_12160' => 'ppa', 'Pp3c27_7820' => 'ppa', 'Pp3c2_3490' => 'ppa', 'Pp3c3_23700' => 'ppa', 'Pp3c3_36520' => 'ppa', 'Pp3c4_15250' => 'ppa', 'PRCOL_00007002' => 'pco', 'Prupe.1G030600' => 'ppe', 'Prupe.1G030700' => 'ppe', 'Prupe.6G345200' => 'ppe', 'Prupe.8G230300' => 'ppe', 'Prupe.8G230500' => 'ppe', 'Psat3g059600' => 'psa', 'Psat5g200920' => 'psa', 'Psat6g056440' => 'psa', 'Psat6g057360' => 'psa', 'Psat6g134120' => 'psa', 'Psat6g134160' => 'psa', 'Psat7g008640' => 'psa', 'Psat7g185240' => 'psa', 'PSO017G1330' => 'pso', 'PSO063G6097' => 'pso', 'PSO170G0835' => 'pso', 'PSO170G2499' => 'pso', 'PSO210G5058' => 'pso', 'PSO210G6154' => 'pso', 'PSO585G0031' => 'pso', 'PSO832G0264' => 'pso', 'PSO832G4288' => 'pso', 'QL03p027355' => 'qlo', 'QL03p027430' => 'qlo', 'QL04p081380' => 'qlo', 'QL06p015642' => 'qlo', 'QL06p015650' => 'qlo', 'QL06p015686' => 'qlo', 'QL12p042927' => 'qlo', 'QL93p1863_0035' => 'qlo', 'RcHm_v2.0_Chr3g0450581' => 'rch', 'RcHm_v2.0_Chr4g0390371' => 'rch', 'RcHm_v2.0_Chr4g0390381' => 'rch', 'RcHm_v2.0_Chr4g0390491' => 'rch', 'RcHm_v2.0_Chr4g0390501' => 'rch', 'RcHm_v2.0_Chr6g0289231' => 'rch', 'Rhsim04G0190400' => 'rsi', 'Rhsim04G0190500' => 'rsi', 'Rhsim04G0190600' => 'rsi', 'Rhsim13G0031400' => 'rsi', 'Rhsim13G0165600' => 'rsi', 'RhsimUnG0114600' => 'rsi', 'RhsimUnG0114700' => 'rsi', 'Sabra02G0034800' => 'sbr', 'Sabra02G0035100' => 'sbr', 'Sabra05G0168600' => 'sbr', 'Sabra05G0168800' => 'sbr', 'Sabra08G0123700' => 'sbr', 'Sabra10G0031900' => 'sbr', 'Sabra13G0039000' => 'sbr', 'SalBow2G0782' => 'sbo', 'SalBow2G1403' => 'sbo', 'SalBow4G0074' => 'sbo', 'SalBow4G2635' => 'sbo', 'SalBow5G3010' => 'sbo', 'Sc05g0000870' => 'sci', 'Sc05g0000890' => 'sci', 'Sc13g0005000' => 'sci', 'Sc13g0005030' => 'sci', 'Sc19g0003790' => 'sci', 'Sc19g0003800' => 'sci', 'Sed0003467' => 'sed', 'Sed0009355' => 'sed', 'Sed0009894' => 'sed', 'Sed0011972' => 'sed', 'Sed0021483' => 'sed', 'Sed0021750' => 'sed', 'Sed0026279' => 'sed', 'SEGI_05312' => 'sgi', 'SEGI_10112' => 'sgi', 'SEGI_15835' => 'sgi', 'SEGI_30386' => 'sgi', 'SEGI_34122' => 'sgi', 'SEGI_35063' => 'sgi', 'SGA_v2.0_scaffold101G29794' => 'sas', 'SGA_v2.0_scaffold1G00573' => 'sas', 'SGA_v2.0_scaffold79G25637' => 'sas', 'SGA_v2.0_scaffold88G27283' => 'sas', 'SGA_v2.0_scaffold88G27285' => 'sas', 'SGA_v2.0_scaffold88G27331' => 'sas', 'SHI09937' => 'shi', 'SMO119G0302' => 'smo', 'SMO137G0231' => 'smo', 'SMO367G1151' => 'smo', 'Solyc02g082000.3' => 'sly', 'Solyc06g031670.3' => 'sly', 'Solyc06g053810.3' => 'sly', 'Solyc07g025457.1' => 'sly', 'Solyc08g059740.1' => 'sly', 'Solyc08g059750.3' => 'sly', 'Solyc09g083370.3' => 'sly', 'Solyc12g038950.3' => 'sly', 'Sopen02g026630' => 'spe', 'Sopen06g018930' => 'spe', 'Sopen06g018940' => 'spe', 'Sopen08g009460' => 'spe', 'Sopen09g032290' => 'spe', 'Sp1g03080' => 'spa', 'Sp1g03090' => 'spa', 'Sp1g05480' => 'spa', 'Sp2g07860' => 'spa', 'Sp2g08430' => 'spa', 'Sp2g08440' => 'spa', 'Sp2g26200' => 'spa', 'Sp4g13170' => 'spa', 'Sp6g33840' => 'spa', 'SpUn1204_0010' => 'spa', 'TAR365G0908' => 'tar', 'TAR381G1270' => 'tar', 'TAR381G1651' => 'tar', 'TAR625G1131' => 'tar', 'TAR633G0962' => 'tar', 'TAR633G1729' => 'tar', 'TAR633G1864' => 'tar', 'TAR636G0221' => 'tar', 'TAR636G0314' => 'tar', 'TAR636G3202' => 'tar', 'THA.LOC104800805' => 'tha', 'THA.LOC104801096' => 'tha', 'THA.LOC104801555' => 'tha', 'THA.LOC104808491' => 'tha', 'THA.LOC104808595' => 'tha', 'THA.LOC104815985' => 'tha', 'THA.LOC104822250' => 'tha', 'THA.LOC104826071' => 'tha', 'Thecc.01G265200' => 'tca', 'Thecc.01G265300' => 'tca', 'Thecc.01G265700' => 'tca', 'Thecc.03G109100' => 'tca', 'Thecc.04G245900' => 'tca', 'Thecc.04G246000' => 'tca', 'Thhalv10003334m.g' => 'esa', 'Thhalv10005508m.g' => 'esa', 'Thhalv10005643m.g' => 'esa', 'Thhalv10007316m.g' => 'esa', 'Thhalv10009006m.g' => 'esa', 'Thhalv10009309m.g' => 'esa', 'Thhalv10014917m.g' => 'esa', 'Thhalv10014919m.g' => 'esa', 'Thhalv10015393m.g' => 'esa', 'Thhalv10016515m.g' => 'esa', 'Thhalv10029242m.g' => 'esa', 'TPR.G16654' => 'tpr', 'TPR.G20589' => 'tpr', 'TPR.G23029' => 'tpr', 'TPR.G27731' => 'tpr', 'TPR.G28889' => 'tpr', 'TPR.G28899' => 'tpr', 'TPR.G30846' => 'tpr', 'TPR.G5452' => 'tpr', 'TPR.G5713' => 'tpr', 'TPR.G9046' => 'tpr', 'TPR.G9061' => 'tpr', 'TWI09G1075' => 'twi', 'TWI12G0806' => 'twi', 'TWI18G0108' => 'twi', 'TWI53G1361' => 'twi', 'TWI73G0185' => 'twi', 'TWI73G0427' => 'twi', 'unitig_37.g12001' => 'ugi', 'unitig_747.g21660' => 'ugi', 'unitig_748.g7232' => 'ugi', 'unitig_748.g7315' => 'ugi', 'unitig_85.g27262' => 'ugi', 'unitig_92.g28220' => 'ugi', 'vmacro02632' => 'vma', 'vmacro08410' => 'vma', 'vmacro08411' => 'vma', 'vmacro15407' => 'vma', 'VMungo0251G3619' => 'vmu', 'VMungo0720G1204' => 'vmu', 'VMungo0720G1918' => 'vmu', 'VMungo0720G2387' => 'vmu', 'VMungo0720G2961' => 'vmu', 'VMungo1215G2154' => 'vmu', 'VMungo1383G2411' => 'vmu', 'Zm00001eb051130' => 'zma', 'Zm00001eb116830' => 'zma', 'Zm00001eb116850' => 'zma', 'Zm00001eb151740' => 'zma', 'Zm00001eb292360' => 'zma', 'Zm00001eb301640' => 'zma' ) $gf_id = 'HOM05D000856' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000856' ) $data_identifier = 'HOM05D000856' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 13, 'ath' => (int) 10, 'atr' => (int) 1, 'acertr' => (int) 8, 'cqu' => (int) 6, 'bca' => (int) 21, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 11, 'car' => (int) 9, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 8, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 5, 'fan' => (int) 16, 'fve' => (int) 6, 'gma' => (int) 11, 'ghi' => (int) 19, 'gra' => (int) 9, 'vvi' => (int) 7, 'han' => (int) 17, 'cav' => (int) 5, 'hma' => (int) 2, 'vpl' => (int) 2, 'sun' => (int) 7, 'lal' => (int) 9, 'lja' => (int) 5, 'lonja' => (int) 9, 'lsa' => (int) 5, 'mes' => (int) 8, 'mpo' => (int) 3, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 10, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 15, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 9, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 9, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 6, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 5, 'spa' => (int) 10, 'tar' => (int) 10, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 11, 'tpr' => (int) 11, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 4, 'vmu' => (int) 7, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb301640' $species_info = array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ) $local_species = 'aox' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000856', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p00010' => 'bna', 'A03p04160' => 'bna', 'A03p17160' => 'bna', 'A04p23370' => 'bna', 'A05p14860' => 'bna', 'A08p37020' => 'bna', 'A09p08050' => 'bna', 'A09p66800' => 'bna', 'A09p67940' => 'bna', 'A10p02680' => 'bna', 'A10p05320' => 'bna', 'Aa31LG1G20560' => 'aar', 'Aa31LG1G20610' => 'aar', 'Aa31LG1G7810' => 'aar', 'Aa31LG5G3590' => 'aar', 'Aa31LG5G6140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3819' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4683' => 'aag', 'Actinidia04480' => 'ach', 'Actinidia05466' => 'ach', 'Actinidia08445' => 'ach', 'Actinidia21170' => 'ach', 'Actinidia24812' => 'ach', 'Actinidia24951' => 'ach', 'Actinidia40088' => 'ach', 'Ah.02g111660' => 'amhyb', 'Ah.11g048900' => 'amhyb', 'Ah.11g049910' => 'amhyb', 'AL1G13870' => 'aly', 'AL1G13880' => 'aly', 'AL1G16760' => 'aly', 'AL390U10020' => 'aly', 'AL4G25520' => 'aly', 'AL6G19890' => 'aly', 'AL6G19900' => 'aly', 'AL6G19910' => 'aly', 'AL8G40100' => 'aly', 'Aqoxy2G03562' => 'aox', 'Aqoxy5G00316' => 'aox', 'Aqoxy5G00926' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1628KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1H403S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2FU6SJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.882I6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8YRY2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YN1SN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AF70II' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZA8L1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F916KL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHRD8H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KTZ8QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S22EMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8M29T' => 'arhy', 'AT1G04270' => 'ath', 'AT1G04280' => 'ath', 'AT1G06750' => 'ath', 'AT1G33850' => 'ath', 'AT2G30630' => 'ath', 'AT5G09490' => 'ath', 'AT5G09500' => 'ath', 'AT5G09510' => 'ath', 'AT5G43640' => 'ath', 'AT5G63070' => 'ath', 'ATR0605G315' => 'atr', 'Atru.chr11.175' => 'acertr', 'Atru.chr11.653' => 'acertr', 'Atru.chr3.1616' => 'acertr', 'Atru.chr4.2230' => 'acertr', 'Atru.chr4.2232' => 'acertr', 'Atru.chr5.1598' => 'acertr', 'Atru.chr5.1600' => 'acertr', 'Atru.chr5.2188' => 'acertr', 'AUR62008326' => 'cqu', 'AUR62011922' => 'cqu', 'AUR62011924' => 'cqu', 'AUR62021771' => 'cqu', 'AUR62032237' => 'cqu', 'AUR62032240' => 'cqu', 'BcaB01g05572' => 'bca', 'BcaB02g10337' => 'bca', 'BcaB04g19944' => 'bca', 'BcaB05g21548' => 'bca', 'BcaB05g21549' => 'bca', 'BcaB05g23227' => 'bca', 'BcaB06g26256' => 'bca', 'BcaB06g26257' => 'bca', 'BcaB06g28379' => 'bca', 'BcaC02g11159' => 'bca', 'BcaC03g13258' => 'bca', 'BcaC03g13259' => 'bca', 'BcaC05g24456' => 'bca', 'BcaC05g24457' => 'bca', 'BcaC07g36922' => 'bca', 'BcaC07g36923' => 'bca', 'BcaC07g42050' => 'bca', 'BcaC07g42176' => 'bca', 'BcaC07g42195' => 'bca', 'BcaC07g42196' => 'bca', 'BcaNung06674' => 'bca', 'BolC2t06351H' => 'bol', 'BolC2t06352H' => 'bol', 'BolC3t12993H' => 'bol', 'BolC4t23525H' => 'bol', 'BolC4t27475H' => 'bol', 'BolC5t29025H' => 'bol', 'BolC5t29026H' => 'bol', 'BolC8t46898H' => 'bol', 'BolC8t46899H' => 'bol', 'BolC8t52630H' => 'bol', 'BolC8t52765H' => 'bol', 'BolC9t53824H' => 'bol', 'BraA03t09760Z' => 'bra', 'BraA03t10990Z' => 'bra', 'BraA05t20413Z' => 'bra', 'BraA08t35602Z' => 'bra', 'BraA09t36458Z' => 'bra', 'BraA09t42018Z' => 'bra', 'BraA09t42129Z' => 'bra', 'BraA10t42536Z' => 'bra', 'BraA10t42537Z' => 'bra', 'C01p10690' => 'bna', 'C02p03890' => 'bna', 'C02p03900' => 'bna', 'C03p04620' => 'bna', 'C04p19870' => 'bna', 'C04p59670' => 'bna', 'C05p02460' => 'bna', 'C05p02470' => 'bna', 'C08p00980' => 'bna', 'C08p00990' => 'bna', 'C08p51030' => 'bna', 'C08p52360' => 'bna', 'C09p09120' => 'bna', 'CAN.G19.15' => 'can', 'CAN.G251.10' => 'can', 'CAN.G251.9' => 'can', 'CAN.G398.24' => 'can', 'CAN.G410.32' => 'can', 'CAN.G881.2' => 'can', 'CANSAT01G3025' => 'cansat', 'CANSAT78G1211' => 'cansat', 'CANSAT78G1218' => 'cansat', 'CANSAT78G1521' => 'cansat', 'CANSAT78G1670' => 'cansat', 'CARHR003600' => 'chi', 'CARHR003610' => 'chi', 'CARHR006290' => 'chi', 'CARHR006430' => 'chi', 'CARHR124110' => 'chi', 'CARHR203870' => 'chi', 'CARHR203880' => 'chi', 'CARHR203890' => 'chi', 'CARHR276880' => 'chi', 'Carub.0001s0346' => 'cru', 'Carub.0001s0347' => 'cru', 'Carub.0001s0607' => 'cru', 'Carub.0003s2768' => 'cru', 'Carub.0003s2769' => 'cru', 'Carub.0004s1178' => 'cru', 'Carub.0006s0806' => 'cru', 'Carub.0006s0807' => 'cru', 'Carub.0006s0808' => 'cru', 'Carub.0008s0501' => 'cru', 'Carub.0008s2379' => 'cru', 'Ca_08655_v3' => 'car', 'Ca_08922_v3' => 'car', 'Ca_08923_v3' => 'car', 'Ca_09119_v3' => 'car', 'Ca_09703_v3' => 'car', 'Ca_09705_v3' => 'car', 'Ca_09835_v3' => 'car', 'Ca_26403_v3' => 'car', 'Ca_30719_v3' => 'car', 'CBR_g17958' => 'cbr', 'CBR_g40516' => 'cbr', 'Cc00_g05350' => 'ccan', 'Cc01_g18690' => 'ccan', 'Cc03_g04830' => 'ccan', 'Cc03_g04850' => 'ccan', 'CDE02G4469' => 'cde', 'CDE06G0883' => 'cde', 'CDE06G1295' => 'cde', 'CDE06G1390' => 'cde', 'CDE07G0584' => 'cde', 'CDE07G1084' => 'cde', 'CDE08G1259' => 'cde', 'Cfa002341' => 'cfa', 'Cfa024337' => 'cfa', 'Ciclev10004749m.g' => 'ccl', 'Ciclev10006127m.g' => 'ccl', 'Ciclev10019720m.g' => 'ccl', 'Ciclev10022652m.g' => 'ccl', 'CiPaw.01G190400' => 'cil', 'CiPaw.01G190500' => 'cil', 'CiPaw.02G116400' => 'cil', 'CiPaw.02G116500' => 'cil', 'CiPaw.04G183000' => 'cil', 'CiPaw.04G183300' => 'cil', 'ClCG05G004610' => 'cla', 'ClCG05G004620' => 'cla', 'ClCG06G006730' => 'cla', 'ClCG06G006740' => 'cla', 'ClCG11G003690' => 'cla', 'COL.COLO4_08276' => 'col', 'COL.COLO4_08277' => 'col', 'COL.COLO4_15787' => 'col', 'COL.COLO4_15789' => 'col', 'Cpa.g.c44815' => 'cpa', 'Cpa.g.sc52.144' => 'cpa', 'Cpa.g.sc58.46' => 'cpa', 'Cpa.g.sc58.47' => 'cpa', 'Cre08.g360900' => 'cre', 'CsaV3_2G013030' => 'csa', 'CsaV3_2G013050' => 'csa', 'CsaV3_2G015620' => 'csa', 'CsaV3_3G012590' => 'csa', 'CsaV3_3G012600' => 'csa', 'CSS0001641' => 'camsi', 'CSS0008310' => 'camsi', 'CSS0013011' => 'camsi', 'CSS0017147' => 'camsi', 'CSS0022970' => 'camsi', 'CSS0025655' => 'camsi', 'CSS0028665' => 'camsi', 'CSS0029117' => 'camsi', 'CSS0032024' => 'camsi', 'CSS0039681' => 'camsi', 'CSS0046516' => 'camsi', 'CSS0050307' => 'camsi', 'DCAR_005871' => 'dca', 'DCAR_007342' => 'dca', 'DCAR_024228' => 'dca', 'DCAR_027277' => 'dca', 'DCAR_030718' => 'dca', 'Dinv20287' => 'din', 'Dinv22461' => 'din', 'Dinv22464' => 'din', 'Dinv29912' => 'din', 'Dinv29913' => 'din', 'Dinv34580' => 'din', 'Dinv34582' => 'din', 'Dinv44632' => 'din', 'Duzib052G0266' => 'dzi', 'Duzib133G0907' => 'dzi', 'Duzib133G1034' => 'dzi', 'Duzib138G0207' => 'dzi', 'Duzib138G0491' => 'dzi', 'Duzib151G0812' => 'dzi', 'Duzib151G1166' => 'dzi', 'Duzib168G0192' => 'dzi', 'Duzib211G0077' => 'dzi', 'Duzib212G0429' => 'dzi', 'Duzib212G0472' => 'dzi', 'ECA233G2617' => 'eca', 'ECA236G4188' => 'eca', 'ECA240G0936' => 'eca', 'ECA240G1129' => 'eca', 'ECA247G0623' => 'eca', 'EL10Ac5g10451' => 'bvu', 'EL10Ac5g10453' => 'bvu', 'EL10Ac5g10894' => 'bvu', 'Eucgr.H00192' => 'egr', 'Eucgr.H00193' => 'egr', 'Eucgr.H00194' => 'egr', 'Eucgr.J01562' => 'egr', 'Eucgr.K03301' => 'egr', 'FAN02G0632' => 'fan', 'FAN05G5378' => 'fan', 'FAN09G3247' => 'fan', 'FAN12G0435' => 'fan', 'FAN12G2426' => 'fan', 'FAN14G1707' => 'fan', 'FAN14G4725' => 'fan', 'FAN15G2071' => 'fan', 'FAN17G3065' => 'fan', 'FAN19G1376' => 'fan', 'FAN20G0354' => 'fan', 'FAN20G2429' => 'fan', 'FAN20G2658' => 'fan', 'FAN24G2343' => 'fan', 'FAN27G2362' => 'fan', 'FAN28G1765' => 'fan', 'FvH4_1g16020' => 'fve', 'FvH4_2g04890' => 'fve', 'FvH4_2g22270' => 'fve', 'FvH4_4g02630' => 'fve', 'FvH4_4g02640' => 'fve', 'FvH4_6g02650' => 'fve', 'Glyma.02G140600' => 'gma', 'Glyma.03G159900' => 'gma', 'Glyma.05G234800' => 'gma', 'Glyma.07G269600' => 'gma', 'Glyma.08G042300' => 'gma', 'Glyma.10G033500' => 'gma', 'Glyma.10G185200' => 'gma', 'Glyma.17G004300' => 'gma', 'Glyma.19G161900' => 'gma', 'Glyma.20G205100' => 'gma', 'Glyma.20G205200' => 'gma', 'Gohir.A01G139101' => 'ghi', 'Gohir.A02G035600' => 'ghi', 'Gohir.A02G117901' => 'ghi', 'Gohir.A07G210100' => 'ghi', 'Gohir.A07G210200' => 'ghi', 'Gohir.A08G061100' => 'ghi', 'Gohir.A09G223000' => 'ghi', 'Gohir.A09G223100' => 'ghi', 'Gohir.A10G113900' => 'ghi', 'Gohir.A10G114000' => 'ghi', 'Gohir.D02G042300' => 'ghi', 'Gohir.D07G216100' => 'ghi', 'Gohir.D07G216200' => 'ghi', 'Gohir.D08G070400' => 'ghi', 'Gohir.D09G225000' => 'ghi', 'Gohir.D09G225100' => 'ghi', 'Gohir.D10G152300' => 'ghi', 'Gohir.D10G153200' => 'ghi', 'Gohir.D11G133701' => 'ghi', 'Gorai.004G074100' => 'gra', 'Gorai.005G046800' => 'gra', 'Gorai.006G246500' => 'gra', 'Gorai.006G246600' => 'gra', 'Gorai.007G142900' => 'gra', 'Gorai.011G171000' => 'gra', 'Gorai.011G171100' => 'gra', 'Gorai.013G104300' => 'gra', 'Gorai.013G104400' => 'gra', 'GSVIVG01000754001' => 'vvi', 'GSVIVG01000756001' => 'vvi', 'GSVIVG01010903001' => 'vvi', 'GSVIVG01017623001' => 'vvi', 'GSVIVG01018113001' => 'vvi', 'GSVIVG01018116001' => 'vvi', 'GSVIVG01018118001' => 'vvi', 'HanXRQChr03g0076211' => 'han', 'HanXRQChr03g0092431' => 'han', 'HanXRQChr03g0092441' => 'han', 'HanXRQChr03g0092591' => 'han', 'HanXRQChr03g0092671' => 'han', 'HanXRQChr03g0092681' => 'han', 'HanXRQChr03g0092691' => 'han', 'HanXRQChr03g0092701' => 'han', 'HanXRQChr03g0092721' => 'han', 'HanXRQChr03g0092731' => 'han', 'HanXRQChr04g0113681' => 'han', 'HanXRQChr10g0281371' => 'han', 'HanXRQChr11g0337141' => 'han', 'HanXRQChr13g0424521' => 'han', 'HanXRQChr13g0424531' => 'han', 'HanXRQChr13g0424541' => 'han', 'HanXRQChr16g0498221' => 'han', 'Haze_04377' => 'cav', 'Haze_11298' => 'cav', 'Haze_24547' => 'cav', 'Haze_24550' => 'cav', 'Haze_26587' => 'cav', 'Hma1.2p1_0650F.1_g195410' => 'hma', 'Hma1.2p1_0893F.1_g233470' => 'hma', 'HPP92_006508' => 'vpl', 'HPP92_024780' => 'vpl', 'Hund02688' => 'sun', 'Hund09380' => 'sun', 'Hund09381' => 'sun', 'Hund09832' => 'sun', 'Hund09833' => 'sun', 'Hund11351' => 'sun', 'Hund11513' => 'sun', 'Lalb_Chr06g0162591' => 'lal', 'Lalb_Chr06g0162601' => 'lal', 'Lalb_Chr06g0169321' => 'lal', 'Lalb_Chr09g0330951' => 'lal', 'Lalb_Chr16g0387631' => 'lal', 'Lalb_Chr21g0306241' => 'lal', 'Lalb_Chr25g0290051' => 'lal', 'Lalb_Chr25g0290061' => 'lal', 'Lalb_Chr25g0290071' => 'lal', 'Lj1g0003876' => 'lja', 'Lj1P1207T36' => 'lonja', 'Lj2C1156G12' => 'lonja', 'Lj3A793G39' => 'lonja', 'Lj3C580G2' => 'lonja', 'Lj3C780G2' => 'lonja', 'Lj3C780T4' => 'lonja', 'Lj3C793G9' => 'lonja', 'Lj4g0012960' => 'lja', 'Lj5g0021252' => 'lja', 'Lj5g0021484' => 'lja', 'Lj5g0024528' => 'lja', 'Lj6A399T12' => 'lonja', 'Lj6A656G65' => 'lonja', 'Lsat_1_v5_gn_3_125500' => 'lsa', 'Lsat_1_v5_gn_3_125540' => 'lsa', 'Lsat_1_v5_gn_5_72701' => 'lsa', 'Lsat_1_v5_gn_8_91560' => 'lsa', 'Lsat_1_v5_gn_9_9640' => 'lsa', 'Manes.01G200600' => 'mes', 'Manes.01G200700' => 'mes', 'Manes.03G168900' => 'mes', 'Manes.03G169000' => 'mes', 'Manes.05G085801' => 'mes', 'Manes.05G086200' => 'mes', 'Manes.15G036700' => 'mes', 'Manes.15G036900' => 'mes', 'Mapoly0004s0172' => 'mpo', 'Mapoly0023s0001' => 'mpo', 'Mapoly0142s0012' => 'mpo', 'MBI01_g32854_MAGBIO' => 'mbi', 'MBI11_g24427_MAGBIO' => 'mbi', 'MBI11_g47319_MAGBIO' => 'mbi', 'MCO01G433' => 'mco', 'MD00G1187800' => 'mdo', 'MD04G1226500' => 'mdo', 'MD05G1203900' => 'mdo', 'MD10G1191100' => 'mdo', 'MD12G1243500' => 'mdo', 'MD13G1207000' => 'mdo', 'MD13G1207100' => 'mdo', 'MD16G1208600' => 'mdo', 'Medtr1g050352' => 'mtr', 'Medtr1g070385' => 'mtr', 'Medtr1g070450' => 'mtr', 'Medtr1g075200' => 'mtr', 'Medtr1g075250' => 'mtr', 'Medtr1g075260' => 'mtr', 'Medtr1g475250' => 'mtr', 'Medtr4g075450' => 'mtr', 'Medtr7g096300' => 'mtr', 'Medtr8g105110' => 'mtr', 'MELO3C006470.2' => 'cme', 'MELO3C006471.2' => 'cme', 'MELO3C020772.2' => 'cme', 'MELO3C026780.2' => 'cme', 'MELO3C026781.2' => 'cme', 'Migut.D00390' => 'egut', 'Migut.G00435' => 'egut', 'Migut.G00436' => 'egut', 'Migut.G00718' => 'egut', 'MSTRG.21891' => 'ama', 'MSTRG.26910' => 'ama', 'MSTRG.4099' => 'ama', 'MSTRG.9925' => 'ama', 'Nitab4.5_0000165g0010' => 'nta', 'Nitab4.5_0000209g0180' => 'nta', 'Nitab4.5_0000244g0440' => 'nta', 'Nitab4.5_0000525g0220' => 'nta', 'Nitab4.5_0001597g0020' => 'nta', 'Nitab4.5_0001878g0040' => 'nta', 'Nitab4.5_0001878g0060' => 'nta', 'Nitab4.5_0002838g0100' => 'nta', 'Nitab4.5_0002838g0120' => 'nta', 'Nitab4.5_0004798g0030' => 'nta', 'Nitab4.5_0005420g0010' => 'nta', 'Nitab4.5_0005507g0010' => 'nta', 'Nitab4.5_0005574g0020' => 'nta', 'Nitab4.5_0005838g0010' => 'nta', 'Nitab4.5_0010580g0020' => 'nta', 'Nn1g02599' => 'nnu', 'Nn1g02608' => 'nnu', 'Nn3g17742' => 'nnu', 'Nn3g19534' => 'nnu', 'Nn3g19535' => 'nnu', 'Oeu008790.1' => 'oeu', 'Oeu008792.1' => 'oeu', 'Oeu032590.1' => 'oeu', 'Oeu035349.1' => 'oeu', 'Oeu049791.1' => 'oeu', 'Os01g0774500' => 'osa', 'Os03g0628800' => 'osa', 'Os03g0798600' => 'osa', 'Os05g0508800' => 'osa', 'Peaxi162Scf00036g02018' => 'pax', 'Peaxi162Scf00578g00032' => 'pax', 'Peaxi162Scf00578g00317' => 'pax', 'Peaxi162Scf00785g00114' => 'pax', 'Peaxi162Scf00813g00119' => 'pax', 'Peaxi162Scf00906g00227' => 'pax', 'PGR004G0875' => 'pgr', 'PGR004G2424' => 'pgr', 'PGR031G1239' => 'pgr', 'PGR031G2474' => 'pgr', 'PGR044G0423' => 'pgr', 'PGSC0003DMG400001128' => 'stu', 'PGSC0003DMG400007336' => 'stu', 'PGSC0003DMG400016318' => 'stu', 'PGSC0003DMG400016319' => 'stu', 'PGSC0003DMG400018074' => 'stu', 'Phvul.001G157700' => 'pvu', 'Phvul.002G148550' => 'pvu', 'Phvul.002G320200' => 'pvu', 'Phvul.003G089200' => 'pvu', 'Phvul.007G126000' => 'pvu', 'Phvul.007G126100' => 'pvu', 'Phvul.007G178000' => 'pvu', 'Phvul.007G178200' => 'pvu', 'Potri.002G043000' => 'ptr', 'Potri.002G043200' => 'ptr', 'Potri.003G123750' => 'ptr', 'Potri.005G055401' => 'ptr', 'Potri.005G219700' => 'ptr', 'Potri.005G220000' => 'ptr', 'Potri.008G161901' => 'ptr', 'Potri.008G162000' => 'ptr', 'Potri.008G162400' => 'ptr', 'Potri.010G076900' => 'ptr', 'Pp3c12_9180' => 'ppa', 'Pp3c13_19770' => 'ppa', 'Pp3c14_22950' => 'ppa', 'Pp3c16_12160' => 'ppa', 'Pp3c27_7820' => 'ppa', 'Pp3c2_3490' => 'ppa', 'Pp3c3_23700' => 'ppa', 'Pp3c3_36520' => 'ppa', 'Pp3c4_15250' => 'ppa', 'PRCOL_00007002' => 'pco', 'Prupe.1G030600' => 'ppe', 'Prupe.1G030700' => 'ppe', 'Prupe.6G345200' => 'ppe', 'Prupe.8G230300' => 'ppe', 'Prupe.8G230500' => 'ppe', 'Psat3g059600' => 'psa', 'Psat5g200920' => 'psa', 'Psat6g056440' => 'psa', 'Psat6g057360' => 'psa', 'Psat6g134120' => 'psa', 'Psat6g134160' => 'psa', 'Psat7g008640' => 'psa', 'Psat7g185240' => 'psa', 'PSO017G1330' => 'pso', 'PSO063G6097' => 'pso', 'PSO170G0835' => 'pso', 'PSO170G2499' => 'pso', 'PSO210G5058' => 'pso', 'PSO210G6154' => 'pso', 'PSO585G0031' => 'pso', 'PSO832G0264' => 'pso', 'PSO832G4288' => 'pso', 'QL03p027355' => 'qlo', 'QL03p027430' => 'qlo', 'QL04p081380' => 'qlo', 'QL06p015642' => 'qlo', 'QL06p015650' => 'qlo', 'QL06p015686' => 'qlo', 'QL12p042927' => 'qlo', 'QL93p1863_0035' => 'qlo', 'RcHm_v2.0_Chr3g0450581' => 'rch', 'RcHm_v2.0_Chr4g0390371' => 'rch', 'RcHm_v2.0_Chr4g0390381' => 'rch', 'RcHm_v2.0_Chr4g0390491' => 'rch', 'RcHm_v2.0_Chr4g0390501' => 'rch', 'RcHm_v2.0_Chr6g0289231' => 'rch', 'Rhsim04G0190400' => 'rsi', 'Rhsim04G0190500' => 'rsi', 'Rhsim04G0190600' => 'rsi', 'Rhsim13G0031400' => 'rsi', 'Rhsim13G0165600' => 'rsi', 'RhsimUnG0114600' => 'rsi', 'RhsimUnG0114700' => 'rsi', 'Sabra02G0034800' => 'sbr', 'Sabra02G0035100' => 'sbr', 'Sabra05G0168600' => 'sbr', 'Sabra05G0168800' => 'sbr', 'Sabra08G0123700' => 'sbr', 'Sabra10G0031900' => 'sbr', 'Sabra13G0039000' => 'sbr', 'SalBow2G0782' => 'sbo', 'SalBow2G1403' => 'sbo', 'SalBow4G0074' => 'sbo', 'SalBow4G2635' => 'sbo', 'SalBow5G3010' => 'sbo', 'Sc05g0000870' => 'sci', 'Sc05g0000890' => 'sci', 'Sc13g0005000' => 'sci', 'Sc13g0005030' => 'sci', 'Sc19g0003790' => 'sci', 'Sc19g0003800' => 'sci', 'Sed0003467' => 'sed', 'Sed0009355' => 'sed', 'Sed0009894' => 'sed', 'Sed0011972' => 'sed', 'Sed0021483' => 'sed', 'Sed0021750' => 'sed', 'Sed0026279' => 'sed', 'SEGI_05312' => 'sgi', 'SEGI_10112' => 'sgi', 'SEGI_15835' => 'sgi', 'SEGI_30386' => 'sgi', 'SEGI_34122' => 'sgi', 'SEGI_35063' => 'sgi', 'SGA_v2.0_scaffold101G29794' => 'sas', 'SGA_v2.0_scaffold1G00573' => 'sas', 'SGA_v2.0_scaffold79G25637' => 'sas', 'SGA_v2.0_scaffold88G27283' => 'sas', 'SGA_v2.0_scaffold88G27285' => 'sas', 'SGA_v2.0_scaffold88G27331' => 'sas', 'SHI09937' => 'shi', 'SMO119G0302' => 'smo', 'SMO137G0231' => 'smo', 'SMO367G1151' => 'smo', 'Solyc02g082000.3' => 'sly', 'Solyc06g031670.3' => 'sly', 'Solyc06g053810.3' => 'sly', 'Solyc07g025457.1' => 'sly', 'Solyc08g059740.1' => 'sly', 'Solyc08g059750.3' => 'sly', 'Solyc09g083370.3' => 'sly', 'Solyc12g038950.3' => 'sly', 'Sopen02g026630' => 'spe', 'Sopen06g018930' => 'spe', 'Sopen06g018940' => 'spe', 'Sopen08g009460' => 'spe', 'Sopen09g032290' => 'spe', 'Sp1g03080' => 'spa', 'Sp1g03090' => 'spa', 'Sp1g05480' => 'spa', 'Sp2g07860' => 'spa', 'Sp2g08430' => 'spa', 'Sp2g08440' => 'spa', 'Sp2g26200' => 'spa', 'Sp4g13170' => 'spa', 'Sp6g33840' => 'spa', 'SpUn1204_0010' => 'spa', 'TAR365G0908' => 'tar', 'TAR381G1270' => 'tar', 'TAR381G1651' => 'tar', 'TAR625G1131' => 'tar', 'TAR633G0962' => 'tar', 'TAR633G1729' => 'tar', 'TAR633G1864' => 'tar', 'TAR636G0221' => 'tar', 'TAR636G0314' => 'tar', 'TAR636G3202' => 'tar', 'THA.LOC104800805' => 'tha', 'THA.LOC104801096' => 'tha', 'THA.LOC104801555' => 'tha', 'THA.LOC104808491' => 'tha', 'THA.LOC104808595' => 'tha', 'THA.LOC104815985' => 'tha', 'THA.LOC104822250' => 'tha', 'THA.LOC104826071' => 'tha', 'Thecc.01G265200' => 'tca', 'Thecc.01G265300' => 'tca', 'Thecc.01G265700' => 'tca', 'Thecc.03G109100' => 'tca', 'Thecc.04G245900' => 'tca', 'Thecc.04G246000' => 'tca', 'Thhalv10003334m.g' => 'esa', 'Thhalv10005508m.g' => 'esa', 'Thhalv10005643m.g' => 'esa', 'Thhalv10007316m.g' => 'esa', 'Thhalv10009006m.g' => 'esa', 'Thhalv10009309m.g' => 'esa', 'Thhalv10014917m.g' => 'esa', 'Thhalv10014919m.g' => 'esa', 'Thhalv10015393m.g' => 'esa', 'Thhalv10016515m.g' => 'esa', 'Thhalv10029242m.g' => 'esa', 'TPR.G16654' => 'tpr', 'TPR.G20589' => 'tpr', 'TPR.G23029' => 'tpr', 'TPR.G27731' => 'tpr', 'TPR.G28889' => 'tpr', 'TPR.G28899' => 'tpr', 'TPR.G30846' => 'tpr', 'TPR.G5452' => 'tpr', 'TPR.G5713' => 'tpr', 'TPR.G9046' => 'tpr', 'TPR.G9061' => 'tpr', 'TWI09G1075' => 'twi', 'TWI12G0806' => 'twi', 'TWI18G0108' => 'twi', 'TWI53G1361' => 'twi', 'TWI73G0185' => 'twi', 'TWI73G0427' => 'twi', 'unitig_37.g12001' => 'ugi', 'unitig_747.g21660' => 'ugi', 'unitig_748.g7232' => 'ugi', 'unitig_748.g7315' => 'ugi', 'unitig_85.g27262' => 'ugi', 'unitig_92.g28220' => 'ugi', 'vmacro02632' => 'vma', 'vmacro08410' => 'vma', 'vmacro08411' => 'vma', 'vmacro15407' => 'vma', 'VMungo0251G3619' => 'vmu', 'VMungo0720G1204' => 'vmu', 'VMungo0720G1918' => 'vmu', 'VMungo0720G2387' => 'vmu', 'VMungo0720G2961' => 'vmu', 'VMungo1215G2154' => 'vmu', 'VMungo1383G2411' => 'vmu', 'Zm00001eb051130' => 'zma', 'Zm00001eb116830' => 'zma', 'Zm00001eb116850' => 'zma', 'Zm00001eb151740' => 'zma', 'Zm00001eb292360' => 'zma', 'Zm00001eb301640' => 'zma' ), 'gf_id' => 'HOM05D000856', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000856' ), 'data_identifier' => 'HOM05D000856', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000856', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p00010' => 'bna', 'A03p04160' => 'bna', 'A03p17160' => 'bna', 'A04p23370' => 'bna', 'A05p14860' => 'bna', 'A08p37020' => 'bna', 'A09p08050' => 'bna', 'A09p66800' => 'bna', 'A09p67940' => 'bna', 'A10p02680' => 'bna', 'A10p05320' => 'bna', 'Aa31LG1G20560' => 'aar', 'Aa31LG1G20610' => 'aar', 'Aa31LG1G7810' => 'aar', 'Aa31LG5G3590' => 'aar', 'Aa31LG5G6140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3819' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4683' => 'aag', 'Actinidia04480' => 'ach', 'Actinidia05466' => 'ach', 'Actinidia08445' => 'ach', 'Actinidia21170' => 'ach', 'Actinidia24812' => 'ach', 'Actinidia24951' => 'ach', 'Actinidia40088' => 'ach', 'Ah.02g111660' => 'amhyb', 'Ah.11g048900' => 'amhyb', 'Ah.11g049910' => 'amhyb', 'AL1G13870' => 'aly', 'AL1G13880' => 'aly', 'AL1G16760' => 'aly', 'AL390U10020' => 'aly', 'AL4G25520' => 'aly', 'AL6G19890' => 'aly', 'AL6G19900' => 'aly', 'AL6G19910' => 'aly', 'AL8G40100' => 'aly', 'Aqoxy2G03562' => 'aox', 'Aqoxy5G00316' => 'aox', 'Aqoxy5G00926' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1628KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1H403S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2FU6SJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.882I6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8YRY2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YN1SN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AF70II' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZA8L1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F916KL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHRD8H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KTZ8QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S22EMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8M29T' => 'arhy', 'AT1G04270' => 'ath', 'AT1G04280' => 'ath', 'AT1G06750' => 'ath', 'AT1G33850' => 'ath', 'AT2G30630' => 'ath', 'AT5G09490' => 'ath', 'AT5G09500' => 'ath', 'AT5G09510' => 'ath', 'AT5G43640' => 'ath', 'AT5G63070' => 'ath', 'ATR0605G315' => 'atr', 'Atru.chr11.175' => 'acertr', 'Atru.chr11.653' => 'acertr', 'Atru.chr3.1616' => 'acertr', 'Atru.chr4.2230' => 'acertr', 'Atru.chr4.2232' => 'acertr', 'Atru.chr5.1598' => 'acertr', 'Atru.chr5.1600' => 'acertr', 'Atru.chr5.2188' => 'acertr', 'AUR62008326' => 'cqu', 'AUR62011922' => 'cqu', 'AUR62011924' => 'cqu', 'AUR62021771' => 'cqu', 'AUR62032237' => 'cqu', 'AUR62032240' => 'cqu', 'BcaB01g05572' => 'bca', 'BcaB02g10337' => 'bca', 'BcaB04g19944' => 'bca', 'BcaB05g21548' => 'bca', 'BcaB05g21549' => 'bca', 'BcaB05g23227' => 'bca', 'BcaB06g26256' => 'bca', 'BcaB06g26257' => 'bca', 'BcaB06g28379' => 'bca', 'BcaC02g11159' => 'bca', 'BcaC03g13258' => 'bca', 'BcaC03g13259' => 'bca', 'BcaC05g24456' => 'bca', 'BcaC05g24457' => 'bca', 'BcaC07g36922' => 'bca', 'BcaC07g36923' => 'bca', 'BcaC07g42050' => 'bca', 'BcaC07g42176' => 'bca', 'BcaC07g42195' => 'bca', 'BcaC07g42196' => 'bca', 'BcaNung06674' => 'bca', 'BolC2t06351H' => 'bol', 'BolC2t06352H' => 'bol', 'BolC3t12993H' => 'bol', 'BolC4t23525H' => 'bol', 'BolC4t27475H' => 'bol', 'BolC5t29025H' => 'bol', 'BolC5t29026H' => 'bol', 'BolC8t46898H' => 'bol', 'BolC8t46899H' => 'bol', 'BolC8t52630H' => 'bol', 'BolC8t52765H' => 'bol', 'BolC9t53824H' => 'bol', 'BraA03t09760Z' => 'bra', 'BraA03t10990Z' => 'bra', 'BraA05t20413Z' => 'bra', 'BraA08t35602Z' => 'bra', 'BraA09t36458Z' => 'bra', 'BraA09t42018Z' => 'bra', 'BraA09t42129Z' => 'bra', 'BraA10t42536Z' => 'bra', 'BraA10t42537Z' => 'bra', 'C01p10690' => 'bna', 'C02p03890' => 'bna', 'C02p03900' => 'bna', 'C03p04620' => 'bna', 'C04p19870' => 'bna', 'C04p59670' => 'bna', 'C05p02460' => 'bna', 'C05p02470' => 'bna', 'C08p00980' => 'bna', 'C08p00990' => 'bna', 'C08p51030' => 'bna', 'C08p52360' => 'bna', 'C09p09120' => 'bna', 'CAN.G19.15' => 'can', 'CAN.G251.10' => 'can', 'CAN.G251.9' => 'can', 'CAN.G398.24' => 'can', 'CAN.G410.32' => 'can', 'CAN.G881.2' => 'can', 'CANSAT01G3025' => 'cansat', 'CANSAT78G1211' => 'cansat', 'CANSAT78G1218' => 'cansat', 'CANSAT78G1521' => 'cansat', 'CANSAT78G1670' => 'cansat', 'CARHR003600' => 'chi', 'CARHR003610' => 'chi', 'CARHR006290' => 'chi', 'CARHR006430' => 'chi', 'CARHR124110' => 'chi', 'CARHR203870' => 'chi', 'CARHR203880' => 'chi', 'CARHR203890' => 'chi', 'CARHR276880' => 'chi', 'Carub.0001s0346' => 'cru', 'Carub.0001s0347' => 'cru', 'Carub.0001s0607' => 'cru', 'Carub.0003s2768' => 'cru', 'Carub.0003s2769' => 'cru', 'Carub.0004s1178' => 'cru', 'Carub.0006s0806' => 'cru', 'Carub.0006s0807' => 'cru', 'Carub.0006s0808' => 'cru', 'Carub.0008s0501' => 'cru', 'Carub.0008s2379' => 'cru', 'Ca_08655_v3' => 'car', 'Ca_08922_v3' => 'car', 'Ca_08923_v3' => 'car', 'Ca_09119_v3' => 'car', 'Ca_09703_v3' => 'car', 'Ca_09705_v3' => 'car', 'Ca_09835_v3' => 'car', 'Ca_26403_v3' => 'car', 'Ca_30719_v3' => 'car', 'CBR_g17958' => 'cbr', 'CBR_g40516' => 'cbr', 'Cc00_g05350' => 'ccan', 'Cc01_g18690' => 'ccan', 'Cc03_g04830' => 'ccan', 'Cc03_g04850' => 'ccan', 'CDE02G4469' => 'cde', 'CDE06G0883' => 'cde', 'CDE06G1295' => 'cde', 'CDE06G1390' => 'cde', 'CDE07G0584' => 'cde', 'CDE07G1084' => 'cde', 'CDE08G1259' => 'cde', 'Cfa002341' => 'cfa', 'Cfa024337' => 'cfa', 'Ciclev10004749m.g' => 'ccl', 'Ciclev10006127m.g' => 'ccl', 'Ciclev10019720m.g' => 'ccl', 'Ciclev10022652m.g' => 'ccl', 'CiPaw.01G190400' => 'cil', 'CiPaw.01G190500' => 'cil', 'CiPaw.02G116400' => 'cil', 'CiPaw.02G116500' => 'cil', 'CiPaw.04G183000' => 'cil', 'CiPaw.04G183300' => 'cil', 'ClCG05G004610' => 'cla', 'ClCG05G004620' => 'cla', 'ClCG06G006730' => 'cla', 'ClCG06G006740' => 'cla', 'ClCG11G003690' => 'cla', 'COL.COLO4_08276' => 'col', 'COL.COLO4_08277' => 'col', 'COL.COLO4_15787' => 'col', 'COL.COLO4_15789' => 'col', 'Cpa.g.c44815' => 'cpa', 'Cpa.g.sc52.144' => 'cpa', 'Cpa.g.sc58.46' => 'cpa', 'Cpa.g.sc58.47' => 'cpa', 'Cre08.g360900' => 'cre', 'CsaV3_2G013030' => 'csa', 'CsaV3_2G013050' => 'csa', 'CsaV3_2G015620' => 'csa', 'CsaV3_3G012590' => 'csa', 'CsaV3_3G012600' => 'csa', 'CSS0001641' => 'camsi', 'CSS0008310' => 'camsi', 'CSS0013011' => 'camsi', 'CSS0017147' => 'camsi', 'CSS0022970' => 'camsi', 'CSS0025655' => 'camsi', 'CSS0028665' => 'camsi', 'CSS0029117' => 'camsi', 'CSS0032024' => 'camsi', 'CSS0039681' => 'camsi', 'CSS0046516' => 'camsi', 'CSS0050307' => 'camsi', 'DCAR_005871' => 'dca', 'DCAR_007342' => 'dca', 'DCAR_024228' => 'dca', 'DCAR_027277' => 'dca', 'DCAR_030718' => 'dca', 'Dinv20287' => 'din', 'Dinv22461' => 'din', 'Dinv22464' => 'din', 'Dinv29912' => 'din', 'Dinv29913' => 'din', 'Dinv34580' => 'din', 'Dinv34582' => 'din', 'Dinv44632' => 'din', 'Duzib052G0266' => 'dzi', 'Duzib133G0907' => 'dzi', 'Duzib133G1034' => 'dzi', 'Duzib138G0207' => 'dzi', 'Duzib138G0491' => 'dzi', 'Duzib151G0812' => 'dzi', 'Duzib151G1166' => 'dzi', 'Duzib168G0192' => 'dzi', 'Duzib211G0077' => 'dzi', 'Duzib212G0429' => 'dzi', 'Duzib212G0472' => 'dzi', 'ECA233G2617' => 'eca', 'ECA236G4188' => 'eca', 'ECA240G0936' => 'eca', 'ECA240G1129' => 'eca', 'ECA247G0623' => 'eca', 'EL10Ac5g10451' => 'bvu', 'EL10Ac5g10453' => 'bvu', 'EL10Ac5g10894' => 'bvu', 'Eucgr.H00192' => 'egr', 'Eucgr.H00193' => 'egr', 'Eucgr.H00194' => 'egr', 'Eucgr.J01562' => 'egr', 'Eucgr.K03301' => 'egr', 'FAN02G0632' => 'fan', 'FAN05G5378' => 'fan', 'FAN09G3247' => 'fan', 'FAN12G0435' => 'fan', 'FAN12G2426' => 'fan', 'FAN14G1707' => 'fan', 'FAN14G4725' => 'fan', 'FAN15G2071' => 'fan', 'FAN17G3065' => 'fan', 'FAN19G1376' => 'fan', 'FAN20G0354' => 'fan', 'FAN20G2429' => 'fan', 'FAN20G2658' => 'fan', 'FAN24G2343' => 'fan', 'FAN27G2362' => 'fan', 'FAN28G1765' => 'fan', 'FvH4_1g16020' => 'fve', 'FvH4_2g04890' => 'fve', 'FvH4_2g22270' => 'fve', 'FvH4_4g02630' => 'fve', 'FvH4_4g02640' => 'fve', 'FvH4_6g02650' => 'fve', 'Glyma.02G140600' => 'gma', 'Glyma.03G159900' => 'gma', 'Glyma.05G234800' => 'gma', 'Glyma.07G269600' => 'gma', 'Glyma.08G042300' => 'gma', 'Glyma.10G033500' => 'gma', 'Glyma.10G185200' => 'gma', 'Glyma.17G004300' => 'gma', 'Glyma.19G161900' => 'gma', 'Glyma.20G205100' => 'gma', 'Glyma.20G205200' => 'gma', 'Gohir.A01G139101' => 'ghi', 'Gohir.A02G035600' => 'ghi', 'Gohir.A02G117901' => 'ghi', 'Gohir.A07G210100' => 'ghi', 'Gohir.A07G210200' => 'ghi', 'Gohir.A08G061100' => 'ghi', 'Gohir.A09G223000' => 'ghi', 'Gohir.A09G223100' => 'ghi', 'Gohir.A10G113900' => 'ghi', 'Gohir.A10G114000' => 'ghi', 'Gohir.D02G042300' => 'ghi', 'Gohir.D07G216100' => 'ghi', 'Gohir.D07G216200' => 'ghi', 'Gohir.D08G070400' => 'ghi', 'Gohir.D09G225000' => 'ghi', 'Gohir.D09G225100' => 'ghi', 'Gohir.D10G152300' => 'ghi', 'Gohir.D10G153200' => 'ghi', 'Gohir.D11G133701' => 'ghi', 'Gorai.004G074100' => 'gra', 'Gorai.005G046800' => 'gra', 'Gorai.006G246500' => 'gra', 'Gorai.006G246600' => 'gra', 'Gorai.007G142900' => 'gra', 'Gorai.011G171000' => 'gra', 'Gorai.011G171100' => 'gra', 'Gorai.013G104300' => 'gra', 'Gorai.013G104400' => 'gra', 'GSVIVG01000754001' => 'vvi', 'GSVIVG01000756001' => 'vvi', 'GSVIVG01010903001' => 'vvi', 'GSVIVG01017623001' => 'vvi', 'GSVIVG01018113001' => 'vvi', 'GSVIVG01018116001' => 'vvi', 'GSVIVG01018118001' => 'vvi', 'HanXRQChr03g0076211' => 'han', 'HanXRQChr03g0092431' => 'han', 'HanXRQChr03g0092441' => 'han', 'HanXRQChr03g0092591' => 'han', 'HanXRQChr03g0092671' => 'han', 'HanXRQChr03g0092681' => 'han', 'HanXRQChr03g0092691' => 'han', 'HanXRQChr03g0092701' => 'han', 'HanXRQChr03g0092721' => 'han', 'HanXRQChr03g0092731' => 'han', 'HanXRQChr04g0113681' => 'han', 'HanXRQChr10g0281371' => 'han', 'HanXRQChr11g0337141' => 'han', 'HanXRQChr13g0424521' => 'han', 'HanXRQChr13g0424531' => 'han', 'HanXRQChr13g0424541' => 'han', 'HanXRQChr16g0498221' => 'han', 'Haze_04377' => 'cav', 'Haze_11298' => 'cav', 'Haze_24547' => 'cav', 'Haze_24550' => 'cav', 'Haze_26587' => 'cav', 'Hma1.2p1_0650F.1_g195410' => 'hma', 'Hma1.2p1_0893F.1_g233470' => 'hma', 'HPP92_006508' => 'vpl', 'HPP92_024780' => 'vpl', 'Hund02688' => 'sun', 'Hund09380' => 'sun', 'Hund09381' => 'sun', 'Hund09832' => 'sun', 'Hund09833' => 'sun', 'Hund11351' => 'sun', 'Hund11513' => 'sun', 'Lalb_Chr06g0162591' => 'lal', 'Lalb_Chr06g0162601' => 'lal', 'Lalb_Chr06g0169321' => 'lal', 'Lalb_Chr09g0330951' => 'lal', 'Lalb_Chr16g0387631' => 'lal', 'Lalb_Chr21g0306241' => 'lal', 'Lalb_Chr25g0290051' => 'lal', 'Lalb_Chr25g0290061' => 'lal', 'Lalb_Chr25g0290071' => 'lal', 'Lj1g0003876' => 'lja', 'Lj1P1207T36' => 'lonja', 'Lj2C1156G12' => 'lonja', 'Lj3A793G39' => 'lonja', 'Lj3C580G2' => 'lonja', 'Lj3C780G2' => 'lonja', 'Lj3C780T4' => 'lonja', 'Lj3C793G9' => 'lonja', 'Lj4g0012960' => 'lja', 'Lj5g0021252' => 'lja', 'Lj5g0021484' => 'lja', 'Lj5g0024528' => 'lja', 'Lj6A399T12' => 'lonja', 'Lj6A656G65' => 'lonja', 'Lsat_1_v5_gn_3_125500' => 'lsa', 'Lsat_1_v5_gn_3_125540' => 'lsa', 'Lsat_1_v5_gn_5_72701' => 'lsa', 'Lsat_1_v5_gn_8_91560' => 'lsa', 'Lsat_1_v5_gn_9_9640' => 'lsa', 'Manes.01G200600' => 'mes', 'Manes.01G200700' => 'mes', 'Manes.03G168900' => 'mes', 'Manes.03G169000' => 'mes', 'Manes.05G085801' => 'mes', 'Manes.05G086200' => 'mes', 'Manes.15G036700' => 'mes', 'Manes.15G036900' => 'mes', 'Mapoly0004s0172' => 'mpo', 'Mapoly0023s0001' => 'mpo', 'Mapoly0142s0012' => 'mpo', 'MBI01_g32854_MAGBIO' => 'mbi', 'MBI11_g24427_MAGBIO' => 'mbi', 'MBI11_g47319_MAGBIO' => 'mbi', 'MCO01G433' => 'mco', 'MD00G1187800' => 'mdo', 'MD04G1226500' => 'mdo', 'MD05G1203900' => 'mdo', 'MD10G1191100' => 'mdo', 'MD12G1243500' => 'mdo', 'MD13G1207000' => 'mdo', 'MD13G1207100' => 'mdo', 'MD16G1208600' => 'mdo', 'Medtr1g050352' => 'mtr', 'Medtr1g070385' => 'mtr', 'Medtr1g070450' => 'mtr', 'Medtr1g075200' => 'mtr', 'Medtr1g075250' => 'mtr', 'Medtr1g075260' => 'mtr', 'Medtr1g475250' => 'mtr', 'Medtr4g075450' => 'mtr', 'Medtr7g096300' => 'mtr', 'Medtr8g105110' => 'mtr', 'MELO3C006470.2' => 'cme', 'MELO3C006471.2' => 'cme', 'MELO3C020772.2' => 'cme', 'MELO3C026780.2' => 'cme', 'MELO3C026781.2' => 'cme', 'Migut.D00390' => 'egut', 'Migut.G00435' => 'egut', 'Migut.G00436' => 'egut', 'Migut.G00718' => 'egut', 'MSTRG.21891' => 'ama', 'MSTRG.26910' => 'ama', 'MSTRG.4099' => 'ama', 'MSTRG.9925' => 'ama', 'Nitab4.5_0000165g0010' => 'nta', 'Nitab4.5_0000209g0180' => 'nta', 'Nitab4.5_0000244g0440' => 'nta', 'Nitab4.5_0000525g0220' => 'nta', 'Nitab4.5_0001597g0020' => 'nta', 'Nitab4.5_0001878g0040' => 'nta', 'Nitab4.5_0001878g0060' => 'nta', 'Nitab4.5_0002838g0100' => 'nta', 'Nitab4.5_0002838g0120' => 'nta', 'Nitab4.5_0004798g0030' => 'nta', 'Nitab4.5_0005420g0010' => 'nta', 'Nitab4.5_0005507g0010' => 'nta', 'Nitab4.5_0005574g0020' => 'nta', 'Nitab4.5_0005838g0010' => 'nta', 'Nitab4.5_0010580g0020' => 'nta', 'Nn1g02599' => 'nnu', 'Nn1g02608' => 'nnu', 'Nn3g17742' => 'nnu', 'Nn3g19534' => 'nnu', 'Nn3g19535' => 'nnu', 'Oeu008790.1' => 'oeu', 'Oeu008792.1' => 'oeu', 'Oeu032590.1' => 'oeu', 'Oeu035349.1' => 'oeu', 'Oeu049791.1' => 'oeu', 'Os01g0774500' => 'osa', 'Os03g0628800' => 'osa', 'Os03g0798600' => 'osa', 'Os05g0508800' => 'osa', 'Peaxi162Scf00036g02018' => 'pax', 'Peaxi162Scf00578g00032' => 'pax', 'Peaxi162Scf00578g00317' => 'pax', 'Peaxi162Scf00785g00114' => 'pax', 'Peaxi162Scf00813g00119' => 'pax', 'Peaxi162Scf00906g00227' => 'pax', 'PGR004G0875' => 'pgr', 'PGR004G2424' => 'pgr', 'PGR031G1239' => 'pgr', 'PGR031G2474' => 'pgr', 'PGR044G0423' => 'pgr', 'PGSC0003DMG400001128' => 'stu', 'PGSC0003DMG400007336' => 'stu', 'PGSC0003DMG400016318' => 'stu', 'PGSC0003DMG400016319' => 'stu', 'PGSC0003DMG400018074' => 'stu', 'Phvul.001G157700' => 'pvu', 'Phvul.002G148550' => 'pvu', 'Phvul.002G320200' => 'pvu', 'Phvul.003G089200' => 'pvu', 'Phvul.007G126000' => 'pvu', 'Phvul.007G126100' => 'pvu', 'Phvul.007G178000' => 'pvu', 'Phvul.007G178200' => 'pvu', 'Potri.002G043000' => 'ptr', 'Potri.002G043200' => 'ptr', 'Potri.003G123750' => 'ptr', 'Potri.005G055401' => 'ptr', 'Potri.005G219700' => 'ptr', 'Potri.005G220000' => 'ptr', 'Potri.008G161901' => 'ptr', 'Potri.008G162000' => 'ptr', 'Potri.008G162400' => 'ptr', 'Potri.010G076900' => 'ptr', 'Pp3c12_9180' => 'ppa', 'Pp3c13_19770' => 'ppa', 'Pp3c14_22950' => 'ppa', 'Pp3c16_12160' => 'ppa', 'Pp3c27_7820' => 'ppa', 'Pp3c2_3490' => 'ppa', 'Pp3c3_23700' => 'ppa', 'Pp3c3_36520' => 'ppa', 'Pp3c4_15250' => 'ppa', 'PRCOL_00007002' => 'pco', 'Prupe.1G030600' => 'ppe', 'Prupe.1G030700' => 'ppe', 'Prupe.6G345200' => 'ppe', 'Prupe.8G230300' => 'ppe', 'Prupe.8G230500' => 'ppe', 'Psat3g059600' => 'psa', 'Psat5g200920' => 'psa', 'Psat6g056440' => 'psa', 'Psat6g057360' => 'psa', 'Psat6g134120' => 'psa', 'Psat6g134160' => 'psa', 'Psat7g008640' => 'psa', 'Psat7g185240' => 'psa', 'PSO017G1330' => 'pso', 'PSO063G6097' => 'pso', 'PSO170G0835' => 'pso', 'PSO170G2499' => 'pso', 'PSO210G5058' => 'pso', 'PSO210G6154' => 'pso', 'PSO585G0031' => 'pso', 'PSO832G0264' => 'pso', 'PSO832G4288' => 'pso', 'QL03p027355' => 'qlo', 'QL03p027430' => 'qlo', 'QL04p081380' => 'qlo', 'QL06p015642' => 'qlo', 'QL06p015650' => 'qlo', 'QL06p015686' => 'qlo', 'QL12p042927' => 'qlo', 'QL93p1863_0035' => 'qlo', 'RcHm_v2.0_Chr3g0450581' => 'rch', 'RcHm_v2.0_Chr4g0390371' => 'rch', 'RcHm_v2.0_Chr4g0390381' => 'rch', 'RcHm_v2.0_Chr4g0390491' => 'rch', 'RcHm_v2.0_Chr4g0390501' => 'rch', 'RcHm_v2.0_Chr6g0289231' => 'rch', 'Rhsim04G0190400' => 'rsi', 'Rhsim04G0190500' => 'rsi', 'Rhsim04G0190600' => 'rsi', 'Rhsim13G0031400' => 'rsi', 'Rhsim13G0165600' => 'rsi', 'RhsimUnG0114600' => 'rsi', 'RhsimUnG0114700' => 'rsi', 'Sabra02G0034800' => 'sbr', 'Sabra02G0035100' => 'sbr', 'Sabra05G0168600' => 'sbr', 'Sabra05G0168800' => 'sbr', 'Sabra08G0123700' => 'sbr', 'Sabra10G0031900' => 'sbr', 'Sabra13G0039000' => 'sbr', 'SalBow2G0782' => 'sbo', 'SalBow2G1403' => 'sbo', 'SalBow4G0074' => 'sbo', 'SalBow4G2635' => 'sbo', 'SalBow5G3010' => 'sbo', 'Sc05g0000870' => 'sci', 'Sc05g0000890' => 'sci', 'Sc13g0005000' => 'sci', 'Sc13g0005030' => 'sci', 'Sc19g0003790' => 'sci', 'Sc19g0003800' => 'sci', 'Sed0003467' => 'sed', 'Sed0009355' => 'sed', 'Sed0009894' => 'sed', 'Sed0011972' => 'sed', 'Sed0021483' => 'sed', 'Sed0021750' => 'sed', 'Sed0026279' => 'sed', 'SEGI_05312' => 'sgi', 'SEGI_10112' => 'sgi', 'SEGI_15835' => 'sgi', 'SEGI_30386' => 'sgi', 'SEGI_34122' => 'sgi', 'SEGI_35063' => 'sgi', 'SGA_v2.0_scaffold101G29794' => 'sas', 'SGA_v2.0_scaffold1G00573' => 'sas', 'SGA_v2.0_scaffold79G25637' => 'sas', 'SGA_v2.0_scaffold88G27283' => 'sas', 'SGA_v2.0_scaffold88G27285' => 'sas', 'SGA_v2.0_scaffold88G27331' => 'sas', 'SHI09937' => 'shi', 'SMO119G0302' => 'smo', 'SMO137G0231' => 'smo', 'SMO367G1151' => 'smo', 'Solyc02g082000.3' => 'sly', 'Solyc06g031670.3' => 'sly', 'Solyc06g053810.3' => 'sly', 'Solyc07g025457.1' => 'sly', 'Solyc08g059740.1' => 'sly', 'Solyc08g059750.3' => 'sly', 'Solyc09g083370.3' => 'sly', 'Solyc12g038950.3' => 'sly', 'Sopen02g026630' => 'spe', 'Sopen06g018930' => 'spe', 'Sopen06g018940' => 'spe', 'Sopen08g009460' => 'spe', 'Sopen09g032290' => 'spe', 'Sp1g03080' => 'spa', 'Sp1g03090' => 'spa', 'Sp1g05480' => 'spa', 'Sp2g07860' => 'spa', 'Sp2g08430' => 'spa', 'Sp2g08440' => 'spa', 'Sp2g26200' => 'spa', 'Sp4g13170' => 'spa', 'Sp6g33840' => 'spa', 'SpUn1204_0010' => 'spa', 'TAR365G0908' => 'tar', 'TAR381G1270' => 'tar', 'TAR381G1651' => 'tar', 'TAR625G1131' => 'tar', 'TAR633G0962' => 'tar', 'TAR633G1729' => 'tar', 'TAR633G1864' => 'tar', 'TAR636G0221' => 'tar', 'TAR636G0314' => 'tar', 'TAR636G3202' => 'tar', 'THA.LOC104800805' => 'tha', 'THA.LOC104801096' => 'tha', 'THA.LOC104801555' => 'tha', 'THA.LOC104808491' => 'tha', 'THA.LOC104808595' => 'tha', 'THA.LOC104815985' => 'tha', 'THA.LOC104822250' => 'tha', 'THA.LOC104826071' => 'tha', 'Thecc.01G265200' => 'tca', 'Thecc.01G265300' => 'tca', 'Thecc.01G265700' => 'tca', 'Thecc.03G109100' => 'tca', 'Thecc.04G245900' => 'tca', 'Thecc.04G246000' => 'tca', 'Thhalv10003334m.g' => 'esa', 'Thhalv10005508m.g' => 'esa', 'Thhalv10005643m.g' => 'esa', 'Thhalv10007316m.g' => 'esa', 'Thhalv10009006m.g' => 'esa', 'Thhalv10009309m.g' => 'esa', 'Thhalv10014917m.g' => 'esa', 'Thhalv10014919m.g' => 'esa', 'Thhalv10015393m.g' => 'esa', 'Thhalv10016515m.g' => 'esa', 'Thhalv10029242m.g' => 'esa', 'TPR.G16654' => 'tpr', 'TPR.G20589' => 'tpr', 'TPR.G23029' => 'tpr', 'TPR.G27731' => 'tpr', 'TPR.G28889' => 'tpr', 'TPR.G28899' => 'tpr', 'TPR.G30846' => 'tpr', 'TPR.G5452' => 'tpr', 'TPR.G5713' => 'tpr', 'TPR.G9046' => 'tpr', 'TPR.G9061' => 'tpr', 'TWI09G1075' => 'twi', 'TWI12G0806' => 'twi', 'TWI18G0108' => 'twi', 'TWI53G1361' => 'twi', 'TWI73G0185' => 'twi', 'TWI73G0427' => 'twi', 'unitig_37.g12001' => 'ugi', 'unitig_747.g21660' => 'ugi', 'unitig_748.g7232' => 'ugi', 'unitig_748.g7315' => 'ugi', 'unitig_85.g27262' => 'ugi', 'unitig_92.g28220' => 'ugi', 'vmacro02632' => 'vma', 'vmacro08410' => 'vma', 'vmacro08411' => 'vma', 'vmacro15407' => 'vma', 'VMungo0251G3619' => 'vmu', 'VMungo0720G1204' => 'vmu', 'VMungo0720G1918' => 'vmu', 'VMungo0720G2387' => 'vmu', 'VMungo0720G2961' => 'vmu', 'VMungo1215G2154' => 'vmu', 'VMungo1383G2411' => 'vmu', 'Zm00001eb051130' => 'zma', 'Zm00001eb116830' => 'zma', 'Zm00001eb116850' => 'zma', 'Zm00001eb151740' => 'zma', 'Zm00001eb292360' => 'zma', 'Zm00001eb301640' => 'zma' ) $gf_id = 'HOM05D000856' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000856' ) $data_identifier = 'HOM05D000856' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 13, 'ath' => (int) 10, 'atr' => (int) 1, 'acertr' => (int) 8, 'cqu' => (int) 6, 'bca' => (int) 21, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 11, 'car' => (int) 9, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 8, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 5, 'fan' => (int) 16, 'fve' => (int) 6, 'gma' => (int) 11, 'ghi' => (int) 19, 'gra' => (int) 9, 'vvi' => (int) 7, 'han' => (int) 17, 'cav' => (int) 5, 'hma' => (int) 2, 'vpl' => (int) 2, 'sun' => (int) 7, 'lal' => (int) 9, 'lja' => (int) 5, 'lonja' => (int) 9, 'lsa' => (int) 5, 'mes' => (int) 8, 'mpo' => (int) 3, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 10, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 15, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 9, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 9, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 6, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 5, 'spa' => (int) 10, 'tar' => (int) 10, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 11, 'tpr' => (int) 11, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 4, 'vmu' => (int) 7, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb301640' $species_info = array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ) $local_species = 'aly' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000856', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p00010' => 'bna', 'A03p04160' => 'bna', 'A03p17160' => 'bna', 'A04p23370' => 'bna', 'A05p14860' => 'bna', 'A08p37020' => 'bna', 'A09p08050' => 'bna', 'A09p66800' => 'bna', 'A09p67940' => 'bna', 'A10p02680' => 'bna', 'A10p05320' => 'bna', 'Aa31LG1G20560' => 'aar', 'Aa31LG1G20610' => 'aar', 'Aa31LG1G7810' => 'aar', 'Aa31LG5G3590' => 'aar', 'Aa31LG5G6140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3819' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4683' => 'aag', 'Actinidia04480' => 'ach', 'Actinidia05466' => 'ach', 'Actinidia08445' => 'ach', 'Actinidia21170' => 'ach', 'Actinidia24812' => 'ach', 'Actinidia24951' => 'ach', 'Actinidia40088' => 'ach', 'Ah.02g111660' => 'amhyb', 'Ah.11g048900' => 'amhyb', 'Ah.11g049910' => 'amhyb', 'AL1G13870' => 'aly', 'AL1G13880' => 'aly', 'AL1G16760' => 'aly', 'AL390U10020' => 'aly', 'AL4G25520' => 'aly', 'AL6G19890' => 'aly', 'AL6G19900' => 'aly', 'AL6G19910' => 'aly', 'AL8G40100' => 'aly', 'Aqoxy2G03562' => 'aox', 'Aqoxy5G00316' => 'aox', 'Aqoxy5G00926' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1628KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1H403S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2FU6SJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.882I6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8YRY2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YN1SN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AF70II' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZA8L1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F916KL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHRD8H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KTZ8QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S22EMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8M29T' => 'arhy', 'AT1G04270' => 'ath', 'AT1G04280' => 'ath', 'AT1G06750' => 'ath', 'AT1G33850' => 'ath', 'AT2G30630' => 'ath', 'AT5G09490' => 'ath', 'AT5G09500' => 'ath', 'AT5G09510' => 'ath', 'AT5G43640' => 'ath', 'AT5G63070' => 'ath', 'ATR0605G315' => 'atr', 'Atru.chr11.175' => 'acertr', 'Atru.chr11.653' => 'acertr', 'Atru.chr3.1616' => 'acertr', 'Atru.chr4.2230' => 'acertr', 'Atru.chr4.2232' => 'acertr', 'Atru.chr5.1598' => 'acertr', 'Atru.chr5.1600' => 'acertr', 'Atru.chr5.2188' => 'acertr', 'AUR62008326' => 'cqu', 'AUR62011922' => 'cqu', 'AUR62011924' => 'cqu', 'AUR62021771' => 'cqu', 'AUR62032237' => 'cqu', 'AUR62032240' => 'cqu', 'BcaB01g05572' => 'bca', 'BcaB02g10337' => 'bca', 'BcaB04g19944' => 'bca', 'BcaB05g21548' => 'bca', 'BcaB05g21549' => 'bca', 'BcaB05g23227' => 'bca', 'BcaB06g26256' => 'bca', 'BcaB06g26257' => 'bca', 'BcaB06g28379' => 'bca', 'BcaC02g11159' => 'bca', 'BcaC03g13258' => 'bca', 'BcaC03g13259' => 'bca', 'BcaC05g24456' => 'bca', 'BcaC05g24457' => 'bca', 'BcaC07g36922' => 'bca', 'BcaC07g36923' => 'bca', 'BcaC07g42050' => 'bca', 'BcaC07g42176' => 'bca', 'BcaC07g42195' => 'bca', 'BcaC07g42196' => 'bca', 'BcaNung06674' => 'bca', 'BolC2t06351H' => 'bol', 'BolC2t06352H' => 'bol', 'BolC3t12993H' => 'bol', 'BolC4t23525H' => 'bol', 'BolC4t27475H' => 'bol', 'BolC5t29025H' => 'bol', 'BolC5t29026H' => 'bol', 'BolC8t46898H' => 'bol', 'BolC8t46899H' => 'bol', 'BolC8t52630H' => 'bol', 'BolC8t52765H' => 'bol', 'BolC9t53824H' => 'bol', 'BraA03t09760Z' => 'bra', 'BraA03t10990Z' => 'bra', 'BraA05t20413Z' => 'bra', 'BraA08t35602Z' => 'bra', 'BraA09t36458Z' => 'bra', 'BraA09t42018Z' => 'bra', 'BraA09t42129Z' => 'bra', 'BraA10t42536Z' => 'bra', 'BraA10t42537Z' => 'bra', 'C01p10690' => 'bna', 'C02p03890' => 'bna', 'C02p03900' => 'bna', 'C03p04620' => 'bna', 'C04p19870' => 'bna', 'C04p59670' => 'bna', 'C05p02460' => 'bna', 'C05p02470' => 'bna', 'C08p00980' => 'bna', 'C08p00990' => 'bna', 'C08p51030' => 'bna', 'C08p52360' => 'bna', 'C09p09120' => 'bna', 'CAN.G19.15' => 'can', 'CAN.G251.10' => 'can', 'CAN.G251.9' => 'can', 'CAN.G398.24' => 'can', 'CAN.G410.32' => 'can', 'CAN.G881.2' => 'can', 'CANSAT01G3025' => 'cansat', 'CANSAT78G1211' => 'cansat', 'CANSAT78G1218' => 'cansat', 'CANSAT78G1521' => 'cansat', 'CANSAT78G1670' => 'cansat', 'CARHR003600' => 'chi', 'CARHR003610' => 'chi', 'CARHR006290' => 'chi', 'CARHR006430' => 'chi', 'CARHR124110' => 'chi', 'CARHR203870' => 'chi', 'CARHR203880' => 'chi', 'CARHR203890' => 'chi', 'CARHR276880' => 'chi', 'Carub.0001s0346' => 'cru', 'Carub.0001s0347' => 'cru', 'Carub.0001s0607' => 'cru', 'Carub.0003s2768' => 'cru', 'Carub.0003s2769' => 'cru', 'Carub.0004s1178' => 'cru', 'Carub.0006s0806' => 'cru', 'Carub.0006s0807' => 'cru', 'Carub.0006s0808' => 'cru', 'Carub.0008s0501' => 'cru', 'Carub.0008s2379' => 'cru', 'Ca_08655_v3' => 'car', 'Ca_08922_v3' => 'car', 'Ca_08923_v3' => 'car', 'Ca_09119_v3' => 'car', 'Ca_09703_v3' => 'car', 'Ca_09705_v3' => 'car', 'Ca_09835_v3' => 'car', 'Ca_26403_v3' => 'car', 'Ca_30719_v3' => 'car', 'CBR_g17958' => 'cbr', 'CBR_g40516' => 'cbr', 'Cc00_g05350' => 'ccan', 'Cc01_g18690' => 'ccan', 'Cc03_g04830' => 'ccan', 'Cc03_g04850' => 'ccan', 'CDE02G4469' => 'cde', 'CDE06G0883' => 'cde', 'CDE06G1295' => 'cde', 'CDE06G1390' => 'cde', 'CDE07G0584' => 'cde', 'CDE07G1084' => 'cde', 'CDE08G1259' => 'cde', 'Cfa002341' => 'cfa', 'Cfa024337' => 'cfa', 'Ciclev10004749m.g' => 'ccl', 'Ciclev10006127m.g' => 'ccl', 'Ciclev10019720m.g' => 'ccl', 'Ciclev10022652m.g' => 'ccl', 'CiPaw.01G190400' => 'cil', 'CiPaw.01G190500' => 'cil', 'CiPaw.02G116400' => 'cil', 'CiPaw.02G116500' => 'cil', 'CiPaw.04G183000' => 'cil', 'CiPaw.04G183300' => 'cil', 'ClCG05G004610' => 'cla', 'ClCG05G004620' => 'cla', 'ClCG06G006730' => 'cla', 'ClCG06G006740' => 'cla', 'ClCG11G003690' => 'cla', 'COL.COLO4_08276' => 'col', 'COL.COLO4_08277' => 'col', 'COL.COLO4_15787' => 'col', 'COL.COLO4_15789' => 'col', 'Cpa.g.c44815' => 'cpa', 'Cpa.g.sc52.144' => 'cpa', 'Cpa.g.sc58.46' => 'cpa', 'Cpa.g.sc58.47' => 'cpa', 'Cre08.g360900' => 'cre', 'CsaV3_2G013030' => 'csa', 'CsaV3_2G013050' => 'csa', 'CsaV3_2G015620' => 'csa', 'CsaV3_3G012590' => 'csa', 'CsaV3_3G012600' => 'csa', 'CSS0001641' => 'camsi', 'CSS0008310' => 'camsi', 'CSS0013011' => 'camsi', 'CSS0017147' => 'camsi', 'CSS0022970' => 'camsi', 'CSS0025655' => 'camsi', 'CSS0028665' => 'camsi', 'CSS0029117' => 'camsi', 'CSS0032024' => 'camsi', 'CSS0039681' => 'camsi', 'CSS0046516' => 'camsi', 'CSS0050307' => 'camsi', 'DCAR_005871' => 'dca', 'DCAR_007342' => 'dca', 'DCAR_024228' => 'dca', 'DCAR_027277' => 'dca', 'DCAR_030718' => 'dca', 'Dinv20287' => 'din', 'Dinv22461' => 'din', 'Dinv22464' => 'din', 'Dinv29912' => 'din', 'Dinv29913' => 'din', 'Dinv34580' => 'din', 'Dinv34582' => 'din', 'Dinv44632' => 'din', 'Duzib052G0266' => 'dzi', 'Duzib133G0907' => 'dzi', 'Duzib133G1034' => 'dzi', 'Duzib138G0207' => 'dzi', 'Duzib138G0491' => 'dzi', 'Duzib151G0812' => 'dzi', 'Duzib151G1166' => 'dzi', 'Duzib168G0192' => 'dzi', 'Duzib211G0077' => 'dzi', 'Duzib212G0429' => 'dzi', 'Duzib212G0472' => 'dzi', 'ECA233G2617' => 'eca', 'ECA236G4188' => 'eca', 'ECA240G0936' => 'eca', 'ECA240G1129' => 'eca', 'ECA247G0623' => 'eca', 'EL10Ac5g10451' => 'bvu', 'EL10Ac5g10453' => 'bvu', 'EL10Ac5g10894' => 'bvu', 'Eucgr.H00192' => 'egr', 'Eucgr.H00193' => 'egr', 'Eucgr.H00194' => 'egr', 'Eucgr.J01562' => 'egr', 'Eucgr.K03301' => 'egr', 'FAN02G0632' => 'fan', 'FAN05G5378' => 'fan', 'FAN09G3247' => 'fan', 'FAN12G0435' => 'fan', 'FAN12G2426' => 'fan', 'FAN14G1707' => 'fan', 'FAN14G4725' => 'fan', 'FAN15G2071' => 'fan', 'FAN17G3065' => 'fan', 'FAN19G1376' => 'fan', 'FAN20G0354' => 'fan', 'FAN20G2429' => 'fan', 'FAN20G2658' => 'fan', 'FAN24G2343' => 'fan', 'FAN27G2362' => 'fan', 'FAN28G1765' => 'fan', 'FvH4_1g16020' => 'fve', 'FvH4_2g04890' => 'fve', 'FvH4_2g22270' => 'fve', 'FvH4_4g02630' => 'fve', 'FvH4_4g02640' => 'fve', 'FvH4_6g02650' => 'fve', 'Glyma.02G140600' => 'gma', 'Glyma.03G159900' => 'gma', 'Glyma.05G234800' => 'gma', 'Glyma.07G269600' => 'gma', 'Glyma.08G042300' => 'gma', 'Glyma.10G033500' => 'gma', 'Glyma.10G185200' => 'gma', 'Glyma.17G004300' => 'gma', 'Glyma.19G161900' => 'gma', 'Glyma.20G205100' => 'gma', 'Glyma.20G205200' => 'gma', 'Gohir.A01G139101' => 'ghi', 'Gohir.A02G035600' => 'ghi', 'Gohir.A02G117901' => 'ghi', 'Gohir.A07G210100' => 'ghi', 'Gohir.A07G210200' => 'ghi', 'Gohir.A08G061100' => 'ghi', 'Gohir.A09G223000' => 'ghi', 'Gohir.A09G223100' => 'ghi', 'Gohir.A10G113900' => 'ghi', 'Gohir.A10G114000' => 'ghi', 'Gohir.D02G042300' => 'ghi', 'Gohir.D07G216100' => 'ghi', 'Gohir.D07G216200' => 'ghi', 'Gohir.D08G070400' => 'ghi', 'Gohir.D09G225000' => 'ghi', 'Gohir.D09G225100' => 'ghi', 'Gohir.D10G152300' => 'ghi', 'Gohir.D10G153200' => 'ghi', 'Gohir.D11G133701' => 'ghi', 'Gorai.004G074100' => 'gra', 'Gorai.005G046800' => 'gra', 'Gorai.006G246500' => 'gra', 'Gorai.006G246600' => 'gra', 'Gorai.007G142900' => 'gra', 'Gorai.011G171000' => 'gra', 'Gorai.011G171100' => 'gra', 'Gorai.013G104300' => 'gra', 'Gorai.013G104400' => 'gra', 'GSVIVG01000754001' => 'vvi', 'GSVIVG01000756001' => 'vvi', 'GSVIVG01010903001' => 'vvi', 'GSVIVG01017623001' => 'vvi', 'GSVIVG01018113001' => 'vvi', 'GSVIVG01018116001' => 'vvi', 'GSVIVG01018118001' => 'vvi', 'HanXRQChr03g0076211' => 'han', 'HanXRQChr03g0092431' => 'han', 'HanXRQChr03g0092441' => 'han', 'HanXRQChr03g0092591' => 'han', 'HanXRQChr03g0092671' => 'han', 'HanXRQChr03g0092681' => 'han', 'HanXRQChr03g0092691' => 'han', 'HanXRQChr03g0092701' => 'han', 'HanXRQChr03g0092721' => 'han', 'HanXRQChr03g0092731' => 'han', 'HanXRQChr04g0113681' => 'han', 'HanXRQChr10g0281371' => 'han', 'HanXRQChr11g0337141' => 'han', 'HanXRQChr13g0424521' => 'han', 'HanXRQChr13g0424531' => 'han', 'HanXRQChr13g0424541' => 'han', 'HanXRQChr16g0498221' => 'han', 'Haze_04377' => 'cav', 'Haze_11298' => 'cav', 'Haze_24547' => 'cav', 'Haze_24550' => 'cav', 'Haze_26587' => 'cav', 'Hma1.2p1_0650F.1_g195410' => 'hma', 'Hma1.2p1_0893F.1_g233470' => 'hma', 'HPP92_006508' => 'vpl', 'HPP92_024780' => 'vpl', 'Hund02688' => 'sun', 'Hund09380' => 'sun', 'Hund09381' => 'sun', 'Hund09832' => 'sun', 'Hund09833' => 'sun', 'Hund11351' => 'sun', 'Hund11513' => 'sun', 'Lalb_Chr06g0162591' => 'lal', 'Lalb_Chr06g0162601' => 'lal', 'Lalb_Chr06g0169321' => 'lal', 'Lalb_Chr09g0330951' => 'lal', 'Lalb_Chr16g0387631' => 'lal', 'Lalb_Chr21g0306241' => 'lal', 'Lalb_Chr25g0290051' => 'lal', 'Lalb_Chr25g0290061' => 'lal', 'Lalb_Chr25g0290071' => 'lal', 'Lj1g0003876' => 'lja', 'Lj1P1207T36' => 'lonja', 'Lj2C1156G12' => 'lonja', 'Lj3A793G39' => 'lonja', 'Lj3C580G2' => 'lonja', 'Lj3C780G2' => 'lonja', 'Lj3C780T4' => 'lonja', 'Lj3C793G9' => 'lonja', 'Lj4g0012960' => 'lja', 'Lj5g0021252' => 'lja', 'Lj5g0021484' => 'lja', 'Lj5g0024528' => 'lja', 'Lj6A399T12' => 'lonja', 'Lj6A656G65' => 'lonja', 'Lsat_1_v5_gn_3_125500' => 'lsa', 'Lsat_1_v5_gn_3_125540' => 'lsa', 'Lsat_1_v5_gn_5_72701' => 'lsa', 'Lsat_1_v5_gn_8_91560' => 'lsa', 'Lsat_1_v5_gn_9_9640' => 'lsa', 'Manes.01G200600' => 'mes', 'Manes.01G200700' => 'mes', 'Manes.03G168900' => 'mes', 'Manes.03G169000' => 'mes', 'Manes.05G085801' => 'mes', 'Manes.05G086200' => 'mes', 'Manes.15G036700' => 'mes', 'Manes.15G036900' => 'mes', 'Mapoly0004s0172' => 'mpo', 'Mapoly0023s0001' => 'mpo', 'Mapoly0142s0012' => 'mpo', 'MBI01_g32854_MAGBIO' => 'mbi', 'MBI11_g24427_MAGBIO' => 'mbi', 'MBI11_g47319_MAGBIO' => 'mbi', 'MCO01G433' => 'mco', 'MD00G1187800' => 'mdo', 'MD04G1226500' => 'mdo', 'MD05G1203900' => 'mdo', 'MD10G1191100' => 'mdo', 'MD12G1243500' => 'mdo', 'MD13G1207000' => 'mdo', 'MD13G1207100' => 'mdo', 'MD16G1208600' => 'mdo', 'Medtr1g050352' => 'mtr', 'Medtr1g070385' => 'mtr', 'Medtr1g070450' => 'mtr', 'Medtr1g075200' => 'mtr', 'Medtr1g075250' => 'mtr', 'Medtr1g075260' => 'mtr', 'Medtr1g475250' => 'mtr', 'Medtr4g075450' => 'mtr', 'Medtr7g096300' => 'mtr', 'Medtr8g105110' => 'mtr', 'MELO3C006470.2' => 'cme', 'MELO3C006471.2' => 'cme', 'MELO3C020772.2' => 'cme', 'MELO3C026780.2' => 'cme', 'MELO3C026781.2' => 'cme', 'Migut.D00390' => 'egut', 'Migut.G00435' => 'egut', 'Migut.G00436' => 'egut', 'Migut.G00718' => 'egut', 'MSTRG.21891' => 'ama', 'MSTRG.26910' => 'ama', 'MSTRG.4099' => 'ama', 'MSTRG.9925' => 'ama', 'Nitab4.5_0000165g0010' => 'nta', 'Nitab4.5_0000209g0180' => 'nta', 'Nitab4.5_0000244g0440' => 'nta', 'Nitab4.5_0000525g0220' => 'nta', 'Nitab4.5_0001597g0020' => 'nta', 'Nitab4.5_0001878g0040' => 'nta', 'Nitab4.5_0001878g0060' => 'nta', 'Nitab4.5_0002838g0100' => 'nta', 'Nitab4.5_0002838g0120' => 'nta', 'Nitab4.5_0004798g0030' => 'nta', 'Nitab4.5_0005420g0010' => 'nta', 'Nitab4.5_0005507g0010' => 'nta', 'Nitab4.5_0005574g0020' => 'nta', 'Nitab4.5_0005838g0010' => 'nta', 'Nitab4.5_0010580g0020' => 'nta', 'Nn1g02599' => 'nnu', 'Nn1g02608' => 'nnu', 'Nn3g17742' => 'nnu', 'Nn3g19534' => 'nnu', 'Nn3g19535' => 'nnu', 'Oeu008790.1' => 'oeu', 'Oeu008792.1' => 'oeu', 'Oeu032590.1' => 'oeu', 'Oeu035349.1' => 'oeu', 'Oeu049791.1' => 'oeu', 'Os01g0774500' => 'osa', 'Os03g0628800' => 'osa', 'Os03g0798600' => 'osa', 'Os05g0508800' => 'osa', 'Peaxi162Scf00036g02018' => 'pax', 'Peaxi162Scf00578g00032' => 'pax', 'Peaxi162Scf00578g00317' => 'pax', 'Peaxi162Scf00785g00114' => 'pax', 'Peaxi162Scf00813g00119' => 'pax', 'Peaxi162Scf00906g00227' => 'pax', 'PGR004G0875' => 'pgr', 'PGR004G2424' => 'pgr', 'PGR031G1239' => 'pgr', 'PGR031G2474' => 'pgr', 'PGR044G0423' => 'pgr', 'PGSC0003DMG400001128' => 'stu', 'PGSC0003DMG400007336' => 'stu', 'PGSC0003DMG400016318' => 'stu', 'PGSC0003DMG400016319' => 'stu', 'PGSC0003DMG400018074' => 'stu', 'Phvul.001G157700' => 'pvu', 'Phvul.002G148550' => 'pvu', 'Phvul.002G320200' => 'pvu', 'Phvul.003G089200' => 'pvu', 'Phvul.007G126000' => 'pvu', 'Phvul.007G126100' => 'pvu', 'Phvul.007G178000' => 'pvu', 'Phvul.007G178200' => 'pvu', 'Potri.002G043000' => 'ptr', 'Potri.002G043200' => 'ptr', 'Potri.003G123750' => 'ptr', 'Potri.005G055401' => 'ptr', 'Potri.005G219700' => 'ptr', 'Potri.005G220000' => 'ptr', 'Potri.008G161901' => 'ptr', 'Potri.008G162000' => 'ptr', 'Potri.008G162400' => 'ptr', 'Potri.010G076900' => 'ptr', 'Pp3c12_9180' => 'ppa', 'Pp3c13_19770' => 'ppa', 'Pp3c14_22950' => 'ppa', 'Pp3c16_12160' => 'ppa', 'Pp3c27_7820' => 'ppa', 'Pp3c2_3490' => 'ppa', 'Pp3c3_23700' => 'ppa', 'Pp3c3_36520' => 'ppa', 'Pp3c4_15250' => 'ppa', 'PRCOL_00007002' => 'pco', 'Prupe.1G030600' => 'ppe', 'Prupe.1G030700' => 'ppe', 'Prupe.6G345200' => 'ppe', 'Prupe.8G230300' => 'ppe', 'Prupe.8G230500' => 'ppe', 'Psat3g059600' => 'psa', 'Psat5g200920' => 'psa', 'Psat6g056440' => 'psa', 'Psat6g057360' => 'psa', 'Psat6g134120' => 'psa', 'Psat6g134160' => 'psa', 'Psat7g008640' => 'psa', 'Psat7g185240' => 'psa', 'PSO017G1330' => 'pso', 'PSO063G6097' => 'pso', 'PSO170G0835' => 'pso', 'PSO170G2499' => 'pso', 'PSO210G5058' => 'pso', 'PSO210G6154' => 'pso', 'PSO585G0031' => 'pso', 'PSO832G0264' => 'pso', 'PSO832G4288' => 'pso', 'QL03p027355' => 'qlo', 'QL03p027430' => 'qlo', 'QL04p081380' => 'qlo', 'QL06p015642' => 'qlo', 'QL06p015650' => 'qlo', 'QL06p015686' => 'qlo', 'QL12p042927' => 'qlo', 'QL93p1863_0035' => 'qlo', 'RcHm_v2.0_Chr3g0450581' => 'rch', 'RcHm_v2.0_Chr4g0390371' => 'rch', 'RcHm_v2.0_Chr4g0390381' => 'rch', 'RcHm_v2.0_Chr4g0390491' => 'rch', 'RcHm_v2.0_Chr4g0390501' => 'rch', 'RcHm_v2.0_Chr6g0289231' => 'rch', 'Rhsim04G0190400' => 'rsi', 'Rhsim04G0190500' => 'rsi', 'Rhsim04G0190600' => 'rsi', 'Rhsim13G0031400' => 'rsi', 'Rhsim13G0165600' => 'rsi', 'RhsimUnG0114600' => 'rsi', 'RhsimUnG0114700' => 'rsi', 'Sabra02G0034800' => 'sbr', 'Sabra02G0035100' => 'sbr', 'Sabra05G0168600' => 'sbr', 'Sabra05G0168800' => 'sbr', 'Sabra08G0123700' => 'sbr', 'Sabra10G0031900' => 'sbr', 'Sabra13G0039000' => 'sbr', 'SalBow2G0782' => 'sbo', 'SalBow2G1403' => 'sbo', 'SalBow4G0074' => 'sbo', 'SalBow4G2635' => 'sbo', 'SalBow5G3010' => 'sbo', 'Sc05g0000870' => 'sci', 'Sc05g0000890' => 'sci', 'Sc13g0005000' => 'sci', 'Sc13g0005030' => 'sci', 'Sc19g0003790' => 'sci', 'Sc19g0003800' => 'sci', 'Sed0003467' => 'sed', 'Sed0009355' => 'sed', 'Sed0009894' => 'sed', 'Sed0011972' => 'sed', 'Sed0021483' => 'sed', 'Sed0021750' => 'sed', 'Sed0026279' => 'sed', 'SEGI_05312' => 'sgi', 'SEGI_10112' => 'sgi', 'SEGI_15835' => 'sgi', 'SEGI_30386' => 'sgi', 'SEGI_34122' => 'sgi', 'SEGI_35063' => 'sgi', 'SGA_v2.0_scaffold101G29794' => 'sas', 'SGA_v2.0_scaffold1G00573' => 'sas', 'SGA_v2.0_scaffold79G25637' => 'sas', 'SGA_v2.0_scaffold88G27283' => 'sas', 'SGA_v2.0_scaffold88G27285' => 'sas', 'SGA_v2.0_scaffold88G27331' => 'sas', 'SHI09937' => 'shi', 'SMO119G0302' => 'smo', 'SMO137G0231' => 'smo', 'SMO367G1151' => 'smo', 'Solyc02g082000.3' => 'sly', 'Solyc06g031670.3' => 'sly', 'Solyc06g053810.3' => 'sly', 'Solyc07g025457.1' => 'sly', 'Solyc08g059740.1' => 'sly', 'Solyc08g059750.3' => 'sly', 'Solyc09g083370.3' => 'sly', 'Solyc12g038950.3' => 'sly', 'Sopen02g026630' => 'spe', 'Sopen06g018930' => 'spe', 'Sopen06g018940' => 'spe', 'Sopen08g009460' => 'spe', 'Sopen09g032290' => 'spe', 'Sp1g03080' => 'spa', 'Sp1g03090' => 'spa', 'Sp1g05480' => 'spa', 'Sp2g07860' => 'spa', 'Sp2g08430' => 'spa', 'Sp2g08440' => 'spa', 'Sp2g26200' => 'spa', 'Sp4g13170' => 'spa', 'Sp6g33840' => 'spa', 'SpUn1204_0010' => 'spa', 'TAR365G0908' => 'tar', 'TAR381G1270' => 'tar', 'TAR381G1651' => 'tar', 'TAR625G1131' => 'tar', 'TAR633G0962' => 'tar', 'TAR633G1729' => 'tar', 'TAR633G1864' => 'tar', 'TAR636G0221' => 'tar', 'TAR636G0314' => 'tar', 'TAR636G3202' => 'tar', 'THA.LOC104800805' => 'tha', 'THA.LOC104801096' => 'tha', 'THA.LOC104801555' => 'tha', 'THA.LOC104808491' => 'tha', 'THA.LOC104808595' => 'tha', 'THA.LOC104815985' => 'tha', 'THA.LOC104822250' => 'tha', 'THA.LOC104826071' => 'tha', 'Thecc.01G265200' => 'tca', 'Thecc.01G265300' => 'tca', 'Thecc.01G265700' => 'tca', 'Thecc.03G109100' => 'tca', 'Thecc.04G245900' => 'tca', 'Thecc.04G246000' => 'tca', 'Thhalv10003334m.g' => 'esa', 'Thhalv10005508m.g' => 'esa', 'Thhalv10005643m.g' => 'esa', 'Thhalv10007316m.g' => 'esa', 'Thhalv10009006m.g' => 'esa', 'Thhalv10009309m.g' => 'esa', 'Thhalv10014917m.g' => 'esa', 'Thhalv10014919m.g' => 'esa', 'Thhalv10015393m.g' => 'esa', 'Thhalv10016515m.g' => 'esa', 'Thhalv10029242m.g' => 'esa', 'TPR.G16654' => 'tpr', 'TPR.G20589' => 'tpr', 'TPR.G23029' => 'tpr', 'TPR.G27731' => 'tpr', 'TPR.G28889' => 'tpr', 'TPR.G28899' => 'tpr', 'TPR.G30846' => 'tpr', 'TPR.G5452' => 'tpr', 'TPR.G5713' => 'tpr', 'TPR.G9046' => 'tpr', 'TPR.G9061' => 'tpr', 'TWI09G1075' => 'twi', 'TWI12G0806' => 'twi', 'TWI18G0108' => 'twi', 'TWI53G1361' => 'twi', 'TWI73G0185' => 'twi', 'TWI73G0427' => 'twi', 'unitig_37.g12001' => 'ugi', 'unitig_747.g21660' => 'ugi', 'unitig_748.g7232' => 'ugi', 'unitig_748.g7315' => 'ugi', 'unitig_85.g27262' => 'ugi', 'unitig_92.g28220' => 'ugi', 'vmacro02632' => 'vma', 'vmacro08410' => 'vma', 'vmacro08411' => 'vma', 'vmacro15407' => 'vma', 'VMungo0251G3619' => 'vmu', 'VMungo0720G1204' => 'vmu', 'VMungo0720G1918' => 'vmu', 'VMungo0720G2387' => 'vmu', 'VMungo0720G2961' => 'vmu', 'VMungo1215G2154' => 'vmu', 'VMungo1383G2411' => 'vmu', 'Zm00001eb051130' => 'zma', 'Zm00001eb116830' => 'zma', 'Zm00001eb116850' => 'zma', 'Zm00001eb151740' => 'zma', 'Zm00001eb292360' => 'zma', 'Zm00001eb301640' => 'zma' ), 'gf_id' => 'HOM05D000856', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000856' ), 'data_identifier' => 'HOM05D000856', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000856', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p00010' => 'bna', 'A03p04160' => 'bna', 'A03p17160' => 'bna', 'A04p23370' => 'bna', 'A05p14860' => 'bna', 'A08p37020' => 'bna', 'A09p08050' => 'bna', 'A09p66800' => 'bna', 'A09p67940' => 'bna', 'A10p02680' => 'bna', 'A10p05320' => 'bna', 'Aa31LG1G20560' => 'aar', 'Aa31LG1G20610' => 'aar', 'Aa31LG1G7810' => 'aar', 'Aa31LG5G3590' => 'aar', 'Aa31LG5G6140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3819' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4683' => 'aag', 'Actinidia04480' => 'ach', 'Actinidia05466' => 'ach', 'Actinidia08445' => 'ach', 'Actinidia21170' => 'ach', 'Actinidia24812' => 'ach', 'Actinidia24951' => 'ach', 'Actinidia40088' => 'ach', 'Ah.02g111660' => 'amhyb', 'Ah.11g048900' => 'amhyb', 'Ah.11g049910' => 'amhyb', 'AL1G13870' => 'aly', 'AL1G13880' => 'aly', 'AL1G16760' => 'aly', 'AL390U10020' => 'aly', 'AL4G25520' => 'aly', 'AL6G19890' => 'aly', 'AL6G19900' => 'aly', 'AL6G19910' => 'aly', 'AL8G40100' => 'aly', 'Aqoxy2G03562' => 'aox', 'Aqoxy5G00316' => 'aox', 'Aqoxy5G00926' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1628KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1H403S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2FU6SJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.882I6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8YRY2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YN1SN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AF70II' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZA8L1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F916KL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHRD8H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KTZ8QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S22EMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8M29T' => 'arhy', 'AT1G04270' => 'ath', 'AT1G04280' => 'ath', 'AT1G06750' => 'ath', 'AT1G33850' => 'ath', 'AT2G30630' => 'ath', 'AT5G09490' => 'ath', 'AT5G09500' => 'ath', 'AT5G09510' => 'ath', 'AT5G43640' => 'ath', 'AT5G63070' => 'ath', 'ATR0605G315' => 'atr', 'Atru.chr11.175' => 'acertr', 'Atru.chr11.653' => 'acertr', 'Atru.chr3.1616' => 'acertr', 'Atru.chr4.2230' => 'acertr', 'Atru.chr4.2232' => 'acertr', 'Atru.chr5.1598' => 'acertr', 'Atru.chr5.1600' => 'acertr', 'Atru.chr5.2188' => 'acertr', 'AUR62008326' => 'cqu', 'AUR62011922' => 'cqu', 'AUR62011924' => 'cqu', 'AUR62021771' => 'cqu', 'AUR62032237' => 'cqu', 'AUR62032240' => 'cqu', 'BcaB01g05572' => 'bca', 'BcaB02g10337' => 'bca', 'BcaB04g19944' => 'bca', 'BcaB05g21548' => 'bca', 'BcaB05g21549' => 'bca', 'BcaB05g23227' => 'bca', 'BcaB06g26256' => 'bca', 'BcaB06g26257' => 'bca', 'BcaB06g28379' => 'bca', 'BcaC02g11159' => 'bca', 'BcaC03g13258' => 'bca', 'BcaC03g13259' => 'bca', 'BcaC05g24456' => 'bca', 'BcaC05g24457' => 'bca', 'BcaC07g36922' => 'bca', 'BcaC07g36923' => 'bca', 'BcaC07g42050' => 'bca', 'BcaC07g42176' => 'bca', 'BcaC07g42195' => 'bca', 'BcaC07g42196' => 'bca', 'BcaNung06674' => 'bca', 'BolC2t06351H' => 'bol', 'BolC2t06352H' => 'bol', 'BolC3t12993H' => 'bol', 'BolC4t23525H' => 'bol', 'BolC4t27475H' => 'bol', 'BolC5t29025H' => 'bol', 'BolC5t29026H' => 'bol', 'BolC8t46898H' => 'bol', 'BolC8t46899H' => 'bol', 'BolC8t52630H' => 'bol', 'BolC8t52765H' => 'bol', 'BolC9t53824H' => 'bol', 'BraA03t09760Z' => 'bra', 'BraA03t10990Z' => 'bra', 'BraA05t20413Z' => 'bra', 'BraA08t35602Z' => 'bra', 'BraA09t36458Z' => 'bra', 'BraA09t42018Z' => 'bra', 'BraA09t42129Z' => 'bra', 'BraA10t42536Z' => 'bra', 'BraA10t42537Z' => 'bra', 'C01p10690' => 'bna', 'C02p03890' => 'bna', 'C02p03900' => 'bna', 'C03p04620' => 'bna', 'C04p19870' => 'bna', 'C04p59670' => 'bna', 'C05p02460' => 'bna', 'C05p02470' => 'bna', 'C08p00980' => 'bna', 'C08p00990' => 'bna', 'C08p51030' => 'bna', 'C08p52360' => 'bna', 'C09p09120' => 'bna', 'CAN.G19.15' => 'can', 'CAN.G251.10' => 'can', 'CAN.G251.9' => 'can', 'CAN.G398.24' => 'can', 'CAN.G410.32' => 'can', 'CAN.G881.2' => 'can', 'CANSAT01G3025' => 'cansat', 'CANSAT78G1211' => 'cansat', 'CANSAT78G1218' => 'cansat', 'CANSAT78G1521' => 'cansat', 'CANSAT78G1670' => 'cansat', 'CARHR003600' => 'chi', 'CARHR003610' => 'chi', 'CARHR006290' => 'chi', 'CARHR006430' => 'chi', 'CARHR124110' => 'chi', 'CARHR203870' => 'chi', 'CARHR203880' => 'chi', 'CARHR203890' => 'chi', 'CARHR276880' => 'chi', 'Carub.0001s0346' => 'cru', 'Carub.0001s0347' => 'cru', 'Carub.0001s0607' => 'cru', 'Carub.0003s2768' => 'cru', 'Carub.0003s2769' => 'cru', 'Carub.0004s1178' => 'cru', 'Carub.0006s0806' => 'cru', 'Carub.0006s0807' => 'cru', 'Carub.0006s0808' => 'cru', 'Carub.0008s0501' => 'cru', 'Carub.0008s2379' => 'cru', 'Ca_08655_v3' => 'car', 'Ca_08922_v3' => 'car', 'Ca_08923_v3' => 'car', 'Ca_09119_v3' => 'car', 'Ca_09703_v3' => 'car', 'Ca_09705_v3' => 'car', 'Ca_09835_v3' => 'car', 'Ca_26403_v3' => 'car', 'Ca_30719_v3' => 'car', 'CBR_g17958' => 'cbr', 'CBR_g40516' => 'cbr', 'Cc00_g05350' => 'ccan', 'Cc01_g18690' => 'ccan', 'Cc03_g04830' => 'ccan', 'Cc03_g04850' => 'ccan', 'CDE02G4469' => 'cde', 'CDE06G0883' => 'cde', 'CDE06G1295' => 'cde', 'CDE06G1390' => 'cde', 'CDE07G0584' => 'cde', 'CDE07G1084' => 'cde', 'CDE08G1259' => 'cde', 'Cfa002341' => 'cfa', 'Cfa024337' => 'cfa', 'Ciclev10004749m.g' => 'ccl', 'Ciclev10006127m.g' => 'ccl', 'Ciclev10019720m.g' => 'ccl', 'Ciclev10022652m.g' => 'ccl', 'CiPaw.01G190400' => 'cil', 'CiPaw.01G190500' => 'cil', 'CiPaw.02G116400' => 'cil', 'CiPaw.02G116500' => 'cil', 'CiPaw.04G183000' => 'cil', 'CiPaw.04G183300' => 'cil', 'ClCG05G004610' => 'cla', 'ClCG05G004620' => 'cla', 'ClCG06G006730' => 'cla', 'ClCG06G006740' => 'cla', 'ClCG11G003690' => 'cla', 'COL.COLO4_08276' => 'col', 'COL.COLO4_08277' => 'col', 'COL.COLO4_15787' => 'col', 'COL.COLO4_15789' => 'col', 'Cpa.g.c44815' => 'cpa', 'Cpa.g.sc52.144' => 'cpa', 'Cpa.g.sc58.46' => 'cpa', 'Cpa.g.sc58.47' => 'cpa', 'Cre08.g360900' => 'cre', 'CsaV3_2G013030' => 'csa', 'CsaV3_2G013050' => 'csa', 'CsaV3_2G015620' => 'csa', 'CsaV3_3G012590' => 'csa', 'CsaV3_3G012600' => 'csa', 'CSS0001641' => 'camsi', 'CSS0008310' => 'camsi', 'CSS0013011' => 'camsi', 'CSS0017147' => 'camsi', 'CSS0022970' => 'camsi', 'CSS0025655' => 'camsi', 'CSS0028665' => 'camsi', 'CSS0029117' => 'camsi', 'CSS0032024' => 'camsi', 'CSS0039681' => 'camsi', 'CSS0046516' => 'camsi', 'CSS0050307' => 'camsi', 'DCAR_005871' => 'dca', 'DCAR_007342' => 'dca', 'DCAR_024228' => 'dca', 'DCAR_027277' => 'dca', 'DCAR_030718' => 'dca', 'Dinv20287' => 'din', 'Dinv22461' => 'din', 'Dinv22464' => 'din', 'Dinv29912' => 'din', 'Dinv29913' => 'din', 'Dinv34580' => 'din', 'Dinv34582' => 'din', 'Dinv44632' => 'din', 'Duzib052G0266' => 'dzi', 'Duzib133G0907' => 'dzi', 'Duzib133G1034' => 'dzi', 'Duzib138G0207' => 'dzi', 'Duzib138G0491' => 'dzi', 'Duzib151G0812' => 'dzi', 'Duzib151G1166' => 'dzi', 'Duzib168G0192' => 'dzi', 'Duzib211G0077' => 'dzi', 'Duzib212G0429' => 'dzi', 'Duzib212G0472' => 'dzi', 'ECA233G2617' => 'eca', 'ECA236G4188' => 'eca', 'ECA240G0936' => 'eca', 'ECA240G1129' => 'eca', 'ECA247G0623' => 'eca', 'EL10Ac5g10451' => 'bvu', 'EL10Ac5g10453' => 'bvu', 'EL10Ac5g10894' => 'bvu', 'Eucgr.H00192' => 'egr', 'Eucgr.H00193' => 'egr', 'Eucgr.H00194' => 'egr', 'Eucgr.J01562' => 'egr', 'Eucgr.K03301' => 'egr', 'FAN02G0632' => 'fan', 'FAN05G5378' => 'fan', 'FAN09G3247' => 'fan', 'FAN12G0435' => 'fan', 'FAN12G2426' => 'fan', 'FAN14G1707' => 'fan', 'FAN14G4725' => 'fan', 'FAN15G2071' => 'fan', 'FAN17G3065' => 'fan', 'FAN19G1376' => 'fan', 'FAN20G0354' => 'fan', 'FAN20G2429' => 'fan', 'FAN20G2658' => 'fan', 'FAN24G2343' => 'fan', 'FAN27G2362' => 'fan', 'FAN28G1765' => 'fan', 'FvH4_1g16020' => 'fve', 'FvH4_2g04890' => 'fve', 'FvH4_2g22270' => 'fve', 'FvH4_4g02630' => 'fve', 'FvH4_4g02640' => 'fve', 'FvH4_6g02650' => 'fve', 'Glyma.02G140600' => 'gma', 'Glyma.03G159900' => 'gma', 'Glyma.05G234800' => 'gma', 'Glyma.07G269600' => 'gma', 'Glyma.08G042300' => 'gma', 'Glyma.10G033500' => 'gma', 'Glyma.10G185200' => 'gma', 'Glyma.17G004300' => 'gma', 'Glyma.19G161900' => 'gma', 'Glyma.20G205100' => 'gma', 'Glyma.20G205200' => 'gma', 'Gohir.A01G139101' => 'ghi', 'Gohir.A02G035600' => 'ghi', 'Gohir.A02G117901' => 'ghi', 'Gohir.A07G210100' => 'ghi', 'Gohir.A07G210200' => 'ghi', 'Gohir.A08G061100' => 'ghi', 'Gohir.A09G223000' => 'ghi', 'Gohir.A09G223100' => 'ghi', 'Gohir.A10G113900' => 'ghi', 'Gohir.A10G114000' => 'ghi', 'Gohir.D02G042300' => 'ghi', 'Gohir.D07G216100' => 'ghi', 'Gohir.D07G216200' => 'ghi', 'Gohir.D08G070400' => 'ghi', 'Gohir.D09G225000' => 'ghi', 'Gohir.D09G225100' => 'ghi', 'Gohir.D10G152300' => 'ghi', 'Gohir.D10G153200' => 'ghi', 'Gohir.D11G133701' => 'ghi', 'Gorai.004G074100' => 'gra', 'Gorai.005G046800' => 'gra', 'Gorai.006G246500' => 'gra', 'Gorai.006G246600' => 'gra', 'Gorai.007G142900' => 'gra', 'Gorai.011G171000' => 'gra', 'Gorai.011G171100' => 'gra', 'Gorai.013G104300' => 'gra', 'Gorai.013G104400' => 'gra', 'GSVIVG01000754001' => 'vvi', 'GSVIVG01000756001' => 'vvi', 'GSVIVG01010903001' => 'vvi', 'GSVIVG01017623001' => 'vvi', 'GSVIVG01018113001' => 'vvi', 'GSVIVG01018116001' => 'vvi', 'GSVIVG01018118001' => 'vvi', 'HanXRQChr03g0076211' => 'han', 'HanXRQChr03g0092431' => 'han', 'HanXRQChr03g0092441' => 'han', 'HanXRQChr03g0092591' => 'han', 'HanXRQChr03g0092671' => 'han', 'HanXRQChr03g0092681' => 'han', 'HanXRQChr03g0092691' => 'han', 'HanXRQChr03g0092701' => 'han', 'HanXRQChr03g0092721' => 'han', 'HanXRQChr03g0092731' => 'han', 'HanXRQChr04g0113681' => 'han', 'HanXRQChr10g0281371' => 'han', 'HanXRQChr11g0337141' => 'han', 'HanXRQChr13g0424521' => 'han', 'HanXRQChr13g0424531' => 'han', 'HanXRQChr13g0424541' => 'han', 'HanXRQChr16g0498221' => 'han', 'Haze_04377' => 'cav', 'Haze_11298' => 'cav', 'Haze_24547' => 'cav', 'Haze_24550' => 'cav', 'Haze_26587' => 'cav', 'Hma1.2p1_0650F.1_g195410' => 'hma', 'Hma1.2p1_0893F.1_g233470' => 'hma', 'HPP92_006508' => 'vpl', 'HPP92_024780' => 'vpl', 'Hund02688' => 'sun', 'Hund09380' => 'sun', 'Hund09381' => 'sun', 'Hund09832' => 'sun', 'Hund09833' => 'sun', 'Hund11351' => 'sun', 'Hund11513' => 'sun', 'Lalb_Chr06g0162591' => 'lal', 'Lalb_Chr06g0162601' => 'lal', 'Lalb_Chr06g0169321' => 'lal', 'Lalb_Chr09g0330951' => 'lal', 'Lalb_Chr16g0387631' => 'lal', 'Lalb_Chr21g0306241' => 'lal', 'Lalb_Chr25g0290051' => 'lal', 'Lalb_Chr25g0290061' => 'lal', 'Lalb_Chr25g0290071' => 'lal', 'Lj1g0003876' => 'lja', 'Lj1P1207T36' => 'lonja', 'Lj2C1156G12' => 'lonja', 'Lj3A793G39' => 'lonja', 'Lj3C580G2' => 'lonja', 'Lj3C780G2' => 'lonja', 'Lj3C780T4' => 'lonja', 'Lj3C793G9' => 'lonja', 'Lj4g0012960' => 'lja', 'Lj5g0021252' => 'lja', 'Lj5g0021484' => 'lja', 'Lj5g0024528' => 'lja', 'Lj6A399T12' => 'lonja', 'Lj6A656G65' => 'lonja', 'Lsat_1_v5_gn_3_125500' => 'lsa', 'Lsat_1_v5_gn_3_125540' => 'lsa', 'Lsat_1_v5_gn_5_72701' => 'lsa', 'Lsat_1_v5_gn_8_91560' => 'lsa', 'Lsat_1_v5_gn_9_9640' => 'lsa', 'Manes.01G200600' => 'mes', 'Manes.01G200700' => 'mes', 'Manes.03G168900' => 'mes', 'Manes.03G169000' => 'mes', 'Manes.05G085801' => 'mes', 'Manes.05G086200' => 'mes', 'Manes.15G036700' => 'mes', 'Manes.15G036900' => 'mes', 'Mapoly0004s0172' => 'mpo', 'Mapoly0023s0001' => 'mpo', 'Mapoly0142s0012' => 'mpo', 'MBI01_g32854_MAGBIO' => 'mbi', 'MBI11_g24427_MAGBIO' => 'mbi', 'MBI11_g47319_MAGBIO' => 'mbi', 'MCO01G433' => 'mco', 'MD00G1187800' => 'mdo', 'MD04G1226500' => 'mdo', 'MD05G1203900' => 'mdo', 'MD10G1191100' => 'mdo', 'MD12G1243500' => 'mdo', 'MD13G1207000' => 'mdo', 'MD13G1207100' => 'mdo', 'MD16G1208600' => 'mdo', 'Medtr1g050352' => 'mtr', 'Medtr1g070385' => 'mtr', 'Medtr1g070450' => 'mtr', 'Medtr1g075200' => 'mtr', 'Medtr1g075250' => 'mtr', 'Medtr1g075260' => 'mtr', 'Medtr1g475250' => 'mtr', 'Medtr4g075450' => 'mtr', 'Medtr7g096300' => 'mtr', 'Medtr8g105110' => 'mtr', 'MELO3C006470.2' => 'cme', 'MELO3C006471.2' => 'cme', 'MELO3C020772.2' => 'cme', 'MELO3C026780.2' => 'cme', 'MELO3C026781.2' => 'cme', 'Migut.D00390' => 'egut', 'Migut.G00435' => 'egut', 'Migut.G00436' => 'egut', 'Migut.G00718' => 'egut', 'MSTRG.21891' => 'ama', 'MSTRG.26910' => 'ama', 'MSTRG.4099' => 'ama', 'MSTRG.9925' => 'ama', 'Nitab4.5_0000165g0010' => 'nta', 'Nitab4.5_0000209g0180' => 'nta', 'Nitab4.5_0000244g0440' => 'nta', 'Nitab4.5_0000525g0220' => 'nta', 'Nitab4.5_0001597g0020' => 'nta', 'Nitab4.5_0001878g0040' => 'nta', 'Nitab4.5_0001878g0060' => 'nta', 'Nitab4.5_0002838g0100' => 'nta', 'Nitab4.5_0002838g0120' => 'nta', 'Nitab4.5_0004798g0030' => 'nta', 'Nitab4.5_0005420g0010' => 'nta', 'Nitab4.5_0005507g0010' => 'nta', 'Nitab4.5_0005574g0020' => 'nta', 'Nitab4.5_0005838g0010' => 'nta', 'Nitab4.5_0010580g0020' => 'nta', 'Nn1g02599' => 'nnu', 'Nn1g02608' => 'nnu', 'Nn3g17742' => 'nnu', 'Nn3g19534' => 'nnu', 'Nn3g19535' => 'nnu', 'Oeu008790.1' => 'oeu', 'Oeu008792.1' => 'oeu', 'Oeu032590.1' => 'oeu', 'Oeu035349.1' => 'oeu', 'Oeu049791.1' => 'oeu', 'Os01g0774500' => 'osa', 'Os03g0628800' => 'osa', 'Os03g0798600' => 'osa', 'Os05g0508800' => 'osa', 'Peaxi162Scf00036g02018' => 'pax', 'Peaxi162Scf00578g00032' => 'pax', 'Peaxi162Scf00578g00317' => 'pax', 'Peaxi162Scf00785g00114' => 'pax', 'Peaxi162Scf00813g00119' => 'pax', 'Peaxi162Scf00906g00227' => 'pax', 'PGR004G0875' => 'pgr', 'PGR004G2424' => 'pgr', 'PGR031G1239' => 'pgr', 'PGR031G2474' => 'pgr', 'PGR044G0423' => 'pgr', 'PGSC0003DMG400001128' => 'stu', 'PGSC0003DMG400007336' => 'stu', 'PGSC0003DMG400016318' => 'stu', 'PGSC0003DMG400016319' => 'stu', 'PGSC0003DMG400018074' => 'stu', 'Phvul.001G157700' => 'pvu', 'Phvul.002G148550' => 'pvu', 'Phvul.002G320200' => 'pvu', 'Phvul.003G089200' => 'pvu', 'Phvul.007G126000' => 'pvu', 'Phvul.007G126100' => 'pvu', 'Phvul.007G178000' => 'pvu', 'Phvul.007G178200' => 'pvu', 'Potri.002G043000' => 'ptr', 'Potri.002G043200' => 'ptr', 'Potri.003G123750' => 'ptr', 'Potri.005G055401' => 'ptr', 'Potri.005G219700' => 'ptr', 'Potri.005G220000' => 'ptr', 'Potri.008G161901' => 'ptr', 'Potri.008G162000' => 'ptr', 'Potri.008G162400' => 'ptr', 'Potri.010G076900' => 'ptr', 'Pp3c12_9180' => 'ppa', 'Pp3c13_19770' => 'ppa', 'Pp3c14_22950' => 'ppa', 'Pp3c16_12160' => 'ppa', 'Pp3c27_7820' => 'ppa', 'Pp3c2_3490' => 'ppa', 'Pp3c3_23700' => 'ppa', 'Pp3c3_36520' => 'ppa', 'Pp3c4_15250' => 'ppa', 'PRCOL_00007002' => 'pco', 'Prupe.1G030600' => 'ppe', 'Prupe.1G030700' => 'ppe', 'Prupe.6G345200' => 'ppe', 'Prupe.8G230300' => 'ppe', 'Prupe.8G230500' => 'ppe', 'Psat3g059600' => 'psa', 'Psat5g200920' => 'psa', 'Psat6g056440' => 'psa', 'Psat6g057360' => 'psa', 'Psat6g134120' => 'psa', 'Psat6g134160' => 'psa', 'Psat7g008640' => 'psa', 'Psat7g185240' => 'psa', 'PSO017G1330' => 'pso', 'PSO063G6097' => 'pso', 'PSO170G0835' => 'pso', 'PSO170G2499' => 'pso', 'PSO210G5058' => 'pso', 'PSO210G6154' => 'pso', 'PSO585G0031' => 'pso', 'PSO832G0264' => 'pso', 'PSO832G4288' => 'pso', 'QL03p027355' => 'qlo', 'QL03p027430' => 'qlo', 'QL04p081380' => 'qlo', 'QL06p015642' => 'qlo', 'QL06p015650' => 'qlo', 'QL06p015686' => 'qlo', 'QL12p042927' => 'qlo', 'QL93p1863_0035' => 'qlo', 'RcHm_v2.0_Chr3g0450581' => 'rch', 'RcHm_v2.0_Chr4g0390371' => 'rch', 'RcHm_v2.0_Chr4g0390381' => 'rch', 'RcHm_v2.0_Chr4g0390491' => 'rch', 'RcHm_v2.0_Chr4g0390501' => 'rch', 'RcHm_v2.0_Chr6g0289231' => 'rch', 'Rhsim04G0190400' => 'rsi', 'Rhsim04G0190500' => 'rsi', 'Rhsim04G0190600' => 'rsi', 'Rhsim13G0031400' => 'rsi', 'Rhsim13G0165600' => 'rsi', 'RhsimUnG0114600' => 'rsi', 'RhsimUnG0114700' => 'rsi', 'Sabra02G0034800' => 'sbr', 'Sabra02G0035100' => 'sbr', 'Sabra05G0168600' => 'sbr', 'Sabra05G0168800' => 'sbr', 'Sabra08G0123700' => 'sbr', 'Sabra10G0031900' => 'sbr', 'Sabra13G0039000' => 'sbr', 'SalBow2G0782' => 'sbo', 'SalBow2G1403' => 'sbo', 'SalBow4G0074' => 'sbo', 'SalBow4G2635' => 'sbo', 'SalBow5G3010' => 'sbo', 'Sc05g0000870' => 'sci', 'Sc05g0000890' => 'sci', 'Sc13g0005000' => 'sci', 'Sc13g0005030' => 'sci', 'Sc19g0003790' => 'sci', 'Sc19g0003800' => 'sci', 'Sed0003467' => 'sed', 'Sed0009355' => 'sed', 'Sed0009894' => 'sed', 'Sed0011972' => 'sed', 'Sed0021483' => 'sed', 'Sed0021750' => 'sed', 'Sed0026279' => 'sed', 'SEGI_05312' => 'sgi', 'SEGI_10112' => 'sgi', 'SEGI_15835' => 'sgi', 'SEGI_30386' => 'sgi', 'SEGI_34122' => 'sgi', 'SEGI_35063' => 'sgi', 'SGA_v2.0_scaffold101G29794' => 'sas', 'SGA_v2.0_scaffold1G00573' => 'sas', 'SGA_v2.0_scaffold79G25637' => 'sas', 'SGA_v2.0_scaffold88G27283' => 'sas', 'SGA_v2.0_scaffold88G27285' => 'sas', 'SGA_v2.0_scaffold88G27331' => 'sas', 'SHI09937' => 'shi', 'SMO119G0302' => 'smo', 'SMO137G0231' => 'smo', 'SMO367G1151' => 'smo', 'Solyc02g082000.3' => 'sly', 'Solyc06g031670.3' => 'sly', 'Solyc06g053810.3' => 'sly', 'Solyc07g025457.1' => 'sly', 'Solyc08g059740.1' => 'sly', 'Solyc08g059750.3' => 'sly', 'Solyc09g083370.3' => 'sly', 'Solyc12g038950.3' => 'sly', 'Sopen02g026630' => 'spe', 'Sopen06g018930' => 'spe', 'Sopen06g018940' => 'spe', 'Sopen08g009460' => 'spe', 'Sopen09g032290' => 'spe', 'Sp1g03080' => 'spa', 'Sp1g03090' => 'spa', 'Sp1g05480' => 'spa', 'Sp2g07860' => 'spa', 'Sp2g08430' => 'spa', 'Sp2g08440' => 'spa', 'Sp2g26200' => 'spa', 'Sp4g13170' => 'spa', 'Sp6g33840' => 'spa', 'SpUn1204_0010' => 'spa', 'TAR365G0908' => 'tar', 'TAR381G1270' => 'tar', 'TAR381G1651' => 'tar', 'TAR625G1131' => 'tar', 'TAR633G0962' => 'tar', 'TAR633G1729' => 'tar', 'TAR633G1864' => 'tar', 'TAR636G0221' => 'tar', 'TAR636G0314' => 'tar', 'TAR636G3202' => 'tar', 'THA.LOC104800805' => 'tha', 'THA.LOC104801096' => 'tha', 'THA.LOC104801555' => 'tha', 'THA.LOC104808491' => 'tha', 'THA.LOC104808595' => 'tha', 'THA.LOC104815985' => 'tha', 'THA.LOC104822250' => 'tha', 'THA.LOC104826071' => 'tha', 'Thecc.01G265200' => 'tca', 'Thecc.01G265300' => 'tca', 'Thecc.01G265700' => 'tca', 'Thecc.03G109100' => 'tca', 'Thecc.04G245900' => 'tca', 'Thecc.04G246000' => 'tca', 'Thhalv10003334m.g' => 'esa', 'Thhalv10005508m.g' => 'esa', 'Thhalv10005643m.g' => 'esa', 'Thhalv10007316m.g' => 'esa', 'Thhalv10009006m.g' => 'esa', 'Thhalv10009309m.g' => 'esa', 'Thhalv10014917m.g' => 'esa', 'Thhalv10014919m.g' => 'esa', 'Thhalv10015393m.g' => 'esa', 'Thhalv10016515m.g' => 'esa', 'Thhalv10029242m.g' => 'esa', 'TPR.G16654' => 'tpr', 'TPR.G20589' => 'tpr', 'TPR.G23029' => 'tpr', 'TPR.G27731' => 'tpr', 'TPR.G28889' => 'tpr', 'TPR.G28899' => 'tpr', 'TPR.G30846' => 'tpr', 'TPR.G5452' => 'tpr', 'TPR.G5713' => 'tpr', 'TPR.G9046' => 'tpr', 'TPR.G9061' => 'tpr', 'TWI09G1075' => 'twi', 'TWI12G0806' => 'twi', 'TWI18G0108' => 'twi', 'TWI53G1361' => 'twi', 'TWI73G0185' => 'twi', 'TWI73G0427' => 'twi', 'unitig_37.g12001' => 'ugi', 'unitig_747.g21660' => 'ugi', 'unitig_748.g7232' => 'ugi', 'unitig_748.g7315' => 'ugi', 'unitig_85.g27262' => 'ugi', 'unitig_92.g28220' => 'ugi', 'vmacro02632' => 'vma', 'vmacro08410' => 'vma', 'vmacro08411' => 'vma', 'vmacro15407' => 'vma', 'VMungo0251G3619' => 'vmu', 'VMungo0720G1204' => 'vmu', 'VMungo0720G1918' => 'vmu', 'VMungo0720G2387' => 'vmu', 'VMungo0720G2961' => 'vmu', 'VMungo1215G2154' => 'vmu', 'VMungo1383G2411' => 'vmu', 'Zm00001eb051130' => 'zma', 'Zm00001eb116830' => 'zma', 'Zm00001eb116850' => 'zma', 'Zm00001eb151740' => 'zma', 'Zm00001eb292360' => 'zma', 'Zm00001eb301640' => 'zma' ) $gf_id = 'HOM05D000856' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000856' ) $data_identifier = 'HOM05D000856' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 13, 'ath' => (int) 10, 'atr' => (int) 1, 'acertr' => (int) 8, 'cqu' => (int) 6, 'bca' => (int) 21, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 11, 'car' => (int) 9, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 8, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 5, 'fan' => (int) 16, 'fve' => (int) 6, 'gma' => (int) 11, 'ghi' => (int) 19, 'gra' => (int) 9, 'vvi' => (int) 7, 'han' => (int) 17, 'cav' => (int) 5, 'hma' => (int) 2, 'vpl' => (int) 2, 'sun' => (int) 7, 'lal' => (int) 9, 'lja' => (int) 5, 'lonja' => (int) 9, 'lsa' => (int) 5, 'mes' => (int) 8, 'mpo' => (int) 3, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 10, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 15, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 9, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 9, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 6, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 5, 'spa' => (int) 10, 'tar' => (int) 10, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 11, 'tpr' => (int) 11, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 4, 'vmu' => (int) 7, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb301640' $species_info = array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ) $local_species = 'aly' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000856', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p00010' => 'bna', 'A03p04160' => 'bna', 'A03p17160' => 'bna', 'A04p23370' => 'bna', 'A05p14860' => 'bna', 'A08p37020' => 'bna', 'A09p08050' => 'bna', 'A09p66800' => 'bna', 'A09p67940' => 'bna', 'A10p02680' => 'bna', 'A10p05320' => 'bna', 'Aa31LG1G20560' => 'aar', 'Aa31LG1G20610' => 'aar', 'Aa31LG1G7810' => 'aar', 'Aa31LG5G3590' => 'aar', 'Aa31LG5G6140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3819' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4683' => 'aag', 'Actinidia04480' => 'ach', 'Actinidia05466' => 'ach', 'Actinidia08445' => 'ach', 'Actinidia21170' => 'ach', 'Actinidia24812' => 'ach', 'Actinidia24951' => 'ach', 'Actinidia40088' => 'ach', 'Ah.02g111660' => 'amhyb', 'Ah.11g048900' => 'amhyb', 'Ah.11g049910' => 'amhyb', 'AL1G13870' => 'aly', 'AL1G13880' => 'aly', 'AL1G16760' => 'aly', 'AL390U10020' => 'aly', 'AL4G25520' => 'aly', 'AL6G19890' => 'aly', 'AL6G19900' => 'aly', 'AL6G19910' => 'aly', 'AL8G40100' => 'aly', 'Aqoxy2G03562' => 'aox', 'Aqoxy5G00316' => 'aox', 'Aqoxy5G00926' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1628KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1H403S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2FU6SJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.882I6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8YRY2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YN1SN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AF70II' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZA8L1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F916KL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHRD8H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KTZ8QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S22EMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8M29T' => 'arhy', 'AT1G04270' => 'ath', 'AT1G04280' => 'ath', 'AT1G06750' => 'ath', 'AT1G33850' => 'ath', 'AT2G30630' => 'ath', 'AT5G09490' => 'ath', 'AT5G09500' => 'ath', 'AT5G09510' => 'ath', 'AT5G43640' => 'ath', 'AT5G63070' => 'ath', 'ATR0605G315' => 'atr', 'Atru.chr11.175' => 'acertr', 'Atru.chr11.653' => 'acertr', 'Atru.chr3.1616' => 'acertr', 'Atru.chr4.2230' => 'acertr', 'Atru.chr4.2232' => 'acertr', 'Atru.chr5.1598' => 'acertr', 'Atru.chr5.1600' => 'acertr', 'Atru.chr5.2188' => 'acertr', 'AUR62008326' => 'cqu', 'AUR62011922' => 'cqu', 'AUR62011924' => 'cqu', 'AUR62021771' => 'cqu', 'AUR62032237' => 'cqu', 'AUR62032240' => 'cqu', 'BcaB01g05572' => 'bca', 'BcaB02g10337' => 'bca', 'BcaB04g19944' => 'bca', 'BcaB05g21548' => 'bca', 'BcaB05g21549' => 'bca', 'BcaB05g23227' => 'bca', 'BcaB06g26256' => 'bca', 'BcaB06g26257' => 'bca', 'BcaB06g28379' => 'bca', 'BcaC02g11159' => 'bca', 'BcaC03g13258' => 'bca', 'BcaC03g13259' => 'bca', 'BcaC05g24456' => 'bca', 'BcaC05g24457' => 'bca', 'BcaC07g36922' => 'bca', 'BcaC07g36923' => 'bca', 'BcaC07g42050' => 'bca', 'BcaC07g42176' => 'bca', 'BcaC07g42195' => 'bca', 'BcaC07g42196' => 'bca', 'BcaNung06674' => 'bca', 'BolC2t06351H' => 'bol', 'BolC2t06352H' => 'bol', 'BolC3t12993H' => 'bol', 'BolC4t23525H' => 'bol', 'BolC4t27475H' => 'bol', 'BolC5t29025H' => 'bol', 'BolC5t29026H' => 'bol', 'BolC8t46898H' => 'bol', 'BolC8t46899H' => 'bol', 'BolC8t52630H' => 'bol', 'BolC8t52765H' => 'bol', 'BolC9t53824H' => 'bol', 'BraA03t09760Z' => 'bra', 'BraA03t10990Z' => 'bra', 'BraA05t20413Z' => 'bra', 'BraA08t35602Z' => 'bra', 'BraA09t36458Z' => 'bra', 'BraA09t42018Z' => 'bra', 'BraA09t42129Z' => 'bra', 'BraA10t42536Z' => 'bra', 'BraA10t42537Z' => 'bra', 'C01p10690' => 'bna', 'C02p03890' => 'bna', 'C02p03900' => 'bna', 'C03p04620' => 'bna', 'C04p19870' => 'bna', 'C04p59670' => 'bna', 'C05p02460' => 'bna', 'C05p02470' => 'bna', 'C08p00980' => 'bna', 'C08p00990' => 'bna', 'C08p51030' => 'bna', 'C08p52360' => 'bna', 'C09p09120' => 'bna', 'CAN.G19.15' => 'can', 'CAN.G251.10' => 'can', 'CAN.G251.9' => 'can', 'CAN.G398.24' => 'can', 'CAN.G410.32' => 'can', 'CAN.G881.2' => 'can', 'CANSAT01G3025' => 'cansat', 'CANSAT78G1211' => 'cansat', 'CANSAT78G1218' => 'cansat', 'CANSAT78G1521' => 'cansat', 'CANSAT78G1670' => 'cansat', 'CARHR003600' => 'chi', 'CARHR003610' => 'chi', 'CARHR006290' => 'chi', 'CARHR006430' => 'chi', 'CARHR124110' => 'chi', 'CARHR203870' => 'chi', 'CARHR203880' => 'chi', 'CARHR203890' => 'chi', 'CARHR276880' => 'chi', 'Carub.0001s0346' => 'cru', 'Carub.0001s0347' => 'cru', 'Carub.0001s0607' => 'cru', 'Carub.0003s2768' => 'cru', 'Carub.0003s2769' => 'cru', 'Carub.0004s1178' => 'cru', 'Carub.0006s0806' => 'cru', 'Carub.0006s0807' => 'cru', 'Carub.0006s0808' => 'cru', 'Carub.0008s0501' => 'cru', 'Carub.0008s2379' => 'cru', 'Ca_08655_v3' => 'car', 'Ca_08922_v3' => 'car', 'Ca_08923_v3' => 'car', 'Ca_09119_v3' => 'car', 'Ca_09703_v3' => 'car', 'Ca_09705_v3' => 'car', 'Ca_09835_v3' => 'car', 'Ca_26403_v3' => 'car', 'Ca_30719_v3' => 'car', 'CBR_g17958' => 'cbr', 'CBR_g40516' => 'cbr', 'Cc00_g05350' => 'ccan', 'Cc01_g18690' => 'ccan', 'Cc03_g04830' => 'ccan', 'Cc03_g04850' => 'ccan', 'CDE02G4469' => 'cde', 'CDE06G0883' => 'cde', 'CDE06G1295' => 'cde', 'CDE06G1390' => 'cde', 'CDE07G0584' => 'cde', 'CDE07G1084' => 'cde', 'CDE08G1259' => 'cde', 'Cfa002341' => 'cfa', 'Cfa024337' => 'cfa', 'Ciclev10004749m.g' => 'ccl', 'Ciclev10006127m.g' => 'ccl', 'Ciclev10019720m.g' => 'ccl', 'Ciclev10022652m.g' => 'ccl', 'CiPaw.01G190400' => 'cil', 'CiPaw.01G190500' => 'cil', 'CiPaw.02G116400' => 'cil', 'CiPaw.02G116500' => 'cil', 'CiPaw.04G183000' => 'cil', 'CiPaw.04G183300' => 'cil', 'ClCG05G004610' => 'cla', 'ClCG05G004620' => 'cla', 'ClCG06G006730' => 'cla', 'ClCG06G006740' => 'cla', 'ClCG11G003690' => 'cla', 'COL.COLO4_08276' => 'col', 'COL.COLO4_08277' => 'col', 'COL.COLO4_15787' => 'col', 'COL.COLO4_15789' => 'col', 'Cpa.g.c44815' => 'cpa', 'Cpa.g.sc52.144' => 'cpa', 'Cpa.g.sc58.46' => 'cpa', 'Cpa.g.sc58.47' => 'cpa', 'Cre08.g360900' => 'cre', 'CsaV3_2G013030' => 'csa', 'CsaV3_2G013050' => 'csa', 'CsaV3_2G015620' => 'csa', 'CsaV3_3G012590' => 'csa', 'CsaV3_3G012600' => 'csa', 'CSS0001641' => 'camsi', 'CSS0008310' => 'camsi', 'CSS0013011' => 'camsi', 'CSS0017147' => 'camsi', 'CSS0022970' => 'camsi', 'CSS0025655' => 'camsi', 'CSS0028665' => 'camsi', 'CSS0029117' => 'camsi', 'CSS0032024' => 'camsi', 'CSS0039681' => 'camsi', 'CSS0046516' => 'camsi', 'CSS0050307' => 'camsi', 'DCAR_005871' => 'dca', 'DCAR_007342' => 'dca', 'DCAR_024228' => 'dca', 'DCAR_027277' => 'dca', 'DCAR_030718' => 'dca', 'Dinv20287' => 'din', 'Dinv22461' => 'din', 'Dinv22464' => 'din', 'Dinv29912' => 'din', 'Dinv29913' => 'din', 'Dinv34580' => 'din', 'Dinv34582' => 'din', 'Dinv44632' => 'din', 'Duzib052G0266' => 'dzi', 'Duzib133G0907' => 'dzi', 'Duzib133G1034' => 'dzi', 'Duzib138G0207' => 'dzi', 'Duzib138G0491' => 'dzi', 'Duzib151G0812' => 'dzi', 'Duzib151G1166' => 'dzi', 'Duzib168G0192' => 'dzi', 'Duzib211G0077' => 'dzi', 'Duzib212G0429' => 'dzi', 'Duzib212G0472' => 'dzi', 'ECA233G2617' => 'eca', 'ECA236G4188' => 'eca', 'ECA240G0936' => 'eca', 'ECA240G1129' => 'eca', 'ECA247G0623' => 'eca', 'EL10Ac5g10451' => 'bvu', 'EL10Ac5g10453' => 'bvu', 'EL10Ac5g10894' => 'bvu', 'Eucgr.H00192' => 'egr', 'Eucgr.H00193' => 'egr', 'Eucgr.H00194' => 'egr', 'Eucgr.J01562' => 'egr', 'Eucgr.K03301' => 'egr', 'FAN02G0632' => 'fan', 'FAN05G5378' => 'fan', 'FAN09G3247' => 'fan', 'FAN12G0435' => 'fan', 'FAN12G2426' => 'fan', 'FAN14G1707' => 'fan', 'FAN14G4725' => 'fan', 'FAN15G2071' => 'fan', 'FAN17G3065' => 'fan', 'FAN19G1376' => 'fan', 'FAN20G0354' => 'fan', 'FAN20G2429' => 'fan', 'FAN20G2658' => 'fan', 'FAN24G2343' => 'fan', 'FAN27G2362' => 'fan', 'FAN28G1765' => 'fan', 'FvH4_1g16020' => 'fve', 'FvH4_2g04890' => 'fve', 'FvH4_2g22270' => 'fve', 'FvH4_4g02630' => 'fve', 'FvH4_4g02640' => 'fve', 'FvH4_6g02650' => 'fve', 'Glyma.02G140600' => 'gma', 'Glyma.03G159900' => 'gma', 'Glyma.05G234800' => 'gma', 'Glyma.07G269600' => 'gma', 'Glyma.08G042300' => 'gma', 'Glyma.10G033500' => 'gma', 'Glyma.10G185200' => 'gma', 'Glyma.17G004300' => 'gma', 'Glyma.19G161900' => 'gma', 'Glyma.20G205100' => 'gma', 'Glyma.20G205200' => 'gma', 'Gohir.A01G139101' => 'ghi', 'Gohir.A02G035600' => 'ghi', 'Gohir.A02G117901' => 'ghi', 'Gohir.A07G210100' => 'ghi', 'Gohir.A07G210200' => 'ghi', 'Gohir.A08G061100' => 'ghi', 'Gohir.A09G223000' => 'ghi', 'Gohir.A09G223100' => 'ghi', 'Gohir.A10G113900' => 'ghi', 'Gohir.A10G114000' => 'ghi', 'Gohir.D02G042300' => 'ghi', 'Gohir.D07G216100' => 'ghi', 'Gohir.D07G216200' => 'ghi', 'Gohir.D08G070400' => 'ghi', 'Gohir.D09G225000' => 'ghi', 'Gohir.D09G225100' => 'ghi', 'Gohir.D10G152300' => 'ghi', 'Gohir.D10G153200' => 'ghi', 'Gohir.D11G133701' => 'ghi', 'Gorai.004G074100' => 'gra', 'Gorai.005G046800' => 'gra', 'Gorai.006G246500' => 'gra', 'Gorai.006G246600' => 'gra', 'Gorai.007G142900' => 'gra', 'Gorai.011G171000' => 'gra', 'Gorai.011G171100' => 'gra', 'Gorai.013G104300' => 'gra', 'Gorai.013G104400' => 'gra', 'GSVIVG01000754001' => 'vvi', 'GSVIVG01000756001' => 'vvi', 'GSVIVG01010903001' => 'vvi', 'GSVIVG01017623001' => 'vvi', 'GSVIVG01018113001' => 'vvi', 'GSVIVG01018116001' => 'vvi', 'GSVIVG01018118001' => 'vvi', 'HanXRQChr03g0076211' => 'han', 'HanXRQChr03g0092431' => 'han', 'HanXRQChr03g0092441' => 'han', 'HanXRQChr03g0092591' => 'han', 'HanXRQChr03g0092671' => 'han', 'HanXRQChr03g0092681' => 'han', 'HanXRQChr03g0092691' => 'han', 'HanXRQChr03g0092701' => 'han', 'HanXRQChr03g0092721' => 'han', 'HanXRQChr03g0092731' => 'han', 'HanXRQChr04g0113681' => 'han', 'HanXRQChr10g0281371' => 'han', 'HanXRQChr11g0337141' => 'han', 'HanXRQChr13g0424521' => 'han', 'HanXRQChr13g0424531' => 'han', 'HanXRQChr13g0424541' => 'han', 'HanXRQChr16g0498221' => 'han', 'Haze_04377' => 'cav', 'Haze_11298' => 'cav', 'Haze_24547' => 'cav', 'Haze_24550' => 'cav', 'Haze_26587' => 'cav', 'Hma1.2p1_0650F.1_g195410' => 'hma', 'Hma1.2p1_0893F.1_g233470' => 'hma', 'HPP92_006508' => 'vpl', 'HPP92_024780' => 'vpl', 'Hund02688' => 'sun', 'Hund09380' => 'sun', 'Hund09381' => 'sun', 'Hund09832' => 'sun', 'Hund09833' => 'sun', 'Hund11351' => 'sun', 'Hund11513' => 'sun', 'Lalb_Chr06g0162591' => 'lal', 'Lalb_Chr06g0162601' => 'lal', 'Lalb_Chr06g0169321' => 'lal', 'Lalb_Chr09g0330951' => 'lal', 'Lalb_Chr16g0387631' => 'lal', 'Lalb_Chr21g0306241' => 'lal', 'Lalb_Chr25g0290051' => 'lal', 'Lalb_Chr25g0290061' => 'lal', 'Lalb_Chr25g0290071' => 'lal', 'Lj1g0003876' => 'lja', 'Lj1P1207T36' => 'lonja', 'Lj2C1156G12' => 'lonja', 'Lj3A793G39' => 'lonja', 'Lj3C580G2' => 'lonja', 'Lj3C780G2' => 'lonja', 'Lj3C780T4' => 'lonja', 'Lj3C793G9' => 'lonja', 'Lj4g0012960' => 'lja', 'Lj5g0021252' => 'lja', 'Lj5g0021484' => 'lja', 'Lj5g0024528' => 'lja', 'Lj6A399T12' => 'lonja', 'Lj6A656G65' => 'lonja', 'Lsat_1_v5_gn_3_125500' => 'lsa', 'Lsat_1_v5_gn_3_125540' => 'lsa', 'Lsat_1_v5_gn_5_72701' => 'lsa', 'Lsat_1_v5_gn_8_91560' => 'lsa', 'Lsat_1_v5_gn_9_9640' => 'lsa', 'Manes.01G200600' => 'mes', 'Manes.01G200700' => 'mes', 'Manes.03G168900' => 'mes', 'Manes.03G169000' => 'mes', 'Manes.05G085801' => 'mes', 'Manes.05G086200' => 'mes', 'Manes.15G036700' => 'mes', 'Manes.15G036900' => 'mes', 'Mapoly0004s0172' => 'mpo', 'Mapoly0023s0001' => 'mpo', 'Mapoly0142s0012' => 'mpo', 'MBI01_g32854_MAGBIO' => 'mbi', 'MBI11_g24427_MAGBIO' => 'mbi', 'MBI11_g47319_MAGBIO' => 'mbi', 'MCO01G433' => 'mco', 'MD00G1187800' => 'mdo', 'MD04G1226500' => 'mdo', 'MD05G1203900' => 'mdo', 'MD10G1191100' => 'mdo', 'MD12G1243500' => 'mdo', 'MD13G1207000' => 'mdo', 'MD13G1207100' => 'mdo', 'MD16G1208600' => 'mdo', 'Medtr1g050352' => 'mtr', 'Medtr1g070385' => 'mtr', 'Medtr1g070450' => 'mtr', 'Medtr1g075200' => 'mtr', 'Medtr1g075250' => 'mtr', 'Medtr1g075260' => 'mtr', 'Medtr1g475250' => 'mtr', 'Medtr4g075450' => 'mtr', 'Medtr7g096300' => 'mtr', 'Medtr8g105110' => 'mtr', 'MELO3C006470.2' => 'cme', 'MELO3C006471.2' => 'cme', 'MELO3C020772.2' => 'cme', 'MELO3C026780.2' => 'cme', 'MELO3C026781.2' => 'cme', 'Migut.D00390' => 'egut', 'Migut.G00435' => 'egut', 'Migut.G00436' => 'egut', 'Migut.G00718' => 'egut', 'MSTRG.21891' => 'ama', 'MSTRG.26910' => 'ama', 'MSTRG.4099' => 'ama', 'MSTRG.9925' => 'ama', 'Nitab4.5_0000165g0010' => 'nta', 'Nitab4.5_0000209g0180' => 'nta', 'Nitab4.5_0000244g0440' => 'nta', 'Nitab4.5_0000525g0220' => 'nta', 'Nitab4.5_0001597g0020' => 'nta', 'Nitab4.5_0001878g0040' => 'nta', 'Nitab4.5_0001878g0060' => 'nta', 'Nitab4.5_0002838g0100' => 'nta', 'Nitab4.5_0002838g0120' => 'nta', 'Nitab4.5_0004798g0030' => 'nta', 'Nitab4.5_0005420g0010' => 'nta', 'Nitab4.5_0005507g0010' => 'nta', 'Nitab4.5_0005574g0020' => 'nta', 'Nitab4.5_0005838g0010' => 'nta', 'Nitab4.5_0010580g0020' => 'nta', 'Nn1g02599' => 'nnu', 'Nn1g02608' => 'nnu', 'Nn3g17742' => 'nnu', 'Nn3g19534' => 'nnu', 'Nn3g19535' => 'nnu', 'Oeu008790.1' => 'oeu', 'Oeu008792.1' => 'oeu', 'Oeu032590.1' => 'oeu', 'Oeu035349.1' => 'oeu', 'Oeu049791.1' => 'oeu', 'Os01g0774500' => 'osa', 'Os03g0628800' => 'osa', 'Os03g0798600' => 'osa', 'Os05g0508800' => 'osa', 'Peaxi162Scf00036g02018' => 'pax', 'Peaxi162Scf00578g00032' => 'pax', 'Peaxi162Scf00578g00317' => 'pax', 'Peaxi162Scf00785g00114' => 'pax', 'Peaxi162Scf00813g00119' => 'pax', 'Peaxi162Scf00906g00227' => 'pax', 'PGR004G0875' => 'pgr', 'PGR004G2424' => 'pgr', 'PGR031G1239' => 'pgr', 'PGR031G2474' => 'pgr', 'PGR044G0423' => 'pgr', 'PGSC0003DMG400001128' => 'stu', 'PGSC0003DMG400007336' => 'stu', 'PGSC0003DMG400016318' => 'stu', 'PGSC0003DMG400016319' => 'stu', 'PGSC0003DMG400018074' => 'stu', 'Phvul.001G157700' => 'pvu', 'Phvul.002G148550' => 'pvu', 'Phvul.002G320200' => 'pvu', 'Phvul.003G089200' => 'pvu', 'Phvul.007G126000' => 'pvu', 'Phvul.007G126100' => 'pvu', 'Phvul.007G178000' => 'pvu', 'Phvul.007G178200' => 'pvu', 'Potri.002G043000' => 'ptr', 'Potri.002G043200' => 'ptr', 'Potri.003G123750' => 'ptr', 'Potri.005G055401' => 'ptr', 'Potri.005G219700' => 'ptr', 'Potri.005G220000' => 'ptr', 'Potri.008G161901' => 'ptr', 'Potri.008G162000' => 'ptr', 'Potri.008G162400' => 'ptr', 'Potri.010G076900' => 'ptr', 'Pp3c12_9180' => 'ppa', 'Pp3c13_19770' => 'ppa', 'Pp3c14_22950' => 'ppa', 'Pp3c16_12160' => 'ppa', 'Pp3c27_7820' => 'ppa', 'Pp3c2_3490' => 'ppa', 'Pp3c3_23700' => 'ppa', 'Pp3c3_36520' => 'ppa', 'Pp3c4_15250' => 'ppa', 'PRCOL_00007002' => 'pco', 'Prupe.1G030600' => 'ppe', 'Prupe.1G030700' => 'ppe', 'Prupe.6G345200' => 'ppe', 'Prupe.8G230300' => 'ppe', 'Prupe.8G230500' => 'ppe', 'Psat3g059600' => 'psa', 'Psat5g200920' => 'psa', 'Psat6g056440' => 'psa', 'Psat6g057360' => 'psa', 'Psat6g134120' => 'psa', 'Psat6g134160' => 'psa', 'Psat7g008640' => 'psa', 'Psat7g185240' => 'psa', 'PSO017G1330' => 'pso', 'PSO063G6097' => 'pso', 'PSO170G0835' => 'pso', 'PSO170G2499' => 'pso', 'PSO210G5058' => 'pso', 'PSO210G6154' => 'pso', 'PSO585G0031' => 'pso', 'PSO832G0264' => 'pso', 'PSO832G4288' => 'pso', 'QL03p027355' => 'qlo', 'QL03p027430' => 'qlo', 'QL04p081380' => 'qlo', 'QL06p015642' => 'qlo', 'QL06p015650' => 'qlo', 'QL06p015686' => 'qlo', 'QL12p042927' => 'qlo', 'QL93p1863_0035' => 'qlo', 'RcHm_v2.0_Chr3g0450581' => 'rch', 'RcHm_v2.0_Chr4g0390371' => 'rch', 'RcHm_v2.0_Chr4g0390381' => 'rch', 'RcHm_v2.0_Chr4g0390491' => 'rch', 'RcHm_v2.0_Chr4g0390501' => 'rch', 'RcHm_v2.0_Chr6g0289231' => 'rch', 'Rhsim04G0190400' => 'rsi', 'Rhsim04G0190500' => 'rsi', 'Rhsim04G0190600' => 'rsi', 'Rhsim13G0031400' => 'rsi', 'Rhsim13G0165600' => 'rsi', 'RhsimUnG0114600' => 'rsi', 'RhsimUnG0114700' => 'rsi', 'Sabra02G0034800' => 'sbr', 'Sabra02G0035100' => 'sbr', 'Sabra05G0168600' => 'sbr', 'Sabra05G0168800' => 'sbr', 'Sabra08G0123700' => 'sbr', 'Sabra10G0031900' => 'sbr', 'Sabra13G0039000' => 'sbr', 'SalBow2G0782' => 'sbo', 'SalBow2G1403' => 'sbo', 'SalBow4G0074' => 'sbo', 'SalBow4G2635' => 'sbo', 'SalBow5G3010' => 'sbo', 'Sc05g0000870' => 'sci', 'Sc05g0000890' => 'sci', 'Sc13g0005000' => 'sci', 'Sc13g0005030' => 'sci', 'Sc19g0003790' => 'sci', 'Sc19g0003800' => 'sci', 'Sed0003467' => 'sed', 'Sed0009355' => 'sed', 'Sed0009894' => 'sed', 'Sed0011972' => 'sed', 'Sed0021483' => 'sed', 'Sed0021750' => 'sed', 'Sed0026279' => 'sed', 'SEGI_05312' => 'sgi', 'SEGI_10112' => 'sgi', 'SEGI_15835' => 'sgi', 'SEGI_30386' => 'sgi', 'SEGI_34122' => 'sgi', 'SEGI_35063' => 'sgi', 'SGA_v2.0_scaffold101G29794' => 'sas', 'SGA_v2.0_scaffold1G00573' => 'sas', 'SGA_v2.0_scaffold79G25637' => 'sas', 'SGA_v2.0_scaffold88G27283' => 'sas', 'SGA_v2.0_scaffold88G27285' => 'sas', 'SGA_v2.0_scaffold88G27331' => 'sas', 'SHI09937' => 'shi', 'SMO119G0302' => 'smo', 'SMO137G0231' => 'smo', 'SMO367G1151' => 'smo', 'Solyc02g082000.3' => 'sly', 'Solyc06g031670.3' => 'sly', 'Solyc06g053810.3' => 'sly', 'Solyc07g025457.1' => 'sly', 'Solyc08g059740.1' => 'sly', 'Solyc08g059750.3' => 'sly', 'Solyc09g083370.3' => 'sly', 'Solyc12g038950.3' => 'sly', 'Sopen02g026630' => 'spe', 'Sopen06g018930' => 'spe', 'Sopen06g018940' => 'spe', 'Sopen08g009460' => 'spe', 'Sopen09g032290' => 'spe', 'Sp1g03080' => 'spa', 'Sp1g03090' => 'spa', 'Sp1g05480' => 'spa', 'Sp2g07860' => 'spa', 'Sp2g08430' => 'spa', 'Sp2g08440' => 'spa', 'Sp2g26200' => 'spa', 'Sp4g13170' => 'spa', 'Sp6g33840' => 'spa', 'SpUn1204_0010' => 'spa', 'TAR365G0908' => 'tar', 'TAR381G1270' => 'tar', 'TAR381G1651' => 'tar', 'TAR625G1131' => 'tar', 'TAR633G0962' => 'tar', 'TAR633G1729' => 'tar', 'TAR633G1864' => 'tar', 'TAR636G0221' => 'tar', 'TAR636G0314' => 'tar', 'TAR636G3202' => 'tar', 'THA.LOC104800805' => 'tha', 'THA.LOC104801096' => 'tha', 'THA.LOC104801555' => 'tha', 'THA.LOC104808491' => 'tha', 'THA.LOC104808595' => 'tha', 'THA.LOC104815985' => 'tha', 'THA.LOC104822250' => 'tha', 'THA.LOC104826071' => 'tha', 'Thecc.01G265200' => 'tca', 'Thecc.01G265300' => 'tca', 'Thecc.01G265700' => 'tca', 'Thecc.03G109100' => 'tca', 'Thecc.04G245900' => 'tca', 'Thecc.04G246000' => 'tca', 'Thhalv10003334m.g' => 'esa', 'Thhalv10005508m.g' => 'esa', 'Thhalv10005643m.g' => 'esa', 'Thhalv10007316m.g' => 'esa', 'Thhalv10009006m.g' => 'esa', 'Thhalv10009309m.g' => 'esa', 'Thhalv10014917m.g' => 'esa', 'Thhalv10014919m.g' => 'esa', 'Thhalv10015393m.g' => 'esa', 'Thhalv10016515m.g' => 'esa', 'Thhalv10029242m.g' => 'esa', 'TPR.G16654' => 'tpr', 'TPR.G20589' => 'tpr', 'TPR.G23029' => 'tpr', 'TPR.G27731' => 'tpr', 'TPR.G28889' => 'tpr', 'TPR.G28899' => 'tpr', 'TPR.G30846' => 'tpr', 'TPR.G5452' => 'tpr', 'TPR.G5713' => 'tpr', 'TPR.G9046' => 'tpr', 'TPR.G9061' => 'tpr', 'TWI09G1075' => 'twi', 'TWI12G0806' => 'twi', 'TWI18G0108' => 'twi', 'TWI53G1361' => 'twi', 'TWI73G0185' => 'twi', 'TWI73G0427' => 'twi', 'unitig_37.g12001' => 'ugi', 'unitig_747.g21660' => 'ugi', 'unitig_748.g7232' => 'ugi', 'unitig_748.g7315' => 'ugi', 'unitig_85.g27262' => 'ugi', 'unitig_92.g28220' => 'ugi', 'vmacro02632' => 'vma', 'vmacro08410' => 'vma', 'vmacro08411' => 'vma', 'vmacro15407' => 'vma', 'VMungo0251G3619' => 'vmu', 'VMungo0720G1204' => 'vmu', 'VMungo0720G1918' => 'vmu', 'VMungo0720G2387' => 'vmu', 'VMungo0720G2961' => 'vmu', 'VMungo1215G2154' => 'vmu', 'VMungo1383G2411' => 'vmu', 'Zm00001eb051130' => 'zma', 'Zm00001eb116830' => 'zma', 'Zm00001eb116850' => 'zma', 'Zm00001eb151740' => 'zma', 'Zm00001eb292360' => 'zma', 'Zm00001eb301640' => 'zma' ), 'gf_id' => 'HOM05D000856', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000856' ), 'data_identifier' => 'HOM05D000856', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000856', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p00010' => 'bna', 'A03p04160' => 'bna', 'A03p17160' => 'bna', 'A04p23370' => 'bna', 'A05p14860' => 'bna', 'A08p37020' => 'bna', 'A09p08050' => 'bna', 'A09p66800' => 'bna', 'A09p67940' => 'bna', 'A10p02680' => 'bna', 'A10p05320' => 'bna', 'Aa31LG1G20560' => 'aar', 'Aa31LG1G20610' => 'aar', 'Aa31LG1G7810' => 'aar', 'Aa31LG5G3590' => 'aar', 'Aa31LG5G6140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3819' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4683' => 'aag', 'Actinidia04480' => 'ach', 'Actinidia05466' => 'ach', 'Actinidia08445' => 'ach', 'Actinidia21170' => 'ach', 'Actinidia24812' => 'ach', 'Actinidia24951' => 'ach', 'Actinidia40088' => 'ach', 'Ah.02g111660' => 'amhyb', 'Ah.11g048900' => 'amhyb', 'Ah.11g049910' => 'amhyb', 'AL1G13870' => 'aly', 'AL1G13880' => 'aly', 'AL1G16760' => 'aly', 'AL390U10020' => 'aly', 'AL4G25520' => 'aly', 'AL6G19890' => 'aly', 'AL6G19900' => 'aly', 'AL6G19910' => 'aly', 'AL8G40100' => 'aly', 'Aqoxy2G03562' => 'aox', 'Aqoxy5G00316' => 'aox', 'Aqoxy5G00926' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1628KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1H403S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2FU6SJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.882I6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8YRY2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YN1SN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AF70II' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZA8L1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F916KL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHRD8H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KTZ8QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S22EMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8M29T' => 'arhy', 'AT1G04270' => 'ath', 'AT1G04280' => 'ath', 'AT1G06750' => 'ath', 'AT1G33850' => 'ath', 'AT2G30630' => 'ath', 'AT5G09490' => 'ath', 'AT5G09500' => 'ath', 'AT5G09510' => 'ath', 'AT5G43640' => 'ath', 'AT5G63070' => 'ath', 'ATR0605G315' => 'atr', 'Atru.chr11.175' => 'acertr', 'Atru.chr11.653' => 'acertr', 'Atru.chr3.1616' => 'acertr', 'Atru.chr4.2230' => 'acertr', 'Atru.chr4.2232' => 'acertr', 'Atru.chr5.1598' => 'acertr', 'Atru.chr5.1600' => 'acertr', 'Atru.chr5.2188' => 'acertr', 'AUR62008326' => 'cqu', 'AUR62011922' => 'cqu', 'AUR62011924' => 'cqu', 'AUR62021771' => 'cqu', 'AUR62032237' => 'cqu', 'AUR62032240' => 'cqu', 'BcaB01g05572' => 'bca', 'BcaB02g10337' => 'bca', 'BcaB04g19944' => 'bca', 'BcaB05g21548' => 'bca', 'BcaB05g21549' => 'bca', 'BcaB05g23227' => 'bca', 'BcaB06g26256' => 'bca', 'BcaB06g26257' => 'bca', 'BcaB06g28379' => 'bca', 'BcaC02g11159' => 'bca', 'BcaC03g13258' => 'bca', 'BcaC03g13259' => 'bca', 'BcaC05g24456' => 'bca', 'BcaC05g24457' => 'bca', 'BcaC07g36922' => 'bca', 'BcaC07g36923' => 'bca', 'BcaC07g42050' => 'bca', 'BcaC07g42176' => 'bca', 'BcaC07g42195' => 'bca', 'BcaC07g42196' => 'bca', 'BcaNung06674' => 'bca', 'BolC2t06351H' => 'bol', 'BolC2t06352H' => 'bol', 'BolC3t12993H' => 'bol', 'BolC4t23525H' => 'bol', 'BolC4t27475H' => 'bol', 'BolC5t29025H' => 'bol', 'BolC5t29026H' => 'bol', 'BolC8t46898H' => 'bol', 'BolC8t46899H' => 'bol', 'BolC8t52630H' => 'bol', 'BolC8t52765H' => 'bol', 'BolC9t53824H' => 'bol', 'BraA03t09760Z' => 'bra', 'BraA03t10990Z' => 'bra', 'BraA05t20413Z' => 'bra', 'BraA08t35602Z' => 'bra', 'BraA09t36458Z' => 'bra', 'BraA09t42018Z' => 'bra', 'BraA09t42129Z' => 'bra', 'BraA10t42536Z' => 'bra', 'BraA10t42537Z' => 'bra', 'C01p10690' => 'bna', 'C02p03890' => 'bna', 'C02p03900' => 'bna', 'C03p04620' => 'bna', 'C04p19870' => 'bna', 'C04p59670' => 'bna', 'C05p02460' => 'bna', 'C05p02470' => 'bna', 'C08p00980' => 'bna', 'C08p00990' => 'bna', 'C08p51030' => 'bna', 'C08p52360' => 'bna', 'C09p09120' => 'bna', 'CAN.G19.15' => 'can', 'CAN.G251.10' => 'can', 'CAN.G251.9' => 'can', 'CAN.G398.24' => 'can', 'CAN.G410.32' => 'can', 'CAN.G881.2' => 'can', 'CANSAT01G3025' => 'cansat', 'CANSAT78G1211' => 'cansat', 'CANSAT78G1218' => 'cansat', 'CANSAT78G1521' => 'cansat', 'CANSAT78G1670' => 'cansat', 'CARHR003600' => 'chi', 'CARHR003610' => 'chi', 'CARHR006290' => 'chi', 'CARHR006430' => 'chi', 'CARHR124110' => 'chi', 'CARHR203870' => 'chi', 'CARHR203880' => 'chi', 'CARHR203890' => 'chi', 'CARHR276880' => 'chi', 'Carub.0001s0346' => 'cru', 'Carub.0001s0347' => 'cru', 'Carub.0001s0607' => 'cru', 'Carub.0003s2768' => 'cru', 'Carub.0003s2769' => 'cru', 'Carub.0004s1178' => 'cru', 'Carub.0006s0806' => 'cru', 'Carub.0006s0807' => 'cru', 'Carub.0006s0808' => 'cru', 'Carub.0008s0501' => 'cru', 'Carub.0008s2379' => 'cru', 'Ca_08655_v3' => 'car', 'Ca_08922_v3' => 'car', 'Ca_08923_v3' => 'car', 'Ca_09119_v3' => 'car', 'Ca_09703_v3' => 'car', 'Ca_09705_v3' => 'car', 'Ca_09835_v3' => 'car', 'Ca_26403_v3' => 'car', 'Ca_30719_v3' => 'car', 'CBR_g17958' => 'cbr', 'CBR_g40516' => 'cbr', 'Cc00_g05350' => 'ccan', 'Cc01_g18690' => 'ccan', 'Cc03_g04830' => 'ccan', 'Cc03_g04850' => 'ccan', 'CDE02G4469' => 'cde', 'CDE06G0883' => 'cde', 'CDE06G1295' => 'cde', 'CDE06G1390' => 'cde', 'CDE07G0584' => 'cde', 'CDE07G1084' => 'cde', 'CDE08G1259' => 'cde', 'Cfa002341' => 'cfa', 'Cfa024337' => 'cfa', 'Ciclev10004749m.g' => 'ccl', 'Ciclev10006127m.g' => 'ccl', 'Ciclev10019720m.g' => 'ccl', 'Ciclev10022652m.g' => 'ccl', 'CiPaw.01G190400' => 'cil', 'CiPaw.01G190500' => 'cil', 'CiPaw.02G116400' => 'cil', 'CiPaw.02G116500' => 'cil', 'CiPaw.04G183000' => 'cil', 'CiPaw.04G183300' => 'cil', 'ClCG05G004610' => 'cla', 'ClCG05G004620' => 'cla', 'ClCG06G006730' => 'cla', 'ClCG06G006740' => 'cla', 'ClCG11G003690' => 'cla', 'COL.COLO4_08276' => 'col', 'COL.COLO4_08277' => 'col', 'COL.COLO4_15787' => 'col', 'COL.COLO4_15789' => 'col', 'Cpa.g.c44815' => 'cpa', 'Cpa.g.sc52.144' => 'cpa', 'Cpa.g.sc58.46' => 'cpa', 'Cpa.g.sc58.47' => 'cpa', 'Cre08.g360900' => 'cre', 'CsaV3_2G013030' => 'csa', 'CsaV3_2G013050' => 'csa', 'CsaV3_2G015620' => 'csa', 'CsaV3_3G012590' => 'csa', 'CsaV3_3G012600' => 'csa', 'CSS0001641' => 'camsi', 'CSS0008310' => 'camsi', 'CSS0013011' => 'camsi', 'CSS0017147' => 'camsi', 'CSS0022970' => 'camsi', 'CSS0025655' => 'camsi', 'CSS0028665' => 'camsi', 'CSS0029117' => 'camsi', 'CSS0032024' => 'camsi', 'CSS0039681' => 'camsi', 'CSS0046516' => 'camsi', 'CSS0050307' => 'camsi', 'DCAR_005871' => 'dca', 'DCAR_007342' => 'dca', 'DCAR_024228' => 'dca', 'DCAR_027277' => 'dca', 'DCAR_030718' => 'dca', 'Dinv20287' => 'din', 'Dinv22461' => 'din', 'Dinv22464' => 'din', 'Dinv29912' => 'din', 'Dinv29913' => 'din', 'Dinv34580' => 'din', 'Dinv34582' => 'din', 'Dinv44632' => 'din', 'Duzib052G0266' => 'dzi', 'Duzib133G0907' => 'dzi', 'Duzib133G1034' => 'dzi', 'Duzib138G0207' => 'dzi', 'Duzib138G0491' => 'dzi', 'Duzib151G0812' => 'dzi', 'Duzib151G1166' => 'dzi', 'Duzib168G0192' => 'dzi', 'Duzib211G0077' => 'dzi', 'Duzib212G0429' => 'dzi', 'Duzib212G0472' => 'dzi', 'ECA233G2617' => 'eca', 'ECA236G4188' => 'eca', 'ECA240G0936' => 'eca', 'ECA240G1129' => 'eca', 'ECA247G0623' => 'eca', 'EL10Ac5g10451' => 'bvu', 'EL10Ac5g10453' => 'bvu', 'EL10Ac5g10894' => 'bvu', 'Eucgr.H00192' => 'egr', 'Eucgr.H00193' => 'egr', 'Eucgr.H00194' => 'egr', 'Eucgr.J01562' => 'egr', 'Eucgr.K03301' => 'egr', 'FAN02G0632' => 'fan', 'FAN05G5378' => 'fan', 'FAN09G3247' => 'fan', 'FAN12G0435' => 'fan', 'FAN12G2426' => 'fan', 'FAN14G1707' => 'fan', 'FAN14G4725' => 'fan', 'FAN15G2071' => 'fan', 'FAN17G3065' => 'fan', 'FAN19G1376' => 'fan', 'FAN20G0354' => 'fan', 'FAN20G2429' => 'fan', 'FAN20G2658' => 'fan', 'FAN24G2343' => 'fan', 'FAN27G2362' => 'fan', 'FAN28G1765' => 'fan', 'FvH4_1g16020' => 'fve', 'FvH4_2g04890' => 'fve', 'FvH4_2g22270' => 'fve', 'FvH4_4g02630' => 'fve', 'FvH4_4g02640' => 'fve', 'FvH4_6g02650' => 'fve', 'Glyma.02G140600' => 'gma', 'Glyma.03G159900' => 'gma', 'Glyma.05G234800' => 'gma', 'Glyma.07G269600' => 'gma', 'Glyma.08G042300' => 'gma', 'Glyma.10G033500' => 'gma', 'Glyma.10G185200' => 'gma', 'Glyma.17G004300' => 'gma', 'Glyma.19G161900' => 'gma', 'Glyma.20G205100' => 'gma', 'Glyma.20G205200' => 'gma', 'Gohir.A01G139101' => 'ghi', 'Gohir.A02G035600' => 'ghi', 'Gohir.A02G117901' => 'ghi', 'Gohir.A07G210100' => 'ghi', 'Gohir.A07G210200' => 'ghi', 'Gohir.A08G061100' => 'ghi', 'Gohir.A09G223000' => 'ghi', 'Gohir.A09G223100' => 'ghi', 'Gohir.A10G113900' => 'ghi', 'Gohir.A10G114000' => 'ghi', 'Gohir.D02G042300' => 'ghi', 'Gohir.D07G216100' => 'ghi', 'Gohir.D07G216200' => 'ghi', 'Gohir.D08G070400' => 'ghi', 'Gohir.D09G225000' => 'ghi', 'Gohir.D09G225100' => 'ghi', 'Gohir.D10G152300' => 'ghi', 'Gohir.D10G153200' => 'ghi', 'Gohir.D11G133701' => 'ghi', 'Gorai.004G074100' => 'gra', 'Gorai.005G046800' => 'gra', 'Gorai.006G246500' => 'gra', 'Gorai.006G246600' => 'gra', 'Gorai.007G142900' => 'gra', 'Gorai.011G171000' => 'gra', 'Gorai.011G171100' => 'gra', 'Gorai.013G104300' => 'gra', 'Gorai.013G104400' => 'gra', 'GSVIVG01000754001' => 'vvi', 'GSVIVG01000756001' => 'vvi', 'GSVIVG01010903001' => 'vvi', 'GSVIVG01017623001' => 'vvi', 'GSVIVG01018113001' => 'vvi', 'GSVIVG01018116001' => 'vvi', 'GSVIVG01018118001' => 'vvi', 'HanXRQChr03g0076211' => 'han', 'HanXRQChr03g0092431' => 'han', 'HanXRQChr03g0092441' => 'han', 'HanXRQChr03g0092591' => 'han', 'HanXRQChr03g0092671' => 'han', 'HanXRQChr03g0092681' => 'han', 'HanXRQChr03g0092691' => 'han', 'HanXRQChr03g0092701' => 'han', 'HanXRQChr03g0092721' => 'han', 'HanXRQChr03g0092731' => 'han', 'HanXRQChr04g0113681' => 'han', 'HanXRQChr10g0281371' => 'han', 'HanXRQChr11g0337141' => 'han', 'HanXRQChr13g0424521' => 'han', 'HanXRQChr13g0424531' => 'han', 'HanXRQChr13g0424541' => 'han', 'HanXRQChr16g0498221' => 'han', 'Haze_04377' => 'cav', 'Haze_11298' => 'cav', 'Haze_24547' => 'cav', 'Haze_24550' => 'cav', 'Haze_26587' => 'cav', 'Hma1.2p1_0650F.1_g195410' => 'hma', 'Hma1.2p1_0893F.1_g233470' => 'hma', 'HPP92_006508' => 'vpl', 'HPP92_024780' => 'vpl', 'Hund02688' => 'sun', 'Hund09380' => 'sun', 'Hund09381' => 'sun', 'Hund09832' => 'sun', 'Hund09833' => 'sun', 'Hund11351' => 'sun', 'Hund11513' => 'sun', 'Lalb_Chr06g0162591' => 'lal', 'Lalb_Chr06g0162601' => 'lal', 'Lalb_Chr06g0169321' => 'lal', 'Lalb_Chr09g0330951' => 'lal', 'Lalb_Chr16g0387631' => 'lal', 'Lalb_Chr21g0306241' => 'lal', 'Lalb_Chr25g0290051' => 'lal', 'Lalb_Chr25g0290061' => 'lal', 'Lalb_Chr25g0290071' => 'lal', 'Lj1g0003876' => 'lja', 'Lj1P1207T36' => 'lonja', 'Lj2C1156G12' => 'lonja', 'Lj3A793G39' => 'lonja', 'Lj3C580G2' => 'lonja', 'Lj3C780G2' => 'lonja', 'Lj3C780T4' => 'lonja', 'Lj3C793G9' => 'lonja', 'Lj4g0012960' => 'lja', 'Lj5g0021252' => 'lja', 'Lj5g0021484' => 'lja', 'Lj5g0024528' => 'lja', 'Lj6A399T12' => 'lonja', 'Lj6A656G65' => 'lonja', 'Lsat_1_v5_gn_3_125500' => 'lsa', 'Lsat_1_v5_gn_3_125540' => 'lsa', 'Lsat_1_v5_gn_5_72701' => 'lsa', 'Lsat_1_v5_gn_8_91560' => 'lsa', 'Lsat_1_v5_gn_9_9640' => 'lsa', 'Manes.01G200600' => 'mes', 'Manes.01G200700' => 'mes', 'Manes.03G168900' => 'mes', 'Manes.03G169000' => 'mes', 'Manes.05G085801' => 'mes', 'Manes.05G086200' => 'mes', 'Manes.15G036700' => 'mes', 'Manes.15G036900' => 'mes', 'Mapoly0004s0172' => 'mpo', 'Mapoly0023s0001' => 'mpo', 'Mapoly0142s0012' => 'mpo', 'MBI01_g32854_MAGBIO' => 'mbi', 'MBI11_g24427_MAGBIO' => 'mbi', 'MBI11_g47319_MAGBIO' => 'mbi', 'MCO01G433' => 'mco', 'MD00G1187800' => 'mdo', 'MD04G1226500' => 'mdo', 'MD05G1203900' => 'mdo', 'MD10G1191100' => 'mdo', 'MD12G1243500' => 'mdo', 'MD13G1207000' => 'mdo', 'MD13G1207100' => 'mdo', 'MD16G1208600' => 'mdo', 'Medtr1g050352' => 'mtr', 'Medtr1g070385' => 'mtr', 'Medtr1g070450' => 'mtr', 'Medtr1g075200' => 'mtr', 'Medtr1g075250' => 'mtr', 'Medtr1g075260' => 'mtr', 'Medtr1g475250' => 'mtr', 'Medtr4g075450' => 'mtr', 'Medtr7g096300' => 'mtr', 'Medtr8g105110' => 'mtr', 'MELO3C006470.2' => 'cme', 'MELO3C006471.2' => 'cme', 'MELO3C020772.2' => 'cme', 'MELO3C026780.2' => 'cme', 'MELO3C026781.2' => 'cme', 'Migut.D00390' => 'egut', 'Migut.G00435' => 'egut', 'Migut.G00436' => 'egut', 'Migut.G00718' => 'egut', 'MSTRG.21891' => 'ama', 'MSTRG.26910' => 'ama', 'MSTRG.4099' => 'ama', 'MSTRG.9925' => 'ama', 'Nitab4.5_0000165g0010' => 'nta', 'Nitab4.5_0000209g0180' => 'nta', 'Nitab4.5_0000244g0440' => 'nta', 'Nitab4.5_0000525g0220' => 'nta', 'Nitab4.5_0001597g0020' => 'nta', 'Nitab4.5_0001878g0040' => 'nta', 'Nitab4.5_0001878g0060' => 'nta', 'Nitab4.5_0002838g0100' => 'nta', 'Nitab4.5_0002838g0120' => 'nta', 'Nitab4.5_0004798g0030' => 'nta', 'Nitab4.5_0005420g0010' => 'nta', 'Nitab4.5_0005507g0010' => 'nta', 'Nitab4.5_0005574g0020' => 'nta', 'Nitab4.5_0005838g0010' => 'nta', 'Nitab4.5_0010580g0020' => 'nta', 'Nn1g02599' => 'nnu', 'Nn1g02608' => 'nnu', 'Nn3g17742' => 'nnu', 'Nn3g19534' => 'nnu', 'Nn3g19535' => 'nnu', 'Oeu008790.1' => 'oeu', 'Oeu008792.1' => 'oeu', 'Oeu032590.1' => 'oeu', 'Oeu035349.1' => 'oeu', 'Oeu049791.1' => 'oeu', 'Os01g0774500' => 'osa', 'Os03g0628800' => 'osa', 'Os03g0798600' => 'osa', 'Os05g0508800' => 'osa', 'Peaxi162Scf00036g02018' => 'pax', 'Peaxi162Scf00578g00032' => 'pax', 'Peaxi162Scf00578g00317' => 'pax', 'Peaxi162Scf00785g00114' => 'pax', 'Peaxi162Scf00813g00119' => 'pax', 'Peaxi162Scf00906g00227' => 'pax', 'PGR004G0875' => 'pgr', 'PGR004G2424' => 'pgr', 'PGR031G1239' => 'pgr', 'PGR031G2474' => 'pgr', 'PGR044G0423' => 'pgr', 'PGSC0003DMG400001128' => 'stu', 'PGSC0003DMG400007336' => 'stu', 'PGSC0003DMG400016318' => 'stu', 'PGSC0003DMG400016319' => 'stu', 'PGSC0003DMG400018074' => 'stu', 'Phvul.001G157700' => 'pvu', 'Phvul.002G148550' => 'pvu', 'Phvul.002G320200' => 'pvu', 'Phvul.003G089200' => 'pvu', 'Phvul.007G126000' => 'pvu', 'Phvul.007G126100' => 'pvu', 'Phvul.007G178000' => 'pvu', 'Phvul.007G178200' => 'pvu', 'Potri.002G043000' => 'ptr', 'Potri.002G043200' => 'ptr', 'Potri.003G123750' => 'ptr', 'Potri.005G055401' => 'ptr', 'Potri.005G219700' => 'ptr', 'Potri.005G220000' => 'ptr', 'Potri.008G161901' => 'ptr', 'Potri.008G162000' => 'ptr', 'Potri.008G162400' => 'ptr', 'Potri.010G076900' => 'ptr', 'Pp3c12_9180' => 'ppa', 'Pp3c13_19770' => 'ppa', 'Pp3c14_22950' => 'ppa', 'Pp3c16_12160' => 'ppa', 'Pp3c27_7820' => 'ppa', 'Pp3c2_3490' => 'ppa', 'Pp3c3_23700' => 'ppa', 'Pp3c3_36520' => 'ppa', 'Pp3c4_15250' => 'ppa', 'PRCOL_00007002' => 'pco', 'Prupe.1G030600' => 'ppe', 'Prupe.1G030700' => 'ppe', 'Prupe.6G345200' => 'ppe', 'Prupe.8G230300' => 'ppe', 'Prupe.8G230500' => 'ppe', 'Psat3g059600' => 'psa', 'Psat5g200920' => 'psa', 'Psat6g056440' => 'psa', 'Psat6g057360' => 'psa', 'Psat6g134120' => 'psa', 'Psat6g134160' => 'psa', 'Psat7g008640' => 'psa', 'Psat7g185240' => 'psa', 'PSO017G1330' => 'pso', 'PSO063G6097' => 'pso', 'PSO170G0835' => 'pso', 'PSO170G2499' => 'pso', 'PSO210G5058' => 'pso', 'PSO210G6154' => 'pso', 'PSO585G0031' => 'pso', 'PSO832G0264' => 'pso', 'PSO832G4288' => 'pso', 'QL03p027355' => 'qlo', 'QL03p027430' => 'qlo', 'QL04p081380' => 'qlo', 'QL06p015642' => 'qlo', 'QL06p015650' => 'qlo', 'QL06p015686' => 'qlo', 'QL12p042927' => 'qlo', 'QL93p1863_0035' => 'qlo', 'RcHm_v2.0_Chr3g0450581' => 'rch', 'RcHm_v2.0_Chr4g0390371' => 'rch', 'RcHm_v2.0_Chr4g0390381' => 'rch', 'RcHm_v2.0_Chr4g0390491' => 'rch', 'RcHm_v2.0_Chr4g0390501' => 'rch', 'RcHm_v2.0_Chr6g0289231' => 'rch', 'Rhsim04G0190400' => 'rsi', 'Rhsim04G0190500' => 'rsi', 'Rhsim04G0190600' => 'rsi', 'Rhsim13G0031400' => 'rsi', 'Rhsim13G0165600' => 'rsi', 'RhsimUnG0114600' => 'rsi', 'RhsimUnG0114700' => 'rsi', 'Sabra02G0034800' => 'sbr', 'Sabra02G0035100' => 'sbr', 'Sabra05G0168600' => 'sbr', 'Sabra05G0168800' => 'sbr', 'Sabra08G0123700' => 'sbr', 'Sabra10G0031900' => 'sbr', 'Sabra13G0039000' => 'sbr', 'SalBow2G0782' => 'sbo', 'SalBow2G1403' => 'sbo', 'SalBow4G0074' => 'sbo', 'SalBow4G2635' => 'sbo', 'SalBow5G3010' => 'sbo', 'Sc05g0000870' => 'sci', 'Sc05g0000890' => 'sci', 'Sc13g0005000' => 'sci', 'Sc13g0005030' => 'sci', 'Sc19g0003790' => 'sci', 'Sc19g0003800' => 'sci', 'Sed0003467' => 'sed', 'Sed0009355' => 'sed', 'Sed0009894' => 'sed', 'Sed0011972' => 'sed', 'Sed0021483' => 'sed', 'Sed0021750' => 'sed', 'Sed0026279' => 'sed', 'SEGI_05312' => 'sgi', 'SEGI_10112' => 'sgi', 'SEGI_15835' => 'sgi', 'SEGI_30386' => 'sgi', 'SEGI_34122' => 'sgi', 'SEGI_35063' => 'sgi', 'SGA_v2.0_scaffold101G29794' => 'sas', 'SGA_v2.0_scaffold1G00573' => 'sas', 'SGA_v2.0_scaffold79G25637' => 'sas', 'SGA_v2.0_scaffold88G27283' => 'sas', 'SGA_v2.0_scaffold88G27285' => 'sas', 'SGA_v2.0_scaffold88G27331' => 'sas', 'SHI09937' => 'shi', 'SMO119G0302' => 'smo', 'SMO137G0231' => 'smo', 'SMO367G1151' => 'smo', 'Solyc02g082000.3' => 'sly', 'Solyc06g031670.3' => 'sly', 'Solyc06g053810.3' => 'sly', 'Solyc07g025457.1' => 'sly', 'Solyc08g059740.1' => 'sly', 'Solyc08g059750.3' => 'sly', 'Solyc09g083370.3' => 'sly', 'Solyc12g038950.3' => 'sly', 'Sopen02g026630' => 'spe', 'Sopen06g018930' => 'spe', 'Sopen06g018940' => 'spe', 'Sopen08g009460' => 'spe', 'Sopen09g032290' => 'spe', 'Sp1g03080' => 'spa', 'Sp1g03090' => 'spa', 'Sp1g05480' => 'spa', 'Sp2g07860' => 'spa', 'Sp2g08430' => 'spa', 'Sp2g08440' => 'spa', 'Sp2g26200' => 'spa', 'Sp4g13170' => 'spa', 'Sp6g33840' => 'spa', 'SpUn1204_0010' => 'spa', 'TAR365G0908' => 'tar', 'TAR381G1270' => 'tar', 'TAR381G1651' => 'tar', 'TAR625G1131' => 'tar', 'TAR633G0962' => 'tar', 'TAR633G1729' => 'tar', 'TAR633G1864' => 'tar', 'TAR636G0221' => 'tar', 'TAR636G0314' => 'tar', 'TAR636G3202' => 'tar', 'THA.LOC104800805' => 'tha', 'THA.LOC104801096' => 'tha', 'THA.LOC104801555' => 'tha', 'THA.LOC104808491' => 'tha', 'THA.LOC104808595' => 'tha', 'THA.LOC104815985' => 'tha', 'THA.LOC104822250' => 'tha', 'THA.LOC104826071' => 'tha', 'Thecc.01G265200' => 'tca', 'Thecc.01G265300' => 'tca', 'Thecc.01G265700' => 'tca', 'Thecc.03G109100' => 'tca', 'Thecc.04G245900' => 'tca', 'Thecc.04G246000' => 'tca', 'Thhalv10003334m.g' => 'esa', 'Thhalv10005508m.g' => 'esa', 'Thhalv10005643m.g' => 'esa', 'Thhalv10007316m.g' => 'esa', 'Thhalv10009006m.g' => 'esa', 'Thhalv10009309m.g' => 'esa', 'Thhalv10014917m.g' => 'esa', 'Thhalv10014919m.g' => 'esa', 'Thhalv10015393m.g' => 'esa', 'Thhalv10016515m.g' => 'esa', 'Thhalv10029242m.g' => 'esa', 'TPR.G16654' => 'tpr', 'TPR.G20589' => 'tpr', 'TPR.G23029' => 'tpr', 'TPR.G27731' => 'tpr', 'TPR.G28889' => 'tpr', 'TPR.G28899' => 'tpr', 'TPR.G30846' => 'tpr', 'TPR.G5452' => 'tpr', 'TPR.G5713' => 'tpr', 'TPR.G9046' => 'tpr', 'TPR.G9061' => 'tpr', 'TWI09G1075' => 'twi', 'TWI12G0806' => 'twi', 'TWI18G0108' => 'twi', 'TWI53G1361' => 'twi', 'TWI73G0185' => 'twi', 'TWI73G0427' => 'twi', 'unitig_37.g12001' => 'ugi', 'unitig_747.g21660' => 'ugi', 'unitig_748.g7232' => 'ugi', 'unitig_748.g7315' => 'ugi', 'unitig_85.g27262' => 'ugi', 'unitig_92.g28220' => 'ugi', 'vmacro02632' => 'vma', 'vmacro08410' => 'vma', 'vmacro08411' => 'vma', 'vmacro15407' => 'vma', 'VMungo0251G3619' => 'vmu', 'VMungo0720G1204' => 'vmu', 'VMungo0720G1918' => 'vmu', 'VMungo0720G2387' => 'vmu', 'VMungo0720G2961' => 'vmu', 'VMungo1215G2154' => 'vmu', 'VMungo1383G2411' => 'vmu', 'Zm00001eb051130' => 'zma', 'Zm00001eb116830' => 'zma', 'Zm00001eb116850' => 'zma', 'Zm00001eb151740' => 'zma', 'Zm00001eb292360' => 'zma', 'Zm00001eb301640' => 'zma' ) $gf_id = 'HOM05D000856' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000856' ) $data_identifier = 'HOM05D000856' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 13, 'ath' => (int) 10, 'atr' => (int) 1, 'acertr' => (int) 8, 'cqu' => (int) 6, 'bca' => (int) 21, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 11, 'car' => (int) 9, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 8, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 5, 'fan' => (int) 16, 'fve' => (int) 6, 'gma' => (int) 11, 'ghi' => (int) 19, 'gra' => (int) 9, 'vvi' => (int) 7, 'han' => (int) 17, 'cav' => (int) 5, 'hma' => (int) 2, 'vpl' => (int) 2, 'sun' => (int) 7, 'lal' => (int) 9, 'lja' => (int) 5, 'lonja' => (int) 9, 'lsa' => (int) 5, 'mes' => (int) 8, 'mpo' => (int) 3, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 10, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 15, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 9, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 9, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 6, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 5, 'spa' => (int) 10, 'tar' => (int) 10, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 11, 'tpr' => (int) 11, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 4, 'vmu' => (int) 7, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb301640' $species_info = array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ) $local_species = 'ath' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000856', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p00010' => 'bna', 'A03p04160' => 'bna', 'A03p17160' => 'bna', 'A04p23370' => 'bna', 'A05p14860' => 'bna', 'A08p37020' => 'bna', 'A09p08050' => 'bna', 'A09p66800' => 'bna', 'A09p67940' => 'bna', 'A10p02680' => 'bna', 'A10p05320' => 'bna', 'Aa31LG1G20560' => 'aar', 'Aa31LG1G20610' => 'aar', 'Aa31LG1G7810' => 'aar', 'Aa31LG5G3590' => 'aar', 'Aa31LG5G6140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3819' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4683' => 'aag', 'Actinidia04480' => 'ach', 'Actinidia05466' => 'ach', 'Actinidia08445' => 'ach', 'Actinidia21170' => 'ach', 'Actinidia24812' => 'ach', 'Actinidia24951' => 'ach', 'Actinidia40088' => 'ach', 'Ah.02g111660' => 'amhyb', 'Ah.11g048900' => 'amhyb', 'Ah.11g049910' => 'amhyb', 'AL1G13870' => 'aly', 'AL1G13880' => 'aly', 'AL1G16760' => 'aly', 'AL390U10020' => 'aly', 'AL4G25520' => 'aly', 'AL6G19890' => 'aly', 'AL6G19900' => 'aly', 'AL6G19910' => 'aly', 'AL8G40100' => 'aly', 'Aqoxy2G03562' => 'aox', 'Aqoxy5G00316' => 'aox', 'Aqoxy5G00926' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1628KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1H403S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2FU6SJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.882I6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8YRY2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YN1SN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AF70II' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZA8L1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F916KL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHRD8H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KTZ8QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S22EMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8M29T' => 'arhy', 'AT1G04270' => 'ath', 'AT1G04280' => 'ath', 'AT1G06750' => 'ath', 'AT1G33850' => 'ath', 'AT2G30630' => 'ath', 'AT5G09490' => 'ath', 'AT5G09500' => 'ath', 'AT5G09510' => 'ath', 'AT5G43640' => 'ath', 'AT5G63070' => 'ath', 'ATR0605G315' => 'atr', 'Atru.chr11.175' => 'acertr', 'Atru.chr11.653' => 'acertr', 'Atru.chr3.1616' => 'acertr', 'Atru.chr4.2230' => 'acertr', 'Atru.chr4.2232' => 'acertr', 'Atru.chr5.1598' => 'acertr', 'Atru.chr5.1600' => 'acertr', 'Atru.chr5.2188' => 'acertr', 'AUR62008326' => 'cqu', 'AUR62011922' => 'cqu', 'AUR62011924' => 'cqu', 'AUR62021771' => 'cqu', 'AUR62032237' => 'cqu', 'AUR62032240' => 'cqu', 'BcaB01g05572' => 'bca', 'BcaB02g10337' => 'bca', 'BcaB04g19944' => 'bca', 'BcaB05g21548' => 'bca', 'BcaB05g21549' => 'bca', 'BcaB05g23227' => 'bca', 'BcaB06g26256' => 'bca', 'BcaB06g26257' => 'bca', 'BcaB06g28379' => 'bca', 'BcaC02g11159' => 'bca', 'BcaC03g13258' => 'bca', 'BcaC03g13259' => 'bca', 'BcaC05g24456' => 'bca', 'BcaC05g24457' => 'bca', 'BcaC07g36922' => 'bca', 'BcaC07g36923' => 'bca', 'BcaC07g42050' => 'bca', 'BcaC07g42176' => 'bca', 'BcaC07g42195' => 'bca', 'BcaC07g42196' => 'bca', 'BcaNung06674' => 'bca', 'BolC2t06351H' => 'bol', 'BolC2t06352H' => 'bol', 'BolC3t12993H' => 'bol', 'BolC4t23525H' => 'bol', 'BolC4t27475H' => 'bol', 'BolC5t29025H' => 'bol', 'BolC5t29026H' => 'bol', 'BolC8t46898H' => 'bol', 'BolC8t46899H' => 'bol', 'BolC8t52630H' => 'bol', 'BolC8t52765H' => 'bol', 'BolC9t53824H' => 'bol', 'BraA03t09760Z' => 'bra', 'BraA03t10990Z' => 'bra', 'BraA05t20413Z' => 'bra', 'BraA08t35602Z' => 'bra', 'BraA09t36458Z' => 'bra', 'BraA09t42018Z' => 'bra', 'BraA09t42129Z' => 'bra', 'BraA10t42536Z' => 'bra', 'BraA10t42537Z' => 'bra', 'C01p10690' => 'bna', 'C02p03890' => 'bna', 'C02p03900' => 'bna', 'C03p04620' => 'bna', 'C04p19870' => 'bna', 'C04p59670' => 'bna', 'C05p02460' => 'bna', 'C05p02470' => 'bna', 'C08p00980' => 'bna', 'C08p00990' => 'bna', 'C08p51030' => 'bna', 'C08p52360' => 'bna', 'C09p09120' => 'bna', 'CAN.G19.15' => 'can', 'CAN.G251.10' => 'can', 'CAN.G251.9' => 'can', 'CAN.G398.24' => 'can', 'CAN.G410.32' => 'can', 'CAN.G881.2' => 'can', 'CANSAT01G3025' => 'cansat', 'CANSAT78G1211' => 'cansat', 'CANSAT78G1218' => 'cansat', 'CANSAT78G1521' => 'cansat', 'CANSAT78G1670' => 'cansat', 'CARHR003600' => 'chi', 'CARHR003610' => 'chi', 'CARHR006290' => 'chi', 'CARHR006430' => 'chi', 'CARHR124110' => 'chi', 'CARHR203870' => 'chi', 'CARHR203880' => 'chi', 'CARHR203890' => 'chi', 'CARHR276880' => 'chi', 'Carub.0001s0346' => 'cru', 'Carub.0001s0347' => 'cru', 'Carub.0001s0607' => 'cru', 'Carub.0003s2768' => 'cru', 'Carub.0003s2769' => 'cru', 'Carub.0004s1178' => 'cru', 'Carub.0006s0806' => 'cru', 'Carub.0006s0807' => 'cru', 'Carub.0006s0808' => 'cru', 'Carub.0008s0501' => 'cru', 'Carub.0008s2379' => 'cru', 'Ca_08655_v3' => 'car', 'Ca_08922_v3' => 'car', 'Ca_08923_v3' => 'car', 'Ca_09119_v3' => 'car', 'Ca_09703_v3' => 'car', 'Ca_09705_v3' => 'car', 'Ca_09835_v3' => 'car', 'Ca_26403_v3' => 'car', 'Ca_30719_v3' => 'car', 'CBR_g17958' => 'cbr', 'CBR_g40516' => 'cbr', 'Cc00_g05350' => 'ccan', 'Cc01_g18690' => 'ccan', 'Cc03_g04830' => 'ccan', 'Cc03_g04850' => 'ccan', 'CDE02G4469' => 'cde', 'CDE06G0883' => 'cde', 'CDE06G1295' => 'cde', 'CDE06G1390' => 'cde', 'CDE07G0584' => 'cde', 'CDE07G1084' => 'cde', 'CDE08G1259' => 'cde', 'Cfa002341' => 'cfa', 'Cfa024337' => 'cfa', 'Ciclev10004749m.g' => 'ccl', 'Ciclev10006127m.g' => 'ccl', 'Ciclev10019720m.g' => 'ccl', 'Ciclev10022652m.g' => 'ccl', 'CiPaw.01G190400' => 'cil', 'CiPaw.01G190500' => 'cil', 'CiPaw.02G116400' => 'cil', 'CiPaw.02G116500' => 'cil', 'CiPaw.04G183000' => 'cil', 'CiPaw.04G183300' => 'cil', 'ClCG05G004610' => 'cla', 'ClCG05G004620' => 'cla', 'ClCG06G006730' => 'cla', 'ClCG06G006740' => 'cla', 'ClCG11G003690' => 'cla', 'COL.COLO4_08276' => 'col', 'COL.COLO4_08277' => 'col', 'COL.COLO4_15787' => 'col', 'COL.COLO4_15789' => 'col', 'Cpa.g.c44815' => 'cpa', 'Cpa.g.sc52.144' => 'cpa', 'Cpa.g.sc58.46' => 'cpa', 'Cpa.g.sc58.47' => 'cpa', 'Cre08.g360900' => 'cre', 'CsaV3_2G013030' => 'csa', 'CsaV3_2G013050' => 'csa', 'CsaV3_2G015620' => 'csa', 'CsaV3_3G012590' => 'csa', 'CsaV3_3G012600' => 'csa', 'CSS0001641' => 'camsi', 'CSS0008310' => 'camsi', 'CSS0013011' => 'camsi', 'CSS0017147' => 'camsi', 'CSS0022970' => 'camsi', 'CSS0025655' => 'camsi', 'CSS0028665' => 'camsi', 'CSS0029117' => 'camsi', 'CSS0032024' => 'camsi', 'CSS0039681' => 'camsi', 'CSS0046516' => 'camsi', 'CSS0050307' => 'camsi', 'DCAR_005871' => 'dca', 'DCAR_007342' => 'dca', 'DCAR_024228' => 'dca', 'DCAR_027277' => 'dca', 'DCAR_030718' => 'dca', 'Dinv20287' => 'din', 'Dinv22461' => 'din', 'Dinv22464' => 'din', 'Dinv29912' => 'din', 'Dinv29913' => 'din', 'Dinv34580' => 'din', 'Dinv34582' => 'din', 'Dinv44632' => 'din', 'Duzib052G0266' => 'dzi', 'Duzib133G0907' => 'dzi', 'Duzib133G1034' => 'dzi', 'Duzib138G0207' => 'dzi', 'Duzib138G0491' => 'dzi', 'Duzib151G0812' => 'dzi', 'Duzib151G1166' => 'dzi', 'Duzib168G0192' => 'dzi', 'Duzib211G0077' => 'dzi', 'Duzib212G0429' => 'dzi', 'Duzib212G0472' => 'dzi', 'ECA233G2617' => 'eca', 'ECA236G4188' => 'eca', 'ECA240G0936' => 'eca', 'ECA240G1129' => 'eca', 'ECA247G0623' => 'eca', 'EL10Ac5g10451' => 'bvu', 'EL10Ac5g10453' => 'bvu', 'EL10Ac5g10894' => 'bvu', 'Eucgr.H00192' => 'egr', 'Eucgr.H00193' => 'egr', 'Eucgr.H00194' => 'egr', 'Eucgr.J01562' => 'egr', 'Eucgr.K03301' => 'egr', 'FAN02G0632' => 'fan', 'FAN05G5378' => 'fan', 'FAN09G3247' => 'fan', 'FAN12G0435' => 'fan', 'FAN12G2426' => 'fan', 'FAN14G1707' => 'fan', 'FAN14G4725' => 'fan', 'FAN15G2071' => 'fan', 'FAN17G3065' => 'fan', 'FAN19G1376' => 'fan', 'FAN20G0354' => 'fan', 'FAN20G2429' => 'fan', 'FAN20G2658' => 'fan', 'FAN24G2343' => 'fan', 'FAN27G2362' => 'fan', 'FAN28G1765' => 'fan', 'FvH4_1g16020' => 'fve', 'FvH4_2g04890' => 'fve', 'FvH4_2g22270' => 'fve', 'FvH4_4g02630' => 'fve', 'FvH4_4g02640' => 'fve', 'FvH4_6g02650' => 'fve', 'Glyma.02G140600' => 'gma', 'Glyma.03G159900' => 'gma', 'Glyma.05G234800' => 'gma', 'Glyma.07G269600' => 'gma', 'Glyma.08G042300' => 'gma', 'Glyma.10G033500' => 'gma', 'Glyma.10G185200' => 'gma', 'Glyma.17G004300' => 'gma', 'Glyma.19G161900' => 'gma', 'Glyma.20G205100' => 'gma', 'Glyma.20G205200' => 'gma', 'Gohir.A01G139101' => 'ghi', 'Gohir.A02G035600' => 'ghi', 'Gohir.A02G117901' => 'ghi', 'Gohir.A07G210100' => 'ghi', 'Gohir.A07G210200' => 'ghi', 'Gohir.A08G061100' => 'ghi', 'Gohir.A09G223000' => 'ghi', 'Gohir.A09G223100' => 'ghi', 'Gohir.A10G113900' => 'ghi', 'Gohir.A10G114000' => 'ghi', 'Gohir.D02G042300' => 'ghi', 'Gohir.D07G216100' => 'ghi', 'Gohir.D07G216200' => 'ghi', 'Gohir.D08G070400' => 'ghi', 'Gohir.D09G225000' => 'ghi', 'Gohir.D09G225100' => 'ghi', 'Gohir.D10G152300' => 'ghi', 'Gohir.D10G153200' => 'ghi', 'Gohir.D11G133701' => 'ghi', 'Gorai.004G074100' => 'gra', 'Gorai.005G046800' => 'gra', 'Gorai.006G246500' => 'gra', 'Gorai.006G246600' => 'gra', 'Gorai.007G142900' => 'gra', 'Gorai.011G171000' => 'gra', 'Gorai.011G171100' => 'gra', 'Gorai.013G104300' => 'gra', 'Gorai.013G104400' => 'gra', 'GSVIVG01000754001' => 'vvi', 'GSVIVG01000756001' => 'vvi', 'GSVIVG01010903001' => 'vvi', 'GSVIVG01017623001' => 'vvi', 'GSVIVG01018113001' => 'vvi', 'GSVIVG01018116001' => 'vvi', 'GSVIVG01018118001' => 'vvi', 'HanXRQChr03g0076211' => 'han', 'HanXRQChr03g0092431' => 'han', 'HanXRQChr03g0092441' => 'han', 'HanXRQChr03g0092591' => 'han', 'HanXRQChr03g0092671' => 'han', 'HanXRQChr03g0092681' => 'han', 'HanXRQChr03g0092691' => 'han', 'HanXRQChr03g0092701' => 'han', 'HanXRQChr03g0092721' => 'han', 'HanXRQChr03g0092731' => 'han', 'HanXRQChr04g0113681' => 'han', 'HanXRQChr10g0281371' => 'han', 'HanXRQChr11g0337141' => 'han', 'HanXRQChr13g0424521' => 'han', 'HanXRQChr13g0424531' => 'han', 'HanXRQChr13g0424541' => 'han', 'HanXRQChr16g0498221' => 'han', 'Haze_04377' => 'cav', 'Haze_11298' => 'cav', 'Haze_24547' => 'cav', 'Haze_24550' => 'cav', 'Haze_26587' => 'cav', 'Hma1.2p1_0650F.1_g195410' => 'hma', 'Hma1.2p1_0893F.1_g233470' => 'hma', 'HPP92_006508' => 'vpl', 'HPP92_024780' => 'vpl', 'Hund02688' => 'sun', 'Hund09380' => 'sun', 'Hund09381' => 'sun', 'Hund09832' => 'sun', 'Hund09833' => 'sun', 'Hund11351' => 'sun', 'Hund11513' => 'sun', 'Lalb_Chr06g0162591' => 'lal', 'Lalb_Chr06g0162601' => 'lal', 'Lalb_Chr06g0169321' => 'lal', 'Lalb_Chr09g0330951' => 'lal', 'Lalb_Chr16g0387631' => 'lal', 'Lalb_Chr21g0306241' => 'lal', 'Lalb_Chr25g0290051' => 'lal', 'Lalb_Chr25g0290061' => 'lal', 'Lalb_Chr25g0290071' => 'lal', 'Lj1g0003876' => 'lja', 'Lj1P1207T36' => 'lonja', 'Lj2C1156G12' => 'lonja', 'Lj3A793G39' => 'lonja', 'Lj3C580G2' => 'lonja', 'Lj3C780G2' => 'lonja', 'Lj3C780T4' => 'lonja', 'Lj3C793G9' => 'lonja', 'Lj4g0012960' => 'lja', 'Lj5g0021252' => 'lja', 'Lj5g0021484' => 'lja', 'Lj5g0024528' => 'lja', 'Lj6A399T12' => 'lonja', 'Lj6A656G65' => 'lonja', 'Lsat_1_v5_gn_3_125500' => 'lsa', 'Lsat_1_v5_gn_3_125540' => 'lsa', 'Lsat_1_v5_gn_5_72701' => 'lsa', 'Lsat_1_v5_gn_8_91560' => 'lsa', 'Lsat_1_v5_gn_9_9640' => 'lsa', 'Manes.01G200600' => 'mes', 'Manes.01G200700' => 'mes', 'Manes.03G168900' => 'mes', 'Manes.03G169000' => 'mes', 'Manes.05G085801' => 'mes', 'Manes.05G086200' => 'mes', 'Manes.15G036700' => 'mes', 'Manes.15G036900' => 'mes', 'Mapoly0004s0172' => 'mpo', 'Mapoly0023s0001' => 'mpo', 'Mapoly0142s0012' => 'mpo', 'MBI01_g32854_MAGBIO' => 'mbi', 'MBI11_g24427_MAGBIO' => 'mbi', 'MBI11_g47319_MAGBIO' => 'mbi', 'MCO01G433' => 'mco', 'MD00G1187800' => 'mdo', 'MD04G1226500' => 'mdo', 'MD05G1203900' => 'mdo', 'MD10G1191100' => 'mdo', 'MD12G1243500' => 'mdo', 'MD13G1207000' => 'mdo', 'MD13G1207100' => 'mdo', 'MD16G1208600' => 'mdo', 'Medtr1g050352' => 'mtr', 'Medtr1g070385' => 'mtr', 'Medtr1g070450' => 'mtr', 'Medtr1g075200' => 'mtr', 'Medtr1g075250' => 'mtr', 'Medtr1g075260' => 'mtr', 'Medtr1g475250' => 'mtr', 'Medtr4g075450' => 'mtr', 'Medtr7g096300' => 'mtr', 'Medtr8g105110' => 'mtr', 'MELO3C006470.2' => 'cme', 'MELO3C006471.2' => 'cme', 'MELO3C020772.2' => 'cme', 'MELO3C026780.2' => 'cme', 'MELO3C026781.2' => 'cme', 'Migut.D00390' => 'egut', 'Migut.G00435' => 'egut', 'Migut.G00436' => 'egut', 'Migut.G00718' => 'egut', 'MSTRG.21891' => 'ama', 'MSTRG.26910' => 'ama', 'MSTRG.4099' => 'ama', 'MSTRG.9925' => 'ama', 'Nitab4.5_0000165g0010' => 'nta', 'Nitab4.5_0000209g0180' => 'nta', 'Nitab4.5_0000244g0440' => 'nta', 'Nitab4.5_0000525g0220' => 'nta', 'Nitab4.5_0001597g0020' => 'nta', 'Nitab4.5_0001878g0040' => 'nta', 'Nitab4.5_0001878g0060' => 'nta', 'Nitab4.5_0002838g0100' => 'nta', 'Nitab4.5_0002838g0120' => 'nta', 'Nitab4.5_0004798g0030' => 'nta', 'Nitab4.5_0005420g0010' => 'nta', 'Nitab4.5_0005507g0010' => 'nta', 'Nitab4.5_0005574g0020' => 'nta', 'Nitab4.5_0005838g0010' => 'nta', 'Nitab4.5_0010580g0020' => 'nta', 'Nn1g02599' => 'nnu', 'Nn1g02608' => 'nnu', 'Nn3g17742' => 'nnu', 'Nn3g19534' => 'nnu', 'Nn3g19535' => 'nnu', 'Oeu008790.1' => 'oeu', 'Oeu008792.1' => 'oeu', 'Oeu032590.1' => 'oeu', 'Oeu035349.1' => 'oeu', 'Oeu049791.1' => 'oeu', 'Os01g0774500' => 'osa', 'Os03g0628800' => 'osa', 'Os03g0798600' => 'osa', 'Os05g0508800' => 'osa', 'Peaxi162Scf00036g02018' => 'pax', 'Peaxi162Scf00578g00032' => 'pax', 'Peaxi162Scf00578g00317' => 'pax', 'Peaxi162Scf00785g00114' => 'pax', 'Peaxi162Scf00813g00119' => 'pax', 'Peaxi162Scf00906g00227' => 'pax', 'PGR004G0875' => 'pgr', 'PGR004G2424' => 'pgr', 'PGR031G1239' => 'pgr', 'PGR031G2474' => 'pgr', 'PGR044G0423' => 'pgr', 'PGSC0003DMG400001128' => 'stu', 'PGSC0003DMG400007336' => 'stu', 'PGSC0003DMG400016318' => 'stu', 'PGSC0003DMG400016319' => 'stu', 'PGSC0003DMG400018074' => 'stu', 'Phvul.001G157700' => 'pvu', 'Phvul.002G148550' => 'pvu', 'Phvul.002G320200' => 'pvu', 'Phvul.003G089200' => 'pvu', 'Phvul.007G126000' => 'pvu', 'Phvul.007G126100' => 'pvu', 'Phvul.007G178000' => 'pvu', 'Phvul.007G178200' => 'pvu', 'Potri.002G043000' => 'ptr', 'Potri.002G043200' => 'ptr', 'Potri.003G123750' => 'ptr', 'Potri.005G055401' => 'ptr', 'Potri.005G219700' => 'ptr', 'Potri.005G220000' => 'ptr', 'Potri.008G161901' => 'ptr', 'Potri.008G162000' => 'ptr', 'Potri.008G162400' => 'ptr', 'Potri.010G076900' => 'ptr', 'Pp3c12_9180' => 'ppa', 'Pp3c13_19770' => 'ppa', 'Pp3c14_22950' => 'ppa', 'Pp3c16_12160' => 'ppa', 'Pp3c27_7820' => 'ppa', 'Pp3c2_3490' => 'ppa', 'Pp3c3_23700' => 'ppa', 'Pp3c3_36520' => 'ppa', 'Pp3c4_15250' => 'ppa', 'PRCOL_00007002' => 'pco', 'Prupe.1G030600' => 'ppe', 'Prupe.1G030700' => 'ppe', 'Prupe.6G345200' => 'ppe', 'Prupe.8G230300' => 'ppe', 'Prupe.8G230500' => 'ppe', 'Psat3g059600' => 'psa', 'Psat5g200920' => 'psa', 'Psat6g056440' => 'psa', 'Psat6g057360' => 'psa', 'Psat6g134120' => 'psa', 'Psat6g134160' => 'psa', 'Psat7g008640' => 'psa', 'Psat7g185240' => 'psa', 'PSO017G1330' => 'pso', 'PSO063G6097' => 'pso', 'PSO170G0835' => 'pso', 'PSO170G2499' => 'pso', 'PSO210G5058' => 'pso', 'PSO210G6154' => 'pso', 'PSO585G0031' => 'pso', 'PSO832G0264' => 'pso', 'PSO832G4288' => 'pso', 'QL03p027355' => 'qlo', 'QL03p027430' => 'qlo', 'QL04p081380' => 'qlo', 'QL06p015642' => 'qlo', 'QL06p015650' => 'qlo', 'QL06p015686' => 'qlo', 'QL12p042927' => 'qlo', 'QL93p1863_0035' => 'qlo', 'RcHm_v2.0_Chr3g0450581' => 'rch', 'RcHm_v2.0_Chr4g0390371' => 'rch', 'RcHm_v2.0_Chr4g0390381' => 'rch', 'RcHm_v2.0_Chr4g0390491' => 'rch', 'RcHm_v2.0_Chr4g0390501' => 'rch', 'RcHm_v2.0_Chr6g0289231' => 'rch', 'Rhsim04G0190400' => 'rsi', 'Rhsim04G0190500' => 'rsi', 'Rhsim04G0190600' => 'rsi', 'Rhsim13G0031400' => 'rsi', 'Rhsim13G0165600' => 'rsi', 'RhsimUnG0114600' => 'rsi', 'RhsimUnG0114700' => 'rsi', 'Sabra02G0034800' => 'sbr', 'Sabra02G0035100' => 'sbr', 'Sabra05G0168600' => 'sbr', 'Sabra05G0168800' => 'sbr', 'Sabra08G0123700' => 'sbr', 'Sabra10G0031900' => 'sbr', 'Sabra13G0039000' => 'sbr', 'SalBow2G0782' => 'sbo', 'SalBow2G1403' => 'sbo', 'SalBow4G0074' => 'sbo', 'SalBow4G2635' => 'sbo', 'SalBow5G3010' => 'sbo', 'Sc05g0000870' => 'sci', 'Sc05g0000890' => 'sci', 'Sc13g0005000' => 'sci', 'Sc13g0005030' => 'sci', 'Sc19g0003790' => 'sci', 'Sc19g0003800' => 'sci', 'Sed0003467' => 'sed', 'Sed0009355' => 'sed', 'Sed0009894' => 'sed', 'Sed0011972' => 'sed', 'Sed0021483' => 'sed', 'Sed0021750' => 'sed', 'Sed0026279' => 'sed', 'SEGI_05312' => 'sgi', 'SEGI_10112' => 'sgi', 'SEGI_15835' => 'sgi', 'SEGI_30386' => 'sgi', 'SEGI_34122' => 'sgi', 'SEGI_35063' => 'sgi', 'SGA_v2.0_scaffold101G29794' => 'sas', 'SGA_v2.0_scaffold1G00573' => 'sas', 'SGA_v2.0_scaffold79G25637' => 'sas', 'SGA_v2.0_scaffold88G27283' => 'sas', 'SGA_v2.0_scaffold88G27285' => 'sas', 'SGA_v2.0_scaffold88G27331' => 'sas', 'SHI09937' => 'shi', 'SMO119G0302' => 'smo', 'SMO137G0231' => 'smo', 'SMO367G1151' => 'smo', 'Solyc02g082000.3' => 'sly', 'Solyc06g031670.3' => 'sly', 'Solyc06g053810.3' => 'sly', 'Solyc07g025457.1' => 'sly', 'Solyc08g059740.1' => 'sly', 'Solyc08g059750.3' => 'sly', 'Solyc09g083370.3' => 'sly', 'Solyc12g038950.3' => 'sly', 'Sopen02g026630' => 'spe', 'Sopen06g018930' => 'spe', 'Sopen06g018940' => 'spe', 'Sopen08g009460' => 'spe', 'Sopen09g032290' => 'spe', 'Sp1g03080' => 'spa', 'Sp1g03090' => 'spa', 'Sp1g05480' => 'spa', 'Sp2g07860' => 'spa', 'Sp2g08430' => 'spa', 'Sp2g08440' => 'spa', 'Sp2g26200' => 'spa', 'Sp4g13170' => 'spa', 'Sp6g33840' => 'spa', 'SpUn1204_0010' => 'spa', 'TAR365G0908' => 'tar', 'TAR381G1270' => 'tar', 'TAR381G1651' => 'tar', 'TAR625G1131' => 'tar', 'TAR633G0962' => 'tar', 'TAR633G1729' => 'tar', 'TAR633G1864' => 'tar', 'TAR636G0221' => 'tar', 'TAR636G0314' => 'tar', 'TAR636G3202' => 'tar', 'THA.LOC104800805' => 'tha', 'THA.LOC104801096' => 'tha', 'THA.LOC104801555' => 'tha', 'THA.LOC104808491' => 'tha', 'THA.LOC104808595' => 'tha', 'THA.LOC104815985' => 'tha', 'THA.LOC104822250' => 'tha', 'THA.LOC104826071' => 'tha', 'Thecc.01G265200' => 'tca', 'Thecc.01G265300' => 'tca', 'Thecc.01G265700' => 'tca', 'Thecc.03G109100' => 'tca', 'Thecc.04G245900' => 'tca', 'Thecc.04G246000' => 'tca', 'Thhalv10003334m.g' => 'esa', 'Thhalv10005508m.g' => 'esa', 'Thhalv10005643m.g' => 'esa', 'Thhalv10007316m.g' => 'esa', 'Thhalv10009006m.g' => 'esa', 'Thhalv10009309m.g' => 'esa', 'Thhalv10014917m.g' => 'esa', 'Thhalv10014919m.g' => 'esa', 'Thhalv10015393m.g' => 'esa', 'Thhalv10016515m.g' => 'esa', 'Thhalv10029242m.g' => 'esa', 'TPR.G16654' => 'tpr', 'TPR.G20589' => 'tpr', 'TPR.G23029' => 'tpr', 'TPR.G27731' => 'tpr', 'TPR.G28889' => 'tpr', 'TPR.G28899' => 'tpr', 'TPR.G30846' => 'tpr', 'TPR.G5452' => 'tpr', 'TPR.G5713' => 'tpr', 'TPR.G9046' => 'tpr', 'TPR.G9061' => 'tpr', 'TWI09G1075' => 'twi', 'TWI12G0806' => 'twi', 'TWI18G0108' => 'twi', 'TWI53G1361' => 'twi', 'TWI73G0185' => 'twi', 'TWI73G0427' => 'twi', 'unitig_37.g12001' => 'ugi', 'unitig_747.g21660' => 'ugi', 'unitig_748.g7232' => 'ugi', 'unitig_748.g7315' => 'ugi', 'unitig_85.g27262' => 'ugi', 'unitig_92.g28220' => 'ugi', 'vmacro02632' => 'vma', 'vmacro08410' => 'vma', 'vmacro08411' => 'vma', 'vmacro15407' => 'vma', 'VMungo0251G3619' => 'vmu', 'VMungo0720G1204' => 'vmu', 'VMungo0720G1918' => 'vmu', 'VMungo0720G2387' => 'vmu', 'VMungo0720G2961' => 'vmu', 'VMungo1215G2154' => 'vmu', 'VMungo1383G2411' => 'vmu', 'Zm00001eb051130' => 'zma', 'Zm00001eb116830' => 'zma', 'Zm00001eb116850' => 'zma', 'Zm00001eb151740' => 'zma', 'Zm00001eb292360' => 'zma', 'Zm00001eb301640' => 'zma' ), 'gf_id' => 'HOM05D000856', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000856' ), 'data_identifier' => 'HOM05D000856', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000856', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p00010' => 'bna', 'A03p04160' => 'bna', 'A03p17160' => 'bna', 'A04p23370' => 'bna', 'A05p14860' => 'bna', 'A08p37020' => 'bna', 'A09p08050' => 'bna', 'A09p66800' => 'bna', 'A09p67940' => 'bna', 'A10p02680' => 'bna', 'A10p05320' => 'bna', 'Aa31LG1G20560' => 'aar', 'Aa31LG1G20610' => 'aar', 'Aa31LG1G7810' => 'aar', 'Aa31LG5G3590' => 'aar', 'Aa31LG5G6140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3819' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4683' => 'aag', 'Actinidia04480' => 'ach', 'Actinidia05466' => 'ach', 'Actinidia08445' => 'ach', 'Actinidia21170' => 'ach', 'Actinidia24812' => 'ach', 'Actinidia24951' => 'ach', 'Actinidia40088' => 'ach', 'Ah.02g111660' => 'amhyb', 'Ah.11g048900' => 'amhyb', 'Ah.11g049910' => 'amhyb', 'AL1G13870' => 'aly', 'AL1G13880' => 'aly', 'AL1G16760' => 'aly', 'AL390U10020' => 'aly', 'AL4G25520' => 'aly', 'AL6G19890' => 'aly', 'AL6G19900' => 'aly', 'AL6G19910' => 'aly', 'AL8G40100' => 'aly', 'Aqoxy2G03562' => 'aox', 'Aqoxy5G00316' => 'aox', 'Aqoxy5G00926' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1628KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1H403S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2FU6SJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.882I6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8YRY2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YN1SN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AF70II' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZA8L1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F916KL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHRD8H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KTZ8QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S22EMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8M29T' => 'arhy', 'AT1G04270' => 'ath', 'AT1G04280' => 'ath', 'AT1G06750' => 'ath', 'AT1G33850' => 'ath', 'AT2G30630' => 'ath', 'AT5G09490' => 'ath', 'AT5G09500' => 'ath', 'AT5G09510' => 'ath', 'AT5G43640' => 'ath', 'AT5G63070' => 'ath', 'ATR0605G315' => 'atr', 'Atru.chr11.175' => 'acertr', 'Atru.chr11.653' => 'acertr', 'Atru.chr3.1616' => 'acertr', 'Atru.chr4.2230' => 'acertr', 'Atru.chr4.2232' => 'acertr', 'Atru.chr5.1598' => 'acertr', 'Atru.chr5.1600' => 'acertr', 'Atru.chr5.2188' => 'acertr', 'AUR62008326' => 'cqu', 'AUR62011922' => 'cqu', 'AUR62011924' => 'cqu', 'AUR62021771' => 'cqu', 'AUR62032237' => 'cqu', 'AUR62032240' => 'cqu', 'BcaB01g05572' => 'bca', 'BcaB02g10337' => 'bca', 'BcaB04g19944' => 'bca', 'BcaB05g21548' => 'bca', 'BcaB05g21549' => 'bca', 'BcaB05g23227' => 'bca', 'BcaB06g26256' => 'bca', 'BcaB06g26257' => 'bca', 'BcaB06g28379' => 'bca', 'BcaC02g11159' => 'bca', 'BcaC03g13258' => 'bca', 'BcaC03g13259' => 'bca', 'BcaC05g24456' => 'bca', 'BcaC05g24457' => 'bca', 'BcaC07g36922' => 'bca', 'BcaC07g36923' => 'bca', 'BcaC07g42050' => 'bca', 'BcaC07g42176' => 'bca', 'BcaC07g42195' => 'bca', 'BcaC07g42196' => 'bca', 'BcaNung06674' => 'bca', 'BolC2t06351H' => 'bol', 'BolC2t06352H' => 'bol', 'BolC3t12993H' => 'bol', 'BolC4t23525H' => 'bol', 'BolC4t27475H' => 'bol', 'BolC5t29025H' => 'bol', 'BolC5t29026H' => 'bol', 'BolC8t46898H' => 'bol', 'BolC8t46899H' => 'bol', 'BolC8t52630H' => 'bol', 'BolC8t52765H' => 'bol', 'BolC9t53824H' => 'bol', 'BraA03t09760Z' => 'bra', 'BraA03t10990Z' => 'bra', 'BraA05t20413Z' => 'bra', 'BraA08t35602Z' => 'bra', 'BraA09t36458Z' => 'bra', 'BraA09t42018Z' => 'bra', 'BraA09t42129Z' => 'bra', 'BraA10t42536Z' => 'bra', 'BraA10t42537Z' => 'bra', 'C01p10690' => 'bna', 'C02p03890' => 'bna', 'C02p03900' => 'bna', 'C03p04620' => 'bna', 'C04p19870' => 'bna', 'C04p59670' => 'bna', 'C05p02460' => 'bna', 'C05p02470' => 'bna', 'C08p00980' => 'bna', 'C08p00990' => 'bna', 'C08p51030' => 'bna', 'C08p52360' => 'bna', 'C09p09120' => 'bna', 'CAN.G19.15' => 'can', 'CAN.G251.10' => 'can', 'CAN.G251.9' => 'can', 'CAN.G398.24' => 'can', 'CAN.G410.32' => 'can', 'CAN.G881.2' => 'can', 'CANSAT01G3025' => 'cansat', 'CANSAT78G1211' => 'cansat', 'CANSAT78G1218' => 'cansat', 'CANSAT78G1521' => 'cansat', 'CANSAT78G1670' => 'cansat', 'CARHR003600' => 'chi', 'CARHR003610' => 'chi', 'CARHR006290' => 'chi', 'CARHR006430' => 'chi', 'CARHR124110' => 'chi', 'CARHR203870' => 'chi', 'CARHR203880' => 'chi', 'CARHR203890' => 'chi', 'CARHR276880' => 'chi', 'Carub.0001s0346' => 'cru', 'Carub.0001s0347' => 'cru', 'Carub.0001s0607' => 'cru', 'Carub.0003s2768' => 'cru', 'Carub.0003s2769' => 'cru', 'Carub.0004s1178' => 'cru', 'Carub.0006s0806' => 'cru', 'Carub.0006s0807' => 'cru', 'Carub.0006s0808' => 'cru', 'Carub.0008s0501' => 'cru', 'Carub.0008s2379' => 'cru', 'Ca_08655_v3' => 'car', 'Ca_08922_v3' => 'car', 'Ca_08923_v3' => 'car', 'Ca_09119_v3' => 'car', 'Ca_09703_v3' => 'car', 'Ca_09705_v3' => 'car', 'Ca_09835_v3' => 'car', 'Ca_26403_v3' => 'car', 'Ca_30719_v3' => 'car', 'CBR_g17958' => 'cbr', 'CBR_g40516' => 'cbr', 'Cc00_g05350' => 'ccan', 'Cc01_g18690' => 'ccan', 'Cc03_g04830' => 'ccan', 'Cc03_g04850' => 'ccan', 'CDE02G4469' => 'cde', 'CDE06G0883' => 'cde', 'CDE06G1295' => 'cde', 'CDE06G1390' => 'cde', 'CDE07G0584' => 'cde', 'CDE07G1084' => 'cde', 'CDE08G1259' => 'cde', 'Cfa002341' => 'cfa', 'Cfa024337' => 'cfa', 'Ciclev10004749m.g' => 'ccl', 'Ciclev10006127m.g' => 'ccl', 'Ciclev10019720m.g' => 'ccl', 'Ciclev10022652m.g' => 'ccl', 'CiPaw.01G190400' => 'cil', 'CiPaw.01G190500' => 'cil', 'CiPaw.02G116400' => 'cil', 'CiPaw.02G116500' => 'cil', 'CiPaw.04G183000' => 'cil', 'CiPaw.04G183300' => 'cil', 'ClCG05G004610' => 'cla', 'ClCG05G004620' => 'cla', 'ClCG06G006730' => 'cla', 'ClCG06G006740' => 'cla', 'ClCG11G003690' => 'cla', 'COL.COLO4_08276' => 'col', 'COL.COLO4_08277' => 'col', 'COL.COLO4_15787' => 'col', 'COL.COLO4_15789' => 'col', 'Cpa.g.c44815' => 'cpa', 'Cpa.g.sc52.144' => 'cpa', 'Cpa.g.sc58.46' => 'cpa', 'Cpa.g.sc58.47' => 'cpa', 'Cre08.g360900' => 'cre', 'CsaV3_2G013030' => 'csa', 'CsaV3_2G013050' => 'csa', 'CsaV3_2G015620' => 'csa', 'CsaV3_3G012590' => 'csa', 'CsaV3_3G012600' => 'csa', 'CSS0001641' => 'camsi', 'CSS0008310' => 'camsi', 'CSS0013011' => 'camsi', 'CSS0017147' => 'camsi', 'CSS0022970' => 'camsi', 'CSS0025655' => 'camsi', 'CSS0028665' => 'camsi', 'CSS0029117' => 'camsi', 'CSS0032024' => 'camsi', 'CSS0039681' => 'camsi', 'CSS0046516' => 'camsi', 'CSS0050307' => 'camsi', 'DCAR_005871' => 'dca', 'DCAR_007342' => 'dca', 'DCAR_024228' => 'dca', 'DCAR_027277' => 'dca', 'DCAR_030718' => 'dca', 'Dinv20287' => 'din', 'Dinv22461' => 'din', 'Dinv22464' => 'din', 'Dinv29912' => 'din', 'Dinv29913' => 'din', 'Dinv34580' => 'din', 'Dinv34582' => 'din', 'Dinv44632' => 'din', 'Duzib052G0266' => 'dzi', 'Duzib133G0907' => 'dzi', 'Duzib133G1034' => 'dzi', 'Duzib138G0207' => 'dzi', 'Duzib138G0491' => 'dzi', 'Duzib151G0812' => 'dzi', 'Duzib151G1166' => 'dzi', 'Duzib168G0192' => 'dzi', 'Duzib211G0077' => 'dzi', 'Duzib212G0429' => 'dzi', 'Duzib212G0472' => 'dzi', 'ECA233G2617' => 'eca', 'ECA236G4188' => 'eca', 'ECA240G0936' => 'eca', 'ECA240G1129' => 'eca', 'ECA247G0623' => 'eca', 'EL10Ac5g10451' => 'bvu', 'EL10Ac5g10453' => 'bvu', 'EL10Ac5g10894' => 'bvu', 'Eucgr.H00192' => 'egr', 'Eucgr.H00193' => 'egr', 'Eucgr.H00194' => 'egr', 'Eucgr.J01562' => 'egr', 'Eucgr.K03301' => 'egr', 'FAN02G0632' => 'fan', 'FAN05G5378' => 'fan', 'FAN09G3247' => 'fan', 'FAN12G0435' => 'fan', 'FAN12G2426' => 'fan', 'FAN14G1707' => 'fan', 'FAN14G4725' => 'fan', 'FAN15G2071' => 'fan', 'FAN17G3065' => 'fan', 'FAN19G1376' => 'fan', 'FAN20G0354' => 'fan', 'FAN20G2429' => 'fan', 'FAN20G2658' => 'fan', 'FAN24G2343' => 'fan', 'FAN27G2362' => 'fan', 'FAN28G1765' => 'fan', 'FvH4_1g16020' => 'fve', 'FvH4_2g04890' => 'fve', 'FvH4_2g22270' => 'fve', 'FvH4_4g02630' => 'fve', 'FvH4_4g02640' => 'fve', 'FvH4_6g02650' => 'fve', 'Glyma.02G140600' => 'gma', 'Glyma.03G159900' => 'gma', 'Glyma.05G234800' => 'gma', 'Glyma.07G269600' => 'gma', 'Glyma.08G042300' => 'gma', 'Glyma.10G033500' => 'gma', 'Glyma.10G185200' => 'gma', 'Glyma.17G004300' => 'gma', 'Glyma.19G161900' => 'gma', 'Glyma.20G205100' => 'gma', 'Glyma.20G205200' => 'gma', 'Gohir.A01G139101' => 'ghi', 'Gohir.A02G035600' => 'ghi', 'Gohir.A02G117901' => 'ghi', 'Gohir.A07G210100' => 'ghi', 'Gohir.A07G210200' => 'ghi', 'Gohir.A08G061100' => 'ghi', 'Gohir.A09G223000' => 'ghi', 'Gohir.A09G223100' => 'ghi', 'Gohir.A10G113900' => 'ghi', 'Gohir.A10G114000' => 'ghi', 'Gohir.D02G042300' => 'ghi', 'Gohir.D07G216100' => 'ghi', 'Gohir.D07G216200' => 'ghi', 'Gohir.D08G070400' => 'ghi', 'Gohir.D09G225000' => 'ghi', 'Gohir.D09G225100' => 'ghi', 'Gohir.D10G152300' => 'ghi', 'Gohir.D10G153200' => 'ghi', 'Gohir.D11G133701' => 'ghi', 'Gorai.004G074100' => 'gra', 'Gorai.005G046800' => 'gra', 'Gorai.006G246500' => 'gra', 'Gorai.006G246600' => 'gra', 'Gorai.007G142900' => 'gra', 'Gorai.011G171000' => 'gra', 'Gorai.011G171100' => 'gra', 'Gorai.013G104300' => 'gra', 'Gorai.013G104400' => 'gra', 'GSVIVG01000754001' => 'vvi', 'GSVIVG01000756001' => 'vvi', 'GSVIVG01010903001' => 'vvi', 'GSVIVG01017623001' => 'vvi', 'GSVIVG01018113001' => 'vvi', 'GSVIVG01018116001' => 'vvi', 'GSVIVG01018118001' => 'vvi', 'HanXRQChr03g0076211' => 'han', 'HanXRQChr03g0092431' => 'han', 'HanXRQChr03g0092441' => 'han', 'HanXRQChr03g0092591' => 'han', 'HanXRQChr03g0092671' => 'han', 'HanXRQChr03g0092681' => 'han', 'HanXRQChr03g0092691' => 'han', 'HanXRQChr03g0092701' => 'han', 'HanXRQChr03g0092721' => 'han', 'HanXRQChr03g0092731' => 'han', 'HanXRQChr04g0113681' => 'han', 'HanXRQChr10g0281371' => 'han', 'HanXRQChr11g0337141' => 'han', 'HanXRQChr13g0424521' => 'han', 'HanXRQChr13g0424531' => 'han', 'HanXRQChr13g0424541' => 'han', 'HanXRQChr16g0498221' => 'han', 'Haze_04377' => 'cav', 'Haze_11298' => 'cav', 'Haze_24547' => 'cav', 'Haze_24550' => 'cav', 'Haze_26587' => 'cav', 'Hma1.2p1_0650F.1_g195410' => 'hma', 'Hma1.2p1_0893F.1_g233470' => 'hma', 'HPP92_006508' => 'vpl', 'HPP92_024780' => 'vpl', 'Hund02688' => 'sun', 'Hund09380' => 'sun', 'Hund09381' => 'sun', 'Hund09832' => 'sun', 'Hund09833' => 'sun', 'Hund11351' => 'sun', 'Hund11513' => 'sun', 'Lalb_Chr06g0162591' => 'lal', 'Lalb_Chr06g0162601' => 'lal', 'Lalb_Chr06g0169321' => 'lal', 'Lalb_Chr09g0330951' => 'lal', 'Lalb_Chr16g0387631' => 'lal', 'Lalb_Chr21g0306241' => 'lal', 'Lalb_Chr25g0290051' => 'lal', 'Lalb_Chr25g0290061' => 'lal', 'Lalb_Chr25g0290071' => 'lal', 'Lj1g0003876' => 'lja', 'Lj1P1207T36' => 'lonja', 'Lj2C1156G12' => 'lonja', 'Lj3A793G39' => 'lonja', 'Lj3C580G2' => 'lonja', 'Lj3C780G2' => 'lonja', 'Lj3C780T4' => 'lonja', 'Lj3C793G9' => 'lonja', 'Lj4g0012960' => 'lja', 'Lj5g0021252' => 'lja', 'Lj5g0021484' => 'lja', 'Lj5g0024528' => 'lja', 'Lj6A399T12' => 'lonja', 'Lj6A656G65' => 'lonja', 'Lsat_1_v5_gn_3_125500' => 'lsa', 'Lsat_1_v5_gn_3_125540' => 'lsa', 'Lsat_1_v5_gn_5_72701' => 'lsa', 'Lsat_1_v5_gn_8_91560' => 'lsa', 'Lsat_1_v5_gn_9_9640' => 'lsa', 'Manes.01G200600' => 'mes', 'Manes.01G200700' => 'mes', 'Manes.03G168900' => 'mes', 'Manes.03G169000' => 'mes', 'Manes.05G085801' => 'mes', 'Manes.05G086200' => 'mes', 'Manes.15G036700' => 'mes', 'Manes.15G036900' => 'mes', 'Mapoly0004s0172' => 'mpo', 'Mapoly0023s0001' => 'mpo', 'Mapoly0142s0012' => 'mpo', 'MBI01_g32854_MAGBIO' => 'mbi', 'MBI11_g24427_MAGBIO' => 'mbi', 'MBI11_g47319_MAGBIO' => 'mbi', 'MCO01G433' => 'mco', 'MD00G1187800' => 'mdo', 'MD04G1226500' => 'mdo', 'MD05G1203900' => 'mdo', 'MD10G1191100' => 'mdo', 'MD12G1243500' => 'mdo', 'MD13G1207000' => 'mdo', 'MD13G1207100' => 'mdo', 'MD16G1208600' => 'mdo', 'Medtr1g050352' => 'mtr', 'Medtr1g070385' => 'mtr', 'Medtr1g070450' => 'mtr', 'Medtr1g075200' => 'mtr', 'Medtr1g075250' => 'mtr', 'Medtr1g075260' => 'mtr', 'Medtr1g475250' => 'mtr', 'Medtr4g075450' => 'mtr', 'Medtr7g096300' => 'mtr', 'Medtr8g105110' => 'mtr', 'MELO3C006470.2' => 'cme', 'MELO3C006471.2' => 'cme', 'MELO3C020772.2' => 'cme', 'MELO3C026780.2' => 'cme', 'MELO3C026781.2' => 'cme', 'Migut.D00390' => 'egut', 'Migut.G00435' => 'egut', 'Migut.G00436' => 'egut', 'Migut.G00718' => 'egut', 'MSTRG.21891' => 'ama', 'MSTRG.26910' => 'ama', 'MSTRG.4099' => 'ama', 'MSTRG.9925' => 'ama', 'Nitab4.5_0000165g0010' => 'nta', 'Nitab4.5_0000209g0180' => 'nta', 'Nitab4.5_0000244g0440' => 'nta', 'Nitab4.5_0000525g0220' => 'nta', 'Nitab4.5_0001597g0020' => 'nta', 'Nitab4.5_0001878g0040' => 'nta', 'Nitab4.5_0001878g0060' => 'nta', 'Nitab4.5_0002838g0100' => 'nta', 'Nitab4.5_0002838g0120' => 'nta', 'Nitab4.5_0004798g0030' => 'nta', 'Nitab4.5_0005420g0010' => 'nta', 'Nitab4.5_0005507g0010' => 'nta', 'Nitab4.5_0005574g0020' => 'nta', 'Nitab4.5_0005838g0010' => 'nta', 'Nitab4.5_0010580g0020' => 'nta', 'Nn1g02599' => 'nnu', 'Nn1g02608' => 'nnu', 'Nn3g17742' => 'nnu', 'Nn3g19534' => 'nnu', 'Nn3g19535' => 'nnu', 'Oeu008790.1' => 'oeu', 'Oeu008792.1' => 'oeu', 'Oeu032590.1' => 'oeu', 'Oeu035349.1' => 'oeu', 'Oeu049791.1' => 'oeu', 'Os01g0774500' => 'osa', 'Os03g0628800' => 'osa', 'Os03g0798600' => 'osa', 'Os05g0508800' => 'osa', 'Peaxi162Scf00036g02018' => 'pax', 'Peaxi162Scf00578g00032' => 'pax', 'Peaxi162Scf00578g00317' => 'pax', 'Peaxi162Scf00785g00114' => 'pax', 'Peaxi162Scf00813g00119' => 'pax', 'Peaxi162Scf00906g00227' => 'pax', 'PGR004G0875' => 'pgr', 'PGR004G2424' => 'pgr', 'PGR031G1239' => 'pgr', 'PGR031G2474' => 'pgr', 'PGR044G0423' => 'pgr', 'PGSC0003DMG400001128' => 'stu', 'PGSC0003DMG400007336' => 'stu', 'PGSC0003DMG400016318' => 'stu', 'PGSC0003DMG400016319' => 'stu', 'PGSC0003DMG400018074' => 'stu', 'Phvul.001G157700' => 'pvu', 'Phvul.002G148550' => 'pvu', 'Phvul.002G320200' => 'pvu', 'Phvul.003G089200' => 'pvu', 'Phvul.007G126000' => 'pvu', 'Phvul.007G126100' => 'pvu', 'Phvul.007G178000' => 'pvu', 'Phvul.007G178200' => 'pvu', 'Potri.002G043000' => 'ptr', 'Potri.002G043200' => 'ptr', 'Potri.003G123750' => 'ptr', 'Potri.005G055401' => 'ptr', 'Potri.005G219700' => 'ptr', 'Potri.005G220000' => 'ptr', 'Potri.008G161901' => 'ptr', 'Potri.008G162000' => 'ptr', 'Potri.008G162400' => 'ptr', 'Potri.010G076900' => 'ptr', 'Pp3c12_9180' => 'ppa', 'Pp3c13_19770' => 'ppa', 'Pp3c14_22950' => 'ppa', 'Pp3c16_12160' => 'ppa', 'Pp3c27_7820' => 'ppa', 'Pp3c2_3490' => 'ppa', 'Pp3c3_23700' => 'ppa', 'Pp3c3_36520' => 'ppa', 'Pp3c4_15250' => 'ppa', 'PRCOL_00007002' => 'pco', 'Prupe.1G030600' => 'ppe', 'Prupe.1G030700' => 'ppe', 'Prupe.6G345200' => 'ppe', 'Prupe.8G230300' => 'ppe', 'Prupe.8G230500' => 'ppe', 'Psat3g059600' => 'psa', 'Psat5g200920' => 'psa', 'Psat6g056440' => 'psa', 'Psat6g057360' => 'psa', 'Psat6g134120' => 'psa', 'Psat6g134160' => 'psa', 'Psat7g008640' => 'psa', 'Psat7g185240' => 'psa', 'PSO017G1330' => 'pso', 'PSO063G6097' => 'pso', 'PSO170G0835' => 'pso', 'PSO170G2499' => 'pso', 'PSO210G5058' => 'pso', 'PSO210G6154' => 'pso', 'PSO585G0031' => 'pso', 'PSO832G0264' => 'pso', 'PSO832G4288' => 'pso', 'QL03p027355' => 'qlo', 'QL03p027430' => 'qlo', 'QL04p081380' => 'qlo', 'QL06p015642' => 'qlo', 'QL06p015650' => 'qlo', 'QL06p015686' => 'qlo', 'QL12p042927' => 'qlo', 'QL93p1863_0035' => 'qlo', 'RcHm_v2.0_Chr3g0450581' => 'rch', 'RcHm_v2.0_Chr4g0390371' => 'rch', 'RcHm_v2.0_Chr4g0390381' => 'rch', 'RcHm_v2.0_Chr4g0390491' => 'rch', 'RcHm_v2.0_Chr4g0390501' => 'rch', 'RcHm_v2.0_Chr6g0289231' => 'rch', 'Rhsim04G0190400' => 'rsi', 'Rhsim04G0190500' => 'rsi', 'Rhsim04G0190600' => 'rsi', 'Rhsim13G0031400' => 'rsi', 'Rhsim13G0165600' => 'rsi', 'RhsimUnG0114600' => 'rsi', 'RhsimUnG0114700' => 'rsi', 'Sabra02G0034800' => 'sbr', 'Sabra02G0035100' => 'sbr', 'Sabra05G0168600' => 'sbr', 'Sabra05G0168800' => 'sbr', 'Sabra08G0123700' => 'sbr', 'Sabra10G0031900' => 'sbr', 'Sabra13G0039000' => 'sbr', 'SalBow2G0782' => 'sbo', 'SalBow2G1403' => 'sbo', 'SalBow4G0074' => 'sbo', 'SalBow4G2635' => 'sbo', 'SalBow5G3010' => 'sbo', 'Sc05g0000870' => 'sci', 'Sc05g0000890' => 'sci', 'Sc13g0005000' => 'sci', 'Sc13g0005030' => 'sci', 'Sc19g0003790' => 'sci', 'Sc19g0003800' => 'sci', 'Sed0003467' => 'sed', 'Sed0009355' => 'sed', 'Sed0009894' => 'sed', 'Sed0011972' => 'sed', 'Sed0021483' => 'sed', 'Sed0021750' => 'sed', 'Sed0026279' => 'sed', 'SEGI_05312' => 'sgi', 'SEGI_10112' => 'sgi', 'SEGI_15835' => 'sgi', 'SEGI_30386' => 'sgi', 'SEGI_34122' => 'sgi', 'SEGI_35063' => 'sgi', 'SGA_v2.0_scaffold101G29794' => 'sas', 'SGA_v2.0_scaffold1G00573' => 'sas', 'SGA_v2.0_scaffold79G25637' => 'sas', 'SGA_v2.0_scaffold88G27283' => 'sas', 'SGA_v2.0_scaffold88G27285' => 'sas', 'SGA_v2.0_scaffold88G27331' => 'sas', 'SHI09937' => 'shi', 'SMO119G0302' => 'smo', 'SMO137G0231' => 'smo', 'SMO367G1151' => 'smo', 'Solyc02g082000.3' => 'sly', 'Solyc06g031670.3' => 'sly', 'Solyc06g053810.3' => 'sly', 'Solyc07g025457.1' => 'sly', 'Solyc08g059740.1' => 'sly', 'Solyc08g059750.3' => 'sly', 'Solyc09g083370.3' => 'sly', 'Solyc12g038950.3' => 'sly', 'Sopen02g026630' => 'spe', 'Sopen06g018930' => 'spe', 'Sopen06g018940' => 'spe', 'Sopen08g009460' => 'spe', 'Sopen09g032290' => 'spe', 'Sp1g03080' => 'spa', 'Sp1g03090' => 'spa', 'Sp1g05480' => 'spa', 'Sp2g07860' => 'spa', 'Sp2g08430' => 'spa', 'Sp2g08440' => 'spa', 'Sp2g26200' => 'spa', 'Sp4g13170' => 'spa', 'Sp6g33840' => 'spa', 'SpUn1204_0010' => 'spa', 'TAR365G0908' => 'tar', 'TAR381G1270' => 'tar', 'TAR381G1651' => 'tar', 'TAR625G1131' => 'tar', 'TAR633G0962' => 'tar', 'TAR633G1729' => 'tar', 'TAR633G1864' => 'tar', 'TAR636G0221' => 'tar', 'TAR636G0314' => 'tar', 'TAR636G3202' => 'tar', 'THA.LOC104800805' => 'tha', 'THA.LOC104801096' => 'tha', 'THA.LOC104801555' => 'tha', 'THA.LOC104808491' => 'tha', 'THA.LOC104808595' => 'tha', 'THA.LOC104815985' => 'tha', 'THA.LOC104822250' => 'tha', 'THA.LOC104826071' => 'tha', 'Thecc.01G265200' => 'tca', 'Thecc.01G265300' => 'tca', 'Thecc.01G265700' => 'tca', 'Thecc.03G109100' => 'tca', 'Thecc.04G245900' => 'tca', 'Thecc.04G246000' => 'tca', 'Thhalv10003334m.g' => 'esa', 'Thhalv10005508m.g' => 'esa', 'Thhalv10005643m.g' => 'esa', 'Thhalv10007316m.g' => 'esa', 'Thhalv10009006m.g' => 'esa', 'Thhalv10009309m.g' => 'esa', 'Thhalv10014917m.g' => 'esa', 'Thhalv10014919m.g' => 'esa', 'Thhalv10015393m.g' => 'esa', 'Thhalv10016515m.g' => 'esa', 'Thhalv10029242m.g' => 'esa', 'TPR.G16654' => 'tpr', 'TPR.G20589' => 'tpr', 'TPR.G23029' => 'tpr', 'TPR.G27731' => 'tpr', 'TPR.G28889' => 'tpr', 'TPR.G28899' => 'tpr', 'TPR.G30846' => 'tpr', 'TPR.G5452' => 'tpr', 'TPR.G5713' => 'tpr', 'TPR.G9046' => 'tpr', 'TPR.G9061' => 'tpr', 'TWI09G1075' => 'twi', 'TWI12G0806' => 'twi', 'TWI18G0108' => 'twi', 'TWI53G1361' => 'twi', 'TWI73G0185' => 'twi', 'TWI73G0427' => 'twi', 'unitig_37.g12001' => 'ugi', 'unitig_747.g21660' => 'ugi', 'unitig_748.g7232' => 'ugi', 'unitig_748.g7315' => 'ugi', 'unitig_85.g27262' => 'ugi', 'unitig_92.g28220' => 'ugi', 'vmacro02632' => 'vma', 'vmacro08410' => 'vma', 'vmacro08411' => 'vma', 'vmacro15407' => 'vma', 'VMungo0251G3619' => 'vmu', 'VMungo0720G1204' => 'vmu', 'VMungo0720G1918' => 'vmu', 'VMungo0720G2387' => 'vmu', 'VMungo0720G2961' => 'vmu', 'VMungo1215G2154' => 'vmu', 'VMungo1383G2411' => 'vmu', 'Zm00001eb051130' => 'zma', 'Zm00001eb116830' => 'zma', 'Zm00001eb116850' => 'zma', 'Zm00001eb151740' => 'zma', 'Zm00001eb292360' => 'zma', 'Zm00001eb301640' => 'zma' ) $gf_id = 'HOM05D000856' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000856' ) $data_identifier = 'HOM05D000856' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 13, 'ath' => (int) 10, 'atr' => (int) 1, 'acertr' => (int) 8, 'cqu' => (int) 6, 'bca' => (int) 21, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 11, 'car' => (int) 9, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 8, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 5, 'fan' => (int) 16, 'fve' => (int) 6, 'gma' => (int) 11, 'ghi' => (int) 19, 'gra' => (int) 9, 'vvi' => (int) 7, 'han' => (int) 17, 'cav' => (int) 5, 'hma' => (int) 2, 'vpl' => (int) 2, 'sun' => (int) 7, 'lal' => (int) 9, 'lja' => (int) 5, 'lonja' => (int) 9, 'lsa' => (int) 5, 'mes' => (int) 8, 'mpo' => (int) 3, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 10, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 15, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 9, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 9, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 6, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 5, 'spa' => (int) 10, 'tar' => (int) 10, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 11, 'tpr' => (int) 11, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 4, 'vmu' => (int) 7, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb301640' $species_info = array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ) $local_species = 'ath' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000856', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p00010' => 'bna', 'A03p04160' => 'bna', 'A03p17160' => 'bna', 'A04p23370' => 'bna', 'A05p14860' => 'bna', 'A08p37020' => 'bna', 'A09p08050' => 'bna', 'A09p66800' => 'bna', 'A09p67940' => 'bna', 'A10p02680' => 'bna', 'A10p05320' => 'bna', 'Aa31LG1G20560' => 'aar', 'Aa31LG1G20610' => 'aar', 'Aa31LG1G7810' => 'aar', 'Aa31LG5G3590' => 'aar', 'Aa31LG5G6140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3819' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4683' => 'aag', 'Actinidia04480' => 'ach', 'Actinidia05466' => 'ach', 'Actinidia08445' => 'ach', 'Actinidia21170' => 'ach', 'Actinidia24812' => 'ach', 'Actinidia24951' => 'ach', 'Actinidia40088' => 'ach', 'Ah.02g111660' => 'amhyb', 'Ah.11g048900' => 'amhyb', 'Ah.11g049910' => 'amhyb', 'AL1G13870' => 'aly', 'AL1G13880' => 'aly', 'AL1G16760' => 'aly', 'AL390U10020' => 'aly', 'AL4G25520' => 'aly', 'AL6G19890' => 'aly', 'AL6G19900' => 'aly', 'AL6G19910' => 'aly', 'AL8G40100' => 'aly', 'Aqoxy2G03562' => 'aox', 'Aqoxy5G00316' => 'aox', 'Aqoxy5G00926' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1628KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1H403S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2FU6SJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.882I6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8YRY2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YN1SN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AF70II' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZA8L1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F916KL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHRD8H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KTZ8QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S22EMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8M29T' => 'arhy', 'AT1G04270' => 'ath', 'AT1G04280' => 'ath', 'AT1G06750' => 'ath', 'AT1G33850' => 'ath', 'AT2G30630' => 'ath', 'AT5G09490' => 'ath', 'AT5G09500' => 'ath', 'AT5G09510' => 'ath', 'AT5G43640' => 'ath', 'AT5G63070' => 'ath', 'ATR0605G315' => 'atr', 'Atru.chr11.175' => 'acertr', 'Atru.chr11.653' => 'acertr', 'Atru.chr3.1616' => 'acertr', 'Atru.chr4.2230' => 'acertr', 'Atru.chr4.2232' => 'acertr', 'Atru.chr5.1598' => 'acertr', 'Atru.chr5.1600' => 'acertr', 'Atru.chr5.2188' => 'acertr', 'AUR62008326' => 'cqu', 'AUR62011922' => 'cqu', 'AUR62011924' => 'cqu', 'AUR62021771' => 'cqu', 'AUR62032237' => 'cqu', 'AUR62032240' => 'cqu', 'BcaB01g05572' => 'bca', 'BcaB02g10337' => 'bca', 'BcaB04g19944' => 'bca', 'BcaB05g21548' => 'bca', 'BcaB05g21549' => 'bca', 'BcaB05g23227' => 'bca', 'BcaB06g26256' => 'bca', 'BcaB06g26257' => 'bca', 'BcaB06g28379' => 'bca', 'BcaC02g11159' => 'bca', 'BcaC03g13258' => 'bca', 'BcaC03g13259' => 'bca', 'BcaC05g24456' => 'bca', 'BcaC05g24457' => 'bca', 'BcaC07g36922' => 'bca', 'BcaC07g36923' => 'bca', 'BcaC07g42050' => 'bca', 'BcaC07g42176' => 'bca', 'BcaC07g42195' => 'bca', 'BcaC07g42196' => 'bca', 'BcaNung06674' => 'bca', 'BolC2t06351H' => 'bol', 'BolC2t06352H' => 'bol', 'BolC3t12993H' => 'bol', 'BolC4t23525H' => 'bol', 'BolC4t27475H' => 'bol', 'BolC5t29025H' => 'bol', 'BolC5t29026H' => 'bol', 'BolC8t46898H' => 'bol', 'BolC8t46899H' => 'bol', 'BolC8t52630H' => 'bol', 'BolC8t52765H' => 'bol', 'BolC9t53824H' => 'bol', 'BraA03t09760Z' => 'bra', 'BraA03t10990Z' => 'bra', 'BraA05t20413Z' => 'bra', 'BraA08t35602Z' => 'bra', 'BraA09t36458Z' => 'bra', 'BraA09t42018Z' => 'bra', 'BraA09t42129Z' => 'bra', 'BraA10t42536Z' => 'bra', 'BraA10t42537Z' => 'bra', 'C01p10690' => 'bna', 'C02p03890' => 'bna', 'C02p03900' => 'bna', 'C03p04620' => 'bna', 'C04p19870' => 'bna', 'C04p59670' => 'bna', 'C05p02460' => 'bna', 'C05p02470' => 'bna', 'C08p00980' => 'bna', 'C08p00990' => 'bna', 'C08p51030' => 'bna', 'C08p52360' => 'bna', 'C09p09120' => 'bna', 'CAN.G19.15' => 'can', 'CAN.G251.10' => 'can', 'CAN.G251.9' => 'can', 'CAN.G398.24' => 'can', 'CAN.G410.32' => 'can', 'CAN.G881.2' => 'can', 'CANSAT01G3025' => 'cansat', 'CANSAT78G1211' => 'cansat', 'CANSAT78G1218' => 'cansat', 'CANSAT78G1521' => 'cansat', 'CANSAT78G1670' => 'cansat', 'CARHR003600' => 'chi', 'CARHR003610' => 'chi', 'CARHR006290' => 'chi', 'CARHR006430' => 'chi', 'CARHR124110' => 'chi', 'CARHR203870' => 'chi', 'CARHR203880' => 'chi', 'CARHR203890' => 'chi', 'CARHR276880' => 'chi', 'Carub.0001s0346' => 'cru', 'Carub.0001s0347' => 'cru', 'Carub.0001s0607' => 'cru', 'Carub.0003s2768' => 'cru', 'Carub.0003s2769' => 'cru', 'Carub.0004s1178' => 'cru', 'Carub.0006s0806' => 'cru', 'Carub.0006s0807' => 'cru', 'Carub.0006s0808' => 'cru', 'Carub.0008s0501' => 'cru', 'Carub.0008s2379' => 'cru', 'Ca_08655_v3' => 'car', 'Ca_08922_v3' => 'car', 'Ca_08923_v3' => 'car', 'Ca_09119_v3' => 'car', 'Ca_09703_v3' => 'car', 'Ca_09705_v3' => 'car', 'Ca_09835_v3' => 'car', 'Ca_26403_v3' => 'car', 'Ca_30719_v3' => 'car', 'CBR_g17958' => 'cbr', 'CBR_g40516' => 'cbr', 'Cc00_g05350' => 'ccan', 'Cc01_g18690' => 'ccan', 'Cc03_g04830' => 'ccan', 'Cc03_g04850' => 'ccan', 'CDE02G4469' => 'cde', 'CDE06G0883' => 'cde', 'CDE06G1295' => 'cde', 'CDE06G1390' => 'cde', 'CDE07G0584' => 'cde', 'CDE07G1084' => 'cde', 'CDE08G1259' => 'cde', 'Cfa002341' => 'cfa', 'Cfa024337' => 'cfa', 'Ciclev10004749m.g' => 'ccl', 'Ciclev10006127m.g' => 'ccl', 'Ciclev10019720m.g' => 'ccl', 'Ciclev10022652m.g' => 'ccl', 'CiPaw.01G190400' => 'cil', 'CiPaw.01G190500' => 'cil', 'CiPaw.02G116400' => 'cil', 'CiPaw.02G116500' => 'cil', 'CiPaw.04G183000' => 'cil', 'CiPaw.04G183300' => 'cil', 'ClCG05G004610' => 'cla', 'ClCG05G004620' => 'cla', 'ClCG06G006730' => 'cla', 'ClCG06G006740' => 'cla', 'ClCG11G003690' => 'cla', 'COL.COLO4_08276' => 'col', 'COL.COLO4_08277' => 'col', 'COL.COLO4_15787' => 'col', 'COL.COLO4_15789' => 'col', 'Cpa.g.c44815' => 'cpa', 'Cpa.g.sc52.144' => 'cpa', 'Cpa.g.sc58.46' => 'cpa', 'Cpa.g.sc58.47' => 'cpa', 'Cre08.g360900' => 'cre', 'CsaV3_2G013030' => 'csa', 'CsaV3_2G013050' => 'csa', 'CsaV3_2G015620' => 'csa', 'CsaV3_3G012590' => 'csa', 'CsaV3_3G012600' => 'csa', 'CSS0001641' => 'camsi', 'CSS0008310' => 'camsi', 'CSS0013011' => 'camsi', 'CSS0017147' => 'camsi', 'CSS0022970' => 'camsi', 'CSS0025655' => 'camsi', 'CSS0028665' => 'camsi', 'CSS0029117' => 'camsi', 'CSS0032024' => 'camsi', 'CSS0039681' => 'camsi', 'CSS0046516' => 'camsi', 'CSS0050307' => 'camsi', 'DCAR_005871' => 'dca', 'DCAR_007342' => 'dca', 'DCAR_024228' => 'dca', 'DCAR_027277' => 'dca', 'DCAR_030718' => 'dca', 'Dinv20287' => 'din', 'Dinv22461' => 'din', 'Dinv22464' => 'din', 'Dinv29912' => 'din', 'Dinv29913' => 'din', 'Dinv34580' => 'din', 'Dinv34582' => 'din', 'Dinv44632' => 'din', 'Duzib052G0266' => 'dzi', 'Duzib133G0907' => 'dzi', 'Duzib133G1034' => 'dzi', 'Duzib138G0207' => 'dzi', 'Duzib138G0491' => 'dzi', 'Duzib151G0812' => 'dzi', 'Duzib151G1166' => 'dzi', 'Duzib168G0192' => 'dzi', 'Duzib211G0077' => 'dzi', 'Duzib212G0429' => 'dzi', 'Duzib212G0472' => 'dzi', 'ECA233G2617' => 'eca', 'ECA236G4188' => 'eca', 'ECA240G0936' => 'eca', 'ECA240G1129' => 'eca', 'ECA247G0623' => 'eca', 'EL10Ac5g10451' => 'bvu', 'EL10Ac5g10453' => 'bvu', 'EL10Ac5g10894' => 'bvu', 'Eucgr.H00192' => 'egr', 'Eucgr.H00193' => 'egr', 'Eucgr.H00194' => 'egr', 'Eucgr.J01562' => 'egr', 'Eucgr.K03301' => 'egr', 'FAN02G0632' => 'fan', 'FAN05G5378' => 'fan', 'FAN09G3247' => 'fan', 'FAN12G0435' => 'fan', 'FAN12G2426' => 'fan', 'FAN14G1707' => 'fan', 'FAN14G4725' => 'fan', 'FAN15G2071' => 'fan', 'FAN17G3065' => 'fan', 'FAN19G1376' => 'fan', 'FAN20G0354' => 'fan', 'FAN20G2429' => 'fan', 'FAN20G2658' => 'fan', 'FAN24G2343' => 'fan', 'FAN27G2362' => 'fan', 'FAN28G1765' => 'fan', 'FvH4_1g16020' => 'fve', 'FvH4_2g04890' => 'fve', 'FvH4_2g22270' => 'fve', 'FvH4_4g02630' => 'fve', 'FvH4_4g02640' => 'fve', 'FvH4_6g02650' => 'fve', 'Glyma.02G140600' => 'gma', 'Glyma.03G159900' => 'gma', 'Glyma.05G234800' => 'gma', 'Glyma.07G269600' => 'gma', 'Glyma.08G042300' => 'gma', 'Glyma.10G033500' => 'gma', 'Glyma.10G185200' => 'gma', 'Glyma.17G004300' => 'gma', 'Glyma.19G161900' => 'gma', 'Glyma.20G205100' => 'gma', 'Glyma.20G205200' => 'gma', 'Gohir.A01G139101' => 'ghi', 'Gohir.A02G035600' => 'ghi', 'Gohir.A02G117901' => 'ghi', 'Gohir.A07G210100' => 'ghi', 'Gohir.A07G210200' => 'ghi', 'Gohir.A08G061100' => 'ghi', 'Gohir.A09G223000' => 'ghi', 'Gohir.A09G223100' => 'ghi', 'Gohir.A10G113900' => 'ghi', 'Gohir.A10G114000' => 'ghi', 'Gohir.D02G042300' => 'ghi', 'Gohir.D07G216100' => 'ghi', 'Gohir.D07G216200' => 'ghi', 'Gohir.D08G070400' => 'ghi', 'Gohir.D09G225000' => 'ghi', 'Gohir.D09G225100' => 'ghi', 'Gohir.D10G152300' => 'ghi', 'Gohir.D10G153200' => 'ghi', 'Gohir.D11G133701' => 'ghi', 'Gorai.004G074100' => 'gra', 'Gorai.005G046800' => 'gra', 'Gorai.006G246500' => 'gra', 'Gorai.006G246600' => 'gra', 'Gorai.007G142900' => 'gra', 'Gorai.011G171000' => 'gra', 'Gorai.011G171100' => 'gra', 'Gorai.013G104300' => 'gra', 'Gorai.013G104400' => 'gra', 'GSVIVG01000754001' => 'vvi', 'GSVIVG01000756001' => 'vvi', 'GSVIVG01010903001' => 'vvi', 'GSVIVG01017623001' => 'vvi', 'GSVIVG01018113001' => 'vvi', 'GSVIVG01018116001' => 'vvi', 'GSVIVG01018118001' => 'vvi', 'HanXRQChr03g0076211' => 'han', 'HanXRQChr03g0092431' => 'han', 'HanXRQChr03g0092441' => 'han', 'HanXRQChr03g0092591' => 'han', 'HanXRQChr03g0092671' => 'han', 'HanXRQChr03g0092681' => 'han', 'HanXRQChr03g0092691' => 'han', 'HanXRQChr03g0092701' => 'han', 'HanXRQChr03g0092721' => 'han', 'HanXRQChr03g0092731' => 'han', 'HanXRQChr04g0113681' => 'han', 'HanXRQChr10g0281371' => 'han', 'HanXRQChr11g0337141' => 'han', 'HanXRQChr13g0424521' => 'han', 'HanXRQChr13g0424531' => 'han', 'HanXRQChr13g0424541' => 'han', 'HanXRQChr16g0498221' => 'han', 'Haze_04377' => 'cav', 'Haze_11298' => 'cav', 'Haze_24547' => 'cav', 'Haze_24550' => 'cav', 'Haze_26587' => 'cav', 'Hma1.2p1_0650F.1_g195410' => 'hma', 'Hma1.2p1_0893F.1_g233470' => 'hma', 'HPP92_006508' => 'vpl', 'HPP92_024780' => 'vpl', 'Hund02688' => 'sun', 'Hund09380' => 'sun', 'Hund09381' => 'sun', 'Hund09832' => 'sun', 'Hund09833' => 'sun', 'Hund11351' => 'sun', 'Hund11513' => 'sun', 'Lalb_Chr06g0162591' => 'lal', 'Lalb_Chr06g0162601' => 'lal', 'Lalb_Chr06g0169321' => 'lal', 'Lalb_Chr09g0330951' => 'lal', 'Lalb_Chr16g0387631' => 'lal', 'Lalb_Chr21g0306241' => 'lal', 'Lalb_Chr25g0290051' => 'lal', 'Lalb_Chr25g0290061' => 'lal', 'Lalb_Chr25g0290071' => 'lal', 'Lj1g0003876' => 'lja', 'Lj1P1207T36' => 'lonja', 'Lj2C1156G12' => 'lonja', 'Lj3A793G39' => 'lonja', 'Lj3C580G2' => 'lonja', 'Lj3C780G2' => 'lonja', 'Lj3C780T4' => 'lonja', 'Lj3C793G9' => 'lonja', 'Lj4g0012960' => 'lja', 'Lj5g0021252' => 'lja', 'Lj5g0021484' => 'lja', 'Lj5g0024528' => 'lja', 'Lj6A399T12' => 'lonja', 'Lj6A656G65' => 'lonja', 'Lsat_1_v5_gn_3_125500' => 'lsa', 'Lsat_1_v5_gn_3_125540' => 'lsa', 'Lsat_1_v5_gn_5_72701' => 'lsa', 'Lsat_1_v5_gn_8_91560' => 'lsa', 'Lsat_1_v5_gn_9_9640' => 'lsa', 'Manes.01G200600' => 'mes', 'Manes.01G200700' => 'mes', 'Manes.03G168900' => 'mes', 'Manes.03G169000' => 'mes', 'Manes.05G085801' => 'mes', 'Manes.05G086200' => 'mes', 'Manes.15G036700' => 'mes', 'Manes.15G036900' => 'mes', 'Mapoly0004s0172' => 'mpo', 'Mapoly0023s0001' => 'mpo', 'Mapoly0142s0012' => 'mpo', 'MBI01_g32854_MAGBIO' => 'mbi', 'MBI11_g24427_MAGBIO' => 'mbi', 'MBI11_g47319_MAGBIO' => 'mbi', 'MCO01G433' => 'mco', 'MD00G1187800' => 'mdo', 'MD04G1226500' => 'mdo', 'MD05G1203900' => 'mdo', 'MD10G1191100' => 'mdo', 'MD12G1243500' => 'mdo', 'MD13G1207000' => 'mdo', 'MD13G1207100' => 'mdo', 'MD16G1208600' => 'mdo', 'Medtr1g050352' => 'mtr', 'Medtr1g070385' => 'mtr', 'Medtr1g070450' => 'mtr', 'Medtr1g075200' => 'mtr', 'Medtr1g075250' => 'mtr', 'Medtr1g075260' => 'mtr', 'Medtr1g475250' => 'mtr', 'Medtr4g075450' => 'mtr', 'Medtr7g096300' => 'mtr', 'Medtr8g105110' => 'mtr', 'MELO3C006470.2' => 'cme', 'MELO3C006471.2' => 'cme', 'MELO3C020772.2' => 'cme', 'MELO3C026780.2' => 'cme', 'MELO3C026781.2' => 'cme', 'Migut.D00390' => 'egut', 'Migut.G00435' => 'egut', 'Migut.G00436' => 'egut', 'Migut.G00718' => 'egut', 'MSTRG.21891' => 'ama', 'MSTRG.26910' => 'ama', 'MSTRG.4099' => 'ama', 'MSTRG.9925' => 'ama', 'Nitab4.5_0000165g0010' => 'nta', 'Nitab4.5_0000209g0180' => 'nta', 'Nitab4.5_0000244g0440' => 'nta', 'Nitab4.5_0000525g0220' => 'nta', 'Nitab4.5_0001597g0020' => 'nta', 'Nitab4.5_0001878g0040' => 'nta', 'Nitab4.5_0001878g0060' => 'nta', 'Nitab4.5_0002838g0100' => 'nta', 'Nitab4.5_0002838g0120' => 'nta', 'Nitab4.5_0004798g0030' => 'nta', 'Nitab4.5_0005420g0010' => 'nta', 'Nitab4.5_0005507g0010' => 'nta', 'Nitab4.5_0005574g0020' => 'nta', 'Nitab4.5_0005838g0010' => 'nta', 'Nitab4.5_0010580g0020' => 'nta', 'Nn1g02599' => 'nnu', 'Nn1g02608' => 'nnu', 'Nn3g17742' => 'nnu', 'Nn3g19534' => 'nnu', 'Nn3g19535' => 'nnu', 'Oeu008790.1' => 'oeu', 'Oeu008792.1' => 'oeu', 'Oeu032590.1' => 'oeu', 'Oeu035349.1' => 'oeu', 'Oeu049791.1' => 'oeu', 'Os01g0774500' => 'osa', 'Os03g0628800' => 'osa', 'Os03g0798600' => 'osa', 'Os05g0508800' => 'osa', 'Peaxi162Scf00036g02018' => 'pax', 'Peaxi162Scf00578g00032' => 'pax', 'Peaxi162Scf00578g00317' => 'pax', 'Peaxi162Scf00785g00114' => 'pax', 'Peaxi162Scf00813g00119' => 'pax', 'Peaxi162Scf00906g00227' => 'pax', 'PGR004G0875' => 'pgr', 'PGR004G2424' => 'pgr', 'PGR031G1239' => 'pgr', 'PGR031G2474' => 'pgr', 'PGR044G0423' => 'pgr', 'PGSC0003DMG400001128' => 'stu', 'PGSC0003DMG400007336' => 'stu', 'PGSC0003DMG400016318' => 'stu', 'PGSC0003DMG400016319' => 'stu', 'PGSC0003DMG400018074' => 'stu', 'Phvul.001G157700' => 'pvu', 'Phvul.002G148550' => 'pvu', 'Phvul.002G320200' => 'pvu', 'Phvul.003G089200' => 'pvu', 'Phvul.007G126000' => 'pvu', 'Phvul.007G126100' => 'pvu', 'Phvul.007G178000' => 'pvu', 'Phvul.007G178200' => 'pvu', 'Potri.002G043000' => 'ptr', 'Potri.002G043200' => 'ptr', 'Potri.003G123750' => 'ptr', 'Potri.005G055401' => 'ptr', 'Potri.005G219700' => 'ptr', 'Potri.005G220000' => 'ptr', 'Potri.008G161901' => 'ptr', 'Potri.008G162000' => 'ptr', 'Potri.008G162400' => 'ptr', 'Potri.010G076900' => 'ptr', 'Pp3c12_9180' => 'ppa', 'Pp3c13_19770' => 'ppa', 'Pp3c14_22950' => 'ppa', 'Pp3c16_12160' => 'ppa', 'Pp3c27_7820' => 'ppa', 'Pp3c2_3490' => 'ppa', 'Pp3c3_23700' => 'ppa', 'Pp3c3_36520' => 'ppa', 'Pp3c4_15250' => 'ppa', 'PRCOL_00007002' => 'pco', 'Prupe.1G030600' => 'ppe', 'Prupe.1G030700' => 'ppe', 'Prupe.6G345200' => 'ppe', 'Prupe.8G230300' => 'ppe', 'Prupe.8G230500' => 'ppe', 'Psat3g059600' => 'psa', 'Psat5g200920' => 'psa', 'Psat6g056440' => 'psa', 'Psat6g057360' => 'psa', 'Psat6g134120' => 'psa', 'Psat6g134160' => 'psa', 'Psat7g008640' => 'psa', 'Psat7g185240' => 'psa', 'PSO017G1330' => 'pso', 'PSO063G6097' => 'pso', 'PSO170G0835' => 'pso', 'PSO170G2499' => 'pso', 'PSO210G5058' => 'pso', 'PSO210G6154' => 'pso', 'PSO585G0031' => 'pso', 'PSO832G0264' => 'pso', 'PSO832G4288' => 'pso', 'QL03p027355' => 'qlo', 'QL03p027430' => 'qlo', 'QL04p081380' => 'qlo', 'QL06p015642' => 'qlo', 'QL06p015650' => 'qlo', 'QL06p015686' => 'qlo', 'QL12p042927' => 'qlo', 'QL93p1863_0035' => 'qlo', 'RcHm_v2.0_Chr3g0450581' => 'rch', 'RcHm_v2.0_Chr4g0390371' => 'rch', 'RcHm_v2.0_Chr4g0390381' => 'rch', 'RcHm_v2.0_Chr4g0390491' => 'rch', 'RcHm_v2.0_Chr4g0390501' => 'rch', 'RcHm_v2.0_Chr6g0289231' => 'rch', 'Rhsim04G0190400' => 'rsi', 'Rhsim04G0190500' => 'rsi', 'Rhsim04G0190600' => 'rsi', 'Rhsim13G0031400' => 'rsi', 'Rhsim13G0165600' => 'rsi', 'RhsimUnG0114600' => 'rsi', 'RhsimUnG0114700' => 'rsi', 'Sabra02G0034800' => 'sbr', 'Sabra02G0035100' => 'sbr', 'Sabra05G0168600' => 'sbr', 'Sabra05G0168800' => 'sbr', 'Sabra08G0123700' => 'sbr', 'Sabra10G0031900' => 'sbr', 'Sabra13G0039000' => 'sbr', 'SalBow2G0782' => 'sbo', 'SalBow2G1403' => 'sbo', 'SalBow4G0074' => 'sbo', 'SalBow4G2635' => 'sbo', 'SalBow5G3010' => 'sbo', 'Sc05g0000870' => 'sci', 'Sc05g0000890' => 'sci', 'Sc13g0005000' => 'sci', 'Sc13g0005030' => 'sci', 'Sc19g0003790' => 'sci', 'Sc19g0003800' => 'sci', 'Sed0003467' => 'sed', 'Sed0009355' => 'sed', 'Sed0009894' => 'sed', 'Sed0011972' => 'sed', 'Sed0021483' => 'sed', 'Sed0021750' => 'sed', 'Sed0026279' => 'sed', 'SEGI_05312' => 'sgi', 'SEGI_10112' => 'sgi', 'SEGI_15835' => 'sgi', 'SEGI_30386' => 'sgi', 'SEGI_34122' => 'sgi', 'SEGI_35063' => 'sgi', 'SGA_v2.0_scaffold101G29794' => 'sas', 'SGA_v2.0_scaffold1G00573' => 'sas', 'SGA_v2.0_scaffold79G25637' => 'sas', 'SGA_v2.0_scaffold88G27283' => 'sas', 'SGA_v2.0_scaffold88G27285' => 'sas', 'SGA_v2.0_scaffold88G27331' => 'sas', 'SHI09937' => 'shi', 'SMO119G0302' => 'smo', 'SMO137G0231' => 'smo', 'SMO367G1151' => 'smo', 'Solyc02g082000.3' => 'sly', 'Solyc06g031670.3' => 'sly', 'Solyc06g053810.3' => 'sly', 'Solyc07g025457.1' => 'sly', 'Solyc08g059740.1' => 'sly', 'Solyc08g059750.3' => 'sly', 'Solyc09g083370.3' => 'sly', 'Solyc12g038950.3' => 'sly', 'Sopen02g026630' => 'spe', 'Sopen06g018930' => 'spe', 'Sopen06g018940' => 'spe', 'Sopen08g009460' => 'spe', 'Sopen09g032290' => 'spe', 'Sp1g03080' => 'spa', 'Sp1g03090' => 'spa', 'Sp1g05480' => 'spa', 'Sp2g07860' => 'spa', 'Sp2g08430' => 'spa', 'Sp2g08440' => 'spa', 'Sp2g26200' => 'spa', 'Sp4g13170' => 'spa', 'Sp6g33840' => 'spa', 'SpUn1204_0010' => 'spa', 'TAR365G0908' => 'tar', 'TAR381G1270' => 'tar', 'TAR381G1651' => 'tar', 'TAR625G1131' => 'tar', 'TAR633G0962' => 'tar', 'TAR633G1729' => 'tar', 'TAR633G1864' => 'tar', 'TAR636G0221' => 'tar', 'TAR636G0314' => 'tar', 'TAR636G3202' => 'tar', 'THA.LOC104800805' => 'tha', 'THA.LOC104801096' => 'tha', 'THA.LOC104801555' => 'tha', 'THA.LOC104808491' => 'tha', 'THA.LOC104808595' => 'tha', 'THA.LOC104815985' => 'tha', 'THA.LOC104822250' => 'tha', 'THA.LOC104826071' => 'tha', 'Thecc.01G265200' => 'tca', 'Thecc.01G265300' => 'tca', 'Thecc.01G265700' => 'tca', 'Thecc.03G109100' => 'tca', 'Thecc.04G245900' => 'tca', 'Thecc.04G246000' => 'tca', 'Thhalv10003334m.g' => 'esa', 'Thhalv10005508m.g' => 'esa', 'Thhalv10005643m.g' => 'esa', 'Thhalv10007316m.g' => 'esa', 'Thhalv10009006m.g' => 'esa', 'Thhalv10009309m.g' => 'esa', 'Thhalv10014917m.g' => 'esa', 'Thhalv10014919m.g' => 'esa', 'Thhalv10015393m.g' => 'esa', 'Thhalv10016515m.g' => 'esa', 'Thhalv10029242m.g' => 'esa', 'TPR.G16654' => 'tpr', 'TPR.G20589' => 'tpr', 'TPR.G23029' => 'tpr', 'TPR.G27731' => 'tpr', 'TPR.G28889' => 'tpr', 'TPR.G28899' => 'tpr', 'TPR.G30846' => 'tpr', 'TPR.G5452' => 'tpr', 'TPR.G5713' => 'tpr', 'TPR.G9046' => 'tpr', 'TPR.G9061' => 'tpr', 'TWI09G1075' => 'twi', 'TWI12G0806' => 'twi', 'TWI18G0108' => 'twi', 'TWI53G1361' => 'twi', 'TWI73G0185' => 'twi', 'TWI73G0427' => 'twi', 'unitig_37.g12001' => 'ugi', 'unitig_747.g21660' => 'ugi', 'unitig_748.g7232' => 'ugi', 'unitig_748.g7315' => 'ugi', 'unitig_85.g27262' => 'ugi', 'unitig_92.g28220' => 'ugi', 'vmacro02632' => 'vma', 'vmacro08410' => 'vma', 'vmacro08411' => 'vma', 'vmacro15407' => 'vma', 'VMungo0251G3619' => 'vmu', 'VMungo0720G1204' => 'vmu', 'VMungo0720G1918' => 'vmu', 'VMungo0720G2387' => 'vmu', 'VMungo0720G2961' => 'vmu', 'VMungo1215G2154' => 'vmu', 'VMungo1383G2411' => 'vmu', 'Zm00001eb051130' => 'zma', 'Zm00001eb116830' => 'zma', 'Zm00001eb116850' => 'zma', 'Zm00001eb151740' => 'zma', 'Zm00001eb292360' => 'zma', 'Zm00001eb301640' => 'zma' ), 'gf_id' => 'HOM05D000856', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000856' ), 'data_identifier' => 'HOM05D000856', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000856', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p00010' => 'bna', 'A03p04160' => 'bna', 'A03p17160' => 'bna', 'A04p23370' => 'bna', 'A05p14860' => 'bna', 'A08p37020' => 'bna', 'A09p08050' => 'bna', 'A09p66800' => 'bna', 'A09p67940' => 'bna', 'A10p02680' => 'bna', 'A10p05320' => 'bna', 'Aa31LG1G20560' => 'aar', 'Aa31LG1G20610' => 'aar', 'Aa31LG1G7810' => 'aar', 'Aa31LG5G3590' => 'aar', 'Aa31LG5G6140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3819' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4683' => 'aag', 'Actinidia04480' => 'ach', 'Actinidia05466' => 'ach', 'Actinidia08445' => 'ach', 'Actinidia21170' => 'ach', 'Actinidia24812' => 'ach', 'Actinidia24951' => 'ach', 'Actinidia40088' => 'ach', 'Ah.02g111660' => 'amhyb', 'Ah.11g048900' => 'amhyb', 'Ah.11g049910' => 'amhyb', 'AL1G13870' => 'aly', 'AL1G13880' => 'aly', 'AL1G16760' => 'aly', 'AL390U10020' => 'aly', 'AL4G25520' => 'aly', 'AL6G19890' => 'aly', 'AL6G19900' => 'aly', 'AL6G19910' => 'aly', 'AL8G40100' => 'aly', 'Aqoxy2G03562' => 'aox', 'Aqoxy5G00316' => 'aox', 'Aqoxy5G00926' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1628KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1H403S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2FU6SJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.882I6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8YRY2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YN1SN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AF70II' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZA8L1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F916KL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHRD8H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KTZ8QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S22EMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8M29T' => 'arhy', 'AT1G04270' => 'ath', 'AT1G04280' => 'ath', 'AT1G06750' => 'ath', 'AT1G33850' => 'ath', 'AT2G30630' => 'ath', 'AT5G09490' => 'ath', 'AT5G09500' => 'ath', 'AT5G09510' => 'ath', 'AT5G43640' => 'ath', 'AT5G63070' => 'ath', 'ATR0605G315' => 'atr', 'Atru.chr11.175' => 'acertr', 'Atru.chr11.653' => 'acertr', 'Atru.chr3.1616' => 'acertr', 'Atru.chr4.2230' => 'acertr', 'Atru.chr4.2232' => 'acertr', 'Atru.chr5.1598' => 'acertr', 'Atru.chr5.1600' => 'acertr', 'Atru.chr5.2188' => 'acertr', 'AUR62008326' => 'cqu', 'AUR62011922' => 'cqu', 'AUR62011924' => 'cqu', 'AUR62021771' => 'cqu', 'AUR62032237' => 'cqu', 'AUR62032240' => 'cqu', 'BcaB01g05572' => 'bca', 'BcaB02g10337' => 'bca', 'BcaB04g19944' => 'bca', 'BcaB05g21548' => 'bca', 'BcaB05g21549' => 'bca', 'BcaB05g23227' => 'bca', 'BcaB06g26256' => 'bca', 'BcaB06g26257' => 'bca', 'BcaB06g28379' => 'bca', 'BcaC02g11159' => 'bca', 'BcaC03g13258' => 'bca', 'BcaC03g13259' => 'bca', 'BcaC05g24456' => 'bca', 'BcaC05g24457' => 'bca', 'BcaC07g36922' => 'bca', 'BcaC07g36923' => 'bca', 'BcaC07g42050' => 'bca', 'BcaC07g42176' => 'bca', 'BcaC07g42195' => 'bca', 'BcaC07g42196' => 'bca', 'BcaNung06674' => 'bca', 'BolC2t06351H' => 'bol', 'BolC2t06352H' => 'bol', 'BolC3t12993H' => 'bol', 'BolC4t23525H' => 'bol', 'BolC4t27475H' => 'bol', 'BolC5t29025H' => 'bol', 'BolC5t29026H' => 'bol', 'BolC8t46898H' => 'bol', 'BolC8t46899H' => 'bol', 'BolC8t52630H' => 'bol', 'BolC8t52765H' => 'bol', 'BolC9t53824H' => 'bol', 'BraA03t09760Z' => 'bra', 'BraA03t10990Z' => 'bra', 'BraA05t20413Z' => 'bra', 'BraA08t35602Z' => 'bra', 'BraA09t36458Z' => 'bra', 'BraA09t42018Z' => 'bra', 'BraA09t42129Z' => 'bra', 'BraA10t42536Z' => 'bra', 'BraA10t42537Z' => 'bra', 'C01p10690' => 'bna', 'C02p03890' => 'bna', 'C02p03900' => 'bna', 'C03p04620' => 'bna', 'C04p19870' => 'bna', 'C04p59670' => 'bna', 'C05p02460' => 'bna', 'C05p02470' => 'bna', 'C08p00980' => 'bna', 'C08p00990' => 'bna', 'C08p51030' => 'bna', 'C08p52360' => 'bna', 'C09p09120' => 'bna', 'CAN.G19.15' => 'can', 'CAN.G251.10' => 'can', 'CAN.G251.9' => 'can', 'CAN.G398.24' => 'can', 'CAN.G410.32' => 'can', 'CAN.G881.2' => 'can', 'CANSAT01G3025' => 'cansat', 'CANSAT78G1211' => 'cansat', 'CANSAT78G1218' => 'cansat', 'CANSAT78G1521' => 'cansat', 'CANSAT78G1670' => 'cansat', 'CARHR003600' => 'chi', 'CARHR003610' => 'chi', 'CARHR006290' => 'chi', 'CARHR006430' => 'chi', 'CARHR124110' => 'chi', 'CARHR203870' => 'chi', 'CARHR203880' => 'chi', 'CARHR203890' => 'chi', 'CARHR276880' => 'chi', 'Carub.0001s0346' => 'cru', 'Carub.0001s0347' => 'cru', 'Carub.0001s0607' => 'cru', 'Carub.0003s2768' => 'cru', 'Carub.0003s2769' => 'cru', 'Carub.0004s1178' => 'cru', 'Carub.0006s0806' => 'cru', 'Carub.0006s0807' => 'cru', 'Carub.0006s0808' => 'cru', 'Carub.0008s0501' => 'cru', 'Carub.0008s2379' => 'cru', 'Ca_08655_v3' => 'car', 'Ca_08922_v3' => 'car', 'Ca_08923_v3' => 'car', 'Ca_09119_v3' => 'car', 'Ca_09703_v3' => 'car', 'Ca_09705_v3' => 'car', 'Ca_09835_v3' => 'car', 'Ca_26403_v3' => 'car', 'Ca_30719_v3' => 'car', 'CBR_g17958' => 'cbr', 'CBR_g40516' => 'cbr', 'Cc00_g05350' => 'ccan', 'Cc01_g18690' => 'ccan', 'Cc03_g04830' => 'ccan', 'Cc03_g04850' => 'ccan', 'CDE02G4469' => 'cde', 'CDE06G0883' => 'cde', 'CDE06G1295' => 'cde', 'CDE06G1390' => 'cde', 'CDE07G0584' => 'cde', 'CDE07G1084' => 'cde', 'CDE08G1259' => 'cde', 'Cfa002341' => 'cfa', 'Cfa024337' => 'cfa', 'Ciclev10004749m.g' => 'ccl', 'Ciclev10006127m.g' => 'ccl', 'Ciclev10019720m.g' => 'ccl', 'Ciclev10022652m.g' => 'ccl', 'CiPaw.01G190400' => 'cil', 'CiPaw.01G190500' => 'cil', 'CiPaw.02G116400' => 'cil', 'CiPaw.02G116500' => 'cil', 'CiPaw.04G183000' => 'cil', 'CiPaw.04G183300' => 'cil', 'ClCG05G004610' => 'cla', 'ClCG05G004620' => 'cla', 'ClCG06G006730' => 'cla', 'ClCG06G006740' => 'cla', 'ClCG11G003690' => 'cla', 'COL.COLO4_08276' => 'col', 'COL.COLO4_08277' => 'col', 'COL.COLO4_15787' => 'col', 'COL.COLO4_15789' => 'col', 'Cpa.g.c44815' => 'cpa', 'Cpa.g.sc52.144' => 'cpa', 'Cpa.g.sc58.46' => 'cpa', 'Cpa.g.sc58.47' => 'cpa', 'Cre08.g360900' => 'cre', 'CsaV3_2G013030' => 'csa', 'CsaV3_2G013050' => 'csa', 'CsaV3_2G015620' => 'csa', 'CsaV3_3G012590' => 'csa', 'CsaV3_3G012600' => 'csa', 'CSS0001641' => 'camsi', 'CSS0008310' => 'camsi', 'CSS0013011' => 'camsi', 'CSS0017147' => 'camsi', 'CSS0022970' => 'camsi', 'CSS0025655' => 'camsi', 'CSS0028665' => 'camsi', 'CSS0029117' => 'camsi', 'CSS0032024' => 'camsi', 'CSS0039681' => 'camsi', 'CSS0046516' => 'camsi', 'CSS0050307' => 'camsi', 'DCAR_005871' => 'dca', 'DCAR_007342' => 'dca', 'DCAR_024228' => 'dca', 'DCAR_027277' => 'dca', 'DCAR_030718' => 'dca', 'Dinv20287' => 'din', 'Dinv22461' => 'din', 'Dinv22464' => 'din', 'Dinv29912' => 'din', 'Dinv29913' => 'din', 'Dinv34580' => 'din', 'Dinv34582' => 'din', 'Dinv44632' => 'din', 'Duzib052G0266' => 'dzi', 'Duzib133G0907' => 'dzi', 'Duzib133G1034' => 'dzi', 'Duzib138G0207' => 'dzi', 'Duzib138G0491' => 'dzi', 'Duzib151G0812' => 'dzi', 'Duzib151G1166' => 'dzi', 'Duzib168G0192' => 'dzi', 'Duzib211G0077' => 'dzi', 'Duzib212G0429' => 'dzi', 'Duzib212G0472' => 'dzi', 'ECA233G2617' => 'eca', 'ECA236G4188' => 'eca', 'ECA240G0936' => 'eca', 'ECA240G1129' => 'eca', 'ECA247G0623' => 'eca', 'EL10Ac5g10451' => 'bvu', 'EL10Ac5g10453' => 'bvu', 'EL10Ac5g10894' => 'bvu', 'Eucgr.H00192' => 'egr', 'Eucgr.H00193' => 'egr', 'Eucgr.H00194' => 'egr', 'Eucgr.J01562' => 'egr', 'Eucgr.K03301' => 'egr', 'FAN02G0632' => 'fan', 'FAN05G5378' => 'fan', 'FAN09G3247' => 'fan', 'FAN12G0435' => 'fan', 'FAN12G2426' => 'fan', 'FAN14G1707' => 'fan', 'FAN14G4725' => 'fan', 'FAN15G2071' => 'fan', 'FAN17G3065' => 'fan', 'FAN19G1376' => 'fan', 'FAN20G0354' => 'fan', 'FAN20G2429' => 'fan', 'FAN20G2658' => 'fan', 'FAN24G2343' => 'fan', 'FAN27G2362' => 'fan', 'FAN28G1765' => 'fan', 'FvH4_1g16020' => 'fve', 'FvH4_2g04890' => 'fve', 'FvH4_2g22270' => 'fve', 'FvH4_4g02630' => 'fve', 'FvH4_4g02640' => 'fve', 'FvH4_6g02650' => 'fve', 'Glyma.02G140600' => 'gma', 'Glyma.03G159900' => 'gma', 'Glyma.05G234800' => 'gma', 'Glyma.07G269600' => 'gma', 'Glyma.08G042300' => 'gma', 'Glyma.10G033500' => 'gma', 'Glyma.10G185200' => 'gma', 'Glyma.17G004300' => 'gma', 'Glyma.19G161900' => 'gma', 'Glyma.20G205100' => 'gma', 'Glyma.20G205200' => 'gma', 'Gohir.A01G139101' => 'ghi', 'Gohir.A02G035600' => 'ghi', 'Gohir.A02G117901' => 'ghi', 'Gohir.A07G210100' => 'ghi', 'Gohir.A07G210200' => 'ghi', 'Gohir.A08G061100' => 'ghi', 'Gohir.A09G223000' => 'ghi', 'Gohir.A09G223100' => 'ghi', 'Gohir.A10G113900' => 'ghi', 'Gohir.A10G114000' => 'ghi', 'Gohir.D02G042300' => 'ghi', 'Gohir.D07G216100' => 'ghi', 'Gohir.D07G216200' => 'ghi', 'Gohir.D08G070400' => 'ghi', 'Gohir.D09G225000' => 'ghi', 'Gohir.D09G225100' => 'ghi', 'Gohir.D10G152300' => 'ghi', 'Gohir.D10G153200' => 'ghi', 'Gohir.D11G133701' => 'ghi', 'Gorai.004G074100' => 'gra', 'Gorai.005G046800' => 'gra', 'Gorai.006G246500' => 'gra', 'Gorai.006G246600' => 'gra', 'Gorai.007G142900' => 'gra', 'Gorai.011G171000' => 'gra', 'Gorai.011G171100' => 'gra', 'Gorai.013G104300' => 'gra', 'Gorai.013G104400' => 'gra', 'GSVIVG01000754001' => 'vvi', 'GSVIVG01000756001' => 'vvi', 'GSVIVG01010903001' => 'vvi', 'GSVIVG01017623001' => 'vvi', 'GSVIVG01018113001' => 'vvi', 'GSVIVG01018116001' => 'vvi', 'GSVIVG01018118001' => 'vvi', 'HanXRQChr03g0076211' => 'han', 'HanXRQChr03g0092431' => 'han', 'HanXRQChr03g0092441' => 'han', 'HanXRQChr03g0092591' => 'han', 'HanXRQChr03g0092671' => 'han', 'HanXRQChr03g0092681' => 'han', 'HanXRQChr03g0092691' => 'han', 'HanXRQChr03g0092701' => 'han', 'HanXRQChr03g0092721' => 'han', 'HanXRQChr03g0092731' => 'han', 'HanXRQChr04g0113681' => 'han', 'HanXRQChr10g0281371' => 'han', 'HanXRQChr11g0337141' => 'han', 'HanXRQChr13g0424521' => 'han', 'HanXRQChr13g0424531' => 'han', 'HanXRQChr13g0424541' => 'han', 'HanXRQChr16g0498221' => 'han', 'Haze_04377' => 'cav', 'Haze_11298' => 'cav', 'Haze_24547' => 'cav', 'Haze_24550' => 'cav', 'Haze_26587' => 'cav', 'Hma1.2p1_0650F.1_g195410' => 'hma', 'Hma1.2p1_0893F.1_g233470' => 'hma', 'HPP92_006508' => 'vpl', 'HPP92_024780' => 'vpl', 'Hund02688' => 'sun', 'Hund09380' => 'sun', 'Hund09381' => 'sun', 'Hund09832' => 'sun', 'Hund09833' => 'sun', 'Hund11351' => 'sun', 'Hund11513' => 'sun', 'Lalb_Chr06g0162591' => 'lal', 'Lalb_Chr06g0162601' => 'lal', 'Lalb_Chr06g0169321' => 'lal', 'Lalb_Chr09g0330951' => 'lal', 'Lalb_Chr16g0387631' => 'lal', 'Lalb_Chr21g0306241' => 'lal', 'Lalb_Chr25g0290051' => 'lal', 'Lalb_Chr25g0290061' => 'lal', 'Lalb_Chr25g0290071' => 'lal', 'Lj1g0003876' => 'lja', 'Lj1P1207T36' => 'lonja', 'Lj2C1156G12' => 'lonja', 'Lj3A793G39' => 'lonja', 'Lj3C580G2' => 'lonja', 'Lj3C780G2' => 'lonja', 'Lj3C780T4' => 'lonja', 'Lj3C793G9' => 'lonja', 'Lj4g0012960' => 'lja', 'Lj5g0021252' => 'lja', 'Lj5g0021484' => 'lja', 'Lj5g0024528' => 'lja', 'Lj6A399T12' => 'lonja', 'Lj6A656G65' => 'lonja', 'Lsat_1_v5_gn_3_125500' => 'lsa', 'Lsat_1_v5_gn_3_125540' => 'lsa', 'Lsat_1_v5_gn_5_72701' => 'lsa', 'Lsat_1_v5_gn_8_91560' => 'lsa', 'Lsat_1_v5_gn_9_9640' => 'lsa', 'Manes.01G200600' => 'mes', 'Manes.01G200700' => 'mes', 'Manes.03G168900' => 'mes', 'Manes.03G169000' => 'mes', 'Manes.05G085801' => 'mes', 'Manes.05G086200' => 'mes', 'Manes.15G036700' => 'mes', 'Manes.15G036900' => 'mes', 'Mapoly0004s0172' => 'mpo', 'Mapoly0023s0001' => 'mpo', 'Mapoly0142s0012' => 'mpo', 'MBI01_g32854_MAGBIO' => 'mbi', 'MBI11_g24427_MAGBIO' => 'mbi', 'MBI11_g47319_MAGBIO' => 'mbi', 'MCO01G433' => 'mco', 'MD00G1187800' => 'mdo', 'MD04G1226500' => 'mdo', 'MD05G1203900' => 'mdo', 'MD10G1191100' => 'mdo', 'MD12G1243500' => 'mdo', 'MD13G1207000' => 'mdo', 'MD13G1207100' => 'mdo', 'MD16G1208600' => 'mdo', 'Medtr1g050352' => 'mtr', 'Medtr1g070385' => 'mtr', 'Medtr1g070450' => 'mtr', 'Medtr1g075200' => 'mtr', 'Medtr1g075250' => 'mtr', 'Medtr1g075260' => 'mtr', 'Medtr1g475250' => 'mtr', 'Medtr4g075450' => 'mtr', 'Medtr7g096300' => 'mtr', 'Medtr8g105110' => 'mtr', 'MELO3C006470.2' => 'cme', 'MELO3C006471.2' => 'cme', 'MELO3C020772.2' => 'cme', 'MELO3C026780.2' => 'cme', 'MELO3C026781.2' => 'cme', 'Migut.D00390' => 'egut', 'Migut.G00435' => 'egut', 'Migut.G00436' => 'egut', 'Migut.G00718' => 'egut', 'MSTRG.21891' => 'ama', 'MSTRG.26910' => 'ama', 'MSTRG.4099' => 'ama', 'MSTRG.9925' => 'ama', 'Nitab4.5_0000165g0010' => 'nta', 'Nitab4.5_0000209g0180' => 'nta', 'Nitab4.5_0000244g0440' => 'nta', 'Nitab4.5_0000525g0220' => 'nta', 'Nitab4.5_0001597g0020' => 'nta', 'Nitab4.5_0001878g0040' => 'nta', 'Nitab4.5_0001878g0060' => 'nta', 'Nitab4.5_0002838g0100' => 'nta', 'Nitab4.5_0002838g0120' => 'nta', 'Nitab4.5_0004798g0030' => 'nta', 'Nitab4.5_0005420g0010' => 'nta', 'Nitab4.5_0005507g0010' => 'nta', 'Nitab4.5_0005574g0020' => 'nta', 'Nitab4.5_0005838g0010' => 'nta', 'Nitab4.5_0010580g0020' => 'nta', 'Nn1g02599' => 'nnu', 'Nn1g02608' => 'nnu', 'Nn3g17742' => 'nnu', 'Nn3g19534' => 'nnu', 'Nn3g19535' => 'nnu', 'Oeu008790.1' => 'oeu', 'Oeu008792.1' => 'oeu', 'Oeu032590.1' => 'oeu', 'Oeu035349.1' => 'oeu', 'Oeu049791.1' => 'oeu', 'Os01g0774500' => 'osa', 'Os03g0628800' => 'osa', 'Os03g0798600' => 'osa', 'Os05g0508800' => 'osa', 'Peaxi162Scf00036g02018' => 'pax', 'Peaxi162Scf00578g00032' => 'pax', 'Peaxi162Scf00578g00317' => 'pax', 'Peaxi162Scf00785g00114' => 'pax', 'Peaxi162Scf00813g00119' => 'pax', 'Peaxi162Scf00906g00227' => 'pax', 'PGR004G0875' => 'pgr', 'PGR004G2424' => 'pgr', 'PGR031G1239' => 'pgr', 'PGR031G2474' => 'pgr', 'PGR044G0423' => 'pgr', 'PGSC0003DMG400001128' => 'stu', 'PGSC0003DMG400007336' => 'stu', 'PGSC0003DMG400016318' => 'stu', 'PGSC0003DMG400016319' => 'stu', 'PGSC0003DMG400018074' => 'stu', 'Phvul.001G157700' => 'pvu', 'Phvul.002G148550' => 'pvu', 'Phvul.002G320200' => 'pvu', 'Phvul.003G089200' => 'pvu', 'Phvul.007G126000' => 'pvu', 'Phvul.007G126100' => 'pvu', 'Phvul.007G178000' => 'pvu', 'Phvul.007G178200' => 'pvu', 'Potri.002G043000' => 'ptr', 'Potri.002G043200' => 'ptr', 'Potri.003G123750' => 'ptr', 'Potri.005G055401' => 'ptr', 'Potri.005G219700' => 'ptr', 'Potri.005G220000' => 'ptr', 'Potri.008G161901' => 'ptr', 'Potri.008G162000' => 'ptr', 'Potri.008G162400' => 'ptr', 'Potri.010G076900' => 'ptr', 'Pp3c12_9180' => 'ppa', 'Pp3c13_19770' => 'ppa', 'Pp3c14_22950' => 'ppa', 'Pp3c16_12160' => 'ppa', 'Pp3c27_7820' => 'ppa', 'Pp3c2_3490' => 'ppa', 'Pp3c3_23700' => 'ppa', 'Pp3c3_36520' => 'ppa', 'Pp3c4_15250' => 'ppa', 'PRCOL_00007002' => 'pco', 'Prupe.1G030600' => 'ppe', 'Prupe.1G030700' => 'ppe', 'Prupe.6G345200' => 'ppe', 'Prupe.8G230300' => 'ppe', 'Prupe.8G230500' => 'ppe', 'Psat3g059600' => 'psa', 'Psat5g200920' => 'psa', 'Psat6g056440' => 'psa', 'Psat6g057360' => 'psa', 'Psat6g134120' => 'psa', 'Psat6g134160' => 'psa', 'Psat7g008640' => 'psa', 'Psat7g185240' => 'psa', 'PSO017G1330' => 'pso', 'PSO063G6097' => 'pso', 'PSO170G0835' => 'pso', 'PSO170G2499' => 'pso', 'PSO210G5058' => 'pso', 'PSO210G6154' => 'pso', 'PSO585G0031' => 'pso', 'PSO832G0264' => 'pso', 'PSO832G4288' => 'pso', 'QL03p027355' => 'qlo', 'QL03p027430' => 'qlo', 'QL04p081380' => 'qlo', 'QL06p015642' => 'qlo', 'QL06p015650' => 'qlo', 'QL06p015686' => 'qlo', 'QL12p042927' => 'qlo', 'QL93p1863_0035' => 'qlo', 'RcHm_v2.0_Chr3g0450581' => 'rch', 'RcHm_v2.0_Chr4g0390371' => 'rch', 'RcHm_v2.0_Chr4g0390381' => 'rch', 'RcHm_v2.0_Chr4g0390491' => 'rch', 'RcHm_v2.0_Chr4g0390501' => 'rch', 'RcHm_v2.0_Chr6g0289231' => 'rch', 'Rhsim04G0190400' => 'rsi', 'Rhsim04G0190500' => 'rsi', 'Rhsim04G0190600' => 'rsi', 'Rhsim13G0031400' => 'rsi', 'Rhsim13G0165600' => 'rsi', 'RhsimUnG0114600' => 'rsi', 'RhsimUnG0114700' => 'rsi', 'Sabra02G0034800' => 'sbr', 'Sabra02G0035100' => 'sbr', 'Sabra05G0168600' => 'sbr', 'Sabra05G0168800' => 'sbr', 'Sabra08G0123700' => 'sbr', 'Sabra10G0031900' => 'sbr', 'Sabra13G0039000' => 'sbr', 'SalBow2G0782' => 'sbo', 'SalBow2G1403' => 'sbo', 'SalBow4G0074' => 'sbo', 'SalBow4G2635' => 'sbo', 'SalBow5G3010' => 'sbo', 'Sc05g0000870' => 'sci', 'Sc05g0000890' => 'sci', 'Sc13g0005000' => 'sci', 'Sc13g0005030' => 'sci', 'Sc19g0003790' => 'sci', 'Sc19g0003800' => 'sci', 'Sed0003467' => 'sed', 'Sed0009355' => 'sed', 'Sed0009894' => 'sed', 'Sed0011972' => 'sed', 'Sed0021483' => 'sed', 'Sed0021750' => 'sed', 'Sed0026279' => 'sed', 'SEGI_05312' => 'sgi', 'SEGI_10112' => 'sgi', 'SEGI_15835' => 'sgi', 'SEGI_30386' => 'sgi', 'SEGI_34122' => 'sgi', 'SEGI_35063' => 'sgi', 'SGA_v2.0_scaffold101G29794' => 'sas', 'SGA_v2.0_scaffold1G00573' => 'sas', 'SGA_v2.0_scaffold79G25637' => 'sas', 'SGA_v2.0_scaffold88G27283' => 'sas', 'SGA_v2.0_scaffold88G27285' => 'sas', 'SGA_v2.0_scaffold88G27331' => 'sas', 'SHI09937' => 'shi', 'SMO119G0302' => 'smo', 'SMO137G0231' => 'smo', 'SMO367G1151' => 'smo', 'Solyc02g082000.3' => 'sly', 'Solyc06g031670.3' => 'sly', 'Solyc06g053810.3' => 'sly', 'Solyc07g025457.1' => 'sly', 'Solyc08g059740.1' => 'sly', 'Solyc08g059750.3' => 'sly', 'Solyc09g083370.3' => 'sly', 'Solyc12g038950.3' => 'sly', 'Sopen02g026630' => 'spe', 'Sopen06g018930' => 'spe', 'Sopen06g018940' => 'spe', 'Sopen08g009460' => 'spe', 'Sopen09g032290' => 'spe', 'Sp1g03080' => 'spa', 'Sp1g03090' => 'spa', 'Sp1g05480' => 'spa', 'Sp2g07860' => 'spa', 'Sp2g08430' => 'spa', 'Sp2g08440' => 'spa', 'Sp2g26200' => 'spa', 'Sp4g13170' => 'spa', 'Sp6g33840' => 'spa', 'SpUn1204_0010' => 'spa', 'TAR365G0908' => 'tar', 'TAR381G1270' => 'tar', 'TAR381G1651' => 'tar', 'TAR625G1131' => 'tar', 'TAR633G0962' => 'tar', 'TAR633G1729' => 'tar', 'TAR633G1864' => 'tar', 'TAR636G0221' => 'tar', 'TAR636G0314' => 'tar', 'TAR636G3202' => 'tar', 'THA.LOC104800805' => 'tha', 'THA.LOC104801096' => 'tha', 'THA.LOC104801555' => 'tha', 'THA.LOC104808491' => 'tha', 'THA.LOC104808595' => 'tha', 'THA.LOC104815985' => 'tha', 'THA.LOC104822250' => 'tha', 'THA.LOC104826071' => 'tha', 'Thecc.01G265200' => 'tca', 'Thecc.01G265300' => 'tca', 'Thecc.01G265700' => 'tca', 'Thecc.03G109100' => 'tca', 'Thecc.04G245900' => 'tca', 'Thecc.04G246000' => 'tca', 'Thhalv10003334m.g' => 'esa', 'Thhalv10005508m.g' => 'esa', 'Thhalv10005643m.g' => 'esa', 'Thhalv10007316m.g' => 'esa', 'Thhalv10009006m.g' => 'esa', 'Thhalv10009309m.g' => 'esa', 'Thhalv10014917m.g' => 'esa', 'Thhalv10014919m.g' => 'esa', 'Thhalv10015393m.g' => 'esa', 'Thhalv10016515m.g' => 'esa', 'Thhalv10029242m.g' => 'esa', 'TPR.G16654' => 'tpr', 'TPR.G20589' => 'tpr', 'TPR.G23029' => 'tpr', 'TPR.G27731' => 'tpr', 'TPR.G28889' => 'tpr', 'TPR.G28899' => 'tpr', 'TPR.G30846' => 'tpr', 'TPR.G5452' => 'tpr', 'TPR.G5713' => 'tpr', 'TPR.G9046' => 'tpr', 'TPR.G9061' => 'tpr', 'TWI09G1075' => 'twi', 'TWI12G0806' => 'twi', 'TWI18G0108' => 'twi', 'TWI53G1361' => 'twi', 'TWI73G0185' => 'twi', 'TWI73G0427' => 'twi', 'unitig_37.g12001' => 'ugi', 'unitig_747.g21660' => 'ugi', 'unitig_748.g7232' => 'ugi', 'unitig_748.g7315' => 'ugi', 'unitig_85.g27262' => 'ugi', 'unitig_92.g28220' => 'ugi', 'vmacro02632' => 'vma', 'vmacro08410' => 'vma', 'vmacro08411' => 'vma', 'vmacro15407' => 'vma', 'VMungo0251G3619' => 'vmu', 'VMungo0720G1204' => 'vmu', 'VMungo0720G1918' => 'vmu', 'VMungo0720G2387' => 'vmu', 'VMungo0720G2961' => 'vmu', 'VMungo1215G2154' => 'vmu', 'VMungo1383G2411' => 'vmu', 'Zm00001eb051130' => 'zma', 'Zm00001eb116830' => 'zma', 'Zm00001eb116850' => 'zma', 'Zm00001eb151740' => 'zma', 'Zm00001eb292360' => 'zma', 'Zm00001eb301640' => 'zma' ) $gf_id = 'HOM05D000856' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000856' ) $data_identifier = 'HOM05D000856' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 13, 'ath' => (int) 10, 'atr' => (int) 1, 'acertr' => (int) 8, 'cqu' => (int) 6, 'bca' => (int) 21, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 11, 'car' => (int) 9, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 8, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 5, 'fan' => (int) 16, 'fve' => (int) 6, 'gma' => (int) 11, 'ghi' => (int) 19, 'gra' => (int) 9, 'vvi' => (int) 7, 'han' => (int) 17, 'cav' => (int) 5, 'hma' => (int) 2, 'vpl' => (int) 2, 'sun' => (int) 7, 'lal' => (int) 9, 'lja' => (int) 5, 'lonja' => (int) 9, 'lsa' => (int) 5, 'mes' => (int) 8, 'mpo' => (int) 3, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 10, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 15, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 9, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 9, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 6, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 5, 'spa' => (int) 10, 'tar' => (int) 10, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 11, 'tpr' => (int) 11, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 4, 'vmu' => (int) 7, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb301640' $species_info = array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ) $local_species = 'arhy' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000856', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p00010' => 'bna', 'A03p04160' => 'bna', 'A03p17160' => 'bna', 'A04p23370' => 'bna', 'A05p14860' => 'bna', 'A08p37020' => 'bna', 'A09p08050' => 'bna', 'A09p66800' => 'bna', 'A09p67940' => 'bna', 'A10p02680' => 'bna', 'A10p05320' => 'bna', 'Aa31LG1G20560' => 'aar', 'Aa31LG1G20610' => 'aar', 'Aa31LG1G7810' => 'aar', 'Aa31LG5G3590' => 'aar', 'Aa31LG5G6140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3819' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4683' => 'aag', 'Actinidia04480' => 'ach', 'Actinidia05466' => 'ach', 'Actinidia08445' => 'ach', 'Actinidia21170' => 'ach', 'Actinidia24812' => 'ach', 'Actinidia24951' => 'ach', 'Actinidia40088' => 'ach', 'Ah.02g111660' => 'amhyb', 'Ah.11g048900' => 'amhyb', 'Ah.11g049910' => 'amhyb', 'AL1G13870' => 'aly', 'AL1G13880' => 'aly', 'AL1G16760' => 'aly', 'AL390U10020' => 'aly', 'AL4G25520' => 'aly', 'AL6G19890' => 'aly', 'AL6G19900' => 'aly', 'AL6G19910' => 'aly', 'AL8G40100' => 'aly', 'Aqoxy2G03562' => 'aox', 'Aqoxy5G00316' => 'aox', 'Aqoxy5G00926' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1628KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1H403S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2FU6SJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.882I6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8YRY2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YN1SN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AF70II' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZA8L1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F916KL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHRD8H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KTZ8QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S22EMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8M29T' => 'arhy', 'AT1G04270' => 'ath', 'AT1G04280' => 'ath', 'AT1G06750' => 'ath', 'AT1G33850' => 'ath', 'AT2G30630' => 'ath', 'AT5G09490' => 'ath', 'AT5G09500' => 'ath', 'AT5G09510' => 'ath', 'AT5G43640' => 'ath', 'AT5G63070' => 'ath', 'ATR0605G315' => 'atr', 'Atru.chr11.175' => 'acertr', 'Atru.chr11.653' => 'acertr', 'Atru.chr3.1616' => 'acertr', 'Atru.chr4.2230' => 'acertr', 'Atru.chr4.2232' => 'acertr', 'Atru.chr5.1598' => 'acertr', 'Atru.chr5.1600' => 'acertr', 'Atru.chr5.2188' => 'acertr', 'AUR62008326' => 'cqu', 'AUR62011922' => 'cqu', 'AUR62011924' => 'cqu', 'AUR62021771' => 'cqu', 'AUR62032237' => 'cqu', 'AUR62032240' => 'cqu', 'BcaB01g05572' => 'bca', 'BcaB02g10337' => 'bca', 'BcaB04g19944' => 'bca', 'BcaB05g21548' => 'bca', 'BcaB05g21549' => 'bca', 'BcaB05g23227' => 'bca', 'BcaB06g26256' => 'bca', 'BcaB06g26257' => 'bca', 'BcaB06g28379' => 'bca', 'BcaC02g11159' => 'bca', 'BcaC03g13258' => 'bca', 'BcaC03g13259' => 'bca', 'BcaC05g24456' => 'bca', 'BcaC05g24457' => 'bca', 'BcaC07g36922' => 'bca', 'BcaC07g36923' => 'bca', 'BcaC07g42050' => 'bca', 'BcaC07g42176' => 'bca', 'BcaC07g42195' => 'bca', 'BcaC07g42196' => 'bca', 'BcaNung06674' => 'bca', 'BolC2t06351H' => 'bol', 'BolC2t06352H' => 'bol', 'BolC3t12993H' => 'bol', 'BolC4t23525H' => 'bol', 'BolC4t27475H' => 'bol', 'BolC5t29025H' => 'bol', 'BolC5t29026H' => 'bol', 'BolC8t46898H' => 'bol', 'BolC8t46899H' => 'bol', 'BolC8t52630H' => 'bol', 'BolC8t52765H' => 'bol', 'BolC9t53824H' => 'bol', 'BraA03t09760Z' => 'bra', 'BraA03t10990Z' => 'bra', 'BraA05t20413Z' => 'bra', 'BraA08t35602Z' => 'bra', 'BraA09t36458Z' => 'bra', 'BraA09t42018Z' => 'bra', 'BraA09t42129Z' => 'bra', 'BraA10t42536Z' => 'bra', 'BraA10t42537Z' => 'bra', 'C01p10690' => 'bna', 'C02p03890' => 'bna', 'C02p03900' => 'bna', 'C03p04620' => 'bna', 'C04p19870' => 'bna', 'C04p59670' => 'bna', 'C05p02460' => 'bna', 'C05p02470' => 'bna', 'C08p00980' => 'bna', 'C08p00990' => 'bna', 'C08p51030' => 'bna', 'C08p52360' => 'bna', 'C09p09120' => 'bna', 'CAN.G19.15' => 'can', 'CAN.G251.10' => 'can', 'CAN.G251.9' => 'can', 'CAN.G398.24' => 'can', 'CAN.G410.32' => 'can', 'CAN.G881.2' => 'can', 'CANSAT01G3025' => 'cansat', 'CANSAT78G1211' => 'cansat', 'CANSAT78G1218' => 'cansat', 'CANSAT78G1521' => 'cansat', 'CANSAT78G1670' => 'cansat', 'CARHR003600' => 'chi', 'CARHR003610' => 'chi', 'CARHR006290' => 'chi', 'CARHR006430' => 'chi', 'CARHR124110' => 'chi', 'CARHR203870' => 'chi', 'CARHR203880' => 'chi', 'CARHR203890' => 'chi', 'CARHR276880' => 'chi', 'Carub.0001s0346' => 'cru', 'Carub.0001s0347' => 'cru', 'Carub.0001s0607' => 'cru', 'Carub.0003s2768' => 'cru', 'Carub.0003s2769' => 'cru', 'Carub.0004s1178' => 'cru', 'Carub.0006s0806' => 'cru', 'Carub.0006s0807' => 'cru', 'Carub.0006s0808' => 'cru', 'Carub.0008s0501' => 'cru', 'Carub.0008s2379' => 'cru', 'Ca_08655_v3' => 'car', 'Ca_08922_v3' => 'car', 'Ca_08923_v3' => 'car', 'Ca_09119_v3' => 'car', 'Ca_09703_v3' => 'car', 'Ca_09705_v3' => 'car', 'Ca_09835_v3' => 'car', 'Ca_26403_v3' => 'car', 'Ca_30719_v3' => 'car', 'CBR_g17958' => 'cbr', 'CBR_g40516' => 'cbr', 'Cc00_g05350' => 'ccan', 'Cc01_g18690' => 'ccan', 'Cc03_g04830' => 'ccan', 'Cc03_g04850' => 'ccan', 'CDE02G4469' => 'cde', 'CDE06G0883' => 'cde', 'CDE06G1295' => 'cde', 'CDE06G1390' => 'cde', 'CDE07G0584' => 'cde', 'CDE07G1084' => 'cde', 'CDE08G1259' => 'cde', 'Cfa002341' => 'cfa', 'Cfa024337' => 'cfa', 'Ciclev10004749m.g' => 'ccl', 'Ciclev10006127m.g' => 'ccl', 'Ciclev10019720m.g' => 'ccl', 'Ciclev10022652m.g' => 'ccl', 'CiPaw.01G190400' => 'cil', 'CiPaw.01G190500' => 'cil', 'CiPaw.02G116400' => 'cil', 'CiPaw.02G116500' => 'cil', 'CiPaw.04G183000' => 'cil', 'CiPaw.04G183300' => 'cil', 'ClCG05G004610' => 'cla', 'ClCG05G004620' => 'cla', 'ClCG06G006730' => 'cla', 'ClCG06G006740' => 'cla', 'ClCG11G003690' => 'cla', 'COL.COLO4_08276' => 'col', 'COL.COLO4_08277' => 'col', 'COL.COLO4_15787' => 'col', 'COL.COLO4_15789' => 'col', 'Cpa.g.c44815' => 'cpa', 'Cpa.g.sc52.144' => 'cpa', 'Cpa.g.sc58.46' => 'cpa', 'Cpa.g.sc58.47' => 'cpa', 'Cre08.g360900' => 'cre', 'CsaV3_2G013030' => 'csa', 'CsaV3_2G013050' => 'csa', 'CsaV3_2G015620' => 'csa', 'CsaV3_3G012590' => 'csa', 'CsaV3_3G012600' => 'csa', 'CSS0001641' => 'camsi', 'CSS0008310' => 'camsi', 'CSS0013011' => 'camsi', 'CSS0017147' => 'camsi', 'CSS0022970' => 'camsi', 'CSS0025655' => 'camsi', 'CSS0028665' => 'camsi', 'CSS0029117' => 'camsi', 'CSS0032024' => 'camsi', 'CSS0039681' => 'camsi', 'CSS0046516' => 'camsi', 'CSS0050307' => 'camsi', 'DCAR_005871' => 'dca', 'DCAR_007342' => 'dca', 'DCAR_024228' => 'dca', 'DCAR_027277' => 'dca', 'DCAR_030718' => 'dca', 'Dinv20287' => 'din', 'Dinv22461' => 'din', 'Dinv22464' => 'din', 'Dinv29912' => 'din', 'Dinv29913' => 'din', 'Dinv34580' => 'din', 'Dinv34582' => 'din', 'Dinv44632' => 'din', 'Duzib052G0266' => 'dzi', 'Duzib133G0907' => 'dzi', 'Duzib133G1034' => 'dzi', 'Duzib138G0207' => 'dzi', 'Duzib138G0491' => 'dzi', 'Duzib151G0812' => 'dzi', 'Duzib151G1166' => 'dzi', 'Duzib168G0192' => 'dzi', 'Duzib211G0077' => 'dzi', 'Duzib212G0429' => 'dzi', 'Duzib212G0472' => 'dzi', 'ECA233G2617' => 'eca', 'ECA236G4188' => 'eca', 'ECA240G0936' => 'eca', 'ECA240G1129' => 'eca', 'ECA247G0623' => 'eca', 'EL10Ac5g10451' => 'bvu', 'EL10Ac5g10453' => 'bvu', 'EL10Ac5g10894' => 'bvu', 'Eucgr.H00192' => 'egr', 'Eucgr.H00193' => 'egr', 'Eucgr.H00194' => 'egr', 'Eucgr.J01562' => 'egr', 'Eucgr.K03301' => 'egr', 'FAN02G0632' => 'fan', 'FAN05G5378' => 'fan', 'FAN09G3247' => 'fan', 'FAN12G0435' => 'fan', 'FAN12G2426' => 'fan', 'FAN14G1707' => 'fan', 'FAN14G4725' => 'fan', 'FAN15G2071' => 'fan', 'FAN17G3065' => 'fan', 'FAN19G1376' => 'fan', 'FAN20G0354' => 'fan', 'FAN20G2429' => 'fan', 'FAN20G2658' => 'fan', 'FAN24G2343' => 'fan', 'FAN27G2362' => 'fan', 'FAN28G1765' => 'fan', 'FvH4_1g16020' => 'fve', 'FvH4_2g04890' => 'fve', 'FvH4_2g22270' => 'fve', 'FvH4_4g02630' => 'fve', 'FvH4_4g02640' => 'fve', 'FvH4_6g02650' => 'fve', 'Glyma.02G140600' => 'gma', 'Glyma.03G159900' => 'gma', 'Glyma.05G234800' => 'gma', 'Glyma.07G269600' => 'gma', 'Glyma.08G042300' => 'gma', 'Glyma.10G033500' => 'gma', 'Glyma.10G185200' => 'gma', 'Glyma.17G004300' => 'gma', 'Glyma.19G161900' => 'gma', 'Glyma.20G205100' => 'gma', 'Glyma.20G205200' => 'gma', 'Gohir.A01G139101' => 'ghi', 'Gohir.A02G035600' => 'ghi', 'Gohir.A02G117901' => 'ghi', 'Gohir.A07G210100' => 'ghi', 'Gohir.A07G210200' => 'ghi', 'Gohir.A08G061100' => 'ghi', 'Gohir.A09G223000' => 'ghi', 'Gohir.A09G223100' => 'ghi', 'Gohir.A10G113900' => 'ghi', 'Gohir.A10G114000' => 'ghi', 'Gohir.D02G042300' => 'ghi', 'Gohir.D07G216100' => 'ghi', 'Gohir.D07G216200' => 'ghi', 'Gohir.D08G070400' => 'ghi', 'Gohir.D09G225000' => 'ghi', 'Gohir.D09G225100' => 'ghi', 'Gohir.D10G152300' => 'ghi', 'Gohir.D10G153200' => 'ghi', 'Gohir.D11G133701' => 'ghi', 'Gorai.004G074100' => 'gra', 'Gorai.005G046800' => 'gra', 'Gorai.006G246500' => 'gra', 'Gorai.006G246600' => 'gra', 'Gorai.007G142900' => 'gra', 'Gorai.011G171000' => 'gra', 'Gorai.011G171100' => 'gra', 'Gorai.013G104300' => 'gra', 'Gorai.013G104400' => 'gra', 'GSVIVG01000754001' => 'vvi', 'GSVIVG01000756001' => 'vvi', 'GSVIVG01010903001' => 'vvi', 'GSVIVG01017623001' => 'vvi', 'GSVIVG01018113001' => 'vvi', 'GSVIVG01018116001' => 'vvi', 'GSVIVG01018118001' => 'vvi', 'HanXRQChr03g0076211' => 'han', 'HanXRQChr03g0092431' => 'han', 'HanXRQChr03g0092441' => 'han', 'HanXRQChr03g0092591' => 'han', 'HanXRQChr03g0092671' => 'han', 'HanXRQChr03g0092681' => 'han', 'HanXRQChr03g0092691' => 'han', 'HanXRQChr03g0092701' => 'han', 'HanXRQChr03g0092721' => 'han', 'HanXRQChr03g0092731' => 'han', 'HanXRQChr04g0113681' => 'han', 'HanXRQChr10g0281371' => 'han', 'HanXRQChr11g0337141' => 'han', 'HanXRQChr13g0424521' => 'han', 'HanXRQChr13g0424531' => 'han', 'HanXRQChr13g0424541' => 'han', 'HanXRQChr16g0498221' => 'han', 'Haze_04377' => 'cav', 'Haze_11298' => 'cav', 'Haze_24547' => 'cav', 'Haze_24550' => 'cav', 'Haze_26587' => 'cav', 'Hma1.2p1_0650F.1_g195410' => 'hma', 'Hma1.2p1_0893F.1_g233470' => 'hma', 'HPP92_006508' => 'vpl', 'HPP92_024780' => 'vpl', 'Hund02688' => 'sun', 'Hund09380' => 'sun', 'Hund09381' => 'sun', 'Hund09832' => 'sun', 'Hund09833' => 'sun', 'Hund11351' => 'sun', 'Hund11513' => 'sun', 'Lalb_Chr06g0162591' => 'lal', 'Lalb_Chr06g0162601' => 'lal', 'Lalb_Chr06g0169321' => 'lal', 'Lalb_Chr09g0330951' => 'lal', 'Lalb_Chr16g0387631' => 'lal', 'Lalb_Chr21g0306241' => 'lal', 'Lalb_Chr25g0290051' => 'lal', 'Lalb_Chr25g0290061' => 'lal', 'Lalb_Chr25g0290071' => 'lal', 'Lj1g0003876' => 'lja', 'Lj1P1207T36' => 'lonja', 'Lj2C1156G12' => 'lonja', 'Lj3A793G39' => 'lonja', 'Lj3C580G2' => 'lonja', 'Lj3C780G2' => 'lonja', 'Lj3C780T4' => 'lonja', 'Lj3C793G9' => 'lonja', 'Lj4g0012960' => 'lja', 'Lj5g0021252' => 'lja', 'Lj5g0021484' => 'lja', 'Lj5g0024528' => 'lja', 'Lj6A399T12' => 'lonja', 'Lj6A656G65' => 'lonja', 'Lsat_1_v5_gn_3_125500' => 'lsa', 'Lsat_1_v5_gn_3_125540' => 'lsa', 'Lsat_1_v5_gn_5_72701' => 'lsa', 'Lsat_1_v5_gn_8_91560' => 'lsa', 'Lsat_1_v5_gn_9_9640' => 'lsa', 'Manes.01G200600' => 'mes', 'Manes.01G200700' => 'mes', 'Manes.03G168900' => 'mes', 'Manes.03G169000' => 'mes', 'Manes.05G085801' => 'mes', 'Manes.05G086200' => 'mes', 'Manes.15G036700' => 'mes', 'Manes.15G036900' => 'mes', 'Mapoly0004s0172' => 'mpo', 'Mapoly0023s0001' => 'mpo', 'Mapoly0142s0012' => 'mpo', 'MBI01_g32854_MAGBIO' => 'mbi', 'MBI11_g24427_MAGBIO' => 'mbi', 'MBI11_g47319_MAGBIO' => 'mbi', 'MCO01G433' => 'mco', 'MD00G1187800' => 'mdo', 'MD04G1226500' => 'mdo', 'MD05G1203900' => 'mdo', 'MD10G1191100' => 'mdo', 'MD12G1243500' => 'mdo', 'MD13G1207000' => 'mdo', 'MD13G1207100' => 'mdo', 'MD16G1208600' => 'mdo', 'Medtr1g050352' => 'mtr', 'Medtr1g070385' => 'mtr', 'Medtr1g070450' => 'mtr', 'Medtr1g075200' => 'mtr', 'Medtr1g075250' => 'mtr', 'Medtr1g075260' => 'mtr', 'Medtr1g475250' => 'mtr', 'Medtr4g075450' => 'mtr', 'Medtr7g096300' => 'mtr', 'Medtr8g105110' => 'mtr', 'MELO3C006470.2' => 'cme', 'MELO3C006471.2' => 'cme', 'MELO3C020772.2' => 'cme', 'MELO3C026780.2' => 'cme', 'MELO3C026781.2' => 'cme', 'Migut.D00390' => 'egut', 'Migut.G00435' => 'egut', 'Migut.G00436' => 'egut', 'Migut.G00718' => 'egut', 'MSTRG.21891' => 'ama', 'MSTRG.26910' => 'ama', 'MSTRG.4099' => 'ama', 'MSTRG.9925' => 'ama', 'Nitab4.5_0000165g0010' => 'nta', 'Nitab4.5_0000209g0180' => 'nta', 'Nitab4.5_0000244g0440' => 'nta', 'Nitab4.5_0000525g0220' => 'nta', 'Nitab4.5_0001597g0020' => 'nta', 'Nitab4.5_0001878g0040' => 'nta', 'Nitab4.5_0001878g0060' => 'nta', 'Nitab4.5_0002838g0100' => 'nta', 'Nitab4.5_0002838g0120' => 'nta', 'Nitab4.5_0004798g0030' => 'nta', 'Nitab4.5_0005420g0010' => 'nta', 'Nitab4.5_0005507g0010' => 'nta', 'Nitab4.5_0005574g0020' => 'nta', 'Nitab4.5_0005838g0010' => 'nta', 'Nitab4.5_0010580g0020' => 'nta', 'Nn1g02599' => 'nnu', 'Nn1g02608' => 'nnu', 'Nn3g17742' => 'nnu', 'Nn3g19534' => 'nnu', 'Nn3g19535' => 'nnu', 'Oeu008790.1' => 'oeu', 'Oeu008792.1' => 'oeu', 'Oeu032590.1' => 'oeu', 'Oeu035349.1' => 'oeu', 'Oeu049791.1' => 'oeu', 'Os01g0774500' => 'osa', 'Os03g0628800' => 'osa', 'Os03g0798600' => 'osa', 'Os05g0508800' => 'osa', 'Peaxi162Scf00036g02018' => 'pax', 'Peaxi162Scf00578g00032' => 'pax', 'Peaxi162Scf00578g00317' => 'pax', 'Peaxi162Scf00785g00114' => 'pax', 'Peaxi162Scf00813g00119' => 'pax', 'Peaxi162Scf00906g00227' => 'pax', 'PGR004G0875' => 'pgr', 'PGR004G2424' => 'pgr', 'PGR031G1239' => 'pgr', 'PGR031G2474' => 'pgr', 'PGR044G0423' => 'pgr', 'PGSC0003DMG400001128' => 'stu', 'PGSC0003DMG400007336' => 'stu', 'PGSC0003DMG400016318' => 'stu', 'PGSC0003DMG400016319' => 'stu', 'PGSC0003DMG400018074' => 'stu', 'Phvul.001G157700' => 'pvu', 'Phvul.002G148550' => 'pvu', 'Phvul.002G320200' => 'pvu', 'Phvul.003G089200' => 'pvu', 'Phvul.007G126000' => 'pvu', 'Phvul.007G126100' => 'pvu', 'Phvul.007G178000' => 'pvu', 'Phvul.007G178200' => 'pvu', 'Potri.002G043000' => 'ptr', 'Potri.002G043200' => 'ptr', 'Potri.003G123750' => 'ptr', 'Potri.005G055401' => 'ptr', 'Potri.005G219700' => 'ptr', 'Potri.005G220000' => 'ptr', 'Potri.008G161901' => 'ptr', 'Potri.008G162000' => 'ptr', 'Potri.008G162400' => 'ptr', 'Potri.010G076900' => 'ptr', 'Pp3c12_9180' => 'ppa', 'Pp3c13_19770' => 'ppa', 'Pp3c14_22950' => 'ppa', 'Pp3c16_12160' => 'ppa', 'Pp3c27_7820' => 'ppa', 'Pp3c2_3490' => 'ppa', 'Pp3c3_23700' => 'ppa', 'Pp3c3_36520' => 'ppa', 'Pp3c4_15250' => 'ppa', 'PRCOL_00007002' => 'pco', 'Prupe.1G030600' => 'ppe', 'Prupe.1G030700' => 'ppe', 'Prupe.6G345200' => 'ppe', 'Prupe.8G230300' => 'ppe', 'Prupe.8G230500' => 'ppe', 'Psat3g059600' => 'psa', 'Psat5g200920' => 'psa', 'Psat6g056440' => 'psa', 'Psat6g057360' => 'psa', 'Psat6g134120' => 'psa', 'Psat6g134160' => 'psa', 'Psat7g008640' => 'psa', 'Psat7g185240' => 'psa', 'PSO017G1330' => 'pso', 'PSO063G6097' => 'pso', 'PSO170G0835' => 'pso', 'PSO170G2499' => 'pso', 'PSO210G5058' => 'pso', 'PSO210G6154' => 'pso', 'PSO585G0031' => 'pso', 'PSO832G0264' => 'pso', 'PSO832G4288' => 'pso', 'QL03p027355' => 'qlo', 'QL03p027430' => 'qlo', 'QL04p081380' => 'qlo', 'QL06p015642' => 'qlo', 'QL06p015650' => 'qlo', 'QL06p015686' => 'qlo', 'QL12p042927' => 'qlo', 'QL93p1863_0035' => 'qlo', 'RcHm_v2.0_Chr3g0450581' => 'rch', 'RcHm_v2.0_Chr4g0390371' => 'rch', 'RcHm_v2.0_Chr4g0390381' => 'rch', 'RcHm_v2.0_Chr4g0390491' => 'rch', 'RcHm_v2.0_Chr4g0390501' => 'rch', 'RcHm_v2.0_Chr6g0289231' => 'rch', 'Rhsim04G0190400' => 'rsi', 'Rhsim04G0190500' => 'rsi', 'Rhsim04G0190600' => 'rsi', 'Rhsim13G0031400' => 'rsi', 'Rhsim13G0165600' => 'rsi', 'RhsimUnG0114600' => 'rsi', 'RhsimUnG0114700' => 'rsi', 'Sabra02G0034800' => 'sbr', 'Sabra02G0035100' => 'sbr', 'Sabra05G0168600' => 'sbr', 'Sabra05G0168800' => 'sbr', 'Sabra08G0123700' => 'sbr', 'Sabra10G0031900' => 'sbr', 'Sabra13G0039000' => 'sbr', 'SalBow2G0782' => 'sbo', 'SalBow2G1403' => 'sbo', 'SalBow4G0074' => 'sbo', 'SalBow4G2635' => 'sbo', 'SalBow5G3010' => 'sbo', 'Sc05g0000870' => 'sci', 'Sc05g0000890' => 'sci', 'Sc13g0005000' => 'sci', 'Sc13g0005030' => 'sci', 'Sc19g0003790' => 'sci', 'Sc19g0003800' => 'sci', 'Sed0003467' => 'sed', 'Sed0009355' => 'sed', 'Sed0009894' => 'sed', 'Sed0011972' => 'sed', 'Sed0021483' => 'sed', 'Sed0021750' => 'sed', 'Sed0026279' => 'sed', 'SEGI_05312' => 'sgi', 'SEGI_10112' => 'sgi', 'SEGI_15835' => 'sgi', 'SEGI_30386' => 'sgi', 'SEGI_34122' => 'sgi', 'SEGI_35063' => 'sgi', 'SGA_v2.0_scaffold101G29794' => 'sas', 'SGA_v2.0_scaffold1G00573' => 'sas', 'SGA_v2.0_scaffold79G25637' => 'sas', 'SGA_v2.0_scaffold88G27283' => 'sas', 'SGA_v2.0_scaffold88G27285' => 'sas', 'SGA_v2.0_scaffold88G27331' => 'sas', 'SHI09937' => 'shi', 'SMO119G0302' => 'smo', 'SMO137G0231' => 'smo', 'SMO367G1151' => 'smo', 'Solyc02g082000.3' => 'sly', 'Solyc06g031670.3' => 'sly', 'Solyc06g053810.3' => 'sly', 'Solyc07g025457.1' => 'sly', 'Solyc08g059740.1' => 'sly', 'Solyc08g059750.3' => 'sly', 'Solyc09g083370.3' => 'sly', 'Solyc12g038950.3' => 'sly', 'Sopen02g026630' => 'spe', 'Sopen06g018930' => 'spe', 'Sopen06g018940' => 'spe', 'Sopen08g009460' => 'spe', 'Sopen09g032290' => 'spe', 'Sp1g03080' => 'spa', 'Sp1g03090' => 'spa', 'Sp1g05480' => 'spa', 'Sp2g07860' => 'spa', 'Sp2g08430' => 'spa', 'Sp2g08440' => 'spa', 'Sp2g26200' => 'spa', 'Sp4g13170' => 'spa', 'Sp6g33840' => 'spa', 'SpUn1204_0010' => 'spa', 'TAR365G0908' => 'tar', 'TAR381G1270' => 'tar', 'TAR381G1651' => 'tar', 'TAR625G1131' => 'tar', 'TAR633G0962' => 'tar', 'TAR633G1729' => 'tar', 'TAR633G1864' => 'tar', 'TAR636G0221' => 'tar', 'TAR636G0314' => 'tar', 'TAR636G3202' => 'tar', 'THA.LOC104800805' => 'tha', 'THA.LOC104801096' => 'tha', 'THA.LOC104801555' => 'tha', 'THA.LOC104808491' => 'tha', 'THA.LOC104808595' => 'tha', 'THA.LOC104815985' => 'tha', 'THA.LOC104822250' => 'tha', 'THA.LOC104826071' => 'tha', 'Thecc.01G265200' => 'tca', 'Thecc.01G265300' => 'tca', 'Thecc.01G265700' => 'tca', 'Thecc.03G109100' => 'tca', 'Thecc.04G245900' => 'tca', 'Thecc.04G246000' => 'tca', 'Thhalv10003334m.g' => 'esa', 'Thhalv10005508m.g' => 'esa', 'Thhalv10005643m.g' => 'esa', 'Thhalv10007316m.g' => 'esa', 'Thhalv10009006m.g' => 'esa', 'Thhalv10009309m.g' => 'esa', 'Thhalv10014917m.g' => 'esa', 'Thhalv10014919m.g' => 'esa', 'Thhalv10015393m.g' => 'esa', 'Thhalv10016515m.g' => 'esa', 'Thhalv10029242m.g' => 'esa', 'TPR.G16654' => 'tpr', 'TPR.G20589' => 'tpr', 'TPR.G23029' => 'tpr', 'TPR.G27731' => 'tpr', 'TPR.G28889' => 'tpr', 'TPR.G28899' => 'tpr', 'TPR.G30846' => 'tpr', 'TPR.G5452' => 'tpr', 'TPR.G5713' => 'tpr', 'TPR.G9046' => 'tpr', 'TPR.G9061' => 'tpr', 'TWI09G1075' => 'twi', 'TWI12G0806' => 'twi', 'TWI18G0108' => 'twi', 'TWI53G1361' => 'twi', 'TWI73G0185' => 'twi', 'TWI73G0427' => 'twi', 'unitig_37.g12001' => 'ugi', 'unitig_747.g21660' => 'ugi', 'unitig_748.g7232' => 'ugi', 'unitig_748.g7315' => 'ugi', 'unitig_85.g27262' => 'ugi', 'unitig_92.g28220' => 'ugi', 'vmacro02632' => 'vma', 'vmacro08410' => 'vma', 'vmacro08411' => 'vma', 'vmacro15407' => 'vma', 'VMungo0251G3619' => 'vmu', 'VMungo0720G1204' => 'vmu', 'VMungo0720G1918' => 'vmu', 'VMungo0720G2387' => 'vmu', 'VMungo0720G2961' => 'vmu', 'VMungo1215G2154' => 'vmu', 'VMungo1383G2411' => 'vmu', 'Zm00001eb051130' => 'zma', 'Zm00001eb116830' => 'zma', 'Zm00001eb116850' => 'zma', 'Zm00001eb151740' => 'zma', 'Zm00001eb292360' => 'zma', 'Zm00001eb301640' => 'zma' ), 'gf_id' => 'HOM05D000856', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000856' ), 'data_identifier' => 'HOM05D000856', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000856', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p00010' => 'bna', 'A03p04160' => 'bna', 'A03p17160' => 'bna', 'A04p23370' => 'bna', 'A05p14860' => 'bna', 'A08p37020' => 'bna', 'A09p08050' => 'bna', 'A09p66800' => 'bna', 'A09p67940' => 'bna', 'A10p02680' => 'bna', 'A10p05320' => 'bna', 'Aa31LG1G20560' => 'aar', 'Aa31LG1G20610' => 'aar', 'Aa31LG1G7810' => 'aar', 'Aa31LG5G3590' => 'aar', 'Aa31LG5G6140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3819' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4683' => 'aag', 'Actinidia04480' => 'ach', 'Actinidia05466' => 'ach', 'Actinidia08445' => 'ach', 'Actinidia21170' => 'ach', 'Actinidia24812' => 'ach', 'Actinidia24951' => 'ach', 'Actinidia40088' => 'ach', 'Ah.02g111660' => 'amhyb', 'Ah.11g048900' => 'amhyb', 'Ah.11g049910' => 'amhyb', 'AL1G13870' => 'aly', 'AL1G13880' => 'aly', 'AL1G16760' => 'aly', 'AL390U10020' => 'aly', 'AL4G25520' => 'aly', 'AL6G19890' => 'aly', 'AL6G19900' => 'aly', 'AL6G19910' => 'aly', 'AL8G40100' => 'aly', 'Aqoxy2G03562' => 'aox', 'Aqoxy5G00316' => 'aox', 'Aqoxy5G00926' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1628KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1H403S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2FU6SJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.882I6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8YRY2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YN1SN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AF70II' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZA8L1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F916KL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHRD8H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KTZ8QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S22EMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8M29T' => 'arhy', 'AT1G04270' => 'ath', 'AT1G04280' => 'ath', 'AT1G06750' => 'ath', 'AT1G33850' => 'ath', 'AT2G30630' => 'ath', 'AT5G09490' => 'ath', 'AT5G09500' => 'ath', 'AT5G09510' => 'ath', 'AT5G43640' => 'ath', 'AT5G63070' => 'ath', 'ATR0605G315' => 'atr', 'Atru.chr11.175' => 'acertr', 'Atru.chr11.653' => 'acertr', 'Atru.chr3.1616' => 'acertr', 'Atru.chr4.2230' => 'acertr', 'Atru.chr4.2232' => 'acertr', 'Atru.chr5.1598' => 'acertr', 'Atru.chr5.1600' => 'acertr', 'Atru.chr5.2188' => 'acertr', 'AUR62008326' => 'cqu', 'AUR62011922' => 'cqu', 'AUR62011924' => 'cqu', 'AUR62021771' => 'cqu', 'AUR62032237' => 'cqu', 'AUR62032240' => 'cqu', 'BcaB01g05572' => 'bca', 'BcaB02g10337' => 'bca', 'BcaB04g19944' => 'bca', 'BcaB05g21548' => 'bca', 'BcaB05g21549' => 'bca', 'BcaB05g23227' => 'bca', 'BcaB06g26256' => 'bca', 'BcaB06g26257' => 'bca', 'BcaB06g28379' => 'bca', 'BcaC02g11159' => 'bca', 'BcaC03g13258' => 'bca', 'BcaC03g13259' => 'bca', 'BcaC05g24456' => 'bca', 'BcaC05g24457' => 'bca', 'BcaC07g36922' => 'bca', 'BcaC07g36923' => 'bca', 'BcaC07g42050' => 'bca', 'BcaC07g42176' => 'bca', 'BcaC07g42195' => 'bca', 'BcaC07g42196' => 'bca', 'BcaNung06674' => 'bca', 'BolC2t06351H' => 'bol', 'BolC2t06352H' => 'bol', 'BolC3t12993H' => 'bol', 'BolC4t23525H' => 'bol', 'BolC4t27475H' => 'bol', 'BolC5t29025H' => 'bol', 'BolC5t29026H' => 'bol', 'BolC8t46898H' => 'bol', 'BolC8t46899H' => 'bol', 'BolC8t52630H' => 'bol', 'BolC8t52765H' => 'bol', 'BolC9t53824H' => 'bol', 'BraA03t09760Z' => 'bra', 'BraA03t10990Z' => 'bra', 'BraA05t20413Z' => 'bra', 'BraA08t35602Z' => 'bra', 'BraA09t36458Z' => 'bra', 'BraA09t42018Z' => 'bra', 'BraA09t42129Z' => 'bra', 'BraA10t42536Z' => 'bra', 'BraA10t42537Z' => 'bra', 'C01p10690' => 'bna', 'C02p03890' => 'bna', 'C02p03900' => 'bna', 'C03p04620' => 'bna', 'C04p19870' => 'bna', 'C04p59670' => 'bna', 'C05p02460' => 'bna', 'C05p02470' => 'bna', 'C08p00980' => 'bna', 'C08p00990' => 'bna', 'C08p51030' => 'bna', 'C08p52360' => 'bna', 'C09p09120' => 'bna', 'CAN.G19.15' => 'can', 'CAN.G251.10' => 'can', 'CAN.G251.9' => 'can', 'CAN.G398.24' => 'can', 'CAN.G410.32' => 'can', 'CAN.G881.2' => 'can', 'CANSAT01G3025' => 'cansat', 'CANSAT78G1211' => 'cansat', 'CANSAT78G1218' => 'cansat', 'CANSAT78G1521' => 'cansat', 'CANSAT78G1670' => 'cansat', 'CARHR003600' => 'chi', 'CARHR003610' => 'chi', 'CARHR006290' => 'chi', 'CARHR006430' => 'chi', 'CARHR124110' => 'chi', 'CARHR203870' => 'chi', 'CARHR203880' => 'chi', 'CARHR203890' => 'chi', 'CARHR276880' => 'chi', 'Carub.0001s0346' => 'cru', 'Carub.0001s0347' => 'cru', 'Carub.0001s0607' => 'cru', 'Carub.0003s2768' => 'cru', 'Carub.0003s2769' => 'cru', 'Carub.0004s1178' => 'cru', 'Carub.0006s0806' => 'cru', 'Carub.0006s0807' => 'cru', 'Carub.0006s0808' => 'cru', 'Carub.0008s0501' => 'cru', 'Carub.0008s2379' => 'cru', 'Ca_08655_v3' => 'car', 'Ca_08922_v3' => 'car', 'Ca_08923_v3' => 'car', 'Ca_09119_v3' => 'car', 'Ca_09703_v3' => 'car', 'Ca_09705_v3' => 'car', 'Ca_09835_v3' => 'car', 'Ca_26403_v3' => 'car', 'Ca_30719_v3' => 'car', 'CBR_g17958' => 'cbr', 'CBR_g40516' => 'cbr', 'Cc00_g05350' => 'ccan', 'Cc01_g18690' => 'ccan', 'Cc03_g04830' => 'ccan', 'Cc03_g04850' => 'ccan', 'CDE02G4469' => 'cde', 'CDE06G0883' => 'cde', 'CDE06G1295' => 'cde', 'CDE06G1390' => 'cde', 'CDE07G0584' => 'cde', 'CDE07G1084' => 'cde', 'CDE08G1259' => 'cde', 'Cfa002341' => 'cfa', 'Cfa024337' => 'cfa', 'Ciclev10004749m.g' => 'ccl', 'Ciclev10006127m.g' => 'ccl', 'Ciclev10019720m.g' => 'ccl', 'Ciclev10022652m.g' => 'ccl', 'CiPaw.01G190400' => 'cil', 'CiPaw.01G190500' => 'cil', 'CiPaw.02G116400' => 'cil', 'CiPaw.02G116500' => 'cil', 'CiPaw.04G183000' => 'cil', 'CiPaw.04G183300' => 'cil', 'ClCG05G004610' => 'cla', 'ClCG05G004620' => 'cla', 'ClCG06G006730' => 'cla', 'ClCG06G006740' => 'cla', 'ClCG11G003690' => 'cla', 'COL.COLO4_08276' => 'col', 'COL.COLO4_08277' => 'col', 'COL.COLO4_15787' => 'col', 'COL.COLO4_15789' => 'col', 'Cpa.g.c44815' => 'cpa', 'Cpa.g.sc52.144' => 'cpa', 'Cpa.g.sc58.46' => 'cpa', 'Cpa.g.sc58.47' => 'cpa', 'Cre08.g360900' => 'cre', 'CsaV3_2G013030' => 'csa', 'CsaV3_2G013050' => 'csa', 'CsaV3_2G015620' => 'csa', 'CsaV3_3G012590' => 'csa', 'CsaV3_3G012600' => 'csa', 'CSS0001641' => 'camsi', 'CSS0008310' => 'camsi', 'CSS0013011' => 'camsi', 'CSS0017147' => 'camsi', 'CSS0022970' => 'camsi', 'CSS0025655' => 'camsi', 'CSS0028665' => 'camsi', 'CSS0029117' => 'camsi', 'CSS0032024' => 'camsi', 'CSS0039681' => 'camsi', 'CSS0046516' => 'camsi', 'CSS0050307' => 'camsi', 'DCAR_005871' => 'dca', 'DCAR_007342' => 'dca', 'DCAR_024228' => 'dca', 'DCAR_027277' => 'dca', 'DCAR_030718' => 'dca', 'Dinv20287' => 'din', 'Dinv22461' => 'din', 'Dinv22464' => 'din', 'Dinv29912' => 'din', 'Dinv29913' => 'din', 'Dinv34580' => 'din', 'Dinv34582' => 'din', 'Dinv44632' => 'din', 'Duzib052G0266' => 'dzi', 'Duzib133G0907' => 'dzi', 'Duzib133G1034' => 'dzi', 'Duzib138G0207' => 'dzi', 'Duzib138G0491' => 'dzi', 'Duzib151G0812' => 'dzi', 'Duzib151G1166' => 'dzi', 'Duzib168G0192' => 'dzi', 'Duzib211G0077' => 'dzi', 'Duzib212G0429' => 'dzi', 'Duzib212G0472' => 'dzi', 'ECA233G2617' => 'eca', 'ECA236G4188' => 'eca', 'ECA240G0936' => 'eca', 'ECA240G1129' => 'eca', 'ECA247G0623' => 'eca', 'EL10Ac5g10451' => 'bvu', 'EL10Ac5g10453' => 'bvu', 'EL10Ac5g10894' => 'bvu', 'Eucgr.H00192' => 'egr', 'Eucgr.H00193' => 'egr', 'Eucgr.H00194' => 'egr', 'Eucgr.J01562' => 'egr', 'Eucgr.K03301' => 'egr', 'FAN02G0632' => 'fan', 'FAN05G5378' => 'fan', 'FAN09G3247' => 'fan', 'FAN12G0435' => 'fan', 'FAN12G2426' => 'fan', 'FAN14G1707' => 'fan', 'FAN14G4725' => 'fan', 'FAN15G2071' => 'fan', 'FAN17G3065' => 'fan', 'FAN19G1376' => 'fan', 'FAN20G0354' => 'fan', 'FAN20G2429' => 'fan', 'FAN20G2658' => 'fan', 'FAN24G2343' => 'fan', 'FAN27G2362' => 'fan', 'FAN28G1765' => 'fan', 'FvH4_1g16020' => 'fve', 'FvH4_2g04890' => 'fve', 'FvH4_2g22270' => 'fve', 'FvH4_4g02630' => 'fve', 'FvH4_4g02640' => 'fve', 'FvH4_6g02650' => 'fve', 'Glyma.02G140600' => 'gma', 'Glyma.03G159900' => 'gma', 'Glyma.05G234800' => 'gma', 'Glyma.07G269600' => 'gma', 'Glyma.08G042300' => 'gma', 'Glyma.10G033500' => 'gma', 'Glyma.10G185200' => 'gma', 'Glyma.17G004300' => 'gma', 'Glyma.19G161900' => 'gma', 'Glyma.20G205100' => 'gma', 'Glyma.20G205200' => 'gma', 'Gohir.A01G139101' => 'ghi', 'Gohir.A02G035600' => 'ghi', 'Gohir.A02G117901' => 'ghi', 'Gohir.A07G210100' => 'ghi', 'Gohir.A07G210200' => 'ghi', 'Gohir.A08G061100' => 'ghi', 'Gohir.A09G223000' => 'ghi', 'Gohir.A09G223100' => 'ghi', 'Gohir.A10G113900' => 'ghi', 'Gohir.A10G114000' => 'ghi', 'Gohir.D02G042300' => 'ghi', 'Gohir.D07G216100' => 'ghi', 'Gohir.D07G216200' => 'ghi', 'Gohir.D08G070400' => 'ghi', 'Gohir.D09G225000' => 'ghi', 'Gohir.D09G225100' => 'ghi', 'Gohir.D10G152300' => 'ghi', 'Gohir.D10G153200' => 'ghi', 'Gohir.D11G133701' => 'ghi', 'Gorai.004G074100' => 'gra', 'Gorai.005G046800' => 'gra', 'Gorai.006G246500' => 'gra', 'Gorai.006G246600' => 'gra', 'Gorai.007G142900' => 'gra', 'Gorai.011G171000' => 'gra', 'Gorai.011G171100' => 'gra', 'Gorai.013G104300' => 'gra', 'Gorai.013G104400' => 'gra', 'GSVIVG01000754001' => 'vvi', 'GSVIVG01000756001' => 'vvi', 'GSVIVG01010903001' => 'vvi', 'GSVIVG01017623001' => 'vvi', 'GSVIVG01018113001' => 'vvi', 'GSVIVG01018116001' => 'vvi', 'GSVIVG01018118001' => 'vvi', 'HanXRQChr03g0076211' => 'han', 'HanXRQChr03g0092431' => 'han', 'HanXRQChr03g0092441' => 'han', 'HanXRQChr03g0092591' => 'han', 'HanXRQChr03g0092671' => 'han', 'HanXRQChr03g0092681' => 'han', 'HanXRQChr03g0092691' => 'han', 'HanXRQChr03g0092701' => 'han', 'HanXRQChr03g0092721' => 'han', 'HanXRQChr03g0092731' => 'han', 'HanXRQChr04g0113681' => 'han', 'HanXRQChr10g0281371' => 'han', 'HanXRQChr11g0337141' => 'han', 'HanXRQChr13g0424521' => 'han', 'HanXRQChr13g0424531' => 'han', 'HanXRQChr13g0424541' => 'han', 'HanXRQChr16g0498221' => 'han', 'Haze_04377' => 'cav', 'Haze_11298' => 'cav', 'Haze_24547' => 'cav', 'Haze_24550' => 'cav', 'Haze_26587' => 'cav', 'Hma1.2p1_0650F.1_g195410' => 'hma', 'Hma1.2p1_0893F.1_g233470' => 'hma', 'HPP92_006508' => 'vpl', 'HPP92_024780' => 'vpl', 'Hund02688' => 'sun', 'Hund09380' => 'sun', 'Hund09381' => 'sun', 'Hund09832' => 'sun', 'Hund09833' => 'sun', 'Hund11351' => 'sun', 'Hund11513' => 'sun', 'Lalb_Chr06g0162591' => 'lal', 'Lalb_Chr06g0162601' => 'lal', 'Lalb_Chr06g0169321' => 'lal', 'Lalb_Chr09g0330951' => 'lal', 'Lalb_Chr16g0387631' => 'lal', 'Lalb_Chr21g0306241' => 'lal', 'Lalb_Chr25g0290051' => 'lal', 'Lalb_Chr25g0290061' => 'lal', 'Lalb_Chr25g0290071' => 'lal', 'Lj1g0003876' => 'lja', 'Lj1P1207T36' => 'lonja', 'Lj2C1156G12' => 'lonja', 'Lj3A793G39' => 'lonja', 'Lj3C580G2' => 'lonja', 'Lj3C780G2' => 'lonja', 'Lj3C780T4' => 'lonja', 'Lj3C793G9' => 'lonja', 'Lj4g0012960' => 'lja', 'Lj5g0021252' => 'lja', 'Lj5g0021484' => 'lja', 'Lj5g0024528' => 'lja', 'Lj6A399T12' => 'lonja', 'Lj6A656G65' => 'lonja', 'Lsat_1_v5_gn_3_125500' => 'lsa', 'Lsat_1_v5_gn_3_125540' => 'lsa', 'Lsat_1_v5_gn_5_72701' => 'lsa', 'Lsat_1_v5_gn_8_91560' => 'lsa', 'Lsat_1_v5_gn_9_9640' => 'lsa', 'Manes.01G200600' => 'mes', 'Manes.01G200700' => 'mes', 'Manes.03G168900' => 'mes', 'Manes.03G169000' => 'mes', 'Manes.05G085801' => 'mes', 'Manes.05G086200' => 'mes', 'Manes.15G036700' => 'mes', 'Manes.15G036900' => 'mes', 'Mapoly0004s0172' => 'mpo', 'Mapoly0023s0001' => 'mpo', 'Mapoly0142s0012' => 'mpo', 'MBI01_g32854_MAGBIO' => 'mbi', 'MBI11_g24427_MAGBIO' => 'mbi', 'MBI11_g47319_MAGBIO' => 'mbi', 'MCO01G433' => 'mco', 'MD00G1187800' => 'mdo', 'MD04G1226500' => 'mdo', 'MD05G1203900' => 'mdo', 'MD10G1191100' => 'mdo', 'MD12G1243500' => 'mdo', 'MD13G1207000' => 'mdo', 'MD13G1207100' => 'mdo', 'MD16G1208600' => 'mdo', 'Medtr1g050352' => 'mtr', 'Medtr1g070385' => 'mtr', 'Medtr1g070450' => 'mtr', 'Medtr1g075200' => 'mtr', 'Medtr1g075250' => 'mtr', 'Medtr1g075260' => 'mtr', 'Medtr1g475250' => 'mtr', 'Medtr4g075450' => 'mtr', 'Medtr7g096300' => 'mtr', 'Medtr8g105110' => 'mtr', 'MELO3C006470.2' => 'cme', 'MELO3C006471.2' => 'cme', 'MELO3C020772.2' => 'cme', 'MELO3C026780.2' => 'cme', 'MELO3C026781.2' => 'cme', 'Migut.D00390' => 'egut', 'Migut.G00435' => 'egut', 'Migut.G00436' => 'egut', 'Migut.G00718' => 'egut', 'MSTRG.21891' => 'ama', 'MSTRG.26910' => 'ama', 'MSTRG.4099' => 'ama', 'MSTRG.9925' => 'ama', 'Nitab4.5_0000165g0010' => 'nta', 'Nitab4.5_0000209g0180' => 'nta', 'Nitab4.5_0000244g0440' => 'nta', 'Nitab4.5_0000525g0220' => 'nta', 'Nitab4.5_0001597g0020' => 'nta', 'Nitab4.5_0001878g0040' => 'nta', 'Nitab4.5_0001878g0060' => 'nta', 'Nitab4.5_0002838g0100' => 'nta', 'Nitab4.5_0002838g0120' => 'nta', 'Nitab4.5_0004798g0030' => 'nta', 'Nitab4.5_0005420g0010' => 'nta', 'Nitab4.5_0005507g0010' => 'nta', 'Nitab4.5_0005574g0020' => 'nta', 'Nitab4.5_0005838g0010' => 'nta', 'Nitab4.5_0010580g0020' => 'nta', 'Nn1g02599' => 'nnu', 'Nn1g02608' => 'nnu', 'Nn3g17742' => 'nnu', 'Nn3g19534' => 'nnu', 'Nn3g19535' => 'nnu', 'Oeu008790.1' => 'oeu', 'Oeu008792.1' => 'oeu', 'Oeu032590.1' => 'oeu', 'Oeu035349.1' => 'oeu', 'Oeu049791.1' => 'oeu', 'Os01g0774500' => 'osa', 'Os03g0628800' => 'osa', 'Os03g0798600' => 'osa', 'Os05g0508800' => 'osa', 'Peaxi162Scf00036g02018' => 'pax', 'Peaxi162Scf00578g00032' => 'pax', 'Peaxi162Scf00578g00317' => 'pax', 'Peaxi162Scf00785g00114' => 'pax', 'Peaxi162Scf00813g00119' => 'pax', 'Peaxi162Scf00906g00227' => 'pax', 'PGR004G0875' => 'pgr', 'PGR004G2424' => 'pgr', 'PGR031G1239' => 'pgr', 'PGR031G2474' => 'pgr', 'PGR044G0423' => 'pgr', 'PGSC0003DMG400001128' => 'stu', 'PGSC0003DMG400007336' => 'stu', 'PGSC0003DMG400016318' => 'stu', 'PGSC0003DMG400016319' => 'stu', 'PGSC0003DMG400018074' => 'stu', 'Phvul.001G157700' => 'pvu', 'Phvul.002G148550' => 'pvu', 'Phvul.002G320200' => 'pvu', 'Phvul.003G089200' => 'pvu', 'Phvul.007G126000' => 'pvu', 'Phvul.007G126100' => 'pvu', 'Phvul.007G178000' => 'pvu', 'Phvul.007G178200' => 'pvu', 'Potri.002G043000' => 'ptr', 'Potri.002G043200' => 'ptr', 'Potri.003G123750' => 'ptr', 'Potri.005G055401' => 'ptr', 'Potri.005G219700' => 'ptr', 'Potri.005G220000' => 'ptr', 'Potri.008G161901' => 'ptr', 'Potri.008G162000' => 'ptr', 'Potri.008G162400' => 'ptr', 'Potri.010G076900' => 'ptr', 'Pp3c12_9180' => 'ppa', 'Pp3c13_19770' => 'ppa', 'Pp3c14_22950' => 'ppa', 'Pp3c16_12160' => 'ppa', 'Pp3c27_7820' => 'ppa', 'Pp3c2_3490' => 'ppa', 'Pp3c3_23700' => 'ppa', 'Pp3c3_36520' => 'ppa', 'Pp3c4_15250' => 'ppa', 'PRCOL_00007002' => 'pco', 'Prupe.1G030600' => 'ppe', 'Prupe.1G030700' => 'ppe', 'Prupe.6G345200' => 'ppe', 'Prupe.8G230300' => 'ppe', 'Prupe.8G230500' => 'ppe', 'Psat3g059600' => 'psa', 'Psat5g200920' => 'psa', 'Psat6g056440' => 'psa', 'Psat6g057360' => 'psa', 'Psat6g134120' => 'psa', 'Psat6g134160' => 'psa', 'Psat7g008640' => 'psa', 'Psat7g185240' => 'psa', 'PSO017G1330' => 'pso', 'PSO063G6097' => 'pso', 'PSO170G0835' => 'pso', 'PSO170G2499' => 'pso', 'PSO210G5058' => 'pso', 'PSO210G6154' => 'pso', 'PSO585G0031' => 'pso', 'PSO832G0264' => 'pso', 'PSO832G4288' => 'pso', 'QL03p027355' => 'qlo', 'QL03p027430' => 'qlo', 'QL04p081380' => 'qlo', 'QL06p015642' => 'qlo', 'QL06p015650' => 'qlo', 'QL06p015686' => 'qlo', 'QL12p042927' => 'qlo', 'QL93p1863_0035' => 'qlo', 'RcHm_v2.0_Chr3g0450581' => 'rch', 'RcHm_v2.0_Chr4g0390371' => 'rch', 'RcHm_v2.0_Chr4g0390381' => 'rch', 'RcHm_v2.0_Chr4g0390491' => 'rch', 'RcHm_v2.0_Chr4g0390501' => 'rch', 'RcHm_v2.0_Chr6g0289231' => 'rch', 'Rhsim04G0190400' => 'rsi', 'Rhsim04G0190500' => 'rsi', 'Rhsim04G0190600' => 'rsi', 'Rhsim13G0031400' => 'rsi', 'Rhsim13G0165600' => 'rsi', 'RhsimUnG0114600' => 'rsi', 'RhsimUnG0114700' => 'rsi', 'Sabra02G0034800' => 'sbr', 'Sabra02G0035100' => 'sbr', 'Sabra05G0168600' => 'sbr', 'Sabra05G0168800' => 'sbr', 'Sabra08G0123700' => 'sbr', 'Sabra10G0031900' => 'sbr', 'Sabra13G0039000' => 'sbr', 'SalBow2G0782' => 'sbo', 'SalBow2G1403' => 'sbo', 'SalBow4G0074' => 'sbo', 'SalBow4G2635' => 'sbo', 'SalBow5G3010' => 'sbo', 'Sc05g0000870' => 'sci', 'Sc05g0000890' => 'sci', 'Sc13g0005000' => 'sci', 'Sc13g0005030' => 'sci', 'Sc19g0003790' => 'sci', 'Sc19g0003800' => 'sci', 'Sed0003467' => 'sed', 'Sed0009355' => 'sed', 'Sed0009894' => 'sed', 'Sed0011972' => 'sed', 'Sed0021483' => 'sed', 'Sed0021750' => 'sed', 'Sed0026279' => 'sed', 'SEGI_05312' => 'sgi', 'SEGI_10112' => 'sgi', 'SEGI_15835' => 'sgi', 'SEGI_30386' => 'sgi', 'SEGI_34122' => 'sgi', 'SEGI_35063' => 'sgi', 'SGA_v2.0_scaffold101G29794' => 'sas', 'SGA_v2.0_scaffold1G00573' => 'sas', 'SGA_v2.0_scaffold79G25637' => 'sas', 'SGA_v2.0_scaffold88G27283' => 'sas', 'SGA_v2.0_scaffold88G27285' => 'sas', 'SGA_v2.0_scaffold88G27331' => 'sas', 'SHI09937' => 'shi', 'SMO119G0302' => 'smo', 'SMO137G0231' => 'smo', 'SMO367G1151' => 'smo', 'Solyc02g082000.3' => 'sly', 'Solyc06g031670.3' => 'sly', 'Solyc06g053810.3' => 'sly', 'Solyc07g025457.1' => 'sly', 'Solyc08g059740.1' => 'sly', 'Solyc08g059750.3' => 'sly', 'Solyc09g083370.3' => 'sly', 'Solyc12g038950.3' => 'sly', 'Sopen02g026630' => 'spe', 'Sopen06g018930' => 'spe', 'Sopen06g018940' => 'spe', 'Sopen08g009460' => 'spe', 'Sopen09g032290' => 'spe', 'Sp1g03080' => 'spa', 'Sp1g03090' => 'spa', 'Sp1g05480' => 'spa', 'Sp2g07860' => 'spa', 'Sp2g08430' => 'spa', 'Sp2g08440' => 'spa', 'Sp2g26200' => 'spa', 'Sp4g13170' => 'spa', 'Sp6g33840' => 'spa', 'SpUn1204_0010' => 'spa', 'TAR365G0908' => 'tar', 'TAR381G1270' => 'tar', 'TAR381G1651' => 'tar', 'TAR625G1131' => 'tar', 'TAR633G0962' => 'tar', 'TAR633G1729' => 'tar', 'TAR633G1864' => 'tar', 'TAR636G0221' => 'tar', 'TAR636G0314' => 'tar', 'TAR636G3202' => 'tar', 'THA.LOC104800805' => 'tha', 'THA.LOC104801096' => 'tha', 'THA.LOC104801555' => 'tha', 'THA.LOC104808491' => 'tha', 'THA.LOC104808595' => 'tha', 'THA.LOC104815985' => 'tha', 'THA.LOC104822250' => 'tha', 'THA.LOC104826071' => 'tha', 'Thecc.01G265200' => 'tca', 'Thecc.01G265300' => 'tca', 'Thecc.01G265700' => 'tca', 'Thecc.03G109100' => 'tca', 'Thecc.04G245900' => 'tca', 'Thecc.04G246000' => 'tca', 'Thhalv10003334m.g' => 'esa', 'Thhalv10005508m.g' => 'esa', 'Thhalv10005643m.g' => 'esa', 'Thhalv10007316m.g' => 'esa', 'Thhalv10009006m.g' => 'esa', 'Thhalv10009309m.g' => 'esa', 'Thhalv10014917m.g' => 'esa', 'Thhalv10014919m.g' => 'esa', 'Thhalv10015393m.g' => 'esa', 'Thhalv10016515m.g' => 'esa', 'Thhalv10029242m.g' => 'esa', 'TPR.G16654' => 'tpr', 'TPR.G20589' => 'tpr', 'TPR.G23029' => 'tpr', 'TPR.G27731' => 'tpr', 'TPR.G28889' => 'tpr', 'TPR.G28899' => 'tpr', 'TPR.G30846' => 'tpr', 'TPR.G5452' => 'tpr', 'TPR.G5713' => 'tpr', 'TPR.G9046' => 'tpr', 'TPR.G9061' => 'tpr', 'TWI09G1075' => 'twi', 'TWI12G0806' => 'twi', 'TWI18G0108' => 'twi', 'TWI53G1361' => 'twi', 'TWI73G0185' => 'twi', 'TWI73G0427' => 'twi', 'unitig_37.g12001' => 'ugi', 'unitig_747.g21660' => 'ugi', 'unitig_748.g7232' => 'ugi', 'unitig_748.g7315' => 'ugi', 'unitig_85.g27262' => 'ugi', 'unitig_92.g28220' => 'ugi', 'vmacro02632' => 'vma', 'vmacro08410' => 'vma', 'vmacro08411' => 'vma', 'vmacro15407' => 'vma', 'VMungo0251G3619' => 'vmu', 'VMungo0720G1204' => 'vmu', 'VMungo0720G1918' => 'vmu', 'VMungo0720G2387' => 'vmu', 'VMungo0720G2961' => 'vmu', 'VMungo1215G2154' => 'vmu', 'VMungo1383G2411' => 'vmu', 'Zm00001eb051130' => 'zma', 'Zm00001eb116830' => 'zma', 'Zm00001eb116850' => 'zma', 'Zm00001eb151740' => 'zma', 'Zm00001eb292360' => 'zma', 'Zm00001eb301640' => 'zma' ) $gf_id = 'HOM05D000856' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000856' ) $data_identifier = 'HOM05D000856' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 13, 'ath' => (int) 10, 'atr' => (int) 1, 'acertr' => (int) 8, 'cqu' => (int) 6, 'bca' => (int) 21, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 11, 'car' => (int) 9, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 8, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 5, 'fan' => (int) 16, 'fve' => (int) 6, 'gma' => (int) 11, 'ghi' => (int) 19, 'gra' => (int) 9, 'vvi' => (int) 7, 'han' => (int) 17, 'cav' => (int) 5, 'hma' => (int) 2, 'vpl' => (int) 2, 'sun' => (int) 7, 'lal' => (int) 9, 'lja' => (int) 5, 'lonja' => (int) 9, 'lsa' => (int) 5, 'mes' => (int) 8, 'mpo' => (int) 3, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 10, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 15, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 9, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 9, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 6, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 5, 'spa' => (int) 10, 'tar' => (int) 10, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 11, 'tpr' => (int) 11, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 4, 'vmu' => (int) 7, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb301640' $species_info = array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ) $local_species = 'arhy' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000856', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p00010' => 'bna', 'A03p04160' => 'bna', 'A03p17160' => 'bna', 'A04p23370' => 'bna', 'A05p14860' => 'bna', 'A08p37020' => 'bna', 'A09p08050' => 'bna', 'A09p66800' => 'bna', 'A09p67940' => 'bna', 'A10p02680' => 'bna', 'A10p05320' => 'bna', 'Aa31LG1G20560' => 'aar', 'Aa31LG1G20610' => 'aar', 'Aa31LG1G7810' => 'aar', 'Aa31LG5G3590' => 'aar', 'Aa31LG5G6140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3819' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4683' => 'aag', 'Actinidia04480' => 'ach', 'Actinidia05466' => 'ach', 'Actinidia08445' => 'ach', 'Actinidia21170' => 'ach', 'Actinidia24812' => 'ach', 'Actinidia24951' => 'ach', 'Actinidia40088' => 'ach', 'Ah.02g111660' => 'amhyb', 'Ah.11g048900' => 'amhyb', 'Ah.11g049910' => 'amhyb', 'AL1G13870' => 'aly', 'AL1G13880' => 'aly', 'AL1G16760' => 'aly', 'AL390U10020' => 'aly', 'AL4G25520' => 'aly', 'AL6G19890' => 'aly', 'AL6G19900' => 'aly', 'AL6G19910' => 'aly', 'AL8G40100' => 'aly', 'Aqoxy2G03562' => 'aox', 'Aqoxy5G00316' => 'aox', 'Aqoxy5G00926' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1628KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1H403S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2FU6SJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.882I6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8YRY2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YN1SN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AF70II' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZA8L1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F916KL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHRD8H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KTZ8QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S22EMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8M29T' => 'arhy', 'AT1G04270' => 'ath', 'AT1G04280' => 'ath', 'AT1G06750' => 'ath', 'AT1G33850' => 'ath', 'AT2G30630' => 'ath', 'AT5G09490' => 'ath', 'AT5G09500' => 'ath', 'AT5G09510' => 'ath', 'AT5G43640' => 'ath', 'AT5G63070' => 'ath', 'ATR0605G315' => 'atr', 'Atru.chr11.175' => 'acertr', 'Atru.chr11.653' => 'acertr', 'Atru.chr3.1616' => 'acertr', 'Atru.chr4.2230' => 'acertr', 'Atru.chr4.2232' => 'acertr', 'Atru.chr5.1598' => 'acertr', 'Atru.chr5.1600' => 'acertr', 'Atru.chr5.2188' => 'acertr', 'AUR62008326' => 'cqu', 'AUR62011922' => 'cqu', 'AUR62011924' => 'cqu', 'AUR62021771' => 'cqu', 'AUR62032237' => 'cqu', 'AUR62032240' => 'cqu', 'BcaB01g05572' => 'bca', 'BcaB02g10337' => 'bca', 'BcaB04g19944' => 'bca', 'BcaB05g21548' => 'bca', 'BcaB05g21549' => 'bca', 'BcaB05g23227' => 'bca', 'BcaB06g26256' => 'bca', 'BcaB06g26257' => 'bca', 'BcaB06g28379' => 'bca', 'BcaC02g11159' => 'bca', 'BcaC03g13258' => 'bca', 'BcaC03g13259' => 'bca', 'BcaC05g24456' => 'bca', 'BcaC05g24457' => 'bca', 'BcaC07g36922' => 'bca', 'BcaC07g36923' => 'bca', 'BcaC07g42050' => 'bca', 'BcaC07g42176' => 'bca', 'BcaC07g42195' => 'bca', 'BcaC07g42196' => 'bca', 'BcaNung06674' => 'bca', 'BolC2t06351H' => 'bol', 'BolC2t06352H' => 'bol', 'BolC3t12993H' => 'bol', 'BolC4t23525H' => 'bol', 'BolC4t27475H' => 'bol', 'BolC5t29025H' => 'bol', 'BolC5t29026H' => 'bol', 'BolC8t46898H' => 'bol', 'BolC8t46899H' => 'bol', 'BolC8t52630H' => 'bol', 'BolC8t52765H' => 'bol', 'BolC9t53824H' => 'bol', 'BraA03t09760Z' => 'bra', 'BraA03t10990Z' => 'bra', 'BraA05t20413Z' => 'bra', 'BraA08t35602Z' => 'bra', 'BraA09t36458Z' => 'bra', 'BraA09t42018Z' => 'bra', 'BraA09t42129Z' => 'bra', 'BraA10t42536Z' => 'bra', 'BraA10t42537Z' => 'bra', 'C01p10690' => 'bna', 'C02p03890' => 'bna', 'C02p03900' => 'bna', 'C03p04620' => 'bna', 'C04p19870' => 'bna', 'C04p59670' => 'bna', 'C05p02460' => 'bna', 'C05p02470' => 'bna', 'C08p00980' => 'bna', 'C08p00990' => 'bna', 'C08p51030' => 'bna', 'C08p52360' => 'bna', 'C09p09120' => 'bna', 'CAN.G19.15' => 'can', 'CAN.G251.10' => 'can', 'CAN.G251.9' => 'can', 'CAN.G398.24' => 'can', 'CAN.G410.32' => 'can', 'CAN.G881.2' => 'can', 'CANSAT01G3025' => 'cansat', 'CANSAT78G1211' => 'cansat', 'CANSAT78G1218' => 'cansat', 'CANSAT78G1521' => 'cansat', 'CANSAT78G1670' => 'cansat', 'CARHR003600' => 'chi', 'CARHR003610' => 'chi', 'CARHR006290' => 'chi', 'CARHR006430' => 'chi', 'CARHR124110' => 'chi', 'CARHR203870' => 'chi', 'CARHR203880' => 'chi', 'CARHR203890' => 'chi', 'CARHR276880' => 'chi', 'Carub.0001s0346' => 'cru', 'Carub.0001s0347' => 'cru', 'Carub.0001s0607' => 'cru', 'Carub.0003s2768' => 'cru', 'Carub.0003s2769' => 'cru', 'Carub.0004s1178' => 'cru', 'Carub.0006s0806' => 'cru', 'Carub.0006s0807' => 'cru', 'Carub.0006s0808' => 'cru', 'Carub.0008s0501' => 'cru', 'Carub.0008s2379' => 'cru', 'Ca_08655_v3' => 'car', 'Ca_08922_v3' => 'car', 'Ca_08923_v3' => 'car', 'Ca_09119_v3' => 'car', 'Ca_09703_v3' => 'car', 'Ca_09705_v3' => 'car', 'Ca_09835_v3' => 'car', 'Ca_26403_v3' => 'car', 'Ca_30719_v3' => 'car', 'CBR_g17958' => 'cbr', 'CBR_g40516' => 'cbr', 'Cc00_g05350' => 'ccan', 'Cc01_g18690' => 'ccan', 'Cc03_g04830' => 'ccan', 'Cc03_g04850' => 'ccan', 'CDE02G4469' => 'cde', 'CDE06G0883' => 'cde', 'CDE06G1295' => 'cde', 'CDE06G1390' => 'cde', 'CDE07G0584' => 'cde', 'CDE07G1084' => 'cde', 'CDE08G1259' => 'cde', 'Cfa002341' => 'cfa', 'Cfa024337' => 'cfa', 'Ciclev10004749m.g' => 'ccl', 'Ciclev10006127m.g' => 'ccl', 'Ciclev10019720m.g' => 'ccl', 'Ciclev10022652m.g' => 'ccl', 'CiPaw.01G190400' => 'cil', 'CiPaw.01G190500' => 'cil', 'CiPaw.02G116400' => 'cil', 'CiPaw.02G116500' => 'cil', 'CiPaw.04G183000' => 'cil', 'CiPaw.04G183300' => 'cil', 'ClCG05G004610' => 'cla', 'ClCG05G004620' => 'cla', 'ClCG06G006730' => 'cla', 'ClCG06G006740' => 'cla', 'ClCG11G003690' => 'cla', 'COL.COLO4_08276' => 'col', 'COL.COLO4_08277' => 'col', 'COL.COLO4_15787' => 'col', 'COL.COLO4_15789' => 'col', 'Cpa.g.c44815' => 'cpa', 'Cpa.g.sc52.144' => 'cpa', 'Cpa.g.sc58.46' => 'cpa', 'Cpa.g.sc58.47' => 'cpa', 'Cre08.g360900' => 'cre', 'CsaV3_2G013030' => 'csa', 'CsaV3_2G013050' => 'csa', 'CsaV3_2G015620' => 'csa', 'CsaV3_3G012590' => 'csa', 'CsaV3_3G012600' => 'csa', 'CSS0001641' => 'camsi', 'CSS0008310' => 'camsi', 'CSS0013011' => 'camsi', 'CSS0017147' => 'camsi', 'CSS0022970' => 'camsi', 'CSS0025655' => 'camsi', 'CSS0028665' => 'camsi', 'CSS0029117' => 'camsi', 'CSS0032024' => 'camsi', 'CSS0039681' => 'camsi', 'CSS0046516' => 'camsi', 'CSS0050307' => 'camsi', 'DCAR_005871' => 'dca', 'DCAR_007342' => 'dca', 'DCAR_024228' => 'dca', 'DCAR_027277' => 'dca', 'DCAR_030718' => 'dca', 'Dinv20287' => 'din', 'Dinv22461' => 'din', 'Dinv22464' => 'din', 'Dinv29912' => 'din', 'Dinv29913' => 'din', 'Dinv34580' => 'din', 'Dinv34582' => 'din', 'Dinv44632' => 'din', 'Duzib052G0266' => 'dzi', 'Duzib133G0907' => 'dzi', 'Duzib133G1034' => 'dzi', 'Duzib138G0207' => 'dzi', 'Duzib138G0491' => 'dzi', 'Duzib151G0812' => 'dzi', 'Duzib151G1166' => 'dzi', 'Duzib168G0192' => 'dzi', 'Duzib211G0077' => 'dzi', 'Duzib212G0429' => 'dzi', 'Duzib212G0472' => 'dzi', 'ECA233G2617' => 'eca', 'ECA236G4188' => 'eca', 'ECA240G0936' => 'eca', 'ECA240G1129' => 'eca', 'ECA247G0623' => 'eca', 'EL10Ac5g10451' => 'bvu', 'EL10Ac5g10453' => 'bvu', 'EL10Ac5g10894' => 'bvu', 'Eucgr.H00192' => 'egr', 'Eucgr.H00193' => 'egr', 'Eucgr.H00194' => 'egr', 'Eucgr.J01562' => 'egr', 'Eucgr.K03301' => 'egr', 'FAN02G0632' => 'fan', 'FAN05G5378' => 'fan', 'FAN09G3247' => 'fan', 'FAN12G0435' => 'fan', 'FAN12G2426' => 'fan', 'FAN14G1707' => 'fan', 'FAN14G4725' => 'fan', 'FAN15G2071' => 'fan', 'FAN17G3065' => 'fan', 'FAN19G1376' => 'fan', 'FAN20G0354' => 'fan', 'FAN20G2429' => 'fan', 'FAN20G2658' => 'fan', 'FAN24G2343' => 'fan', 'FAN27G2362' => 'fan', 'FAN28G1765' => 'fan', 'FvH4_1g16020' => 'fve', 'FvH4_2g04890' => 'fve', 'FvH4_2g22270' => 'fve', 'FvH4_4g02630' => 'fve', 'FvH4_4g02640' => 'fve', 'FvH4_6g02650' => 'fve', 'Glyma.02G140600' => 'gma', 'Glyma.03G159900' => 'gma', 'Glyma.05G234800' => 'gma', 'Glyma.07G269600' => 'gma', 'Glyma.08G042300' => 'gma', 'Glyma.10G033500' => 'gma', 'Glyma.10G185200' => 'gma', 'Glyma.17G004300' => 'gma', 'Glyma.19G161900' => 'gma', 'Glyma.20G205100' => 'gma', 'Glyma.20G205200' => 'gma', 'Gohir.A01G139101' => 'ghi', 'Gohir.A02G035600' => 'ghi', 'Gohir.A02G117901' => 'ghi', 'Gohir.A07G210100' => 'ghi', 'Gohir.A07G210200' => 'ghi', 'Gohir.A08G061100' => 'ghi', 'Gohir.A09G223000' => 'ghi', 'Gohir.A09G223100' => 'ghi', 'Gohir.A10G113900' => 'ghi', 'Gohir.A10G114000' => 'ghi', 'Gohir.D02G042300' => 'ghi', 'Gohir.D07G216100' => 'ghi', 'Gohir.D07G216200' => 'ghi', 'Gohir.D08G070400' => 'ghi', 'Gohir.D09G225000' => 'ghi', 'Gohir.D09G225100' => 'ghi', 'Gohir.D10G152300' => 'ghi', 'Gohir.D10G153200' => 'ghi', 'Gohir.D11G133701' => 'ghi', 'Gorai.004G074100' => 'gra', 'Gorai.005G046800' => 'gra', 'Gorai.006G246500' => 'gra', 'Gorai.006G246600' => 'gra', 'Gorai.007G142900' => 'gra', 'Gorai.011G171000' => 'gra', 'Gorai.011G171100' => 'gra', 'Gorai.013G104300' => 'gra', 'Gorai.013G104400' => 'gra', 'GSVIVG01000754001' => 'vvi', 'GSVIVG01000756001' => 'vvi', 'GSVIVG01010903001' => 'vvi', 'GSVIVG01017623001' => 'vvi', 'GSVIVG01018113001' => 'vvi', 'GSVIVG01018116001' => 'vvi', 'GSVIVG01018118001' => 'vvi', 'HanXRQChr03g0076211' => 'han', 'HanXRQChr03g0092431' => 'han', 'HanXRQChr03g0092441' => 'han', 'HanXRQChr03g0092591' => 'han', 'HanXRQChr03g0092671' => 'han', 'HanXRQChr03g0092681' => 'han', 'HanXRQChr03g0092691' => 'han', 'HanXRQChr03g0092701' => 'han', 'HanXRQChr03g0092721' => 'han', 'HanXRQChr03g0092731' => 'han', 'HanXRQChr04g0113681' => 'han', 'HanXRQChr10g0281371' => 'han', 'HanXRQChr11g0337141' => 'han', 'HanXRQChr13g0424521' => 'han', 'HanXRQChr13g0424531' => 'han', 'HanXRQChr13g0424541' => 'han', 'HanXRQChr16g0498221' => 'han', 'Haze_04377' => 'cav', 'Haze_11298' => 'cav', 'Haze_24547' => 'cav', 'Haze_24550' => 'cav', 'Haze_26587' => 'cav', 'Hma1.2p1_0650F.1_g195410' => 'hma', 'Hma1.2p1_0893F.1_g233470' => 'hma', 'HPP92_006508' => 'vpl', 'HPP92_024780' => 'vpl', 'Hund02688' => 'sun', 'Hund09380' => 'sun', 'Hund09381' => 'sun', 'Hund09832' => 'sun', 'Hund09833' => 'sun', 'Hund11351' => 'sun', 'Hund11513' => 'sun', 'Lalb_Chr06g0162591' => 'lal', 'Lalb_Chr06g0162601' => 'lal', 'Lalb_Chr06g0169321' => 'lal', 'Lalb_Chr09g0330951' => 'lal', 'Lalb_Chr16g0387631' => 'lal', 'Lalb_Chr21g0306241' => 'lal', 'Lalb_Chr25g0290051' => 'lal', 'Lalb_Chr25g0290061' => 'lal', 'Lalb_Chr25g0290071' => 'lal', 'Lj1g0003876' => 'lja', 'Lj1P1207T36' => 'lonja', 'Lj2C1156G12' => 'lonja', 'Lj3A793G39' => 'lonja', 'Lj3C580G2' => 'lonja', 'Lj3C780G2' => 'lonja', 'Lj3C780T4' => 'lonja', 'Lj3C793G9' => 'lonja', 'Lj4g0012960' => 'lja', 'Lj5g0021252' => 'lja', 'Lj5g0021484' => 'lja', 'Lj5g0024528' => 'lja', 'Lj6A399T12' => 'lonja', 'Lj6A656G65' => 'lonja', 'Lsat_1_v5_gn_3_125500' => 'lsa', 'Lsat_1_v5_gn_3_125540' => 'lsa', 'Lsat_1_v5_gn_5_72701' => 'lsa', 'Lsat_1_v5_gn_8_91560' => 'lsa', 'Lsat_1_v5_gn_9_9640' => 'lsa', 'Manes.01G200600' => 'mes', 'Manes.01G200700' => 'mes', 'Manes.03G168900' => 'mes', 'Manes.03G169000' => 'mes', 'Manes.05G085801' => 'mes', 'Manes.05G086200' => 'mes', 'Manes.15G036700' => 'mes', 'Manes.15G036900' => 'mes', 'Mapoly0004s0172' => 'mpo', 'Mapoly0023s0001' => 'mpo', 'Mapoly0142s0012' => 'mpo', 'MBI01_g32854_MAGBIO' => 'mbi', 'MBI11_g24427_MAGBIO' => 'mbi', 'MBI11_g47319_MAGBIO' => 'mbi', 'MCO01G433' => 'mco', 'MD00G1187800' => 'mdo', 'MD04G1226500' => 'mdo', 'MD05G1203900' => 'mdo', 'MD10G1191100' => 'mdo', 'MD12G1243500' => 'mdo', 'MD13G1207000' => 'mdo', 'MD13G1207100' => 'mdo', 'MD16G1208600' => 'mdo', 'Medtr1g050352' => 'mtr', 'Medtr1g070385' => 'mtr', 'Medtr1g070450' => 'mtr', 'Medtr1g075200' => 'mtr', 'Medtr1g075250' => 'mtr', 'Medtr1g075260' => 'mtr', 'Medtr1g475250' => 'mtr', 'Medtr4g075450' => 'mtr', 'Medtr7g096300' => 'mtr', 'Medtr8g105110' => 'mtr', 'MELO3C006470.2' => 'cme', 'MELO3C006471.2' => 'cme', 'MELO3C020772.2' => 'cme', 'MELO3C026780.2' => 'cme', 'MELO3C026781.2' => 'cme', 'Migut.D00390' => 'egut', 'Migut.G00435' => 'egut', 'Migut.G00436' => 'egut', 'Migut.G00718' => 'egut', 'MSTRG.21891' => 'ama', 'MSTRG.26910' => 'ama', 'MSTRG.4099' => 'ama', 'MSTRG.9925' => 'ama', 'Nitab4.5_0000165g0010' => 'nta', 'Nitab4.5_0000209g0180' => 'nta', 'Nitab4.5_0000244g0440' => 'nta', 'Nitab4.5_0000525g0220' => 'nta', 'Nitab4.5_0001597g0020' => 'nta', 'Nitab4.5_0001878g0040' => 'nta', 'Nitab4.5_0001878g0060' => 'nta', 'Nitab4.5_0002838g0100' => 'nta', 'Nitab4.5_0002838g0120' => 'nta', 'Nitab4.5_0004798g0030' => 'nta', 'Nitab4.5_0005420g0010' => 'nta', 'Nitab4.5_0005507g0010' => 'nta', 'Nitab4.5_0005574g0020' => 'nta', 'Nitab4.5_0005838g0010' => 'nta', 'Nitab4.5_0010580g0020' => 'nta', 'Nn1g02599' => 'nnu', 'Nn1g02608' => 'nnu', 'Nn3g17742' => 'nnu', 'Nn3g19534' => 'nnu', 'Nn3g19535' => 'nnu', 'Oeu008790.1' => 'oeu', 'Oeu008792.1' => 'oeu', 'Oeu032590.1' => 'oeu', 'Oeu035349.1' => 'oeu', 'Oeu049791.1' => 'oeu', 'Os01g0774500' => 'osa', 'Os03g0628800' => 'osa', 'Os03g0798600' => 'osa', 'Os05g0508800' => 'osa', 'Peaxi162Scf00036g02018' => 'pax', 'Peaxi162Scf00578g00032' => 'pax', 'Peaxi162Scf00578g00317' => 'pax', 'Peaxi162Scf00785g00114' => 'pax', 'Peaxi162Scf00813g00119' => 'pax', 'Peaxi162Scf00906g00227' => 'pax', 'PGR004G0875' => 'pgr', 'PGR004G2424' => 'pgr', 'PGR031G1239' => 'pgr', 'PGR031G2474' => 'pgr', 'PGR044G0423' => 'pgr', 'PGSC0003DMG400001128' => 'stu', 'PGSC0003DMG400007336' => 'stu', 'PGSC0003DMG400016318' => 'stu', 'PGSC0003DMG400016319' => 'stu', 'PGSC0003DMG400018074' => 'stu', 'Phvul.001G157700' => 'pvu', 'Phvul.002G148550' => 'pvu', 'Phvul.002G320200' => 'pvu', 'Phvul.003G089200' => 'pvu', 'Phvul.007G126000' => 'pvu', 'Phvul.007G126100' => 'pvu', 'Phvul.007G178000' => 'pvu', 'Phvul.007G178200' => 'pvu', 'Potri.002G043000' => 'ptr', 'Potri.002G043200' => 'ptr', 'Potri.003G123750' => 'ptr', 'Potri.005G055401' => 'ptr', 'Potri.005G219700' => 'ptr', 'Potri.005G220000' => 'ptr', 'Potri.008G161901' => 'ptr', 'Potri.008G162000' => 'ptr', 'Potri.008G162400' => 'ptr', 'Potri.010G076900' => 'ptr', 'Pp3c12_9180' => 'ppa', 'Pp3c13_19770' => 'ppa', 'Pp3c14_22950' => 'ppa', 'Pp3c16_12160' => 'ppa', 'Pp3c27_7820' => 'ppa', 'Pp3c2_3490' => 'ppa', 'Pp3c3_23700' => 'ppa', 'Pp3c3_36520' => 'ppa', 'Pp3c4_15250' => 'ppa', 'PRCOL_00007002' => 'pco', 'Prupe.1G030600' => 'ppe', 'Prupe.1G030700' => 'ppe', 'Prupe.6G345200' => 'ppe', 'Prupe.8G230300' => 'ppe', 'Prupe.8G230500' => 'ppe', 'Psat3g059600' => 'psa', 'Psat5g200920' => 'psa', 'Psat6g056440' => 'psa', 'Psat6g057360' => 'psa', 'Psat6g134120' => 'psa', 'Psat6g134160' => 'psa', 'Psat7g008640' => 'psa', 'Psat7g185240' => 'psa', 'PSO017G1330' => 'pso', 'PSO063G6097' => 'pso', 'PSO170G0835' => 'pso', 'PSO170G2499' => 'pso', 'PSO210G5058' => 'pso', 'PSO210G6154' => 'pso', 'PSO585G0031' => 'pso', 'PSO832G0264' => 'pso', 'PSO832G4288' => 'pso', 'QL03p027355' => 'qlo', 'QL03p027430' => 'qlo', 'QL04p081380' => 'qlo', 'QL06p015642' => 'qlo', 'QL06p015650' => 'qlo', 'QL06p015686' => 'qlo', 'QL12p042927' => 'qlo', 'QL93p1863_0035' => 'qlo', 'RcHm_v2.0_Chr3g0450581' => 'rch', 'RcHm_v2.0_Chr4g0390371' => 'rch', 'RcHm_v2.0_Chr4g0390381' => 'rch', 'RcHm_v2.0_Chr4g0390491' => 'rch', 'RcHm_v2.0_Chr4g0390501' => 'rch', 'RcHm_v2.0_Chr6g0289231' => 'rch', 'Rhsim04G0190400' => 'rsi', 'Rhsim04G0190500' => 'rsi', 'Rhsim04G0190600' => 'rsi', 'Rhsim13G0031400' => 'rsi', 'Rhsim13G0165600' => 'rsi', 'RhsimUnG0114600' => 'rsi', 'RhsimUnG0114700' => 'rsi', 'Sabra02G0034800' => 'sbr', 'Sabra02G0035100' => 'sbr', 'Sabra05G0168600' => 'sbr', 'Sabra05G0168800' => 'sbr', 'Sabra08G0123700' => 'sbr', 'Sabra10G0031900' => 'sbr', 'Sabra13G0039000' => 'sbr', 'SalBow2G0782' => 'sbo', 'SalBow2G1403' => 'sbo', 'SalBow4G0074' => 'sbo', 'SalBow4G2635' => 'sbo', 'SalBow5G3010' => 'sbo', 'Sc05g0000870' => 'sci', 'Sc05g0000890' => 'sci', 'Sc13g0005000' => 'sci', 'Sc13g0005030' => 'sci', 'Sc19g0003790' => 'sci', 'Sc19g0003800' => 'sci', 'Sed0003467' => 'sed', 'Sed0009355' => 'sed', 'Sed0009894' => 'sed', 'Sed0011972' => 'sed', 'Sed0021483' => 'sed', 'Sed0021750' => 'sed', 'Sed0026279' => 'sed', 'SEGI_05312' => 'sgi', 'SEGI_10112' => 'sgi', 'SEGI_15835' => 'sgi', 'SEGI_30386' => 'sgi', 'SEGI_34122' => 'sgi', 'SEGI_35063' => 'sgi', 'SGA_v2.0_scaffold101G29794' => 'sas', 'SGA_v2.0_scaffold1G00573' => 'sas', 'SGA_v2.0_scaffold79G25637' => 'sas', 'SGA_v2.0_scaffold88G27283' => 'sas', 'SGA_v2.0_scaffold88G27285' => 'sas', 'SGA_v2.0_scaffold88G27331' => 'sas', 'SHI09937' => 'shi', 'SMO119G0302' => 'smo', 'SMO137G0231' => 'smo', 'SMO367G1151' => 'smo', 'Solyc02g082000.3' => 'sly', 'Solyc06g031670.3' => 'sly', 'Solyc06g053810.3' => 'sly', 'Solyc07g025457.1' => 'sly', 'Solyc08g059740.1' => 'sly', 'Solyc08g059750.3' => 'sly', 'Solyc09g083370.3' => 'sly', 'Solyc12g038950.3' => 'sly', 'Sopen02g026630' => 'spe', 'Sopen06g018930' => 'spe', 'Sopen06g018940' => 'spe', 'Sopen08g009460' => 'spe', 'Sopen09g032290' => 'spe', 'Sp1g03080' => 'spa', 'Sp1g03090' => 'spa', 'Sp1g05480' => 'spa', 'Sp2g07860' => 'spa', 'Sp2g08430' => 'spa', 'Sp2g08440' => 'spa', 'Sp2g26200' => 'spa', 'Sp4g13170' => 'spa', 'Sp6g33840' => 'spa', 'SpUn1204_0010' => 'spa', 'TAR365G0908' => 'tar', 'TAR381G1270' => 'tar', 'TAR381G1651' => 'tar', 'TAR625G1131' => 'tar', 'TAR633G0962' => 'tar', 'TAR633G1729' => 'tar', 'TAR633G1864' => 'tar', 'TAR636G0221' => 'tar', 'TAR636G0314' => 'tar', 'TAR636G3202' => 'tar', 'THA.LOC104800805' => 'tha', 'THA.LOC104801096' => 'tha', 'THA.LOC104801555' => 'tha', 'THA.LOC104808491' => 'tha', 'THA.LOC104808595' => 'tha', 'THA.LOC104815985' => 'tha', 'THA.LOC104822250' => 'tha', 'THA.LOC104826071' => 'tha', 'Thecc.01G265200' => 'tca', 'Thecc.01G265300' => 'tca', 'Thecc.01G265700' => 'tca', 'Thecc.03G109100' => 'tca', 'Thecc.04G245900' => 'tca', 'Thecc.04G246000' => 'tca', 'Thhalv10003334m.g' => 'esa', 'Thhalv10005508m.g' => 'esa', 'Thhalv10005643m.g' => 'esa', 'Thhalv10007316m.g' => 'esa', 'Thhalv10009006m.g' => 'esa', 'Thhalv10009309m.g' => 'esa', 'Thhalv10014917m.g' => 'esa', 'Thhalv10014919m.g' => 'esa', 'Thhalv10015393m.g' => 'esa', 'Thhalv10016515m.g' => 'esa', 'Thhalv10029242m.g' => 'esa', 'TPR.G16654' => 'tpr', 'TPR.G20589' => 'tpr', 'TPR.G23029' => 'tpr', 'TPR.G27731' => 'tpr', 'TPR.G28889' => 'tpr', 'TPR.G28899' => 'tpr', 'TPR.G30846' => 'tpr', 'TPR.G5452' => 'tpr', 'TPR.G5713' => 'tpr', 'TPR.G9046' => 'tpr', 'TPR.G9061' => 'tpr', 'TWI09G1075' => 'twi', 'TWI12G0806' => 'twi', 'TWI18G0108' => 'twi', 'TWI53G1361' => 'twi', 'TWI73G0185' => 'twi', 'TWI73G0427' => 'twi', 'unitig_37.g12001' => 'ugi', 'unitig_747.g21660' => 'ugi', 'unitig_748.g7232' => 'ugi', 'unitig_748.g7315' => 'ugi', 'unitig_85.g27262' => 'ugi', 'unitig_92.g28220' => 'ugi', 'vmacro02632' => 'vma', 'vmacro08410' => 'vma', 'vmacro08411' => 'vma', 'vmacro15407' => 'vma', 'VMungo0251G3619' => 'vmu', 'VMungo0720G1204' => 'vmu', 'VMungo0720G1918' => 'vmu', 'VMungo0720G2387' => 'vmu', 'VMungo0720G2961' => 'vmu', 'VMungo1215G2154' => 'vmu', 'VMungo1383G2411' => 'vmu', 'Zm00001eb051130' => 'zma', 'Zm00001eb116830' => 'zma', 'Zm00001eb116850' => 'zma', 'Zm00001eb151740' => 'zma', 'Zm00001eb292360' => 'zma', 'Zm00001eb301640' => 'zma' ), 'gf_id' => 'HOM05D000856', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000856' ), 'data_identifier' => 'HOM05D000856', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000856', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p00010' => 'bna', 'A03p04160' => 'bna', 'A03p17160' => 'bna', 'A04p23370' => 'bna', 'A05p14860' => 'bna', 'A08p37020' => 'bna', 'A09p08050' => 'bna', 'A09p66800' => 'bna', 'A09p67940' => 'bna', 'A10p02680' => 'bna', 'A10p05320' => 'bna', 'Aa31LG1G20560' => 'aar', 'Aa31LG1G20610' => 'aar', 'Aa31LG1G7810' => 'aar', 'Aa31LG5G3590' => 'aar', 'Aa31LG5G6140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3819' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4683' => 'aag', 'Actinidia04480' => 'ach', 'Actinidia05466' => 'ach', 'Actinidia08445' => 'ach', 'Actinidia21170' => 'ach', 'Actinidia24812' => 'ach', 'Actinidia24951' => 'ach', 'Actinidia40088' => 'ach', 'Ah.02g111660' => 'amhyb', 'Ah.11g048900' => 'amhyb', 'Ah.11g049910' => 'amhyb', 'AL1G13870' => 'aly', 'AL1G13880' => 'aly', 'AL1G16760' => 'aly', 'AL390U10020' => 'aly', 'AL4G25520' => 'aly', 'AL6G19890' => 'aly', 'AL6G19900' => 'aly', 'AL6G19910' => 'aly', 'AL8G40100' => 'aly', 'Aqoxy2G03562' => 'aox', 'Aqoxy5G00316' => 'aox', 'Aqoxy5G00926' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1628KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1H403S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2FU6SJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.882I6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8YRY2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YN1SN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AF70II' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZA8L1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F916KL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHRD8H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KTZ8QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S22EMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8M29T' => 'arhy', 'AT1G04270' => 'ath', 'AT1G04280' => 'ath', 'AT1G06750' => 'ath', 'AT1G33850' => 'ath', 'AT2G30630' => 'ath', 'AT5G09490' => 'ath', 'AT5G09500' => 'ath', 'AT5G09510' => 'ath', 'AT5G43640' => 'ath', 'AT5G63070' => 'ath', 'ATR0605G315' => 'atr', 'Atru.chr11.175' => 'acertr', 'Atru.chr11.653' => 'acertr', 'Atru.chr3.1616' => 'acertr', 'Atru.chr4.2230' => 'acertr', 'Atru.chr4.2232' => 'acertr', 'Atru.chr5.1598' => 'acertr', 'Atru.chr5.1600' => 'acertr', 'Atru.chr5.2188' => 'acertr', 'AUR62008326' => 'cqu', 'AUR62011922' => 'cqu', 'AUR62011924' => 'cqu', 'AUR62021771' => 'cqu', 'AUR62032237' => 'cqu', 'AUR62032240' => 'cqu', 'BcaB01g05572' => 'bca', 'BcaB02g10337' => 'bca', 'BcaB04g19944' => 'bca', 'BcaB05g21548' => 'bca', 'BcaB05g21549' => 'bca', 'BcaB05g23227' => 'bca', 'BcaB06g26256' => 'bca', 'BcaB06g26257' => 'bca', 'BcaB06g28379' => 'bca', 'BcaC02g11159' => 'bca', 'BcaC03g13258' => 'bca', 'BcaC03g13259' => 'bca', 'BcaC05g24456' => 'bca', 'BcaC05g24457' => 'bca', 'BcaC07g36922' => 'bca', 'BcaC07g36923' => 'bca', 'BcaC07g42050' => 'bca', 'BcaC07g42176' => 'bca', 'BcaC07g42195' => 'bca', 'BcaC07g42196' => 'bca', 'BcaNung06674' => 'bca', 'BolC2t06351H' => 'bol', 'BolC2t06352H' => 'bol', 'BolC3t12993H' => 'bol', 'BolC4t23525H' => 'bol', 'BolC4t27475H' => 'bol', 'BolC5t29025H' => 'bol', 'BolC5t29026H' => 'bol', 'BolC8t46898H' => 'bol', 'BolC8t46899H' => 'bol', 'BolC8t52630H' => 'bol', 'BolC8t52765H' => 'bol', 'BolC9t53824H' => 'bol', 'BraA03t09760Z' => 'bra', 'BraA03t10990Z' => 'bra', 'BraA05t20413Z' => 'bra', 'BraA08t35602Z' => 'bra', 'BraA09t36458Z' => 'bra', 'BraA09t42018Z' => 'bra', 'BraA09t42129Z' => 'bra', 'BraA10t42536Z' => 'bra', 'BraA10t42537Z' => 'bra', 'C01p10690' => 'bna', 'C02p03890' => 'bna', 'C02p03900' => 'bna', 'C03p04620' => 'bna', 'C04p19870' => 'bna', 'C04p59670' => 'bna', 'C05p02460' => 'bna', 'C05p02470' => 'bna', 'C08p00980' => 'bna', 'C08p00990' => 'bna', 'C08p51030' => 'bna', 'C08p52360' => 'bna', 'C09p09120' => 'bna', 'CAN.G19.15' => 'can', 'CAN.G251.10' => 'can', 'CAN.G251.9' => 'can', 'CAN.G398.24' => 'can', 'CAN.G410.32' => 'can', 'CAN.G881.2' => 'can', 'CANSAT01G3025' => 'cansat', 'CANSAT78G1211' => 'cansat', 'CANSAT78G1218' => 'cansat', 'CANSAT78G1521' => 'cansat', 'CANSAT78G1670' => 'cansat', 'CARHR003600' => 'chi', 'CARHR003610' => 'chi', 'CARHR006290' => 'chi', 'CARHR006430' => 'chi', 'CARHR124110' => 'chi', 'CARHR203870' => 'chi', 'CARHR203880' => 'chi', 'CARHR203890' => 'chi', 'CARHR276880' => 'chi', 'Carub.0001s0346' => 'cru', 'Carub.0001s0347' => 'cru', 'Carub.0001s0607' => 'cru', 'Carub.0003s2768' => 'cru', 'Carub.0003s2769' => 'cru', 'Carub.0004s1178' => 'cru', 'Carub.0006s0806' => 'cru', 'Carub.0006s0807' => 'cru', 'Carub.0006s0808' => 'cru', 'Carub.0008s0501' => 'cru', 'Carub.0008s2379' => 'cru', 'Ca_08655_v3' => 'car', 'Ca_08922_v3' => 'car', 'Ca_08923_v3' => 'car', 'Ca_09119_v3' => 'car', 'Ca_09703_v3' => 'car', 'Ca_09705_v3' => 'car', 'Ca_09835_v3' => 'car', 'Ca_26403_v3' => 'car', 'Ca_30719_v3' => 'car', 'CBR_g17958' => 'cbr', 'CBR_g40516' => 'cbr', 'Cc00_g05350' => 'ccan', 'Cc01_g18690' => 'ccan', 'Cc03_g04830' => 'ccan', 'Cc03_g04850' => 'ccan', 'CDE02G4469' => 'cde', 'CDE06G0883' => 'cde', 'CDE06G1295' => 'cde', 'CDE06G1390' => 'cde', 'CDE07G0584' => 'cde', 'CDE07G1084' => 'cde', 'CDE08G1259' => 'cde', 'Cfa002341' => 'cfa', 'Cfa024337' => 'cfa', 'Ciclev10004749m.g' => 'ccl', 'Ciclev10006127m.g' => 'ccl', 'Ciclev10019720m.g' => 'ccl', 'Ciclev10022652m.g' => 'ccl', 'CiPaw.01G190400' => 'cil', 'CiPaw.01G190500' => 'cil', 'CiPaw.02G116400' => 'cil', 'CiPaw.02G116500' => 'cil', 'CiPaw.04G183000' => 'cil', 'CiPaw.04G183300' => 'cil', 'ClCG05G004610' => 'cla', 'ClCG05G004620' => 'cla', 'ClCG06G006730' => 'cla', 'ClCG06G006740' => 'cla', 'ClCG11G003690' => 'cla', 'COL.COLO4_08276' => 'col', 'COL.COLO4_08277' => 'col', 'COL.COLO4_15787' => 'col', 'COL.COLO4_15789' => 'col', 'Cpa.g.c44815' => 'cpa', 'Cpa.g.sc52.144' => 'cpa', 'Cpa.g.sc58.46' => 'cpa', 'Cpa.g.sc58.47' => 'cpa', 'Cre08.g360900' => 'cre', 'CsaV3_2G013030' => 'csa', 'CsaV3_2G013050' => 'csa', 'CsaV3_2G015620' => 'csa', 'CsaV3_3G012590' => 'csa', 'CsaV3_3G012600' => 'csa', 'CSS0001641' => 'camsi', 'CSS0008310' => 'camsi', 'CSS0013011' => 'camsi', 'CSS0017147' => 'camsi', 'CSS0022970' => 'camsi', 'CSS0025655' => 'camsi', 'CSS0028665' => 'camsi', 'CSS0029117' => 'camsi', 'CSS0032024' => 'camsi', 'CSS0039681' => 'camsi', 'CSS0046516' => 'camsi', 'CSS0050307' => 'camsi', 'DCAR_005871' => 'dca', 'DCAR_007342' => 'dca', 'DCAR_024228' => 'dca', 'DCAR_027277' => 'dca', 'DCAR_030718' => 'dca', 'Dinv20287' => 'din', 'Dinv22461' => 'din', 'Dinv22464' => 'din', 'Dinv29912' => 'din', 'Dinv29913' => 'din', 'Dinv34580' => 'din', 'Dinv34582' => 'din', 'Dinv44632' => 'din', 'Duzib052G0266' => 'dzi', 'Duzib133G0907' => 'dzi', 'Duzib133G1034' => 'dzi', 'Duzib138G0207' => 'dzi', 'Duzib138G0491' => 'dzi', 'Duzib151G0812' => 'dzi', 'Duzib151G1166' => 'dzi', 'Duzib168G0192' => 'dzi', 'Duzib211G0077' => 'dzi', 'Duzib212G0429' => 'dzi', 'Duzib212G0472' => 'dzi', 'ECA233G2617' => 'eca', 'ECA236G4188' => 'eca', 'ECA240G0936' => 'eca', 'ECA240G1129' => 'eca', 'ECA247G0623' => 'eca', 'EL10Ac5g10451' => 'bvu', 'EL10Ac5g10453' => 'bvu', 'EL10Ac5g10894' => 'bvu', 'Eucgr.H00192' => 'egr', 'Eucgr.H00193' => 'egr', 'Eucgr.H00194' => 'egr', 'Eucgr.J01562' => 'egr', 'Eucgr.K03301' => 'egr', 'FAN02G0632' => 'fan', 'FAN05G5378' => 'fan', 'FAN09G3247' => 'fan', 'FAN12G0435' => 'fan', 'FAN12G2426' => 'fan', 'FAN14G1707' => 'fan', 'FAN14G4725' => 'fan', 'FAN15G2071' => 'fan', 'FAN17G3065' => 'fan', 'FAN19G1376' => 'fan', 'FAN20G0354' => 'fan', 'FAN20G2429' => 'fan', 'FAN20G2658' => 'fan', 'FAN24G2343' => 'fan', 'FAN27G2362' => 'fan', 'FAN28G1765' => 'fan', 'FvH4_1g16020' => 'fve', 'FvH4_2g04890' => 'fve', 'FvH4_2g22270' => 'fve', 'FvH4_4g02630' => 'fve', 'FvH4_4g02640' => 'fve', 'FvH4_6g02650' => 'fve', 'Glyma.02G140600' => 'gma', 'Glyma.03G159900' => 'gma', 'Glyma.05G234800' => 'gma', 'Glyma.07G269600' => 'gma', 'Glyma.08G042300' => 'gma', 'Glyma.10G033500' => 'gma', 'Glyma.10G185200' => 'gma', 'Glyma.17G004300' => 'gma', 'Glyma.19G161900' => 'gma', 'Glyma.20G205100' => 'gma', 'Glyma.20G205200' => 'gma', 'Gohir.A01G139101' => 'ghi', 'Gohir.A02G035600' => 'ghi', 'Gohir.A02G117901' => 'ghi', 'Gohir.A07G210100' => 'ghi', 'Gohir.A07G210200' => 'ghi', 'Gohir.A08G061100' => 'ghi', 'Gohir.A09G223000' => 'ghi', 'Gohir.A09G223100' => 'ghi', 'Gohir.A10G113900' => 'ghi', 'Gohir.A10G114000' => 'ghi', 'Gohir.D02G042300' => 'ghi', 'Gohir.D07G216100' => 'ghi', 'Gohir.D07G216200' => 'ghi', 'Gohir.D08G070400' => 'ghi', 'Gohir.D09G225000' => 'ghi', 'Gohir.D09G225100' => 'ghi', 'Gohir.D10G152300' => 'ghi', 'Gohir.D10G153200' => 'ghi', 'Gohir.D11G133701' => 'ghi', 'Gorai.004G074100' => 'gra', 'Gorai.005G046800' => 'gra', 'Gorai.006G246500' => 'gra', 'Gorai.006G246600' => 'gra', 'Gorai.007G142900' => 'gra', 'Gorai.011G171000' => 'gra', 'Gorai.011G171100' => 'gra', 'Gorai.013G104300' => 'gra', 'Gorai.013G104400' => 'gra', 'GSVIVG01000754001' => 'vvi', 'GSVIVG01000756001' => 'vvi', 'GSVIVG01010903001' => 'vvi', 'GSVIVG01017623001' => 'vvi', 'GSVIVG01018113001' => 'vvi', 'GSVIVG01018116001' => 'vvi', 'GSVIVG01018118001' => 'vvi', 'HanXRQChr03g0076211' => 'han', 'HanXRQChr03g0092431' => 'han', 'HanXRQChr03g0092441' => 'han', 'HanXRQChr03g0092591' => 'han', 'HanXRQChr03g0092671' => 'han', 'HanXRQChr03g0092681' => 'han', 'HanXRQChr03g0092691' => 'han', 'HanXRQChr03g0092701' => 'han', 'HanXRQChr03g0092721' => 'han', 'HanXRQChr03g0092731' => 'han', 'HanXRQChr04g0113681' => 'han', 'HanXRQChr10g0281371' => 'han', 'HanXRQChr11g0337141' => 'han', 'HanXRQChr13g0424521' => 'han', 'HanXRQChr13g0424531' => 'han', 'HanXRQChr13g0424541' => 'han', 'HanXRQChr16g0498221' => 'han', 'Haze_04377' => 'cav', 'Haze_11298' => 'cav', 'Haze_24547' => 'cav', 'Haze_24550' => 'cav', 'Haze_26587' => 'cav', 'Hma1.2p1_0650F.1_g195410' => 'hma', 'Hma1.2p1_0893F.1_g233470' => 'hma', 'HPP92_006508' => 'vpl', 'HPP92_024780' => 'vpl', 'Hund02688' => 'sun', 'Hund09380' => 'sun', 'Hund09381' => 'sun', 'Hund09832' => 'sun', 'Hund09833' => 'sun', 'Hund11351' => 'sun', 'Hund11513' => 'sun', 'Lalb_Chr06g0162591' => 'lal', 'Lalb_Chr06g0162601' => 'lal', 'Lalb_Chr06g0169321' => 'lal', 'Lalb_Chr09g0330951' => 'lal', 'Lalb_Chr16g0387631' => 'lal', 'Lalb_Chr21g0306241' => 'lal', 'Lalb_Chr25g0290051' => 'lal', 'Lalb_Chr25g0290061' => 'lal', 'Lalb_Chr25g0290071' => 'lal', 'Lj1g0003876' => 'lja', 'Lj1P1207T36' => 'lonja', 'Lj2C1156G12' => 'lonja', 'Lj3A793G39' => 'lonja', 'Lj3C580G2' => 'lonja', 'Lj3C780G2' => 'lonja', 'Lj3C780T4' => 'lonja', 'Lj3C793G9' => 'lonja', 'Lj4g0012960' => 'lja', 'Lj5g0021252' => 'lja', 'Lj5g0021484' => 'lja', 'Lj5g0024528' => 'lja', 'Lj6A399T12' => 'lonja', 'Lj6A656G65' => 'lonja', 'Lsat_1_v5_gn_3_125500' => 'lsa', 'Lsat_1_v5_gn_3_125540' => 'lsa', 'Lsat_1_v5_gn_5_72701' => 'lsa', 'Lsat_1_v5_gn_8_91560' => 'lsa', 'Lsat_1_v5_gn_9_9640' => 'lsa', 'Manes.01G200600' => 'mes', 'Manes.01G200700' => 'mes', 'Manes.03G168900' => 'mes', 'Manes.03G169000' => 'mes', 'Manes.05G085801' => 'mes', 'Manes.05G086200' => 'mes', 'Manes.15G036700' => 'mes', 'Manes.15G036900' => 'mes', 'Mapoly0004s0172' => 'mpo', 'Mapoly0023s0001' => 'mpo', 'Mapoly0142s0012' => 'mpo', 'MBI01_g32854_MAGBIO' => 'mbi', 'MBI11_g24427_MAGBIO' => 'mbi', 'MBI11_g47319_MAGBIO' => 'mbi', 'MCO01G433' => 'mco', 'MD00G1187800' => 'mdo', 'MD04G1226500' => 'mdo', 'MD05G1203900' => 'mdo', 'MD10G1191100' => 'mdo', 'MD12G1243500' => 'mdo', 'MD13G1207000' => 'mdo', 'MD13G1207100' => 'mdo', 'MD16G1208600' => 'mdo', 'Medtr1g050352' => 'mtr', 'Medtr1g070385' => 'mtr', 'Medtr1g070450' => 'mtr', 'Medtr1g075200' => 'mtr', 'Medtr1g075250' => 'mtr', 'Medtr1g075260' => 'mtr', 'Medtr1g475250' => 'mtr', 'Medtr4g075450' => 'mtr', 'Medtr7g096300' => 'mtr', 'Medtr8g105110' => 'mtr', 'MELO3C006470.2' => 'cme', 'MELO3C006471.2' => 'cme', 'MELO3C020772.2' => 'cme', 'MELO3C026780.2' => 'cme', 'MELO3C026781.2' => 'cme', 'Migut.D00390' => 'egut', 'Migut.G00435' => 'egut', 'Migut.G00436' => 'egut', 'Migut.G00718' => 'egut', 'MSTRG.21891' => 'ama', 'MSTRG.26910' => 'ama', 'MSTRG.4099' => 'ama', 'MSTRG.9925' => 'ama', 'Nitab4.5_0000165g0010' => 'nta', 'Nitab4.5_0000209g0180' => 'nta', 'Nitab4.5_0000244g0440' => 'nta', 'Nitab4.5_0000525g0220' => 'nta', 'Nitab4.5_0001597g0020' => 'nta', 'Nitab4.5_0001878g0040' => 'nta', 'Nitab4.5_0001878g0060' => 'nta', 'Nitab4.5_0002838g0100' => 'nta', 'Nitab4.5_0002838g0120' => 'nta', 'Nitab4.5_0004798g0030' => 'nta', 'Nitab4.5_0005420g0010' => 'nta', 'Nitab4.5_0005507g0010' => 'nta', 'Nitab4.5_0005574g0020' => 'nta', 'Nitab4.5_0005838g0010' => 'nta', 'Nitab4.5_0010580g0020' => 'nta', 'Nn1g02599' => 'nnu', 'Nn1g02608' => 'nnu', 'Nn3g17742' => 'nnu', 'Nn3g19534' => 'nnu', 'Nn3g19535' => 'nnu', 'Oeu008790.1' => 'oeu', 'Oeu008792.1' => 'oeu', 'Oeu032590.1' => 'oeu', 'Oeu035349.1' => 'oeu', 'Oeu049791.1' => 'oeu', 'Os01g0774500' => 'osa', 'Os03g0628800' => 'osa', 'Os03g0798600' => 'osa', 'Os05g0508800' => 'osa', 'Peaxi162Scf00036g02018' => 'pax', 'Peaxi162Scf00578g00032' => 'pax', 'Peaxi162Scf00578g00317' => 'pax', 'Peaxi162Scf00785g00114' => 'pax', 'Peaxi162Scf00813g00119' => 'pax', 'Peaxi162Scf00906g00227' => 'pax', 'PGR004G0875' => 'pgr', 'PGR004G2424' => 'pgr', 'PGR031G1239' => 'pgr', 'PGR031G2474' => 'pgr', 'PGR044G0423' => 'pgr', 'PGSC0003DMG400001128' => 'stu', 'PGSC0003DMG400007336' => 'stu', 'PGSC0003DMG400016318' => 'stu', 'PGSC0003DMG400016319' => 'stu', 'PGSC0003DMG400018074' => 'stu', 'Phvul.001G157700' => 'pvu', 'Phvul.002G148550' => 'pvu', 'Phvul.002G320200' => 'pvu', 'Phvul.003G089200' => 'pvu', 'Phvul.007G126000' => 'pvu', 'Phvul.007G126100' => 'pvu', 'Phvul.007G178000' => 'pvu', 'Phvul.007G178200' => 'pvu', 'Potri.002G043000' => 'ptr', 'Potri.002G043200' => 'ptr', 'Potri.003G123750' => 'ptr', 'Potri.005G055401' => 'ptr', 'Potri.005G219700' => 'ptr', 'Potri.005G220000' => 'ptr', 'Potri.008G161901' => 'ptr', 'Potri.008G162000' => 'ptr', 'Potri.008G162400' => 'ptr', 'Potri.010G076900' => 'ptr', 'Pp3c12_9180' => 'ppa', 'Pp3c13_19770' => 'ppa', 'Pp3c14_22950' => 'ppa', 'Pp3c16_12160' => 'ppa', 'Pp3c27_7820' => 'ppa', 'Pp3c2_3490' => 'ppa', 'Pp3c3_23700' => 'ppa', 'Pp3c3_36520' => 'ppa', 'Pp3c4_15250' => 'ppa', 'PRCOL_00007002' => 'pco', 'Prupe.1G030600' => 'ppe', 'Prupe.1G030700' => 'ppe', 'Prupe.6G345200' => 'ppe', 'Prupe.8G230300' => 'ppe', 'Prupe.8G230500' => 'ppe', 'Psat3g059600' => 'psa', 'Psat5g200920' => 'psa', 'Psat6g056440' => 'psa', 'Psat6g057360' => 'psa', 'Psat6g134120' => 'psa', 'Psat6g134160' => 'psa', 'Psat7g008640' => 'psa', 'Psat7g185240' => 'psa', 'PSO017G1330' => 'pso', 'PSO063G6097' => 'pso', 'PSO170G0835' => 'pso', 'PSO170G2499' => 'pso', 'PSO210G5058' => 'pso', 'PSO210G6154' => 'pso', 'PSO585G0031' => 'pso', 'PSO832G0264' => 'pso', 'PSO832G4288' => 'pso', 'QL03p027355' => 'qlo', 'QL03p027430' => 'qlo', 'QL04p081380' => 'qlo', 'QL06p015642' => 'qlo', 'QL06p015650' => 'qlo', 'QL06p015686' => 'qlo', 'QL12p042927' => 'qlo', 'QL93p1863_0035' => 'qlo', 'RcHm_v2.0_Chr3g0450581' => 'rch', 'RcHm_v2.0_Chr4g0390371' => 'rch', 'RcHm_v2.0_Chr4g0390381' => 'rch', 'RcHm_v2.0_Chr4g0390491' => 'rch', 'RcHm_v2.0_Chr4g0390501' => 'rch', 'RcHm_v2.0_Chr6g0289231' => 'rch', 'Rhsim04G0190400' => 'rsi', 'Rhsim04G0190500' => 'rsi', 'Rhsim04G0190600' => 'rsi', 'Rhsim13G0031400' => 'rsi', 'Rhsim13G0165600' => 'rsi', 'RhsimUnG0114600' => 'rsi', 'RhsimUnG0114700' => 'rsi', 'Sabra02G0034800' => 'sbr', 'Sabra02G0035100' => 'sbr', 'Sabra05G0168600' => 'sbr', 'Sabra05G0168800' => 'sbr', 'Sabra08G0123700' => 'sbr', 'Sabra10G0031900' => 'sbr', 'Sabra13G0039000' => 'sbr', 'SalBow2G0782' => 'sbo', 'SalBow2G1403' => 'sbo', 'SalBow4G0074' => 'sbo', 'SalBow4G2635' => 'sbo', 'SalBow5G3010' => 'sbo', 'Sc05g0000870' => 'sci', 'Sc05g0000890' => 'sci', 'Sc13g0005000' => 'sci', 'Sc13g0005030' => 'sci', 'Sc19g0003790' => 'sci', 'Sc19g0003800' => 'sci', 'Sed0003467' => 'sed', 'Sed0009355' => 'sed', 'Sed0009894' => 'sed', 'Sed0011972' => 'sed', 'Sed0021483' => 'sed', 'Sed0021750' => 'sed', 'Sed0026279' => 'sed', 'SEGI_05312' => 'sgi', 'SEGI_10112' => 'sgi', 'SEGI_15835' => 'sgi', 'SEGI_30386' => 'sgi', 'SEGI_34122' => 'sgi', 'SEGI_35063' => 'sgi', 'SGA_v2.0_scaffold101G29794' => 'sas', 'SGA_v2.0_scaffold1G00573' => 'sas', 'SGA_v2.0_scaffold79G25637' => 'sas', 'SGA_v2.0_scaffold88G27283' => 'sas', 'SGA_v2.0_scaffold88G27285' => 'sas', 'SGA_v2.0_scaffold88G27331' => 'sas', 'SHI09937' => 'shi', 'SMO119G0302' => 'smo', 'SMO137G0231' => 'smo', 'SMO367G1151' => 'smo', 'Solyc02g082000.3' => 'sly', 'Solyc06g031670.3' => 'sly', 'Solyc06g053810.3' => 'sly', 'Solyc07g025457.1' => 'sly', 'Solyc08g059740.1' => 'sly', 'Solyc08g059750.3' => 'sly', 'Solyc09g083370.3' => 'sly', 'Solyc12g038950.3' => 'sly', 'Sopen02g026630' => 'spe', 'Sopen06g018930' => 'spe', 'Sopen06g018940' => 'spe', 'Sopen08g009460' => 'spe', 'Sopen09g032290' => 'spe', 'Sp1g03080' => 'spa', 'Sp1g03090' => 'spa', 'Sp1g05480' => 'spa', 'Sp2g07860' => 'spa', 'Sp2g08430' => 'spa', 'Sp2g08440' => 'spa', 'Sp2g26200' => 'spa', 'Sp4g13170' => 'spa', 'Sp6g33840' => 'spa', 'SpUn1204_0010' => 'spa', 'TAR365G0908' => 'tar', 'TAR381G1270' => 'tar', 'TAR381G1651' => 'tar', 'TAR625G1131' => 'tar', 'TAR633G0962' => 'tar', 'TAR633G1729' => 'tar', 'TAR633G1864' => 'tar', 'TAR636G0221' => 'tar', 'TAR636G0314' => 'tar', 'TAR636G3202' => 'tar', 'THA.LOC104800805' => 'tha', 'THA.LOC104801096' => 'tha', 'THA.LOC104801555' => 'tha', 'THA.LOC104808491' => 'tha', 'THA.LOC104808595' => 'tha', 'THA.LOC104815985' => 'tha', 'THA.LOC104822250' => 'tha', 'THA.LOC104826071' => 'tha', 'Thecc.01G265200' => 'tca', 'Thecc.01G265300' => 'tca', 'Thecc.01G265700' => 'tca', 'Thecc.03G109100' => 'tca', 'Thecc.04G245900' => 'tca', 'Thecc.04G246000' => 'tca', 'Thhalv10003334m.g' => 'esa', 'Thhalv10005508m.g' => 'esa', 'Thhalv10005643m.g' => 'esa', 'Thhalv10007316m.g' => 'esa', 'Thhalv10009006m.g' => 'esa', 'Thhalv10009309m.g' => 'esa', 'Thhalv10014917m.g' => 'esa', 'Thhalv10014919m.g' => 'esa', 'Thhalv10015393m.g' => 'esa', 'Thhalv10016515m.g' => 'esa', 'Thhalv10029242m.g' => 'esa', 'TPR.G16654' => 'tpr', 'TPR.G20589' => 'tpr', 'TPR.G23029' => 'tpr', 'TPR.G27731' => 'tpr', 'TPR.G28889' => 'tpr', 'TPR.G28899' => 'tpr', 'TPR.G30846' => 'tpr', 'TPR.G5452' => 'tpr', 'TPR.G5713' => 'tpr', 'TPR.G9046' => 'tpr', 'TPR.G9061' => 'tpr', 'TWI09G1075' => 'twi', 'TWI12G0806' => 'twi', 'TWI18G0108' => 'twi', 'TWI53G1361' => 'twi', 'TWI73G0185' => 'twi', 'TWI73G0427' => 'twi', 'unitig_37.g12001' => 'ugi', 'unitig_747.g21660' => 'ugi', 'unitig_748.g7232' => 'ugi', 'unitig_748.g7315' => 'ugi', 'unitig_85.g27262' => 'ugi', 'unitig_92.g28220' => 'ugi', 'vmacro02632' => 'vma', 'vmacro08410' => 'vma', 'vmacro08411' => 'vma', 'vmacro15407' => 'vma', 'VMungo0251G3619' => 'vmu', 'VMungo0720G1204' => 'vmu', 'VMungo0720G1918' => 'vmu', 'VMungo0720G2387' => 'vmu', 'VMungo0720G2961' => 'vmu', 'VMungo1215G2154' => 'vmu', 'VMungo1383G2411' => 'vmu', 'Zm00001eb051130' => 'zma', 'Zm00001eb116830' => 'zma', 'Zm00001eb116850' => 'zma', 'Zm00001eb151740' => 'zma', 'Zm00001eb292360' => 'zma', 'Zm00001eb301640' => 'zma' ) $gf_id = 'HOM05D000856' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000856' ) $data_identifier = 'HOM05D000856' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 13, 'ath' => (int) 10, 'atr' => (int) 1, 'acertr' => (int) 8, 'cqu' => (int) 6, 'bca' => (int) 21, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 11, 'car' => (int) 9, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 8, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 5, 'fan' => (int) 16, 'fve' => (int) 6, 'gma' => (int) 11, 'ghi' => (int) 19, 'gra' => (int) 9, 'vvi' => (int) 7, 'han' => (int) 17, 'cav' => (int) 5, 'hma' => (int) 2, 'vpl' => (int) 2, 'sun' => (int) 7, 'lal' => (int) 9, 'lja' => (int) 5, 'lonja' => (int) 9, 'lsa' => (int) 5, 'mes' => (int) 8, 'mpo' => (int) 3, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 10, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 15, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 9, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 9, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 6, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 5, 'spa' => (int) 10, 'tar' => (int) 10, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 11, 'tpr' => (int) 11, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 4, 'vmu' => (int) 7, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb301640' $species_info = array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ) $local_species = 'ama' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000856', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p00010' => 'bna', 'A03p04160' => 'bna', 'A03p17160' => 'bna', 'A04p23370' => 'bna', 'A05p14860' => 'bna', 'A08p37020' => 'bna', 'A09p08050' => 'bna', 'A09p66800' => 'bna', 'A09p67940' => 'bna', 'A10p02680' => 'bna', 'A10p05320' => 'bna', 'Aa31LG1G20560' => 'aar', 'Aa31LG1G20610' => 'aar', 'Aa31LG1G7810' => 'aar', 'Aa31LG5G3590' => 'aar', 'Aa31LG5G6140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3819' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4683' => 'aag', 'Actinidia04480' => 'ach', 'Actinidia05466' => 'ach', 'Actinidia08445' => 'ach', 'Actinidia21170' => 'ach', 'Actinidia24812' => 'ach', 'Actinidia24951' => 'ach', 'Actinidia40088' => 'ach', 'Ah.02g111660' => 'amhyb', 'Ah.11g048900' => 'amhyb', 'Ah.11g049910' => 'amhyb', 'AL1G13870' => 'aly', 'AL1G13880' => 'aly', 'AL1G16760' => 'aly', 'AL390U10020' => 'aly', 'AL4G25520' => 'aly', 'AL6G19890' => 'aly', 'AL6G19900' => 'aly', 'AL6G19910' => 'aly', 'AL8G40100' => 'aly', 'Aqoxy2G03562' => 'aox', 'Aqoxy5G00316' => 'aox', 'Aqoxy5G00926' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1628KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1H403S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2FU6SJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.882I6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8YRY2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YN1SN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AF70II' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZA8L1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F916KL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHRD8H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KTZ8QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S22EMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8M29T' => 'arhy', 'AT1G04270' => 'ath', 'AT1G04280' => 'ath', 'AT1G06750' => 'ath', 'AT1G33850' => 'ath', 'AT2G30630' => 'ath', 'AT5G09490' => 'ath', 'AT5G09500' => 'ath', 'AT5G09510' => 'ath', 'AT5G43640' => 'ath', 'AT5G63070' => 'ath', 'ATR0605G315' => 'atr', 'Atru.chr11.175' => 'acertr', 'Atru.chr11.653' => 'acertr', 'Atru.chr3.1616' => 'acertr', 'Atru.chr4.2230' => 'acertr', 'Atru.chr4.2232' => 'acertr', 'Atru.chr5.1598' => 'acertr', 'Atru.chr5.1600' => 'acertr', 'Atru.chr5.2188' => 'acertr', 'AUR62008326' => 'cqu', 'AUR62011922' => 'cqu', 'AUR62011924' => 'cqu', 'AUR62021771' => 'cqu', 'AUR62032237' => 'cqu', 'AUR62032240' => 'cqu', 'BcaB01g05572' => 'bca', 'BcaB02g10337' => 'bca', 'BcaB04g19944' => 'bca', 'BcaB05g21548' => 'bca', 'BcaB05g21549' => 'bca', 'BcaB05g23227' => 'bca', 'BcaB06g26256' => 'bca', 'BcaB06g26257' => 'bca', 'BcaB06g28379' => 'bca', 'BcaC02g11159' => 'bca', 'BcaC03g13258' => 'bca', 'BcaC03g13259' => 'bca', 'BcaC05g24456' => 'bca', 'BcaC05g24457' => 'bca', 'BcaC07g36922' => 'bca', 'BcaC07g36923' => 'bca', 'BcaC07g42050' => 'bca', 'BcaC07g42176' => 'bca', 'BcaC07g42195' => 'bca', 'BcaC07g42196' => 'bca', 'BcaNung06674' => 'bca', 'BolC2t06351H' => 'bol', 'BolC2t06352H' => 'bol', 'BolC3t12993H' => 'bol', 'BolC4t23525H' => 'bol', 'BolC4t27475H' => 'bol', 'BolC5t29025H' => 'bol', 'BolC5t29026H' => 'bol', 'BolC8t46898H' => 'bol', 'BolC8t46899H' => 'bol', 'BolC8t52630H' => 'bol', 'BolC8t52765H' => 'bol', 'BolC9t53824H' => 'bol', 'BraA03t09760Z' => 'bra', 'BraA03t10990Z' => 'bra', 'BraA05t20413Z' => 'bra', 'BraA08t35602Z' => 'bra', 'BraA09t36458Z' => 'bra', 'BraA09t42018Z' => 'bra', 'BraA09t42129Z' => 'bra', 'BraA10t42536Z' => 'bra', 'BraA10t42537Z' => 'bra', 'C01p10690' => 'bna', 'C02p03890' => 'bna', 'C02p03900' => 'bna', 'C03p04620' => 'bna', 'C04p19870' => 'bna', 'C04p59670' => 'bna', 'C05p02460' => 'bna', 'C05p02470' => 'bna', 'C08p00980' => 'bna', 'C08p00990' => 'bna', 'C08p51030' => 'bna', 'C08p52360' => 'bna', 'C09p09120' => 'bna', 'CAN.G19.15' => 'can', 'CAN.G251.10' => 'can', 'CAN.G251.9' => 'can', 'CAN.G398.24' => 'can', 'CAN.G410.32' => 'can', 'CAN.G881.2' => 'can', 'CANSAT01G3025' => 'cansat', 'CANSAT78G1211' => 'cansat', 'CANSAT78G1218' => 'cansat', 'CANSAT78G1521' => 'cansat', 'CANSAT78G1670' => 'cansat', 'CARHR003600' => 'chi', 'CARHR003610' => 'chi', 'CARHR006290' => 'chi', 'CARHR006430' => 'chi', 'CARHR124110' => 'chi', 'CARHR203870' => 'chi', 'CARHR203880' => 'chi', 'CARHR203890' => 'chi', 'CARHR276880' => 'chi', 'Carub.0001s0346' => 'cru', 'Carub.0001s0347' => 'cru', 'Carub.0001s0607' => 'cru', 'Carub.0003s2768' => 'cru', 'Carub.0003s2769' => 'cru', 'Carub.0004s1178' => 'cru', 'Carub.0006s0806' => 'cru', 'Carub.0006s0807' => 'cru', 'Carub.0006s0808' => 'cru', 'Carub.0008s0501' => 'cru', 'Carub.0008s2379' => 'cru', 'Ca_08655_v3' => 'car', 'Ca_08922_v3' => 'car', 'Ca_08923_v3' => 'car', 'Ca_09119_v3' => 'car', 'Ca_09703_v3' => 'car', 'Ca_09705_v3' => 'car', 'Ca_09835_v3' => 'car', 'Ca_26403_v3' => 'car', 'Ca_30719_v3' => 'car', 'CBR_g17958' => 'cbr', 'CBR_g40516' => 'cbr', 'Cc00_g05350' => 'ccan', 'Cc01_g18690' => 'ccan', 'Cc03_g04830' => 'ccan', 'Cc03_g04850' => 'ccan', 'CDE02G4469' => 'cde', 'CDE06G0883' => 'cde', 'CDE06G1295' => 'cde', 'CDE06G1390' => 'cde', 'CDE07G0584' => 'cde', 'CDE07G1084' => 'cde', 'CDE08G1259' => 'cde', 'Cfa002341' => 'cfa', 'Cfa024337' => 'cfa', 'Ciclev10004749m.g' => 'ccl', 'Ciclev10006127m.g' => 'ccl', 'Ciclev10019720m.g' => 'ccl', 'Ciclev10022652m.g' => 'ccl', 'CiPaw.01G190400' => 'cil', 'CiPaw.01G190500' => 'cil', 'CiPaw.02G116400' => 'cil', 'CiPaw.02G116500' => 'cil', 'CiPaw.04G183000' => 'cil', 'CiPaw.04G183300' => 'cil', 'ClCG05G004610' => 'cla', 'ClCG05G004620' => 'cla', 'ClCG06G006730' => 'cla', 'ClCG06G006740' => 'cla', 'ClCG11G003690' => 'cla', 'COL.COLO4_08276' => 'col', 'COL.COLO4_08277' => 'col', 'COL.COLO4_15787' => 'col', 'COL.COLO4_15789' => 'col', 'Cpa.g.c44815' => 'cpa', 'Cpa.g.sc52.144' => 'cpa', 'Cpa.g.sc58.46' => 'cpa', 'Cpa.g.sc58.47' => 'cpa', 'Cre08.g360900' => 'cre', 'CsaV3_2G013030' => 'csa', 'CsaV3_2G013050' => 'csa', 'CsaV3_2G015620' => 'csa', 'CsaV3_3G012590' => 'csa', 'CsaV3_3G012600' => 'csa', 'CSS0001641' => 'camsi', 'CSS0008310' => 'camsi', 'CSS0013011' => 'camsi', 'CSS0017147' => 'camsi', 'CSS0022970' => 'camsi', 'CSS0025655' => 'camsi', 'CSS0028665' => 'camsi', 'CSS0029117' => 'camsi', 'CSS0032024' => 'camsi', 'CSS0039681' => 'camsi', 'CSS0046516' => 'camsi', 'CSS0050307' => 'camsi', 'DCAR_005871' => 'dca', 'DCAR_007342' => 'dca', 'DCAR_024228' => 'dca', 'DCAR_027277' => 'dca', 'DCAR_030718' => 'dca', 'Dinv20287' => 'din', 'Dinv22461' => 'din', 'Dinv22464' => 'din', 'Dinv29912' => 'din', 'Dinv29913' => 'din', 'Dinv34580' => 'din', 'Dinv34582' => 'din', 'Dinv44632' => 'din', 'Duzib052G0266' => 'dzi', 'Duzib133G0907' => 'dzi', 'Duzib133G1034' => 'dzi', 'Duzib138G0207' => 'dzi', 'Duzib138G0491' => 'dzi', 'Duzib151G0812' => 'dzi', 'Duzib151G1166' => 'dzi', 'Duzib168G0192' => 'dzi', 'Duzib211G0077' => 'dzi', 'Duzib212G0429' => 'dzi', 'Duzib212G0472' => 'dzi', 'ECA233G2617' => 'eca', 'ECA236G4188' => 'eca', 'ECA240G0936' => 'eca', 'ECA240G1129' => 'eca', 'ECA247G0623' => 'eca', 'EL10Ac5g10451' => 'bvu', 'EL10Ac5g10453' => 'bvu', 'EL10Ac5g10894' => 'bvu', 'Eucgr.H00192' => 'egr', 'Eucgr.H00193' => 'egr', 'Eucgr.H00194' => 'egr', 'Eucgr.J01562' => 'egr', 'Eucgr.K03301' => 'egr', 'FAN02G0632' => 'fan', 'FAN05G5378' => 'fan', 'FAN09G3247' => 'fan', 'FAN12G0435' => 'fan', 'FAN12G2426' => 'fan', 'FAN14G1707' => 'fan', 'FAN14G4725' => 'fan', 'FAN15G2071' => 'fan', 'FAN17G3065' => 'fan', 'FAN19G1376' => 'fan', 'FAN20G0354' => 'fan', 'FAN20G2429' => 'fan', 'FAN20G2658' => 'fan', 'FAN24G2343' => 'fan', 'FAN27G2362' => 'fan', 'FAN28G1765' => 'fan', 'FvH4_1g16020' => 'fve', 'FvH4_2g04890' => 'fve', 'FvH4_2g22270' => 'fve', 'FvH4_4g02630' => 'fve', 'FvH4_4g02640' => 'fve', 'FvH4_6g02650' => 'fve', 'Glyma.02G140600' => 'gma', 'Glyma.03G159900' => 'gma', 'Glyma.05G234800' => 'gma', 'Glyma.07G269600' => 'gma', 'Glyma.08G042300' => 'gma', 'Glyma.10G033500' => 'gma', 'Glyma.10G185200' => 'gma', 'Glyma.17G004300' => 'gma', 'Glyma.19G161900' => 'gma', 'Glyma.20G205100' => 'gma', 'Glyma.20G205200' => 'gma', 'Gohir.A01G139101' => 'ghi', 'Gohir.A02G035600' => 'ghi', 'Gohir.A02G117901' => 'ghi', 'Gohir.A07G210100' => 'ghi', 'Gohir.A07G210200' => 'ghi', 'Gohir.A08G061100' => 'ghi', 'Gohir.A09G223000' => 'ghi', 'Gohir.A09G223100' => 'ghi', 'Gohir.A10G113900' => 'ghi', 'Gohir.A10G114000' => 'ghi', 'Gohir.D02G042300' => 'ghi', 'Gohir.D07G216100' => 'ghi', 'Gohir.D07G216200' => 'ghi', 'Gohir.D08G070400' => 'ghi', 'Gohir.D09G225000' => 'ghi', 'Gohir.D09G225100' => 'ghi', 'Gohir.D10G152300' => 'ghi', 'Gohir.D10G153200' => 'ghi', 'Gohir.D11G133701' => 'ghi', 'Gorai.004G074100' => 'gra', 'Gorai.005G046800' => 'gra', 'Gorai.006G246500' => 'gra', 'Gorai.006G246600' => 'gra', 'Gorai.007G142900' => 'gra', 'Gorai.011G171000' => 'gra', 'Gorai.011G171100' => 'gra', 'Gorai.013G104300' => 'gra', 'Gorai.013G104400' => 'gra', 'GSVIVG01000754001' => 'vvi', 'GSVIVG01000756001' => 'vvi', 'GSVIVG01010903001' => 'vvi', 'GSVIVG01017623001' => 'vvi', 'GSVIVG01018113001' => 'vvi', 'GSVIVG01018116001' => 'vvi', 'GSVIVG01018118001' => 'vvi', 'HanXRQChr03g0076211' => 'han', 'HanXRQChr03g0092431' => 'han', 'HanXRQChr03g0092441' => 'han', 'HanXRQChr03g0092591' => 'han', 'HanXRQChr03g0092671' => 'han', 'HanXRQChr03g0092681' => 'han', 'HanXRQChr03g0092691' => 'han', 'HanXRQChr03g0092701' => 'han', 'HanXRQChr03g0092721' => 'han', 'HanXRQChr03g0092731' => 'han', 'HanXRQChr04g0113681' => 'han', 'HanXRQChr10g0281371' => 'han', 'HanXRQChr11g0337141' => 'han', 'HanXRQChr13g0424521' => 'han', 'HanXRQChr13g0424531' => 'han', 'HanXRQChr13g0424541' => 'han', 'HanXRQChr16g0498221' => 'han', 'Haze_04377' => 'cav', 'Haze_11298' => 'cav', 'Haze_24547' => 'cav', 'Haze_24550' => 'cav', 'Haze_26587' => 'cav', 'Hma1.2p1_0650F.1_g195410' => 'hma', 'Hma1.2p1_0893F.1_g233470' => 'hma', 'HPP92_006508' => 'vpl', 'HPP92_024780' => 'vpl', 'Hund02688' => 'sun', 'Hund09380' => 'sun', 'Hund09381' => 'sun', 'Hund09832' => 'sun', 'Hund09833' => 'sun', 'Hund11351' => 'sun', 'Hund11513' => 'sun', 'Lalb_Chr06g0162591' => 'lal', 'Lalb_Chr06g0162601' => 'lal', 'Lalb_Chr06g0169321' => 'lal', 'Lalb_Chr09g0330951' => 'lal', 'Lalb_Chr16g0387631' => 'lal', 'Lalb_Chr21g0306241' => 'lal', 'Lalb_Chr25g0290051' => 'lal', 'Lalb_Chr25g0290061' => 'lal', 'Lalb_Chr25g0290071' => 'lal', 'Lj1g0003876' => 'lja', 'Lj1P1207T36' => 'lonja', 'Lj2C1156G12' => 'lonja', 'Lj3A793G39' => 'lonja', 'Lj3C580G2' => 'lonja', 'Lj3C780G2' => 'lonja', 'Lj3C780T4' => 'lonja', 'Lj3C793G9' => 'lonja', 'Lj4g0012960' => 'lja', 'Lj5g0021252' => 'lja', 'Lj5g0021484' => 'lja', 'Lj5g0024528' => 'lja', 'Lj6A399T12' => 'lonja', 'Lj6A656G65' => 'lonja', 'Lsat_1_v5_gn_3_125500' => 'lsa', 'Lsat_1_v5_gn_3_125540' => 'lsa', 'Lsat_1_v5_gn_5_72701' => 'lsa', 'Lsat_1_v5_gn_8_91560' => 'lsa', 'Lsat_1_v5_gn_9_9640' => 'lsa', 'Manes.01G200600' => 'mes', 'Manes.01G200700' => 'mes', 'Manes.03G168900' => 'mes', 'Manes.03G169000' => 'mes', 'Manes.05G085801' => 'mes', 'Manes.05G086200' => 'mes', 'Manes.15G036700' => 'mes', 'Manes.15G036900' => 'mes', 'Mapoly0004s0172' => 'mpo', 'Mapoly0023s0001' => 'mpo', 'Mapoly0142s0012' => 'mpo', 'MBI01_g32854_MAGBIO' => 'mbi', 'MBI11_g24427_MAGBIO' => 'mbi', 'MBI11_g47319_MAGBIO' => 'mbi', 'MCO01G433' => 'mco', 'MD00G1187800' => 'mdo', 'MD04G1226500' => 'mdo', 'MD05G1203900' => 'mdo', 'MD10G1191100' => 'mdo', 'MD12G1243500' => 'mdo', 'MD13G1207000' => 'mdo', 'MD13G1207100' => 'mdo', 'MD16G1208600' => 'mdo', 'Medtr1g050352' => 'mtr', 'Medtr1g070385' => 'mtr', 'Medtr1g070450' => 'mtr', 'Medtr1g075200' => 'mtr', 'Medtr1g075250' => 'mtr', 'Medtr1g075260' => 'mtr', 'Medtr1g475250' => 'mtr', 'Medtr4g075450' => 'mtr', 'Medtr7g096300' => 'mtr', 'Medtr8g105110' => 'mtr', 'MELO3C006470.2' => 'cme', 'MELO3C006471.2' => 'cme', 'MELO3C020772.2' => 'cme', 'MELO3C026780.2' => 'cme', 'MELO3C026781.2' => 'cme', 'Migut.D00390' => 'egut', 'Migut.G00435' => 'egut', 'Migut.G00436' => 'egut', 'Migut.G00718' => 'egut', 'MSTRG.21891' => 'ama', 'MSTRG.26910' => 'ama', 'MSTRG.4099' => 'ama', 'MSTRG.9925' => 'ama', 'Nitab4.5_0000165g0010' => 'nta', 'Nitab4.5_0000209g0180' => 'nta', 'Nitab4.5_0000244g0440' => 'nta', 'Nitab4.5_0000525g0220' => 'nta', 'Nitab4.5_0001597g0020' => 'nta', 'Nitab4.5_0001878g0040' => 'nta', 'Nitab4.5_0001878g0060' => 'nta', 'Nitab4.5_0002838g0100' => 'nta', 'Nitab4.5_0002838g0120' => 'nta', 'Nitab4.5_0004798g0030' => 'nta', 'Nitab4.5_0005420g0010' => 'nta', 'Nitab4.5_0005507g0010' => 'nta', 'Nitab4.5_0005574g0020' => 'nta', 'Nitab4.5_0005838g0010' => 'nta', 'Nitab4.5_0010580g0020' => 'nta', 'Nn1g02599' => 'nnu', 'Nn1g02608' => 'nnu', 'Nn3g17742' => 'nnu', 'Nn3g19534' => 'nnu', 'Nn3g19535' => 'nnu', 'Oeu008790.1' => 'oeu', 'Oeu008792.1' => 'oeu', 'Oeu032590.1' => 'oeu', 'Oeu035349.1' => 'oeu', 'Oeu049791.1' => 'oeu', 'Os01g0774500' => 'osa', 'Os03g0628800' => 'osa', 'Os03g0798600' => 'osa', 'Os05g0508800' => 'osa', 'Peaxi162Scf00036g02018' => 'pax', 'Peaxi162Scf00578g00032' => 'pax', 'Peaxi162Scf00578g00317' => 'pax', 'Peaxi162Scf00785g00114' => 'pax', 'Peaxi162Scf00813g00119' => 'pax', 'Peaxi162Scf00906g00227' => 'pax', 'PGR004G0875' => 'pgr', 'PGR004G2424' => 'pgr', 'PGR031G1239' => 'pgr', 'PGR031G2474' => 'pgr', 'PGR044G0423' => 'pgr', 'PGSC0003DMG400001128' => 'stu', 'PGSC0003DMG400007336' => 'stu', 'PGSC0003DMG400016318' => 'stu', 'PGSC0003DMG400016319' => 'stu', 'PGSC0003DMG400018074' => 'stu', 'Phvul.001G157700' => 'pvu', 'Phvul.002G148550' => 'pvu', 'Phvul.002G320200' => 'pvu', 'Phvul.003G089200' => 'pvu', 'Phvul.007G126000' => 'pvu', 'Phvul.007G126100' => 'pvu', 'Phvul.007G178000' => 'pvu', 'Phvul.007G178200' => 'pvu', 'Potri.002G043000' => 'ptr', 'Potri.002G043200' => 'ptr', 'Potri.003G123750' => 'ptr', 'Potri.005G055401' => 'ptr', 'Potri.005G219700' => 'ptr', 'Potri.005G220000' => 'ptr', 'Potri.008G161901' => 'ptr', 'Potri.008G162000' => 'ptr', 'Potri.008G162400' => 'ptr', 'Potri.010G076900' => 'ptr', 'Pp3c12_9180' => 'ppa', 'Pp3c13_19770' => 'ppa', 'Pp3c14_22950' => 'ppa', 'Pp3c16_12160' => 'ppa', 'Pp3c27_7820' => 'ppa', 'Pp3c2_3490' => 'ppa', 'Pp3c3_23700' => 'ppa', 'Pp3c3_36520' => 'ppa', 'Pp3c4_15250' => 'ppa', 'PRCOL_00007002' => 'pco', 'Prupe.1G030600' => 'ppe', 'Prupe.1G030700' => 'ppe', 'Prupe.6G345200' => 'ppe', 'Prupe.8G230300' => 'ppe', 'Prupe.8G230500' => 'ppe', 'Psat3g059600' => 'psa', 'Psat5g200920' => 'psa', 'Psat6g056440' => 'psa', 'Psat6g057360' => 'psa', 'Psat6g134120' => 'psa', 'Psat6g134160' => 'psa', 'Psat7g008640' => 'psa', 'Psat7g185240' => 'psa', 'PSO017G1330' => 'pso', 'PSO063G6097' => 'pso', 'PSO170G0835' => 'pso', 'PSO170G2499' => 'pso', 'PSO210G5058' => 'pso', 'PSO210G6154' => 'pso', 'PSO585G0031' => 'pso', 'PSO832G0264' => 'pso', 'PSO832G4288' => 'pso', 'QL03p027355' => 'qlo', 'QL03p027430' => 'qlo', 'QL04p081380' => 'qlo', 'QL06p015642' => 'qlo', 'QL06p015650' => 'qlo', 'QL06p015686' => 'qlo', 'QL12p042927' => 'qlo', 'QL93p1863_0035' => 'qlo', 'RcHm_v2.0_Chr3g0450581' => 'rch', 'RcHm_v2.0_Chr4g0390371' => 'rch', 'RcHm_v2.0_Chr4g0390381' => 'rch', 'RcHm_v2.0_Chr4g0390491' => 'rch', 'RcHm_v2.0_Chr4g0390501' => 'rch', 'RcHm_v2.0_Chr6g0289231' => 'rch', 'Rhsim04G0190400' => 'rsi', 'Rhsim04G0190500' => 'rsi', 'Rhsim04G0190600' => 'rsi', 'Rhsim13G0031400' => 'rsi', 'Rhsim13G0165600' => 'rsi', 'RhsimUnG0114600' => 'rsi', 'RhsimUnG0114700' => 'rsi', 'Sabra02G0034800' => 'sbr', 'Sabra02G0035100' => 'sbr', 'Sabra05G0168600' => 'sbr', 'Sabra05G0168800' => 'sbr', 'Sabra08G0123700' => 'sbr', 'Sabra10G0031900' => 'sbr', 'Sabra13G0039000' => 'sbr', 'SalBow2G0782' => 'sbo', 'SalBow2G1403' => 'sbo', 'SalBow4G0074' => 'sbo', 'SalBow4G2635' => 'sbo', 'SalBow5G3010' => 'sbo', 'Sc05g0000870' => 'sci', 'Sc05g0000890' => 'sci', 'Sc13g0005000' => 'sci', 'Sc13g0005030' => 'sci', 'Sc19g0003790' => 'sci', 'Sc19g0003800' => 'sci', 'Sed0003467' => 'sed', 'Sed0009355' => 'sed', 'Sed0009894' => 'sed', 'Sed0011972' => 'sed', 'Sed0021483' => 'sed', 'Sed0021750' => 'sed', 'Sed0026279' => 'sed', 'SEGI_05312' => 'sgi', 'SEGI_10112' => 'sgi', 'SEGI_15835' => 'sgi', 'SEGI_30386' => 'sgi', 'SEGI_34122' => 'sgi', 'SEGI_35063' => 'sgi', 'SGA_v2.0_scaffold101G29794' => 'sas', 'SGA_v2.0_scaffold1G00573' => 'sas', 'SGA_v2.0_scaffold79G25637' => 'sas', 'SGA_v2.0_scaffold88G27283' => 'sas', 'SGA_v2.0_scaffold88G27285' => 'sas', 'SGA_v2.0_scaffold88G27331' => 'sas', 'SHI09937' => 'shi', 'SMO119G0302' => 'smo', 'SMO137G0231' => 'smo', 'SMO367G1151' => 'smo', 'Solyc02g082000.3' => 'sly', 'Solyc06g031670.3' => 'sly', 'Solyc06g053810.3' => 'sly', 'Solyc07g025457.1' => 'sly', 'Solyc08g059740.1' => 'sly', 'Solyc08g059750.3' => 'sly', 'Solyc09g083370.3' => 'sly', 'Solyc12g038950.3' => 'sly', 'Sopen02g026630' => 'spe', 'Sopen06g018930' => 'spe', 'Sopen06g018940' => 'spe', 'Sopen08g009460' => 'spe', 'Sopen09g032290' => 'spe', 'Sp1g03080' => 'spa', 'Sp1g03090' => 'spa', 'Sp1g05480' => 'spa', 'Sp2g07860' => 'spa', 'Sp2g08430' => 'spa', 'Sp2g08440' => 'spa', 'Sp2g26200' => 'spa', 'Sp4g13170' => 'spa', 'Sp6g33840' => 'spa', 'SpUn1204_0010' => 'spa', 'TAR365G0908' => 'tar', 'TAR381G1270' => 'tar', 'TAR381G1651' => 'tar', 'TAR625G1131' => 'tar', 'TAR633G0962' => 'tar', 'TAR633G1729' => 'tar', 'TAR633G1864' => 'tar', 'TAR636G0221' => 'tar', 'TAR636G0314' => 'tar', 'TAR636G3202' => 'tar', 'THA.LOC104800805' => 'tha', 'THA.LOC104801096' => 'tha', 'THA.LOC104801555' => 'tha', 'THA.LOC104808491' => 'tha', 'THA.LOC104808595' => 'tha', 'THA.LOC104815985' => 'tha', 'THA.LOC104822250' => 'tha', 'THA.LOC104826071' => 'tha', 'Thecc.01G265200' => 'tca', 'Thecc.01G265300' => 'tca', 'Thecc.01G265700' => 'tca', 'Thecc.03G109100' => 'tca', 'Thecc.04G245900' => 'tca', 'Thecc.04G246000' => 'tca', 'Thhalv10003334m.g' => 'esa', 'Thhalv10005508m.g' => 'esa', 'Thhalv10005643m.g' => 'esa', 'Thhalv10007316m.g' => 'esa', 'Thhalv10009006m.g' => 'esa', 'Thhalv10009309m.g' => 'esa', 'Thhalv10014917m.g' => 'esa', 'Thhalv10014919m.g' => 'esa', 'Thhalv10015393m.g' => 'esa', 'Thhalv10016515m.g' => 'esa', 'Thhalv10029242m.g' => 'esa', 'TPR.G16654' => 'tpr', 'TPR.G20589' => 'tpr', 'TPR.G23029' => 'tpr', 'TPR.G27731' => 'tpr', 'TPR.G28889' => 'tpr', 'TPR.G28899' => 'tpr', 'TPR.G30846' => 'tpr', 'TPR.G5452' => 'tpr', 'TPR.G5713' => 'tpr', 'TPR.G9046' => 'tpr', 'TPR.G9061' => 'tpr', 'TWI09G1075' => 'twi', 'TWI12G0806' => 'twi', 'TWI18G0108' => 'twi', 'TWI53G1361' => 'twi', 'TWI73G0185' => 'twi', 'TWI73G0427' => 'twi', 'unitig_37.g12001' => 'ugi', 'unitig_747.g21660' => 'ugi', 'unitig_748.g7232' => 'ugi', 'unitig_748.g7315' => 'ugi', 'unitig_85.g27262' => 'ugi', 'unitig_92.g28220' => 'ugi', 'vmacro02632' => 'vma', 'vmacro08410' => 'vma', 'vmacro08411' => 'vma', 'vmacro15407' => 'vma', 'VMungo0251G3619' => 'vmu', 'VMungo0720G1204' => 'vmu', 'VMungo0720G1918' => 'vmu', 'VMungo0720G2387' => 'vmu', 'VMungo0720G2961' => 'vmu', 'VMungo1215G2154' => 'vmu', 'VMungo1383G2411' => 'vmu', 'Zm00001eb051130' => 'zma', 'Zm00001eb116830' => 'zma', 'Zm00001eb116850' => 'zma', 'Zm00001eb151740' => 'zma', 'Zm00001eb292360' => 'zma', 'Zm00001eb301640' => 'zma' ), 'gf_id' => 'HOM05D000856', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000856' ), 'data_identifier' => 'HOM05D000856', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000856', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p00010' => 'bna', 'A03p04160' => 'bna', 'A03p17160' => 'bna', 'A04p23370' => 'bna', 'A05p14860' => 'bna', 'A08p37020' => 'bna', 'A09p08050' => 'bna', 'A09p66800' => 'bna', 'A09p67940' => 'bna', 'A10p02680' => 'bna', 'A10p05320' => 'bna', 'Aa31LG1G20560' => 'aar', 'Aa31LG1G20610' => 'aar', 'Aa31LG1G7810' => 'aar', 'Aa31LG5G3590' => 'aar', 'Aa31LG5G6140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3819' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4683' => 'aag', 'Actinidia04480' => 'ach', 'Actinidia05466' => 'ach', 'Actinidia08445' => 'ach', 'Actinidia21170' => 'ach', 'Actinidia24812' => 'ach', 'Actinidia24951' => 'ach', 'Actinidia40088' => 'ach', 'Ah.02g111660' => 'amhyb', 'Ah.11g048900' => 'amhyb', 'Ah.11g049910' => 'amhyb', 'AL1G13870' => 'aly', 'AL1G13880' => 'aly', 'AL1G16760' => 'aly', 'AL390U10020' => 'aly', 'AL4G25520' => 'aly', 'AL6G19890' => 'aly', 'AL6G19900' => 'aly', 'AL6G19910' => 'aly', 'AL8G40100' => 'aly', 'Aqoxy2G03562' => 'aox', 'Aqoxy5G00316' => 'aox', 'Aqoxy5G00926' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1628KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1H403S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2FU6SJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.882I6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8YRY2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YN1SN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AF70II' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZA8L1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F916KL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHRD8H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KTZ8QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S22EMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8M29T' => 'arhy', 'AT1G04270' => 'ath', 'AT1G04280' => 'ath', 'AT1G06750' => 'ath', 'AT1G33850' => 'ath', 'AT2G30630' => 'ath', 'AT5G09490' => 'ath', 'AT5G09500' => 'ath', 'AT5G09510' => 'ath', 'AT5G43640' => 'ath', 'AT5G63070' => 'ath', 'ATR0605G315' => 'atr', 'Atru.chr11.175' => 'acertr', 'Atru.chr11.653' => 'acertr', 'Atru.chr3.1616' => 'acertr', 'Atru.chr4.2230' => 'acertr', 'Atru.chr4.2232' => 'acertr', 'Atru.chr5.1598' => 'acertr', 'Atru.chr5.1600' => 'acertr', 'Atru.chr5.2188' => 'acertr', 'AUR62008326' => 'cqu', 'AUR62011922' => 'cqu', 'AUR62011924' => 'cqu', 'AUR62021771' => 'cqu', 'AUR62032237' => 'cqu', 'AUR62032240' => 'cqu', 'BcaB01g05572' => 'bca', 'BcaB02g10337' => 'bca', 'BcaB04g19944' => 'bca', 'BcaB05g21548' => 'bca', 'BcaB05g21549' => 'bca', 'BcaB05g23227' => 'bca', 'BcaB06g26256' => 'bca', 'BcaB06g26257' => 'bca', 'BcaB06g28379' => 'bca', 'BcaC02g11159' => 'bca', 'BcaC03g13258' => 'bca', 'BcaC03g13259' => 'bca', 'BcaC05g24456' => 'bca', 'BcaC05g24457' => 'bca', 'BcaC07g36922' => 'bca', 'BcaC07g36923' => 'bca', 'BcaC07g42050' => 'bca', 'BcaC07g42176' => 'bca', 'BcaC07g42195' => 'bca', 'BcaC07g42196' => 'bca', 'BcaNung06674' => 'bca', 'BolC2t06351H' => 'bol', 'BolC2t06352H' => 'bol', 'BolC3t12993H' => 'bol', 'BolC4t23525H' => 'bol', 'BolC4t27475H' => 'bol', 'BolC5t29025H' => 'bol', 'BolC5t29026H' => 'bol', 'BolC8t46898H' => 'bol', 'BolC8t46899H' => 'bol', 'BolC8t52630H' => 'bol', 'BolC8t52765H' => 'bol', 'BolC9t53824H' => 'bol', 'BraA03t09760Z' => 'bra', 'BraA03t10990Z' => 'bra', 'BraA05t20413Z' => 'bra', 'BraA08t35602Z' => 'bra', 'BraA09t36458Z' => 'bra', 'BraA09t42018Z' => 'bra', 'BraA09t42129Z' => 'bra', 'BraA10t42536Z' => 'bra', 'BraA10t42537Z' => 'bra', 'C01p10690' => 'bna', 'C02p03890' => 'bna', 'C02p03900' => 'bna', 'C03p04620' => 'bna', 'C04p19870' => 'bna', 'C04p59670' => 'bna', 'C05p02460' => 'bna', 'C05p02470' => 'bna', 'C08p00980' => 'bna', 'C08p00990' => 'bna', 'C08p51030' => 'bna', 'C08p52360' => 'bna', 'C09p09120' => 'bna', 'CAN.G19.15' => 'can', 'CAN.G251.10' => 'can', 'CAN.G251.9' => 'can', 'CAN.G398.24' => 'can', 'CAN.G410.32' => 'can', 'CAN.G881.2' => 'can', 'CANSAT01G3025' => 'cansat', 'CANSAT78G1211' => 'cansat', 'CANSAT78G1218' => 'cansat', 'CANSAT78G1521' => 'cansat', 'CANSAT78G1670' => 'cansat', 'CARHR003600' => 'chi', 'CARHR003610' => 'chi', 'CARHR006290' => 'chi', 'CARHR006430' => 'chi', 'CARHR124110' => 'chi', 'CARHR203870' => 'chi', 'CARHR203880' => 'chi', 'CARHR203890' => 'chi', 'CARHR276880' => 'chi', 'Carub.0001s0346' => 'cru', 'Carub.0001s0347' => 'cru', 'Carub.0001s0607' => 'cru', 'Carub.0003s2768' => 'cru', 'Carub.0003s2769' => 'cru', 'Carub.0004s1178' => 'cru', 'Carub.0006s0806' => 'cru', 'Carub.0006s0807' => 'cru', 'Carub.0006s0808' => 'cru', 'Carub.0008s0501' => 'cru', 'Carub.0008s2379' => 'cru', 'Ca_08655_v3' => 'car', 'Ca_08922_v3' => 'car', 'Ca_08923_v3' => 'car', 'Ca_09119_v3' => 'car', 'Ca_09703_v3' => 'car', 'Ca_09705_v3' => 'car', 'Ca_09835_v3' => 'car', 'Ca_26403_v3' => 'car', 'Ca_30719_v3' => 'car', 'CBR_g17958' => 'cbr', 'CBR_g40516' => 'cbr', 'Cc00_g05350' => 'ccan', 'Cc01_g18690' => 'ccan', 'Cc03_g04830' => 'ccan', 'Cc03_g04850' => 'ccan', 'CDE02G4469' => 'cde', 'CDE06G0883' => 'cde', 'CDE06G1295' => 'cde', 'CDE06G1390' => 'cde', 'CDE07G0584' => 'cde', 'CDE07G1084' => 'cde', 'CDE08G1259' => 'cde', 'Cfa002341' => 'cfa', 'Cfa024337' => 'cfa', 'Ciclev10004749m.g' => 'ccl', 'Ciclev10006127m.g' => 'ccl', 'Ciclev10019720m.g' => 'ccl', 'Ciclev10022652m.g' => 'ccl', 'CiPaw.01G190400' => 'cil', 'CiPaw.01G190500' => 'cil', 'CiPaw.02G116400' => 'cil', 'CiPaw.02G116500' => 'cil', 'CiPaw.04G183000' => 'cil', 'CiPaw.04G183300' => 'cil', 'ClCG05G004610' => 'cla', 'ClCG05G004620' => 'cla', 'ClCG06G006730' => 'cla', 'ClCG06G006740' => 'cla', 'ClCG11G003690' => 'cla', 'COL.COLO4_08276' => 'col', 'COL.COLO4_08277' => 'col', 'COL.COLO4_15787' => 'col', 'COL.COLO4_15789' => 'col', 'Cpa.g.c44815' => 'cpa', 'Cpa.g.sc52.144' => 'cpa', 'Cpa.g.sc58.46' => 'cpa', 'Cpa.g.sc58.47' => 'cpa', 'Cre08.g360900' => 'cre', 'CsaV3_2G013030' => 'csa', 'CsaV3_2G013050' => 'csa', 'CsaV3_2G015620' => 'csa', 'CsaV3_3G012590' => 'csa', 'CsaV3_3G012600' => 'csa', 'CSS0001641' => 'camsi', 'CSS0008310' => 'camsi', 'CSS0013011' => 'camsi', 'CSS0017147' => 'camsi', 'CSS0022970' => 'camsi', 'CSS0025655' => 'camsi', 'CSS0028665' => 'camsi', 'CSS0029117' => 'camsi', 'CSS0032024' => 'camsi', 'CSS0039681' => 'camsi', 'CSS0046516' => 'camsi', 'CSS0050307' => 'camsi', 'DCAR_005871' => 'dca', 'DCAR_007342' => 'dca', 'DCAR_024228' => 'dca', 'DCAR_027277' => 'dca', 'DCAR_030718' => 'dca', 'Dinv20287' => 'din', 'Dinv22461' => 'din', 'Dinv22464' => 'din', 'Dinv29912' => 'din', 'Dinv29913' => 'din', 'Dinv34580' => 'din', 'Dinv34582' => 'din', 'Dinv44632' => 'din', 'Duzib052G0266' => 'dzi', 'Duzib133G0907' => 'dzi', 'Duzib133G1034' => 'dzi', 'Duzib138G0207' => 'dzi', 'Duzib138G0491' => 'dzi', 'Duzib151G0812' => 'dzi', 'Duzib151G1166' => 'dzi', 'Duzib168G0192' => 'dzi', 'Duzib211G0077' => 'dzi', 'Duzib212G0429' => 'dzi', 'Duzib212G0472' => 'dzi', 'ECA233G2617' => 'eca', 'ECA236G4188' => 'eca', 'ECA240G0936' => 'eca', 'ECA240G1129' => 'eca', 'ECA247G0623' => 'eca', 'EL10Ac5g10451' => 'bvu', 'EL10Ac5g10453' => 'bvu', 'EL10Ac5g10894' => 'bvu', 'Eucgr.H00192' => 'egr', 'Eucgr.H00193' => 'egr', 'Eucgr.H00194' => 'egr', 'Eucgr.J01562' => 'egr', 'Eucgr.K03301' => 'egr', 'FAN02G0632' => 'fan', 'FAN05G5378' => 'fan', 'FAN09G3247' => 'fan', 'FAN12G0435' => 'fan', 'FAN12G2426' => 'fan', 'FAN14G1707' => 'fan', 'FAN14G4725' => 'fan', 'FAN15G2071' => 'fan', 'FAN17G3065' => 'fan', 'FAN19G1376' => 'fan', 'FAN20G0354' => 'fan', 'FAN20G2429' => 'fan', 'FAN20G2658' => 'fan', 'FAN24G2343' => 'fan', 'FAN27G2362' => 'fan', 'FAN28G1765' => 'fan', 'FvH4_1g16020' => 'fve', 'FvH4_2g04890' => 'fve', 'FvH4_2g22270' => 'fve', 'FvH4_4g02630' => 'fve', 'FvH4_4g02640' => 'fve', 'FvH4_6g02650' => 'fve', 'Glyma.02G140600' => 'gma', 'Glyma.03G159900' => 'gma', 'Glyma.05G234800' => 'gma', 'Glyma.07G269600' => 'gma', 'Glyma.08G042300' => 'gma', 'Glyma.10G033500' => 'gma', 'Glyma.10G185200' => 'gma', 'Glyma.17G004300' => 'gma', 'Glyma.19G161900' => 'gma', 'Glyma.20G205100' => 'gma', 'Glyma.20G205200' => 'gma', 'Gohir.A01G139101' => 'ghi', 'Gohir.A02G035600' => 'ghi', 'Gohir.A02G117901' => 'ghi', 'Gohir.A07G210100' => 'ghi', 'Gohir.A07G210200' => 'ghi', 'Gohir.A08G061100' => 'ghi', 'Gohir.A09G223000' => 'ghi', 'Gohir.A09G223100' => 'ghi', 'Gohir.A10G113900' => 'ghi', 'Gohir.A10G114000' => 'ghi', 'Gohir.D02G042300' => 'ghi', 'Gohir.D07G216100' => 'ghi', 'Gohir.D07G216200' => 'ghi', 'Gohir.D08G070400' => 'ghi', 'Gohir.D09G225000' => 'ghi', 'Gohir.D09G225100' => 'ghi', 'Gohir.D10G152300' => 'ghi', 'Gohir.D10G153200' => 'ghi', 'Gohir.D11G133701' => 'ghi', 'Gorai.004G074100' => 'gra', 'Gorai.005G046800' => 'gra', 'Gorai.006G246500' => 'gra', 'Gorai.006G246600' => 'gra', 'Gorai.007G142900' => 'gra', 'Gorai.011G171000' => 'gra', 'Gorai.011G171100' => 'gra', 'Gorai.013G104300' => 'gra', 'Gorai.013G104400' => 'gra', 'GSVIVG01000754001' => 'vvi', 'GSVIVG01000756001' => 'vvi', 'GSVIVG01010903001' => 'vvi', 'GSVIVG01017623001' => 'vvi', 'GSVIVG01018113001' => 'vvi', 'GSVIVG01018116001' => 'vvi', 'GSVIVG01018118001' => 'vvi', 'HanXRQChr03g0076211' => 'han', 'HanXRQChr03g0092431' => 'han', 'HanXRQChr03g0092441' => 'han', 'HanXRQChr03g0092591' => 'han', 'HanXRQChr03g0092671' => 'han', 'HanXRQChr03g0092681' => 'han', 'HanXRQChr03g0092691' => 'han', 'HanXRQChr03g0092701' => 'han', 'HanXRQChr03g0092721' => 'han', 'HanXRQChr03g0092731' => 'han', 'HanXRQChr04g0113681' => 'han', 'HanXRQChr10g0281371' => 'han', 'HanXRQChr11g0337141' => 'han', 'HanXRQChr13g0424521' => 'han', 'HanXRQChr13g0424531' => 'han', 'HanXRQChr13g0424541' => 'han', 'HanXRQChr16g0498221' => 'han', 'Haze_04377' => 'cav', 'Haze_11298' => 'cav', 'Haze_24547' => 'cav', 'Haze_24550' => 'cav', 'Haze_26587' => 'cav', 'Hma1.2p1_0650F.1_g195410' => 'hma', 'Hma1.2p1_0893F.1_g233470' => 'hma', 'HPP92_006508' => 'vpl', 'HPP92_024780' => 'vpl', 'Hund02688' => 'sun', 'Hund09380' => 'sun', 'Hund09381' => 'sun', 'Hund09832' => 'sun', 'Hund09833' => 'sun', 'Hund11351' => 'sun', 'Hund11513' => 'sun', 'Lalb_Chr06g0162591' => 'lal', 'Lalb_Chr06g0162601' => 'lal', 'Lalb_Chr06g0169321' => 'lal', 'Lalb_Chr09g0330951' => 'lal', 'Lalb_Chr16g0387631' => 'lal', 'Lalb_Chr21g0306241' => 'lal', 'Lalb_Chr25g0290051' => 'lal', 'Lalb_Chr25g0290061' => 'lal', 'Lalb_Chr25g0290071' => 'lal', 'Lj1g0003876' => 'lja', 'Lj1P1207T36' => 'lonja', 'Lj2C1156G12' => 'lonja', 'Lj3A793G39' => 'lonja', 'Lj3C580G2' => 'lonja', 'Lj3C780G2' => 'lonja', 'Lj3C780T4' => 'lonja', 'Lj3C793G9' => 'lonja', 'Lj4g0012960' => 'lja', 'Lj5g0021252' => 'lja', 'Lj5g0021484' => 'lja', 'Lj5g0024528' => 'lja', 'Lj6A399T12' => 'lonja', 'Lj6A656G65' => 'lonja', 'Lsat_1_v5_gn_3_125500' => 'lsa', 'Lsat_1_v5_gn_3_125540' => 'lsa', 'Lsat_1_v5_gn_5_72701' => 'lsa', 'Lsat_1_v5_gn_8_91560' => 'lsa', 'Lsat_1_v5_gn_9_9640' => 'lsa', 'Manes.01G200600' => 'mes', 'Manes.01G200700' => 'mes', 'Manes.03G168900' => 'mes', 'Manes.03G169000' => 'mes', 'Manes.05G085801' => 'mes', 'Manes.05G086200' => 'mes', 'Manes.15G036700' => 'mes', 'Manes.15G036900' => 'mes', 'Mapoly0004s0172' => 'mpo', 'Mapoly0023s0001' => 'mpo', 'Mapoly0142s0012' => 'mpo', 'MBI01_g32854_MAGBIO' => 'mbi', 'MBI11_g24427_MAGBIO' => 'mbi', 'MBI11_g47319_MAGBIO' => 'mbi', 'MCO01G433' => 'mco', 'MD00G1187800' => 'mdo', 'MD04G1226500' => 'mdo', 'MD05G1203900' => 'mdo', 'MD10G1191100' => 'mdo', 'MD12G1243500' => 'mdo', 'MD13G1207000' => 'mdo', 'MD13G1207100' => 'mdo', 'MD16G1208600' => 'mdo', 'Medtr1g050352' => 'mtr', 'Medtr1g070385' => 'mtr', 'Medtr1g070450' => 'mtr', 'Medtr1g075200' => 'mtr', 'Medtr1g075250' => 'mtr', 'Medtr1g075260' => 'mtr', 'Medtr1g475250' => 'mtr', 'Medtr4g075450' => 'mtr', 'Medtr7g096300' => 'mtr', 'Medtr8g105110' => 'mtr', 'MELO3C006470.2' => 'cme', 'MELO3C006471.2' => 'cme', 'MELO3C020772.2' => 'cme', 'MELO3C026780.2' => 'cme', 'MELO3C026781.2' => 'cme', 'Migut.D00390' => 'egut', 'Migut.G00435' => 'egut', 'Migut.G00436' => 'egut', 'Migut.G00718' => 'egut', 'MSTRG.21891' => 'ama', 'MSTRG.26910' => 'ama', 'MSTRG.4099' => 'ama', 'MSTRG.9925' => 'ama', 'Nitab4.5_0000165g0010' => 'nta', 'Nitab4.5_0000209g0180' => 'nta', 'Nitab4.5_0000244g0440' => 'nta', 'Nitab4.5_0000525g0220' => 'nta', 'Nitab4.5_0001597g0020' => 'nta', 'Nitab4.5_0001878g0040' => 'nta', 'Nitab4.5_0001878g0060' => 'nta', 'Nitab4.5_0002838g0100' => 'nta', 'Nitab4.5_0002838g0120' => 'nta', 'Nitab4.5_0004798g0030' => 'nta', 'Nitab4.5_0005420g0010' => 'nta', 'Nitab4.5_0005507g0010' => 'nta', 'Nitab4.5_0005574g0020' => 'nta', 'Nitab4.5_0005838g0010' => 'nta', 'Nitab4.5_0010580g0020' => 'nta', 'Nn1g02599' => 'nnu', 'Nn1g02608' => 'nnu', 'Nn3g17742' => 'nnu', 'Nn3g19534' => 'nnu', 'Nn3g19535' => 'nnu', 'Oeu008790.1' => 'oeu', 'Oeu008792.1' => 'oeu', 'Oeu032590.1' => 'oeu', 'Oeu035349.1' => 'oeu', 'Oeu049791.1' => 'oeu', 'Os01g0774500' => 'osa', 'Os03g0628800' => 'osa', 'Os03g0798600' => 'osa', 'Os05g0508800' => 'osa', 'Peaxi162Scf00036g02018' => 'pax', 'Peaxi162Scf00578g00032' => 'pax', 'Peaxi162Scf00578g00317' => 'pax', 'Peaxi162Scf00785g00114' => 'pax', 'Peaxi162Scf00813g00119' => 'pax', 'Peaxi162Scf00906g00227' => 'pax', 'PGR004G0875' => 'pgr', 'PGR004G2424' => 'pgr', 'PGR031G1239' => 'pgr', 'PGR031G2474' => 'pgr', 'PGR044G0423' => 'pgr', 'PGSC0003DMG400001128' => 'stu', 'PGSC0003DMG400007336' => 'stu', 'PGSC0003DMG400016318' => 'stu', 'PGSC0003DMG400016319' => 'stu', 'PGSC0003DMG400018074' => 'stu', 'Phvul.001G157700' => 'pvu', 'Phvul.002G148550' => 'pvu', 'Phvul.002G320200' => 'pvu', 'Phvul.003G089200' => 'pvu', 'Phvul.007G126000' => 'pvu', 'Phvul.007G126100' => 'pvu', 'Phvul.007G178000' => 'pvu', 'Phvul.007G178200' => 'pvu', 'Potri.002G043000' => 'ptr', 'Potri.002G043200' => 'ptr', 'Potri.003G123750' => 'ptr', 'Potri.005G055401' => 'ptr', 'Potri.005G219700' => 'ptr', 'Potri.005G220000' => 'ptr', 'Potri.008G161901' => 'ptr', 'Potri.008G162000' => 'ptr', 'Potri.008G162400' => 'ptr', 'Potri.010G076900' => 'ptr', 'Pp3c12_9180' => 'ppa', 'Pp3c13_19770' => 'ppa', 'Pp3c14_22950' => 'ppa', 'Pp3c16_12160' => 'ppa', 'Pp3c27_7820' => 'ppa', 'Pp3c2_3490' => 'ppa', 'Pp3c3_23700' => 'ppa', 'Pp3c3_36520' => 'ppa', 'Pp3c4_15250' => 'ppa', 'PRCOL_00007002' => 'pco', 'Prupe.1G030600' => 'ppe', 'Prupe.1G030700' => 'ppe', 'Prupe.6G345200' => 'ppe', 'Prupe.8G230300' => 'ppe', 'Prupe.8G230500' => 'ppe', 'Psat3g059600' => 'psa', 'Psat5g200920' => 'psa', 'Psat6g056440' => 'psa', 'Psat6g057360' => 'psa', 'Psat6g134120' => 'psa', 'Psat6g134160' => 'psa', 'Psat7g008640' => 'psa', 'Psat7g185240' => 'psa', 'PSO017G1330' => 'pso', 'PSO063G6097' => 'pso', 'PSO170G0835' => 'pso', 'PSO170G2499' => 'pso', 'PSO210G5058' => 'pso', 'PSO210G6154' => 'pso', 'PSO585G0031' => 'pso', 'PSO832G0264' => 'pso', 'PSO832G4288' => 'pso', 'QL03p027355' => 'qlo', 'QL03p027430' => 'qlo', 'QL04p081380' => 'qlo', 'QL06p015642' => 'qlo', 'QL06p015650' => 'qlo', 'QL06p015686' => 'qlo', 'QL12p042927' => 'qlo', 'QL93p1863_0035' => 'qlo', 'RcHm_v2.0_Chr3g0450581' => 'rch', 'RcHm_v2.0_Chr4g0390371' => 'rch', 'RcHm_v2.0_Chr4g0390381' => 'rch', 'RcHm_v2.0_Chr4g0390491' => 'rch', 'RcHm_v2.0_Chr4g0390501' => 'rch', 'RcHm_v2.0_Chr6g0289231' => 'rch', 'Rhsim04G0190400' => 'rsi', 'Rhsim04G0190500' => 'rsi', 'Rhsim04G0190600' => 'rsi', 'Rhsim13G0031400' => 'rsi', 'Rhsim13G0165600' => 'rsi', 'RhsimUnG0114600' => 'rsi', 'RhsimUnG0114700' => 'rsi', 'Sabra02G0034800' => 'sbr', 'Sabra02G0035100' => 'sbr', 'Sabra05G0168600' => 'sbr', 'Sabra05G0168800' => 'sbr', 'Sabra08G0123700' => 'sbr', 'Sabra10G0031900' => 'sbr', 'Sabra13G0039000' => 'sbr', 'SalBow2G0782' => 'sbo', 'SalBow2G1403' => 'sbo', 'SalBow4G0074' => 'sbo', 'SalBow4G2635' => 'sbo', 'SalBow5G3010' => 'sbo', 'Sc05g0000870' => 'sci', 'Sc05g0000890' => 'sci', 'Sc13g0005000' => 'sci', 'Sc13g0005030' => 'sci', 'Sc19g0003790' => 'sci', 'Sc19g0003800' => 'sci', 'Sed0003467' => 'sed', 'Sed0009355' => 'sed', 'Sed0009894' => 'sed', 'Sed0011972' => 'sed', 'Sed0021483' => 'sed', 'Sed0021750' => 'sed', 'Sed0026279' => 'sed', 'SEGI_05312' => 'sgi', 'SEGI_10112' => 'sgi', 'SEGI_15835' => 'sgi', 'SEGI_30386' => 'sgi', 'SEGI_34122' => 'sgi', 'SEGI_35063' => 'sgi', 'SGA_v2.0_scaffold101G29794' => 'sas', 'SGA_v2.0_scaffold1G00573' => 'sas', 'SGA_v2.0_scaffold79G25637' => 'sas', 'SGA_v2.0_scaffold88G27283' => 'sas', 'SGA_v2.0_scaffold88G27285' => 'sas', 'SGA_v2.0_scaffold88G27331' => 'sas', 'SHI09937' => 'shi', 'SMO119G0302' => 'smo', 'SMO137G0231' => 'smo', 'SMO367G1151' => 'smo', 'Solyc02g082000.3' => 'sly', 'Solyc06g031670.3' => 'sly', 'Solyc06g053810.3' => 'sly', 'Solyc07g025457.1' => 'sly', 'Solyc08g059740.1' => 'sly', 'Solyc08g059750.3' => 'sly', 'Solyc09g083370.3' => 'sly', 'Solyc12g038950.3' => 'sly', 'Sopen02g026630' => 'spe', 'Sopen06g018930' => 'spe', 'Sopen06g018940' => 'spe', 'Sopen08g009460' => 'spe', 'Sopen09g032290' => 'spe', 'Sp1g03080' => 'spa', 'Sp1g03090' => 'spa', 'Sp1g05480' => 'spa', 'Sp2g07860' => 'spa', 'Sp2g08430' => 'spa', 'Sp2g08440' => 'spa', 'Sp2g26200' => 'spa', 'Sp4g13170' => 'spa', 'Sp6g33840' => 'spa', 'SpUn1204_0010' => 'spa', 'TAR365G0908' => 'tar', 'TAR381G1270' => 'tar', 'TAR381G1651' => 'tar', 'TAR625G1131' => 'tar', 'TAR633G0962' => 'tar', 'TAR633G1729' => 'tar', 'TAR633G1864' => 'tar', 'TAR636G0221' => 'tar', 'TAR636G0314' => 'tar', 'TAR636G3202' => 'tar', 'THA.LOC104800805' => 'tha', 'THA.LOC104801096' => 'tha', 'THA.LOC104801555' => 'tha', 'THA.LOC104808491' => 'tha', 'THA.LOC104808595' => 'tha', 'THA.LOC104815985' => 'tha', 'THA.LOC104822250' => 'tha', 'THA.LOC104826071' => 'tha', 'Thecc.01G265200' => 'tca', 'Thecc.01G265300' => 'tca', 'Thecc.01G265700' => 'tca', 'Thecc.03G109100' => 'tca', 'Thecc.04G245900' => 'tca', 'Thecc.04G246000' => 'tca', 'Thhalv10003334m.g' => 'esa', 'Thhalv10005508m.g' => 'esa', 'Thhalv10005643m.g' => 'esa', 'Thhalv10007316m.g' => 'esa', 'Thhalv10009006m.g' => 'esa', 'Thhalv10009309m.g' => 'esa', 'Thhalv10014917m.g' => 'esa', 'Thhalv10014919m.g' => 'esa', 'Thhalv10015393m.g' => 'esa', 'Thhalv10016515m.g' => 'esa', 'Thhalv10029242m.g' => 'esa', 'TPR.G16654' => 'tpr', 'TPR.G20589' => 'tpr', 'TPR.G23029' => 'tpr', 'TPR.G27731' => 'tpr', 'TPR.G28889' => 'tpr', 'TPR.G28899' => 'tpr', 'TPR.G30846' => 'tpr', 'TPR.G5452' => 'tpr', 'TPR.G5713' => 'tpr', 'TPR.G9046' => 'tpr', 'TPR.G9061' => 'tpr', 'TWI09G1075' => 'twi', 'TWI12G0806' => 'twi', 'TWI18G0108' => 'twi', 'TWI53G1361' => 'twi', 'TWI73G0185' => 'twi', 'TWI73G0427' => 'twi', 'unitig_37.g12001' => 'ugi', 'unitig_747.g21660' => 'ugi', 'unitig_748.g7232' => 'ugi', 'unitig_748.g7315' => 'ugi', 'unitig_85.g27262' => 'ugi', 'unitig_92.g28220' => 'ugi', 'vmacro02632' => 'vma', 'vmacro08410' => 'vma', 'vmacro08411' => 'vma', 'vmacro15407' => 'vma', 'VMungo0251G3619' => 'vmu', 'VMungo0720G1204' => 'vmu', 'VMungo0720G1918' => 'vmu', 'VMungo0720G2387' => 'vmu', 'VMungo0720G2961' => 'vmu', 'VMungo1215G2154' => 'vmu', 'VMungo1383G2411' => 'vmu', 'Zm00001eb051130' => 'zma', 'Zm00001eb116830' => 'zma', 'Zm00001eb116850' => 'zma', 'Zm00001eb151740' => 'zma', 'Zm00001eb292360' => 'zma', 'Zm00001eb301640' => 'zma' ) $gf_id = 'HOM05D000856' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000856' ) $data_identifier = 'HOM05D000856' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 13, 'ath' => (int) 10, 'atr' => (int) 1, 'acertr' => (int) 8, 'cqu' => (int) 6, 'bca' => (int) 21, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 11, 'car' => (int) 9, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 8, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 5, 'fan' => (int) 16, 'fve' => (int) 6, 'gma' => (int) 11, 'ghi' => (int) 19, 'gra' => (int) 9, 'vvi' => (int) 7, 'han' => (int) 17, 'cav' => (int) 5, 'hma' => (int) 2, 'vpl' => (int) 2, 'sun' => (int) 7, 'lal' => (int) 9, 'lja' => (int) 5, 'lonja' => (int) 9, 'lsa' => (int) 5, 'mes' => (int) 8, 'mpo' => (int) 3, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 10, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 15, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 9, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 9, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 6, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 5, 'spa' => (int) 10, 'tar' => (int) 10, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 11, 'tpr' => (int) 11, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 4, 'vmu' => (int) 7, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb301640' $species_info = array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ) $local_species = 'ama' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000856', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p00010' => 'bna', 'A03p04160' => 'bna', 'A03p17160' => 'bna', 'A04p23370' => 'bna', 'A05p14860' => 'bna', 'A08p37020' => 'bna', 'A09p08050' => 'bna', 'A09p66800' => 'bna', 'A09p67940' => 'bna', 'A10p02680' => 'bna', 'A10p05320' => 'bna', 'Aa31LG1G20560' => 'aar', 'Aa31LG1G20610' => 'aar', 'Aa31LG1G7810' => 'aar', 'Aa31LG5G3590' => 'aar', 'Aa31LG5G6140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3819' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4683' => 'aag', 'Actinidia04480' => 'ach', 'Actinidia05466' => 'ach', 'Actinidia08445' => 'ach', 'Actinidia21170' => 'ach', 'Actinidia24812' => 'ach', 'Actinidia24951' => 'ach', 'Actinidia40088' => 'ach', 'Ah.02g111660' => 'amhyb', 'Ah.11g048900' => 'amhyb', 'Ah.11g049910' => 'amhyb', 'AL1G13870' => 'aly', 'AL1G13880' => 'aly', 'AL1G16760' => 'aly', 'AL390U10020' => 'aly', 'AL4G25520' => 'aly', 'AL6G19890' => 'aly', 'AL6G19900' => 'aly', 'AL6G19910' => 'aly', 'AL8G40100' => 'aly', 'Aqoxy2G03562' => 'aox', 'Aqoxy5G00316' => 'aox', 'Aqoxy5G00926' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1628KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1H403S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2FU6SJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.882I6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8YRY2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YN1SN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AF70II' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZA8L1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F916KL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHRD8H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KTZ8QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S22EMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8M29T' => 'arhy', 'AT1G04270' => 'ath', 'AT1G04280' => 'ath', 'AT1G06750' => 'ath', 'AT1G33850' => 'ath', 'AT2G30630' => 'ath', 'AT5G09490' => 'ath', 'AT5G09500' => 'ath', 'AT5G09510' => 'ath', 'AT5G43640' => 'ath', 'AT5G63070' => 'ath', 'ATR0605G315' => 'atr', 'Atru.chr11.175' => 'acertr', 'Atru.chr11.653' => 'acertr', 'Atru.chr3.1616' => 'acertr', 'Atru.chr4.2230' => 'acertr', 'Atru.chr4.2232' => 'acertr', 'Atru.chr5.1598' => 'acertr', 'Atru.chr5.1600' => 'acertr', 'Atru.chr5.2188' => 'acertr', 'AUR62008326' => 'cqu', 'AUR62011922' => 'cqu', 'AUR62011924' => 'cqu', 'AUR62021771' => 'cqu', 'AUR62032237' => 'cqu', 'AUR62032240' => 'cqu', 'BcaB01g05572' => 'bca', 'BcaB02g10337' => 'bca', 'BcaB04g19944' => 'bca', 'BcaB05g21548' => 'bca', 'BcaB05g21549' => 'bca', 'BcaB05g23227' => 'bca', 'BcaB06g26256' => 'bca', 'BcaB06g26257' => 'bca', 'BcaB06g28379' => 'bca', 'BcaC02g11159' => 'bca', 'BcaC03g13258' => 'bca', 'BcaC03g13259' => 'bca', 'BcaC05g24456' => 'bca', 'BcaC05g24457' => 'bca', 'BcaC07g36922' => 'bca', 'BcaC07g36923' => 'bca', 'BcaC07g42050' => 'bca', 'BcaC07g42176' => 'bca', 'BcaC07g42195' => 'bca', 'BcaC07g42196' => 'bca', 'BcaNung06674' => 'bca', 'BolC2t06351H' => 'bol', 'BolC2t06352H' => 'bol', 'BolC3t12993H' => 'bol', 'BolC4t23525H' => 'bol', 'BolC4t27475H' => 'bol', 'BolC5t29025H' => 'bol', 'BolC5t29026H' => 'bol', 'BolC8t46898H' => 'bol', 'BolC8t46899H' => 'bol', 'BolC8t52630H' => 'bol', 'BolC8t52765H' => 'bol', 'BolC9t53824H' => 'bol', 'BraA03t09760Z' => 'bra', 'BraA03t10990Z' => 'bra', 'BraA05t20413Z' => 'bra', 'BraA08t35602Z' => 'bra', 'BraA09t36458Z' => 'bra', 'BraA09t42018Z' => 'bra', 'BraA09t42129Z' => 'bra', 'BraA10t42536Z' => 'bra', 'BraA10t42537Z' => 'bra', 'C01p10690' => 'bna', 'C02p03890' => 'bna', 'C02p03900' => 'bna', 'C03p04620' => 'bna', 'C04p19870' => 'bna', 'C04p59670' => 'bna', 'C05p02460' => 'bna', 'C05p02470' => 'bna', 'C08p00980' => 'bna', 'C08p00990' => 'bna', 'C08p51030' => 'bna', 'C08p52360' => 'bna', 'C09p09120' => 'bna', 'CAN.G19.15' => 'can', 'CAN.G251.10' => 'can', 'CAN.G251.9' => 'can', 'CAN.G398.24' => 'can', 'CAN.G410.32' => 'can', 'CAN.G881.2' => 'can', 'CANSAT01G3025' => 'cansat', 'CANSAT78G1211' => 'cansat', 'CANSAT78G1218' => 'cansat', 'CANSAT78G1521' => 'cansat', 'CANSAT78G1670' => 'cansat', 'CARHR003600' => 'chi', 'CARHR003610' => 'chi', 'CARHR006290' => 'chi', 'CARHR006430' => 'chi', 'CARHR124110' => 'chi', 'CARHR203870' => 'chi', 'CARHR203880' => 'chi', 'CARHR203890' => 'chi', 'CARHR276880' => 'chi', 'Carub.0001s0346' => 'cru', 'Carub.0001s0347' => 'cru', 'Carub.0001s0607' => 'cru', 'Carub.0003s2768' => 'cru', 'Carub.0003s2769' => 'cru', 'Carub.0004s1178' => 'cru', 'Carub.0006s0806' => 'cru', 'Carub.0006s0807' => 'cru', 'Carub.0006s0808' => 'cru', 'Carub.0008s0501' => 'cru', 'Carub.0008s2379' => 'cru', 'Ca_08655_v3' => 'car', 'Ca_08922_v3' => 'car', 'Ca_08923_v3' => 'car', 'Ca_09119_v3' => 'car', 'Ca_09703_v3' => 'car', 'Ca_09705_v3' => 'car', 'Ca_09835_v3' => 'car', 'Ca_26403_v3' => 'car', 'Ca_30719_v3' => 'car', 'CBR_g17958' => 'cbr', 'CBR_g40516' => 'cbr', 'Cc00_g05350' => 'ccan', 'Cc01_g18690' => 'ccan', 'Cc03_g04830' => 'ccan', 'Cc03_g04850' => 'ccan', 'CDE02G4469' => 'cde', 'CDE06G0883' => 'cde', 'CDE06G1295' => 'cde', 'CDE06G1390' => 'cde', 'CDE07G0584' => 'cde', 'CDE07G1084' => 'cde', 'CDE08G1259' => 'cde', 'Cfa002341' => 'cfa', 'Cfa024337' => 'cfa', 'Ciclev10004749m.g' => 'ccl', 'Ciclev10006127m.g' => 'ccl', 'Ciclev10019720m.g' => 'ccl', 'Ciclev10022652m.g' => 'ccl', 'CiPaw.01G190400' => 'cil', 'CiPaw.01G190500' => 'cil', 'CiPaw.02G116400' => 'cil', 'CiPaw.02G116500' => 'cil', 'CiPaw.04G183000' => 'cil', 'CiPaw.04G183300' => 'cil', 'ClCG05G004610' => 'cla', 'ClCG05G004620' => 'cla', 'ClCG06G006730' => 'cla', 'ClCG06G006740' => 'cla', 'ClCG11G003690' => 'cla', 'COL.COLO4_08276' => 'col', 'COL.COLO4_08277' => 'col', 'COL.COLO4_15787' => 'col', 'COL.COLO4_15789' => 'col', 'Cpa.g.c44815' => 'cpa', 'Cpa.g.sc52.144' => 'cpa', 'Cpa.g.sc58.46' => 'cpa', 'Cpa.g.sc58.47' => 'cpa', 'Cre08.g360900' => 'cre', 'CsaV3_2G013030' => 'csa', 'CsaV3_2G013050' => 'csa', 'CsaV3_2G015620' => 'csa', 'CsaV3_3G012590' => 'csa', 'CsaV3_3G012600' => 'csa', 'CSS0001641' => 'camsi', 'CSS0008310' => 'camsi', 'CSS0013011' => 'camsi', 'CSS0017147' => 'camsi', 'CSS0022970' => 'camsi', 'CSS0025655' => 'camsi', 'CSS0028665' => 'camsi', 'CSS0029117' => 'camsi', 'CSS0032024' => 'camsi', 'CSS0039681' => 'camsi', 'CSS0046516' => 'camsi', 'CSS0050307' => 'camsi', 'DCAR_005871' => 'dca', 'DCAR_007342' => 'dca', 'DCAR_024228' => 'dca', 'DCAR_027277' => 'dca', 'DCAR_030718' => 'dca', 'Dinv20287' => 'din', 'Dinv22461' => 'din', 'Dinv22464' => 'din', 'Dinv29912' => 'din', 'Dinv29913' => 'din', 'Dinv34580' => 'din', 'Dinv34582' => 'din', 'Dinv44632' => 'din', 'Duzib052G0266' => 'dzi', 'Duzib133G0907' => 'dzi', 'Duzib133G1034' => 'dzi', 'Duzib138G0207' => 'dzi', 'Duzib138G0491' => 'dzi', 'Duzib151G0812' => 'dzi', 'Duzib151G1166' => 'dzi', 'Duzib168G0192' => 'dzi', 'Duzib211G0077' => 'dzi', 'Duzib212G0429' => 'dzi', 'Duzib212G0472' => 'dzi', 'ECA233G2617' => 'eca', 'ECA236G4188' => 'eca', 'ECA240G0936' => 'eca', 'ECA240G1129' => 'eca', 'ECA247G0623' => 'eca', 'EL10Ac5g10451' => 'bvu', 'EL10Ac5g10453' => 'bvu', 'EL10Ac5g10894' => 'bvu', 'Eucgr.H00192' => 'egr', 'Eucgr.H00193' => 'egr', 'Eucgr.H00194' => 'egr', 'Eucgr.J01562' => 'egr', 'Eucgr.K03301' => 'egr', 'FAN02G0632' => 'fan', 'FAN05G5378' => 'fan', 'FAN09G3247' => 'fan', 'FAN12G0435' => 'fan', 'FAN12G2426' => 'fan', 'FAN14G1707' => 'fan', 'FAN14G4725' => 'fan', 'FAN15G2071' => 'fan', 'FAN17G3065' => 'fan', 'FAN19G1376' => 'fan', 'FAN20G0354' => 'fan', 'FAN20G2429' => 'fan', 'FAN20G2658' => 'fan', 'FAN24G2343' => 'fan', 'FAN27G2362' => 'fan', 'FAN28G1765' => 'fan', 'FvH4_1g16020' => 'fve', 'FvH4_2g04890' => 'fve', 'FvH4_2g22270' => 'fve', 'FvH4_4g02630' => 'fve', 'FvH4_4g02640' => 'fve', 'FvH4_6g02650' => 'fve', 'Glyma.02G140600' => 'gma', 'Glyma.03G159900' => 'gma', 'Glyma.05G234800' => 'gma', 'Glyma.07G269600' => 'gma', 'Glyma.08G042300' => 'gma', 'Glyma.10G033500' => 'gma', 'Glyma.10G185200' => 'gma', 'Glyma.17G004300' => 'gma', 'Glyma.19G161900' => 'gma', 'Glyma.20G205100' => 'gma', 'Glyma.20G205200' => 'gma', 'Gohir.A01G139101' => 'ghi', 'Gohir.A02G035600' => 'ghi', 'Gohir.A02G117901' => 'ghi', 'Gohir.A07G210100' => 'ghi', 'Gohir.A07G210200' => 'ghi', 'Gohir.A08G061100' => 'ghi', 'Gohir.A09G223000' => 'ghi', 'Gohir.A09G223100' => 'ghi', 'Gohir.A10G113900' => 'ghi', 'Gohir.A10G114000' => 'ghi', 'Gohir.D02G042300' => 'ghi', 'Gohir.D07G216100' => 'ghi', 'Gohir.D07G216200' => 'ghi', 'Gohir.D08G070400' => 'ghi', 'Gohir.D09G225000' => 'ghi', 'Gohir.D09G225100' => 'ghi', 'Gohir.D10G152300' => 'ghi', 'Gohir.D10G153200' => 'ghi', 'Gohir.D11G133701' => 'ghi', 'Gorai.004G074100' => 'gra', 'Gorai.005G046800' => 'gra', 'Gorai.006G246500' => 'gra', 'Gorai.006G246600' => 'gra', 'Gorai.007G142900' => 'gra', 'Gorai.011G171000' => 'gra', 'Gorai.011G171100' => 'gra', 'Gorai.013G104300' => 'gra', 'Gorai.013G104400' => 'gra', 'GSVIVG01000754001' => 'vvi', 'GSVIVG01000756001' => 'vvi', 'GSVIVG01010903001' => 'vvi', 'GSVIVG01017623001' => 'vvi', 'GSVIVG01018113001' => 'vvi', 'GSVIVG01018116001' => 'vvi', 'GSVIVG01018118001' => 'vvi', 'HanXRQChr03g0076211' => 'han', 'HanXRQChr03g0092431' => 'han', 'HanXRQChr03g0092441' => 'han', 'HanXRQChr03g0092591' => 'han', 'HanXRQChr03g0092671' => 'han', 'HanXRQChr03g0092681' => 'han', 'HanXRQChr03g0092691' => 'han', 'HanXRQChr03g0092701' => 'han', 'HanXRQChr03g0092721' => 'han', 'HanXRQChr03g0092731' => 'han', 'HanXRQChr04g0113681' => 'han', 'HanXRQChr10g0281371' => 'han', 'HanXRQChr11g0337141' => 'han', 'HanXRQChr13g0424521' => 'han', 'HanXRQChr13g0424531' => 'han', 'HanXRQChr13g0424541' => 'han', 'HanXRQChr16g0498221' => 'han', 'Haze_04377' => 'cav', 'Haze_11298' => 'cav', 'Haze_24547' => 'cav', 'Haze_24550' => 'cav', 'Haze_26587' => 'cav', 'Hma1.2p1_0650F.1_g195410' => 'hma', 'Hma1.2p1_0893F.1_g233470' => 'hma', 'HPP92_006508' => 'vpl', 'HPP92_024780' => 'vpl', 'Hund02688' => 'sun', 'Hund09380' => 'sun', 'Hund09381' => 'sun', 'Hund09832' => 'sun', 'Hund09833' => 'sun', 'Hund11351' => 'sun', 'Hund11513' => 'sun', 'Lalb_Chr06g0162591' => 'lal', 'Lalb_Chr06g0162601' => 'lal', 'Lalb_Chr06g0169321' => 'lal', 'Lalb_Chr09g0330951' => 'lal', 'Lalb_Chr16g0387631' => 'lal', 'Lalb_Chr21g0306241' => 'lal', 'Lalb_Chr25g0290051' => 'lal', 'Lalb_Chr25g0290061' => 'lal', 'Lalb_Chr25g0290071' => 'lal', 'Lj1g0003876' => 'lja', 'Lj1P1207T36' => 'lonja', 'Lj2C1156G12' => 'lonja', 'Lj3A793G39' => 'lonja', 'Lj3C580G2' => 'lonja', 'Lj3C780G2' => 'lonja', 'Lj3C780T4' => 'lonja', 'Lj3C793G9' => 'lonja', 'Lj4g0012960' => 'lja', 'Lj5g0021252' => 'lja', 'Lj5g0021484' => 'lja', 'Lj5g0024528' => 'lja', 'Lj6A399T12' => 'lonja', 'Lj6A656G65' => 'lonja', 'Lsat_1_v5_gn_3_125500' => 'lsa', 'Lsat_1_v5_gn_3_125540' => 'lsa', 'Lsat_1_v5_gn_5_72701' => 'lsa', 'Lsat_1_v5_gn_8_91560' => 'lsa', 'Lsat_1_v5_gn_9_9640' => 'lsa', 'Manes.01G200600' => 'mes', 'Manes.01G200700' => 'mes', 'Manes.03G168900' => 'mes', 'Manes.03G169000' => 'mes', 'Manes.05G085801' => 'mes', 'Manes.05G086200' => 'mes', 'Manes.15G036700' => 'mes', 'Manes.15G036900' => 'mes', 'Mapoly0004s0172' => 'mpo', 'Mapoly0023s0001' => 'mpo', 'Mapoly0142s0012' => 'mpo', 'MBI01_g32854_MAGBIO' => 'mbi', 'MBI11_g24427_MAGBIO' => 'mbi', 'MBI11_g47319_MAGBIO' => 'mbi', 'MCO01G433' => 'mco', 'MD00G1187800' => 'mdo', 'MD04G1226500' => 'mdo', 'MD05G1203900' => 'mdo', 'MD10G1191100' => 'mdo', 'MD12G1243500' => 'mdo', 'MD13G1207000' => 'mdo', 'MD13G1207100' => 'mdo', 'MD16G1208600' => 'mdo', 'Medtr1g050352' => 'mtr', 'Medtr1g070385' => 'mtr', 'Medtr1g070450' => 'mtr', 'Medtr1g075200' => 'mtr', 'Medtr1g075250' => 'mtr', 'Medtr1g075260' => 'mtr', 'Medtr1g475250' => 'mtr', 'Medtr4g075450' => 'mtr', 'Medtr7g096300' => 'mtr', 'Medtr8g105110' => 'mtr', 'MELO3C006470.2' => 'cme', 'MELO3C006471.2' => 'cme', 'MELO3C020772.2' => 'cme', 'MELO3C026780.2' => 'cme', 'MELO3C026781.2' => 'cme', 'Migut.D00390' => 'egut', 'Migut.G00435' => 'egut', 'Migut.G00436' => 'egut', 'Migut.G00718' => 'egut', 'MSTRG.21891' => 'ama', 'MSTRG.26910' => 'ama', 'MSTRG.4099' => 'ama', 'MSTRG.9925' => 'ama', 'Nitab4.5_0000165g0010' => 'nta', 'Nitab4.5_0000209g0180' => 'nta', 'Nitab4.5_0000244g0440' => 'nta', 'Nitab4.5_0000525g0220' => 'nta', 'Nitab4.5_0001597g0020' => 'nta', 'Nitab4.5_0001878g0040' => 'nta', 'Nitab4.5_0001878g0060' => 'nta', 'Nitab4.5_0002838g0100' => 'nta', 'Nitab4.5_0002838g0120' => 'nta', 'Nitab4.5_0004798g0030' => 'nta', 'Nitab4.5_0005420g0010' => 'nta', 'Nitab4.5_0005507g0010' => 'nta', 'Nitab4.5_0005574g0020' => 'nta', 'Nitab4.5_0005838g0010' => 'nta', 'Nitab4.5_0010580g0020' => 'nta', 'Nn1g02599' => 'nnu', 'Nn1g02608' => 'nnu', 'Nn3g17742' => 'nnu', 'Nn3g19534' => 'nnu', 'Nn3g19535' => 'nnu', 'Oeu008790.1' => 'oeu', 'Oeu008792.1' => 'oeu', 'Oeu032590.1' => 'oeu', 'Oeu035349.1' => 'oeu', 'Oeu049791.1' => 'oeu', 'Os01g0774500' => 'osa', 'Os03g0628800' => 'osa', 'Os03g0798600' => 'osa', 'Os05g0508800' => 'osa', 'Peaxi162Scf00036g02018' => 'pax', 'Peaxi162Scf00578g00032' => 'pax', 'Peaxi162Scf00578g00317' => 'pax', 'Peaxi162Scf00785g00114' => 'pax', 'Peaxi162Scf00813g00119' => 'pax', 'Peaxi162Scf00906g00227' => 'pax', 'PGR004G0875' => 'pgr', 'PGR004G2424' => 'pgr', 'PGR031G1239' => 'pgr', 'PGR031G2474' => 'pgr', 'PGR044G0423' => 'pgr', 'PGSC0003DMG400001128' => 'stu', 'PGSC0003DMG400007336' => 'stu', 'PGSC0003DMG400016318' => 'stu', 'PGSC0003DMG400016319' => 'stu', 'PGSC0003DMG400018074' => 'stu', 'Phvul.001G157700' => 'pvu', 'Phvul.002G148550' => 'pvu', 'Phvul.002G320200' => 'pvu', 'Phvul.003G089200' => 'pvu', 'Phvul.007G126000' => 'pvu', 'Phvul.007G126100' => 'pvu', 'Phvul.007G178000' => 'pvu', 'Phvul.007G178200' => 'pvu', 'Potri.002G043000' => 'ptr', 'Potri.002G043200' => 'ptr', 'Potri.003G123750' => 'ptr', 'Potri.005G055401' => 'ptr', 'Potri.005G219700' => 'ptr', 'Potri.005G220000' => 'ptr', 'Potri.008G161901' => 'ptr', 'Potri.008G162000' => 'ptr', 'Potri.008G162400' => 'ptr', 'Potri.010G076900' => 'ptr', 'Pp3c12_9180' => 'ppa', 'Pp3c13_19770' => 'ppa', 'Pp3c14_22950' => 'ppa', 'Pp3c16_12160' => 'ppa', 'Pp3c27_7820' => 'ppa', 'Pp3c2_3490' => 'ppa', 'Pp3c3_23700' => 'ppa', 'Pp3c3_36520' => 'ppa', 'Pp3c4_15250' => 'ppa', 'PRCOL_00007002' => 'pco', 'Prupe.1G030600' => 'ppe', 'Prupe.1G030700' => 'ppe', 'Prupe.6G345200' => 'ppe', 'Prupe.8G230300' => 'ppe', 'Prupe.8G230500' => 'ppe', 'Psat3g059600' => 'psa', 'Psat5g200920' => 'psa', 'Psat6g056440' => 'psa', 'Psat6g057360' => 'psa', 'Psat6g134120' => 'psa', 'Psat6g134160' => 'psa', 'Psat7g008640' => 'psa', 'Psat7g185240' => 'psa', 'PSO017G1330' => 'pso', 'PSO063G6097' => 'pso', 'PSO170G0835' => 'pso', 'PSO170G2499' => 'pso', 'PSO210G5058' => 'pso', 'PSO210G6154' => 'pso', 'PSO585G0031' => 'pso', 'PSO832G0264' => 'pso', 'PSO832G4288' => 'pso', 'QL03p027355' => 'qlo', 'QL03p027430' => 'qlo', 'QL04p081380' => 'qlo', 'QL06p015642' => 'qlo', 'QL06p015650' => 'qlo', 'QL06p015686' => 'qlo', 'QL12p042927' => 'qlo', 'QL93p1863_0035' => 'qlo', 'RcHm_v2.0_Chr3g0450581' => 'rch', 'RcHm_v2.0_Chr4g0390371' => 'rch', 'RcHm_v2.0_Chr4g0390381' => 'rch', 'RcHm_v2.0_Chr4g0390491' => 'rch', 'RcHm_v2.0_Chr4g0390501' => 'rch', 'RcHm_v2.0_Chr6g0289231' => 'rch', 'Rhsim04G0190400' => 'rsi', 'Rhsim04G0190500' => 'rsi', 'Rhsim04G0190600' => 'rsi', 'Rhsim13G0031400' => 'rsi', 'Rhsim13G0165600' => 'rsi', 'RhsimUnG0114600' => 'rsi', 'RhsimUnG0114700' => 'rsi', 'Sabra02G0034800' => 'sbr', 'Sabra02G0035100' => 'sbr', 'Sabra05G0168600' => 'sbr', 'Sabra05G0168800' => 'sbr', 'Sabra08G0123700' => 'sbr', 'Sabra10G0031900' => 'sbr', 'Sabra13G0039000' => 'sbr', 'SalBow2G0782' => 'sbo', 'SalBow2G1403' => 'sbo', 'SalBow4G0074' => 'sbo', 'SalBow4G2635' => 'sbo', 'SalBow5G3010' => 'sbo', 'Sc05g0000870' => 'sci', 'Sc05g0000890' => 'sci', 'Sc13g0005000' => 'sci', 'Sc13g0005030' => 'sci', 'Sc19g0003790' => 'sci', 'Sc19g0003800' => 'sci', 'Sed0003467' => 'sed', 'Sed0009355' => 'sed', 'Sed0009894' => 'sed', 'Sed0011972' => 'sed', 'Sed0021483' => 'sed', 'Sed0021750' => 'sed', 'Sed0026279' => 'sed', 'SEGI_05312' => 'sgi', 'SEGI_10112' => 'sgi', 'SEGI_15835' => 'sgi', 'SEGI_30386' => 'sgi', 'SEGI_34122' => 'sgi', 'SEGI_35063' => 'sgi', 'SGA_v2.0_scaffold101G29794' => 'sas', 'SGA_v2.0_scaffold1G00573' => 'sas', 'SGA_v2.0_scaffold79G25637' => 'sas', 'SGA_v2.0_scaffold88G27283' => 'sas', 'SGA_v2.0_scaffold88G27285' => 'sas', 'SGA_v2.0_scaffold88G27331' => 'sas', 'SHI09937' => 'shi', 'SMO119G0302' => 'smo', 'SMO137G0231' => 'smo', 'SMO367G1151' => 'smo', 'Solyc02g082000.3' => 'sly', 'Solyc06g031670.3' => 'sly', 'Solyc06g053810.3' => 'sly', 'Solyc07g025457.1' => 'sly', 'Solyc08g059740.1' => 'sly', 'Solyc08g059750.3' => 'sly', 'Solyc09g083370.3' => 'sly', 'Solyc12g038950.3' => 'sly', 'Sopen02g026630' => 'spe', 'Sopen06g018930' => 'spe', 'Sopen06g018940' => 'spe', 'Sopen08g009460' => 'spe', 'Sopen09g032290' => 'spe', 'Sp1g03080' => 'spa', 'Sp1g03090' => 'spa', 'Sp1g05480' => 'spa', 'Sp2g07860' => 'spa', 'Sp2g08430' => 'spa', 'Sp2g08440' => 'spa', 'Sp2g26200' => 'spa', 'Sp4g13170' => 'spa', 'Sp6g33840' => 'spa', 'SpUn1204_0010' => 'spa', 'TAR365G0908' => 'tar', 'TAR381G1270' => 'tar', 'TAR381G1651' => 'tar', 'TAR625G1131' => 'tar', 'TAR633G0962' => 'tar', 'TAR633G1729' => 'tar', 'TAR633G1864' => 'tar', 'TAR636G0221' => 'tar', 'TAR636G0314' => 'tar', 'TAR636G3202' => 'tar', 'THA.LOC104800805' => 'tha', 'THA.LOC104801096' => 'tha', 'THA.LOC104801555' => 'tha', 'THA.LOC104808491' => 'tha', 'THA.LOC104808595' => 'tha', 'THA.LOC104815985' => 'tha', 'THA.LOC104822250' => 'tha', 'THA.LOC104826071' => 'tha', 'Thecc.01G265200' => 'tca', 'Thecc.01G265300' => 'tca', 'Thecc.01G265700' => 'tca', 'Thecc.03G109100' => 'tca', 'Thecc.04G245900' => 'tca', 'Thecc.04G246000' => 'tca', 'Thhalv10003334m.g' => 'esa', 'Thhalv10005508m.g' => 'esa', 'Thhalv10005643m.g' => 'esa', 'Thhalv10007316m.g' => 'esa', 'Thhalv10009006m.g' => 'esa', 'Thhalv10009309m.g' => 'esa', 'Thhalv10014917m.g' => 'esa', 'Thhalv10014919m.g' => 'esa', 'Thhalv10015393m.g' => 'esa', 'Thhalv10016515m.g' => 'esa', 'Thhalv10029242m.g' => 'esa', 'TPR.G16654' => 'tpr', 'TPR.G20589' => 'tpr', 'TPR.G23029' => 'tpr', 'TPR.G27731' => 'tpr', 'TPR.G28889' => 'tpr', 'TPR.G28899' => 'tpr', 'TPR.G30846' => 'tpr', 'TPR.G5452' => 'tpr', 'TPR.G5713' => 'tpr', 'TPR.G9046' => 'tpr', 'TPR.G9061' => 'tpr', 'TWI09G1075' => 'twi', 'TWI12G0806' => 'twi', 'TWI18G0108' => 'twi', 'TWI53G1361' => 'twi', 'TWI73G0185' => 'twi', 'TWI73G0427' => 'twi', 'unitig_37.g12001' => 'ugi', 'unitig_747.g21660' => 'ugi', 'unitig_748.g7232' => 'ugi', 'unitig_748.g7315' => 'ugi', 'unitig_85.g27262' => 'ugi', 'unitig_92.g28220' => 'ugi', 'vmacro02632' => 'vma', 'vmacro08410' => 'vma', 'vmacro08411' => 'vma', 'vmacro15407' => 'vma', 'VMungo0251G3619' => 'vmu', 'VMungo0720G1204' => 'vmu', 'VMungo0720G1918' => 'vmu', 'VMungo0720G2387' => 'vmu', 'VMungo0720G2961' => 'vmu', 'VMungo1215G2154' => 'vmu', 'VMungo1383G2411' => 'vmu', 'Zm00001eb051130' => 'zma', 'Zm00001eb116830' => 'zma', 'Zm00001eb116850' => 'zma', 'Zm00001eb151740' => 'zma', 'Zm00001eb292360' => 'zma', 'Zm00001eb301640' => 'zma' ), 'gf_id' => 'HOM05D000856', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000856' ), 'data_identifier' => 'HOM05D000856', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000856', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p00010' => 'bna', 'A03p04160' => 'bna', 'A03p17160' => 'bna', 'A04p23370' => 'bna', 'A05p14860' => 'bna', 'A08p37020' => 'bna', 'A09p08050' => 'bna', 'A09p66800' => 'bna', 'A09p67940' => 'bna', 'A10p02680' => 'bna', 'A10p05320' => 'bna', 'Aa31LG1G20560' => 'aar', 'Aa31LG1G20610' => 'aar', 'Aa31LG1G7810' => 'aar', 'Aa31LG5G3590' => 'aar', 'Aa31LG5G6140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3819' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4683' => 'aag', 'Actinidia04480' => 'ach', 'Actinidia05466' => 'ach', 'Actinidia08445' => 'ach', 'Actinidia21170' => 'ach', 'Actinidia24812' => 'ach', 'Actinidia24951' => 'ach', 'Actinidia40088' => 'ach', 'Ah.02g111660' => 'amhyb', 'Ah.11g048900' => 'amhyb', 'Ah.11g049910' => 'amhyb', 'AL1G13870' => 'aly', 'AL1G13880' => 'aly', 'AL1G16760' => 'aly', 'AL390U10020' => 'aly', 'AL4G25520' => 'aly', 'AL6G19890' => 'aly', 'AL6G19900' => 'aly', 'AL6G19910' => 'aly', 'AL8G40100' => 'aly', 'Aqoxy2G03562' => 'aox', 'Aqoxy5G00316' => 'aox', 'Aqoxy5G00926' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1628KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1H403S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2FU6SJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.882I6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8YRY2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YN1SN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AF70II' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZA8L1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F916KL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHRD8H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KTZ8QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S22EMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8M29T' => 'arhy', 'AT1G04270' => 'ath', 'AT1G04280' => 'ath', 'AT1G06750' => 'ath', 'AT1G33850' => 'ath', 'AT2G30630' => 'ath', 'AT5G09490' => 'ath', 'AT5G09500' => 'ath', 'AT5G09510' => 'ath', 'AT5G43640' => 'ath', 'AT5G63070' => 'ath', 'ATR0605G315' => 'atr', 'Atru.chr11.175' => 'acertr', 'Atru.chr11.653' => 'acertr', 'Atru.chr3.1616' => 'acertr', 'Atru.chr4.2230' => 'acertr', 'Atru.chr4.2232' => 'acertr', 'Atru.chr5.1598' => 'acertr', 'Atru.chr5.1600' => 'acertr', 'Atru.chr5.2188' => 'acertr', 'AUR62008326' => 'cqu', 'AUR62011922' => 'cqu', 'AUR62011924' => 'cqu', 'AUR62021771' => 'cqu', 'AUR62032237' => 'cqu', 'AUR62032240' => 'cqu', 'BcaB01g05572' => 'bca', 'BcaB02g10337' => 'bca', 'BcaB04g19944' => 'bca', 'BcaB05g21548' => 'bca', 'BcaB05g21549' => 'bca', 'BcaB05g23227' => 'bca', 'BcaB06g26256' => 'bca', 'BcaB06g26257' => 'bca', 'BcaB06g28379' => 'bca', 'BcaC02g11159' => 'bca', 'BcaC03g13258' => 'bca', 'BcaC03g13259' => 'bca', 'BcaC05g24456' => 'bca', 'BcaC05g24457' => 'bca', 'BcaC07g36922' => 'bca', 'BcaC07g36923' => 'bca', 'BcaC07g42050' => 'bca', 'BcaC07g42176' => 'bca', 'BcaC07g42195' => 'bca', 'BcaC07g42196' => 'bca', 'BcaNung06674' => 'bca', 'BolC2t06351H' => 'bol', 'BolC2t06352H' => 'bol', 'BolC3t12993H' => 'bol', 'BolC4t23525H' => 'bol', 'BolC4t27475H' => 'bol', 'BolC5t29025H' => 'bol', 'BolC5t29026H' => 'bol', 'BolC8t46898H' => 'bol', 'BolC8t46899H' => 'bol', 'BolC8t52630H' => 'bol', 'BolC8t52765H' => 'bol', 'BolC9t53824H' => 'bol', 'BraA03t09760Z' => 'bra', 'BraA03t10990Z' => 'bra', 'BraA05t20413Z' => 'bra', 'BraA08t35602Z' => 'bra', 'BraA09t36458Z' => 'bra', 'BraA09t42018Z' => 'bra', 'BraA09t42129Z' => 'bra', 'BraA10t42536Z' => 'bra', 'BraA10t42537Z' => 'bra', 'C01p10690' => 'bna', 'C02p03890' => 'bna', 'C02p03900' => 'bna', 'C03p04620' => 'bna', 'C04p19870' => 'bna', 'C04p59670' => 'bna', 'C05p02460' => 'bna', 'C05p02470' => 'bna', 'C08p00980' => 'bna', 'C08p00990' => 'bna', 'C08p51030' => 'bna', 'C08p52360' => 'bna', 'C09p09120' => 'bna', 'CAN.G19.15' => 'can', 'CAN.G251.10' => 'can', 'CAN.G251.9' => 'can', 'CAN.G398.24' => 'can', 'CAN.G410.32' => 'can', 'CAN.G881.2' => 'can', 'CANSAT01G3025' => 'cansat', 'CANSAT78G1211' => 'cansat', 'CANSAT78G1218' => 'cansat', 'CANSAT78G1521' => 'cansat', 'CANSAT78G1670' => 'cansat', 'CARHR003600' => 'chi', 'CARHR003610' => 'chi', 'CARHR006290' => 'chi', 'CARHR006430' => 'chi', 'CARHR124110' => 'chi', 'CARHR203870' => 'chi', 'CARHR203880' => 'chi', 'CARHR203890' => 'chi', 'CARHR276880' => 'chi', 'Carub.0001s0346' => 'cru', 'Carub.0001s0347' => 'cru', 'Carub.0001s0607' => 'cru', 'Carub.0003s2768' => 'cru', 'Carub.0003s2769' => 'cru', 'Carub.0004s1178' => 'cru', 'Carub.0006s0806' => 'cru', 'Carub.0006s0807' => 'cru', 'Carub.0006s0808' => 'cru', 'Carub.0008s0501' => 'cru', 'Carub.0008s2379' => 'cru', 'Ca_08655_v3' => 'car', 'Ca_08922_v3' => 'car', 'Ca_08923_v3' => 'car', 'Ca_09119_v3' => 'car', 'Ca_09703_v3' => 'car', 'Ca_09705_v3' => 'car', 'Ca_09835_v3' => 'car', 'Ca_26403_v3' => 'car', 'Ca_30719_v3' => 'car', 'CBR_g17958' => 'cbr', 'CBR_g40516' => 'cbr', 'Cc00_g05350' => 'ccan', 'Cc01_g18690' => 'ccan', 'Cc03_g04830' => 'ccan', 'Cc03_g04850' => 'ccan', 'CDE02G4469' => 'cde', 'CDE06G0883' => 'cde', 'CDE06G1295' => 'cde', 'CDE06G1390' => 'cde', 'CDE07G0584' => 'cde', 'CDE07G1084' => 'cde', 'CDE08G1259' => 'cde', 'Cfa002341' => 'cfa', 'Cfa024337' => 'cfa', 'Ciclev10004749m.g' => 'ccl', 'Ciclev10006127m.g' => 'ccl', 'Ciclev10019720m.g' => 'ccl', 'Ciclev10022652m.g' => 'ccl', 'CiPaw.01G190400' => 'cil', 'CiPaw.01G190500' => 'cil', 'CiPaw.02G116400' => 'cil', 'CiPaw.02G116500' => 'cil', 'CiPaw.04G183000' => 'cil', 'CiPaw.04G183300' => 'cil', 'ClCG05G004610' => 'cla', 'ClCG05G004620' => 'cla', 'ClCG06G006730' => 'cla', 'ClCG06G006740' => 'cla', 'ClCG11G003690' => 'cla', 'COL.COLO4_08276' => 'col', 'COL.COLO4_08277' => 'col', 'COL.COLO4_15787' => 'col', 'COL.COLO4_15789' => 'col', 'Cpa.g.c44815' => 'cpa', 'Cpa.g.sc52.144' => 'cpa', 'Cpa.g.sc58.46' => 'cpa', 'Cpa.g.sc58.47' => 'cpa', 'Cre08.g360900' => 'cre', 'CsaV3_2G013030' => 'csa', 'CsaV3_2G013050' => 'csa', 'CsaV3_2G015620' => 'csa', 'CsaV3_3G012590' => 'csa', 'CsaV3_3G012600' => 'csa', 'CSS0001641' => 'camsi', 'CSS0008310' => 'camsi', 'CSS0013011' => 'camsi', 'CSS0017147' => 'camsi', 'CSS0022970' => 'camsi', 'CSS0025655' => 'camsi', 'CSS0028665' => 'camsi', 'CSS0029117' => 'camsi', 'CSS0032024' => 'camsi', 'CSS0039681' => 'camsi', 'CSS0046516' => 'camsi', 'CSS0050307' => 'camsi', 'DCAR_005871' => 'dca', 'DCAR_007342' => 'dca', 'DCAR_024228' => 'dca', 'DCAR_027277' => 'dca', 'DCAR_030718' => 'dca', 'Dinv20287' => 'din', 'Dinv22461' => 'din', 'Dinv22464' => 'din', 'Dinv29912' => 'din', 'Dinv29913' => 'din', 'Dinv34580' => 'din', 'Dinv34582' => 'din', 'Dinv44632' => 'din', 'Duzib052G0266' => 'dzi', 'Duzib133G0907' => 'dzi', 'Duzib133G1034' => 'dzi', 'Duzib138G0207' => 'dzi', 'Duzib138G0491' => 'dzi', 'Duzib151G0812' => 'dzi', 'Duzib151G1166' => 'dzi', 'Duzib168G0192' => 'dzi', 'Duzib211G0077' => 'dzi', 'Duzib212G0429' => 'dzi', 'Duzib212G0472' => 'dzi', 'ECA233G2617' => 'eca', 'ECA236G4188' => 'eca', 'ECA240G0936' => 'eca', 'ECA240G1129' => 'eca', 'ECA247G0623' => 'eca', 'EL10Ac5g10451' => 'bvu', 'EL10Ac5g10453' => 'bvu', 'EL10Ac5g10894' => 'bvu', 'Eucgr.H00192' => 'egr', 'Eucgr.H00193' => 'egr', 'Eucgr.H00194' => 'egr', 'Eucgr.J01562' => 'egr', 'Eucgr.K03301' => 'egr', 'FAN02G0632' => 'fan', 'FAN05G5378' => 'fan', 'FAN09G3247' => 'fan', 'FAN12G0435' => 'fan', 'FAN12G2426' => 'fan', 'FAN14G1707' => 'fan', 'FAN14G4725' => 'fan', 'FAN15G2071' => 'fan', 'FAN17G3065' => 'fan', 'FAN19G1376' => 'fan', 'FAN20G0354' => 'fan', 'FAN20G2429' => 'fan', 'FAN20G2658' => 'fan', 'FAN24G2343' => 'fan', 'FAN27G2362' => 'fan', 'FAN28G1765' => 'fan', 'FvH4_1g16020' => 'fve', 'FvH4_2g04890' => 'fve', 'FvH4_2g22270' => 'fve', 'FvH4_4g02630' => 'fve', 'FvH4_4g02640' => 'fve', 'FvH4_6g02650' => 'fve', 'Glyma.02G140600' => 'gma', 'Glyma.03G159900' => 'gma', 'Glyma.05G234800' => 'gma', 'Glyma.07G269600' => 'gma', 'Glyma.08G042300' => 'gma', 'Glyma.10G033500' => 'gma', 'Glyma.10G185200' => 'gma', 'Glyma.17G004300' => 'gma', 'Glyma.19G161900' => 'gma', 'Glyma.20G205100' => 'gma', 'Glyma.20G205200' => 'gma', 'Gohir.A01G139101' => 'ghi', 'Gohir.A02G035600' => 'ghi', 'Gohir.A02G117901' => 'ghi', 'Gohir.A07G210100' => 'ghi', 'Gohir.A07G210200' => 'ghi', 'Gohir.A08G061100' => 'ghi', 'Gohir.A09G223000' => 'ghi', 'Gohir.A09G223100' => 'ghi', 'Gohir.A10G113900' => 'ghi', 'Gohir.A10G114000' => 'ghi', 'Gohir.D02G042300' => 'ghi', 'Gohir.D07G216100' => 'ghi', 'Gohir.D07G216200' => 'ghi', 'Gohir.D08G070400' => 'ghi', 'Gohir.D09G225000' => 'ghi', 'Gohir.D09G225100' => 'ghi', 'Gohir.D10G152300' => 'ghi', 'Gohir.D10G153200' => 'ghi', 'Gohir.D11G133701' => 'ghi', 'Gorai.004G074100' => 'gra', 'Gorai.005G046800' => 'gra', 'Gorai.006G246500' => 'gra', 'Gorai.006G246600' => 'gra', 'Gorai.007G142900' => 'gra', 'Gorai.011G171000' => 'gra', 'Gorai.011G171100' => 'gra', 'Gorai.013G104300' => 'gra', 'Gorai.013G104400' => 'gra', 'GSVIVG01000754001' => 'vvi', 'GSVIVG01000756001' => 'vvi', 'GSVIVG01010903001' => 'vvi', 'GSVIVG01017623001' => 'vvi', 'GSVIVG01018113001' => 'vvi', 'GSVIVG01018116001' => 'vvi', 'GSVIVG01018118001' => 'vvi', 'HanXRQChr03g0076211' => 'han', 'HanXRQChr03g0092431' => 'han', 'HanXRQChr03g0092441' => 'han', 'HanXRQChr03g0092591' => 'han', 'HanXRQChr03g0092671' => 'han', 'HanXRQChr03g0092681' => 'han', 'HanXRQChr03g0092691' => 'han', 'HanXRQChr03g0092701' => 'han', 'HanXRQChr03g0092721' => 'han', 'HanXRQChr03g0092731' => 'han', 'HanXRQChr04g0113681' => 'han', 'HanXRQChr10g0281371' => 'han', 'HanXRQChr11g0337141' => 'han', 'HanXRQChr13g0424521' => 'han', 'HanXRQChr13g0424531' => 'han', 'HanXRQChr13g0424541' => 'han', 'HanXRQChr16g0498221' => 'han', 'Haze_04377' => 'cav', 'Haze_11298' => 'cav', 'Haze_24547' => 'cav', 'Haze_24550' => 'cav', 'Haze_26587' => 'cav', 'Hma1.2p1_0650F.1_g195410' => 'hma', 'Hma1.2p1_0893F.1_g233470' => 'hma', 'HPP92_006508' => 'vpl', 'HPP92_024780' => 'vpl', 'Hund02688' => 'sun', 'Hund09380' => 'sun', 'Hund09381' => 'sun', 'Hund09832' => 'sun', 'Hund09833' => 'sun', 'Hund11351' => 'sun', 'Hund11513' => 'sun', 'Lalb_Chr06g0162591' => 'lal', 'Lalb_Chr06g0162601' => 'lal', 'Lalb_Chr06g0169321' => 'lal', 'Lalb_Chr09g0330951' => 'lal', 'Lalb_Chr16g0387631' => 'lal', 'Lalb_Chr21g0306241' => 'lal', 'Lalb_Chr25g0290051' => 'lal', 'Lalb_Chr25g0290061' => 'lal', 'Lalb_Chr25g0290071' => 'lal', 'Lj1g0003876' => 'lja', 'Lj1P1207T36' => 'lonja', 'Lj2C1156G12' => 'lonja', 'Lj3A793G39' => 'lonja', 'Lj3C580G2' => 'lonja', 'Lj3C780G2' => 'lonja', 'Lj3C780T4' => 'lonja', 'Lj3C793G9' => 'lonja', 'Lj4g0012960' => 'lja', 'Lj5g0021252' => 'lja', 'Lj5g0021484' => 'lja', 'Lj5g0024528' => 'lja', 'Lj6A399T12' => 'lonja', 'Lj6A656G65' => 'lonja', 'Lsat_1_v5_gn_3_125500' => 'lsa', 'Lsat_1_v5_gn_3_125540' => 'lsa', 'Lsat_1_v5_gn_5_72701' => 'lsa', 'Lsat_1_v5_gn_8_91560' => 'lsa', 'Lsat_1_v5_gn_9_9640' => 'lsa', 'Manes.01G200600' => 'mes', 'Manes.01G200700' => 'mes', 'Manes.03G168900' => 'mes', 'Manes.03G169000' => 'mes', 'Manes.05G085801' => 'mes', 'Manes.05G086200' => 'mes', 'Manes.15G036700' => 'mes', 'Manes.15G036900' => 'mes', 'Mapoly0004s0172' => 'mpo', 'Mapoly0023s0001' => 'mpo', 'Mapoly0142s0012' => 'mpo', 'MBI01_g32854_MAGBIO' => 'mbi', 'MBI11_g24427_MAGBIO' => 'mbi', 'MBI11_g47319_MAGBIO' => 'mbi', 'MCO01G433' => 'mco', 'MD00G1187800' => 'mdo', 'MD04G1226500' => 'mdo', 'MD05G1203900' => 'mdo', 'MD10G1191100' => 'mdo', 'MD12G1243500' => 'mdo', 'MD13G1207000' => 'mdo', 'MD13G1207100' => 'mdo', 'MD16G1208600' => 'mdo', 'Medtr1g050352' => 'mtr', 'Medtr1g070385' => 'mtr', 'Medtr1g070450' => 'mtr', 'Medtr1g075200' => 'mtr', 'Medtr1g075250' => 'mtr', 'Medtr1g075260' => 'mtr', 'Medtr1g475250' => 'mtr', 'Medtr4g075450' => 'mtr', 'Medtr7g096300' => 'mtr', 'Medtr8g105110' => 'mtr', 'MELO3C006470.2' => 'cme', 'MELO3C006471.2' => 'cme', 'MELO3C020772.2' => 'cme', 'MELO3C026780.2' => 'cme', 'MELO3C026781.2' => 'cme', 'Migut.D00390' => 'egut', 'Migut.G00435' => 'egut', 'Migut.G00436' => 'egut', 'Migut.G00718' => 'egut', 'MSTRG.21891' => 'ama', 'MSTRG.26910' => 'ama', 'MSTRG.4099' => 'ama', 'MSTRG.9925' => 'ama', 'Nitab4.5_0000165g0010' => 'nta', 'Nitab4.5_0000209g0180' => 'nta', 'Nitab4.5_0000244g0440' => 'nta', 'Nitab4.5_0000525g0220' => 'nta', 'Nitab4.5_0001597g0020' => 'nta', 'Nitab4.5_0001878g0040' => 'nta', 'Nitab4.5_0001878g0060' => 'nta', 'Nitab4.5_0002838g0100' => 'nta', 'Nitab4.5_0002838g0120' => 'nta', 'Nitab4.5_0004798g0030' => 'nta', 'Nitab4.5_0005420g0010' => 'nta', 'Nitab4.5_0005507g0010' => 'nta', 'Nitab4.5_0005574g0020' => 'nta', 'Nitab4.5_0005838g0010' => 'nta', 'Nitab4.5_0010580g0020' => 'nta', 'Nn1g02599' => 'nnu', 'Nn1g02608' => 'nnu', 'Nn3g17742' => 'nnu', 'Nn3g19534' => 'nnu', 'Nn3g19535' => 'nnu', 'Oeu008790.1' => 'oeu', 'Oeu008792.1' => 'oeu', 'Oeu032590.1' => 'oeu', 'Oeu035349.1' => 'oeu', 'Oeu049791.1' => 'oeu', 'Os01g0774500' => 'osa', 'Os03g0628800' => 'osa', 'Os03g0798600' => 'osa', 'Os05g0508800' => 'osa', 'Peaxi162Scf00036g02018' => 'pax', 'Peaxi162Scf00578g00032' => 'pax', 'Peaxi162Scf00578g00317' => 'pax', 'Peaxi162Scf00785g00114' => 'pax', 'Peaxi162Scf00813g00119' => 'pax', 'Peaxi162Scf00906g00227' => 'pax', 'PGR004G0875' => 'pgr', 'PGR004G2424' => 'pgr', 'PGR031G1239' => 'pgr', 'PGR031G2474' => 'pgr', 'PGR044G0423' => 'pgr', 'PGSC0003DMG400001128' => 'stu', 'PGSC0003DMG400007336' => 'stu', 'PGSC0003DMG400016318' => 'stu', 'PGSC0003DMG400016319' => 'stu', 'PGSC0003DMG400018074' => 'stu', 'Phvul.001G157700' => 'pvu', 'Phvul.002G148550' => 'pvu', 'Phvul.002G320200' => 'pvu', 'Phvul.003G089200' => 'pvu', 'Phvul.007G126000' => 'pvu', 'Phvul.007G126100' => 'pvu', 'Phvul.007G178000' => 'pvu', 'Phvul.007G178200' => 'pvu', 'Potri.002G043000' => 'ptr', 'Potri.002G043200' => 'ptr', 'Potri.003G123750' => 'ptr', 'Potri.005G055401' => 'ptr', 'Potri.005G219700' => 'ptr', 'Potri.005G220000' => 'ptr', 'Potri.008G161901' => 'ptr', 'Potri.008G162000' => 'ptr', 'Potri.008G162400' => 'ptr', 'Potri.010G076900' => 'ptr', 'Pp3c12_9180' => 'ppa', 'Pp3c13_19770' => 'ppa', 'Pp3c14_22950' => 'ppa', 'Pp3c16_12160' => 'ppa', 'Pp3c27_7820' => 'ppa', 'Pp3c2_3490' => 'ppa', 'Pp3c3_23700' => 'ppa', 'Pp3c3_36520' => 'ppa', 'Pp3c4_15250' => 'ppa', 'PRCOL_00007002' => 'pco', 'Prupe.1G030600' => 'ppe', 'Prupe.1G030700' => 'ppe', 'Prupe.6G345200' => 'ppe', 'Prupe.8G230300' => 'ppe', 'Prupe.8G230500' => 'ppe', 'Psat3g059600' => 'psa', 'Psat5g200920' => 'psa', 'Psat6g056440' => 'psa', 'Psat6g057360' => 'psa', 'Psat6g134120' => 'psa', 'Psat6g134160' => 'psa', 'Psat7g008640' => 'psa', 'Psat7g185240' => 'psa', 'PSO017G1330' => 'pso', 'PSO063G6097' => 'pso', 'PSO170G0835' => 'pso', 'PSO170G2499' => 'pso', 'PSO210G5058' => 'pso', 'PSO210G6154' => 'pso', 'PSO585G0031' => 'pso', 'PSO832G0264' => 'pso', 'PSO832G4288' => 'pso', 'QL03p027355' => 'qlo', 'QL03p027430' => 'qlo', 'QL04p081380' => 'qlo', 'QL06p015642' => 'qlo', 'QL06p015650' => 'qlo', 'QL06p015686' => 'qlo', 'QL12p042927' => 'qlo', 'QL93p1863_0035' => 'qlo', 'RcHm_v2.0_Chr3g0450581' => 'rch', 'RcHm_v2.0_Chr4g0390371' => 'rch', 'RcHm_v2.0_Chr4g0390381' => 'rch', 'RcHm_v2.0_Chr4g0390491' => 'rch', 'RcHm_v2.0_Chr4g0390501' => 'rch', 'RcHm_v2.0_Chr6g0289231' => 'rch', 'Rhsim04G0190400' => 'rsi', 'Rhsim04G0190500' => 'rsi', 'Rhsim04G0190600' => 'rsi', 'Rhsim13G0031400' => 'rsi', 'Rhsim13G0165600' => 'rsi', 'RhsimUnG0114600' => 'rsi', 'RhsimUnG0114700' => 'rsi', 'Sabra02G0034800' => 'sbr', 'Sabra02G0035100' => 'sbr', 'Sabra05G0168600' => 'sbr', 'Sabra05G0168800' => 'sbr', 'Sabra08G0123700' => 'sbr', 'Sabra10G0031900' => 'sbr', 'Sabra13G0039000' => 'sbr', 'SalBow2G0782' => 'sbo', 'SalBow2G1403' => 'sbo', 'SalBow4G0074' => 'sbo', 'SalBow4G2635' => 'sbo', 'SalBow5G3010' => 'sbo', 'Sc05g0000870' => 'sci', 'Sc05g0000890' => 'sci', 'Sc13g0005000' => 'sci', 'Sc13g0005030' => 'sci', 'Sc19g0003790' => 'sci', 'Sc19g0003800' => 'sci', 'Sed0003467' => 'sed', 'Sed0009355' => 'sed', 'Sed0009894' => 'sed', 'Sed0011972' => 'sed', 'Sed0021483' => 'sed', 'Sed0021750' => 'sed', 'Sed0026279' => 'sed', 'SEGI_05312' => 'sgi', 'SEGI_10112' => 'sgi', 'SEGI_15835' => 'sgi', 'SEGI_30386' => 'sgi', 'SEGI_34122' => 'sgi', 'SEGI_35063' => 'sgi', 'SGA_v2.0_scaffold101G29794' => 'sas', 'SGA_v2.0_scaffold1G00573' => 'sas', 'SGA_v2.0_scaffold79G25637' => 'sas', 'SGA_v2.0_scaffold88G27283' => 'sas', 'SGA_v2.0_scaffold88G27285' => 'sas', 'SGA_v2.0_scaffold88G27331' => 'sas', 'SHI09937' => 'shi', 'SMO119G0302' => 'smo', 'SMO137G0231' => 'smo', 'SMO367G1151' => 'smo', 'Solyc02g082000.3' => 'sly', 'Solyc06g031670.3' => 'sly', 'Solyc06g053810.3' => 'sly', 'Solyc07g025457.1' => 'sly', 'Solyc08g059740.1' => 'sly', 'Solyc08g059750.3' => 'sly', 'Solyc09g083370.3' => 'sly', 'Solyc12g038950.3' => 'sly', 'Sopen02g026630' => 'spe', 'Sopen06g018930' => 'spe', 'Sopen06g018940' => 'spe', 'Sopen08g009460' => 'spe', 'Sopen09g032290' => 'spe', 'Sp1g03080' => 'spa', 'Sp1g03090' => 'spa', 'Sp1g05480' => 'spa', 'Sp2g07860' => 'spa', 'Sp2g08430' => 'spa', 'Sp2g08440' => 'spa', 'Sp2g26200' => 'spa', 'Sp4g13170' => 'spa', 'Sp6g33840' => 'spa', 'SpUn1204_0010' => 'spa', 'TAR365G0908' => 'tar', 'TAR381G1270' => 'tar', 'TAR381G1651' => 'tar', 'TAR625G1131' => 'tar', 'TAR633G0962' => 'tar', 'TAR633G1729' => 'tar', 'TAR633G1864' => 'tar', 'TAR636G0221' => 'tar', 'TAR636G0314' => 'tar', 'TAR636G3202' => 'tar', 'THA.LOC104800805' => 'tha', 'THA.LOC104801096' => 'tha', 'THA.LOC104801555' => 'tha', 'THA.LOC104808491' => 'tha', 'THA.LOC104808595' => 'tha', 'THA.LOC104815985' => 'tha', 'THA.LOC104822250' => 'tha', 'THA.LOC104826071' => 'tha', 'Thecc.01G265200' => 'tca', 'Thecc.01G265300' => 'tca', 'Thecc.01G265700' => 'tca', 'Thecc.03G109100' => 'tca', 'Thecc.04G245900' => 'tca', 'Thecc.04G246000' => 'tca', 'Thhalv10003334m.g' => 'esa', 'Thhalv10005508m.g' => 'esa', 'Thhalv10005643m.g' => 'esa', 'Thhalv10007316m.g' => 'esa', 'Thhalv10009006m.g' => 'esa', 'Thhalv10009309m.g' => 'esa', 'Thhalv10014917m.g' => 'esa', 'Thhalv10014919m.g' => 'esa', 'Thhalv10015393m.g' => 'esa', 'Thhalv10016515m.g' => 'esa', 'Thhalv10029242m.g' => 'esa', 'TPR.G16654' => 'tpr', 'TPR.G20589' => 'tpr', 'TPR.G23029' => 'tpr', 'TPR.G27731' => 'tpr', 'TPR.G28889' => 'tpr', 'TPR.G28899' => 'tpr', 'TPR.G30846' => 'tpr', 'TPR.G5452' => 'tpr', 'TPR.G5713' => 'tpr', 'TPR.G9046' => 'tpr', 'TPR.G9061' => 'tpr', 'TWI09G1075' => 'twi', 'TWI12G0806' => 'twi', 'TWI18G0108' => 'twi', 'TWI53G1361' => 'twi', 'TWI73G0185' => 'twi', 'TWI73G0427' => 'twi', 'unitig_37.g12001' => 'ugi', 'unitig_747.g21660' => 'ugi', 'unitig_748.g7232' => 'ugi', 'unitig_748.g7315' => 'ugi', 'unitig_85.g27262' => 'ugi', 'unitig_92.g28220' => 'ugi', 'vmacro02632' => 'vma', 'vmacro08410' => 'vma', 'vmacro08411' => 'vma', 'vmacro15407' => 'vma', 'VMungo0251G3619' => 'vmu', 'VMungo0720G1204' => 'vmu', 'VMungo0720G1918' => 'vmu', 'VMungo0720G2387' => 'vmu', 'VMungo0720G2961' => 'vmu', 'VMungo1215G2154' => 'vmu', 'VMungo1383G2411' => 'vmu', 'Zm00001eb051130' => 'zma', 'Zm00001eb116830' => 'zma', 'Zm00001eb116850' => 'zma', 'Zm00001eb151740' => 'zma', 'Zm00001eb292360' => 'zma', 'Zm00001eb301640' => 'zma' ) $gf_id = 'HOM05D000856' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000856' ) $data_identifier = 'HOM05D000856' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 13, 'ath' => (int) 10, 'atr' => (int) 1, 'acertr' => (int) 8, 'cqu' => (int) 6, 'bca' => (int) 21, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 11, 'car' => (int) 9, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 8, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 5, 'fan' => (int) 16, 'fve' => (int) 6, 'gma' => (int) 11, 'ghi' => (int) 19, 'gra' => (int) 9, 'vvi' => (int) 7, 'han' => (int) 17, 'cav' => (int) 5, 'hma' => (int) 2, 'vpl' => (int) 2, 'sun' => (int) 7, 'lal' => (int) 9, 'lja' => (int) 5, 'lonja' => (int) 9, 'lsa' => (int) 5, 'mes' => (int) 8, 'mpo' => (int) 3, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 10, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 15, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 9, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 9, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 6, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 5, 'spa' => (int) 10, 'tar' => (int) 10, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 11, 'tpr' => (int) 11, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 4, 'vmu' => (int) 7, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb301640' $species_info = array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ) $local_species = 'bvu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000856', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p00010' => 'bna', 'A03p04160' => 'bna', 'A03p17160' => 'bna', 'A04p23370' => 'bna', 'A05p14860' => 'bna', 'A08p37020' => 'bna', 'A09p08050' => 'bna', 'A09p66800' => 'bna', 'A09p67940' => 'bna', 'A10p02680' => 'bna', 'A10p05320' => 'bna', 'Aa31LG1G20560' => 'aar', 'Aa31LG1G20610' => 'aar', 'Aa31LG1G7810' => 'aar', 'Aa31LG5G3590' => 'aar', 'Aa31LG5G6140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3819' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4683' => 'aag', 'Actinidia04480' => 'ach', 'Actinidia05466' => 'ach', 'Actinidia08445' => 'ach', 'Actinidia21170' => 'ach', 'Actinidia24812' => 'ach', 'Actinidia24951' => 'ach', 'Actinidia40088' => 'ach', 'Ah.02g111660' => 'amhyb', 'Ah.11g048900' => 'amhyb', 'Ah.11g049910' => 'amhyb', 'AL1G13870' => 'aly', 'AL1G13880' => 'aly', 'AL1G16760' => 'aly', 'AL390U10020' => 'aly', 'AL4G25520' => 'aly', 'AL6G19890' => 'aly', 'AL6G19900' => 'aly', 'AL6G19910' => 'aly', 'AL8G40100' => 'aly', 'Aqoxy2G03562' => 'aox', 'Aqoxy5G00316' => 'aox', 'Aqoxy5G00926' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1628KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1H403S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2FU6SJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.882I6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8YRY2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YN1SN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AF70II' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZA8L1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F916KL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHRD8H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KTZ8QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S22EMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8M29T' => 'arhy', 'AT1G04270' => 'ath', 'AT1G04280' => 'ath', 'AT1G06750' => 'ath', 'AT1G33850' => 'ath', 'AT2G30630' => 'ath', 'AT5G09490' => 'ath', 'AT5G09500' => 'ath', 'AT5G09510' => 'ath', 'AT5G43640' => 'ath', 'AT5G63070' => 'ath', 'ATR0605G315' => 'atr', 'Atru.chr11.175' => 'acertr', 'Atru.chr11.653' => 'acertr', 'Atru.chr3.1616' => 'acertr', 'Atru.chr4.2230' => 'acertr', 'Atru.chr4.2232' => 'acertr', 'Atru.chr5.1598' => 'acertr', 'Atru.chr5.1600' => 'acertr', 'Atru.chr5.2188' => 'acertr', 'AUR62008326' => 'cqu', 'AUR62011922' => 'cqu', 'AUR62011924' => 'cqu', 'AUR62021771' => 'cqu', 'AUR62032237' => 'cqu', 'AUR62032240' => 'cqu', 'BcaB01g05572' => 'bca', 'BcaB02g10337' => 'bca', 'BcaB04g19944' => 'bca', 'BcaB05g21548' => 'bca', 'BcaB05g21549' => 'bca', 'BcaB05g23227' => 'bca', 'BcaB06g26256' => 'bca', 'BcaB06g26257' => 'bca', 'BcaB06g28379' => 'bca', 'BcaC02g11159' => 'bca', 'BcaC03g13258' => 'bca', 'BcaC03g13259' => 'bca', 'BcaC05g24456' => 'bca', 'BcaC05g24457' => 'bca', 'BcaC07g36922' => 'bca', 'BcaC07g36923' => 'bca', 'BcaC07g42050' => 'bca', 'BcaC07g42176' => 'bca', 'BcaC07g42195' => 'bca', 'BcaC07g42196' => 'bca', 'BcaNung06674' => 'bca', 'BolC2t06351H' => 'bol', 'BolC2t06352H' => 'bol', 'BolC3t12993H' => 'bol', 'BolC4t23525H' => 'bol', 'BolC4t27475H' => 'bol', 'BolC5t29025H' => 'bol', 'BolC5t29026H' => 'bol', 'BolC8t46898H' => 'bol', 'BolC8t46899H' => 'bol', 'BolC8t52630H' => 'bol', 'BolC8t52765H' => 'bol', 'BolC9t53824H' => 'bol', 'BraA03t09760Z' => 'bra', 'BraA03t10990Z' => 'bra', 'BraA05t20413Z' => 'bra', 'BraA08t35602Z' => 'bra', 'BraA09t36458Z' => 'bra', 'BraA09t42018Z' => 'bra', 'BraA09t42129Z' => 'bra', 'BraA10t42536Z' => 'bra', 'BraA10t42537Z' => 'bra', 'C01p10690' => 'bna', 'C02p03890' => 'bna', 'C02p03900' => 'bna', 'C03p04620' => 'bna', 'C04p19870' => 'bna', 'C04p59670' => 'bna', 'C05p02460' => 'bna', 'C05p02470' => 'bna', 'C08p00980' => 'bna', 'C08p00990' => 'bna', 'C08p51030' => 'bna', 'C08p52360' => 'bna', 'C09p09120' => 'bna', 'CAN.G19.15' => 'can', 'CAN.G251.10' => 'can', 'CAN.G251.9' => 'can', 'CAN.G398.24' => 'can', 'CAN.G410.32' => 'can', 'CAN.G881.2' => 'can', 'CANSAT01G3025' => 'cansat', 'CANSAT78G1211' => 'cansat', 'CANSAT78G1218' => 'cansat', 'CANSAT78G1521' => 'cansat', 'CANSAT78G1670' => 'cansat', 'CARHR003600' => 'chi', 'CARHR003610' => 'chi', 'CARHR006290' => 'chi', 'CARHR006430' => 'chi', 'CARHR124110' => 'chi', 'CARHR203870' => 'chi', 'CARHR203880' => 'chi', 'CARHR203890' => 'chi', 'CARHR276880' => 'chi', 'Carub.0001s0346' => 'cru', 'Carub.0001s0347' => 'cru', 'Carub.0001s0607' => 'cru', 'Carub.0003s2768' => 'cru', 'Carub.0003s2769' => 'cru', 'Carub.0004s1178' => 'cru', 'Carub.0006s0806' => 'cru', 'Carub.0006s0807' => 'cru', 'Carub.0006s0808' => 'cru', 'Carub.0008s0501' => 'cru', 'Carub.0008s2379' => 'cru', 'Ca_08655_v3' => 'car', 'Ca_08922_v3' => 'car', 'Ca_08923_v3' => 'car', 'Ca_09119_v3' => 'car', 'Ca_09703_v3' => 'car', 'Ca_09705_v3' => 'car', 'Ca_09835_v3' => 'car', 'Ca_26403_v3' => 'car', 'Ca_30719_v3' => 'car', 'CBR_g17958' => 'cbr', 'CBR_g40516' => 'cbr', 'Cc00_g05350' => 'ccan', 'Cc01_g18690' => 'ccan', 'Cc03_g04830' => 'ccan', 'Cc03_g04850' => 'ccan', 'CDE02G4469' => 'cde', 'CDE06G0883' => 'cde', 'CDE06G1295' => 'cde', 'CDE06G1390' => 'cde', 'CDE07G0584' => 'cde', 'CDE07G1084' => 'cde', 'CDE08G1259' => 'cde', 'Cfa002341' => 'cfa', 'Cfa024337' => 'cfa', 'Ciclev10004749m.g' => 'ccl', 'Ciclev10006127m.g' => 'ccl', 'Ciclev10019720m.g' => 'ccl', 'Ciclev10022652m.g' => 'ccl', 'CiPaw.01G190400' => 'cil', 'CiPaw.01G190500' => 'cil', 'CiPaw.02G116400' => 'cil', 'CiPaw.02G116500' => 'cil', 'CiPaw.04G183000' => 'cil', 'CiPaw.04G183300' => 'cil', 'ClCG05G004610' => 'cla', 'ClCG05G004620' => 'cla', 'ClCG06G006730' => 'cla', 'ClCG06G006740' => 'cla', 'ClCG11G003690' => 'cla', 'COL.COLO4_08276' => 'col', 'COL.COLO4_08277' => 'col', 'COL.COLO4_15787' => 'col', 'COL.COLO4_15789' => 'col', 'Cpa.g.c44815' => 'cpa', 'Cpa.g.sc52.144' => 'cpa', 'Cpa.g.sc58.46' => 'cpa', 'Cpa.g.sc58.47' => 'cpa', 'Cre08.g360900' => 'cre', 'CsaV3_2G013030' => 'csa', 'CsaV3_2G013050' => 'csa', 'CsaV3_2G015620' => 'csa', 'CsaV3_3G012590' => 'csa', 'CsaV3_3G012600' => 'csa', 'CSS0001641' => 'camsi', 'CSS0008310' => 'camsi', 'CSS0013011' => 'camsi', 'CSS0017147' => 'camsi', 'CSS0022970' => 'camsi', 'CSS0025655' => 'camsi', 'CSS0028665' => 'camsi', 'CSS0029117' => 'camsi', 'CSS0032024' => 'camsi', 'CSS0039681' => 'camsi', 'CSS0046516' => 'camsi', 'CSS0050307' => 'camsi', 'DCAR_005871' => 'dca', 'DCAR_007342' => 'dca', 'DCAR_024228' => 'dca', 'DCAR_027277' => 'dca', 'DCAR_030718' => 'dca', 'Dinv20287' => 'din', 'Dinv22461' => 'din', 'Dinv22464' => 'din', 'Dinv29912' => 'din', 'Dinv29913' => 'din', 'Dinv34580' => 'din', 'Dinv34582' => 'din', 'Dinv44632' => 'din', 'Duzib052G0266' => 'dzi', 'Duzib133G0907' => 'dzi', 'Duzib133G1034' => 'dzi', 'Duzib138G0207' => 'dzi', 'Duzib138G0491' => 'dzi', 'Duzib151G0812' => 'dzi', 'Duzib151G1166' => 'dzi', 'Duzib168G0192' => 'dzi', 'Duzib211G0077' => 'dzi', 'Duzib212G0429' => 'dzi', 'Duzib212G0472' => 'dzi', 'ECA233G2617' => 'eca', 'ECA236G4188' => 'eca', 'ECA240G0936' => 'eca', 'ECA240G1129' => 'eca', 'ECA247G0623' => 'eca', 'EL10Ac5g10451' => 'bvu', 'EL10Ac5g10453' => 'bvu', 'EL10Ac5g10894' => 'bvu', 'Eucgr.H00192' => 'egr', 'Eucgr.H00193' => 'egr', 'Eucgr.H00194' => 'egr', 'Eucgr.J01562' => 'egr', 'Eucgr.K03301' => 'egr', 'FAN02G0632' => 'fan', 'FAN05G5378' => 'fan', 'FAN09G3247' => 'fan', 'FAN12G0435' => 'fan', 'FAN12G2426' => 'fan', 'FAN14G1707' => 'fan', 'FAN14G4725' => 'fan', 'FAN15G2071' => 'fan', 'FAN17G3065' => 'fan', 'FAN19G1376' => 'fan', 'FAN20G0354' => 'fan', 'FAN20G2429' => 'fan', 'FAN20G2658' => 'fan', 'FAN24G2343' => 'fan', 'FAN27G2362' => 'fan', 'FAN28G1765' => 'fan', 'FvH4_1g16020' => 'fve', 'FvH4_2g04890' => 'fve', 'FvH4_2g22270' => 'fve', 'FvH4_4g02630' => 'fve', 'FvH4_4g02640' => 'fve', 'FvH4_6g02650' => 'fve', 'Glyma.02G140600' => 'gma', 'Glyma.03G159900' => 'gma', 'Glyma.05G234800' => 'gma', 'Glyma.07G269600' => 'gma', 'Glyma.08G042300' => 'gma', 'Glyma.10G033500' => 'gma', 'Glyma.10G185200' => 'gma', 'Glyma.17G004300' => 'gma', 'Glyma.19G161900' => 'gma', 'Glyma.20G205100' => 'gma', 'Glyma.20G205200' => 'gma', 'Gohir.A01G139101' => 'ghi', 'Gohir.A02G035600' => 'ghi', 'Gohir.A02G117901' => 'ghi', 'Gohir.A07G210100' => 'ghi', 'Gohir.A07G210200' => 'ghi', 'Gohir.A08G061100' => 'ghi', 'Gohir.A09G223000' => 'ghi', 'Gohir.A09G223100' => 'ghi', 'Gohir.A10G113900' => 'ghi', 'Gohir.A10G114000' => 'ghi', 'Gohir.D02G042300' => 'ghi', 'Gohir.D07G216100' => 'ghi', 'Gohir.D07G216200' => 'ghi', 'Gohir.D08G070400' => 'ghi', 'Gohir.D09G225000' => 'ghi', 'Gohir.D09G225100' => 'ghi', 'Gohir.D10G152300' => 'ghi', 'Gohir.D10G153200' => 'ghi', 'Gohir.D11G133701' => 'ghi', 'Gorai.004G074100' => 'gra', 'Gorai.005G046800' => 'gra', 'Gorai.006G246500' => 'gra', 'Gorai.006G246600' => 'gra', 'Gorai.007G142900' => 'gra', 'Gorai.011G171000' => 'gra', 'Gorai.011G171100' => 'gra', 'Gorai.013G104300' => 'gra', 'Gorai.013G104400' => 'gra', 'GSVIVG01000754001' => 'vvi', 'GSVIVG01000756001' => 'vvi', 'GSVIVG01010903001' => 'vvi', 'GSVIVG01017623001' => 'vvi', 'GSVIVG01018113001' => 'vvi', 'GSVIVG01018116001' => 'vvi', 'GSVIVG01018118001' => 'vvi', 'HanXRQChr03g0076211' => 'han', 'HanXRQChr03g0092431' => 'han', 'HanXRQChr03g0092441' => 'han', 'HanXRQChr03g0092591' => 'han', 'HanXRQChr03g0092671' => 'han', 'HanXRQChr03g0092681' => 'han', 'HanXRQChr03g0092691' => 'han', 'HanXRQChr03g0092701' => 'han', 'HanXRQChr03g0092721' => 'han', 'HanXRQChr03g0092731' => 'han', 'HanXRQChr04g0113681' => 'han', 'HanXRQChr10g0281371' => 'han', 'HanXRQChr11g0337141' => 'han', 'HanXRQChr13g0424521' => 'han', 'HanXRQChr13g0424531' => 'han', 'HanXRQChr13g0424541' => 'han', 'HanXRQChr16g0498221' => 'han', 'Haze_04377' => 'cav', 'Haze_11298' => 'cav', 'Haze_24547' => 'cav', 'Haze_24550' => 'cav', 'Haze_26587' => 'cav', 'Hma1.2p1_0650F.1_g195410' => 'hma', 'Hma1.2p1_0893F.1_g233470' => 'hma', 'HPP92_006508' => 'vpl', 'HPP92_024780' => 'vpl', 'Hund02688' => 'sun', 'Hund09380' => 'sun', 'Hund09381' => 'sun', 'Hund09832' => 'sun', 'Hund09833' => 'sun', 'Hund11351' => 'sun', 'Hund11513' => 'sun', 'Lalb_Chr06g0162591' => 'lal', 'Lalb_Chr06g0162601' => 'lal', 'Lalb_Chr06g0169321' => 'lal', 'Lalb_Chr09g0330951' => 'lal', 'Lalb_Chr16g0387631' => 'lal', 'Lalb_Chr21g0306241' => 'lal', 'Lalb_Chr25g0290051' => 'lal', 'Lalb_Chr25g0290061' => 'lal', 'Lalb_Chr25g0290071' => 'lal', 'Lj1g0003876' => 'lja', 'Lj1P1207T36' => 'lonja', 'Lj2C1156G12' => 'lonja', 'Lj3A793G39' => 'lonja', 'Lj3C580G2' => 'lonja', 'Lj3C780G2' => 'lonja', 'Lj3C780T4' => 'lonja', 'Lj3C793G9' => 'lonja', 'Lj4g0012960' => 'lja', 'Lj5g0021252' => 'lja', 'Lj5g0021484' => 'lja', 'Lj5g0024528' => 'lja', 'Lj6A399T12' => 'lonja', 'Lj6A656G65' => 'lonja', 'Lsat_1_v5_gn_3_125500' => 'lsa', 'Lsat_1_v5_gn_3_125540' => 'lsa', 'Lsat_1_v5_gn_5_72701' => 'lsa', 'Lsat_1_v5_gn_8_91560' => 'lsa', 'Lsat_1_v5_gn_9_9640' => 'lsa', 'Manes.01G200600' => 'mes', 'Manes.01G200700' => 'mes', 'Manes.03G168900' => 'mes', 'Manes.03G169000' => 'mes', 'Manes.05G085801' => 'mes', 'Manes.05G086200' => 'mes', 'Manes.15G036700' => 'mes', 'Manes.15G036900' => 'mes', 'Mapoly0004s0172' => 'mpo', 'Mapoly0023s0001' => 'mpo', 'Mapoly0142s0012' => 'mpo', 'MBI01_g32854_MAGBIO' => 'mbi', 'MBI11_g24427_MAGBIO' => 'mbi', 'MBI11_g47319_MAGBIO' => 'mbi', 'MCO01G433' => 'mco', 'MD00G1187800' => 'mdo', 'MD04G1226500' => 'mdo', 'MD05G1203900' => 'mdo', 'MD10G1191100' => 'mdo', 'MD12G1243500' => 'mdo', 'MD13G1207000' => 'mdo', 'MD13G1207100' => 'mdo', 'MD16G1208600' => 'mdo', 'Medtr1g050352' => 'mtr', 'Medtr1g070385' => 'mtr', 'Medtr1g070450' => 'mtr', 'Medtr1g075200' => 'mtr', 'Medtr1g075250' => 'mtr', 'Medtr1g075260' => 'mtr', 'Medtr1g475250' => 'mtr', 'Medtr4g075450' => 'mtr', 'Medtr7g096300' => 'mtr', 'Medtr8g105110' => 'mtr', 'MELO3C006470.2' => 'cme', 'MELO3C006471.2' => 'cme', 'MELO3C020772.2' => 'cme', 'MELO3C026780.2' => 'cme', 'MELO3C026781.2' => 'cme', 'Migut.D00390' => 'egut', 'Migut.G00435' => 'egut', 'Migut.G00436' => 'egut', 'Migut.G00718' => 'egut', 'MSTRG.21891' => 'ama', 'MSTRG.26910' => 'ama', 'MSTRG.4099' => 'ama', 'MSTRG.9925' => 'ama', 'Nitab4.5_0000165g0010' => 'nta', 'Nitab4.5_0000209g0180' => 'nta', 'Nitab4.5_0000244g0440' => 'nta', 'Nitab4.5_0000525g0220' => 'nta', 'Nitab4.5_0001597g0020' => 'nta', 'Nitab4.5_0001878g0040' => 'nta', 'Nitab4.5_0001878g0060' => 'nta', 'Nitab4.5_0002838g0100' => 'nta', 'Nitab4.5_0002838g0120' => 'nta', 'Nitab4.5_0004798g0030' => 'nta', 'Nitab4.5_0005420g0010' => 'nta', 'Nitab4.5_0005507g0010' => 'nta', 'Nitab4.5_0005574g0020' => 'nta', 'Nitab4.5_0005838g0010' => 'nta', 'Nitab4.5_0010580g0020' => 'nta', 'Nn1g02599' => 'nnu', 'Nn1g02608' => 'nnu', 'Nn3g17742' => 'nnu', 'Nn3g19534' => 'nnu', 'Nn3g19535' => 'nnu', 'Oeu008790.1' => 'oeu', 'Oeu008792.1' => 'oeu', 'Oeu032590.1' => 'oeu', 'Oeu035349.1' => 'oeu', 'Oeu049791.1' => 'oeu', 'Os01g0774500' => 'osa', 'Os03g0628800' => 'osa', 'Os03g0798600' => 'osa', 'Os05g0508800' => 'osa', 'Peaxi162Scf00036g02018' => 'pax', 'Peaxi162Scf00578g00032' => 'pax', 'Peaxi162Scf00578g00317' => 'pax', 'Peaxi162Scf00785g00114' => 'pax', 'Peaxi162Scf00813g00119' => 'pax', 'Peaxi162Scf00906g00227' => 'pax', 'PGR004G0875' => 'pgr', 'PGR004G2424' => 'pgr', 'PGR031G1239' => 'pgr', 'PGR031G2474' => 'pgr', 'PGR044G0423' => 'pgr', 'PGSC0003DMG400001128' => 'stu', 'PGSC0003DMG400007336' => 'stu', 'PGSC0003DMG400016318' => 'stu', 'PGSC0003DMG400016319' => 'stu', 'PGSC0003DMG400018074' => 'stu', 'Phvul.001G157700' => 'pvu', 'Phvul.002G148550' => 'pvu', 'Phvul.002G320200' => 'pvu', 'Phvul.003G089200' => 'pvu', 'Phvul.007G126000' => 'pvu', 'Phvul.007G126100' => 'pvu', 'Phvul.007G178000' => 'pvu', 'Phvul.007G178200' => 'pvu', 'Potri.002G043000' => 'ptr', 'Potri.002G043200' => 'ptr', 'Potri.003G123750' => 'ptr', 'Potri.005G055401' => 'ptr', 'Potri.005G219700' => 'ptr', 'Potri.005G220000' => 'ptr', 'Potri.008G161901' => 'ptr', 'Potri.008G162000' => 'ptr', 'Potri.008G162400' => 'ptr', 'Potri.010G076900' => 'ptr', 'Pp3c12_9180' => 'ppa', 'Pp3c13_19770' => 'ppa', 'Pp3c14_22950' => 'ppa', 'Pp3c16_12160' => 'ppa', 'Pp3c27_7820' => 'ppa', 'Pp3c2_3490' => 'ppa', 'Pp3c3_23700' => 'ppa', 'Pp3c3_36520' => 'ppa', 'Pp3c4_15250' => 'ppa', 'PRCOL_00007002' => 'pco', 'Prupe.1G030600' => 'ppe', 'Prupe.1G030700' => 'ppe', 'Prupe.6G345200' => 'ppe', 'Prupe.8G230300' => 'ppe', 'Prupe.8G230500' => 'ppe', 'Psat3g059600' => 'psa', 'Psat5g200920' => 'psa', 'Psat6g056440' => 'psa', 'Psat6g057360' => 'psa', 'Psat6g134120' => 'psa', 'Psat6g134160' => 'psa', 'Psat7g008640' => 'psa', 'Psat7g185240' => 'psa', 'PSO017G1330' => 'pso', 'PSO063G6097' => 'pso', 'PSO170G0835' => 'pso', 'PSO170G2499' => 'pso', 'PSO210G5058' => 'pso', 'PSO210G6154' => 'pso', 'PSO585G0031' => 'pso', 'PSO832G0264' => 'pso', 'PSO832G4288' => 'pso', 'QL03p027355' => 'qlo', 'QL03p027430' => 'qlo', 'QL04p081380' => 'qlo', 'QL06p015642' => 'qlo', 'QL06p015650' => 'qlo', 'QL06p015686' => 'qlo', 'QL12p042927' => 'qlo', 'QL93p1863_0035' => 'qlo', 'RcHm_v2.0_Chr3g0450581' => 'rch', 'RcHm_v2.0_Chr4g0390371' => 'rch', 'RcHm_v2.0_Chr4g0390381' => 'rch', 'RcHm_v2.0_Chr4g0390491' => 'rch', 'RcHm_v2.0_Chr4g0390501' => 'rch', 'RcHm_v2.0_Chr6g0289231' => 'rch', 'Rhsim04G0190400' => 'rsi', 'Rhsim04G0190500' => 'rsi', 'Rhsim04G0190600' => 'rsi', 'Rhsim13G0031400' => 'rsi', 'Rhsim13G0165600' => 'rsi', 'RhsimUnG0114600' => 'rsi', 'RhsimUnG0114700' => 'rsi', 'Sabra02G0034800' => 'sbr', 'Sabra02G0035100' => 'sbr', 'Sabra05G0168600' => 'sbr', 'Sabra05G0168800' => 'sbr', 'Sabra08G0123700' => 'sbr', 'Sabra10G0031900' => 'sbr', 'Sabra13G0039000' => 'sbr', 'SalBow2G0782' => 'sbo', 'SalBow2G1403' => 'sbo', 'SalBow4G0074' => 'sbo', 'SalBow4G2635' => 'sbo', 'SalBow5G3010' => 'sbo', 'Sc05g0000870' => 'sci', 'Sc05g0000890' => 'sci', 'Sc13g0005000' => 'sci', 'Sc13g0005030' => 'sci', 'Sc19g0003790' => 'sci', 'Sc19g0003800' => 'sci', 'Sed0003467' => 'sed', 'Sed0009355' => 'sed', 'Sed0009894' => 'sed', 'Sed0011972' => 'sed', 'Sed0021483' => 'sed', 'Sed0021750' => 'sed', 'Sed0026279' => 'sed', 'SEGI_05312' => 'sgi', 'SEGI_10112' => 'sgi', 'SEGI_15835' => 'sgi', 'SEGI_30386' => 'sgi', 'SEGI_34122' => 'sgi', 'SEGI_35063' => 'sgi', 'SGA_v2.0_scaffold101G29794' => 'sas', 'SGA_v2.0_scaffold1G00573' => 'sas', 'SGA_v2.0_scaffold79G25637' => 'sas', 'SGA_v2.0_scaffold88G27283' => 'sas', 'SGA_v2.0_scaffold88G27285' => 'sas', 'SGA_v2.0_scaffold88G27331' => 'sas', 'SHI09937' => 'shi', 'SMO119G0302' => 'smo', 'SMO137G0231' => 'smo', 'SMO367G1151' => 'smo', 'Solyc02g082000.3' => 'sly', 'Solyc06g031670.3' => 'sly', 'Solyc06g053810.3' => 'sly', 'Solyc07g025457.1' => 'sly', 'Solyc08g059740.1' => 'sly', 'Solyc08g059750.3' => 'sly', 'Solyc09g083370.3' => 'sly', 'Solyc12g038950.3' => 'sly', 'Sopen02g026630' => 'spe', 'Sopen06g018930' => 'spe', 'Sopen06g018940' => 'spe', 'Sopen08g009460' => 'spe', 'Sopen09g032290' => 'spe', 'Sp1g03080' => 'spa', 'Sp1g03090' => 'spa', 'Sp1g05480' => 'spa', 'Sp2g07860' => 'spa', 'Sp2g08430' => 'spa', 'Sp2g08440' => 'spa', 'Sp2g26200' => 'spa', 'Sp4g13170' => 'spa', 'Sp6g33840' => 'spa', 'SpUn1204_0010' => 'spa', 'TAR365G0908' => 'tar', 'TAR381G1270' => 'tar', 'TAR381G1651' => 'tar', 'TAR625G1131' => 'tar', 'TAR633G0962' => 'tar', 'TAR633G1729' => 'tar', 'TAR633G1864' => 'tar', 'TAR636G0221' => 'tar', 'TAR636G0314' => 'tar', 'TAR636G3202' => 'tar', 'THA.LOC104800805' => 'tha', 'THA.LOC104801096' => 'tha', 'THA.LOC104801555' => 'tha', 'THA.LOC104808491' => 'tha', 'THA.LOC104808595' => 'tha', 'THA.LOC104815985' => 'tha', 'THA.LOC104822250' => 'tha', 'THA.LOC104826071' => 'tha', 'Thecc.01G265200' => 'tca', 'Thecc.01G265300' => 'tca', 'Thecc.01G265700' => 'tca', 'Thecc.03G109100' => 'tca', 'Thecc.04G245900' => 'tca', 'Thecc.04G246000' => 'tca', 'Thhalv10003334m.g' => 'esa', 'Thhalv10005508m.g' => 'esa', 'Thhalv10005643m.g' => 'esa', 'Thhalv10007316m.g' => 'esa', 'Thhalv10009006m.g' => 'esa', 'Thhalv10009309m.g' => 'esa', 'Thhalv10014917m.g' => 'esa', 'Thhalv10014919m.g' => 'esa', 'Thhalv10015393m.g' => 'esa', 'Thhalv10016515m.g' => 'esa', 'Thhalv10029242m.g' => 'esa', 'TPR.G16654' => 'tpr', 'TPR.G20589' => 'tpr', 'TPR.G23029' => 'tpr', 'TPR.G27731' => 'tpr', 'TPR.G28889' => 'tpr', 'TPR.G28899' => 'tpr', 'TPR.G30846' => 'tpr', 'TPR.G5452' => 'tpr', 'TPR.G5713' => 'tpr', 'TPR.G9046' => 'tpr', 'TPR.G9061' => 'tpr', 'TWI09G1075' => 'twi', 'TWI12G0806' => 'twi', 'TWI18G0108' => 'twi', 'TWI53G1361' => 'twi', 'TWI73G0185' => 'twi', 'TWI73G0427' => 'twi', 'unitig_37.g12001' => 'ugi', 'unitig_747.g21660' => 'ugi', 'unitig_748.g7232' => 'ugi', 'unitig_748.g7315' => 'ugi', 'unitig_85.g27262' => 'ugi', 'unitig_92.g28220' => 'ugi', 'vmacro02632' => 'vma', 'vmacro08410' => 'vma', 'vmacro08411' => 'vma', 'vmacro15407' => 'vma', 'VMungo0251G3619' => 'vmu', 'VMungo0720G1204' => 'vmu', 'VMungo0720G1918' => 'vmu', 'VMungo0720G2387' => 'vmu', 'VMungo0720G2961' => 'vmu', 'VMungo1215G2154' => 'vmu', 'VMungo1383G2411' => 'vmu', 'Zm00001eb051130' => 'zma', 'Zm00001eb116830' => 'zma', 'Zm00001eb116850' => 'zma', 'Zm00001eb151740' => 'zma', 'Zm00001eb292360' => 'zma', 'Zm00001eb301640' => 'zma' ), 'gf_id' => 'HOM05D000856', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000856' ), 'data_identifier' => 'HOM05D000856', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000856', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p00010' => 'bna', 'A03p04160' => 'bna', 'A03p17160' => 'bna', 'A04p23370' => 'bna', 'A05p14860' => 'bna', 'A08p37020' => 'bna', 'A09p08050' => 'bna', 'A09p66800' => 'bna', 'A09p67940' => 'bna', 'A10p02680' => 'bna', 'A10p05320' => 'bna', 'Aa31LG1G20560' => 'aar', 'Aa31LG1G20610' => 'aar', 'Aa31LG1G7810' => 'aar', 'Aa31LG5G3590' => 'aar', 'Aa31LG5G6140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3819' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4683' => 'aag', 'Actinidia04480' => 'ach', 'Actinidia05466' => 'ach', 'Actinidia08445' => 'ach', 'Actinidia21170' => 'ach', 'Actinidia24812' => 'ach', 'Actinidia24951' => 'ach', 'Actinidia40088' => 'ach', 'Ah.02g111660' => 'amhyb', 'Ah.11g048900' => 'amhyb', 'Ah.11g049910' => 'amhyb', 'AL1G13870' => 'aly', 'AL1G13880' => 'aly', 'AL1G16760' => 'aly', 'AL390U10020' => 'aly', 'AL4G25520' => 'aly', 'AL6G19890' => 'aly', 'AL6G19900' => 'aly', 'AL6G19910' => 'aly', 'AL8G40100' => 'aly', 'Aqoxy2G03562' => 'aox', 'Aqoxy5G00316' => 'aox', 'Aqoxy5G00926' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1628KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1H403S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2FU6SJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.882I6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8YRY2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YN1SN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AF70II' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZA8L1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F916KL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHRD8H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KTZ8QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S22EMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8M29T' => 'arhy', 'AT1G04270' => 'ath', 'AT1G04280' => 'ath', 'AT1G06750' => 'ath', 'AT1G33850' => 'ath', 'AT2G30630' => 'ath', 'AT5G09490' => 'ath', 'AT5G09500' => 'ath', 'AT5G09510' => 'ath', 'AT5G43640' => 'ath', 'AT5G63070' => 'ath', 'ATR0605G315' => 'atr', 'Atru.chr11.175' => 'acertr', 'Atru.chr11.653' => 'acertr', 'Atru.chr3.1616' => 'acertr', 'Atru.chr4.2230' => 'acertr', 'Atru.chr4.2232' => 'acertr', 'Atru.chr5.1598' => 'acertr', 'Atru.chr5.1600' => 'acertr', 'Atru.chr5.2188' => 'acertr', 'AUR62008326' => 'cqu', 'AUR62011922' => 'cqu', 'AUR62011924' => 'cqu', 'AUR62021771' => 'cqu', 'AUR62032237' => 'cqu', 'AUR62032240' => 'cqu', 'BcaB01g05572' => 'bca', 'BcaB02g10337' => 'bca', 'BcaB04g19944' => 'bca', 'BcaB05g21548' => 'bca', 'BcaB05g21549' => 'bca', 'BcaB05g23227' => 'bca', 'BcaB06g26256' => 'bca', 'BcaB06g26257' => 'bca', 'BcaB06g28379' => 'bca', 'BcaC02g11159' => 'bca', 'BcaC03g13258' => 'bca', 'BcaC03g13259' => 'bca', 'BcaC05g24456' => 'bca', 'BcaC05g24457' => 'bca', 'BcaC07g36922' => 'bca', 'BcaC07g36923' => 'bca', 'BcaC07g42050' => 'bca', 'BcaC07g42176' => 'bca', 'BcaC07g42195' => 'bca', 'BcaC07g42196' => 'bca', 'BcaNung06674' => 'bca', 'BolC2t06351H' => 'bol', 'BolC2t06352H' => 'bol', 'BolC3t12993H' => 'bol', 'BolC4t23525H' => 'bol', 'BolC4t27475H' => 'bol', 'BolC5t29025H' => 'bol', 'BolC5t29026H' => 'bol', 'BolC8t46898H' => 'bol', 'BolC8t46899H' => 'bol', 'BolC8t52630H' => 'bol', 'BolC8t52765H' => 'bol', 'BolC9t53824H' => 'bol', 'BraA03t09760Z' => 'bra', 'BraA03t10990Z' => 'bra', 'BraA05t20413Z' => 'bra', 'BraA08t35602Z' => 'bra', 'BraA09t36458Z' => 'bra', 'BraA09t42018Z' => 'bra', 'BraA09t42129Z' => 'bra', 'BraA10t42536Z' => 'bra', 'BraA10t42537Z' => 'bra', 'C01p10690' => 'bna', 'C02p03890' => 'bna', 'C02p03900' => 'bna', 'C03p04620' => 'bna', 'C04p19870' => 'bna', 'C04p59670' => 'bna', 'C05p02460' => 'bna', 'C05p02470' => 'bna', 'C08p00980' => 'bna', 'C08p00990' => 'bna', 'C08p51030' => 'bna', 'C08p52360' => 'bna', 'C09p09120' => 'bna', 'CAN.G19.15' => 'can', 'CAN.G251.10' => 'can', 'CAN.G251.9' => 'can', 'CAN.G398.24' => 'can', 'CAN.G410.32' => 'can', 'CAN.G881.2' => 'can', 'CANSAT01G3025' => 'cansat', 'CANSAT78G1211' => 'cansat', 'CANSAT78G1218' => 'cansat', 'CANSAT78G1521' => 'cansat', 'CANSAT78G1670' => 'cansat', 'CARHR003600' => 'chi', 'CARHR003610' => 'chi', 'CARHR006290' => 'chi', 'CARHR006430' => 'chi', 'CARHR124110' => 'chi', 'CARHR203870' => 'chi', 'CARHR203880' => 'chi', 'CARHR203890' => 'chi', 'CARHR276880' => 'chi', 'Carub.0001s0346' => 'cru', 'Carub.0001s0347' => 'cru', 'Carub.0001s0607' => 'cru', 'Carub.0003s2768' => 'cru', 'Carub.0003s2769' => 'cru', 'Carub.0004s1178' => 'cru', 'Carub.0006s0806' => 'cru', 'Carub.0006s0807' => 'cru', 'Carub.0006s0808' => 'cru', 'Carub.0008s0501' => 'cru', 'Carub.0008s2379' => 'cru', 'Ca_08655_v3' => 'car', 'Ca_08922_v3' => 'car', 'Ca_08923_v3' => 'car', 'Ca_09119_v3' => 'car', 'Ca_09703_v3' => 'car', 'Ca_09705_v3' => 'car', 'Ca_09835_v3' => 'car', 'Ca_26403_v3' => 'car', 'Ca_30719_v3' => 'car', 'CBR_g17958' => 'cbr', 'CBR_g40516' => 'cbr', 'Cc00_g05350' => 'ccan', 'Cc01_g18690' => 'ccan', 'Cc03_g04830' => 'ccan', 'Cc03_g04850' => 'ccan', 'CDE02G4469' => 'cde', 'CDE06G0883' => 'cde', 'CDE06G1295' => 'cde', 'CDE06G1390' => 'cde', 'CDE07G0584' => 'cde', 'CDE07G1084' => 'cde', 'CDE08G1259' => 'cde', 'Cfa002341' => 'cfa', 'Cfa024337' => 'cfa', 'Ciclev10004749m.g' => 'ccl', 'Ciclev10006127m.g' => 'ccl', 'Ciclev10019720m.g' => 'ccl', 'Ciclev10022652m.g' => 'ccl', 'CiPaw.01G190400' => 'cil', 'CiPaw.01G190500' => 'cil', 'CiPaw.02G116400' => 'cil', 'CiPaw.02G116500' => 'cil', 'CiPaw.04G183000' => 'cil', 'CiPaw.04G183300' => 'cil', 'ClCG05G004610' => 'cla', 'ClCG05G004620' => 'cla', 'ClCG06G006730' => 'cla', 'ClCG06G006740' => 'cla', 'ClCG11G003690' => 'cla', 'COL.COLO4_08276' => 'col', 'COL.COLO4_08277' => 'col', 'COL.COLO4_15787' => 'col', 'COL.COLO4_15789' => 'col', 'Cpa.g.c44815' => 'cpa', 'Cpa.g.sc52.144' => 'cpa', 'Cpa.g.sc58.46' => 'cpa', 'Cpa.g.sc58.47' => 'cpa', 'Cre08.g360900' => 'cre', 'CsaV3_2G013030' => 'csa', 'CsaV3_2G013050' => 'csa', 'CsaV3_2G015620' => 'csa', 'CsaV3_3G012590' => 'csa', 'CsaV3_3G012600' => 'csa', 'CSS0001641' => 'camsi', 'CSS0008310' => 'camsi', 'CSS0013011' => 'camsi', 'CSS0017147' => 'camsi', 'CSS0022970' => 'camsi', 'CSS0025655' => 'camsi', 'CSS0028665' => 'camsi', 'CSS0029117' => 'camsi', 'CSS0032024' => 'camsi', 'CSS0039681' => 'camsi', 'CSS0046516' => 'camsi', 'CSS0050307' => 'camsi', 'DCAR_005871' => 'dca', 'DCAR_007342' => 'dca', 'DCAR_024228' => 'dca', 'DCAR_027277' => 'dca', 'DCAR_030718' => 'dca', 'Dinv20287' => 'din', 'Dinv22461' => 'din', 'Dinv22464' => 'din', 'Dinv29912' => 'din', 'Dinv29913' => 'din', 'Dinv34580' => 'din', 'Dinv34582' => 'din', 'Dinv44632' => 'din', 'Duzib052G0266' => 'dzi', 'Duzib133G0907' => 'dzi', 'Duzib133G1034' => 'dzi', 'Duzib138G0207' => 'dzi', 'Duzib138G0491' => 'dzi', 'Duzib151G0812' => 'dzi', 'Duzib151G1166' => 'dzi', 'Duzib168G0192' => 'dzi', 'Duzib211G0077' => 'dzi', 'Duzib212G0429' => 'dzi', 'Duzib212G0472' => 'dzi', 'ECA233G2617' => 'eca', 'ECA236G4188' => 'eca', 'ECA240G0936' => 'eca', 'ECA240G1129' => 'eca', 'ECA247G0623' => 'eca', 'EL10Ac5g10451' => 'bvu', 'EL10Ac5g10453' => 'bvu', 'EL10Ac5g10894' => 'bvu', 'Eucgr.H00192' => 'egr', 'Eucgr.H00193' => 'egr', 'Eucgr.H00194' => 'egr', 'Eucgr.J01562' => 'egr', 'Eucgr.K03301' => 'egr', 'FAN02G0632' => 'fan', 'FAN05G5378' => 'fan', 'FAN09G3247' => 'fan', 'FAN12G0435' => 'fan', 'FAN12G2426' => 'fan', 'FAN14G1707' => 'fan', 'FAN14G4725' => 'fan', 'FAN15G2071' => 'fan', 'FAN17G3065' => 'fan', 'FAN19G1376' => 'fan', 'FAN20G0354' => 'fan', 'FAN20G2429' => 'fan', 'FAN20G2658' => 'fan', 'FAN24G2343' => 'fan', 'FAN27G2362' => 'fan', 'FAN28G1765' => 'fan', 'FvH4_1g16020' => 'fve', 'FvH4_2g04890' => 'fve', 'FvH4_2g22270' => 'fve', 'FvH4_4g02630' => 'fve', 'FvH4_4g02640' => 'fve', 'FvH4_6g02650' => 'fve', 'Glyma.02G140600' => 'gma', 'Glyma.03G159900' => 'gma', 'Glyma.05G234800' => 'gma', 'Glyma.07G269600' => 'gma', 'Glyma.08G042300' => 'gma', 'Glyma.10G033500' => 'gma', 'Glyma.10G185200' => 'gma', 'Glyma.17G004300' => 'gma', 'Glyma.19G161900' => 'gma', 'Glyma.20G205100' => 'gma', 'Glyma.20G205200' => 'gma', 'Gohir.A01G139101' => 'ghi', 'Gohir.A02G035600' => 'ghi', 'Gohir.A02G117901' => 'ghi', 'Gohir.A07G210100' => 'ghi', 'Gohir.A07G210200' => 'ghi', 'Gohir.A08G061100' => 'ghi', 'Gohir.A09G223000' => 'ghi', 'Gohir.A09G223100' => 'ghi', 'Gohir.A10G113900' => 'ghi', 'Gohir.A10G114000' => 'ghi', 'Gohir.D02G042300' => 'ghi', 'Gohir.D07G216100' => 'ghi', 'Gohir.D07G216200' => 'ghi', 'Gohir.D08G070400' => 'ghi', 'Gohir.D09G225000' => 'ghi', 'Gohir.D09G225100' => 'ghi', 'Gohir.D10G152300' => 'ghi', 'Gohir.D10G153200' => 'ghi', 'Gohir.D11G133701' => 'ghi', 'Gorai.004G074100' => 'gra', 'Gorai.005G046800' => 'gra', 'Gorai.006G246500' => 'gra', 'Gorai.006G246600' => 'gra', 'Gorai.007G142900' => 'gra', 'Gorai.011G171000' => 'gra', 'Gorai.011G171100' => 'gra', 'Gorai.013G104300' => 'gra', 'Gorai.013G104400' => 'gra', 'GSVIVG01000754001' => 'vvi', 'GSVIVG01000756001' => 'vvi', 'GSVIVG01010903001' => 'vvi', 'GSVIVG01017623001' => 'vvi', 'GSVIVG01018113001' => 'vvi', 'GSVIVG01018116001' => 'vvi', 'GSVIVG01018118001' => 'vvi', 'HanXRQChr03g0076211' => 'han', 'HanXRQChr03g0092431' => 'han', 'HanXRQChr03g0092441' => 'han', 'HanXRQChr03g0092591' => 'han', 'HanXRQChr03g0092671' => 'han', 'HanXRQChr03g0092681' => 'han', 'HanXRQChr03g0092691' => 'han', 'HanXRQChr03g0092701' => 'han', 'HanXRQChr03g0092721' => 'han', 'HanXRQChr03g0092731' => 'han', 'HanXRQChr04g0113681' => 'han', 'HanXRQChr10g0281371' => 'han', 'HanXRQChr11g0337141' => 'han', 'HanXRQChr13g0424521' => 'han', 'HanXRQChr13g0424531' => 'han', 'HanXRQChr13g0424541' => 'han', 'HanXRQChr16g0498221' => 'han', 'Haze_04377' => 'cav', 'Haze_11298' => 'cav', 'Haze_24547' => 'cav', 'Haze_24550' => 'cav', 'Haze_26587' => 'cav', 'Hma1.2p1_0650F.1_g195410' => 'hma', 'Hma1.2p1_0893F.1_g233470' => 'hma', 'HPP92_006508' => 'vpl', 'HPP92_024780' => 'vpl', 'Hund02688' => 'sun', 'Hund09380' => 'sun', 'Hund09381' => 'sun', 'Hund09832' => 'sun', 'Hund09833' => 'sun', 'Hund11351' => 'sun', 'Hund11513' => 'sun', 'Lalb_Chr06g0162591' => 'lal', 'Lalb_Chr06g0162601' => 'lal', 'Lalb_Chr06g0169321' => 'lal', 'Lalb_Chr09g0330951' => 'lal', 'Lalb_Chr16g0387631' => 'lal', 'Lalb_Chr21g0306241' => 'lal', 'Lalb_Chr25g0290051' => 'lal', 'Lalb_Chr25g0290061' => 'lal', 'Lalb_Chr25g0290071' => 'lal', 'Lj1g0003876' => 'lja', 'Lj1P1207T36' => 'lonja', 'Lj2C1156G12' => 'lonja', 'Lj3A793G39' => 'lonja', 'Lj3C580G2' => 'lonja', 'Lj3C780G2' => 'lonja', 'Lj3C780T4' => 'lonja', 'Lj3C793G9' => 'lonja', 'Lj4g0012960' => 'lja', 'Lj5g0021252' => 'lja', 'Lj5g0021484' => 'lja', 'Lj5g0024528' => 'lja', 'Lj6A399T12' => 'lonja', 'Lj6A656G65' => 'lonja', 'Lsat_1_v5_gn_3_125500' => 'lsa', 'Lsat_1_v5_gn_3_125540' => 'lsa', 'Lsat_1_v5_gn_5_72701' => 'lsa', 'Lsat_1_v5_gn_8_91560' => 'lsa', 'Lsat_1_v5_gn_9_9640' => 'lsa', 'Manes.01G200600' => 'mes', 'Manes.01G200700' => 'mes', 'Manes.03G168900' => 'mes', 'Manes.03G169000' => 'mes', 'Manes.05G085801' => 'mes', 'Manes.05G086200' => 'mes', 'Manes.15G036700' => 'mes', 'Manes.15G036900' => 'mes', 'Mapoly0004s0172' => 'mpo', 'Mapoly0023s0001' => 'mpo', 'Mapoly0142s0012' => 'mpo', 'MBI01_g32854_MAGBIO' => 'mbi', 'MBI11_g24427_MAGBIO' => 'mbi', 'MBI11_g47319_MAGBIO' => 'mbi', 'MCO01G433' => 'mco', 'MD00G1187800' => 'mdo', 'MD04G1226500' => 'mdo', 'MD05G1203900' => 'mdo', 'MD10G1191100' => 'mdo', 'MD12G1243500' => 'mdo', 'MD13G1207000' => 'mdo', 'MD13G1207100' => 'mdo', 'MD16G1208600' => 'mdo', 'Medtr1g050352' => 'mtr', 'Medtr1g070385' => 'mtr', 'Medtr1g070450' => 'mtr', 'Medtr1g075200' => 'mtr', 'Medtr1g075250' => 'mtr', 'Medtr1g075260' => 'mtr', 'Medtr1g475250' => 'mtr', 'Medtr4g075450' => 'mtr', 'Medtr7g096300' => 'mtr', 'Medtr8g105110' => 'mtr', 'MELO3C006470.2' => 'cme', 'MELO3C006471.2' => 'cme', 'MELO3C020772.2' => 'cme', 'MELO3C026780.2' => 'cme', 'MELO3C026781.2' => 'cme', 'Migut.D00390' => 'egut', 'Migut.G00435' => 'egut', 'Migut.G00436' => 'egut', 'Migut.G00718' => 'egut', 'MSTRG.21891' => 'ama', 'MSTRG.26910' => 'ama', 'MSTRG.4099' => 'ama', 'MSTRG.9925' => 'ama', 'Nitab4.5_0000165g0010' => 'nta', 'Nitab4.5_0000209g0180' => 'nta', 'Nitab4.5_0000244g0440' => 'nta', 'Nitab4.5_0000525g0220' => 'nta', 'Nitab4.5_0001597g0020' => 'nta', 'Nitab4.5_0001878g0040' => 'nta', 'Nitab4.5_0001878g0060' => 'nta', 'Nitab4.5_0002838g0100' => 'nta', 'Nitab4.5_0002838g0120' => 'nta', 'Nitab4.5_0004798g0030' => 'nta', 'Nitab4.5_0005420g0010' => 'nta', 'Nitab4.5_0005507g0010' => 'nta', 'Nitab4.5_0005574g0020' => 'nta', 'Nitab4.5_0005838g0010' => 'nta', 'Nitab4.5_0010580g0020' => 'nta', 'Nn1g02599' => 'nnu', 'Nn1g02608' => 'nnu', 'Nn3g17742' => 'nnu', 'Nn3g19534' => 'nnu', 'Nn3g19535' => 'nnu', 'Oeu008790.1' => 'oeu', 'Oeu008792.1' => 'oeu', 'Oeu032590.1' => 'oeu', 'Oeu035349.1' => 'oeu', 'Oeu049791.1' => 'oeu', 'Os01g0774500' => 'osa', 'Os03g0628800' => 'osa', 'Os03g0798600' => 'osa', 'Os05g0508800' => 'osa', 'Peaxi162Scf00036g02018' => 'pax', 'Peaxi162Scf00578g00032' => 'pax', 'Peaxi162Scf00578g00317' => 'pax', 'Peaxi162Scf00785g00114' => 'pax', 'Peaxi162Scf00813g00119' => 'pax', 'Peaxi162Scf00906g00227' => 'pax', 'PGR004G0875' => 'pgr', 'PGR004G2424' => 'pgr', 'PGR031G1239' => 'pgr', 'PGR031G2474' => 'pgr', 'PGR044G0423' => 'pgr', 'PGSC0003DMG400001128' => 'stu', 'PGSC0003DMG400007336' => 'stu', 'PGSC0003DMG400016318' => 'stu', 'PGSC0003DMG400016319' => 'stu', 'PGSC0003DMG400018074' => 'stu', 'Phvul.001G157700' => 'pvu', 'Phvul.002G148550' => 'pvu', 'Phvul.002G320200' => 'pvu', 'Phvul.003G089200' => 'pvu', 'Phvul.007G126000' => 'pvu', 'Phvul.007G126100' => 'pvu', 'Phvul.007G178000' => 'pvu', 'Phvul.007G178200' => 'pvu', 'Potri.002G043000' => 'ptr', 'Potri.002G043200' => 'ptr', 'Potri.003G123750' => 'ptr', 'Potri.005G055401' => 'ptr', 'Potri.005G219700' => 'ptr', 'Potri.005G220000' => 'ptr', 'Potri.008G161901' => 'ptr', 'Potri.008G162000' => 'ptr', 'Potri.008G162400' => 'ptr', 'Potri.010G076900' => 'ptr', 'Pp3c12_9180' => 'ppa', 'Pp3c13_19770' => 'ppa', 'Pp3c14_22950' => 'ppa', 'Pp3c16_12160' => 'ppa', 'Pp3c27_7820' => 'ppa', 'Pp3c2_3490' => 'ppa', 'Pp3c3_23700' => 'ppa', 'Pp3c3_36520' => 'ppa', 'Pp3c4_15250' => 'ppa', 'PRCOL_00007002' => 'pco', 'Prupe.1G030600' => 'ppe', 'Prupe.1G030700' => 'ppe', 'Prupe.6G345200' => 'ppe', 'Prupe.8G230300' => 'ppe', 'Prupe.8G230500' => 'ppe', 'Psat3g059600' => 'psa', 'Psat5g200920' => 'psa', 'Psat6g056440' => 'psa', 'Psat6g057360' => 'psa', 'Psat6g134120' => 'psa', 'Psat6g134160' => 'psa', 'Psat7g008640' => 'psa', 'Psat7g185240' => 'psa', 'PSO017G1330' => 'pso', 'PSO063G6097' => 'pso', 'PSO170G0835' => 'pso', 'PSO170G2499' => 'pso', 'PSO210G5058' => 'pso', 'PSO210G6154' => 'pso', 'PSO585G0031' => 'pso', 'PSO832G0264' => 'pso', 'PSO832G4288' => 'pso', 'QL03p027355' => 'qlo', 'QL03p027430' => 'qlo', 'QL04p081380' => 'qlo', 'QL06p015642' => 'qlo', 'QL06p015650' => 'qlo', 'QL06p015686' => 'qlo', 'QL12p042927' => 'qlo', 'QL93p1863_0035' => 'qlo', 'RcHm_v2.0_Chr3g0450581' => 'rch', 'RcHm_v2.0_Chr4g0390371' => 'rch', 'RcHm_v2.0_Chr4g0390381' => 'rch', 'RcHm_v2.0_Chr4g0390491' => 'rch', 'RcHm_v2.0_Chr4g0390501' => 'rch', 'RcHm_v2.0_Chr6g0289231' => 'rch', 'Rhsim04G0190400' => 'rsi', 'Rhsim04G0190500' => 'rsi', 'Rhsim04G0190600' => 'rsi', 'Rhsim13G0031400' => 'rsi', 'Rhsim13G0165600' => 'rsi', 'RhsimUnG0114600' => 'rsi', 'RhsimUnG0114700' => 'rsi', 'Sabra02G0034800' => 'sbr', 'Sabra02G0035100' => 'sbr', 'Sabra05G0168600' => 'sbr', 'Sabra05G0168800' => 'sbr', 'Sabra08G0123700' => 'sbr', 'Sabra10G0031900' => 'sbr', 'Sabra13G0039000' => 'sbr', 'SalBow2G0782' => 'sbo', 'SalBow2G1403' => 'sbo', 'SalBow4G0074' => 'sbo', 'SalBow4G2635' => 'sbo', 'SalBow5G3010' => 'sbo', 'Sc05g0000870' => 'sci', 'Sc05g0000890' => 'sci', 'Sc13g0005000' => 'sci', 'Sc13g0005030' => 'sci', 'Sc19g0003790' => 'sci', 'Sc19g0003800' => 'sci', 'Sed0003467' => 'sed', 'Sed0009355' => 'sed', 'Sed0009894' => 'sed', 'Sed0011972' => 'sed', 'Sed0021483' => 'sed', 'Sed0021750' => 'sed', 'Sed0026279' => 'sed', 'SEGI_05312' => 'sgi', 'SEGI_10112' => 'sgi', 'SEGI_15835' => 'sgi', 'SEGI_30386' => 'sgi', 'SEGI_34122' => 'sgi', 'SEGI_35063' => 'sgi', 'SGA_v2.0_scaffold101G29794' => 'sas', 'SGA_v2.0_scaffold1G00573' => 'sas', 'SGA_v2.0_scaffold79G25637' => 'sas', 'SGA_v2.0_scaffold88G27283' => 'sas', 'SGA_v2.0_scaffold88G27285' => 'sas', 'SGA_v2.0_scaffold88G27331' => 'sas', 'SHI09937' => 'shi', 'SMO119G0302' => 'smo', 'SMO137G0231' => 'smo', 'SMO367G1151' => 'smo', 'Solyc02g082000.3' => 'sly', 'Solyc06g031670.3' => 'sly', 'Solyc06g053810.3' => 'sly', 'Solyc07g025457.1' => 'sly', 'Solyc08g059740.1' => 'sly', 'Solyc08g059750.3' => 'sly', 'Solyc09g083370.3' => 'sly', 'Solyc12g038950.3' => 'sly', 'Sopen02g026630' => 'spe', 'Sopen06g018930' => 'spe', 'Sopen06g018940' => 'spe', 'Sopen08g009460' => 'spe', 'Sopen09g032290' => 'spe', 'Sp1g03080' => 'spa', 'Sp1g03090' => 'spa', 'Sp1g05480' => 'spa', 'Sp2g07860' => 'spa', 'Sp2g08430' => 'spa', 'Sp2g08440' => 'spa', 'Sp2g26200' => 'spa', 'Sp4g13170' => 'spa', 'Sp6g33840' => 'spa', 'SpUn1204_0010' => 'spa', 'TAR365G0908' => 'tar', 'TAR381G1270' => 'tar', 'TAR381G1651' => 'tar', 'TAR625G1131' => 'tar', 'TAR633G0962' => 'tar', 'TAR633G1729' => 'tar', 'TAR633G1864' => 'tar', 'TAR636G0221' => 'tar', 'TAR636G0314' => 'tar', 'TAR636G3202' => 'tar', 'THA.LOC104800805' => 'tha', 'THA.LOC104801096' => 'tha', 'THA.LOC104801555' => 'tha', 'THA.LOC104808491' => 'tha', 'THA.LOC104808595' => 'tha', 'THA.LOC104815985' => 'tha', 'THA.LOC104822250' => 'tha', 'THA.LOC104826071' => 'tha', 'Thecc.01G265200' => 'tca', 'Thecc.01G265300' => 'tca', 'Thecc.01G265700' => 'tca', 'Thecc.03G109100' => 'tca', 'Thecc.04G245900' => 'tca', 'Thecc.04G246000' => 'tca', 'Thhalv10003334m.g' => 'esa', 'Thhalv10005508m.g' => 'esa', 'Thhalv10005643m.g' => 'esa', 'Thhalv10007316m.g' => 'esa', 'Thhalv10009006m.g' => 'esa', 'Thhalv10009309m.g' => 'esa', 'Thhalv10014917m.g' => 'esa', 'Thhalv10014919m.g' => 'esa', 'Thhalv10015393m.g' => 'esa', 'Thhalv10016515m.g' => 'esa', 'Thhalv10029242m.g' => 'esa', 'TPR.G16654' => 'tpr', 'TPR.G20589' => 'tpr', 'TPR.G23029' => 'tpr', 'TPR.G27731' => 'tpr', 'TPR.G28889' => 'tpr', 'TPR.G28899' => 'tpr', 'TPR.G30846' => 'tpr', 'TPR.G5452' => 'tpr', 'TPR.G5713' => 'tpr', 'TPR.G9046' => 'tpr', 'TPR.G9061' => 'tpr', 'TWI09G1075' => 'twi', 'TWI12G0806' => 'twi', 'TWI18G0108' => 'twi', 'TWI53G1361' => 'twi', 'TWI73G0185' => 'twi', 'TWI73G0427' => 'twi', 'unitig_37.g12001' => 'ugi', 'unitig_747.g21660' => 'ugi', 'unitig_748.g7232' => 'ugi', 'unitig_748.g7315' => 'ugi', 'unitig_85.g27262' => 'ugi', 'unitig_92.g28220' => 'ugi', 'vmacro02632' => 'vma', 'vmacro08410' => 'vma', 'vmacro08411' => 'vma', 'vmacro15407' => 'vma', 'VMungo0251G3619' => 'vmu', 'VMungo0720G1204' => 'vmu', 'VMungo0720G1918' => 'vmu', 'VMungo0720G2387' => 'vmu', 'VMungo0720G2961' => 'vmu', 'VMungo1215G2154' => 'vmu', 'VMungo1383G2411' => 'vmu', 'Zm00001eb051130' => 'zma', 'Zm00001eb116830' => 'zma', 'Zm00001eb116850' => 'zma', 'Zm00001eb151740' => 'zma', 'Zm00001eb292360' => 'zma', 'Zm00001eb301640' => 'zma' ) $gf_id = 'HOM05D000856' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000856' ) $data_identifier = 'HOM05D000856' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 13, 'ath' => (int) 10, 'atr' => (int) 1, 'acertr' => (int) 8, 'cqu' => (int) 6, 'bca' => (int) 21, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 11, 'car' => (int) 9, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 8, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 5, 'fan' => (int) 16, 'fve' => (int) 6, 'gma' => (int) 11, 'ghi' => (int) 19, 'gra' => (int) 9, 'vvi' => (int) 7, 'han' => (int) 17, 'cav' => (int) 5, 'hma' => (int) 2, 'vpl' => (int) 2, 'sun' => (int) 7, 'lal' => (int) 9, 'lja' => (int) 5, 'lonja' => (int) 9, 'lsa' => (int) 5, 'mes' => (int) 8, 'mpo' => (int) 3, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 10, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 15, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 9, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 9, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 6, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 5, 'spa' => (int) 10, 'tar' => (int) 10, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 11, 'tpr' => (int) 11, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 4, 'vmu' => (int) 7, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb301640' $species_info = array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ) $local_species = 'bvu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000856', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p00010' => 'bna', 'A03p04160' => 'bna', 'A03p17160' => 'bna', 'A04p23370' => 'bna', 'A05p14860' => 'bna', 'A08p37020' => 'bna', 'A09p08050' => 'bna', 'A09p66800' => 'bna', 'A09p67940' => 'bna', 'A10p02680' => 'bna', 'A10p05320' => 'bna', 'Aa31LG1G20560' => 'aar', 'Aa31LG1G20610' => 'aar', 'Aa31LG1G7810' => 'aar', 'Aa31LG5G3590' => 'aar', 'Aa31LG5G6140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3819' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4683' => 'aag', 'Actinidia04480' => 'ach', 'Actinidia05466' => 'ach', 'Actinidia08445' => 'ach', 'Actinidia21170' => 'ach', 'Actinidia24812' => 'ach', 'Actinidia24951' => 'ach', 'Actinidia40088' => 'ach', 'Ah.02g111660' => 'amhyb', 'Ah.11g048900' => 'amhyb', 'Ah.11g049910' => 'amhyb', 'AL1G13870' => 'aly', 'AL1G13880' => 'aly', 'AL1G16760' => 'aly', 'AL390U10020' => 'aly', 'AL4G25520' => 'aly', 'AL6G19890' => 'aly', 'AL6G19900' => 'aly', 'AL6G19910' => 'aly', 'AL8G40100' => 'aly', 'Aqoxy2G03562' => 'aox', 'Aqoxy5G00316' => 'aox', 'Aqoxy5G00926' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1628KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1H403S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2FU6SJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.882I6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8YRY2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YN1SN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AF70II' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZA8L1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F916KL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHRD8H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KTZ8QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S22EMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8M29T' => 'arhy', 'AT1G04270' => 'ath', 'AT1G04280' => 'ath', 'AT1G06750' => 'ath', 'AT1G33850' => 'ath', 'AT2G30630' => 'ath', 'AT5G09490' => 'ath', 'AT5G09500' => 'ath', 'AT5G09510' => 'ath', 'AT5G43640' => 'ath', 'AT5G63070' => 'ath', 'ATR0605G315' => 'atr', 'Atru.chr11.175' => 'acertr', 'Atru.chr11.653' => 'acertr', 'Atru.chr3.1616' => 'acertr', 'Atru.chr4.2230' => 'acertr', 'Atru.chr4.2232' => 'acertr', 'Atru.chr5.1598' => 'acertr', 'Atru.chr5.1600' => 'acertr', 'Atru.chr5.2188' => 'acertr', 'AUR62008326' => 'cqu', 'AUR62011922' => 'cqu', 'AUR62011924' => 'cqu', 'AUR62021771' => 'cqu', 'AUR62032237' => 'cqu', 'AUR62032240' => 'cqu', 'BcaB01g05572' => 'bca', 'BcaB02g10337' => 'bca', 'BcaB04g19944' => 'bca', 'BcaB05g21548' => 'bca', 'BcaB05g21549' => 'bca', 'BcaB05g23227' => 'bca', 'BcaB06g26256' => 'bca', 'BcaB06g26257' => 'bca', 'BcaB06g28379' => 'bca', 'BcaC02g11159' => 'bca', 'BcaC03g13258' => 'bca', 'BcaC03g13259' => 'bca', 'BcaC05g24456' => 'bca', 'BcaC05g24457' => 'bca', 'BcaC07g36922' => 'bca', 'BcaC07g36923' => 'bca', 'BcaC07g42050' => 'bca', 'BcaC07g42176' => 'bca', 'BcaC07g42195' => 'bca', 'BcaC07g42196' => 'bca', 'BcaNung06674' => 'bca', 'BolC2t06351H' => 'bol', 'BolC2t06352H' => 'bol', 'BolC3t12993H' => 'bol', 'BolC4t23525H' => 'bol', 'BolC4t27475H' => 'bol', 'BolC5t29025H' => 'bol', 'BolC5t29026H' => 'bol', 'BolC8t46898H' => 'bol', 'BolC8t46899H' => 'bol', 'BolC8t52630H' => 'bol', 'BolC8t52765H' => 'bol', 'BolC9t53824H' => 'bol', 'BraA03t09760Z' => 'bra', 'BraA03t10990Z' => 'bra', 'BraA05t20413Z' => 'bra', 'BraA08t35602Z' => 'bra', 'BraA09t36458Z' => 'bra', 'BraA09t42018Z' => 'bra', 'BraA09t42129Z' => 'bra', 'BraA10t42536Z' => 'bra', 'BraA10t42537Z' => 'bra', 'C01p10690' => 'bna', 'C02p03890' => 'bna', 'C02p03900' => 'bna', 'C03p04620' => 'bna', 'C04p19870' => 'bna', 'C04p59670' => 'bna', 'C05p02460' => 'bna', 'C05p02470' => 'bna', 'C08p00980' => 'bna', 'C08p00990' => 'bna', 'C08p51030' => 'bna', 'C08p52360' => 'bna', 'C09p09120' => 'bna', 'CAN.G19.15' => 'can', 'CAN.G251.10' => 'can', 'CAN.G251.9' => 'can', 'CAN.G398.24' => 'can', 'CAN.G410.32' => 'can', 'CAN.G881.2' => 'can', 'CANSAT01G3025' => 'cansat', 'CANSAT78G1211' => 'cansat', 'CANSAT78G1218' => 'cansat', 'CANSAT78G1521' => 'cansat', 'CANSAT78G1670' => 'cansat', 'CARHR003600' => 'chi', 'CARHR003610' => 'chi', 'CARHR006290' => 'chi', 'CARHR006430' => 'chi', 'CARHR124110' => 'chi', 'CARHR203870' => 'chi', 'CARHR203880' => 'chi', 'CARHR203890' => 'chi', 'CARHR276880' => 'chi', 'Carub.0001s0346' => 'cru', 'Carub.0001s0347' => 'cru', 'Carub.0001s0607' => 'cru', 'Carub.0003s2768' => 'cru', 'Carub.0003s2769' => 'cru', 'Carub.0004s1178' => 'cru', 'Carub.0006s0806' => 'cru', 'Carub.0006s0807' => 'cru', 'Carub.0006s0808' => 'cru', 'Carub.0008s0501' => 'cru', 'Carub.0008s2379' => 'cru', 'Ca_08655_v3' => 'car', 'Ca_08922_v3' => 'car', 'Ca_08923_v3' => 'car', 'Ca_09119_v3' => 'car', 'Ca_09703_v3' => 'car', 'Ca_09705_v3' => 'car', 'Ca_09835_v3' => 'car', 'Ca_26403_v3' => 'car', 'Ca_30719_v3' => 'car', 'CBR_g17958' => 'cbr', 'CBR_g40516' => 'cbr', 'Cc00_g05350' => 'ccan', 'Cc01_g18690' => 'ccan', 'Cc03_g04830' => 'ccan', 'Cc03_g04850' => 'ccan', 'CDE02G4469' => 'cde', 'CDE06G0883' => 'cde', 'CDE06G1295' => 'cde', 'CDE06G1390' => 'cde', 'CDE07G0584' => 'cde', 'CDE07G1084' => 'cde', 'CDE08G1259' => 'cde', 'Cfa002341' => 'cfa', 'Cfa024337' => 'cfa', 'Ciclev10004749m.g' => 'ccl', 'Ciclev10006127m.g' => 'ccl', 'Ciclev10019720m.g' => 'ccl', 'Ciclev10022652m.g' => 'ccl', 'CiPaw.01G190400' => 'cil', 'CiPaw.01G190500' => 'cil', 'CiPaw.02G116400' => 'cil', 'CiPaw.02G116500' => 'cil', 'CiPaw.04G183000' => 'cil', 'CiPaw.04G183300' => 'cil', 'ClCG05G004610' => 'cla', 'ClCG05G004620' => 'cla', 'ClCG06G006730' => 'cla', 'ClCG06G006740' => 'cla', 'ClCG11G003690' => 'cla', 'COL.COLO4_08276' => 'col', 'COL.COLO4_08277' => 'col', 'COL.COLO4_15787' => 'col', 'COL.COLO4_15789' => 'col', 'Cpa.g.c44815' => 'cpa', 'Cpa.g.sc52.144' => 'cpa', 'Cpa.g.sc58.46' => 'cpa', 'Cpa.g.sc58.47' => 'cpa', 'Cre08.g360900' => 'cre', 'CsaV3_2G013030' => 'csa', 'CsaV3_2G013050' => 'csa', 'CsaV3_2G015620' => 'csa', 'CsaV3_3G012590' => 'csa', 'CsaV3_3G012600' => 'csa', 'CSS0001641' => 'camsi', 'CSS0008310' => 'camsi', 'CSS0013011' => 'camsi', 'CSS0017147' => 'camsi', 'CSS0022970' => 'camsi', 'CSS0025655' => 'camsi', 'CSS0028665' => 'camsi', 'CSS0029117' => 'camsi', 'CSS0032024' => 'camsi', 'CSS0039681' => 'camsi', 'CSS0046516' => 'camsi', 'CSS0050307' => 'camsi', 'DCAR_005871' => 'dca', 'DCAR_007342' => 'dca', 'DCAR_024228' => 'dca', 'DCAR_027277' => 'dca', 'DCAR_030718' => 'dca', 'Dinv20287' => 'din', 'Dinv22461' => 'din', 'Dinv22464' => 'din', 'Dinv29912' => 'din', 'Dinv29913' => 'din', 'Dinv34580' => 'din', 'Dinv34582' => 'din', 'Dinv44632' => 'din', 'Duzib052G0266' => 'dzi', 'Duzib133G0907' => 'dzi', 'Duzib133G1034' => 'dzi', 'Duzib138G0207' => 'dzi', 'Duzib138G0491' => 'dzi', 'Duzib151G0812' => 'dzi', 'Duzib151G1166' => 'dzi', 'Duzib168G0192' => 'dzi', 'Duzib211G0077' => 'dzi', 'Duzib212G0429' => 'dzi', 'Duzib212G0472' => 'dzi', 'ECA233G2617' => 'eca', 'ECA236G4188' => 'eca', 'ECA240G0936' => 'eca', 'ECA240G1129' => 'eca', 'ECA247G0623' => 'eca', 'EL10Ac5g10451' => 'bvu', 'EL10Ac5g10453' => 'bvu', 'EL10Ac5g10894' => 'bvu', 'Eucgr.H00192' => 'egr', 'Eucgr.H00193' => 'egr', 'Eucgr.H00194' => 'egr', 'Eucgr.J01562' => 'egr', 'Eucgr.K03301' => 'egr', 'FAN02G0632' => 'fan', 'FAN05G5378' => 'fan', 'FAN09G3247' => 'fan', 'FAN12G0435' => 'fan', 'FAN12G2426' => 'fan', 'FAN14G1707' => 'fan', 'FAN14G4725' => 'fan', 'FAN15G2071' => 'fan', 'FAN17G3065' => 'fan', 'FAN19G1376' => 'fan', 'FAN20G0354' => 'fan', 'FAN20G2429' => 'fan', 'FAN20G2658' => 'fan', 'FAN24G2343' => 'fan', 'FAN27G2362' => 'fan', 'FAN28G1765' => 'fan', 'FvH4_1g16020' => 'fve', 'FvH4_2g04890' => 'fve', 'FvH4_2g22270' => 'fve', 'FvH4_4g02630' => 'fve', 'FvH4_4g02640' => 'fve', 'FvH4_6g02650' => 'fve', 'Glyma.02G140600' => 'gma', 'Glyma.03G159900' => 'gma', 'Glyma.05G234800' => 'gma', 'Glyma.07G269600' => 'gma', 'Glyma.08G042300' => 'gma', 'Glyma.10G033500' => 'gma', 'Glyma.10G185200' => 'gma', 'Glyma.17G004300' => 'gma', 'Glyma.19G161900' => 'gma', 'Glyma.20G205100' => 'gma', 'Glyma.20G205200' => 'gma', 'Gohir.A01G139101' => 'ghi', 'Gohir.A02G035600' => 'ghi', 'Gohir.A02G117901' => 'ghi', 'Gohir.A07G210100' => 'ghi', 'Gohir.A07G210200' => 'ghi', 'Gohir.A08G061100' => 'ghi', 'Gohir.A09G223000' => 'ghi', 'Gohir.A09G223100' => 'ghi', 'Gohir.A10G113900' => 'ghi', 'Gohir.A10G114000' => 'ghi', 'Gohir.D02G042300' => 'ghi', 'Gohir.D07G216100' => 'ghi', 'Gohir.D07G216200' => 'ghi', 'Gohir.D08G070400' => 'ghi', 'Gohir.D09G225000' => 'ghi', 'Gohir.D09G225100' => 'ghi', 'Gohir.D10G152300' => 'ghi', 'Gohir.D10G153200' => 'ghi', 'Gohir.D11G133701' => 'ghi', 'Gorai.004G074100' => 'gra', 'Gorai.005G046800' => 'gra', 'Gorai.006G246500' => 'gra', 'Gorai.006G246600' => 'gra', 'Gorai.007G142900' => 'gra', 'Gorai.011G171000' => 'gra', 'Gorai.011G171100' => 'gra', 'Gorai.013G104300' => 'gra', 'Gorai.013G104400' => 'gra', 'GSVIVG01000754001' => 'vvi', 'GSVIVG01000756001' => 'vvi', 'GSVIVG01010903001' => 'vvi', 'GSVIVG01017623001' => 'vvi', 'GSVIVG01018113001' => 'vvi', 'GSVIVG01018116001' => 'vvi', 'GSVIVG01018118001' => 'vvi', 'HanXRQChr03g0076211' => 'han', 'HanXRQChr03g0092431' => 'han', 'HanXRQChr03g0092441' => 'han', 'HanXRQChr03g0092591' => 'han', 'HanXRQChr03g0092671' => 'han', 'HanXRQChr03g0092681' => 'han', 'HanXRQChr03g0092691' => 'han', 'HanXRQChr03g0092701' => 'han', 'HanXRQChr03g0092721' => 'han', 'HanXRQChr03g0092731' => 'han', 'HanXRQChr04g0113681' => 'han', 'HanXRQChr10g0281371' => 'han', 'HanXRQChr11g0337141' => 'han', 'HanXRQChr13g0424521' => 'han', 'HanXRQChr13g0424531' => 'han', 'HanXRQChr13g0424541' => 'han', 'HanXRQChr16g0498221' => 'han', 'Haze_04377' => 'cav', 'Haze_11298' => 'cav', 'Haze_24547' => 'cav', 'Haze_24550' => 'cav', 'Haze_26587' => 'cav', 'Hma1.2p1_0650F.1_g195410' => 'hma', 'Hma1.2p1_0893F.1_g233470' => 'hma', 'HPP92_006508' => 'vpl', 'HPP92_024780' => 'vpl', 'Hund02688' => 'sun', 'Hund09380' => 'sun', 'Hund09381' => 'sun', 'Hund09832' => 'sun', 'Hund09833' => 'sun', 'Hund11351' => 'sun', 'Hund11513' => 'sun', 'Lalb_Chr06g0162591' => 'lal', 'Lalb_Chr06g0162601' => 'lal', 'Lalb_Chr06g0169321' => 'lal', 'Lalb_Chr09g0330951' => 'lal', 'Lalb_Chr16g0387631' => 'lal', 'Lalb_Chr21g0306241' => 'lal', 'Lalb_Chr25g0290051' => 'lal', 'Lalb_Chr25g0290061' => 'lal', 'Lalb_Chr25g0290071' => 'lal', 'Lj1g0003876' => 'lja', 'Lj1P1207T36' => 'lonja', 'Lj2C1156G12' => 'lonja', 'Lj3A793G39' => 'lonja', 'Lj3C580G2' => 'lonja', 'Lj3C780G2' => 'lonja', 'Lj3C780T4' => 'lonja', 'Lj3C793G9' => 'lonja', 'Lj4g0012960' => 'lja', 'Lj5g0021252' => 'lja', 'Lj5g0021484' => 'lja', 'Lj5g0024528' => 'lja', 'Lj6A399T12' => 'lonja', 'Lj6A656G65' => 'lonja', 'Lsat_1_v5_gn_3_125500' => 'lsa', 'Lsat_1_v5_gn_3_125540' => 'lsa', 'Lsat_1_v5_gn_5_72701' => 'lsa', 'Lsat_1_v5_gn_8_91560' => 'lsa', 'Lsat_1_v5_gn_9_9640' => 'lsa', 'Manes.01G200600' => 'mes', 'Manes.01G200700' => 'mes', 'Manes.03G168900' => 'mes', 'Manes.03G169000' => 'mes', 'Manes.05G085801' => 'mes', 'Manes.05G086200' => 'mes', 'Manes.15G036700' => 'mes', 'Manes.15G036900' => 'mes', 'Mapoly0004s0172' => 'mpo', 'Mapoly0023s0001' => 'mpo', 'Mapoly0142s0012' => 'mpo', 'MBI01_g32854_MAGBIO' => 'mbi', 'MBI11_g24427_MAGBIO' => 'mbi', 'MBI11_g47319_MAGBIO' => 'mbi', 'MCO01G433' => 'mco', 'MD00G1187800' => 'mdo', 'MD04G1226500' => 'mdo', 'MD05G1203900' => 'mdo', 'MD10G1191100' => 'mdo', 'MD12G1243500' => 'mdo', 'MD13G1207000' => 'mdo', 'MD13G1207100' => 'mdo', 'MD16G1208600' => 'mdo', 'Medtr1g050352' => 'mtr', 'Medtr1g070385' => 'mtr', 'Medtr1g070450' => 'mtr', 'Medtr1g075200' => 'mtr', 'Medtr1g075250' => 'mtr', 'Medtr1g075260' => 'mtr', 'Medtr1g475250' => 'mtr', 'Medtr4g075450' => 'mtr', 'Medtr7g096300' => 'mtr', 'Medtr8g105110' => 'mtr', 'MELO3C006470.2' => 'cme', 'MELO3C006471.2' => 'cme', 'MELO3C020772.2' => 'cme', 'MELO3C026780.2' => 'cme', 'MELO3C026781.2' => 'cme', 'Migut.D00390' => 'egut', 'Migut.G00435' => 'egut', 'Migut.G00436' => 'egut', 'Migut.G00718' => 'egut', 'MSTRG.21891' => 'ama', 'MSTRG.26910' => 'ama', 'MSTRG.4099' => 'ama', 'MSTRG.9925' => 'ama', 'Nitab4.5_0000165g0010' => 'nta', 'Nitab4.5_0000209g0180' => 'nta', 'Nitab4.5_0000244g0440' => 'nta', 'Nitab4.5_0000525g0220' => 'nta', 'Nitab4.5_0001597g0020' => 'nta', 'Nitab4.5_0001878g0040' => 'nta', 'Nitab4.5_0001878g0060' => 'nta', 'Nitab4.5_0002838g0100' => 'nta', 'Nitab4.5_0002838g0120' => 'nta', 'Nitab4.5_0004798g0030' => 'nta', 'Nitab4.5_0005420g0010' => 'nta', 'Nitab4.5_0005507g0010' => 'nta', 'Nitab4.5_0005574g0020' => 'nta', 'Nitab4.5_0005838g0010' => 'nta', 'Nitab4.5_0010580g0020' => 'nta', 'Nn1g02599' => 'nnu', 'Nn1g02608' => 'nnu', 'Nn3g17742' => 'nnu', 'Nn3g19534' => 'nnu', 'Nn3g19535' => 'nnu', 'Oeu008790.1' => 'oeu', 'Oeu008792.1' => 'oeu', 'Oeu032590.1' => 'oeu', 'Oeu035349.1' => 'oeu', 'Oeu049791.1' => 'oeu', 'Os01g0774500' => 'osa', 'Os03g0628800' => 'osa', 'Os03g0798600' => 'osa', 'Os05g0508800' => 'osa', 'Peaxi162Scf00036g02018' => 'pax', 'Peaxi162Scf00578g00032' => 'pax', 'Peaxi162Scf00578g00317' => 'pax', 'Peaxi162Scf00785g00114' => 'pax', 'Peaxi162Scf00813g00119' => 'pax', 'Peaxi162Scf00906g00227' => 'pax', 'PGR004G0875' => 'pgr', 'PGR004G2424' => 'pgr', 'PGR031G1239' => 'pgr', 'PGR031G2474' => 'pgr', 'PGR044G0423' => 'pgr', 'PGSC0003DMG400001128' => 'stu', 'PGSC0003DMG400007336' => 'stu', 'PGSC0003DMG400016318' => 'stu', 'PGSC0003DMG400016319' => 'stu', 'PGSC0003DMG400018074' => 'stu', 'Phvul.001G157700' => 'pvu', 'Phvul.002G148550' => 'pvu', 'Phvul.002G320200' => 'pvu', 'Phvul.003G089200' => 'pvu', 'Phvul.007G126000' => 'pvu', 'Phvul.007G126100' => 'pvu', 'Phvul.007G178000' => 'pvu', 'Phvul.007G178200' => 'pvu', 'Potri.002G043000' => 'ptr', 'Potri.002G043200' => 'ptr', 'Potri.003G123750' => 'ptr', 'Potri.005G055401' => 'ptr', 'Potri.005G219700' => 'ptr', 'Potri.005G220000' => 'ptr', 'Potri.008G161901' => 'ptr', 'Potri.008G162000' => 'ptr', 'Potri.008G162400' => 'ptr', 'Potri.010G076900' => 'ptr', 'Pp3c12_9180' => 'ppa', 'Pp3c13_19770' => 'ppa', 'Pp3c14_22950' => 'ppa', 'Pp3c16_12160' => 'ppa', 'Pp3c27_7820' => 'ppa', 'Pp3c2_3490' => 'ppa', 'Pp3c3_23700' => 'ppa', 'Pp3c3_36520' => 'ppa', 'Pp3c4_15250' => 'ppa', 'PRCOL_00007002' => 'pco', 'Prupe.1G030600' => 'ppe', 'Prupe.1G030700' => 'ppe', 'Prupe.6G345200' => 'ppe', 'Prupe.8G230300' => 'ppe', 'Prupe.8G230500' => 'ppe', 'Psat3g059600' => 'psa', 'Psat5g200920' => 'psa', 'Psat6g056440' => 'psa', 'Psat6g057360' => 'psa', 'Psat6g134120' => 'psa', 'Psat6g134160' => 'psa', 'Psat7g008640' => 'psa', 'Psat7g185240' => 'psa', 'PSO017G1330' => 'pso', 'PSO063G6097' => 'pso', 'PSO170G0835' => 'pso', 'PSO170G2499' => 'pso', 'PSO210G5058' => 'pso', 'PSO210G6154' => 'pso', 'PSO585G0031' => 'pso', 'PSO832G0264' => 'pso', 'PSO832G4288' => 'pso', 'QL03p027355' => 'qlo', 'QL03p027430' => 'qlo', 'QL04p081380' => 'qlo', 'QL06p015642' => 'qlo', 'QL06p015650' => 'qlo', 'QL06p015686' => 'qlo', 'QL12p042927' => 'qlo', 'QL93p1863_0035' => 'qlo', 'RcHm_v2.0_Chr3g0450581' => 'rch', 'RcHm_v2.0_Chr4g0390371' => 'rch', 'RcHm_v2.0_Chr4g0390381' => 'rch', 'RcHm_v2.0_Chr4g0390491' => 'rch', 'RcHm_v2.0_Chr4g0390501' => 'rch', 'RcHm_v2.0_Chr6g0289231' => 'rch', 'Rhsim04G0190400' => 'rsi', 'Rhsim04G0190500' => 'rsi', 'Rhsim04G0190600' => 'rsi', 'Rhsim13G0031400' => 'rsi', 'Rhsim13G0165600' => 'rsi', 'RhsimUnG0114600' => 'rsi', 'RhsimUnG0114700' => 'rsi', 'Sabra02G0034800' => 'sbr', 'Sabra02G0035100' => 'sbr', 'Sabra05G0168600' => 'sbr', 'Sabra05G0168800' => 'sbr', 'Sabra08G0123700' => 'sbr', 'Sabra10G0031900' => 'sbr', 'Sabra13G0039000' => 'sbr', 'SalBow2G0782' => 'sbo', 'SalBow2G1403' => 'sbo', 'SalBow4G0074' => 'sbo', 'SalBow4G2635' => 'sbo', 'SalBow5G3010' => 'sbo', 'Sc05g0000870' => 'sci', 'Sc05g0000890' => 'sci', 'Sc13g0005000' => 'sci', 'Sc13g0005030' => 'sci', 'Sc19g0003790' => 'sci', 'Sc19g0003800' => 'sci', 'Sed0003467' => 'sed', 'Sed0009355' => 'sed', 'Sed0009894' => 'sed', 'Sed0011972' => 'sed', 'Sed0021483' => 'sed', 'Sed0021750' => 'sed', 'Sed0026279' => 'sed', 'SEGI_05312' => 'sgi', 'SEGI_10112' => 'sgi', 'SEGI_15835' => 'sgi', 'SEGI_30386' => 'sgi', 'SEGI_34122' => 'sgi', 'SEGI_35063' => 'sgi', 'SGA_v2.0_scaffold101G29794' => 'sas', 'SGA_v2.0_scaffold1G00573' => 'sas', 'SGA_v2.0_scaffold79G25637' => 'sas', 'SGA_v2.0_scaffold88G27283' => 'sas', 'SGA_v2.0_scaffold88G27285' => 'sas', 'SGA_v2.0_scaffold88G27331' => 'sas', 'SHI09937' => 'shi', 'SMO119G0302' => 'smo', 'SMO137G0231' => 'smo', 'SMO367G1151' => 'smo', 'Solyc02g082000.3' => 'sly', 'Solyc06g031670.3' => 'sly', 'Solyc06g053810.3' => 'sly', 'Solyc07g025457.1' => 'sly', 'Solyc08g059740.1' => 'sly', 'Solyc08g059750.3' => 'sly', 'Solyc09g083370.3' => 'sly', 'Solyc12g038950.3' => 'sly', 'Sopen02g026630' => 'spe', 'Sopen06g018930' => 'spe', 'Sopen06g018940' => 'spe', 'Sopen08g009460' => 'spe', 'Sopen09g032290' => 'spe', 'Sp1g03080' => 'spa', 'Sp1g03090' => 'spa', 'Sp1g05480' => 'spa', 'Sp2g07860' => 'spa', 'Sp2g08430' => 'spa', 'Sp2g08440' => 'spa', 'Sp2g26200' => 'spa', 'Sp4g13170' => 'spa', 'Sp6g33840' => 'spa', 'SpUn1204_0010' => 'spa', 'TAR365G0908' => 'tar', 'TAR381G1270' => 'tar', 'TAR381G1651' => 'tar', 'TAR625G1131' => 'tar', 'TAR633G0962' => 'tar', 'TAR633G1729' => 'tar', 'TAR633G1864' => 'tar', 'TAR636G0221' => 'tar', 'TAR636G0314' => 'tar', 'TAR636G3202' => 'tar', 'THA.LOC104800805' => 'tha', 'THA.LOC104801096' => 'tha', 'THA.LOC104801555' => 'tha', 'THA.LOC104808491' => 'tha', 'THA.LOC104808595' => 'tha', 'THA.LOC104815985' => 'tha', 'THA.LOC104822250' => 'tha', 'THA.LOC104826071' => 'tha', 'Thecc.01G265200' => 'tca', 'Thecc.01G265300' => 'tca', 'Thecc.01G265700' => 'tca', 'Thecc.03G109100' => 'tca', 'Thecc.04G245900' => 'tca', 'Thecc.04G246000' => 'tca', 'Thhalv10003334m.g' => 'esa', 'Thhalv10005508m.g' => 'esa', 'Thhalv10005643m.g' => 'esa', 'Thhalv10007316m.g' => 'esa', 'Thhalv10009006m.g' => 'esa', 'Thhalv10009309m.g' => 'esa', 'Thhalv10014917m.g' => 'esa', 'Thhalv10014919m.g' => 'esa', 'Thhalv10015393m.g' => 'esa', 'Thhalv10016515m.g' => 'esa', 'Thhalv10029242m.g' => 'esa', 'TPR.G16654' => 'tpr', 'TPR.G20589' => 'tpr', 'TPR.G23029' => 'tpr', 'TPR.G27731' => 'tpr', 'TPR.G28889' => 'tpr', 'TPR.G28899' => 'tpr', 'TPR.G30846' => 'tpr', 'TPR.G5452' => 'tpr', 'TPR.G5713' => 'tpr', 'TPR.G9046' => 'tpr', 'TPR.G9061' => 'tpr', 'TWI09G1075' => 'twi', 'TWI12G0806' => 'twi', 'TWI18G0108' => 'twi', 'TWI53G1361' => 'twi', 'TWI73G0185' => 'twi', 'TWI73G0427' => 'twi', 'unitig_37.g12001' => 'ugi', 'unitig_747.g21660' => 'ugi', 'unitig_748.g7232' => 'ugi', 'unitig_748.g7315' => 'ugi', 'unitig_85.g27262' => 'ugi', 'unitig_92.g28220' => 'ugi', 'vmacro02632' => 'vma', 'vmacro08410' => 'vma', 'vmacro08411' => 'vma', 'vmacro15407' => 'vma', 'VMungo0251G3619' => 'vmu', 'VMungo0720G1204' => 'vmu', 'VMungo0720G1918' => 'vmu', 'VMungo0720G2387' => 'vmu', 'VMungo0720G2961' => 'vmu', 'VMungo1215G2154' => 'vmu', 'VMungo1383G2411' => 'vmu', 'Zm00001eb051130' => 'zma', 'Zm00001eb116830' => 'zma', 'Zm00001eb116850' => 'zma', 'Zm00001eb151740' => 'zma', 'Zm00001eb292360' => 'zma', 'Zm00001eb301640' => 'zma' ), 'gf_id' => 'HOM05D000856', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000856' ), 'data_identifier' => 'HOM05D000856', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000856', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p00010' => 'bna', 'A03p04160' => 'bna', 'A03p17160' => 'bna', 'A04p23370' => 'bna', 'A05p14860' => 'bna', 'A08p37020' => 'bna', 'A09p08050' => 'bna', 'A09p66800' => 'bna', 'A09p67940' => 'bna', 'A10p02680' => 'bna', 'A10p05320' => 'bna', 'Aa31LG1G20560' => 'aar', 'Aa31LG1G20610' => 'aar', 'Aa31LG1G7810' => 'aar', 'Aa31LG5G3590' => 'aar', 'Aa31LG5G6140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3819' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4683' => 'aag', 'Actinidia04480' => 'ach', 'Actinidia05466' => 'ach', 'Actinidia08445' => 'ach', 'Actinidia21170' => 'ach', 'Actinidia24812' => 'ach', 'Actinidia24951' => 'ach', 'Actinidia40088' => 'ach', 'Ah.02g111660' => 'amhyb', 'Ah.11g048900' => 'amhyb', 'Ah.11g049910' => 'amhyb', 'AL1G13870' => 'aly', 'AL1G13880' => 'aly', 'AL1G16760' => 'aly', 'AL390U10020' => 'aly', 'AL4G25520' => 'aly', 'AL6G19890' => 'aly', 'AL6G19900' => 'aly', 'AL6G19910' => 'aly', 'AL8G40100' => 'aly', 'Aqoxy2G03562' => 'aox', 'Aqoxy5G00316' => 'aox', 'Aqoxy5G00926' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1628KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1H403S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2FU6SJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.882I6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8YRY2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YN1SN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AF70II' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZA8L1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F916KL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHRD8H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KTZ8QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S22EMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8M29T' => 'arhy', 'AT1G04270' => 'ath', 'AT1G04280' => 'ath', 'AT1G06750' => 'ath', 'AT1G33850' => 'ath', 'AT2G30630' => 'ath', 'AT5G09490' => 'ath', 'AT5G09500' => 'ath', 'AT5G09510' => 'ath', 'AT5G43640' => 'ath', 'AT5G63070' => 'ath', 'ATR0605G315' => 'atr', 'Atru.chr11.175' => 'acertr', 'Atru.chr11.653' => 'acertr', 'Atru.chr3.1616' => 'acertr', 'Atru.chr4.2230' => 'acertr', 'Atru.chr4.2232' => 'acertr', 'Atru.chr5.1598' => 'acertr', 'Atru.chr5.1600' => 'acertr', 'Atru.chr5.2188' => 'acertr', 'AUR62008326' => 'cqu', 'AUR62011922' => 'cqu', 'AUR62011924' => 'cqu', 'AUR62021771' => 'cqu', 'AUR62032237' => 'cqu', 'AUR62032240' => 'cqu', 'BcaB01g05572' => 'bca', 'BcaB02g10337' => 'bca', 'BcaB04g19944' => 'bca', 'BcaB05g21548' => 'bca', 'BcaB05g21549' => 'bca', 'BcaB05g23227' => 'bca', 'BcaB06g26256' => 'bca', 'BcaB06g26257' => 'bca', 'BcaB06g28379' => 'bca', 'BcaC02g11159' => 'bca', 'BcaC03g13258' => 'bca', 'BcaC03g13259' => 'bca', 'BcaC05g24456' => 'bca', 'BcaC05g24457' => 'bca', 'BcaC07g36922' => 'bca', 'BcaC07g36923' => 'bca', 'BcaC07g42050' => 'bca', 'BcaC07g42176' => 'bca', 'BcaC07g42195' => 'bca', 'BcaC07g42196' => 'bca', 'BcaNung06674' => 'bca', 'BolC2t06351H' => 'bol', 'BolC2t06352H' => 'bol', 'BolC3t12993H' => 'bol', 'BolC4t23525H' => 'bol', 'BolC4t27475H' => 'bol', 'BolC5t29025H' => 'bol', 'BolC5t29026H' => 'bol', 'BolC8t46898H' => 'bol', 'BolC8t46899H' => 'bol', 'BolC8t52630H' => 'bol', 'BolC8t52765H' => 'bol', 'BolC9t53824H' => 'bol', 'BraA03t09760Z' => 'bra', 'BraA03t10990Z' => 'bra', 'BraA05t20413Z' => 'bra', 'BraA08t35602Z' => 'bra', 'BraA09t36458Z' => 'bra', 'BraA09t42018Z' => 'bra', 'BraA09t42129Z' => 'bra', 'BraA10t42536Z' => 'bra', 'BraA10t42537Z' => 'bra', 'C01p10690' => 'bna', 'C02p03890' => 'bna', 'C02p03900' => 'bna', 'C03p04620' => 'bna', 'C04p19870' => 'bna', 'C04p59670' => 'bna', 'C05p02460' => 'bna', 'C05p02470' => 'bna', 'C08p00980' => 'bna', 'C08p00990' => 'bna', 'C08p51030' => 'bna', 'C08p52360' => 'bna', 'C09p09120' => 'bna', 'CAN.G19.15' => 'can', 'CAN.G251.10' => 'can', 'CAN.G251.9' => 'can', 'CAN.G398.24' => 'can', 'CAN.G410.32' => 'can', 'CAN.G881.2' => 'can', 'CANSAT01G3025' => 'cansat', 'CANSAT78G1211' => 'cansat', 'CANSAT78G1218' => 'cansat', 'CANSAT78G1521' => 'cansat', 'CANSAT78G1670' => 'cansat', 'CARHR003600' => 'chi', 'CARHR003610' => 'chi', 'CARHR006290' => 'chi', 'CARHR006430' => 'chi', 'CARHR124110' => 'chi', 'CARHR203870' => 'chi', 'CARHR203880' => 'chi', 'CARHR203890' => 'chi', 'CARHR276880' => 'chi', 'Carub.0001s0346' => 'cru', 'Carub.0001s0347' => 'cru', 'Carub.0001s0607' => 'cru', 'Carub.0003s2768' => 'cru', 'Carub.0003s2769' => 'cru', 'Carub.0004s1178' => 'cru', 'Carub.0006s0806' => 'cru', 'Carub.0006s0807' => 'cru', 'Carub.0006s0808' => 'cru', 'Carub.0008s0501' => 'cru', 'Carub.0008s2379' => 'cru', 'Ca_08655_v3' => 'car', 'Ca_08922_v3' => 'car', 'Ca_08923_v3' => 'car', 'Ca_09119_v3' => 'car', 'Ca_09703_v3' => 'car', 'Ca_09705_v3' => 'car', 'Ca_09835_v3' => 'car', 'Ca_26403_v3' => 'car', 'Ca_30719_v3' => 'car', 'CBR_g17958' => 'cbr', 'CBR_g40516' => 'cbr', 'Cc00_g05350' => 'ccan', 'Cc01_g18690' => 'ccan', 'Cc03_g04830' => 'ccan', 'Cc03_g04850' => 'ccan', 'CDE02G4469' => 'cde', 'CDE06G0883' => 'cde', 'CDE06G1295' => 'cde', 'CDE06G1390' => 'cde', 'CDE07G0584' => 'cde', 'CDE07G1084' => 'cde', 'CDE08G1259' => 'cde', 'Cfa002341' => 'cfa', 'Cfa024337' => 'cfa', 'Ciclev10004749m.g' => 'ccl', 'Ciclev10006127m.g' => 'ccl', 'Ciclev10019720m.g' => 'ccl', 'Ciclev10022652m.g' => 'ccl', 'CiPaw.01G190400' => 'cil', 'CiPaw.01G190500' => 'cil', 'CiPaw.02G116400' => 'cil', 'CiPaw.02G116500' => 'cil', 'CiPaw.04G183000' => 'cil', 'CiPaw.04G183300' => 'cil', 'ClCG05G004610' => 'cla', 'ClCG05G004620' => 'cla', 'ClCG06G006730' => 'cla', 'ClCG06G006740' => 'cla', 'ClCG11G003690' => 'cla', 'COL.COLO4_08276' => 'col', 'COL.COLO4_08277' => 'col', 'COL.COLO4_15787' => 'col', 'COL.COLO4_15789' => 'col', 'Cpa.g.c44815' => 'cpa', 'Cpa.g.sc52.144' => 'cpa', 'Cpa.g.sc58.46' => 'cpa', 'Cpa.g.sc58.47' => 'cpa', 'Cre08.g360900' => 'cre', 'CsaV3_2G013030' => 'csa', 'CsaV3_2G013050' => 'csa', 'CsaV3_2G015620' => 'csa', 'CsaV3_3G012590' => 'csa', 'CsaV3_3G012600' => 'csa', 'CSS0001641' => 'camsi', 'CSS0008310' => 'camsi', 'CSS0013011' => 'camsi', 'CSS0017147' => 'camsi', 'CSS0022970' => 'camsi', 'CSS0025655' => 'camsi', 'CSS0028665' => 'camsi', 'CSS0029117' => 'camsi', 'CSS0032024' => 'camsi', 'CSS0039681' => 'camsi', 'CSS0046516' => 'camsi', 'CSS0050307' => 'camsi', 'DCAR_005871' => 'dca', 'DCAR_007342' => 'dca', 'DCAR_024228' => 'dca', 'DCAR_027277' => 'dca', 'DCAR_030718' => 'dca', 'Dinv20287' => 'din', 'Dinv22461' => 'din', 'Dinv22464' => 'din', 'Dinv29912' => 'din', 'Dinv29913' => 'din', 'Dinv34580' => 'din', 'Dinv34582' => 'din', 'Dinv44632' => 'din', 'Duzib052G0266' => 'dzi', 'Duzib133G0907' => 'dzi', 'Duzib133G1034' => 'dzi', 'Duzib138G0207' => 'dzi', 'Duzib138G0491' => 'dzi', 'Duzib151G0812' => 'dzi', 'Duzib151G1166' => 'dzi', 'Duzib168G0192' => 'dzi', 'Duzib211G0077' => 'dzi', 'Duzib212G0429' => 'dzi', 'Duzib212G0472' => 'dzi', 'ECA233G2617' => 'eca', 'ECA236G4188' => 'eca', 'ECA240G0936' => 'eca', 'ECA240G1129' => 'eca', 'ECA247G0623' => 'eca', 'EL10Ac5g10451' => 'bvu', 'EL10Ac5g10453' => 'bvu', 'EL10Ac5g10894' => 'bvu', 'Eucgr.H00192' => 'egr', 'Eucgr.H00193' => 'egr', 'Eucgr.H00194' => 'egr', 'Eucgr.J01562' => 'egr', 'Eucgr.K03301' => 'egr', 'FAN02G0632' => 'fan', 'FAN05G5378' => 'fan', 'FAN09G3247' => 'fan', 'FAN12G0435' => 'fan', 'FAN12G2426' => 'fan', 'FAN14G1707' => 'fan', 'FAN14G4725' => 'fan', 'FAN15G2071' => 'fan', 'FAN17G3065' => 'fan', 'FAN19G1376' => 'fan', 'FAN20G0354' => 'fan', 'FAN20G2429' => 'fan', 'FAN20G2658' => 'fan', 'FAN24G2343' => 'fan', 'FAN27G2362' => 'fan', 'FAN28G1765' => 'fan', 'FvH4_1g16020' => 'fve', 'FvH4_2g04890' => 'fve', 'FvH4_2g22270' => 'fve', 'FvH4_4g02630' => 'fve', 'FvH4_4g02640' => 'fve', 'FvH4_6g02650' => 'fve', 'Glyma.02G140600' => 'gma', 'Glyma.03G159900' => 'gma', 'Glyma.05G234800' => 'gma', 'Glyma.07G269600' => 'gma', 'Glyma.08G042300' => 'gma', 'Glyma.10G033500' => 'gma', 'Glyma.10G185200' => 'gma', 'Glyma.17G004300' => 'gma', 'Glyma.19G161900' => 'gma', 'Glyma.20G205100' => 'gma', 'Glyma.20G205200' => 'gma', 'Gohir.A01G139101' => 'ghi', 'Gohir.A02G035600' => 'ghi', 'Gohir.A02G117901' => 'ghi', 'Gohir.A07G210100' => 'ghi', 'Gohir.A07G210200' => 'ghi', 'Gohir.A08G061100' => 'ghi', 'Gohir.A09G223000' => 'ghi', 'Gohir.A09G223100' => 'ghi', 'Gohir.A10G113900' => 'ghi', 'Gohir.A10G114000' => 'ghi', 'Gohir.D02G042300' => 'ghi', 'Gohir.D07G216100' => 'ghi', 'Gohir.D07G216200' => 'ghi', 'Gohir.D08G070400' => 'ghi', 'Gohir.D09G225000' => 'ghi', 'Gohir.D09G225100' => 'ghi', 'Gohir.D10G152300' => 'ghi', 'Gohir.D10G153200' => 'ghi', 'Gohir.D11G133701' => 'ghi', 'Gorai.004G074100' => 'gra', 'Gorai.005G046800' => 'gra', 'Gorai.006G246500' => 'gra', 'Gorai.006G246600' => 'gra', 'Gorai.007G142900' => 'gra', 'Gorai.011G171000' => 'gra', 'Gorai.011G171100' => 'gra', 'Gorai.013G104300' => 'gra', 'Gorai.013G104400' => 'gra', 'GSVIVG01000754001' => 'vvi', 'GSVIVG01000756001' => 'vvi', 'GSVIVG01010903001' => 'vvi', 'GSVIVG01017623001' => 'vvi', 'GSVIVG01018113001' => 'vvi', 'GSVIVG01018116001' => 'vvi', 'GSVIVG01018118001' => 'vvi', 'HanXRQChr03g0076211' => 'han', 'HanXRQChr03g0092431' => 'han', 'HanXRQChr03g0092441' => 'han', 'HanXRQChr03g0092591' => 'han', 'HanXRQChr03g0092671' => 'han', 'HanXRQChr03g0092681' => 'han', 'HanXRQChr03g0092691' => 'han', 'HanXRQChr03g0092701' => 'han', 'HanXRQChr03g0092721' => 'han', 'HanXRQChr03g0092731' => 'han', 'HanXRQChr04g0113681' => 'han', 'HanXRQChr10g0281371' => 'han', 'HanXRQChr11g0337141' => 'han', 'HanXRQChr13g0424521' => 'han', 'HanXRQChr13g0424531' => 'han', 'HanXRQChr13g0424541' => 'han', 'HanXRQChr16g0498221' => 'han', 'Haze_04377' => 'cav', 'Haze_11298' => 'cav', 'Haze_24547' => 'cav', 'Haze_24550' => 'cav', 'Haze_26587' => 'cav', 'Hma1.2p1_0650F.1_g195410' => 'hma', 'Hma1.2p1_0893F.1_g233470' => 'hma', 'HPP92_006508' => 'vpl', 'HPP92_024780' => 'vpl', 'Hund02688' => 'sun', 'Hund09380' => 'sun', 'Hund09381' => 'sun', 'Hund09832' => 'sun', 'Hund09833' => 'sun', 'Hund11351' => 'sun', 'Hund11513' => 'sun', 'Lalb_Chr06g0162591' => 'lal', 'Lalb_Chr06g0162601' => 'lal', 'Lalb_Chr06g0169321' => 'lal', 'Lalb_Chr09g0330951' => 'lal', 'Lalb_Chr16g0387631' => 'lal', 'Lalb_Chr21g0306241' => 'lal', 'Lalb_Chr25g0290051' => 'lal', 'Lalb_Chr25g0290061' => 'lal', 'Lalb_Chr25g0290071' => 'lal', 'Lj1g0003876' => 'lja', 'Lj1P1207T36' => 'lonja', 'Lj2C1156G12' => 'lonja', 'Lj3A793G39' => 'lonja', 'Lj3C580G2' => 'lonja', 'Lj3C780G2' => 'lonja', 'Lj3C780T4' => 'lonja', 'Lj3C793G9' => 'lonja', 'Lj4g0012960' => 'lja', 'Lj5g0021252' => 'lja', 'Lj5g0021484' => 'lja', 'Lj5g0024528' => 'lja', 'Lj6A399T12' => 'lonja', 'Lj6A656G65' => 'lonja', 'Lsat_1_v5_gn_3_125500' => 'lsa', 'Lsat_1_v5_gn_3_125540' => 'lsa', 'Lsat_1_v5_gn_5_72701' => 'lsa', 'Lsat_1_v5_gn_8_91560' => 'lsa', 'Lsat_1_v5_gn_9_9640' => 'lsa', 'Manes.01G200600' => 'mes', 'Manes.01G200700' => 'mes', 'Manes.03G168900' => 'mes', 'Manes.03G169000' => 'mes', 'Manes.05G085801' => 'mes', 'Manes.05G086200' => 'mes', 'Manes.15G036700' => 'mes', 'Manes.15G036900' => 'mes', 'Mapoly0004s0172' => 'mpo', 'Mapoly0023s0001' => 'mpo', 'Mapoly0142s0012' => 'mpo', 'MBI01_g32854_MAGBIO' => 'mbi', 'MBI11_g24427_MAGBIO' => 'mbi', 'MBI11_g47319_MAGBIO' => 'mbi', 'MCO01G433' => 'mco', 'MD00G1187800' => 'mdo', 'MD04G1226500' => 'mdo', 'MD05G1203900' => 'mdo', 'MD10G1191100' => 'mdo', 'MD12G1243500' => 'mdo', 'MD13G1207000' => 'mdo', 'MD13G1207100' => 'mdo', 'MD16G1208600' => 'mdo', 'Medtr1g050352' => 'mtr', 'Medtr1g070385' => 'mtr', 'Medtr1g070450' => 'mtr', 'Medtr1g075200' => 'mtr', 'Medtr1g075250' => 'mtr', 'Medtr1g075260' => 'mtr', 'Medtr1g475250' => 'mtr', 'Medtr4g075450' => 'mtr', 'Medtr7g096300' => 'mtr', 'Medtr8g105110' => 'mtr', 'MELO3C006470.2' => 'cme', 'MELO3C006471.2' => 'cme', 'MELO3C020772.2' => 'cme', 'MELO3C026780.2' => 'cme', 'MELO3C026781.2' => 'cme', 'Migut.D00390' => 'egut', 'Migut.G00435' => 'egut', 'Migut.G00436' => 'egut', 'Migut.G00718' => 'egut', 'MSTRG.21891' => 'ama', 'MSTRG.26910' => 'ama', 'MSTRG.4099' => 'ama', 'MSTRG.9925' => 'ama', 'Nitab4.5_0000165g0010' => 'nta', 'Nitab4.5_0000209g0180' => 'nta', 'Nitab4.5_0000244g0440' => 'nta', 'Nitab4.5_0000525g0220' => 'nta', 'Nitab4.5_0001597g0020' => 'nta', 'Nitab4.5_0001878g0040' => 'nta', 'Nitab4.5_0001878g0060' => 'nta', 'Nitab4.5_0002838g0100' => 'nta', 'Nitab4.5_0002838g0120' => 'nta', 'Nitab4.5_0004798g0030' => 'nta', 'Nitab4.5_0005420g0010' => 'nta', 'Nitab4.5_0005507g0010' => 'nta', 'Nitab4.5_0005574g0020' => 'nta', 'Nitab4.5_0005838g0010' => 'nta', 'Nitab4.5_0010580g0020' => 'nta', 'Nn1g02599' => 'nnu', 'Nn1g02608' => 'nnu', 'Nn3g17742' => 'nnu', 'Nn3g19534' => 'nnu', 'Nn3g19535' => 'nnu', 'Oeu008790.1' => 'oeu', 'Oeu008792.1' => 'oeu', 'Oeu032590.1' => 'oeu', 'Oeu035349.1' => 'oeu', 'Oeu049791.1' => 'oeu', 'Os01g0774500' => 'osa', 'Os03g0628800' => 'osa', 'Os03g0798600' => 'osa', 'Os05g0508800' => 'osa', 'Peaxi162Scf00036g02018' => 'pax', 'Peaxi162Scf00578g00032' => 'pax', 'Peaxi162Scf00578g00317' => 'pax', 'Peaxi162Scf00785g00114' => 'pax', 'Peaxi162Scf00813g00119' => 'pax', 'Peaxi162Scf00906g00227' => 'pax', 'PGR004G0875' => 'pgr', 'PGR004G2424' => 'pgr', 'PGR031G1239' => 'pgr', 'PGR031G2474' => 'pgr', 'PGR044G0423' => 'pgr', 'PGSC0003DMG400001128' => 'stu', 'PGSC0003DMG400007336' => 'stu', 'PGSC0003DMG400016318' => 'stu', 'PGSC0003DMG400016319' => 'stu', 'PGSC0003DMG400018074' => 'stu', 'Phvul.001G157700' => 'pvu', 'Phvul.002G148550' => 'pvu', 'Phvul.002G320200' => 'pvu', 'Phvul.003G089200' => 'pvu', 'Phvul.007G126000' => 'pvu', 'Phvul.007G126100' => 'pvu', 'Phvul.007G178000' => 'pvu', 'Phvul.007G178200' => 'pvu', 'Potri.002G043000' => 'ptr', 'Potri.002G043200' => 'ptr', 'Potri.003G123750' => 'ptr', 'Potri.005G055401' => 'ptr', 'Potri.005G219700' => 'ptr', 'Potri.005G220000' => 'ptr', 'Potri.008G161901' => 'ptr', 'Potri.008G162000' => 'ptr', 'Potri.008G162400' => 'ptr', 'Potri.010G076900' => 'ptr', 'Pp3c12_9180' => 'ppa', 'Pp3c13_19770' => 'ppa', 'Pp3c14_22950' => 'ppa', 'Pp3c16_12160' => 'ppa', 'Pp3c27_7820' => 'ppa', 'Pp3c2_3490' => 'ppa', 'Pp3c3_23700' => 'ppa', 'Pp3c3_36520' => 'ppa', 'Pp3c4_15250' => 'ppa', 'PRCOL_00007002' => 'pco', 'Prupe.1G030600' => 'ppe', 'Prupe.1G030700' => 'ppe', 'Prupe.6G345200' => 'ppe', 'Prupe.8G230300' => 'ppe', 'Prupe.8G230500' => 'ppe', 'Psat3g059600' => 'psa', 'Psat5g200920' => 'psa', 'Psat6g056440' => 'psa', 'Psat6g057360' => 'psa', 'Psat6g134120' => 'psa', 'Psat6g134160' => 'psa', 'Psat7g008640' => 'psa', 'Psat7g185240' => 'psa', 'PSO017G1330' => 'pso', 'PSO063G6097' => 'pso', 'PSO170G0835' => 'pso', 'PSO170G2499' => 'pso', 'PSO210G5058' => 'pso', 'PSO210G6154' => 'pso', 'PSO585G0031' => 'pso', 'PSO832G0264' => 'pso', 'PSO832G4288' => 'pso', 'QL03p027355' => 'qlo', 'QL03p027430' => 'qlo', 'QL04p081380' => 'qlo', 'QL06p015642' => 'qlo', 'QL06p015650' => 'qlo', 'QL06p015686' => 'qlo', 'QL12p042927' => 'qlo', 'QL93p1863_0035' => 'qlo', 'RcHm_v2.0_Chr3g0450581' => 'rch', 'RcHm_v2.0_Chr4g0390371' => 'rch', 'RcHm_v2.0_Chr4g0390381' => 'rch', 'RcHm_v2.0_Chr4g0390491' => 'rch', 'RcHm_v2.0_Chr4g0390501' => 'rch', 'RcHm_v2.0_Chr6g0289231' => 'rch', 'Rhsim04G0190400' => 'rsi', 'Rhsim04G0190500' => 'rsi', 'Rhsim04G0190600' => 'rsi', 'Rhsim13G0031400' => 'rsi', 'Rhsim13G0165600' => 'rsi', 'RhsimUnG0114600' => 'rsi', 'RhsimUnG0114700' => 'rsi', 'Sabra02G0034800' => 'sbr', 'Sabra02G0035100' => 'sbr', 'Sabra05G0168600' => 'sbr', 'Sabra05G0168800' => 'sbr', 'Sabra08G0123700' => 'sbr', 'Sabra10G0031900' => 'sbr', 'Sabra13G0039000' => 'sbr', 'SalBow2G0782' => 'sbo', 'SalBow2G1403' => 'sbo', 'SalBow4G0074' => 'sbo', 'SalBow4G2635' => 'sbo', 'SalBow5G3010' => 'sbo', 'Sc05g0000870' => 'sci', 'Sc05g0000890' => 'sci', 'Sc13g0005000' => 'sci', 'Sc13g0005030' => 'sci', 'Sc19g0003790' => 'sci', 'Sc19g0003800' => 'sci', 'Sed0003467' => 'sed', 'Sed0009355' => 'sed', 'Sed0009894' => 'sed', 'Sed0011972' => 'sed', 'Sed0021483' => 'sed', 'Sed0021750' => 'sed', 'Sed0026279' => 'sed', 'SEGI_05312' => 'sgi', 'SEGI_10112' => 'sgi', 'SEGI_15835' => 'sgi', 'SEGI_30386' => 'sgi', 'SEGI_34122' => 'sgi', 'SEGI_35063' => 'sgi', 'SGA_v2.0_scaffold101G29794' => 'sas', 'SGA_v2.0_scaffold1G00573' => 'sas', 'SGA_v2.0_scaffold79G25637' => 'sas', 'SGA_v2.0_scaffold88G27283' => 'sas', 'SGA_v2.0_scaffold88G27285' => 'sas', 'SGA_v2.0_scaffold88G27331' => 'sas', 'SHI09937' => 'shi', 'SMO119G0302' => 'smo', 'SMO137G0231' => 'smo', 'SMO367G1151' => 'smo', 'Solyc02g082000.3' => 'sly', 'Solyc06g031670.3' => 'sly', 'Solyc06g053810.3' => 'sly', 'Solyc07g025457.1' => 'sly', 'Solyc08g059740.1' => 'sly', 'Solyc08g059750.3' => 'sly', 'Solyc09g083370.3' => 'sly', 'Solyc12g038950.3' => 'sly', 'Sopen02g026630' => 'spe', 'Sopen06g018930' => 'spe', 'Sopen06g018940' => 'spe', 'Sopen08g009460' => 'spe', 'Sopen09g032290' => 'spe', 'Sp1g03080' => 'spa', 'Sp1g03090' => 'spa', 'Sp1g05480' => 'spa', 'Sp2g07860' => 'spa', 'Sp2g08430' => 'spa', 'Sp2g08440' => 'spa', 'Sp2g26200' => 'spa', 'Sp4g13170' => 'spa', 'Sp6g33840' => 'spa', 'SpUn1204_0010' => 'spa', 'TAR365G0908' => 'tar', 'TAR381G1270' => 'tar', 'TAR381G1651' => 'tar', 'TAR625G1131' => 'tar', 'TAR633G0962' => 'tar', 'TAR633G1729' => 'tar', 'TAR633G1864' => 'tar', 'TAR636G0221' => 'tar', 'TAR636G0314' => 'tar', 'TAR636G3202' => 'tar', 'THA.LOC104800805' => 'tha', 'THA.LOC104801096' => 'tha', 'THA.LOC104801555' => 'tha', 'THA.LOC104808491' => 'tha', 'THA.LOC104808595' => 'tha', 'THA.LOC104815985' => 'tha', 'THA.LOC104822250' => 'tha', 'THA.LOC104826071' => 'tha', 'Thecc.01G265200' => 'tca', 'Thecc.01G265300' => 'tca', 'Thecc.01G265700' => 'tca', 'Thecc.03G109100' => 'tca', 'Thecc.04G245900' => 'tca', 'Thecc.04G246000' => 'tca', 'Thhalv10003334m.g' => 'esa', 'Thhalv10005508m.g' => 'esa', 'Thhalv10005643m.g' => 'esa', 'Thhalv10007316m.g' => 'esa', 'Thhalv10009006m.g' => 'esa', 'Thhalv10009309m.g' => 'esa', 'Thhalv10014917m.g' => 'esa', 'Thhalv10014919m.g' => 'esa', 'Thhalv10015393m.g' => 'esa', 'Thhalv10016515m.g' => 'esa', 'Thhalv10029242m.g' => 'esa', 'TPR.G16654' => 'tpr', 'TPR.G20589' => 'tpr', 'TPR.G23029' => 'tpr', 'TPR.G27731' => 'tpr', 'TPR.G28889' => 'tpr', 'TPR.G28899' => 'tpr', 'TPR.G30846' => 'tpr', 'TPR.G5452' => 'tpr', 'TPR.G5713' => 'tpr', 'TPR.G9046' => 'tpr', 'TPR.G9061' => 'tpr', 'TWI09G1075' => 'twi', 'TWI12G0806' => 'twi', 'TWI18G0108' => 'twi', 'TWI53G1361' => 'twi', 'TWI73G0185' => 'twi', 'TWI73G0427' => 'twi', 'unitig_37.g12001' => 'ugi', 'unitig_747.g21660' => 'ugi', 'unitig_748.g7232' => 'ugi', 'unitig_748.g7315' => 'ugi', 'unitig_85.g27262' => 'ugi', 'unitig_92.g28220' => 'ugi', 'vmacro02632' => 'vma', 'vmacro08410' => 'vma', 'vmacro08411' => 'vma', 'vmacro15407' => 'vma', 'VMungo0251G3619' => 'vmu', 'VMungo0720G1204' => 'vmu', 'VMungo0720G1918' => 'vmu', 'VMungo0720G2387' => 'vmu', 'VMungo0720G2961' => 'vmu', 'VMungo1215G2154' => 'vmu', 'VMungo1383G2411' => 'vmu', 'Zm00001eb051130' => 'zma', 'Zm00001eb116830' => 'zma', 'Zm00001eb116850' => 'zma', 'Zm00001eb151740' => 'zma', 'Zm00001eb292360' => 'zma', 'Zm00001eb301640' => 'zma' ) $gf_id = 'HOM05D000856' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000856' ) $data_identifier = 'HOM05D000856' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 13, 'ath' => (int) 10, 'atr' => (int) 1, 'acertr' => (int) 8, 'cqu' => (int) 6, 'bca' => (int) 21, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 11, 'car' => (int) 9, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 8, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 5, 'fan' => (int) 16, 'fve' => (int) 6, 'gma' => (int) 11, 'ghi' => (int) 19, 'gra' => (int) 9, 'vvi' => (int) 7, 'han' => (int) 17, 'cav' => (int) 5, 'hma' => (int) 2, 'vpl' => (int) 2, 'sun' => (int) 7, 'lal' => (int) 9, 'lja' => (int) 5, 'lonja' => (int) 9, 'lsa' => (int) 5, 'mes' => (int) 8, 'mpo' => (int) 3, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 10, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 15, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 9, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 9, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 6, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 5, 'spa' => (int) 10, 'tar' => (int) 10, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 11, 'tpr' => (int) 11, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 4, 'vmu' => (int) 7, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb301640' $species_info = array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ) $local_species = 'bca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000856', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p00010' => 'bna', 'A03p04160' => 'bna', 'A03p17160' => 'bna', 'A04p23370' => 'bna', 'A05p14860' => 'bna', 'A08p37020' => 'bna', 'A09p08050' => 'bna', 'A09p66800' => 'bna', 'A09p67940' => 'bna', 'A10p02680' => 'bna', 'A10p05320' => 'bna', 'Aa31LG1G20560' => 'aar', 'Aa31LG1G20610' => 'aar', 'Aa31LG1G7810' => 'aar', 'Aa31LG5G3590' => 'aar', 'Aa31LG5G6140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3819' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4683' => 'aag', 'Actinidia04480' => 'ach', 'Actinidia05466' => 'ach', 'Actinidia08445' => 'ach', 'Actinidia21170' => 'ach', 'Actinidia24812' => 'ach', 'Actinidia24951' => 'ach', 'Actinidia40088' => 'ach', 'Ah.02g111660' => 'amhyb', 'Ah.11g048900' => 'amhyb', 'Ah.11g049910' => 'amhyb', 'AL1G13870' => 'aly', 'AL1G13880' => 'aly', 'AL1G16760' => 'aly', 'AL390U10020' => 'aly', 'AL4G25520' => 'aly', 'AL6G19890' => 'aly', 'AL6G19900' => 'aly', 'AL6G19910' => 'aly', 'AL8G40100' => 'aly', 'Aqoxy2G03562' => 'aox', 'Aqoxy5G00316' => 'aox', 'Aqoxy5G00926' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1628KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1H403S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2FU6SJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.882I6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8YRY2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YN1SN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AF70II' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZA8L1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F916KL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHRD8H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KTZ8QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S22EMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8M29T' => 'arhy', 'AT1G04270' => 'ath', 'AT1G04280' => 'ath', 'AT1G06750' => 'ath', 'AT1G33850' => 'ath', 'AT2G30630' => 'ath', 'AT5G09490' => 'ath', 'AT5G09500' => 'ath', 'AT5G09510' => 'ath', 'AT5G43640' => 'ath', 'AT5G63070' => 'ath', 'ATR0605G315' => 'atr', 'Atru.chr11.175' => 'acertr', 'Atru.chr11.653' => 'acertr', 'Atru.chr3.1616' => 'acertr', 'Atru.chr4.2230' => 'acertr', 'Atru.chr4.2232' => 'acertr', 'Atru.chr5.1598' => 'acertr', 'Atru.chr5.1600' => 'acertr', 'Atru.chr5.2188' => 'acertr', 'AUR62008326' => 'cqu', 'AUR62011922' => 'cqu', 'AUR62011924' => 'cqu', 'AUR62021771' => 'cqu', 'AUR62032237' => 'cqu', 'AUR62032240' => 'cqu', 'BcaB01g05572' => 'bca', 'BcaB02g10337' => 'bca', 'BcaB04g19944' => 'bca', 'BcaB05g21548' => 'bca', 'BcaB05g21549' => 'bca', 'BcaB05g23227' => 'bca', 'BcaB06g26256' => 'bca', 'BcaB06g26257' => 'bca', 'BcaB06g28379' => 'bca', 'BcaC02g11159' => 'bca', 'BcaC03g13258' => 'bca', 'BcaC03g13259' => 'bca', 'BcaC05g24456' => 'bca', 'BcaC05g24457' => 'bca', 'BcaC07g36922' => 'bca', 'BcaC07g36923' => 'bca', 'BcaC07g42050' => 'bca', 'BcaC07g42176' => 'bca', 'BcaC07g42195' => 'bca', 'BcaC07g42196' => 'bca', 'BcaNung06674' => 'bca', 'BolC2t06351H' => 'bol', 'BolC2t06352H' => 'bol', 'BolC3t12993H' => 'bol', 'BolC4t23525H' => 'bol', 'BolC4t27475H' => 'bol', 'BolC5t29025H' => 'bol', 'BolC5t29026H' => 'bol', 'BolC8t46898H' => 'bol', 'BolC8t46899H' => 'bol', 'BolC8t52630H' => 'bol', 'BolC8t52765H' => 'bol', 'BolC9t53824H' => 'bol', 'BraA03t09760Z' => 'bra', 'BraA03t10990Z' => 'bra', 'BraA05t20413Z' => 'bra', 'BraA08t35602Z' => 'bra', 'BraA09t36458Z' => 'bra', 'BraA09t42018Z' => 'bra', 'BraA09t42129Z' => 'bra', 'BraA10t42536Z' => 'bra', 'BraA10t42537Z' => 'bra', 'C01p10690' => 'bna', 'C02p03890' => 'bna', 'C02p03900' => 'bna', 'C03p04620' => 'bna', 'C04p19870' => 'bna', 'C04p59670' => 'bna', 'C05p02460' => 'bna', 'C05p02470' => 'bna', 'C08p00980' => 'bna', 'C08p00990' => 'bna', 'C08p51030' => 'bna', 'C08p52360' => 'bna', 'C09p09120' => 'bna', 'CAN.G19.15' => 'can', 'CAN.G251.10' => 'can', 'CAN.G251.9' => 'can', 'CAN.G398.24' => 'can', 'CAN.G410.32' => 'can', 'CAN.G881.2' => 'can', 'CANSAT01G3025' => 'cansat', 'CANSAT78G1211' => 'cansat', 'CANSAT78G1218' => 'cansat', 'CANSAT78G1521' => 'cansat', 'CANSAT78G1670' => 'cansat', 'CARHR003600' => 'chi', 'CARHR003610' => 'chi', 'CARHR006290' => 'chi', 'CARHR006430' => 'chi', 'CARHR124110' => 'chi', 'CARHR203870' => 'chi', 'CARHR203880' => 'chi', 'CARHR203890' => 'chi', 'CARHR276880' => 'chi', 'Carub.0001s0346' => 'cru', 'Carub.0001s0347' => 'cru', 'Carub.0001s0607' => 'cru', 'Carub.0003s2768' => 'cru', 'Carub.0003s2769' => 'cru', 'Carub.0004s1178' => 'cru', 'Carub.0006s0806' => 'cru', 'Carub.0006s0807' => 'cru', 'Carub.0006s0808' => 'cru', 'Carub.0008s0501' => 'cru', 'Carub.0008s2379' => 'cru', 'Ca_08655_v3' => 'car', 'Ca_08922_v3' => 'car', 'Ca_08923_v3' => 'car', 'Ca_09119_v3' => 'car', 'Ca_09703_v3' => 'car', 'Ca_09705_v3' => 'car', 'Ca_09835_v3' => 'car', 'Ca_26403_v3' => 'car', 'Ca_30719_v3' => 'car', 'CBR_g17958' => 'cbr', 'CBR_g40516' => 'cbr', 'Cc00_g05350' => 'ccan', 'Cc01_g18690' => 'ccan', 'Cc03_g04830' => 'ccan', 'Cc03_g04850' => 'ccan', 'CDE02G4469' => 'cde', 'CDE06G0883' => 'cde', 'CDE06G1295' => 'cde', 'CDE06G1390' => 'cde', 'CDE07G0584' => 'cde', 'CDE07G1084' => 'cde', 'CDE08G1259' => 'cde', 'Cfa002341' => 'cfa', 'Cfa024337' => 'cfa', 'Ciclev10004749m.g' => 'ccl', 'Ciclev10006127m.g' => 'ccl', 'Ciclev10019720m.g' => 'ccl', 'Ciclev10022652m.g' => 'ccl', 'CiPaw.01G190400' => 'cil', 'CiPaw.01G190500' => 'cil', 'CiPaw.02G116400' => 'cil', 'CiPaw.02G116500' => 'cil', 'CiPaw.04G183000' => 'cil', 'CiPaw.04G183300' => 'cil', 'ClCG05G004610' => 'cla', 'ClCG05G004620' => 'cla', 'ClCG06G006730' => 'cla', 'ClCG06G006740' => 'cla', 'ClCG11G003690' => 'cla', 'COL.COLO4_08276' => 'col', 'COL.COLO4_08277' => 'col', 'COL.COLO4_15787' => 'col', 'COL.COLO4_15789' => 'col', 'Cpa.g.c44815' => 'cpa', 'Cpa.g.sc52.144' => 'cpa', 'Cpa.g.sc58.46' => 'cpa', 'Cpa.g.sc58.47' => 'cpa', 'Cre08.g360900' => 'cre', 'CsaV3_2G013030' => 'csa', 'CsaV3_2G013050' => 'csa', 'CsaV3_2G015620' => 'csa', 'CsaV3_3G012590' => 'csa', 'CsaV3_3G012600' => 'csa', 'CSS0001641' => 'camsi', 'CSS0008310' => 'camsi', 'CSS0013011' => 'camsi', 'CSS0017147' => 'camsi', 'CSS0022970' => 'camsi', 'CSS0025655' => 'camsi', 'CSS0028665' => 'camsi', 'CSS0029117' => 'camsi', 'CSS0032024' => 'camsi', 'CSS0039681' => 'camsi', 'CSS0046516' => 'camsi', 'CSS0050307' => 'camsi', 'DCAR_005871' => 'dca', 'DCAR_007342' => 'dca', 'DCAR_024228' => 'dca', 'DCAR_027277' => 'dca', 'DCAR_030718' => 'dca', 'Dinv20287' => 'din', 'Dinv22461' => 'din', 'Dinv22464' => 'din', 'Dinv29912' => 'din', 'Dinv29913' => 'din', 'Dinv34580' => 'din', 'Dinv34582' => 'din', 'Dinv44632' => 'din', 'Duzib052G0266' => 'dzi', 'Duzib133G0907' => 'dzi', 'Duzib133G1034' => 'dzi', 'Duzib138G0207' => 'dzi', 'Duzib138G0491' => 'dzi', 'Duzib151G0812' => 'dzi', 'Duzib151G1166' => 'dzi', 'Duzib168G0192' => 'dzi', 'Duzib211G0077' => 'dzi', 'Duzib212G0429' => 'dzi', 'Duzib212G0472' => 'dzi', 'ECA233G2617' => 'eca', 'ECA236G4188' => 'eca', 'ECA240G0936' => 'eca', 'ECA240G1129' => 'eca', 'ECA247G0623' => 'eca', 'EL10Ac5g10451' => 'bvu', 'EL10Ac5g10453' => 'bvu', 'EL10Ac5g10894' => 'bvu', 'Eucgr.H00192' => 'egr', 'Eucgr.H00193' => 'egr', 'Eucgr.H00194' => 'egr', 'Eucgr.J01562' => 'egr', 'Eucgr.K03301' => 'egr', 'FAN02G0632' => 'fan', 'FAN05G5378' => 'fan', 'FAN09G3247' => 'fan', 'FAN12G0435' => 'fan', 'FAN12G2426' => 'fan', 'FAN14G1707' => 'fan', 'FAN14G4725' => 'fan', 'FAN15G2071' => 'fan', 'FAN17G3065' => 'fan', 'FAN19G1376' => 'fan', 'FAN20G0354' => 'fan', 'FAN20G2429' => 'fan', 'FAN20G2658' => 'fan', 'FAN24G2343' => 'fan', 'FAN27G2362' => 'fan', 'FAN28G1765' => 'fan', 'FvH4_1g16020' => 'fve', 'FvH4_2g04890' => 'fve', 'FvH4_2g22270' => 'fve', 'FvH4_4g02630' => 'fve', 'FvH4_4g02640' => 'fve', 'FvH4_6g02650' => 'fve', 'Glyma.02G140600' => 'gma', 'Glyma.03G159900' => 'gma', 'Glyma.05G234800' => 'gma', 'Glyma.07G269600' => 'gma', 'Glyma.08G042300' => 'gma', 'Glyma.10G033500' => 'gma', 'Glyma.10G185200' => 'gma', 'Glyma.17G004300' => 'gma', 'Glyma.19G161900' => 'gma', 'Glyma.20G205100' => 'gma', 'Glyma.20G205200' => 'gma', 'Gohir.A01G139101' => 'ghi', 'Gohir.A02G035600' => 'ghi', 'Gohir.A02G117901' => 'ghi', 'Gohir.A07G210100' => 'ghi', 'Gohir.A07G210200' => 'ghi', 'Gohir.A08G061100' => 'ghi', 'Gohir.A09G223000' => 'ghi', 'Gohir.A09G223100' => 'ghi', 'Gohir.A10G113900' => 'ghi', 'Gohir.A10G114000' => 'ghi', 'Gohir.D02G042300' => 'ghi', 'Gohir.D07G216100' => 'ghi', 'Gohir.D07G216200' => 'ghi', 'Gohir.D08G070400' => 'ghi', 'Gohir.D09G225000' => 'ghi', 'Gohir.D09G225100' => 'ghi', 'Gohir.D10G152300' => 'ghi', 'Gohir.D10G153200' => 'ghi', 'Gohir.D11G133701' => 'ghi', 'Gorai.004G074100' => 'gra', 'Gorai.005G046800' => 'gra', 'Gorai.006G246500' => 'gra', 'Gorai.006G246600' => 'gra', 'Gorai.007G142900' => 'gra', 'Gorai.011G171000' => 'gra', 'Gorai.011G171100' => 'gra', 'Gorai.013G104300' => 'gra', 'Gorai.013G104400' => 'gra', 'GSVIVG01000754001' => 'vvi', 'GSVIVG01000756001' => 'vvi', 'GSVIVG01010903001' => 'vvi', 'GSVIVG01017623001' => 'vvi', 'GSVIVG01018113001' => 'vvi', 'GSVIVG01018116001' => 'vvi', 'GSVIVG01018118001' => 'vvi', 'HanXRQChr03g0076211' => 'han', 'HanXRQChr03g0092431' => 'han', 'HanXRQChr03g0092441' => 'han', 'HanXRQChr03g0092591' => 'han', 'HanXRQChr03g0092671' => 'han', 'HanXRQChr03g0092681' => 'han', 'HanXRQChr03g0092691' => 'han', 'HanXRQChr03g0092701' => 'han', 'HanXRQChr03g0092721' => 'han', 'HanXRQChr03g0092731' => 'han', 'HanXRQChr04g0113681' => 'han', 'HanXRQChr10g0281371' => 'han', 'HanXRQChr11g0337141' => 'han', 'HanXRQChr13g0424521' => 'han', 'HanXRQChr13g0424531' => 'han', 'HanXRQChr13g0424541' => 'han', 'HanXRQChr16g0498221' => 'han', 'Haze_04377' => 'cav', 'Haze_11298' => 'cav', 'Haze_24547' => 'cav', 'Haze_24550' => 'cav', 'Haze_26587' => 'cav', 'Hma1.2p1_0650F.1_g195410' => 'hma', 'Hma1.2p1_0893F.1_g233470' => 'hma', 'HPP92_006508' => 'vpl', 'HPP92_024780' => 'vpl', 'Hund02688' => 'sun', 'Hund09380' => 'sun', 'Hund09381' => 'sun', 'Hund09832' => 'sun', 'Hund09833' => 'sun', 'Hund11351' => 'sun', 'Hund11513' => 'sun', 'Lalb_Chr06g0162591' => 'lal', 'Lalb_Chr06g0162601' => 'lal', 'Lalb_Chr06g0169321' => 'lal', 'Lalb_Chr09g0330951' => 'lal', 'Lalb_Chr16g0387631' => 'lal', 'Lalb_Chr21g0306241' => 'lal', 'Lalb_Chr25g0290051' => 'lal', 'Lalb_Chr25g0290061' => 'lal', 'Lalb_Chr25g0290071' => 'lal', 'Lj1g0003876' => 'lja', 'Lj1P1207T36' => 'lonja', 'Lj2C1156G12' => 'lonja', 'Lj3A793G39' => 'lonja', 'Lj3C580G2' => 'lonja', 'Lj3C780G2' => 'lonja', 'Lj3C780T4' => 'lonja', 'Lj3C793G9' => 'lonja', 'Lj4g0012960' => 'lja', 'Lj5g0021252' => 'lja', 'Lj5g0021484' => 'lja', 'Lj5g0024528' => 'lja', 'Lj6A399T12' => 'lonja', 'Lj6A656G65' => 'lonja', 'Lsat_1_v5_gn_3_125500' => 'lsa', 'Lsat_1_v5_gn_3_125540' => 'lsa', 'Lsat_1_v5_gn_5_72701' => 'lsa', 'Lsat_1_v5_gn_8_91560' => 'lsa', 'Lsat_1_v5_gn_9_9640' => 'lsa', 'Manes.01G200600' => 'mes', 'Manes.01G200700' => 'mes', 'Manes.03G168900' => 'mes', 'Manes.03G169000' => 'mes', 'Manes.05G085801' => 'mes', 'Manes.05G086200' => 'mes', 'Manes.15G036700' => 'mes', 'Manes.15G036900' => 'mes', 'Mapoly0004s0172' => 'mpo', 'Mapoly0023s0001' => 'mpo', 'Mapoly0142s0012' => 'mpo', 'MBI01_g32854_MAGBIO' => 'mbi', 'MBI11_g24427_MAGBIO' => 'mbi', 'MBI11_g47319_MAGBIO' => 'mbi', 'MCO01G433' => 'mco', 'MD00G1187800' => 'mdo', 'MD04G1226500' => 'mdo', 'MD05G1203900' => 'mdo', 'MD10G1191100' => 'mdo', 'MD12G1243500' => 'mdo', 'MD13G1207000' => 'mdo', 'MD13G1207100' => 'mdo', 'MD16G1208600' => 'mdo', 'Medtr1g050352' => 'mtr', 'Medtr1g070385' => 'mtr', 'Medtr1g070450' => 'mtr', 'Medtr1g075200' => 'mtr', 'Medtr1g075250' => 'mtr', 'Medtr1g075260' => 'mtr', 'Medtr1g475250' => 'mtr', 'Medtr4g075450' => 'mtr', 'Medtr7g096300' => 'mtr', 'Medtr8g105110' => 'mtr', 'MELO3C006470.2' => 'cme', 'MELO3C006471.2' => 'cme', 'MELO3C020772.2' => 'cme', 'MELO3C026780.2' => 'cme', 'MELO3C026781.2' => 'cme', 'Migut.D00390' => 'egut', 'Migut.G00435' => 'egut', 'Migut.G00436' => 'egut', 'Migut.G00718' => 'egut', 'MSTRG.21891' => 'ama', 'MSTRG.26910' => 'ama', 'MSTRG.4099' => 'ama', 'MSTRG.9925' => 'ama', 'Nitab4.5_0000165g0010' => 'nta', 'Nitab4.5_0000209g0180' => 'nta', 'Nitab4.5_0000244g0440' => 'nta', 'Nitab4.5_0000525g0220' => 'nta', 'Nitab4.5_0001597g0020' => 'nta', 'Nitab4.5_0001878g0040' => 'nta', 'Nitab4.5_0001878g0060' => 'nta', 'Nitab4.5_0002838g0100' => 'nta', 'Nitab4.5_0002838g0120' => 'nta', 'Nitab4.5_0004798g0030' => 'nta', 'Nitab4.5_0005420g0010' => 'nta', 'Nitab4.5_0005507g0010' => 'nta', 'Nitab4.5_0005574g0020' => 'nta', 'Nitab4.5_0005838g0010' => 'nta', 'Nitab4.5_0010580g0020' => 'nta', 'Nn1g02599' => 'nnu', 'Nn1g02608' => 'nnu', 'Nn3g17742' => 'nnu', 'Nn3g19534' => 'nnu', 'Nn3g19535' => 'nnu', 'Oeu008790.1' => 'oeu', 'Oeu008792.1' => 'oeu', 'Oeu032590.1' => 'oeu', 'Oeu035349.1' => 'oeu', 'Oeu049791.1' => 'oeu', 'Os01g0774500' => 'osa', 'Os03g0628800' => 'osa', 'Os03g0798600' => 'osa', 'Os05g0508800' => 'osa', 'Peaxi162Scf00036g02018' => 'pax', 'Peaxi162Scf00578g00032' => 'pax', 'Peaxi162Scf00578g00317' => 'pax', 'Peaxi162Scf00785g00114' => 'pax', 'Peaxi162Scf00813g00119' => 'pax', 'Peaxi162Scf00906g00227' => 'pax', 'PGR004G0875' => 'pgr', 'PGR004G2424' => 'pgr', 'PGR031G1239' => 'pgr', 'PGR031G2474' => 'pgr', 'PGR044G0423' => 'pgr', 'PGSC0003DMG400001128' => 'stu', 'PGSC0003DMG400007336' => 'stu', 'PGSC0003DMG400016318' => 'stu', 'PGSC0003DMG400016319' => 'stu', 'PGSC0003DMG400018074' => 'stu', 'Phvul.001G157700' => 'pvu', 'Phvul.002G148550' => 'pvu', 'Phvul.002G320200' => 'pvu', 'Phvul.003G089200' => 'pvu', 'Phvul.007G126000' => 'pvu', 'Phvul.007G126100' => 'pvu', 'Phvul.007G178000' => 'pvu', 'Phvul.007G178200' => 'pvu', 'Potri.002G043000' => 'ptr', 'Potri.002G043200' => 'ptr', 'Potri.003G123750' => 'ptr', 'Potri.005G055401' => 'ptr', 'Potri.005G219700' => 'ptr', 'Potri.005G220000' => 'ptr', 'Potri.008G161901' => 'ptr', 'Potri.008G162000' => 'ptr', 'Potri.008G162400' => 'ptr', 'Potri.010G076900' => 'ptr', 'Pp3c12_9180' => 'ppa', 'Pp3c13_19770' => 'ppa', 'Pp3c14_22950' => 'ppa', 'Pp3c16_12160' => 'ppa', 'Pp3c27_7820' => 'ppa', 'Pp3c2_3490' => 'ppa', 'Pp3c3_23700' => 'ppa', 'Pp3c3_36520' => 'ppa', 'Pp3c4_15250' => 'ppa', 'PRCOL_00007002' => 'pco', 'Prupe.1G030600' => 'ppe', 'Prupe.1G030700' => 'ppe', 'Prupe.6G345200' => 'ppe', 'Prupe.8G230300' => 'ppe', 'Prupe.8G230500' => 'ppe', 'Psat3g059600' => 'psa', 'Psat5g200920' => 'psa', 'Psat6g056440' => 'psa', 'Psat6g057360' => 'psa', 'Psat6g134120' => 'psa', 'Psat6g134160' => 'psa', 'Psat7g008640' => 'psa', 'Psat7g185240' => 'psa', 'PSO017G1330' => 'pso', 'PSO063G6097' => 'pso', 'PSO170G0835' => 'pso', 'PSO170G2499' => 'pso', 'PSO210G5058' => 'pso', 'PSO210G6154' => 'pso', 'PSO585G0031' => 'pso', 'PSO832G0264' => 'pso', 'PSO832G4288' => 'pso', 'QL03p027355' => 'qlo', 'QL03p027430' => 'qlo', 'QL04p081380' => 'qlo', 'QL06p015642' => 'qlo', 'QL06p015650' => 'qlo', 'QL06p015686' => 'qlo', 'QL12p042927' => 'qlo', 'QL93p1863_0035' => 'qlo', 'RcHm_v2.0_Chr3g0450581' => 'rch', 'RcHm_v2.0_Chr4g0390371' => 'rch', 'RcHm_v2.0_Chr4g0390381' => 'rch', 'RcHm_v2.0_Chr4g0390491' => 'rch', 'RcHm_v2.0_Chr4g0390501' => 'rch', 'RcHm_v2.0_Chr6g0289231' => 'rch', 'Rhsim04G0190400' => 'rsi', 'Rhsim04G0190500' => 'rsi', 'Rhsim04G0190600' => 'rsi', 'Rhsim13G0031400' => 'rsi', 'Rhsim13G0165600' => 'rsi', 'RhsimUnG0114600' => 'rsi', 'RhsimUnG0114700' => 'rsi', 'Sabra02G0034800' => 'sbr', 'Sabra02G0035100' => 'sbr', 'Sabra05G0168600' => 'sbr', 'Sabra05G0168800' => 'sbr', 'Sabra08G0123700' => 'sbr', 'Sabra10G0031900' => 'sbr', 'Sabra13G0039000' => 'sbr', 'SalBow2G0782' => 'sbo', 'SalBow2G1403' => 'sbo', 'SalBow4G0074' => 'sbo', 'SalBow4G2635' => 'sbo', 'SalBow5G3010' => 'sbo', 'Sc05g0000870' => 'sci', 'Sc05g0000890' => 'sci', 'Sc13g0005000' => 'sci', 'Sc13g0005030' => 'sci', 'Sc19g0003790' => 'sci', 'Sc19g0003800' => 'sci', 'Sed0003467' => 'sed', 'Sed0009355' => 'sed', 'Sed0009894' => 'sed', 'Sed0011972' => 'sed', 'Sed0021483' => 'sed', 'Sed0021750' => 'sed', 'Sed0026279' => 'sed', 'SEGI_05312' => 'sgi', 'SEGI_10112' => 'sgi', 'SEGI_15835' => 'sgi', 'SEGI_30386' => 'sgi', 'SEGI_34122' => 'sgi', 'SEGI_35063' => 'sgi', 'SGA_v2.0_scaffold101G29794' => 'sas', 'SGA_v2.0_scaffold1G00573' => 'sas', 'SGA_v2.0_scaffold79G25637' => 'sas', 'SGA_v2.0_scaffold88G27283' => 'sas', 'SGA_v2.0_scaffold88G27285' => 'sas', 'SGA_v2.0_scaffold88G27331' => 'sas', 'SHI09937' => 'shi', 'SMO119G0302' => 'smo', 'SMO137G0231' => 'smo', 'SMO367G1151' => 'smo', 'Solyc02g082000.3' => 'sly', 'Solyc06g031670.3' => 'sly', 'Solyc06g053810.3' => 'sly', 'Solyc07g025457.1' => 'sly', 'Solyc08g059740.1' => 'sly', 'Solyc08g059750.3' => 'sly', 'Solyc09g083370.3' => 'sly', 'Solyc12g038950.3' => 'sly', 'Sopen02g026630' => 'spe', 'Sopen06g018930' => 'spe', 'Sopen06g018940' => 'spe', 'Sopen08g009460' => 'spe', 'Sopen09g032290' => 'spe', 'Sp1g03080' => 'spa', 'Sp1g03090' => 'spa', 'Sp1g05480' => 'spa', 'Sp2g07860' => 'spa', 'Sp2g08430' => 'spa', 'Sp2g08440' => 'spa', 'Sp2g26200' => 'spa', 'Sp4g13170' => 'spa', 'Sp6g33840' => 'spa', 'SpUn1204_0010' => 'spa', 'TAR365G0908' => 'tar', 'TAR381G1270' => 'tar', 'TAR381G1651' => 'tar', 'TAR625G1131' => 'tar', 'TAR633G0962' => 'tar', 'TAR633G1729' => 'tar', 'TAR633G1864' => 'tar', 'TAR636G0221' => 'tar', 'TAR636G0314' => 'tar', 'TAR636G3202' => 'tar', 'THA.LOC104800805' => 'tha', 'THA.LOC104801096' => 'tha', 'THA.LOC104801555' => 'tha', 'THA.LOC104808491' => 'tha', 'THA.LOC104808595' => 'tha', 'THA.LOC104815985' => 'tha', 'THA.LOC104822250' => 'tha', 'THA.LOC104826071' => 'tha', 'Thecc.01G265200' => 'tca', 'Thecc.01G265300' => 'tca', 'Thecc.01G265700' => 'tca', 'Thecc.03G109100' => 'tca', 'Thecc.04G245900' => 'tca', 'Thecc.04G246000' => 'tca', 'Thhalv10003334m.g' => 'esa', 'Thhalv10005508m.g' => 'esa', 'Thhalv10005643m.g' => 'esa', 'Thhalv10007316m.g' => 'esa', 'Thhalv10009006m.g' => 'esa', 'Thhalv10009309m.g' => 'esa', 'Thhalv10014917m.g' => 'esa', 'Thhalv10014919m.g' => 'esa', 'Thhalv10015393m.g' => 'esa', 'Thhalv10016515m.g' => 'esa', 'Thhalv10029242m.g' => 'esa', 'TPR.G16654' => 'tpr', 'TPR.G20589' => 'tpr', 'TPR.G23029' => 'tpr', 'TPR.G27731' => 'tpr', 'TPR.G28889' => 'tpr', 'TPR.G28899' => 'tpr', 'TPR.G30846' => 'tpr', 'TPR.G5452' => 'tpr', 'TPR.G5713' => 'tpr', 'TPR.G9046' => 'tpr', 'TPR.G9061' => 'tpr', 'TWI09G1075' => 'twi', 'TWI12G0806' => 'twi', 'TWI18G0108' => 'twi', 'TWI53G1361' => 'twi', 'TWI73G0185' => 'twi', 'TWI73G0427' => 'twi', 'unitig_37.g12001' => 'ugi', 'unitig_747.g21660' => 'ugi', 'unitig_748.g7232' => 'ugi', 'unitig_748.g7315' => 'ugi', 'unitig_85.g27262' => 'ugi', 'unitig_92.g28220' => 'ugi', 'vmacro02632' => 'vma', 'vmacro08410' => 'vma', 'vmacro08411' => 'vma', 'vmacro15407' => 'vma', 'VMungo0251G3619' => 'vmu', 'VMungo0720G1204' => 'vmu', 'VMungo0720G1918' => 'vmu', 'VMungo0720G2387' => 'vmu', 'VMungo0720G2961' => 'vmu', 'VMungo1215G2154' => 'vmu', 'VMungo1383G2411' => 'vmu', 'Zm00001eb051130' => 'zma', 'Zm00001eb116830' => 'zma', 'Zm00001eb116850' => 'zma', 'Zm00001eb151740' => 'zma', 'Zm00001eb292360' => 'zma', 'Zm00001eb301640' => 'zma' ), 'gf_id' => 'HOM05D000856', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000856' ), 'data_identifier' => 'HOM05D000856', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000856', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p00010' => 'bna', 'A03p04160' => 'bna', 'A03p17160' => 'bna', 'A04p23370' => 'bna', 'A05p14860' => 'bna', 'A08p37020' => 'bna', 'A09p08050' => 'bna', 'A09p66800' => 'bna', 'A09p67940' => 'bna', 'A10p02680' => 'bna', 'A10p05320' => 'bna', 'Aa31LG1G20560' => 'aar', 'Aa31LG1G20610' => 'aar', 'Aa31LG1G7810' => 'aar', 'Aa31LG5G3590' => 'aar', 'Aa31LG5G6140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3819' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4683' => 'aag', 'Actinidia04480' => 'ach', 'Actinidia05466' => 'ach', 'Actinidia08445' => 'ach', 'Actinidia21170' => 'ach', 'Actinidia24812' => 'ach', 'Actinidia24951' => 'ach', 'Actinidia40088' => 'ach', 'Ah.02g111660' => 'amhyb', 'Ah.11g048900' => 'amhyb', 'Ah.11g049910' => 'amhyb', 'AL1G13870' => 'aly', 'AL1G13880' => 'aly', 'AL1G16760' => 'aly', 'AL390U10020' => 'aly', 'AL4G25520' => 'aly', 'AL6G19890' => 'aly', 'AL6G19900' => 'aly', 'AL6G19910' => 'aly', 'AL8G40100' => 'aly', 'Aqoxy2G03562' => 'aox', 'Aqoxy5G00316' => 'aox', 'Aqoxy5G00926' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1628KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1H403S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2FU6SJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.882I6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8YRY2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YN1SN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AF70II' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZA8L1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F916KL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHRD8H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KTZ8QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S22EMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8M29T' => 'arhy', 'AT1G04270' => 'ath', 'AT1G04280' => 'ath', 'AT1G06750' => 'ath', 'AT1G33850' => 'ath', 'AT2G30630' => 'ath', 'AT5G09490' => 'ath', 'AT5G09500' => 'ath', 'AT5G09510' => 'ath', 'AT5G43640' => 'ath', 'AT5G63070' => 'ath', 'ATR0605G315' => 'atr', 'Atru.chr11.175' => 'acertr', 'Atru.chr11.653' => 'acertr', 'Atru.chr3.1616' => 'acertr', 'Atru.chr4.2230' => 'acertr', 'Atru.chr4.2232' => 'acertr', 'Atru.chr5.1598' => 'acertr', 'Atru.chr5.1600' => 'acertr', 'Atru.chr5.2188' => 'acertr', 'AUR62008326' => 'cqu', 'AUR62011922' => 'cqu', 'AUR62011924' => 'cqu', 'AUR62021771' => 'cqu', 'AUR62032237' => 'cqu', 'AUR62032240' => 'cqu', 'BcaB01g05572' => 'bca', 'BcaB02g10337' => 'bca', 'BcaB04g19944' => 'bca', 'BcaB05g21548' => 'bca', 'BcaB05g21549' => 'bca', 'BcaB05g23227' => 'bca', 'BcaB06g26256' => 'bca', 'BcaB06g26257' => 'bca', 'BcaB06g28379' => 'bca', 'BcaC02g11159' => 'bca', 'BcaC03g13258' => 'bca', 'BcaC03g13259' => 'bca', 'BcaC05g24456' => 'bca', 'BcaC05g24457' => 'bca', 'BcaC07g36922' => 'bca', 'BcaC07g36923' => 'bca', 'BcaC07g42050' => 'bca', 'BcaC07g42176' => 'bca', 'BcaC07g42195' => 'bca', 'BcaC07g42196' => 'bca', 'BcaNung06674' => 'bca', 'BolC2t06351H' => 'bol', 'BolC2t06352H' => 'bol', 'BolC3t12993H' => 'bol', 'BolC4t23525H' => 'bol', 'BolC4t27475H' => 'bol', 'BolC5t29025H' => 'bol', 'BolC5t29026H' => 'bol', 'BolC8t46898H' => 'bol', 'BolC8t46899H' => 'bol', 'BolC8t52630H' => 'bol', 'BolC8t52765H' => 'bol', 'BolC9t53824H' => 'bol', 'BraA03t09760Z' => 'bra', 'BraA03t10990Z' => 'bra', 'BraA05t20413Z' => 'bra', 'BraA08t35602Z' => 'bra', 'BraA09t36458Z' => 'bra', 'BraA09t42018Z' => 'bra', 'BraA09t42129Z' => 'bra', 'BraA10t42536Z' => 'bra', 'BraA10t42537Z' => 'bra', 'C01p10690' => 'bna', 'C02p03890' => 'bna', 'C02p03900' => 'bna', 'C03p04620' => 'bna', 'C04p19870' => 'bna', 'C04p59670' => 'bna', 'C05p02460' => 'bna', 'C05p02470' => 'bna', 'C08p00980' => 'bna', 'C08p00990' => 'bna', 'C08p51030' => 'bna', 'C08p52360' => 'bna', 'C09p09120' => 'bna', 'CAN.G19.15' => 'can', 'CAN.G251.10' => 'can', 'CAN.G251.9' => 'can', 'CAN.G398.24' => 'can', 'CAN.G410.32' => 'can', 'CAN.G881.2' => 'can', 'CANSAT01G3025' => 'cansat', 'CANSAT78G1211' => 'cansat', 'CANSAT78G1218' => 'cansat', 'CANSAT78G1521' => 'cansat', 'CANSAT78G1670' => 'cansat', 'CARHR003600' => 'chi', 'CARHR003610' => 'chi', 'CARHR006290' => 'chi', 'CARHR006430' => 'chi', 'CARHR124110' => 'chi', 'CARHR203870' => 'chi', 'CARHR203880' => 'chi', 'CARHR203890' => 'chi', 'CARHR276880' => 'chi', 'Carub.0001s0346' => 'cru', 'Carub.0001s0347' => 'cru', 'Carub.0001s0607' => 'cru', 'Carub.0003s2768' => 'cru', 'Carub.0003s2769' => 'cru', 'Carub.0004s1178' => 'cru', 'Carub.0006s0806' => 'cru', 'Carub.0006s0807' => 'cru', 'Carub.0006s0808' => 'cru', 'Carub.0008s0501' => 'cru', 'Carub.0008s2379' => 'cru', 'Ca_08655_v3' => 'car', 'Ca_08922_v3' => 'car', 'Ca_08923_v3' => 'car', 'Ca_09119_v3' => 'car', 'Ca_09703_v3' => 'car', 'Ca_09705_v3' => 'car', 'Ca_09835_v3' => 'car', 'Ca_26403_v3' => 'car', 'Ca_30719_v3' => 'car', 'CBR_g17958' => 'cbr', 'CBR_g40516' => 'cbr', 'Cc00_g05350' => 'ccan', 'Cc01_g18690' => 'ccan', 'Cc03_g04830' => 'ccan', 'Cc03_g04850' => 'ccan', 'CDE02G4469' => 'cde', 'CDE06G0883' => 'cde', 'CDE06G1295' => 'cde', 'CDE06G1390' => 'cde', 'CDE07G0584' => 'cde', 'CDE07G1084' => 'cde', 'CDE08G1259' => 'cde', 'Cfa002341' => 'cfa', 'Cfa024337' => 'cfa', 'Ciclev10004749m.g' => 'ccl', 'Ciclev10006127m.g' => 'ccl', 'Ciclev10019720m.g' => 'ccl', 'Ciclev10022652m.g' => 'ccl', 'CiPaw.01G190400' => 'cil', 'CiPaw.01G190500' => 'cil', 'CiPaw.02G116400' => 'cil', 'CiPaw.02G116500' => 'cil', 'CiPaw.04G183000' => 'cil', 'CiPaw.04G183300' => 'cil', 'ClCG05G004610' => 'cla', 'ClCG05G004620' => 'cla', 'ClCG06G006730' => 'cla', 'ClCG06G006740' => 'cla', 'ClCG11G003690' => 'cla', 'COL.COLO4_08276' => 'col', 'COL.COLO4_08277' => 'col', 'COL.COLO4_15787' => 'col', 'COL.COLO4_15789' => 'col', 'Cpa.g.c44815' => 'cpa', 'Cpa.g.sc52.144' => 'cpa', 'Cpa.g.sc58.46' => 'cpa', 'Cpa.g.sc58.47' => 'cpa', 'Cre08.g360900' => 'cre', 'CsaV3_2G013030' => 'csa', 'CsaV3_2G013050' => 'csa', 'CsaV3_2G015620' => 'csa', 'CsaV3_3G012590' => 'csa', 'CsaV3_3G012600' => 'csa', 'CSS0001641' => 'camsi', 'CSS0008310' => 'camsi', 'CSS0013011' => 'camsi', 'CSS0017147' => 'camsi', 'CSS0022970' => 'camsi', 'CSS0025655' => 'camsi', 'CSS0028665' => 'camsi', 'CSS0029117' => 'camsi', 'CSS0032024' => 'camsi', 'CSS0039681' => 'camsi', 'CSS0046516' => 'camsi', 'CSS0050307' => 'camsi', 'DCAR_005871' => 'dca', 'DCAR_007342' => 'dca', 'DCAR_024228' => 'dca', 'DCAR_027277' => 'dca', 'DCAR_030718' => 'dca', 'Dinv20287' => 'din', 'Dinv22461' => 'din', 'Dinv22464' => 'din', 'Dinv29912' => 'din', 'Dinv29913' => 'din', 'Dinv34580' => 'din', 'Dinv34582' => 'din', 'Dinv44632' => 'din', 'Duzib052G0266' => 'dzi', 'Duzib133G0907' => 'dzi', 'Duzib133G1034' => 'dzi', 'Duzib138G0207' => 'dzi', 'Duzib138G0491' => 'dzi', 'Duzib151G0812' => 'dzi', 'Duzib151G1166' => 'dzi', 'Duzib168G0192' => 'dzi', 'Duzib211G0077' => 'dzi', 'Duzib212G0429' => 'dzi', 'Duzib212G0472' => 'dzi', 'ECA233G2617' => 'eca', 'ECA236G4188' => 'eca', 'ECA240G0936' => 'eca', 'ECA240G1129' => 'eca', 'ECA247G0623' => 'eca', 'EL10Ac5g10451' => 'bvu', 'EL10Ac5g10453' => 'bvu', 'EL10Ac5g10894' => 'bvu', 'Eucgr.H00192' => 'egr', 'Eucgr.H00193' => 'egr', 'Eucgr.H00194' => 'egr', 'Eucgr.J01562' => 'egr', 'Eucgr.K03301' => 'egr', 'FAN02G0632' => 'fan', 'FAN05G5378' => 'fan', 'FAN09G3247' => 'fan', 'FAN12G0435' => 'fan', 'FAN12G2426' => 'fan', 'FAN14G1707' => 'fan', 'FAN14G4725' => 'fan', 'FAN15G2071' => 'fan', 'FAN17G3065' => 'fan', 'FAN19G1376' => 'fan', 'FAN20G0354' => 'fan', 'FAN20G2429' => 'fan', 'FAN20G2658' => 'fan', 'FAN24G2343' => 'fan', 'FAN27G2362' => 'fan', 'FAN28G1765' => 'fan', 'FvH4_1g16020' => 'fve', 'FvH4_2g04890' => 'fve', 'FvH4_2g22270' => 'fve', 'FvH4_4g02630' => 'fve', 'FvH4_4g02640' => 'fve', 'FvH4_6g02650' => 'fve', 'Glyma.02G140600' => 'gma', 'Glyma.03G159900' => 'gma', 'Glyma.05G234800' => 'gma', 'Glyma.07G269600' => 'gma', 'Glyma.08G042300' => 'gma', 'Glyma.10G033500' => 'gma', 'Glyma.10G185200' => 'gma', 'Glyma.17G004300' => 'gma', 'Glyma.19G161900' => 'gma', 'Glyma.20G205100' => 'gma', 'Glyma.20G205200' => 'gma', 'Gohir.A01G139101' => 'ghi', 'Gohir.A02G035600' => 'ghi', 'Gohir.A02G117901' => 'ghi', 'Gohir.A07G210100' => 'ghi', 'Gohir.A07G210200' => 'ghi', 'Gohir.A08G061100' => 'ghi', 'Gohir.A09G223000' => 'ghi', 'Gohir.A09G223100' => 'ghi', 'Gohir.A10G113900' => 'ghi', 'Gohir.A10G114000' => 'ghi', 'Gohir.D02G042300' => 'ghi', 'Gohir.D07G216100' => 'ghi', 'Gohir.D07G216200' => 'ghi', 'Gohir.D08G070400' => 'ghi', 'Gohir.D09G225000' => 'ghi', 'Gohir.D09G225100' => 'ghi', 'Gohir.D10G152300' => 'ghi', 'Gohir.D10G153200' => 'ghi', 'Gohir.D11G133701' => 'ghi', 'Gorai.004G074100' => 'gra', 'Gorai.005G046800' => 'gra', 'Gorai.006G246500' => 'gra', 'Gorai.006G246600' => 'gra', 'Gorai.007G142900' => 'gra', 'Gorai.011G171000' => 'gra', 'Gorai.011G171100' => 'gra', 'Gorai.013G104300' => 'gra', 'Gorai.013G104400' => 'gra', 'GSVIVG01000754001' => 'vvi', 'GSVIVG01000756001' => 'vvi', 'GSVIVG01010903001' => 'vvi', 'GSVIVG01017623001' => 'vvi', 'GSVIVG01018113001' => 'vvi', 'GSVIVG01018116001' => 'vvi', 'GSVIVG01018118001' => 'vvi', 'HanXRQChr03g0076211' => 'han', 'HanXRQChr03g0092431' => 'han', 'HanXRQChr03g0092441' => 'han', 'HanXRQChr03g0092591' => 'han', 'HanXRQChr03g0092671' => 'han', 'HanXRQChr03g0092681' => 'han', 'HanXRQChr03g0092691' => 'han', 'HanXRQChr03g0092701' => 'han', 'HanXRQChr03g0092721' => 'han', 'HanXRQChr03g0092731' => 'han', 'HanXRQChr04g0113681' => 'han', 'HanXRQChr10g0281371' => 'han', 'HanXRQChr11g0337141' => 'han', 'HanXRQChr13g0424521' => 'han', 'HanXRQChr13g0424531' => 'han', 'HanXRQChr13g0424541' => 'han', 'HanXRQChr16g0498221' => 'han', 'Haze_04377' => 'cav', 'Haze_11298' => 'cav', 'Haze_24547' => 'cav', 'Haze_24550' => 'cav', 'Haze_26587' => 'cav', 'Hma1.2p1_0650F.1_g195410' => 'hma', 'Hma1.2p1_0893F.1_g233470' => 'hma', 'HPP92_006508' => 'vpl', 'HPP92_024780' => 'vpl', 'Hund02688' => 'sun', 'Hund09380' => 'sun', 'Hund09381' => 'sun', 'Hund09832' => 'sun', 'Hund09833' => 'sun', 'Hund11351' => 'sun', 'Hund11513' => 'sun', 'Lalb_Chr06g0162591' => 'lal', 'Lalb_Chr06g0162601' => 'lal', 'Lalb_Chr06g0169321' => 'lal', 'Lalb_Chr09g0330951' => 'lal', 'Lalb_Chr16g0387631' => 'lal', 'Lalb_Chr21g0306241' => 'lal', 'Lalb_Chr25g0290051' => 'lal', 'Lalb_Chr25g0290061' => 'lal', 'Lalb_Chr25g0290071' => 'lal', 'Lj1g0003876' => 'lja', 'Lj1P1207T36' => 'lonja', 'Lj2C1156G12' => 'lonja', 'Lj3A793G39' => 'lonja', 'Lj3C580G2' => 'lonja', 'Lj3C780G2' => 'lonja', 'Lj3C780T4' => 'lonja', 'Lj3C793G9' => 'lonja', 'Lj4g0012960' => 'lja', 'Lj5g0021252' => 'lja', 'Lj5g0021484' => 'lja', 'Lj5g0024528' => 'lja', 'Lj6A399T12' => 'lonja', 'Lj6A656G65' => 'lonja', 'Lsat_1_v5_gn_3_125500' => 'lsa', 'Lsat_1_v5_gn_3_125540' => 'lsa', 'Lsat_1_v5_gn_5_72701' => 'lsa', 'Lsat_1_v5_gn_8_91560' => 'lsa', 'Lsat_1_v5_gn_9_9640' => 'lsa', 'Manes.01G200600' => 'mes', 'Manes.01G200700' => 'mes', 'Manes.03G168900' => 'mes', 'Manes.03G169000' => 'mes', 'Manes.05G085801' => 'mes', 'Manes.05G086200' => 'mes', 'Manes.15G036700' => 'mes', 'Manes.15G036900' => 'mes', 'Mapoly0004s0172' => 'mpo', 'Mapoly0023s0001' => 'mpo', 'Mapoly0142s0012' => 'mpo', 'MBI01_g32854_MAGBIO' => 'mbi', 'MBI11_g24427_MAGBIO' => 'mbi', 'MBI11_g47319_MAGBIO' => 'mbi', 'MCO01G433' => 'mco', 'MD00G1187800' => 'mdo', 'MD04G1226500' => 'mdo', 'MD05G1203900' => 'mdo', 'MD10G1191100' => 'mdo', 'MD12G1243500' => 'mdo', 'MD13G1207000' => 'mdo', 'MD13G1207100' => 'mdo', 'MD16G1208600' => 'mdo', 'Medtr1g050352' => 'mtr', 'Medtr1g070385' => 'mtr', 'Medtr1g070450' => 'mtr', 'Medtr1g075200' => 'mtr', 'Medtr1g075250' => 'mtr', 'Medtr1g075260' => 'mtr', 'Medtr1g475250' => 'mtr', 'Medtr4g075450' => 'mtr', 'Medtr7g096300' => 'mtr', 'Medtr8g105110' => 'mtr', 'MELO3C006470.2' => 'cme', 'MELO3C006471.2' => 'cme', 'MELO3C020772.2' => 'cme', 'MELO3C026780.2' => 'cme', 'MELO3C026781.2' => 'cme', 'Migut.D00390' => 'egut', 'Migut.G00435' => 'egut', 'Migut.G00436' => 'egut', 'Migut.G00718' => 'egut', 'MSTRG.21891' => 'ama', 'MSTRG.26910' => 'ama', 'MSTRG.4099' => 'ama', 'MSTRG.9925' => 'ama', 'Nitab4.5_0000165g0010' => 'nta', 'Nitab4.5_0000209g0180' => 'nta', 'Nitab4.5_0000244g0440' => 'nta', 'Nitab4.5_0000525g0220' => 'nta', 'Nitab4.5_0001597g0020' => 'nta', 'Nitab4.5_0001878g0040' => 'nta', 'Nitab4.5_0001878g0060' => 'nta', 'Nitab4.5_0002838g0100' => 'nta', 'Nitab4.5_0002838g0120' => 'nta', 'Nitab4.5_0004798g0030' => 'nta', 'Nitab4.5_0005420g0010' => 'nta', 'Nitab4.5_0005507g0010' => 'nta', 'Nitab4.5_0005574g0020' => 'nta', 'Nitab4.5_0005838g0010' => 'nta', 'Nitab4.5_0010580g0020' => 'nta', 'Nn1g02599' => 'nnu', 'Nn1g02608' => 'nnu', 'Nn3g17742' => 'nnu', 'Nn3g19534' => 'nnu', 'Nn3g19535' => 'nnu', 'Oeu008790.1' => 'oeu', 'Oeu008792.1' => 'oeu', 'Oeu032590.1' => 'oeu', 'Oeu035349.1' => 'oeu', 'Oeu049791.1' => 'oeu', 'Os01g0774500' => 'osa', 'Os03g0628800' => 'osa', 'Os03g0798600' => 'osa', 'Os05g0508800' => 'osa', 'Peaxi162Scf00036g02018' => 'pax', 'Peaxi162Scf00578g00032' => 'pax', 'Peaxi162Scf00578g00317' => 'pax', 'Peaxi162Scf00785g00114' => 'pax', 'Peaxi162Scf00813g00119' => 'pax', 'Peaxi162Scf00906g00227' => 'pax', 'PGR004G0875' => 'pgr', 'PGR004G2424' => 'pgr', 'PGR031G1239' => 'pgr', 'PGR031G2474' => 'pgr', 'PGR044G0423' => 'pgr', 'PGSC0003DMG400001128' => 'stu', 'PGSC0003DMG400007336' => 'stu', 'PGSC0003DMG400016318' => 'stu', 'PGSC0003DMG400016319' => 'stu', 'PGSC0003DMG400018074' => 'stu', 'Phvul.001G157700' => 'pvu', 'Phvul.002G148550' => 'pvu', 'Phvul.002G320200' => 'pvu', 'Phvul.003G089200' => 'pvu', 'Phvul.007G126000' => 'pvu', 'Phvul.007G126100' => 'pvu', 'Phvul.007G178000' => 'pvu', 'Phvul.007G178200' => 'pvu', 'Potri.002G043000' => 'ptr', 'Potri.002G043200' => 'ptr', 'Potri.003G123750' => 'ptr', 'Potri.005G055401' => 'ptr', 'Potri.005G219700' => 'ptr', 'Potri.005G220000' => 'ptr', 'Potri.008G161901' => 'ptr', 'Potri.008G162000' => 'ptr', 'Potri.008G162400' => 'ptr', 'Potri.010G076900' => 'ptr', 'Pp3c12_9180' => 'ppa', 'Pp3c13_19770' => 'ppa', 'Pp3c14_22950' => 'ppa', 'Pp3c16_12160' => 'ppa', 'Pp3c27_7820' => 'ppa', 'Pp3c2_3490' => 'ppa', 'Pp3c3_23700' => 'ppa', 'Pp3c3_36520' => 'ppa', 'Pp3c4_15250' => 'ppa', 'PRCOL_00007002' => 'pco', 'Prupe.1G030600' => 'ppe', 'Prupe.1G030700' => 'ppe', 'Prupe.6G345200' => 'ppe', 'Prupe.8G230300' => 'ppe', 'Prupe.8G230500' => 'ppe', 'Psat3g059600' => 'psa', 'Psat5g200920' => 'psa', 'Psat6g056440' => 'psa', 'Psat6g057360' => 'psa', 'Psat6g134120' => 'psa', 'Psat6g134160' => 'psa', 'Psat7g008640' => 'psa', 'Psat7g185240' => 'psa', 'PSO017G1330' => 'pso', 'PSO063G6097' => 'pso', 'PSO170G0835' => 'pso', 'PSO170G2499' => 'pso', 'PSO210G5058' => 'pso', 'PSO210G6154' => 'pso', 'PSO585G0031' => 'pso', 'PSO832G0264' => 'pso', 'PSO832G4288' => 'pso', 'QL03p027355' => 'qlo', 'QL03p027430' => 'qlo', 'QL04p081380' => 'qlo', 'QL06p015642' => 'qlo', 'QL06p015650' => 'qlo', 'QL06p015686' => 'qlo', 'QL12p042927' => 'qlo', 'QL93p1863_0035' => 'qlo', 'RcHm_v2.0_Chr3g0450581' => 'rch', 'RcHm_v2.0_Chr4g0390371' => 'rch', 'RcHm_v2.0_Chr4g0390381' => 'rch', 'RcHm_v2.0_Chr4g0390491' => 'rch', 'RcHm_v2.0_Chr4g0390501' => 'rch', 'RcHm_v2.0_Chr6g0289231' => 'rch', 'Rhsim04G0190400' => 'rsi', 'Rhsim04G0190500' => 'rsi', 'Rhsim04G0190600' => 'rsi', 'Rhsim13G0031400' => 'rsi', 'Rhsim13G0165600' => 'rsi', 'RhsimUnG0114600' => 'rsi', 'RhsimUnG0114700' => 'rsi', 'Sabra02G0034800' => 'sbr', 'Sabra02G0035100' => 'sbr', 'Sabra05G0168600' => 'sbr', 'Sabra05G0168800' => 'sbr', 'Sabra08G0123700' => 'sbr', 'Sabra10G0031900' => 'sbr', 'Sabra13G0039000' => 'sbr', 'SalBow2G0782' => 'sbo', 'SalBow2G1403' => 'sbo', 'SalBow4G0074' => 'sbo', 'SalBow4G2635' => 'sbo', 'SalBow5G3010' => 'sbo', 'Sc05g0000870' => 'sci', 'Sc05g0000890' => 'sci', 'Sc13g0005000' => 'sci', 'Sc13g0005030' => 'sci', 'Sc19g0003790' => 'sci', 'Sc19g0003800' => 'sci', 'Sed0003467' => 'sed', 'Sed0009355' => 'sed', 'Sed0009894' => 'sed', 'Sed0011972' => 'sed', 'Sed0021483' => 'sed', 'Sed0021750' => 'sed', 'Sed0026279' => 'sed', 'SEGI_05312' => 'sgi', 'SEGI_10112' => 'sgi', 'SEGI_15835' => 'sgi', 'SEGI_30386' => 'sgi', 'SEGI_34122' => 'sgi', 'SEGI_35063' => 'sgi', 'SGA_v2.0_scaffold101G29794' => 'sas', 'SGA_v2.0_scaffold1G00573' => 'sas', 'SGA_v2.0_scaffold79G25637' => 'sas', 'SGA_v2.0_scaffold88G27283' => 'sas', 'SGA_v2.0_scaffold88G27285' => 'sas', 'SGA_v2.0_scaffold88G27331' => 'sas', 'SHI09937' => 'shi', 'SMO119G0302' => 'smo', 'SMO137G0231' => 'smo', 'SMO367G1151' => 'smo', 'Solyc02g082000.3' => 'sly', 'Solyc06g031670.3' => 'sly', 'Solyc06g053810.3' => 'sly', 'Solyc07g025457.1' => 'sly', 'Solyc08g059740.1' => 'sly', 'Solyc08g059750.3' => 'sly', 'Solyc09g083370.3' => 'sly', 'Solyc12g038950.3' => 'sly', 'Sopen02g026630' => 'spe', 'Sopen06g018930' => 'spe', 'Sopen06g018940' => 'spe', 'Sopen08g009460' => 'spe', 'Sopen09g032290' => 'spe', 'Sp1g03080' => 'spa', 'Sp1g03090' => 'spa', 'Sp1g05480' => 'spa', 'Sp2g07860' => 'spa', 'Sp2g08430' => 'spa', 'Sp2g08440' => 'spa', 'Sp2g26200' => 'spa', 'Sp4g13170' => 'spa', 'Sp6g33840' => 'spa', 'SpUn1204_0010' => 'spa', 'TAR365G0908' => 'tar', 'TAR381G1270' => 'tar', 'TAR381G1651' => 'tar', 'TAR625G1131' => 'tar', 'TAR633G0962' => 'tar', 'TAR633G1729' => 'tar', 'TAR633G1864' => 'tar', 'TAR636G0221' => 'tar', 'TAR636G0314' => 'tar', 'TAR636G3202' => 'tar', 'THA.LOC104800805' => 'tha', 'THA.LOC104801096' => 'tha', 'THA.LOC104801555' => 'tha', 'THA.LOC104808491' => 'tha', 'THA.LOC104808595' => 'tha', 'THA.LOC104815985' => 'tha', 'THA.LOC104822250' => 'tha', 'THA.LOC104826071' => 'tha', 'Thecc.01G265200' => 'tca', 'Thecc.01G265300' => 'tca', 'Thecc.01G265700' => 'tca', 'Thecc.03G109100' => 'tca', 'Thecc.04G245900' => 'tca', 'Thecc.04G246000' => 'tca', 'Thhalv10003334m.g' => 'esa', 'Thhalv10005508m.g' => 'esa', 'Thhalv10005643m.g' => 'esa', 'Thhalv10007316m.g' => 'esa', 'Thhalv10009006m.g' => 'esa', 'Thhalv10009309m.g' => 'esa', 'Thhalv10014917m.g' => 'esa', 'Thhalv10014919m.g' => 'esa', 'Thhalv10015393m.g' => 'esa', 'Thhalv10016515m.g' => 'esa', 'Thhalv10029242m.g' => 'esa', 'TPR.G16654' => 'tpr', 'TPR.G20589' => 'tpr', 'TPR.G23029' => 'tpr', 'TPR.G27731' => 'tpr', 'TPR.G28889' => 'tpr', 'TPR.G28899' => 'tpr', 'TPR.G30846' => 'tpr', 'TPR.G5452' => 'tpr', 'TPR.G5713' => 'tpr', 'TPR.G9046' => 'tpr', 'TPR.G9061' => 'tpr', 'TWI09G1075' => 'twi', 'TWI12G0806' => 'twi', 'TWI18G0108' => 'twi', 'TWI53G1361' => 'twi', 'TWI73G0185' => 'twi', 'TWI73G0427' => 'twi', 'unitig_37.g12001' => 'ugi', 'unitig_747.g21660' => 'ugi', 'unitig_748.g7232' => 'ugi', 'unitig_748.g7315' => 'ugi', 'unitig_85.g27262' => 'ugi', 'unitig_92.g28220' => 'ugi', 'vmacro02632' => 'vma', 'vmacro08410' => 'vma', 'vmacro08411' => 'vma', 'vmacro15407' => 'vma', 'VMungo0251G3619' => 'vmu', 'VMungo0720G1204' => 'vmu', 'VMungo0720G1918' => 'vmu', 'VMungo0720G2387' => 'vmu', 'VMungo0720G2961' => 'vmu', 'VMungo1215G2154' => 'vmu', 'VMungo1383G2411' => 'vmu', 'Zm00001eb051130' => 'zma', 'Zm00001eb116830' => 'zma', 'Zm00001eb116850' => 'zma', 'Zm00001eb151740' => 'zma', 'Zm00001eb292360' => 'zma', 'Zm00001eb301640' => 'zma' ) $gf_id = 'HOM05D000856' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000856' ) $data_identifier = 'HOM05D000856' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 13, 'ath' => (int) 10, 'atr' => (int) 1, 'acertr' => (int) 8, 'cqu' => (int) 6, 'bca' => (int) 21, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 11, 'car' => (int) 9, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 8, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 5, 'fan' => (int) 16, 'fve' => (int) 6, 'gma' => (int) 11, 'ghi' => (int) 19, 'gra' => (int) 9, 'vvi' => (int) 7, 'han' => (int) 17, 'cav' => (int) 5, 'hma' => (int) 2, 'vpl' => (int) 2, 'sun' => (int) 7, 'lal' => (int) 9, 'lja' => (int) 5, 'lonja' => (int) 9, 'lsa' => (int) 5, 'mes' => (int) 8, 'mpo' => (int) 3, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 10, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 15, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 9, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 9, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 6, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 5, 'spa' => (int) 10, 'tar' => (int) 10, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 11, 'tpr' => (int) 11, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 4, 'vmu' => (int) 7, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb301640' $species_info = array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ) $local_species = 'bca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000856', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p00010' => 'bna', 'A03p04160' => 'bna', 'A03p17160' => 'bna', 'A04p23370' => 'bna', 'A05p14860' => 'bna', 'A08p37020' => 'bna', 'A09p08050' => 'bna', 'A09p66800' => 'bna', 'A09p67940' => 'bna', 'A10p02680' => 'bna', 'A10p05320' => 'bna', 'Aa31LG1G20560' => 'aar', 'Aa31LG1G20610' => 'aar', 'Aa31LG1G7810' => 'aar', 'Aa31LG5G3590' => 'aar', 'Aa31LG5G6140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3819' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4683' => 'aag', 'Actinidia04480' => 'ach', 'Actinidia05466' => 'ach', 'Actinidia08445' => 'ach', 'Actinidia21170' => 'ach', 'Actinidia24812' => 'ach', 'Actinidia24951' => 'ach', 'Actinidia40088' => 'ach', 'Ah.02g111660' => 'amhyb', 'Ah.11g048900' => 'amhyb', 'Ah.11g049910' => 'amhyb', 'AL1G13870' => 'aly', 'AL1G13880' => 'aly', 'AL1G16760' => 'aly', 'AL390U10020' => 'aly', 'AL4G25520' => 'aly', 'AL6G19890' => 'aly', 'AL6G19900' => 'aly', 'AL6G19910' => 'aly', 'AL8G40100' => 'aly', 'Aqoxy2G03562' => 'aox', 'Aqoxy5G00316' => 'aox', 'Aqoxy5G00926' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1628KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1H403S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2FU6SJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.882I6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8YRY2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YN1SN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AF70II' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZA8L1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F916KL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHRD8H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KTZ8QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S22EMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8M29T' => 'arhy', 'AT1G04270' => 'ath', 'AT1G04280' => 'ath', 'AT1G06750' => 'ath', 'AT1G33850' => 'ath', 'AT2G30630' => 'ath', 'AT5G09490' => 'ath', 'AT5G09500' => 'ath', 'AT5G09510' => 'ath', 'AT5G43640' => 'ath', 'AT5G63070' => 'ath', 'ATR0605G315' => 'atr', 'Atru.chr11.175' => 'acertr', 'Atru.chr11.653' => 'acertr', 'Atru.chr3.1616' => 'acertr', 'Atru.chr4.2230' => 'acertr', 'Atru.chr4.2232' => 'acertr', 'Atru.chr5.1598' => 'acertr', 'Atru.chr5.1600' => 'acertr', 'Atru.chr5.2188' => 'acertr', 'AUR62008326' => 'cqu', 'AUR62011922' => 'cqu', 'AUR62011924' => 'cqu', 'AUR62021771' => 'cqu', 'AUR62032237' => 'cqu', 'AUR62032240' => 'cqu', 'BcaB01g05572' => 'bca', 'BcaB02g10337' => 'bca', 'BcaB04g19944' => 'bca', 'BcaB05g21548' => 'bca', 'BcaB05g21549' => 'bca', 'BcaB05g23227' => 'bca', 'BcaB06g26256' => 'bca', 'BcaB06g26257' => 'bca', 'BcaB06g28379' => 'bca', 'BcaC02g11159' => 'bca', 'BcaC03g13258' => 'bca', 'BcaC03g13259' => 'bca', 'BcaC05g24456' => 'bca', 'BcaC05g24457' => 'bca', 'BcaC07g36922' => 'bca', 'BcaC07g36923' => 'bca', 'BcaC07g42050' => 'bca', 'BcaC07g42176' => 'bca', 'BcaC07g42195' => 'bca', 'BcaC07g42196' => 'bca', 'BcaNung06674' => 'bca', 'BolC2t06351H' => 'bol', 'BolC2t06352H' => 'bol', 'BolC3t12993H' => 'bol', 'BolC4t23525H' => 'bol', 'BolC4t27475H' => 'bol', 'BolC5t29025H' => 'bol', 'BolC5t29026H' => 'bol', 'BolC8t46898H' => 'bol', 'BolC8t46899H' => 'bol', 'BolC8t52630H' => 'bol', 'BolC8t52765H' => 'bol', 'BolC9t53824H' => 'bol', 'BraA03t09760Z' => 'bra', 'BraA03t10990Z' => 'bra', 'BraA05t20413Z' => 'bra', 'BraA08t35602Z' => 'bra', 'BraA09t36458Z' => 'bra', 'BraA09t42018Z' => 'bra', 'BraA09t42129Z' => 'bra', 'BraA10t42536Z' => 'bra', 'BraA10t42537Z' => 'bra', 'C01p10690' => 'bna', 'C02p03890' => 'bna', 'C02p03900' => 'bna', 'C03p04620' => 'bna', 'C04p19870' => 'bna', 'C04p59670' => 'bna', 'C05p02460' => 'bna', 'C05p02470' => 'bna', 'C08p00980' => 'bna', 'C08p00990' => 'bna', 'C08p51030' => 'bna', 'C08p52360' => 'bna', 'C09p09120' => 'bna', 'CAN.G19.15' => 'can', 'CAN.G251.10' => 'can', 'CAN.G251.9' => 'can', 'CAN.G398.24' => 'can', 'CAN.G410.32' => 'can', 'CAN.G881.2' => 'can', 'CANSAT01G3025' => 'cansat', 'CANSAT78G1211' => 'cansat', 'CANSAT78G1218' => 'cansat', 'CANSAT78G1521' => 'cansat', 'CANSAT78G1670' => 'cansat', 'CARHR003600' => 'chi', 'CARHR003610' => 'chi', 'CARHR006290' => 'chi', 'CARHR006430' => 'chi', 'CARHR124110' => 'chi', 'CARHR203870' => 'chi', 'CARHR203880' => 'chi', 'CARHR203890' => 'chi', 'CARHR276880' => 'chi', 'Carub.0001s0346' => 'cru', 'Carub.0001s0347' => 'cru', 'Carub.0001s0607' => 'cru', 'Carub.0003s2768' => 'cru', 'Carub.0003s2769' => 'cru', 'Carub.0004s1178' => 'cru', 'Carub.0006s0806' => 'cru', 'Carub.0006s0807' => 'cru', 'Carub.0006s0808' => 'cru', 'Carub.0008s0501' => 'cru', 'Carub.0008s2379' => 'cru', 'Ca_08655_v3' => 'car', 'Ca_08922_v3' => 'car', 'Ca_08923_v3' => 'car', 'Ca_09119_v3' => 'car', 'Ca_09703_v3' => 'car', 'Ca_09705_v3' => 'car', 'Ca_09835_v3' => 'car', 'Ca_26403_v3' => 'car', 'Ca_30719_v3' => 'car', 'CBR_g17958' => 'cbr', 'CBR_g40516' => 'cbr', 'Cc00_g05350' => 'ccan', 'Cc01_g18690' => 'ccan', 'Cc03_g04830' => 'ccan', 'Cc03_g04850' => 'ccan', 'CDE02G4469' => 'cde', 'CDE06G0883' => 'cde', 'CDE06G1295' => 'cde', 'CDE06G1390' => 'cde', 'CDE07G0584' => 'cde', 'CDE07G1084' => 'cde', 'CDE08G1259' => 'cde', 'Cfa002341' => 'cfa', 'Cfa024337' => 'cfa', 'Ciclev10004749m.g' => 'ccl', 'Ciclev10006127m.g' => 'ccl', 'Ciclev10019720m.g' => 'ccl', 'Ciclev10022652m.g' => 'ccl', 'CiPaw.01G190400' => 'cil', 'CiPaw.01G190500' => 'cil', 'CiPaw.02G116400' => 'cil', 'CiPaw.02G116500' => 'cil', 'CiPaw.04G183000' => 'cil', 'CiPaw.04G183300' => 'cil', 'ClCG05G004610' => 'cla', 'ClCG05G004620' => 'cla', 'ClCG06G006730' => 'cla', 'ClCG06G006740' => 'cla', 'ClCG11G003690' => 'cla', 'COL.COLO4_08276' => 'col', 'COL.COLO4_08277' => 'col', 'COL.COLO4_15787' => 'col', 'COL.COLO4_15789' => 'col', 'Cpa.g.c44815' => 'cpa', 'Cpa.g.sc52.144' => 'cpa', 'Cpa.g.sc58.46' => 'cpa', 'Cpa.g.sc58.47' => 'cpa', 'Cre08.g360900' => 'cre', 'CsaV3_2G013030' => 'csa', 'CsaV3_2G013050' => 'csa', 'CsaV3_2G015620' => 'csa', 'CsaV3_3G012590' => 'csa', 'CsaV3_3G012600' => 'csa', 'CSS0001641' => 'camsi', 'CSS0008310' => 'camsi', 'CSS0013011' => 'camsi', 'CSS0017147' => 'camsi', 'CSS0022970' => 'camsi', 'CSS0025655' => 'camsi', 'CSS0028665' => 'camsi', 'CSS0029117' => 'camsi', 'CSS0032024' => 'camsi', 'CSS0039681' => 'camsi', 'CSS0046516' => 'camsi', 'CSS0050307' => 'camsi', 'DCAR_005871' => 'dca', 'DCAR_007342' => 'dca', 'DCAR_024228' => 'dca', 'DCAR_027277' => 'dca', 'DCAR_030718' => 'dca', 'Dinv20287' => 'din', 'Dinv22461' => 'din', 'Dinv22464' => 'din', 'Dinv29912' => 'din', 'Dinv29913' => 'din', 'Dinv34580' => 'din', 'Dinv34582' => 'din', 'Dinv44632' => 'din', 'Duzib052G0266' => 'dzi', 'Duzib133G0907' => 'dzi', 'Duzib133G1034' => 'dzi', 'Duzib138G0207' => 'dzi', 'Duzib138G0491' => 'dzi', 'Duzib151G0812' => 'dzi', 'Duzib151G1166' => 'dzi', 'Duzib168G0192' => 'dzi', 'Duzib211G0077' => 'dzi', 'Duzib212G0429' => 'dzi', 'Duzib212G0472' => 'dzi', 'ECA233G2617' => 'eca', 'ECA236G4188' => 'eca', 'ECA240G0936' => 'eca', 'ECA240G1129' => 'eca', 'ECA247G0623' => 'eca', 'EL10Ac5g10451' => 'bvu', 'EL10Ac5g10453' => 'bvu', 'EL10Ac5g10894' => 'bvu', 'Eucgr.H00192' => 'egr', 'Eucgr.H00193' => 'egr', 'Eucgr.H00194' => 'egr', 'Eucgr.J01562' => 'egr', 'Eucgr.K03301' => 'egr', 'FAN02G0632' => 'fan', 'FAN05G5378' => 'fan', 'FAN09G3247' => 'fan', 'FAN12G0435' => 'fan', 'FAN12G2426' => 'fan', 'FAN14G1707' => 'fan', 'FAN14G4725' => 'fan', 'FAN15G2071' => 'fan', 'FAN17G3065' => 'fan', 'FAN19G1376' => 'fan', 'FAN20G0354' => 'fan', 'FAN20G2429' => 'fan', 'FAN20G2658' => 'fan', 'FAN24G2343' => 'fan', 'FAN27G2362' => 'fan', 'FAN28G1765' => 'fan', 'FvH4_1g16020' => 'fve', 'FvH4_2g04890' => 'fve', 'FvH4_2g22270' => 'fve', 'FvH4_4g02630' => 'fve', 'FvH4_4g02640' => 'fve', 'FvH4_6g02650' => 'fve', 'Glyma.02G140600' => 'gma', 'Glyma.03G159900' => 'gma', 'Glyma.05G234800' => 'gma', 'Glyma.07G269600' => 'gma', 'Glyma.08G042300' => 'gma', 'Glyma.10G033500' => 'gma', 'Glyma.10G185200' => 'gma', 'Glyma.17G004300' => 'gma', 'Glyma.19G161900' => 'gma', 'Glyma.20G205100' => 'gma', 'Glyma.20G205200' => 'gma', 'Gohir.A01G139101' => 'ghi', 'Gohir.A02G035600' => 'ghi', 'Gohir.A02G117901' => 'ghi', 'Gohir.A07G210100' => 'ghi', 'Gohir.A07G210200' => 'ghi', 'Gohir.A08G061100' => 'ghi', 'Gohir.A09G223000' => 'ghi', 'Gohir.A09G223100' => 'ghi', 'Gohir.A10G113900' => 'ghi', 'Gohir.A10G114000' => 'ghi', 'Gohir.D02G042300' => 'ghi', 'Gohir.D07G216100' => 'ghi', 'Gohir.D07G216200' => 'ghi', 'Gohir.D08G070400' => 'ghi', 'Gohir.D09G225000' => 'ghi', 'Gohir.D09G225100' => 'ghi', 'Gohir.D10G152300' => 'ghi', 'Gohir.D10G153200' => 'ghi', 'Gohir.D11G133701' => 'ghi', 'Gorai.004G074100' => 'gra', 'Gorai.005G046800' => 'gra', 'Gorai.006G246500' => 'gra', 'Gorai.006G246600' => 'gra', 'Gorai.007G142900' => 'gra', 'Gorai.011G171000' => 'gra', 'Gorai.011G171100' => 'gra', 'Gorai.013G104300' => 'gra', 'Gorai.013G104400' => 'gra', 'GSVIVG01000754001' => 'vvi', 'GSVIVG01000756001' => 'vvi', 'GSVIVG01010903001' => 'vvi', 'GSVIVG01017623001' => 'vvi', 'GSVIVG01018113001' => 'vvi', 'GSVIVG01018116001' => 'vvi', 'GSVIVG01018118001' => 'vvi', 'HanXRQChr03g0076211' => 'han', 'HanXRQChr03g0092431' => 'han', 'HanXRQChr03g0092441' => 'han', 'HanXRQChr03g0092591' => 'han', 'HanXRQChr03g0092671' => 'han', 'HanXRQChr03g0092681' => 'han', 'HanXRQChr03g0092691' => 'han', 'HanXRQChr03g0092701' => 'han', 'HanXRQChr03g0092721' => 'han', 'HanXRQChr03g0092731' => 'han', 'HanXRQChr04g0113681' => 'han', 'HanXRQChr10g0281371' => 'han', 'HanXRQChr11g0337141' => 'han', 'HanXRQChr13g0424521' => 'han', 'HanXRQChr13g0424531' => 'han', 'HanXRQChr13g0424541' => 'han', 'HanXRQChr16g0498221' => 'han', 'Haze_04377' => 'cav', 'Haze_11298' => 'cav', 'Haze_24547' => 'cav', 'Haze_24550' => 'cav', 'Haze_26587' => 'cav', 'Hma1.2p1_0650F.1_g195410' => 'hma', 'Hma1.2p1_0893F.1_g233470' => 'hma', 'HPP92_006508' => 'vpl', 'HPP92_024780' => 'vpl', 'Hund02688' => 'sun', 'Hund09380' => 'sun', 'Hund09381' => 'sun', 'Hund09832' => 'sun', 'Hund09833' => 'sun', 'Hund11351' => 'sun', 'Hund11513' => 'sun', 'Lalb_Chr06g0162591' => 'lal', 'Lalb_Chr06g0162601' => 'lal', 'Lalb_Chr06g0169321' => 'lal', 'Lalb_Chr09g0330951' => 'lal', 'Lalb_Chr16g0387631' => 'lal', 'Lalb_Chr21g0306241' => 'lal', 'Lalb_Chr25g0290051' => 'lal', 'Lalb_Chr25g0290061' => 'lal', 'Lalb_Chr25g0290071' => 'lal', 'Lj1g0003876' => 'lja', 'Lj1P1207T36' => 'lonja', 'Lj2C1156G12' => 'lonja', 'Lj3A793G39' => 'lonja', 'Lj3C580G2' => 'lonja', 'Lj3C780G2' => 'lonja', 'Lj3C780T4' => 'lonja', 'Lj3C793G9' => 'lonja', 'Lj4g0012960' => 'lja', 'Lj5g0021252' => 'lja', 'Lj5g0021484' => 'lja', 'Lj5g0024528' => 'lja', 'Lj6A399T12' => 'lonja', 'Lj6A656G65' => 'lonja', 'Lsat_1_v5_gn_3_125500' => 'lsa', 'Lsat_1_v5_gn_3_125540' => 'lsa', 'Lsat_1_v5_gn_5_72701' => 'lsa', 'Lsat_1_v5_gn_8_91560' => 'lsa', 'Lsat_1_v5_gn_9_9640' => 'lsa', 'Manes.01G200600' => 'mes', 'Manes.01G200700' => 'mes', 'Manes.03G168900' => 'mes', 'Manes.03G169000' => 'mes', 'Manes.05G085801' => 'mes', 'Manes.05G086200' => 'mes', 'Manes.15G036700' => 'mes', 'Manes.15G036900' => 'mes', 'Mapoly0004s0172' => 'mpo', 'Mapoly0023s0001' => 'mpo', 'Mapoly0142s0012' => 'mpo', 'MBI01_g32854_MAGBIO' => 'mbi', 'MBI11_g24427_MAGBIO' => 'mbi', 'MBI11_g47319_MAGBIO' => 'mbi', 'MCO01G433' => 'mco', 'MD00G1187800' => 'mdo', 'MD04G1226500' => 'mdo', 'MD05G1203900' => 'mdo', 'MD10G1191100' => 'mdo', 'MD12G1243500' => 'mdo', 'MD13G1207000' => 'mdo', 'MD13G1207100' => 'mdo', 'MD16G1208600' => 'mdo', 'Medtr1g050352' => 'mtr', 'Medtr1g070385' => 'mtr', 'Medtr1g070450' => 'mtr', 'Medtr1g075200' => 'mtr', 'Medtr1g075250' => 'mtr', 'Medtr1g075260' => 'mtr', 'Medtr1g475250' => 'mtr', 'Medtr4g075450' => 'mtr', 'Medtr7g096300' => 'mtr', 'Medtr8g105110' => 'mtr', 'MELO3C006470.2' => 'cme', 'MELO3C006471.2' => 'cme', 'MELO3C020772.2' => 'cme', 'MELO3C026780.2' => 'cme', 'MELO3C026781.2' => 'cme', 'Migut.D00390' => 'egut', 'Migut.G00435' => 'egut', 'Migut.G00436' => 'egut', 'Migut.G00718' => 'egut', 'MSTRG.21891' => 'ama', 'MSTRG.26910' => 'ama', 'MSTRG.4099' => 'ama', 'MSTRG.9925' => 'ama', 'Nitab4.5_0000165g0010' => 'nta', 'Nitab4.5_0000209g0180' => 'nta', 'Nitab4.5_0000244g0440' => 'nta', 'Nitab4.5_0000525g0220' => 'nta', 'Nitab4.5_0001597g0020' => 'nta', 'Nitab4.5_0001878g0040' => 'nta', 'Nitab4.5_0001878g0060' => 'nta', 'Nitab4.5_0002838g0100' => 'nta', 'Nitab4.5_0002838g0120' => 'nta', 'Nitab4.5_0004798g0030' => 'nta', 'Nitab4.5_0005420g0010' => 'nta', 'Nitab4.5_0005507g0010' => 'nta', 'Nitab4.5_0005574g0020' => 'nta', 'Nitab4.5_0005838g0010' => 'nta', 'Nitab4.5_0010580g0020' => 'nta', 'Nn1g02599' => 'nnu', 'Nn1g02608' => 'nnu', 'Nn3g17742' => 'nnu', 'Nn3g19534' => 'nnu', 'Nn3g19535' => 'nnu', 'Oeu008790.1' => 'oeu', 'Oeu008792.1' => 'oeu', 'Oeu032590.1' => 'oeu', 'Oeu035349.1' => 'oeu', 'Oeu049791.1' => 'oeu', 'Os01g0774500' => 'osa', 'Os03g0628800' => 'osa', 'Os03g0798600' => 'osa', 'Os05g0508800' => 'osa', 'Peaxi162Scf00036g02018' => 'pax', 'Peaxi162Scf00578g00032' => 'pax', 'Peaxi162Scf00578g00317' => 'pax', 'Peaxi162Scf00785g00114' => 'pax', 'Peaxi162Scf00813g00119' => 'pax', 'Peaxi162Scf00906g00227' => 'pax', 'PGR004G0875' => 'pgr', 'PGR004G2424' => 'pgr', 'PGR031G1239' => 'pgr', 'PGR031G2474' => 'pgr', 'PGR044G0423' => 'pgr', 'PGSC0003DMG400001128' => 'stu', 'PGSC0003DMG400007336' => 'stu', 'PGSC0003DMG400016318' => 'stu', 'PGSC0003DMG400016319' => 'stu', 'PGSC0003DMG400018074' => 'stu', 'Phvul.001G157700' => 'pvu', 'Phvul.002G148550' => 'pvu', 'Phvul.002G320200' => 'pvu', 'Phvul.003G089200' => 'pvu', 'Phvul.007G126000' => 'pvu', 'Phvul.007G126100' => 'pvu', 'Phvul.007G178000' => 'pvu', 'Phvul.007G178200' => 'pvu', 'Potri.002G043000' => 'ptr', 'Potri.002G043200' => 'ptr', 'Potri.003G123750' => 'ptr', 'Potri.005G055401' => 'ptr', 'Potri.005G219700' => 'ptr', 'Potri.005G220000' => 'ptr', 'Potri.008G161901' => 'ptr', 'Potri.008G162000' => 'ptr', 'Potri.008G162400' => 'ptr', 'Potri.010G076900' => 'ptr', 'Pp3c12_9180' => 'ppa', 'Pp3c13_19770' => 'ppa', 'Pp3c14_22950' => 'ppa', 'Pp3c16_12160' => 'ppa', 'Pp3c27_7820' => 'ppa', 'Pp3c2_3490' => 'ppa', 'Pp3c3_23700' => 'ppa', 'Pp3c3_36520' => 'ppa', 'Pp3c4_15250' => 'ppa', 'PRCOL_00007002' => 'pco', 'Prupe.1G030600' => 'ppe', 'Prupe.1G030700' => 'ppe', 'Prupe.6G345200' => 'ppe', 'Prupe.8G230300' => 'ppe', 'Prupe.8G230500' => 'ppe', 'Psat3g059600' => 'psa', 'Psat5g200920' => 'psa', 'Psat6g056440' => 'psa', 'Psat6g057360' => 'psa', 'Psat6g134120' => 'psa', 'Psat6g134160' => 'psa', 'Psat7g008640' => 'psa', 'Psat7g185240' => 'psa', 'PSO017G1330' => 'pso', 'PSO063G6097' => 'pso', 'PSO170G0835' => 'pso', 'PSO170G2499' => 'pso', 'PSO210G5058' => 'pso', 'PSO210G6154' => 'pso', 'PSO585G0031' => 'pso', 'PSO832G0264' => 'pso', 'PSO832G4288' => 'pso', 'QL03p027355' => 'qlo', 'QL03p027430' => 'qlo', 'QL04p081380' => 'qlo', 'QL06p015642' => 'qlo', 'QL06p015650' => 'qlo', 'QL06p015686' => 'qlo', 'QL12p042927' => 'qlo', 'QL93p1863_0035' => 'qlo', 'RcHm_v2.0_Chr3g0450581' => 'rch', 'RcHm_v2.0_Chr4g0390371' => 'rch', 'RcHm_v2.0_Chr4g0390381' => 'rch', 'RcHm_v2.0_Chr4g0390491' => 'rch', 'RcHm_v2.0_Chr4g0390501' => 'rch', 'RcHm_v2.0_Chr6g0289231' => 'rch', 'Rhsim04G0190400' => 'rsi', 'Rhsim04G0190500' => 'rsi', 'Rhsim04G0190600' => 'rsi', 'Rhsim13G0031400' => 'rsi', 'Rhsim13G0165600' => 'rsi', 'RhsimUnG0114600' => 'rsi', 'RhsimUnG0114700' => 'rsi', 'Sabra02G0034800' => 'sbr', 'Sabra02G0035100' => 'sbr', 'Sabra05G0168600' => 'sbr', 'Sabra05G0168800' => 'sbr', 'Sabra08G0123700' => 'sbr', 'Sabra10G0031900' => 'sbr', 'Sabra13G0039000' => 'sbr', 'SalBow2G0782' => 'sbo', 'SalBow2G1403' => 'sbo', 'SalBow4G0074' => 'sbo', 'SalBow4G2635' => 'sbo', 'SalBow5G3010' => 'sbo', 'Sc05g0000870' => 'sci', 'Sc05g0000890' => 'sci', 'Sc13g0005000' => 'sci', 'Sc13g0005030' => 'sci', 'Sc19g0003790' => 'sci', 'Sc19g0003800' => 'sci', 'Sed0003467' => 'sed', 'Sed0009355' => 'sed', 'Sed0009894' => 'sed', 'Sed0011972' => 'sed', 'Sed0021483' => 'sed', 'Sed0021750' => 'sed', 'Sed0026279' => 'sed', 'SEGI_05312' => 'sgi', 'SEGI_10112' => 'sgi', 'SEGI_15835' => 'sgi', 'SEGI_30386' => 'sgi', 'SEGI_34122' => 'sgi', 'SEGI_35063' => 'sgi', 'SGA_v2.0_scaffold101G29794' => 'sas', 'SGA_v2.0_scaffold1G00573' => 'sas', 'SGA_v2.0_scaffold79G25637' => 'sas', 'SGA_v2.0_scaffold88G27283' => 'sas', 'SGA_v2.0_scaffold88G27285' => 'sas', 'SGA_v2.0_scaffold88G27331' => 'sas', 'SHI09937' => 'shi', 'SMO119G0302' => 'smo', 'SMO137G0231' => 'smo', 'SMO367G1151' => 'smo', 'Solyc02g082000.3' => 'sly', 'Solyc06g031670.3' => 'sly', 'Solyc06g053810.3' => 'sly', 'Solyc07g025457.1' => 'sly', 'Solyc08g059740.1' => 'sly', 'Solyc08g059750.3' => 'sly', 'Solyc09g083370.3' => 'sly', 'Solyc12g038950.3' => 'sly', 'Sopen02g026630' => 'spe', 'Sopen06g018930' => 'spe', 'Sopen06g018940' => 'spe', 'Sopen08g009460' => 'spe', 'Sopen09g032290' => 'spe', 'Sp1g03080' => 'spa', 'Sp1g03090' => 'spa', 'Sp1g05480' => 'spa', 'Sp2g07860' => 'spa', 'Sp2g08430' => 'spa', 'Sp2g08440' => 'spa', 'Sp2g26200' => 'spa', 'Sp4g13170' => 'spa', 'Sp6g33840' => 'spa', 'SpUn1204_0010' => 'spa', 'TAR365G0908' => 'tar', 'TAR381G1270' => 'tar', 'TAR381G1651' => 'tar', 'TAR625G1131' => 'tar', 'TAR633G0962' => 'tar', 'TAR633G1729' => 'tar', 'TAR633G1864' => 'tar', 'TAR636G0221' => 'tar', 'TAR636G0314' => 'tar', 'TAR636G3202' => 'tar', 'THA.LOC104800805' => 'tha', 'THA.LOC104801096' => 'tha', 'THA.LOC104801555' => 'tha', 'THA.LOC104808491' => 'tha', 'THA.LOC104808595' => 'tha', 'THA.LOC104815985' => 'tha', 'THA.LOC104822250' => 'tha', 'THA.LOC104826071' => 'tha', 'Thecc.01G265200' => 'tca', 'Thecc.01G265300' => 'tca', 'Thecc.01G265700' => 'tca', 'Thecc.03G109100' => 'tca', 'Thecc.04G245900' => 'tca', 'Thecc.04G246000' => 'tca', 'Thhalv10003334m.g' => 'esa', 'Thhalv10005508m.g' => 'esa', 'Thhalv10005643m.g' => 'esa', 'Thhalv10007316m.g' => 'esa', 'Thhalv10009006m.g' => 'esa', 'Thhalv10009309m.g' => 'esa', 'Thhalv10014917m.g' => 'esa', 'Thhalv10014919m.g' => 'esa', 'Thhalv10015393m.g' => 'esa', 'Thhalv10016515m.g' => 'esa', 'Thhalv10029242m.g' => 'esa', 'TPR.G16654' => 'tpr', 'TPR.G20589' => 'tpr', 'TPR.G23029' => 'tpr', 'TPR.G27731' => 'tpr', 'TPR.G28889' => 'tpr', 'TPR.G28899' => 'tpr', 'TPR.G30846' => 'tpr', 'TPR.G5452' => 'tpr', 'TPR.G5713' => 'tpr', 'TPR.G9046' => 'tpr', 'TPR.G9061' => 'tpr', 'TWI09G1075' => 'twi', 'TWI12G0806' => 'twi', 'TWI18G0108' => 'twi', 'TWI53G1361' => 'twi', 'TWI73G0185' => 'twi', 'TWI73G0427' => 'twi', 'unitig_37.g12001' => 'ugi', 'unitig_747.g21660' => 'ugi', 'unitig_748.g7232' => 'ugi', 'unitig_748.g7315' => 'ugi', 'unitig_85.g27262' => 'ugi', 'unitig_92.g28220' => 'ugi', 'vmacro02632' => 'vma', 'vmacro08410' => 'vma', 'vmacro08411' => 'vma', 'vmacro15407' => 'vma', 'VMungo0251G3619' => 'vmu', 'VMungo0720G1204' => 'vmu', 'VMungo0720G1918' => 'vmu', 'VMungo0720G2387' => 'vmu', 'VMungo0720G2961' => 'vmu', 'VMungo1215G2154' => 'vmu', 'VMungo1383G2411' => 'vmu', 'Zm00001eb051130' => 'zma', 'Zm00001eb116830' => 'zma', 'Zm00001eb116850' => 'zma', 'Zm00001eb151740' => 'zma', 'Zm00001eb292360' => 'zma', 'Zm00001eb301640' => 'zma' ), 'gf_id' => 'HOM05D000856', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000856' ), 'data_identifier' => 'HOM05D000856', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000856', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p00010' => 'bna', 'A03p04160' => 'bna', 'A03p17160' => 'bna', 'A04p23370' => 'bna', 'A05p14860' => 'bna', 'A08p37020' => 'bna', 'A09p08050' => 'bna', 'A09p66800' => 'bna', 'A09p67940' => 'bna', 'A10p02680' => 'bna', 'A10p05320' => 'bna', 'Aa31LG1G20560' => 'aar', 'Aa31LG1G20610' => 'aar', 'Aa31LG1G7810' => 'aar', 'Aa31LG5G3590' => 'aar', 'Aa31LG5G6140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3819' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4683' => 'aag', 'Actinidia04480' => 'ach', 'Actinidia05466' => 'ach', 'Actinidia08445' => 'ach', 'Actinidia21170' => 'ach', 'Actinidia24812' => 'ach', 'Actinidia24951' => 'ach', 'Actinidia40088' => 'ach', 'Ah.02g111660' => 'amhyb', 'Ah.11g048900' => 'amhyb', 'Ah.11g049910' => 'amhyb', 'AL1G13870' => 'aly', 'AL1G13880' => 'aly', 'AL1G16760' => 'aly', 'AL390U10020' => 'aly', 'AL4G25520' => 'aly', 'AL6G19890' => 'aly', 'AL6G19900' => 'aly', 'AL6G19910' => 'aly', 'AL8G40100' => 'aly', 'Aqoxy2G03562' => 'aox', 'Aqoxy5G00316' => 'aox', 'Aqoxy5G00926' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1628KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1H403S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2FU6SJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.882I6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8YRY2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YN1SN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AF70II' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZA8L1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F916KL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHRD8H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KTZ8QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S22EMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8M29T' => 'arhy', 'AT1G04270' => 'ath', 'AT1G04280' => 'ath', 'AT1G06750' => 'ath', 'AT1G33850' => 'ath', 'AT2G30630' => 'ath', 'AT5G09490' => 'ath', 'AT5G09500' => 'ath', 'AT5G09510' => 'ath', 'AT5G43640' => 'ath', 'AT5G63070' => 'ath', 'ATR0605G315' => 'atr', 'Atru.chr11.175' => 'acertr', 'Atru.chr11.653' => 'acertr', 'Atru.chr3.1616' => 'acertr', 'Atru.chr4.2230' => 'acertr', 'Atru.chr4.2232' => 'acertr', 'Atru.chr5.1598' => 'acertr', 'Atru.chr5.1600' => 'acertr', 'Atru.chr5.2188' => 'acertr', 'AUR62008326' => 'cqu', 'AUR62011922' => 'cqu', 'AUR62011924' => 'cqu', 'AUR62021771' => 'cqu', 'AUR62032237' => 'cqu', 'AUR62032240' => 'cqu', 'BcaB01g05572' => 'bca', 'BcaB02g10337' => 'bca', 'BcaB04g19944' => 'bca', 'BcaB05g21548' => 'bca', 'BcaB05g21549' => 'bca', 'BcaB05g23227' => 'bca', 'BcaB06g26256' => 'bca', 'BcaB06g26257' => 'bca', 'BcaB06g28379' => 'bca', 'BcaC02g11159' => 'bca', 'BcaC03g13258' => 'bca', 'BcaC03g13259' => 'bca', 'BcaC05g24456' => 'bca', 'BcaC05g24457' => 'bca', 'BcaC07g36922' => 'bca', 'BcaC07g36923' => 'bca', 'BcaC07g42050' => 'bca', 'BcaC07g42176' => 'bca', 'BcaC07g42195' => 'bca', 'BcaC07g42196' => 'bca', 'BcaNung06674' => 'bca', 'BolC2t06351H' => 'bol', 'BolC2t06352H' => 'bol', 'BolC3t12993H' => 'bol', 'BolC4t23525H' => 'bol', 'BolC4t27475H' => 'bol', 'BolC5t29025H' => 'bol', 'BolC5t29026H' => 'bol', 'BolC8t46898H' => 'bol', 'BolC8t46899H' => 'bol', 'BolC8t52630H' => 'bol', 'BolC8t52765H' => 'bol', 'BolC9t53824H' => 'bol', 'BraA03t09760Z' => 'bra', 'BraA03t10990Z' => 'bra', 'BraA05t20413Z' => 'bra', 'BraA08t35602Z' => 'bra', 'BraA09t36458Z' => 'bra', 'BraA09t42018Z' => 'bra', 'BraA09t42129Z' => 'bra', 'BraA10t42536Z' => 'bra', 'BraA10t42537Z' => 'bra', 'C01p10690' => 'bna', 'C02p03890' => 'bna', 'C02p03900' => 'bna', 'C03p04620' => 'bna', 'C04p19870' => 'bna', 'C04p59670' => 'bna', 'C05p02460' => 'bna', 'C05p02470' => 'bna', 'C08p00980' => 'bna', 'C08p00990' => 'bna', 'C08p51030' => 'bna', 'C08p52360' => 'bna', 'C09p09120' => 'bna', 'CAN.G19.15' => 'can', 'CAN.G251.10' => 'can', 'CAN.G251.9' => 'can', 'CAN.G398.24' => 'can', 'CAN.G410.32' => 'can', 'CAN.G881.2' => 'can', 'CANSAT01G3025' => 'cansat', 'CANSAT78G1211' => 'cansat', 'CANSAT78G1218' => 'cansat', 'CANSAT78G1521' => 'cansat', 'CANSAT78G1670' => 'cansat', 'CARHR003600' => 'chi', 'CARHR003610' => 'chi', 'CARHR006290' => 'chi', 'CARHR006430' => 'chi', 'CARHR124110' => 'chi', 'CARHR203870' => 'chi', 'CARHR203880' => 'chi', 'CARHR203890' => 'chi', 'CARHR276880' => 'chi', 'Carub.0001s0346' => 'cru', 'Carub.0001s0347' => 'cru', 'Carub.0001s0607' => 'cru', 'Carub.0003s2768' => 'cru', 'Carub.0003s2769' => 'cru', 'Carub.0004s1178' => 'cru', 'Carub.0006s0806' => 'cru', 'Carub.0006s0807' => 'cru', 'Carub.0006s0808' => 'cru', 'Carub.0008s0501' => 'cru', 'Carub.0008s2379' => 'cru', 'Ca_08655_v3' => 'car', 'Ca_08922_v3' => 'car', 'Ca_08923_v3' => 'car', 'Ca_09119_v3' => 'car', 'Ca_09703_v3' => 'car', 'Ca_09705_v3' => 'car', 'Ca_09835_v3' => 'car', 'Ca_26403_v3' => 'car', 'Ca_30719_v3' => 'car', 'CBR_g17958' => 'cbr', 'CBR_g40516' => 'cbr', 'Cc00_g05350' => 'ccan', 'Cc01_g18690' => 'ccan', 'Cc03_g04830' => 'ccan', 'Cc03_g04850' => 'ccan', 'CDE02G4469' => 'cde', 'CDE06G0883' => 'cde', 'CDE06G1295' => 'cde', 'CDE06G1390' => 'cde', 'CDE07G0584' => 'cde', 'CDE07G1084' => 'cde', 'CDE08G1259' => 'cde', 'Cfa002341' => 'cfa', 'Cfa024337' => 'cfa', 'Ciclev10004749m.g' => 'ccl', 'Ciclev10006127m.g' => 'ccl', 'Ciclev10019720m.g' => 'ccl', 'Ciclev10022652m.g' => 'ccl', 'CiPaw.01G190400' => 'cil', 'CiPaw.01G190500' => 'cil', 'CiPaw.02G116400' => 'cil', 'CiPaw.02G116500' => 'cil', 'CiPaw.04G183000' => 'cil', 'CiPaw.04G183300' => 'cil', 'ClCG05G004610' => 'cla', 'ClCG05G004620' => 'cla', 'ClCG06G006730' => 'cla', 'ClCG06G006740' => 'cla', 'ClCG11G003690' => 'cla', 'COL.COLO4_08276' => 'col', 'COL.COLO4_08277' => 'col', 'COL.COLO4_15787' => 'col', 'COL.COLO4_15789' => 'col', 'Cpa.g.c44815' => 'cpa', 'Cpa.g.sc52.144' => 'cpa', 'Cpa.g.sc58.46' => 'cpa', 'Cpa.g.sc58.47' => 'cpa', 'Cre08.g360900' => 'cre', 'CsaV3_2G013030' => 'csa', 'CsaV3_2G013050' => 'csa', 'CsaV3_2G015620' => 'csa', 'CsaV3_3G012590' => 'csa', 'CsaV3_3G012600' => 'csa', 'CSS0001641' => 'camsi', 'CSS0008310' => 'camsi', 'CSS0013011' => 'camsi', 'CSS0017147' => 'camsi', 'CSS0022970' => 'camsi', 'CSS0025655' => 'camsi', 'CSS0028665' => 'camsi', 'CSS0029117' => 'camsi', 'CSS0032024' => 'camsi', 'CSS0039681' => 'camsi', 'CSS0046516' => 'camsi', 'CSS0050307' => 'camsi', 'DCAR_005871' => 'dca', 'DCAR_007342' => 'dca', 'DCAR_024228' => 'dca', 'DCAR_027277' => 'dca', 'DCAR_030718' => 'dca', 'Dinv20287' => 'din', 'Dinv22461' => 'din', 'Dinv22464' => 'din', 'Dinv29912' => 'din', 'Dinv29913' => 'din', 'Dinv34580' => 'din', 'Dinv34582' => 'din', 'Dinv44632' => 'din', 'Duzib052G0266' => 'dzi', 'Duzib133G0907' => 'dzi', 'Duzib133G1034' => 'dzi', 'Duzib138G0207' => 'dzi', 'Duzib138G0491' => 'dzi', 'Duzib151G0812' => 'dzi', 'Duzib151G1166' => 'dzi', 'Duzib168G0192' => 'dzi', 'Duzib211G0077' => 'dzi', 'Duzib212G0429' => 'dzi', 'Duzib212G0472' => 'dzi', 'ECA233G2617' => 'eca', 'ECA236G4188' => 'eca', 'ECA240G0936' => 'eca', 'ECA240G1129' => 'eca', 'ECA247G0623' => 'eca', 'EL10Ac5g10451' => 'bvu', 'EL10Ac5g10453' => 'bvu', 'EL10Ac5g10894' => 'bvu', 'Eucgr.H00192' => 'egr', 'Eucgr.H00193' => 'egr', 'Eucgr.H00194' => 'egr', 'Eucgr.J01562' => 'egr', 'Eucgr.K03301' => 'egr', 'FAN02G0632' => 'fan', 'FAN05G5378' => 'fan', 'FAN09G3247' => 'fan', 'FAN12G0435' => 'fan', 'FAN12G2426' => 'fan', 'FAN14G1707' => 'fan', 'FAN14G4725' => 'fan', 'FAN15G2071' => 'fan', 'FAN17G3065' => 'fan', 'FAN19G1376' => 'fan', 'FAN20G0354' => 'fan', 'FAN20G2429' => 'fan', 'FAN20G2658' => 'fan', 'FAN24G2343' => 'fan', 'FAN27G2362' => 'fan', 'FAN28G1765' => 'fan', 'FvH4_1g16020' => 'fve', 'FvH4_2g04890' => 'fve', 'FvH4_2g22270' => 'fve', 'FvH4_4g02630' => 'fve', 'FvH4_4g02640' => 'fve', 'FvH4_6g02650' => 'fve', 'Glyma.02G140600' => 'gma', 'Glyma.03G159900' => 'gma', 'Glyma.05G234800' => 'gma', 'Glyma.07G269600' => 'gma', 'Glyma.08G042300' => 'gma', 'Glyma.10G033500' => 'gma', 'Glyma.10G185200' => 'gma', 'Glyma.17G004300' => 'gma', 'Glyma.19G161900' => 'gma', 'Glyma.20G205100' => 'gma', 'Glyma.20G205200' => 'gma', 'Gohir.A01G139101' => 'ghi', 'Gohir.A02G035600' => 'ghi', 'Gohir.A02G117901' => 'ghi', 'Gohir.A07G210100' => 'ghi', 'Gohir.A07G210200' => 'ghi', 'Gohir.A08G061100' => 'ghi', 'Gohir.A09G223000' => 'ghi', 'Gohir.A09G223100' => 'ghi', 'Gohir.A10G113900' => 'ghi', 'Gohir.A10G114000' => 'ghi', 'Gohir.D02G042300' => 'ghi', 'Gohir.D07G216100' => 'ghi', 'Gohir.D07G216200' => 'ghi', 'Gohir.D08G070400' => 'ghi', 'Gohir.D09G225000' => 'ghi', 'Gohir.D09G225100' => 'ghi', 'Gohir.D10G152300' => 'ghi', 'Gohir.D10G153200' => 'ghi', 'Gohir.D11G133701' => 'ghi', 'Gorai.004G074100' => 'gra', 'Gorai.005G046800' => 'gra', 'Gorai.006G246500' => 'gra', 'Gorai.006G246600' => 'gra', 'Gorai.007G142900' => 'gra', 'Gorai.011G171000' => 'gra', 'Gorai.011G171100' => 'gra', 'Gorai.013G104300' => 'gra', 'Gorai.013G104400' => 'gra', 'GSVIVG01000754001' => 'vvi', 'GSVIVG01000756001' => 'vvi', 'GSVIVG01010903001' => 'vvi', 'GSVIVG01017623001' => 'vvi', 'GSVIVG01018113001' => 'vvi', 'GSVIVG01018116001' => 'vvi', 'GSVIVG01018118001' => 'vvi', 'HanXRQChr03g0076211' => 'han', 'HanXRQChr03g0092431' => 'han', 'HanXRQChr03g0092441' => 'han', 'HanXRQChr03g0092591' => 'han', 'HanXRQChr03g0092671' => 'han', 'HanXRQChr03g0092681' => 'han', 'HanXRQChr03g0092691' => 'han', 'HanXRQChr03g0092701' => 'han', 'HanXRQChr03g0092721' => 'han', 'HanXRQChr03g0092731' => 'han', 'HanXRQChr04g0113681' => 'han', 'HanXRQChr10g0281371' => 'han', 'HanXRQChr11g0337141' => 'han', 'HanXRQChr13g0424521' => 'han', 'HanXRQChr13g0424531' => 'han', 'HanXRQChr13g0424541' => 'han', 'HanXRQChr16g0498221' => 'han', 'Haze_04377' => 'cav', 'Haze_11298' => 'cav', 'Haze_24547' => 'cav', 'Haze_24550' => 'cav', 'Haze_26587' => 'cav', 'Hma1.2p1_0650F.1_g195410' => 'hma', 'Hma1.2p1_0893F.1_g233470' => 'hma', 'HPP92_006508' => 'vpl', 'HPP92_024780' => 'vpl', 'Hund02688' => 'sun', 'Hund09380' => 'sun', 'Hund09381' => 'sun', 'Hund09832' => 'sun', 'Hund09833' => 'sun', 'Hund11351' => 'sun', 'Hund11513' => 'sun', 'Lalb_Chr06g0162591' => 'lal', 'Lalb_Chr06g0162601' => 'lal', 'Lalb_Chr06g0169321' => 'lal', 'Lalb_Chr09g0330951' => 'lal', 'Lalb_Chr16g0387631' => 'lal', 'Lalb_Chr21g0306241' => 'lal', 'Lalb_Chr25g0290051' => 'lal', 'Lalb_Chr25g0290061' => 'lal', 'Lalb_Chr25g0290071' => 'lal', 'Lj1g0003876' => 'lja', 'Lj1P1207T36' => 'lonja', 'Lj2C1156G12' => 'lonja', 'Lj3A793G39' => 'lonja', 'Lj3C580G2' => 'lonja', 'Lj3C780G2' => 'lonja', 'Lj3C780T4' => 'lonja', 'Lj3C793G9' => 'lonja', 'Lj4g0012960' => 'lja', 'Lj5g0021252' => 'lja', 'Lj5g0021484' => 'lja', 'Lj5g0024528' => 'lja', 'Lj6A399T12' => 'lonja', 'Lj6A656G65' => 'lonja', 'Lsat_1_v5_gn_3_125500' => 'lsa', 'Lsat_1_v5_gn_3_125540' => 'lsa', 'Lsat_1_v5_gn_5_72701' => 'lsa', 'Lsat_1_v5_gn_8_91560' => 'lsa', 'Lsat_1_v5_gn_9_9640' => 'lsa', 'Manes.01G200600' => 'mes', 'Manes.01G200700' => 'mes', 'Manes.03G168900' => 'mes', 'Manes.03G169000' => 'mes', 'Manes.05G085801' => 'mes', 'Manes.05G086200' => 'mes', 'Manes.15G036700' => 'mes', 'Manes.15G036900' => 'mes', 'Mapoly0004s0172' => 'mpo', 'Mapoly0023s0001' => 'mpo', 'Mapoly0142s0012' => 'mpo', 'MBI01_g32854_MAGBIO' => 'mbi', 'MBI11_g24427_MAGBIO' => 'mbi', 'MBI11_g47319_MAGBIO' => 'mbi', 'MCO01G433' => 'mco', 'MD00G1187800' => 'mdo', 'MD04G1226500' => 'mdo', 'MD05G1203900' => 'mdo', 'MD10G1191100' => 'mdo', 'MD12G1243500' => 'mdo', 'MD13G1207000' => 'mdo', 'MD13G1207100' => 'mdo', 'MD16G1208600' => 'mdo', 'Medtr1g050352' => 'mtr', 'Medtr1g070385' => 'mtr', 'Medtr1g070450' => 'mtr', 'Medtr1g075200' => 'mtr', 'Medtr1g075250' => 'mtr', 'Medtr1g075260' => 'mtr', 'Medtr1g475250' => 'mtr', 'Medtr4g075450' => 'mtr', 'Medtr7g096300' => 'mtr', 'Medtr8g105110' => 'mtr', 'MELO3C006470.2' => 'cme', 'MELO3C006471.2' => 'cme', 'MELO3C020772.2' => 'cme', 'MELO3C026780.2' => 'cme', 'MELO3C026781.2' => 'cme', 'Migut.D00390' => 'egut', 'Migut.G00435' => 'egut', 'Migut.G00436' => 'egut', 'Migut.G00718' => 'egut', 'MSTRG.21891' => 'ama', 'MSTRG.26910' => 'ama', 'MSTRG.4099' => 'ama', 'MSTRG.9925' => 'ama', 'Nitab4.5_0000165g0010' => 'nta', 'Nitab4.5_0000209g0180' => 'nta', 'Nitab4.5_0000244g0440' => 'nta', 'Nitab4.5_0000525g0220' => 'nta', 'Nitab4.5_0001597g0020' => 'nta', 'Nitab4.5_0001878g0040' => 'nta', 'Nitab4.5_0001878g0060' => 'nta', 'Nitab4.5_0002838g0100' => 'nta', 'Nitab4.5_0002838g0120' => 'nta', 'Nitab4.5_0004798g0030' => 'nta', 'Nitab4.5_0005420g0010' => 'nta', 'Nitab4.5_0005507g0010' => 'nta', 'Nitab4.5_0005574g0020' => 'nta', 'Nitab4.5_0005838g0010' => 'nta', 'Nitab4.5_0010580g0020' => 'nta', 'Nn1g02599' => 'nnu', 'Nn1g02608' => 'nnu', 'Nn3g17742' => 'nnu', 'Nn3g19534' => 'nnu', 'Nn3g19535' => 'nnu', 'Oeu008790.1' => 'oeu', 'Oeu008792.1' => 'oeu', 'Oeu032590.1' => 'oeu', 'Oeu035349.1' => 'oeu', 'Oeu049791.1' => 'oeu', 'Os01g0774500' => 'osa', 'Os03g0628800' => 'osa', 'Os03g0798600' => 'osa', 'Os05g0508800' => 'osa', 'Peaxi162Scf00036g02018' => 'pax', 'Peaxi162Scf00578g00032' => 'pax', 'Peaxi162Scf00578g00317' => 'pax', 'Peaxi162Scf00785g00114' => 'pax', 'Peaxi162Scf00813g00119' => 'pax', 'Peaxi162Scf00906g00227' => 'pax', 'PGR004G0875' => 'pgr', 'PGR004G2424' => 'pgr', 'PGR031G1239' => 'pgr', 'PGR031G2474' => 'pgr', 'PGR044G0423' => 'pgr', 'PGSC0003DMG400001128' => 'stu', 'PGSC0003DMG400007336' => 'stu', 'PGSC0003DMG400016318' => 'stu', 'PGSC0003DMG400016319' => 'stu', 'PGSC0003DMG400018074' => 'stu', 'Phvul.001G157700' => 'pvu', 'Phvul.002G148550' => 'pvu', 'Phvul.002G320200' => 'pvu', 'Phvul.003G089200' => 'pvu', 'Phvul.007G126000' => 'pvu', 'Phvul.007G126100' => 'pvu', 'Phvul.007G178000' => 'pvu', 'Phvul.007G178200' => 'pvu', 'Potri.002G043000' => 'ptr', 'Potri.002G043200' => 'ptr', 'Potri.003G123750' => 'ptr', 'Potri.005G055401' => 'ptr', 'Potri.005G219700' => 'ptr', 'Potri.005G220000' => 'ptr', 'Potri.008G161901' => 'ptr', 'Potri.008G162000' => 'ptr', 'Potri.008G162400' => 'ptr', 'Potri.010G076900' => 'ptr', 'Pp3c12_9180' => 'ppa', 'Pp3c13_19770' => 'ppa', 'Pp3c14_22950' => 'ppa', 'Pp3c16_12160' => 'ppa', 'Pp3c27_7820' => 'ppa', 'Pp3c2_3490' => 'ppa', 'Pp3c3_23700' => 'ppa', 'Pp3c3_36520' => 'ppa', 'Pp3c4_15250' => 'ppa', 'PRCOL_00007002' => 'pco', 'Prupe.1G030600' => 'ppe', 'Prupe.1G030700' => 'ppe', 'Prupe.6G345200' => 'ppe', 'Prupe.8G230300' => 'ppe', 'Prupe.8G230500' => 'ppe', 'Psat3g059600' => 'psa', 'Psat5g200920' => 'psa', 'Psat6g056440' => 'psa', 'Psat6g057360' => 'psa', 'Psat6g134120' => 'psa', 'Psat6g134160' => 'psa', 'Psat7g008640' => 'psa', 'Psat7g185240' => 'psa', 'PSO017G1330' => 'pso', 'PSO063G6097' => 'pso', 'PSO170G0835' => 'pso', 'PSO170G2499' => 'pso', 'PSO210G5058' => 'pso', 'PSO210G6154' => 'pso', 'PSO585G0031' => 'pso', 'PSO832G0264' => 'pso', 'PSO832G4288' => 'pso', 'QL03p027355' => 'qlo', 'QL03p027430' => 'qlo', 'QL04p081380' => 'qlo', 'QL06p015642' => 'qlo', 'QL06p015650' => 'qlo', 'QL06p015686' => 'qlo', 'QL12p042927' => 'qlo', 'QL93p1863_0035' => 'qlo', 'RcHm_v2.0_Chr3g0450581' => 'rch', 'RcHm_v2.0_Chr4g0390371' => 'rch', 'RcHm_v2.0_Chr4g0390381' => 'rch', 'RcHm_v2.0_Chr4g0390491' => 'rch', 'RcHm_v2.0_Chr4g0390501' => 'rch', 'RcHm_v2.0_Chr6g0289231' => 'rch', 'Rhsim04G0190400' => 'rsi', 'Rhsim04G0190500' => 'rsi', 'Rhsim04G0190600' => 'rsi', 'Rhsim13G0031400' => 'rsi', 'Rhsim13G0165600' => 'rsi', 'RhsimUnG0114600' => 'rsi', 'RhsimUnG0114700' => 'rsi', 'Sabra02G0034800' => 'sbr', 'Sabra02G0035100' => 'sbr', 'Sabra05G0168600' => 'sbr', 'Sabra05G0168800' => 'sbr', 'Sabra08G0123700' => 'sbr', 'Sabra10G0031900' => 'sbr', 'Sabra13G0039000' => 'sbr', 'SalBow2G0782' => 'sbo', 'SalBow2G1403' => 'sbo', 'SalBow4G0074' => 'sbo', 'SalBow4G2635' => 'sbo', 'SalBow5G3010' => 'sbo', 'Sc05g0000870' => 'sci', 'Sc05g0000890' => 'sci', 'Sc13g0005000' => 'sci', 'Sc13g0005030' => 'sci', 'Sc19g0003790' => 'sci', 'Sc19g0003800' => 'sci', 'Sed0003467' => 'sed', 'Sed0009355' => 'sed', 'Sed0009894' => 'sed', 'Sed0011972' => 'sed', 'Sed0021483' => 'sed', 'Sed0021750' => 'sed', 'Sed0026279' => 'sed', 'SEGI_05312' => 'sgi', 'SEGI_10112' => 'sgi', 'SEGI_15835' => 'sgi', 'SEGI_30386' => 'sgi', 'SEGI_34122' => 'sgi', 'SEGI_35063' => 'sgi', 'SGA_v2.0_scaffold101G29794' => 'sas', 'SGA_v2.0_scaffold1G00573' => 'sas', 'SGA_v2.0_scaffold79G25637' => 'sas', 'SGA_v2.0_scaffold88G27283' => 'sas', 'SGA_v2.0_scaffold88G27285' => 'sas', 'SGA_v2.0_scaffold88G27331' => 'sas', 'SHI09937' => 'shi', 'SMO119G0302' => 'smo', 'SMO137G0231' => 'smo', 'SMO367G1151' => 'smo', 'Solyc02g082000.3' => 'sly', 'Solyc06g031670.3' => 'sly', 'Solyc06g053810.3' => 'sly', 'Solyc07g025457.1' => 'sly', 'Solyc08g059740.1' => 'sly', 'Solyc08g059750.3' => 'sly', 'Solyc09g083370.3' => 'sly', 'Solyc12g038950.3' => 'sly', 'Sopen02g026630' => 'spe', 'Sopen06g018930' => 'spe', 'Sopen06g018940' => 'spe', 'Sopen08g009460' => 'spe', 'Sopen09g032290' => 'spe', 'Sp1g03080' => 'spa', 'Sp1g03090' => 'spa', 'Sp1g05480' => 'spa', 'Sp2g07860' => 'spa', 'Sp2g08430' => 'spa', 'Sp2g08440' => 'spa', 'Sp2g26200' => 'spa', 'Sp4g13170' => 'spa', 'Sp6g33840' => 'spa', 'SpUn1204_0010' => 'spa', 'TAR365G0908' => 'tar', 'TAR381G1270' => 'tar', 'TAR381G1651' => 'tar', 'TAR625G1131' => 'tar', 'TAR633G0962' => 'tar', 'TAR633G1729' => 'tar', 'TAR633G1864' => 'tar', 'TAR636G0221' => 'tar', 'TAR636G0314' => 'tar', 'TAR636G3202' => 'tar', 'THA.LOC104800805' => 'tha', 'THA.LOC104801096' => 'tha', 'THA.LOC104801555' => 'tha', 'THA.LOC104808491' => 'tha', 'THA.LOC104808595' => 'tha', 'THA.LOC104815985' => 'tha', 'THA.LOC104822250' => 'tha', 'THA.LOC104826071' => 'tha', 'Thecc.01G265200' => 'tca', 'Thecc.01G265300' => 'tca', 'Thecc.01G265700' => 'tca', 'Thecc.03G109100' => 'tca', 'Thecc.04G245900' => 'tca', 'Thecc.04G246000' => 'tca', 'Thhalv10003334m.g' => 'esa', 'Thhalv10005508m.g' => 'esa', 'Thhalv10005643m.g' => 'esa', 'Thhalv10007316m.g' => 'esa', 'Thhalv10009006m.g' => 'esa', 'Thhalv10009309m.g' => 'esa', 'Thhalv10014917m.g' => 'esa', 'Thhalv10014919m.g' => 'esa', 'Thhalv10015393m.g' => 'esa', 'Thhalv10016515m.g' => 'esa', 'Thhalv10029242m.g' => 'esa', 'TPR.G16654' => 'tpr', 'TPR.G20589' => 'tpr', 'TPR.G23029' => 'tpr', 'TPR.G27731' => 'tpr', 'TPR.G28889' => 'tpr', 'TPR.G28899' => 'tpr', 'TPR.G30846' => 'tpr', 'TPR.G5452' => 'tpr', 'TPR.G5713' => 'tpr', 'TPR.G9046' => 'tpr', 'TPR.G9061' => 'tpr', 'TWI09G1075' => 'twi', 'TWI12G0806' => 'twi', 'TWI18G0108' => 'twi', 'TWI53G1361' => 'twi', 'TWI73G0185' => 'twi', 'TWI73G0427' => 'twi', 'unitig_37.g12001' => 'ugi', 'unitig_747.g21660' => 'ugi', 'unitig_748.g7232' => 'ugi', 'unitig_748.g7315' => 'ugi', 'unitig_85.g27262' => 'ugi', 'unitig_92.g28220' => 'ugi', 'vmacro02632' => 'vma', 'vmacro08410' => 'vma', 'vmacro08411' => 'vma', 'vmacro15407' => 'vma', 'VMungo0251G3619' => 'vmu', 'VMungo0720G1204' => 'vmu', 'VMungo0720G1918' => 'vmu', 'VMungo0720G2387' => 'vmu', 'VMungo0720G2961' => 'vmu', 'VMungo1215G2154' => 'vmu', 'VMungo1383G2411' => 'vmu', 'Zm00001eb051130' => 'zma', 'Zm00001eb116830' => 'zma', 'Zm00001eb116850' => 'zma', 'Zm00001eb151740' => 'zma', 'Zm00001eb292360' => 'zma', 'Zm00001eb301640' => 'zma' ) $gf_id = 'HOM05D000856' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000856' ) $data_identifier = 'HOM05D000856' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 13, 'ath' => (int) 10, 'atr' => (int) 1, 'acertr' => (int) 8, 'cqu' => (int) 6, 'bca' => (int) 21, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 11, 'car' => (int) 9, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 8, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 5, 'fan' => (int) 16, 'fve' => (int) 6, 'gma' => (int) 11, 'ghi' => (int) 19, 'gra' => (int) 9, 'vvi' => (int) 7, 'han' => (int) 17, 'cav' => (int) 5, 'hma' => (int) 2, 'vpl' => (int) 2, 'sun' => (int) 7, 'lal' => (int) 9, 'lja' => (int) 5, 'lonja' => (int) 9, 'lsa' => (int) 5, 'mes' => (int) 8, 'mpo' => (int) 3, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 10, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 15, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 9, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 9, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 6, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 5, 'spa' => (int) 10, 'tar' => (int) 10, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 11, 'tpr' => (int) 11, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 4, 'vmu' => (int) 7, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb301640' $species_info = array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ) $local_species = 'bna' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000856', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p00010' => 'bna', 'A03p04160' => 'bna', 'A03p17160' => 'bna', 'A04p23370' => 'bna', 'A05p14860' => 'bna', 'A08p37020' => 'bna', 'A09p08050' => 'bna', 'A09p66800' => 'bna', 'A09p67940' => 'bna', 'A10p02680' => 'bna', 'A10p05320' => 'bna', 'Aa31LG1G20560' => 'aar', 'Aa31LG1G20610' => 'aar', 'Aa31LG1G7810' => 'aar', 'Aa31LG5G3590' => 'aar', 'Aa31LG5G6140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3819' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4683' => 'aag', 'Actinidia04480' => 'ach', 'Actinidia05466' => 'ach', 'Actinidia08445' => 'ach', 'Actinidia21170' => 'ach', 'Actinidia24812' => 'ach', 'Actinidia24951' => 'ach', 'Actinidia40088' => 'ach', 'Ah.02g111660' => 'amhyb', 'Ah.11g048900' => 'amhyb', 'Ah.11g049910' => 'amhyb', 'AL1G13870' => 'aly', 'AL1G13880' => 'aly', 'AL1G16760' => 'aly', 'AL390U10020' => 'aly', 'AL4G25520' => 'aly', 'AL6G19890' => 'aly', 'AL6G19900' => 'aly', 'AL6G19910' => 'aly', 'AL8G40100' => 'aly', 'Aqoxy2G03562' => 'aox', 'Aqoxy5G00316' => 'aox', 'Aqoxy5G00926' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1628KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1H403S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2FU6SJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.882I6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8YRY2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YN1SN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AF70II' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZA8L1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F916KL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHRD8H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KTZ8QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S22EMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8M29T' => 'arhy', 'AT1G04270' => 'ath', 'AT1G04280' => 'ath', 'AT1G06750' => 'ath', 'AT1G33850' => 'ath', 'AT2G30630' => 'ath', 'AT5G09490' => 'ath', 'AT5G09500' => 'ath', 'AT5G09510' => 'ath', 'AT5G43640' => 'ath', 'AT5G63070' => 'ath', 'ATR0605G315' => 'atr', 'Atru.chr11.175' => 'acertr', 'Atru.chr11.653' => 'acertr', 'Atru.chr3.1616' => 'acertr', 'Atru.chr4.2230' => 'acertr', 'Atru.chr4.2232' => 'acertr', 'Atru.chr5.1598' => 'acertr', 'Atru.chr5.1600' => 'acertr', 'Atru.chr5.2188' => 'acertr', 'AUR62008326' => 'cqu', 'AUR62011922' => 'cqu', 'AUR62011924' => 'cqu', 'AUR62021771' => 'cqu', 'AUR62032237' => 'cqu', 'AUR62032240' => 'cqu', 'BcaB01g05572' => 'bca', 'BcaB02g10337' => 'bca', 'BcaB04g19944' => 'bca', 'BcaB05g21548' => 'bca', 'BcaB05g21549' => 'bca', 'BcaB05g23227' => 'bca', 'BcaB06g26256' => 'bca', 'BcaB06g26257' => 'bca', 'BcaB06g28379' => 'bca', 'BcaC02g11159' => 'bca', 'BcaC03g13258' => 'bca', 'BcaC03g13259' => 'bca', 'BcaC05g24456' => 'bca', 'BcaC05g24457' => 'bca', 'BcaC07g36922' => 'bca', 'BcaC07g36923' => 'bca', 'BcaC07g42050' => 'bca', 'BcaC07g42176' => 'bca', 'BcaC07g42195' => 'bca', 'BcaC07g42196' => 'bca', 'BcaNung06674' => 'bca', 'BolC2t06351H' => 'bol', 'BolC2t06352H' => 'bol', 'BolC3t12993H' => 'bol', 'BolC4t23525H' => 'bol', 'BolC4t27475H' => 'bol', 'BolC5t29025H' => 'bol', 'BolC5t29026H' => 'bol', 'BolC8t46898H' => 'bol', 'BolC8t46899H' => 'bol', 'BolC8t52630H' => 'bol', 'BolC8t52765H' => 'bol', 'BolC9t53824H' => 'bol', 'BraA03t09760Z' => 'bra', 'BraA03t10990Z' => 'bra', 'BraA05t20413Z' => 'bra', 'BraA08t35602Z' => 'bra', 'BraA09t36458Z' => 'bra', 'BraA09t42018Z' => 'bra', 'BraA09t42129Z' => 'bra', 'BraA10t42536Z' => 'bra', 'BraA10t42537Z' => 'bra', 'C01p10690' => 'bna', 'C02p03890' => 'bna', 'C02p03900' => 'bna', 'C03p04620' => 'bna', 'C04p19870' => 'bna', 'C04p59670' => 'bna', 'C05p02460' => 'bna', 'C05p02470' => 'bna', 'C08p00980' => 'bna', 'C08p00990' => 'bna', 'C08p51030' => 'bna', 'C08p52360' => 'bna', 'C09p09120' => 'bna', 'CAN.G19.15' => 'can', 'CAN.G251.10' => 'can', 'CAN.G251.9' => 'can', 'CAN.G398.24' => 'can', 'CAN.G410.32' => 'can', 'CAN.G881.2' => 'can', 'CANSAT01G3025' => 'cansat', 'CANSAT78G1211' => 'cansat', 'CANSAT78G1218' => 'cansat', 'CANSAT78G1521' => 'cansat', 'CANSAT78G1670' => 'cansat', 'CARHR003600' => 'chi', 'CARHR003610' => 'chi', 'CARHR006290' => 'chi', 'CARHR006430' => 'chi', 'CARHR124110' => 'chi', 'CARHR203870' => 'chi', 'CARHR203880' => 'chi', 'CARHR203890' => 'chi', 'CARHR276880' => 'chi', 'Carub.0001s0346' => 'cru', 'Carub.0001s0347' => 'cru', 'Carub.0001s0607' => 'cru', 'Carub.0003s2768' => 'cru', 'Carub.0003s2769' => 'cru', 'Carub.0004s1178' => 'cru', 'Carub.0006s0806' => 'cru', 'Carub.0006s0807' => 'cru', 'Carub.0006s0808' => 'cru', 'Carub.0008s0501' => 'cru', 'Carub.0008s2379' => 'cru', 'Ca_08655_v3' => 'car', 'Ca_08922_v3' => 'car', 'Ca_08923_v3' => 'car', 'Ca_09119_v3' => 'car', 'Ca_09703_v3' => 'car', 'Ca_09705_v3' => 'car', 'Ca_09835_v3' => 'car', 'Ca_26403_v3' => 'car', 'Ca_30719_v3' => 'car', 'CBR_g17958' => 'cbr', 'CBR_g40516' => 'cbr', 'Cc00_g05350' => 'ccan', 'Cc01_g18690' => 'ccan', 'Cc03_g04830' => 'ccan', 'Cc03_g04850' => 'ccan', 'CDE02G4469' => 'cde', 'CDE06G0883' => 'cde', 'CDE06G1295' => 'cde', 'CDE06G1390' => 'cde', 'CDE07G0584' => 'cde', 'CDE07G1084' => 'cde', 'CDE08G1259' => 'cde', 'Cfa002341' => 'cfa', 'Cfa024337' => 'cfa', 'Ciclev10004749m.g' => 'ccl', 'Ciclev10006127m.g' => 'ccl', 'Ciclev10019720m.g' => 'ccl', 'Ciclev10022652m.g' => 'ccl', 'CiPaw.01G190400' => 'cil', 'CiPaw.01G190500' => 'cil', 'CiPaw.02G116400' => 'cil', 'CiPaw.02G116500' => 'cil', 'CiPaw.04G183000' => 'cil', 'CiPaw.04G183300' => 'cil', 'ClCG05G004610' => 'cla', 'ClCG05G004620' => 'cla', 'ClCG06G006730' => 'cla', 'ClCG06G006740' => 'cla', 'ClCG11G003690' => 'cla', 'COL.COLO4_08276' => 'col', 'COL.COLO4_08277' => 'col', 'COL.COLO4_15787' => 'col', 'COL.COLO4_15789' => 'col', 'Cpa.g.c44815' => 'cpa', 'Cpa.g.sc52.144' => 'cpa', 'Cpa.g.sc58.46' => 'cpa', 'Cpa.g.sc58.47' => 'cpa', 'Cre08.g360900' => 'cre', 'CsaV3_2G013030' => 'csa', 'CsaV3_2G013050' => 'csa', 'CsaV3_2G015620' => 'csa', 'CsaV3_3G012590' => 'csa', 'CsaV3_3G012600' => 'csa', 'CSS0001641' => 'camsi', 'CSS0008310' => 'camsi', 'CSS0013011' => 'camsi', 'CSS0017147' => 'camsi', 'CSS0022970' => 'camsi', 'CSS0025655' => 'camsi', 'CSS0028665' => 'camsi', 'CSS0029117' => 'camsi', 'CSS0032024' => 'camsi', 'CSS0039681' => 'camsi', 'CSS0046516' => 'camsi', 'CSS0050307' => 'camsi', 'DCAR_005871' => 'dca', 'DCAR_007342' => 'dca', 'DCAR_024228' => 'dca', 'DCAR_027277' => 'dca', 'DCAR_030718' => 'dca', 'Dinv20287' => 'din', 'Dinv22461' => 'din', 'Dinv22464' => 'din', 'Dinv29912' => 'din', 'Dinv29913' => 'din', 'Dinv34580' => 'din', 'Dinv34582' => 'din', 'Dinv44632' => 'din', 'Duzib052G0266' => 'dzi', 'Duzib133G0907' => 'dzi', 'Duzib133G1034' => 'dzi', 'Duzib138G0207' => 'dzi', 'Duzib138G0491' => 'dzi', 'Duzib151G0812' => 'dzi', 'Duzib151G1166' => 'dzi', 'Duzib168G0192' => 'dzi', 'Duzib211G0077' => 'dzi', 'Duzib212G0429' => 'dzi', 'Duzib212G0472' => 'dzi', 'ECA233G2617' => 'eca', 'ECA236G4188' => 'eca', 'ECA240G0936' => 'eca', 'ECA240G1129' => 'eca', 'ECA247G0623' => 'eca', 'EL10Ac5g10451' => 'bvu', 'EL10Ac5g10453' => 'bvu', 'EL10Ac5g10894' => 'bvu', 'Eucgr.H00192' => 'egr', 'Eucgr.H00193' => 'egr', 'Eucgr.H00194' => 'egr', 'Eucgr.J01562' => 'egr', 'Eucgr.K03301' => 'egr', 'FAN02G0632' => 'fan', 'FAN05G5378' => 'fan', 'FAN09G3247' => 'fan', 'FAN12G0435' => 'fan', 'FAN12G2426' => 'fan', 'FAN14G1707' => 'fan', 'FAN14G4725' => 'fan', 'FAN15G2071' => 'fan', 'FAN17G3065' => 'fan', 'FAN19G1376' => 'fan', 'FAN20G0354' => 'fan', 'FAN20G2429' => 'fan', 'FAN20G2658' => 'fan', 'FAN24G2343' => 'fan', 'FAN27G2362' => 'fan', 'FAN28G1765' => 'fan', 'FvH4_1g16020' => 'fve', 'FvH4_2g04890' => 'fve', 'FvH4_2g22270' => 'fve', 'FvH4_4g02630' => 'fve', 'FvH4_4g02640' => 'fve', 'FvH4_6g02650' => 'fve', 'Glyma.02G140600' => 'gma', 'Glyma.03G159900' => 'gma', 'Glyma.05G234800' => 'gma', 'Glyma.07G269600' => 'gma', 'Glyma.08G042300' => 'gma', 'Glyma.10G033500' => 'gma', 'Glyma.10G185200' => 'gma', 'Glyma.17G004300' => 'gma', 'Glyma.19G161900' => 'gma', 'Glyma.20G205100' => 'gma', 'Glyma.20G205200' => 'gma', 'Gohir.A01G139101' => 'ghi', 'Gohir.A02G035600' => 'ghi', 'Gohir.A02G117901' => 'ghi', 'Gohir.A07G210100' => 'ghi', 'Gohir.A07G210200' => 'ghi', 'Gohir.A08G061100' => 'ghi', 'Gohir.A09G223000' => 'ghi', 'Gohir.A09G223100' => 'ghi', 'Gohir.A10G113900' => 'ghi', 'Gohir.A10G114000' => 'ghi', 'Gohir.D02G042300' => 'ghi', 'Gohir.D07G216100' => 'ghi', 'Gohir.D07G216200' => 'ghi', 'Gohir.D08G070400' => 'ghi', 'Gohir.D09G225000' => 'ghi', 'Gohir.D09G225100' => 'ghi', 'Gohir.D10G152300' => 'ghi', 'Gohir.D10G153200' => 'ghi', 'Gohir.D11G133701' => 'ghi', 'Gorai.004G074100' => 'gra', 'Gorai.005G046800' => 'gra', 'Gorai.006G246500' => 'gra', 'Gorai.006G246600' => 'gra', 'Gorai.007G142900' => 'gra', 'Gorai.011G171000' => 'gra', 'Gorai.011G171100' => 'gra', 'Gorai.013G104300' => 'gra', 'Gorai.013G104400' => 'gra', 'GSVIVG01000754001' => 'vvi', 'GSVIVG01000756001' => 'vvi', 'GSVIVG01010903001' => 'vvi', 'GSVIVG01017623001' => 'vvi', 'GSVIVG01018113001' => 'vvi', 'GSVIVG01018116001' => 'vvi', 'GSVIVG01018118001' => 'vvi', 'HanXRQChr03g0076211' => 'han', 'HanXRQChr03g0092431' => 'han', 'HanXRQChr03g0092441' => 'han', 'HanXRQChr03g0092591' => 'han', 'HanXRQChr03g0092671' => 'han', 'HanXRQChr03g0092681' => 'han', 'HanXRQChr03g0092691' => 'han', 'HanXRQChr03g0092701' => 'han', 'HanXRQChr03g0092721' => 'han', 'HanXRQChr03g0092731' => 'han', 'HanXRQChr04g0113681' => 'han', 'HanXRQChr10g0281371' => 'han', 'HanXRQChr11g0337141' => 'han', 'HanXRQChr13g0424521' => 'han', 'HanXRQChr13g0424531' => 'han', 'HanXRQChr13g0424541' => 'han', 'HanXRQChr16g0498221' => 'han', 'Haze_04377' => 'cav', 'Haze_11298' => 'cav', 'Haze_24547' => 'cav', 'Haze_24550' => 'cav', 'Haze_26587' => 'cav', 'Hma1.2p1_0650F.1_g195410' => 'hma', 'Hma1.2p1_0893F.1_g233470' => 'hma', 'HPP92_006508' => 'vpl', 'HPP92_024780' => 'vpl', 'Hund02688' => 'sun', 'Hund09380' => 'sun', 'Hund09381' => 'sun', 'Hund09832' => 'sun', 'Hund09833' => 'sun', 'Hund11351' => 'sun', 'Hund11513' => 'sun', 'Lalb_Chr06g0162591' => 'lal', 'Lalb_Chr06g0162601' => 'lal', 'Lalb_Chr06g0169321' => 'lal', 'Lalb_Chr09g0330951' => 'lal', 'Lalb_Chr16g0387631' => 'lal', 'Lalb_Chr21g0306241' => 'lal', 'Lalb_Chr25g0290051' => 'lal', 'Lalb_Chr25g0290061' => 'lal', 'Lalb_Chr25g0290071' => 'lal', 'Lj1g0003876' => 'lja', 'Lj1P1207T36' => 'lonja', 'Lj2C1156G12' => 'lonja', 'Lj3A793G39' => 'lonja', 'Lj3C580G2' => 'lonja', 'Lj3C780G2' => 'lonja', 'Lj3C780T4' => 'lonja', 'Lj3C793G9' => 'lonja', 'Lj4g0012960' => 'lja', 'Lj5g0021252' => 'lja', 'Lj5g0021484' => 'lja', 'Lj5g0024528' => 'lja', 'Lj6A399T12' => 'lonja', 'Lj6A656G65' => 'lonja', 'Lsat_1_v5_gn_3_125500' => 'lsa', 'Lsat_1_v5_gn_3_125540' => 'lsa', 'Lsat_1_v5_gn_5_72701' => 'lsa', 'Lsat_1_v5_gn_8_91560' => 'lsa', 'Lsat_1_v5_gn_9_9640' => 'lsa', 'Manes.01G200600' => 'mes', 'Manes.01G200700' => 'mes', 'Manes.03G168900' => 'mes', 'Manes.03G169000' => 'mes', 'Manes.05G085801' => 'mes', 'Manes.05G086200' => 'mes', 'Manes.15G036700' => 'mes', 'Manes.15G036900' => 'mes', 'Mapoly0004s0172' => 'mpo', 'Mapoly0023s0001' => 'mpo', 'Mapoly0142s0012' => 'mpo', 'MBI01_g32854_MAGBIO' => 'mbi', 'MBI11_g24427_MAGBIO' => 'mbi', 'MBI11_g47319_MAGBIO' => 'mbi', 'MCO01G433' => 'mco', 'MD00G1187800' => 'mdo', 'MD04G1226500' => 'mdo', 'MD05G1203900' => 'mdo', 'MD10G1191100' => 'mdo', 'MD12G1243500' => 'mdo', 'MD13G1207000' => 'mdo', 'MD13G1207100' => 'mdo', 'MD16G1208600' => 'mdo', 'Medtr1g050352' => 'mtr', 'Medtr1g070385' => 'mtr', 'Medtr1g070450' => 'mtr', 'Medtr1g075200' => 'mtr', 'Medtr1g075250' => 'mtr', 'Medtr1g075260' => 'mtr', 'Medtr1g475250' => 'mtr', 'Medtr4g075450' => 'mtr', 'Medtr7g096300' => 'mtr', 'Medtr8g105110' => 'mtr', 'MELO3C006470.2' => 'cme', 'MELO3C006471.2' => 'cme', 'MELO3C020772.2' => 'cme', 'MELO3C026780.2' => 'cme', 'MELO3C026781.2' => 'cme', 'Migut.D00390' => 'egut', 'Migut.G00435' => 'egut', 'Migut.G00436' => 'egut', 'Migut.G00718' => 'egut', 'MSTRG.21891' => 'ama', 'MSTRG.26910' => 'ama', 'MSTRG.4099' => 'ama', 'MSTRG.9925' => 'ama', 'Nitab4.5_0000165g0010' => 'nta', 'Nitab4.5_0000209g0180' => 'nta', 'Nitab4.5_0000244g0440' => 'nta', 'Nitab4.5_0000525g0220' => 'nta', 'Nitab4.5_0001597g0020' => 'nta', 'Nitab4.5_0001878g0040' => 'nta', 'Nitab4.5_0001878g0060' => 'nta', 'Nitab4.5_0002838g0100' => 'nta', 'Nitab4.5_0002838g0120' => 'nta', 'Nitab4.5_0004798g0030' => 'nta', 'Nitab4.5_0005420g0010' => 'nta', 'Nitab4.5_0005507g0010' => 'nta', 'Nitab4.5_0005574g0020' => 'nta', 'Nitab4.5_0005838g0010' => 'nta', 'Nitab4.5_0010580g0020' => 'nta', 'Nn1g02599' => 'nnu', 'Nn1g02608' => 'nnu', 'Nn3g17742' => 'nnu', 'Nn3g19534' => 'nnu', 'Nn3g19535' => 'nnu', 'Oeu008790.1' => 'oeu', 'Oeu008792.1' => 'oeu', 'Oeu032590.1' => 'oeu', 'Oeu035349.1' => 'oeu', 'Oeu049791.1' => 'oeu', 'Os01g0774500' => 'osa', 'Os03g0628800' => 'osa', 'Os03g0798600' => 'osa', 'Os05g0508800' => 'osa', 'Peaxi162Scf00036g02018' => 'pax', 'Peaxi162Scf00578g00032' => 'pax', 'Peaxi162Scf00578g00317' => 'pax', 'Peaxi162Scf00785g00114' => 'pax', 'Peaxi162Scf00813g00119' => 'pax', 'Peaxi162Scf00906g00227' => 'pax', 'PGR004G0875' => 'pgr', 'PGR004G2424' => 'pgr', 'PGR031G1239' => 'pgr', 'PGR031G2474' => 'pgr', 'PGR044G0423' => 'pgr', 'PGSC0003DMG400001128' => 'stu', 'PGSC0003DMG400007336' => 'stu', 'PGSC0003DMG400016318' => 'stu', 'PGSC0003DMG400016319' => 'stu', 'PGSC0003DMG400018074' => 'stu', 'Phvul.001G157700' => 'pvu', 'Phvul.002G148550' => 'pvu', 'Phvul.002G320200' => 'pvu', 'Phvul.003G089200' => 'pvu', 'Phvul.007G126000' => 'pvu', 'Phvul.007G126100' => 'pvu', 'Phvul.007G178000' => 'pvu', 'Phvul.007G178200' => 'pvu', 'Potri.002G043000' => 'ptr', 'Potri.002G043200' => 'ptr', 'Potri.003G123750' => 'ptr', 'Potri.005G055401' => 'ptr', 'Potri.005G219700' => 'ptr', 'Potri.005G220000' => 'ptr', 'Potri.008G161901' => 'ptr', 'Potri.008G162000' => 'ptr', 'Potri.008G162400' => 'ptr', 'Potri.010G076900' => 'ptr', 'Pp3c12_9180' => 'ppa', 'Pp3c13_19770' => 'ppa', 'Pp3c14_22950' => 'ppa', 'Pp3c16_12160' => 'ppa', 'Pp3c27_7820' => 'ppa', 'Pp3c2_3490' => 'ppa', 'Pp3c3_23700' => 'ppa', 'Pp3c3_36520' => 'ppa', 'Pp3c4_15250' => 'ppa', 'PRCOL_00007002' => 'pco', 'Prupe.1G030600' => 'ppe', 'Prupe.1G030700' => 'ppe', 'Prupe.6G345200' => 'ppe', 'Prupe.8G230300' => 'ppe', 'Prupe.8G230500' => 'ppe', 'Psat3g059600' => 'psa', 'Psat5g200920' => 'psa', 'Psat6g056440' => 'psa', 'Psat6g057360' => 'psa', 'Psat6g134120' => 'psa', 'Psat6g134160' => 'psa', 'Psat7g008640' => 'psa', 'Psat7g185240' => 'psa', 'PSO017G1330' => 'pso', 'PSO063G6097' => 'pso', 'PSO170G0835' => 'pso', 'PSO170G2499' => 'pso', 'PSO210G5058' => 'pso', 'PSO210G6154' => 'pso', 'PSO585G0031' => 'pso', 'PSO832G0264' => 'pso', 'PSO832G4288' => 'pso', 'QL03p027355' => 'qlo', 'QL03p027430' => 'qlo', 'QL04p081380' => 'qlo', 'QL06p015642' => 'qlo', 'QL06p015650' => 'qlo', 'QL06p015686' => 'qlo', 'QL12p042927' => 'qlo', 'QL93p1863_0035' => 'qlo', 'RcHm_v2.0_Chr3g0450581' => 'rch', 'RcHm_v2.0_Chr4g0390371' => 'rch', 'RcHm_v2.0_Chr4g0390381' => 'rch', 'RcHm_v2.0_Chr4g0390491' => 'rch', 'RcHm_v2.0_Chr4g0390501' => 'rch', 'RcHm_v2.0_Chr6g0289231' => 'rch', 'Rhsim04G0190400' => 'rsi', 'Rhsim04G0190500' => 'rsi', 'Rhsim04G0190600' => 'rsi', 'Rhsim13G0031400' => 'rsi', 'Rhsim13G0165600' => 'rsi', 'RhsimUnG0114600' => 'rsi', 'RhsimUnG0114700' => 'rsi', 'Sabra02G0034800' => 'sbr', 'Sabra02G0035100' => 'sbr', 'Sabra05G0168600' => 'sbr', 'Sabra05G0168800' => 'sbr', 'Sabra08G0123700' => 'sbr', 'Sabra10G0031900' => 'sbr', 'Sabra13G0039000' => 'sbr', 'SalBow2G0782' => 'sbo', 'SalBow2G1403' => 'sbo', 'SalBow4G0074' => 'sbo', 'SalBow4G2635' => 'sbo', 'SalBow5G3010' => 'sbo', 'Sc05g0000870' => 'sci', 'Sc05g0000890' => 'sci', 'Sc13g0005000' => 'sci', 'Sc13g0005030' => 'sci', 'Sc19g0003790' => 'sci', 'Sc19g0003800' => 'sci', 'Sed0003467' => 'sed', 'Sed0009355' => 'sed', 'Sed0009894' => 'sed', 'Sed0011972' => 'sed', 'Sed0021483' => 'sed', 'Sed0021750' => 'sed', 'Sed0026279' => 'sed', 'SEGI_05312' => 'sgi', 'SEGI_10112' => 'sgi', 'SEGI_15835' => 'sgi', 'SEGI_30386' => 'sgi', 'SEGI_34122' => 'sgi', 'SEGI_35063' => 'sgi', 'SGA_v2.0_scaffold101G29794' => 'sas', 'SGA_v2.0_scaffold1G00573' => 'sas', 'SGA_v2.0_scaffold79G25637' => 'sas', 'SGA_v2.0_scaffold88G27283' => 'sas', 'SGA_v2.0_scaffold88G27285' => 'sas', 'SGA_v2.0_scaffold88G27331' => 'sas', 'SHI09937' => 'shi', 'SMO119G0302' => 'smo', 'SMO137G0231' => 'smo', 'SMO367G1151' => 'smo', 'Solyc02g082000.3' => 'sly', 'Solyc06g031670.3' => 'sly', 'Solyc06g053810.3' => 'sly', 'Solyc07g025457.1' => 'sly', 'Solyc08g059740.1' => 'sly', 'Solyc08g059750.3' => 'sly', 'Solyc09g083370.3' => 'sly', 'Solyc12g038950.3' => 'sly', 'Sopen02g026630' => 'spe', 'Sopen06g018930' => 'spe', 'Sopen06g018940' => 'spe', 'Sopen08g009460' => 'spe', 'Sopen09g032290' => 'spe', 'Sp1g03080' => 'spa', 'Sp1g03090' => 'spa', 'Sp1g05480' => 'spa', 'Sp2g07860' => 'spa', 'Sp2g08430' => 'spa', 'Sp2g08440' => 'spa', 'Sp2g26200' => 'spa', 'Sp4g13170' => 'spa', 'Sp6g33840' => 'spa', 'SpUn1204_0010' => 'spa', 'TAR365G0908' => 'tar', 'TAR381G1270' => 'tar', 'TAR381G1651' => 'tar', 'TAR625G1131' => 'tar', 'TAR633G0962' => 'tar', 'TAR633G1729' => 'tar', 'TAR633G1864' => 'tar', 'TAR636G0221' => 'tar', 'TAR636G0314' => 'tar', 'TAR636G3202' => 'tar', 'THA.LOC104800805' => 'tha', 'THA.LOC104801096' => 'tha', 'THA.LOC104801555' => 'tha', 'THA.LOC104808491' => 'tha', 'THA.LOC104808595' => 'tha', 'THA.LOC104815985' => 'tha', 'THA.LOC104822250' => 'tha', 'THA.LOC104826071' => 'tha', 'Thecc.01G265200' => 'tca', 'Thecc.01G265300' => 'tca', 'Thecc.01G265700' => 'tca', 'Thecc.03G109100' => 'tca', 'Thecc.04G245900' => 'tca', 'Thecc.04G246000' => 'tca', 'Thhalv10003334m.g' => 'esa', 'Thhalv10005508m.g' => 'esa', 'Thhalv10005643m.g' => 'esa', 'Thhalv10007316m.g' => 'esa', 'Thhalv10009006m.g' => 'esa', 'Thhalv10009309m.g' => 'esa', 'Thhalv10014917m.g' => 'esa', 'Thhalv10014919m.g' => 'esa', 'Thhalv10015393m.g' => 'esa', 'Thhalv10016515m.g' => 'esa', 'Thhalv10029242m.g' => 'esa', 'TPR.G16654' => 'tpr', 'TPR.G20589' => 'tpr', 'TPR.G23029' => 'tpr', 'TPR.G27731' => 'tpr', 'TPR.G28889' => 'tpr', 'TPR.G28899' => 'tpr', 'TPR.G30846' => 'tpr', 'TPR.G5452' => 'tpr', 'TPR.G5713' => 'tpr', 'TPR.G9046' => 'tpr', 'TPR.G9061' => 'tpr', 'TWI09G1075' => 'twi', 'TWI12G0806' => 'twi', 'TWI18G0108' => 'twi', 'TWI53G1361' => 'twi', 'TWI73G0185' => 'twi', 'TWI73G0427' => 'twi', 'unitig_37.g12001' => 'ugi', 'unitig_747.g21660' => 'ugi', 'unitig_748.g7232' => 'ugi', 'unitig_748.g7315' => 'ugi', 'unitig_85.g27262' => 'ugi', 'unitig_92.g28220' => 'ugi', 'vmacro02632' => 'vma', 'vmacro08410' => 'vma', 'vmacro08411' => 'vma', 'vmacro15407' => 'vma', 'VMungo0251G3619' => 'vmu', 'VMungo0720G1204' => 'vmu', 'VMungo0720G1918' => 'vmu', 'VMungo0720G2387' => 'vmu', 'VMungo0720G2961' => 'vmu', 'VMungo1215G2154' => 'vmu', 'VMungo1383G2411' => 'vmu', 'Zm00001eb051130' => 'zma', 'Zm00001eb116830' => 'zma', 'Zm00001eb116850' => 'zma', 'Zm00001eb151740' => 'zma', 'Zm00001eb292360' => 'zma', 'Zm00001eb301640' => 'zma' ), 'gf_id' => 'HOM05D000856', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000856' ), 'data_identifier' => 'HOM05D000856', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000856', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p00010' => 'bna', 'A03p04160' => 'bna', 'A03p17160' => 'bna', 'A04p23370' => 'bna', 'A05p14860' => 'bna', 'A08p37020' => 'bna', 'A09p08050' => 'bna', 'A09p66800' => 'bna', 'A09p67940' => 'bna', 'A10p02680' => 'bna', 'A10p05320' => 'bna', 'Aa31LG1G20560' => 'aar', 'Aa31LG1G20610' => 'aar', 'Aa31LG1G7810' => 'aar', 'Aa31LG5G3590' => 'aar', 'Aa31LG5G6140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3819' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4683' => 'aag', 'Actinidia04480' => 'ach', 'Actinidia05466' => 'ach', 'Actinidia08445' => 'ach', 'Actinidia21170' => 'ach', 'Actinidia24812' => 'ach', 'Actinidia24951' => 'ach', 'Actinidia40088' => 'ach', 'Ah.02g111660' => 'amhyb', 'Ah.11g048900' => 'amhyb', 'Ah.11g049910' => 'amhyb', 'AL1G13870' => 'aly', 'AL1G13880' => 'aly', 'AL1G16760' => 'aly', 'AL390U10020' => 'aly', 'AL4G25520' => 'aly', 'AL6G19890' => 'aly', 'AL6G19900' => 'aly', 'AL6G19910' => 'aly', 'AL8G40100' => 'aly', 'Aqoxy2G03562' => 'aox', 'Aqoxy5G00316' => 'aox', 'Aqoxy5G00926' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1628KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1H403S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2FU6SJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.882I6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8YRY2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YN1SN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AF70II' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZA8L1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F916KL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHRD8H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KTZ8QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S22EMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8M29T' => 'arhy', 'AT1G04270' => 'ath', 'AT1G04280' => 'ath', 'AT1G06750' => 'ath', 'AT1G33850' => 'ath', 'AT2G30630' => 'ath', 'AT5G09490' => 'ath', 'AT5G09500' => 'ath', 'AT5G09510' => 'ath', 'AT5G43640' => 'ath', 'AT5G63070' => 'ath', 'ATR0605G315' => 'atr', 'Atru.chr11.175' => 'acertr', 'Atru.chr11.653' => 'acertr', 'Atru.chr3.1616' => 'acertr', 'Atru.chr4.2230' => 'acertr', 'Atru.chr4.2232' => 'acertr', 'Atru.chr5.1598' => 'acertr', 'Atru.chr5.1600' => 'acertr', 'Atru.chr5.2188' => 'acertr', 'AUR62008326' => 'cqu', 'AUR62011922' => 'cqu', 'AUR62011924' => 'cqu', 'AUR62021771' => 'cqu', 'AUR62032237' => 'cqu', 'AUR62032240' => 'cqu', 'BcaB01g05572' => 'bca', 'BcaB02g10337' => 'bca', 'BcaB04g19944' => 'bca', 'BcaB05g21548' => 'bca', 'BcaB05g21549' => 'bca', 'BcaB05g23227' => 'bca', 'BcaB06g26256' => 'bca', 'BcaB06g26257' => 'bca', 'BcaB06g28379' => 'bca', 'BcaC02g11159' => 'bca', 'BcaC03g13258' => 'bca', 'BcaC03g13259' => 'bca', 'BcaC05g24456' => 'bca', 'BcaC05g24457' => 'bca', 'BcaC07g36922' => 'bca', 'BcaC07g36923' => 'bca', 'BcaC07g42050' => 'bca', 'BcaC07g42176' => 'bca', 'BcaC07g42195' => 'bca', 'BcaC07g42196' => 'bca', 'BcaNung06674' => 'bca', 'BolC2t06351H' => 'bol', 'BolC2t06352H' => 'bol', 'BolC3t12993H' => 'bol', 'BolC4t23525H' => 'bol', 'BolC4t27475H' => 'bol', 'BolC5t29025H' => 'bol', 'BolC5t29026H' => 'bol', 'BolC8t46898H' => 'bol', 'BolC8t46899H' => 'bol', 'BolC8t52630H' => 'bol', 'BolC8t52765H' => 'bol', 'BolC9t53824H' => 'bol', 'BraA03t09760Z' => 'bra', 'BraA03t10990Z' => 'bra', 'BraA05t20413Z' => 'bra', 'BraA08t35602Z' => 'bra', 'BraA09t36458Z' => 'bra', 'BraA09t42018Z' => 'bra', 'BraA09t42129Z' => 'bra', 'BraA10t42536Z' => 'bra', 'BraA10t42537Z' => 'bra', 'C01p10690' => 'bna', 'C02p03890' => 'bna', 'C02p03900' => 'bna', 'C03p04620' => 'bna', 'C04p19870' => 'bna', 'C04p59670' => 'bna', 'C05p02460' => 'bna', 'C05p02470' => 'bna', 'C08p00980' => 'bna', 'C08p00990' => 'bna', 'C08p51030' => 'bna', 'C08p52360' => 'bna', 'C09p09120' => 'bna', 'CAN.G19.15' => 'can', 'CAN.G251.10' => 'can', 'CAN.G251.9' => 'can', 'CAN.G398.24' => 'can', 'CAN.G410.32' => 'can', 'CAN.G881.2' => 'can', 'CANSAT01G3025' => 'cansat', 'CANSAT78G1211' => 'cansat', 'CANSAT78G1218' => 'cansat', 'CANSAT78G1521' => 'cansat', 'CANSAT78G1670' => 'cansat', 'CARHR003600' => 'chi', 'CARHR003610' => 'chi', 'CARHR006290' => 'chi', 'CARHR006430' => 'chi', 'CARHR124110' => 'chi', 'CARHR203870' => 'chi', 'CARHR203880' => 'chi', 'CARHR203890' => 'chi', 'CARHR276880' => 'chi', 'Carub.0001s0346' => 'cru', 'Carub.0001s0347' => 'cru', 'Carub.0001s0607' => 'cru', 'Carub.0003s2768' => 'cru', 'Carub.0003s2769' => 'cru', 'Carub.0004s1178' => 'cru', 'Carub.0006s0806' => 'cru', 'Carub.0006s0807' => 'cru', 'Carub.0006s0808' => 'cru', 'Carub.0008s0501' => 'cru', 'Carub.0008s2379' => 'cru', 'Ca_08655_v3' => 'car', 'Ca_08922_v3' => 'car', 'Ca_08923_v3' => 'car', 'Ca_09119_v3' => 'car', 'Ca_09703_v3' => 'car', 'Ca_09705_v3' => 'car', 'Ca_09835_v3' => 'car', 'Ca_26403_v3' => 'car', 'Ca_30719_v3' => 'car', 'CBR_g17958' => 'cbr', 'CBR_g40516' => 'cbr', 'Cc00_g05350' => 'ccan', 'Cc01_g18690' => 'ccan', 'Cc03_g04830' => 'ccan', 'Cc03_g04850' => 'ccan', 'CDE02G4469' => 'cde', 'CDE06G0883' => 'cde', 'CDE06G1295' => 'cde', 'CDE06G1390' => 'cde', 'CDE07G0584' => 'cde', 'CDE07G1084' => 'cde', 'CDE08G1259' => 'cde', 'Cfa002341' => 'cfa', 'Cfa024337' => 'cfa', 'Ciclev10004749m.g' => 'ccl', 'Ciclev10006127m.g' => 'ccl', 'Ciclev10019720m.g' => 'ccl', 'Ciclev10022652m.g' => 'ccl', 'CiPaw.01G190400' => 'cil', 'CiPaw.01G190500' => 'cil', 'CiPaw.02G116400' => 'cil', 'CiPaw.02G116500' => 'cil', 'CiPaw.04G183000' => 'cil', 'CiPaw.04G183300' => 'cil', 'ClCG05G004610' => 'cla', 'ClCG05G004620' => 'cla', 'ClCG06G006730' => 'cla', 'ClCG06G006740' => 'cla', 'ClCG11G003690' => 'cla', 'COL.COLO4_08276' => 'col', 'COL.COLO4_08277' => 'col', 'COL.COLO4_15787' => 'col', 'COL.COLO4_15789' => 'col', 'Cpa.g.c44815' => 'cpa', 'Cpa.g.sc52.144' => 'cpa', 'Cpa.g.sc58.46' => 'cpa', 'Cpa.g.sc58.47' => 'cpa', 'Cre08.g360900' => 'cre', 'CsaV3_2G013030' => 'csa', 'CsaV3_2G013050' => 'csa', 'CsaV3_2G015620' => 'csa', 'CsaV3_3G012590' => 'csa', 'CsaV3_3G012600' => 'csa', 'CSS0001641' => 'camsi', 'CSS0008310' => 'camsi', 'CSS0013011' => 'camsi', 'CSS0017147' => 'camsi', 'CSS0022970' => 'camsi', 'CSS0025655' => 'camsi', 'CSS0028665' => 'camsi', 'CSS0029117' => 'camsi', 'CSS0032024' => 'camsi', 'CSS0039681' => 'camsi', 'CSS0046516' => 'camsi', 'CSS0050307' => 'camsi', 'DCAR_005871' => 'dca', 'DCAR_007342' => 'dca', 'DCAR_024228' => 'dca', 'DCAR_027277' => 'dca', 'DCAR_030718' => 'dca', 'Dinv20287' => 'din', 'Dinv22461' => 'din', 'Dinv22464' => 'din', 'Dinv29912' => 'din', 'Dinv29913' => 'din', 'Dinv34580' => 'din', 'Dinv34582' => 'din', 'Dinv44632' => 'din', 'Duzib052G0266' => 'dzi', 'Duzib133G0907' => 'dzi', 'Duzib133G1034' => 'dzi', 'Duzib138G0207' => 'dzi', 'Duzib138G0491' => 'dzi', 'Duzib151G0812' => 'dzi', 'Duzib151G1166' => 'dzi', 'Duzib168G0192' => 'dzi', 'Duzib211G0077' => 'dzi', 'Duzib212G0429' => 'dzi', 'Duzib212G0472' => 'dzi', 'ECA233G2617' => 'eca', 'ECA236G4188' => 'eca', 'ECA240G0936' => 'eca', 'ECA240G1129' => 'eca', 'ECA247G0623' => 'eca', 'EL10Ac5g10451' => 'bvu', 'EL10Ac5g10453' => 'bvu', 'EL10Ac5g10894' => 'bvu', 'Eucgr.H00192' => 'egr', 'Eucgr.H00193' => 'egr', 'Eucgr.H00194' => 'egr', 'Eucgr.J01562' => 'egr', 'Eucgr.K03301' => 'egr', 'FAN02G0632' => 'fan', 'FAN05G5378' => 'fan', 'FAN09G3247' => 'fan', 'FAN12G0435' => 'fan', 'FAN12G2426' => 'fan', 'FAN14G1707' => 'fan', 'FAN14G4725' => 'fan', 'FAN15G2071' => 'fan', 'FAN17G3065' => 'fan', 'FAN19G1376' => 'fan', 'FAN20G0354' => 'fan', 'FAN20G2429' => 'fan', 'FAN20G2658' => 'fan', 'FAN24G2343' => 'fan', 'FAN27G2362' => 'fan', 'FAN28G1765' => 'fan', 'FvH4_1g16020' => 'fve', 'FvH4_2g04890' => 'fve', 'FvH4_2g22270' => 'fve', 'FvH4_4g02630' => 'fve', 'FvH4_4g02640' => 'fve', 'FvH4_6g02650' => 'fve', 'Glyma.02G140600' => 'gma', 'Glyma.03G159900' => 'gma', 'Glyma.05G234800' => 'gma', 'Glyma.07G269600' => 'gma', 'Glyma.08G042300' => 'gma', 'Glyma.10G033500' => 'gma', 'Glyma.10G185200' => 'gma', 'Glyma.17G004300' => 'gma', 'Glyma.19G161900' => 'gma', 'Glyma.20G205100' => 'gma', 'Glyma.20G205200' => 'gma', 'Gohir.A01G139101' => 'ghi', 'Gohir.A02G035600' => 'ghi', 'Gohir.A02G117901' => 'ghi', 'Gohir.A07G210100' => 'ghi', 'Gohir.A07G210200' => 'ghi', 'Gohir.A08G061100' => 'ghi', 'Gohir.A09G223000' => 'ghi', 'Gohir.A09G223100' => 'ghi', 'Gohir.A10G113900' => 'ghi', 'Gohir.A10G114000' => 'ghi', 'Gohir.D02G042300' => 'ghi', 'Gohir.D07G216100' => 'ghi', 'Gohir.D07G216200' => 'ghi', 'Gohir.D08G070400' => 'ghi', 'Gohir.D09G225000' => 'ghi', 'Gohir.D09G225100' => 'ghi', 'Gohir.D10G152300' => 'ghi', 'Gohir.D10G153200' => 'ghi', 'Gohir.D11G133701' => 'ghi', 'Gorai.004G074100' => 'gra', 'Gorai.005G046800' => 'gra', 'Gorai.006G246500' => 'gra', 'Gorai.006G246600' => 'gra', 'Gorai.007G142900' => 'gra', 'Gorai.011G171000' => 'gra', 'Gorai.011G171100' => 'gra', 'Gorai.013G104300' => 'gra', 'Gorai.013G104400' => 'gra', 'GSVIVG01000754001' => 'vvi', 'GSVIVG01000756001' => 'vvi', 'GSVIVG01010903001' => 'vvi', 'GSVIVG01017623001' => 'vvi', 'GSVIVG01018113001' => 'vvi', 'GSVIVG01018116001' => 'vvi', 'GSVIVG01018118001' => 'vvi', 'HanXRQChr03g0076211' => 'han', 'HanXRQChr03g0092431' => 'han', 'HanXRQChr03g0092441' => 'han', 'HanXRQChr03g0092591' => 'han', 'HanXRQChr03g0092671' => 'han', 'HanXRQChr03g0092681' => 'han', 'HanXRQChr03g0092691' => 'han', 'HanXRQChr03g0092701' => 'han', 'HanXRQChr03g0092721' => 'han', 'HanXRQChr03g0092731' => 'han', 'HanXRQChr04g0113681' => 'han', 'HanXRQChr10g0281371' => 'han', 'HanXRQChr11g0337141' => 'han', 'HanXRQChr13g0424521' => 'han', 'HanXRQChr13g0424531' => 'han', 'HanXRQChr13g0424541' => 'han', 'HanXRQChr16g0498221' => 'han', 'Haze_04377' => 'cav', 'Haze_11298' => 'cav', 'Haze_24547' => 'cav', 'Haze_24550' => 'cav', 'Haze_26587' => 'cav', 'Hma1.2p1_0650F.1_g195410' => 'hma', 'Hma1.2p1_0893F.1_g233470' => 'hma', 'HPP92_006508' => 'vpl', 'HPP92_024780' => 'vpl', 'Hund02688' => 'sun', 'Hund09380' => 'sun', 'Hund09381' => 'sun', 'Hund09832' => 'sun', 'Hund09833' => 'sun', 'Hund11351' => 'sun', 'Hund11513' => 'sun', 'Lalb_Chr06g0162591' => 'lal', 'Lalb_Chr06g0162601' => 'lal', 'Lalb_Chr06g0169321' => 'lal', 'Lalb_Chr09g0330951' => 'lal', 'Lalb_Chr16g0387631' => 'lal', 'Lalb_Chr21g0306241' => 'lal', 'Lalb_Chr25g0290051' => 'lal', 'Lalb_Chr25g0290061' => 'lal', 'Lalb_Chr25g0290071' => 'lal', 'Lj1g0003876' => 'lja', 'Lj1P1207T36' => 'lonja', 'Lj2C1156G12' => 'lonja', 'Lj3A793G39' => 'lonja', 'Lj3C580G2' => 'lonja', 'Lj3C780G2' => 'lonja', 'Lj3C780T4' => 'lonja', 'Lj3C793G9' => 'lonja', 'Lj4g0012960' => 'lja', 'Lj5g0021252' => 'lja', 'Lj5g0021484' => 'lja', 'Lj5g0024528' => 'lja', 'Lj6A399T12' => 'lonja', 'Lj6A656G65' => 'lonja', 'Lsat_1_v5_gn_3_125500' => 'lsa', 'Lsat_1_v5_gn_3_125540' => 'lsa', 'Lsat_1_v5_gn_5_72701' => 'lsa', 'Lsat_1_v5_gn_8_91560' => 'lsa', 'Lsat_1_v5_gn_9_9640' => 'lsa', 'Manes.01G200600' => 'mes', 'Manes.01G200700' => 'mes', 'Manes.03G168900' => 'mes', 'Manes.03G169000' => 'mes', 'Manes.05G085801' => 'mes', 'Manes.05G086200' => 'mes', 'Manes.15G036700' => 'mes', 'Manes.15G036900' => 'mes', 'Mapoly0004s0172' => 'mpo', 'Mapoly0023s0001' => 'mpo', 'Mapoly0142s0012' => 'mpo', 'MBI01_g32854_MAGBIO' => 'mbi', 'MBI11_g24427_MAGBIO' => 'mbi', 'MBI11_g47319_MAGBIO' => 'mbi', 'MCO01G433' => 'mco', 'MD00G1187800' => 'mdo', 'MD04G1226500' => 'mdo', 'MD05G1203900' => 'mdo', 'MD10G1191100' => 'mdo', 'MD12G1243500' => 'mdo', 'MD13G1207000' => 'mdo', 'MD13G1207100' => 'mdo', 'MD16G1208600' => 'mdo', 'Medtr1g050352' => 'mtr', 'Medtr1g070385' => 'mtr', 'Medtr1g070450' => 'mtr', 'Medtr1g075200' => 'mtr', 'Medtr1g075250' => 'mtr', 'Medtr1g075260' => 'mtr', 'Medtr1g475250' => 'mtr', 'Medtr4g075450' => 'mtr', 'Medtr7g096300' => 'mtr', 'Medtr8g105110' => 'mtr', 'MELO3C006470.2' => 'cme', 'MELO3C006471.2' => 'cme', 'MELO3C020772.2' => 'cme', 'MELO3C026780.2' => 'cme', 'MELO3C026781.2' => 'cme', 'Migut.D00390' => 'egut', 'Migut.G00435' => 'egut', 'Migut.G00436' => 'egut', 'Migut.G00718' => 'egut', 'MSTRG.21891' => 'ama', 'MSTRG.26910' => 'ama', 'MSTRG.4099' => 'ama', 'MSTRG.9925' => 'ama', 'Nitab4.5_0000165g0010' => 'nta', 'Nitab4.5_0000209g0180' => 'nta', 'Nitab4.5_0000244g0440' => 'nta', 'Nitab4.5_0000525g0220' => 'nta', 'Nitab4.5_0001597g0020' => 'nta', 'Nitab4.5_0001878g0040' => 'nta', 'Nitab4.5_0001878g0060' => 'nta', 'Nitab4.5_0002838g0100' => 'nta', 'Nitab4.5_0002838g0120' => 'nta', 'Nitab4.5_0004798g0030' => 'nta', 'Nitab4.5_0005420g0010' => 'nta', 'Nitab4.5_0005507g0010' => 'nta', 'Nitab4.5_0005574g0020' => 'nta', 'Nitab4.5_0005838g0010' => 'nta', 'Nitab4.5_0010580g0020' => 'nta', 'Nn1g02599' => 'nnu', 'Nn1g02608' => 'nnu', 'Nn3g17742' => 'nnu', 'Nn3g19534' => 'nnu', 'Nn3g19535' => 'nnu', 'Oeu008790.1' => 'oeu', 'Oeu008792.1' => 'oeu', 'Oeu032590.1' => 'oeu', 'Oeu035349.1' => 'oeu', 'Oeu049791.1' => 'oeu', 'Os01g0774500' => 'osa', 'Os03g0628800' => 'osa', 'Os03g0798600' => 'osa', 'Os05g0508800' => 'osa', 'Peaxi162Scf00036g02018' => 'pax', 'Peaxi162Scf00578g00032' => 'pax', 'Peaxi162Scf00578g00317' => 'pax', 'Peaxi162Scf00785g00114' => 'pax', 'Peaxi162Scf00813g00119' => 'pax', 'Peaxi162Scf00906g00227' => 'pax', 'PGR004G0875' => 'pgr', 'PGR004G2424' => 'pgr', 'PGR031G1239' => 'pgr', 'PGR031G2474' => 'pgr', 'PGR044G0423' => 'pgr', 'PGSC0003DMG400001128' => 'stu', 'PGSC0003DMG400007336' => 'stu', 'PGSC0003DMG400016318' => 'stu', 'PGSC0003DMG400016319' => 'stu', 'PGSC0003DMG400018074' => 'stu', 'Phvul.001G157700' => 'pvu', 'Phvul.002G148550' => 'pvu', 'Phvul.002G320200' => 'pvu', 'Phvul.003G089200' => 'pvu', 'Phvul.007G126000' => 'pvu', 'Phvul.007G126100' => 'pvu', 'Phvul.007G178000' => 'pvu', 'Phvul.007G178200' => 'pvu', 'Potri.002G043000' => 'ptr', 'Potri.002G043200' => 'ptr', 'Potri.003G123750' => 'ptr', 'Potri.005G055401' => 'ptr', 'Potri.005G219700' => 'ptr', 'Potri.005G220000' => 'ptr', 'Potri.008G161901' => 'ptr', 'Potri.008G162000' => 'ptr', 'Potri.008G162400' => 'ptr', 'Potri.010G076900' => 'ptr', 'Pp3c12_9180' => 'ppa', 'Pp3c13_19770' => 'ppa', 'Pp3c14_22950' => 'ppa', 'Pp3c16_12160' => 'ppa', 'Pp3c27_7820' => 'ppa', 'Pp3c2_3490' => 'ppa', 'Pp3c3_23700' => 'ppa', 'Pp3c3_36520' => 'ppa', 'Pp3c4_15250' => 'ppa', 'PRCOL_00007002' => 'pco', 'Prupe.1G030600' => 'ppe', 'Prupe.1G030700' => 'ppe', 'Prupe.6G345200' => 'ppe', 'Prupe.8G230300' => 'ppe', 'Prupe.8G230500' => 'ppe', 'Psat3g059600' => 'psa', 'Psat5g200920' => 'psa', 'Psat6g056440' => 'psa', 'Psat6g057360' => 'psa', 'Psat6g134120' => 'psa', 'Psat6g134160' => 'psa', 'Psat7g008640' => 'psa', 'Psat7g185240' => 'psa', 'PSO017G1330' => 'pso', 'PSO063G6097' => 'pso', 'PSO170G0835' => 'pso', 'PSO170G2499' => 'pso', 'PSO210G5058' => 'pso', 'PSO210G6154' => 'pso', 'PSO585G0031' => 'pso', 'PSO832G0264' => 'pso', 'PSO832G4288' => 'pso', 'QL03p027355' => 'qlo', 'QL03p027430' => 'qlo', 'QL04p081380' => 'qlo', 'QL06p015642' => 'qlo', 'QL06p015650' => 'qlo', 'QL06p015686' => 'qlo', 'QL12p042927' => 'qlo', 'QL93p1863_0035' => 'qlo', 'RcHm_v2.0_Chr3g0450581' => 'rch', 'RcHm_v2.0_Chr4g0390371' => 'rch', 'RcHm_v2.0_Chr4g0390381' => 'rch', 'RcHm_v2.0_Chr4g0390491' => 'rch', 'RcHm_v2.0_Chr4g0390501' => 'rch', 'RcHm_v2.0_Chr6g0289231' => 'rch', 'Rhsim04G0190400' => 'rsi', 'Rhsim04G0190500' => 'rsi', 'Rhsim04G0190600' => 'rsi', 'Rhsim13G0031400' => 'rsi', 'Rhsim13G0165600' => 'rsi', 'RhsimUnG0114600' => 'rsi', 'RhsimUnG0114700' => 'rsi', 'Sabra02G0034800' => 'sbr', 'Sabra02G0035100' => 'sbr', 'Sabra05G0168600' => 'sbr', 'Sabra05G0168800' => 'sbr', 'Sabra08G0123700' => 'sbr', 'Sabra10G0031900' => 'sbr', 'Sabra13G0039000' => 'sbr', 'SalBow2G0782' => 'sbo', 'SalBow2G1403' => 'sbo', 'SalBow4G0074' => 'sbo', 'SalBow4G2635' => 'sbo', 'SalBow5G3010' => 'sbo', 'Sc05g0000870' => 'sci', 'Sc05g0000890' => 'sci', 'Sc13g0005000' => 'sci', 'Sc13g0005030' => 'sci', 'Sc19g0003790' => 'sci', 'Sc19g0003800' => 'sci', 'Sed0003467' => 'sed', 'Sed0009355' => 'sed', 'Sed0009894' => 'sed', 'Sed0011972' => 'sed', 'Sed0021483' => 'sed', 'Sed0021750' => 'sed', 'Sed0026279' => 'sed', 'SEGI_05312' => 'sgi', 'SEGI_10112' => 'sgi', 'SEGI_15835' => 'sgi', 'SEGI_30386' => 'sgi', 'SEGI_34122' => 'sgi', 'SEGI_35063' => 'sgi', 'SGA_v2.0_scaffold101G29794' => 'sas', 'SGA_v2.0_scaffold1G00573' => 'sas', 'SGA_v2.0_scaffold79G25637' => 'sas', 'SGA_v2.0_scaffold88G27283' => 'sas', 'SGA_v2.0_scaffold88G27285' => 'sas', 'SGA_v2.0_scaffold88G27331' => 'sas', 'SHI09937' => 'shi', 'SMO119G0302' => 'smo', 'SMO137G0231' => 'smo', 'SMO367G1151' => 'smo', 'Solyc02g082000.3' => 'sly', 'Solyc06g031670.3' => 'sly', 'Solyc06g053810.3' => 'sly', 'Solyc07g025457.1' => 'sly', 'Solyc08g059740.1' => 'sly', 'Solyc08g059750.3' => 'sly', 'Solyc09g083370.3' => 'sly', 'Solyc12g038950.3' => 'sly', 'Sopen02g026630' => 'spe', 'Sopen06g018930' => 'spe', 'Sopen06g018940' => 'spe', 'Sopen08g009460' => 'spe', 'Sopen09g032290' => 'spe', 'Sp1g03080' => 'spa', 'Sp1g03090' => 'spa', 'Sp1g05480' => 'spa', 'Sp2g07860' => 'spa', 'Sp2g08430' => 'spa', 'Sp2g08440' => 'spa', 'Sp2g26200' => 'spa', 'Sp4g13170' => 'spa', 'Sp6g33840' => 'spa', 'SpUn1204_0010' => 'spa', 'TAR365G0908' => 'tar', 'TAR381G1270' => 'tar', 'TAR381G1651' => 'tar', 'TAR625G1131' => 'tar', 'TAR633G0962' => 'tar', 'TAR633G1729' => 'tar', 'TAR633G1864' => 'tar', 'TAR636G0221' => 'tar', 'TAR636G0314' => 'tar', 'TAR636G3202' => 'tar', 'THA.LOC104800805' => 'tha', 'THA.LOC104801096' => 'tha', 'THA.LOC104801555' => 'tha', 'THA.LOC104808491' => 'tha', 'THA.LOC104808595' => 'tha', 'THA.LOC104815985' => 'tha', 'THA.LOC104822250' => 'tha', 'THA.LOC104826071' => 'tha', 'Thecc.01G265200' => 'tca', 'Thecc.01G265300' => 'tca', 'Thecc.01G265700' => 'tca', 'Thecc.03G109100' => 'tca', 'Thecc.04G245900' => 'tca', 'Thecc.04G246000' => 'tca', 'Thhalv10003334m.g' => 'esa', 'Thhalv10005508m.g' => 'esa', 'Thhalv10005643m.g' => 'esa', 'Thhalv10007316m.g' => 'esa', 'Thhalv10009006m.g' => 'esa', 'Thhalv10009309m.g' => 'esa', 'Thhalv10014917m.g' => 'esa', 'Thhalv10014919m.g' => 'esa', 'Thhalv10015393m.g' => 'esa', 'Thhalv10016515m.g' => 'esa', 'Thhalv10029242m.g' => 'esa', 'TPR.G16654' => 'tpr', 'TPR.G20589' => 'tpr', 'TPR.G23029' => 'tpr', 'TPR.G27731' => 'tpr', 'TPR.G28889' => 'tpr', 'TPR.G28899' => 'tpr', 'TPR.G30846' => 'tpr', 'TPR.G5452' => 'tpr', 'TPR.G5713' => 'tpr', 'TPR.G9046' => 'tpr', 'TPR.G9061' => 'tpr', 'TWI09G1075' => 'twi', 'TWI12G0806' => 'twi', 'TWI18G0108' => 'twi', 'TWI53G1361' => 'twi', 'TWI73G0185' => 'twi', 'TWI73G0427' => 'twi', 'unitig_37.g12001' => 'ugi', 'unitig_747.g21660' => 'ugi', 'unitig_748.g7232' => 'ugi', 'unitig_748.g7315' => 'ugi', 'unitig_85.g27262' => 'ugi', 'unitig_92.g28220' => 'ugi', 'vmacro02632' => 'vma', 'vmacro08410' => 'vma', 'vmacro08411' => 'vma', 'vmacro15407' => 'vma', 'VMungo0251G3619' => 'vmu', 'VMungo0720G1204' => 'vmu', 'VMungo0720G1918' => 'vmu', 'VMungo0720G2387' => 'vmu', 'VMungo0720G2961' => 'vmu', 'VMungo1215G2154' => 'vmu', 'VMungo1383G2411' => 'vmu', 'Zm00001eb051130' => 'zma', 'Zm00001eb116830' => 'zma', 'Zm00001eb116850' => 'zma', 'Zm00001eb151740' => 'zma', 'Zm00001eb292360' => 'zma', 'Zm00001eb301640' => 'zma' ) $gf_id = 'HOM05D000856' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000856' ) $data_identifier = 'HOM05D000856' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 13, 'ath' => (int) 10, 'atr' => (int) 1, 'acertr' => (int) 8, 'cqu' => (int) 6, 'bca' => (int) 21, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 11, 'car' => (int) 9, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 8, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 5, 'fan' => (int) 16, 'fve' => (int) 6, 'gma' => (int) 11, 'ghi' => (int) 19, 'gra' => (int) 9, 'vvi' => (int) 7, 'han' => (int) 17, 'cav' => (int) 5, 'hma' => (int) 2, 'vpl' => (int) 2, 'sun' => (int) 7, 'lal' => (int) 9, 'lja' => (int) 5, 'lonja' => (int) 9, 'lsa' => (int) 5, 'mes' => (int) 8, 'mpo' => (int) 3, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 10, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 15, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 9, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 9, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 6, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 5, 'spa' => (int) 10, 'tar' => (int) 10, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 11, 'tpr' => (int) 11, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 4, 'vmu' => (int) 7, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb301640' $species_info = array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ) $local_species = 'bna' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000856', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p00010' => 'bna', 'A03p04160' => 'bna', 'A03p17160' => 'bna', 'A04p23370' => 'bna', 'A05p14860' => 'bna', 'A08p37020' => 'bna', 'A09p08050' => 'bna', 'A09p66800' => 'bna', 'A09p67940' => 'bna', 'A10p02680' => 'bna', 'A10p05320' => 'bna', 'Aa31LG1G20560' => 'aar', 'Aa31LG1G20610' => 'aar', 'Aa31LG1G7810' => 'aar', 'Aa31LG5G3590' => 'aar', 'Aa31LG5G6140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3819' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4683' => 'aag', 'Actinidia04480' => 'ach', 'Actinidia05466' => 'ach', 'Actinidia08445' => 'ach', 'Actinidia21170' => 'ach', 'Actinidia24812' => 'ach', 'Actinidia24951' => 'ach', 'Actinidia40088' => 'ach', 'Ah.02g111660' => 'amhyb', 'Ah.11g048900' => 'amhyb', 'Ah.11g049910' => 'amhyb', 'AL1G13870' => 'aly', 'AL1G13880' => 'aly', 'AL1G16760' => 'aly', 'AL390U10020' => 'aly', 'AL4G25520' => 'aly', 'AL6G19890' => 'aly', 'AL6G19900' => 'aly', 'AL6G19910' => 'aly', 'AL8G40100' => 'aly', 'Aqoxy2G03562' => 'aox', 'Aqoxy5G00316' => 'aox', 'Aqoxy5G00926' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1628KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1H403S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2FU6SJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.882I6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8YRY2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YN1SN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AF70II' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZA8L1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F916KL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHRD8H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KTZ8QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S22EMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8M29T' => 'arhy', 'AT1G04270' => 'ath', 'AT1G04280' => 'ath', 'AT1G06750' => 'ath', 'AT1G33850' => 'ath', 'AT2G30630' => 'ath', 'AT5G09490' => 'ath', 'AT5G09500' => 'ath', 'AT5G09510' => 'ath', 'AT5G43640' => 'ath', 'AT5G63070' => 'ath', 'ATR0605G315' => 'atr', 'Atru.chr11.175' => 'acertr', 'Atru.chr11.653' => 'acertr', 'Atru.chr3.1616' => 'acertr', 'Atru.chr4.2230' => 'acertr', 'Atru.chr4.2232' => 'acertr', 'Atru.chr5.1598' => 'acertr', 'Atru.chr5.1600' => 'acertr', 'Atru.chr5.2188' => 'acertr', 'AUR62008326' => 'cqu', 'AUR62011922' => 'cqu', 'AUR62011924' => 'cqu', 'AUR62021771' => 'cqu', 'AUR62032237' => 'cqu', 'AUR62032240' => 'cqu', 'BcaB01g05572' => 'bca', 'BcaB02g10337' => 'bca', 'BcaB04g19944' => 'bca', 'BcaB05g21548' => 'bca', 'BcaB05g21549' => 'bca', 'BcaB05g23227' => 'bca', 'BcaB06g26256' => 'bca', 'BcaB06g26257' => 'bca', 'BcaB06g28379' => 'bca', 'BcaC02g11159' => 'bca', 'BcaC03g13258' => 'bca', 'BcaC03g13259' => 'bca', 'BcaC05g24456' => 'bca', 'BcaC05g24457' => 'bca', 'BcaC07g36922' => 'bca', 'BcaC07g36923' => 'bca', 'BcaC07g42050' => 'bca', 'BcaC07g42176' => 'bca', 'BcaC07g42195' => 'bca', 'BcaC07g42196' => 'bca', 'BcaNung06674' => 'bca', 'BolC2t06351H' => 'bol', 'BolC2t06352H' => 'bol', 'BolC3t12993H' => 'bol', 'BolC4t23525H' => 'bol', 'BolC4t27475H' => 'bol', 'BolC5t29025H' => 'bol', 'BolC5t29026H' => 'bol', 'BolC8t46898H' => 'bol', 'BolC8t46899H' => 'bol', 'BolC8t52630H' => 'bol', 'BolC8t52765H' => 'bol', 'BolC9t53824H' => 'bol', 'BraA03t09760Z' => 'bra', 'BraA03t10990Z' => 'bra', 'BraA05t20413Z' => 'bra', 'BraA08t35602Z' => 'bra', 'BraA09t36458Z' => 'bra', 'BraA09t42018Z' => 'bra', 'BraA09t42129Z' => 'bra', 'BraA10t42536Z' => 'bra', 'BraA10t42537Z' => 'bra', 'C01p10690' => 'bna', 'C02p03890' => 'bna', 'C02p03900' => 'bna', 'C03p04620' => 'bna', 'C04p19870' => 'bna', 'C04p59670' => 'bna', 'C05p02460' => 'bna', 'C05p02470' => 'bna', 'C08p00980' => 'bna', 'C08p00990' => 'bna', 'C08p51030' => 'bna', 'C08p52360' => 'bna', 'C09p09120' => 'bna', 'CAN.G19.15' => 'can', 'CAN.G251.10' => 'can', 'CAN.G251.9' => 'can', 'CAN.G398.24' => 'can', 'CAN.G410.32' => 'can', 'CAN.G881.2' => 'can', 'CANSAT01G3025' => 'cansat', 'CANSAT78G1211' => 'cansat', 'CANSAT78G1218' => 'cansat', 'CANSAT78G1521' => 'cansat', 'CANSAT78G1670' => 'cansat', 'CARHR003600' => 'chi', 'CARHR003610' => 'chi', 'CARHR006290' => 'chi', 'CARHR006430' => 'chi', 'CARHR124110' => 'chi', 'CARHR203870' => 'chi', 'CARHR203880' => 'chi', 'CARHR203890' => 'chi', 'CARHR276880' => 'chi', 'Carub.0001s0346' => 'cru', 'Carub.0001s0347' => 'cru', 'Carub.0001s0607' => 'cru', 'Carub.0003s2768' => 'cru', 'Carub.0003s2769' => 'cru', 'Carub.0004s1178' => 'cru', 'Carub.0006s0806' => 'cru', 'Carub.0006s0807' => 'cru', 'Carub.0006s0808' => 'cru', 'Carub.0008s0501' => 'cru', 'Carub.0008s2379' => 'cru', 'Ca_08655_v3' => 'car', 'Ca_08922_v3' => 'car', 'Ca_08923_v3' => 'car', 'Ca_09119_v3' => 'car', 'Ca_09703_v3' => 'car', 'Ca_09705_v3' => 'car', 'Ca_09835_v3' => 'car', 'Ca_26403_v3' => 'car', 'Ca_30719_v3' => 'car', 'CBR_g17958' => 'cbr', 'CBR_g40516' => 'cbr', 'Cc00_g05350' => 'ccan', 'Cc01_g18690' => 'ccan', 'Cc03_g04830' => 'ccan', 'Cc03_g04850' => 'ccan', 'CDE02G4469' => 'cde', 'CDE06G0883' => 'cde', 'CDE06G1295' => 'cde', 'CDE06G1390' => 'cde', 'CDE07G0584' => 'cde', 'CDE07G1084' => 'cde', 'CDE08G1259' => 'cde', 'Cfa002341' => 'cfa', 'Cfa024337' => 'cfa', 'Ciclev10004749m.g' => 'ccl', 'Ciclev10006127m.g' => 'ccl', 'Ciclev10019720m.g' => 'ccl', 'Ciclev10022652m.g' => 'ccl', 'CiPaw.01G190400' => 'cil', 'CiPaw.01G190500' => 'cil', 'CiPaw.02G116400' => 'cil', 'CiPaw.02G116500' => 'cil', 'CiPaw.04G183000' => 'cil', 'CiPaw.04G183300' => 'cil', 'ClCG05G004610' => 'cla', 'ClCG05G004620' => 'cla', 'ClCG06G006730' => 'cla', 'ClCG06G006740' => 'cla', 'ClCG11G003690' => 'cla', 'COL.COLO4_08276' => 'col', 'COL.COLO4_08277' => 'col', 'COL.COLO4_15787' => 'col', 'COL.COLO4_15789' => 'col', 'Cpa.g.c44815' => 'cpa', 'Cpa.g.sc52.144' => 'cpa', 'Cpa.g.sc58.46' => 'cpa', 'Cpa.g.sc58.47' => 'cpa', 'Cre08.g360900' => 'cre', 'CsaV3_2G013030' => 'csa', 'CsaV3_2G013050' => 'csa', 'CsaV3_2G015620' => 'csa', 'CsaV3_3G012590' => 'csa', 'CsaV3_3G012600' => 'csa', 'CSS0001641' => 'camsi', 'CSS0008310' => 'camsi', 'CSS0013011' => 'camsi', 'CSS0017147' => 'camsi', 'CSS0022970' => 'camsi', 'CSS0025655' => 'camsi', 'CSS0028665' => 'camsi', 'CSS0029117' => 'camsi', 'CSS0032024' => 'camsi', 'CSS0039681' => 'camsi', 'CSS0046516' => 'camsi', 'CSS0050307' => 'camsi', 'DCAR_005871' => 'dca', 'DCAR_007342' => 'dca', 'DCAR_024228' => 'dca', 'DCAR_027277' => 'dca', 'DCAR_030718' => 'dca', 'Dinv20287' => 'din', 'Dinv22461' => 'din', 'Dinv22464' => 'din', 'Dinv29912' => 'din', 'Dinv29913' => 'din', 'Dinv34580' => 'din', 'Dinv34582' => 'din', 'Dinv44632' => 'din', 'Duzib052G0266' => 'dzi', 'Duzib133G0907' => 'dzi', 'Duzib133G1034' => 'dzi', 'Duzib138G0207' => 'dzi', 'Duzib138G0491' => 'dzi', 'Duzib151G0812' => 'dzi', 'Duzib151G1166' => 'dzi', 'Duzib168G0192' => 'dzi', 'Duzib211G0077' => 'dzi', 'Duzib212G0429' => 'dzi', 'Duzib212G0472' => 'dzi', 'ECA233G2617' => 'eca', 'ECA236G4188' => 'eca', 'ECA240G0936' => 'eca', 'ECA240G1129' => 'eca', 'ECA247G0623' => 'eca', 'EL10Ac5g10451' => 'bvu', 'EL10Ac5g10453' => 'bvu', 'EL10Ac5g10894' => 'bvu', 'Eucgr.H00192' => 'egr', 'Eucgr.H00193' => 'egr', 'Eucgr.H00194' => 'egr', 'Eucgr.J01562' => 'egr', 'Eucgr.K03301' => 'egr', 'FAN02G0632' => 'fan', 'FAN05G5378' => 'fan', 'FAN09G3247' => 'fan', 'FAN12G0435' => 'fan', 'FAN12G2426' => 'fan', 'FAN14G1707' => 'fan', 'FAN14G4725' => 'fan', 'FAN15G2071' => 'fan', 'FAN17G3065' => 'fan', 'FAN19G1376' => 'fan', 'FAN20G0354' => 'fan', 'FAN20G2429' => 'fan', 'FAN20G2658' => 'fan', 'FAN24G2343' => 'fan', 'FAN27G2362' => 'fan', 'FAN28G1765' => 'fan', 'FvH4_1g16020' => 'fve', 'FvH4_2g04890' => 'fve', 'FvH4_2g22270' => 'fve', 'FvH4_4g02630' => 'fve', 'FvH4_4g02640' => 'fve', 'FvH4_6g02650' => 'fve', 'Glyma.02G140600' => 'gma', 'Glyma.03G159900' => 'gma', 'Glyma.05G234800' => 'gma', 'Glyma.07G269600' => 'gma', 'Glyma.08G042300' => 'gma', 'Glyma.10G033500' => 'gma', 'Glyma.10G185200' => 'gma', 'Glyma.17G004300' => 'gma', 'Glyma.19G161900' => 'gma', 'Glyma.20G205100' => 'gma', 'Glyma.20G205200' => 'gma', 'Gohir.A01G139101' => 'ghi', 'Gohir.A02G035600' => 'ghi', 'Gohir.A02G117901' => 'ghi', 'Gohir.A07G210100' => 'ghi', 'Gohir.A07G210200' => 'ghi', 'Gohir.A08G061100' => 'ghi', 'Gohir.A09G223000' => 'ghi', 'Gohir.A09G223100' => 'ghi', 'Gohir.A10G113900' => 'ghi', 'Gohir.A10G114000' => 'ghi', 'Gohir.D02G042300' => 'ghi', 'Gohir.D07G216100' => 'ghi', 'Gohir.D07G216200' => 'ghi', 'Gohir.D08G070400' => 'ghi', 'Gohir.D09G225000' => 'ghi', 'Gohir.D09G225100' => 'ghi', 'Gohir.D10G152300' => 'ghi', 'Gohir.D10G153200' => 'ghi', 'Gohir.D11G133701' => 'ghi', 'Gorai.004G074100' => 'gra', 'Gorai.005G046800' => 'gra', 'Gorai.006G246500' => 'gra', 'Gorai.006G246600' => 'gra', 'Gorai.007G142900' => 'gra', 'Gorai.011G171000' => 'gra', 'Gorai.011G171100' => 'gra', 'Gorai.013G104300' => 'gra', 'Gorai.013G104400' => 'gra', 'GSVIVG01000754001' => 'vvi', 'GSVIVG01000756001' => 'vvi', 'GSVIVG01010903001' => 'vvi', 'GSVIVG01017623001' => 'vvi', 'GSVIVG01018113001' => 'vvi', 'GSVIVG01018116001' => 'vvi', 'GSVIVG01018118001' => 'vvi', 'HanXRQChr03g0076211' => 'han', 'HanXRQChr03g0092431' => 'han', 'HanXRQChr03g0092441' => 'han', 'HanXRQChr03g0092591' => 'han', 'HanXRQChr03g0092671' => 'han', 'HanXRQChr03g0092681' => 'han', 'HanXRQChr03g0092691' => 'han', 'HanXRQChr03g0092701' => 'han', 'HanXRQChr03g0092721' => 'han', 'HanXRQChr03g0092731' => 'han', 'HanXRQChr04g0113681' => 'han', 'HanXRQChr10g0281371' => 'han', 'HanXRQChr11g0337141' => 'han', 'HanXRQChr13g0424521' => 'han', 'HanXRQChr13g0424531' => 'han', 'HanXRQChr13g0424541' => 'han', 'HanXRQChr16g0498221' => 'han', 'Haze_04377' => 'cav', 'Haze_11298' => 'cav', 'Haze_24547' => 'cav', 'Haze_24550' => 'cav', 'Haze_26587' => 'cav', 'Hma1.2p1_0650F.1_g195410' => 'hma', 'Hma1.2p1_0893F.1_g233470' => 'hma', 'HPP92_006508' => 'vpl', 'HPP92_024780' => 'vpl', 'Hund02688' => 'sun', 'Hund09380' => 'sun', 'Hund09381' => 'sun', 'Hund09832' => 'sun', 'Hund09833' => 'sun', 'Hund11351' => 'sun', 'Hund11513' => 'sun', 'Lalb_Chr06g0162591' => 'lal', 'Lalb_Chr06g0162601' => 'lal', 'Lalb_Chr06g0169321' => 'lal', 'Lalb_Chr09g0330951' => 'lal', 'Lalb_Chr16g0387631' => 'lal', 'Lalb_Chr21g0306241' => 'lal', 'Lalb_Chr25g0290051' => 'lal', 'Lalb_Chr25g0290061' => 'lal', 'Lalb_Chr25g0290071' => 'lal', 'Lj1g0003876' => 'lja', 'Lj1P1207T36' => 'lonja', 'Lj2C1156G12' => 'lonja', 'Lj3A793G39' => 'lonja', 'Lj3C580G2' => 'lonja', 'Lj3C780G2' => 'lonja', 'Lj3C780T4' => 'lonja', 'Lj3C793G9' => 'lonja', 'Lj4g0012960' => 'lja', 'Lj5g0021252' => 'lja', 'Lj5g0021484' => 'lja', 'Lj5g0024528' => 'lja', 'Lj6A399T12' => 'lonja', 'Lj6A656G65' => 'lonja', 'Lsat_1_v5_gn_3_125500' => 'lsa', 'Lsat_1_v5_gn_3_125540' => 'lsa', 'Lsat_1_v5_gn_5_72701' => 'lsa', 'Lsat_1_v5_gn_8_91560' => 'lsa', 'Lsat_1_v5_gn_9_9640' => 'lsa', 'Manes.01G200600' => 'mes', 'Manes.01G200700' => 'mes', 'Manes.03G168900' => 'mes', 'Manes.03G169000' => 'mes', 'Manes.05G085801' => 'mes', 'Manes.05G086200' => 'mes', 'Manes.15G036700' => 'mes', 'Manes.15G036900' => 'mes', 'Mapoly0004s0172' => 'mpo', 'Mapoly0023s0001' => 'mpo', 'Mapoly0142s0012' => 'mpo', 'MBI01_g32854_MAGBIO' => 'mbi', 'MBI11_g24427_MAGBIO' => 'mbi', 'MBI11_g47319_MAGBIO' => 'mbi', 'MCO01G433' => 'mco', 'MD00G1187800' => 'mdo', 'MD04G1226500' => 'mdo', 'MD05G1203900' => 'mdo', 'MD10G1191100' => 'mdo', 'MD12G1243500' => 'mdo', 'MD13G1207000' => 'mdo', 'MD13G1207100' => 'mdo', 'MD16G1208600' => 'mdo', 'Medtr1g050352' => 'mtr', 'Medtr1g070385' => 'mtr', 'Medtr1g070450' => 'mtr', 'Medtr1g075200' => 'mtr', 'Medtr1g075250' => 'mtr', 'Medtr1g075260' => 'mtr', 'Medtr1g475250' => 'mtr', 'Medtr4g075450' => 'mtr', 'Medtr7g096300' => 'mtr', 'Medtr8g105110' => 'mtr', 'MELO3C006470.2' => 'cme', 'MELO3C006471.2' => 'cme', 'MELO3C020772.2' => 'cme', 'MELO3C026780.2' => 'cme', 'MELO3C026781.2' => 'cme', 'Migut.D00390' => 'egut', 'Migut.G00435' => 'egut', 'Migut.G00436' => 'egut', 'Migut.G00718' => 'egut', 'MSTRG.21891' => 'ama', 'MSTRG.26910' => 'ama', 'MSTRG.4099' => 'ama', 'MSTRG.9925' => 'ama', 'Nitab4.5_0000165g0010' => 'nta', 'Nitab4.5_0000209g0180' => 'nta', 'Nitab4.5_0000244g0440' => 'nta', 'Nitab4.5_0000525g0220' => 'nta', 'Nitab4.5_0001597g0020' => 'nta', 'Nitab4.5_0001878g0040' => 'nta', 'Nitab4.5_0001878g0060' => 'nta', 'Nitab4.5_0002838g0100' => 'nta', 'Nitab4.5_0002838g0120' => 'nta', 'Nitab4.5_0004798g0030' => 'nta', 'Nitab4.5_0005420g0010' => 'nta', 'Nitab4.5_0005507g0010' => 'nta', 'Nitab4.5_0005574g0020' => 'nta', 'Nitab4.5_0005838g0010' => 'nta', 'Nitab4.5_0010580g0020' => 'nta', 'Nn1g02599' => 'nnu', 'Nn1g02608' => 'nnu', 'Nn3g17742' => 'nnu', 'Nn3g19534' => 'nnu', 'Nn3g19535' => 'nnu', 'Oeu008790.1' => 'oeu', 'Oeu008792.1' => 'oeu', 'Oeu032590.1' => 'oeu', 'Oeu035349.1' => 'oeu', 'Oeu049791.1' => 'oeu', 'Os01g0774500' => 'osa', 'Os03g0628800' => 'osa', 'Os03g0798600' => 'osa', 'Os05g0508800' => 'osa', 'Peaxi162Scf00036g02018' => 'pax', 'Peaxi162Scf00578g00032' => 'pax', 'Peaxi162Scf00578g00317' => 'pax', 'Peaxi162Scf00785g00114' => 'pax', 'Peaxi162Scf00813g00119' => 'pax', 'Peaxi162Scf00906g00227' => 'pax', 'PGR004G0875' => 'pgr', 'PGR004G2424' => 'pgr', 'PGR031G1239' => 'pgr', 'PGR031G2474' => 'pgr', 'PGR044G0423' => 'pgr', 'PGSC0003DMG400001128' => 'stu', 'PGSC0003DMG400007336' => 'stu', 'PGSC0003DMG400016318' => 'stu', 'PGSC0003DMG400016319' => 'stu', 'PGSC0003DMG400018074' => 'stu', 'Phvul.001G157700' => 'pvu', 'Phvul.002G148550' => 'pvu', 'Phvul.002G320200' => 'pvu', 'Phvul.003G089200' => 'pvu', 'Phvul.007G126000' => 'pvu', 'Phvul.007G126100' => 'pvu', 'Phvul.007G178000' => 'pvu', 'Phvul.007G178200' => 'pvu', 'Potri.002G043000' => 'ptr', 'Potri.002G043200' => 'ptr', 'Potri.003G123750' => 'ptr', 'Potri.005G055401' => 'ptr', 'Potri.005G219700' => 'ptr', 'Potri.005G220000' => 'ptr', 'Potri.008G161901' => 'ptr', 'Potri.008G162000' => 'ptr', 'Potri.008G162400' => 'ptr', 'Potri.010G076900' => 'ptr', 'Pp3c12_9180' => 'ppa', 'Pp3c13_19770' => 'ppa', 'Pp3c14_22950' => 'ppa', 'Pp3c16_12160' => 'ppa', 'Pp3c27_7820' => 'ppa', 'Pp3c2_3490' => 'ppa', 'Pp3c3_23700' => 'ppa', 'Pp3c3_36520' => 'ppa', 'Pp3c4_15250' => 'ppa', 'PRCOL_00007002' => 'pco', 'Prupe.1G030600' => 'ppe', 'Prupe.1G030700' => 'ppe', 'Prupe.6G345200' => 'ppe', 'Prupe.8G230300' => 'ppe', 'Prupe.8G230500' => 'ppe', 'Psat3g059600' => 'psa', 'Psat5g200920' => 'psa', 'Psat6g056440' => 'psa', 'Psat6g057360' => 'psa', 'Psat6g134120' => 'psa', 'Psat6g134160' => 'psa', 'Psat7g008640' => 'psa', 'Psat7g185240' => 'psa', 'PSO017G1330' => 'pso', 'PSO063G6097' => 'pso', 'PSO170G0835' => 'pso', 'PSO170G2499' => 'pso', 'PSO210G5058' => 'pso', 'PSO210G6154' => 'pso', 'PSO585G0031' => 'pso', 'PSO832G0264' => 'pso', 'PSO832G4288' => 'pso', 'QL03p027355' => 'qlo', 'QL03p027430' => 'qlo', 'QL04p081380' => 'qlo', 'QL06p015642' => 'qlo', 'QL06p015650' => 'qlo', 'QL06p015686' => 'qlo', 'QL12p042927' => 'qlo', 'QL93p1863_0035' => 'qlo', 'RcHm_v2.0_Chr3g0450581' => 'rch', 'RcHm_v2.0_Chr4g0390371' => 'rch', 'RcHm_v2.0_Chr4g0390381' => 'rch', 'RcHm_v2.0_Chr4g0390491' => 'rch', 'RcHm_v2.0_Chr4g0390501' => 'rch', 'RcHm_v2.0_Chr6g0289231' => 'rch', 'Rhsim04G0190400' => 'rsi', 'Rhsim04G0190500' => 'rsi', 'Rhsim04G0190600' => 'rsi', 'Rhsim13G0031400' => 'rsi', 'Rhsim13G0165600' => 'rsi', 'RhsimUnG0114600' => 'rsi', 'RhsimUnG0114700' => 'rsi', 'Sabra02G0034800' => 'sbr', 'Sabra02G0035100' => 'sbr', 'Sabra05G0168600' => 'sbr', 'Sabra05G0168800' => 'sbr', 'Sabra08G0123700' => 'sbr', 'Sabra10G0031900' => 'sbr', 'Sabra13G0039000' => 'sbr', 'SalBow2G0782' => 'sbo', 'SalBow2G1403' => 'sbo', 'SalBow4G0074' => 'sbo', 'SalBow4G2635' => 'sbo', 'SalBow5G3010' => 'sbo', 'Sc05g0000870' => 'sci', 'Sc05g0000890' => 'sci', 'Sc13g0005000' => 'sci', 'Sc13g0005030' => 'sci', 'Sc19g0003790' => 'sci', 'Sc19g0003800' => 'sci', 'Sed0003467' => 'sed', 'Sed0009355' => 'sed', 'Sed0009894' => 'sed', 'Sed0011972' => 'sed', 'Sed0021483' => 'sed', 'Sed0021750' => 'sed', 'Sed0026279' => 'sed', 'SEGI_05312' => 'sgi', 'SEGI_10112' => 'sgi', 'SEGI_15835' => 'sgi', 'SEGI_30386' => 'sgi', 'SEGI_34122' => 'sgi', 'SEGI_35063' => 'sgi', 'SGA_v2.0_scaffold101G29794' => 'sas', 'SGA_v2.0_scaffold1G00573' => 'sas', 'SGA_v2.0_scaffold79G25637' => 'sas', 'SGA_v2.0_scaffold88G27283' => 'sas', 'SGA_v2.0_scaffold88G27285' => 'sas', 'SGA_v2.0_scaffold88G27331' => 'sas', 'SHI09937' => 'shi', 'SMO119G0302' => 'smo', 'SMO137G0231' => 'smo', 'SMO367G1151' => 'smo', 'Solyc02g082000.3' => 'sly', 'Solyc06g031670.3' => 'sly', 'Solyc06g053810.3' => 'sly', 'Solyc07g025457.1' => 'sly', 'Solyc08g059740.1' => 'sly', 'Solyc08g059750.3' => 'sly', 'Solyc09g083370.3' => 'sly', 'Solyc12g038950.3' => 'sly', 'Sopen02g026630' => 'spe', 'Sopen06g018930' => 'spe', 'Sopen06g018940' => 'spe', 'Sopen08g009460' => 'spe', 'Sopen09g032290' => 'spe', 'Sp1g03080' => 'spa', 'Sp1g03090' => 'spa', 'Sp1g05480' => 'spa', 'Sp2g07860' => 'spa', 'Sp2g08430' => 'spa', 'Sp2g08440' => 'spa', 'Sp2g26200' => 'spa', 'Sp4g13170' => 'spa', 'Sp6g33840' => 'spa', 'SpUn1204_0010' => 'spa', 'TAR365G0908' => 'tar', 'TAR381G1270' => 'tar', 'TAR381G1651' => 'tar', 'TAR625G1131' => 'tar', 'TAR633G0962' => 'tar', 'TAR633G1729' => 'tar', 'TAR633G1864' => 'tar', 'TAR636G0221' => 'tar', 'TAR636G0314' => 'tar', 'TAR636G3202' => 'tar', 'THA.LOC104800805' => 'tha', 'THA.LOC104801096' => 'tha', 'THA.LOC104801555' => 'tha', 'THA.LOC104808491' => 'tha', 'THA.LOC104808595' => 'tha', 'THA.LOC104815985' => 'tha', 'THA.LOC104822250' => 'tha', 'THA.LOC104826071' => 'tha', 'Thecc.01G265200' => 'tca', 'Thecc.01G265300' => 'tca', 'Thecc.01G265700' => 'tca', 'Thecc.03G109100' => 'tca', 'Thecc.04G245900' => 'tca', 'Thecc.04G246000' => 'tca', 'Thhalv10003334m.g' => 'esa', 'Thhalv10005508m.g' => 'esa', 'Thhalv10005643m.g' => 'esa', 'Thhalv10007316m.g' => 'esa', 'Thhalv10009006m.g' => 'esa', 'Thhalv10009309m.g' => 'esa', 'Thhalv10014917m.g' => 'esa', 'Thhalv10014919m.g' => 'esa', 'Thhalv10015393m.g' => 'esa', 'Thhalv10016515m.g' => 'esa', 'Thhalv10029242m.g' => 'esa', 'TPR.G16654' => 'tpr', 'TPR.G20589' => 'tpr', 'TPR.G23029' => 'tpr', 'TPR.G27731' => 'tpr', 'TPR.G28889' => 'tpr', 'TPR.G28899' => 'tpr', 'TPR.G30846' => 'tpr', 'TPR.G5452' => 'tpr', 'TPR.G5713' => 'tpr', 'TPR.G9046' => 'tpr', 'TPR.G9061' => 'tpr', 'TWI09G1075' => 'twi', 'TWI12G0806' => 'twi', 'TWI18G0108' => 'twi', 'TWI53G1361' => 'twi', 'TWI73G0185' => 'twi', 'TWI73G0427' => 'twi', 'unitig_37.g12001' => 'ugi', 'unitig_747.g21660' => 'ugi', 'unitig_748.g7232' => 'ugi', 'unitig_748.g7315' => 'ugi', 'unitig_85.g27262' => 'ugi', 'unitig_92.g28220' => 'ugi', 'vmacro02632' => 'vma', 'vmacro08410' => 'vma', 'vmacro08411' => 'vma', 'vmacro15407' => 'vma', 'VMungo0251G3619' => 'vmu', 'VMungo0720G1204' => 'vmu', 'VMungo0720G1918' => 'vmu', 'VMungo0720G2387' => 'vmu', 'VMungo0720G2961' => 'vmu', 'VMungo1215G2154' => 'vmu', 'VMungo1383G2411' => 'vmu', 'Zm00001eb051130' => 'zma', 'Zm00001eb116830' => 'zma', 'Zm00001eb116850' => 'zma', 'Zm00001eb151740' => 'zma', 'Zm00001eb292360' => 'zma', 'Zm00001eb301640' => 'zma' ), 'gf_id' => 'HOM05D000856', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000856' ), 'data_identifier' => 'HOM05D000856', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000856', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p00010' => 'bna', 'A03p04160' => 'bna', 'A03p17160' => 'bna', 'A04p23370' => 'bna', 'A05p14860' => 'bna', 'A08p37020' => 'bna', 'A09p08050' => 'bna', 'A09p66800' => 'bna', 'A09p67940' => 'bna', 'A10p02680' => 'bna', 'A10p05320' => 'bna', 'Aa31LG1G20560' => 'aar', 'Aa31LG1G20610' => 'aar', 'Aa31LG1G7810' => 'aar', 'Aa31LG5G3590' => 'aar', 'Aa31LG5G6140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3819' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4683' => 'aag', 'Actinidia04480' => 'ach', 'Actinidia05466' => 'ach', 'Actinidia08445' => 'ach', 'Actinidia21170' => 'ach', 'Actinidia24812' => 'ach', 'Actinidia24951' => 'ach', 'Actinidia40088' => 'ach', 'Ah.02g111660' => 'amhyb', 'Ah.11g048900' => 'amhyb', 'Ah.11g049910' => 'amhyb', 'AL1G13870' => 'aly', 'AL1G13880' => 'aly', 'AL1G16760' => 'aly', 'AL390U10020' => 'aly', 'AL4G25520' => 'aly', 'AL6G19890' => 'aly', 'AL6G19900' => 'aly', 'AL6G19910' => 'aly', 'AL8G40100' => 'aly', 'Aqoxy2G03562' => 'aox', 'Aqoxy5G00316' => 'aox', 'Aqoxy5G00926' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1628KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1H403S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2FU6SJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.882I6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8YRY2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YN1SN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AF70II' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZA8L1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F916KL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHRD8H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KTZ8QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S22EMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8M29T' => 'arhy', 'AT1G04270' => 'ath', 'AT1G04280' => 'ath', 'AT1G06750' => 'ath', 'AT1G33850' => 'ath', 'AT2G30630' => 'ath', 'AT5G09490' => 'ath', 'AT5G09500' => 'ath', 'AT5G09510' => 'ath', 'AT5G43640' => 'ath', 'AT5G63070' => 'ath', 'ATR0605G315' => 'atr', 'Atru.chr11.175' => 'acertr', 'Atru.chr11.653' => 'acertr', 'Atru.chr3.1616' => 'acertr', 'Atru.chr4.2230' => 'acertr', 'Atru.chr4.2232' => 'acertr', 'Atru.chr5.1598' => 'acertr', 'Atru.chr5.1600' => 'acertr', 'Atru.chr5.2188' => 'acertr', 'AUR62008326' => 'cqu', 'AUR62011922' => 'cqu', 'AUR62011924' => 'cqu', 'AUR62021771' => 'cqu', 'AUR62032237' => 'cqu', 'AUR62032240' => 'cqu', 'BcaB01g05572' => 'bca', 'BcaB02g10337' => 'bca', 'BcaB04g19944' => 'bca', 'BcaB05g21548' => 'bca', 'BcaB05g21549' => 'bca', 'BcaB05g23227' => 'bca', 'BcaB06g26256' => 'bca', 'BcaB06g26257' => 'bca', 'BcaB06g28379' => 'bca', 'BcaC02g11159' => 'bca', 'BcaC03g13258' => 'bca', 'BcaC03g13259' => 'bca', 'BcaC05g24456' => 'bca', 'BcaC05g24457' => 'bca', 'BcaC07g36922' => 'bca', 'BcaC07g36923' => 'bca', 'BcaC07g42050' => 'bca', 'BcaC07g42176' => 'bca', 'BcaC07g42195' => 'bca', 'BcaC07g42196' => 'bca', 'BcaNung06674' => 'bca', 'BolC2t06351H' => 'bol', 'BolC2t06352H' => 'bol', 'BolC3t12993H' => 'bol', 'BolC4t23525H' => 'bol', 'BolC4t27475H' => 'bol', 'BolC5t29025H' => 'bol', 'BolC5t29026H' => 'bol', 'BolC8t46898H' => 'bol', 'BolC8t46899H' => 'bol', 'BolC8t52630H' => 'bol', 'BolC8t52765H' => 'bol', 'BolC9t53824H' => 'bol', 'BraA03t09760Z' => 'bra', 'BraA03t10990Z' => 'bra', 'BraA05t20413Z' => 'bra', 'BraA08t35602Z' => 'bra', 'BraA09t36458Z' => 'bra', 'BraA09t42018Z' => 'bra', 'BraA09t42129Z' => 'bra', 'BraA10t42536Z' => 'bra', 'BraA10t42537Z' => 'bra', 'C01p10690' => 'bna', 'C02p03890' => 'bna', 'C02p03900' => 'bna', 'C03p04620' => 'bna', 'C04p19870' => 'bna', 'C04p59670' => 'bna', 'C05p02460' => 'bna', 'C05p02470' => 'bna', 'C08p00980' => 'bna', 'C08p00990' => 'bna', 'C08p51030' => 'bna', 'C08p52360' => 'bna', 'C09p09120' => 'bna', 'CAN.G19.15' => 'can', 'CAN.G251.10' => 'can', 'CAN.G251.9' => 'can', 'CAN.G398.24' => 'can', 'CAN.G410.32' => 'can', 'CAN.G881.2' => 'can', 'CANSAT01G3025' => 'cansat', 'CANSAT78G1211' => 'cansat', 'CANSAT78G1218' => 'cansat', 'CANSAT78G1521' => 'cansat', 'CANSAT78G1670' => 'cansat', 'CARHR003600' => 'chi', 'CARHR003610' => 'chi', 'CARHR006290' => 'chi', 'CARHR006430' => 'chi', 'CARHR124110' => 'chi', 'CARHR203870' => 'chi', 'CARHR203880' => 'chi', 'CARHR203890' => 'chi', 'CARHR276880' => 'chi', 'Carub.0001s0346' => 'cru', 'Carub.0001s0347' => 'cru', 'Carub.0001s0607' => 'cru', 'Carub.0003s2768' => 'cru', 'Carub.0003s2769' => 'cru', 'Carub.0004s1178' => 'cru', 'Carub.0006s0806' => 'cru', 'Carub.0006s0807' => 'cru', 'Carub.0006s0808' => 'cru', 'Carub.0008s0501' => 'cru', 'Carub.0008s2379' => 'cru', 'Ca_08655_v3' => 'car', 'Ca_08922_v3' => 'car', 'Ca_08923_v3' => 'car', 'Ca_09119_v3' => 'car', 'Ca_09703_v3' => 'car', 'Ca_09705_v3' => 'car', 'Ca_09835_v3' => 'car', 'Ca_26403_v3' => 'car', 'Ca_30719_v3' => 'car', 'CBR_g17958' => 'cbr', 'CBR_g40516' => 'cbr', 'Cc00_g05350' => 'ccan', 'Cc01_g18690' => 'ccan', 'Cc03_g04830' => 'ccan', 'Cc03_g04850' => 'ccan', 'CDE02G4469' => 'cde', 'CDE06G0883' => 'cde', 'CDE06G1295' => 'cde', 'CDE06G1390' => 'cde', 'CDE07G0584' => 'cde', 'CDE07G1084' => 'cde', 'CDE08G1259' => 'cde', 'Cfa002341' => 'cfa', 'Cfa024337' => 'cfa', 'Ciclev10004749m.g' => 'ccl', 'Ciclev10006127m.g' => 'ccl', 'Ciclev10019720m.g' => 'ccl', 'Ciclev10022652m.g' => 'ccl', 'CiPaw.01G190400' => 'cil', 'CiPaw.01G190500' => 'cil', 'CiPaw.02G116400' => 'cil', 'CiPaw.02G116500' => 'cil', 'CiPaw.04G183000' => 'cil', 'CiPaw.04G183300' => 'cil', 'ClCG05G004610' => 'cla', 'ClCG05G004620' => 'cla', 'ClCG06G006730' => 'cla', 'ClCG06G006740' => 'cla', 'ClCG11G003690' => 'cla', 'COL.COLO4_08276' => 'col', 'COL.COLO4_08277' => 'col', 'COL.COLO4_15787' => 'col', 'COL.COLO4_15789' => 'col', 'Cpa.g.c44815' => 'cpa', 'Cpa.g.sc52.144' => 'cpa', 'Cpa.g.sc58.46' => 'cpa', 'Cpa.g.sc58.47' => 'cpa', 'Cre08.g360900' => 'cre', 'CsaV3_2G013030' => 'csa', 'CsaV3_2G013050' => 'csa', 'CsaV3_2G015620' => 'csa', 'CsaV3_3G012590' => 'csa', 'CsaV3_3G012600' => 'csa', 'CSS0001641' => 'camsi', 'CSS0008310' => 'camsi', 'CSS0013011' => 'camsi', 'CSS0017147' => 'camsi', 'CSS0022970' => 'camsi', 'CSS0025655' => 'camsi', 'CSS0028665' => 'camsi', 'CSS0029117' => 'camsi', 'CSS0032024' => 'camsi', 'CSS0039681' => 'camsi', 'CSS0046516' => 'camsi', 'CSS0050307' => 'camsi', 'DCAR_005871' => 'dca', 'DCAR_007342' => 'dca', 'DCAR_024228' => 'dca', 'DCAR_027277' => 'dca', 'DCAR_030718' => 'dca', 'Dinv20287' => 'din', 'Dinv22461' => 'din', 'Dinv22464' => 'din', 'Dinv29912' => 'din', 'Dinv29913' => 'din', 'Dinv34580' => 'din', 'Dinv34582' => 'din', 'Dinv44632' => 'din', 'Duzib052G0266' => 'dzi', 'Duzib133G0907' => 'dzi', 'Duzib133G1034' => 'dzi', 'Duzib138G0207' => 'dzi', 'Duzib138G0491' => 'dzi', 'Duzib151G0812' => 'dzi', 'Duzib151G1166' => 'dzi', 'Duzib168G0192' => 'dzi', 'Duzib211G0077' => 'dzi', 'Duzib212G0429' => 'dzi', 'Duzib212G0472' => 'dzi', 'ECA233G2617' => 'eca', 'ECA236G4188' => 'eca', 'ECA240G0936' => 'eca', 'ECA240G1129' => 'eca', 'ECA247G0623' => 'eca', 'EL10Ac5g10451' => 'bvu', 'EL10Ac5g10453' => 'bvu', 'EL10Ac5g10894' => 'bvu', 'Eucgr.H00192' => 'egr', 'Eucgr.H00193' => 'egr', 'Eucgr.H00194' => 'egr', 'Eucgr.J01562' => 'egr', 'Eucgr.K03301' => 'egr', 'FAN02G0632' => 'fan', 'FAN05G5378' => 'fan', 'FAN09G3247' => 'fan', 'FAN12G0435' => 'fan', 'FAN12G2426' => 'fan', 'FAN14G1707' => 'fan', 'FAN14G4725' => 'fan', 'FAN15G2071' => 'fan', 'FAN17G3065' => 'fan', 'FAN19G1376' => 'fan', 'FAN20G0354' => 'fan', 'FAN20G2429' => 'fan', 'FAN20G2658' => 'fan', 'FAN24G2343' => 'fan', 'FAN27G2362' => 'fan', 'FAN28G1765' => 'fan', 'FvH4_1g16020' => 'fve', 'FvH4_2g04890' => 'fve', 'FvH4_2g22270' => 'fve', 'FvH4_4g02630' => 'fve', 'FvH4_4g02640' => 'fve', 'FvH4_6g02650' => 'fve', 'Glyma.02G140600' => 'gma', 'Glyma.03G159900' => 'gma', 'Glyma.05G234800' => 'gma', 'Glyma.07G269600' => 'gma', 'Glyma.08G042300' => 'gma', 'Glyma.10G033500' => 'gma', 'Glyma.10G185200' => 'gma', 'Glyma.17G004300' => 'gma', 'Glyma.19G161900' => 'gma', 'Glyma.20G205100' => 'gma', 'Glyma.20G205200' => 'gma', 'Gohir.A01G139101' => 'ghi', 'Gohir.A02G035600' => 'ghi', 'Gohir.A02G117901' => 'ghi', 'Gohir.A07G210100' => 'ghi', 'Gohir.A07G210200' => 'ghi', 'Gohir.A08G061100' => 'ghi', 'Gohir.A09G223000' => 'ghi', 'Gohir.A09G223100' => 'ghi', 'Gohir.A10G113900' => 'ghi', 'Gohir.A10G114000' => 'ghi', 'Gohir.D02G042300' => 'ghi', 'Gohir.D07G216100' => 'ghi', 'Gohir.D07G216200' => 'ghi', 'Gohir.D08G070400' => 'ghi', 'Gohir.D09G225000' => 'ghi', 'Gohir.D09G225100' => 'ghi', 'Gohir.D10G152300' => 'ghi', 'Gohir.D10G153200' => 'ghi', 'Gohir.D11G133701' => 'ghi', 'Gorai.004G074100' => 'gra', 'Gorai.005G046800' => 'gra', 'Gorai.006G246500' => 'gra', 'Gorai.006G246600' => 'gra', 'Gorai.007G142900' => 'gra', 'Gorai.011G171000' => 'gra', 'Gorai.011G171100' => 'gra', 'Gorai.013G104300' => 'gra', 'Gorai.013G104400' => 'gra', 'GSVIVG01000754001' => 'vvi', 'GSVIVG01000756001' => 'vvi', 'GSVIVG01010903001' => 'vvi', 'GSVIVG01017623001' => 'vvi', 'GSVIVG01018113001' => 'vvi', 'GSVIVG01018116001' => 'vvi', 'GSVIVG01018118001' => 'vvi', 'HanXRQChr03g0076211' => 'han', 'HanXRQChr03g0092431' => 'han', 'HanXRQChr03g0092441' => 'han', 'HanXRQChr03g0092591' => 'han', 'HanXRQChr03g0092671' => 'han', 'HanXRQChr03g0092681' => 'han', 'HanXRQChr03g0092691' => 'han', 'HanXRQChr03g0092701' => 'han', 'HanXRQChr03g0092721' => 'han', 'HanXRQChr03g0092731' => 'han', 'HanXRQChr04g0113681' => 'han', 'HanXRQChr10g0281371' => 'han', 'HanXRQChr11g0337141' => 'han', 'HanXRQChr13g0424521' => 'han', 'HanXRQChr13g0424531' => 'han', 'HanXRQChr13g0424541' => 'han', 'HanXRQChr16g0498221' => 'han', 'Haze_04377' => 'cav', 'Haze_11298' => 'cav', 'Haze_24547' => 'cav', 'Haze_24550' => 'cav', 'Haze_26587' => 'cav', 'Hma1.2p1_0650F.1_g195410' => 'hma', 'Hma1.2p1_0893F.1_g233470' => 'hma', 'HPP92_006508' => 'vpl', 'HPP92_024780' => 'vpl', 'Hund02688' => 'sun', 'Hund09380' => 'sun', 'Hund09381' => 'sun', 'Hund09832' => 'sun', 'Hund09833' => 'sun', 'Hund11351' => 'sun', 'Hund11513' => 'sun', 'Lalb_Chr06g0162591' => 'lal', 'Lalb_Chr06g0162601' => 'lal', 'Lalb_Chr06g0169321' => 'lal', 'Lalb_Chr09g0330951' => 'lal', 'Lalb_Chr16g0387631' => 'lal', 'Lalb_Chr21g0306241' => 'lal', 'Lalb_Chr25g0290051' => 'lal', 'Lalb_Chr25g0290061' => 'lal', 'Lalb_Chr25g0290071' => 'lal', 'Lj1g0003876' => 'lja', 'Lj1P1207T36' => 'lonja', 'Lj2C1156G12' => 'lonja', 'Lj3A793G39' => 'lonja', 'Lj3C580G2' => 'lonja', 'Lj3C780G2' => 'lonja', 'Lj3C780T4' => 'lonja', 'Lj3C793G9' => 'lonja', 'Lj4g0012960' => 'lja', 'Lj5g0021252' => 'lja', 'Lj5g0021484' => 'lja', 'Lj5g0024528' => 'lja', 'Lj6A399T12' => 'lonja', 'Lj6A656G65' => 'lonja', 'Lsat_1_v5_gn_3_125500' => 'lsa', 'Lsat_1_v5_gn_3_125540' => 'lsa', 'Lsat_1_v5_gn_5_72701' => 'lsa', 'Lsat_1_v5_gn_8_91560' => 'lsa', 'Lsat_1_v5_gn_9_9640' => 'lsa', 'Manes.01G200600' => 'mes', 'Manes.01G200700' => 'mes', 'Manes.03G168900' => 'mes', 'Manes.03G169000' => 'mes', 'Manes.05G085801' => 'mes', 'Manes.05G086200' => 'mes', 'Manes.15G036700' => 'mes', 'Manes.15G036900' => 'mes', 'Mapoly0004s0172' => 'mpo', 'Mapoly0023s0001' => 'mpo', 'Mapoly0142s0012' => 'mpo', 'MBI01_g32854_MAGBIO' => 'mbi', 'MBI11_g24427_MAGBIO' => 'mbi', 'MBI11_g47319_MAGBIO' => 'mbi', 'MCO01G433' => 'mco', 'MD00G1187800' => 'mdo', 'MD04G1226500' => 'mdo', 'MD05G1203900' => 'mdo', 'MD10G1191100' => 'mdo', 'MD12G1243500' => 'mdo', 'MD13G1207000' => 'mdo', 'MD13G1207100' => 'mdo', 'MD16G1208600' => 'mdo', 'Medtr1g050352' => 'mtr', 'Medtr1g070385' => 'mtr', 'Medtr1g070450' => 'mtr', 'Medtr1g075200' => 'mtr', 'Medtr1g075250' => 'mtr', 'Medtr1g075260' => 'mtr', 'Medtr1g475250' => 'mtr', 'Medtr4g075450' => 'mtr', 'Medtr7g096300' => 'mtr', 'Medtr8g105110' => 'mtr', 'MELO3C006470.2' => 'cme', 'MELO3C006471.2' => 'cme', 'MELO3C020772.2' => 'cme', 'MELO3C026780.2' => 'cme', 'MELO3C026781.2' => 'cme', 'Migut.D00390' => 'egut', 'Migut.G00435' => 'egut', 'Migut.G00436' => 'egut', 'Migut.G00718' => 'egut', 'MSTRG.21891' => 'ama', 'MSTRG.26910' => 'ama', 'MSTRG.4099' => 'ama', 'MSTRG.9925' => 'ama', 'Nitab4.5_0000165g0010' => 'nta', 'Nitab4.5_0000209g0180' => 'nta', 'Nitab4.5_0000244g0440' => 'nta', 'Nitab4.5_0000525g0220' => 'nta', 'Nitab4.5_0001597g0020' => 'nta', 'Nitab4.5_0001878g0040' => 'nta', 'Nitab4.5_0001878g0060' => 'nta', 'Nitab4.5_0002838g0100' => 'nta', 'Nitab4.5_0002838g0120' => 'nta', 'Nitab4.5_0004798g0030' => 'nta', 'Nitab4.5_0005420g0010' => 'nta', 'Nitab4.5_0005507g0010' => 'nta', 'Nitab4.5_0005574g0020' => 'nta', 'Nitab4.5_0005838g0010' => 'nta', 'Nitab4.5_0010580g0020' => 'nta', 'Nn1g02599' => 'nnu', 'Nn1g02608' => 'nnu', 'Nn3g17742' => 'nnu', 'Nn3g19534' => 'nnu', 'Nn3g19535' => 'nnu', 'Oeu008790.1' => 'oeu', 'Oeu008792.1' => 'oeu', 'Oeu032590.1' => 'oeu', 'Oeu035349.1' => 'oeu', 'Oeu049791.1' => 'oeu', 'Os01g0774500' => 'osa', 'Os03g0628800' => 'osa', 'Os03g0798600' => 'osa', 'Os05g0508800' => 'osa', 'Peaxi162Scf00036g02018' => 'pax', 'Peaxi162Scf00578g00032' => 'pax', 'Peaxi162Scf00578g00317' => 'pax', 'Peaxi162Scf00785g00114' => 'pax', 'Peaxi162Scf00813g00119' => 'pax', 'Peaxi162Scf00906g00227' => 'pax', 'PGR004G0875' => 'pgr', 'PGR004G2424' => 'pgr', 'PGR031G1239' => 'pgr', 'PGR031G2474' => 'pgr', 'PGR044G0423' => 'pgr', 'PGSC0003DMG400001128' => 'stu', 'PGSC0003DMG400007336' => 'stu', 'PGSC0003DMG400016318' => 'stu', 'PGSC0003DMG400016319' => 'stu', 'PGSC0003DMG400018074' => 'stu', 'Phvul.001G157700' => 'pvu', 'Phvul.002G148550' => 'pvu', 'Phvul.002G320200' => 'pvu', 'Phvul.003G089200' => 'pvu', 'Phvul.007G126000' => 'pvu', 'Phvul.007G126100' => 'pvu', 'Phvul.007G178000' => 'pvu', 'Phvul.007G178200' => 'pvu', 'Potri.002G043000' => 'ptr', 'Potri.002G043200' => 'ptr', 'Potri.003G123750' => 'ptr', 'Potri.005G055401' => 'ptr', 'Potri.005G219700' => 'ptr', 'Potri.005G220000' => 'ptr', 'Potri.008G161901' => 'ptr', 'Potri.008G162000' => 'ptr', 'Potri.008G162400' => 'ptr', 'Potri.010G076900' => 'ptr', 'Pp3c12_9180' => 'ppa', 'Pp3c13_19770' => 'ppa', 'Pp3c14_22950' => 'ppa', 'Pp3c16_12160' => 'ppa', 'Pp3c27_7820' => 'ppa', 'Pp3c2_3490' => 'ppa', 'Pp3c3_23700' => 'ppa', 'Pp3c3_36520' => 'ppa', 'Pp3c4_15250' => 'ppa', 'PRCOL_00007002' => 'pco', 'Prupe.1G030600' => 'ppe', 'Prupe.1G030700' => 'ppe', 'Prupe.6G345200' => 'ppe', 'Prupe.8G230300' => 'ppe', 'Prupe.8G230500' => 'ppe', 'Psat3g059600' => 'psa', 'Psat5g200920' => 'psa', 'Psat6g056440' => 'psa', 'Psat6g057360' => 'psa', 'Psat6g134120' => 'psa', 'Psat6g134160' => 'psa', 'Psat7g008640' => 'psa', 'Psat7g185240' => 'psa', 'PSO017G1330' => 'pso', 'PSO063G6097' => 'pso', 'PSO170G0835' => 'pso', 'PSO170G2499' => 'pso', 'PSO210G5058' => 'pso', 'PSO210G6154' => 'pso', 'PSO585G0031' => 'pso', 'PSO832G0264' => 'pso', 'PSO832G4288' => 'pso', 'QL03p027355' => 'qlo', 'QL03p027430' => 'qlo', 'QL04p081380' => 'qlo', 'QL06p015642' => 'qlo', 'QL06p015650' => 'qlo', 'QL06p015686' => 'qlo', 'QL12p042927' => 'qlo', 'QL93p1863_0035' => 'qlo', 'RcHm_v2.0_Chr3g0450581' => 'rch', 'RcHm_v2.0_Chr4g0390371' => 'rch', 'RcHm_v2.0_Chr4g0390381' => 'rch', 'RcHm_v2.0_Chr4g0390491' => 'rch', 'RcHm_v2.0_Chr4g0390501' => 'rch', 'RcHm_v2.0_Chr6g0289231' => 'rch', 'Rhsim04G0190400' => 'rsi', 'Rhsim04G0190500' => 'rsi', 'Rhsim04G0190600' => 'rsi', 'Rhsim13G0031400' => 'rsi', 'Rhsim13G0165600' => 'rsi', 'RhsimUnG0114600' => 'rsi', 'RhsimUnG0114700' => 'rsi', 'Sabra02G0034800' => 'sbr', 'Sabra02G0035100' => 'sbr', 'Sabra05G0168600' => 'sbr', 'Sabra05G0168800' => 'sbr', 'Sabra08G0123700' => 'sbr', 'Sabra10G0031900' => 'sbr', 'Sabra13G0039000' => 'sbr', 'SalBow2G0782' => 'sbo', 'SalBow2G1403' => 'sbo', 'SalBow4G0074' => 'sbo', 'SalBow4G2635' => 'sbo', 'SalBow5G3010' => 'sbo', 'Sc05g0000870' => 'sci', 'Sc05g0000890' => 'sci', 'Sc13g0005000' => 'sci', 'Sc13g0005030' => 'sci', 'Sc19g0003790' => 'sci', 'Sc19g0003800' => 'sci', 'Sed0003467' => 'sed', 'Sed0009355' => 'sed', 'Sed0009894' => 'sed', 'Sed0011972' => 'sed', 'Sed0021483' => 'sed', 'Sed0021750' => 'sed', 'Sed0026279' => 'sed', 'SEGI_05312' => 'sgi', 'SEGI_10112' => 'sgi', 'SEGI_15835' => 'sgi', 'SEGI_30386' => 'sgi', 'SEGI_34122' => 'sgi', 'SEGI_35063' => 'sgi', 'SGA_v2.0_scaffold101G29794' => 'sas', 'SGA_v2.0_scaffold1G00573' => 'sas', 'SGA_v2.0_scaffold79G25637' => 'sas', 'SGA_v2.0_scaffold88G27283' => 'sas', 'SGA_v2.0_scaffold88G27285' => 'sas', 'SGA_v2.0_scaffold88G27331' => 'sas', 'SHI09937' => 'shi', 'SMO119G0302' => 'smo', 'SMO137G0231' => 'smo', 'SMO367G1151' => 'smo', 'Solyc02g082000.3' => 'sly', 'Solyc06g031670.3' => 'sly', 'Solyc06g053810.3' => 'sly', 'Solyc07g025457.1' => 'sly', 'Solyc08g059740.1' => 'sly', 'Solyc08g059750.3' => 'sly', 'Solyc09g083370.3' => 'sly', 'Solyc12g038950.3' => 'sly', 'Sopen02g026630' => 'spe', 'Sopen06g018930' => 'spe', 'Sopen06g018940' => 'spe', 'Sopen08g009460' => 'spe', 'Sopen09g032290' => 'spe', 'Sp1g03080' => 'spa', 'Sp1g03090' => 'spa', 'Sp1g05480' => 'spa', 'Sp2g07860' => 'spa', 'Sp2g08430' => 'spa', 'Sp2g08440' => 'spa', 'Sp2g26200' => 'spa', 'Sp4g13170' => 'spa', 'Sp6g33840' => 'spa', 'SpUn1204_0010' => 'spa', 'TAR365G0908' => 'tar', 'TAR381G1270' => 'tar', 'TAR381G1651' => 'tar', 'TAR625G1131' => 'tar', 'TAR633G0962' => 'tar', 'TAR633G1729' => 'tar', 'TAR633G1864' => 'tar', 'TAR636G0221' => 'tar', 'TAR636G0314' => 'tar', 'TAR636G3202' => 'tar', 'THA.LOC104800805' => 'tha', 'THA.LOC104801096' => 'tha', 'THA.LOC104801555' => 'tha', 'THA.LOC104808491' => 'tha', 'THA.LOC104808595' => 'tha', 'THA.LOC104815985' => 'tha', 'THA.LOC104822250' => 'tha', 'THA.LOC104826071' => 'tha', 'Thecc.01G265200' => 'tca', 'Thecc.01G265300' => 'tca', 'Thecc.01G265700' => 'tca', 'Thecc.03G109100' => 'tca', 'Thecc.04G245900' => 'tca', 'Thecc.04G246000' => 'tca', 'Thhalv10003334m.g' => 'esa', 'Thhalv10005508m.g' => 'esa', 'Thhalv10005643m.g' => 'esa', 'Thhalv10007316m.g' => 'esa', 'Thhalv10009006m.g' => 'esa', 'Thhalv10009309m.g' => 'esa', 'Thhalv10014917m.g' => 'esa', 'Thhalv10014919m.g' => 'esa', 'Thhalv10015393m.g' => 'esa', 'Thhalv10016515m.g' => 'esa', 'Thhalv10029242m.g' => 'esa', 'TPR.G16654' => 'tpr', 'TPR.G20589' => 'tpr', 'TPR.G23029' => 'tpr', 'TPR.G27731' => 'tpr', 'TPR.G28889' => 'tpr', 'TPR.G28899' => 'tpr', 'TPR.G30846' => 'tpr', 'TPR.G5452' => 'tpr', 'TPR.G5713' => 'tpr', 'TPR.G9046' => 'tpr', 'TPR.G9061' => 'tpr', 'TWI09G1075' => 'twi', 'TWI12G0806' => 'twi', 'TWI18G0108' => 'twi', 'TWI53G1361' => 'twi', 'TWI73G0185' => 'twi', 'TWI73G0427' => 'twi', 'unitig_37.g12001' => 'ugi', 'unitig_747.g21660' => 'ugi', 'unitig_748.g7232' => 'ugi', 'unitig_748.g7315' => 'ugi', 'unitig_85.g27262' => 'ugi', 'unitig_92.g28220' => 'ugi', 'vmacro02632' => 'vma', 'vmacro08410' => 'vma', 'vmacro08411' => 'vma', 'vmacro15407' => 'vma', 'VMungo0251G3619' => 'vmu', 'VMungo0720G1204' => 'vmu', 'VMungo0720G1918' => 'vmu', 'VMungo0720G2387' => 'vmu', 'VMungo0720G2961' => 'vmu', 'VMungo1215G2154' => 'vmu', 'VMungo1383G2411' => 'vmu', 'Zm00001eb051130' => 'zma', 'Zm00001eb116830' => 'zma', 'Zm00001eb116850' => 'zma', 'Zm00001eb151740' => 'zma', 'Zm00001eb292360' => 'zma', 'Zm00001eb301640' => 'zma' ) $gf_id = 'HOM05D000856' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000856' ) $data_identifier = 'HOM05D000856' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 13, 'ath' => (int) 10, 'atr' => (int) 1, 'acertr' => (int) 8, 'cqu' => (int) 6, 'bca' => (int) 21, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 11, 'car' => (int) 9, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 8, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 5, 'fan' => (int) 16, 'fve' => (int) 6, 'gma' => (int) 11, 'ghi' => (int) 19, 'gra' => (int) 9, 'vvi' => (int) 7, 'han' => (int) 17, 'cav' => (int) 5, 'hma' => (int) 2, 'vpl' => (int) 2, 'sun' => (int) 7, 'lal' => (int) 9, 'lja' => (int) 5, 'lonja' => (int) 9, 'lsa' => (int) 5, 'mes' => (int) 8, 'mpo' => (int) 3, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 10, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 15, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 9, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 9, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 6, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 5, 'spa' => (int) 10, 'tar' => (int) 10, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 11, 'tpr' => (int) 11, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 4, 'vmu' => (int) 7, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb301640' $species_info = array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ) $local_species = 'bol' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000856', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p00010' => 'bna', 'A03p04160' => 'bna', 'A03p17160' => 'bna', 'A04p23370' => 'bna', 'A05p14860' => 'bna', 'A08p37020' => 'bna', 'A09p08050' => 'bna', 'A09p66800' => 'bna', 'A09p67940' => 'bna', 'A10p02680' => 'bna', 'A10p05320' => 'bna', 'Aa31LG1G20560' => 'aar', 'Aa31LG1G20610' => 'aar', 'Aa31LG1G7810' => 'aar', 'Aa31LG5G3590' => 'aar', 'Aa31LG5G6140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3819' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4683' => 'aag', 'Actinidia04480' => 'ach', 'Actinidia05466' => 'ach', 'Actinidia08445' => 'ach', 'Actinidia21170' => 'ach', 'Actinidia24812' => 'ach', 'Actinidia24951' => 'ach', 'Actinidia40088' => 'ach', 'Ah.02g111660' => 'amhyb', 'Ah.11g048900' => 'amhyb', 'Ah.11g049910' => 'amhyb', 'AL1G13870' => 'aly', 'AL1G13880' => 'aly', 'AL1G16760' => 'aly', 'AL390U10020' => 'aly', 'AL4G25520' => 'aly', 'AL6G19890' => 'aly', 'AL6G19900' => 'aly', 'AL6G19910' => 'aly', 'AL8G40100' => 'aly', 'Aqoxy2G03562' => 'aox', 'Aqoxy5G00316' => 'aox', 'Aqoxy5G00926' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1628KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1H403S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2FU6SJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.882I6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8YRY2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YN1SN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AF70II' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZA8L1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F916KL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHRD8H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KTZ8QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S22EMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8M29T' => 'arhy', 'AT1G04270' => 'ath', 'AT1G04280' => 'ath', 'AT1G06750' => 'ath', 'AT1G33850' => 'ath', 'AT2G30630' => 'ath', 'AT5G09490' => 'ath', 'AT5G09500' => 'ath', 'AT5G09510' => 'ath', 'AT5G43640' => 'ath', 'AT5G63070' => 'ath', 'ATR0605G315' => 'atr', 'Atru.chr11.175' => 'acertr', 'Atru.chr11.653' => 'acertr', 'Atru.chr3.1616' => 'acertr', 'Atru.chr4.2230' => 'acertr', 'Atru.chr4.2232' => 'acertr', 'Atru.chr5.1598' => 'acertr', 'Atru.chr5.1600' => 'acertr', 'Atru.chr5.2188' => 'acertr', 'AUR62008326' => 'cqu', 'AUR62011922' => 'cqu', 'AUR62011924' => 'cqu', 'AUR62021771' => 'cqu', 'AUR62032237' => 'cqu', 'AUR62032240' => 'cqu', 'BcaB01g05572' => 'bca', 'BcaB02g10337' => 'bca', 'BcaB04g19944' => 'bca', 'BcaB05g21548' => 'bca', 'BcaB05g21549' => 'bca', 'BcaB05g23227' => 'bca', 'BcaB06g26256' => 'bca', 'BcaB06g26257' => 'bca', 'BcaB06g28379' => 'bca', 'BcaC02g11159' => 'bca', 'BcaC03g13258' => 'bca', 'BcaC03g13259' => 'bca', 'BcaC05g24456' => 'bca', 'BcaC05g24457' => 'bca', 'BcaC07g36922' => 'bca', 'BcaC07g36923' => 'bca', 'BcaC07g42050' => 'bca', 'BcaC07g42176' => 'bca', 'BcaC07g42195' => 'bca', 'BcaC07g42196' => 'bca', 'BcaNung06674' => 'bca', 'BolC2t06351H' => 'bol', 'BolC2t06352H' => 'bol', 'BolC3t12993H' => 'bol', 'BolC4t23525H' => 'bol', 'BolC4t27475H' => 'bol', 'BolC5t29025H' => 'bol', 'BolC5t29026H' => 'bol', 'BolC8t46898H' => 'bol', 'BolC8t46899H' => 'bol', 'BolC8t52630H' => 'bol', 'BolC8t52765H' => 'bol', 'BolC9t53824H' => 'bol', 'BraA03t09760Z' => 'bra', 'BraA03t10990Z' => 'bra', 'BraA05t20413Z' => 'bra', 'BraA08t35602Z' => 'bra', 'BraA09t36458Z' => 'bra', 'BraA09t42018Z' => 'bra', 'BraA09t42129Z' => 'bra', 'BraA10t42536Z' => 'bra', 'BraA10t42537Z' => 'bra', 'C01p10690' => 'bna', 'C02p03890' => 'bna', 'C02p03900' => 'bna', 'C03p04620' => 'bna', 'C04p19870' => 'bna', 'C04p59670' => 'bna', 'C05p02460' => 'bna', 'C05p02470' => 'bna', 'C08p00980' => 'bna', 'C08p00990' => 'bna', 'C08p51030' => 'bna', 'C08p52360' => 'bna', 'C09p09120' => 'bna', 'CAN.G19.15' => 'can', 'CAN.G251.10' => 'can', 'CAN.G251.9' => 'can', 'CAN.G398.24' => 'can', 'CAN.G410.32' => 'can', 'CAN.G881.2' => 'can', 'CANSAT01G3025' => 'cansat', 'CANSAT78G1211' => 'cansat', 'CANSAT78G1218' => 'cansat', 'CANSAT78G1521' => 'cansat', 'CANSAT78G1670' => 'cansat', 'CARHR003600' => 'chi', 'CARHR003610' => 'chi', 'CARHR006290' => 'chi', 'CARHR006430' => 'chi', 'CARHR124110' => 'chi', 'CARHR203870' => 'chi', 'CARHR203880' => 'chi', 'CARHR203890' => 'chi', 'CARHR276880' => 'chi', 'Carub.0001s0346' => 'cru', 'Carub.0001s0347' => 'cru', 'Carub.0001s0607' => 'cru', 'Carub.0003s2768' => 'cru', 'Carub.0003s2769' => 'cru', 'Carub.0004s1178' => 'cru', 'Carub.0006s0806' => 'cru', 'Carub.0006s0807' => 'cru', 'Carub.0006s0808' => 'cru', 'Carub.0008s0501' => 'cru', 'Carub.0008s2379' => 'cru', 'Ca_08655_v3' => 'car', 'Ca_08922_v3' => 'car', 'Ca_08923_v3' => 'car', 'Ca_09119_v3' => 'car', 'Ca_09703_v3' => 'car', 'Ca_09705_v3' => 'car', 'Ca_09835_v3' => 'car', 'Ca_26403_v3' => 'car', 'Ca_30719_v3' => 'car', 'CBR_g17958' => 'cbr', 'CBR_g40516' => 'cbr', 'Cc00_g05350' => 'ccan', 'Cc01_g18690' => 'ccan', 'Cc03_g04830' => 'ccan', 'Cc03_g04850' => 'ccan', 'CDE02G4469' => 'cde', 'CDE06G0883' => 'cde', 'CDE06G1295' => 'cde', 'CDE06G1390' => 'cde', 'CDE07G0584' => 'cde', 'CDE07G1084' => 'cde', 'CDE08G1259' => 'cde', 'Cfa002341' => 'cfa', 'Cfa024337' => 'cfa', 'Ciclev10004749m.g' => 'ccl', 'Ciclev10006127m.g' => 'ccl', 'Ciclev10019720m.g' => 'ccl', 'Ciclev10022652m.g' => 'ccl', 'CiPaw.01G190400' => 'cil', 'CiPaw.01G190500' => 'cil', 'CiPaw.02G116400' => 'cil', 'CiPaw.02G116500' => 'cil', 'CiPaw.04G183000' => 'cil', 'CiPaw.04G183300' => 'cil', 'ClCG05G004610' => 'cla', 'ClCG05G004620' => 'cla', 'ClCG06G006730' => 'cla', 'ClCG06G006740' => 'cla', 'ClCG11G003690' => 'cla', 'COL.COLO4_08276' => 'col', 'COL.COLO4_08277' => 'col', 'COL.COLO4_15787' => 'col', 'COL.COLO4_15789' => 'col', 'Cpa.g.c44815' => 'cpa', 'Cpa.g.sc52.144' => 'cpa', 'Cpa.g.sc58.46' => 'cpa', 'Cpa.g.sc58.47' => 'cpa', 'Cre08.g360900' => 'cre', 'CsaV3_2G013030' => 'csa', 'CsaV3_2G013050' => 'csa', 'CsaV3_2G015620' => 'csa', 'CsaV3_3G012590' => 'csa', 'CsaV3_3G012600' => 'csa', 'CSS0001641' => 'camsi', 'CSS0008310' => 'camsi', 'CSS0013011' => 'camsi', 'CSS0017147' => 'camsi', 'CSS0022970' => 'camsi', 'CSS0025655' => 'camsi', 'CSS0028665' => 'camsi', 'CSS0029117' => 'camsi', 'CSS0032024' => 'camsi', 'CSS0039681' => 'camsi', 'CSS0046516' => 'camsi', 'CSS0050307' => 'camsi', 'DCAR_005871' => 'dca', 'DCAR_007342' => 'dca', 'DCAR_024228' => 'dca', 'DCAR_027277' => 'dca', 'DCAR_030718' => 'dca', 'Dinv20287' => 'din', 'Dinv22461' => 'din', 'Dinv22464' => 'din', 'Dinv29912' => 'din', 'Dinv29913' => 'din', 'Dinv34580' => 'din', 'Dinv34582' => 'din', 'Dinv44632' => 'din', 'Duzib052G0266' => 'dzi', 'Duzib133G0907' => 'dzi', 'Duzib133G1034' => 'dzi', 'Duzib138G0207' => 'dzi', 'Duzib138G0491' => 'dzi', 'Duzib151G0812' => 'dzi', 'Duzib151G1166' => 'dzi', 'Duzib168G0192' => 'dzi', 'Duzib211G0077' => 'dzi', 'Duzib212G0429' => 'dzi', 'Duzib212G0472' => 'dzi', 'ECA233G2617' => 'eca', 'ECA236G4188' => 'eca', 'ECA240G0936' => 'eca', 'ECA240G1129' => 'eca', 'ECA247G0623' => 'eca', 'EL10Ac5g10451' => 'bvu', 'EL10Ac5g10453' => 'bvu', 'EL10Ac5g10894' => 'bvu', 'Eucgr.H00192' => 'egr', 'Eucgr.H00193' => 'egr', 'Eucgr.H00194' => 'egr', 'Eucgr.J01562' => 'egr', 'Eucgr.K03301' => 'egr', 'FAN02G0632' => 'fan', 'FAN05G5378' => 'fan', 'FAN09G3247' => 'fan', 'FAN12G0435' => 'fan', 'FAN12G2426' => 'fan', 'FAN14G1707' => 'fan', 'FAN14G4725' => 'fan', 'FAN15G2071' => 'fan', 'FAN17G3065' => 'fan', 'FAN19G1376' => 'fan', 'FAN20G0354' => 'fan', 'FAN20G2429' => 'fan', 'FAN20G2658' => 'fan', 'FAN24G2343' => 'fan', 'FAN27G2362' => 'fan', 'FAN28G1765' => 'fan', 'FvH4_1g16020' => 'fve', 'FvH4_2g04890' => 'fve', 'FvH4_2g22270' => 'fve', 'FvH4_4g02630' => 'fve', 'FvH4_4g02640' => 'fve', 'FvH4_6g02650' => 'fve', 'Glyma.02G140600' => 'gma', 'Glyma.03G159900' => 'gma', 'Glyma.05G234800' => 'gma', 'Glyma.07G269600' => 'gma', 'Glyma.08G042300' => 'gma', 'Glyma.10G033500' => 'gma', 'Glyma.10G185200' => 'gma', 'Glyma.17G004300' => 'gma', 'Glyma.19G161900' => 'gma', 'Glyma.20G205100' => 'gma', 'Glyma.20G205200' => 'gma', 'Gohir.A01G139101' => 'ghi', 'Gohir.A02G035600' => 'ghi', 'Gohir.A02G117901' => 'ghi', 'Gohir.A07G210100' => 'ghi', 'Gohir.A07G210200' => 'ghi', 'Gohir.A08G061100' => 'ghi', 'Gohir.A09G223000' => 'ghi', 'Gohir.A09G223100' => 'ghi', 'Gohir.A10G113900' => 'ghi', 'Gohir.A10G114000' => 'ghi', 'Gohir.D02G042300' => 'ghi', 'Gohir.D07G216100' => 'ghi', 'Gohir.D07G216200' => 'ghi', 'Gohir.D08G070400' => 'ghi', 'Gohir.D09G225000' => 'ghi', 'Gohir.D09G225100' => 'ghi', 'Gohir.D10G152300' => 'ghi', 'Gohir.D10G153200' => 'ghi', 'Gohir.D11G133701' => 'ghi', 'Gorai.004G074100' => 'gra', 'Gorai.005G046800' => 'gra', 'Gorai.006G246500' => 'gra', 'Gorai.006G246600' => 'gra', 'Gorai.007G142900' => 'gra', 'Gorai.011G171000' => 'gra', 'Gorai.011G171100' => 'gra', 'Gorai.013G104300' => 'gra', 'Gorai.013G104400' => 'gra', 'GSVIVG01000754001' => 'vvi', 'GSVIVG01000756001' => 'vvi', 'GSVIVG01010903001' => 'vvi', 'GSVIVG01017623001' => 'vvi', 'GSVIVG01018113001' => 'vvi', 'GSVIVG01018116001' => 'vvi', 'GSVIVG01018118001' => 'vvi', 'HanXRQChr03g0076211' => 'han', 'HanXRQChr03g0092431' => 'han', 'HanXRQChr03g0092441' => 'han', 'HanXRQChr03g0092591' => 'han', 'HanXRQChr03g0092671' => 'han', 'HanXRQChr03g0092681' => 'han', 'HanXRQChr03g0092691' => 'han', 'HanXRQChr03g0092701' => 'han', 'HanXRQChr03g0092721' => 'han', 'HanXRQChr03g0092731' => 'han', 'HanXRQChr04g0113681' => 'han', 'HanXRQChr10g0281371' => 'han', 'HanXRQChr11g0337141' => 'han', 'HanXRQChr13g0424521' => 'han', 'HanXRQChr13g0424531' => 'han', 'HanXRQChr13g0424541' => 'han', 'HanXRQChr16g0498221' => 'han', 'Haze_04377' => 'cav', 'Haze_11298' => 'cav', 'Haze_24547' => 'cav', 'Haze_24550' => 'cav', 'Haze_26587' => 'cav', 'Hma1.2p1_0650F.1_g195410' => 'hma', 'Hma1.2p1_0893F.1_g233470' => 'hma', 'HPP92_006508' => 'vpl', 'HPP92_024780' => 'vpl', 'Hund02688' => 'sun', 'Hund09380' => 'sun', 'Hund09381' => 'sun', 'Hund09832' => 'sun', 'Hund09833' => 'sun', 'Hund11351' => 'sun', 'Hund11513' => 'sun', 'Lalb_Chr06g0162591' => 'lal', 'Lalb_Chr06g0162601' => 'lal', 'Lalb_Chr06g0169321' => 'lal', 'Lalb_Chr09g0330951' => 'lal', 'Lalb_Chr16g0387631' => 'lal', 'Lalb_Chr21g0306241' => 'lal', 'Lalb_Chr25g0290051' => 'lal', 'Lalb_Chr25g0290061' => 'lal', 'Lalb_Chr25g0290071' => 'lal', 'Lj1g0003876' => 'lja', 'Lj1P1207T36' => 'lonja', 'Lj2C1156G12' => 'lonja', 'Lj3A793G39' => 'lonja', 'Lj3C580G2' => 'lonja', 'Lj3C780G2' => 'lonja', 'Lj3C780T4' => 'lonja', 'Lj3C793G9' => 'lonja', 'Lj4g0012960' => 'lja', 'Lj5g0021252' => 'lja', 'Lj5g0021484' => 'lja', 'Lj5g0024528' => 'lja', 'Lj6A399T12' => 'lonja', 'Lj6A656G65' => 'lonja', 'Lsat_1_v5_gn_3_125500' => 'lsa', 'Lsat_1_v5_gn_3_125540' => 'lsa', 'Lsat_1_v5_gn_5_72701' => 'lsa', 'Lsat_1_v5_gn_8_91560' => 'lsa', 'Lsat_1_v5_gn_9_9640' => 'lsa', 'Manes.01G200600' => 'mes', 'Manes.01G200700' => 'mes', 'Manes.03G168900' => 'mes', 'Manes.03G169000' => 'mes', 'Manes.05G085801' => 'mes', 'Manes.05G086200' => 'mes', 'Manes.15G036700' => 'mes', 'Manes.15G036900' => 'mes', 'Mapoly0004s0172' => 'mpo', 'Mapoly0023s0001' => 'mpo', 'Mapoly0142s0012' => 'mpo', 'MBI01_g32854_MAGBIO' => 'mbi', 'MBI11_g24427_MAGBIO' => 'mbi', 'MBI11_g47319_MAGBIO' => 'mbi', 'MCO01G433' => 'mco', 'MD00G1187800' => 'mdo', 'MD04G1226500' => 'mdo', 'MD05G1203900' => 'mdo', 'MD10G1191100' => 'mdo', 'MD12G1243500' => 'mdo', 'MD13G1207000' => 'mdo', 'MD13G1207100' => 'mdo', 'MD16G1208600' => 'mdo', 'Medtr1g050352' => 'mtr', 'Medtr1g070385' => 'mtr', 'Medtr1g070450' => 'mtr', 'Medtr1g075200' => 'mtr', 'Medtr1g075250' => 'mtr', 'Medtr1g075260' => 'mtr', 'Medtr1g475250' => 'mtr', 'Medtr4g075450' => 'mtr', 'Medtr7g096300' => 'mtr', 'Medtr8g105110' => 'mtr', 'MELO3C006470.2' => 'cme', 'MELO3C006471.2' => 'cme', 'MELO3C020772.2' => 'cme', 'MELO3C026780.2' => 'cme', 'MELO3C026781.2' => 'cme', 'Migut.D00390' => 'egut', 'Migut.G00435' => 'egut', 'Migut.G00436' => 'egut', 'Migut.G00718' => 'egut', 'MSTRG.21891' => 'ama', 'MSTRG.26910' => 'ama', 'MSTRG.4099' => 'ama', 'MSTRG.9925' => 'ama', 'Nitab4.5_0000165g0010' => 'nta', 'Nitab4.5_0000209g0180' => 'nta', 'Nitab4.5_0000244g0440' => 'nta', 'Nitab4.5_0000525g0220' => 'nta', 'Nitab4.5_0001597g0020' => 'nta', 'Nitab4.5_0001878g0040' => 'nta', 'Nitab4.5_0001878g0060' => 'nta', 'Nitab4.5_0002838g0100' => 'nta', 'Nitab4.5_0002838g0120' => 'nta', 'Nitab4.5_0004798g0030' => 'nta', 'Nitab4.5_0005420g0010' => 'nta', 'Nitab4.5_0005507g0010' => 'nta', 'Nitab4.5_0005574g0020' => 'nta', 'Nitab4.5_0005838g0010' => 'nta', 'Nitab4.5_0010580g0020' => 'nta', 'Nn1g02599' => 'nnu', 'Nn1g02608' => 'nnu', 'Nn3g17742' => 'nnu', 'Nn3g19534' => 'nnu', 'Nn3g19535' => 'nnu', 'Oeu008790.1' => 'oeu', 'Oeu008792.1' => 'oeu', 'Oeu032590.1' => 'oeu', 'Oeu035349.1' => 'oeu', 'Oeu049791.1' => 'oeu', 'Os01g0774500' => 'osa', 'Os03g0628800' => 'osa', 'Os03g0798600' => 'osa', 'Os05g0508800' => 'osa', 'Peaxi162Scf00036g02018' => 'pax', 'Peaxi162Scf00578g00032' => 'pax', 'Peaxi162Scf00578g00317' => 'pax', 'Peaxi162Scf00785g00114' => 'pax', 'Peaxi162Scf00813g00119' => 'pax', 'Peaxi162Scf00906g00227' => 'pax', 'PGR004G0875' => 'pgr', 'PGR004G2424' => 'pgr', 'PGR031G1239' => 'pgr', 'PGR031G2474' => 'pgr', 'PGR044G0423' => 'pgr', 'PGSC0003DMG400001128' => 'stu', 'PGSC0003DMG400007336' => 'stu', 'PGSC0003DMG400016318' => 'stu', 'PGSC0003DMG400016319' => 'stu', 'PGSC0003DMG400018074' => 'stu', 'Phvul.001G157700' => 'pvu', 'Phvul.002G148550' => 'pvu', 'Phvul.002G320200' => 'pvu', 'Phvul.003G089200' => 'pvu', 'Phvul.007G126000' => 'pvu', 'Phvul.007G126100' => 'pvu', 'Phvul.007G178000' => 'pvu', 'Phvul.007G178200' => 'pvu', 'Potri.002G043000' => 'ptr', 'Potri.002G043200' => 'ptr', 'Potri.003G123750' => 'ptr', 'Potri.005G055401' => 'ptr', 'Potri.005G219700' => 'ptr', 'Potri.005G220000' => 'ptr', 'Potri.008G161901' => 'ptr', 'Potri.008G162000' => 'ptr', 'Potri.008G162400' => 'ptr', 'Potri.010G076900' => 'ptr', 'Pp3c12_9180' => 'ppa', 'Pp3c13_19770' => 'ppa', 'Pp3c14_22950' => 'ppa', 'Pp3c16_12160' => 'ppa', 'Pp3c27_7820' => 'ppa', 'Pp3c2_3490' => 'ppa', 'Pp3c3_23700' => 'ppa', 'Pp3c3_36520' => 'ppa', 'Pp3c4_15250' => 'ppa', 'PRCOL_00007002' => 'pco', 'Prupe.1G030600' => 'ppe', 'Prupe.1G030700' => 'ppe', 'Prupe.6G345200' => 'ppe', 'Prupe.8G230300' => 'ppe', 'Prupe.8G230500' => 'ppe', 'Psat3g059600' => 'psa', 'Psat5g200920' => 'psa', 'Psat6g056440' => 'psa', 'Psat6g057360' => 'psa', 'Psat6g134120' => 'psa', 'Psat6g134160' => 'psa', 'Psat7g008640' => 'psa', 'Psat7g185240' => 'psa', 'PSO017G1330' => 'pso', 'PSO063G6097' => 'pso', 'PSO170G0835' => 'pso', 'PSO170G2499' => 'pso', 'PSO210G5058' => 'pso', 'PSO210G6154' => 'pso', 'PSO585G0031' => 'pso', 'PSO832G0264' => 'pso', 'PSO832G4288' => 'pso', 'QL03p027355' => 'qlo', 'QL03p027430' => 'qlo', 'QL04p081380' => 'qlo', 'QL06p015642' => 'qlo', 'QL06p015650' => 'qlo', 'QL06p015686' => 'qlo', 'QL12p042927' => 'qlo', 'QL93p1863_0035' => 'qlo', 'RcHm_v2.0_Chr3g0450581' => 'rch', 'RcHm_v2.0_Chr4g0390371' => 'rch', 'RcHm_v2.0_Chr4g0390381' => 'rch', 'RcHm_v2.0_Chr4g0390491' => 'rch', 'RcHm_v2.0_Chr4g0390501' => 'rch', 'RcHm_v2.0_Chr6g0289231' => 'rch', 'Rhsim04G0190400' => 'rsi', 'Rhsim04G0190500' => 'rsi', 'Rhsim04G0190600' => 'rsi', 'Rhsim13G0031400' => 'rsi', 'Rhsim13G0165600' => 'rsi', 'RhsimUnG0114600' => 'rsi', 'RhsimUnG0114700' => 'rsi', 'Sabra02G0034800' => 'sbr', 'Sabra02G0035100' => 'sbr', 'Sabra05G0168600' => 'sbr', 'Sabra05G0168800' => 'sbr', 'Sabra08G0123700' => 'sbr', 'Sabra10G0031900' => 'sbr', 'Sabra13G0039000' => 'sbr', 'SalBow2G0782' => 'sbo', 'SalBow2G1403' => 'sbo', 'SalBow4G0074' => 'sbo', 'SalBow4G2635' => 'sbo', 'SalBow5G3010' => 'sbo', 'Sc05g0000870' => 'sci', 'Sc05g0000890' => 'sci', 'Sc13g0005000' => 'sci', 'Sc13g0005030' => 'sci', 'Sc19g0003790' => 'sci', 'Sc19g0003800' => 'sci', 'Sed0003467' => 'sed', 'Sed0009355' => 'sed', 'Sed0009894' => 'sed', 'Sed0011972' => 'sed', 'Sed0021483' => 'sed', 'Sed0021750' => 'sed', 'Sed0026279' => 'sed', 'SEGI_05312' => 'sgi', 'SEGI_10112' => 'sgi', 'SEGI_15835' => 'sgi', 'SEGI_30386' => 'sgi', 'SEGI_34122' => 'sgi', 'SEGI_35063' => 'sgi', 'SGA_v2.0_scaffold101G29794' => 'sas', 'SGA_v2.0_scaffold1G00573' => 'sas', 'SGA_v2.0_scaffold79G25637' => 'sas', 'SGA_v2.0_scaffold88G27283' => 'sas', 'SGA_v2.0_scaffold88G27285' => 'sas', 'SGA_v2.0_scaffold88G27331' => 'sas', 'SHI09937' => 'shi', 'SMO119G0302' => 'smo', 'SMO137G0231' => 'smo', 'SMO367G1151' => 'smo', 'Solyc02g082000.3' => 'sly', 'Solyc06g031670.3' => 'sly', 'Solyc06g053810.3' => 'sly', 'Solyc07g025457.1' => 'sly', 'Solyc08g059740.1' => 'sly', 'Solyc08g059750.3' => 'sly', 'Solyc09g083370.3' => 'sly', 'Solyc12g038950.3' => 'sly', 'Sopen02g026630' => 'spe', 'Sopen06g018930' => 'spe', 'Sopen06g018940' => 'spe', 'Sopen08g009460' => 'spe', 'Sopen09g032290' => 'spe', 'Sp1g03080' => 'spa', 'Sp1g03090' => 'spa', 'Sp1g05480' => 'spa', 'Sp2g07860' => 'spa', 'Sp2g08430' => 'spa', 'Sp2g08440' => 'spa', 'Sp2g26200' => 'spa', 'Sp4g13170' => 'spa', 'Sp6g33840' => 'spa', 'SpUn1204_0010' => 'spa', 'TAR365G0908' => 'tar', 'TAR381G1270' => 'tar', 'TAR381G1651' => 'tar', 'TAR625G1131' => 'tar', 'TAR633G0962' => 'tar', 'TAR633G1729' => 'tar', 'TAR633G1864' => 'tar', 'TAR636G0221' => 'tar', 'TAR636G0314' => 'tar', 'TAR636G3202' => 'tar', 'THA.LOC104800805' => 'tha', 'THA.LOC104801096' => 'tha', 'THA.LOC104801555' => 'tha', 'THA.LOC104808491' => 'tha', 'THA.LOC104808595' => 'tha', 'THA.LOC104815985' => 'tha', 'THA.LOC104822250' => 'tha', 'THA.LOC104826071' => 'tha', 'Thecc.01G265200' => 'tca', 'Thecc.01G265300' => 'tca', 'Thecc.01G265700' => 'tca', 'Thecc.03G109100' => 'tca', 'Thecc.04G245900' => 'tca', 'Thecc.04G246000' => 'tca', 'Thhalv10003334m.g' => 'esa', 'Thhalv10005508m.g' => 'esa', 'Thhalv10005643m.g' => 'esa', 'Thhalv10007316m.g' => 'esa', 'Thhalv10009006m.g' => 'esa', 'Thhalv10009309m.g' => 'esa', 'Thhalv10014917m.g' => 'esa', 'Thhalv10014919m.g' => 'esa', 'Thhalv10015393m.g' => 'esa', 'Thhalv10016515m.g' => 'esa', 'Thhalv10029242m.g' => 'esa', 'TPR.G16654' => 'tpr', 'TPR.G20589' => 'tpr', 'TPR.G23029' => 'tpr', 'TPR.G27731' => 'tpr', 'TPR.G28889' => 'tpr', 'TPR.G28899' => 'tpr', 'TPR.G30846' => 'tpr', 'TPR.G5452' => 'tpr', 'TPR.G5713' => 'tpr', 'TPR.G9046' => 'tpr', 'TPR.G9061' => 'tpr', 'TWI09G1075' => 'twi', 'TWI12G0806' => 'twi', 'TWI18G0108' => 'twi', 'TWI53G1361' => 'twi', 'TWI73G0185' => 'twi', 'TWI73G0427' => 'twi', 'unitig_37.g12001' => 'ugi', 'unitig_747.g21660' => 'ugi', 'unitig_748.g7232' => 'ugi', 'unitig_748.g7315' => 'ugi', 'unitig_85.g27262' => 'ugi', 'unitig_92.g28220' => 'ugi', 'vmacro02632' => 'vma', 'vmacro08410' => 'vma', 'vmacro08411' => 'vma', 'vmacro15407' => 'vma', 'VMungo0251G3619' => 'vmu', 'VMungo0720G1204' => 'vmu', 'VMungo0720G1918' => 'vmu', 'VMungo0720G2387' => 'vmu', 'VMungo0720G2961' => 'vmu', 'VMungo1215G2154' => 'vmu', 'VMungo1383G2411' => 'vmu', 'Zm00001eb051130' => 'zma', 'Zm00001eb116830' => 'zma', 'Zm00001eb116850' => 'zma', 'Zm00001eb151740' => 'zma', 'Zm00001eb292360' => 'zma', 'Zm00001eb301640' => 'zma' ), 'gf_id' => 'HOM05D000856', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000856' ), 'data_identifier' => 'HOM05D000856', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000856', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p00010' => 'bna', 'A03p04160' => 'bna', 'A03p17160' => 'bna', 'A04p23370' => 'bna', 'A05p14860' => 'bna', 'A08p37020' => 'bna', 'A09p08050' => 'bna', 'A09p66800' => 'bna', 'A09p67940' => 'bna', 'A10p02680' => 'bna', 'A10p05320' => 'bna', 'Aa31LG1G20560' => 'aar', 'Aa31LG1G20610' => 'aar', 'Aa31LG1G7810' => 'aar', 'Aa31LG5G3590' => 'aar', 'Aa31LG5G6140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3819' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4683' => 'aag', 'Actinidia04480' => 'ach', 'Actinidia05466' => 'ach', 'Actinidia08445' => 'ach', 'Actinidia21170' => 'ach', 'Actinidia24812' => 'ach', 'Actinidia24951' => 'ach', 'Actinidia40088' => 'ach', 'Ah.02g111660' => 'amhyb', 'Ah.11g048900' => 'amhyb', 'Ah.11g049910' => 'amhyb', 'AL1G13870' => 'aly', 'AL1G13880' => 'aly', 'AL1G16760' => 'aly', 'AL390U10020' => 'aly', 'AL4G25520' => 'aly', 'AL6G19890' => 'aly', 'AL6G19900' => 'aly', 'AL6G19910' => 'aly', 'AL8G40100' => 'aly', 'Aqoxy2G03562' => 'aox', 'Aqoxy5G00316' => 'aox', 'Aqoxy5G00926' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1628KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1H403S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2FU6SJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.882I6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8YRY2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YN1SN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AF70II' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZA8L1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F916KL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHRD8H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KTZ8QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S22EMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8M29T' => 'arhy', 'AT1G04270' => 'ath', 'AT1G04280' => 'ath', 'AT1G06750' => 'ath', 'AT1G33850' => 'ath', 'AT2G30630' => 'ath', 'AT5G09490' => 'ath', 'AT5G09500' => 'ath', 'AT5G09510' => 'ath', 'AT5G43640' => 'ath', 'AT5G63070' => 'ath', 'ATR0605G315' => 'atr', 'Atru.chr11.175' => 'acertr', 'Atru.chr11.653' => 'acertr', 'Atru.chr3.1616' => 'acertr', 'Atru.chr4.2230' => 'acertr', 'Atru.chr4.2232' => 'acertr', 'Atru.chr5.1598' => 'acertr', 'Atru.chr5.1600' => 'acertr', 'Atru.chr5.2188' => 'acertr', 'AUR62008326' => 'cqu', 'AUR62011922' => 'cqu', 'AUR62011924' => 'cqu', 'AUR62021771' => 'cqu', 'AUR62032237' => 'cqu', 'AUR62032240' => 'cqu', 'BcaB01g05572' => 'bca', 'BcaB02g10337' => 'bca', 'BcaB04g19944' => 'bca', 'BcaB05g21548' => 'bca', 'BcaB05g21549' => 'bca', 'BcaB05g23227' => 'bca', 'BcaB06g26256' => 'bca', 'BcaB06g26257' => 'bca', 'BcaB06g28379' => 'bca', 'BcaC02g11159' => 'bca', 'BcaC03g13258' => 'bca', 'BcaC03g13259' => 'bca', 'BcaC05g24456' => 'bca', 'BcaC05g24457' => 'bca', 'BcaC07g36922' => 'bca', 'BcaC07g36923' => 'bca', 'BcaC07g42050' => 'bca', 'BcaC07g42176' => 'bca', 'BcaC07g42195' => 'bca', 'BcaC07g42196' => 'bca', 'BcaNung06674' => 'bca', 'BolC2t06351H' => 'bol', 'BolC2t06352H' => 'bol', 'BolC3t12993H' => 'bol', 'BolC4t23525H' => 'bol', 'BolC4t27475H' => 'bol', 'BolC5t29025H' => 'bol', 'BolC5t29026H' => 'bol', 'BolC8t46898H' => 'bol', 'BolC8t46899H' => 'bol', 'BolC8t52630H' => 'bol', 'BolC8t52765H' => 'bol', 'BolC9t53824H' => 'bol', 'BraA03t09760Z' => 'bra', 'BraA03t10990Z' => 'bra', 'BraA05t20413Z' => 'bra', 'BraA08t35602Z' => 'bra', 'BraA09t36458Z' => 'bra', 'BraA09t42018Z' => 'bra', 'BraA09t42129Z' => 'bra', 'BraA10t42536Z' => 'bra', 'BraA10t42537Z' => 'bra', 'C01p10690' => 'bna', 'C02p03890' => 'bna', 'C02p03900' => 'bna', 'C03p04620' => 'bna', 'C04p19870' => 'bna', 'C04p59670' => 'bna', 'C05p02460' => 'bna', 'C05p02470' => 'bna', 'C08p00980' => 'bna', 'C08p00990' => 'bna', 'C08p51030' => 'bna', 'C08p52360' => 'bna', 'C09p09120' => 'bna', 'CAN.G19.15' => 'can', 'CAN.G251.10' => 'can', 'CAN.G251.9' => 'can', 'CAN.G398.24' => 'can', 'CAN.G410.32' => 'can', 'CAN.G881.2' => 'can', 'CANSAT01G3025' => 'cansat', 'CANSAT78G1211' => 'cansat', 'CANSAT78G1218' => 'cansat', 'CANSAT78G1521' => 'cansat', 'CANSAT78G1670' => 'cansat', 'CARHR003600' => 'chi', 'CARHR003610' => 'chi', 'CARHR006290' => 'chi', 'CARHR006430' => 'chi', 'CARHR124110' => 'chi', 'CARHR203870' => 'chi', 'CARHR203880' => 'chi', 'CARHR203890' => 'chi', 'CARHR276880' => 'chi', 'Carub.0001s0346' => 'cru', 'Carub.0001s0347' => 'cru', 'Carub.0001s0607' => 'cru', 'Carub.0003s2768' => 'cru', 'Carub.0003s2769' => 'cru', 'Carub.0004s1178' => 'cru', 'Carub.0006s0806' => 'cru', 'Carub.0006s0807' => 'cru', 'Carub.0006s0808' => 'cru', 'Carub.0008s0501' => 'cru', 'Carub.0008s2379' => 'cru', 'Ca_08655_v3' => 'car', 'Ca_08922_v3' => 'car', 'Ca_08923_v3' => 'car', 'Ca_09119_v3' => 'car', 'Ca_09703_v3' => 'car', 'Ca_09705_v3' => 'car', 'Ca_09835_v3' => 'car', 'Ca_26403_v3' => 'car', 'Ca_30719_v3' => 'car', 'CBR_g17958' => 'cbr', 'CBR_g40516' => 'cbr', 'Cc00_g05350' => 'ccan', 'Cc01_g18690' => 'ccan', 'Cc03_g04830' => 'ccan', 'Cc03_g04850' => 'ccan', 'CDE02G4469' => 'cde', 'CDE06G0883' => 'cde', 'CDE06G1295' => 'cde', 'CDE06G1390' => 'cde', 'CDE07G0584' => 'cde', 'CDE07G1084' => 'cde', 'CDE08G1259' => 'cde', 'Cfa002341' => 'cfa', 'Cfa024337' => 'cfa', 'Ciclev10004749m.g' => 'ccl', 'Ciclev10006127m.g' => 'ccl', 'Ciclev10019720m.g' => 'ccl', 'Ciclev10022652m.g' => 'ccl', 'CiPaw.01G190400' => 'cil', 'CiPaw.01G190500' => 'cil', 'CiPaw.02G116400' => 'cil', 'CiPaw.02G116500' => 'cil', 'CiPaw.04G183000' => 'cil', 'CiPaw.04G183300' => 'cil', 'ClCG05G004610' => 'cla', 'ClCG05G004620' => 'cla', 'ClCG06G006730' => 'cla', 'ClCG06G006740' => 'cla', 'ClCG11G003690' => 'cla', 'COL.COLO4_08276' => 'col', 'COL.COLO4_08277' => 'col', 'COL.COLO4_15787' => 'col', 'COL.COLO4_15789' => 'col', 'Cpa.g.c44815' => 'cpa', 'Cpa.g.sc52.144' => 'cpa', 'Cpa.g.sc58.46' => 'cpa', 'Cpa.g.sc58.47' => 'cpa', 'Cre08.g360900' => 'cre', 'CsaV3_2G013030' => 'csa', 'CsaV3_2G013050' => 'csa', 'CsaV3_2G015620' => 'csa', 'CsaV3_3G012590' => 'csa', 'CsaV3_3G012600' => 'csa', 'CSS0001641' => 'camsi', 'CSS0008310' => 'camsi', 'CSS0013011' => 'camsi', 'CSS0017147' => 'camsi', 'CSS0022970' => 'camsi', 'CSS0025655' => 'camsi', 'CSS0028665' => 'camsi', 'CSS0029117' => 'camsi', 'CSS0032024' => 'camsi', 'CSS0039681' => 'camsi', 'CSS0046516' => 'camsi', 'CSS0050307' => 'camsi', 'DCAR_005871' => 'dca', 'DCAR_007342' => 'dca', 'DCAR_024228' => 'dca', 'DCAR_027277' => 'dca', 'DCAR_030718' => 'dca', 'Dinv20287' => 'din', 'Dinv22461' => 'din', 'Dinv22464' => 'din', 'Dinv29912' => 'din', 'Dinv29913' => 'din', 'Dinv34580' => 'din', 'Dinv34582' => 'din', 'Dinv44632' => 'din', 'Duzib052G0266' => 'dzi', 'Duzib133G0907' => 'dzi', 'Duzib133G1034' => 'dzi', 'Duzib138G0207' => 'dzi', 'Duzib138G0491' => 'dzi', 'Duzib151G0812' => 'dzi', 'Duzib151G1166' => 'dzi', 'Duzib168G0192' => 'dzi', 'Duzib211G0077' => 'dzi', 'Duzib212G0429' => 'dzi', 'Duzib212G0472' => 'dzi', 'ECA233G2617' => 'eca', 'ECA236G4188' => 'eca', 'ECA240G0936' => 'eca', 'ECA240G1129' => 'eca', 'ECA247G0623' => 'eca', 'EL10Ac5g10451' => 'bvu', 'EL10Ac5g10453' => 'bvu', 'EL10Ac5g10894' => 'bvu', 'Eucgr.H00192' => 'egr', 'Eucgr.H00193' => 'egr', 'Eucgr.H00194' => 'egr', 'Eucgr.J01562' => 'egr', 'Eucgr.K03301' => 'egr', 'FAN02G0632' => 'fan', 'FAN05G5378' => 'fan', 'FAN09G3247' => 'fan', 'FAN12G0435' => 'fan', 'FAN12G2426' => 'fan', 'FAN14G1707' => 'fan', 'FAN14G4725' => 'fan', 'FAN15G2071' => 'fan', 'FAN17G3065' => 'fan', 'FAN19G1376' => 'fan', 'FAN20G0354' => 'fan', 'FAN20G2429' => 'fan', 'FAN20G2658' => 'fan', 'FAN24G2343' => 'fan', 'FAN27G2362' => 'fan', 'FAN28G1765' => 'fan', 'FvH4_1g16020' => 'fve', 'FvH4_2g04890' => 'fve', 'FvH4_2g22270' => 'fve', 'FvH4_4g02630' => 'fve', 'FvH4_4g02640' => 'fve', 'FvH4_6g02650' => 'fve', 'Glyma.02G140600' => 'gma', 'Glyma.03G159900' => 'gma', 'Glyma.05G234800' => 'gma', 'Glyma.07G269600' => 'gma', 'Glyma.08G042300' => 'gma', 'Glyma.10G033500' => 'gma', 'Glyma.10G185200' => 'gma', 'Glyma.17G004300' => 'gma', 'Glyma.19G161900' => 'gma', 'Glyma.20G205100' => 'gma', 'Glyma.20G205200' => 'gma', 'Gohir.A01G139101' => 'ghi', 'Gohir.A02G035600' => 'ghi', 'Gohir.A02G117901' => 'ghi', 'Gohir.A07G210100' => 'ghi', 'Gohir.A07G210200' => 'ghi', 'Gohir.A08G061100' => 'ghi', 'Gohir.A09G223000' => 'ghi', 'Gohir.A09G223100' => 'ghi', 'Gohir.A10G113900' => 'ghi', 'Gohir.A10G114000' => 'ghi', 'Gohir.D02G042300' => 'ghi', 'Gohir.D07G216100' => 'ghi', 'Gohir.D07G216200' => 'ghi', 'Gohir.D08G070400' => 'ghi', 'Gohir.D09G225000' => 'ghi', 'Gohir.D09G225100' => 'ghi', 'Gohir.D10G152300' => 'ghi', 'Gohir.D10G153200' => 'ghi', 'Gohir.D11G133701' => 'ghi', 'Gorai.004G074100' => 'gra', 'Gorai.005G046800' => 'gra', 'Gorai.006G246500' => 'gra', 'Gorai.006G246600' => 'gra', 'Gorai.007G142900' => 'gra', 'Gorai.011G171000' => 'gra', 'Gorai.011G171100' => 'gra', 'Gorai.013G104300' => 'gra', 'Gorai.013G104400' => 'gra', 'GSVIVG01000754001' => 'vvi', 'GSVIVG01000756001' => 'vvi', 'GSVIVG01010903001' => 'vvi', 'GSVIVG01017623001' => 'vvi', 'GSVIVG01018113001' => 'vvi', 'GSVIVG01018116001' => 'vvi', 'GSVIVG01018118001' => 'vvi', 'HanXRQChr03g0076211' => 'han', 'HanXRQChr03g0092431' => 'han', 'HanXRQChr03g0092441' => 'han', 'HanXRQChr03g0092591' => 'han', 'HanXRQChr03g0092671' => 'han', 'HanXRQChr03g0092681' => 'han', 'HanXRQChr03g0092691' => 'han', 'HanXRQChr03g0092701' => 'han', 'HanXRQChr03g0092721' => 'han', 'HanXRQChr03g0092731' => 'han', 'HanXRQChr04g0113681' => 'han', 'HanXRQChr10g0281371' => 'han', 'HanXRQChr11g0337141' => 'han', 'HanXRQChr13g0424521' => 'han', 'HanXRQChr13g0424531' => 'han', 'HanXRQChr13g0424541' => 'han', 'HanXRQChr16g0498221' => 'han', 'Haze_04377' => 'cav', 'Haze_11298' => 'cav', 'Haze_24547' => 'cav', 'Haze_24550' => 'cav', 'Haze_26587' => 'cav', 'Hma1.2p1_0650F.1_g195410' => 'hma', 'Hma1.2p1_0893F.1_g233470' => 'hma', 'HPP92_006508' => 'vpl', 'HPP92_024780' => 'vpl', 'Hund02688' => 'sun', 'Hund09380' => 'sun', 'Hund09381' => 'sun', 'Hund09832' => 'sun', 'Hund09833' => 'sun', 'Hund11351' => 'sun', 'Hund11513' => 'sun', 'Lalb_Chr06g0162591' => 'lal', 'Lalb_Chr06g0162601' => 'lal', 'Lalb_Chr06g0169321' => 'lal', 'Lalb_Chr09g0330951' => 'lal', 'Lalb_Chr16g0387631' => 'lal', 'Lalb_Chr21g0306241' => 'lal', 'Lalb_Chr25g0290051' => 'lal', 'Lalb_Chr25g0290061' => 'lal', 'Lalb_Chr25g0290071' => 'lal', 'Lj1g0003876' => 'lja', 'Lj1P1207T36' => 'lonja', 'Lj2C1156G12' => 'lonja', 'Lj3A793G39' => 'lonja', 'Lj3C580G2' => 'lonja', 'Lj3C780G2' => 'lonja', 'Lj3C780T4' => 'lonja', 'Lj3C793G9' => 'lonja', 'Lj4g0012960' => 'lja', 'Lj5g0021252' => 'lja', 'Lj5g0021484' => 'lja', 'Lj5g0024528' => 'lja', 'Lj6A399T12' => 'lonja', 'Lj6A656G65' => 'lonja', 'Lsat_1_v5_gn_3_125500' => 'lsa', 'Lsat_1_v5_gn_3_125540' => 'lsa', 'Lsat_1_v5_gn_5_72701' => 'lsa', 'Lsat_1_v5_gn_8_91560' => 'lsa', 'Lsat_1_v5_gn_9_9640' => 'lsa', 'Manes.01G200600' => 'mes', 'Manes.01G200700' => 'mes', 'Manes.03G168900' => 'mes', 'Manes.03G169000' => 'mes', 'Manes.05G085801' => 'mes', 'Manes.05G086200' => 'mes', 'Manes.15G036700' => 'mes', 'Manes.15G036900' => 'mes', 'Mapoly0004s0172' => 'mpo', 'Mapoly0023s0001' => 'mpo', 'Mapoly0142s0012' => 'mpo', 'MBI01_g32854_MAGBIO' => 'mbi', 'MBI11_g24427_MAGBIO' => 'mbi', 'MBI11_g47319_MAGBIO' => 'mbi', 'MCO01G433' => 'mco', 'MD00G1187800' => 'mdo', 'MD04G1226500' => 'mdo', 'MD05G1203900' => 'mdo', 'MD10G1191100' => 'mdo', 'MD12G1243500' => 'mdo', 'MD13G1207000' => 'mdo', 'MD13G1207100' => 'mdo', 'MD16G1208600' => 'mdo', 'Medtr1g050352' => 'mtr', 'Medtr1g070385' => 'mtr', 'Medtr1g070450' => 'mtr', 'Medtr1g075200' => 'mtr', 'Medtr1g075250' => 'mtr', 'Medtr1g075260' => 'mtr', 'Medtr1g475250' => 'mtr', 'Medtr4g075450' => 'mtr', 'Medtr7g096300' => 'mtr', 'Medtr8g105110' => 'mtr', 'MELO3C006470.2' => 'cme', 'MELO3C006471.2' => 'cme', 'MELO3C020772.2' => 'cme', 'MELO3C026780.2' => 'cme', 'MELO3C026781.2' => 'cme', 'Migut.D00390' => 'egut', 'Migut.G00435' => 'egut', 'Migut.G00436' => 'egut', 'Migut.G00718' => 'egut', 'MSTRG.21891' => 'ama', 'MSTRG.26910' => 'ama', 'MSTRG.4099' => 'ama', 'MSTRG.9925' => 'ama', 'Nitab4.5_0000165g0010' => 'nta', 'Nitab4.5_0000209g0180' => 'nta', 'Nitab4.5_0000244g0440' => 'nta', 'Nitab4.5_0000525g0220' => 'nta', 'Nitab4.5_0001597g0020' => 'nta', 'Nitab4.5_0001878g0040' => 'nta', 'Nitab4.5_0001878g0060' => 'nta', 'Nitab4.5_0002838g0100' => 'nta', 'Nitab4.5_0002838g0120' => 'nta', 'Nitab4.5_0004798g0030' => 'nta', 'Nitab4.5_0005420g0010' => 'nta', 'Nitab4.5_0005507g0010' => 'nta', 'Nitab4.5_0005574g0020' => 'nta', 'Nitab4.5_0005838g0010' => 'nta', 'Nitab4.5_0010580g0020' => 'nta', 'Nn1g02599' => 'nnu', 'Nn1g02608' => 'nnu', 'Nn3g17742' => 'nnu', 'Nn3g19534' => 'nnu', 'Nn3g19535' => 'nnu', 'Oeu008790.1' => 'oeu', 'Oeu008792.1' => 'oeu', 'Oeu032590.1' => 'oeu', 'Oeu035349.1' => 'oeu', 'Oeu049791.1' => 'oeu', 'Os01g0774500' => 'osa', 'Os03g0628800' => 'osa', 'Os03g0798600' => 'osa', 'Os05g0508800' => 'osa', 'Peaxi162Scf00036g02018' => 'pax', 'Peaxi162Scf00578g00032' => 'pax', 'Peaxi162Scf00578g00317' => 'pax', 'Peaxi162Scf00785g00114' => 'pax', 'Peaxi162Scf00813g00119' => 'pax', 'Peaxi162Scf00906g00227' => 'pax', 'PGR004G0875' => 'pgr', 'PGR004G2424' => 'pgr', 'PGR031G1239' => 'pgr', 'PGR031G2474' => 'pgr', 'PGR044G0423' => 'pgr', 'PGSC0003DMG400001128' => 'stu', 'PGSC0003DMG400007336' => 'stu', 'PGSC0003DMG400016318' => 'stu', 'PGSC0003DMG400016319' => 'stu', 'PGSC0003DMG400018074' => 'stu', 'Phvul.001G157700' => 'pvu', 'Phvul.002G148550' => 'pvu', 'Phvul.002G320200' => 'pvu', 'Phvul.003G089200' => 'pvu', 'Phvul.007G126000' => 'pvu', 'Phvul.007G126100' => 'pvu', 'Phvul.007G178000' => 'pvu', 'Phvul.007G178200' => 'pvu', 'Potri.002G043000' => 'ptr', 'Potri.002G043200' => 'ptr', 'Potri.003G123750' => 'ptr', 'Potri.005G055401' => 'ptr', 'Potri.005G219700' => 'ptr', 'Potri.005G220000' => 'ptr', 'Potri.008G161901' => 'ptr', 'Potri.008G162000' => 'ptr', 'Potri.008G162400' => 'ptr', 'Potri.010G076900' => 'ptr', 'Pp3c12_9180' => 'ppa', 'Pp3c13_19770' => 'ppa', 'Pp3c14_22950' => 'ppa', 'Pp3c16_12160' => 'ppa', 'Pp3c27_7820' => 'ppa', 'Pp3c2_3490' => 'ppa', 'Pp3c3_23700' => 'ppa', 'Pp3c3_36520' => 'ppa', 'Pp3c4_15250' => 'ppa', 'PRCOL_00007002' => 'pco', 'Prupe.1G030600' => 'ppe', 'Prupe.1G030700' => 'ppe', 'Prupe.6G345200' => 'ppe', 'Prupe.8G230300' => 'ppe', 'Prupe.8G230500' => 'ppe', 'Psat3g059600' => 'psa', 'Psat5g200920' => 'psa', 'Psat6g056440' => 'psa', 'Psat6g057360' => 'psa', 'Psat6g134120' => 'psa', 'Psat6g134160' => 'psa', 'Psat7g008640' => 'psa', 'Psat7g185240' => 'psa', 'PSO017G1330' => 'pso', 'PSO063G6097' => 'pso', 'PSO170G0835' => 'pso', 'PSO170G2499' => 'pso', 'PSO210G5058' => 'pso', 'PSO210G6154' => 'pso', 'PSO585G0031' => 'pso', 'PSO832G0264' => 'pso', 'PSO832G4288' => 'pso', 'QL03p027355' => 'qlo', 'QL03p027430' => 'qlo', 'QL04p081380' => 'qlo', 'QL06p015642' => 'qlo', 'QL06p015650' => 'qlo', 'QL06p015686' => 'qlo', 'QL12p042927' => 'qlo', 'QL93p1863_0035' => 'qlo', 'RcHm_v2.0_Chr3g0450581' => 'rch', 'RcHm_v2.0_Chr4g0390371' => 'rch', 'RcHm_v2.0_Chr4g0390381' => 'rch', 'RcHm_v2.0_Chr4g0390491' => 'rch', 'RcHm_v2.0_Chr4g0390501' => 'rch', 'RcHm_v2.0_Chr6g0289231' => 'rch', 'Rhsim04G0190400' => 'rsi', 'Rhsim04G0190500' => 'rsi', 'Rhsim04G0190600' => 'rsi', 'Rhsim13G0031400' => 'rsi', 'Rhsim13G0165600' => 'rsi', 'RhsimUnG0114600' => 'rsi', 'RhsimUnG0114700' => 'rsi', 'Sabra02G0034800' => 'sbr', 'Sabra02G0035100' => 'sbr', 'Sabra05G0168600' => 'sbr', 'Sabra05G0168800' => 'sbr', 'Sabra08G0123700' => 'sbr', 'Sabra10G0031900' => 'sbr', 'Sabra13G0039000' => 'sbr', 'SalBow2G0782' => 'sbo', 'SalBow2G1403' => 'sbo', 'SalBow4G0074' => 'sbo', 'SalBow4G2635' => 'sbo', 'SalBow5G3010' => 'sbo', 'Sc05g0000870' => 'sci', 'Sc05g0000890' => 'sci', 'Sc13g0005000' => 'sci', 'Sc13g0005030' => 'sci', 'Sc19g0003790' => 'sci', 'Sc19g0003800' => 'sci', 'Sed0003467' => 'sed', 'Sed0009355' => 'sed', 'Sed0009894' => 'sed', 'Sed0011972' => 'sed', 'Sed0021483' => 'sed', 'Sed0021750' => 'sed', 'Sed0026279' => 'sed', 'SEGI_05312' => 'sgi', 'SEGI_10112' => 'sgi', 'SEGI_15835' => 'sgi', 'SEGI_30386' => 'sgi', 'SEGI_34122' => 'sgi', 'SEGI_35063' => 'sgi', 'SGA_v2.0_scaffold101G29794' => 'sas', 'SGA_v2.0_scaffold1G00573' => 'sas', 'SGA_v2.0_scaffold79G25637' => 'sas', 'SGA_v2.0_scaffold88G27283' => 'sas', 'SGA_v2.0_scaffold88G27285' => 'sas', 'SGA_v2.0_scaffold88G27331' => 'sas', 'SHI09937' => 'shi', 'SMO119G0302' => 'smo', 'SMO137G0231' => 'smo', 'SMO367G1151' => 'smo', 'Solyc02g082000.3' => 'sly', 'Solyc06g031670.3' => 'sly', 'Solyc06g053810.3' => 'sly', 'Solyc07g025457.1' => 'sly', 'Solyc08g059740.1' => 'sly', 'Solyc08g059750.3' => 'sly', 'Solyc09g083370.3' => 'sly', 'Solyc12g038950.3' => 'sly', 'Sopen02g026630' => 'spe', 'Sopen06g018930' => 'spe', 'Sopen06g018940' => 'spe', 'Sopen08g009460' => 'spe', 'Sopen09g032290' => 'spe', 'Sp1g03080' => 'spa', 'Sp1g03090' => 'spa', 'Sp1g05480' => 'spa', 'Sp2g07860' => 'spa', 'Sp2g08430' => 'spa', 'Sp2g08440' => 'spa', 'Sp2g26200' => 'spa', 'Sp4g13170' => 'spa', 'Sp6g33840' => 'spa', 'SpUn1204_0010' => 'spa', 'TAR365G0908' => 'tar', 'TAR381G1270' => 'tar', 'TAR381G1651' => 'tar', 'TAR625G1131' => 'tar', 'TAR633G0962' => 'tar', 'TAR633G1729' => 'tar', 'TAR633G1864' => 'tar', 'TAR636G0221' => 'tar', 'TAR636G0314' => 'tar', 'TAR636G3202' => 'tar', 'THA.LOC104800805' => 'tha', 'THA.LOC104801096' => 'tha', 'THA.LOC104801555' => 'tha', 'THA.LOC104808491' => 'tha', 'THA.LOC104808595' => 'tha', 'THA.LOC104815985' => 'tha', 'THA.LOC104822250' => 'tha', 'THA.LOC104826071' => 'tha', 'Thecc.01G265200' => 'tca', 'Thecc.01G265300' => 'tca', 'Thecc.01G265700' => 'tca', 'Thecc.03G109100' => 'tca', 'Thecc.04G245900' => 'tca', 'Thecc.04G246000' => 'tca', 'Thhalv10003334m.g' => 'esa', 'Thhalv10005508m.g' => 'esa', 'Thhalv10005643m.g' => 'esa', 'Thhalv10007316m.g' => 'esa', 'Thhalv10009006m.g' => 'esa', 'Thhalv10009309m.g' => 'esa', 'Thhalv10014917m.g' => 'esa', 'Thhalv10014919m.g' => 'esa', 'Thhalv10015393m.g' => 'esa', 'Thhalv10016515m.g' => 'esa', 'Thhalv10029242m.g' => 'esa', 'TPR.G16654' => 'tpr', 'TPR.G20589' => 'tpr', 'TPR.G23029' => 'tpr', 'TPR.G27731' => 'tpr', 'TPR.G28889' => 'tpr', 'TPR.G28899' => 'tpr', 'TPR.G30846' => 'tpr', 'TPR.G5452' => 'tpr', 'TPR.G5713' => 'tpr', 'TPR.G9046' => 'tpr', 'TPR.G9061' => 'tpr', 'TWI09G1075' => 'twi', 'TWI12G0806' => 'twi', 'TWI18G0108' => 'twi', 'TWI53G1361' => 'twi', 'TWI73G0185' => 'twi', 'TWI73G0427' => 'twi', 'unitig_37.g12001' => 'ugi', 'unitig_747.g21660' => 'ugi', 'unitig_748.g7232' => 'ugi', 'unitig_748.g7315' => 'ugi', 'unitig_85.g27262' => 'ugi', 'unitig_92.g28220' => 'ugi', 'vmacro02632' => 'vma', 'vmacro08410' => 'vma', 'vmacro08411' => 'vma', 'vmacro15407' => 'vma', 'VMungo0251G3619' => 'vmu', 'VMungo0720G1204' => 'vmu', 'VMungo0720G1918' => 'vmu', 'VMungo0720G2387' => 'vmu', 'VMungo0720G2961' => 'vmu', 'VMungo1215G2154' => 'vmu', 'VMungo1383G2411' => 'vmu', 'Zm00001eb051130' => 'zma', 'Zm00001eb116830' => 'zma', 'Zm00001eb116850' => 'zma', 'Zm00001eb151740' => 'zma', 'Zm00001eb292360' => 'zma', 'Zm00001eb301640' => 'zma' ) $gf_id = 'HOM05D000856' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000856' ) $data_identifier = 'HOM05D000856' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 13, 'ath' => (int) 10, 'atr' => (int) 1, 'acertr' => (int) 8, 'cqu' => (int) 6, 'bca' => (int) 21, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 11, 'car' => (int) 9, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 8, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 5, 'fan' => (int) 16, 'fve' => (int) 6, 'gma' => (int) 11, 'ghi' => (int) 19, 'gra' => (int) 9, 'vvi' => (int) 7, 'han' => (int) 17, 'cav' => (int) 5, 'hma' => (int) 2, 'vpl' => (int) 2, 'sun' => (int) 7, 'lal' => (int) 9, 'lja' => (int) 5, 'lonja' => (int) 9, 'lsa' => (int) 5, 'mes' => (int) 8, 'mpo' => (int) 3, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 10, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 15, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 9, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 9, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 6, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 5, 'spa' => (int) 10, 'tar' => (int) 10, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 11, 'tpr' => (int) 11, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 4, 'vmu' => (int) 7, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb301640' $species_info = array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ) $local_species = 'bol' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000856', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p00010' => 'bna', 'A03p04160' => 'bna', 'A03p17160' => 'bna', 'A04p23370' => 'bna', 'A05p14860' => 'bna', 'A08p37020' => 'bna', 'A09p08050' => 'bna', 'A09p66800' => 'bna', 'A09p67940' => 'bna', 'A10p02680' => 'bna', 'A10p05320' => 'bna', 'Aa31LG1G20560' => 'aar', 'Aa31LG1G20610' => 'aar', 'Aa31LG1G7810' => 'aar', 'Aa31LG5G3590' => 'aar', 'Aa31LG5G6140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3819' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4683' => 'aag', 'Actinidia04480' => 'ach', 'Actinidia05466' => 'ach', 'Actinidia08445' => 'ach', 'Actinidia21170' => 'ach', 'Actinidia24812' => 'ach', 'Actinidia24951' => 'ach', 'Actinidia40088' => 'ach', 'Ah.02g111660' => 'amhyb', 'Ah.11g048900' => 'amhyb', 'Ah.11g049910' => 'amhyb', 'AL1G13870' => 'aly', 'AL1G13880' => 'aly', 'AL1G16760' => 'aly', 'AL390U10020' => 'aly', 'AL4G25520' => 'aly', 'AL6G19890' => 'aly', 'AL6G19900' => 'aly', 'AL6G19910' => 'aly', 'AL8G40100' => 'aly', 'Aqoxy2G03562' => 'aox', 'Aqoxy5G00316' => 'aox', 'Aqoxy5G00926' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1628KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1H403S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2FU6SJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.882I6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8YRY2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YN1SN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AF70II' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZA8L1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F916KL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHRD8H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KTZ8QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S22EMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8M29T' => 'arhy', 'AT1G04270' => 'ath', 'AT1G04280' => 'ath', 'AT1G06750' => 'ath', 'AT1G33850' => 'ath', 'AT2G30630' => 'ath', 'AT5G09490' => 'ath', 'AT5G09500' => 'ath', 'AT5G09510' => 'ath', 'AT5G43640' => 'ath', 'AT5G63070' => 'ath', 'ATR0605G315' => 'atr', 'Atru.chr11.175' => 'acertr', 'Atru.chr11.653' => 'acertr', 'Atru.chr3.1616' => 'acertr', 'Atru.chr4.2230' => 'acertr', 'Atru.chr4.2232' => 'acertr', 'Atru.chr5.1598' => 'acertr', 'Atru.chr5.1600' => 'acertr', 'Atru.chr5.2188' => 'acertr', 'AUR62008326' => 'cqu', 'AUR62011922' => 'cqu', 'AUR62011924' => 'cqu', 'AUR62021771' => 'cqu', 'AUR62032237' => 'cqu', 'AUR62032240' => 'cqu', 'BcaB01g05572' => 'bca', 'BcaB02g10337' => 'bca', 'BcaB04g19944' => 'bca', 'BcaB05g21548' => 'bca', 'BcaB05g21549' => 'bca', 'BcaB05g23227' => 'bca', 'BcaB06g26256' => 'bca', 'BcaB06g26257' => 'bca', 'BcaB06g28379' => 'bca', 'BcaC02g11159' => 'bca', 'BcaC03g13258' => 'bca', 'BcaC03g13259' => 'bca', 'BcaC05g24456' => 'bca', 'BcaC05g24457' => 'bca', 'BcaC07g36922' => 'bca', 'BcaC07g36923' => 'bca', 'BcaC07g42050' => 'bca', 'BcaC07g42176' => 'bca', 'BcaC07g42195' => 'bca', 'BcaC07g42196' => 'bca', 'BcaNung06674' => 'bca', 'BolC2t06351H' => 'bol', 'BolC2t06352H' => 'bol', 'BolC3t12993H' => 'bol', 'BolC4t23525H' => 'bol', 'BolC4t27475H' => 'bol', 'BolC5t29025H' => 'bol', 'BolC5t29026H' => 'bol', 'BolC8t46898H' => 'bol', 'BolC8t46899H' => 'bol', 'BolC8t52630H' => 'bol', 'BolC8t52765H' => 'bol', 'BolC9t53824H' => 'bol', 'BraA03t09760Z' => 'bra', 'BraA03t10990Z' => 'bra', 'BraA05t20413Z' => 'bra', 'BraA08t35602Z' => 'bra', 'BraA09t36458Z' => 'bra', 'BraA09t42018Z' => 'bra', 'BraA09t42129Z' => 'bra', 'BraA10t42536Z' => 'bra', 'BraA10t42537Z' => 'bra', 'C01p10690' => 'bna', 'C02p03890' => 'bna', 'C02p03900' => 'bna', 'C03p04620' => 'bna', 'C04p19870' => 'bna', 'C04p59670' => 'bna', 'C05p02460' => 'bna', 'C05p02470' => 'bna', 'C08p00980' => 'bna', 'C08p00990' => 'bna', 'C08p51030' => 'bna', 'C08p52360' => 'bna', 'C09p09120' => 'bna', 'CAN.G19.15' => 'can', 'CAN.G251.10' => 'can', 'CAN.G251.9' => 'can', 'CAN.G398.24' => 'can', 'CAN.G410.32' => 'can', 'CAN.G881.2' => 'can', 'CANSAT01G3025' => 'cansat', 'CANSAT78G1211' => 'cansat', 'CANSAT78G1218' => 'cansat', 'CANSAT78G1521' => 'cansat', 'CANSAT78G1670' => 'cansat', 'CARHR003600' => 'chi', 'CARHR003610' => 'chi', 'CARHR006290' => 'chi', 'CARHR006430' => 'chi', 'CARHR124110' => 'chi', 'CARHR203870' => 'chi', 'CARHR203880' => 'chi', 'CARHR203890' => 'chi', 'CARHR276880' => 'chi', 'Carub.0001s0346' => 'cru', 'Carub.0001s0347' => 'cru', 'Carub.0001s0607' => 'cru', 'Carub.0003s2768' => 'cru', 'Carub.0003s2769' => 'cru', 'Carub.0004s1178' => 'cru', 'Carub.0006s0806' => 'cru', 'Carub.0006s0807' => 'cru', 'Carub.0006s0808' => 'cru', 'Carub.0008s0501' => 'cru', 'Carub.0008s2379' => 'cru', 'Ca_08655_v3' => 'car', 'Ca_08922_v3' => 'car', 'Ca_08923_v3' => 'car', 'Ca_09119_v3' => 'car', 'Ca_09703_v3' => 'car', 'Ca_09705_v3' => 'car', 'Ca_09835_v3' => 'car', 'Ca_26403_v3' => 'car', 'Ca_30719_v3' => 'car', 'CBR_g17958' => 'cbr', 'CBR_g40516' => 'cbr', 'Cc00_g05350' => 'ccan', 'Cc01_g18690' => 'ccan', 'Cc03_g04830' => 'ccan', 'Cc03_g04850' => 'ccan', 'CDE02G4469' => 'cde', 'CDE06G0883' => 'cde', 'CDE06G1295' => 'cde', 'CDE06G1390' => 'cde', 'CDE07G0584' => 'cde', 'CDE07G1084' => 'cde', 'CDE08G1259' => 'cde', 'Cfa002341' => 'cfa', 'Cfa024337' => 'cfa', 'Ciclev10004749m.g' => 'ccl', 'Ciclev10006127m.g' => 'ccl', 'Ciclev10019720m.g' => 'ccl', 'Ciclev10022652m.g' => 'ccl', 'CiPaw.01G190400' => 'cil', 'CiPaw.01G190500' => 'cil', 'CiPaw.02G116400' => 'cil', 'CiPaw.02G116500' => 'cil', 'CiPaw.04G183000' => 'cil', 'CiPaw.04G183300' => 'cil', 'ClCG05G004610' => 'cla', 'ClCG05G004620' => 'cla', 'ClCG06G006730' => 'cla', 'ClCG06G006740' => 'cla', 'ClCG11G003690' => 'cla', 'COL.COLO4_08276' => 'col', 'COL.COLO4_08277' => 'col', 'COL.COLO4_15787' => 'col', 'COL.COLO4_15789' => 'col', 'Cpa.g.c44815' => 'cpa', 'Cpa.g.sc52.144' => 'cpa', 'Cpa.g.sc58.46' => 'cpa', 'Cpa.g.sc58.47' => 'cpa', 'Cre08.g360900' => 'cre', 'CsaV3_2G013030' => 'csa', 'CsaV3_2G013050' => 'csa', 'CsaV3_2G015620' => 'csa', 'CsaV3_3G012590' => 'csa', 'CsaV3_3G012600' => 'csa', 'CSS0001641' => 'camsi', 'CSS0008310' => 'camsi', 'CSS0013011' => 'camsi', 'CSS0017147' => 'camsi', 'CSS0022970' => 'camsi', 'CSS0025655' => 'camsi', 'CSS0028665' => 'camsi', 'CSS0029117' => 'camsi', 'CSS0032024' => 'camsi', 'CSS0039681' => 'camsi', 'CSS0046516' => 'camsi', 'CSS0050307' => 'camsi', 'DCAR_005871' => 'dca', 'DCAR_007342' => 'dca', 'DCAR_024228' => 'dca', 'DCAR_027277' => 'dca', 'DCAR_030718' => 'dca', 'Dinv20287' => 'din', 'Dinv22461' => 'din', 'Dinv22464' => 'din', 'Dinv29912' => 'din', 'Dinv29913' => 'din', 'Dinv34580' => 'din', 'Dinv34582' => 'din', 'Dinv44632' => 'din', 'Duzib052G0266' => 'dzi', 'Duzib133G0907' => 'dzi', 'Duzib133G1034' => 'dzi', 'Duzib138G0207' => 'dzi', 'Duzib138G0491' => 'dzi', 'Duzib151G0812' => 'dzi', 'Duzib151G1166' => 'dzi', 'Duzib168G0192' => 'dzi', 'Duzib211G0077' => 'dzi', 'Duzib212G0429' => 'dzi', 'Duzib212G0472' => 'dzi', 'ECA233G2617' => 'eca', 'ECA236G4188' => 'eca', 'ECA240G0936' => 'eca', 'ECA240G1129' => 'eca', 'ECA247G0623' => 'eca', 'EL10Ac5g10451' => 'bvu', 'EL10Ac5g10453' => 'bvu', 'EL10Ac5g10894' => 'bvu', 'Eucgr.H00192' => 'egr', 'Eucgr.H00193' => 'egr', 'Eucgr.H00194' => 'egr', 'Eucgr.J01562' => 'egr', 'Eucgr.K03301' => 'egr', 'FAN02G0632' => 'fan', 'FAN05G5378' => 'fan', 'FAN09G3247' => 'fan', 'FAN12G0435' => 'fan', 'FAN12G2426' => 'fan', 'FAN14G1707' => 'fan', 'FAN14G4725' => 'fan', 'FAN15G2071' => 'fan', 'FAN17G3065' => 'fan', 'FAN19G1376' => 'fan', 'FAN20G0354' => 'fan', 'FAN20G2429' => 'fan', 'FAN20G2658' => 'fan', 'FAN24G2343' => 'fan', 'FAN27G2362' => 'fan', 'FAN28G1765' => 'fan', 'FvH4_1g16020' => 'fve', 'FvH4_2g04890' => 'fve', 'FvH4_2g22270' => 'fve', 'FvH4_4g02630' => 'fve', 'FvH4_4g02640' => 'fve', 'FvH4_6g02650' => 'fve', 'Glyma.02G140600' => 'gma', 'Glyma.03G159900' => 'gma', 'Glyma.05G234800' => 'gma', 'Glyma.07G269600' => 'gma', 'Glyma.08G042300' => 'gma', 'Glyma.10G033500' => 'gma', 'Glyma.10G185200' => 'gma', 'Glyma.17G004300' => 'gma', 'Glyma.19G161900' => 'gma', 'Glyma.20G205100' => 'gma', 'Glyma.20G205200' => 'gma', 'Gohir.A01G139101' => 'ghi', 'Gohir.A02G035600' => 'ghi', 'Gohir.A02G117901' => 'ghi', 'Gohir.A07G210100' => 'ghi', 'Gohir.A07G210200' => 'ghi', 'Gohir.A08G061100' => 'ghi', 'Gohir.A09G223000' => 'ghi', 'Gohir.A09G223100' => 'ghi', 'Gohir.A10G113900' => 'ghi', 'Gohir.A10G114000' => 'ghi', 'Gohir.D02G042300' => 'ghi', 'Gohir.D07G216100' => 'ghi', 'Gohir.D07G216200' => 'ghi', 'Gohir.D08G070400' => 'ghi', 'Gohir.D09G225000' => 'ghi', 'Gohir.D09G225100' => 'ghi', 'Gohir.D10G152300' => 'ghi', 'Gohir.D10G153200' => 'ghi', 'Gohir.D11G133701' => 'ghi', 'Gorai.004G074100' => 'gra', 'Gorai.005G046800' => 'gra', 'Gorai.006G246500' => 'gra', 'Gorai.006G246600' => 'gra', 'Gorai.007G142900' => 'gra', 'Gorai.011G171000' => 'gra', 'Gorai.011G171100' => 'gra', 'Gorai.013G104300' => 'gra', 'Gorai.013G104400' => 'gra', 'GSVIVG01000754001' => 'vvi', 'GSVIVG01000756001' => 'vvi', 'GSVIVG01010903001' => 'vvi', 'GSVIVG01017623001' => 'vvi', 'GSVIVG01018113001' => 'vvi', 'GSVIVG01018116001' => 'vvi', 'GSVIVG01018118001' => 'vvi', 'HanXRQChr03g0076211' => 'han', 'HanXRQChr03g0092431' => 'han', 'HanXRQChr03g0092441' => 'han', 'HanXRQChr03g0092591' => 'han', 'HanXRQChr03g0092671' => 'han', 'HanXRQChr03g0092681' => 'han', 'HanXRQChr03g0092691' => 'han', 'HanXRQChr03g0092701' => 'han', 'HanXRQChr03g0092721' => 'han', 'HanXRQChr03g0092731' => 'han', 'HanXRQChr04g0113681' => 'han', 'HanXRQChr10g0281371' => 'han', 'HanXRQChr11g0337141' => 'han', 'HanXRQChr13g0424521' => 'han', 'HanXRQChr13g0424531' => 'han', 'HanXRQChr13g0424541' => 'han', 'HanXRQChr16g0498221' => 'han', 'Haze_04377' => 'cav', 'Haze_11298' => 'cav', 'Haze_24547' => 'cav', 'Haze_24550' => 'cav', 'Haze_26587' => 'cav', 'Hma1.2p1_0650F.1_g195410' => 'hma', 'Hma1.2p1_0893F.1_g233470' => 'hma', 'HPP92_006508' => 'vpl', 'HPP92_024780' => 'vpl', 'Hund02688' => 'sun', 'Hund09380' => 'sun', 'Hund09381' => 'sun', 'Hund09832' => 'sun', 'Hund09833' => 'sun', 'Hund11351' => 'sun', 'Hund11513' => 'sun', 'Lalb_Chr06g0162591' => 'lal', 'Lalb_Chr06g0162601' => 'lal', 'Lalb_Chr06g0169321' => 'lal', 'Lalb_Chr09g0330951' => 'lal', 'Lalb_Chr16g0387631' => 'lal', 'Lalb_Chr21g0306241' => 'lal', 'Lalb_Chr25g0290051' => 'lal', 'Lalb_Chr25g0290061' => 'lal', 'Lalb_Chr25g0290071' => 'lal', 'Lj1g0003876' => 'lja', 'Lj1P1207T36' => 'lonja', 'Lj2C1156G12' => 'lonja', 'Lj3A793G39' => 'lonja', 'Lj3C580G2' => 'lonja', 'Lj3C780G2' => 'lonja', 'Lj3C780T4' => 'lonja', 'Lj3C793G9' => 'lonja', 'Lj4g0012960' => 'lja', 'Lj5g0021252' => 'lja', 'Lj5g0021484' => 'lja', 'Lj5g0024528' => 'lja', 'Lj6A399T12' => 'lonja', 'Lj6A656G65' => 'lonja', 'Lsat_1_v5_gn_3_125500' => 'lsa', 'Lsat_1_v5_gn_3_125540' => 'lsa', 'Lsat_1_v5_gn_5_72701' => 'lsa', 'Lsat_1_v5_gn_8_91560' => 'lsa', 'Lsat_1_v5_gn_9_9640' => 'lsa', 'Manes.01G200600' => 'mes', 'Manes.01G200700' => 'mes', 'Manes.03G168900' => 'mes', 'Manes.03G169000' => 'mes', 'Manes.05G085801' => 'mes', 'Manes.05G086200' => 'mes', 'Manes.15G036700' => 'mes', 'Manes.15G036900' => 'mes', 'Mapoly0004s0172' => 'mpo', 'Mapoly0023s0001' => 'mpo', 'Mapoly0142s0012' => 'mpo', 'MBI01_g32854_MAGBIO' => 'mbi', 'MBI11_g24427_MAGBIO' => 'mbi', 'MBI11_g47319_MAGBIO' => 'mbi', 'MCO01G433' => 'mco', 'MD00G1187800' => 'mdo', 'MD04G1226500' => 'mdo', 'MD05G1203900' => 'mdo', 'MD10G1191100' => 'mdo', 'MD12G1243500' => 'mdo', 'MD13G1207000' => 'mdo', 'MD13G1207100' => 'mdo', 'MD16G1208600' => 'mdo', 'Medtr1g050352' => 'mtr', 'Medtr1g070385' => 'mtr', 'Medtr1g070450' => 'mtr', 'Medtr1g075200' => 'mtr', 'Medtr1g075250' => 'mtr', 'Medtr1g075260' => 'mtr', 'Medtr1g475250' => 'mtr', 'Medtr4g075450' => 'mtr', 'Medtr7g096300' => 'mtr', 'Medtr8g105110' => 'mtr', 'MELO3C006470.2' => 'cme', 'MELO3C006471.2' => 'cme', 'MELO3C020772.2' => 'cme', 'MELO3C026780.2' => 'cme', 'MELO3C026781.2' => 'cme', 'Migut.D00390' => 'egut', 'Migut.G00435' => 'egut', 'Migut.G00436' => 'egut', 'Migut.G00718' => 'egut', 'MSTRG.21891' => 'ama', 'MSTRG.26910' => 'ama', 'MSTRG.4099' => 'ama', 'MSTRG.9925' => 'ama', 'Nitab4.5_0000165g0010' => 'nta', 'Nitab4.5_0000209g0180' => 'nta', 'Nitab4.5_0000244g0440' => 'nta', 'Nitab4.5_0000525g0220' => 'nta', 'Nitab4.5_0001597g0020' => 'nta', 'Nitab4.5_0001878g0040' => 'nta', 'Nitab4.5_0001878g0060' => 'nta', 'Nitab4.5_0002838g0100' => 'nta', 'Nitab4.5_0002838g0120' => 'nta', 'Nitab4.5_0004798g0030' => 'nta', 'Nitab4.5_0005420g0010' => 'nta', 'Nitab4.5_0005507g0010' => 'nta', 'Nitab4.5_0005574g0020' => 'nta', 'Nitab4.5_0005838g0010' => 'nta', 'Nitab4.5_0010580g0020' => 'nta', 'Nn1g02599' => 'nnu', 'Nn1g02608' => 'nnu', 'Nn3g17742' => 'nnu', 'Nn3g19534' => 'nnu', 'Nn3g19535' => 'nnu', 'Oeu008790.1' => 'oeu', 'Oeu008792.1' => 'oeu', 'Oeu032590.1' => 'oeu', 'Oeu035349.1' => 'oeu', 'Oeu049791.1' => 'oeu', 'Os01g0774500' => 'osa', 'Os03g0628800' => 'osa', 'Os03g0798600' => 'osa', 'Os05g0508800' => 'osa', 'Peaxi162Scf00036g02018' => 'pax', 'Peaxi162Scf00578g00032' => 'pax', 'Peaxi162Scf00578g00317' => 'pax', 'Peaxi162Scf00785g00114' => 'pax', 'Peaxi162Scf00813g00119' => 'pax', 'Peaxi162Scf00906g00227' => 'pax', 'PGR004G0875' => 'pgr', 'PGR004G2424' => 'pgr', 'PGR031G1239' => 'pgr', 'PGR031G2474' => 'pgr', 'PGR044G0423' => 'pgr', 'PGSC0003DMG400001128' => 'stu', 'PGSC0003DMG400007336' => 'stu', 'PGSC0003DMG400016318' => 'stu', 'PGSC0003DMG400016319' => 'stu', 'PGSC0003DMG400018074' => 'stu', 'Phvul.001G157700' => 'pvu', 'Phvul.002G148550' => 'pvu', 'Phvul.002G320200' => 'pvu', 'Phvul.003G089200' => 'pvu', 'Phvul.007G126000' => 'pvu', 'Phvul.007G126100' => 'pvu', 'Phvul.007G178000' => 'pvu', 'Phvul.007G178200' => 'pvu', 'Potri.002G043000' => 'ptr', 'Potri.002G043200' => 'ptr', 'Potri.003G123750' => 'ptr', 'Potri.005G055401' => 'ptr', 'Potri.005G219700' => 'ptr', 'Potri.005G220000' => 'ptr', 'Potri.008G161901' => 'ptr', 'Potri.008G162000' => 'ptr', 'Potri.008G162400' => 'ptr', 'Potri.010G076900' => 'ptr', 'Pp3c12_9180' => 'ppa', 'Pp3c13_19770' => 'ppa', 'Pp3c14_22950' => 'ppa', 'Pp3c16_12160' => 'ppa', 'Pp3c27_7820' => 'ppa', 'Pp3c2_3490' => 'ppa', 'Pp3c3_23700' => 'ppa', 'Pp3c3_36520' => 'ppa', 'Pp3c4_15250' => 'ppa', 'PRCOL_00007002' => 'pco', 'Prupe.1G030600' => 'ppe', 'Prupe.1G030700' => 'ppe', 'Prupe.6G345200' => 'ppe', 'Prupe.8G230300' => 'ppe', 'Prupe.8G230500' => 'ppe', 'Psat3g059600' => 'psa', 'Psat5g200920' => 'psa', 'Psat6g056440' => 'psa', 'Psat6g057360' => 'psa', 'Psat6g134120' => 'psa', 'Psat6g134160' => 'psa', 'Psat7g008640' => 'psa', 'Psat7g185240' => 'psa', 'PSO017G1330' => 'pso', 'PSO063G6097' => 'pso', 'PSO170G0835' => 'pso', 'PSO170G2499' => 'pso', 'PSO210G5058' => 'pso', 'PSO210G6154' => 'pso', 'PSO585G0031' => 'pso', 'PSO832G0264' => 'pso', 'PSO832G4288' => 'pso', 'QL03p027355' => 'qlo', 'QL03p027430' => 'qlo', 'QL04p081380' => 'qlo', 'QL06p015642' => 'qlo', 'QL06p015650' => 'qlo', 'QL06p015686' => 'qlo', 'QL12p042927' => 'qlo', 'QL93p1863_0035' => 'qlo', 'RcHm_v2.0_Chr3g0450581' => 'rch', 'RcHm_v2.0_Chr4g0390371' => 'rch', 'RcHm_v2.0_Chr4g0390381' => 'rch', 'RcHm_v2.0_Chr4g0390491' => 'rch', 'RcHm_v2.0_Chr4g0390501' => 'rch', 'RcHm_v2.0_Chr6g0289231' => 'rch', 'Rhsim04G0190400' => 'rsi', 'Rhsim04G0190500' => 'rsi', 'Rhsim04G0190600' => 'rsi', 'Rhsim13G0031400' => 'rsi', 'Rhsim13G0165600' => 'rsi', 'RhsimUnG0114600' => 'rsi', 'RhsimUnG0114700' => 'rsi', 'Sabra02G0034800' => 'sbr', 'Sabra02G0035100' => 'sbr', 'Sabra05G0168600' => 'sbr', 'Sabra05G0168800' => 'sbr', 'Sabra08G0123700' => 'sbr', 'Sabra10G0031900' => 'sbr', 'Sabra13G0039000' => 'sbr', 'SalBow2G0782' => 'sbo', 'SalBow2G1403' => 'sbo', 'SalBow4G0074' => 'sbo', 'SalBow4G2635' => 'sbo', 'SalBow5G3010' => 'sbo', 'Sc05g0000870' => 'sci', 'Sc05g0000890' => 'sci', 'Sc13g0005000' => 'sci', 'Sc13g0005030' => 'sci', 'Sc19g0003790' => 'sci', 'Sc19g0003800' => 'sci', 'Sed0003467' => 'sed', 'Sed0009355' => 'sed', 'Sed0009894' => 'sed', 'Sed0011972' => 'sed', 'Sed0021483' => 'sed', 'Sed0021750' => 'sed', 'Sed0026279' => 'sed', 'SEGI_05312' => 'sgi', 'SEGI_10112' => 'sgi', 'SEGI_15835' => 'sgi', 'SEGI_30386' => 'sgi', 'SEGI_34122' => 'sgi', 'SEGI_35063' => 'sgi', 'SGA_v2.0_scaffold101G29794' => 'sas', 'SGA_v2.0_scaffold1G00573' => 'sas', 'SGA_v2.0_scaffold79G25637' => 'sas', 'SGA_v2.0_scaffold88G27283' => 'sas', 'SGA_v2.0_scaffold88G27285' => 'sas', 'SGA_v2.0_scaffold88G27331' => 'sas', 'SHI09937' => 'shi', 'SMO119G0302' => 'smo', 'SMO137G0231' => 'smo', 'SMO367G1151' => 'smo', 'Solyc02g082000.3' => 'sly', 'Solyc06g031670.3' => 'sly', 'Solyc06g053810.3' => 'sly', 'Solyc07g025457.1' => 'sly', 'Solyc08g059740.1' => 'sly', 'Solyc08g059750.3' => 'sly', 'Solyc09g083370.3' => 'sly', 'Solyc12g038950.3' => 'sly', 'Sopen02g026630' => 'spe', 'Sopen06g018930' => 'spe', 'Sopen06g018940' => 'spe', 'Sopen08g009460' => 'spe', 'Sopen09g032290' => 'spe', 'Sp1g03080' => 'spa', 'Sp1g03090' => 'spa', 'Sp1g05480' => 'spa', 'Sp2g07860' => 'spa', 'Sp2g08430' => 'spa', 'Sp2g08440' => 'spa', 'Sp2g26200' => 'spa', 'Sp4g13170' => 'spa', 'Sp6g33840' => 'spa', 'SpUn1204_0010' => 'spa', 'TAR365G0908' => 'tar', 'TAR381G1270' => 'tar', 'TAR381G1651' => 'tar', 'TAR625G1131' => 'tar', 'TAR633G0962' => 'tar', 'TAR633G1729' => 'tar', 'TAR633G1864' => 'tar', 'TAR636G0221' => 'tar', 'TAR636G0314' => 'tar', 'TAR636G3202' => 'tar', 'THA.LOC104800805' => 'tha', 'THA.LOC104801096' => 'tha', 'THA.LOC104801555' => 'tha', 'THA.LOC104808491' => 'tha', 'THA.LOC104808595' => 'tha', 'THA.LOC104815985' => 'tha', 'THA.LOC104822250' => 'tha', 'THA.LOC104826071' => 'tha', 'Thecc.01G265200' => 'tca', 'Thecc.01G265300' => 'tca', 'Thecc.01G265700' => 'tca', 'Thecc.03G109100' => 'tca', 'Thecc.04G245900' => 'tca', 'Thecc.04G246000' => 'tca', 'Thhalv10003334m.g' => 'esa', 'Thhalv10005508m.g' => 'esa', 'Thhalv10005643m.g' => 'esa', 'Thhalv10007316m.g' => 'esa', 'Thhalv10009006m.g' => 'esa', 'Thhalv10009309m.g' => 'esa', 'Thhalv10014917m.g' => 'esa', 'Thhalv10014919m.g' => 'esa', 'Thhalv10015393m.g' => 'esa', 'Thhalv10016515m.g' => 'esa', 'Thhalv10029242m.g' => 'esa', 'TPR.G16654' => 'tpr', 'TPR.G20589' => 'tpr', 'TPR.G23029' => 'tpr', 'TPR.G27731' => 'tpr', 'TPR.G28889' => 'tpr', 'TPR.G28899' => 'tpr', 'TPR.G30846' => 'tpr', 'TPR.G5452' => 'tpr', 'TPR.G5713' => 'tpr', 'TPR.G9046' => 'tpr', 'TPR.G9061' => 'tpr', 'TWI09G1075' => 'twi', 'TWI12G0806' => 'twi', 'TWI18G0108' => 'twi', 'TWI53G1361' => 'twi', 'TWI73G0185' => 'twi', 'TWI73G0427' => 'twi', 'unitig_37.g12001' => 'ugi', 'unitig_747.g21660' => 'ugi', 'unitig_748.g7232' => 'ugi', 'unitig_748.g7315' => 'ugi', 'unitig_85.g27262' => 'ugi', 'unitig_92.g28220' => 'ugi', 'vmacro02632' => 'vma', 'vmacro08410' => 'vma', 'vmacro08411' => 'vma', 'vmacro15407' => 'vma', 'VMungo0251G3619' => 'vmu', 'VMungo0720G1204' => 'vmu', 'VMungo0720G1918' => 'vmu', 'VMungo0720G2387' => 'vmu', 'VMungo0720G2961' => 'vmu', 'VMungo1215G2154' => 'vmu', 'VMungo1383G2411' => 'vmu', 'Zm00001eb051130' => 'zma', 'Zm00001eb116830' => 'zma', 'Zm00001eb116850' => 'zma', 'Zm00001eb151740' => 'zma', 'Zm00001eb292360' => 'zma', 'Zm00001eb301640' => 'zma' ), 'gf_id' => 'HOM05D000856', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000856' ), 'data_identifier' => 'HOM05D000856', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000856', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p00010' => 'bna', 'A03p04160' => 'bna', 'A03p17160' => 'bna', 'A04p23370' => 'bna', 'A05p14860' => 'bna', 'A08p37020' => 'bna', 'A09p08050' => 'bna', 'A09p66800' => 'bna', 'A09p67940' => 'bna', 'A10p02680' => 'bna', 'A10p05320' => 'bna', 'Aa31LG1G20560' => 'aar', 'Aa31LG1G20610' => 'aar', 'Aa31LG1G7810' => 'aar', 'Aa31LG5G3590' => 'aar', 'Aa31LG5G6140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3819' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4683' => 'aag', 'Actinidia04480' => 'ach', 'Actinidia05466' => 'ach', 'Actinidia08445' => 'ach', 'Actinidia21170' => 'ach', 'Actinidia24812' => 'ach', 'Actinidia24951' => 'ach', 'Actinidia40088' => 'ach', 'Ah.02g111660' => 'amhyb', 'Ah.11g048900' => 'amhyb', 'Ah.11g049910' => 'amhyb', 'AL1G13870' => 'aly', 'AL1G13880' => 'aly', 'AL1G16760' => 'aly', 'AL390U10020' => 'aly', 'AL4G25520' => 'aly', 'AL6G19890' => 'aly', 'AL6G19900' => 'aly', 'AL6G19910' => 'aly', 'AL8G40100' => 'aly', 'Aqoxy2G03562' => 'aox', 'Aqoxy5G00316' => 'aox', 'Aqoxy5G00926' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1628KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1H403S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2FU6SJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.882I6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8YRY2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YN1SN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AF70II' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZA8L1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F916KL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHRD8H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KTZ8QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S22EMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8M29T' => 'arhy', 'AT1G04270' => 'ath', 'AT1G04280' => 'ath', 'AT1G06750' => 'ath', 'AT1G33850' => 'ath', 'AT2G30630' => 'ath', 'AT5G09490' => 'ath', 'AT5G09500' => 'ath', 'AT5G09510' => 'ath', 'AT5G43640' => 'ath', 'AT5G63070' => 'ath', 'ATR0605G315' => 'atr', 'Atru.chr11.175' => 'acertr', 'Atru.chr11.653' => 'acertr', 'Atru.chr3.1616' => 'acertr', 'Atru.chr4.2230' => 'acertr', 'Atru.chr4.2232' => 'acertr', 'Atru.chr5.1598' => 'acertr', 'Atru.chr5.1600' => 'acertr', 'Atru.chr5.2188' => 'acertr', 'AUR62008326' => 'cqu', 'AUR62011922' => 'cqu', 'AUR62011924' => 'cqu', 'AUR62021771' => 'cqu', 'AUR62032237' => 'cqu', 'AUR62032240' => 'cqu', 'BcaB01g05572' => 'bca', 'BcaB02g10337' => 'bca', 'BcaB04g19944' => 'bca', 'BcaB05g21548' => 'bca', 'BcaB05g21549' => 'bca', 'BcaB05g23227' => 'bca', 'BcaB06g26256' => 'bca', 'BcaB06g26257' => 'bca', 'BcaB06g28379' => 'bca', 'BcaC02g11159' => 'bca', 'BcaC03g13258' => 'bca', 'BcaC03g13259' => 'bca', 'BcaC05g24456' => 'bca', 'BcaC05g24457' => 'bca', 'BcaC07g36922' => 'bca', 'BcaC07g36923' => 'bca', 'BcaC07g42050' => 'bca', 'BcaC07g42176' => 'bca', 'BcaC07g42195' => 'bca', 'BcaC07g42196' => 'bca', 'BcaNung06674' => 'bca', 'BolC2t06351H' => 'bol', 'BolC2t06352H' => 'bol', 'BolC3t12993H' => 'bol', 'BolC4t23525H' => 'bol', 'BolC4t27475H' => 'bol', 'BolC5t29025H' => 'bol', 'BolC5t29026H' => 'bol', 'BolC8t46898H' => 'bol', 'BolC8t46899H' => 'bol', 'BolC8t52630H' => 'bol', 'BolC8t52765H' => 'bol', 'BolC9t53824H' => 'bol', 'BraA03t09760Z' => 'bra', 'BraA03t10990Z' => 'bra', 'BraA05t20413Z' => 'bra', 'BraA08t35602Z' => 'bra', 'BraA09t36458Z' => 'bra', 'BraA09t42018Z' => 'bra', 'BraA09t42129Z' => 'bra', 'BraA10t42536Z' => 'bra', 'BraA10t42537Z' => 'bra', 'C01p10690' => 'bna', 'C02p03890' => 'bna', 'C02p03900' => 'bna', 'C03p04620' => 'bna', 'C04p19870' => 'bna', 'C04p59670' => 'bna', 'C05p02460' => 'bna', 'C05p02470' => 'bna', 'C08p00980' => 'bna', 'C08p00990' => 'bna', 'C08p51030' => 'bna', 'C08p52360' => 'bna', 'C09p09120' => 'bna', 'CAN.G19.15' => 'can', 'CAN.G251.10' => 'can', 'CAN.G251.9' => 'can', 'CAN.G398.24' => 'can', 'CAN.G410.32' => 'can', 'CAN.G881.2' => 'can', 'CANSAT01G3025' => 'cansat', 'CANSAT78G1211' => 'cansat', 'CANSAT78G1218' => 'cansat', 'CANSAT78G1521' => 'cansat', 'CANSAT78G1670' => 'cansat', 'CARHR003600' => 'chi', 'CARHR003610' => 'chi', 'CARHR006290' => 'chi', 'CARHR006430' => 'chi', 'CARHR124110' => 'chi', 'CARHR203870' => 'chi', 'CARHR203880' => 'chi', 'CARHR203890' => 'chi', 'CARHR276880' => 'chi', 'Carub.0001s0346' => 'cru', 'Carub.0001s0347' => 'cru', 'Carub.0001s0607' => 'cru', 'Carub.0003s2768' => 'cru', 'Carub.0003s2769' => 'cru', 'Carub.0004s1178' => 'cru', 'Carub.0006s0806' => 'cru', 'Carub.0006s0807' => 'cru', 'Carub.0006s0808' => 'cru', 'Carub.0008s0501' => 'cru', 'Carub.0008s2379' => 'cru', 'Ca_08655_v3' => 'car', 'Ca_08922_v3' => 'car', 'Ca_08923_v3' => 'car', 'Ca_09119_v3' => 'car', 'Ca_09703_v3' => 'car', 'Ca_09705_v3' => 'car', 'Ca_09835_v3' => 'car', 'Ca_26403_v3' => 'car', 'Ca_30719_v3' => 'car', 'CBR_g17958' => 'cbr', 'CBR_g40516' => 'cbr', 'Cc00_g05350' => 'ccan', 'Cc01_g18690' => 'ccan', 'Cc03_g04830' => 'ccan', 'Cc03_g04850' => 'ccan', 'CDE02G4469' => 'cde', 'CDE06G0883' => 'cde', 'CDE06G1295' => 'cde', 'CDE06G1390' => 'cde', 'CDE07G0584' => 'cde', 'CDE07G1084' => 'cde', 'CDE08G1259' => 'cde', 'Cfa002341' => 'cfa', 'Cfa024337' => 'cfa', 'Ciclev10004749m.g' => 'ccl', 'Ciclev10006127m.g' => 'ccl', 'Ciclev10019720m.g' => 'ccl', 'Ciclev10022652m.g' => 'ccl', 'CiPaw.01G190400' => 'cil', 'CiPaw.01G190500' => 'cil', 'CiPaw.02G116400' => 'cil', 'CiPaw.02G116500' => 'cil', 'CiPaw.04G183000' => 'cil', 'CiPaw.04G183300' => 'cil', 'ClCG05G004610' => 'cla', 'ClCG05G004620' => 'cla', 'ClCG06G006730' => 'cla', 'ClCG06G006740' => 'cla', 'ClCG11G003690' => 'cla', 'COL.COLO4_08276' => 'col', 'COL.COLO4_08277' => 'col', 'COL.COLO4_15787' => 'col', 'COL.COLO4_15789' => 'col', 'Cpa.g.c44815' => 'cpa', 'Cpa.g.sc52.144' => 'cpa', 'Cpa.g.sc58.46' => 'cpa', 'Cpa.g.sc58.47' => 'cpa', 'Cre08.g360900' => 'cre', 'CsaV3_2G013030' => 'csa', 'CsaV3_2G013050' => 'csa', 'CsaV3_2G015620' => 'csa', 'CsaV3_3G012590' => 'csa', 'CsaV3_3G012600' => 'csa', 'CSS0001641' => 'camsi', 'CSS0008310' => 'camsi', 'CSS0013011' => 'camsi', 'CSS0017147' => 'camsi', 'CSS0022970' => 'camsi', 'CSS0025655' => 'camsi', 'CSS0028665' => 'camsi', 'CSS0029117' => 'camsi', 'CSS0032024' => 'camsi', 'CSS0039681' => 'camsi', 'CSS0046516' => 'camsi', 'CSS0050307' => 'camsi', 'DCAR_005871' => 'dca', 'DCAR_007342' => 'dca', 'DCAR_024228' => 'dca', 'DCAR_027277' => 'dca', 'DCAR_030718' => 'dca', 'Dinv20287' => 'din', 'Dinv22461' => 'din', 'Dinv22464' => 'din', 'Dinv29912' => 'din', 'Dinv29913' => 'din', 'Dinv34580' => 'din', 'Dinv34582' => 'din', 'Dinv44632' => 'din', 'Duzib052G0266' => 'dzi', 'Duzib133G0907' => 'dzi', 'Duzib133G1034' => 'dzi', 'Duzib138G0207' => 'dzi', 'Duzib138G0491' => 'dzi', 'Duzib151G0812' => 'dzi', 'Duzib151G1166' => 'dzi', 'Duzib168G0192' => 'dzi', 'Duzib211G0077' => 'dzi', 'Duzib212G0429' => 'dzi', 'Duzib212G0472' => 'dzi', 'ECA233G2617' => 'eca', 'ECA236G4188' => 'eca', 'ECA240G0936' => 'eca', 'ECA240G1129' => 'eca', 'ECA247G0623' => 'eca', 'EL10Ac5g10451' => 'bvu', 'EL10Ac5g10453' => 'bvu', 'EL10Ac5g10894' => 'bvu', 'Eucgr.H00192' => 'egr', 'Eucgr.H00193' => 'egr', 'Eucgr.H00194' => 'egr', 'Eucgr.J01562' => 'egr', 'Eucgr.K03301' => 'egr', 'FAN02G0632' => 'fan', 'FAN05G5378' => 'fan', 'FAN09G3247' => 'fan', 'FAN12G0435' => 'fan', 'FAN12G2426' => 'fan', 'FAN14G1707' => 'fan', 'FAN14G4725' => 'fan', 'FAN15G2071' => 'fan', 'FAN17G3065' => 'fan', 'FAN19G1376' => 'fan', 'FAN20G0354' => 'fan', 'FAN20G2429' => 'fan', 'FAN20G2658' => 'fan', 'FAN24G2343' => 'fan', 'FAN27G2362' => 'fan', 'FAN28G1765' => 'fan', 'FvH4_1g16020' => 'fve', 'FvH4_2g04890' => 'fve', 'FvH4_2g22270' => 'fve', 'FvH4_4g02630' => 'fve', 'FvH4_4g02640' => 'fve', 'FvH4_6g02650' => 'fve', 'Glyma.02G140600' => 'gma', 'Glyma.03G159900' => 'gma', 'Glyma.05G234800' => 'gma', 'Glyma.07G269600' => 'gma', 'Glyma.08G042300' => 'gma', 'Glyma.10G033500' => 'gma', 'Glyma.10G185200' => 'gma', 'Glyma.17G004300' => 'gma', 'Glyma.19G161900' => 'gma', 'Glyma.20G205100' => 'gma', 'Glyma.20G205200' => 'gma', 'Gohir.A01G139101' => 'ghi', 'Gohir.A02G035600' => 'ghi', 'Gohir.A02G117901' => 'ghi', 'Gohir.A07G210100' => 'ghi', 'Gohir.A07G210200' => 'ghi', 'Gohir.A08G061100' => 'ghi', 'Gohir.A09G223000' => 'ghi', 'Gohir.A09G223100' => 'ghi', 'Gohir.A10G113900' => 'ghi', 'Gohir.A10G114000' => 'ghi', 'Gohir.D02G042300' => 'ghi', 'Gohir.D07G216100' => 'ghi', 'Gohir.D07G216200' => 'ghi', 'Gohir.D08G070400' => 'ghi', 'Gohir.D09G225000' => 'ghi', 'Gohir.D09G225100' => 'ghi', 'Gohir.D10G152300' => 'ghi', 'Gohir.D10G153200' => 'ghi', 'Gohir.D11G133701' => 'ghi', 'Gorai.004G074100' => 'gra', 'Gorai.005G046800' => 'gra', 'Gorai.006G246500' => 'gra', 'Gorai.006G246600' => 'gra', 'Gorai.007G142900' => 'gra', 'Gorai.011G171000' => 'gra', 'Gorai.011G171100' => 'gra', 'Gorai.013G104300' => 'gra', 'Gorai.013G104400' => 'gra', 'GSVIVG01000754001' => 'vvi', 'GSVIVG01000756001' => 'vvi', 'GSVIVG01010903001' => 'vvi', 'GSVIVG01017623001' => 'vvi', 'GSVIVG01018113001' => 'vvi', 'GSVIVG01018116001' => 'vvi', 'GSVIVG01018118001' => 'vvi', 'HanXRQChr03g0076211' => 'han', 'HanXRQChr03g0092431' => 'han', 'HanXRQChr03g0092441' => 'han', 'HanXRQChr03g0092591' => 'han', 'HanXRQChr03g0092671' => 'han', 'HanXRQChr03g0092681' => 'han', 'HanXRQChr03g0092691' => 'han', 'HanXRQChr03g0092701' => 'han', 'HanXRQChr03g0092721' => 'han', 'HanXRQChr03g0092731' => 'han', 'HanXRQChr04g0113681' => 'han', 'HanXRQChr10g0281371' => 'han', 'HanXRQChr11g0337141' => 'han', 'HanXRQChr13g0424521' => 'han', 'HanXRQChr13g0424531' => 'han', 'HanXRQChr13g0424541' => 'han', 'HanXRQChr16g0498221' => 'han', 'Haze_04377' => 'cav', 'Haze_11298' => 'cav', 'Haze_24547' => 'cav', 'Haze_24550' => 'cav', 'Haze_26587' => 'cav', 'Hma1.2p1_0650F.1_g195410' => 'hma', 'Hma1.2p1_0893F.1_g233470' => 'hma', 'HPP92_006508' => 'vpl', 'HPP92_024780' => 'vpl', 'Hund02688' => 'sun', 'Hund09380' => 'sun', 'Hund09381' => 'sun', 'Hund09832' => 'sun', 'Hund09833' => 'sun', 'Hund11351' => 'sun', 'Hund11513' => 'sun', 'Lalb_Chr06g0162591' => 'lal', 'Lalb_Chr06g0162601' => 'lal', 'Lalb_Chr06g0169321' => 'lal', 'Lalb_Chr09g0330951' => 'lal', 'Lalb_Chr16g0387631' => 'lal', 'Lalb_Chr21g0306241' => 'lal', 'Lalb_Chr25g0290051' => 'lal', 'Lalb_Chr25g0290061' => 'lal', 'Lalb_Chr25g0290071' => 'lal', 'Lj1g0003876' => 'lja', 'Lj1P1207T36' => 'lonja', 'Lj2C1156G12' => 'lonja', 'Lj3A793G39' => 'lonja', 'Lj3C580G2' => 'lonja', 'Lj3C780G2' => 'lonja', 'Lj3C780T4' => 'lonja', 'Lj3C793G9' => 'lonja', 'Lj4g0012960' => 'lja', 'Lj5g0021252' => 'lja', 'Lj5g0021484' => 'lja', 'Lj5g0024528' => 'lja', 'Lj6A399T12' => 'lonja', 'Lj6A656G65' => 'lonja', 'Lsat_1_v5_gn_3_125500' => 'lsa', 'Lsat_1_v5_gn_3_125540' => 'lsa', 'Lsat_1_v5_gn_5_72701' => 'lsa', 'Lsat_1_v5_gn_8_91560' => 'lsa', 'Lsat_1_v5_gn_9_9640' => 'lsa', 'Manes.01G200600' => 'mes', 'Manes.01G200700' => 'mes', 'Manes.03G168900' => 'mes', 'Manes.03G169000' => 'mes', 'Manes.05G085801' => 'mes', 'Manes.05G086200' => 'mes', 'Manes.15G036700' => 'mes', 'Manes.15G036900' => 'mes', 'Mapoly0004s0172' => 'mpo', 'Mapoly0023s0001' => 'mpo', 'Mapoly0142s0012' => 'mpo', 'MBI01_g32854_MAGBIO' => 'mbi', 'MBI11_g24427_MAGBIO' => 'mbi', 'MBI11_g47319_MAGBIO' => 'mbi', 'MCO01G433' => 'mco', 'MD00G1187800' => 'mdo', 'MD04G1226500' => 'mdo', 'MD05G1203900' => 'mdo', 'MD10G1191100' => 'mdo', 'MD12G1243500' => 'mdo', 'MD13G1207000' => 'mdo', 'MD13G1207100' => 'mdo', 'MD16G1208600' => 'mdo', 'Medtr1g050352' => 'mtr', 'Medtr1g070385' => 'mtr', 'Medtr1g070450' => 'mtr', 'Medtr1g075200' => 'mtr', 'Medtr1g075250' => 'mtr', 'Medtr1g075260' => 'mtr', 'Medtr1g475250' => 'mtr', 'Medtr4g075450' => 'mtr', 'Medtr7g096300' => 'mtr', 'Medtr8g105110' => 'mtr', 'MELO3C006470.2' => 'cme', 'MELO3C006471.2' => 'cme', 'MELO3C020772.2' => 'cme', 'MELO3C026780.2' => 'cme', 'MELO3C026781.2' => 'cme', 'Migut.D00390' => 'egut', 'Migut.G00435' => 'egut', 'Migut.G00436' => 'egut', 'Migut.G00718' => 'egut', 'MSTRG.21891' => 'ama', 'MSTRG.26910' => 'ama', 'MSTRG.4099' => 'ama', 'MSTRG.9925' => 'ama', 'Nitab4.5_0000165g0010' => 'nta', 'Nitab4.5_0000209g0180' => 'nta', 'Nitab4.5_0000244g0440' => 'nta', 'Nitab4.5_0000525g0220' => 'nta', 'Nitab4.5_0001597g0020' => 'nta', 'Nitab4.5_0001878g0040' => 'nta', 'Nitab4.5_0001878g0060' => 'nta', 'Nitab4.5_0002838g0100' => 'nta', 'Nitab4.5_0002838g0120' => 'nta', 'Nitab4.5_0004798g0030' => 'nta', 'Nitab4.5_0005420g0010' => 'nta', 'Nitab4.5_0005507g0010' => 'nta', 'Nitab4.5_0005574g0020' => 'nta', 'Nitab4.5_0005838g0010' => 'nta', 'Nitab4.5_0010580g0020' => 'nta', 'Nn1g02599' => 'nnu', 'Nn1g02608' => 'nnu', 'Nn3g17742' => 'nnu', 'Nn3g19534' => 'nnu', 'Nn3g19535' => 'nnu', 'Oeu008790.1' => 'oeu', 'Oeu008792.1' => 'oeu', 'Oeu032590.1' => 'oeu', 'Oeu035349.1' => 'oeu', 'Oeu049791.1' => 'oeu', 'Os01g0774500' => 'osa', 'Os03g0628800' => 'osa', 'Os03g0798600' => 'osa', 'Os05g0508800' => 'osa', 'Peaxi162Scf00036g02018' => 'pax', 'Peaxi162Scf00578g00032' => 'pax', 'Peaxi162Scf00578g00317' => 'pax', 'Peaxi162Scf00785g00114' => 'pax', 'Peaxi162Scf00813g00119' => 'pax', 'Peaxi162Scf00906g00227' => 'pax', 'PGR004G0875' => 'pgr', 'PGR004G2424' => 'pgr', 'PGR031G1239' => 'pgr', 'PGR031G2474' => 'pgr', 'PGR044G0423' => 'pgr', 'PGSC0003DMG400001128' => 'stu', 'PGSC0003DMG400007336' => 'stu', 'PGSC0003DMG400016318' => 'stu', 'PGSC0003DMG400016319' => 'stu', 'PGSC0003DMG400018074' => 'stu', 'Phvul.001G157700' => 'pvu', 'Phvul.002G148550' => 'pvu', 'Phvul.002G320200' => 'pvu', 'Phvul.003G089200' => 'pvu', 'Phvul.007G126000' => 'pvu', 'Phvul.007G126100' => 'pvu', 'Phvul.007G178000' => 'pvu', 'Phvul.007G178200' => 'pvu', 'Potri.002G043000' => 'ptr', 'Potri.002G043200' => 'ptr', 'Potri.003G123750' => 'ptr', 'Potri.005G055401' => 'ptr', 'Potri.005G219700' => 'ptr', 'Potri.005G220000' => 'ptr', 'Potri.008G161901' => 'ptr', 'Potri.008G162000' => 'ptr', 'Potri.008G162400' => 'ptr', 'Potri.010G076900' => 'ptr', 'Pp3c12_9180' => 'ppa', 'Pp3c13_19770' => 'ppa', 'Pp3c14_22950' => 'ppa', 'Pp3c16_12160' => 'ppa', 'Pp3c27_7820' => 'ppa', 'Pp3c2_3490' => 'ppa', 'Pp3c3_23700' => 'ppa', 'Pp3c3_36520' => 'ppa', 'Pp3c4_15250' => 'ppa', 'PRCOL_00007002' => 'pco', 'Prupe.1G030600' => 'ppe', 'Prupe.1G030700' => 'ppe', 'Prupe.6G345200' => 'ppe', 'Prupe.8G230300' => 'ppe', 'Prupe.8G230500' => 'ppe', 'Psat3g059600' => 'psa', 'Psat5g200920' => 'psa', 'Psat6g056440' => 'psa', 'Psat6g057360' => 'psa', 'Psat6g134120' => 'psa', 'Psat6g134160' => 'psa', 'Psat7g008640' => 'psa', 'Psat7g185240' => 'psa', 'PSO017G1330' => 'pso', 'PSO063G6097' => 'pso', 'PSO170G0835' => 'pso', 'PSO170G2499' => 'pso', 'PSO210G5058' => 'pso', 'PSO210G6154' => 'pso', 'PSO585G0031' => 'pso', 'PSO832G0264' => 'pso', 'PSO832G4288' => 'pso', 'QL03p027355' => 'qlo', 'QL03p027430' => 'qlo', 'QL04p081380' => 'qlo', 'QL06p015642' => 'qlo', 'QL06p015650' => 'qlo', 'QL06p015686' => 'qlo', 'QL12p042927' => 'qlo', 'QL93p1863_0035' => 'qlo', 'RcHm_v2.0_Chr3g0450581' => 'rch', 'RcHm_v2.0_Chr4g0390371' => 'rch', 'RcHm_v2.0_Chr4g0390381' => 'rch', 'RcHm_v2.0_Chr4g0390491' => 'rch', 'RcHm_v2.0_Chr4g0390501' => 'rch', 'RcHm_v2.0_Chr6g0289231' => 'rch', 'Rhsim04G0190400' => 'rsi', 'Rhsim04G0190500' => 'rsi', 'Rhsim04G0190600' => 'rsi', 'Rhsim13G0031400' => 'rsi', 'Rhsim13G0165600' => 'rsi', 'RhsimUnG0114600' => 'rsi', 'RhsimUnG0114700' => 'rsi', 'Sabra02G0034800' => 'sbr', 'Sabra02G0035100' => 'sbr', 'Sabra05G0168600' => 'sbr', 'Sabra05G0168800' => 'sbr', 'Sabra08G0123700' => 'sbr', 'Sabra10G0031900' => 'sbr', 'Sabra13G0039000' => 'sbr', 'SalBow2G0782' => 'sbo', 'SalBow2G1403' => 'sbo', 'SalBow4G0074' => 'sbo', 'SalBow4G2635' => 'sbo', 'SalBow5G3010' => 'sbo', 'Sc05g0000870' => 'sci', 'Sc05g0000890' => 'sci', 'Sc13g0005000' => 'sci', 'Sc13g0005030' => 'sci', 'Sc19g0003790' => 'sci', 'Sc19g0003800' => 'sci', 'Sed0003467' => 'sed', 'Sed0009355' => 'sed', 'Sed0009894' => 'sed', 'Sed0011972' => 'sed', 'Sed0021483' => 'sed', 'Sed0021750' => 'sed', 'Sed0026279' => 'sed', 'SEGI_05312' => 'sgi', 'SEGI_10112' => 'sgi', 'SEGI_15835' => 'sgi', 'SEGI_30386' => 'sgi', 'SEGI_34122' => 'sgi', 'SEGI_35063' => 'sgi', 'SGA_v2.0_scaffold101G29794' => 'sas', 'SGA_v2.0_scaffold1G00573' => 'sas', 'SGA_v2.0_scaffold79G25637' => 'sas', 'SGA_v2.0_scaffold88G27283' => 'sas', 'SGA_v2.0_scaffold88G27285' => 'sas', 'SGA_v2.0_scaffold88G27331' => 'sas', 'SHI09937' => 'shi', 'SMO119G0302' => 'smo', 'SMO137G0231' => 'smo', 'SMO367G1151' => 'smo', 'Solyc02g082000.3' => 'sly', 'Solyc06g031670.3' => 'sly', 'Solyc06g053810.3' => 'sly', 'Solyc07g025457.1' => 'sly', 'Solyc08g059740.1' => 'sly', 'Solyc08g059750.3' => 'sly', 'Solyc09g083370.3' => 'sly', 'Solyc12g038950.3' => 'sly', 'Sopen02g026630' => 'spe', 'Sopen06g018930' => 'spe', 'Sopen06g018940' => 'spe', 'Sopen08g009460' => 'spe', 'Sopen09g032290' => 'spe', 'Sp1g03080' => 'spa', 'Sp1g03090' => 'spa', 'Sp1g05480' => 'spa', 'Sp2g07860' => 'spa', 'Sp2g08430' => 'spa', 'Sp2g08440' => 'spa', 'Sp2g26200' => 'spa', 'Sp4g13170' => 'spa', 'Sp6g33840' => 'spa', 'SpUn1204_0010' => 'spa', 'TAR365G0908' => 'tar', 'TAR381G1270' => 'tar', 'TAR381G1651' => 'tar', 'TAR625G1131' => 'tar', 'TAR633G0962' => 'tar', 'TAR633G1729' => 'tar', 'TAR633G1864' => 'tar', 'TAR636G0221' => 'tar', 'TAR636G0314' => 'tar', 'TAR636G3202' => 'tar', 'THA.LOC104800805' => 'tha', 'THA.LOC104801096' => 'tha', 'THA.LOC104801555' => 'tha', 'THA.LOC104808491' => 'tha', 'THA.LOC104808595' => 'tha', 'THA.LOC104815985' => 'tha', 'THA.LOC104822250' => 'tha', 'THA.LOC104826071' => 'tha', 'Thecc.01G265200' => 'tca', 'Thecc.01G265300' => 'tca', 'Thecc.01G265700' => 'tca', 'Thecc.03G109100' => 'tca', 'Thecc.04G245900' => 'tca', 'Thecc.04G246000' => 'tca', 'Thhalv10003334m.g' => 'esa', 'Thhalv10005508m.g' => 'esa', 'Thhalv10005643m.g' => 'esa', 'Thhalv10007316m.g' => 'esa', 'Thhalv10009006m.g' => 'esa', 'Thhalv10009309m.g' => 'esa', 'Thhalv10014917m.g' => 'esa', 'Thhalv10014919m.g' => 'esa', 'Thhalv10015393m.g' => 'esa', 'Thhalv10016515m.g' => 'esa', 'Thhalv10029242m.g' => 'esa', 'TPR.G16654' => 'tpr', 'TPR.G20589' => 'tpr', 'TPR.G23029' => 'tpr', 'TPR.G27731' => 'tpr', 'TPR.G28889' => 'tpr', 'TPR.G28899' => 'tpr', 'TPR.G30846' => 'tpr', 'TPR.G5452' => 'tpr', 'TPR.G5713' => 'tpr', 'TPR.G9046' => 'tpr', 'TPR.G9061' => 'tpr', 'TWI09G1075' => 'twi', 'TWI12G0806' => 'twi', 'TWI18G0108' => 'twi', 'TWI53G1361' => 'twi', 'TWI73G0185' => 'twi', 'TWI73G0427' => 'twi', 'unitig_37.g12001' => 'ugi', 'unitig_747.g21660' => 'ugi', 'unitig_748.g7232' => 'ugi', 'unitig_748.g7315' => 'ugi', 'unitig_85.g27262' => 'ugi', 'unitig_92.g28220' => 'ugi', 'vmacro02632' => 'vma', 'vmacro08410' => 'vma', 'vmacro08411' => 'vma', 'vmacro15407' => 'vma', 'VMungo0251G3619' => 'vmu', 'VMungo0720G1204' => 'vmu', 'VMungo0720G1918' => 'vmu', 'VMungo0720G2387' => 'vmu', 'VMungo0720G2961' => 'vmu', 'VMungo1215G2154' => 'vmu', 'VMungo1383G2411' => 'vmu', 'Zm00001eb051130' => 'zma', 'Zm00001eb116830' => 'zma', 'Zm00001eb116850' => 'zma', 'Zm00001eb151740' => 'zma', 'Zm00001eb292360' => 'zma', 'Zm00001eb301640' => 'zma' ) $gf_id = 'HOM05D000856' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000856' ) $data_identifier = 'HOM05D000856' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 13, 'ath' => (int) 10, 'atr' => (int) 1, 'acertr' => (int) 8, 'cqu' => (int) 6, 'bca' => (int) 21, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 11, 'car' => (int) 9, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 8, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 5, 'fan' => (int) 16, 'fve' => (int) 6, 'gma' => (int) 11, 'ghi' => (int) 19, 'gra' => (int) 9, 'vvi' => (int) 7, 'han' => (int) 17, 'cav' => (int) 5, 'hma' => (int) 2, 'vpl' => (int) 2, 'sun' => (int) 7, 'lal' => (int) 9, 'lja' => (int) 5, 'lonja' => (int) 9, 'lsa' => (int) 5, 'mes' => (int) 8, 'mpo' => (int) 3, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 10, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 15, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 9, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 9, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 6, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 5, 'spa' => (int) 10, 'tar' => (int) 10, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 11, 'tpr' => (int) 11, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 4, 'vmu' => (int) 7, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb301640' $species_info = array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ) $local_species = 'bra' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000856', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p00010' => 'bna', 'A03p04160' => 'bna', 'A03p17160' => 'bna', 'A04p23370' => 'bna', 'A05p14860' => 'bna', 'A08p37020' => 'bna', 'A09p08050' => 'bna', 'A09p66800' => 'bna', 'A09p67940' => 'bna', 'A10p02680' => 'bna', 'A10p05320' => 'bna', 'Aa31LG1G20560' => 'aar', 'Aa31LG1G20610' => 'aar', 'Aa31LG1G7810' => 'aar', 'Aa31LG5G3590' => 'aar', 'Aa31LG5G6140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3819' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4683' => 'aag', 'Actinidia04480' => 'ach', 'Actinidia05466' => 'ach', 'Actinidia08445' => 'ach', 'Actinidia21170' => 'ach', 'Actinidia24812' => 'ach', 'Actinidia24951' => 'ach', 'Actinidia40088' => 'ach', 'Ah.02g111660' => 'amhyb', 'Ah.11g048900' => 'amhyb', 'Ah.11g049910' => 'amhyb', 'AL1G13870' => 'aly', 'AL1G13880' => 'aly', 'AL1G16760' => 'aly', 'AL390U10020' => 'aly', 'AL4G25520' => 'aly', 'AL6G19890' => 'aly', 'AL6G19900' => 'aly', 'AL6G19910' => 'aly', 'AL8G40100' => 'aly', 'Aqoxy2G03562' => 'aox', 'Aqoxy5G00316' => 'aox', 'Aqoxy5G00926' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1628KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1H403S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2FU6SJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.882I6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8YRY2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YN1SN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AF70II' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZA8L1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F916KL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHRD8H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KTZ8QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S22EMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8M29T' => 'arhy', 'AT1G04270' => 'ath', 'AT1G04280' => 'ath', 'AT1G06750' => 'ath', 'AT1G33850' => 'ath', 'AT2G30630' => 'ath', 'AT5G09490' => 'ath', 'AT5G09500' => 'ath', 'AT5G09510' => 'ath', 'AT5G43640' => 'ath', 'AT5G63070' => 'ath', 'ATR0605G315' => 'atr', 'Atru.chr11.175' => 'acertr', 'Atru.chr11.653' => 'acertr', 'Atru.chr3.1616' => 'acertr', 'Atru.chr4.2230' => 'acertr', 'Atru.chr4.2232' => 'acertr', 'Atru.chr5.1598' => 'acertr', 'Atru.chr5.1600' => 'acertr', 'Atru.chr5.2188' => 'acertr', 'AUR62008326' => 'cqu', 'AUR62011922' => 'cqu', 'AUR62011924' => 'cqu', 'AUR62021771' => 'cqu', 'AUR62032237' => 'cqu', 'AUR62032240' => 'cqu', 'BcaB01g05572' => 'bca', 'BcaB02g10337' => 'bca', 'BcaB04g19944' => 'bca', 'BcaB05g21548' => 'bca', 'BcaB05g21549' => 'bca', 'BcaB05g23227' => 'bca', 'BcaB06g26256' => 'bca', 'BcaB06g26257' => 'bca', 'BcaB06g28379' => 'bca', 'BcaC02g11159' => 'bca', 'BcaC03g13258' => 'bca', 'BcaC03g13259' => 'bca', 'BcaC05g24456' => 'bca', 'BcaC05g24457' => 'bca', 'BcaC07g36922' => 'bca', 'BcaC07g36923' => 'bca', 'BcaC07g42050' => 'bca', 'BcaC07g42176' => 'bca', 'BcaC07g42195' => 'bca', 'BcaC07g42196' => 'bca', 'BcaNung06674' => 'bca', 'BolC2t06351H' => 'bol', 'BolC2t06352H' => 'bol', 'BolC3t12993H' => 'bol', 'BolC4t23525H' => 'bol', 'BolC4t27475H' => 'bol', 'BolC5t29025H' => 'bol', 'BolC5t29026H' => 'bol', 'BolC8t46898H' => 'bol', 'BolC8t46899H' => 'bol', 'BolC8t52630H' => 'bol', 'BolC8t52765H' => 'bol', 'BolC9t53824H' => 'bol', 'BraA03t09760Z' => 'bra', 'BraA03t10990Z' => 'bra', 'BraA05t20413Z' => 'bra', 'BraA08t35602Z' => 'bra', 'BraA09t36458Z' => 'bra', 'BraA09t42018Z' => 'bra', 'BraA09t42129Z' => 'bra', 'BraA10t42536Z' => 'bra', 'BraA10t42537Z' => 'bra', 'C01p10690' => 'bna', 'C02p03890' => 'bna', 'C02p03900' => 'bna', 'C03p04620' => 'bna', 'C04p19870' => 'bna', 'C04p59670' => 'bna', 'C05p02460' => 'bna', 'C05p02470' => 'bna', 'C08p00980' => 'bna', 'C08p00990' => 'bna', 'C08p51030' => 'bna', 'C08p52360' => 'bna', 'C09p09120' => 'bna', 'CAN.G19.15' => 'can', 'CAN.G251.10' => 'can', 'CAN.G251.9' => 'can', 'CAN.G398.24' => 'can', 'CAN.G410.32' => 'can', 'CAN.G881.2' => 'can', 'CANSAT01G3025' => 'cansat', 'CANSAT78G1211' => 'cansat', 'CANSAT78G1218' => 'cansat', 'CANSAT78G1521' => 'cansat', 'CANSAT78G1670' => 'cansat', 'CARHR003600' => 'chi', 'CARHR003610' => 'chi', 'CARHR006290' => 'chi', 'CARHR006430' => 'chi', 'CARHR124110' => 'chi', 'CARHR203870' => 'chi', 'CARHR203880' => 'chi', 'CARHR203890' => 'chi', 'CARHR276880' => 'chi', 'Carub.0001s0346' => 'cru', 'Carub.0001s0347' => 'cru', 'Carub.0001s0607' => 'cru', 'Carub.0003s2768' => 'cru', 'Carub.0003s2769' => 'cru', 'Carub.0004s1178' => 'cru', 'Carub.0006s0806' => 'cru', 'Carub.0006s0807' => 'cru', 'Carub.0006s0808' => 'cru', 'Carub.0008s0501' => 'cru', 'Carub.0008s2379' => 'cru', 'Ca_08655_v3' => 'car', 'Ca_08922_v3' => 'car', 'Ca_08923_v3' => 'car', 'Ca_09119_v3' => 'car', 'Ca_09703_v3' => 'car', 'Ca_09705_v3' => 'car', 'Ca_09835_v3' => 'car', 'Ca_26403_v3' => 'car', 'Ca_30719_v3' => 'car', 'CBR_g17958' => 'cbr', 'CBR_g40516' => 'cbr', 'Cc00_g05350' => 'ccan', 'Cc01_g18690' => 'ccan', 'Cc03_g04830' => 'ccan', 'Cc03_g04850' => 'ccan', 'CDE02G4469' => 'cde', 'CDE06G0883' => 'cde', 'CDE06G1295' => 'cde', 'CDE06G1390' => 'cde', 'CDE07G0584' => 'cde', 'CDE07G1084' => 'cde', 'CDE08G1259' => 'cde', 'Cfa002341' => 'cfa', 'Cfa024337' => 'cfa', 'Ciclev10004749m.g' => 'ccl', 'Ciclev10006127m.g' => 'ccl', 'Ciclev10019720m.g' => 'ccl', 'Ciclev10022652m.g' => 'ccl', 'CiPaw.01G190400' => 'cil', 'CiPaw.01G190500' => 'cil', 'CiPaw.02G116400' => 'cil', 'CiPaw.02G116500' => 'cil', 'CiPaw.04G183000' => 'cil', 'CiPaw.04G183300' => 'cil', 'ClCG05G004610' => 'cla', 'ClCG05G004620' => 'cla', 'ClCG06G006730' => 'cla', 'ClCG06G006740' => 'cla', 'ClCG11G003690' => 'cla', 'COL.COLO4_08276' => 'col', 'COL.COLO4_08277' => 'col', 'COL.COLO4_15787' => 'col', 'COL.COLO4_15789' => 'col', 'Cpa.g.c44815' => 'cpa', 'Cpa.g.sc52.144' => 'cpa', 'Cpa.g.sc58.46' => 'cpa', 'Cpa.g.sc58.47' => 'cpa', 'Cre08.g360900' => 'cre', 'CsaV3_2G013030' => 'csa', 'CsaV3_2G013050' => 'csa', 'CsaV3_2G015620' => 'csa', 'CsaV3_3G012590' => 'csa', 'CsaV3_3G012600' => 'csa', 'CSS0001641' => 'camsi', 'CSS0008310' => 'camsi', 'CSS0013011' => 'camsi', 'CSS0017147' => 'camsi', 'CSS0022970' => 'camsi', 'CSS0025655' => 'camsi', 'CSS0028665' => 'camsi', 'CSS0029117' => 'camsi', 'CSS0032024' => 'camsi', 'CSS0039681' => 'camsi', 'CSS0046516' => 'camsi', 'CSS0050307' => 'camsi', 'DCAR_005871' => 'dca', 'DCAR_007342' => 'dca', 'DCAR_024228' => 'dca', 'DCAR_027277' => 'dca', 'DCAR_030718' => 'dca', 'Dinv20287' => 'din', 'Dinv22461' => 'din', 'Dinv22464' => 'din', 'Dinv29912' => 'din', 'Dinv29913' => 'din', 'Dinv34580' => 'din', 'Dinv34582' => 'din', 'Dinv44632' => 'din', 'Duzib052G0266' => 'dzi', 'Duzib133G0907' => 'dzi', 'Duzib133G1034' => 'dzi', 'Duzib138G0207' => 'dzi', 'Duzib138G0491' => 'dzi', 'Duzib151G0812' => 'dzi', 'Duzib151G1166' => 'dzi', 'Duzib168G0192' => 'dzi', 'Duzib211G0077' => 'dzi', 'Duzib212G0429' => 'dzi', 'Duzib212G0472' => 'dzi', 'ECA233G2617' => 'eca', 'ECA236G4188' => 'eca', 'ECA240G0936' => 'eca', 'ECA240G1129' => 'eca', 'ECA247G0623' => 'eca', 'EL10Ac5g10451' => 'bvu', 'EL10Ac5g10453' => 'bvu', 'EL10Ac5g10894' => 'bvu', 'Eucgr.H00192' => 'egr', 'Eucgr.H00193' => 'egr', 'Eucgr.H00194' => 'egr', 'Eucgr.J01562' => 'egr', 'Eucgr.K03301' => 'egr', 'FAN02G0632' => 'fan', 'FAN05G5378' => 'fan', 'FAN09G3247' => 'fan', 'FAN12G0435' => 'fan', 'FAN12G2426' => 'fan', 'FAN14G1707' => 'fan', 'FAN14G4725' => 'fan', 'FAN15G2071' => 'fan', 'FAN17G3065' => 'fan', 'FAN19G1376' => 'fan', 'FAN20G0354' => 'fan', 'FAN20G2429' => 'fan', 'FAN20G2658' => 'fan', 'FAN24G2343' => 'fan', 'FAN27G2362' => 'fan', 'FAN28G1765' => 'fan', 'FvH4_1g16020' => 'fve', 'FvH4_2g04890' => 'fve', 'FvH4_2g22270' => 'fve', 'FvH4_4g02630' => 'fve', 'FvH4_4g02640' => 'fve', 'FvH4_6g02650' => 'fve', 'Glyma.02G140600' => 'gma', 'Glyma.03G159900' => 'gma', 'Glyma.05G234800' => 'gma', 'Glyma.07G269600' => 'gma', 'Glyma.08G042300' => 'gma', 'Glyma.10G033500' => 'gma', 'Glyma.10G185200' => 'gma', 'Glyma.17G004300' => 'gma', 'Glyma.19G161900' => 'gma', 'Glyma.20G205100' => 'gma', 'Glyma.20G205200' => 'gma', 'Gohir.A01G139101' => 'ghi', 'Gohir.A02G035600' => 'ghi', 'Gohir.A02G117901' => 'ghi', 'Gohir.A07G210100' => 'ghi', 'Gohir.A07G210200' => 'ghi', 'Gohir.A08G061100' => 'ghi', 'Gohir.A09G223000' => 'ghi', 'Gohir.A09G223100' => 'ghi', 'Gohir.A10G113900' => 'ghi', 'Gohir.A10G114000' => 'ghi', 'Gohir.D02G042300' => 'ghi', 'Gohir.D07G216100' => 'ghi', 'Gohir.D07G216200' => 'ghi', 'Gohir.D08G070400' => 'ghi', 'Gohir.D09G225000' => 'ghi', 'Gohir.D09G225100' => 'ghi', 'Gohir.D10G152300' => 'ghi', 'Gohir.D10G153200' => 'ghi', 'Gohir.D11G133701' => 'ghi', 'Gorai.004G074100' => 'gra', 'Gorai.005G046800' => 'gra', 'Gorai.006G246500' => 'gra', 'Gorai.006G246600' => 'gra', 'Gorai.007G142900' => 'gra', 'Gorai.011G171000' => 'gra', 'Gorai.011G171100' => 'gra', 'Gorai.013G104300' => 'gra', 'Gorai.013G104400' => 'gra', 'GSVIVG01000754001' => 'vvi', 'GSVIVG01000756001' => 'vvi', 'GSVIVG01010903001' => 'vvi', 'GSVIVG01017623001' => 'vvi', 'GSVIVG01018113001' => 'vvi', 'GSVIVG01018116001' => 'vvi', 'GSVIVG01018118001' => 'vvi', 'HanXRQChr03g0076211' => 'han', 'HanXRQChr03g0092431' => 'han', 'HanXRQChr03g0092441' => 'han', 'HanXRQChr03g0092591' => 'han', 'HanXRQChr03g0092671' => 'han', 'HanXRQChr03g0092681' => 'han', 'HanXRQChr03g0092691' => 'han', 'HanXRQChr03g0092701' => 'han', 'HanXRQChr03g0092721' => 'han', 'HanXRQChr03g0092731' => 'han', 'HanXRQChr04g0113681' => 'han', 'HanXRQChr10g0281371' => 'han', 'HanXRQChr11g0337141' => 'han', 'HanXRQChr13g0424521' => 'han', 'HanXRQChr13g0424531' => 'han', 'HanXRQChr13g0424541' => 'han', 'HanXRQChr16g0498221' => 'han', 'Haze_04377' => 'cav', 'Haze_11298' => 'cav', 'Haze_24547' => 'cav', 'Haze_24550' => 'cav', 'Haze_26587' => 'cav', 'Hma1.2p1_0650F.1_g195410' => 'hma', 'Hma1.2p1_0893F.1_g233470' => 'hma', 'HPP92_006508' => 'vpl', 'HPP92_024780' => 'vpl', 'Hund02688' => 'sun', 'Hund09380' => 'sun', 'Hund09381' => 'sun', 'Hund09832' => 'sun', 'Hund09833' => 'sun', 'Hund11351' => 'sun', 'Hund11513' => 'sun', 'Lalb_Chr06g0162591' => 'lal', 'Lalb_Chr06g0162601' => 'lal', 'Lalb_Chr06g0169321' => 'lal', 'Lalb_Chr09g0330951' => 'lal', 'Lalb_Chr16g0387631' => 'lal', 'Lalb_Chr21g0306241' => 'lal', 'Lalb_Chr25g0290051' => 'lal', 'Lalb_Chr25g0290061' => 'lal', 'Lalb_Chr25g0290071' => 'lal', 'Lj1g0003876' => 'lja', 'Lj1P1207T36' => 'lonja', 'Lj2C1156G12' => 'lonja', 'Lj3A793G39' => 'lonja', 'Lj3C580G2' => 'lonja', 'Lj3C780G2' => 'lonja', 'Lj3C780T4' => 'lonja', 'Lj3C793G9' => 'lonja', 'Lj4g0012960' => 'lja', 'Lj5g0021252' => 'lja', 'Lj5g0021484' => 'lja', 'Lj5g0024528' => 'lja', 'Lj6A399T12' => 'lonja', 'Lj6A656G65' => 'lonja', 'Lsat_1_v5_gn_3_125500' => 'lsa', 'Lsat_1_v5_gn_3_125540' => 'lsa', 'Lsat_1_v5_gn_5_72701' => 'lsa', 'Lsat_1_v5_gn_8_91560' => 'lsa', 'Lsat_1_v5_gn_9_9640' => 'lsa', 'Manes.01G200600' => 'mes', 'Manes.01G200700' => 'mes', 'Manes.03G168900' => 'mes', 'Manes.03G169000' => 'mes', 'Manes.05G085801' => 'mes', 'Manes.05G086200' => 'mes', 'Manes.15G036700' => 'mes', 'Manes.15G036900' => 'mes', 'Mapoly0004s0172' => 'mpo', 'Mapoly0023s0001' => 'mpo', 'Mapoly0142s0012' => 'mpo', 'MBI01_g32854_MAGBIO' => 'mbi', 'MBI11_g24427_MAGBIO' => 'mbi', 'MBI11_g47319_MAGBIO' => 'mbi', 'MCO01G433' => 'mco', 'MD00G1187800' => 'mdo', 'MD04G1226500' => 'mdo', 'MD05G1203900' => 'mdo', 'MD10G1191100' => 'mdo', 'MD12G1243500' => 'mdo', 'MD13G1207000' => 'mdo', 'MD13G1207100' => 'mdo', 'MD16G1208600' => 'mdo', 'Medtr1g050352' => 'mtr', 'Medtr1g070385' => 'mtr', 'Medtr1g070450' => 'mtr', 'Medtr1g075200' => 'mtr', 'Medtr1g075250' => 'mtr', 'Medtr1g075260' => 'mtr', 'Medtr1g475250' => 'mtr', 'Medtr4g075450' => 'mtr', 'Medtr7g096300' => 'mtr', 'Medtr8g105110' => 'mtr', 'MELO3C006470.2' => 'cme', 'MELO3C006471.2' => 'cme', 'MELO3C020772.2' => 'cme', 'MELO3C026780.2' => 'cme', 'MELO3C026781.2' => 'cme', 'Migut.D00390' => 'egut', 'Migut.G00435' => 'egut', 'Migut.G00436' => 'egut', 'Migut.G00718' => 'egut', 'MSTRG.21891' => 'ama', 'MSTRG.26910' => 'ama', 'MSTRG.4099' => 'ama', 'MSTRG.9925' => 'ama', 'Nitab4.5_0000165g0010' => 'nta', 'Nitab4.5_0000209g0180' => 'nta', 'Nitab4.5_0000244g0440' => 'nta', 'Nitab4.5_0000525g0220' => 'nta', 'Nitab4.5_0001597g0020' => 'nta', 'Nitab4.5_0001878g0040' => 'nta', 'Nitab4.5_0001878g0060' => 'nta', 'Nitab4.5_0002838g0100' => 'nta', 'Nitab4.5_0002838g0120' => 'nta', 'Nitab4.5_0004798g0030' => 'nta', 'Nitab4.5_0005420g0010' => 'nta', 'Nitab4.5_0005507g0010' => 'nta', 'Nitab4.5_0005574g0020' => 'nta', 'Nitab4.5_0005838g0010' => 'nta', 'Nitab4.5_0010580g0020' => 'nta', 'Nn1g02599' => 'nnu', 'Nn1g02608' => 'nnu', 'Nn3g17742' => 'nnu', 'Nn3g19534' => 'nnu', 'Nn3g19535' => 'nnu', 'Oeu008790.1' => 'oeu', 'Oeu008792.1' => 'oeu', 'Oeu032590.1' => 'oeu', 'Oeu035349.1' => 'oeu', 'Oeu049791.1' => 'oeu', 'Os01g0774500' => 'osa', 'Os03g0628800' => 'osa', 'Os03g0798600' => 'osa', 'Os05g0508800' => 'osa', 'Peaxi162Scf00036g02018' => 'pax', 'Peaxi162Scf00578g00032' => 'pax', 'Peaxi162Scf00578g00317' => 'pax', 'Peaxi162Scf00785g00114' => 'pax', 'Peaxi162Scf00813g00119' => 'pax', 'Peaxi162Scf00906g00227' => 'pax', 'PGR004G0875' => 'pgr', 'PGR004G2424' => 'pgr', 'PGR031G1239' => 'pgr', 'PGR031G2474' => 'pgr', 'PGR044G0423' => 'pgr', 'PGSC0003DMG400001128' => 'stu', 'PGSC0003DMG400007336' => 'stu', 'PGSC0003DMG400016318' => 'stu', 'PGSC0003DMG400016319' => 'stu', 'PGSC0003DMG400018074' => 'stu', 'Phvul.001G157700' => 'pvu', 'Phvul.002G148550' => 'pvu', 'Phvul.002G320200' => 'pvu', 'Phvul.003G089200' => 'pvu', 'Phvul.007G126000' => 'pvu', 'Phvul.007G126100' => 'pvu', 'Phvul.007G178000' => 'pvu', 'Phvul.007G178200' => 'pvu', 'Potri.002G043000' => 'ptr', 'Potri.002G043200' => 'ptr', 'Potri.003G123750' => 'ptr', 'Potri.005G055401' => 'ptr', 'Potri.005G219700' => 'ptr', 'Potri.005G220000' => 'ptr', 'Potri.008G161901' => 'ptr', 'Potri.008G162000' => 'ptr', 'Potri.008G162400' => 'ptr', 'Potri.010G076900' => 'ptr', 'Pp3c12_9180' => 'ppa', 'Pp3c13_19770' => 'ppa', 'Pp3c14_22950' => 'ppa', 'Pp3c16_12160' => 'ppa', 'Pp3c27_7820' => 'ppa', 'Pp3c2_3490' => 'ppa', 'Pp3c3_23700' => 'ppa', 'Pp3c3_36520' => 'ppa', 'Pp3c4_15250' => 'ppa', 'PRCOL_00007002' => 'pco', 'Prupe.1G030600' => 'ppe', 'Prupe.1G030700' => 'ppe', 'Prupe.6G345200' => 'ppe', 'Prupe.8G230300' => 'ppe', 'Prupe.8G230500' => 'ppe', 'Psat3g059600' => 'psa', 'Psat5g200920' => 'psa', 'Psat6g056440' => 'psa', 'Psat6g057360' => 'psa', 'Psat6g134120' => 'psa', 'Psat6g134160' => 'psa', 'Psat7g008640' => 'psa', 'Psat7g185240' => 'psa', 'PSO017G1330' => 'pso', 'PSO063G6097' => 'pso', 'PSO170G0835' => 'pso', 'PSO170G2499' => 'pso', 'PSO210G5058' => 'pso', 'PSO210G6154' => 'pso', 'PSO585G0031' => 'pso', 'PSO832G0264' => 'pso', 'PSO832G4288' => 'pso', 'QL03p027355' => 'qlo', 'QL03p027430' => 'qlo', 'QL04p081380' => 'qlo', 'QL06p015642' => 'qlo', 'QL06p015650' => 'qlo', 'QL06p015686' => 'qlo', 'QL12p042927' => 'qlo', 'QL93p1863_0035' => 'qlo', 'RcHm_v2.0_Chr3g0450581' => 'rch', 'RcHm_v2.0_Chr4g0390371' => 'rch', 'RcHm_v2.0_Chr4g0390381' => 'rch', 'RcHm_v2.0_Chr4g0390491' => 'rch', 'RcHm_v2.0_Chr4g0390501' => 'rch', 'RcHm_v2.0_Chr6g0289231' => 'rch', 'Rhsim04G0190400' => 'rsi', 'Rhsim04G0190500' => 'rsi', 'Rhsim04G0190600' => 'rsi', 'Rhsim13G0031400' => 'rsi', 'Rhsim13G0165600' => 'rsi', 'RhsimUnG0114600' => 'rsi', 'RhsimUnG0114700' => 'rsi', 'Sabra02G0034800' => 'sbr', 'Sabra02G0035100' => 'sbr', 'Sabra05G0168600' => 'sbr', 'Sabra05G0168800' => 'sbr', 'Sabra08G0123700' => 'sbr', 'Sabra10G0031900' => 'sbr', 'Sabra13G0039000' => 'sbr', 'SalBow2G0782' => 'sbo', 'SalBow2G1403' => 'sbo', 'SalBow4G0074' => 'sbo', 'SalBow4G2635' => 'sbo', 'SalBow5G3010' => 'sbo', 'Sc05g0000870' => 'sci', 'Sc05g0000890' => 'sci', 'Sc13g0005000' => 'sci', 'Sc13g0005030' => 'sci', 'Sc19g0003790' => 'sci', 'Sc19g0003800' => 'sci', 'Sed0003467' => 'sed', 'Sed0009355' => 'sed', 'Sed0009894' => 'sed', 'Sed0011972' => 'sed', 'Sed0021483' => 'sed', 'Sed0021750' => 'sed', 'Sed0026279' => 'sed', 'SEGI_05312' => 'sgi', 'SEGI_10112' => 'sgi', 'SEGI_15835' => 'sgi', 'SEGI_30386' => 'sgi', 'SEGI_34122' => 'sgi', 'SEGI_35063' => 'sgi', 'SGA_v2.0_scaffold101G29794' => 'sas', 'SGA_v2.0_scaffold1G00573' => 'sas', 'SGA_v2.0_scaffold79G25637' => 'sas', 'SGA_v2.0_scaffold88G27283' => 'sas', 'SGA_v2.0_scaffold88G27285' => 'sas', 'SGA_v2.0_scaffold88G27331' => 'sas', 'SHI09937' => 'shi', 'SMO119G0302' => 'smo', 'SMO137G0231' => 'smo', 'SMO367G1151' => 'smo', 'Solyc02g082000.3' => 'sly', 'Solyc06g031670.3' => 'sly', 'Solyc06g053810.3' => 'sly', 'Solyc07g025457.1' => 'sly', 'Solyc08g059740.1' => 'sly', 'Solyc08g059750.3' => 'sly', 'Solyc09g083370.3' => 'sly', 'Solyc12g038950.3' => 'sly', 'Sopen02g026630' => 'spe', 'Sopen06g018930' => 'spe', 'Sopen06g018940' => 'spe', 'Sopen08g009460' => 'spe', 'Sopen09g032290' => 'spe', 'Sp1g03080' => 'spa', 'Sp1g03090' => 'spa', 'Sp1g05480' => 'spa', 'Sp2g07860' => 'spa', 'Sp2g08430' => 'spa', 'Sp2g08440' => 'spa', 'Sp2g26200' => 'spa', 'Sp4g13170' => 'spa', 'Sp6g33840' => 'spa', 'SpUn1204_0010' => 'spa', 'TAR365G0908' => 'tar', 'TAR381G1270' => 'tar', 'TAR381G1651' => 'tar', 'TAR625G1131' => 'tar', 'TAR633G0962' => 'tar', 'TAR633G1729' => 'tar', 'TAR633G1864' => 'tar', 'TAR636G0221' => 'tar', 'TAR636G0314' => 'tar', 'TAR636G3202' => 'tar', 'THA.LOC104800805' => 'tha', 'THA.LOC104801096' => 'tha', 'THA.LOC104801555' => 'tha', 'THA.LOC104808491' => 'tha', 'THA.LOC104808595' => 'tha', 'THA.LOC104815985' => 'tha', 'THA.LOC104822250' => 'tha', 'THA.LOC104826071' => 'tha', 'Thecc.01G265200' => 'tca', 'Thecc.01G265300' => 'tca', 'Thecc.01G265700' => 'tca', 'Thecc.03G109100' => 'tca', 'Thecc.04G245900' => 'tca', 'Thecc.04G246000' => 'tca', 'Thhalv10003334m.g' => 'esa', 'Thhalv10005508m.g' => 'esa', 'Thhalv10005643m.g' => 'esa', 'Thhalv10007316m.g' => 'esa', 'Thhalv10009006m.g' => 'esa', 'Thhalv10009309m.g' => 'esa', 'Thhalv10014917m.g' => 'esa', 'Thhalv10014919m.g' => 'esa', 'Thhalv10015393m.g' => 'esa', 'Thhalv10016515m.g' => 'esa', 'Thhalv10029242m.g' => 'esa', 'TPR.G16654' => 'tpr', 'TPR.G20589' => 'tpr', 'TPR.G23029' => 'tpr', 'TPR.G27731' => 'tpr', 'TPR.G28889' => 'tpr', 'TPR.G28899' => 'tpr', 'TPR.G30846' => 'tpr', 'TPR.G5452' => 'tpr', 'TPR.G5713' => 'tpr', 'TPR.G9046' => 'tpr', 'TPR.G9061' => 'tpr', 'TWI09G1075' => 'twi', 'TWI12G0806' => 'twi', 'TWI18G0108' => 'twi', 'TWI53G1361' => 'twi', 'TWI73G0185' => 'twi', 'TWI73G0427' => 'twi', 'unitig_37.g12001' => 'ugi', 'unitig_747.g21660' => 'ugi', 'unitig_748.g7232' => 'ugi', 'unitig_748.g7315' => 'ugi', 'unitig_85.g27262' => 'ugi', 'unitig_92.g28220' => 'ugi', 'vmacro02632' => 'vma', 'vmacro08410' => 'vma', 'vmacro08411' => 'vma', 'vmacro15407' => 'vma', 'VMungo0251G3619' => 'vmu', 'VMungo0720G1204' => 'vmu', 'VMungo0720G1918' => 'vmu', 'VMungo0720G2387' => 'vmu', 'VMungo0720G2961' => 'vmu', 'VMungo1215G2154' => 'vmu', 'VMungo1383G2411' => 'vmu', 'Zm00001eb051130' => 'zma', 'Zm00001eb116830' => 'zma', 'Zm00001eb116850' => 'zma', 'Zm00001eb151740' => 'zma', 'Zm00001eb292360' => 'zma', 'Zm00001eb301640' => 'zma' ), 'gf_id' => 'HOM05D000856', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000856' ), 'data_identifier' => 'HOM05D000856', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000856', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p00010' => 'bna', 'A03p04160' => 'bna', 'A03p17160' => 'bna', 'A04p23370' => 'bna', 'A05p14860' => 'bna', 'A08p37020' => 'bna', 'A09p08050' => 'bna', 'A09p66800' => 'bna', 'A09p67940' => 'bna', 'A10p02680' => 'bna', 'A10p05320' => 'bna', 'Aa31LG1G20560' => 'aar', 'Aa31LG1G20610' => 'aar', 'Aa31LG1G7810' => 'aar', 'Aa31LG5G3590' => 'aar', 'Aa31LG5G6140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3819' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4683' => 'aag', 'Actinidia04480' => 'ach', 'Actinidia05466' => 'ach', 'Actinidia08445' => 'ach', 'Actinidia21170' => 'ach', 'Actinidia24812' => 'ach', 'Actinidia24951' => 'ach', 'Actinidia40088' => 'ach', 'Ah.02g111660' => 'amhyb', 'Ah.11g048900' => 'amhyb', 'Ah.11g049910' => 'amhyb', 'AL1G13870' => 'aly', 'AL1G13880' => 'aly', 'AL1G16760' => 'aly', 'AL390U10020' => 'aly', 'AL4G25520' => 'aly', 'AL6G19890' => 'aly', 'AL6G19900' => 'aly', 'AL6G19910' => 'aly', 'AL8G40100' => 'aly', 'Aqoxy2G03562' => 'aox', 'Aqoxy5G00316' => 'aox', 'Aqoxy5G00926' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1628KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1H403S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2FU6SJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.882I6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8YRY2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YN1SN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AF70II' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZA8L1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F916KL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHRD8H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KTZ8QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S22EMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8M29T' => 'arhy', 'AT1G04270' => 'ath', 'AT1G04280' => 'ath', 'AT1G06750' => 'ath', 'AT1G33850' => 'ath', 'AT2G30630' => 'ath', 'AT5G09490' => 'ath', 'AT5G09500' => 'ath', 'AT5G09510' => 'ath', 'AT5G43640' => 'ath', 'AT5G63070' => 'ath', 'ATR0605G315' => 'atr', 'Atru.chr11.175' => 'acertr', 'Atru.chr11.653' => 'acertr', 'Atru.chr3.1616' => 'acertr', 'Atru.chr4.2230' => 'acertr', 'Atru.chr4.2232' => 'acertr', 'Atru.chr5.1598' => 'acertr', 'Atru.chr5.1600' => 'acertr', 'Atru.chr5.2188' => 'acertr', 'AUR62008326' => 'cqu', 'AUR62011922' => 'cqu', 'AUR62011924' => 'cqu', 'AUR62021771' => 'cqu', 'AUR62032237' => 'cqu', 'AUR62032240' => 'cqu', 'BcaB01g05572' => 'bca', 'BcaB02g10337' => 'bca', 'BcaB04g19944' => 'bca', 'BcaB05g21548' => 'bca', 'BcaB05g21549' => 'bca', 'BcaB05g23227' => 'bca', 'BcaB06g26256' => 'bca', 'BcaB06g26257' => 'bca', 'BcaB06g28379' => 'bca', 'BcaC02g11159' => 'bca', 'BcaC03g13258' => 'bca', 'BcaC03g13259' => 'bca', 'BcaC05g24456' => 'bca', 'BcaC05g24457' => 'bca', 'BcaC07g36922' => 'bca', 'BcaC07g36923' => 'bca', 'BcaC07g42050' => 'bca', 'BcaC07g42176' => 'bca', 'BcaC07g42195' => 'bca', 'BcaC07g42196' => 'bca', 'BcaNung06674' => 'bca', 'BolC2t06351H' => 'bol', 'BolC2t06352H' => 'bol', 'BolC3t12993H' => 'bol', 'BolC4t23525H' => 'bol', 'BolC4t27475H' => 'bol', 'BolC5t29025H' => 'bol', 'BolC5t29026H' => 'bol', 'BolC8t46898H' => 'bol', 'BolC8t46899H' => 'bol', 'BolC8t52630H' => 'bol', 'BolC8t52765H' => 'bol', 'BolC9t53824H' => 'bol', 'BraA03t09760Z' => 'bra', 'BraA03t10990Z' => 'bra', 'BraA05t20413Z' => 'bra', 'BraA08t35602Z' => 'bra', 'BraA09t36458Z' => 'bra', 'BraA09t42018Z' => 'bra', 'BraA09t42129Z' => 'bra', 'BraA10t42536Z' => 'bra', 'BraA10t42537Z' => 'bra', 'C01p10690' => 'bna', 'C02p03890' => 'bna', 'C02p03900' => 'bna', 'C03p04620' => 'bna', 'C04p19870' => 'bna', 'C04p59670' => 'bna', 'C05p02460' => 'bna', 'C05p02470' => 'bna', 'C08p00980' => 'bna', 'C08p00990' => 'bna', 'C08p51030' => 'bna', 'C08p52360' => 'bna', 'C09p09120' => 'bna', 'CAN.G19.15' => 'can', 'CAN.G251.10' => 'can', 'CAN.G251.9' => 'can', 'CAN.G398.24' => 'can', 'CAN.G410.32' => 'can', 'CAN.G881.2' => 'can', 'CANSAT01G3025' => 'cansat', 'CANSAT78G1211' => 'cansat', 'CANSAT78G1218' => 'cansat', 'CANSAT78G1521' => 'cansat', 'CANSAT78G1670' => 'cansat', 'CARHR003600' => 'chi', 'CARHR003610' => 'chi', 'CARHR006290' => 'chi', 'CARHR006430' => 'chi', 'CARHR124110' => 'chi', 'CARHR203870' => 'chi', 'CARHR203880' => 'chi', 'CARHR203890' => 'chi', 'CARHR276880' => 'chi', 'Carub.0001s0346' => 'cru', 'Carub.0001s0347' => 'cru', 'Carub.0001s0607' => 'cru', 'Carub.0003s2768' => 'cru', 'Carub.0003s2769' => 'cru', 'Carub.0004s1178' => 'cru', 'Carub.0006s0806' => 'cru', 'Carub.0006s0807' => 'cru', 'Carub.0006s0808' => 'cru', 'Carub.0008s0501' => 'cru', 'Carub.0008s2379' => 'cru', 'Ca_08655_v3' => 'car', 'Ca_08922_v3' => 'car', 'Ca_08923_v3' => 'car', 'Ca_09119_v3' => 'car', 'Ca_09703_v3' => 'car', 'Ca_09705_v3' => 'car', 'Ca_09835_v3' => 'car', 'Ca_26403_v3' => 'car', 'Ca_30719_v3' => 'car', 'CBR_g17958' => 'cbr', 'CBR_g40516' => 'cbr', 'Cc00_g05350' => 'ccan', 'Cc01_g18690' => 'ccan', 'Cc03_g04830' => 'ccan', 'Cc03_g04850' => 'ccan', 'CDE02G4469' => 'cde', 'CDE06G0883' => 'cde', 'CDE06G1295' => 'cde', 'CDE06G1390' => 'cde', 'CDE07G0584' => 'cde', 'CDE07G1084' => 'cde', 'CDE08G1259' => 'cde', 'Cfa002341' => 'cfa', 'Cfa024337' => 'cfa', 'Ciclev10004749m.g' => 'ccl', 'Ciclev10006127m.g' => 'ccl', 'Ciclev10019720m.g' => 'ccl', 'Ciclev10022652m.g' => 'ccl', 'CiPaw.01G190400' => 'cil', 'CiPaw.01G190500' => 'cil', 'CiPaw.02G116400' => 'cil', 'CiPaw.02G116500' => 'cil', 'CiPaw.04G183000' => 'cil', 'CiPaw.04G183300' => 'cil', 'ClCG05G004610' => 'cla', 'ClCG05G004620' => 'cla', 'ClCG06G006730' => 'cla', 'ClCG06G006740' => 'cla', 'ClCG11G003690' => 'cla', 'COL.COLO4_08276' => 'col', 'COL.COLO4_08277' => 'col', 'COL.COLO4_15787' => 'col', 'COL.COLO4_15789' => 'col', 'Cpa.g.c44815' => 'cpa', 'Cpa.g.sc52.144' => 'cpa', 'Cpa.g.sc58.46' => 'cpa', 'Cpa.g.sc58.47' => 'cpa', 'Cre08.g360900' => 'cre', 'CsaV3_2G013030' => 'csa', 'CsaV3_2G013050' => 'csa', 'CsaV3_2G015620' => 'csa', 'CsaV3_3G012590' => 'csa', 'CsaV3_3G012600' => 'csa', 'CSS0001641' => 'camsi', 'CSS0008310' => 'camsi', 'CSS0013011' => 'camsi', 'CSS0017147' => 'camsi', 'CSS0022970' => 'camsi', 'CSS0025655' => 'camsi', 'CSS0028665' => 'camsi', 'CSS0029117' => 'camsi', 'CSS0032024' => 'camsi', 'CSS0039681' => 'camsi', 'CSS0046516' => 'camsi', 'CSS0050307' => 'camsi', 'DCAR_005871' => 'dca', 'DCAR_007342' => 'dca', 'DCAR_024228' => 'dca', 'DCAR_027277' => 'dca', 'DCAR_030718' => 'dca', 'Dinv20287' => 'din', 'Dinv22461' => 'din', 'Dinv22464' => 'din', 'Dinv29912' => 'din', 'Dinv29913' => 'din', 'Dinv34580' => 'din', 'Dinv34582' => 'din', 'Dinv44632' => 'din', 'Duzib052G0266' => 'dzi', 'Duzib133G0907' => 'dzi', 'Duzib133G1034' => 'dzi', 'Duzib138G0207' => 'dzi', 'Duzib138G0491' => 'dzi', 'Duzib151G0812' => 'dzi', 'Duzib151G1166' => 'dzi', 'Duzib168G0192' => 'dzi', 'Duzib211G0077' => 'dzi', 'Duzib212G0429' => 'dzi', 'Duzib212G0472' => 'dzi', 'ECA233G2617' => 'eca', 'ECA236G4188' => 'eca', 'ECA240G0936' => 'eca', 'ECA240G1129' => 'eca', 'ECA247G0623' => 'eca', 'EL10Ac5g10451' => 'bvu', 'EL10Ac5g10453' => 'bvu', 'EL10Ac5g10894' => 'bvu', 'Eucgr.H00192' => 'egr', 'Eucgr.H00193' => 'egr', 'Eucgr.H00194' => 'egr', 'Eucgr.J01562' => 'egr', 'Eucgr.K03301' => 'egr', 'FAN02G0632' => 'fan', 'FAN05G5378' => 'fan', 'FAN09G3247' => 'fan', 'FAN12G0435' => 'fan', 'FAN12G2426' => 'fan', 'FAN14G1707' => 'fan', 'FAN14G4725' => 'fan', 'FAN15G2071' => 'fan', 'FAN17G3065' => 'fan', 'FAN19G1376' => 'fan', 'FAN20G0354' => 'fan', 'FAN20G2429' => 'fan', 'FAN20G2658' => 'fan', 'FAN24G2343' => 'fan', 'FAN27G2362' => 'fan', 'FAN28G1765' => 'fan', 'FvH4_1g16020' => 'fve', 'FvH4_2g04890' => 'fve', 'FvH4_2g22270' => 'fve', 'FvH4_4g02630' => 'fve', 'FvH4_4g02640' => 'fve', 'FvH4_6g02650' => 'fve', 'Glyma.02G140600' => 'gma', 'Glyma.03G159900' => 'gma', 'Glyma.05G234800' => 'gma', 'Glyma.07G269600' => 'gma', 'Glyma.08G042300' => 'gma', 'Glyma.10G033500' => 'gma', 'Glyma.10G185200' => 'gma', 'Glyma.17G004300' => 'gma', 'Glyma.19G161900' => 'gma', 'Glyma.20G205100' => 'gma', 'Glyma.20G205200' => 'gma', 'Gohir.A01G139101' => 'ghi', 'Gohir.A02G035600' => 'ghi', 'Gohir.A02G117901' => 'ghi', 'Gohir.A07G210100' => 'ghi', 'Gohir.A07G210200' => 'ghi', 'Gohir.A08G061100' => 'ghi', 'Gohir.A09G223000' => 'ghi', 'Gohir.A09G223100' => 'ghi', 'Gohir.A10G113900' => 'ghi', 'Gohir.A10G114000' => 'ghi', 'Gohir.D02G042300' => 'ghi', 'Gohir.D07G216100' => 'ghi', 'Gohir.D07G216200' => 'ghi', 'Gohir.D08G070400' => 'ghi', 'Gohir.D09G225000' => 'ghi', 'Gohir.D09G225100' => 'ghi', 'Gohir.D10G152300' => 'ghi', 'Gohir.D10G153200' => 'ghi', 'Gohir.D11G133701' => 'ghi', 'Gorai.004G074100' => 'gra', 'Gorai.005G046800' => 'gra', 'Gorai.006G246500' => 'gra', 'Gorai.006G246600' => 'gra', 'Gorai.007G142900' => 'gra', 'Gorai.011G171000' => 'gra', 'Gorai.011G171100' => 'gra', 'Gorai.013G104300' => 'gra', 'Gorai.013G104400' => 'gra', 'GSVIVG01000754001' => 'vvi', 'GSVIVG01000756001' => 'vvi', 'GSVIVG01010903001' => 'vvi', 'GSVIVG01017623001' => 'vvi', 'GSVIVG01018113001' => 'vvi', 'GSVIVG01018116001' => 'vvi', 'GSVIVG01018118001' => 'vvi', 'HanXRQChr03g0076211' => 'han', 'HanXRQChr03g0092431' => 'han', 'HanXRQChr03g0092441' => 'han', 'HanXRQChr03g0092591' => 'han', 'HanXRQChr03g0092671' => 'han', 'HanXRQChr03g0092681' => 'han', 'HanXRQChr03g0092691' => 'han', 'HanXRQChr03g0092701' => 'han', 'HanXRQChr03g0092721' => 'han', 'HanXRQChr03g0092731' => 'han', 'HanXRQChr04g0113681' => 'han', 'HanXRQChr10g0281371' => 'han', 'HanXRQChr11g0337141' => 'han', 'HanXRQChr13g0424521' => 'han', 'HanXRQChr13g0424531' => 'han', 'HanXRQChr13g0424541' => 'han', 'HanXRQChr16g0498221' => 'han', 'Haze_04377' => 'cav', 'Haze_11298' => 'cav', 'Haze_24547' => 'cav', 'Haze_24550' => 'cav', 'Haze_26587' => 'cav', 'Hma1.2p1_0650F.1_g195410' => 'hma', 'Hma1.2p1_0893F.1_g233470' => 'hma', 'HPP92_006508' => 'vpl', 'HPP92_024780' => 'vpl', 'Hund02688' => 'sun', 'Hund09380' => 'sun', 'Hund09381' => 'sun', 'Hund09832' => 'sun', 'Hund09833' => 'sun', 'Hund11351' => 'sun', 'Hund11513' => 'sun', 'Lalb_Chr06g0162591' => 'lal', 'Lalb_Chr06g0162601' => 'lal', 'Lalb_Chr06g0169321' => 'lal', 'Lalb_Chr09g0330951' => 'lal', 'Lalb_Chr16g0387631' => 'lal', 'Lalb_Chr21g0306241' => 'lal', 'Lalb_Chr25g0290051' => 'lal', 'Lalb_Chr25g0290061' => 'lal', 'Lalb_Chr25g0290071' => 'lal', 'Lj1g0003876' => 'lja', 'Lj1P1207T36' => 'lonja', 'Lj2C1156G12' => 'lonja', 'Lj3A793G39' => 'lonja', 'Lj3C580G2' => 'lonja', 'Lj3C780G2' => 'lonja', 'Lj3C780T4' => 'lonja', 'Lj3C793G9' => 'lonja', 'Lj4g0012960' => 'lja', 'Lj5g0021252' => 'lja', 'Lj5g0021484' => 'lja', 'Lj5g0024528' => 'lja', 'Lj6A399T12' => 'lonja', 'Lj6A656G65' => 'lonja', 'Lsat_1_v5_gn_3_125500' => 'lsa', 'Lsat_1_v5_gn_3_125540' => 'lsa', 'Lsat_1_v5_gn_5_72701' => 'lsa', 'Lsat_1_v5_gn_8_91560' => 'lsa', 'Lsat_1_v5_gn_9_9640' => 'lsa', 'Manes.01G200600' => 'mes', 'Manes.01G200700' => 'mes', 'Manes.03G168900' => 'mes', 'Manes.03G169000' => 'mes', 'Manes.05G085801' => 'mes', 'Manes.05G086200' => 'mes', 'Manes.15G036700' => 'mes', 'Manes.15G036900' => 'mes', 'Mapoly0004s0172' => 'mpo', 'Mapoly0023s0001' => 'mpo', 'Mapoly0142s0012' => 'mpo', 'MBI01_g32854_MAGBIO' => 'mbi', 'MBI11_g24427_MAGBIO' => 'mbi', 'MBI11_g47319_MAGBIO' => 'mbi', 'MCO01G433' => 'mco', 'MD00G1187800' => 'mdo', 'MD04G1226500' => 'mdo', 'MD05G1203900' => 'mdo', 'MD10G1191100' => 'mdo', 'MD12G1243500' => 'mdo', 'MD13G1207000' => 'mdo', 'MD13G1207100' => 'mdo', 'MD16G1208600' => 'mdo', 'Medtr1g050352' => 'mtr', 'Medtr1g070385' => 'mtr', 'Medtr1g070450' => 'mtr', 'Medtr1g075200' => 'mtr', 'Medtr1g075250' => 'mtr', 'Medtr1g075260' => 'mtr', 'Medtr1g475250' => 'mtr', 'Medtr4g075450' => 'mtr', 'Medtr7g096300' => 'mtr', 'Medtr8g105110' => 'mtr', 'MELO3C006470.2' => 'cme', 'MELO3C006471.2' => 'cme', 'MELO3C020772.2' => 'cme', 'MELO3C026780.2' => 'cme', 'MELO3C026781.2' => 'cme', 'Migut.D00390' => 'egut', 'Migut.G00435' => 'egut', 'Migut.G00436' => 'egut', 'Migut.G00718' => 'egut', 'MSTRG.21891' => 'ama', 'MSTRG.26910' => 'ama', 'MSTRG.4099' => 'ama', 'MSTRG.9925' => 'ama', 'Nitab4.5_0000165g0010' => 'nta', 'Nitab4.5_0000209g0180' => 'nta', 'Nitab4.5_0000244g0440' => 'nta', 'Nitab4.5_0000525g0220' => 'nta', 'Nitab4.5_0001597g0020' => 'nta', 'Nitab4.5_0001878g0040' => 'nta', 'Nitab4.5_0001878g0060' => 'nta', 'Nitab4.5_0002838g0100' => 'nta', 'Nitab4.5_0002838g0120' => 'nta', 'Nitab4.5_0004798g0030' => 'nta', 'Nitab4.5_0005420g0010' => 'nta', 'Nitab4.5_0005507g0010' => 'nta', 'Nitab4.5_0005574g0020' => 'nta', 'Nitab4.5_0005838g0010' => 'nta', 'Nitab4.5_0010580g0020' => 'nta', 'Nn1g02599' => 'nnu', 'Nn1g02608' => 'nnu', 'Nn3g17742' => 'nnu', 'Nn3g19534' => 'nnu', 'Nn3g19535' => 'nnu', 'Oeu008790.1' => 'oeu', 'Oeu008792.1' => 'oeu', 'Oeu032590.1' => 'oeu', 'Oeu035349.1' => 'oeu', 'Oeu049791.1' => 'oeu', 'Os01g0774500' => 'osa', 'Os03g0628800' => 'osa', 'Os03g0798600' => 'osa', 'Os05g0508800' => 'osa', 'Peaxi162Scf00036g02018' => 'pax', 'Peaxi162Scf00578g00032' => 'pax', 'Peaxi162Scf00578g00317' => 'pax', 'Peaxi162Scf00785g00114' => 'pax', 'Peaxi162Scf00813g00119' => 'pax', 'Peaxi162Scf00906g00227' => 'pax', 'PGR004G0875' => 'pgr', 'PGR004G2424' => 'pgr', 'PGR031G1239' => 'pgr', 'PGR031G2474' => 'pgr', 'PGR044G0423' => 'pgr', 'PGSC0003DMG400001128' => 'stu', 'PGSC0003DMG400007336' => 'stu', 'PGSC0003DMG400016318' => 'stu', 'PGSC0003DMG400016319' => 'stu', 'PGSC0003DMG400018074' => 'stu', 'Phvul.001G157700' => 'pvu', 'Phvul.002G148550' => 'pvu', 'Phvul.002G320200' => 'pvu', 'Phvul.003G089200' => 'pvu', 'Phvul.007G126000' => 'pvu', 'Phvul.007G126100' => 'pvu', 'Phvul.007G178000' => 'pvu', 'Phvul.007G178200' => 'pvu', 'Potri.002G043000' => 'ptr', 'Potri.002G043200' => 'ptr', 'Potri.003G123750' => 'ptr', 'Potri.005G055401' => 'ptr', 'Potri.005G219700' => 'ptr', 'Potri.005G220000' => 'ptr', 'Potri.008G161901' => 'ptr', 'Potri.008G162000' => 'ptr', 'Potri.008G162400' => 'ptr', 'Potri.010G076900' => 'ptr', 'Pp3c12_9180' => 'ppa', 'Pp3c13_19770' => 'ppa', 'Pp3c14_22950' => 'ppa', 'Pp3c16_12160' => 'ppa', 'Pp3c27_7820' => 'ppa', 'Pp3c2_3490' => 'ppa', 'Pp3c3_23700' => 'ppa', 'Pp3c3_36520' => 'ppa', 'Pp3c4_15250' => 'ppa', 'PRCOL_00007002' => 'pco', 'Prupe.1G030600' => 'ppe', 'Prupe.1G030700' => 'ppe', 'Prupe.6G345200' => 'ppe', 'Prupe.8G230300' => 'ppe', 'Prupe.8G230500' => 'ppe', 'Psat3g059600' => 'psa', 'Psat5g200920' => 'psa', 'Psat6g056440' => 'psa', 'Psat6g057360' => 'psa', 'Psat6g134120' => 'psa', 'Psat6g134160' => 'psa', 'Psat7g008640' => 'psa', 'Psat7g185240' => 'psa', 'PSO017G1330' => 'pso', 'PSO063G6097' => 'pso', 'PSO170G0835' => 'pso', 'PSO170G2499' => 'pso', 'PSO210G5058' => 'pso', 'PSO210G6154' => 'pso', 'PSO585G0031' => 'pso', 'PSO832G0264' => 'pso', 'PSO832G4288' => 'pso', 'QL03p027355' => 'qlo', 'QL03p027430' => 'qlo', 'QL04p081380' => 'qlo', 'QL06p015642' => 'qlo', 'QL06p015650' => 'qlo', 'QL06p015686' => 'qlo', 'QL12p042927' => 'qlo', 'QL93p1863_0035' => 'qlo', 'RcHm_v2.0_Chr3g0450581' => 'rch', 'RcHm_v2.0_Chr4g0390371' => 'rch', 'RcHm_v2.0_Chr4g0390381' => 'rch', 'RcHm_v2.0_Chr4g0390491' => 'rch', 'RcHm_v2.0_Chr4g0390501' => 'rch', 'RcHm_v2.0_Chr6g0289231' => 'rch', 'Rhsim04G0190400' => 'rsi', 'Rhsim04G0190500' => 'rsi', 'Rhsim04G0190600' => 'rsi', 'Rhsim13G0031400' => 'rsi', 'Rhsim13G0165600' => 'rsi', 'RhsimUnG0114600' => 'rsi', 'RhsimUnG0114700' => 'rsi', 'Sabra02G0034800' => 'sbr', 'Sabra02G0035100' => 'sbr', 'Sabra05G0168600' => 'sbr', 'Sabra05G0168800' => 'sbr', 'Sabra08G0123700' => 'sbr', 'Sabra10G0031900' => 'sbr', 'Sabra13G0039000' => 'sbr', 'SalBow2G0782' => 'sbo', 'SalBow2G1403' => 'sbo', 'SalBow4G0074' => 'sbo', 'SalBow4G2635' => 'sbo', 'SalBow5G3010' => 'sbo', 'Sc05g0000870' => 'sci', 'Sc05g0000890' => 'sci', 'Sc13g0005000' => 'sci', 'Sc13g0005030' => 'sci', 'Sc19g0003790' => 'sci', 'Sc19g0003800' => 'sci', 'Sed0003467' => 'sed', 'Sed0009355' => 'sed', 'Sed0009894' => 'sed', 'Sed0011972' => 'sed', 'Sed0021483' => 'sed', 'Sed0021750' => 'sed', 'Sed0026279' => 'sed', 'SEGI_05312' => 'sgi', 'SEGI_10112' => 'sgi', 'SEGI_15835' => 'sgi', 'SEGI_30386' => 'sgi', 'SEGI_34122' => 'sgi', 'SEGI_35063' => 'sgi', 'SGA_v2.0_scaffold101G29794' => 'sas', 'SGA_v2.0_scaffold1G00573' => 'sas', 'SGA_v2.0_scaffold79G25637' => 'sas', 'SGA_v2.0_scaffold88G27283' => 'sas', 'SGA_v2.0_scaffold88G27285' => 'sas', 'SGA_v2.0_scaffold88G27331' => 'sas', 'SHI09937' => 'shi', 'SMO119G0302' => 'smo', 'SMO137G0231' => 'smo', 'SMO367G1151' => 'smo', 'Solyc02g082000.3' => 'sly', 'Solyc06g031670.3' => 'sly', 'Solyc06g053810.3' => 'sly', 'Solyc07g025457.1' => 'sly', 'Solyc08g059740.1' => 'sly', 'Solyc08g059750.3' => 'sly', 'Solyc09g083370.3' => 'sly', 'Solyc12g038950.3' => 'sly', 'Sopen02g026630' => 'spe', 'Sopen06g018930' => 'spe', 'Sopen06g018940' => 'spe', 'Sopen08g009460' => 'spe', 'Sopen09g032290' => 'spe', 'Sp1g03080' => 'spa', 'Sp1g03090' => 'spa', 'Sp1g05480' => 'spa', 'Sp2g07860' => 'spa', 'Sp2g08430' => 'spa', 'Sp2g08440' => 'spa', 'Sp2g26200' => 'spa', 'Sp4g13170' => 'spa', 'Sp6g33840' => 'spa', 'SpUn1204_0010' => 'spa', 'TAR365G0908' => 'tar', 'TAR381G1270' => 'tar', 'TAR381G1651' => 'tar', 'TAR625G1131' => 'tar', 'TAR633G0962' => 'tar', 'TAR633G1729' => 'tar', 'TAR633G1864' => 'tar', 'TAR636G0221' => 'tar', 'TAR636G0314' => 'tar', 'TAR636G3202' => 'tar', 'THA.LOC104800805' => 'tha', 'THA.LOC104801096' => 'tha', 'THA.LOC104801555' => 'tha', 'THA.LOC104808491' => 'tha', 'THA.LOC104808595' => 'tha', 'THA.LOC104815985' => 'tha', 'THA.LOC104822250' => 'tha', 'THA.LOC104826071' => 'tha', 'Thecc.01G265200' => 'tca', 'Thecc.01G265300' => 'tca', 'Thecc.01G265700' => 'tca', 'Thecc.03G109100' => 'tca', 'Thecc.04G245900' => 'tca', 'Thecc.04G246000' => 'tca', 'Thhalv10003334m.g' => 'esa', 'Thhalv10005508m.g' => 'esa', 'Thhalv10005643m.g' => 'esa', 'Thhalv10007316m.g' => 'esa', 'Thhalv10009006m.g' => 'esa', 'Thhalv10009309m.g' => 'esa', 'Thhalv10014917m.g' => 'esa', 'Thhalv10014919m.g' => 'esa', 'Thhalv10015393m.g' => 'esa', 'Thhalv10016515m.g' => 'esa', 'Thhalv10029242m.g' => 'esa', 'TPR.G16654' => 'tpr', 'TPR.G20589' => 'tpr', 'TPR.G23029' => 'tpr', 'TPR.G27731' => 'tpr', 'TPR.G28889' => 'tpr', 'TPR.G28899' => 'tpr', 'TPR.G30846' => 'tpr', 'TPR.G5452' => 'tpr', 'TPR.G5713' => 'tpr', 'TPR.G9046' => 'tpr', 'TPR.G9061' => 'tpr', 'TWI09G1075' => 'twi', 'TWI12G0806' => 'twi', 'TWI18G0108' => 'twi', 'TWI53G1361' => 'twi', 'TWI73G0185' => 'twi', 'TWI73G0427' => 'twi', 'unitig_37.g12001' => 'ugi', 'unitig_747.g21660' => 'ugi', 'unitig_748.g7232' => 'ugi', 'unitig_748.g7315' => 'ugi', 'unitig_85.g27262' => 'ugi', 'unitig_92.g28220' => 'ugi', 'vmacro02632' => 'vma', 'vmacro08410' => 'vma', 'vmacro08411' => 'vma', 'vmacro15407' => 'vma', 'VMungo0251G3619' => 'vmu', 'VMungo0720G1204' => 'vmu', 'VMungo0720G1918' => 'vmu', 'VMungo0720G2387' => 'vmu', 'VMungo0720G2961' => 'vmu', 'VMungo1215G2154' => 'vmu', 'VMungo1383G2411' => 'vmu', 'Zm00001eb051130' => 'zma', 'Zm00001eb116830' => 'zma', 'Zm00001eb116850' => 'zma', 'Zm00001eb151740' => 'zma', 'Zm00001eb292360' => 'zma', 'Zm00001eb301640' => 'zma' ) $gf_id = 'HOM05D000856' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000856' ) $data_identifier = 'HOM05D000856' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 13, 'ath' => (int) 10, 'atr' => (int) 1, 'acertr' => (int) 8, 'cqu' => (int) 6, 'bca' => (int) 21, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 11, 'car' => (int) 9, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 8, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 5, 'fan' => (int) 16, 'fve' => (int) 6, 'gma' => (int) 11, 'ghi' => (int) 19, 'gra' => (int) 9, 'vvi' => (int) 7, 'han' => (int) 17, 'cav' => (int) 5, 'hma' => (int) 2, 'vpl' => (int) 2, 'sun' => (int) 7, 'lal' => (int) 9, 'lja' => (int) 5, 'lonja' => (int) 9, 'lsa' => (int) 5, 'mes' => (int) 8, 'mpo' => (int) 3, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 10, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 15, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 9, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 9, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 6, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 5, 'spa' => (int) 10, 'tar' => (int) 10, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 11, 'tpr' => (int) 11, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 4, 'vmu' => (int) 7, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb301640' $species_info = array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ) $local_species = 'bra' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000856', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p00010' => 'bna', 'A03p04160' => 'bna', 'A03p17160' => 'bna', 'A04p23370' => 'bna', 'A05p14860' => 'bna', 'A08p37020' => 'bna', 'A09p08050' => 'bna', 'A09p66800' => 'bna', 'A09p67940' => 'bna', 'A10p02680' => 'bna', 'A10p05320' => 'bna', 'Aa31LG1G20560' => 'aar', 'Aa31LG1G20610' => 'aar', 'Aa31LG1G7810' => 'aar', 'Aa31LG5G3590' => 'aar', 'Aa31LG5G6140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3819' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4683' => 'aag', 'Actinidia04480' => 'ach', 'Actinidia05466' => 'ach', 'Actinidia08445' => 'ach', 'Actinidia21170' => 'ach', 'Actinidia24812' => 'ach', 'Actinidia24951' => 'ach', 'Actinidia40088' => 'ach', 'Ah.02g111660' => 'amhyb', 'Ah.11g048900' => 'amhyb', 'Ah.11g049910' => 'amhyb', 'AL1G13870' => 'aly', 'AL1G13880' => 'aly', 'AL1G16760' => 'aly', 'AL390U10020' => 'aly', 'AL4G25520' => 'aly', 'AL6G19890' => 'aly', 'AL6G19900' => 'aly', 'AL6G19910' => 'aly', 'AL8G40100' => 'aly', 'Aqoxy2G03562' => 'aox', 'Aqoxy5G00316' => 'aox', 'Aqoxy5G00926' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1628KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1H403S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2FU6SJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.882I6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8YRY2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YN1SN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AF70II' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZA8L1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F916KL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHRD8H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KTZ8QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S22EMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8M29T' => 'arhy', 'AT1G04270' => 'ath', 'AT1G04280' => 'ath', 'AT1G06750' => 'ath', 'AT1G33850' => 'ath', 'AT2G30630' => 'ath', 'AT5G09490' => 'ath', 'AT5G09500' => 'ath', 'AT5G09510' => 'ath', 'AT5G43640' => 'ath', 'AT5G63070' => 'ath', 'ATR0605G315' => 'atr', 'Atru.chr11.175' => 'acertr', 'Atru.chr11.653' => 'acertr', 'Atru.chr3.1616' => 'acertr', 'Atru.chr4.2230' => 'acertr', 'Atru.chr4.2232' => 'acertr', 'Atru.chr5.1598' => 'acertr', 'Atru.chr5.1600' => 'acertr', 'Atru.chr5.2188' => 'acertr', 'AUR62008326' => 'cqu', 'AUR62011922' => 'cqu', 'AUR62011924' => 'cqu', 'AUR62021771' => 'cqu', 'AUR62032237' => 'cqu', 'AUR62032240' => 'cqu', 'BcaB01g05572' => 'bca', 'BcaB02g10337' => 'bca', 'BcaB04g19944' => 'bca', 'BcaB05g21548' => 'bca', 'BcaB05g21549' => 'bca', 'BcaB05g23227' => 'bca', 'BcaB06g26256' => 'bca', 'BcaB06g26257' => 'bca', 'BcaB06g28379' => 'bca', 'BcaC02g11159' => 'bca', 'BcaC03g13258' => 'bca', 'BcaC03g13259' => 'bca', 'BcaC05g24456' => 'bca', 'BcaC05g24457' => 'bca', 'BcaC07g36922' => 'bca', 'BcaC07g36923' => 'bca', 'BcaC07g42050' => 'bca', 'BcaC07g42176' => 'bca', 'BcaC07g42195' => 'bca', 'BcaC07g42196' => 'bca', 'BcaNung06674' => 'bca', 'BolC2t06351H' => 'bol', 'BolC2t06352H' => 'bol', 'BolC3t12993H' => 'bol', 'BolC4t23525H' => 'bol', 'BolC4t27475H' => 'bol', 'BolC5t29025H' => 'bol', 'BolC5t29026H' => 'bol', 'BolC8t46898H' => 'bol', 'BolC8t46899H' => 'bol', 'BolC8t52630H' => 'bol', 'BolC8t52765H' => 'bol', 'BolC9t53824H' => 'bol', 'BraA03t09760Z' => 'bra', 'BraA03t10990Z' => 'bra', 'BraA05t20413Z' => 'bra', 'BraA08t35602Z' => 'bra', 'BraA09t36458Z' => 'bra', 'BraA09t42018Z' => 'bra', 'BraA09t42129Z' => 'bra', 'BraA10t42536Z' => 'bra', 'BraA10t42537Z' => 'bra', 'C01p10690' => 'bna', 'C02p03890' => 'bna', 'C02p03900' => 'bna', 'C03p04620' => 'bna', 'C04p19870' => 'bna', 'C04p59670' => 'bna', 'C05p02460' => 'bna', 'C05p02470' => 'bna', 'C08p00980' => 'bna', 'C08p00990' => 'bna', 'C08p51030' => 'bna', 'C08p52360' => 'bna', 'C09p09120' => 'bna', 'CAN.G19.15' => 'can', 'CAN.G251.10' => 'can', 'CAN.G251.9' => 'can', 'CAN.G398.24' => 'can', 'CAN.G410.32' => 'can', 'CAN.G881.2' => 'can', 'CANSAT01G3025' => 'cansat', 'CANSAT78G1211' => 'cansat', 'CANSAT78G1218' => 'cansat', 'CANSAT78G1521' => 'cansat', 'CANSAT78G1670' => 'cansat', 'CARHR003600' => 'chi', 'CARHR003610' => 'chi', 'CARHR006290' => 'chi', 'CARHR006430' => 'chi', 'CARHR124110' => 'chi', 'CARHR203870' => 'chi', 'CARHR203880' => 'chi', 'CARHR203890' => 'chi', 'CARHR276880' => 'chi', 'Carub.0001s0346' => 'cru', 'Carub.0001s0347' => 'cru', 'Carub.0001s0607' => 'cru', 'Carub.0003s2768' => 'cru', 'Carub.0003s2769' => 'cru', 'Carub.0004s1178' => 'cru', 'Carub.0006s0806' => 'cru', 'Carub.0006s0807' => 'cru', 'Carub.0006s0808' => 'cru', 'Carub.0008s0501' => 'cru', 'Carub.0008s2379' => 'cru', 'Ca_08655_v3' => 'car', 'Ca_08922_v3' => 'car', 'Ca_08923_v3' => 'car', 'Ca_09119_v3' => 'car', 'Ca_09703_v3' => 'car', 'Ca_09705_v3' => 'car', 'Ca_09835_v3' => 'car', 'Ca_26403_v3' => 'car', 'Ca_30719_v3' => 'car', 'CBR_g17958' => 'cbr', 'CBR_g40516' => 'cbr', 'Cc00_g05350' => 'ccan', 'Cc01_g18690' => 'ccan', 'Cc03_g04830' => 'ccan', 'Cc03_g04850' => 'ccan', 'CDE02G4469' => 'cde', 'CDE06G0883' => 'cde', 'CDE06G1295' => 'cde', 'CDE06G1390' => 'cde', 'CDE07G0584' => 'cde', 'CDE07G1084' => 'cde', 'CDE08G1259' => 'cde', 'Cfa002341' => 'cfa', 'Cfa024337' => 'cfa', 'Ciclev10004749m.g' => 'ccl', 'Ciclev10006127m.g' => 'ccl', 'Ciclev10019720m.g' => 'ccl', 'Ciclev10022652m.g' => 'ccl', 'CiPaw.01G190400' => 'cil', 'CiPaw.01G190500' => 'cil', 'CiPaw.02G116400' => 'cil', 'CiPaw.02G116500' => 'cil', 'CiPaw.04G183000' => 'cil', 'CiPaw.04G183300' => 'cil', 'ClCG05G004610' => 'cla', 'ClCG05G004620' => 'cla', 'ClCG06G006730' => 'cla', 'ClCG06G006740' => 'cla', 'ClCG11G003690' => 'cla', 'COL.COLO4_08276' => 'col', 'COL.COLO4_08277' => 'col', 'COL.COLO4_15787' => 'col', 'COL.COLO4_15789' => 'col', 'Cpa.g.c44815' => 'cpa', 'Cpa.g.sc52.144' => 'cpa', 'Cpa.g.sc58.46' => 'cpa', 'Cpa.g.sc58.47' => 'cpa', 'Cre08.g360900' => 'cre', 'CsaV3_2G013030' => 'csa', 'CsaV3_2G013050' => 'csa', 'CsaV3_2G015620' => 'csa', 'CsaV3_3G012590' => 'csa', 'CsaV3_3G012600' => 'csa', 'CSS0001641' => 'camsi', 'CSS0008310' => 'camsi', 'CSS0013011' => 'camsi', 'CSS0017147' => 'camsi', 'CSS0022970' => 'camsi', 'CSS0025655' => 'camsi', 'CSS0028665' => 'camsi', 'CSS0029117' => 'camsi', 'CSS0032024' => 'camsi', 'CSS0039681' => 'camsi', 'CSS0046516' => 'camsi', 'CSS0050307' => 'camsi', 'DCAR_005871' => 'dca', 'DCAR_007342' => 'dca', 'DCAR_024228' => 'dca', 'DCAR_027277' => 'dca', 'DCAR_030718' => 'dca', 'Dinv20287' => 'din', 'Dinv22461' => 'din', 'Dinv22464' => 'din', 'Dinv29912' => 'din', 'Dinv29913' => 'din', 'Dinv34580' => 'din', 'Dinv34582' => 'din', 'Dinv44632' => 'din', 'Duzib052G0266' => 'dzi', 'Duzib133G0907' => 'dzi', 'Duzib133G1034' => 'dzi', 'Duzib138G0207' => 'dzi', 'Duzib138G0491' => 'dzi', 'Duzib151G0812' => 'dzi', 'Duzib151G1166' => 'dzi', 'Duzib168G0192' => 'dzi', 'Duzib211G0077' => 'dzi', 'Duzib212G0429' => 'dzi', 'Duzib212G0472' => 'dzi', 'ECA233G2617' => 'eca', 'ECA236G4188' => 'eca', 'ECA240G0936' => 'eca', 'ECA240G1129' => 'eca', 'ECA247G0623' => 'eca', 'EL10Ac5g10451' => 'bvu', 'EL10Ac5g10453' => 'bvu', 'EL10Ac5g10894' => 'bvu', 'Eucgr.H00192' => 'egr', 'Eucgr.H00193' => 'egr', 'Eucgr.H00194' => 'egr', 'Eucgr.J01562' => 'egr', 'Eucgr.K03301' => 'egr', 'FAN02G0632' => 'fan', 'FAN05G5378' => 'fan', 'FAN09G3247' => 'fan', 'FAN12G0435' => 'fan', 'FAN12G2426' => 'fan', 'FAN14G1707' => 'fan', 'FAN14G4725' => 'fan', 'FAN15G2071' => 'fan', 'FAN17G3065' => 'fan', 'FAN19G1376' => 'fan', 'FAN20G0354' => 'fan', 'FAN20G2429' => 'fan', 'FAN20G2658' => 'fan', 'FAN24G2343' => 'fan', 'FAN27G2362' => 'fan', 'FAN28G1765' => 'fan', 'FvH4_1g16020' => 'fve', 'FvH4_2g04890' => 'fve', 'FvH4_2g22270' => 'fve', 'FvH4_4g02630' => 'fve', 'FvH4_4g02640' => 'fve', 'FvH4_6g02650' => 'fve', 'Glyma.02G140600' => 'gma', 'Glyma.03G159900' => 'gma', 'Glyma.05G234800' => 'gma', 'Glyma.07G269600' => 'gma', 'Glyma.08G042300' => 'gma', 'Glyma.10G033500' => 'gma', 'Glyma.10G185200' => 'gma', 'Glyma.17G004300' => 'gma', 'Glyma.19G161900' => 'gma', 'Glyma.20G205100' => 'gma', 'Glyma.20G205200' => 'gma', 'Gohir.A01G139101' => 'ghi', 'Gohir.A02G035600' => 'ghi', 'Gohir.A02G117901' => 'ghi', 'Gohir.A07G210100' => 'ghi', 'Gohir.A07G210200' => 'ghi', 'Gohir.A08G061100' => 'ghi', 'Gohir.A09G223000' => 'ghi', 'Gohir.A09G223100' => 'ghi', 'Gohir.A10G113900' => 'ghi', 'Gohir.A10G114000' => 'ghi', 'Gohir.D02G042300' => 'ghi', 'Gohir.D07G216100' => 'ghi', 'Gohir.D07G216200' => 'ghi', 'Gohir.D08G070400' => 'ghi', 'Gohir.D09G225000' => 'ghi', 'Gohir.D09G225100' => 'ghi', 'Gohir.D10G152300' => 'ghi', 'Gohir.D10G153200' => 'ghi', 'Gohir.D11G133701' => 'ghi', 'Gorai.004G074100' => 'gra', 'Gorai.005G046800' => 'gra', 'Gorai.006G246500' => 'gra', 'Gorai.006G246600' => 'gra', 'Gorai.007G142900' => 'gra', 'Gorai.011G171000' => 'gra', 'Gorai.011G171100' => 'gra', 'Gorai.013G104300' => 'gra', 'Gorai.013G104400' => 'gra', 'GSVIVG01000754001' => 'vvi', 'GSVIVG01000756001' => 'vvi', 'GSVIVG01010903001' => 'vvi', 'GSVIVG01017623001' => 'vvi', 'GSVIVG01018113001' => 'vvi', 'GSVIVG01018116001' => 'vvi', 'GSVIVG01018118001' => 'vvi', 'HanXRQChr03g0076211' => 'han', 'HanXRQChr03g0092431' => 'han', 'HanXRQChr03g0092441' => 'han', 'HanXRQChr03g0092591' => 'han', 'HanXRQChr03g0092671' => 'han', 'HanXRQChr03g0092681' => 'han', 'HanXRQChr03g0092691' => 'han', 'HanXRQChr03g0092701' => 'han', 'HanXRQChr03g0092721' => 'han', 'HanXRQChr03g0092731' => 'han', 'HanXRQChr04g0113681' => 'han', 'HanXRQChr10g0281371' => 'han', 'HanXRQChr11g0337141' => 'han', 'HanXRQChr13g0424521' => 'han', 'HanXRQChr13g0424531' => 'han', 'HanXRQChr13g0424541' => 'han', 'HanXRQChr16g0498221' => 'han', 'Haze_04377' => 'cav', 'Haze_11298' => 'cav', 'Haze_24547' => 'cav', 'Haze_24550' => 'cav', 'Haze_26587' => 'cav', 'Hma1.2p1_0650F.1_g195410' => 'hma', 'Hma1.2p1_0893F.1_g233470' => 'hma', 'HPP92_006508' => 'vpl', 'HPP92_024780' => 'vpl', 'Hund02688' => 'sun', 'Hund09380' => 'sun', 'Hund09381' => 'sun', 'Hund09832' => 'sun', 'Hund09833' => 'sun', 'Hund11351' => 'sun', 'Hund11513' => 'sun', 'Lalb_Chr06g0162591' => 'lal', 'Lalb_Chr06g0162601' => 'lal', 'Lalb_Chr06g0169321' => 'lal', 'Lalb_Chr09g0330951' => 'lal', 'Lalb_Chr16g0387631' => 'lal', 'Lalb_Chr21g0306241' => 'lal', 'Lalb_Chr25g0290051' => 'lal', 'Lalb_Chr25g0290061' => 'lal', 'Lalb_Chr25g0290071' => 'lal', 'Lj1g0003876' => 'lja', 'Lj1P1207T36' => 'lonja', 'Lj2C1156G12' => 'lonja', 'Lj3A793G39' => 'lonja', 'Lj3C580G2' => 'lonja', 'Lj3C780G2' => 'lonja', 'Lj3C780T4' => 'lonja', 'Lj3C793G9' => 'lonja', 'Lj4g0012960' => 'lja', 'Lj5g0021252' => 'lja', 'Lj5g0021484' => 'lja', 'Lj5g0024528' => 'lja', 'Lj6A399T12' => 'lonja', 'Lj6A656G65' => 'lonja', 'Lsat_1_v5_gn_3_125500' => 'lsa', 'Lsat_1_v5_gn_3_125540' => 'lsa', 'Lsat_1_v5_gn_5_72701' => 'lsa', 'Lsat_1_v5_gn_8_91560' => 'lsa', 'Lsat_1_v5_gn_9_9640' => 'lsa', 'Manes.01G200600' => 'mes', 'Manes.01G200700' => 'mes', 'Manes.03G168900' => 'mes', 'Manes.03G169000' => 'mes', 'Manes.05G085801' => 'mes', 'Manes.05G086200' => 'mes', 'Manes.15G036700' => 'mes', 'Manes.15G036900' => 'mes', 'Mapoly0004s0172' => 'mpo', 'Mapoly0023s0001' => 'mpo', 'Mapoly0142s0012' => 'mpo', 'MBI01_g32854_MAGBIO' => 'mbi', 'MBI11_g24427_MAGBIO' => 'mbi', 'MBI11_g47319_MAGBIO' => 'mbi', 'MCO01G433' => 'mco', 'MD00G1187800' => 'mdo', 'MD04G1226500' => 'mdo', 'MD05G1203900' => 'mdo', 'MD10G1191100' => 'mdo', 'MD12G1243500' => 'mdo', 'MD13G1207000' => 'mdo', 'MD13G1207100' => 'mdo', 'MD16G1208600' => 'mdo', 'Medtr1g050352' => 'mtr', 'Medtr1g070385' => 'mtr', 'Medtr1g070450' => 'mtr', 'Medtr1g075200' => 'mtr', 'Medtr1g075250' => 'mtr', 'Medtr1g075260' => 'mtr', 'Medtr1g475250' => 'mtr', 'Medtr4g075450' => 'mtr', 'Medtr7g096300' => 'mtr', 'Medtr8g105110' => 'mtr', 'MELO3C006470.2' => 'cme', 'MELO3C006471.2' => 'cme', 'MELO3C020772.2' => 'cme', 'MELO3C026780.2' => 'cme', 'MELO3C026781.2' => 'cme', 'Migut.D00390' => 'egut', 'Migut.G00435' => 'egut', 'Migut.G00436' => 'egut', 'Migut.G00718' => 'egut', 'MSTRG.21891' => 'ama', 'MSTRG.26910' => 'ama', 'MSTRG.4099' => 'ama', 'MSTRG.9925' => 'ama', 'Nitab4.5_0000165g0010' => 'nta', 'Nitab4.5_0000209g0180' => 'nta', 'Nitab4.5_0000244g0440' => 'nta', 'Nitab4.5_0000525g0220' => 'nta', 'Nitab4.5_0001597g0020' => 'nta', 'Nitab4.5_0001878g0040' => 'nta', 'Nitab4.5_0001878g0060' => 'nta', 'Nitab4.5_0002838g0100' => 'nta', 'Nitab4.5_0002838g0120' => 'nta', 'Nitab4.5_0004798g0030' => 'nta', 'Nitab4.5_0005420g0010' => 'nta', 'Nitab4.5_0005507g0010' => 'nta', 'Nitab4.5_0005574g0020' => 'nta', 'Nitab4.5_0005838g0010' => 'nta', 'Nitab4.5_0010580g0020' => 'nta', 'Nn1g02599' => 'nnu', 'Nn1g02608' => 'nnu', 'Nn3g17742' => 'nnu', 'Nn3g19534' => 'nnu', 'Nn3g19535' => 'nnu', 'Oeu008790.1' => 'oeu', 'Oeu008792.1' => 'oeu', 'Oeu032590.1' => 'oeu', 'Oeu035349.1' => 'oeu', 'Oeu049791.1' => 'oeu', 'Os01g0774500' => 'osa', 'Os03g0628800' => 'osa', 'Os03g0798600' => 'osa', 'Os05g0508800' => 'osa', 'Peaxi162Scf00036g02018' => 'pax', 'Peaxi162Scf00578g00032' => 'pax', 'Peaxi162Scf00578g00317' => 'pax', 'Peaxi162Scf00785g00114' => 'pax', 'Peaxi162Scf00813g00119' => 'pax', 'Peaxi162Scf00906g00227' => 'pax', 'PGR004G0875' => 'pgr', 'PGR004G2424' => 'pgr', 'PGR031G1239' => 'pgr', 'PGR031G2474' => 'pgr', 'PGR044G0423' => 'pgr', 'PGSC0003DMG400001128' => 'stu', 'PGSC0003DMG400007336' => 'stu', 'PGSC0003DMG400016318' => 'stu', 'PGSC0003DMG400016319' => 'stu', 'PGSC0003DMG400018074' => 'stu', 'Phvul.001G157700' => 'pvu', 'Phvul.002G148550' => 'pvu', 'Phvul.002G320200' => 'pvu', 'Phvul.003G089200' => 'pvu', 'Phvul.007G126000' => 'pvu', 'Phvul.007G126100' => 'pvu', 'Phvul.007G178000' => 'pvu', 'Phvul.007G178200' => 'pvu', 'Potri.002G043000' => 'ptr', 'Potri.002G043200' => 'ptr', 'Potri.003G123750' => 'ptr', 'Potri.005G055401' => 'ptr', 'Potri.005G219700' => 'ptr', 'Potri.005G220000' => 'ptr', 'Potri.008G161901' => 'ptr', 'Potri.008G162000' => 'ptr', 'Potri.008G162400' => 'ptr', 'Potri.010G076900' => 'ptr', 'Pp3c12_9180' => 'ppa', 'Pp3c13_19770' => 'ppa', 'Pp3c14_22950' => 'ppa', 'Pp3c16_12160' => 'ppa', 'Pp3c27_7820' => 'ppa', 'Pp3c2_3490' => 'ppa', 'Pp3c3_23700' => 'ppa', 'Pp3c3_36520' => 'ppa', 'Pp3c4_15250' => 'ppa', 'PRCOL_00007002' => 'pco', 'Prupe.1G030600' => 'ppe', 'Prupe.1G030700' => 'ppe', 'Prupe.6G345200' => 'ppe', 'Prupe.8G230300' => 'ppe', 'Prupe.8G230500' => 'ppe', 'Psat3g059600' => 'psa', 'Psat5g200920' => 'psa', 'Psat6g056440' => 'psa', 'Psat6g057360' => 'psa', 'Psat6g134120' => 'psa', 'Psat6g134160' => 'psa', 'Psat7g008640' => 'psa', 'Psat7g185240' => 'psa', 'PSO017G1330' => 'pso', 'PSO063G6097' => 'pso', 'PSO170G0835' => 'pso', 'PSO170G2499' => 'pso', 'PSO210G5058' => 'pso', 'PSO210G6154' => 'pso', 'PSO585G0031' => 'pso', 'PSO832G0264' => 'pso', 'PSO832G4288' => 'pso', 'QL03p027355' => 'qlo', 'QL03p027430' => 'qlo', 'QL04p081380' => 'qlo', 'QL06p015642' => 'qlo', 'QL06p015650' => 'qlo', 'QL06p015686' => 'qlo', 'QL12p042927' => 'qlo', 'QL93p1863_0035' => 'qlo', 'RcHm_v2.0_Chr3g0450581' => 'rch', 'RcHm_v2.0_Chr4g0390371' => 'rch', 'RcHm_v2.0_Chr4g0390381' => 'rch', 'RcHm_v2.0_Chr4g0390491' => 'rch', 'RcHm_v2.0_Chr4g0390501' => 'rch', 'RcHm_v2.0_Chr6g0289231' => 'rch', 'Rhsim04G0190400' => 'rsi', 'Rhsim04G0190500' => 'rsi', 'Rhsim04G0190600' => 'rsi', 'Rhsim13G0031400' => 'rsi', 'Rhsim13G0165600' => 'rsi', 'RhsimUnG0114600' => 'rsi', 'RhsimUnG0114700' => 'rsi', 'Sabra02G0034800' => 'sbr', 'Sabra02G0035100' => 'sbr', 'Sabra05G0168600' => 'sbr', 'Sabra05G0168800' => 'sbr', 'Sabra08G0123700' => 'sbr', 'Sabra10G0031900' => 'sbr', 'Sabra13G0039000' => 'sbr', 'SalBow2G0782' => 'sbo', 'SalBow2G1403' => 'sbo', 'SalBow4G0074' => 'sbo', 'SalBow4G2635' => 'sbo', 'SalBow5G3010' => 'sbo', 'Sc05g0000870' => 'sci', 'Sc05g0000890' => 'sci', 'Sc13g0005000' => 'sci', 'Sc13g0005030' => 'sci', 'Sc19g0003790' => 'sci', 'Sc19g0003800' => 'sci', 'Sed0003467' => 'sed', 'Sed0009355' => 'sed', 'Sed0009894' => 'sed', 'Sed0011972' => 'sed', 'Sed0021483' => 'sed', 'Sed0021750' => 'sed', 'Sed0026279' => 'sed', 'SEGI_05312' => 'sgi', 'SEGI_10112' => 'sgi', 'SEGI_15835' => 'sgi', 'SEGI_30386' => 'sgi', 'SEGI_34122' => 'sgi', 'SEGI_35063' => 'sgi', 'SGA_v2.0_scaffold101G29794' => 'sas', 'SGA_v2.0_scaffold1G00573' => 'sas', 'SGA_v2.0_scaffold79G25637' => 'sas', 'SGA_v2.0_scaffold88G27283' => 'sas', 'SGA_v2.0_scaffold88G27285' => 'sas', 'SGA_v2.0_scaffold88G27331' => 'sas', 'SHI09937' => 'shi', 'SMO119G0302' => 'smo', 'SMO137G0231' => 'smo', 'SMO367G1151' => 'smo', 'Solyc02g082000.3' => 'sly', 'Solyc06g031670.3' => 'sly', 'Solyc06g053810.3' => 'sly', 'Solyc07g025457.1' => 'sly', 'Solyc08g059740.1' => 'sly', 'Solyc08g059750.3' => 'sly', 'Solyc09g083370.3' => 'sly', 'Solyc12g038950.3' => 'sly', 'Sopen02g026630' => 'spe', 'Sopen06g018930' => 'spe', 'Sopen06g018940' => 'spe', 'Sopen08g009460' => 'spe', 'Sopen09g032290' => 'spe', 'Sp1g03080' => 'spa', 'Sp1g03090' => 'spa', 'Sp1g05480' => 'spa', 'Sp2g07860' => 'spa', 'Sp2g08430' => 'spa', 'Sp2g08440' => 'spa', 'Sp2g26200' => 'spa', 'Sp4g13170' => 'spa', 'Sp6g33840' => 'spa', 'SpUn1204_0010' => 'spa', 'TAR365G0908' => 'tar', 'TAR381G1270' => 'tar', 'TAR381G1651' => 'tar', 'TAR625G1131' => 'tar', 'TAR633G0962' => 'tar', 'TAR633G1729' => 'tar', 'TAR633G1864' => 'tar', 'TAR636G0221' => 'tar', 'TAR636G0314' => 'tar', 'TAR636G3202' => 'tar', 'THA.LOC104800805' => 'tha', 'THA.LOC104801096' => 'tha', 'THA.LOC104801555' => 'tha', 'THA.LOC104808491' => 'tha', 'THA.LOC104808595' => 'tha', 'THA.LOC104815985' => 'tha', 'THA.LOC104822250' => 'tha', 'THA.LOC104826071' => 'tha', 'Thecc.01G265200' => 'tca', 'Thecc.01G265300' => 'tca', 'Thecc.01G265700' => 'tca', 'Thecc.03G109100' => 'tca', 'Thecc.04G245900' => 'tca', 'Thecc.04G246000' => 'tca', 'Thhalv10003334m.g' => 'esa', 'Thhalv10005508m.g' => 'esa', 'Thhalv10005643m.g' => 'esa', 'Thhalv10007316m.g' => 'esa', 'Thhalv10009006m.g' => 'esa', 'Thhalv10009309m.g' => 'esa', 'Thhalv10014917m.g' => 'esa', 'Thhalv10014919m.g' => 'esa', 'Thhalv10015393m.g' => 'esa', 'Thhalv10016515m.g' => 'esa', 'Thhalv10029242m.g' => 'esa', 'TPR.G16654' => 'tpr', 'TPR.G20589' => 'tpr', 'TPR.G23029' => 'tpr', 'TPR.G27731' => 'tpr', 'TPR.G28889' => 'tpr', 'TPR.G28899' => 'tpr', 'TPR.G30846' => 'tpr', 'TPR.G5452' => 'tpr', 'TPR.G5713' => 'tpr', 'TPR.G9046' => 'tpr', 'TPR.G9061' => 'tpr', 'TWI09G1075' => 'twi', 'TWI12G0806' => 'twi', 'TWI18G0108' => 'twi', 'TWI53G1361' => 'twi', 'TWI73G0185' => 'twi', 'TWI73G0427' => 'twi', 'unitig_37.g12001' => 'ugi', 'unitig_747.g21660' => 'ugi', 'unitig_748.g7232' => 'ugi', 'unitig_748.g7315' => 'ugi', 'unitig_85.g27262' => 'ugi', 'unitig_92.g28220' => 'ugi', 'vmacro02632' => 'vma', 'vmacro08410' => 'vma', 'vmacro08411' => 'vma', 'vmacro15407' => 'vma', 'VMungo0251G3619' => 'vmu', 'VMungo0720G1204' => 'vmu', 'VMungo0720G1918' => 'vmu', 'VMungo0720G2387' => 'vmu', 'VMungo0720G2961' => 'vmu', 'VMungo1215G2154' => 'vmu', 'VMungo1383G2411' => 'vmu', 'Zm00001eb051130' => 'zma', 'Zm00001eb116830' => 'zma', 'Zm00001eb116850' => 'zma', 'Zm00001eb151740' => 'zma', 'Zm00001eb292360' => 'zma', 'Zm00001eb301640' => 'zma' ), 'gf_id' => 'HOM05D000856', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000856' ), 'data_identifier' => 'HOM05D000856', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000856', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p00010' => 'bna', 'A03p04160' => 'bna', 'A03p17160' => 'bna', 'A04p23370' => 'bna', 'A05p14860' => 'bna', 'A08p37020' => 'bna', 'A09p08050' => 'bna', 'A09p66800' => 'bna', 'A09p67940' => 'bna', 'A10p02680' => 'bna', 'A10p05320' => 'bna', 'Aa31LG1G20560' => 'aar', 'Aa31LG1G20610' => 'aar', 'Aa31LG1G7810' => 'aar', 'Aa31LG5G3590' => 'aar', 'Aa31LG5G6140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3819' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4683' => 'aag', 'Actinidia04480' => 'ach', 'Actinidia05466' => 'ach', 'Actinidia08445' => 'ach', 'Actinidia21170' => 'ach', 'Actinidia24812' => 'ach', 'Actinidia24951' => 'ach', 'Actinidia40088' => 'ach', 'Ah.02g111660' => 'amhyb', 'Ah.11g048900' => 'amhyb', 'Ah.11g049910' => 'amhyb', 'AL1G13870' => 'aly', 'AL1G13880' => 'aly', 'AL1G16760' => 'aly', 'AL390U10020' => 'aly', 'AL4G25520' => 'aly', 'AL6G19890' => 'aly', 'AL6G19900' => 'aly', 'AL6G19910' => 'aly', 'AL8G40100' => 'aly', 'Aqoxy2G03562' => 'aox', 'Aqoxy5G00316' => 'aox', 'Aqoxy5G00926' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1628KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1H403S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2FU6SJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.882I6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8YRY2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YN1SN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AF70II' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZA8L1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F916KL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHRD8H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KTZ8QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S22EMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8M29T' => 'arhy', 'AT1G04270' => 'ath', 'AT1G04280' => 'ath', 'AT1G06750' => 'ath', 'AT1G33850' => 'ath', 'AT2G30630' => 'ath', 'AT5G09490' => 'ath', 'AT5G09500' => 'ath', 'AT5G09510' => 'ath', 'AT5G43640' => 'ath', 'AT5G63070' => 'ath', 'ATR0605G315' => 'atr', 'Atru.chr11.175' => 'acertr', 'Atru.chr11.653' => 'acertr', 'Atru.chr3.1616' => 'acertr', 'Atru.chr4.2230' => 'acertr', 'Atru.chr4.2232' => 'acertr', 'Atru.chr5.1598' => 'acertr', 'Atru.chr5.1600' => 'acertr', 'Atru.chr5.2188' => 'acertr', 'AUR62008326' => 'cqu', 'AUR62011922' => 'cqu', 'AUR62011924' => 'cqu', 'AUR62021771' => 'cqu', 'AUR62032237' => 'cqu', 'AUR62032240' => 'cqu', 'BcaB01g05572' => 'bca', 'BcaB02g10337' => 'bca', 'BcaB04g19944' => 'bca', 'BcaB05g21548' => 'bca', 'BcaB05g21549' => 'bca', 'BcaB05g23227' => 'bca', 'BcaB06g26256' => 'bca', 'BcaB06g26257' => 'bca', 'BcaB06g28379' => 'bca', 'BcaC02g11159' => 'bca', 'BcaC03g13258' => 'bca', 'BcaC03g13259' => 'bca', 'BcaC05g24456' => 'bca', 'BcaC05g24457' => 'bca', 'BcaC07g36922' => 'bca', 'BcaC07g36923' => 'bca', 'BcaC07g42050' => 'bca', 'BcaC07g42176' => 'bca', 'BcaC07g42195' => 'bca', 'BcaC07g42196' => 'bca', 'BcaNung06674' => 'bca', 'BolC2t06351H' => 'bol', 'BolC2t06352H' => 'bol', 'BolC3t12993H' => 'bol', 'BolC4t23525H' => 'bol', 'BolC4t27475H' => 'bol', 'BolC5t29025H' => 'bol', 'BolC5t29026H' => 'bol', 'BolC8t46898H' => 'bol', 'BolC8t46899H' => 'bol', 'BolC8t52630H' => 'bol', 'BolC8t52765H' => 'bol', 'BolC9t53824H' => 'bol', 'BraA03t09760Z' => 'bra', 'BraA03t10990Z' => 'bra', 'BraA05t20413Z' => 'bra', 'BraA08t35602Z' => 'bra', 'BraA09t36458Z' => 'bra', 'BraA09t42018Z' => 'bra', 'BraA09t42129Z' => 'bra', 'BraA10t42536Z' => 'bra', 'BraA10t42537Z' => 'bra', 'C01p10690' => 'bna', 'C02p03890' => 'bna', 'C02p03900' => 'bna', 'C03p04620' => 'bna', 'C04p19870' => 'bna', 'C04p59670' => 'bna', 'C05p02460' => 'bna', 'C05p02470' => 'bna', 'C08p00980' => 'bna', 'C08p00990' => 'bna', 'C08p51030' => 'bna', 'C08p52360' => 'bna', 'C09p09120' => 'bna', 'CAN.G19.15' => 'can', 'CAN.G251.10' => 'can', 'CAN.G251.9' => 'can', 'CAN.G398.24' => 'can', 'CAN.G410.32' => 'can', 'CAN.G881.2' => 'can', 'CANSAT01G3025' => 'cansat', 'CANSAT78G1211' => 'cansat', 'CANSAT78G1218' => 'cansat', 'CANSAT78G1521' => 'cansat', 'CANSAT78G1670' => 'cansat', 'CARHR003600' => 'chi', 'CARHR003610' => 'chi', 'CARHR006290' => 'chi', 'CARHR006430' => 'chi', 'CARHR124110' => 'chi', 'CARHR203870' => 'chi', 'CARHR203880' => 'chi', 'CARHR203890' => 'chi', 'CARHR276880' => 'chi', 'Carub.0001s0346' => 'cru', 'Carub.0001s0347' => 'cru', 'Carub.0001s0607' => 'cru', 'Carub.0003s2768' => 'cru', 'Carub.0003s2769' => 'cru', 'Carub.0004s1178' => 'cru', 'Carub.0006s0806' => 'cru', 'Carub.0006s0807' => 'cru', 'Carub.0006s0808' => 'cru', 'Carub.0008s0501' => 'cru', 'Carub.0008s2379' => 'cru', 'Ca_08655_v3' => 'car', 'Ca_08922_v3' => 'car', 'Ca_08923_v3' => 'car', 'Ca_09119_v3' => 'car', 'Ca_09703_v3' => 'car', 'Ca_09705_v3' => 'car', 'Ca_09835_v3' => 'car', 'Ca_26403_v3' => 'car', 'Ca_30719_v3' => 'car', 'CBR_g17958' => 'cbr', 'CBR_g40516' => 'cbr', 'Cc00_g05350' => 'ccan', 'Cc01_g18690' => 'ccan', 'Cc03_g04830' => 'ccan', 'Cc03_g04850' => 'ccan', 'CDE02G4469' => 'cde', 'CDE06G0883' => 'cde', 'CDE06G1295' => 'cde', 'CDE06G1390' => 'cde', 'CDE07G0584' => 'cde', 'CDE07G1084' => 'cde', 'CDE08G1259' => 'cde', 'Cfa002341' => 'cfa', 'Cfa024337' => 'cfa', 'Ciclev10004749m.g' => 'ccl', 'Ciclev10006127m.g' => 'ccl', 'Ciclev10019720m.g' => 'ccl', 'Ciclev10022652m.g' => 'ccl', 'CiPaw.01G190400' => 'cil', 'CiPaw.01G190500' => 'cil', 'CiPaw.02G116400' => 'cil', 'CiPaw.02G116500' => 'cil', 'CiPaw.04G183000' => 'cil', 'CiPaw.04G183300' => 'cil', 'ClCG05G004610' => 'cla', 'ClCG05G004620' => 'cla', 'ClCG06G006730' => 'cla', 'ClCG06G006740' => 'cla', 'ClCG11G003690' => 'cla', 'COL.COLO4_08276' => 'col', 'COL.COLO4_08277' => 'col', 'COL.COLO4_15787' => 'col', 'COL.COLO4_15789' => 'col', 'Cpa.g.c44815' => 'cpa', 'Cpa.g.sc52.144' => 'cpa', 'Cpa.g.sc58.46' => 'cpa', 'Cpa.g.sc58.47' => 'cpa', 'Cre08.g360900' => 'cre', 'CsaV3_2G013030' => 'csa', 'CsaV3_2G013050' => 'csa', 'CsaV3_2G015620' => 'csa', 'CsaV3_3G012590' => 'csa', 'CsaV3_3G012600' => 'csa', 'CSS0001641' => 'camsi', 'CSS0008310' => 'camsi', 'CSS0013011' => 'camsi', 'CSS0017147' => 'camsi', 'CSS0022970' => 'camsi', 'CSS0025655' => 'camsi', 'CSS0028665' => 'camsi', 'CSS0029117' => 'camsi', 'CSS0032024' => 'camsi', 'CSS0039681' => 'camsi', 'CSS0046516' => 'camsi', 'CSS0050307' => 'camsi', 'DCAR_005871' => 'dca', 'DCAR_007342' => 'dca', 'DCAR_024228' => 'dca', 'DCAR_027277' => 'dca', 'DCAR_030718' => 'dca', 'Dinv20287' => 'din', 'Dinv22461' => 'din', 'Dinv22464' => 'din', 'Dinv29912' => 'din', 'Dinv29913' => 'din', 'Dinv34580' => 'din', 'Dinv34582' => 'din', 'Dinv44632' => 'din', 'Duzib052G0266' => 'dzi', 'Duzib133G0907' => 'dzi', 'Duzib133G1034' => 'dzi', 'Duzib138G0207' => 'dzi', 'Duzib138G0491' => 'dzi', 'Duzib151G0812' => 'dzi', 'Duzib151G1166' => 'dzi', 'Duzib168G0192' => 'dzi', 'Duzib211G0077' => 'dzi', 'Duzib212G0429' => 'dzi', 'Duzib212G0472' => 'dzi', 'ECA233G2617' => 'eca', 'ECA236G4188' => 'eca', 'ECA240G0936' => 'eca', 'ECA240G1129' => 'eca', 'ECA247G0623' => 'eca', 'EL10Ac5g10451' => 'bvu', 'EL10Ac5g10453' => 'bvu', 'EL10Ac5g10894' => 'bvu', 'Eucgr.H00192' => 'egr', 'Eucgr.H00193' => 'egr', 'Eucgr.H00194' => 'egr', 'Eucgr.J01562' => 'egr', 'Eucgr.K03301' => 'egr', 'FAN02G0632' => 'fan', 'FAN05G5378' => 'fan', 'FAN09G3247' => 'fan', 'FAN12G0435' => 'fan', 'FAN12G2426' => 'fan', 'FAN14G1707' => 'fan', 'FAN14G4725' => 'fan', 'FAN15G2071' => 'fan', 'FAN17G3065' => 'fan', 'FAN19G1376' => 'fan', 'FAN20G0354' => 'fan', 'FAN20G2429' => 'fan', 'FAN20G2658' => 'fan', 'FAN24G2343' => 'fan', 'FAN27G2362' => 'fan', 'FAN28G1765' => 'fan', 'FvH4_1g16020' => 'fve', 'FvH4_2g04890' => 'fve', 'FvH4_2g22270' => 'fve', 'FvH4_4g02630' => 'fve', 'FvH4_4g02640' => 'fve', 'FvH4_6g02650' => 'fve', 'Glyma.02G140600' => 'gma', 'Glyma.03G159900' => 'gma', 'Glyma.05G234800' => 'gma', 'Glyma.07G269600' => 'gma', 'Glyma.08G042300' => 'gma', 'Glyma.10G033500' => 'gma', 'Glyma.10G185200' => 'gma', 'Glyma.17G004300' => 'gma', 'Glyma.19G161900' => 'gma', 'Glyma.20G205100' => 'gma', 'Glyma.20G205200' => 'gma', 'Gohir.A01G139101' => 'ghi', 'Gohir.A02G035600' => 'ghi', 'Gohir.A02G117901' => 'ghi', 'Gohir.A07G210100' => 'ghi', 'Gohir.A07G210200' => 'ghi', 'Gohir.A08G061100' => 'ghi', 'Gohir.A09G223000' => 'ghi', 'Gohir.A09G223100' => 'ghi', 'Gohir.A10G113900' => 'ghi', 'Gohir.A10G114000' => 'ghi', 'Gohir.D02G042300' => 'ghi', 'Gohir.D07G216100' => 'ghi', 'Gohir.D07G216200' => 'ghi', 'Gohir.D08G070400' => 'ghi', 'Gohir.D09G225000' => 'ghi', 'Gohir.D09G225100' => 'ghi', 'Gohir.D10G152300' => 'ghi', 'Gohir.D10G153200' => 'ghi', 'Gohir.D11G133701' => 'ghi', 'Gorai.004G074100' => 'gra', 'Gorai.005G046800' => 'gra', 'Gorai.006G246500' => 'gra', 'Gorai.006G246600' => 'gra', 'Gorai.007G142900' => 'gra', 'Gorai.011G171000' => 'gra', 'Gorai.011G171100' => 'gra', 'Gorai.013G104300' => 'gra', 'Gorai.013G104400' => 'gra', 'GSVIVG01000754001' => 'vvi', 'GSVIVG01000756001' => 'vvi', 'GSVIVG01010903001' => 'vvi', 'GSVIVG01017623001' => 'vvi', 'GSVIVG01018113001' => 'vvi', 'GSVIVG01018116001' => 'vvi', 'GSVIVG01018118001' => 'vvi', 'HanXRQChr03g0076211' => 'han', 'HanXRQChr03g0092431' => 'han', 'HanXRQChr03g0092441' => 'han', 'HanXRQChr03g0092591' => 'han', 'HanXRQChr03g0092671' => 'han', 'HanXRQChr03g0092681' => 'han', 'HanXRQChr03g0092691' => 'han', 'HanXRQChr03g0092701' => 'han', 'HanXRQChr03g0092721' => 'han', 'HanXRQChr03g0092731' => 'han', 'HanXRQChr04g0113681' => 'han', 'HanXRQChr10g0281371' => 'han', 'HanXRQChr11g0337141' => 'han', 'HanXRQChr13g0424521' => 'han', 'HanXRQChr13g0424531' => 'han', 'HanXRQChr13g0424541' => 'han', 'HanXRQChr16g0498221' => 'han', 'Haze_04377' => 'cav', 'Haze_11298' => 'cav', 'Haze_24547' => 'cav', 'Haze_24550' => 'cav', 'Haze_26587' => 'cav', 'Hma1.2p1_0650F.1_g195410' => 'hma', 'Hma1.2p1_0893F.1_g233470' => 'hma', 'HPP92_006508' => 'vpl', 'HPP92_024780' => 'vpl', 'Hund02688' => 'sun', 'Hund09380' => 'sun', 'Hund09381' => 'sun', 'Hund09832' => 'sun', 'Hund09833' => 'sun', 'Hund11351' => 'sun', 'Hund11513' => 'sun', 'Lalb_Chr06g0162591' => 'lal', 'Lalb_Chr06g0162601' => 'lal', 'Lalb_Chr06g0169321' => 'lal', 'Lalb_Chr09g0330951' => 'lal', 'Lalb_Chr16g0387631' => 'lal', 'Lalb_Chr21g0306241' => 'lal', 'Lalb_Chr25g0290051' => 'lal', 'Lalb_Chr25g0290061' => 'lal', 'Lalb_Chr25g0290071' => 'lal', 'Lj1g0003876' => 'lja', 'Lj1P1207T36' => 'lonja', 'Lj2C1156G12' => 'lonja', 'Lj3A793G39' => 'lonja', 'Lj3C580G2' => 'lonja', 'Lj3C780G2' => 'lonja', 'Lj3C780T4' => 'lonja', 'Lj3C793G9' => 'lonja', 'Lj4g0012960' => 'lja', 'Lj5g0021252' => 'lja', 'Lj5g0021484' => 'lja', 'Lj5g0024528' => 'lja', 'Lj6A399T12' => 'lonja', 'Lj6A656G65' => 'lonja', 'Lsat_1_v5_gn_3_125500' => 'lsa', 'Lsat_1_v5_gn_3_125540' => 'lsa', 'Lsat_1_v5_gn_5_72701' => 'lsa', 'Lsat_1_v5_gn_8_91560' => 'lsa', 'Lsat_1_v5_gn_9_9640' => 'lsa', 'Manes.01G200600' => 'mes', 'Manes.01G200700' => 'mes', 'Manes.03G168900' => 'mes', 'Manes.03G169000' => 'mes', 'Manes.05G085801' => 'mes', 'Manes.05G086200' => 'mes', 'Manes.15G036700' => 'mes', 'Manes.15G036900' => 'mes', 'Mapoly0004s0172' => 'mpo', 'Mapoly0023s0001' => 'mpo', 'Mapoly0142s0012' => 'mpo', 'MBI01_g32854_MAGBIO' => 'mbi', 'MBI11_g24427_MAGBIO' => 'mbi', 'MBI11_g47319_MAGBIO' => 'mbi', 'MCO01G433' => 'mco', 'MD00G1187800' => 'mdo', 'MD04G1226500' => 'mdo', 'MD05G1203900' => 'mdo', 'MD10G1191100' => 'mdo', 'MD12G1243500' => 'mdo', 'MD13G1207000' => 'mdo', 'MD13G1207100' => 'mdo', 'MD16G1208600' => 'mdo', 'Medtr1g050352' => 'mtr', 'Medtr1g070385' => 'mtr', 'Medtr1g070450' => 'mtr', 'Medtr1g075200' => 'mtr', 'Medtr1g075250' => 'mtr', 'Medtr1g075260' => 'mtr', 'Medtr1g475250' => 'mtr', 'Medtr4g075450' => 'mtr', 'Medtr7g096300' => 'mtr', 'Medtr8g105110' => 'mtr', 'MELO3C006470.2' => 'cme', 'MELO3C006471.2' => 'cme', 'MELO3C020772.2' => 'cme', 'MELO3C026780.2' => 'cme', 'MELO3C026781.2' => 'cme', 'Migut.D00390' => 'egut', 'Migut.G00435' => 'egut', 'Migut.G00436' => 'egut', 'Migut.G00718' => 'egut', 'MSTRG.21891' => 'ama', 'MSTRG.26910' => 'ama', 'MSTRG.4099' => 'ama', 'MSTRG.9925' => 'ama', 'Nitab4.5_0000165g0010' => 'nta', 'Nitab4.5_0000209g0180' => 'nta', 'Nitab4.5_0000244g0440' => 'nta', 'Nitab4.5_0000525g0220' => 'nta', 'Nitab4.5_0001597g0020' => 'nta', 'Nitab4.5_0001878g0040' => 'nta', 'Nitab4.5_0001878g0060' => 'nta', 'Nitab4.5_0002838g0100' => 'nta', 'Nitab4.5_0002838g0120' => 'nta', 'Nitab4.5_0004798g0030' => 'nta', 'Nitab4.5_0005420g0010' => 'nta', 'Nitab4.5_0005507g0010' => 'nta', 'Nitab4.5_0005574g0020' => 'nta', 'Nitab4.5_0005838g0010' => 'nta', 'Nitab4.5_0010580g0020' => 'nta', 'Nn1g02599' => 'nnu', 'Nn1g02608' => 'nnu', 'Nn3g17742' => 'nnu', 'Nn3g19534' => 'nnu', 'Nn3g19535' => 'nnu', 'Oeu008790.1' => 'oeu', 'Oeu008792.1' => 'oeu', 'Oeu032590.1' => 'oeu', 'Oeu035349.1' => 'oeu', 'Oeu049791.1' => 'oeu', 'Os01g0774500' => 'osa', 'Os03g0628800' => 'osa', 'Os03g0798600' => 'osa', 'Os05g0508800' => 'osa', 'Peaxi162Scf00036g02018' => 'pax', 'Peaxi162Scf00578g00032' => 'pax', 'Peaxi162Scf00578g00317' => 'pax', 'Peaxi162Scf00785g00114' => 'pax', 'Peaxi162Scf00813g00119' => 'pax', 'Peaxi162Scf00906g00227' => 'pax', 'PGR004G0875' => 'pgr', 'PGR004G2424' => 'pgr', 'PGR031G1239' => 'pgr', 'PGR031G2474' => 'pgr', 'PGR044G0423' => 'pgr', 'PGSC0003DMG400001128' => 'stu', 'PGSC0003DMG400007336' => 'stu', 'PGSC0003DMG400016318' => 'stu', 'PGSC0003DMG400016319' => 'stu', 'PGSC0003DMG400018074' => 'stu', 'Phvul.001G157700' => 'pvu', 'Phvul.002G148550' => 'pvu', 'Phvul.002G320200' => 'pvu', 'Phvul.003G089200' => 'pvu', 'Phvul.007G126000' => 'pvu', 'Phvul.007G126100' => 'pvu', 'Phvul.007G178000' => 'pvu', 'Phvul.007G178200' => 'pvu', 'Potri.002G043000' => 'ptr', 'Potri.002G043200' => 'ptr', 'Potri.003G123750' => 'ptr', 'Potri.005G055401' => 'ptr', 'Potri.005G219700' => 'ptr', 'Potri.005G220000' => 'ptr', 'Potri.008G161901' => 'ptr', 'Potri.008G162000' => 'ptr', 'Potri.008G162400' => 'ptr', 'Potri.010G076900' => 'ptr', 'Pp3c12_9180' => 'ppa', 'Pp3c13_19770' => 'ppa', 'Pp3c14_22950' => 'ppa', 'Pp3c16_12160' => 'ppa', 'Pp3c27_7820' => 'ppa', 'Pp3c2_3490' => 'ppa', 'Pp3c3_23700' => 'ppa', 'Pp3c3_36520' => 'ppa', 'Pp3c4_15250' => 'ppa', 'PRCOL_00007002' => 'pco', 'Prupe.1G030600' => 'ppe', 'Prupe.1G030700' => 'ppe', 'Prupe.6G345200' => 'ppe', 'Prupe.8G230300' => 'ppe', 'Prupe.8G230500' => 'ppe', 'Psat3g059600' => 'psa', 'Psat5g200920' => 'psa', 'Psat6g056440' => 'psa', 'Psat6g057360' => 'psa', 'Psat6g134120' => 'psa', 'Psat6g134160' => 'psa', 'Psat7g008640' => 'psa', 'Psat7g185240' => 'psa', 'PSO017G1330' => 'pso', 'PSO063G6097' => 'pso', 'PSO170G0835' => 'pso', 'PSO170G2499' => 'pso', 'PSO210G5058' => 'pso', 'PSO210G6154' => 'pso', 'PSO585G0031' => 'pso', 'PSO832G0264' => 'pso', 'PSO832G4288' => 'pso', 'QL03p027355' => 'qlo', 'QL03p027430' => 'qlo', 'QL04p081380' => 'qlo', 'QL06p015642' => 'qlo', 'QL06p015650' => 'qlo', 'QL06p015686' => 'qlo', 'QL12p042927' => 'qlo', 'QL93p1863_0035' => 'qlo', 'RcHm_v2.0_Chr3g0450581' => 'rch', 'RcHm_v2.0_Chr4g0390371' => 'rch', 'RcHm_v2.0_Chr4g0390381' => 'rch', 'RcHm_v2.0_Chr4g0390491' => 'rch', 'RcHm_v2.0_Chr4g0390501' => 'rch', 'RcHm_v2.0_Chr6g0289231' => 'rch', 'Rhsim04G0190400' => 'rsi', 'Rhsim04G0190500' => 'rsi', 'Rhsim04G0190600' => 'rsi', 'Rhsim13G0031400' => 'rsi', 'Rhsim13G0165600' => 'rsi', 'RhsimUnG0114600' => 'rsi', 'RhsimUnG0114700' => 'rsi', 'Sabra02G0034800' => 'sbr', 'Sabra02G0035100' => 'sbr', 'Sabra05G0168600' => 'sbr', 'Sabra05G0168800' => 'sbr', 'Sabra08G0123700' => 'sbr', 'Sabra10G0031900' => 'sbr', 'Sabra13G0039000' => 'sbr', 'SalBow2G0782' => 'sbo', 'SalBow2G1403' => 'sbo', 'SalBow4G0074' => 'sbo', 'SalBow4G2635' => 'sbo', 'SalBow5G3010' => 'sbo', 'Sc05g0000870' => 'sci', 'Sc05g0000890' => 'sci', 'Sc13g0005000' => 'sci', 'Sc13g0005030' => 'sci', 'Sc19g0003790' => 'sci', 'Sc19g0003800' => 'sci', 'Sed0003467' => 'sed', 'Sed0009355' => 'sed', 'Sed0009894' => 'sed', 'Sed0011972' => 'sed', 'Sed0021483' => 'sed', 'Sed0021750' => 'sed', 'Sed0026279' => 'sed', 'SEGI_05312' => 'sgi', 'SEGI_10112' => 'sgi', 'SEGI_15835' => 'sgi', 'SEGI_30386' => 'sgi', 'SEGI_34122' => 'sgi', 'SEGI_35063' => 'sgi', 'SGA_v2.0_scaffold101G29794' => 'sas', 'SGA_v2.0_scaffold1G00573' => 'sas', 'SGA_v2.0_scaffold79G25637' => 'sas', 'SGA_v2.0_scaffold88G27283' => 'sas', 'SGA_v2.0_scaffold88G27285' => 'sas', 'SGA_v2.0_scaffold88G27331' => 'sas', 'SHI09937' => 'shi', 'SMO119G0302' => 'smo', 'SMO137G0231' => 'smo', 'SMO367G1151' => 'smo', 'Solyc02g082000.3' => 'sly', 'Solyc06g031670.3' => 'sly', 'Solyc06g053810.3' => 'sly', 'Solyc07g025457.1' => 'sly', 'Solyc08g059740.1' => 'sly', 'Solyc08g059750.3' => 'sly', 'Solyc09g083370.3' => 'sly', 'Solyc12g038950.3' => 'sly', 'Sopen02g026630' => 'spe', 'Sopen06g018930' => 'spe', 'Sopen06g018940' => 'spe', 'Sopen08g009460' => 'spe', 'Sopen09g032290' => 'spe', 'Sp1g03080' => 'spa', 'Sp1g03090' => 'spa', 'Sp1g05480' => 'spa', 'Sp2g07860' => 'spa', 'Sp2g08430' => 'spa', 'Sp2g08440' => 'spa', 'Sp2g26200' => 'spa', 'Sp4g13170' => 'spa', 'Sp6g33840' => 'spa', 'SpUn1204_0010' => 'spa', 'TAR365G0908' => 'tar', 'TAR381G1270' => 'tar', 'TAR381G1651' => 'tar', 'TAR625G1131' => 'tar', 'TAR633G0962' => 'tar', 'TAR633G1729' => 'tar', 'TAR633G1864' => 'tar', 'TAR636G0221' => 'tar', 'TAR636G0314' => 'tar', 'TAR636G3202' => 'tar', 'THA.LOC104800805' => 'tha', 'THA.LOC104801096' => 'tha', 'THA.LOC104801555' => 'tha', 'THA.LOC104808491' => 'tha', 'THA.LOC104808595' => 'tha', 'THA.LOC104815985' => 'tha', 'THA.LOC104822250' => 'tha', 'THA.LOC104826071' => 'tha', 'Thecc.01G265200' => 'tca', 'Thecc.01G265300' => 'tca', 'Thecc.01G265700' => 'tca', 'Thecc.03G109100' => 'tca', 'Thecc.04G245900' => 'tca', 'Thecc.04G246000' => 'tca', 'Thhalv10003334m.g' => 'esa', 'Thhalv10005508m.g' => 'esa', 'Thhalv10005643m.g' => 'esa', 'Thhalv10007316m.g' => 'esa', 'Thhalv10009006m.g' => 'esa', 'Thhalv10009309m.g' => 'esa', 'Thhalv10014917m.g' => 'esa', 'Thhalv10014919m.g' => 'esa', 'Thhalv10015393m.g' => 'esa', 'Thhalv10016515m.g' => 'esa', 'Thhalv10029242m.g' => 'esa', 'TPR.G16654' => 'tpr', 'TPR.G20589' => 'tpr', 'TPR.G23029' => 'tpr', 'TPR.G27731' => 'tpr', 'TPR.G28889' => 'tpr', 'TPR.G28899' => 'tpr', 'TPR.G30846' => 'tpr', 'TPR.G5452' => 'tpr', 'TPR.G5713' => 'tpr', 'TPR.G9046' => 'tpr', 'TPR.G9061' => 'tpr', 'TWI09G1075' => 'twi', 'TWI12G0806' => 'twi', 'TWI18G0108' => 'twi', 'TWI53G1361' => 'twi', 'TWI73G0185' => 'twi', 'TWI73G0427' => 'twi', 'unitig_37.g12001' => 'ugi', 'unitig_747.g21660' => 'ugi', 'unitig_748.g7232' => 'ugi', 'unitig_748.g7315' => 'ugi', 'unitig_85.g27262' => 'ugi', 'unitig_92.g28220' => 'ugi', 'vmacro02632' => 'vma', 'vmacro08410' => 'vma', 'vmacro08411' => 'vma', 'vmacro15407' => 'vma', 'VMungo0251G3619' => 'vmu', 'VMungo0720G1204' => 'vmu', 'VMungo0720G1918' => 'vmu', 'VMungo0720G2387' => 'vmu', 'VMungo0720G2961' => 'vmu', 'VMungo1215G2154' => 'vmu', 'VMungo1383G2411' => 'vmu', 'Zm00001eb051130' => 'zma', 'Zm00001eb116830' => 'zma', 'Zm00001eb116850' => 'zma', 'Zm00001eb151740' => 'zma', 'Zm00001eb292360' => 'zma', 'Zm00001eb301640' => 'zma' ) $gf_id = 'HOM05D000856' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000856' ) $data_identifier = 'HOM05D000856' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 13, 'ath' => (int) 10, 'atr' => (int) 1, 'acertr' => (int) 8, 'cqu' => (int) 6, 'bca' => (int) 21, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 11, 'car' => (int) 9, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 8, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 5, 'fan' => (int) 16, 'fve' => (int) 6, 'gma' => (int) 11, 'ghi' => (int) 19, 'gra' => (int) 9, 'vvi' => (int) 7, 'han' => (int) 17, 'cav' => (int) 5, 'hma' => (int) 2, 'vpl' => (int) 2, 'sun' => (int) 7, 'lal' => (int) 9, 'lja' => (int) 5, 'lonja' => (int) 9, 'lsa' => (int) 5, 'mes' => (int) 8, 'mpo' => (int) 3, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 10, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 15, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 9, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 9, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 6, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 5, 'spa' => (int) 10, 'tar' => (int) 10, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 11, 'tpr' => (int) 11, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 4, 'vmu' => (int) 7, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb301640' $species_info = array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ) $local_species = 'camsi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000856', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p00010' => 'bna', 'A03p04160' => 'bna', 'A03p17160' => 'bna', 'A04p23370' => 'bna', 'A05p14860' => 'bna', 'A08p37020' => 'bna', 'A09p08050' => 'bna', 'A09p66800' => 'bna', 'A09p67940' => 'bna', 'A10p02680' => 'bna', 'A10p05320' => 'bna', 'Aa31LG1G20560' => 'aar', 'Aa31LG1G20610' => 'aar', 'Aa31LG1G7810' => 'aar', 'Aa31LG5G3590' => 'aar', 'Aa31LG5G6140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3819' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4683' => 'aag', 'Actinidia04480' => 'ach', 'Actinidia05466' => 'ach', 'Actinidia08445' => 'ach', 'Actinidia21170' => 'ach', 'Actinidia24812' => 'ach', 'Actinidia24951' => 'ach', 'Actinidia40088' => 'ach', 'Ah.02g111660' => 'amhyb', 'Ah.11g048900' => 'amhyb', 'Ah.11g049910' => 'amhyb', 'AL1G13870' => 'aly', 'AL1G13880' => 'aly', 'AL1G16760' => 'aly', 'AL390U10020' => 'aly', 'AL4G25520' => 'aly', 'AL6G19890' => 'aly', 'AL6G19900' => 'aly', 'AL6G19910' => 'aly', 'AL8G40100' => 'aly', 'Aqoxy2G03562' => 'aox', 'Aqoxy5G00316' => 'aox', 'Aqoxy5G00926' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1628KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1H403S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2FU6SJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.882I6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8YRY2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YN1SN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AF70II' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZA8L1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F916KL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHRD8H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KTZ8QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S22EMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8M29T' => 'arhy', 'AT1G04270' => 'ath', 'AT1G04280' => 'ath', 'AT1G06750' => 'ath', 'AT1G33850' => 'ath', 'AT2G30630' => 'ath', 'AT5G09490' => 'ath', 'AT5G09500' => 'ath', 'AT5G09510' => 'ath', 'AT5G43640' => 'ath', 'AT5G63070' => 'ath', 'ATR0605G315' => 'atr', 'Atru.chr11.175' => 'acertr', 'Atru.chr11.653' => 'acertr', 'Atru.chr3.1616' => 'acertr', 'Atru.chr4.2230' => 'acertr', 'Atru.chr4.2232' => 'acertr', 'Atru.chr5.1598' => 'acertr', 'Atru.chr5.1600' => 'acertr', 'Atru.chr5.2188' => 'acertr', 'AUR62008326' => 'cqu', 'AUR62011922' => 'cqu', 'AUR62011924' => 'cqu', 'AUR62021771' => 'cqu', 'AUR62032237' => 'cqu', 'AUR62032240' => 'cqu', 'BcaB01g05572' => 'bca', 'BcaB02g10337' => 'bca', 'BcaB04g19944' => 'bca', 'BcaB05g21548' => 'bca', 'BcaB05g21549' => 'bca', 'BcaB05g23227' => 'bca', 'BcaB06g26256' => 'bca', 'BcaB06g26257' => 'bca', 'BcaB06g28379' => 'bca', 'BcaC02g11159' => 'bca', 'BcaC03g13258' => 'bca', 'BcaC03g13259' => 'bca', 'BcaC05g24456' => 'bca', 'BcaC05g24457' => 'bca', 'BcaC07g36922' => 'bca', 'BcaC07g36923' => 'bca', 'BcaC07g42050' => 'bca', 'BcaC07g42176' => 'bca', 'BcaC07g42195' => 'bca', 'BcaC07g42196' => 'bca', 'BcaNung06674' => 'bca', 'BolC2t06351H' => 'bol', 'BolC2t06352H' => 'bol', 'BolC3t12993H' => 'bol', 'BolC4t23525H' => 'bol', 'BolC4t27475H' => 'bol', 'BolC5t29025H' => 'bol', 'BolC5t29026H' => 'bol', 'BolC8t46898H' => 'bol', 'BolC8t46899H' => 'bol', 'BolC8t52630H' => 'bol', 'BolC8t52765H' => 'bol', 'BolC9t53824H' => 'bol', 'BraA03t09760Z' => 'bra', 'BraA03t10990Z' => 'bra', 'BraA05t20413Z' => 'bra', 'BraA08t35602Z' => 'bra', 'BraA09t36458Z' => 'bra', 'BraA09t42018Z' => 'bra', 'BraA09t42129Z' => 'bra', 'BraA10t42536Z' => 'bra', 'BraA10t42537Z' => 'bra', 'C01p10690' => 'bna', 'C02p03890' => 'bna', 'C02p03900' => 'bna', 'C03p04620' => 'bna', 'C04p19870' => 'bna', 'C04p59670' => 'bna', 'C05p02460' => 'bna', 'C05p02470' => 'bna', 'C08p00980' => 'bna', 'C08p00990' => 'bna', 'C08p51030' => 'bna', 'C08p52360' => 'bna', 'C09p09120' => 'bna', 'CAN.G19.15' => 'can', 'CAN.G251.10' => 'can', 'CAN.G251.9' => 'can', 'CAN.G398.24' => 'can', 'CAN.G410.32' => 'can', 'CAN.G881.2' => 'can', 'CANSAT01G3025' => 'cansat', 'CANSAT78G1211' => 'cansat', 'CANSAT78G1218' => 'cansat', 'CANSAT78G1521' => 'cansat', 'CANSAT78G1670' => 'cansat', 'CARHR003600' => 'chi', 'CARHR003610' => 'chi', 'CARHR006290' => 'chi', 'CARHR006430' => 'chi', 'CARHR124110' => 'chi', 'CARHR203870' => 'chi', 'CARHR203880' => 'chi', 'CARHR203890' => 'chi', 'CARHR276880' => 'chi', 'Carub.0001s0346' => 'cru', 'Carub.0001s0347' => 'cru', 'Carub.0001s0607' => 'cru', 'Carub.0003s2768' => 'cru', 'Carub.0003s2769' => 'cru', 'Carub.0004s1178' => 'cru', 'Carub.0006s0806' => 'cru', 'Carub.0006s0807' => 'cru', 'Carub.0006s0808' => 'cru', 'Carub.0008s0501' => 'cru', 'Carub.0008s2379' => 'cru', 'Ca_08655_v3' => 'car', 'Ca_08922_v3' => 'car', 'Ca_08923_v3' => 'car', 'Ca_09119_v3' => 'car', 'Ca_09703_v3' => 'car', 'Ca_09705_v3' => 'car', 'Ca_09835_v3' => 'car', 'Ca_26403_v3' => 'car', 'Ca_30719_v3' => 'car', 'CBR_g17958' => 'cbr', 'CBR_g40516' => 'cbr', 'Cc00_g05350' => 'ccan', 'Cc01_g18690' => 'ccan', 'Cc03_g04830' => 'ccan', 'Cc03_g04850' => 'ccan', 'CDE02G4469' => 'cde', 'CDE06G0883' => 'cde', 'CDE06G1295' => 'cde', 'CDE06G1390' => 'cde', 'CDE07G0584' => 'cde', 'CDE07G1084' => 'cde', 'CDE08G1259' => 'cde', 'Cfa002341' => 'cfa', 'Cfa024337' => 'cfa', 'Ciclev10004749m.g' => 'ccl', 'Ciclev10006127m.g' => 'ccl', 'Ciclev10019720m.g' => 'ccl', 'Ciclev10022652m.g' => 'ccl', 'CiPaw.01G190400' => 'cil', 'CiPaw.01G190500' => 'cil', 'CiPaw.02G116400' => 'cil', 'CiPaw.02G116500' => 'cil', 'CiPaw.04G183000' => 'cil', 'CiPaw.04G183300' => 'cil', 'ClCG05G004610' => 'cla', 'ClCG05G004620' => 'cla', 'ClCG06G006730' => 'cla', 'ClCG06G006740' => 'cla', 'ClCG11G003690' => 'cla', 'COL.COLO4_08276' => 'col', 'COL.COLO4_08277' => 'col', 'COL.COLO4_15787' => 'col', 'COL.COLO4_15789' => 'col', 'Cpa.g.c44815' => 'cpa', 'Cpa.g.sc52.144' => 'cpa', 'Cpa.g.sc58.46' => 'cpa', 'Cpa.g.sc58.47' => 'cpa', 'Cre08.g360900' => 'cre', 'CsaV3_2G013030' => 'csa', 'CsaV3_2G013050' => 'csa', 'CsaV3_2G015620' => 'csa', 'CsaV3_3G012590' => 'csa', 'CsaV3_3G012600' => 'csa', 'CSS0001641' => 'camsi', 'CSS0008310' => 'camsi', 'CSS0013011' => 'camsi', 'CSS0017147' => 'camsi', 'CSS0022970' => 'camsi', 'CSS0025655' => 'camsi', 'CSS0028665' => 'camsi', 'CSS0029117' => 'camsi', 'CSS0032024' => 'camsi', 'CSS0039681' => 'camsi', 'CSS0046516' => 'camsi', 'CSS0050307' => 'camsi', 'DCAR_005871' => 'dca', 'DCAR_007342' => 'dca', 'DCAR_024228' => 'dca', 'DCAR_027277' => 'dca', 'DCAR_030718' => 'dca', 'Dinv20287' => 'din', 'Dinv22461' => 'din', 'Dinv22464' => 'din', 'Dinv29912' => 'din', 'Dinv29913' => 'din', 'Dinv34580' => 'din', 'Dinv34582' => 'din', 'Dinv44632' => 'din', 'Duzib052G0266' => 'dzi', 'Duzib133G0907' => 'dzi', 'Duzib133G1034' => 'dzi', 'Duzib138G0207' => 'dzi', 'Duzib138G0491' => 'dzi', 'Duzib151G0812' => 'dzi', 'Duzib151G1166' => 'dzi', 'Duzib168G0192' => 'dzi', 'Duzib211G0077' => 'dzi', 'Duzib212G0429' => 'dzi', 'Duzib212G0472' => 'dzi', 'ECA233G2617' => 'eca', 'ECA236G4188' => 'eca', 'ECA240G0936' => 'eca', 'ECA240G1129' => 'eca', 'ECA247G0623' => 'eca', 'EL10Ac5g10451' => 'bvu', 'EL10Ac5g10453' => 'bvu', 'EL10Ac5g10894' => 'bvu', 'Eucgr.H00192' => 'egr', 'Eucgr.H00193' => 'egr', 'Eucgr.H00194' => 'egr', 'Eucgr.J01562' => 'egr', 'Eucgr.K03301' => 'egr', 'FAN02G0632' => 'fan', 'FAN05G5378' => 'fan', 'FAN09G3247' => 'fan', 'FAN12G0435' => 'fan', 'FAN12G2426' => 'fan', 'FAN14G1707' => 'fan', 'FAN14G4725' => 'fan', 'FAN15G2071' => 'fan', 'FAN17G3065' => 'fan', 'FAN19G1376' => 'fan', 'FAN20G0354' => 'fan', 'FAN20G2429' => 'fan', 'FAN20G2658' => 'fan', 'FAN24G2343' => 'fan', 'FAN27G2362' => 'fan', 'FAN28G1765' => 'fan', 'FvH4_1g16020' => 'fve', 'FvH4_2g04890' => 'fve', 'FvH4_2g22270' => 'fve', 'FvH4_4g02630' => 'fve', 'FvH4_4g02640' => 'fve', 'FvH4_6g02650' => 'fve', 'Glyma.02G140600' => 'gma', 'Glyma.03G159900' => 'gma', 'Glyma.05G234800' => 'gma', 'Glyma.07G269600' => 'gma', 'Glyma.08G042300' => 'gma', 'Glyma.10G033500' => 'gma', 'Glyma.10G185200' => 'gma', 'Glyma.17G004300' => 'gma', 'Glyma.19G161900' => 'gma', 'Glyma.20G205100' => 'gma', 'Glyma.20G205200' => 'gma', 'Gohir.A01G139101' => 'ghi', 'Gohir.A02G035600' => 'ghi', 'Gohir.A02G117901' => 'ghi', 'Gohir.A07G210100' => 'ghi', 'Gohir.A07G210200' => 'ghi', 'Gohir.A08G061100' => 'ghi', 'Gohir.A09G223000' => 'ghi', 'Gohir.A09G223100' => 'ghi', 'Gohir.A10G113900' => 'ghi', 'Gohir.A10G114000' => 'ghi', 'Gohir.D02G042300' => 'ghi', 'Gohir.D07G216100' => 'ghi', 'Gohir.D07G216200' => 'ghi', 'Gohir.D08G070400' => 'ghi', 'Gohir.D09G225000' => 'ghi', 'Gohir.D09G225100' => 'ghi', 'Gohir.D10G152300' => 'ghi', 'Gohir.D10G153200' => 'ghi', 'Gohir.D11G133701' => 'ghi', 'Gorai.004G074100' => 'gra', 'Gorai.005G046800' => 'gra', 'Gorai.006G246500' => 'gra', 'Gorai.006G246600' => 'gra', 'Gorai.007G142900' => 'gra', 'Gorai.011G171000' => 'gra', 'Gorai.011G171100' => 'gra', 'Gorai.013G104300' => 'gra', 'Gorai.013G104400' => 'gra', 'GSVIVG01000754001' => 'vvi', 'GSVIVG01000756001' => 'vvi', 'GSVIVG01010903001' => 'vvi', 'GSVIVG01017623001' => 'vvi', 'GSVIVG01018113001' => 'vvi', 'GSVIVG01018116001' => 'vvi', 'GSVIVG01018118001' => 'vvi', 'HanXRQChr03g0076211' => 'han', 'HanXRQChr03g0092431' => 'han', 'HanXRQChr03g0092441' => 'han', 'HanXRQChr03g0092591' => 'han', 'HanXRQChr03g0092671' => 'han', 'HanXRQChr03g0092681' => 'han', 'HanXRQChr03g0092691' => 'han', 'HanXRQChr03g0092701' => 'han', 'HanXRQChr03g0092721' => 'han', 'HanXRQChr03g0092731' => 'han', 'HanXRQChr04g0113681' => 'han', 'HanXRQChr10g0281371' => 'han', 'HanXRQChr11g0337141' => 'han', 'HanXRQChr13g0424521' => 'han', 'HanXRQChr13g0424531' => 'han', 'HanXRQChr13g0424541' => 'han', 'HanXRQChr16g0498221' => 'han', 'Haze_04377' => 'cav', 'Haze_11298' => 'cav', 'Haze_24547' => 'cav', 'Haze_24550' => 'cav', 'Haze_26587' => 'cav', 'Hma1.2p1_0650F.1_g195410' => 'hma', 'Hma1.2p1_0893F.1_g233470' => 'hma', 'HPP92_006508' => 'vpl', 'HPP92_024780' => 'vpl', 'Hund02688' => 'sun', 'Hund09380' => 'sun', 'Hund09381' => 'sun', 'Hund09832' => 'sun', 'Hund09833' => 'sun', 'Hund11351' => 'sun', 'Hund11513' => 'sun', 'Lalb_Chr06g0162591' => 'lal', 'Lalb_Chr06g0162601' => 'lal', 'Lalb_Chr06g0169321' => 'lal', 'Lalb_Chr09g0330951' => 'lal', 'Lalb_Chr16g0387631' => 'lal', 'Lalb_Chr21g0306241' => 'lal', 'Lalb_Chr25g0290051' => 'lal', 'Lalb_Chr25g0290061' => 'lal', 'Lalb_Chr25g0290071' => 'lal', 'Lj1g0003876' => 'lja', 'Lj1P1207T36' => 'lonja', 'Lj2C1156G12' => 'lonja', 'Lj3A793G39' => 'lonja', 'Lj3C580G2' => 'lonja', 'Lj3C780G2' => 'lonja', 'Lj3C780T4' => 'lonja', 'Lj3C793G9' => 'lonja', 'Lj4g0012960' => 'lja', 'Lj5g0021252' => 'lja', 'Lj5g0021484' => 'lja', 'Lj5g0024528' => 'lja', 'Lj6A399T12' => 'lonja', 'Lj6A656G65' => 'lonja', 'Lsat_1_v5_gn_3_125500' => 'lsa', 'Lsat_1_v5_gn_3_125540' => 'lsa', 'Lsat_1_v5_gn_5_72701' => 'lsa', 'Lsat_1_v5_gn_8_91560' => 'lsa', 'Lsat_1_v5_gn_9_9640' => 'lsa', 'Manes.01G200600' => 'mes', 'Manes.01G200700' => 'mes', 'Manes.03G168900' => 'mes', 'Manes.03G169000' => 'mes', 'Manes.05G085801' => 'mes', 'Manes.05G086200' => 'mes', 'Manes.15G036700' => 'mes', 'Manes.15G036900' => 'mes', 'Mapoly0004s0172' => 'mpo', 'Mapoly0023s0001' => 'mpo', 'Mapoly0142s0012' => 'mpo', 'MBI01_g32854_MAGBIO' => 'mbi', 'MBI11_g24427_MAGBIO' => 'mbi', 'MBI11_g47319_MAGBIO' => 'mbi', 'MCO01G433' => 'mco', 'MD00G1187800' => 'mdo', 'MD04G1226500' => 'mdo', 'MD05G1203900' => 'mdo', 'MD10G1191100' => 'mdo', 'MD12G1243500' => 'mdo', 'MD13G1207000' => 'mdo', 'MD13G1207100' => 'mdo', 'MD16G1208600' => 'mdo', 'Medtr1g050352' => 'mtr', 'Medtr1g070385' => 'mtr', 'Medtr1g070450' => 'mtr', 'Medtr1g075200' => 'mtr', 'Medtr1g075250' => 'mtr', 'Medtr1g075260' => 'mtr', 'Medtr1g475250' => 'mtr', 'Medtr4g075450' => 'mtr', 'Medtr7g096300' => 'mtr', 'Medtr8g105110' => 'mtr', 'MELO3C006470.2' => 'cme', 'MELO3C006471.2' => 'cme', 'MELO3C020772.2' => 'cme', 'MELO3C026780.2' => 'cme', 'MELO3C026781.2' => 'cme', 'Migut.D00390' => 'egut', 'Migut.G00435' => 'egut', 'Migut.G00436' => 'egut', 'Migut.G00718' => 'egut', 'MSTRG.21891' => 'ama', 'MSTRG.26910' => 'ama', 'MSTRG.4099' => 'ama', 'MSTRG.9925' => 'ama', 'Nitab4.5_0000165g0010' => 'nta', 'Nitab4.5_0000209g0180' => 'nta', 'Nitab4.5_0000244g0440' => 'nta', 'Nitab4.5_0000525g0220' => 'nta', 'Nitab4.5_0001597g0020' => 'nta', 'Nitab4.5_0001878g0040' => 'nta', 'Nitab4.5_0001878g0060' => 'nta', 'Nitab4.5_0002838g0100' => 'nta', 'Nitab4.5_0002838g0120' => 'nta', 'Nitab4.5_0004798g0030' => 'nta', 'Nitab4.5_0005420g0010' => 'nta', 'Nitab4.5_0005507g0010' => 'nta', 'Nitab4.5_0005574g0020' => 'nta', 'Nitab4.5_0005838g0010' => 'nta', 'Nitab4.5_0010580g0020' => 'nta', 'Nn1g02599' => 'nnu', 'Nn1g02608' => 'nnu', 'Nn3g17742' => 'nnu', 'Nn3g19534' => 'nnu', 'Nn3g19535' => 'nnu', 'Oeu008790.1' => 'oeu', 'Oeu008792.1' => 'oeu', 'Oeu032590.1' => 'oeu', 'Oeu035349.1' => 'oeu', 'Oeu049791.1' => 'oeu', 'Os01g0774500' => 'osa', 'Os03g0628800' => 'osa', 'Os03g0798600' => 'osa', 'Os05g0508800' => 'osa', 'Peaxi162Scf00036g02018' => 'pax', 'Peaxi162Scf00578g00032' => 'pax', 'Peaxi162Scf00578g00317' => 'pax', 'Peaxi162Scf00785g00114' => 'pax', 'Peaxi162Scf00813g00119' => 'pax', 'Peaxi162Scf00906g00227' => 'pax', 'PGR004G0875' => 'pgr', 'PGR004G2424' => 'pgr', 'PGR031G1239' => 'pgr', 'PGR031G2474' => 'pgr', 'PGR044G0423' => 'pgr', 'PGSC0003DMG400001128' => 'stu', 'PGSC0003DMG400007336' => 'stu', 'PGSC0003DMG400016318' => 'stu', 'PGSC0003DMG400016319' => 'stu', 'PGSC0003DMG400018074' => 'stu', 'Phvul.001G157700' => 'pvu', 'Phvul.002G148550' => 'pvu', 'Phvul.002G320200' => 'pvu', 'Phvul.003G089200' => 'pvu', 'Phvul.007G126000' => 'pvu', 'Phvul.007G126100' => 'pvu', 'Phvul.007G178000' => 'pvu', 'Phvul.007G178200' => 'pvu', 'Potri.002G043000' => 'ptr', 'Potri.002G043200' => 'ptr', 'Potri.003G123750' => 'ptr', 'Potri.005G055401' => 'ptr', 'Potri.005G219700' => 'ptr', 'Potri.005G220000' => 'ptr', 'Potri.008G161901' => 'ptr', 'Potri.008G162000' => 'ptr', 'Potri.008G162400' => 'ptr', 'Potri.010G076900' => 'ptr', 'Pp3c12_9180' => 'ppa', 'Pp3c13_19770' => 'ppa', 'Pp3c14_22950' => 'ppa', 'Pp3c16_12160' => 'ppa', 'Pp3c27_7820' => 'ppa', 'Pp3c2_3490' => 'ppa', 'Pp3c3_23700' => 'ppa', 'Pp3c3_36520' => 'ppa', 'Pp3c4_15250' => 'ppa', 'PRCOL_00007002' => 'pco', 'Prupe.1G030600' => 'ppe', 'Prupe.1G030700' => 'ppe', 'Prupe.6G345200' => 'ppe', 'Prupe.8G230300' => 'ppe', 'Prupe.8G230500' => 'ppe', 'Psat3g059600' => 'psa', 'Psat5g200920' => 'psa', 'Psat6g056440' => 'psa', 'Psat6g057360' => 'psa', 'Psat6g134120' => 'psa', 'Psat6g134160' => 'psa', 'Psat7g008640' => 'psa', 'Psat7g185240' => 'psa', 'PSO017G1330' => 'pso', 'PSO063G6097' => 'pso', 'PSO170G0835' => 'pso', 'PSO170G2499' => 'pso', 'PSO210G5058' => 'pso', 'PSO210G6154' => 'pso', 'PSO585G0031' => 'pso', 'PSO832G0264' => 'pso', 'PSO832G4288' => 'pso', 'QL03p027355' => 'qlo', 'QL03p027430' => 'qlo', 'QL04p081380' => 'qlo', 'QL06p015642' => 'qlo', 'QL06p015650' => 'qlo', 'QL06p015686' => 'qlo', 'QL12p042927' => 'qlo', 'QL93p1863_0035' => 'qlo', 'RcHm_v2.0_Chr3g0450581' => 'rch', 'RcHm_v2.0_Chr4g0390371' => 'rch', 'RcHm_v2.0_Chr4g0390381' => 'rch', 'RcHm_v2.0_Chr4g0390491' => 'rch', 'RcHm_v2.0_Chr4g0390501' => 'rch', 'RcHm_v2.0_Chr6g0289231' => 'rch', 'Rhsim04G0190400' => 'rsi', 'Rhsim04G0190500' => 'rsi', 'Rhsim04G0190600' => 'rsi', 'Rhsim13G0031400' => 'rsi', 'Rhsim13G0165600' => 'rsi', 'RhsimUnG0114600' => 'rsi', 'RhsimUnG0114700' => 'rsi', 'Sabra02G0034800' => 'sbr', 'Sabra02G0035100' => 'sbr', 'Sabra05G0168600' => 'sbr', 'Sabra05G0168800' => 'sbr', 'Sabra08G0123700' => 'sbr', 'Sabra10G0031900' => 'sbr', 'Sabra13G0039000' => 'sbr', 'SalBow2G0782' => 'sbo', 'SalBow2G1403' => 'sbo', 'SalBow4G0074' => 'sbo', 'SalBow4G2635' => 'sbo', 'SalBow5G3010' => 'sbo', 'Sc05g0000870' => 'sci', 'Sc05g0000890' => 'sci', 'Sc13g0005000' => 'sci', 'Sc13g0005030' => 'sci', 'Sc19g0003790' => 'sci', 'Sc19g0003800' => 'sci', 'Sed0003467' => 'sed', 'Sed0009355' => 'sed', 'Sed0009894' => 'sed', 'Sed0011972' => 'sed', 'Sed0021483' => 'sed', 'Sed0021750' => 'sed', 'Sed0026279' => 'sed', 'SEGI_05312' => 'sgi', 'SEGI_10112' => 'sgi', 'SEGI_15835' => 'sgi', 'SEGI_30386' => 'sgi', 'SEGI_34122' => 'sgi', 'SEGI_35063' => 'sgi', 'SGA_v2.0_scaffold101G29794' => 'sas', 'SGA_v2.0_scaffold1G00573' => 'sas', 'SGA_v2.0_scaffold79G25637' => 'sas', 'SGA_v2.0_scaffold88G27283' => 'sas', 'SGA_v2.0_scaffold88G27285' => 'sas', 'SGA_v2.0_scaffold88G27331' => 'sas', 'SHI09937' => 'shi', 'SMO119G0302' => 'smo', 'SMO137G0231' => 'smo', 'SMO367G1151' => 'smo', 'Solyc02g082000.3' => 'sly', 'Solyc06g031670.3' => 'sly', 'Solyc06g053810.3' => 'sly', 'Solyc07g025457.1' => 'sly', 'Solyc08g059740.1' => 'sly', 'Solyc08g059750.3' => 'sly', 'Solyc09g083370.3' => 'sly', 'Solyc12g038950.3' => 'sly', 'Sopen02g026630' => 'spe', 'Sopen06g018930' => 'spe', 'Sopen06g018940' => 'spe', 'Sopen08g009460' => 'spe', 'Sopen09g032290' => 'spe', 'Sp1g03080' => 'spa', 'Sp1g03090' => 'spa', 'Sp1g05480' => 'spa', 'Sp2g07860' => 'spa', 'Sp2g08430' => 'spa', 'Sp2g08440' => 'spa', 'Sp2g26200' => 'spa', 'Sp4g13170' => 'spa', 'Sp6g33840' => 'spa', 'SpUn1204_0010' => 'spa', 'TAR365G0908' => 'tar', 'TAR381G1270' => 'tar', 'TAR381G1651' => 'tar', 'TAR625G1131' => 'tar', 'TAR633G0962' => 'tar', 'TAR633G1729' => 'tar', 'TAR633G1864' => 'tar', 'TAR636G0221' => 'tar', 'TAR636G0314' => 'tar', 'TAR636G3202' => 'tar', 'THA.LOC104800805' => 'tha', 'THA.LOC104801096' => 'tha', 'THA.LOC104801555' => 'tha', 'THA.LOC104808491' => 'tha', 'THA.LOC104808595' => 'tha', 'THA.LOC104815985' => 'tha', 'THA.LOC104822250' => 'tha', 'THA.LOC104826071' => 'tha', 'Thecc.01G265200' => 'tca', 'Thecc.01G265300' => 'tca', 'Thecc.01G265700' => 'tca', 'Thecc.03G109100' => 'tca', 'Thecc.04G245900' => 'tca', 'Thecc.04G246000' => 'tca', 'Thhalv10003334m.g' => 'esa', 'Thhalv10005508m.g' => 'esa', 'Thhalv10005643m.g' => 'esa', 'Thhalv10007316m.g' => 'esa', 'Thhalv10009006m.g' => 'esa', 'Thhalv10009309m.g' => 'esa', 'Thhalv10014917m.g' => 'esa', 'Thhalv10014919m.g' => 'esa', 'Thhalv10015393m.g' => 'esa', 'Thhalv10016515m.g' => 'esa', 'Thhalv10029242m.g' => 'esa', 'TPR.G16654' => 'tpr', 'TPR.G20589' => 'tpr', 'TPR.G23029' => 'tpr', 'TPR.G27731' => 'tpr', 'TPR.G28889' => 'tpr', 'TPR.G28899' => 'tpr', 'TPR.G30846' => 'tpr', 'TPR.G5452' => 'tpr', 'TPR.G5713' => 'tpr', 'TPR.G9046' => 'tpr', 'TPR.G9061' => 'tpr', 'TWI09G1075' => 'twi', 'TWI12G0806' => 'twi', 'TWI18G0108' => 'twi', 'TWI53G1361' => 'twi', 'TWI73G0185' => 'twi', 'TWI73G0427' => 'twi', 'unitig_37.g12001' => 'ugi', 'unitig_747.g21660' => 'ugi', 'unitig_748.g7232' => 'ugi', 'unitig_748.g7315' => 'ugi', 'unitig_85.g27262' => 'ugi', 'unitig_92.g28220' => 'ugi', 'vmacro02632' => 'vma', 'vmacro08410' => 'vma', 'vmacro08411' => 'vma', 'vmacro15407' => 'vma', 'VMungo0251G3619' => 'vmu', 'VMungo0720G1204' => 'vmu', 'VMungo0720G1918' => 'vmu', 'VMungo0720G2387' => 'vmu', 'VMungo0720G2961' => 'vmu', 'VMungo1215G2154' => 'vmu', 'VMungo1383G2411' => 'vmu', 'Zm00001eb051130' => 'zma', 'Zm00001eb116830' => 'zma', 'Zm00001eb116850' => 'zma', 'Zm00001eb151740' => 'zma', 'Zm00001eb292360' => 'zma', 'Zm00001eb301640' => 'zma' ), 'gf_id' => 'HOM05D000856', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000856' ), 'data_identifier' => 'HOM05D000856', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000856', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p00010' => 'bna', 'A03p04160' => 'bna', 'A03p17160' => 'bna', 'A04p23370' => 'bna', 'A05p14860' => 'bna', 'A08p37020' => 'bna', 'A09p08050' => 'bna', 'A09p66800' => 'bna', 'A09p67940' => 'bna', 'A10p02680' => 'bna', 'A10p05320' => 'bna', 'Aa31LG1G20560' => 'aar', 'Aa31LG1G20610' => 'aar', 'Aa31LG1G7810' => 'aar', 'Aa31LG5G3590' => 'aar', 'Aa31LG5G6140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3819' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4683' => 'aag', 'Actinidia04480' => 'ach', 'Actinidia05466' => 'ach', 'Actinidia08445' => 'ach', 'Actinidia21170' => 'ach', 'Actinidia24812' => 'ach', 'Actinidia24951' => 'ach', 'Actinidia40088' => 'ach', 'Ah.02g111660' => 'amhyb', 'Ah.11g048900' => 'amhyb', 'Ah.11g049910' => 'amhyb', 'AL1G13870' => 'aly', 'AL1G13880' => 'aly', 'AL1G16760' => 'aly', 'AL390U10020' => 'aly', 'AL4G25520' => 'aly', 'AL6G19890' => 'aly', 'AL6G19900' => 'aly', 'AL6G19910' => 'aly', 'AL8G40100' => 'aly', 'Aqoxy2G03562' => 'aox', 'Aqoxy5G00316' => 'aox', 'Aqoxy5G00926' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1628KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1H403S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2FU6SJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.882I6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8YRY2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YN1SN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AF70II' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZA8L1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F916KL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHRD8H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KTZ8QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S22EMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8M29T' => 'arhy', 'AT1G04270' => 'ath', 'AT1G04280' => 'ath', 'AT1G06750' => 'ath', 'AT1G33850' => 'ath', 'AT2G30630' => 'ath', 'AT5G09490' => 'ath', 'AT5G09500' => 'ath', 'AT5G09510' => 'ath', 'AT5G43640' => 'ath', 'AT5G63070' => 'ath', 'ATR0605G315' => 'atr', 'Atru.chr11.175' => 'acertr', 'Atru.chr11.653' => 'acertr', 'Atru.chr3.1616' => 'acertr', 'Atru.chr4.2230' => 'acertr', 'Atru.chr4.2232' => 'acertr', 'Atru.chr5.1598' => 'acertr', 'Atru.chr5.1600' => 'acertr', 'Atru.chr5.2188' => 'acertr', 'AUR62008326' => 'cqu', 'AUR62011922' => 'cqu', 'AUR62011924' => 'cqu', 'AUR62021771' => 'cqu', 'AUR62032237' => 'cqu', 'AUR62032240' => 'cqu', 'BcaB01g05572' => 'bca', 'BcaB02g10337' => 'bca', 'BcaB04g19944' => 'bca', 'BcaB05g21548' => 'bca', 'BcaB05g21549' => 'bca', 'BcaB05g23227' => 'bca', 'BcaB06g26256' => 'bca', 'BcaB06g26257' => 'bca', 'BcaB06g28379' => 'bca', 'BcaC02g11159' => 'bca', 'BcaC03g13258' => 'bca', 'BcaC03g13259' => 'bca', 'BcaC05g24456' => 'bca', 'BcaC05g24457' => 'bca', 'BcaC07g36922' => 'bca', 'BcaC07g36923' => 'bca', 'BcaC07g42050' => 'bca', 'BcaC07g42176' => 'bca', 'BcaC07g42195' => 'bca', 'BcaC07g42196' => 'bca', 'BcaNung06674' => 'bca', 'BolC2t06351H' => 'bol', 'BolC2t06352H' => 'bol', 'BolC3t12993H' => 'bol', 'BolC4t23525H' => 'bol', 'BolC4t27475H' => 'bol', 'BolC5t29025H' => 'bol', 'BolC5t29026H' => 'bol', 'BolC8t46898H' => 'bol', 'BolC8t46899H' => 'bol', 'BolC8t52630H' => 'bol', 'BolC8t52765H' => 'bol', 'BolC9t53824H' => 'bol', 'BraA03t09760Z' => 'bra', 'BraA03t10990Z' => 'bra', 'BraA05t20413Z' => 'bra', 'BraA08t35602Z' => 'bra', 'BraA09t36458Z' => 'bra', 'BraA09t42018Z' => 'bra', 'BraA09t42129Z' => 'bra', 'BraA10t42536Z' => 'bra', 'BraA10t42537Z' => 'bra', 'C01p10690' => 'bna', 'C02p03890' => 'bna', 'C02p03900' => 'bna', 'C03p04620' => 'bna', 'C04p19870' => 'bna', 'C04p59670' => 'bna', 'C05p02460' => 'bna', 'C05p02470' => 'bna', 'C08p00980' => 'bna', 'C08p00990' => 'bna', 'C08p51030' => 'bna', 'C08p52360' => 'bna', 'C09p09120' => 'bna', 'CAN.G19.15' => 'can', 'CAN.G251.10' => 'can', 'CAN.G251.9' => 'can', 'CAN.G398.24' => 'can', 'CAN.G410.32' => 'can', 'CAN.G881.2' => 'can', 'CANSAT01G3025' => 'cansat', 'CANSAT78G1211' => 'cansat', 'CANSAT78G1218' => 'cansat', 'CANSAT78G1521' => 'cansat', 'CANSAT78G1670' => 'cansat', 'CARHR003600' => 'chi', 'CARHR003610' => 'chi', 'CARHR006290' => 'chi', 'CARHR006430' => 'chi', 'CARHR124110' => 'chi', 'CARHR203870' => 'chi', 'CARHR203880' => 'chi', 'CARHR203890' => 'chi', 'CARHR276880' => 'chi', 'Carub.0001s0346' => 'cru', 'Carub.0001s0347' => 'cru', 'Carub.0001s0607' => 'cru', 'Carub.0003s2768' => 'cru', 'Carub.0003s2769' => 'cru', 'Carub.0004s1178' => 'cru', 'Carub.0006s0806' => 'cru', 'Carub.0006s0807' => 'cru', 'Carub.0006s0808' => 'cru', 'Carub.0008s0501' => 'cru', 'Carub.0008s2379' => 'cru', 'Ca_08655_v3' => 'car', 'Ca_08922_v3' => 'car', 'Ca_08923_v3' => 'car', 'Ca_09119_v3' => 'car', 'Ca_09703_v3' => 'car', 'Ca_09705_v3' => 'car', 'Ca_09835_v3' => 'car', 'Ca_26403_v3' => 'car', 'Ca_30719_v3' => 'car', 'CBR_g17958' => 'cbr', 'CBR_g40516' => 'cbr', 'Cc00_g05350' => 'ccan', 'Cc01_g18690' => 'ccan', 'Cc03_g04830' => 'ccan', 'Cc03_g04850' => 'ccan', 'CDE02G4469' => 'cde', 'CDE06G0883' => 'cde', 'CDE06G1295' => 'cde', 'CDE06G1390' => 'cde', 'CDE07G0584' => 'cde', 'CDE07G1084' => 'cde', 'CDE08G1259' => 'cde', 'Cfa002341' => 'cfa', 'Cfa024337' => 'cfa', 'Ciclev10004749m.g' => 'ccl', 'Ciclev10006127m.g' => 'ccl', 'Ciclev10019720m.g' => 'ccl', 'Ciclev10022652m.g' => 'ccl', 'CiPaw.01G190400' => 'cil', 'CiPaw.01G190500' => 'cil', 'CiPaw.02G116400' => 'cil', 'CiPaw.02G116500' => 'cil', 'CiPaw.04G183000' => 'cil', 'CiPaw.04G183300' => 'cil', 'ClCG05G004610' => 'cla', 'ClCG05G004620' => 'cla', 'ClCG06G006730' => 'cla', 'ClCG06G006740' => 'cla', 'ClCG11G003690' => 'cla', 'COL.COLO4_08276' => 'col', 'COL.COLO4_08277' => 'col', 'COL.COLO4_15787' => 'col', 'COL.COLO4_15789' => 'col', 'Cpa.g.c44815' => 'cpa', 'Cpa.g.sc52.144' => 'cpa', 'Cpa.g.sc58.46' => 'cpa', 'Cpa.g.sc58.47' => 'cpa', 'Cre08.g360900' => 'cre', 'CsaV3_2G013030' => 'csa', 'CsaV3_2G013050' => 'csa', 'CsaV3_2G015620' => 'csa', 'CsaV3_3G012590' => 'csa', 'CsaV3_3G012600' => 'csa', 'CSS0001641' => 'camsi', 'CSS0008310' => 'camsi', 'CSS0013011' => 'camsi', 'CSS0017147' => 'camsi', 'CSS0022970' => 'camsi', 'CSS0025655' => 'camsi', 'CSS0028665' => 'camsi', 'CSS0029117' => 'camsi', 'CSS0032024' => 'camsi', 'CSS0039681' => 'camsi', 'CSS0046516' => 'camsi', 'CSS0050307' => 'camsi', 'DCAR_005871' => 'dca', 'DCAR_007342' => 'dca', 'DCAR_024228' => 'dca', 'DCAR_027277' => 'dca', 'DCAR_030718' => 'dca', 'Dinv20287' => 'din', 'Dinv22461' => 'din', 'Dinv22464' => 'din', 'Dinv29912' => 'din', 'Dinv29913' => 'din', 'Dinv34580' => 'din', 'Dinv34582' => 'din', 'Dinv44632' => 'din', 'Duzib052G0266' => 'dzi', 'Duzib133G0907' => 'dzi', 'Duzib133G1034' => 'dzi', 'Duzib138G0207' => 'dzi', 'Duzib138G0491' => 'dzi', 'Duzib151G0812' => 'dzi', 'Duzib151G1166' => 'dzi', 'Duzib168G0192' => 'dzi', 'Duzib211G0077' => 'dzi', 'Duzib212G0429' => 'dzi', 'Duzib212G0472' => 'dzi', 'ECA233G2617' => 'eca', 'ECA236G4188' => 'eca', 'ECA240G0936' => 'eca', 'ECA240G1129' => 'eca', 'ECA247G0623' => 'eca', 'EL10Ac5g10451' => 'bvu', 'EL10Ac5g10453' => 'bvu', 'EL10Ac5g10894' => 'bvu', 'Eucgr.H00192' => 'egr', 'Eucgr.H00193' => 'egr', 'Eucgr.H00194' => 'egr', 'Eucgr.J01562' => 'egr', 'Eucgr.K03301' => 'egr', 'FAN02G0632' => 'fan', 'FAN05G5378' => 'fan', 'FAN09G3247' => 'fan', 'FAN12G0435' => 'fan', 'FAN12G2426' => 'fan', 'FAN14G1707' => 'fan', 'FAN14G4725' => 'fan', 'FAN15G2071' => 'fan', 'FAN17G3065' => 'fan', 'FAN19G1376' => 'fan', 'FAN20G0354' => 'fan', 'FAN20G2429' => 'fan', 'FAN20G2658' => 'fan', 'FAN24G2343' => 'fan', 'FAN27G2362' => 'fan', 'FAN28G1765' => 'fan', 'FvH4_1g16020' => 'fve', 'FvH4_2g04890' => 'fve', 'FvH4_2g22270' => 'fve', 'FvH4_4g02630' => 'fve', 'FvH4_4g02640' => 'fve', 'FvH4_6g02650' => 'fve', 'Glyma.02G140600' => 'gma', 'Glyma.03G159900' => 'gma', 'Glyma.05G234800' => 'gma', 'Glyma.07G269600' => 'gma', 'Glyma.08G042300' => 'gma', 'Glyma.10G033500' => 'gma', 'Glyma.10G185200' => 'gma', 'Glyma.17G004300' => 'gma', 'Glyma.19G161900' => 'gma', 'Glyma.20G205100' => 'gma', 'Glyma.20G205200' => 'gma', 'Gohir.A01G139101' => 'ghi', 'Gohir.A02G035600' => 'ghi', 'Gohir.A02G117901' => 'ghi', 'Gohir.A07G210100' => 'ghi', 'Gohir.A07G210200' => 'ghi', 'Gohir.A08G061100' => 'ghi', 'Gohir.A09G223000' => 'ghi', 'Gohir.A09G223100' => 'ghi', 'Gohir.A10G113900' => 'ghi', 'Gohir.A10G114000' => 'ghi', 'Gohir.D02G042300' => 'ghi', 'Gohir.D07G216100' => 'ghi', 'Gohir.D07G216200' => 'ghi', 'Gohir.D08G070400' => 'ghi', 'Gohir.D09G225000' => 'ghi', 'Gohir.D09G225100' => 'ghi', 'Gohir.D10G152300' => 'ghi', 'Gohir.D10G153200' => 'ghi', 'Gohir.D11G133701' => 'ghi', 'Gorai.004G074100' => 'gra', 'Gorai.005G046800' => 'gra', 'Gorai.006G246500' => 'gra', 'Gorai.006G246600' => 'gra', 'Gorai.007G142900' => 'gra', 'Gorai.011G171000' => 'gra', 'Gorai.011G171100' => 'gra', 'Gorai.013G104300' => 'gra', 'Gorai.013G104400' => 'gra', 'GSVIVG01000754001' => 'vvi', 'GSVIVG01000756001' => 'vvi', 'GSVIVG01010903001' => 'vvi', 'GSVIVG01017623001' => 'vvi', 'GSVIVG01018113001' => 'vvi', 'GSVIVG01018116001' => 'vvi', 'GSVIVG01018118001' => 'vvi', 'HanXRQChr03g0076211' => 'han', 'HanXRQChr03g0092431' => 'han', 'HanXRQChr03g0092441' => 'han', 'HanXRQChr03g0092591' => 'han', 'HanXRQChr03g0092671' => 'han', 'HanXRQChr03g0092681' => 'han', 'HanXRQChr03g0092691' => 'han', 'HanXRQChr03g0092701' => 'han', 'HanXRQChr03g0092721' => 'han', 'HanXRQChr03g0092731' => 'han', 'HanXRQChr04g0113681' => 'han', 'HanXRQChr10g0281371' => 'han', 'HanXRQChr11g0337141' => 'han', 'HanXRQChr13g0424521' => 'han', 'HanXRQChr13g0424531' => 'han', 'HanXRQChr13g0424541' => 'han', 'HanXRQChr16g0498221' => 'han', 'Haze_04377' => 'cav', 'Haze_11298' => 'cav', 'Haze_24547' => 'cav', 'Haze_24550' => 'cav', 'Haze_26587' => 'cav', 'Hma1.2p1_0650F.1_g195410' => 'hma', 'Hma1.2p1_0893F.1_g233470' => 'hma', 'HPP92_006508' => 'vpl', 'HPP92_024780' => 'vpl', 'Hund02688' => 'sun', 'Hund09380' => 'sun', 'Hund09381' => 'sun', 'Hund09832' => 'sun', 'Hund09833' => 'sun', 'Hund11351' => 'sun', 'Hund11513' => 'sun', 'Lalb_Chr06g0162591' => 'lal', 'Lalb_Chr06g0162601' => 'lal', 'Lalb_Chr06g0169321' => 'lal', 'Lalb_Chr09g0330951' => 'lal', 'Lalb_Chr16g0387631' => 'lal', 'Lalb_Chr21g0306241' => 'lal', 'Lalb_Chr25g0290051' => 'lal', 'Lalb_Chr25g0290061' => 'lal', 'Lalb_Chr25g0290071' => 'lal', 'Lj1g0003876' => 'lja', 'Lj1P1207T36' => 'lonja', 'Lj2C1156G12' => 'lonja', 'Lj3A793G39' => 'lonja', 'Lj3C580G2' => 'lonja', 'Lj3C780G2' => 'lonja', 'Lj3C780T4' => 'lonja', 'Lj3C793G9' => 'lonja', 'Lj4g0012960' => 'lja', 'Lj5g0021252' => 'lja', 'Lj5g0021484' => 'lja', 'Lj5g0024528' => 'lja', 'Lj6A399T12' => 'lonja', 'Lj6A656G65' => 'lonja', 'Lsat_1_v5_gn_3_125500' => 'lsa', 'Lsat_1_v5_gn_3_125540' => 'lsa', 'Lsat_1_v5_gn_5_72701' => 'lsa', 'Lsat_1_v5_gn_8_91560' => 'lsa', 'Lsat_1_v5_gn_9_9640' => 'lsa', 'Manes.01G200600' => 'mes', 'Manes.01G200700' => 'mes', 'Manes.03G168900' => 'mes', 'Manes.03G169000' => 'mes', 'Manes.05G085801' => 'mes', 'Manes.05G086200' => 'mes', 'Manes.15G036700' => 'mes', 'Manes.15G036900' => 'mes', 'Mapoly0004s0172' => 'mpo', 'Mapoly0023s0001' => 'mpo', 'Mapoly0142s0012' => 'mpo', 'MBI01_g32854_MAGBIO' => 'mbi', 'MBI11_g24427_MAGBIO' => 'mbi', 'MBI11_g47319_MAGBIO' => 'mbi', 'MCO01G433' => 'mco', 'MD00G1187800' => 'mdo', 'MD04G1226500' => 'mdo', 'MD05G1203900' => 'mdo', 'MD10G1191100' => 'mdo', 'MD12G1243500' => 'mdo', 'MD13G1207000' => 'mdo', 'MD13G1207100' => 'mdo', 'MD16G1208600' => 'mdo', 'Medtr1g050352' => 'mtr', 'Medtr1g070385' => 'mtr', 'Medtr1g070450' => 'mtr', 'Medtr1g075200' => 'mtr', 'Medtr1g075250' => 'mtr', 'Medtr1g075260' => 'mtr', 'Medtr1g475250' => 'mtr', 'Medtr4g075450' => 'mtr', 'Medtr7g096300' => 'mtr', 'Medtr8g105110' => 'mtr', 'MELO3C006470.2' => 'cme', 'MELO3C006471.2' => 'cme', 'MELO3C020772.2' => 'cme', 'MELO3C026780.2' => 'cme', 'MELO3C026781.2' => 'cme', 'Migut.D00390' => 'egut', 'Migut.G00435' => 'egut', 'Migut.G00436' => 'egut', 'Migut.G00718' => 'egut', 'MSTRG.21891' => 'ama', 'MSTRG.26910' => 'ama', 'MSTRG.4099' => 'ama', 'MSTRG.9925' => 'ama', 'Nitab4.5_0000165g0010' => 'nta', 'Nitab4.5_0000209g0180' => 'nta', 'Nitab4.5_0000244g0440' => 'nta', 'Nitab4.5_0000525g0220' => 'nta', 'Nitab4.5_0001597g0020' => 'nta', 'Nitab4.5_0001878g0040' => 'nta', 'Nitab4.5_0001878g0060' => 'nta', 'Nitab4.5_0002838g0100' => 'nta', 'Nitab4.5_0002838g0120' => 'nta', 'Nitab4.5_0004798g0030' => 'nta', 'Nitab4.5_0005420g0010' => 'nta', 'Nitab4.5_0005507g0010' => 'nta', 'Nitab4.5_0005574g0020' => 'nta', 'Nitab4.5_0005838g0010' => 'nta', 'Nitab4.5_0010580g0020' => 'nta', 'Nn1g02599' => 'nnu', 'Nn1g02608' => 'nnu', 'Nn3g17742' => 'nnu', 'Nn3g19534' => 'nnu', 'Nn3g19535' => 'nnu', 'Oeu008790.1' => 'oeu', 'Oeu008792.1' => 'oeu', 'Oeu032590.1' => 'oeu', 'Oeu035349.1' => 'oeu', 'Oeu049791.1' => 'oeu', 'Os01g0774500' => 'osa', 'Os03g0628800' => 'osa', 'Os03g0798600' => 'osa', 'Os05g0508800' => 'osa', 'Peaxi162Scf00036g02018' => 'pax', 'Peaxi162Scf00578g00032' => 'pax', 'Peaxi162Scf00578g00317' => 'pax', 'Peaxi162Scf00785g00114' => 'pax', 'Peaxi162Scf00813g00119' => 'pax', 'Peaxi162Scf00906g00227' => 'pax', 'PGR004G0875' => 'pgr', 'PGR004G2424' => 'pgr', 'PGR031G1239' => 'pgr', 'PGR031G2474' => 'pgr', 'PGR044G0423' => 'pgr', 'PGSC0003DMG400001128' => 'stu', 'PGSC0003DMG400007336' => 'stu', 'PGSC0003DMG400016318' => 'stu', 'PGSC0003DMG400016319' => 'stu', 'PGSC0003DMG400018074' => 'stu', 'Phvul.001G157700' => 'pvu', 'Phvul.002G148550' => 'pvu', 'Phvul.002G320200' => 'pvu', 'Phvul.003G089200' => 'pvu', 'Phvul.007G126000' => 'pvu', 'Phvul.007G126100' => 'pvu', 'Phvul.007G178000' => 'pvu', 'Phvul.007G178200' => 'pvu', 'Potri.002G043000' => 'ptr', 'Potri.002G043200' => 'ptr', 'Potri.003G123750' => 'ptr', 'Potri.005G055401' => 'ptr', 'Potri.005G219700' => 'ptr', 'Potri.005G220000' => 'ptr', 'Potri.008G161901' => 'ptr', 'Potri.008G162000' => 'ptr', 'Potri.008G162400' => 'ptr', 'Potri.010G076900' => 'ptr', 'Pp3c12_9180' => 'ppa', 'Pp3c13_19770' => 'ppa', 'Pp3c14_22950' => 'ppa', 'Pp3c16_12160' => 'ppa', 'Pp3c27_7820' => 'ppa', 'Pp3c2_3490' => 'ppa', 'Pp3c3_23700' => 'ppa', 'Pp3c3_36520' => 'ppa', 'Pp3c4_15250' => 'ppa', 'PRCOL_00007002' => 'pco', 'Prupe.1G030600' => 'ppe', 'Prupe.1G030700' => 'ppe', 'Prupe.6G345200' => 'ppe', 'Prupe.8G230300' => 'ppe', 'Prupe.8G230500' => 'ppe', 'Psat3g059600' => 'psa', 'Psat5g200920' => 'psa', 'Psat6g056440' => 'psa', 'Psat6g057360' => 'psa', 'Psat6g134120' => 'psa', 'Psat6g134160' => 'psa', 'Psat7g008640' => 'psa', 'Psat7g185240' => 'psa', 'PSO017G1330' => 'pso', 'PSO063G6097' => 'pso', 'PSO170G0835' => 'pso', 'PSO170G2499' => 'pso', 'PSO210G5058' => 'pso', 'PSO210G6154' => 'pso', 'PSO585G0031' => 'pso', 'PSO832G0264' => 'pso', 'PSO832G4288' => 'pso', 'QL03p027355' => 'qlo', 'QL03p027430' => 'qlo', 'QL04p081380' => 'qlo', 'QL06p015642' => 'qlo', 'QL06p015650' => 'qlo', 'QL06p015686' => 'qlo', 'QL12p042927' => 'qlo', 'QL93p1863_0035' => 'qlo', 'RcHm_v2.0_Chr3g0450581' => 'rch', 'RcHm_v2.0_Chr4g0390371' => 'rch', 'RcHm_v2.0_Chr4g0390381' => 'rch', 'RcHm_v2.0_Chr4g0390491' => 'rch', 'RcHm_v2.0_Chr4g0390501' => 'rch', 'RcHm_v2.0_Chr6g0289231' => 'rch', 'Rhsim04G0190400' => 'rsi', 'Rhsim04G0190500' => 'rsi', 'Rhsim04G0190600' => 'rsi', 'Rhsim13G0031400' => 'rsi', 'Rhsim13G0165600' => 'rsi', 'RhsimUnG0114600' => 'rsi', 'RhsimUnG0114700' => 'rsi', 'Sabra02G0034800' => 'sbr', 'Sabra02G0035100' => 'sbr', 'Sabra05G0168600' => 'sbr', 'Sabra05G0168800' => 'sbr', 'Sabra08G0123700' => 'sbr', 'Sabra10G0031900' => 'sbr', 'Sabra13G0039000' => 'sbr', 'SalBow2G0782' => 'sbo', 'SalBow2G1403' => 'sbo', 'SalBow4G0074' => 'sbo', 'SalBow4G2635' => 'sbo', 'SalBow5G3010' => 'sbo', 'Sc05g0000870' => 'sci', 'Sc05g0000890' => 'sci', 'Sc13g0005000' => 'sci', 'Sc13g0005030' => 'sci', 'Sc19g0003790' => 'sci', 'Sc19g0003800' => 'sci', 'Sed0003467' => 'sed', 'Sed0009355' => 'sed', 'Sed0009894' => 'sed', 'Sed0011972' => 'sed', 'Sed0021483' => 'sed', 'Sed0021750' => 'sed', 'Sed0026279' => 'sed', 'SEGI_05312' => 'sgi', 'SEGI_10112' => 'sgi', 'SEGI_15835' => 'sgi', 'SEGI_30386' => 'sgi', 'SEGI_34122' => 'sgi', 'SEGI_35063' => 'sgi', 'SGA_v2.0_scaffold101G29794' => 'sas', 'SGA_v2.0_scaffold1G00573' => 'sas', 'SGA_v2.0_scaffold79G25637' => 'sas', 'SGA_v2.0_scaffold88G27283' => 'sas', 'SGA_v2.0_scaffold88G27285' => 'sas', 'SGA_v2.0_scaffold88G27331' => 'sas', 'SHI09937' => 'shi', 'SMO119G0302' => 'smo', 'SMO137G0231' => 'smo', 'SMO367G1151' => 'smo', 'Solyc02g082000.3' => 'sly', 'Solyc06g031670.3' => 'sly', 'Solyc06g053810.3' => 'sly', 'Solyc07g025457.1' => 'sly', 'Solyc08g059740.1' => 'sly', 'Solyc08g059750.3' => 'sly', 'Solyc09g083370.3' => 'sly', 'Solyc12g038950.3' => 'sly', 'Sopen02g026630' => 'spe', 'Sopen06g018930' => 'spe', 'Sopen06g018940' => 'spe', 'Sopen08g009460' => 'spe', 'Sopen09g032290' => 'spe', 'Sp1g03080' => 'spa', 'Sp1g03090' => 'spa', 'Sp1g05480' => 'spa', 'Sp2g07860' => 'spa', 'Sp2g08430' => 'spa', 'Sp2g08440' => 'spa', 'Sp2g26200' => 'spa', 'Sp4g13170' => 'spa', 'Sp6g33840' => 'spa', 'SpUn1204_0010' => 'spa', 'TAR365G0908' => 'tar', 'TAR381G1270' => 'tar', 'TAR381G1651' => 'tar', 'TAR625G1131' => 'tar', 'TAR633G0962' => 'tar', 'TAR633G1729' => 'tar', 'TAR633G1864' => 'tar', 'TAR636G0221' => 'tar', 'TAR636G0314' => 'tar', 'TAR636G3202' => 'tar', 'THA.LOC104800805' => 'tha', 'THA.LOC104801096' => 'tha', 'THA.LOC104801555' => 'tha', 'THA.LOC104808491' => 'tha', 'THA.LOC104808595' => 'tha', 'THA.LOC104815985' => 'tha', 'THA.LOC104822250' => 'tha', 'THA.LOC104826071' => 'tha', 'Thecc.01G265200' => 'tca', 'Thecc.01G265300' => 'tca', 'Thecc.01G265700' => 'tca', 'Thecc.03G109100' => 'tca', 'Thecc.04G245900' => 'tca', 'Thecc.04G246000' => 'tca', 'Thhalv10003334m.g' => 'esa', 'Thhalv10005508m.g' => 'esa', 'Thhalv10005643m.g' => 'esa', 'Thhalv10007316m.g' => 'esa', 'Thhalv10009006m.g' => 'esa', 'Thhalv10009309m.g' => 'esa', 'Thhalv10014917m.g' => 'esa', 'Thhalv10014919m.g' => 'esa', 'Thhalv10015393m.g' => 'esa', 'Thhalv10016515m.g' => 'esa', 'Thhalv10029242m.g' => 'esa', 'TPR.G16654' => 'tpr', 'TPR.G20589' => 'tpr', 'TPR.G23029' => 'tpr', 'TPR.G27731' => 'tpr', 'TPR.G28889' => 'tpr', 'TPR.G28899' => 'tpr', 'TPR.G30846' => 'tpr', 'TPR.G5452' => 'tpr', 'TPR.G5713' => 'tpr', 'TPR.G9046' => 'tpr', 'TPR.G9061' => 'tpr', 'TWI09G1075' => 'twi', 'TWI12G0806' => 'twi', 'TWI18G0108' => 'twi', 'TWI53G1361' => 'twi', 'TWI73G0185' => 'twi', 'TWI73G0427' => 'twi', 'unitig_37.g12001' => 'ugi', 'unitig_747.g21660' => 'ugi', 'unitig_748.g7232' => 'ugi', 'unitig_748.g7315' => 'ugi', 'unitig_85.g27262' => 'ugi', 'unitig_92.g28220' => 'ugi', 'vmacro02632' => 'vma', 'vmacro08410' => 'vma', 'vmacro08411' => 'vma', 'vmacro15407' => 'vma', 'VMungo0251G3619' => 'vmu', 'VMungo0720G1204' => 'vmu', 'VMungo0720G1918' => 'vmu', 'VMungo0720G2387' => 'vmu', 'VMungo0720G2961' => 'vmu', 'VMungo1215G2154' => 'vmu', 'VMungo1383G2411' => 'vmu', 'Zm00001eb051130' => 'zma', 'Zm00001eb116830' => 'zma', 'Zm00001eb116850' => 'zma', 'Zm00001eb151740' => 'zma', 'Zm00001eb292360' => 'zma', 'Zm00001eb301640' => 'zma' ) $gf_id = 'HOM05D000856' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000856' ) $data_identifier = 'HOM05D000856' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 13, 'ath' => (int) 10, 'atr' => (int) 1, 'acertr' => (int) 8, 'cqu' => (int) 6, 'bca' => (int) 21, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 11, 'car' => (int) 9, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 8, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 5, 'fan' => (int) 16, 'fve' => (int) 6, 'gma' => (int) 11, 'ghi' => (int) 19, 'gra' => (int) 9, 'vvi' => (int) 7, 'han' => (int) 17, 'cav' => (int) 5, 'hma' => (int) 2, 'vpl' => (int) 2, 'sun' => (int) 7, 'lal' => (int) 9, 'lja' => (int) 5, 'lonja' => (int) 9, 'lsa' => (int) 5, 'mes' => (int) 8, 'mpo' => (int) 3, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 10, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 15, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 9, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 9, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 6, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 5, 'spa' => (int) 10, 'tar' => (int) 10, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 11, 'tpr' => (int) 11, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 4, 'vmu' => (int) 7, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb301640' $species_info = array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ) $local_species = 'camsi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000856', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p00010' => 'bna', 'A03p04160' => 'bna', 'A03p17160' => 'bna', 'A04p23370' => 'bna', 'A05p14860' => 'bna', 'A08p37020' => 'bna', 'A09p08050' => 'bna', 'A09p66800' => 'bna', 'A09p67940' => 'bna', 'A10p02680' => 'bna', 'A10p05320' => 'bna', 'Aa31LG1G20560' => 'aar', 'Aa31LG1G20610' => 'aar', 'Aa31LG1G7810' => 'aar', 'Aa31LG5G3590' => 'aar', 'Aa31LG5G6140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3819' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4683' => 'aag', 'Actinidia04480' => 'ach', 'Actinidia05466' => 'ach', 'Actinidia08445' => 'ach', 'Actinidia21170' => 'ach', 'Actinidia24812' => 'ach', 'Actinidia24951' => 'ach', 'Actinidia40088' => 'ach', 'Ah.02g111660' => 'amhyb', 'Ah.11g048900' => 'amhyb', 'Ah.11g049910' => 'amhyb', 'AL1G13870' => 'aly', 'AL1G13880' => 'aly', 'AL1G16760' => 'aly', 'AL390U10020' => 'aly', 'AL4G25520' => 'aly', 'AL6G19890' => 'aly', 'AL6G19900' => 'aly', 'AL6G19910' => 'aly', 'AL8G40100' => 'aly', 'Aqoxy2G03562' => 'aox', 'Aqoxy5G00316' => 'aox', 'Aqoxy5G00926' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1628KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1H403S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2FU6SJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.882I6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8YRY2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YN1SN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AF70II' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZA8L1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F916KL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHRD8H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KTZ8QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S22EMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8M29T' => 'arhy', 'AT1G04270' => 'ath', 'AT1G04280' => 'ath', 'AT1G06750' => 'ath', 'AT1G33850' => 'ath', 'AT2G30630' => 'ath', 'AT5G09490' => 'ath', 'AT5G09500' => 'ath', 'AT5G09510' => 'ath', 'AT5G43640' => 'ath', 'AT5G63070' => 'ath', 'ATR0605G315' => 'atr', 'Atru.chr11.175' => 'acertr', 'Atru.chr11.653' => 'acertr', 'Atru.chr3.1616' => 'acertr', 'Atru.chr4.2230' => 'acertr', 'Atru.chr4.2232' => 'acertr', 'Atru.chr5.1598' => 'acertr', 'Atru.chr5.1600' => 'acertr', 'Atru.chr5.2188' => 'acertr', 'AUR62008326' => 'cqu', 'AUR62011922' => 'cqu', 'AUR62011924' => 'cqu', 'AUR62021771' => 'cqu', 'AUR62032237' => 'cqu', 'AUR62032240' => 'cqu', 'BcaB01g05572' => 'bca', 'BcaB02g10337' => 'bca', 'BcaB04g19944' => 'bca', 'BcaB05g21548' => 'bca', 'BcaB05g21549' => 'bca', 'BcaB05g23227' => 'bca', 'BcaB06g26256' => 'bca', 'BcaB06g26257' => 'bca', 'BcaB06g28379' => 'bca', 'BcaC02g11159' => 'bca', 'BcaC03g13258' => 'bca', 'BcaC03g13259' => 'bca', 'BcaC05g24456' => 'bca', 'BcaC05g24457' => 'bca', 'BcaC07g36922' => 'bca', 'BcaC07g36923' => 'bca', 'BcaC07g42050' => 'bca', 'BcaC07g42176' => 'bca', 'BcaC07g42195' => 'bca', 'BcaC07g42196' => 'bca', 'BcaNung06674' => 'bca', 'BolC2t06351H' => 'bol', 'BolC2t06352H' => 'bol', 'BolC3t12993H' => 'bol', 'BolC4t23525H' => 'bol', 'BolC4t27475H' => 'bol', 'BolC5t29025H' => 'bol', 'BolC5t29026H' => 'bol', 'BolC8t46898H' => 'bol', 'BolC8t46899H' => 'bol', 'BolC8t52630H' => 'bol', 'BolC8t52765H' => 'bol', 'BolC9t53824H' => 'bol', 'BraA03t09760Z' => 'bra', 'BraA03t10990Z' => 'bra', 'BraA05t20413Z' => 'bra', 'BraA08t35602Z' => 'bra', 'BraA09t36458Z' => 'bra', 'BraA09t42018Z' => 'bra', 'BraA09t42129Z' => 'bra', 'BraA10t42536Z' => 'bra', 'BraA10t42537Z' => 'bra', 'C01p10690' => 'bna', 'C02p03890' => 'bna', 'C02p03900' => 'bna', 'C03p04620' => 'bna', 'C04p19870' => 'bna', 'C04p59670' => 'bna', 'C05p02460' => 'bna', 'C05p02470' => 'bna', 'C08p00980' => 'bna', 'C08p00990' => 'bna', 'C08p51030' => 'bna', 'C08p52360' => 'bna', 'C09p09120' => 'bna', 'CAN.G19.15' => 'can', 'CAN.G251.10' => 'can', 'CAN.G251.9' => 'can', 'CAN.G398.24' => 'can', 'CAN.G410.32' => 'can', 'CAN.G881.2' => 'can', 'CANSAT01G3025' => 'cansat', 'CANSAT78G1211' => 'cansat', 'CANSAT78G1218' => 'cansat', 'CANSAT78G1521' => 'cansat', 'CANSAT78G1670' => 'cansat', 'CARHR003600' => 'chi', 'CARHR003610' => 'chi', 'CARHR006290' => 'chi', 'CARHR006430' => 'chi', 'CARHR124110' => 'chi', 'CARHR203870' => 'chi', 'CARHR203880' => 'chi', 'CARHR203890' => 'chi', 'CARHR276880' => 'chi', 'Carub.0001s0346' => 'cru', 'Carub.0001s0347' => 'cru', 'Carub.0001s0607' => 'cru', 'Carub.0003s2768' => 'cru', 'Carub.0003s2769' => 'cru', 'Carub.0004s1178' => 'cru', 'Carub.0006s0806' => 'cru', 'Carub.0006s0807' => 'cru', 'Carub.0006s0808' => 'cru', 'Carub.0008s0501' => 'cru', 'Carub.0008s2379' => 'cru', 'Ca_08655_v3' => 'car', 'Ca_08922_v3' => 'car', 'Ca_08923_v3' => 'car', 'Ca_09119_v3' => 'car', 'Ca_09703_v3' => 'car', 'Ca_09705_v3' => 'car', 'Ca_09835_v3' => 'car', 'Ca_26403_v3' => 'car', 'Ca_30719_v3' => 'car', 'CBR_g17958' => 'cbr', 'CBR_g40516' => 'cbr', 'Cc00_g05350' => 'ccan', 'Cc01_g18690' => 'ccan', 'Cc03_g04830' => 'ccan', 'Cc03_g04850' => 'ccan', 'CDE02G4469' => 'cde', 'CDE06G0883' => 'cde', 'CDE06G1295' => 'cde', 'CDE06G1390' => 'cde', 'CDE07G0584' => 'cde', 'CDE07G1084' => 'cde', 'CDE08G1259' => 'cde', 'Cfa002341' => 'cfa', 'Cfa024337' => 'cfa', 'Ciclev10004749m.g' => 'ccl', 'Ciclev10006127m.g' => 'ccl', 'Ciclev10019720m.g' => 'ccl', 'Ciclev10022652m.g' => 'ccl', 'CiPaw.01G190400' => 'cil', 'CiPaw.01G190500' => 'cil', 'CiPaw.02G116400' => 'cil', 'CiPaw.02G116500' => 'cil', 'CiPaw.04G183000' => 'cil', 'CiPaw.04G183300' => 'cil', 'ClCG05G004610' => 'cla', 'ClCG05G004620' => 'cla', 'ClCG06G006730' => 'cla', 'ClCG06G006740' => 'cla', 'ClCG11G003690' => 'cla', 'COL.COLO4_08276' => 'col', 'COL.COLO4_08277' => 'col', 'COL.COLO4_15787' => 'col', 'COL.COLO4_15789' => 'col', 'Cpa.g.c44815' => 'cpa', 'Cpa.g.sc52.144' => 'cpa', 'Cpa.g.sc58.46' => 'cpa', 'Cpa.g.sc58.47' => 'cpa', 'Cre08.g360900' => 'cre', 'CsaV3_2G013030' => 'csa', 'CsaV3_2G013050' => 'csa', 'CsaV3_2G015620' => 'csa', 'CsaV3_3G012590' => 'csa', 'CsaV3_3G012600' => 'csa', 'CSS0001641' => 'camsi', 'CSS0008310' => 'camsi', 'CSS0013011' => 'camsi', 'CSS0017147' => 'camsi', 'CSS0022970' => 'camsi', 'CSS0025655' => 'camsi', 'CSS0028665' => 'camsi', 'CSS0029117' => 'camsi', 'CSS0032024' => 'camsi', 'CSS0039681' => 'camsi', 'CSS0046516' => 'camsi', 'CSS0050307' => 'camsi', 'DCAR_005871' => 'dca', 'DCAR_007342' => 'dca', 'DCAR_024228' => 'dca', 'DCAR_027277' => 'dca', 'DCAR_030718' => 'dca', 'Dinv20287' => 'din', 'Dinv22461' => 'din', 'Dinv22464' => 'din', 'Dinv29912' => 'din', 'Dinv29913' => 'din', 'Dinv34580' => 'din', 'Dinv34582' => 'din', 'Dinv44632' => 'din', 'Duzib052G0266' => 'dzi', 'Duzib133G0907' => 'dzi', 'Duzib133G1034' => 'dzi', 'Duzib138G0207' => 'dzi', 'Duzib138G0491' => 'dzi', 'Duzib151G0812' => 'dzi', 'Duzib151G1166' => 'dzi', 'Duzib168G0192' => 'dzi', 'Duzib211G0077' => 'dzi', 'Duzib212G0429' => 'dzi', 'Duzib212G0472' => 'dzi', 'ECA233G2617' => 'eca', 'ECA236G4188' => 'eca', 'ECA240G0936' => 'eca', 'ECA240G1129' => 'eca', 'ECA247G0623' => 'eca', 'EL10Ac5g10451' => 'bvu', 'EL10Ac5g10453' => 'bvu', 'EL10Ac5g10894' => 'bvu', 'Eucgr.H00192' => 'egr', 'Eucgr.H00193' => 'egr', 'Eucgr.H00194' => 'egr', 'Eucgr.J01562' => 'egr', 'Eucgr.K03301' => 'egr', 'FAN02G0632' => 'fan', 'FAN05G5378' => 'fan', 'FAN09G3247' => 'fan', 'FAN12G0435' => 'fan', 'FAN12G2426' => 'fan', 'FAN14G1707' => 'fan', 'FAN14G4725' => 'fan', 'FAN15G2071' => 'fan', 'FAN17G3065' => 'fan', 'FAN19G1376' => 'fan', 'FAN20G0354' => 'fan', 'FAN20G2429' => 'fan', 'FAN20G2658' => 'fan', 'FAN24G2343' => 'fan', 'FAN27G2362' => 'fan', 'FAN28G1765' => 'fan', 'FvH4_1g16020' => 'fve', 'FvH4_2g04890' => 'fve', 'FvH4_2g22270' => 'fve', 'FvH4_4g02630' => 'fve', 'FvH4_4g02640' => 'fve', 'FvH4_6g02650' => 'fve', 'Glyma.02G140600' => 'gma', 'Glyma.03G159900' => 'gma', 'Glyma.05G234800' => 'gma', 'Glyma.07G269600' => 'gma', 'Glyma.08G042300' => 'gma', 'Glyma.10G033500' => 'gma', 'Glyma.10G185200' => 'gma', 'Glyma.17G004300' => 'gma', 'Glyma.19G161900' => 'gma', 'Glyma.20G205100' => 'gma', 'Glyma.20G205200' => 'gma', 'Gohir.A01G139101' => 'ghi', 'Gohir.A02G035600' => 'ghi', 'Gohir.A02G117901' => 'ghi', 'Gohir.A07G210100' => 'ghi', 'Gohir.A07G210200' => 'ghi', 'Gohir.A08G061100' => 'ghi', 'Gohir.A09G223000' => 'ghi', 'Gohir.A09G223100' => 'ghi', 'Gohir.A10G113900' => 'ghi', 'Gohir.A10G114000' => 'ghi', 'Gohir.D02G042300' => 'ghi', 'Gohir.D07G216100' => 'ghi', 'Gohir.D07G216200' => 'ghi', 'Gohir.D08G070400' => 'ghi', 'Gohir.D09G225000' => 'ghi', 'Gohir.D09G225100' => 'ghi', 'Gohir.D10G152300' => 'ghi', 'Gohir.D10G153200' => 'ghi', 'Gohir.D11G133701' => 'ghi', 'Gorai.004G074100' => 'gra', 'Gorai.005G046800' => 'gra', 'Gorai.006G246500' => 'gra', 'Gorai.006G246600' => 'gra', 'Gorai.007G142900' => 'gra', 'Gorai.011G171000' => 'gra', 'Gorai.011G171100' => 'gra', 'Gorai.013G104300' => 'gra', 'Gorai.013G104400' => 'gra', 'GSVIVG01000754001' => 'vvi', 'GSVIVG01000756001' => 'vvi', 'GSVIVG01010903001' => 'vvi', 'GSVIVG01017623001' => 'vvi', 'GSVIVG01018113001' => 'vvi', 'GSVIVG01018116001' => 'vvi', 'GSVIVG01018118001' => 'vvi', 'HanXRQChr03g0076211' => 'han', 'HanXRQChr03g0092431' => 'han', 'HanXRQChr03g0092441' => 'han', 'HanXRQChr03g0092591' => 'han', 'HanXRQChr03g0092671' => 'han', 'HanXRQChr03g0092681' => 'han', 'HanXRQChr03g0092691' => 'han', 'HanXRQChr03g0092701' => 'han', 'HanXRQChr03g0092721' => 'han', 'HanXRQChr03g0092731' => 'han', 'HanXRQChr04g0113681' => 'han', 'HanXRQChr10g0281371' => 'han', 'HanXRQChr11g0337141' => 'han', 'HanXRQChr13g0424521' => 'han', 'HanXRQChr13g0424531' => 'han', 'HanXRQChr13g0424541' => 'han', 'HanXRQChr16g0498221' => 'han', 'Haze_04377' => 'cav', 'Haze_11298' => 'cav', 'Haze_24547' => 'cav', 'Haze_24550' => 'cav', 'Haze_26587' => 'cav', 'Hma1.2p1_0650F.1_g195410' => 'hma', 'Hma1.2p1_0893F.1_g233470' => 'hma', 'HPP92_006508' => 'vpl', 'HPP92_024780' => 'vpl', 'Hund02688' => 'sun', 'Hund09380' => 'sun', 'Hund09381' => 'sun', 'Hund09832' => 'sun', 'Hund09833' => 'sun', 'Hund11351' => 'sun', 'Hund11513' => 'sun', 'Lalb_Chr06g0162591' => 'lal', 'Lalb_Chr06g0162601' => 'lal', 'Lalb_Chr06g0169321' => 'lal', 'Lalb_Chr09g0330951' => 'lal', 'Lalb_Chr16g0387631' => 'lal', 'Lalb_Chr21g0306241' => 'lal', 'Lalb_Chr25g0290051' => 'lal', 'Lalb_Chr25g0290061' => 'lal', 'Lalb_Chr25g0290071' => 'lal', 'Lj1g0003876' => 'lja', 'Lj1P1207T36' => 'lonja', 'Lj2C1156G12' => 'lonja', 'Lj3A793G39' => 'lonja', 'Lj3C580G2' => 'lonja', 'Lj3C780G2' => 'lonja', 'Lj3C780T4' => 'lonja', 'Lj3C793G9' => 'lonja', 'Lj4g0012960' => 'lja', 'Lj5g0021252' => 'lja', 'Lj5g0021484' => 'lja', 'Lj5g0024528' => 'lja', 'Lj6A399T12' => 'lonja', 'Lj6A656G65' => 'lonja', 'Lsat_1_v5_gn_3_125500' => 'lsa', 'Lsat_1_v5_gn_3_125540' => 'lsa', 'Lsat_1_v5_gn_5_72701' => 'lsa', 'Lsat_1_v5_gn_8_91560' => 'lsa', 'Lsat_1_v5_gn_9_9640' => 'lsa', 'Manes.01G200600' => 'mes', 'Manes.01G200700' => 'mes', 'Manes.03G168900' => 'mes', 'Manes.03G169000' => 'mes', 'Manes.05G085801' => 'mes', 'Manes.05G086200' => 'mes', 'Manes.15G036700' => 'mes', 'Manes.15G036900' => 'mes', 'Mapoly0004s0172' => 'mpo', 'Mapoly0023s0001' => 'mpo', 'Mapoly0142s0012' => 'mpo', 'MBI01_g32854_MAGBIO' => 'mbi', 'MBI11_g24427_MAGBIO' => 'mbi', 'MBI11_g47319_MAGBIO' => 'mbi', 'MCO01G433' => 'mco', 'MD00G1187800' => 'mdo', 'MD04G1226500' => 'mdo', 'MD05G1203900' => 'mdo', 'MD10G1191100' => 'mdo', 'MD12G1243500' => 'mdo', 'MD13G1207000' => 'mdo', 'MD13G1207100' => 'mdo', 'MD16G1208600' => 'mdo', 'Medtr1g050352' => 'mtr', 'Medtr1g070385' => 'mtr', 'Medtr1g070450' => 'mtr', 'Medtr1g075200' => 'mtr', 'Medtr1g075250' => 'mtr', 'Medtr1g075260' => 'mtr', 'Medtr1g475250' => 'mtr', 'Medtr4g075450' => 'mtr', 'Medtr7g096300' => 'mtr', 'Medtr8g105110' => 'mtr', 'MELO3C006470.2' => 'cme', 'MELO3C006471.2' => 'cme', 'MELO3C020772.2' => 'cme', 'MELO3C026780.2' => 'cme', 'MELO3C026781.2' => 'cme', 'Migut.D00390' => 'egut', 'Migut.G00435' => 'egut', 'Migut.G00436' => 'egut', 'Migut.G00718' => 'egut', 'MSTRG.21891' => 'ama', 'MSTRG.26910' => 'ama', 'MSTRG.4099' => 'ama', 'MSTRG.9925' => 'ama', 'Nitab4.5_0000165g0010' => 'nta', 'Nitab4.5_0000209g0180' => 'nta', 'Nitab4.5_0000244g0440' => 'nta', 'Nitab4.5_0000525g0220' => 'nta', 'Nitab4.5_0001597g0020' => 'nta', 'Nitab4.5_0001878g0040' => 'nta', 'Nitab4.5_0001878g0060' => 'nta', 'Nitab4.5_0002838g0100' => 'nta', 'Nitab4.5_0002838g0120' => 'nta', 'Nitab4.5_0004798g0030' => 'nta', 'Nitab4.5_0005420g0010' => 'nta', 'Nitab4.5_0005507g0010' => 'nta', 'Nitab4.5_0005574g0020' => 'nta', 'Nitab4.5_0005838g0010' => 'nta', 'Nitab4.5_0010580g0020' => 'nta', 'Nn1g02599' => 'nnu', 'Nn1g02608' => 'nnu', 'Nn3g17742' => 'nnu', 'Nn3g19534' => 'nnu', 'Nn3g19535' => 'nnu', 'Oeu008790.1' => 'oeu', 'Oeu008792.1' => 'oeu', 'Oeu032590.1' => 'oeu', 'Oeu035349.1' => 'oeu', 'Oeu049791.1' => 'oeu', 'Os01g0774500' => 'osa', 'Os03g0628800' => 'osa', 'Os03g0798600' => 'osa', 'Os05g0508800' => 'osa', 'Peaxi162Scf00036g02018' => 'pax', 'Peaxi162Scf00578g00032' => 'pax', 'Peaxi162Scf00578g00317' => 'pax', 'Peaxi162Scf00785g00114' => 'pax', 'Peaxi162Scf00813g00119' => 'pax', 'Peaxi162Scf00906g00227' => 'pax', 'PGR004G0875' => 'pgr', 'PGR004G2424' => 'pgr', 'PGR031G1239' => 'pgr', 'PGR031G2474' => 'pgr', 'PGR044G0423' => 'pgr', 'PGSC0003DMG400001128' => 'stu', 'PGSC0003DMG400007336' => 'stu', 'PGSC0003DMG400016318' => 'stu', 'PGSC0003DMG400016319' => 'stu', 'PGSC0003DMG400018074' => 'stu', 'Phvul.001G157700' => 'pvu', 'Phvul.002G148550' => 'pvu', 'Phvul.002G320200' => 'pvu', 'Phvul.003G089200' => 'pvu', 'Phvul.007G126000' => 'pvu', 'Phvul.007G126100' => 'pvu', 'Phvul.007G178000' => 'pvu', 'Phvul.007G178200' => 'pvu', 'Potri.002G043000' => 'ptr', 'Potri.002G043200' => 'ptr', 'Potri.003G123750' => 'ptr', 'Potri.005G055401' => 'ptr', 'Potri.005G219700' => 'ptr', 'Potri.005G220000' => 'ptr', 'Potri.008G161901' => 'ptr', 'Potri.008G162000' => 'ptr', 'Potri.008G162400' => 'ptr', 'Potri.010G076900' => 'ptr', 'Pp3c12_9180' => 'ppa', 'Pp3c13_19770' => 'ppa', 'Pp3c14_22950' => 'ppa', 'Pp3c16_12160' => 'ppa', 'Pp3c27_7820' => 'ppa', 'Pp3c2_3490' => 'ppa', 'Pp3c3_23700' => 'ppa', 'Pp3c3_36520' => 'ppa', 'Pp3c4_15250' => 'ppa', 'PRCOL_00007002' => 'pco', 'Prupe.1G030600' => 'ppe', 'Prupe.1G030700' => 'ppe', 'Prupe.6G345200' => 'ppe', 'Prupe.8G230300' => 'ppe', 'Prupe.8G230500' => 'ppe', 'Psat3g059600' => 'psa', 'Psat5g200920' => 'psa', 'Psat6g056440' => 'psa', 'Psat6g057360' => 'psa', 'Psat6g134120' => 'psa', 'Psat6g134160' => 'psa', 'Psat7g008640' => 'psa', 'Psat7g185240' => 'psa', 'PSO017G1330' => 'pso', 'PSO063G6097' => 'pso', 'PSO170G0835' => 'pso', 'PSO170G2499' => 'pso', 'PSO210G5058' => 'pso', 'PSO210G6154' => 'pso', 'PSO585G0031' => 'pso', 'PSO832G0264' => 'pso', 'PSO832G4288' => 'pso', 'QL03p027355' => 'qlo', 'QL03p027430' => 'qlo', 'QL04p081380' => 'qlo', 'QL06p015642' => 'qlo', 'QL06p015650' => 'qlo', 'QL06p015686' => 'qlo', 'QL12p042927' => 'qlo', 'QL93p1863_0035' => 'qlo', 'RcHm_v2.0_Chr3g0450581' => 'rch', 'RcHm_v2.0_Chr4g0390371' => 'rch', 'RcHm_v2.0_Chr4g0390381' => 'rch', 'RcHm_v2.0_Chr4g0390491' => 'rch', 'RcHm_v2.0_Chr4g0390501' => 'rch', 'RcHm_v2.0_Chr6g0289231' => 'rch', 'Rhsim04G0190400' => 'rsi', 'Rhsim04G0190500' => 'rsi', 'Rhsim04G0190600' => 'rsi', 'Rhsim13G0031400' => 'rsi', 'Rhsim13G0165600' => 'rsi', 'RhsimUnG0114600' => 'rsi', 'RhsimUnG0114700' => 'rsi', 'Sabra02G0034800' => 'sbr', 'Sabra02G0035100' => 'sbr', 'Sabra05G0168600' => 'sbr', 'Sabra05G0168800' => 'sbr', 'Sabra08G0123700' => 'sbr', 'Sabra10G0031900' => 'sbr', 'Sabra13G0039000' => 'sbr', 'SalBow2G0782' => 'sbo', 'SalBow2G1403' => 'sbo', 'SalBow4G0074' => 'sbo', 'SalBow4G2635' => 'sbo', 'SalBow5G3010' => 'sbo', 'Sc05g0000870' => 'sci', 'Sc05g0000890' => 'sci', 'Sc13g0005000' => 'sci', 'Sc13g0005030' => 'sci', 'Sc19g0003790' => 'sci', 'Sc19g0003800' => 'sci', 'Sed0003467' => 'sed', 'Sed0009355' => 'sed', 'Sed0009894' => 'sed', 'Sed0011972' => 'sed', 'Sed0021483' => 'sed', 'Sed0021750' => 'sed', 'Sed0026279' => 'sed', 'SEGI_05312' => 'sgi', 'SEGI_10112' => 'sgi', 'SEGI_15835' => 'sgi', 'SEGI_30386' => 'sgi', 'SEGI_34122' => 'sgi', 'SEGI_35063' => 'sgi', 'SGA_v2.0_scaffold101G29794' => 'sas', 'SGA_v2.0_scaffold1G00573' => 'sas', 'SGA_v2.0_scaffold79G25637' => 'sas', 'SGA_v2.0_scaffold88G27283' => 'sas', 'SGA_v2.0_scaffold88G27285' => 'sas', 'SGA_v2.0_scaffold88G27331' => 'sas', 'SHI09937' => 'shi', 'SMO119G0302' => 'smo', 'SMO137G0231' => 'smo', 'SMO367G1151' => 'smo', 'Solyc02g082000.3' => 'sly', 'Solyc06g031670.3' => 'sly', 'Solyc06g053810.3' => 'sly', 'Solyc07g025457.1' => 'sly', 'Solyc08g059740.1' => 'sly', 'Solyc08g059750.3' => 'sly', 'Solyc09g083370.3' => 'sly', 'Solyc12g038950.3' => 'sly', 'Sopen02g026630' => 'spe', 'Sopen06g018930' => 'spe', 'Sopen06g018940' => 'spe', 'Sopen08g009460' => 'spe', 'Sopen09g032290' => 'spe', 'Sp1g03080' => 'spa', 'Sp1g03090' => 'spa', 'Sp1g05480' => 'spa', 'Sp2g07860' => 'spa', 'Sp2g08430' => 'spa', 'Sp2g08440' => 'spa', 'Sp2g26200' => 'spa', 'Sp4g13170' => 'spa', 'Sp6g33840' => 'spa', 'SpUn1204_0010' => 'spa', 'TAR365G0908' => 'tar', 'TAR381G1270' => 'tar', 'TAR381G1651' => 'tar', 'TAR625G1131' => 'tar', 'TAR633G0962' => 'tar', 'TAR633G1729' => 'tar', 'TAR633G1864' => 'tar', 'TAR636G0221' => 'tar', 'TAR636G0314' => 'tar', 'TAR636G3202' => 'tar', 'THA.LOC104800805' => 'tha', 'THA.LOC104801096' => 'tha', 'THA.LOC104801555' => 'tha', 'THA.LOC104808491' => 'tha', 'THA.LOC104808595' => 'tha', 'THA.LOC104815985' => 'tha', 'THA.LOC104822250' => 'tha', 'THA.LOC104826071' => 'tha', 'Thecc.01G265200' => 'tca', 'Thecc.01G265300' => 'tca', 'Thecc.01G265700' => 'tca', 'Thecc.03G109100' => 'tca', 'Thecc.04G245900' => 'tca', 'Thecc.04G246000' => 'tca', 'Thhalv10003334m.g' => 'esa', 'Thhalv10005508m.g' => 'esa', 'Thhalv10005643m.g' => 'esa', 'Thhalv10007316m.g' => 'esa', 'Thhalv10009006m.g' => 'esa', 'Thhalv10009309m.g' => 'esa', 'Thhalv10014917m.g' => 'esa', 'Thhalv10014919m.g' => 'esa', 'Thhalv10015393m.g' => 'esa', 'Thhalv10016515m.g' => 'esa', 'Thhalv10029242m.g' => 'esa', 'TPR.G16654' => 'tpr', 'TPR.G20589' => 'tpr', 'TPR.G23029' => 'tpr', 'TPR.G27731' => 'tpr', 'TPR.G28889' => 'tpr', 'TPR.G28899' => 'tpr', 'TPR.G30846' => 'tpr', 'TPR.G5452' => 'tpr', 'TPR.G5713' => 'tpr', 'TPR.G9046' => 'tpr', 'TPR.G9061' => 'tpr', 'TWI09G1075' => 'twi', 'TWI12G0806' => 'twi', 'TWI18G0108' => 'twi', 'TWI53G1361' => 'twi', 'TWI73G0185' => 'twi', 'TWI73G0427' => 'twi', 'unitig_37.g12001' => 'ugi', 'unitig_747.g21660' => 'ugi', 'unitig_748.g7232' => 'ugi', 'unitig_748.g7315' => 'ugi', 'unitig_85.g27262' => 'ugi', 'unitig_92.g28220' => 'ugi', 'vmacro02632' => 'vma', 'vmacro08410' => 'vma', 'vmacro08411' => 'vma', 'vmacro15407' => 'vma', 'VMungo0251G3619' => 'vmu', 'VMungo0720G1204' => 'vmu', 'VMungo0720G1918' => 'vmu', 'VMungo0720G2387' => 'vmu', 'VMungo0720G2961' => 'vmu', 'VMungo1215G2154' => 'vmu', 'VMungo1383G2411' => 'vmu', 'Zm00001eb051130' => 'zma', 'Zm00001eb116830' => 'zma', 'Zm00001eb116850' => 'zma', 'Zm00001eb151740' => 'zma', 'Zm00001eb292360' => 'zma', 'Zm00001eb301640' => 'zma' ), 'gf_id' => 'HOM05D000856', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000856' ), 'data_identifier' => 'HOM05D000856', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000856', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p00010' => 'bna', 'A03p04160' => 'bna', 'A03p17160' => 'bna', 'A04p23370' => 'bna', 'A05p14860' => 'bna', 'A08p37020' => 'bna', 'A09p08050' => 'bna', 'A09p66800' => 'bna', 'A09p67940' => 'bna', 'A10p02680' => 'bna', 'A10p05320' => 'bna', 'Aa31LG1G20560' => 'aar', 'Aa31LG1G20610' => 'aar', 'Aa31LG1G7810' => 'aar', 'Aa31LG5G3590' => 'aar', 'Aa31LG5G6140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3819' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4683' => 'aag', 'Actinidia04480' => 'ach', 'Actinidia05466' => 'ach', 'Actinidia08445' => 'ach', 'Actinidia21170' => 'ach', 'Actinidia24812' => 'ach', 'Actinidia24951' => 'ach', 'Actinidia40088' => 'ach', 'Ah.02g111660' => 'amhyb', 'Ah.11g048900' => 'amhyb', 'Ah.11g049910' => 'amhyb', 'AL1G13870' => 'aly', 'AL1G13880' => 'aly', 'AL1G16760' => 'aly', 'AL390U10020' => 'aly', 'AL4G25520' => 'aly', 'AL6G19890' => 'aly', 'AL6G19900' => 'aly', 'AL6G19910' => 'aly', 'AL8G40100' => 'aly', 'Aqoxy2G03562' => 'aox', 'Aqoxy5G00316' => 'aox', 'Aqoxy5G00926' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1628KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1H403S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2FU6SJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.882I6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8YRY2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YN1SN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AF70II' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZA8L1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F916KL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHRD8H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KTZ8QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S22EMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8M29T' => 'arhy', 'AT1G04270' => 'ath', 'AT1G04280' => 'ath', 'AT1G06750' => 'ath', 'AT1G33850' => 'ath', 'AT2G30630' => 'ath', 'AT5G09490' => 'ath', 'AT5G09500' => 'ath', 'AT5G09510' => 'ath', 'AT5G43640' => 'ath', 'AT5G63070' => 'ath', 'ATR0605G315' => 'atr', 'Atru.chr11.175' => 'acertr', 'Atru.chr11.653' => 'acertr', 'Atru.chr3.1616' => 'acertr', 'Atru.chr4.2230' => 'acertr', 'Atru.chr4.2232' => 'acertr', 'Atru.chr5.1598' => 'acertr', 'Atru.chr5.1600' => 'acertr', 'Atru.chr5.2188' => 'acertr', 'AUR62008326' => 'cqu', 'AUR62011922' => 'cqu', 'AUR62011924' => 'cqu', 'AUR62021771' => 'cqu', 'AUR62032237' => 'cqu', 'AUR62032240' => 'cqu', 'BcaB01g05572' => 'bca', 'BcaB02g10337' => 'bca', 'BcaB04g19944' => 'bca', 'BcaB05g21548' => 'bca', 'BcaB05g21549' => 'bca', 'BcaB05g23227' => 'bca', 'BcaB06g26256' => 'bca', 'BcaB06g26257' => 'bca', 'BcaB06g28379' => 'bca', 'BcaC02g11159' => 'bca', 'BcaC03g13258' => 'bca', 'BcaC03g13259' => 'bca', 'BcaC05g24456' => 'bca', 'BcaC05g24457' => 'bca', 'BcaC07g36922' => 'bca', 'BcaC07g36923' => 'bca', 'BcaC07g42050' => 'bca', 'BcaC07g42176' => 'bca', 'BcaC07g42195' => 'bca', 'BcaC07g42196' => 'bca', 'BcaNung06674' => 'bca', 'BolC2t06351H' => 'bol', 'BolC2t06352H' => 'bol', 'BolC3t12993H' => 'bol', 'BolC4t23525H' => 'bol', 'BolC4t27475H' => 'bol', 'BolC5t29025H' => 'bol', 'BolC5t29026H' => 'bol', 'BolC8t46898H' => 'bol', 'BolC8t46899H' => 'bol', 'BolC8t52630H' => 'bol', 'BolC8t52765H' => 'bol', 'BolC9t53824H' => 'bol', 'BraA03t09760Z' => 'bra', 'BraA03t10990Z' => 'bra', 'BraA05t20413Z' => 'bra', 'BraA08t35602Z' => 'bra', 'BraA09t36458Z' => 'bra', 'BraA09t42018Z' => 'bra', 'BraA09t42129Z' => 'bra', 'BraA10t42536Z' => 'bra', 'BraA10t42537Z' => 'bra', 'C01p10690' => 'bna', 'C02p03890' => 'bna', 'C02p03900' => 'bna', 'C03p04620' => 'bna', 'C04p19870' => 'bna', 'C04p59670' => 'bna', 'C05p02460' => 'bna', 'C05p02470' => 'bna', 'C08p00980' => 'bna', 'C08p00990' => 'bna', 'C08p51030' => 'bna', 'C08p52360' => 'bna', 'C09p09120' => 'bna', 'CAN.G19.15' => 'can', 'CAN.G251.10' => 'can', 'CAN.G251.9' => 'can', 'CAN.G398.24' => 'can', 'CAN.G410.32' => 'can', 'CAN.G881.2' => 'can', 'CANSAT01G3025' => 'cansat', 'CANSAT78G1211' => 'cansat', 'CANSAT78G1218' => 'cansat', 'CANSAT78G1521' => 'cansat', 'CANSAT78G1670' => 'cansat', 'CARHR003600' => 'chi', 'CARHR003610' => 'chi', 'CARHR006290' => 'chi', 'CARHR006430' => 'chi', 'CARHR124110' => 'chi', 'CARHR203870' => 'chi', 'CARHR203880' => 'chi', 'CARHR203890' => 'chi', 'CARHR276880' => 'chi', 'Carub.0001s0346' => 'cru', 'Carub.0001s0347' => 'cru', 'Carub.0001s0607' => 'cru', 'Carub.0003s2768' => 'cru', 'Carub.0003s2769' => 'cru', 'Carub.0004s1178' => 'cru', 'Carub.0006s0806' => 'cru', 'Carub.0006s0807' => 'cru', 'Carub.0006s0808' => 'cru', 'Carub.0008s0501' => 'cru', 'Carub.0008s2379' => 'cru', 'Ca_08655_v3' => 'car', 'Ca_08922_v3' => 'car', 'Ca_08923_v3' => 'car', 'Ca_09119_v3' => 'car', 'Ca_09703_v3' => 'car', 'Ca_09705_v3' => 'car', 'Ca_09835_v3' => 'car', 'Ca_26403_v3' => 'car', 'Ca_30719_v3' => 'car', 'CBR_g17958' => 'cbr', 'CBR_g40516' => 'cbr', 'Cc00_g05350' => 'ccan', 'Cc01_g18690' => 'ccan', 'Cc03_g04830' => 'ccan', 'Cc03_g04850' => 'ccan', 'CDE02G4469' => 'cde', 'CDE06G0883' => 'cde', 'CDE06G1295' => 'cde', 'CDE06G1390' => 'cde', 'CDE07G0584' => 'cde', 'CDE07G1084' => 'cde', 'CDE08G1259' => 'cde', 'Cfa002341' => 'cfa', 'Cfa024337' => 'cfa', 'Ciclev10004749m.g' => 'ccl', 'Ciclev10006127m.g' => 'ccl', 'Ciclev10019720m.g' => 'ccl', 'Ciclev10022652m.g' => 'ccl', 'CiPaw.01G190400' => 'cil', 'CiPaw.01G190500' => 'cil', 'CiPaw.02G116400' => 'cil', 'CiPaw.02G116500' => 'cil', 'CiPaw.04G183000' => 'cil', 'CiPaw.04G183300' => 'cil', 'ClCG05G004610' => 'cla', 'ClCG05G004620' => 'cla', 'ClCG06G006730' => 'cla', 'ClCG06G006740' => 'cla', 'ClCG11G003690' => 'cla', 'COL.COLO4_08276' => 'col', 'COL.COLO4_08277' => 'col', 'COL.COLO4_15787' => 'col', 'COL.COLO4_15789' => 'col', 'Cpa.g.c44815' => 'cpa', 'Cpa.g.sc52.144' => 'cpa', 'Cpa.g.sc58.46' => 'cpa', 'Cpa.g.sc58.47' => 'cpa', 'Cre08.g360900' => 'cre', 'CsaV3_2G013030' => 'csa', 'CsaV3_2G013050' => 'csa', 'CsaV3_2G015620' => 'csa', 'CsaV3_3G012590' => 'csa', 'CsaV3_3G012600' => 'csa', 'CSS0001641' => 'camsi', 'CSS0008310' => 'camsi', 'CSS0013011' => 'camsi', 'CSS0017147' => 'camsi', 'CSS0022970' => 'camsi', 'CSS0025655' => 'camsi', 'CSS0028665' => 'camsi', 'CSS0029117' => 'camsi', 'CSS0032024' => 'camsi', 'CSS0039681' => 'camsi', 'CSS0046516' => 'camsi', 'CSS0050307' => 'camsi', 'DCAR_005871' => 'dca', 'DCAR_007342' => 'dca', 'DCAR_024228' => 'dca', 'DCAR_027277' => 'dca', 'DCAR_030718' => 'dca', 'Dinv20287' => 'din', 'Dinv22461' => 'din', 'Dinv22464' => 'din', 'Dinv29912' => 'din', 'Dinv29913' => 'din', 'Dinv34580' => 'din', 'Dinv34582' => 'din', 'Dinv44632' => 'din', 'Duzib052G0266' => 'dzi', 'Duzib133G0907' => 'dzi', 'Duzib133G1034' => 'dzi', 'Duzib138G0207' => 'dzi', 'Duzib138G0491' => 'dzi', 'Duzib151G0812' => 'dzi', 'Duzib151G1166' => 'dzi', 'Duzib168G0192' => 'dzi', 'Duzib211G0077' => 'dzi', 'Duzib212G0429' => 'dzi', 'Duzib212G0472' => 'dzi', 'ECA233G2617' => 'eca', 'ECA236G4188' => 'eca', 'ECA240G0936' => 'eca', 'ECA240G1129' => 'eca', 'ECA247G0623' => 'eca', 'EL10Ac5g10451' => 'bvu', 'EL10Ac5g10453' => 'bvu', 'EL10Ac5g10894' => 'bvu', 'Eucgr.H00192' => 'egr', 'Eucgr.H00193' => 'egr', 'Eucgr.H00194' => 'egr', 'Eucgr.J01562' => 'egr', 'Eucgr.K03301' => 'egr', 'FAN02G0632' => 'fan', 'FAN05G5378' => 'fan', 'FAN09G3247' => 'fan', 'FAN12G0435' => 'fan', 'FAN12G2426' => 'fan', 'FAN14G1707' => 'fan', 'FAN14G4725' => 'fan', 'FAN15G2071' => 'fan', 'FAN17G3065' => 'fan', 'FAN19G1376' => 'fan', 'FAN20G0354' => 'fan', 'FAN20G2429' => 'fan', 'FAN20G2658' => 'fan', 'FAN24G2343' => 'fan', 'FAN27G2362' => 'fan', 'FAN28G1765' => 'fan', 'FvH4_1g16020' => 'fve', 'FvH4_2g04890' => 'fve', 'FvH4_2g22270' => 'fve', 'FvH4_4g02630' => 'fve', 'FvH4_4g02640' => 'fve', 'FvH4_6g02650' => 'fve', 'Glyma.02G140600' => 'gma', 'Glyma.03G159900' => 'gma', 'Glyma.05G234800' => 'gma', 'Glyma.07G269600' => 'gma', 'Glyma.08G042300' => 'gma', 'Glyma.10G033500' => 'gma', 'Glyma.10G185200' => 'gma', 'Glyma.17G004300' => 'gma', 'Glyma.19G161900' => 'gma', 'Glyma.20G205100' => 'gma', 'Glyma.20G205200' => 'gma', 'Gohir.A01G139101' => 'ghi', 'Gohir.A02G035600' => 'ghi', 'Gohir.A02G117901' => 'ghi', 'Gohir.A07G210100' => 'ghi', 'Gohir.A07G210200' => 'ghi', 'Gohir.A08G061100' => 'ghi', 'Gohir.A09G223000' => 'ghi', 'Gohir.A09G223100' => 'ghi', 'Gohir.A10G113900' => 'ghi', 'Gohir.A10G114000' => 'ghi', 'Gohir.D02G042300' => 'ghi', 'Gohir.D07G216100' => 'ghi', 'Gohir.D07G216200' => 'ghi', 'Gohir.D08G070400' => 'ghi', 'Gohir.D09G225000' => 'ghi', 'Gohir.D09G225100' => 'ghi', 'Gohir.D10G152300' => 'ghi', 'Gohir.D10G153200' => 'ghi', 'Gohir.D11G133701' => 'ghi', 'Gorai.004G074100' => 'gra', 'Gorai.005G046800' => 'gra', 'Gorai.006G246500' => 'gra', 'Gorai.006G246600' => 'gra', 'Gorai.007G142900' => 'gra', 'Gorai.011G171000' => 'gra', 'Gorai.011G171100' => 'gra', 'Gorai.013G104300' => 'gra', 'Gorai.013G104400' => 'gra', 'GSVIVG01000754001' => 'vvi', 'GSVIVG01000756001' => 'vvi', 'GSVIVG01010903001' => 'vvi', 'GSVIVG01017623001' => 'vvi', 'GSVIVG01018113001' => 'vvi', 'GSVIVG01018116001' => 'vvi', 'GSVIVG01018118001' => 'vvi', 'HanXRQChr03g0076211' => 'han', 'HanXRQChr03g0092431' => 'han', 'HanXRQChr03g0092441' => 'han', 'HanXRQChr03g0092591' => 'han', 'HanXRQChr03g0092671' => 'han', 'HanXRQChr03g0092681' => 'han', 'HanXRQChr03g0092691' => 'han', 'HanXRQChr03g0092701' => 'han', 'HanXRQChr03g0092721' => 'han', 'HanXRQChr03g0092731' => 'han', 'HanXRQChr04g0113681' => 'han', 'HanXRQChr10g0281371' => 'han', 'HanXRQChr11g0337141' => 'han', 'HanXRQChr13g0424521' => 'han', 'HanXRQChr13g0424531' => 'han', 'HanXRQChr13g0424541' => 'han', 'HanXRQChr16g0498221' => 'han', 'Haze_04377' => 'cav', 'Haze_11298' => 'cav', 'Haze_24547' => 'cav', 'Haze_24550' => 'cav', 'Haze_26587' => 'cav', 'Hma1.2p1_0650F.1_g195410' => 'hma', 'Hma1.2p1_0893F.1_g233470' => 'hma', 'HPP92_006508' => 'vpl', 'HPP92_024780' => 'vpl', 'Hund02688' => 'sun', 'Hund09380' => 'sun', 'Hund09381' => 'sun', 'Hund09832' => 'sun', 'Hund09833' => 'sun', 'Hund11351' => 'sun', 'Hund11513' => 'sun', 'Lalb_Chr06g0162591' => 'lal', 'Lalb_Chr06g0162601' => 'lal', 'Lalb_Chr06g0169321' => 'lal', 'Lalb_Chr09g0330951' => 'lal', 'Lalb_Chr16g0387631' => 'lal', 'Lalb_Chr21g0306241' => 'lal', 'Lalb_Chr25g0290051' => 'lal', 'Lalb_Chr25g0290061' => 'lal', 'Lalb_Chr25g0290071' => 'lal', 'Lj1g0003876' => 'lja', 'Lj1P1207T36' => 'lonja', 'Lj2C1156G12' => 'lonja', 'Lj3A793G39' => 'lonja', 'Lj3C580G2' => 'lonja', 'Lj3C780G2' => 'lonja', 'Lj3C780T4' => 'lonja', 'Lj3C793G9' => 'lonja', 'Lj4g0012960' => 'lja', 'Lj5g0021252' => 'lja', 'Lj5g0021484' => 'lja', 'Lj5g0024528' => 'lja', 'Lj6A399T12' => 'lonja', 'Lj6A656G65' => 'lonja', 'Lsat_1_v5_gn_3_125500' => 'lsa', 'Lsat_1_v5_gn_3_125540' => 'lsa', 'Lsat_1_v5_gn_5_72701' => 'lsa', 'Lsat_1_v5_gn_8_91560' => 'lsa', 'Lsat_1_v5_gn_9_9640' => 'lsa', 'Manes.01G200600' => 'mes', 'Manes.01G200700' => 'mes', 'Manes.03G168900' => 'mes', 'Manes.03G169000' => 'mes', 'Manes.05G085801' => 'mes', 'Manes.05G086200' => 'mes', 'Manes.15G036700' => 'mes', 'Manes.15G036900' => 'mes', 'Mapoly0004s0172' => 'mpo', 'Mapoly0023s0001' => 'mpo', 'Mapoly0142s0012' => 'mpo', 'MBI01_g32854_MAGBIO' => 'mbi', 'MBI11_g24427_MAGBIO' => 'mbi', 'MBI11_g47319_MAGBIO' => 'mbi', 'MCO01G433' => 'mco', 'MD00G1187800' => 'mdo', 'MD04G1226500' => 'mdo', 'MD05G1203900' => 'mdo', 'MD10G1191100' => 'mdo', 'MD12G1243500' => 'mdo', 'MD13G1207000' => 'mdo', 'MD13G1207100' => 'mdo', 'MD16G1208600' => 'mdo', 'Medtr1g050352' => 'mtr', 'Medtr1g070385' => 'mtr', 'Medtr1g070450' => 'mtr', 'Medtr1g075200' => 'mtr', 'Medtr1g075250' => 'mtr', 'Medtr1g075260' => 'mtr', 'Medtr1g475250' => 'mtr', 'Medtr4g075450' => 'mtr', 'Medtr7g096300' => 'mtr', 'Medtr8g105110' => 'mtr', 'MELO3C006470.2' => 'cme', 'MELO3C006471.2' => 'cme', 'MELO3C020772.2' => 'cme', 'MELO3C026780.2' => 'cme', 'MELO3C026781.2' => 'cme', 'Migut.D00390' => 'egut', 'Migut.G00435' => 'egut', 'Migut.G00436' => 'egut', 'Migut.G00718' => 'egut', 'MSTRG.21891' => 'ama', 'MSTRG.26910' => 'ama', 'MSTRG.4099' => 'ama', 'MSTRG.9925' => 'ama', 'Nitab4.5_0000165g0010' => 'nta', 'Nitab4.5_0000209g0180' => 'nta', 'Nitab4.5_0000244g0440' => 'nta', 'Nitab4.5_0000525g0220' => 'nta', 'Nitab4.5_0001597g0020' => 'nta', 'Nitab4.5_0001878g0040' => 'nta', 'Nitab4.5_0001878g0060' => 'nta', 'Nitab4.5_0002838g0100' => 'nta', 'Nitab4.5_0002838g0120' => 'nta', 'Nitab4.5_0004798g0030' => 'nta', 'Nitab4.5_0005420g0010' => 'nta', 'Nitab4.5_0005507g0010' => 'nta', 'Nitab4.5_0005574g0020' => 'nta', 'Nitab4.5_0005838g0010' => 'nta', 'Nitab4.5_0010580g0020' => 'nta', 'Nn1g02599' => 'nnu', 'Nn1g02608' => 'nnu', 'Nn3g17742' => 'nnu', 'Nn3g19534' => 'nnu', 'Nn3g19535' => 'nnu', 'Oeu008790.1' => 'oeu', 'Oeu008792.1' => 'oeu', 'Oeu032590.1' => 'oeu', 'Oeu035349.1' => 'oeu', 'Oeu049791.1' => 'oeu', 'Os01g0774500' => 'osa', 'Os03g0628800' => 'osa', 'Os03g0798600' => 'osa', 'Os05g0508800' => 'osa', 'Peaxi162Scf00036g02018' => 'pax', 'Peaxi162Scf00578g00032' => 'pax', 'Peaxi162Scf00578g00317' => 'pax', 'Peaxi162Scf00785g00114' => 'pax', 'Peaxi162Scf00813g00119' => 'pax', 'Peaxi162Scf00906g00227' => 'pax', 'PGR004G0875' => 'pgr', 'PGR004G2424' => 'pgr', 'PGR031G1239' => 'pgr', 'PGR031G2474' => 'pgr', 'PGR044G0423' => 'pgr', 'PGSC0003DMG400001128' => 'stu', 'PGSC0003DMG400007336' => 'stu', 'PGSC0003DMG400016318' => 'stu', 'PGSC0003DMG400016319' => 'stu', 'PGSC0003DMG400018074' => 'stu', 'Phvul.001G157700' => 'pvu', 'Phvul.002G148550' => 'pvu', 'Phvul.002G320200' => 'pvu', 'Phvul.003G089200' => 'pvu', 'Phvul.007G126000' => 'pvu', 'Phvul.007G126100' => 'pvu', 'Phvul.007G178000' => 'pvu', 'Phvul.007G178200' => 'pvu', 'Potri.002G043000' => 'ptr', 'Potri.002G043200' => 'ptr', 'Potri.003G123750' => 'ptr', 'Potri.005G055401' => 'ptr', 'Potri.005G219700' => 'ptr', 'Potri.005G220000' => 'ptr', 'Potri.008G161901' => 'ptr', 'Potri.008G162000' => 'ptr', 'Potri.008G162400' => 'ptr', 'Potri.010G076900' => 'ptr', 'Pp3c12_9180' => 'ppa', 'Pp3c13_19770' => 'ppa', 'Pp3c14_22950' => 'ppa', 'Pp3c16_12160' => 'ppa', 'Pp3c27_7820' => 'ppa', 'Pp3c2_3490' => 'ppa', 'Pp3c3_23700' => 'ppa', 'Pp3c3_36520' => 'ppa', 'Pp3c4_15250' => 'ppa', 'PRCOL_00007002' => 'pco', 'Prupe.1G030600' => 'ppe', 'Prupe.1G030700' => 'ppe', 'Prupe.6G345200' => 'ppe', 'Prupe.8G230300' => 'ppe', 'Prupe.8G230500' => 'ppe', 'Psat3g059600' => 'psa', 'Psat5g200920' => 'psa', 'Psat6g056440' => 'psa', 'Psat6g057360' => 'psa', 'Psat6g134120' => 'psa', 'Psat6g134160' => 'psa', 'Psat7g008640' => 'psa', 'Psat7g185240' => 'psa', 'PSO017G1330' => 'pso', 'PSO063G6097' => 'pso', 'PSO170G0835' => 'pso', 'PSO170G2499' => 'pso', 'PSO210G5058' => 'pso', 'PSO210G6154' => 'pso', 'PSO585G0031' => 'pso', 'PSO832G0264' => 'pso', 'PSO832G4288' => 'pso', 'QL03p027355' => 'qlo', 'QL03p027430' => 'qlo', 'QL04p081380' => 'qlo', 'QL06p015642' => 'qlo', 'QL06p015650' => 'qlo', 'QL06p015686' => 'qlo', 'QL12p042927' => 'qlo', 'QL93p1863_0035' => 'qlo', 'RcHm_v2.0_Chr3g0450581' => 'rch', 'RcHm_v2.0_Chr4g0390371' => 'rch', 'RcHm_v2.0_Chr4g0390381' => 'rch', 'RcHm_v2.0_Chr4g0390491' => 'rch', 'RcHm_v2.0_Chr4g0390501' => 'rch', 'RcHm_v2.0_Chr6g0289231' => 'rch', 'Rhsim04G0190400' => 'rsi', 'Rhsim04G0190500' => 'rsi', 'Rhsim04G0190600' => 'rsi', 'Rhsim13G0031400' => 'rsi', 'Rhsim13G0165600' => 'rsi', 'RhsimUnG0114600' => 'rsi', 'RhsimUnG0114700' => 'rsi', 'Sabra02G0034800' => 'sbr', 'Sabra02G0035100' => 'sbr', 'Sabra05G0168600' => 'sbr', 'Sabra05G0168800' => 'sbr', 'Sabra08G0123700' => 'sbr', 'Sabra10G0031900' => 'sbr', 'Sabra13G0039000' => 'sbr', 'SalBow2G0782' => 'sbo', 'SalBow2G1403' => 'sbo', 'SalBow4G0074' => 'sbo', 'SalBow4G2635' => 'sbo', 'SalBow5G3010' => 'sbo', 'Sc05g0000870' => 'sci', 'Sc05g0000890' => 'sci', 'Sc13g0005000' => 'sci', 'Sc13g0005030' => 'sci', 'Sc19g0003790' => 'sci', 'Sc19g0003800' => 'sci', 'Sed0003467' => 'sed', 'Sed0009355' => 'sed', 'Sed0009894' => 'sed', 'Sed0011972' => 'sed', 'Sed0021483' => 'sed', 'Sed0021750' => 'sed', 'Sed0026279' => 'sed', 'SEGI_05312' => 'sgi', 'SEGI_10112' => 'sgi', 'SEGI_15835' => 'sgi', 'SEGI_30386' => 'sgi', 'SEGI_34122' => 'sgi', 'SEGI_35063' => 'sgi', 'SGA_v2.0_scaffold101G29794' => 'sas', 'SGA_v2.0_scaffold1G00573' => 'sas', 'SGA_v2.0_scaffold79G25637' => 'sas', 'SGA_v2.0_scaffold88G27283' => 'sas', 'SGA_v2.0_scaffold88G27285' => 'sas', 'SGA_v2.0_scaffold88G27331' => 'sas', 'SHI09937' => 'shi', 'SMO119G0302' => 'smo', 'SMO137G0231' => 'smo', 'SMO367G1151' => 'smo', 'Solyc02g082000.3' => 'sly', 'Solyc06g031670.3' => 'sly', 'Solyc06g053810.3' => 'sly', 'Solyc07g025457.1' => 'sly', 'Solyc08g059740.1' => 'sly', 'Solyc08g059750.3' => 'sly', 'Solyc09g083370.3' => 'sly', 'Solyc12g038950.3' => 'sly', 'Sopen02g026630' => 'spe', 'Sopen06g018930' => 'spe', 'Sopen06g018940' => 'spe', 'Sopen08g009460' => 'spe', 'Sopen09g032290' => 'spe', 'Sp1g03080' => 'spa', 'Sp1g03090' => 'spa', 'Sp1g05480' => 'spa', 'Sp2g07860' => 'spa', 'Sp2g08430' => 'spa', 'Sp2g08440' => 'spa', 'Sp2g26200' => 'spa', 'Sp4g13170' => 'spa', 'Sp6g33840' => 'spa', 'SpUn1204_0010' => 'spa', 'TAR365G0908' => 'tar', 'TAR381G1270' => 'tar', 'TAR381G1651' => 'tar', 'TAR625G1131' => 'tar', 'TAR633G0962' => 'tar', 'TAR633G1729' => 'tar', 'TAR633G1864' => 'tar', 'TAR636G0221' => 'tar', 'TAR636G0314' => 'tar', 'TAR636G3202' => 'tar', 'THA.LOC104800805' => 'tha', 'THA.LOC104801096' => 'tha', 'THA.LOC104801555' => 'tha', 'THA.LOC104808491' => 'tha', 'THA.LOC104808595' => 'tha', 'THA.LOC104815985' => 'tha', 'THA.LOC104822250' => 'tha', 'THA.LOC104826071' => 'tha', 'Thecc.01G265200' => 'tca', 'Thecc.01G265300' => 'tca', 'Thecc.01G265700' => 'tca', 'Thecc.03G109100' => 'tca', 'Thecc.04G245900' => 'tca', 'Thecc.04G246000' => 'tca', 'Thhalv10003334m.g' => 'esa', 'Thhalv10005508m.g' => 'esa', 'Thhalv10005643m.g' => 'esa', 'Thhalv10007316m.g' => 'esa', 'Thhalv10009006m.g' => 'esa', 'Thhalv10009309m.g' => 'esa', 'Thhalv10014917m.g' => 'esa', 'Thhalv10014919m.g' => 'esa', 'Thhalv10015393m.g' => 'esa', 'Thhalv10016515m.g' => 'esa', 'Thhalv10029242m.g' => 'esa', 'TPR.G16654' => 'tpr', 'TPR.G20589' => 'tpr', 'TPR.G23029' => 'tpr', 'TPR.G27731' => 'tpr', 'TPR.G28889' => 'tpr', 'TPR.G28899' => 'tpr', 'TPR.G30846' => 'tpr', 'TPR.G5452' => 'tpr', 'TPR.G5713' => 'tpr', 'TPR.G9046' => 'tpr', 'TPR.G9061' => 'tpr', 'TWI09G1075' => 'twi', 'TWI12G0806' => 'twi', 'TWI18G0108' => 'twi', 'TWI53G1361' => 'twi', 'TWI73G0185' => 'twi', 'TWI73G0427' => 'twi', 'unitig_37.g12001' => 'ugi', 'unitig_747.g21660' => 'ugi', 'unitig_748.g7232' => 'ugi', 'unitig_748.g7315' => 'ugi', 'unitig_85.g27262' => 'ugi', 'unitig_92.g28220' => 'ugi', 'vmacro02632' => 'vma', 'vmacro08410' => 'vma', 'vmacro08411' => 'vma', 'vmacro15407' => 'vma', 'VMungo0251G3619' => 'vmu', 'VMungo0720G1204' => 'vmu', 'VMungo0720G1918' => 'vmu', 'VMungo0720G2387' => 'vmu', 'VMungo0720G2961' => 'vmu', 'VMungo1215G2154' => 'vmu', 'VMungo1383G2411' => 'vmu', 'Zm00001eb051130' => 'zma', 'Zm00001eb116830' => 'zma', 'Zm00001eb116850' => 'zma', 'Zm00001eb151740' => 'zma', 'Zm00001eb292360' => 'zma', 'Zm00001eb301640' => 'zma' ) $gf_id = 'HOM05D000856' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000856' ) $data_identifier = 'HOM05D000856' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 13, 'ath' => (int) 10, 'atr' => (int) 1, 'acertr' => (int) 8, 'cqu' => (int) 6, 'bca' => (int) 21, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 11, 'car' => (int) 9, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 8, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 5, 'fan' => (int) 16, 'fve' => (int) 6, 'gma' => (int) 11, 'ghi' => (int) 19, 'gra' => (int) 9, 'vvi' => (int) 7, 'han' => (int) 17, 'cav' => (int) 5, 'hma' => (int) 2, 'vpl' => (int) 2, 'sun' => (int) 7, 'lal' => (int) 9, 'lja' => (int) 5, 'lonja' => (int) 9, 'lsa' => (int) 5, 'mes' => (int) 8, 'mpo' => (int) 3, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 10, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 15, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 9, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 9, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 6, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 5, 'spa' => (int) 10, 'tar' => (int) 10, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 11, 'tpr' => (int) 11, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 4, 'vmu' => (int) 7, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb301640' $species_info = array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ) $local_species = 'cansat' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000856', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p00010' => 'bna', 'A03p04160' => 'bna', 'A03p17160' => 'bna', 'A04p23370' => 'bna', 'A05p14860' => 'bna', 'A08p37020' => 'bna', 'A09p08050' => 'bna', 'A09p66800' => 'bna', 'A09p67940' => 'bna', 'A10p02680' => 'bna', 'A10p05320' => 'bna', 'Aa31LG1G20560' => 'aar', 'Aa31LG1G20610' => 'aar', 'Aa31LG1G7810' => 'aar', 'Aa31LG5G3590' => 'aar', 'Aa31LG5G6140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3819' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4683' => 'aag', 'Actinidia04480' => 'ach', 'Actinidia05466' => 'ach', 'Actinidia08445' => 'ach', 'Actinidia21170' => 'ach', 'Actinidia24812' => 'ach', 'Actinidia24951' => 'ach', 'Actinidia40088' => 'ach', 'Ah.02g111660' => 'amhyb', 'Ah.11g048900' => 'amhyb', 'Ah.11g049910' => 'amhyb', 'AL1G13870' => 'aly', 'AL1G13880' => 'aly', 'AL1G16760' => 'aly', 'AL390U10020' => 'aly', 'AL4G25520' => 'aly', 'AL6G19890' => 'aly', 'AL6G19900' => 'aly', 'AL6G19910' => 'aly', 'AL8G40100' => 'aly', 'Aqoxy2G03562' => 'aox', 'Aqoxy5G00316' => 'aox', 'Aqoxy5G00926' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1628KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1H403S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2FU6SJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.882I6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8YRY2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YN1SN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AF70II' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZA8L1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F916KL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHRD8H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KTZ8QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S22EMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8M29T' => 'arhy', 'AT1G04270' => 'ath', 'AT1G04280' => 'ath', 'AT1G06750' => 'ath', 'AT1G33850' => 'ath', 'AT2G30630' => 'ath', 'AT5G09490' => 'ath', 'AT5G09500' => 'ath', 'AT5G09510' => 'ath', 'AT5G43640' => 'ath', 'AT5G63070' => 'ath', 'ATR0605G315' => 'atr', 'Atru.chr11.175' => 'acertr', 'Atru.chr11.653' => 'acertr', 'Atru.chr3.1616' => 'acertr', 'Atru.chr4.2230' => 'acertr', 'Atru.chr4.2232' => 'acertr', 'Atru.chr5.1598' => 'acertr', 'Atru.chr5.1600' => 'acertr', 'Atru.chr5.2188' => 'acertr', 'AUR62008326' => 'cqu', 'AUR62011922' => 'cqu', 'AUR62011924' => 'cqu', 'AUR62021771' => 'cqu', 'AUR62032237' => 'cqu', 'AUR62032240' => 'cqu', 'BcaB01g05572' => 'bca', 'BcaB02g10337' => 'bca', 'BcaB04g19944' => 'bca', 'BcaB05g21548' => 'bca', 'BcaB05g21549' => 'bca', 'BcaB05g23227' => 'bca', 'BcaB06g26256' => 'bca', 'BcaB06g26257' => 'bca', 'BcaB06g28379' => 'bca', 'BcaC02g11159' => 'bca', 'BcaC03g13258' => 'bca', 'BcaC03g13259' => 'bca', 'BcaC05g24456' => 'bca', 'BcaC05g24457' => 'bca', 'BcaC07g36922' => 'bca', 'BcaC07g36923' => 'bca', 'BcaC07g42050' => 'bca', 'BcaC07g42176' => 'bca', 'BcaC07g42195' => 'bca', 'BcaC07g42196' => 'bca', 'BcaNung06674' => 'bca', 'BolC2t06351H' => 'bol', 'BolC2t06352H' => 'bol', 'BolC3t12993H' => 'bol', 'BolC4t23525H' => 'bol', 'BolC4t27475H' => 'bol', 'BolC5t29025H' => 'bol', 'BolC5t29026H' => 'bol', 'BolC8t46898H' => 'bol', 'BolC8t46899H' => 'bol', 'BolC8t52630H' => 'bol', 'BolC8t52765H' => 'bol', 'BolC9t53824H' => 'bol', 'BraA03t09760Z' => 'bra', 'BraA03t10990Z' => 'bra', 'BraA05t20413Z' => 'bra', 'BraA08t35602Z' => 'bra', 'BraA09t36458Z' => 'bra', 'BraA09t42018Z' => 'bra', 'BraA09t42129Z' => 'bra', 'BraA10t42536Z' => 'bra', 'BraA10t42537Z' => 'bra', 'C01p10690' => 'bna', 'C02p03890' => 'bna', 'C02p03900' => 'bna', 'C03p04620' => 'bna', 'C04p19870' => 'bna', 'C04p59670' => 'bna', 'C05p02460' => 'bna', 'C05p02470' => 'bna', 'C08p00980' => 'bna', 'C08p00990' => 'bna', 'C08p51030' => 'bna', 'C08p52360' => 'bna', 'C09p09120' => 'bna', 'CAN.G19.15' => 'can', 'CAN.G251.10' => 'can', 'CAN.G251.9' => 'can', 'CAN.G398.24' => 'can', 'CAN.G410.32' => 'can', 'CAN.G881.2' => 'can', 'CANSAT01G3025' => 'cansat', 'CANSAT78G1211' => 'cansat', 'CANSAT78G1218' => 'cansat', 'CANSAT78G1521' => 'cansat', 'CANSAT78G1670' => 'cansat', 'CARHR003600' => 'chi', 'CARHR003610' => 'chi', 'CARHR006290' => 'chi', 'CARHR006430' => 'chi', 'CARHR124110' => 'chi', 'CARHR203870' => 'chi', 'CARHR203880' => 'chi', 'CARHR203890' => 'chi', 'CARHR276880' => 'chi', 'Carub.0001s0346' => 'cru', 'Carub.0001s0347' => 'cru', 'Carub.0001s0607' => 'cru', 'Carub.0003s2768' => 'cru', 'Carub.0003s2769' => 'cru', 'Carub.0004s1178' => 'cru', 'Carub.0006s0806' => 'cru', 'Carub.0006s0807' => 'cru', 'Carub.0006s0808' => 'cru', 'Carub.0008s0501' => 'cru', 'Carub.0008s2379' => 'cru', 'Ca_08655_v3' => 'car', 'Ca_08922_v3' => 'car', 'Ca_08923_v3' => 'car', 'Ca_09119_v3' => 'car', 'Ca_09703_v3' => 'car', 'Ca_09705_v3' => 'car', 'Ca_09835_v3' => 'car', 'Ca_26403_v3' => 'car', 'Ca_30719_v3' => 'car', 'CBR_g17958' => 'cbr', 'CBR_g40516' => 'cbr', 'Cc00_g05350' => 'ccan', 'Cc01_g18690' => 'ccan', 'Cc03_g04830' => 'ccan', 'Cc03_g04850' => 'ccan', 'CDE02G4469' => 'cde', 'CDE06G0883' => 'cde', 'CDE06G1295' => 'cde', 'CDE06G1390' => 'cde', 'CDE07G0584' => 'cde', 'CDE07G1084' => 'cde', 'CDE08G1259' => 'cde', 'Cfa002341' => 'cfa', 'Cfa024337' => 'cfa', 'Ciclev10004749m.g' => 'ccl', 'Ciclev10006127m.g' => 'ccl', 'Ciclev10019720m.g' => 'ccl', 'Ciclev10022652m.g' => 'ccl', 'CiPaw.01G190400' => 'cil', 'CiPaw.01G190500' => 'cil', 'CiPaw.02G116400' => 'cil', 'CiPaw.02G116500' => 'cil', 'CiPaw.04G183000' => 'cil', 'CiPaw.04G183300' => 'cil', 'ClCG05G004610' => 'cla', 'ClCG05G004620' => 'cla', 'ClCG06G006730' => 'cla', 'ClCG06G006740' => 'cla', 'ClCG11G003690' => 'cla', 'COL.COLO4_08276' => 'col', 'COL.COLO4_08277' => 'col', 'COL.COLO4_15787' => 'col', 'COL.COLO4_15789' => 'col', 'Cpa.g.c44815' => 'cpa', 'Cpa.g.sc52.144' => 'cpa', 'Cpa.g.sc58.46' => 'cpa', 'Cpa.g.sc58.47' => 'cpa', 'Cre08.g360900' => 'cre', 'CsaV3_2G013030' => 'csa', 'CsaV3_2G013050' => 'csa', 'CsaV3_2G015620' => 'csa', 'CsaV3_3G012590' => 'csa', 'CsaV3_3G012600' => 'csa', 'CSS0001641' => 'camsi', 'CSS0008310' => 'camsi', 'CSS0013011' => 'camsi', 'CSS0017147' => 'camsi', 'CSS0022970' => 'camsi', 'CSS0025655' => 'camsi', 'CSS0028665' => 'camsi', 'CSS0029117' => 'camsi', 'CSS0032024' => 'camsi', 'CSS0039681' => 'camsi', 'CSS0046516' => 'camsi', 'CSS0050307' => 'camsi', 'DCAR_005871' => 'dca', 'DCAR_007342' => 'dca', 'DCAR_024228' => 'dca', 'DCAR_027277' => 'dca', 'DCAR_030718' => 'dca', 'Dinv20287' => 'din', 'Dinv22461' => 'din', 'Dinv22464' => 'din', 'Dinv29912' => 'din', 'Dinv29913' => 'din', 'Dinv34580' => 'din', 'Dinv34582' => 'din', 'Dinv44632' => 'din', 'Duzib052G0266' => 'dzi', 'Duzib133G0907' => 'dzi', 'Duzib133G1034' => 'dzi', 'Duzib138G0207' => 'dzi', 'Duzib138G0491' => 'dzi', 'Duzib151G0812' => 'dzi', 'Duzib151G1166' => 'dzi', 'Duzib168G0192' => 'dzi', 'Duzib211G0077' => 'dzi', 'Duzib212G0429' => 'dzi', 'Duzib212G0472' => 'dzi', 'ECA233G2617' => 'eca', 'ECA236G4188' => 'eca', 'ECA240G0936' => 'eca', 'ECA240G1129' => 'eca', 'ECA247G0623' => 'eca', 'EL10Ac5g10451' => 'bvu', 'EL10Ac5g10453' => 'bvu', 'EL10Ac5g10894' => 'bvu', 'Eucgr.H00192' => 'egr', 'Eucgr.H00193' => 'egr', 'Eucgr.H00194' => 'egr', 'Eucgr.J01562' => 'egr', 'Eucgr.K03301' => 'egr', 'FAN02G0632' => 'fan', 'FAN05G5378' => 'fan', 'FAN09G3247' => 'fan', 'FAN12G0435' => 'fan', 'FAN12G2426' => 'fan', 'FAN14G1707' => 'fan', 'FAN14G4725' => 'fan', 'FAN15G2071' => 'fan', 'FAN17G3065' => 'fan', 'FAN19G1376' => 'fan', 'FAN20G0354' => 'fan', 'FAN20G2429' => 'fan', 'FAN20G2658' => 'fan', 'FAN24G2343' => 'fan', 'FAN27G2362' => 'fan', 'FAN28G1765' => 'fan', 'FvH4_1g16020' => 'fve', 'FvH4_2g04890' => 'fve', 'FvH4_2g22270' => 'fve', 'FvH4_4g02630' => 'fve', 'FvH4_4g02640' => 'fve', 'FvH4_6g02650' => 'fve', 'Glyma.02G140600' => 'gma', 'Glyma.03G159900' => 'gma', 'Glyma.05G234800' => 'gma', 'Glyma.07G269600' => 'gma', 'Glyma.08G042300' => 'gma', 'Glyma.10G033500' => 'gma', 'Glyma.10G185200' => 'gma', 'Glyma.17G004300' => 'gma', 'Glyma.19G161900' => 'gma', 'Glyma.20G205100' => 'gma', 'Glyma.20G205200' => 'gma', 'Gohir.A01G139101' => 'ghi', 'Gohir.A02G035600' => 'ghi', 'Gohir.A02G117901' => 'ghi', 'Gohir.A07G210100' => 'ghi', 'Gohir.A07G210200' => 'ghi', 'Gohir.A08G061100' => 'ghi', 'Gohir.A09G223000' => 'ghi', 'Gohir.A09G223100' => 'ghi', 'Gohir.A10G113900' => 'ghi', 'Gohir.A10G114000' => 'ghi', 'Gohir.D02G042300' => 'ghi', 'Gohir.D07G216100' => 'ghi', 'Gohir.D07G216200' => 'ghi', 'Gohir.D08G070400' => 'ghi', 'Gohir.D09G225000' => 'ghi', 'Gohir.D09G225100' => 'ghi', 'Gohir.D10G152300' => 'ghi', 'Gohir.D10G153200' => 'ghi', 'Gohir.D11G133701' => 'ghi', 'Gorai.004G074100' => 'gra', 'Gorai.005G046800' => 'gra', 'Gorai.006G246500' => 'gra', 'Gorai.006G246600' => 'gra', 'Gorai.007G142900' => 'gra', 'Gorai.011G171000' => 'gra', 'Gorai.011G171100' => 'gra', 'Gorai.013G104300' => 'gra', 'Gorai.013G104400' => 'gra', 'GSVIVG01000754001' => 'vvi', 'GSVIVG01000756001' => 'vvi', 'GSVIVG01010903001' => 'vvi', 'GSVIVG01017623001' => 'vvi', 'GSVIVG01018113001' => 'vvi', 'GSVIVG01018116001' => 'vvi', 'GSVIVG01018118001' => 'vvi', 'HanXRQChr03g0076211' => 'han', 'HanXRQChr03g0092431' => 'han', 'HanXRQChr03g0092441' => 'han', 'HanXRQChr03g0092591' => 'han', 'HanXRQChr03g0092671' => 'han', 'HanXRQChr03g0092681' => 'han', 'HanXRQChr03g0092691' => 'han', 'HanXRQChr03g0092701' => 'han', 'HanXRQChr03g0092721' => 'han', 'HanXRQChr03g0092731' => 'han', 'HanXRQChr04g0113681' => 'han', 'HanXRQChr10g0281371' => 'han', 'HanXRQChr11g0337141' => 'han', 'HanXRQChr13g0424521' => 'han', 'HanXRQChr13g0424531' => 'han', 'HanXRQChr13g0424541' => 'han', 'HanXRQChr16g0498221' => 'han', 'Haze_04377' => 'cav', 'Haze_11298' => 'cav', 'Haze_24547' => 'cav', 'Haze_24550' => 'cav', 'Haze_26587' => 'cav', 'Hma1.2p1_0650F.1_g195410' => 'hma', 'Hma1.2p1_0893F.1_g233470' => 'hma', 'HPP92_006508' => 'vpl', 'HPP92_024780' => 'vpl', 'Hund02688' => 'sun', 'Hund09380' => 'sun', 'Hund09381' => 'sun', 'Hund09832' => 'sun', 'Hund09833' => 'sun', 'Hund11351' => 'sun', 'Hund11513' => 'sun', 'Lalb_Chr06g0162591' => 'lal', 'Lalb_Chr06g0162601' => 'lal', 'Lalb_Chr06g0169321' => 'lal', 'Lalb_Chr09g0330951' => 'lal', 'Lalb_Chr16g0387631' => 'lal', 'Lalb_Chr21g0306241' => 'lal', 'Lalb_Chr25g0290051' => 'lal', 'Lalb_Chr25g0290061' => 'lal', 'Lalb_Chr25g0290071' => 'lal', 'Lj1g0003876' => 'lja', 'Lj1P1207T36' => 'lonja', 'Lj2C1156G12' => 'lonja', 'Lj3A793G39' => 'lonja', 'Lj3C580G2' => 'lonja', 'Lj3C780G2' => 'lonja', 'Lj3C780T4' => 'lonja', 'Lj3C793G9' => 'lonja', 'Lj4g0012960' => 'lja', 'Lj5g0021252' => 'lja', 'Lj5g0021484' => 'lja', 'Lj5g0024528' => 'lja', 'Lj6A399T12' => 'lonja', 'Lj6A656G65' => 'lonja', 'Lsat_1_v5_gn_3_125500' => 'lsa', 'Lsat_1_v5_gn_3_125540' => 'lsa', 'Lsat_1_v5_gn_5_72701' => 'lsa', 'Lsat_1_v5_gn_8_91560' => 'lsa', 'Lsat_1_v5_gn_9_9640' => 'lsa', 'Manes.01G200600' => 'mes', 'Manes.01G200700' => 'mes', 'Manes.03G168900' => 'mes', 'Manes.03G169000' => 'mes', 'Manes.05G085801' => 'mes', 'Manes.05G086200' => 'mes', 'Manes.15G036700' => 'mes', 'Manes.15G036900' => 'mes', 'Mapoly0004s0172' => 'mpo', 'Mapoly0023s0001' => 'mpo', 'Mapoly0142s0012' => 'mpo', 'MBI01_g32854_MAGBIO' => 'mbi', 'MBI11_g24427_MAGBIO' => 'mbi', 'MBI11_g47319_MAGBIO' => 'mbi', 'MCO01G433' => 'mco', 'MD00G1187800' => 'mdo', 'MD04G1226500' => 'mdo', 'MD05G1203900' => 'mdo', 'MD10G1191100' => 'mdo', 'MD12G1243500' => 'mdo', 'MD13G1207000' => 'mdo', 'MD13G1207100' => 'mdo', 'MD16G1208600' => 'mdo', 'Medtr1g050352' => 'mtr', 'Medtr1g070385' => 'mtr', 'Medtr1g070450' => 'mtr', 'Medtr1g075200' => 'mtr', 'Medtr1g075250' => 'mtr', 'Medtr1g075260' => 'mtr', 'Medtr1g475250' => 'mtr', 'Medtr4g075450' => 'mtr', 'Medtr7g096300' => 'mtr', 'Medtr8g105110' => 'mtr', 'MELO3C006470.2' => 'cme', 'MELO3C006471.2' => 'cme', 'MELO3C020772.2' => 'cme', 'MELO3C026780.2' => 'cme', 'MELO3C026781.2' => 'cme', 'Migut.D00390' => 'egut', 'Migut.G00435' => 'egut', 'Migut.G00436' => 'egut', 'Migut.G00718' => 'egut', 'MSTRG.21891' => 'ama', 'MSTRG.26910' => 'ama', 'MSTRG.4099' => 'ama', 'MSTRG.9925' => 'ama', 'Nitab4.5_0000165g0010' => 'nta', 'Nitab4.5_0000209g0180' => 'nta', 'Nitab4.5_0000244g0440' => 'nta', 'Nitab4.5_0000525g0220' => 'nta', 'Nitab4.5_0001597g0020' => 'nta', 'Nitab4.5_0001878g0040' => 'nta', 'Nitab4.5_0001878g0060' => 'nta', 'Nitab4.5_0002838g0100' => 'nta', 'Nitab4.5_0002838g0120' => 'nta', 'Nitab4.5_0004798g0030' => 'nta', 'Nitab4.5_0005420g0010' => 'nta', 'Nitab4.5_0005507g0010' => 'nta', 'Nitab4.5_0005574g0020' => 'nta', 'Nitab4.5_0005838g0010' => 'nta', 'Nitab4.5_0010580g0020' => 'nta', 'Nn1g02599' => 'nnu', 'Nn1g02608' => 'nnu', 'Nn3g17742' => 'nnu', 'Nn3g19534' => 'nnu', 'Nn3g19535' => 'nnu', 'Oeu008790.1' => 'oeu', 'Oeu008792.1' => 'oeu', 'Oeu032590.1' => 'oeu', 'Oeu035349.1' => 'oeu', 'Oeu049791.1' => 'oeu', 'Os01g0774500' => 'osa', 'Os03g0628800' => 'osa', 'Os03g0798600' => 'osa', 'Os05g0508800' => 'osa', 'Peaxi162Scf00036g02018' => 'pax', 'Peaxi162Scf00578g00032' => 'pax', 'Peaxi162Scf00578g00317' => 'pax', 'Peaxi162Scf00785g00114' => 'pax', 'Peaxi162Scf00813g00119' => 'pax', 'Peaxi162Scf00906g00227' => 'pax', 'PGR004G0875' => 'pgr', 'PGR004G2424' => 'pgr', 'PGR031G1239' => 'pgr', 'PGR031G2474' => 'pgr', 'PGR044G0423' => 'pgr', 'PGSC0003DMG400001128' => 'stu', 'PGSC0003DMG400007336' => 'stu', 'PGSC0003DMG400016318' => 'stu', 'PGSC0003DMG400016319' => 'stu', 'PGSC0003DMG400018074' => 'stu', 'Phvul.001G157700' => 'pvu', 'Phvul.002G148550' => 'pvu', 'Phvul.002G320200' => 'pvu', 'Phvul.003G089200' => 'pvu', 'Phvul.007G126000' => 'pvu', 'Phvul.007G126100' => 'pvu', 'Phvul.007G178000' => 'pvu', 'Phvul.007G178200' => 'pvu', 'Potri.002G043000' => 'ptr', 'Potri.002G043200' => 'ptr', 'Potri.003G123750' => 'ptr', 'Potri.005G055401' => 'ptr', 'Potri.005G219700' => 'ptr', 'Potri.005G220000' => 'ptr', 'Potri.008G161901' => 'ptr', 'Potri.008G162000' => 'ptr', 'Potri.008G162400' => 'ptr', 'Potri.010G076900' => 'ptr', 'Pp3c12_9180' => 'ppa', 'Pp3c13_19770' => 'ppa', 'Pp3c14_22950' => 'ppa', 'Pp3c16_12160' => 'ppa', 'Pp3c27_7820' => 'ppa', 'Pp3c2_3490' => 'ppa', 'Pp3c3_23700' => 'ppa', 'Pp3c3_36520' => 'ppa', 'Pp3c4_15250' => 'ppa', 'PRCOL_00007002' => 'pco', 'Prupe.1G030600' => 'ppe', 'Prupe.1G030700' => 'ppe', 'Prupe.6G345200' => 'ppe', 'Prupe.8G230300' => 'ppe', 'Prupe.8G230500' => 'ppe', 'Psat3g059600' => 'psa', 'Psat5g200920' => 'psa', 'Psat6g056440' => 'psa', 'Psat6g057360' => 'psa', 'Psat6g134120' => 'psa', 'Psat6g134160' => 'psa', 'Psat7g008640' => 'psa', 'Psat7g185240' => 'psa', 'PSO017G1330' => 'pso', 'PSO063G6097' => 'pso', 'PSO170G0835' => 'pso', 'PSO170G2499' => 'pso', 'PSO210G5058' => 'pso', 'PSO210G6154' => 'pso', 'PSO585G0031' => 'pso', 'PSO832G0264' => 'pso', 'PSO832G4288' => 'pso', 'QL03p027355' => 'qlo', 'QL03p027430' => 'qlo', 'QL04p081380' => 'qlo', 'QL06p015642' => 'qlo', 'QL06p015650' => 'qlo', 'QL06p015686' => 'qlo', 'QL12p042927' => 'qlo', 'QL93p1863_0035' => 'qlo', 'RcHm_v2.0_Chr3g0450581' => 'rch', 'RcHm_v2.0_Chr4g0390371' => 'rch', 'RcHm_v2.0_Chr4g0390381' => 'rch', 'RcHm_v2.0_Chr4g0390491' => 'rch', 'RcHm_v2.0_Chr4g0390501' => 'rch', 'RcHm_v2.0_Chr6g0289231' => 'rch', 'Rhsim04G0190400' => 'rsi', 'Rhsim04G0190500' => 'rsi', 'Rhsim04G0190600' => 'rsi', 'Rhsim13G0031400' => 'rsi', 'Rhsim13G0165600' => 'rsi', 'RhsimUnG0114600' => 'rsi', 'RhsimUnG0114700' => 'rsi', 'Sabra02G0034800' => 'sbr', 'Sabra02G0035100' => 'sbr', 'Sabra05G0168600' => 'sbr', 'Sabra05G0168800' => 'sbr', 'Sabra08G0123700' => 'sbr', 'Sabra10G0031900' => 'sbr', 'Sabra13G0039000' => 'sbr', 'SalBow2G0782' => 'sbo', 'SalBow2G1403' => 'sbo', 'SalBow4G0074' => 'sbo', 'SalBow4G2635' => 'sbo', 'SalBow5G3010' => 'sbo', 'Sc05g0000870' => 'sci', 'Sc05g0000890' => 'sci', 'Sc13g0005000' => 'sci', 'Sc13g0005030' => 'sci', 'Sc19g0003790' => 'sci', 'Sc19g0003800' => 'sci', 'Sed0003467' => 'sed', 'Sed0009355' => 'sed', 'Sed0009894' => 'sed', 'Sed0011972' => 'sed', 'Sed0021483' => 'sed', 'Sed0021750' => 'sed', 'Sed0026279' => 'sed', 'SEGI_05312' => 'sgi', 'SEGI_10112' => 'sgi', 'SEGI_15835' => 'sgi', 'SEGI_30386' => 'sgi', 'SEGI_34122' => 'sgi', 'SEGI_35063' => 'sgi', 'SGA_v2.0_scaffold101G29794' => 'sas', 'SGA_v2.0_scaffold1G00573' => 'sas', 'SGA_v2.0_scaffold79G25637' => 'sas', 'SGA_v2.0_scaffold88G27283' => 'sas', 'SGA_v2.0_scaffold88G27285' => 'sas', 'SGA_v2.0_scaffold88G27331' => 'sas', 'SHI09937' => 'shi', 'SMO119G0302' => 'smo', 'SMO137G0231' => 'smo', 'SMO367G1151' => 'smo', 'Solyc02g082000.3' => 'sly', 'Solyc06g031670.3' => 'sly', 'Solyc06g053810.3' => 'sly', 'Solyc07g025457.1' => 'sly', 'Solyc08g059740.1' => 'sly', 'Solyc08g059750.3' => 'sly', 'Solyc09g083370.3' => 'sly', 'Solyc12g038950.3' => 'sly', 'Sopen02g026630' => 'spe', 'Sopen06g018930' => 'spe', 'Sopen06g018940' => 'spe', 'Sopen08g009460' => 'spe', 'Sopen09g032290' => 'spe', 'Sp1g03080' => 'spa', 'Sp1g03090' => 'spa', 'Sp1g05480' => 'spa', 'Sp2g07860' => 'spa', 'Sp2g08430' => 'spa', 'Sp2g08440' => 'spa', 'Sp2g26200' => 'spa', 'Sp4g13170' => 'spa', 'Sp6g33840' => 'spa', 'SpUn1204_0010' => 'spa', 'TAR365G0908' => 'tar', 'TAR381G1270' => 'tar', 'TAR381G1651' => 'tar', 'TAR625G1131' => 'tar', 'TAR633G0962' => 'tar', 'TAR633G1729' => 'tar', 'TAR633G1864' => 'tar', 'TAR636G0221' => 'tar', 'TAR636G0314' => 'tar', 'TAR636G3202' => 'tar', 'THA.LOC104800805' => 'tha', 'THA.LOC104801096' => 'tha', 'THA.LOC104801555' => 'tha', 'THA.LOC104808491' => 'tha', 'THA.LOC104808595' => 'tha', 'THA.LOC104815985' => 'tha', 'THA.LOC104822250' => 'tha', 'THA.LOC104826071' => 'tha', 'Thecc.01G265200' => 'tca', 'Thecc.01G265300' => 'tca', 'Thecc.01G265700' => 'tca', 'Thecc.03G109100' => 'tca', 'Thecc.04G245900' => 'tca', 'Thecc.04G246000' => 'tca', 'Thhalv10003334m.g' => 'esa', 'Thhalv10005508m.g' => 'esa', 'Thhalv10005643m.g' => 'esa', 'Thhalv10007316m.g' => 'esa', 'Thhalv10009006m.g' => 'esa', 'Thhalv10009309m.g' => 'esa', 'Thhalv10014917m.g' => 'esa', 'Thhalv10014919m.g' => 'esa', 'Thhalv10015393m.g' => 'esa', 'Thhalv10016515m.g' => 'esa', 'Thhalv10029242m.g' => 'esa', 'TPR.G16654' => 'tpr', 'TPR.G20589' => 'tpr', 'TPR.G23029' => 'tpr', 'TPR.G27731' => 'tpr', 'TPR.G28889' => 'tpr', 'TPR.G28899' => 'tpr', 'TPR.G30846' => 'tpr', 'TPR.G5452' => 'tpr', 'TPR.G5713' => 'tpr', 'TPR.G9046' => 'tpr', 'TPR.G9061' => 'tpr', 'TWI09G1075' => 'twi', 'TWI12G0806' => 'twi', 'TWI18G0108' => 'twi', 'TWI53G1361' => 'twi', 'TWI73G0185' => 'twi', 'TWI73G0427' => 'twi', 'unitig_37.g12001' => 'ugi', 'unitig_747.g21660' => 'ugi', 'unitig_748.g7232' => 'ugi', 'unitig_748.g7315' => 'ugi', 'unitig_85.g27262' => 'ugi', 'unitig_92.g28220' => 'ugi', 'vmacro02632' => 'vma', 'vmacro08410' => 'vma', 'vmacro08411' => 'vma', 'vmacro15407' => 'vma', 'VMungo0251G3619' => 'vmu', 'VMungo0720G1204' => 'vmu', 'VMungo0720G1918' => 'vmu', 'VMungo0720G2387' => 'vmu', 'VMungo0720G2961' => 'vmu', 'VMungo1215G2154' => 'vmu', 'VMungo1383G2411' => 'vmu', 'Zm00001eb051130' => 'zma', 'Zm00001eb116830' => 'zma', 'Zm00001eb116850' => 'zma', 'Zm00001eb151740' => 'zma', 'Zm00001eb292360' => 'zma', 'Zm00001eb301640' => 'zma' ), 'gf_id' => 'HOM05D000856', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000856' ), 'data_identifier' => 'HOM05D000856', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000856', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p00010' => 'bna', 'A03p04160' => 'bna', 'A03p17160' => 'bna', 'A04p23370' => 'bna', 'A05p14860' => 'bna', 'A08p37020' => 'bna', 'A09p08050' => 'bna', 'A09p66800' => 'bna', 'A09p67940' => 'bna', 'A10p02680' => 'bna', 'A10p05320' => 'bna', 'Aa31LG1G20560' => 'aar', 'Aa31LG1G20610' => 'aar', 'Aa31LG1G7810' => 'aar', 'Aa31LG5G3590' => 'aar', 'Aa31LG5G6140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3819' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4683' => 'aag', 'Actinidia04480' => 'ach', 'Actinidia05466' => 'ach', 'Actinidia08445' => 'ach', 'Actinidia21170' => 'ach', 'Actinidia24812' => 'ach', 'Actinidia24951' => 'ach', 'Actinidia40088' => 'ach', 'Ah.02g111660' => 'amhyb', 'Ah.11g048900' => 'amhyb', 'Ah.11g049910' => 'amhyb', 'AL1G13870' => 'aly', 'AL1G13880' => 'aly', 'AL1G16760' => 'aly', 'AL390U10020' => 'aly', 'AL4G25520' => 'aly', 'AL6G19890' => 'aly', 'AL6G19900' => 'aly', 'AL6G19910' => 'aly', 'AL8G40100' => 'aly', 'Aqoxy2G03562' => 'aox', 'Aqoxy5G00316' => 'aox', 'Aqoxy5G00926' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1628KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1H403S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2FU6SJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.882I6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8YRY2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YN1SN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AF70II' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZA8L1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F916KL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHRD8H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KTZ8QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S22EMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8M29T' => 'arhy', 'AT1G04270' => 'ath', 'AT1G04280' => 'ath', 'AT1G06750' => 'ath', 'AT1G33850' => 'ath', 'AT2G30630' => 'ath', 'AT5G09490' => 'ath', 'AT5G09500' => 'ath', 'AT5G09510' => 'ath', 'AT5G43640' => 'ath', 'AT5G63070' => 'ath', 'ATR0605G315' => 'atr', 'Atru.chr11.175' => 'acertr', 'Atru.chr11.653' => 'acertr', 'Atru.chr3.1616' => 'acertr', 'Atru.chr4.2230' => 'acertr', 'Atru.chr4.2232' => 'acertr', 'Atru.chr5.1598' => 'acertr', 'Atru.chr5.1600' => 'acertr', 'Atru.chr5.2188' => 'acertr', 'AUR62008326' => 'cqu', 'AUR62011922' => 'cqu', 'AUR62011924' => 'cqu', 'AUR62021771' => 'cqu', 'AUR62032237' => 'cqu', 'AUR62032240' => 'cqu', 'BcaB01g05572' => 'bca', 'BcaB02g10337' => 'bca', 'BcaB04g19944' => 'bca', 'BcaB05g21548' => 'bca', 'BcaB05g21549' => 'bca', 'BcaB05g23227' => 'bca', 'BcaB06g26256' => 'bca', 'BcaB06g26257' => 'bca', 'BcaB06g28379' => 'bca', 'BcaC02g11159' => 'bca', 'BcaC03g13258' => 'bca', 'BcaC03g13259' => 'bca', 'BcaC05g24456' => 'bca', 'BcaC05g24457' => 'bca', 'BcaC07g36922' => 'bca', 'BcaC07g36923' => 'bca', 'BcaC07g42050' => 'bca', 'BcaC07g42176' => 'bca', 'BcaC07g42195' => 'bca', 'BcaC07g42196' => 'bca', 'BcaNung06674' => 'bca', 'BolC2t06351H' => 'bol', 'BolC2t06352H' => 'bol', 'BolC3t12993H' => 'bol', 'BolC4t23525H' => 'bol', 'BolC4t27475H' => 'bol', 'BolC5t29025H' => 'bol', 'BolC5t29026H' => 'bol', 'BolC8t46898H' => 'bol', 'BolC8t46899H' => 'bol', 'BolC8t52630H' => 'bol', 'BolC8t52765H' => 'bol', 'BolC9t53824H' => 'bol', 'BraA03t09760Z' => 'bra', 'BraA03t10990Z' => 'bra', 'BraA05t20413Z' => 'bra', 'BraA08t35602Z' => 'bra', 'BraA09t36458Z' => 'bra', 'BraA09t42018Z' => 'bra', 'BraA09t42129Z' => 'bra', 'BraA10t42536Z' => 'bra', 'BraA10t42537Z' => 'bra', 'C01p10690' => 'bna', 'C02p03890' => 'bna', 'C02p03900' => 'bna', 'C03p04620' => 'bna', 'C04p19870' => 'bna', 'C04p59670' => 'bna', 'C05p02460' => 'bna', 'C05p02470' => 'bna', 'C08p00980' => 'bna', 'C08p00990' => 'bna', 'C08p51030' => 'bna', 'C08p52360' => 'bna', 'C09p09120' => 'bna', 'CAN.G19.15' => 'can', 'CAN.G251.10' => 'can', 'CAN.G251.9' => 'can', 'CAN.G398.24' => 'can', 'CAN.G410.32' => 'can', 'CAN.G881.2' => 'can', 'CANSAT01G3025' => 'cansat', 'CANSAT78G1211' => 'cansat', 'CANSAT78G1218' => 'cansat', 'CANSAT78G1521' => 'cansat', 'CANSAT78G1670' => 'cansat', 'CARHR003600' => 'chi', 'CARHR003610' => 'chi', 'CARHR006290' => 'chi', 'CARHR006430' => 'chi', 'CARHR124110' => 'chi', 'CARHR203870' => 'chi', 'CARHR203880' => 'chi', 'CARHR203890' => 'chi', 'CARHR276880' => 'chi', 'Carub.0001s0346' => 'cru', 'Carub.0001s0347' => 'cru', 'Carub.0001s0607' => 'cru', 'Carub.0003s2768' => 'cru', 'Carub.0003s2769' => 'cru', 'Carub.0004s1178' => 'cru', 'Carub.0006s0806' => 'cru', 'Carub.0006s0807' => 'cru', 'Carub.0006s0808' => 'cru', 'Carub.0008s0501' => 'cru', 'Carub.0008s2379' => 'cru', 'Ca_08655_v3' => 'car', 'Ca_08922_v3' => 'car', 'Ca_08923_v3' => 'car', 'Ca_09119_v3' => 'car', 'Ca_09703_v3' => 'car', 'Ca_09705_v3' => 'car', 'Ca_09835_v3' => 'car', 'Ca_26403_v3' => 'car', 'Ca_30719_v3' => 'car', 'CBR_g17958' => 'cbr', 'CBR_g40516' => 'cbr', 'Cc00_g05350' => 'ccan', 'Cc01_g18690' => 'ccan', 'Cc03_g04830' => 'ccan', 'Cc03_g04850' => 'ccan', 'CDE02G4469' => 'cde', 'CDE06G0883' => 'cde', 'CDE06G1295' => 'cde', 'CDE06G1390' => 'cde', 'CDE07G0584' => 'cde', 'CDE07G1084' => 'cde', 'CDE08G1259' => 'cde', 'Cfa002341' => 'cfa', 'Cfa024337' => 'cfa', 'Ciclev10004749m.g' => 'ccl', 'Ciclev10006127m.g' => 'ccl', 'Ciclev10019720m.g' => 'ccl', 'Ciclev10022652m.g' => 'ccl', 'CiPaw.01G190400' => 'cil', 'CiPaw.01G190500' => 'cil', 'CiPaw.02G116400' => 'cil', 'CiPaw.02G116500' => 'cil', 'CiPaw.04G183000' => 'cil', 'CiPaw.04G183300' => 'cil', 'ClCG05G004610' => 'cla', 'ClCG05G004620' => 'cla', 'ClCG06G006730' => 'cla', 'ClCG06G006740' => 'cla', 'ClCG11G003690' => 'cla', 'COL.COLO4_08276' => 'col', 'COL.COLO4_08277' => 'col', 'COL.COLO4_15787' => 'col', 'COL.COLO4_15789' => 'col', 'Cpa.g.c44815' => 'cpa', 'Cpa.g.sc52.144' => 'cpa', 'Cpa.g.sc58.46' => 'cpa', 'Cpa.g.sc58.47' => 'cpa', 'Cre08.g360900' => 'cre', 'CsaV3_2G013030' => 'csa', 'CsaV3_2G013050' => 'csa', 'CsaV3_2G015620' => 'csa', 'CsaV3_3G012590' => 'csa', 'CsaV3_3G012600' => 'csa', 'CSS0001641' => 'camsi', 'CSS0008310' => 'camsi', 'CSS0013011' => 'camsi', 'CSS0017147' => 'camsi', 'CSS0022970' => 'camsi', 'CSS0025655' => 'camsi', 'CSS0028665' => 'camsi', 'CSS0029117' => 'camsi', 'CSS0032024' => 'camsi', 'CSS0039681' => 'camsi', 'CSS0046516' => 'camsi', 'CSS0050307' => 'camsi', 'DCAR_005871' => 'dca', 'DCAR_007342' => 'dca', 'DCAR_024228' => 'dca', 'DCAR_027277' => 'dca', 'DCAR_030718' => 'dca', 'Dinv20287' => 'din', 'Dinv22461' => 'din', 'Dinv22464' => 'din', 'Dinv29912' => 'din', 'Dinv29913' => 'din', 'Dinv34580' => 'din', 'Dinv34582' => 'din', 'Dinv44632' => 'din', 'Duzib052G0266' => 'dzi', 'Duzib133G0907' => 'dzi', 'Duzib133G1034' => 'dzi', 'Duzib138G0207' => 'dzi', 'Duzib138G0491' => 'dzi', 'Duzib151G0812' => 'dzi', 'Duzib151G1166' => 'dzi', 'Duzib168G0192' => 'dzi', 'Duzib211G0077' => 'dzi', 'Duzib212G0429' => 'dzi', 'Duzib212G0472' => 'dzi', 'ECA233G2617' => 'eca', 'ECA236G4188' => 'eca', 'ECA240G0936' => 'eca', 'ECA240G1129' => 'eca', 'ECA247G0623' => 'eca', 'EL10Ac5g10451' => 'bvu', 'EL10Ac5g10453' => 'bvu', 'EL10Ac5g10894' => 'bvu', 'Eucgr.H00192' => 'egr', 'Eucgr.H00193' => 'egr', 'Eucgr.H00194' => 'egr', 'Eucgr.J01562' => 'egr', 'Eucgr.K03301' => 'egr', 'FAN02G0632' => 'fan', 'FAN05G5378' => 'fan', 'FAN09G3247' => 'fan', 'FAN12G0435' => 'fan', 'FAN12G2426' => 'fan', 'FAN14G1707' => 'fan', 'FAN14G4725' => 'fan', 'FAN15G2071' => 'fan', 'FAN17G3065' => 'fan', 'FAN19G1376' => 'fan', 'FAN20G0354' => 'fan', 'FAN20G2429' => 'fan', 'FAN20G2658' => 'fan', 'FAN24G2343' => 'fan', 'FAN27G2362' => 'fan', 'FAN28G1765' => 'fan', 'FvH4_1g16020' => 'fve', 'FvH4_2g04890' => 'fve', 'FvH4_2g22270' => 'fve', 'FvH4_4g02630' => 'fve', 'FvH4_4g02640' => 'fve', 'FvH4_6g02650' => 'fve', 'Glyma.02G140600' => 'gma', 'Glyma.03G159900' => 'gma', 'Glyma.05G234800' => 'gma', 'Glyma.07G269600' => 'gma', 'Glyma.08G042300' => 'gma', 'Glyma.10G033500' => 'gma', 'Glyma.10G185200' => 'gma', 'Glyma.17G004300' => 'gma', 'Glyma.19G161900' => 'gma', 'Glyma.20G205100' => 'gma', 'Glyma.20G205200' => 'gma', 'Gohir.A01G139101' => 'ghi', 'Gohir.A02G035600' => 'ghi', 'Gohir.A02G117901' => 'ghi', 'Gohir.A07G210100' => 'ghi', 'Gohir.A07G210200' => 'ghi', 'Gohir.A08G061100' => 'ghi', 'Gohir.A09G223000' => 'ghi', 'Gohir.A09G223100' => 'ghi', 'Gohir.A10G113900' => 'ghi', 'Gohir.A10G114000' => 'ghi', 'Gohir.D02G042300' => 'ghi', 'Gohir.D07G216100' => 'ghi', 'Gohir.D07G216200' => 'ghi', 'Gohir.D08G070400' => 'ghi', 'Gohir.D09G225000' => 'ghi', 'Gohir.D09G225100' => 'ghi', 'Gohir.D10G152300' => 'ghi', 'Gohir.D10G153200' => 'ghi', 'Gohir.D11G133701' => 'ghi', 'Gorai.004G074100' => 'gra', 'Gorai.005G046800' => 'gra', 'Gorai.006G246500' => 'gra', 'Gorai.006G246600' => 'gra', 'Gorai.007G142900' => 'gra', 'Gorai.011G171000' => 'gra', 'Gorai.011G171100' => 'gra', 'Gorai.013G104300' => 'gra', 'Gorai.013G104400' => 'gra', 'GSVIVG01000754001' => 'vvi', 'GSVIVG01000756001' => 'vvi', 'GSVIVG01010903001' => 'vvi', 'GSVIVG01017623001' => 'vvi', 'GSVIVG01018113001' => 'vvi', 'GSVIVG01018116001' => 'vvi', 'GSVIVG01018118001' => 'vvi', 'HanXRQChr03g0076211' => 'han', 'HanXRQChr03g0092431' => 'han', 'HanXRQChr03g0092441' => 'han', 'HanXRQChr03g0092591' => 'han', 'HanXRQChr03g0092671' => 'han', 'HanXRQChr03g0092681' => 'han', 'HanXRQChr03g0092691' => 'han', 'HanXRQChr03g0092701' => 'han', 'HanXRQChr03g0092721' => 'han', 'HanXRQChr03g0092731' => 'han', 'HanXRQChr04g0113681' => 'han', 'HanXRQChr10g0281371' => 'han', 'HanXRQChr11g0337141' => 'han', 'HanXRQChr13g0424521' => 'han', 'HanXRQChr13g0424531' => 'han', 'HanXRQChr13g0424541' => 'han', 'HanXRQChr16g0498221' => 'han', 'Haze_04377' => 'cav', 'Haze_11298' => 'cav', 'Haze_24547' => 'cav', 'Haze_24550' => 'cav', 'Haze_26587' => 'cav', 'Hma1.2p1_0650F.1_g195410' => 'hma', 'Hma1.2p1_0893F.1_g233470' => 'hma', 'HPP92_006508' => 'vpl', 'HPP92_024780' => 'vpl', 'Hund02688' => 'sun', 'Hund09380' => 'sun', 'Hund09381' => 'sun', 'Hund09832' => 'sun', 'Hund09833' => 'sun', 'Hund11351' => 'sun', 'Hund11513' => 'sun', 'Lalb_Chr06g0162591' => 'lal', 'Lalb_Chr06g0162601' => 'lal', 'Lalb_Chr06g0169321' => 'lal', 'Lalb_Chr09g0330951' => 'lal', 'Lalb_Chr16g0387631' => 'lal', 'Lalb_Chr21g0306241' => 'lal', 'Lalb_Chr25g0290051' => 'lal', 'Lalb_Chr25g0290061' => 'lal', 'Lalb_Chr25g0290071' => 'lal', 'Lj1g0003876' => 'lja', 'Lj1P1207T36' => 'lonja', 'Lj2C1156G12' => 'lonja', 'Lj3A793G39' => 'lonja', 'Lj3C580G2' => 'lonja', 'Lj3C780G2' => 'lonja', 'Lj3C780T4' => 'lonja', 'Lj3C793G9' => 'lonja', 'Lj4g0012960' => 'lja', 'Lj5g0021252' => 'lja', 'Lj5g0021484' => 'lja', 'Lj5g0024528' => 'lja', 'Lj6A399T12' => 'lonja', 'Lj6A656G65' => 'lonja', 'Lsat_1_v5_gn_3_125500' => 'lsa', 'Lsat_1_v5_gn_3_125540' => 'lsa', 'Lsat_1_v5_gn_5_72701' => 'lsa', 'Lsat_1_v5_gn_8_91560' => 'lsa', 'Lsat_1_v5_gn_9_9640' => 'lsa', 'Manes.01G200600' => 'mes', 'Manes.01G200700' => 'mes', 'Manes.03G168900' => 'mes', 'Manes.03G169000' => 'mes', 'Manes.05G085801' => 'mes', 'Manes.05G086200' => 'mes', 'Manes.15G036700' => 'mes', 'Manes.15G036900' => 'mes', 'Mapoly0004s0172' => 'mpo', 'Mapoly0023s0001' => 'mpo', 'Mapoly0142s0012' => 'mpo', 'MBI01_g32854_MAGBIO' => 'mbi', 'MBI11_g24427_MAGBIO' => 'mbi', 'MBI11_g47319_MAGBIO' => 'mbi', 'MCO01G433' => 'mco', 'MD00G1187800' => 'mdo', 'MD04G1226500' => 'mdo', 'MD05G1203900' => 'mdo', 'MD10G1191100' => 'mdo', 'MD12G1243500' => 'mdo', 'MD13G1207000' => 'mdo', 'MD13G1207100' => 'mdo', 'MD16G1208600' => 'mdo', 'Medtr1g050352' => 'mtr', 'Medtr1g070385' => 'mtr', 'Medtr1g070450' => 'mtr', 'Medtr1g075200' => 'mtr', 'Medtr1g075250' => 'mtr', 'Medtr1g075260' => 'mtr', 'Medtr1g475250' => 'mtr', 'Medtr4g075450' => 'mtr', 'Medtr7g096300' => 'mtr', 'Medtr8g105110' => 'mtr', 'MELO3C006470.2' => 'cme', 'MELO3C006471.2' => 'cme', 'MELO3C020772.2' => 'cme', 'MELO3C026780.2' => 'cme', 'MELO3C026781.2' => 'cme', 'Migut.D00390' => 'egut', 'Migut.G00435' => 'egut', 'Migut.G00436' => 'egut', 'Migut.G00718' => 'egut', 'MSTRG.21891' => 'ama', 'MSTRG.26910' => 'ama', 'MSTRG.4099' => 'ama', 'MSTRG.9925' => 'ama', 'Nitab4.5_0000165g0010' => 'nta', 'Nitab4.5_0000209g0180' => 'nta', 'Nitab4.5_0000244g0440' => 'nta', 'Nitab4.5_0000525g0220' => 'nta', 'Nitab4.5_0001597g0020' => 'nta', 'Nitab4.5_0001878g0040' => 'nta', 'Nitab4.5_0001878g0060' => 'nta', 'Nitab4.5_0002838g0100' => 'nta', 'Nitab4.5_0002838g0120' => 'nta', 'Nitab4.5_0004798g0030' => 'nta', 'Nitab4.5_0005420g0010' => 'nta', 'Nitab4.5_0005507g0010' => 'nta', 'Nitab4.5_0005574g0020' => 'nta', 'Nitab4.5_0005838g0010' => 'nta', 'Nitab4.5_0010580g0020' => 'nta', 'Nn1g02599' => 'nnu', 'Nn1g02608' => 'nnu', 'Nn3g17742' => 'nnu', 'Nn3g19534' => 'nnu', 'Nn3g19535' => 'nnu', 'Oeu008790.1' => 'oeu', 'Oeu008792.1' => 'oeu', 'Oeu032590.1' => 'oeu', 'Oeu035349.1' => 'oeu', 'Oeu049791.1' => 'oeu', 'Os01g0774500' => 'osa', 'Os03g0628800' => 'osa', 'Os03g0798600' => 'osa', 'Os05g0508800' => 'osa', 'Peaxi162Scf00036g02018' => 'pax', 'Peaxi162Scf00578g00032' => 'pax', 'Peaxi162Scf00578g00317' => 'pax', 'Peaxi162Scf00785g00114' => 'pax', 'Peaxi162Scf00813g00119' => 'pax', 'Peaxi162Scf00906g00227' => 'pax', 'PGR004G0875' => 'pgr', 'PGR004G2424' => 'pgr', 'PGR031G1239' => 'pgr', 'PGR031G2474' => 'pgr', 'PGR044G0423' => 'pgr', 'PGSC0003DMG400001128' => 'stu', 'PGSC0003DMG400007336' => 'stu', 'PGSC0003DMG400016318' => 'stu', 'PGSC0003DMG400016319' => 'stu', 'PGSC0003DMG400018074' => 'stu', 'Phvul.001G157700' => 'pvu', 'Phvul.002G148550' => 'pvu', 'Phvul.002G320200' => 'pvu', 'Phvul.003G089200' => 'pvu', 'Phvul.007G126000' => 'pvu', 'Phvul.007G126100' => 'pvu', 'Phvul.007G178000' => 'pvu', 'Phvul.007G178200' => 'pvu', 'Potri.002G043000' => 'ptr', 'Potri.002G043200' => 'ptr', 'Potri.003G123750' => 'ptr', 'Potri.005G055401' => 'ptr', 'Potri.005G219700' => 'ptr', 'Potri.005G220000' => 'ptr', 'Potri.008G161901' => 'ptr', 'Potri.008G162000' => 'ptr', 'Potri.008G162400' => 'ptr', 'Potri.010G076900' => 'ptr', 'Pp3c12_9180' => 'ppa', 'Pp3c13_19770' => 'ppa', 'Pp3c14_22950' => 'ppa', 'Pp3c16_12160' => 'ppa', 'Pp3c27_7820' => 'ppa', 'Pp3c2_3490' => 'ppa', 'Pp3c3_23700' => 'ppa', 'Pp3c3_36520' => 'ppa', 'Pp3c4_15250' => 'ppa', 'PRCOL_00007002' => 'pco', 'Prupe.1G030600' => 'ppe', 'Prupe.1G030700' => 'ppe', 'Prupe.6G345200' => 'ppe', 'Prupe.8G230300' => 'ppe', 'Prupe.8G230500' => 'ppe', 'Psat3g059600' => 'psa', 'Psat5g200920' => 'psa', 'Psat6g056440' => 'psa', 'Psat6g057360' => 'psa', 'Psat6g134120' => 'psa', 'Psat6g134160' => 'psa', 'Psat7g008640' => 'psa', 'Psat7g185240' => 'psa', 'PSO017G1330' => 'pso', 'PSO063G6097' => 'pso', 'PSO170G0835' => 'pso', 'PSO170G2499' => 'pso', 'PSO210G5058' => 'pso', 'PSO210G6154' => 'pso', 'PSO585G0031' => 'pso', 'PSO832G0264' => 'pso', 'PSO832G4288' => 'pso', 'QL03p027355' => 'qlo', 'QL03p027430' => 'qlo', 'QL04p081380' => 'qlo', 'QL06p015642' => 'qlo', 'QL06p015650' => 'qlo', 'QL06p015686' => 'qlo', 'QL12p042927' => 'qlo', 'QL93p1863_0035' => 'qlo', 'RcHm_v2.0_Chr3g0450581' => 'rch', 'RcHm_v2.0_Chr4g0390371' => 'rch', 'RcHm_v2.0_Chr4g0390381' => 'rch', 'RcHm_v2.0_Chr4g0390491' => 'rch', 'RcHm_v2.0_Chr4g0390501' => 'rch', 'RcHm_v2.0_Chr6g0289231' => 'rch', 'Rhsim04G0190400' => 'rsi', 'Rhsim04G0190500' => 'rsi', 'Rhsim04G0190600' => 'rsi', 'Rhsim13G0031400' => 'rsi', 'Rhsim13G0165600' => 'rsi', 'RhsimUnG0114600' => 'rsi', 'RhsimUnG0114700' => 'rsi', 'Sabra02G0034800' => 'sbr', 'Sabra02G0035100' => 'sbr', 'Sabra05G0168600' => 'sbr', 'Sabra05G0168800' => 'sbr', 'Sabra08G0123700' => 'sbr', 'Sabra10G0031900' => 'sbr', 'Sabra13G0039000' => 'sbr', 'SalBow2G0782' => 'sbo', 'SalBow2G1403' => 'sbo', 'SalBow4G0074' => 'sbo', 'SalBow4G2635' => 'sbo', 'SalBow5G3010' => 'sbo', 'Sc05g0000870' => 'sci', 'Sc05g0000890' => 'sci', 'Sc13g0005000' => 'sci', 'Sc13g0005030' => 'sci', 'Sc19g0003790' => 'sci', 'Sc19g0003800' => 'sci', 'Sed0003467' => 'sed', 'Sed0009355' => 'sed', 'Sed0009894' => 'sed', 'Sed0011972' => 'sed', 'Sed0021483' => 'sed', 'Sed0021750' => 'sed', 'Sed0026279' => 'sed', 'SEGI_05312' => 'sgi', 'SEGI_10112' => 'sgi', 'SEGI_15835' => 'sgi', 'SEGI_30386' => 'sgi', 'SEGI_34122' => 'sgi', 'SEGI_35063' => 'sgi', 'SGA_v2.0_scaffold101G29794' => 'sas', 'SGA_v2.0_scaffold1G00573' => 'sas', 'SGA_v2.0_scaffold79G25637' => 'sas', 'SGA_v2.0_scaffold88G27283' => 'sas', 'SGA_v2.0_scaffold88G27285' => 'sas', 'SGA_v2.0_scaffold88G27331' => 'sas', 'SHI09937' => 'shi', 'SMO119G0302' => 'smo', 'SMO137G0231' => 'smo', 'SMO367G1151' => 'smo', 'Solyc02g082000.3' => 'sly', 'Solyc06g031670.3' => 'sly', 'Solyc06g053810.3' => 'sly', 'Solyc07g025457.1' => 'sly', 'Solyc08g059740.1' => 'sly', 'Solyc08g059750.3' => 'sly', 'Solyc09g083370.3' => 'sly', 'Solyc12g038950.3' => 'sly', 'Sopen02g026630' => 'spe', 'Sopen06g018930' => 'spe', 'Sopen06g018940' => 'spe', 'Sopen08g009460' => 'spe', 'Sopen09g032290' => 'spe', 'Sp1g03080' => 'spa', 'Sp1g03090' => 'spa', 'Sp1g05480' => 'spa', 'Sp2g07860' => 'spa', 'Sp2g08430' => 'spa', 'Sp2g08440' => 'spa', 'Sp2g26200' => 'spa', 'Sp4g13170' => 'spa', 'Sp6g33840' => 'spa', 'SpUn1204_0010' => 'spa', 'TAR365G0908' => 'tar', 'TAR381G1270' => 'tar', 'TAR381G1651' => 'tar', 'TAR625G1131' => 'tar', 'TAR633G0962' => 'tar', 'TAR633G1729' => 'tar', 'TAR633G1864' => 'tar', 'TAR636G0221' => 'tar', 'TAR636G0314' => 'tar', 'TAR636G3202' => 'tar', 'THA.LOC104800805' => 'tha', 'THA.LOC104801096' => 'tha', 'THA.LOC104801555' => 'tha', 'THA.LOC104808491' => 'tha', 'THA.LOC104808595' => 'tha', 'THA.LOC104815985' => 'tha', 'THA.LOC104822250' => 'tha', 'THA.LOC104826071' => 'tha', 'Thecc.01G265200' => 'tca', 'Thecc.01G265300' => 'tca', 'Thecc.01G265700' => 'tca', 'Thecc.03G109100' => 'tca', 'Thecc.04G245900' => 'tca', 'Thecc.04G246000' => 'tca', 'Thhalv10003334m.g' => 'esa', 'Thhalv10005508m.g' => 'esa', 'Thhalv10005643m.g' => 'esa', 'Thhalv10007316m.g' => 'esa', 'Thhalv10009006m.g' => 'esa', 'Thhalv10009309m.g' => 'esa', 'Thhalv10014917m.g' => 'esa', 'Thhalv10014919m.g' => 'esa', 'Thhalv10015393m.g' => 'esa', 'Thhalv10016515m.g' => 'esa', 'Thhalv10029242m.g' => 'esa', 'TPR.G16654' => 'tpr', 'TPR.G20589' => 'tpr', 'TPR.G23029' => 'tpr', 'TPR.G27731' => 'tpr', 'TPR.G28889' => 'tpr', 'TPR.G28899' => 'tpr', 'TPR.G30846' => 'tpr', 'TPR.G5452' => 'tpr', 'TPR.G5713' => 'tpr', 'TPR.G9046' => 'tpr', 'TPR.G9061' => 'tpr', 'TWI09G1075' => 'twi', 'TWI12G0806' => 'twi', 'TWI18G0108' => 'twi', 'TWI53G1361' => 'twi', 'TWI73G0185' => 'twi', 'TWI73G0427' => 'twi', 'unitig_37.g12001' => 'ugi', 'unitig_747.g21660' => 'ugi', 'unitig_748.g7232' => 'ugi', 'unitig_748.g7315' => 'ugi', 'unitig_85.g27262' => 'ugi', 'unitig_92.g28220' => 'ugi', 'vmacro02632' => 'vma', 'vmacro08410' => 'vma', 'vmacro08411' => 'vma', 'vmacro15407' => 'vma', 'VMungo0251G3619' => 'vmu', 'VMungo0720G1204' => 'vmu', 'VMungo0720G1918' => 'vmu', 'VMungo0720G2387' => 'vmu', 'VMungo0720G2961' => 'vmu', 'VMungo1215G2154' => 'vmu', 'VMungo1383G2411' => 'vmu', 'Zm00001eb051130' => 'zma', 'Zm00001eb116830' => 'zma', 'Zm00001eb116850' => 'zma', 'Zm00001eb151740' => 'zma', 'Zm00001eb292360' => 'zma', 'Zm00001eb301640' => 'zma' ) $gf_id = 'HOM05D000856' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000856' ) $data_identifier = 'HOM05D000856' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 13, 'ath' => (int) 10, 'atr' => (int) 1, 'acertr' => (int) 8, 'cqu' => (int) 6, 'bca' => (int) 21, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 11, 'car' => (int) 9, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 8, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 5, 'fan' => (int) 16, 'fve' => (int) 6, 'gma' => (int) 11, 'ghi' => (int) 19, 'gra' => (int) 9, 'vvi' => (int) 7, 'han' => (int) 17, 'cav' => (int) 5, 'hma' => (int) 2, 'vpl' => (int) 2, 'sun' => (int) 7, 'lal' => (int) 9, 'lja' => (int) 5, 'lonja' => (int) 9, 'lsa' => (int) 5, 'mes' => (int) 8, 'mpo' => (int) 3, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 10, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 15, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 9, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 9, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 6, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 5, 'spa' => (int) 10, 'tar' => (int) 10, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 11, 'tpr' => (int) 11, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 4, 'vmu' => (int) 7, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb301640' $species_info = array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ) $local_species = 'cansat' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000856', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p00010' => 'bna', 'A03p04160' => 'bna', 'A03p17160' => 'bna', 'A04p23370' => 'bna', 'A05p14860' => 'bna', 'A08p37020' => 'bna', 'A09p08050' => 'bna', 'A09p66800' => 'bna', 'A09p67940' => 'bna', 'A10p02680' => 'bna', 'A10p05320' => 'bna', 'Aa31LG1G20560' => 'aar', 'Aa31LG1G20610' => 'aar', 'Aa31LG1G7810' => 'aar', 'Aa31LG5G3590' => 'aar', 'Aa31LG5G6140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3819' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4683' => 'aag', 'Actinidia04480' => 'ach', 'Actinidia05466' => 'ach', 'Actinidia08445' => 'ach', 'Actinidia21170' => 'ach', 'Actinidia24812' => 'ach', 'Actinidia24951' => 'ach', 'Actinidia40088' => 'ach', 'Ah.02g111660' => 'amhyb', 'Ah.11g048900' => 'amhyb', 'Ah.11g049910' => 'amhyb', 'AL1G13870' => 'aly', 'AL1G13880' => 'aly', 'AL1G16760' => 'aly', 'AL390U10020' => 'aly', 'AL4G25520' => 'aly', 'AL6G19890' => 'aly', 'AL6G19900' => 'aly', 'AL6G19910' => 'aly', 'AL8G40100' => 'aly', 'Aqoxy2G03562' => 'aox', 'Aqoxy5G00316' => 'aox', 'Aqoxy5G00926' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1628KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1H403S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2FU6SJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.882I6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8YRY2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YN1SN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AF70II' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZA8L1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F916KL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHRD8H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KTZ8QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S22EMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8M29T' => 'arhy', 'AT1G04270' => 'ath', 'AT1G04280' => 'ath', 'AT1G06750' => 'ath', 'AT1G33850' => 'ath', 'AT2G30630' => 'ath', 'AT5G09490' => 'ath', 'AT5G09500' => 'ath', 'AT5G09510' => 'ath', 'AT5G43640' => 'ath', 'AT5G63070' => 'ath', 'ATR0605G315' => 'atr', 'Atru.chr11.175' => 'acertr', 'Atru.chr11.653' => 'acertr', 'Atru.chr3.1616' => 'acertr', 'Atru.chr4.2230' => 'acertr', 'Atru.chr4.2232' => 'acertr', 'Atru.chr5.1598' => 'acertr', 'Atru.chr5.1600' => 'acertr', 'Atru.chr5.2188' => 'acertr', 'AUR62008326' => 'cqu', 'AUR62011922' => 'cqu', 'AUR62011924' => 'cqu', 'AUR62021771' => 'cqu', 'AUR62032237' => 'cqu', 'AUR62032240' => 'cqu', 'BcaB01g05572' => 'bca', 'BcaB02g10337' => 'bca', 'BcaB04g19944' => 'bca', 'BcaB05g21548' => 'bca', 'BcaB05g21549' => 'bca', 'BcaB05g23227' => 'bca', 'BcaB06g26256' => 'bca', 'BcaB06g26257' => 'bca', 'BcaB06g28379' => 'bca', 'BcaC02g11159' => 'bca', 'BcaC03g13258' => 'bca', 'BcaC03g13259' => 'bca', 'BcaC05g24456' => 'bca', 'BcaC05g24457' => 'bca', 'BcaC07g36922' => 'bca', 'BcaC07g36923' => 'bca', 'BcaC07g42050' => 'bca', 'BcaC07g42176' => 'bca', 'BcaC07g42195' => 'bca', 'BcaC07g42196' => 'bca', 'BcaNung06674' => 'bca', 'BolC2t06351H' => 'bol', 'BolC2t06352H' => 'bol', 'BolC3t12993H' => 'bol', 'BolC4t23525H' => 'bol', 'BolC4t27475H' => 'bol', 'BolC5t29025H' => 'bol', 'BolC5t29026H' => 'bol', 'BolC8t46898H' => 'bol', 'BolC8t46899H' => 'bol', 'BolC8t52630H' => 'bol', 'BolC8t52765H' => 'bol', 'BolC9t53824H' => 'bol', 'BraA03t09760Z' => 'bra', 'BraA03t10990Z' => 'bra', 'BraA05t20413Z' => 'bra', 'BraA08t35602Z' => 'bra', 'BraA09t36458Z' => 'bra', 'BraA09t42018Z' => 'bra', 'BraA09t42129Z' => 'bra', 'BraA10t42536Z' => 'bra', 'BraA10t42537Z' => 'bra', 'C01p10690' => 'bna', 'C02p03890' => 'bna', 'C02p03900' => 'bna', 'C03p04620' => 'bna', 'C04p19870' => 'bna', 'C04p59670' => 'bna', 'C05p02460' => 'bna', 'C05p02470' => 'bna', 'C08p00980' => 'bna', 'C08p00990' => 'bna', 'C08p51030' => 'bna', 'C08p52360' => 'bna', 'C09p09120' => 'bna', 'CAN.G19.15' => 'can', 'CAN.G251.10' => 'can', 'CAN.G251.9' => 'can', 'CAN.G398.24' => 'can', 'CAN.G410.32' => 'can', 'CAN.G881.2' => 'can', 'CANSAT01G3025' => 'cansat', 'CANSAT78G1211' => 'cansat', 'CANSAT78G1218' => 'cansat', 'CANSAT78G1521' => 'cansat', 'CANSAT78G1670' => 'cansat', 'CARHR003600' => 'chi', 'CARHR003610' => 'chi', 'CARHR006290' => 'chi', 'CARHR006430' => 'chi', 'CARHR124110' => 'chi', 'CARHR203870' => 'chi', 'CARHR203880' => 'chi', 'CARHR203890' => 'chi', 'CARHR276880' => 'chi', 'Carub.0001s0346' => 'cru', 'Carub.0001s0347' => 'cru', 'Carub.0001s0607' => 'cru', 'Carub.0003s2768' => 'cru', 'Carub.0003s2769' => 'cru', 'Carub.0004s1178' => 'cru', 'Carub.0006s0806' => 'cru', 'Carub.0006s0807' => 'cru', 'Carub.0006s0808' => 'cru', 'Carub.0008s0501' => 'cru', 'Carub.0008s2379' => 'cru', 'Ca_08655_v3' => 'car', 'Ca_08922_v3' => 'car', 'Ca_08923_v3' => 'car', 'Ca_09119_v3' => 'car', 'Ca_09703_v3' => 'car', 'Ca_09705_v3' => 'car', 'Ca_09835_v3' => 'car', 'Ca_26403_v3' => 'car', 'Ca_30719_v3' => 'car', 'CBR_g17958' => 'cbr', 'CBR_g40516' => 'cbr', 'Cc00_g05350' => 'ccan', 'Cc01_g18690' => 'ccan', 'Cc03_g04830' => 'ccan', 'Cc03_g04850' => 'ccan', 'CDE02G4469' => 'cde', 'CDE06G0883' => 'cde', 'CDE06G1295' => 'cde', 'CDE06G1390' => 'cde', 'CDE07G0584' => 'cde', 'CDE07G1084' => 'cde', 'CDE08G1259' => 'cde', 'Cfa002341' => 'cfa', 'Cfa024337' => 'cfa', 'Ciclev10004749m.g' => 'ccl', 'Ciclev10006127m.g' => 'ccl', 'Ciclev10019720m.g' => 'ccl', 'Ciclev10022652m.g' => 'ccl', 'CiPaw.01G190400' => 'cil', 'CiPaw.01G190500' => 'cil', 'CiPaw.02G116400' => 'cil', 'CiPaw.02G116500' => 'cil', 'CiPaw.04G183000' => 'cil', 'CiPaw.04G183300' => 'cil', 'ClCG05G004610' => 'cla', 'ClCG05G004620' => 'cla', 'ClCG06G006730' => 'cla', 'ClCG06G006740' => 'cla', 'ClCG11G003690' => 'cla', 'COL.COLO4_08276' => 'col', 'COL.COLO4_08277' => 'col', 'COL.COLO4_15787' => 'col', 'COL.COLO4_15789' => 'col', 'Cpa.g.c44815' => 'cpa', 'Cpa.g.sc52.144' => 'cpa', 'Cpa.g.sc58.46' => 'cpa', 'Cpa.g.sc58.47' => 'cpa', 'Cre08.g360900' => 'cre', 'CsaV3_2G013030' => 'csa', 'CsaV3_2G013050' => 'csa', 'CsaV3_2G015620' => 'csa', 'CsaV3_3G012590' => 'csa', 'CsaV3_3G012600' => 'csa', 'CSS0001641' => 'camsi', 'CSS0008310' => 'camsi', 'CSS0013011' => 'camsi', 'CSS0017147' => 'camsi', 'CSS0022970' => 'camsi', 'CSS0025655' => 'camsi', 'CSS0028665' => 'camsi', 'CSS0029117' => 'camsi', 'CSS0032024' => 'camsi', 'CSS0039681' => 'camsi', 'CSS0046516' => 'camsi', 'CSS0050307' => 'camsi', 'DCAR_005871' => 'dca', 'DCAR_007342' => 'dca', 'DCAR_024228' => 'dca', 'DCAR_027277' => 'dca', 'DCAR_030718' => 'dca', 'Dinv20287' => 'din', 'Dinv22461' => 'din', 'Dinv22464' => 'din', 'Dinv29912' => 'din', 'Dinv29913' => 'din', 'Dinv34580' => 'din', 'Dinv34582' => 'din', 'Dinv44632' => 'din', 'Duzib052G0266' => 'dzi', 'Duzib133G0907' => 'dzi', 'Duzib133G1034' => 'dzi', 'Duzib138G0207' => 'dzi', 'Duzib138G0491' => 'dzi', 'Duzib151G0812' => 'dzi', 'Duzib151G1166' => 'dzi', 'Duzib168G0192' => 'dzi', 'Duzib211G0077' => 'dzi', 'Duzib212G0429' => 'dzi', 'Duzib212G0472' => 'dzi', 'ECA233G2617' => 'eca', 'ECA236G4188' => 'eca', 'ECA240G0936' => 'eca', 'ECA240G1129' => 'eca', 'ECA247G0623' => 'eca', 'EL10Ac5g10451' => 'bvu', 'EL10Ac5g10453' => 'bvu', 'EL10Ac5g10894' => 'bvu', 'Eucgr.H00192' => 'egr', 'Eucgr.H00193' => 'egr', 'Eucgr.H00194' => 'egr', 'Eucgr.J01562' => 'egr', 'Eucgr.K03301' => 'egr', 'FAN02G0632' => 'fan', 'FAN05G5378' => 'fan', 'FAN09G3247' => 'fan', 'FAN12G0435' => 'fan', 'FAN12G2426' => 'fan', 'FAN14G1707' => 'fan', 'FAN14G4725' => 'fan', 'FAN15G2071' => 'fan', 'FAN17G3065' => 'fan', 'FAN19G1376' => 'fan', 'FAN20G0354' => 'fan', 'FAN20G2429' => 'fan', 'FAN20G2658' => 'fan', 'FAN24G2343' => 'fan', 'FAN27G2362' => 'fan', 'FAN28G1765' => 'fan', 'FvH4_1g16020' => 'fve', 'FvH4_2g04890' => 'fve', 'FvH4_2g22270' => 'fve', 'FvH4_4g02630' => 'fve', 'FvH4_4g02640' => 'fve', 'FvH4_6g02650' => 'fve', 'Glyma.02G140600' => 'gma', 'Glyma.03G159900' => 'gma', 'Glyma.05G234800' => 'gma', 'Glyma.07G269600' => 'gma', 'Glyma.08G042300' => 'gma', 'Glyma.10G033500' => 'gma', 'Glyma.10G185200' => 'gma', 'Glyma.17G004300' => 'gma', 'Glyma.19G161900' => 'gma', 'Glyma.20G205100' => 'gma', 'Glyma.20G205200' => 'gma', 'Gohir.A01G139101' => 'ghi', 'Gohir.A02G035600' => 'ghi', 'Gohir.A02G117901' => 'ghi', 'Gohir.A07G210100' => 'ghi', 'Gohir.A07G210200' => 'ghi', 'Gohir.A08G061100' => 'ghi', 'Gohir.A09G223000' => 'ghi', 'Gohir.A09G223100' => 'ghi', 'Gohir.A10G113900' => 'ghi', 'Gohir.A10G114000' => 'ghi', 'Gohir.D02G042300' => 'ghi', 'Gohir.D07G216100' => 'ghi', 'Gohir.D07G216200' => 'ghi', 'Gohir.D08G070400' => 'ghi', 'Gohir.D09G225000' => 'ghi', 'Gohir.D09G225100' => 'ghi', 'Gohir.D10G152300' => 'ghi', 'Gohir.D10G153200' => 'ghi', 'Gohir.D11G133701' => 'ghi', 'Gorai.004G074100' => 'gra', 'Gorai.005G046800' => 'gra', 'Gorai.006G246500' => 'gra', 'Gorai.006G246600' => 'gra', 'Gorai.007G142900' => 'gra', 'Gorai.011G171000' => 'gra', 'Gorai.011G171100' => 'gra', 'Gorai.013G104300' => 'gra', 'Gorai.013G104400' => 'gra', 'GSVIVG01000754001' => 'vvi', 'GSVIVG01000756001' => 'vvi', 'GSVIVG01010903001' => 'vvi', 'GSVIVG01017623001' => 'vvi', 'GSVIVG01018113001' => 'vvi', 'GSVIVG01018116001' => 'vvi', 'GSVIVG01018118001' => 'vvi', 'HanXRQChr03g0076211' => 'han', 'HanXRQChr03g0092431' => 'han', 'HanXRQChr03g0092441' => 'han', 'HanXRQChr03g0092591' => 'han', 'HanXRQChr03g0092671' => 'han', 'HanXRQChr03g0092681' => 'han', 'HanXRQChr03g0092691' => 'han', 'HanXRQChr03g0092701' => 'han', 'HanXRQChr03g0092721' => 'han', 'HanXRQChr03g0092731' => 'han', 'HanXRQChr04g0113681' => 'han', 'HanXRQChr10g0281371' => 'han', 'HanXRQChr11g0337141' => 'han', 'HanXRQChr13g0424521' => 'han', 'HanXRQChr13g0424531' => 'han', 'HanXRQChr13g0424541' => 'han', 'HanXRQChr16g0498221' => 'han', 'Haze_04377' => 'cav', 'Haze_11298' => 'cav', 'Haze_24547' => 'cav', 'Haze_24550' => 'cav', 'Haze_26587' => 'cav', 'Hma1.2p1_0650F.1_g195410' => 'hma', 'Hma1.2p1_0893F.1_g233470' => 'hma', 'HPP92_006508' => 'vpl', 'HPP92_024780' => 'vpl', 'Hund02688' => 'sun', 'Hund09380' => 'sun', 'Hund09381' => 'sun', 'Hund09832' => 'sun', 'Hund09833' => 'sun', 'Hund11351' => 'sun', 'Hund11513' => 'sun', 'Lalb_Chr06g0162591' => 'lal', 'Lalb_Chr06g0162601' => 'lal', 'Lalb_Chr06g0169321' => 'lal', 'Lalb_Chr09g0330951' => 'lal', 'Lalb_Chr16g0387631' => 'lal', 'Lalb_Chr21g0306241' => 'lal', 'Lalb_Chr25g0290051' => 'lal', 'Lalb_Chr25g0290061' => 'lal', 'Lalb_Chr25g0290071' => 'lal', 'Lj1g0003876' => 'lja', 'Lj1P1207T36' => 'lonja', 'Lj2C1156G12' => 'lonja', 'Lj3A793G39' => 'lonja', 'Lj3C580G2' => 'lonja', 'Lj3C780G2' => 'lonja', 'Lj3C780T4' => 'lonja', 'Lj3C793G9' => 'lonja', 'Lj4g0012960' => 'lja', 'Lj5g0021252' => 'lja', 'Lj5g0021484' => 'lja', 'Lj5g0024528' => 'lja', 'Lj6A399T12' => 'lonja', 'Lj6A656G65' => 'lonja', 'Lsat_1_v5_gn_3_125500' => 'lsa', 'Lsat_1_v5_gn_3_125540' => 'lsa', 'Lsat_1_v5_gn_5_72701' => 'lsa', 'Lsat_1_v5_gn_8_91560' => 'lsa', 'Lsat_1_v5_gn_9_9640' => 'lsa', 'Manes.01G200600' => 'mes', 'Manes.01G200700' => 'mes', 'Manes.03G168900' => 'mes', 'Manes.03G169000' => 'mes', 'Manes.05G085801' => 'mes', 'Manes.05G086200' => 'mes', 'Manes.15G036700' => 'mes', 'Manes.15G036900' => 'mes', 'Mapoly0004s0172' => 'mpo', 'Mapoly0023s0001' => 'mpo', 'Mapoly0142s0012' => 'mpo', 'MBI01_g32854_MAGBIO' => 'mbi', 'MBI11_g24427_MAGBIO' => 'mbi', 'MBI11_g47319_MAGBIO' => 'mbi', 'MCO01G433' => 'mco', 'MD00G1187800' => 'mdo', 'MD04G1226500' => 'mdo', 'MD05G1203900' => 'mdo', 'MD10G1191100' => 'mdo', 'MD12G1243500' => 'mdo', 'MD13G1207000' => 'mdo', 'MD13G1207100' => 'mdo', 'MD16G1208600' => 'mdo', 'Medtr1g050352' => 'mtr', 'Medtr1g070385' => 'mtr', 'Medtr1g070450' => 'mtr', 'Medtr1g075200' => 'mtr', 'Medtr1g075250' => 'mtr', 'Medtr1g075260' => 'mtr', 'Medtr1g475250' => 'mtr', 'Medtr4g075450' => 'mtr', 'Medtr7g096300' => 'mtr', 'Medtr8g105110' => 'mtr', 'MELO3C006470.2' => 'cme', 'MELO3C006471.2' => 'cme', 'MELO3C020772.2' => 'cme', 'MELO3C026780.2' => 'cme', 'MELO3C026781.2' => 'cme', 'Migut.D00390' => 'egut', 'Migut.G00435' => 'egut', 'Migut.G00436' => 'egut', 'Migut.G00718' => 'egut', 'MSTRG.21891' => 'ama', 'MSTRG.26910' => 'ama', 'MSTRG.4099' => 'ama', 'MSTRG.9925' => 'ama', 'Nitab4.5_0000165g0010' => 'nta', 'Nitab4.5_0000209g0180' => 'nta', 'Nitab4.5_0000244g0440' => 'nta', 'Nitab4.5_0000525g0220' => 'nta', 'Nitab4.5_0001597g0020' => 'nta', 'Nitab4.5_0001878g0040' => 'nta', 'Nitab4.5_0001878g0060' => 'nta', 'Nitab4.5_0002838g0100' => 'nta', 'Nitab4.5_0002838g0120' => 'nta', 'Nitab4.5_0004798g0030' => 'nta', 'Nitab4.5_0005420g0010' => 'nta', 'Nitab4.5_0005507g0010' => 'nta', 'Nitab4.5_0005574g0020' => 'nta', 'Nitab4.5_0005838g0010' => 'nta', 'Nitab4.5_0010580g0020' => 'nta', 'Nn1g02599' => 'nnu', 'Nn1g02608' => 'nnu', 'Nn3g17742' => 'nnu', 'Nn3g19534' => 'nnu', 'Nn3g19535' => 'nnu', 'Oeu008790.1' => 'oeu', 'Oeu008792.1' => 'oeu', 'Oeu032590.1' => 'oeu', 'Oeu035349.1' => 'oeu', 'Oeu049791.1' => 'oeu', 'Os01g0774500' => 'osa', 'Os03g0628800' => 'osa', 'Os03g0798600' => 'osa', 'Os05g0508800' => 'osa', 'Peaxi162Scf00036g02018' => 'pax', 'Peaxi162Scf00578g00032' => 'pax', 'Peaxi162Scf00578g00317' => 'pax', 'Peaxi162Scf00785g00114' => 'pax', 'Peaxi162Scf00813g00119' => 'pax', 'Peaxi162Scf00906g00227' => 'pax', 'PGR004G0875' => 'pgr', 'PGR004G2424' => 'pgr', 'PGR031G1239' => 'pgr', 'PGR031G2474' => 'pgr', 'PGR044G0423' => 'pgr', 'PGSC0003DMG400001128' => 'stu', 'PGSC0003DMG400007336' => 'stu', 'PGSC0003DMG400016318' => 'stu', 'PGSC0003DMG400016319' => 'stu', 'PGSC0003DMG400018074' => 'stu', 'Phvul.001G157700' => 'pvu', 'Phvul.002G148550' => 'pvu', 'Phvul.002G320200' => 'pvu', 'Phvul.003G089200' => 'pvu', 'Phvul.007G126000' => 'pvu', 'Phvul.007G126100' => 'pvu', 'Phvul.007G178000' => 'pvu', 'Phvul.007G178200' => 'pvu', 'Potri.002G043000' => 'ptr', 'Potri.002G043200' => 'ptr', 'Potri.003G123750' => 'ptr', 'Potri.005G055401' => 'ptr', 'Potri.005G219700' => 'ptr', 'Potri.005G220000' => 'ptr', 'Potri.008G161901' => 'ptr', 'Potri.008G162000' => 'ptr', 'Potri.008G162400' => 'ptr', 'Potri.010G076900' => 'ptr', 'Pp3c12_9180' => 'ppa', 'Pp3c13_19770' => 'ppa', 'Pp3c14_22950' => 'ppa', 'Pp3c16_12160' => 'ppa', 'Pp3c27_7820' => 'ppa', 'Pp3c2_3490' => 'ppa', 'Pp3c3_23700' => 'ppa', 'Pp3c3_36520' => 'ppa', 'Pp3c4_15250' => 'ppa', 'PRCOL_00007002' => 'pco', 'Prupe.1G030600' => 'ppe', 'Prupe.1G030700' => 'ppe', 'Prupe.6G345200' => 'ppe', 'Prupe.8G230300' => 'ppe', 'Prupe.8G230500' => 'ppe', 'Psat3g059600' => 'psa', 'Psat5g200920' => 'psa', 'Psat6g056440' => 'psa', 'Psat6g057360' => 'psa', 'Psat6g134120' => 'psa', 'Psat6g134160' => 'psa', 'Psat7g008640' => 'psa', 'Psat7g185240' => 'psa', 'PSO017G1330' => 'pso', 'PSO063G6097' => 'pso', 'PSO170G0835' => 'pso', 'PSO170G2499' => 'pso', 'PSO210G5058' => 'pso', 'PSO210G6154' => 'pso', 'PSO585G0031' => 'pso', 'PSO832G0264' => 'pso', 'PSO832G4288' => 'pso', 'QL03p027355' => 'qlo', 'QL03p027430' => 'qlo', 'QL04p081380' => 'qlo', 'QL06p015642' => 'qlo', 'QL06p015650' => 'qlo', 'QL06p015686' => 'qlo', 'QL12p042927' => 'qlo', 'QL93p1863_0035' => 'qlo', 'RcHm_v2.0_Chr3g0450581' => 'rch', 'RcHm_v2.0_Chr4g0390371' => 'rch', 'RcHm_v2.0_Chr4g0390381' => 'rch', 'RcHm_v2.0_Chr4g0390491' => 'rch', 'RcHm_v2.0_Chr4g0390501' => 'rch', 'RcHm_v2.0_Chr6g0289231' => 'rch', 'Rhsim04G0190400' => 'rsi', 'Rhsim04G0190500' => 'rsi', 'Rhsim04G0190600' => 'rsi', 'Rhsim13G0031400' => 'rsi', 'Rhsim13G0165600' => 'rsi', 'RhsimUnG0114600' => 'rsi', 'RhsimUnG0114700' => 'rsi', 'Sabra02G0034800' => 'sbr', 'Sabra02G0035100' => 'sbr', 'Sabra05G0168600' => 'sbr', 'Sabra05G0168800' => 'sbr', 'Sabra08G0123700' => 'sbr', 'Sabra10G0031900' => 'sbr', 'Sabra13G0039000' => 'sbr', 'SalBow2G0782' => 'sbo', 'SalBow2G1403' => 'sbo', 'SalBow4G0074' => 'sbo', 'SalBow4G2635' => 'sbo', 'SalBow5G3010' => 'sbo', 'Sc05g0000870' => 'sci', 'Sc05g0000890' => 'sci', 'Sc13g0005000' => 'sci', 'Sc13g0005030' => 'sci', 'Sc19g0003790' => 'sci', 'Sc19g0003800' => 'sci', 'Sed0003467' => 'sed', 'Sed0009355' => 'sed', 'Sed0009894' => 'sed', 'Sed0011972' => 'sed', 'Sed0021483' => 'sed', 'Sed0021750' => 'sed', 'Sed0026279' => 'sed', 'SEGI_05312' => 'sgi', 'SEGI_10112' => 'sgi', 'SEGI_15835' => 'sgi', 'SEGI_30386' => 'sgi', 'SEGI_34122' => 'sgi', 'SEGI_35063' => 'sgi', 'SGA_v2.0_scaffold101G29794' => 'sas', 'SGA_v2.0_scaffold1G00573' => 'sas', 'SGA_v2.0_scaffold79G25637' => 'sas', 'SGA_v2.0_scaffold88G27283' => 'sas', 'SGA_v2.0_scaffold88G27285' => 'sas', 'SGA_v2.0_scaffold88G27331' => 'sas', 'SHI09937' => 'shi', 'SMO119G0302' => 'smo', 'SMO137G0231' => 'smo', 'SMO367G1151' => 'smo', 'Solyc02g082000.3' => 'sly', 'Solyc06g031670.3' => 'sly', 'Solyc06g053810.3' => 'sly', 'Solyc07g025457.1' => 'sly', 'Solyc08g059740.1' => 'sly', 'Solyc08g059750.3' => 'sly', 'Solyc09g083370.3' => 'sly', 'Solyc12g038950.3' => 'sly', 'Sopen02g026630' => 'spe', 'Sopen06g018930' => 'spe', 'Sopen06g018940' => 'spe', 'Sopen08g009460' => 'spe', 'Sopen09g032290' => 'spe', 'Sp1g03080' => 'spa', 'Sp1g03090' => 'spa', 'Sp1g05480' => 'spa', 'Sp2g07860' => 'spa', 'Sp2g08430' => 'spa', 'Sp2g08440' => 'spa', 'Sp2g26200' => 'spa', 'Sp4g13170' => 'spa', 'Sp6g33840' => 'spa', 'SpUn1204_0010' => 'spa', 'TAR365G0908' => 'tar', 'TAR381G1270' => 'tar', 'TAR381G1651' => 'tar', 'TAR625G1131' => 'tar', 'TAR633G0962' => 'tar', 'TAR633G1729' => 'tar', 'TAR633G1864' => 'tar', 'TAR636G0221' => 'tar', 'TAR636G0314' => 'tar', 'TAR636G3202' => 'tar', 'THA.LOC104800805' => 'tha', 'THA.LOC104801096' => 'tha', 'THA.LOC104801555' => 'tha', 'THA.LOC104808491' => 'tha', 'THA.LOC104808595' => 'tha', 'THA.LOC104815985' => 'tha', 'THA.LOC104822250' => 'tha', 'THA.LOC104826071' => 'tha', 'Thecc.01G265200' => 'tca', 'Thecc.01G265300' => 'tca', 'Thecc.01G265700' => 'tca', 'Thecc.03G109100' => 'tca', 'Thecc.04G245900' => 'tca', 'Thecc.04G246000' => 'tca', 'Thhalv10003334m.g' => 'esa', 'Thhalv10005508m.g' => 'esa', 'Thhalv10005643m.g' => 'esa', 'Thhalv10007316m.g' => 'esa', 'Thhalv10009006m.g' => 'esa', 'Thhalv10009309m.g' => 'esa', 'Thhalv10014917m.g' => 'esa', 'Thhalv10014919m.g' => 'esa', 'Thhalv10015393m.g' => 'esa', 'Thhalv10016515m.g' => 'esa', 'Thhalv10029242m.g' => 'esa', 'TPR.G16654' => 'tpr', 'TPR.G20589' => 'tpr', 'TPR.G23029' => 'tpr', 'TPR.G27731' => 'tpr', 'TPR.G28889' => 'tpr', 'TPR.G28899' => 'tpr', 'TPR.G30846' => 'tpr', 'TPR.G5452' => 'tpr', 'TPR.G5713' => 'tpr', 'TPR.G9046' => 'tpr', 'TPR.G9061' => 'tpr', 'TWI09G1075' => 'twi', 'TWI12G0806' => 'twi', 'TWI18G0108' => 'twi', 'TWI53G1361' => 'twi', 'TWI73G0185' => 'twi', 'TWI73G0427' => 'twi', 'unitig_37.g12001' => 'ugi', 'unitig_747.g21660' => 'ugi', 'unitig_748.g7232' => 'ugi', 'unitig_748.g7315' => 'ugi', 'unitig_85.g27262' => 'ugi', 'unitig_92.g28220' => 'ugi', 'vmacro02632' => 'vma', 'vmacro08410' => 'vma', 'vmacro08411' => 'vma', 'vmacro15407' => 'vma', 'VMungo0251G3619' => 'vmu', 'VMungo0720G1204' => 'vmu', 'VMungo0720G1918' => 'vmu', 'VMungo0720G2387' => 'vmu', 'VMungo0720G2961' => 'vmu', 'VMungo1215G2154' => 'vmu', 'VMungo1383G2411' => 'vmu', 'Zm00001eb051130' => 'zma', 'Zm00001eb116830' => 'zma', 'Zm00001eb116850' => 'zma', 'Zm00001eb151740' => 'zma', 'Zm00001eb292360' => 'zma', 'Zm00001eb301640' => 'zma' ), 'gf_id' => 'HOM05D000856', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000856' ), 'data_identifier' => 'HOM05D000856', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000856', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p00010' => 'bna', 'A03p04160' => 'bna', 'A03p17160' => 'bna', 'A04p23370' => 'bna', 'A05p14860' => 'bna', 'A08p37020' => 'bna', 'A09p08050' => 'bna', 'A09p66800' => 'bna', 'A09p67940' => 'bna', 'A10p02680' => 'bna', 'A10p05320' => 'bna', 'Aa31LG1G20560' => 'aar', 'Aa31LG1G20610' => 'aar', 'Aa31LG1G7810' => 'aar', 'Aa31LG5G3590' => 'aar', 'Aa31LG5G6140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3819' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4683' => 'aag', 'Actinidia04480' => 'ach', 'Actinidia05466' => 'ach', 'Actinidia08445' => 'ach', 'Actinidia21170' => 'ach', 'Actinidia24812' => 'ach', 'Actinidia24951' => 'ach', 'Actinidia40088' => 'ach', 'Ah.02g111660' => 'amhyb', 'Ah.11g048900' => 'amhyb', 'Ah.11g049910' => 'amhyb', 'AL1G13870' => 'aly', 'AL1G13880' => 'aly', 'AL1G16760' => 'aly', 'AL390U10020' => 'aly', 'AL4G25520' => 'aly', 'AL6G19890' => 'aly', 'AL6G19900' => 'aly', 'AL6G19910' => 'aly', 'AL8G40100' => 'aly', 'Aqoxy2G03562' => 'aox', 'Aqoxy5G00316' => 'aox', 'Aqoxy5G00926' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1628KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1H403S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2FU6SJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.882I6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8YRY2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YN1SN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AF70II' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZA8L1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F916KL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHRD8H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KTZ8QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S22EMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8M29T' => 'arhy', 'AT1G04270' => 'ath', 'AT1G04280' => 'ath', 'AT1G06750' => 'ath', 'AT1G33850' => 'ath', 'AT2G30630' => 'ath', 'AT5G09490' => 'ath', 'AT5G09500' => 'ath', 'AT5G09510' => 'ath', 'AT5G43640' => 'ath', 'AT5G63070' => 'ath', 'ATR0605G315' => 'atr', 'Atru.chr11.175' => 'acertr', 'Atru.chr11.653' => 'acertr', 'Atru.chr3.1616' => 'acertr', 'Atru.chr4.2230' => 'acertr', 'Atru.chr4.2232' => 'acertr', 'Atru.chr5.1598' => 'acertr', 'Atru.chr5.1600' => 'acertr', 'Atru.chr5.2188' => 'acertr', 'AUR62008326' => 'cqu', 'AUR62011922' => 'cqu', 'AUR62011924' => 'cqu', 'AUR62021771' => 'cqu', 'AUR62032237' => 'cqu', 'AUR62032240' => 'cqu', 'BcaB01g05572' => 'bca', 'BcaB02g10337' => 'bca', 'BcaB04g19944' => 'bca', 'BcaB05g21548' => 'bca', 'BcaB05g21549' => 'bca', 'BcaB05g23227' => 'bca', 'BcaB06g26256' => 'bca', 'BcaB06g26257' => 'bca', 'BcaB06g28379' => 'bca', 'BcaC02g11159' => 'bca', 'BcaC03g13258' => 'bca', 'BcaC03g13259' => 'bca', 'BcaC05g24456' => 'bca', 'BcaC05g24457' => 'bca', 'BcaC07g36922' => 'bca', 'BcaC07g36923' => 'bca', 'BcaC07g42050' => 'bca', 'BcaC07g42176' => 'bca', 'BcaC07g42195' => 'bca', 'BcaC07g42196' => 'bca', 'BcaNung06674' => 'bca', 'BolC2t06351H' => 'bol', 'BolC2t06352H' => 'bol', 'BolC3t12993H' => 'bol', 'BolC4t23525H' => 'bol', 'BolC4t27475H' => 'bol', 'BolC5t29025H' => 'bol', 'BolC5t29026H' => 'bol', 'BolC8t46898H' => 'bol', 'BolC8t46899H' => 'bol', 'BolC8t52630H' => 'bol', 'BolC8t52765H' => 'bol', 'BolC9t53824H' => 'bol', 'BraA03t09760Z' => 'bra', 'BraA03t10990Z' => 'bra', 'BraA05t20413Z' => 'bra', 'BraA08t35602Z' => 'bra', 'BraA09t36458Z' => 'bra', 'BraA09t42018Z' => 'bra', 'BraA09t42129Z' => 'bra', 'BraA10t42536Z' => 'bra', 'BraA10t42537Z' => 'bra', 'C01p10690' => 'bna', 'C02p03890' => 'bna', 'C02p03900' => 'bna', 'C03p04620' => 'bna', 'C04p19870' => 'bna', 'C04p59670' => 'bna', 'C05p02460' => 'bna', 'C05p02470' => 'bna', 'C08p00980' => 'bna', 'C08p00990' => 'bna', 'C08p51030' => 'bna', 'C08p52360' => 'bna', 'C09p09120' => 'bna', 'CAN.G19.15' => 'can', 'CAN.G251.10' => 'can', 'CAN.G251.9' => 'can', 'CAN.G398.24' => 'can', 'CAN.G410.32' => 'can', 'CAN.G881.2' => 'can', 'CANSAT01G3025' => 'cansat', 'CANSAT78G1211' => 'cansat', 'CANSAT78G1218' => 'cansat', 'CANSAT78G1521' => 'cansat', 'CANSAT78G1670' => 'cansat', 'CARHR003600' => 'chi', 'CARHR003610' => 'chi', 'CARHR006290' => 'chi', 'CARHR006430' => 'chi', 'CARHR124110' => 'chi', 'CARHR203870' => 'chi', 'CARHR203880' => 'chi', 'CARHR203890' => 'chi', 'CARHR276880' => 'chi', 'Carub.0001s0346' => 'cru', 'Carub.0001s0347' => 'cru', 'Carub.0001s0607' => 'cru', 'Carub.0003s2768' => 'cru', 'Carub.0003s2769' => 'cru', 'Carub.0004s1178' => 'cru', 'Carub.0006s0806' => 'cru', 'Carub.0006s0807' => 'cru', 'Carub.0006s0808' => 'cru', 'Carub.0008s0501' => 'cru', 'Carub.0008s2379' => 'cru', 'Ca_08655_v3' => 'car', 'Ca_08922_v3' => 'car', 'Ca_08923_v3' => 'car', 'Ca_09119_v3' => 'car', 'Ca_09703_v3' => 'car', 'Ca_09705_v3' => 'car', 'Ca_09835_v3' => 'car', 'Ca_26403_v3' => 'car', 'Ca_30719_v3' => 'car', 'CBR_g17958' => 'cbr', 'CBR_g40516' => 'cbr', 'Cc00_g05350' => 'ccan', 'Cc01_g18690' => 'ccan', 'Cc03_g04830' => 'ccan', 'Cc03_g04850' => 'ccan', 'CDE02G4469' => 'cde', 'CDE06G0883' => 'cde', 'CDE06G1295' => 'cde', 'CDE06G1390' => 'cde', 'CDE07G0584' => 'cde', 'CDE07G1084' => 'cde', 'CDE08G1259' => 'cde', 'Cfa002341' => 'cfa', 'Cfa024337' => 'cfa', 'Ciclev10004749m.g' => 'ccl', 'Ciclev10006127m.g' => 'ccl', 'Ciclev10019720m.g' => 'ccl', 'Ciclev10022652m.g' => 'ccl', 'CiPaw.01G190400' => 'cil', 'CiPaw.01G190500' => 'cil', 'CiPaw.02G116400' => 'cil', 'CiPaw.02G116500' => 'cil', 'CiPaw.04G183000' => 'cil', 'CiPaw.04G183300' => 'cil', 'ClCG05G004610' => 'cla', 'ClCG05G004620' => 'cla', 'ClCG06G006730' => 'cla', 'ClCG06G006740' => 'cla', 'ClCG11G003690' => 'cla', 'COL.COLO4_08276' => 'col', 'COL.COLO4_08277' => 'col', 'COL.COLO4_15787' => 'col', 'COL.COLO4_15789' => 'col', 'Cpa.g.c44815' => 'cpa', 'Cpa.g.sc52.144' => 'cpa', 'Cpa.g.sc58.46' => 'cpa', 'Cpa.g.sc58.47' => 'cpa', 'Cre08.g360900' => 'cre', 'CsaV3_2G013030' => 'csa', 'CsaV3_2G013050' => 'csa', 'CsaV3_2G015620' => 'csa', 'CsaV3_3G012590' => 'csa', 'CsaV3_3G012600' => 'csa', 'CSS0001641' => 'camsi', 'CSS0008310' => 'camsi', 'CSS0013011' => 'camsi', 'CSS0017147' => 'camsi', 'CSS0022970' => 'camsi', 'CSS0025655' => 'camsi', 'CSS0028665' => 'camsi', 'CSS0029117' => 'camsi', 'CSS0032024' => 'camsi', 'CSS0039681' => 'camsi', 'CSS0046516' => 'camsi', 'CSS0050307' => 'camsi', 'DCAR_005871' => 'dca', 'DCAR_007342' => 'dca', 'DCAR_024228' => 'dca', 'DCAR_027277' => 'dca', 'DCAR_030718' => 'dca', 'Dinv20287' => 'din', 'Dinv22461' => 'din', 'Dinv22464' => 'din', 'Dinv29912' => 'din', 'Dinv29913' => 'din', 'Dinv34580' => 'din', 'Dinv34582' => 'din', 'Dinv44632' => 'din', 'Duzib052G0266' => 'dzi', 'Duzib133G0907' => 'dzi', 'Duzib133G1034' => 'dzi', 'Duzib138G0207' => 'dzi', 'Duzib138G0491' => 'dzi', 'Duzib151G0812' => 'dzi', 'Duzib151G1166' => 'dzi', 'Duzib168G0192' => 'dzi', 'Duzib211G0077' => 'dzi', 'Duzib212G0429' => 'dzi', 'Duzib212G0472' => 'dzi', 'ECA233G2617' => 'eca', 'ECA236G4188' => 'eca', 'ECA240G0936' => 'eca', 'ECA240G1129' => 'eca', 'ECA247G0623' => 'eca', 'EL10Ac5g10451' => 'bvu', 'EL10Ac5g10453' => 'bvu', 'EL10Ac5g10894' => 'bvu', 'Eucgr.H00192' => 'egr', 'Eucgr.H00193' => 'egr', 'Eucgr.H00194' => 'egr', 'Eucgr.J01562' => 'egr', 'Eucgr.K03301' => 'egr', 'FAN02G0632' => 'fan', 'FAN05G5378' => 'fan', 'FAN09G3247' => 'fan', 'FAN12G0435' => 'fan', 'FAN12G2426' => 'fan', 'FAN14G1707' => 'fan', 'FAN14G4725' => 'fan', 'FAN15G2071' => 'fan', 'FAN17G3065' => 'fan', 'FAN19G1376' => 'fan', 'FAN20G0354' => 'fan', 'FAN20G2429' => 'fan', 'FAN20G2658' => 'fan', 'FAN24G2343' => 'fan', 'FAN27G2362' => 'fan', 'FAN28G1765' => 'fan', 'FvH4_1g16020' => 'fve', 'FvH4_2g04890' => 'fve', 'FvH4_2g22270' => 'fve', 'FvH4_4g02630' => 'fve', 'FvH4_4g02640' => 'fve', 'FvH4_6g02650' => 'fve', 'Glyma.02G140600' => 'gma', 'Glyma.03G159900' => 'gma', 'Glyma.05G234800' => 'gma', 'Glyma.07G269600' => 'gma', 'Glyma.08G042300' => 'gma', 'Glyma.10G033500' => 'gma', 'Glyma.10G185200' => 'gma', 'Glyma.17G004300' => 'gma', 'Glyma.19G161900' => 'gma', 'Glyma.20G205100' => 'gma', 'Glyma.20G205200' => 'gma', 'Gohir.A01G139101' => 'ghi', 'Gohir.A02G035600' => 'ghi', 'Gohir.A02G117901' => 'ghi', 'Gohir.A07G210100' => 'ghi', 'Gohir.A07G210200' => 'ghi', 'Gohir.A08G061100' => 'ghi', 'Gohir.A09G223000' => 'ghi', 'Gohir.A09G223100' => 'ghi', 'Gohir.A10G113900' => 'ghi', 'Gohir.A10G114000' => 'ghi', 'Gohir.D02G042300' => 'ghi', 'Gohir.D07G216100' => 'ghi', 'Gohir.D07G216200' => 'ghi', 'Gohir.D08G070400' => 'ghi', 'Gohir.D09G225000' => 'ghi', 'Gohir.D09G225100' => 'ghi', 'Gohir.D10G152300' => 'ghi', 'Gohir.D10G153200' => 'ghi', 'Gohir.D11G133701' => 'ghi', 'Gorai.004G074100' => 'gra', 'Gorai.005G046800' => 'gra', 'Gorai.006G246500' => 'gra', 'Gorai.006G246600' => 'gra', 'Gorai.007G142900' => 'gra', 'Gorai.011G171000' => 'gra', 'Gorai.011G171100' => 'gra', 'Gorai.013G104300' => 'gra', 'Gorai.013G104400' => 'gra', 'GSVIVG01000754001' => 'vvi', 'GSVIVG01000756001' => 'vvi', 'GSVIVG01010903001' => 'vvi', 'GSVIVG01017623001' => 'vvi', 'GSVIVG01018113001' => 'vvi', 'GSVIVG01018116001' => 'vvi', 'GSVIVG01018118001' => 'vvi', 'HanXRQChr03g0076211' => 'han', 'HanXRQChr03g0092431' => 'han', 'HanXRQChr03g0092441' => 'han', 'HanXRQChr03g0092591' => 'han', 'HanXRQChr03g0092671' => 'han', 'HanXRQChr03g0092681' => 'han', 'HanXRQChr03g0092691' => 'han', 'HanXRQChr03g0092701' => 'han', 'HanXRQChr03g0092721' => 'han', 'HanXRQChr03g0092731' => 'han', 'HanXRQChr04g0113681' => 'han', 'HanXRQChr10g0281371' => 'han', 'HanXRQChr11g0337141' => 'han', 'HanXRQChr13g0424521' => 'han', 'HanXRQChr13g0424531' => 'han', 'HanXRQChr13g0424541' => 'han', 'HanXRQChr16g0498221' => 'han', 'Haze_04377' => 'cav', 'Haze_11298' => 'cav', 'Haze_24547' => 'cav', 'Haze_24550' => 'cav', 'Haze_26587' => 'cav', 'Hma1.2p1_0650F.1_g195410' => 'hma', 'Hma1.2p1_0893F.1_g233470' => 'hma', 'HPP92_006508' => 'vpl', 'HPP92_024780' => 'vpl', 'Hund02688' => 'sun', 'Hund09380' => 'sun', 'Hund09381' => 'sun', 'Hund09832' => 'sun', 'Hund09833' => 'sun', 'Hund11351' => 'sun', 'Hund11513' => 'sun', 'Lalb_Chr06g0162591' => 'lal', 'Lalb_Chr06g0162601' => 'lal', 'Lalb_Chr06g0169321' => 'lal', 'Lalb_Chr09g0330951' => 'lal', 'Lalb_Chr16g0387631' => 'lal', 'Lalb_Chr21g0306241' => 'lal', 'Lalb_Chr25g0290051' => 'lal', 'Lalb_Chr25g0290061' => 'lal', 'Lalb_Chr25g0290071' => 'lal', 'Lj1g0003876' => 'lja', 'Lj1P1207T36' => 'lonja', 'Lj2C1156G12' => 'lonja', 'Lj3A793G39' => 'lonja', 'Lj3C580G2' => 'lonja', 'Lj3C780G2' => 'lonja', 'Lj3C780T4' => 'lonja', 'Lj3C793G9' => 'lonja', 'Lj4g0012960' => 'lja', 'Lj5g0021252' => 'lja', 'Lj5g0021484' => 'lja', 'Lj5g0024528' => 'lja', 'Lj6A399T12' => 'lonja', 'Lj6A656G65' => 'lonja', 'Lsat_1_v5_gn_3_125500' => 'lsa', 'Lsat_1_v5_gn_3_125540' => 'lsa', 'Lsat_1_v5_gn_5_72701' => 'lsa', 'Lsat_1_v5_gn_8_91560' => 'lsa', 'Lsat_1_v5_gn_9_9640' => 'lsa', 'Manes.01G200600' => 'mes', 'Manes.01G200700' => 'mes', 'Manes.03G168900' => 'mes', 'Manes.03G169000' => 'mes', 'Manes.05G085801' => 'mes', 'Manes.05G086200' => 'mes', 'Manes.15G036700' => 'mes', 'Manes.15G036900' => 'mes', 'Mapoly0004s0172' => 'mpo', 'Mapoly0023s0001' => 'mpo', 'Mapoly0142s0012' => 'mpo', 'MBI01_g32854_MAGBIO' => 'mbi', 'MBI11_g24427_MAGBIO' => 'mbi', 'MBI11_g47319_MAGBIO' => 'mbi', 'MCO01G433' => 'mco', 'MD00G1187800' => 'mdo', 'MD04G1226500' => 'mdo', 'MD05G1203900' => 'mdo', 'MD10G1191100' => 'mdo', 'MD12G1243500' => 'mdo', 'MD13G1207000' => 'mdo', 'MD13G1207100' => 'mdo', 'MD16G1208600' => 'mdo', 'Medtr1g050352' => 'mtr', 'Medtr1g070385' => 'mtr', 'Medtr1g070450' => 'mtr', 'Medtr1g075200' => 'mtr', 'Medtr1g075250' => 'mtr', 'Medtr1g075260' => 'mtr', 'Medtr1g475250' => 'mtr', 'Medtr4g075450' => 'mtr', 'Medtr7g096300' => 'mtr', 'Medtr8g105110' => 'mtr', 'MELO3C006470.2' => 'cme', 'MELO3C006471.2' => 'cme', 'MELO3C020772.2' => 'cme', 'MELO3C026780.2' => 'cme', 'MELO3C026781.2' => 'cme', 'Migut.D00390' => 'egut', 'Migut.G00435' => 'egut', 'Migut.G00436' => 'egut', 'Migut.G00718' => 'egut', 'MSTRG.21891' => 'ama', 'MSTRG.26910' => 'ama', 'MSTRG.4099' => 'ama', 'MSTRG.9925' => 'ama', 'Nitab4.5_0000165g0010' => 'nta', 'Nitab4.5_0000209g0180' => 'nta', 'Nitab4.5_0000244g0440' => 'nta', 'Nitab4.5_0000525g0220' => 'nta', 'Nitab4.5_0001597g0020' => 'nta', 'Nitab4.5_0001878g0040' => 'nta', 'Nitab4.5_0001878g0060' => 'nta', 'Nitab4.5_0002838g0100' => 'nta', 'Nitab4.5_0002838g0120' => 'nta', 'Nitab4.5_0004798g0030' => 'nta', 'Nitab4.5_0005420g0010' => 'nta', 'Nitab4.5_0005507g0010' => 'nta', 'Nitab4.5_0005574g0020' => 'nta', 'Nitab4.5_0005838g0010' => 'nta', 'Nitab4.5_0010580g0020' => 'nta', 'Nn1g02599' => 'nnu', 'Nn1g02608' => 'nnu', 'Nn3g17742' => 'nnu', 'Nn3g19534' => 'nnu', 'Nn3g19535' => 'nnu', 'Oeu008790.1' => 'oeu', 'Oeu008792.1' => 'oeu', 'Oeu032590.1' => 'oeu', 'Oeu035349.1' => 'oeu', 'Oeu049791.1' => 'oeu', 'Os01g0774500' => 'osa', 'Os03g0628800' => 'osa', 'Os03g0798600' => 'osa', 'Os05g0508800' => 'osa', 'Peaxi162Scf00036g02018' => 'pax', 'Peaxi162Scf00578g00032' => 'pax', 'Peaxi162Scf00578g00317' => 'pax', 'Peaxi162Scf00785g00114' => 'pax', 'Peaxi162Scf00813g00119' => 'pax', 'Peaxi162Scf00906g00227' => 'pax', 'PGR004G0875' => 'pgr', 'PGR004G2424' => 'pgr', 'PGR031G1239' => 'pgr', 'PGR031G2474' => 'pgr', 'PGR044G0423' => 'pgr', 'PGSC0003DMG400001128' => 'stu', 'PGSC0003DMG400007336' => 'stu', 'PGSC0003DMG400016318' => 'stu', 'PGSC0003DMG400016319' => 'stu', 'PGSC0003DMG400018074' => 'stu', 'Phvul.001G157700' => 'pvu', 'Phvul.002G148550' => 'pvu', 'Phvul.002G320200' => 'pvu', 'Phvul.003G089200' => 'pvu', 'Phvul.007G126000' => 'pvu', 'Phvul.007G126100' => 'pvu', 'Phvul.007G178000' => 'pvu', 'Phvul.007G178200' => 'pvu', 'Potri.002G043000' => 'ptr', 'Potri.002G043200' => 'ptr', 'Potri.003G123750' => 'ptr', 'Potri.005G055401' => 'ptr', 'Potri.005G219700' => 'ptr', 'Potri.005G220000' => 'ptr', 'Potri.008G161901' => 'ptr', 'Potri.008G162000' => 'ptr', 'Potri.008G162400' => 'ptr', 'Potri.010G076900' => 'ptr', 'Pp3c12_9180' => 'ppa', 'Pp3c13_19770' => 'ppa', 'Pp3c14_22950' => 'ppa', 'Pp3c16_12160' => 'ppa', 'Pp3c27_7820' => 'ppa', 'Pp3c2_3490' => 'ppa', 'Pp3c3_23700' => 'ppa', 'Pp3c3_36520' => 'ppa', 'Pp3c4_15250' => 'ppa', 'PRCOL_00007002' => 'pco', 'Prupe.1G030600' => 'ppe', 'Prupe.1G030700' => 'ppe', 'Prupe.6G345200' => 'ppe', 'Prupe.8G230300' => 'ppe', 'Prupe.8G230500' => 'ppe', 'Psat3g059600' => 'psa', 'Psat5g200920' => 'psa', 'Psat6g056440' => 'psa', 'Psat6g057360' => 'psa', 'Psat6g134120' => 'psa', 'Psat6g134160' => 'psa', 'Psat7g008640' => 'psa', 'Psat7g185240' => 'psa', 'PSO017G1330' => 'pso', 'PSO063G6097' => 'pso', 'PSO170G0835' => 'pso', 'PSO170G2499' => 'pso', 'PSO210G5058' => 'pso', 'PSO210G6154' => 'pso', 'PSO585G0031' => 'pso', 'PSO832G0264' => 'pso', 'PSO832G4288' => 'pso', 'QL03p027355' => 'qlo', 'QL03p027430' => 'qlo', 'QL04p081380' => 'qlo', 'QL06p015642' => 'qlo', 'QL06p015650' => 'qlo', 'QL06p015686' => 'qlo', 'QL12p042927' => 'qlo', 'QL93p1863_0035' => 'qlo', 'RcHm_v2.0_Chr3g0450581' => 'rch', 'RcHm_v2.0_Chr4g0390371' => 'rch', 'RcHm_v2.0_Chr4g0390381' => 'rch', 'RcHm_v2.0_Chr4g0390491' => 'rch', 'RcHm_v2.0_Chr4g0390501' => 'rch', 'RcHm_v2.0_Chr6g0289231' => 'rch', 'Rhsim04G0190400' => 'rsi', 'Rhsim04G0190500' => 'rsi', 'Rhsim04G0190600' => 'rsi', 'Rhsim13G0031400' => 'rsi', 'Rhsim13G0165600' => 'rsi', 'RhsimUnG0114600' => 'rsi', 'RhsimUnG0114700' => 'rsi', 'Sabra02G0034800' => 'sbr', 'Sabra02G0035100' => 'sbr', 'Sabra05G0168600' => 'sbr', 'Sabra05G0168800' => 'sbr', 'Sabra08G0123700' => 'sbr', 'Sabra10G0031900' => 'sbr', 'Sabra13G0039000' => 'sbr', 'SalBow2G0782' => 'sbo', 'SalBow2G1403' => 'sbo', 'SalBow4G0074' => 'sbo', 'SalBow4G2635' => 'sbo', 'SalBow5G3010' => 'sbo', 'Sc05g0000870' => 'sci', 'Sc05g0000890' => 'sci', 'Sc13g0005000' => 'sci', 'Sc13g0005030' => 'sci', 'Sc19g0003790' => 'sci', 'Sc19g0003800' => 'sci', 'Sed0003467' => 'sed', 'Sed0009355' => 'sed', 'Sed0009894' => 'sed', 'Sed0011972' => 'sed', 'Sed0021483' => 'sed', 'Sed0021750' => 'sed', 'Sed0026279' => 'sed', 'SEGI_05312' => 'sgi', 'SEGI_10112' => 'sgi', 'SEGI_15835' => 'sgi', 'SEGI_30386' => 'sgi', 'SEGI_34122' => 'sgi', 'SEGI_35063' => 'sgi', 'SGA_v2.0_scaffold101G29794' => 'sas', 'SGA_v2.0_scaffold1G00573' => 'sas', 'SGA_v2.0_scaffold79G25637' => 'sas', 'SGA_v2.0_scaffold88G27283' => 'sas', 'SGA_v2.0_scaffold88G27285' => 'sas', 'SGA_v2.0_scaffold88G27331' => 'sas', 'SHI09937' => 'shi', 'SMO119G0302' => 'smo', 'SMO137G0231' => 'smo', 'SMO367G1151' => 'smo', 'Solyc02g082000.3' => 'sly', 'Solyc06g031670.3' => 'sly', 'Solyc06g053810.3' => 'sly', 'Solyc07g025457.1' => 'sly', 'Solyc08g059740.1' => 'sly', 'Solyc08g059750.3' => 'sly', 'Solyc09g083370.3' => 'sly', 'Solyc12g038950.3' => 'sly', 'Sopen02g026630' => 'spe', 'Sopen06g018930' => 'spe', 'Sopen06g018940' => 'spe', 'Sopen08g009460' => 'spe', 'Sopen09g032290' => 'spe', 'Sp1g03080' => 'spa', 'Sp1g03090' => 'spa', 'Sp1g05480' => 'spa', 'Sp2g07860' => 'spa', 'Sp2g08430' => 'spa', 'Sp2g08440' => 'spa', 'Sp2g26200' => 'spa', 'Sp4g13170' => 'spa', 'Sp6g33840' => 'spa', 'SpUn1204_0010' => 'spa', 'TAR365G0908' => 'tar', 'TAR381G1270' => 'tar', 'TAR381G1651' => 'tar', 'TAR625G1131' => 'tar', 'TAR633G0962' => 'tar', 'TAR633G1729' => 'tar', 'TAR633G1864' => 'tar', 'TAR636G0221' => 'tar', 'TAR636G0314' => 'tar', 'TAR636G3202' => 'tar', 'THA.LOC104800805' => 'tha', 'THA.LOC104801096' => 'tha', 'THA.LOC104801555' => 'tha', 'THA.LOC104808491' => 'tha', 'THA.LOC104808595' => 'tha', 'THA.LOC104815985' => 'tha', 'THA.LOC104822250' => 'tha', 'THA.LOC104826071' => 'tha', 'Thecc.01G265200' => 'tca', 'Thecc.01G265300' => 'tca', 'Thecc.01G265700' => 'tca', 'Thecc.03G109100' => 'tca', 'Thecc.04G245900' => 'tca', 'Thecc.04G246000' => 'tca', 'Thhalv10003334m.g' => 'esa', 'Thhalv10005508m.g' => 'esa', 'Thhalv10005643m.g' => 'esa', 'Thhalv10007316m.g' => 'esa', 'Thhalv10009006m.g' => 'esa', 'Thhalv10009309m.g' => 'esa', 'Thhalv10014917m.g' => 'esa', 'Thhalv10014919m.g' => 'esa', 'Thhalv10015393m.g' => 'esa', 'Thhalv10016515m.g' => 'esa', 'Thhalv10029242m.g' => 'esa', 'TPR.G16654' => 'tpr', 'TPR.G20589' => 'tpr', 'TPR.G23029' => 'tpr', 'TPR.G27731' => 'tpr', 'TPR.G28889' => 'tpr', 'TPR.G28899' => 'tpr', 'TPR.G30846' => 'tpr', 'TPR.G5452' => 'tpr', 'TPR.G5713' => 'tpr', 'TPR.G9046' => 'tpr', 'TPR.G9061' => 'tpr', 'TWI09G1075' => 'twi', 'TWI12G0806' => 'twi', 'TWI18G0108' => 'twi', 'TWI53G1361' => 'twi', 'TWI73G0185' => 'twi', 'TWI73G0427' => 'twi', 'unitig_37.g12001' => 'ugi', 'unitig_747.g21660' => 'ugi', 'unitig_748.g7232' => 'ugi', 'unitig_748.g7315' => 'ugi', 'unitig_85.g27262' => 'ugi', 'unitig_92.g28220' => 'ugi', 'vmacro02632' => 'vma', 'vmacro08410' => 'vma', 'vmacro08411' => 'vma', 'vmacro15407' => 'vma', 'VMungo0251G3619' => 'vmu', 'VMungo0720G1204' => 'vmu', 'VMungo0720G1918' => 'vmu', 'VMungo0720G2387' => 'vmu', 'VMungo0720G2961' => 'vmu', 'VMungo1215G2154' => 'vmu', 'VMungo1383G2411' => 'vmu', 'Zm00001eb051130' => 'zma', 'Zm00001eb116830' => 'zma', 'Zm00001eb116850' => 'zma', 'Zm00001eb151740' => 'zma', 'Zm00001eb292360' => 'zma', 'Zm00001eb301640' => 'zma' ) $gf_id = 'HOM05D000856' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000856' ) $data_identifier = 'HOM05D000856' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 13, 'ath' => (int) 10, 'atr' => (int) 1, 'acertr' => (int) 8, 'cqu' => (int) 6, 'bca' => (int) 21, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 11, 'car' => (int) 9, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 8, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 5, 'fan' => (int) 16, 'fve' => (int) 6, 'gma' => (int) 11, 'ghi' => (int) 19, 'gra' => (int) 9, 'vvi' => (int) 7, 'han' => (int) 17, 'cav' => (int) 5, 'hma' => (int) 2, 'vpl' => (int) 2, 'sun' => (int) 7, 'lal' => (int) 9, 'lja' => (int) 5, 'lonja' => (int) 9, 'lsa' => (int) 5, 'mes' => (int) 8, 'mpo' => (int) 3, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 10, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 15, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 9, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 9, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 6, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 5, 'spa' => (int) 10, 'tar' => (int) 10, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 11, 'tpr' => (int) 11, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 4, 'vmu' => (int) 7, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb301640' $species_info = array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ) $local_species = 'cru' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000856', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p00010' => 'bna', 'A03p04160' => 'bna', 'A03p17160' => 'bna', 'A04p23370' => 'bna', 'A05p14860' => 'bna', 'A08p37020' => 'bna', 'A09p08050' => 'bna', 'A09p66800' => 'bna', 'A09p67940' => 'bna', 'A10p02680' => 'bna', 'A10p05320' => 'bna', 'Aa31LG1G20560' => 'aar', 'Aa31LG1G20610' => 'aar', 'Aa31LG1G7810' => 'aar', 'Aa31LG5G3590' => 'aar', 'Aa31LG5G6140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3819' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4683' => 'aag', 'Actinidia04480' => 'ach', 'Actinidia05466' => 'ach', 'Actinidia08445' => 'ach', 'Actinidia21170' => 'ach', 'Actinidia24812' => 'ach', 'Actinidia24951' => 'ach', 'Actinidia40088' => 'ach', 'Ah.02g111660' => 'amhyb', 'Ah.11g048900' => 'amhyb', 'Ah.11g049910' => 'amhyb', 'AL1G13870' => 'aly', 'AL1G13880' => 'aly', 'AL1G16760' => 'aly', 'AL390U10020' => 'aly', 'AL4G25520' => 'aly', 'AL6G19890' => 'aly', 'AL6G19900' => 'aly', 'AL6G19910' => 'aly', 'AL8G40100' => 'aly', 'Aqoxy2G03562' => 'aox', 'Aqoxy5G00316' => 'aox', 'Aqoxy5G00926' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1628KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1H403S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2FU6SJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.882I6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8YRY2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YN1SN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AF70II' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZA8L1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F916KL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHRD8H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KTZ8QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S22EMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8M29T' => 'arhy', 'AT1G04270' => 'ath', 'AT1G04280' => 'ath', 'AT1G06750' => 'ath', 'AT1G33850' => 'ath', 'AT2G30630' => 'ath', 'AT5G09490' => 'ath', 'AT5G09500' => 'ath', 'AT5G09510' => 'ath', 'AT5G43640' => 'ath', 'AT5G63070' => 'ath', 'ATR0605G315' => 'atr', 'Atru.chr11.175' => 'acertr', 'Atru.chr11.653' => 'acertr', 'Atru.chr3.1616' => 'acertr', 'Atru.chr4.2230' => 'acertr', 'Atru.chr4.2232' => 'acertr', 'Atru.chr5.1598' => 'acertr', 'Atru.chr5.1600' => 'acertr', 'Atru.chr5.2188' => 'acertr', 'AUR62008326' => 'cqu', 'AUR62011922' => 'cqu', 'AUR62011924' => 'cqu', 'AUR62021771' => 'cqu', 'AUR62032237' => 'cqu', 'AUR62032240' => 'cqu', 'BcaB01g05572' => 'bca', 'BcaB02g10337' => 'bca', 'BcaB04g19944' => 'bca', 'BcaB05g21548' => 'bca', 'BcaB05g21549' => 'bca', 'BcaB05g23227' => 'bca', 'BcaB06g26256' => 'bca', 'BcaB06g26257' => 'bca', 'BcaB06g28379' => 'bca', 'BcaC02g11159' => 'bca', 'BcaC03g13258' => 'bca', 'BcaC03g13259' => 'bca', 'BcaC05g24456' => 'bca', 'BcaC05g24457' => 'bca', 'BcaC07g36922' => 'bca', 'BcaC07g36923' => 'bca', 'BcaC07g42050' => 'bca', 'BcaC07g42176' => 'bca', 'BcaC07g42195' => 'bca', 'BcaC07g42196' => 'bca', 'BcaNung06674' => 'bca', 'BolC2t06351H' => 'bol', 'BolC2t06352H' => 'bol', 'BolC3t12993H' => 'bol', 'BolC4t23525H' => 'bol', 'BolC4t27475H' => 'bol', 'BolC5t29025H' => 'bol', 'BolC5t29026H' => 'bol', 'BolC8t46898H' => 'bol', 'BolC8t46899H' => 'bol', 'BolC8t52630H' => 'bol', 'BolC8t52765H' => 'bol', 'BolC9t53824H' => 'bol', 'BraA03t09760Z' => 'bra', 'BraA03t10990Z' => 'bra', 'BraA05t20413Z' => 'bra', 'BraA08t35602Z' => 'bra', 'BraA09t36458Z' => 'bra', 'BraA09t42018Z' => 'bra', 'BraA09t42129Z' => 'bra', 'BraA10t42536Z' => 'bra', 'BraA10t42537Z' => 'bra', 'C01p10690' => 'bna', 'C02p03890' => 'bna', 'C02p03900' => 'bna', 'C03p04620' => 'bna', 'C04p19870' => 'bna', 'C04p59670' => 'bna', 'C05p02460' => 'bna', 'C05p02470' => 'bna', 'C08p00980' => 'bna', 'C08p00990' => 'bna', 'C08p51030' => 'bna', 'C08p52360' => 'bna', 'C09p09120' => 'bna', 'CAN.G19.15' => 'can', 'CAN.G251.10' => 'can', 'CAN.G251.9' => 'can', 'CAN.G398.24' => 'can', 'CAN.G410.32' => 'can', 'CAN.G881.2' => 'can', 'CANSAT01G3025' => 'cansat', 'CANSAT78G1211' => 'cansat', 'CANSAT78G1218' => 'cansat', 'CANSAT78G1521' => 'cansat', 'CANSAT78G1670' => 'cansat', 'CARHR003600' => 'chi', 'CARHR003610' => 'chi', 'CARHR006290' => 'chi', 'CARHR006430' => 'chi', 'CARHR124110' => 'chi', 'CARHR203870' => 'chi', 'CARHR203880' => 'chi', 'CARHR203890' => 'chi', 'CARHR276880' => 'chi', 'Carub.0001s0346' => 'cru', 'Carub.0001s0347' => 'cru', 'Carub.0001s0607' => 'cru', 'Carub.0003s2768' => 'cru', 'Carub.0003s2769' => 'cru', 'Carub.0004s1178' => 'cru', 'Carub.0006s0806' => 'cru', 'Carub.0006s0807' => 'cru', 'Carub.0006s0808' => 'cru', 'Carub.0008s0501' => 'cru', 'Carub.0008s2379' => 'cru', 'Ca_08655_v3' => 'car', 'Ca_08922_v3' => 'car', 'Ca_08923_v3' => 'car', 'Ca_09119_v3' => 'car', 'Ca_09703_v3' => 'car', 'Ca_09705_v3' => 'car', 'Ca_09835_v3' => 'car', 'Ca_26403_v3' => 'car', 'Ca_30719_v3' => 'car', 'CBR_g17958' => 'cbr', 'CBR_g40516' => 'cbr', 'Cc00_g05350' => 'ccan', 'Cc01_g18690' => 'ccan', 'Cc03_g04830' => 'ccan', 'Cc03_g04850' => 'ccan', 'CDE02G4469' => 'cde', 'CDE06G0883' => 'cde', 'CDE06G1295' => 'cde', 'CDE06G1390' => 'cde', 'CDE07G0584' => 'cde', 'CDE07G1084' => 'cde', 'CDE08G1259' => 'cde', 'Cfa002341' => 'cfa', 'Cfa024337' => 'cfa', 'Ciclev10004749m.g' => 'ccl', 'Ciclev10006127m.g' => 'ccl', 'Ciclev10019720m.g' => 'ccl', 'Ciclev10022652m.g' => 'ccl', 'CiPaw.01G190400' => 'cil', 'CiPaw.01G190500' => 'cil', 'CiPaw.02G116400' => 'cil', 'CiPaw.02G116500' => 'cil', 'CiPaw.04G183000' => 'cil', 'CiPaw.04G183300' => 'cil', 'ClCG05G004610' => 'cla', 'ClCG05G004620' => 'cla', 'ClCG06G006730' => 'cla', 'ClCG06G006740' => 'cla', 'ClCG11G003690' => 'cla', 'COL.COLO4_08276' => 'col', 'COL.COLO4_08277' => 'col', 'COL.COLO4_15787' => 'col', 'COL.COLO4_15789' => 'col', 'Cpa.g.c44815' => 'cpa', 'Cpa.g.sc52.144' => 'cpa', 'Cpa.g.sc58.46' => 'cpa', 'Cpa.g.sc58.47' => 'cpa', 'Cre08.g360900' => 'cre', 'CsaV3_2G013030' => 'csa', 'CsaV3_2G013050' => 'csa', 'CsaV3_2G015620' => 'csa', 'CsaV3_3G012590' => 'csa', 'CsaV3_3G012600' => 'csa', 'CSS0001641' => 'camsi', 'CSS0008310' => 'camsi', 'CSS0013011' => 'camsi', 'CSS0017147' => 'camsi', 'CSS0022970' => 'camsi', 'CSS0025655' => 'camsi', 'CSS0028665' => 'camsi', 'CSS0029117' => 'camsi', 'CSS0032024' => 'camsi', 'CSS0039681' => 'camsi', 'CSS0046516' => 'camsi', 'CSS0050307' => 'camsi', 'DCAR_005871' => 'dca', 'DCAR_007342' => 'dca', 'DCAR_024228' => 'dca', 'DCAR_027277' => 'dca', 'DCAR_030718' => 'dca', 'Dinv20287' => 'din', 'Dinv22461' => 'din', 'Dinv22464' => 'din', 'Dinv29912' => 'din', 'Dinv29913' => 'din', 'Dinv34580' => 'din', 'Dinv34582' => 'din', 'Dinv44632' => 'din', 'Duzib052G0266' => 'dzi', 'Duzib133G0907' => 'dzi', 'Duzib133G1034' => 'dzi', 'Duzib138G0207' => 'dzi', 'Duzib138G0491' => 'dzi', 'Duzib151G0812' => 'dzi', 'Duzib151G1166' => 'dzi', 'Duzib168G0192' => 'dzi', 'Duzib211G0077' => 'dzi', 'Duzib212G0429' => 'dzi', 'Duzib212G0472' => 'dzi', 'ECA233G2617' => 'eca', 'ECA236G4188' => 'eca', 'ECA240G0936' => 'eca', 'ECA240G1129' => 'eca', 'ECA247G0623' => 'eca', 'EL10Ac5g10451' => 'bvu', 'EL10Ac5g10453' => 'bvu', 'EL10Ac5g10894' => 'bvu', 'Eucgr.H00192' => 'egr', 'Eucgr.H00193' => 'egr', 'Eucgr.H00194' => 'egr', 'Eucgr.J01562' => 'egr', 'Eucgr.K03301' => 'egr', 'FAN02G0632' => 'fan', 'FAN05G5378' => 'fan', 'FAN09G3247' => 'fan', 'FAN12G0435' => 'fan', 'FAN12G2426' => 'fan', 'FAN14G1707' => 'fan', 'FAN14G4725' => 'fan', 'FAN15G2071' => 'fan', 'FAN17G3065' => 'fan', 'FAN19G1376' => 'fan', 'FAN20G0354' => 'fan', 'FAN20G2429' => 'fan', 'FAN20G2658' => 'fan', 'FAN24G2343' => 'fan', 'FAN27G2362' => 'fan', 'FAN28G1765' => 'fan', 'FvH4_1g16020' => 'fve', 'FvH4_2g04890' => 'fve', 'FvH4_2g22270' => 'fve', 'FvH4_4g02630' => 'fve', 'FvH4_4g02640' => 'fve', 'FvH4_6g02650' => 'fve', 'Glyma.02G140600' => 'gma', 'Glyma.03G159900' => 'gma', 'Glyma.05G234800' => 'gma', 'Glyma.07G269600' => 'gma', 'Glyma.08G042300' => 'gma', 'Glyma.10G033500' => 'gma', 'Glyma.10G185200' => 'gma', 'Glyma.17G004300' => 'gma', 'Glyma.19G161900' => 'gma', 'Glyma.20G205100' => 'gma', 'Glyma.20G205200' => 'gma', 'Gohir.A01G139101' => 'ghi', 'Gohir.A02G035600' => 'ghi', 'Gohir.A02G117901' => 'ghi', 'Gohir.A07G210100' => 'ghi', 'Gohir.A07G210200' => 'ghi', 'Gohir.A08G061100' => 'ghi', 'Gohir.A09G223000' => 'ghi', 'Gohir.A09G223100' => 'ghi', 'Gohir.A10G113900' => 'ghi', 'Gohir.A10G114000' => 'ghi', 'Gohir.D02G042300' => 'ghi', 'Gohir.D07G216100' => 'ghi', 'Gohir.D07G216200' => 'ghi', 'Gohir.D08G070400' => 'ghi', 'Gohir.D09G225000' => 'ghi', 'Gohir.D09G225100' => 'ghi', 'Gohir.D10G152300' => 'ghi', 'Gohir.D10G153200' => 'ghi', 'Gohir.D11G133701' => 'ghi', 'Gorai.004G074100' => 'gra', 'Gorai.005G046800' => 'gra', 'Gorai.006G246500' => 'gra', 'Gorai.006G246600' => 'gra', 'Gorai.007G142900' => 'gra', 'Gorai.011G171000' => 'gra', 'Gorai.011G171100' => 'gra', 'Gorai.013G104300' => 'gra', 'Gorai.013G104400' => 'gra', 'GSVIVG01000754001' => 'vvi', 'GSVIVG01000756001' => 'vvi', 'GSVIVG01010903001' => 'vvi', 'GSVIVG01017623001' => 'vvi', 'GSVIVG01018113001' => 'vvi', 'GSVIVG01018116001' => 'vvi', 'GSVIVG01018118001' => 'vvi', 'HanXRQChr03g0076211' => 'han', 'HanXRQChr03g0092431' => 'han', 'HanXRQChr03g0092441' => 'han', 'HanXRQChr03g0092591' => 'han', 'HanXRQChr03g0092671' => 'han', 'HanXRQChr03g0092681' => 'han', 'HanXRQChr03g0092691' => 'han', 'HanXRQChr03g0092701' => 'han', 'HanXRQChr03g0092721' => 'han', 'HanXRQChr03g0092731' => 'han', 'HanXRQChr04g0113681' => 'han', 'HanXRQChr10g0281371' => 'han', 'HanXRQChr11g0337141' => 'han', 'HanXRQChr13g0424521' => 'han', 'HanXRQChr13g0424531' => 'han', 'HanXRQChr13g0424541' => 'han', 'HanXRQChr16g0498221' => 'han', 'Haze_04377' => 'cav', 'Haze_11298' => 'cav', 'Haze_24547' => 'cav', 'Haze_24550' => 'cav', 'Haze_26587' => 'cav', 'Hma1.2p1_0650F.1_g195410' => 'hma', 'Hma1.2p1_0893F.1_g233470' => 'hma', 'HPP92_006508' => 'vpl', 'HPP92_024780' => 'vpl', 'Hund02688' => 'sun', 'Hund09380' => 'sun', 'Hund09381' => 'sun', 'Hund09832' => 'sun', 'Hund09833' => 'sun', 'Hund11351' => 'sun', 'Hund11513' => 'sun', 'Lalb_Chr06g0162591' => 'lal', 'Lalb_Chr06g0162601' => 'lal', 'Lalb_Chr06g0169321' => 'lal', 'Lalb_Chr09g0330951' => 'lal', 'Lalb_Chr16g0387631' => 'lal', 'Lalb_Chr21g0306241' => 'lal', 'Lalb_Chr25g0290051' => 'lal', 'Lalb_Chr25g0290061' => 'lal', 'Lalb_Chr25g0290071' => 'lal', 'Lj1g0003876' => 'lja', 'Lj1P1207T36' => 'lonja', 'Lj2C1156G12' => 'lonja', 'Lj3A793G39' => 'lonja', 'Lj3C580G2' => 'lonja', 'Lj3C780G2' => 'lonja', 'Lj3C780T4' => 'lonja', 'Lj3C793G9' => 'lonja', 'Lj4g0012960' => 'lja', 'Lj5g0021252' => 'lja', 'Lj5g0021484' => 'lja', 'Lj5g0024528' => 'lja', 'Lj6A399T12' => 'lonja', 'Lj6A656G65' => 'lonja', 'Lsat_1_v5_gn_3_125500' => 'lsa', 'Lsat_1_v5_gn_3_125540' => 'lsa', 'Lsat_1_v5_gn_5_72701' => 'lsa', 'Lsat_1_v5_gn_8_91560' => 'lsa', 'Lsat_1_v5_gn_9_9640' => 'lsa', 'Manes.01G200600' => 'mes', 'Manes.01G200700' => 'mes', 'Manes.03G168900' => 'mes', 'Manes.03G169000' => 'mes', 'Manes.05G085801' => 'mes', 'Manes.05G086200' => 'mes', 'Manes.15G036700' => 'mes', 'Manes.15G036900' => 'mes', 'Mapoly0004s0172' => 'mpo', 'Mapoly0023s0001' => 'mpo', 'Mapoly0142s0012' => 'mpo', 'MBI01_g32854_MAGBIO' => 'mbi', 'MBI11_g24427_MAGBIO' => 'mbi', 'MBI11_g47319_MAGBIO' => 'mbi', 'MCO01G433' => 'mco', 'MD00G1187800' => 'mdo', 'MD04G1226500' => 'mdo', 'MD05G1203900' => 'mdo', 'MD10G1191100' => 'mdo', 'MD12G1243500' => 'mdo', 'MD13G1207000' => 'mdo', 'MD13G1207100' => 'mdo', 'MD16G1208600' => 'mdo', 'Medtr1g050352' => 'mtr', 'Medtr1g070385' => 'mtr', 'Medtr1g070450' => 'mtr', 'Medtr1g075200' => 'mtr', 'Medtr1g075250' => 'mtr', 'Medtr1g075260' => 'mtr', 'Medtr1g475250' => 'mtr', 'Medtr4g075450' => 'mtr', 'Medtr7g096300' => 'mtr', 'Medtr8g105110' => 'mtr', 'MELO3C006470.2' => 'cme', 'MELO3C006471.2' => 'cme', 'MELO3C020772.2' => 'cme', 'MELO3C026780.2' => 'cme', 'MELO3C026781.2' => 'cme', 'Migut.D00390' => 'egut', 'Migut.G00435' => 'egut', 'Migut.G00436' => 'egut', 'Migut.G00718' => 'egut', 'MSTRG.21891' => 'ama', 'MSTRG.26910' => 'ama', 'MSTRG.4099' => 'ama', 'MSTRG.9925' => 'ama', 'Nitab4.5_0000165g0010' => 'nta', 'Nitab4.5_0000209g0180' => 'nta', 'Nitab4.5_0000244g0440' => 'nta', 'Nitab4.5_0000525g0220' => 'nta', 'Nitab4.5_0001597g0020' => 'nta', 'Nitab4.5_0001878g0040' => 'nta', 'Nitab4.5_0001878g0060' => 'nta', 'Nitab4.5_0002838g0100' => 'nta', 'Nitab4.5_0002838g0120' => 'nta', 'Nitab4.5_0004798g0030' => 'nta', 'Nitab4.5_0005420g0010' => 'nta', 'Nitab4.5_0005507g0010' => 'nta', 'Nitab4.5_0005574g0020' => 'nta', 'Nitab4.5_0005838g0010' => 'nta', 'Nitab4.5_0010580g0020' => 'nta', 'Nn1g02599' => 'nnu', 'Nn1g02608' => 'nnu', 'Nn3g17742' => 'nnu', 'Nn3g19534' => 'nnu', 'Nn3g19535' => 'nnu', 'Oeu008790.1' => 'oeu', 'Oeu008792.1' => 'oeu', 'Oeu032590.1' => 'oeu', 'Oeu035349.1' => 'oeu', 'Oeu049791.1' => 'oeu', 'Os01g0774500' => 'osa', 'Os03g0628800' => 'osa', 'Os03g0798600' => 'osa', 'Os05g0508800' => 'osa', 'Peaxi162Scf00036g02018' => 'pax', 'Peaxi162Scf00578g00032' => 'pax', 'Peaxi162Scf00578g00317' => 'pax', 'Peaxi162Scf00785g00114' => 'pax', 'Peaxi162Scf00813g00119' => 'pax', 'Peaxi162Scf00906g00227' => 'pax', 'PGR004G0875' => 'pgr', 'PGR004G2424' => 'pgr', 'PGR031G1239' => 'pgr', 'PGR031G2474' => 'pgr', 'PGR044G0423' => 'pgr', 'PGSC0003DMG400001128' => 'stu', 'PGSC0003DMG400007336' => 'stu', 'PGSC0003DMG400016318' => 'stu', 'PGSC0003DMG400016319' => 'stu', 'PGSC0003DMG400018074' => 'stu', 'Phvul.001G157700' => 'pvu', 'Phvul.002G148550' => 'pvu', 'Phvul.002G320200' => 'pvu', 'Phvul.003G089200' => 'pvu', 'Phvul.007G126000' => 'pvu', 'Phvul.007G126100' => 'pvu', 'Phvul.007G178000' => 'pvu', 'Phvul.007G178200' => 'pvu', 'Potri.002G043000' => 'ptr', 'Potri.002G043200' => 'ptr', 'Potri.003G123750' => 'ptr', 'Potri.005G055401' => 'ptr', 'Potri.005G219700' => 'ptr', 'Potri.005G220000' => 'ptr', 'Potri.008G161901' => 'ptr', 'Potri.008G162000' => 'ptr', 'Potri.008G162400' => 'ptr', 'Potri.010G076900' => 'ptr', 'Pp3c12_9180' => 'ppa', 'Pp3c13_19770' => 'ppa', 'Pp3c14_22950' => 'ppa', 'Pp3c16_12160' => 'ppa', 'Pp3c27_7820' => 'ppa', 'Pp3c2_3490' => 'ppa', 'Pp3c3_23700' => 'ppa', 'Pp3c3_36520' => 'ppa', 'Pp3c4_15250' => 'ppa', 'PRCOL_00007002' => 'pco', 'Prupe.1G030600' => 'ppe', 'Prupe.1G030700' => 'ppe', 'Prupe.6G345200' => 'ppe', 'Prupe.8G230300' => 'ppe', 'Prupe.8G230500' => 'ppe', 'Psat3g059600' => 'psa', 'Psat5g200920' => 'psa', 'Psat6g056440' => 'psa', 'Psat6g057360' => 'psa', 'Psat6g134120' => 'psa', 'Psat6g134160' => 'psa', 'Psat7g008640' => 'psa', 'Psat7g185240' => 'psa', 'PSO017G1330' => 'pso', 'PSO063G6097' => 'pso', 'PSO170G0835' => 'pso', 'PSO170G2499' => 'pso', 'PSO210G5058' => 'pso', 'PSO210G6154' => 'pso', 'PSO585G0031' => 'pso', 'PSO832G0264' => 'pso', 'PSO832G4288' => 'pso', 'QL03p027355' => 'qlo', 'QL03p027430' => 'qlo', 'QL04p081380' => 'qlo', 'QL06p015642' => 'qlo', 'QL06p015650' => 'qlo', 'QL06p015686' => 'qlo', 'QL12p042927' => 'qlo', 'QL93p1863_0035' => 'qlo', 'RcHm_v2.0_Chr3g0450581' => 'rch', 'RcHm_v2.0_Chr4g0390371' => 'rch', 'RcHm_v2.0_Chr4g0390381' => 'rch', 'RcHm_v2.0_Chr4g0390491' => 'rch', 'RcHm_v2.0_Chr4g0390501' => 'rch', 'RcHm_v2.0_Chr6g0289231' => 'rch', 'Rhsim04G0190400' => 'rsi', 'Rhsim04G0190500' => 'rsi', 'Rhsim04G0190600' => 'rsi', 'Rhsim13G0031400' => 'rsi', 'Rhsim13G0165600' => 'rsi', 'RhsimUnG0114600' => 'rsi', 'RhsimUnG0114700' => 'rsi', 'Sabra02G0034800' => 'sbr', 'Sabra02G0035100' => 'sbr', 'Sabra05G0168600' => 'sbr', 'Sabra05G0168800' => 'sbr', 'Sabra08G0123700' => 'sbr', 'Sabra10G0031900' => 'sbr', 'Sabra13G0039000' => 'sbr', 'SalBow2G0782' => 'sbo', 'SalBow2G1403' => 'sbo', 'SalBow4G0074' => 'sbo', 'SalBow4G2635' => 'sbo', 'SalBow5G3010' => 'sbo', 'Sc05g0000870' => 'sci', 'Sc05g0000890' => 'sci', 'Sc13g0005000' => 'sci', 'Sc13g0005030' => 'sci', 'Sc19g0003790' => 'sci', 'Sc19g0003800' => 'sci', 'Sed0003467' => 'sed', 'Sed0009355' => 'sed', 'Sed0009894' => 'sed', 'Sed0011972' => 'sed', 'Sed0021483' => 'sed', 'Sed0021750' => 'sed', 'Sed0026279' => 'sed', 'SEGI_05312' => 'sgi', 'SEGI_10112' => 'sgi', 'SEGI_15835' => 'sgi', 'SEGI_30386' => 'sgi', 'SEGI_34122' => 'sgi', 'SEGI_35063' => 'sgi', 'SGA_v2.0_scaffold101G29794' => 'sas', 'SGA_v2.0_scaffold1G00573' => 'sas', 'SGA_v2.0_scaffold79G25637' => 'sas', 'SGA_v2.0_scaffold88G27283' => 'sas', 'SGA_v2.0_scaffold88G27285' => 'sas', 'SGA_v2.0_scaffold88G27331' => 'sas', 'SHI09937' => 'shi', 'SMO119G0302' => 'smo', 'SMO137G0231' => 'smo', 'SMO367G1151' => 'smo', 'Solyc02g082000.3' => 'sly', 'Solyc06g031670.3' => 'sly', 'Solyc06g053810.3' => 'sly', 'Solyc07g025457.1' => 'sly', 'Solyc08g059740.1' => 'sly', 'Solyc08g059750.3' => 'sly', 'Solyc09g083370.3' => 'sly', 'Solyc12g038950.3' => 'sly', 'Sopen02g026630' => 'spe', 'Sopen06g018930' => 'spe', 'Sopen06g018940' => 'spe', 'Sopen08g009460' => 'spe', 'Sopen09g032290' => 'spe', 'Sp1g03080' => 'spa', 'Sp1g03090' => 'spa', 'Sp1g05480' => 'spa', 'Sp2g07860' => 'spa', 'Sp2g08430' => 'spa', 'Sp2g08440' => 'spa', 'Sp2g26200' => 'spa', 'Sp4g13170' => 'spa', 'Sp6g33840' => 'spa', 'SpUn1204_0010' => 'spa', 'TAR365G0908' => 'tar', 'TAR381G1270' => 'tar', 'TAR381G1651' => 'tar', 'TAR625G1131' => 'tar', 'TAR633G0962' => 'tar', 'TAR633G1729' => 'tar', 'TAR633G1864' => 'tar', 'TAR636G0221' => 'tar', 'TAR636G0314' => 'tar', 'TAR636G3202' => 'tar', 'THA.LOC104800805' => 'tha', 'THA.LOC104801096' => 'tha', 'THA.LOC104801555' => 'tha', 'THA.LOC104808491' => 'tha', 'THA.LOC104808595' => 'tha', 'THA.LOC104815985' => 'tha', 'THA.LOC104822250' => 'tha', 'THA.LOC104826071' => 'tha', 'Thecc.01G265200' => 'tca', 'Thecc.01G265300' => 'tca', 'Thecc.01G265700' => 'tca', 'Thecc.03G109100' => 'tca', 'Thecc.04G245900' => 'tca', 'Thecc.04G246000' => 'tca', 'Thhalv10003334m.g' => 'esa', 'Thhalv10005508m.g' => 'esa', 'Thhalv10005643m.g' => 'esa', 'Thhalv10007316m.g' => 'esa', 'Thhalv10009006m.g' => 'esa', 'Thhalv10009309m.g' => 'esa', 'Thhalv10014917m.g' => 'esa', 'Thhalv10014919m.g' => 'esa', 'Thhalv10015393m.g' => 'esa', 'Thhalv10016515m.g' => 'esa', 'Thhalv10029242m.g' => 'esa', 'TPR.G16654' => 'tpr', 'TPR.G20589' => 'tpr', 'TPR.G23029' => 'tpr', 'TPR.G27731' => 'tpr', 'TPR.G28889' => 'tpr', 'TPR.G28899' => 'tpr', 'TPR.G30846' => 'tpr', 'TPR.G5452' => 'tpr', 'TPR.G5713' => 'tpr', 'TPR.G9046' => 'tpr', 'TPR.G9061' => 'tpr', 'TWI09G1075' => 'twi', 'TWI12G0806' => 'twi', 'TWI18G0108' => 'twi', 'TWI53G1361' => 'twi', 'TWI73G0185' => 'twi', 'TWI73G0427' => 'twi', 'unitig_37.g12001' => 'ugi', 'unitig_747.g21660' => 'ugi', 'unitig_748.g7232' => 'ugi', 'unitig_748.g7315' => 'ugi', 'unitig_85.g27262' => 'ugi', 'unitig_92.g28220' => 'ugi', 'vmacro02632' => 'vma', 'vmacro08410' => 'vma', 'vmacro08411' => 'vma', 'vmacro15407' => 'vma', 'VMungo0251G3619' => 'vmu', 'VMungo0720G1204' => 'vmu', 'VMungo0720G1918' => 'vmu', 'VMungo0720G2387' => 'vmu', 'VMungo0720G2961' => 'vmu', 'VMungo1215G2154' => 'vmu', 'VMungo1383G2411' => 'vmu', 'Zm00001eb051130' => 'zma', 'Zm00001eb116830' => 'zma', 'Zm00001eb116850' => 'zma', 'Zm00001eb151740' => 'zma', 'Zm00001eb292360' => 'zma', 'Zm00001eb301640' => 'zma' ), 'gf_id' => 'HOM05D000856', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000856' ), 'data_identifier' => 'HOM05D000856', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000856', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p00010' => 'bna', 'A03p04160' => 'bna', 'A03p17160' => 'bna', 'A04p23370' => 'bna', 'A05p14860' => 'bna', 'A08p37020' => 'bna', 'A09p08050' => 'bna', 'A09p66800' => 'bna', 'A09p67940' => 'bna', 'A10p02680' => 'bna', 'A10p05320' => 'bna', 'Aa31LG1G20560' => 'aar', 'Aa31LG1G20610' => 'aar', 'Aa31LG1G7810' => 'aar', 'Aa31LG5G3590' => 'aar', 'Aa31LG5G6140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3819' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4683' => 'aag', 'Actinidia04480' => 'ach', 'Actinidia05466' => 'ach', 'Actinidia08445' => 'ach', 'Actinidia21170' => 'ach', 'Actinidia24812' => 'ach', 'Actinidia24951' => 'ach', 'Actinidia40088' => 'ach', 'Ah.02g111660' => 'amhyb', 'Ah.11g048900' => 'amhyb', 'Ah.11g049910' => 'amhyb', 'AL1G13870' => 'aly', 'AL1G13880' => 'aly', 'AL1G16760' => 'aly', 'AL390U10020' => 'aly', 'AL4G25520' => 'aly', 'AL6G19890' => 'aly', 'AL6G19900' => 'aly', 'AL6G19910' => 'aly', 'AL8G40100' => 'aly', 'Aqoxy2G03562' => 'aox', 'Aqoxy5G00316' => 'aox', 'Aqoxy5G00926' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1628KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1H403S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2FU6SJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.882I6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8YRY2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YN1SN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AF70II' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZA8L1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F916KL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHRD8H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KTZ8QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S22EMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8M29T' => 'arhy', 'AT1G04270' => 'ath', 'AT1G04280' => 'ath', 'AT1G06750' => 'ath', 'AT1G33850' => 'ath', 'AT2G30630' => 'ath', 'AT5G09490' => 'ath', 'AT5G09500' => 'ath', 'AT5G09510' => 'ath', 'AT5G43640' => 'ath', 'AT5G63070' => 'ath', 'ATR0605G315' => 'atr', 'Atru.chr11.175' => 'acertr', 'Atru.chr11.653' => 'acertr', 'Atru.chr3.1616' => 'acertr', 'Atru.chr4.2230' => 'acertr', 'Atru.chr4.2232' => 'acertr', 'Atru.chr5.1598' => 'acertr', 'Atru.chr5.1600' => 'acertr', 'Atru.chr5.2188' => 'acertr', 'AUR62008326' => 'cqu', 'AUR62011922' => 'cqu', 'AUR62011924' => 'cqu', 'AUR62021771' => 'cqu', 'AUR62032237' => 'cqu', 'AUR62032240' => 'cqu', 'BcaB01g05572' => 'bca', 'BcaB02g10337' => 'bca', 'BcaB04g19944' => 'bca', 'BcaB05g21548' => 'bca', 'BcaB05g21549' => 'bca', 'BcaB05g23227' => 'bca', 'BcaB06g26256' => 'bca', 'BcaB06g26257' => 'bca', 'BcaB06g28379' => 'bca', 'BcaC02g11159' => 'bca', 'BcaC03g13258' => 'bca', 'BcaC03g13259' => 'bca', 'BcaC05g24456' => 'bca', 'BcaC05g24457' => 'bca', 'BcaC07g36922' => 'bca', 'BcaC07g36923' => 'bca', 'BcaC07g42050' => 'bca', 'BcaC07g42176' => 'bca', 'BcaC07g42195' => 'bca', 'BcaC07g42196' => 'bca', 'BcaNung06674' => 'bca', 'BolC2t06351H' => 'bol', 'BolC2t06352H' => 'bol', 'BolC3t12993H' => 'bol', 'BolC4t23525H' => 'bol', 'BolC4t27475H' => 'bol', 'BolC5t29025H' => 'bol', 'BolC5t29026H' => 'bol', 'BolC8t46898H' => 'bol', 'BolC8t46899H' => 'bol', 'BolC8t52630H' => 'bol', 'BolC8t52765H' => 'bol', 'BolC9t53824H' => 'bol', 'BraA03t09760Z' => 'bra', 'BraA03t10990Z' => 'bra', 'BraA05t20413Z' => 'bra', 'BraA08t35602Z' => 'bra', 'BraA09t36458Z' => 'bra', 'BraA09t42018Z' => 'bra', 'BraA09t42129Z' => 'bra', 'BraA10t42536Z' => 'bra', 'BraA10t42537Z' => 'bra', 'C01p10690' => 'bna', 'C02p03890' => 'bna', 'C02p03900' => 'bna', 'C03p04620' => 'bna', 'C04p19870' => 'bna', 'C04p59670' => 'bna', 'C05p02460' => 'bna', 'C05p02470' => 'bna', 'C08p00980' => 'bna', 'C08p00990' => 'bna', 'C08p51030' => 'bna', 'C08p52360' => 'bna', 'C09p09120' => 'bna', 'CAN.G19.15' => 'can', 'CAN.G251.10' => 'can', 'CAN.G251.9' => 'can', 'CAN.G398.24' => 'can', 'CAN.G410.32' => 'can', 'CAN.G881.2' => 'can', 'CANSAT01G3025' => 'cansat', 'CANSAT78G1211' => 'cansat', 'CANSAT78G1218' => 'cansat', 'CANSAT78G1521' => 'cansat', 'CANSAT78G1670' => 'cansat', 'CARHR003600' => 'chi', 'CARHR003610' => 'chi', 'CARHR006290' => 'chi', 'CARHR006430' => 'chi', 'CARHR124110' => 'chi', 'CARHR203870' => 'chi', 'CARHR203880' => 'chi', 'CARHR203890' => 'chi', 'CARHR276880' => 'chi', 'Carub.0001s0346' => 'cru', 'Carub.0001s0347' => 'cru', 'Carub.0001s0607' => 'cru', 'Carub.0003s2768' => 'cru', 'Carub.0003s2769' => 'cru', 'Carub.0004s1178' => 'cru', 'Carub.0006s0806' => 'cru', 'Carub.0006s0807' => 'cru', 'Carub.0006s0808' => 'cru', 'Carub.0008s0501' => 'cru', 'Carub.0008s2379' => 'cru', 'Ca_08655_v3' => 'car', 'Ca_08922_v3' => 'car', 'Ca_08923_v3' => 'car', 'Ca_09119_v3' => 'car', 'Ca_09703_v3' => 'car', 'Ca_09705_v3' => 'car', 'Ca_09835_v3' => 'car', 'Ca_26403_v3' => 'car', 'Ca_30719_v3' => 'car', 'CBR_g17958' => 'cbr', 'CBR_g40516' => 'cbr', 'Cc00_g05350' => 'ccan', 'Cc01_g18690' => 'ccan', 'Cc03_g04830' => 'ccan', 'Cc03_g04850' => 'ccan', 'CDE02G4469' => 'cde', 'CDE06G0883' => 'cde', 'CDE06G1295' => 'cde', 'CDE06G1390' => 'cde', 'CDE07G0584' => 'cde', 'CDE07G1084' => 'cde', 'CDE08G1259' => 'cde', 'Cfa002341' => 'cfa', 'Cfa024337' => 'cfa', 'Ciclev10004749m.g' => 'ccl', 'Ciclev10006127m.g' => 'ccl', 'Ciclev10019720m.g' => 'ccl', 'Ciclev10022652m.g' => 'ccl', 'CiPaw.01G190400' => 'cil', 'CiPaw.01G190500' => 'cil', 'CiPaw.02G116400' => 'cil', 'CiPaw.02G116500' => 'cil', 'CiPaw.04G183000' => 'cil', 'CiPaw.04G183300' => 'cil', 'ClCG05G004610' => 'cla', 'ClCG05G004620' => 'cla', 'ClCG06G006730' => 'cla', 'ClCG06G006740' => 'cla', 'ClCG11G003690' => 'cla', 'COL.COLO4_08276' => 'col', 'COL.COLO4_08277' => 'col', 'COL.COLO4_15787' => 'col', 'COL.COLO4_15789' => 'col', 'Cpa.g.c44815' => 'cpa', 'Cpa.g.sc52.144' => 'cpa', 'Cpa.g.sc58.46' => 'cpa', 'Cpa.g.sc58.47' => 'cpa', 'Cre08.g360900' => 'cre', 'CsaV3_2G013030' => 'csa', 'CsaV3_2G013050' => 'csa', 'CsaV3_2G015620' => 'csa', 'CsaV3_3G012590' => 'csa', 'CsaV3_3G012600' => 'csa', 'CSS0001641' => 'camsi', 'CSS0008310' => 'camsi', 'CSS0013011' => 'camsi', 'CSS0017147' => 'camsi', 'CSS0022970' => 'camsi', 'CSS0025655' => 'camsi', 'CSS0028665' => 'camsi', 'CSS0029117' => 'camsi', 'CSS0032024' => 'camsi', 'CSS0039681' => 'camsi', 'CSS0046516' => 'camsi', 'CSS0050307' => 'camsi', 'DCAR_005871' => 'dca', 'DCAR_007342' => 'dca', 'DCAR_024228' => 'dca', 'DCAR_027277' => 'dca', 'DCAR_030718' => 'dca', 'Dinv20287' => 'din', 'Dinv22461' => 'din', 'Dinv22464' => 'din', 'Dinv29912' => 'din', 'Dinv29913' => 'din', 'Dinv34580' => 'din', 'Dinv34582' => 'din', 'Dinv44632' => 'din', 'Duzib052G0266' => 'dzi', 'Duzib133G0907' => 'dzi', 'Duzib133G1034' => 'dzi', 'Duzib138G0207' => 'dzi', 'Duzib138G0491' => 'dzi', 'Duzib151G0812' => 'dzi', 'Duzib151G1166' => 'dzi', 'Duzib168G0192' => 'dzi', 'Duzib211G0077' => 'dzi', 'Duzib212G0429' => 'dzi', 'Duzib212G0472' => 'dzi', 'ECA233G2617' => 'eca', 'ECA236G4188' => 'eca', 'ECA240G0936' => 'eca', 'ECA240G1129' => 'eca', 'ECA247G0623' => 'eca', 'EL10Ac5g10451' => 'bvu', 'EL10Ac5g10453' => 'bvu', 'EL10Ac5g10894' => 'bvu', 'Eucgr.H00192' => 'egr', 'Eucgr.H00193' => 'egr', 'Eucgr.H00194' => 'egr', 'Eucgr.J01562' => 'egr', 'Eucgr.K03301' => 'egr', 'FAN02G0632' => 'fan', 'FAN05G5378' => 'fan', 'FAN09G3247' => 'fan', 'FAN12G0435' => 'fan', 'FAN12G2426' => 'fan', 'FAN14G1707' => 'fan', 'FAN14G4725' => 'fan', 'FAN15G2071' => 'fan', 'FAN17G3065' => 'fan', 'FAN19G1376' => 'fan', 'FAN20G0354' => 'fan', 'FAN20G2429' => 'fan', 'FAN20G2658' => 'fan', 'FAN24G2343' => 'fan', 'FAN27G2362' => 'fan', 'FAN28G1765' => 'fan', 'FvH4_1g16020' => 'fve', 'FvH4_2g04890' => 'fve', 'FvH4_2g22270' => 'fve', 'FvH4_4g02630' => 'fve', 'FvH4_4g02640' => 'fve', 'FvH4_6g02650' => 'fve', 'Glyma.02G140600' => 'gma', 'Glyma.03G159900' => 'gma', 'Glyma.05G234800' => 'gma', 'Glyma.07G269600' => 'gma', 'Glyma.08G042300' => 'gma', 'Glyma.10G033500' => 'gma', 'Glyma.10G185200' => 'gma', 'Glyma.17G004300' => 'gma', 'Glyma.19G161900' => 'gma', 'Glyma.20G205100' => 'gma', 'Glyma.20G205200' => 'gma', 'Gohir.A01G139101' => 'ghi', 'Gohir.A02G035600' => 'ghi', 'Gohir.A02G117901' => 'ghi', 'Gohir.A07G210100' => 'ghi', 'Gohir.A07G210200' => 'ghi', 'Gohir.A08G061100' => 'ghi', 'Gohir.A09G223000' => 'ghi', 'Gohir.A09G223100' => 'ghi', 'Gohir.A10G113900' => 'ghi', 'Gohir.A10G114000' => 'ghi', 'Gohir.D02G042300' => 'ghi', 'Gohir.D07G216100' => 'ghi', 'Gohir.D07G216200' => 'ghi', 'Gohir.D08G070400' => 'ghi', 'Gohir.D09G225000' => 'ghi', 'Gohir.D09G225100' => 'ghi', 'Gohir.D10G152300' => 'ghi', 'Gohir.D10G153200' => 'ghi', 'Gohir.D11G133701' => 'ghi', 'Gorai.004G074100' => 'gra', 'Gorai.005G046800' => 'gra', 'Gorai.006G246500' => 'gra', 'Gorai.006G246600' => 'gra', 'Gorai.007G142900' => 'gra', 'Gorai.011G171000' => 'gra', 'Gorai.011G171100' => 'gra', 'Gorai.013G104300' => 'gra', 'Gorai.013G104400' => 'gra', 'GSVIVG01000754001' => 'vvi', 'GSVIVG01000756001' => 'vvi', 'GSVIVG01010903001' => 'vvi', 'GSVIVG01017623001' => 'vvi', 'GSVIVG01018113001' => 'vvi', 'GSVIVG01018116001' => 'vvi', 'GSVIVG01018118001' => 'vvi', 'HanXRQChr03g0076211' => 'han', 'HanXRQChr03g0092431' => 'han', 'HanXRQChr03g0092441' => 'han', 'HanXRQChr03g0092591' => 'han', 'HanXRQChr03g0092671' => 'han', 'HanXRQChr03g0092681' => 'han', 'HanXRQChr03g0092691' => 'han', 'HanXRQChr03g0092701' => 'han', 'HanXRQChr03g0092721' => 'han', 'HanXRQChr03g0092731' => 'han', 'HanXRQChr04g0113681' => 'han', 'HanXRQChr10g0281371' => 'han', 'HanXRQChr11g0337141' => 'han', 'HanXRQChr13g0424521' => 'han', 'HanXRQChr13g0424531' => 'han', 'HanXRQChr13g0424541' => 'han', 'HanXRQChr16g0498221' => 'han', 'Haze_04377' => 'cav', 'Haze_11298' => 'cav', 'Haze_24547' => 'cav', 'Haze_24550' => 'cav', 'Haze_26587' => 'cav', 'Hma1.2p1_0650F.1_g195410' => 'hma', 'Hma1.2p1_0893F.1_g233470' => 'hma', 'HPP92_006508' => 'vpl', 'HPP92_024780' => 'vpl', 'Hund02688' => 'sun', 'Hund09380' => 'sun', 'Hund09381' => 'sun', 'Hund09832' => 'sun', 'Hund09833' => 'sun', 'Hund11351' => 'sun', 'Hund11513' => 'sun', 'Lalb_Chr06g0162591' => 'lal', 'Lalb_Chr06g0162601' => 'lal', 'Lalb_Chr06g0169321' => 'lal', 'Lalb_Chr09g0330951' => 'lal', 'Lalb_Chr16g0387631' => 'lal', 'Lalb_Chr21g0306241' => 'lal', 'Lalb_Chr25g0290051' => 'lal', 'Lalb_Chr25g0290061' => 'lal', 'Lalb_Chr25g0290071' => 'lal', 'Lj1g0003876' => 'lja', 'Lj1P1207T36' => 'lonja', 'Lj2C1156G12' => 'lonja', 'Lj3A793G39' => 'lonja', 'Lj3C580G2' => 'lonja', 'Lj3C780G2' => 'lonja', 'Lj3C780T4' => 'lonja', 'Lj3C793G9' => 'lonja', 'Lj4g0012960' => 'lja', 'Lj5g0021252' => 'lja', 'Lj5g0021484' => 'lja', 'Lj5g0024528' => 'lja', 'Lj6A399T12' => 'lonja', 'Lj6A656G65' => 'lonja', 'Lsat_1_v5_gn_3_125500' => 'lsa', 'Lsat_1_v5_gn_3_125540' => 'lsa', 'Lsat_1_v5_gn_5_72701' => 'lsa', 'Lsat_1_v5_gn_8_91560' => 'lsa', 'Lsat_1_v5_gn_9_9640' => 'lsa', 'Manes.01G200600' => 'mes', 'Manes.01G200700' => 'mes', 'Manes.03G168900' => 'mes', 'Manes.03G169000' => 'mes', 'Manes.05G085801' => 'mes', 'Manes.05G086200' => 'mes', 'Manes.15G036700' => 'mes', 'Manes.15G036900' => 'mes', 'Mapoly0004s0172' => 'mpo', 'Mapoly0023s0001' => 'mpo', 'Mapoly0142s0012' => 'mpo', 'MBI01_g32854_MAGBIO' => 'mbi', 'MBI11_g24427_MAGBIO' => 'mbi', 'MBI11_g47319_MAGBIO' => 'mbi', 'MCO01G433' => 'mco', 'MD00G1187800' => 'mdo', 'MD04G1226500' => 'mdo', 'MD05G1203900' => 'mdo', 'MD10G1191100' => 'mdo', 'MD12G1243500' => 'mdo', 'MD13G1207000' => 'mdo', 'MD13G1207100' => 'mdo', 'MD16G1208600' => 'mdo', 'Medtr1g050352' => 'mtr', 'Medtr1g070385' => 'mtr', 'Medtr1g070450' => 'mtr', 'Medtr1g075200' => 'mtr', 'Medtr1g075250' => 'mtr', 'Medtr1g075260' => 'mtr', 'Medtr1g475250' => 'mtr', 'Medtr4g075450' => 'mtr', 'Medtr7g096300' => 'mtr', 'Medtr8g105110' => 'mtr', 'MELO3C006470.2' => 'cme', 'MELO3C006471.2' => 'cme', 'MELO3C020772.2' => 'cme', 'MELO3C026780.2' => 'cme', 'MELO3C026781.2' => 'cme', 'Migut.D00390' => 'egut', 'Migut.G00435' => 'egut', 'Migut.G00436' => 'egut', 'Migut.G00718' => 'egut', 'MSTRG.21891' => 'ama', 'MSTRG.26910' => 'ama', 'MSTRG.4099' => 'ama', 'MSTRG.9925' => 'ama', 'Nitab4.5_0000165g0010' => 'nta', 'Nitab4.5_0000209g0180' => 'nta', 'Nitab4.5_0000244g0440' => 'nta', 'Nitab4.5_0000525g0220' => 'nta', 'Nitab4.5_0001597g0020' => 'nta', 'Nitab4.5_0001878g0040' => 'nta', 'Nitab4.5_0001878g0060' => 'nta', 'Nitab4.5_0002838g0100' => 'nta', 'Nitab4.5_0002838g0120' => 'nta', 'Nitab4.5_0004798g0030' => 'nta', 'Nitab4.5_0005420g0010' => 'nta', 'Nitab4.5_0005507g0010' => 'nta', 'Nitab4.5_0005574g0020' => 'nta', 'Nitab4.5_0005838g0010' => 'nta', 'Nitab4.5_0010580g0020' => 'nta', 'Nn1g02599' => 'nnu', 'Nn1g02608' => 'nnu', 'Nn3g17742' => 'nnu', 'Nn3g19534' => 'nnu', 'Nn3g19535' => 'nnu', 'Oeu008790.1' => 'oeu', 'Oeu008792.1' => 'oeu', 'Oeu032590.1' => 'oeu', 'Oeu035349.1' => 'oeu', 'Oeu049791.1' => 'oeu', 'Os01g0774500' => 'osa', 'Os03g0628800' => 'osa', 'Os03g0798600' => 'osa', 'Os05g0508800' => 'osa', 'Peaxi162Scf00036g02018' => 'pax', 'Peaxi162Scf00578g00032' => 'pax', 'Peaxi162Scf00578g00317' => 'pax', 'Peaxi162Scf00785g00114' => 'pax', 'Peaxi162Scf00813g00119' => 'pax', 'Peaxi162Scf00906g00227' => 'pax', 'PGR004G0875' => 'pgr', 'PGR004G2424' => 'pgr', 'PGR031G1239' => 'pgr', 'PGR031G2474' => 'pgr', 'PGR044G0423' => 'pgr', 'PGSC0003DMG400001128' => 'stu', 'PGSC0003DMG400007336' => 'stu', 'PGSC0003DMG400016318' => 'stu', 'PGSC0003DMG400016319' => 'stu', 'PGSC0003DMG400018074' => 'stu', 'Phvul.001G157700' => 'pvu', 'Phvul.002G148550' => 'pvu', 'Phvul.002G320200' => 'pvu', 'Phvul.003G089200' => 'pvu', 'Phvul.007G126000' => 'pvu', 'Phvul.007G126100' => 'pvu', 'Phvul.007G178000' => 'pvu', 'Phvul.007G178200' => 'pvu', 'Potri.002G043000' => 'ptr', 'Potri.002G043200' => 'ptr', 'Potri.003G123750' => 'ptr', 'Potri.005G055401' => 'ptr', 'Potri.005G219700' => 'ptr', 'Potri.005G220000' => 'ptr', 'Potri.008G161901' => 'ptr', 'Potri.008G162000' => 'ptr', 'Potri.008G162400' => 'ptr', 'Potri.010G076900' => 'ptr', 'Pp3c12_9180' => 'ppa', 'Pp3c13_19770' => 'ppa', 'Pp3c14_22950' => 'ppa', 'Pp3c16_12160' => 'ppa', 'Pp3c27_7820' => 'ppa', 'Pp3c2_3490' => 'ppa', 'Pp3c3_23700' => 'ppa', 'Pp3c3_36520' => 'ppa', 'Pp3c4_15250' => 'ppa', 'PRCOL_00007002' => 'pco', 'Prupe.1G030600' => 'ppe', 'Prupe.1G030700' => 'ppe', 'Prupe.6G345200' => 'ppe', 'Prupe.8G230300' => 'ppe', 'Prupe.8G230500' => 'ppe', 'Psat3g059600' => 'psa', 'Psat5g200920' => 'psa', 'Psat6g056440' => 'psa', 'Psat6g057360' => 'psa', 'Psat6g134120' => 'psa', 'Psat6g134160' => 'psa', 'Psat7g008640' => 'psa', 'Psat7g185240' => 'psa', 'PSO017G1330' => 'pso', 'PSO063G6097' => 'pso', 'PSO170G0835' => 'pso', 'PSO170G2499' => 'pso', 'PSO210G5058' => 'pso', 'PSO210G6154' => 'pso', 'PSO585G0031' => 'pso', 'PSO832G0264' => 'pso', 'PSO832G4288' => 'pso', 'QL03p027355' => 'qlo', 'QL03p027430' => 'qlo', 'QL04p081380' => 'qlo', 'QL06p015642' => 'qlo', 'QL06p015650' => 'qlo', 'QL06p015686' => 'qlo', 'QL12p042927' => 'qlo', 'QL93p1863_0035' => 'qlo', 'RcHm_v2.0_Chr3g0450581' => 'rch', 'RcHm_v2.0_Chr4g0390371' => 'rch', 'RcHm_v2.0_Chr4g0390381' => 'rch', 'RcHm_v2.0_Chr4g0390491' => 'rch', 'RcHm_v2.0_Chr4g0390501' => 'rch', 'RcHm_v2.0_Chr6g0289231' => 'rch', 'Rhsim04G0190400' => 'rsi', 'Rhsim04G0190500' => 'rsi', 'Rhsim04G0190600' => 'rsi', 'Rhsim13G0031400' => 'rsi', 'Rhsim13G0165600' => 'rsi', 'RhsimUnG0114600' => 'rsi', 'RhsimUnG0114700' => 'rsi', 'Sabra02G0034800' => 'sbr', 'Sabra02G0035100' => 'sbr', 'Sabra05G0168600' => 'sbr', 'Sabra05G0168800' => 'sbr', 'Sabra08G0123700' => 'sbr', 'Sabra10G0031900' => 'sbr', 'Sabra13G0039000' => 'sbr', 'SalBow2G0782' => 'sbo', 'SalBow2G1403' => 'sbo', 'SalBow4G0074' => 'sbo', 'SalBow4G2635' => 'sbo', 'SalBow5G3010' => 'sbo', 'Sc05g0000870' => 'sci', 'Sc05g0000890' => 'sci', 'Sc13g0005000' => 'sci', 'Sc13g0005030' => 'sci', 'Sc19g0003790' => 'sci', 'Sc19g0003800' => 'sci', 'Sed0003467' => 'sed', 'Sed0009355' => 'sed', 'Sed0009894' => 'sed', 'Sed0011972' => 'sed', 'Sed0021483' => 'sed', 'Sed0021750' => 'sed', 'Sed0026279' => 'sed', 'SEGI_05312' => 'sgi', 'SEGI_10112' => 'sgi', 'SEGI_15835' => 'sgi', 'SEGI_30386' => 'sgi', 'SEGI_34122' => 'sgi', 'SEGI_35063' => 'sgi', 'SGA_v2.0_scaffold101G29794' => 'sas', 'SGA_v2.0_scaffold1G00573' => 'sas', 'SGA_v2.0_scaffold79G25637' => 'sas', 'SGA_v2.0_scaffold88G27283' => 'sas', 'SGA_v2.0_scaffold88G27285' => 'sas', 'SGA_v2.0_scaffold88G27331' => 'sas', 'SHI09937' => 'shi', 'SMO119G0302' => 'smo', 'SMO137G0231' => 'smo', 'SMO367G1151' => 'smo', 'Solyc02g082000.3' => 'sly', 'Solyc06g031670.3' => 'sly', 'Solyc06g053810.3' => 'sly', 'Solyc07g025457.1' => 'sly', 'Solyc08g059740.1' => 'sly', 'Solyc08g059750.3' => 'sly', 'Solyc09g083370.3' => 'sly', 'Solyc12g038950.3' => 'sly', 'Sopen02g026630' => 'spe', 'Sopen06g018930' => 'spe', 'Sopen06g018940' => 'spe', 'Sopen08g009460' => 'spe', 'Sopen09g032290' => 'spe', 'Sp1g03080' => 'spa', 'Sp1g03090' => 'spa', 'Sp1g05480' => 'spa', 'Sp2g07860' => 'spa', 'Sp2g08430' => 'spa', 'Sp2g08440' => 'spa', 'Sp2g26200' => 'spa', 'Sp4g13170' => 'spa', 'Sp6g33840' => 'spa', 'SpUn1204_0010' => 'spa', 'TAR365G0908' => 'tar', 'TAR381G1270' => 'tar', 'TAR381G1651' => 'tar', 'TAR625G1131' => 'tar', 'TAR633G0962' => 'tar', 'TAR633G1729' => 'tar', 'TAR633G1864' => 'tar', 'TAR636G0221' => 'tar', 'TAR636G0314' => 'tar', 'TAR636G3202' => 'tar', 'THA.LOC104800805' => 'tha', 'THA.LOC104801096' => 'tha', 'THA.LOC104801555' => 'tha', 'THA.LOC104808491' => 'tha', 'THA.LOC104808595' => 'tha', 'THA.LOC104815985' => 'tha', 'THA.LOC104822250' => 'tha', 'THA.LOC104826071' => 'tha', 'Thecc.01G265200' => 'tca', 'Thecc.01G265300' => 'tca', 'Thecc.01G265700' => 'tca', 'Thecc.03G109100' => 'tca', 'Thecc.04G245900' => 'tca', 'Thecc.04G246000' => 'tca', 'Thhalv10003334m.g' => 'esa', 'Thhalv10005508m.g' => 'esa', 'Thhalv10005643m.g' => 'esa', 'Thhalv10007316m.g' => 'esa', 'Thhalv10009006m.g' => 'esa', 'Thhalv10009309m.g' => 'esa', 'Thhalv10014917m.g' => 'esa', 'Thhalv10014919m.g' => 'esa', 'Thhalv10015393m.g' => 'esa', 'Thhalv10016515m.g' => 'esa', 'Thhalv10029242m.g' => 'esa', 'TPR.G16654' => 'tpr', 'TPR.G20589' => 'tpr', 'TPR.G23029' => 'tpr', 'TPR.G27731' => 'tpr', 'TPR.G28889' => 'tpr', 'TPR.G28899' => 'tpr', 'TPR.G30846' => 'tpr', 'TPR.G5452' => 'tpr', 'TPR.G5713' => 'tpr', 'TPR.G9046' => 'tpr', 'TPR.G9061' => 'tpr', 'TWI09G1075' => 'twi', 'TWI12G0806' => 'twi', 'TWI18G0108' => 'twi', 'TWI53G1361' => 'twi', 'TWI73G0185' => 'twi', 'TWI73G0427' => 'twi', 'unitig_37.g12001' => 'ugi', 'unitig_747.g21660' => 'ugi', 'unitig_748.g7232' => 'ugi', 'unitig_748.g7315' => 'ugi', 'unitig_85.g27262' => 'ugi', 'unitig_92.g28220' => 'ugi', 'vmacro02632' => 'vma', 'vmacro08410' => 'vma', 'vmacro08411' => 'vma', 'vmacro15407' => 'vma', 'VMungo0251G3619' => 'vmu', 'VMungo0720G1204' => 'vmu', 'VMungo0720G1918' => 'vmu', 'VMungo0720G2387' => 'vmu', 'VMungo0720G2961' => 'vmu', 'VMungo1215G2154' => 'vmu', 'VMungo1383G2411' => 'vmu', 'Zm00001eb051130' => 'zma', 'Zm00001eb116830' => 'zma', 'Zm00001eb116850' => 'zma', 'Zm00001eb151740' => 'zma', 'Zm00001eb292360' => 'zma', 'Zm00001eb301640' => 'zma' ) $gf_id = 'HOM05D000856' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000856' ) $data_identifier = 'HOM05D000856' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 13, 'ath' => (int) 10, 'atr' => (int) 1, 'acertr' => (int) 8, 'cqu' => (int) 6, 'bca' => (int) 21, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 11, 'car' => (int) 9, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 8, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 5, 'fan' => (int) 16, 'fve' => (int) 6, 'gma' => (int) 11, 'ghi' => (int) 19, 'gra' => (int) 9, 'vvi' => (int) 7, 'han' => (int) 17, 'cav' => (int) 5, 'hma' => (int) 2, 'vpl' => (int) 2, 'sun' => (int) 7, 'lal' => (int) 9, 'lja' => (int) 5, 'lonja' => (int) 9, 'lsa' => (int) 5, 'mes' => (int) 8, 'mpo' => (int) 3, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 10, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 15, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 9, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 9, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 6, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 5, 'spa' => (int) 10, 'tar' => (int) 10, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 11, 'tpr' => (int) 11, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 4, 'vmu' => (int) 7, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb301640' $species_info = array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ) $local_species = 'cru' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000856', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p00010' => 'bna', 'A03p04160' => 'bna', 'A03p17160' => 'bna', 'A04p23370' => 'bna', 'A05p14860' => 'bna', 'A08p37020' => 'bna', 'A09p08050' => 'bna', 'A09p66800' => 'bna', 'A09p67940' => 'bna', 'A10p02680' => 'bna', 'A10p05320' => 'bna', 'Aa31LG1G20560' => 'aar', 'Aa31LG1G20610' => 'aar', 'Aa31LG1G7810' => 'aar', 'Aa31LG5G3590' => 'aar', 'Aa31LG5G6140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3819' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4683' => 'aag', 'Actinidia04480' => 'ach', 'Actinidia05466' => 'ach', 'Actinidia08445' => 'ach', 'Actinidia21170' => 'ach', 'Actinidia24812' => 'ach', 'Actinidia24951' => 'ach', 'Actinidia40088' => 'ach', 'Ah.02g111660' => 'amhyb', 'Ah.11g048900' => 'amhyb', 'Ah.11g049910' => 'amhyb', 'AL1G13870' => 'aly', 'AL1G13880' => 'aly', 'AL1G16760' => 'aly', 'AL390U10020' => 'aly', 'AL4G25520' => 'aly', 'AL6G19890' => 'aly', 'AL6G19900' => 'aly', 'AL6G19910' => 'aly', 'AL8G40100' => 'aly', 'Aqoxy2G03562' => 'aox', 'Aqoxy5G00316' => 'aox', 'Aqoxy5G00926' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1628KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1H403S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2FU6SJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.882I6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8YRY2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YN1SN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AF70II' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZA8L1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F916KL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHRD8H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KTZ8QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S22EMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8M29T' => 'arhy', 'AT1G04270' => 'ath', 'AT1G04280' => 'ath', 'AT1G06750' => 'ath', 'AT1G33850' => 'ath', 'AT2G30630' => 'ath', 'AT5G09490' => 'ath', 'AT5G09500' => 'ath', 'AT5G09510' => 'ath', 'AT5G43640' => 'ath', 'AT5G63070' => 'ath', 'ATR0605G315' => 'atr', 'Atru.chr11.175' => 'acertr', 'Atru.chr11.653' => 'acertr', 'Atru.chr3.1616' => 'acertr', 'Atru.chr4.2230' => 'acertr', 'Atru.chr4.2232' => 'acertr', 'Atru.chr5.1598' => 'acertr', 'Atru.chr5.1600' => 'acertr', 'Atru.chr5.2188' => 'acertr', 'AUR62008326' => 'cqu', 'AUR62011922' => 'cqu', 'AUR62011924' => 'cqu', 'AUR62021771' => 'cqu', 'AUR62032237' => 'cqu', 'AUR62032240' => 'cqu', 'BcaB01g05572' => 'bca', 'BcaB02g10337' => 'bca', 'BcaB04g19944' => 'bca', 'BcaB05g21548' => 'bca', 'BcaB05g21549' => 'bca', 'BcaB05g23227' => 'bca', 'BcaB06g26256' => 'bca', 'BcaB06g26257' => 'bca', 'BcaB06g28379' => 'bca', 'BcaC02g11159' => 'bca', 'BcaC03g13258' => 'bca', 'BcaC03g13259' => 'bca', 'BcaC05g24456' => 'bca', 'BcaC05g24457' => 'bca', 'BcaC07g36922' => 'bca', 'BcaC07g36923' => 'bca', 'BcaC07g42050' => 'bca', 'BcaC07g42176' => 'bca', 'BcaC07g42195' => 'bca', 'BcaC07g42196' => 'bca', 'BcaNung06674' => 'bca', 'BolC2t06351H' => 'bol', 'BolC2t06352H' => 'bol', 'BolC3t12993H' => 'bol', 'BolC4t23525H' => 'bol', 'BolC4t27475H' => 'bol', 'BolC5t29025H' => 'bol', 'BolC5t29026H' => 'bol', 'BolC8t46898H' => 'bol', 'BolC8t46899H' => 'bol', 'BolC8t52630H' => 'bol', 'BolC8t52765H' => 'bol', 'BolC9t53824H' => 'bol', 'BraA03t09760Z' => 'bra', 'BraA03t10990Z' => 'bra', 'BraA05t20413Z' => 'bra', 'BraA08t35602Z' => 'bra', 'BraA09t36458Z' => 'bra', 'BraA09t42018Z' => 'bra', 'BraA09t42129Z' => 'bra', 'BraA10t42536Z' => 'bra', 'BraA10t42537Z' => 'bra', 'C01p10690' => 'bna', 'C02p03890' => 'bna', 'C02p03900' => 'bna', 'C03p04620' => 'bna', 'C04p19870' => 'bna', 'C04p59670' => 'bna', 'C05p02460' => 'bna', 'C05p02470' => 'bna', 'C08p00980' => 'bna', 'C08p00990' => 'bna', 'C08p51030' => 'bna', 'C08p52360' => 'bna', 'C09p09120' => 'bna', 'CAN.G19.15' => 'can', 'CAN.G251.10' => 'can', 'CAN.G251.9' => 'can', 'CAN.G398.24' => 'can', 'CAN.G410.32' => 'can', 'CAN.G881.2' => 'can', 'CANSAT01G3025' => 'cansat', 'CANSAT78G1211' => 'cansat', 'CANSAT78G1218' => 'cansat', 'CANSAT78G1521' => 'cansat', 'CANSAT78G1670' => 'cansat', 'CARHR003600' => 'chi', 'CARHR003610' => 'chi', 'CARHR006290' => 'chi', 'CARHR006430' => 'chi', 'CARHR124110' => 'chi', 'CARHR203870' => 'chi', 'CARHR203880' => 'chi', 'CARHR203890' => 'chi', 'CARHR276880' => 'chi', 'Carub.0001s0346' => 'cru', 'Carub.0001s0347' => 'cru', 'Carub.0001s0607' => 'cru', 'Carub.0003s2768' => 'cru', 'Carub.0003s2769' => 'cru', 'Carub.0004s1178' => 'cru', 'Carub.0006s0806' => 'cru', 'Carub.0006s0807' => 'cru', 'Carub.0006s0808' => 'cru', 'Carub.0008s0501' => 'cru', 'Carub.0008s2379' => 'cru', 'Ca_08655_v3' => 'car', 'Ca_08922_v3' => 'car', 'Ca_08923_v3' => 'car', 'Ca_09119_v3' => 'car', 'Ca_09703_v3' => 'car', 'Ca_09705_v3' => 'car', 'Ca_09835_v3' => 'car', 'Ca_26403_v3' => 'car', 'Ca_30719_v3' => 'car', 'CBR_g17958' => 'cbr', 'CBR_g40516' => 'cbr', 'Cc00_g05350' => 'ccan', 'Cc01_g18690' => 'ccan', 'Cc03_g04830' => 'ccan', 'Cc03_g04850' => 'ccan', 'CDE02G4469' => 'cde', 'CDE06G0883' => 'cde', 'CDE06G1295' => 'cde', 'CDE06G1390' => 'cde', 'CDE07G0584' => 'cde', 'CDE07G1084' => 'cde', 'CDE08G1259' => 'cde', 'Cfa002341' => 'cfa', 'Cfa024337' => 'cfa', 'Ciclev10004749m.g' => 'ccl', 'Ciclev10006127m.g' => 'ccl', 'Ciclev10019720m.g' => 'ccl', 'Ciclev10022652m.g' => 'ccl', 'CiPaw.01G190400' => 'cil', 'CiPaw.01G190500' => 'cil', 'CiPaw.02G116400' => 'cil', 'CiPaw.02G116500' => 'cil', 'CiPaw.04G183000' => 'cil', 'CiPaw.04G183300' => 'cil', 'ClCG05G004610' => 'cla', 'ClCG05G004620' => 'cla', 'ClCG06G006730' => 'cla', 'ClCG06G006740' => 'cla', 'ClCG11G003690' => 'cla', 'COL.COLO4_08276' => 'col', 'COL.COLO4_08277' => 'col', 'COL.COLO4_15787' => 'col', 'COL.COLO4_15789' => 'col', 'Cpa.g.c44815' => 'cpa', 'Cpa.g.sc52.144' => 'cpa', 'Cpa.g.sc58.46' => 'cpa', 'Cpa.g.sc58.47' => 'cpa', 'Cre08.g360900' => 'cre', 'CsaV3_2G013030' => 'csa', 'CsaV3_2G013050' => 'csa', 'CsaV3_2G015620' => 'csa', 'CsaV3_3G012590' => 'csa', 'CsaV3_3G012600' => 'csa', 'CSS0001641' => 'camsi', 'CSS0008310' => 'camsi', 'CSS0013011' => 'camsi', 'CSS0017147' => 'camsi', 'CSS0022970' => 'camsi', 'CSS0025655' => 'camsi', 'CSS0028665' => 'camsi', 'CSS0029117' => 'camsi', 'CSS0032024' => 'camsi', 'CSS0039681' => 'camsi', 'CSS0046516' => 'camsi', 'CSS0050307' => 'camsi', 'DCAR_005871' => 'dca', 'DCAR_007342' => 'dca', 'DCAR_024228' => 'dca', 'DCAR_027277' => 'dca', 'DCAR_030718' => 'dca', 'Dinv20287' => 'din', 'Dinv22461' => 'din', 'Dinv22464' => 'din', 'Dinv29912' => 'din', 'Dinv29913' => 'din', 'Dinv34580' => 'din', 'Dinv34582' => 'din', 'Dinv44632' => 'din', 'Duzib052G0266' => 'dzi', 'Duzib133G0907' => 'dzi', 'Duzib133G1034' => 'dzi', 'Duzib138G0207' => 'dzi', 'Duzib138G0491' => 'dzi', 'Duzib151G0812' => 'dzi', 'Duzib151G1166' => 'dzi', 'Duzib168G0192' => 'dzi', 'Duzib211G0077' => 'dzi', 'Duzib212G0429' => 'dzi', 'Duzib212G0472' => 'dzi', 'ECA233G2617' => 'eca', 'ECA236G4188' => 'eca', 'ECA240G0936' => 'eca', 'ECA240G1129' => 'eca', 'ECA247G0623' => 'eca', 'EL10Ac5g10451' => 'bvu', 'EL10Ac5g10453' => 'bvu', 'EL10Ac5g10894' => 'bvu', 'Eucgr.H00192' => 'egr', 'Eucgr.H00193' => 'egr', 'Eucgr.H00194' => 'egr', 'Eucgr.J01562' => 'egr', 'Eucgr.K03301' => 'egr', 'FAN02G0632' => 'fan', 'FAN05G5378' => 'fan', 'FAN09G3247' => 'fan', 'FAN12G0435' => 'fan', 'FAN12G2426' => 'fan', 'FAN14G1707' => 'fan', 'FAN14G4725' => 'fan', 'FAN15G2071' => 'fan', 'FAN17G3065' => 'fan', 'FAN19G1376' => 'fan', 'FAN20G0354' => 'fan', 'FAN20G2429' => 'fan', 'FAN20G2658' => 'fan', 'FAN24G2343' => 'fan', 'FAN27G2362' => 'fan', 'FAN28G1765' => 'fan', 'FvH4_1g16020' => 'fve', 'FvH4_2g04890' => 'fve', 'FvH4_2g22270' => 'fve', 'FvH4_4g02630' => 'fve', 'FvH4_4g02640' => 'fve', 'FvH4_6g02650' => 'fve', 'Glyma.02G140600' => 'gma', 'Glyma.03G159900' => 'gma', 'Glyma.05G234800' => 'gma', 'Glyma.07G269600' => 'gma', 'Glyma.08G042300' => 'gma', 'Glyma.10G033500' => 'gma', 'Glyma.10G185200' => 'gma', 'Glyma.17G004300' => 'gma', 'Glyma.19G161900' => 'gma', 'Glyma.20G205100' => 'gma', 'Glyma.20G205200' => 'gma', 'Gohir.A01G139101' => 'ghi', 'Gohir.A02G035600' => 'ghi', 'Gohir.A02G117901' => 'ghi', 'Gohir.A07G210100' => 'ghi', 'Gohir.A07G210200' => 'ghi', 'Gohir.A08G061100' => 'ghi', 'Gohir.A09G223000' => 'ghi', 'Gohir.A09G223100' => 'ghi', 'Gohir.A10G113900' => 'ghi', 'Gohir.A10G114000' => 'ghi', 'Gohir.D02G042300' => 'ghi', 'Gohir.D07G216100' => 'ghi', 'Gohir.D07G216200' => 'ghi', 'Gohir.D08G070400' => 'ghi', 'Gohir.D09G225000' => 'ghi', 'Gohir.D09G225100' => 'ghi', 'Gohir.D10G152300' => 'ghi', 'Gohir.D10G153200' => 'ghi', 'Gohir.D11G133701' => 'ghi', 'Gorai.004G074100' => 'gra', 'Gorai.005G046800' => 'gra', 'Gorai.006G246500' => 'gra', 'Gorai.006G246600' => 'gra', 'Gorai.007G142900' => 'gra', 'Gorai.011G171000' => 'gra', 'Gorai.011G171100' => 'gra', 'Gorai.013G104300' => 'gra', 'Gorai.013G104400' => 'gra', 'GSVIVG01000754001' => 'vvi', 'GSVIVG01000756001' => 'vvi', 'GSVIVG01010903001' => 'vvi', 'GSVIVG01017623001' => 'vvi', 'GSVIVG01018113001' => 'vvi', 'GSVIVG01018116001' => 'vvi', 'GSVIVG01018118001' => 'vvi', 'HanXRQChr03g0076211' => 'han', 'HanXRQChr03g0092431' => 'han', 'HanXRQChr03g0092441' => 'han', 'HanXRQChr03g0092591' => 'han', 'HanXRQChr03g0092671' => 'han', 'HanXRQChr03g0092681' => 'han', 'HanXRQChr03g0092691' => 'han', 'HanXRQChr03g0092701' => 'han', 'HanXRQChr03g0092721' => 'han', 'HanXRQChr03g0092731' => 'han', 'HanXRQChr04g0113681' => 'han', 'HanXRQChr10g0281371' => 'han', 'HanXRQChr11g0337141' => 'han', 'HanXRQChr13g0424521' => 'han', 'HanXRQChr13g0424531' => 'han', 'HanXRQChr13g0424541' => 'han', 'HanXRQChr16g0498221' => 'han', 'Haze_04377' => 'cav', 'Haze_11298' => 'cav', 'Haze_24547' => 'cav', 'Haze_24550' => 'cav', 'Haze_26587' => 'cav', 'Hma1.2p1_0650F.1_g195410' => 'hma', 'Hma1.2p1_0893F.1_g233470' => 'hma', 'HPP92_006508' => 'vpl', 'HPP92_024780' => 'vpl', 'Hund02688' => 'sun', 'Hund09380' => 'sun', 'Hund09381' => 'sun', 'Hund09832' => 'sun', 'Hund09833' => 'sun', 'Hund11351' => 'sun', 'Hund11513' => 'sun', 'Lalb_Chr06g0162591' => 'lal', 'Lalb_Chr06g0162601' => 'lal', 'Lalb_Chr06g0169321' => 'lal', 'Lalb_Chr09g0330951' => 'lal', 'Lalb_Chr16g0387631' => 'lal', 'Lalb_Chr21g0306241' => 'lal', 'Lalb_Chr25g0290051' => 'lal', 'Lalb_Chr25g0290061' => 'lal', 'Lalb_Chr25g0290071' => 'lal', 'Lj1g0003876' => 'lja', 'Lj1P1207T36' => 'lonja', 'Lj2C1156G12' => 'lonja', 'Lj3A793G39' => 'lonja', 'Lj3C580G2' => 'lonja', 'Lj3C780G2' => 'lonja', 'Lj3C780T4' => 'lonja', 'Lj3C793G9' => 'lonja', 'Lj4g0012960' => 'lja', 'Lj5g0021252' => 'lja', 'Lj5g0021484' => 'lja', 'Lj5g0024528' => 'lja', 'Lj6A399T12' => 'lonja', 'Lj6A656G65' => 'lonja', 'Lsat_1_v5_gn_3_125500' => 'lsa', 'Lsat_1_v5_gn_3_125540' => 'lsa', 'Lsat_1_v5_gn_5_72701' => 'lsa', 'Lsat_1_v5_gn_8_91560' => 'lsa', 'Lsat_1_v5_gn_9_9640' => 'lsa', 'Manes.01G200600' => 'mes', 'Manes.01G200700' => 'mes', 'Manes.03G168900' => 'mes', 'Manes.03G169000' => 'mes', 'Manes.05G085801' => 'mes', 'Manes.05G086200' => 'mes', 'Manes.15G036700' => 'mes', 'Manes.15G036900' => 'mes', 'Mapoly0004s0172' => 'mpo', 'Mapoly0023s0001' => 'mpo', 'Mapoly0142s0012' => 'mpo', 'MBI01_g32854_MAGBIO' => 'mbi', 'MBI11_g24427_MAGBIO' => 'mbi', 'MBI11_g47319_MAGBIO' => 'mbi', 'MCO01G433' => 'mco', 'MD00G1187800' => 'mdo', 'MD04G1226500' => 'mdo', 'MD05G1203900' => 'mdo', 'MD10G1191100' => 'mdo', 'MD12G1243500' => 'mdo', 'MD13G1207000' => 'mdo', 'MD13G1207100' => 'mdo', 'MD16G1208600' => 'mdo', 'Medtr1g050352' => 'mtr', 'Medtr1g070385' => 'mtr', 'Medtr1g070450' => 'mtr', 'Medtr1g075200' => 'mtr', 'Medtr1g075250' => 'mtr', 'Medtr1g075260' => 'mtr', 'Medtr1g475250' => 'mtr', 'Medtr4g075450' => 'mtr', 'Medtr7g096300' => 'mtr', 'Medtr8g105110' => 'mtr', 'MELO3C006470.2' => 'cme', 'MELO3C006471.2' => 'cme', 'MELO3C020772.2' => 'cme', 'MELO3C026780.2' => 'cme', 'MELO3C026781.2' => 'cme', 'Migut.D00390' => 'egut', 'Migut.G00435' => 'egut', 'Migut.G00436' => 'egut', 'Migut.G00718' => 'egut', 'MSTRG.21891' => 'ama', 'MSTRG.26910' => 'ama', 'MSTRG.4099' => 'ama', 'MSTRG.9925' => 'ama', 'Nitab4.5_0000165g0010' => 'nta', 'Nitab4.5_0000209g0180' => 'nta', 'Nitab4.5_0000244g0440' => 'nta', 'Nitab4.5_0000525g0220' => 'nta', 'Nitab4.5_0001597g0020' => 'nta', 'Nitab4.5_0001878g0040' => 'nta', 'Nitab4.5_0001878g0060' => 'nta', 'Nitab4.5_0002838g0100' => 'nta', 'Nitab4.5_0002838g0120' => 'nta', 'Nitab4.5_0004798g0030' => 'nta', 'Nitab4.5_0005420g0010' => 'nta', 'Nitab4.5_0005507g0010' => 'nta', 'Nitab4.5_0005574g0020' => 'nta', 'Nitab4.5_0005838g0010' => 'nta', 'Nitab4.5_0010580g0020' => 'nta', 'Nn1g02599' => 'nnu', 'Nn1g02608' => 'nnu', 'Nn3g17742' => 'nnu', 'Nn3g19534' => 'nnu', 'Nn3g19535' => 'nnu', 'Oeu008790.1' => 'oeu', 'Oeu008792.1' => 'oeu', 'Oeu032590.1' => 'oeu', 'Oeu035349.1' => 'oeu', 'Oeu049791.1' => 'oeu', 'Os01g0774500' => 'osa', 'Os03g0628800' => 'osa', 'Os03g0798600' => 'osa', 'Os05g0508800' => 'osa', 'Peaxi162Scf00036g02018' => 'pax', 'Peaxi162Scf00578g00032' => 'pax', 'Peaxi162Scf00578g00317' => 'pax', 'Peaxi162Scf00785g00114' => 'pax', 'Peaxi162Scf00813g00119' => 'pax', 'Peaxi162Scf00906g00227' => 'pax', 'PGR004G0875' => 'pgr', 'PGR004G2424' => 'pgr', 'PGR031G1239' => 'pgr', 'PGR031G2474' => 'pgr', 'PGR044G0423' => 'pgr', 'PGSC0003DMG400001128' => 'stu', 'PGSC0003DMG400007336' => 'stu', 'PGSC0003DMG400016318' => 'stu', 'PGSC0003DMG400016319' => 'stu', 'PGSC0003DMG400018074' => 'stu', 'Phvul.001G157700' => 'pvu', 'Phvul.002G148550' => 'pvu', 'Phvul.002G320200' => 'pvu', 'Phvul.003G089200' => 'pvu', 'Phvul.007G126000' => 'pvu', 'Phvul.007G126100' => 'pvu', 'Phvul.007G178000' => 'pvu', 'Phvul.007G178200' => 'pvu', 'Potri.002G043000' => 'ptr', 'Potri.002G043200' => 'ptr', 'Potri.003G123750' => 'ptr', 'Potri.005G055401' => 'ptr', 'Potri.005G219700' => 'ptr', 'Potri.005G220000' => 'ptr', 'Potri.008G161901' => 'ptr', 'Potri.008G162000' => 'ptr', 'Potri.008G162400' => 'ptr', 'Potri.010G076900' => 'ptr', 'Pp3c12_9180' => 'ppa', 'Pp3c13_19770' => 'ppa', 'Pp3c14_22950' => 'ppa', 'Pp3c16_12160' => 'ppa', 'Pp3c27_7820' => 'ppa', 'Pp3c2_3490' => 'ppa', 'Pp3c3_23700' => 'ppa', 'Pp3c3_36520' => 'ppa', 'Pp3c4_15250' => 'ppa', 'PRCOL_00007002' => 'pco', 'Prupe.1G030600' => 'ppe', 'Prupe.1G030700' => 'ppe', 'Prupe.6G345200' => 'ppe', 'Prupe.8G230300' => 'ppe', 'Prupe.8G230500' => 'ppe', 'Psat3g059600' => 'psa', 'Psat5g200920' => 'psa', 'Psat6g056440' => 'psa', 'Psat6g057360' => 'psa', 'Psat6g134120' => 'psa', 'Psat6g134160' => 'psa', 'Psat7g008640' => 'psa', 'Psat7g185240' => 'psa', 'PSO017G1330' => 'pso', 'PSO063G6097' => 'pso', 'PSO170G0835' => 'pso', 'PSO170G2499' => 'pso', 'PSO210G5058' => 'pso', 'PSO210G6154' => 'pso', 'PSO585G0031' => 'pso', 'PSO832G0264' => 'pso', 'PSO832G4288' => 'pso', 'QL03p027355' => 'qlo', 'QL03p027430' => 'qlo', 'QL04p081380' => 'qlo', 'QL06p015642' => 'qlo', 'QL06p015650' => 'qlo', 'QL06p015686' => 'qlo', 'QL12p042927' => 'qlo', 'QL93p1863_0035' => 'qlo', 'RcHm_v2.0_Chr3g0450581' => 'rch', 'RcHm_v2.0_Chr4g0390371' => 'rch', 'RcHm_v2.0_Chr4g0390381' => 'rch', 'RcHm_v2.0_Chr4g0390491' => 'rch', 'RcHm_v2.0_Chr4g0390501' => 'rch', 'RcHm_v2.0_Chr6g0289231' => 'rch', 'Rhsim04G0190400' => 'rsi', 'Rhsim04G0190500' => 'rsi', 'Rhsim04G0190600' => 'rsi', 'Rhsim13G0031400' => 'rsi', 'Rhsim13G0165600' => 'rsi', 'RhsimUnG0114600' => 'rsi', 'RhsimUnG0114700' => 'rsi', 'Sabra02G0034800' => 'sbr', 'Sabra02G0035100' => 'sbr', 'Sabra05G0168600' => 'sbr', 'Sabra05G0168800' => 'sbr', 'Sabra08G0123700' => 'sbr', 'Sabra10G0031900' => 'sbr', 'Sabra13G0039000' => 'sbr', 'SalBow2G0782' => 'sbo', 'SalBow2G1403' => 'sbo', 'SalBow4G0074' => 'sbo', 'SalBow4G2635' => 'sbo', 'SalBow5G3010' => 'sbo', 'Sc05g0000870' => 'sci', 'Sc05g0000890' => 'sci', 'Sc13g0005000' => 'sci', 'Sc13g0005030' => 'sci', 'Sc19g0003790' => 'sci', 'Sc19g0003800' => 'sci', 'Sed0003467' => 'sed', 'Sed0009355' => 'sed', 'Sed0009894' => 'sed', 'Sed0011972' => 'sed', 'Sed0021483' => 'sed', 'Sed0021750' => 'sed', 'Sed0026279' => 'sed', 'SEGI_05312' => 'sgi', 'SEGI_10112' => 'sgi', 'SEGI_15835' => 'sgi', 'SEGI_30386' => 'sgi', 'SEGI_34122' => 'sgi', 'SEGI_35063' => 'sgi', 'SGA_v2.0_scaffold101G29794' => 'sas', 'SGA_v2.0_scaffold1G00573' => 'sas', 'SGA_v2.0_scaffold79G25637' => 'sas', 'SGA_v2.0_scaffold88G27283' => 'sas', 'SGA_v2.0_scaffold88G27285' => 'sas', 'SGA_v2.0_scaffold88G27331' => 'sas', 'SHI09937' => 'shi', 'SMO119G0302' => 'smo', 'SMO137G0231' => 'smo', 'SMO367G1151' => 'smo', 'Solyc02g082000.3' => 'sly', 'Solyc06g031670.3' => 'sly', 'Solyc06g053810.3' => 'sly', 'Solyc07g025457.1' => 'sly', 'Solyc08g059740.1' => 'sly', 'Solyc08g059750.3' => 'sly', 'Solyc09g083370.3' => 'sly', 'Solyc12g038950.3' => 'sly', 'Sopen02g026630' => 'spe', 'Sopen06g018930' => 'spe', 'Sopen06g018940' => 'spe', 'Sopen08g009460' => 'spe', 'Sopen09g032290' => 'spe', 'Sp1g03080' => 'spa', 'Sp1g03090' => 'spa', 'Sp1g05480' => 'spa', 'Sp2g07860' => 'spa', 'Sp2g08430' => 'spa', 'Sp2g08440' => 'spa', 'Sp2g26200' => 'spa', 'Sp4g13170' => 'spa', 'Sp6g33840' => 'spa', 'SpUn1204_0010' => 'spa', 'TAR365G0908' => 'tar', 'TAR381G1270' => 'tar', 'TAR381G1651' => 'tar', 'TAR625G1131' => 'tar', 'TAR633G0962' => 'tar', 'TAR633G1729' => 'tar', 'TAR633G1864' => 'tar', 'TAR636G0221' => 'tar', 'TAR636G0314' => 'tar', 'TAR636G3202' => 'tar', 'THA.LOC104800805' => 'tha', 'THA.LOC104801096' => 'tha', 'THA.LOC104801555' => 'tha', 'THA.LOC104808491' => 'tha', 'THA.LOC104808595' => 'tha', 'THA.LOC104815985' => 'tha', 'THA.LOC104822250' => 'tha', 'THA.LOC104826071' => 'tha', 'Thecc.01G265200' => 'tca', 'Thecc.01G265300' => 'tca', 'Thecc.01G265700' => 'tca', 'Thecc.03G109100' => 'tca', 'Thecc.04G245900' => 'tca', 'Thecc.04G246000' => 'tca', 'Thhalv10003334m.g' => 'esa', 'Thhalv10005508m.g' => 'esa', 'Thhalv10005643m.g' => 'esa', 'Thhalv10007316m.g' => 'esa', 'Thhalv10009006m.g' => 'esa', 'Thhalv10009309m.g' => 'esa', 'Thhalv10014917m.g' => 'esa', 'Thhalv10014919m.g' => 'esa', 'Thhalv10015393m.g' => 'esa', 'Thhalv10016515m.g' => 'esa', 'Thhalv10029242m.g' => 'esa', 'TPR.G16654' => 'tpr', 'TPR.G20589' => 'tpr', 'TPR.G23029' => 'tpr', 'TPR.G27731' => 'tpr', 'TPR.G28889' => 'tpr', 'TPR.G28899' => 'tpr', 'TPR.G30846' => 'tpr', 'TPR.G5452' => 'tpr', 'TPR.G5713' => 'tpr', 'TPR.G9046' => 'tpr', 'TPR.G9061' => 'tpr', 'TWI09G1075' => 'twi', 'TWI12G0806' => 'twi', 'TWI18G0108' => 'twi', 'TWI53G1361' => 'twi', 'TWI73G0185' => 'twi', 'TWI73G0427' => 'twi', 'unitig_37.g12001' => 'ugi', 'unitig_747.g21660' => 'ugi', 'unitig_748.g7232' => 'ugi', 'unitig_748.g7315' => 'ugi', 'unitig_85.g27262' => 'ugi', 'unitig_92.g28220' => 'ugi', 'vmacro02632' => 'vma', 'vmacro08410' => 'vma', 'vmacro08411' => 'vma', 'vmacro15407' => 'vma', 'VMungo0251G3619' => 'vmu', 'VMungo0720G1204' => 'vmu', 'VMungo0720G1918' => 'vmu', 'VMungo0720G2387' => 'vmu', 'VMungo0720G2961' => 'vmu', 'VMungo1215G2154' => 'vmu', 'VMungo1383G2411' => 'vmu', 'Zm00001eb051130' => 'zma', 'Zm00001eb116830' => 'zma', 'Zm00001eb116850' => 'zma', 'Zm00001eb151740' => 'zma', 'Zm00001eb292360' => 'zma', 'Zm00001eb301640' => 'zma' ), 'gf_id' => 'HOM05D000856', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000856' ), 'data_identifier' => 'HOM05D000856', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000856', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p00010' => 'bna', 'A03p04160' => 'bna', 'A03p17160' => 'bna', 'A04p23370' => 'bna', 'A05p14860' => 'bna', 'A08p37020' => 'bna', 'A09p08050' => 'bna', 'A09p66800' => 'bna', 'A09p67940' => 'bna', 'A10p02680' => 'bna', 'A10p05320' => 'bna', 'Aa31LG1G20560' => 'aar', 'Aa31LG1G20610' => 'aar', 'Aa31LG1G7810' => 'aar', 'Aa31LG5G3590' => 'aar', 'Aa31LG5G6140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3819' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4683' => 'aag', 'Actinidia04480' => 'ach', 'Actinidia05466' => 'ach', 'Actinidia08445' => 'ach', 'Actinidia21170' => 'ach', 'Actinidia24812' => 'ach', 'Actinidia24951' => 'ach', 'Actinidia40088' => 'ach', 'Ah.02g111660' => 'amhyb', 'Ah.11g048900' => 'amhyb', 'Ah.11g049910' => 'amhyb', 'AL1G13870' => 'aly', 'AL1G13880' => 'aly', 'AL1G16760' => 'aly', 'AL390U10020' => 'aly', 'AL4G25520' => 'aly', 'AL6G19890' => 'aly', 'AL6G19900' => 'aly', 'AL6G19910' => 'aly', 'AL8G40100' => 'aly', 'Aqoxy2G03562' => 'aox', 'Aqoxy5G00316' => 'aox', 'Aqoxy5G00926' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1628KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1H403S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2FU6SJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.882I6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8YRY2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YN1SN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AF70II' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZA8L1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F916KL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHRD8H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KTZ8QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S22EMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8M29T' => 'arhy', 'AT1G04270' => 'ath', 'AT1G04280' => 'ath', 'AT1G06750' => 'ath', 'AT1G33850' => 'ath', 'AT2G30630' => 'ath', 'AT5G09490' => 'ath', 'AT5G09500' => 'ath', 'AT5G09510' => 'ath', 'AT5G43640' => 'ath', 'AT5G63070' => 'ath', 'ATR0605G315' => 'atr', 'Atru.chr11.175' => 'acertr', 'Atru.chr11.653' => 'acertr', 'Atru.chr3.1616' => 'acertr', 'Atru.chr4.2230' => 'acertr', 'Atru.chr4.2232' => 'acertr', 'Atru.chr5.1598' => 'acertr', 'Atru.chr5.1600' => 'acertr', 'Atru.chr5.2188' => 'acertr', 'AUR62008326' => 'cqu', 'AUR62011922' => 'cqu', 'AUR62011924' => 'cqu', 'AUR62021771' => 'cqu', 'AUR62032237' => 'cqu', 'AUR62032240' => 'cqu', 'BcaB01g05572' => 'bca', 'BcaB02g10337' => 'bca', 'BcaB04g19944' => 'bca', 'BcaB05g21548' => 'bca', 'BcaB05g21549' => 'bca', 'BcaB05g23227' => 'bca', 'BcaB06g26256' => 'bca', 'BcaB06g26257' => 'bca', 'BcaB06g28379' => 'bca', 'BcaC02g11159' => 'bca', 'BcaC03g13258' => 'bca', 'BcaC03g13259' => 'bca', 'BcaC05g24456' => 'bca', 'BcaC05g24457' => 'bca', 'BcaC07g36922' => 'bca', 'BcaC07g36923' => 'bca', 'BcaC07g42050' => 'bca', 'BcaC07g42176' => 'bca', 'BcaC07g42195' => 'bca', 'BcaC07g42196' => 'bca', 'BcaNung06674' => 'bca', 'BolC2t06351H' => 'bol', 'BolC2t06352H' => 'bol', 'BolC3t12993H' => 'bol', 'BolC4t23525H' => 'bol', 'BolC4t27475H' => 'bol', 'BolC5t29025H' => 'bol', 'BolC5t29026H' => 'bol', 'BolC8t46898H' => 'bol', 'BolC8t46899H' => 'bol', 'BolC8t52630H' => 'bol', 'BolC8t52765H' => 'bol', 'BolC9t53824H' => 'bol', 'BraA03t09760Z' => 'bra', 'BraA03t10990Z' => 'bra', 'BraA05t20413Z' => 'bra', 'BraA08t35602Z' => 'bra', 'BraA09t36458Z' => 'bra', 'BraA09t42018Z' => 'bra', 'BraA09t42129Z' => 'bra', 'BraA10t42536Z' => 'bra', 'BraA10t42537Z' => 'bra', 'C01p10690' => 'bna', 'C02p03890' => 'bna', 'C02p03900' => 'bna', 'C03p04620' => 'bna', 'C04p19870' => 'bna', 'C04p59670' => 'bna', 'C05p02460' => 'bna', 'C05p02470' => 'bna', 'C08p00980' => 'bna', 'C08p00990' => 'bna', 'C08p51030' => 'bna', 'C08p52360' => 'bna', 'C09p09120' => 'bna', 'CAN.G19.15' => 'can', 'CAN.G251.10' => 'can', 'CAN.G251.9' => 'can', 'CAN.G398.24' => 'can', 'CAN.G410.32' => 'can', 'CAN.G881.2' => 'can', 'CANSAT01G3025' => 'cansat', 'CANSAT78G1211' => 'cansat', 'CANSAT78G1218' => 'cansat', 'CANSAT78G1521' => 'cansat', 'CANSAT78G1670' => 'cansat', 'CARHR003600' => 'chi', 'CARHR003610' => 'chi', 'CARHR006290' => 'chi', 'CARHR006430' => 'chi', 'CARHR124110' => 'chi', 'CARHR203870' => 'chi', 'CARHR203880' => 'chi', 'CARHR203890' => 'chi', 'CARHR276880' => 'chi', 'Carub.0001s0346' => 'cru', 'Carub.0001s0347' => 'cru', 'Carub.0001s0607' => 'cru', 'Carub.0003s2768' => 'cru', 'Carub.0003s2769' => 'cru', 'Carub.0004s1178' => 'cru', 'Carub.0006s0806' => 'cru', 'Carub.0006s0807' => 'cru', 'Carub.0006s0808' => 'cru', 'Carub.0008s0501' => 'cru', 'Carub.0008s2379' => 'cru', 'Ca_08655_v3' => 'car', 'Ca_08922_v3' => 'car', 'Ca_08923_v3' => 'car', 'Ca_09119_v3' => 'car', 'Ca_09703_v3' => 'car', 'Ca_09705_v3' => 'car', 'Ca_09835_v3' => 'car', 'Ca_26403_v3' => 'car', 'Ca_30719_v3' => 'car', 'CBR_g17958' => 'cbr', 'CBR_g40516' => 'cbr', 'Cc00_g05350' => 'ccan', 'Cc01_g18690' => 'ccan', 'Cc03_g04830' => 'ccan', 'Cc03_g04850' => 'ccan', 'CDE02G4469' => 'cde', 'CDE06G0883' => 'cde', 'CDE06G1295' => 'cde', 'CDE06G1390' => 'cde', 'CDE07G0584' => 'cde', 'CDE07G1084' => 'cde', 'CDE08G1259' => 'cde', 'Cfa002341' => 'cfa', 'Cfa024337' => 'cfa', 'Ciclev10004749m.g' => 'ccl', 'Ciclev10006127m.g' => 'ccl', 'Ciclev10019720m.g' => 'ccl', 'Ciclev10022652m.g' => 'ccl', 'CiPaw.01G190400' => 'cil', 'CiPaw.01G190500' => 'cil', 'CiPaw.02G116400' => 'cil', 'CiPaw.02G116500' => 'cil', 'CiPaw.04G183000' => 'cil', 'CiPaw.04G183300' => 'cil', 'ClCG05G004610' => 'cla', 'ClCG05G004620' => 'cla', 'ClCG06G006730' => 'cla', 'ClCG06G006740' => 'cla', 'ClCG11G003690' => 'cla', 'COL.COLO4_08276' => 'col', 'COL.COLO4_08277' => 'col', 'COL.COLO4_15787' => 'col', 'COL.COLO4_15789' => 'col', 'Cpa.g.c44815' => 'cpa', 'Cpa.g.sc52.144' => 'cpa', 'Cpa.g.sc58.46' => 'cpa', 'Cpa.g.sc58.47' => 'cpa', 'Cre08.g360900' => 'cre', 'CsaV3_2G013030' => 'csa', 'CsaV3_2G013050' => 'csa', 'CsaV3_2G015620' => 'csa', 'CsaV3_3G012590' => 'csa', 'CsaV3_3G012600' => 'csa', 'CSS0001641' => 'camsi', 'CSS0008310' => 'camsi', 'CSS0013011' => 'camsi', 'CSS0017147' => 'camsi', 'CSS0022970' => 'camsi', 'CSS0025655' => 'camsi', 'CSS0028665' => 'camsi', 'CSS0029117' => 'camsi', 'CSS0032024' => 'camsi', 'CSS0039681' => 'camsi', 'CSS0046516' => 'camsi', 'CSS0050307' => 'camsi', 'DCAR_005871' => 'dca', 'DCAR_007342' => 'dca', 'DCAR_024228' => 'dca', 'DCAR_027277' => 'dca', 'DCAR_030718' => 'dca', 'Dinv20287' => 'din', 'Dinv22461' => 'din', 'Dinv22464' => 'din', 'Dinv29912' => 'din', 'Dinv29913' => 'din', 'Dinv34580' => 'din', 'Dinv34582' => 'din', 'Dinv44632' => 'din', 'Duzib052G0266' => 'dzi', 'Duzib133G0907' => 'dzi', 'Duzib133G1034' => 'dzi', 'Duzib138G0207' => 'dzi', 'Duzib138G0491' => 'dzi', 'Duzib151G0812' => 'dzi', 'Duzib151G1166' => 'dzi', 'Duzib168G0192' => 'dzi', 'Duzib211G0077' => 'dzi', 'Duzib212G0429' => 'dzi', 'Duzib212G0472' => 'dzi', 'ECA233G2617' => 'eca', 'ECA236G4188' => 'eca', 'ECA240G0936' => 'eca', 'ECA240G1129' => 'eca', 'ECA247G0623' => 'eca', 'EL10Ac5g10451' => 'bvu', 'EL10Ac5g10453' => 'bvu', 'EL10Ac5g10894' => 'bvu', 'Eucgr.H00192' => 'egr', 'Eucgr.H00193' => 'egr', 'Eucgr.H00194' => 'egr', 'Eucgr.J01562' => 'egr', 'Eucgr.K03301' => 'egr', 'FAN02G0632' => 'fan', 'FAN05G5378' => 'fan', 'FAN09G3247' => 'fan', 'FAN12G0435' => 'fan', 'FAN12G2426' => 'fan', 'FAN14G1707' => 'fan', 'FAN14G4725' => 'fan', 'FAN15G2071' => 'fan', 'FAN17G3065' => 'fan', 'FAN19G1376' => 'fan', 'FAN20G0354' => 'fan', 'FAN20G2429' => 'fan', 'FAN20G2658' => 'fan', 'FAN24G2343' => 'fan', 'FAN27G2362' => 'fan', 'FAN28G1765' => 'fan', 'FvH4_1g16020' => 'fve', 'FvH4_2g04890' => 'fve', 'FvH4_2g22270' => 'fve', 'FvH4_4g02630' => 'fve', 'FvH4_4g02640' => 'fve', 'FvH4_6g02650' => 'fve', 'Glyma.02G140600' => 'gma', 'Glyma.03G159900' => 'gma', 'Glyma.05G234800' => 'gma', 'Glyma.07G269600' => 'gma', 'Glyma.08G042300' => 'gma', 'Glyma.10G033500' => 'gma', 'Glyma.10G185200' => 'gma', 'Glyma.17G004300' => 'gma', 'Glyma.19G161900' => 'gma', 'Glyma.20G205100' => 'gma', 'Glyma.20G205200' => 'gma', 'Gohir.A01G139101' => 'ghi', 'Gohir.A02G035600' => 'ghi', 'Gohir.A02G117901' => 'ghi', 'Gohir.A07G210100' => 'ghi', 'Gohir.A07G210200' => 'ghi', 'Gohir.A08G061100' => 'ghi', 'Gohir.A09G223000' => 'ghi', 'Gohir.A09G223100' => 'ghi', 'Gohir.A10G113900' => 'ghi', 'Gohir.A10G114000' => 'ghi', 'Gohir.D02G042300' => 'ghi', 'Gohir.D07G216100' => 'ghi', 'Gohir.D07G216200' => 'ghi', 'Gohir.D08G070400' => 'ghi', 'Gohir.D09G225000' => 'ghi', 'Gohir.D09G225100' => 'ghi', 'Gohir.D10G152300' => 'ghi', 'Gohir.D10G153200' => 'ghi', 'Gohir.D11G133701' => 'ghi', 'Gorai.004G074100' => 'gra', 'Gorai.005G046800' => 'gra', 'Gorai.006G246500' => 'gra', 'Gorai.006G246600' => 'gra', 'Gorai.007G142900' => 'gra', 'Gorai.011G171000' => 'gra', 'Gorai.011G171100' => 'gra', 'Gorai.013G104300' => 'gra', 'Gorai.013G104400' => 'gra', 'GSVIVG01000754001' => 'vvi', 'GSVIVG01000756001' => 'vvi', 'GSVIVG01010903001' => 'vvi', 'GSVIVG01017623001' => 'vvi', 'GSVIVG01018113001' => 'vvi', 'GSVIVG01018116001' => 'vvi', 'GSVIVG01018118001' => 'vvi', 'HanXRQChr03g0076211' => 'han', 'HanXRQChr03g0092431' => 'han', 'HanXRQChr03g0092441' => 'han', 'HanXRQChr03g0092591' => 'han', 'HanXRQChr03g0092671' => 'han', 'HanXRQChr03g0092681' => 'han', 'HanXRQChr03g0092691' => 'han', 'HanXRQChr03g0092701' => 'han', 'HanXRQChr03g0092721' => 'han', 'HanXRQChr03g0092731' => 'han', 'HanXRQChr04g0113681' => 'han', 'HanXRQChr10g0281371' => 'han', 'HanXRQChr11g0337141' => 'han', 'HanXRQChr13g0424521' => 'han', 'HanXRQChr13g0424531' => 'han', 'HanXRQChr13g0424541' => 'han', 'HanXRQChr16g0498221' => 'han', 'Haze_04377' => 'cav', 'Haze_11298' => 'cav', 'Haze_24547' => 'cav', 'Haze_24550' => 'cav', 'Haze_26587' => 'cav', 'Hma1.2p1_0650F.1_g195410' => 'hma', 'Hma1.2p1_0893F.1_g233470' => 'hma', 'HPP92_006508' => 'vpl', 'HPP92_024780' => 'vpl', 'Hund02688' => 'sun', 'Hund09380' => 'sun', 'Hund09381' => 'sun', 'Hund09832' => 'sun', 'Hund09833' => 'sun', 'Hund11351' => 'sun', 'Hund11513' => 'sun', 'Lalb_Chr06g0162591' => 'lal', 'Lalb_Chr06g0162601' => 'lal', 'Lalb_Chr06g0169321' => 'lal', 'Lalb_Chr09g0330951' => 'lal', 'Lalb_Chr16g0387631' => 'lal', 'Lalb_Chr21g0306241' => 'lal', 'Lalb_Chr25g0290051' => 'lal', 'Lalb_Chr25g0290061' => 'lal', 'Lalb_Chr25g0290071' => 'lal', 'Lj1g0003876' => 'lja', 'Lj1P1207T36' => 'lonja', 'Lj2C1156G12' => 'lonja', 'Lj3A793G39' => 'lonja', 'Lj3C580G2' => 'lonja', 'Lj3C780G2' => 'lonja', 'Lj3C780T4' => 'lonja', 'Lj3C793G9' => 'lonja', 'Lj4g0012960' => 'lja', 'Lj5g0021252' => 'lja', 'Lj5g0021484' => 'lja', 'Lj5g0024528' => 'lja', 'Lj6A399T12' => 'lonja', 'Lj6A656G65' => 'lonja', 'Lsat_1_v5_gn_3_125500' => 'lsa', 'Lsat_1_v5_gn_3_125540' => 'lsa', 'Lsat_1_v5_gn_5_72701' => 'lsa', 'Lsat_1_v5_gn_8_91560' => 'lsa', 'Lsat_1_v5_gn_9_9640' => 'lsa', 'Manes.01G200600' => 'mes', 'Manes.01G200700' => 'mes', 'Manes.03G168900' => 'mes', 'Manes.03G169000' => 'mes', 'Manes.05G085801' => 'mes', 'Manes.05G086200' => 'mes', 'Manes.15G036700' => 'mes', 'Manes.15G036900' => 'mes', 'Mapoly0004s0172' => 'mpo', 'Mapoly0023s0001' => 'mpo', 'Mapoly0142s0012' => 'mpo', 'MBI01_g32854_MAGBIO' => 'mbi', 'MBI11_g24427_MAGBIO' => 'mbi', 'MBI11_g47319_MAGBIO' => 'mbi', 'MCO01G433' => 'mco', 'MD00G1187800' => 'mdo', 'MD04G1226500' => 'mdo', 'MD05G1203900' => 'mdo', 'MD10G1191100' => 'mdo', 'MD12G1243500' => 'mdo', 'MD13G1207000' => 'mdo', 'MD13G1207100' => 'mdo', 'MD16G1208600' => 'mdo', 'Medtr1g050352' => 'mtr', 'Medtr1g070385' => 'mtr', 'Medtr1g070450' => 'mtr', 'Medtr1g075200' => 'mtr', 'Medtr1g075250' => 'mtr', 'Medtr1g075260' => 'mtr', 'Medtr1g475250' => 'mtr', 'Medtr4g075450' => 'mtr', 'Medtr7g096300' => 'mtr', 'Medtr8g105110' => 'mtr', 'MELO3C006470.2' => 'cme', 'MELO3C006471.2' => 'cme', 'MELO3C020772.2' => 'cme', 'MELO3C026780.2' => 'cme', 'MELO3C026781.2' => 'cme', 'Migut.D00390' => 'egut', 'Migut.G00435' => 'egut', 'Migut.G00436' => 'egut', 'Migut.G00718' => 'egut', 'MSTRG.21891' => 'ama', 'MSTRG.26910' => 'ama', 'MSTRG.4099' => 'ama', 'MSTRG.9925' => 'ama', 'Nitab4.5_0000165g0010' => 'nta', 'Nitab4.5_0000209g0180' => 'nta', 'Nitab4.5_0000244g0440' => 'nta', 'Nitab4.5_0000525g0220' => 'nta', 'Nitab4.5_0001597g0020' => 'nta', 'Nitab4.5_0001878g0040' => 'nta', 'Nitab4.5_0001878g0060' => 'nta', 'Nitab4.5_0002838g0100' => 'nta', 'Nitab4.5_0002838g0120' => 'nta', 'Nitab4.5_0004798g0030' => 'nta', 'Nitab4.5_0005420g0010' => 'nta', 'Nitab4.5_0005507g0010' => 'nta', 'Nitab4.5_0005574g0020' => 'nta', 'Nitab4.5_0005838g0010' => 'nta', 'Nitab4.5_0010580g0020' => 'nta', 'Nn1g02599' => 'nnu', 'Nn1g02608' => 'nnu', 'Nn3g17742' => 'nnu', 'Nn3g19534' => 'nnu', 'Nn3g19535' => 'nnu', 'Oeu008790.1' => 'oeu', 'Oeu008792.1' => 'oeu', 'Oeu032590.1' => 'oeu', 'Oeu035349.1' => 'oeu', 'Oeu049791.1' => 'oeu', 'Os01g0774500' => 'osa', 'Os03g0628800' => 'osa', 'Os03g0798600' => 'osa', 'Os05g0508800' => 'osa', 'Peaxi162Scf00036g02018' => 'pax', 'Peaxi162Scf00578g00032' => 'pax', 'Peaxi162Scf00578g00317' => 'pax', 'Peaxi162Scf00785g00114' => 'pax', 'Peaxi162Scf00813g00119' => 'pax', 'Peaxi162Scf00906g00227' => 'pax', 'PGR004G0875' => 'pgr', 'PGR004G2424' => 'pgr', 'PGR031G1239' => 'pgr', 'PGR031G2474' => 'pgr', 'PGR044G0423' => 'pgr', 'PGSC0003DMG400001128' => 'stu', 'PGSC0003DMG400007336' => 'stu', 'PGSC0003DMG400016318' => 'stu', 'PGSC0003DMG400016319' => 'stu', 'PGSC0003DMG400018074' => 'stu', 'Phvul.001G157700' => 'pvu', 'Phvul.002G148550' => 'pvu', 'Phvul.002G320200' => 'pvu', 'Phvul.003G089200' => 'pvu', 'Phvul.007G126000' => 'pvu', 'Phvul.007G126100' => 'pvu', 'Phvul.007G178000' => 'pvu', 'Phvul.007G178200' => 'pvu', 'Potri.002G043000' => 'ptr', 'Potri.002G043200' => 'ptr', 'Potri.003G123750' => 'ptr', 'Potri.005G055401' => 'ptr', 'Potri.005G219700' => 'ptr', 'Potri.005G220000' => 'ptr', 'Potri.008G161901' => 'ptr', 'Potri.008G162000' => 'ptr', 'Potri.008G162400' => 'ptr', 'Potri.010G076900' => 'ptr', 'Pp3c12_9180' => 'ppa', 'Pp3c13_19770' => 'ppa', 'Pp3c14_22950' => 'ppa', 'Pp3c16_12160' => 'ppa', 'Pp3c27_7820' => 'ppa', 'Pp3c2_3490' => 'ppa', 'Pp3c3_23700' => 'ppa', 'Pp3c3_36520' => 'ppa', 'Pp3c4_15250' => 'ppa', 'PRCOL_00007002' => 'pco', 'Prupe.1G030600' => 'ppe', 'Prupe.1G030700' => 'ppe', 'Prupe.6G345200' => 'ppe', 'Prupe.8G230300' => 'ppe', 'Prupe.8G230500' => 'ppe', 'Psat3g059600' => 'psa', 'Psat5g200920' => 'psa', 'Psat6g056440' => 'psa', 'Psat6g057360' => 'psa', 'Psat6g134120' => 'psa', 'Psat6g134160' => 'psa', 'Psat7g008640' => 'psa', 'Psat7g185240' => 'psa', 'PSO017G1330' => 'pso', 'PSO063G6097' => 'pso', 'PSO170G0835' => 'pso', 'PSO170G2499' => 'pso', 'PSO210G5058' => 'pso', 'PSO210G6154' => 'pso', 'PSO585G0031' => 'pso', 'PSO832G0264' => 'pso', 'PSO832G4288' => 'pso', 'QL03p027355' => 'qlo', 'QL03p027430' => 'qlo', 'QL04p081380' => 'qlo', 'QL06p015642' => 'qlo', 'QL06p015650' => 'qlo', 'QL06p015686' => 'qlo', 'QL12p042927' => 'qlo', 'QL93p1863_0035' => 'qlo', 'RcHm_v2.0_Chr3g0450581' => 'rch', 'RcHm_v2.0_Chr4g0390371' => 'rch', 'RcHm_v2.0_Chr4g0390381' => 'rch', 'RcHm_v2.0_Chr4g0390491' => 'rch', 'RcHm_v2.0_Chr4g0390501' => 'rch', 'RcHm_v2.0_Chr6g0289231' => 'rch', 'Rhsim04G0190400' => 'rsi', 'Rhsim04G0190500' => 'rsi', 'Rhsim04G0190600' => 'rsi', 'Rhsim13G0031400' => 'rsi', 'Rhsim13G0165600' => 'rsi', 'RhsimUnG0114600' => 'rsi', 'RhsimUnG0114700' => 'rsi', 'Sabra02G0034800' => 'sbr', 'Sabra02G0035100' => 'sbr', 'Sabra05G0168600' => 'sbr', 'Sabra05G0168800' => 'sbr', 'Sabra08G0123700' => 'sbr', 'Sabra10G0031900' => 'sbr', 'Sabra13G0039000' => 'sbr', 'SalBow2G0782' => 'sbo', 'SalBow2G1403' => 'sbo', 'SalBow4G0074' => 'sbo', 'SalBow4G2635' => 'sbo', 'SalBow5G3010' => 'sbo', 'Sc05g0000870' => 'sci', 'Sc05g0000890' => 'sci', 'Sc13g0005000' => 'sci', 'Sc13g0005030' => 'sci', 'Sc19g0003790' => 'sci', 'Sc19g0003800' => 'sci', 'Sed0003467' => 'sed', 'Sed0009355' => 'sed', 'Sed0009894' => 'sed', 'Sed0011972' => 'sed', 'Sed0021483' => 'sed', 'Sed0021750' => 'sed', 'Sed0026279' => 'sed', 'SEGI_05312' => 'sgi', 'SEGI_10112' => 'sgi', 'SEGI_15835' => 'sgi', 'SEGI_30386' => 'sgi', 'SEGI_34122' => 'sgi', 'SEGI_35063' => 'sgi', 'SGA_v2.0_scaffold101G29794' => 'sas', 'SGA_v2.0_scaffold1G00573' => 'sas', 'SGA_v2.0_scaffold79G25637' => 'sas', 'SGA_v2.0_scaffold88G27283' => 'sas', 'SGA_v2.0_scaffold88G27285' => 'sas', 'SGA_v2.0_scaffold88G27331' => 'sas', 'SHI09937' => 'shi', 'SMO119G0302' => 'smo', 'SMO137G0231' => 'smo', 'SMO367G1151' => 'smo', 'Solyc02g082000.3' => 'sly', 'Solyc06g031670.3' => 'sly', 'Solyc06g053810.3' => 'sly', 'Solyc07g025457.1' => 'sly', 'Solyc08g059740.1' => 'sly', 'Solyc08g059750.3' => 'sly', 'Solyc09g083370.3' => 'sly', 'Solyc12g038950.3' => 'sly', 'Sopen02g026630' => 'spe', 'Sopen06g018930' => 'spe', 'Sopen06g018940' => 'spe', 'Sopen08g009460' => 'spe', 'Sopen09g032290' => 'spe', 'Sp1g03080' => 'spa', 'Sp1g03090' => 'spa', 'Sp1g05480' => 'spa', 'Sp2g07860' => 'spa', 'Sp2g08430' => 'spa', 'Sp2g08440' => 'spa', 'Sp2g26200' => 'spa', 'Sp4g13170' => 'spa', 'Sp6g33840' => 'spa', 'SpUn1204_0010' => 'spa', 'TAR365G0908' => 'tar', 'TAR381G1270' => 'tar', 'TAR381G1651' => 'tar', 'TAR625G1131' => 'tar', 'TAR633G0962' => 'tar', 'TAR633G1729' => 'tar', 'TAR633G1864' => 'tar', 'TAR636G0221' => 'tar', 'TAR636G0314' => 'tar', 'TAR636G3202' => 'tar', 'THA.LOC104800805' => 'tha', 'THA.LOC104801096' => 'tha', 'THA.LOC104801555' => 'tha', 'THA.LOC104808491' => 'tha', 'THA.LOC104808595' => 'tha', 'THA.LOC104815985' => 'tha', 'THA.LOC104822250' => 'tha', 'THA.LOC104826071' => 'tha', 'Thecc.01G265200' => 'tca', 'Thecc.01G265300' => 'tca', 'Thecc.01G265700' => 'tca', 'Thecc.03G109100' => 'tca', 'Thecc.04G245900' => 'tca', 'Thecc.04G246000' => 'tca', 'Thhalv10003334m.g' => 'esa', 'Thhalv10005508m.g' => 'esa', 'Thhalv10005643m.g' => 'esa', 'Thhalv10007316m.g' => 'esa', 'Thhalv10009006m.g' => 'esa', 'Thhalv10009309m.g' => 'esa', 'Thhalv10014917m.g' => 'esa', 'Thhalv10014919m.g' => 'esa', 'Thhalv10015393m.g' => 'esa', 'Thhalv10016515m.g' => 'esa', 'Thhalv10029242m.g' => 'esa', 'TPR.G16654' => 'tpr', 'TPR.G20589' => 'tpr', 'TPR.G23029' => 'tpr', 'TPR.G27731' => 'tpr', 'TPR.G28889' => 'tpr', 'TPR.G28899' => 'tpr', 'TPR.G30846' => 'tpr', 'TPR.G5452' => 'tpr', 'TPR.G5713' => 'tpr', 'TPR.G9046' => 'tpr', 'TPR.G9061' => 'tpr', 'TWI09G1075' => 'twi', 'TWI12G0806' => 'twi', 'TWI18G0108' => 'twi', 'TWI53G1361' => 'twi', 'TWI73G0185' => 'twi', 'TWI73G0427' => 'twi', 'unitig_37.g12001' => 'ugi', 'unitig_747.g21660' => 'ugi', 'unitig_748.g7232' => 'ugi', 'unitig_748.g7315' => 'ugi', 'unitig_85.g27262' => 'ugi', 'unitig_92.g28220' => 'ugi', 'vmacro02632' => 'vma', 'vmacro08410' => 'vma', 'vmacro08411' => 'vma', 'vmacro15407' => 'vma', 'VMungo0251G3619' => 'vmu', 'VMungo0720G1204' => 'vmu', 'VMungo0720G1918' => 'vmu', 'VMungo0720G2387' => 'vmu', 'VMungo0720G2961' => 'vmu', 'VMungo1215G2154' => 'vmu', 'VMungo1383G2411' => 'vmu', 'Zm00001eb051130' => 'zma', 'Zm00001eb116830' => 'zma', 'Zm00001eb116850' => 'zma', 'Zm00001eb151740' => 'zma', 'Zm00001eb292360' => 'zma', 'Zm00001eb301640' => 'zma' ) $gf_id = 'HOM05D000856' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000856' ) $data_identifier = 'HOM05D000856' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 13, 'ath' => (int) 10, 'atr' => (int) 1, 'acertr' => (int) 8, 'cqu' => (int) 6, 'bca' => (int) 21, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 11, 'car' => (int) 9, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 8, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 5, 'fan' => (int) 16, 'fve' => (int) 6, 'gma' => (int) 11, 'ghi' => (int) 19, 'gra' => (int) 9, 'vvi' => (int) 7, 'han' => (int) 17, 'cav' => (int) 5, 'hma' => (int) 2, 'vpl' => (int) 2, 'sun' => (int) 7, 'lal' => (int) 9, 'lja' => (int) 5, 'lonja' => (int) 9, 'lsa' => (int) 5, 'mes' => (int) 8, 'mpo' => (int) 3, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 10, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 15, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 9, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 9, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 6, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 5, 'spa' => (int) 10, 'tar' => (int) 10, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 11, 'tpr' => (int) 11, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 4, 'vmu' => (int) 7, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb301640' $species_info = array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ) $local_species = 'can' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000856', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p00010' => 'bna', 'A03p04160' => 'bna', 'A03p17160' => 'bna', 'A04p23370' => 'bna', 'A05p14860' => 'bna', 'A08p37020' => 'bna', 'A09p08050' => 'bna', 'A09p66800' => 'bna', 'A09p67940' => 'bna', 'A10p02680' => 'bna', 'A10p05320' => 'bna', 'Aa31LG1G20560' => 'aar', 'Aa31LG1G20610' => 'aar', 'Aa31LG1G7810' => 'aar', 'Aa31LG5G3590' => 'aar', 'Aa31LG5G6140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3819' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4683' => 'aag', 'Actinidia04480' => 'ach', 'Actinidia05466' => 'ach', 'Actinidia08445' => 'ach', 'Actinidia21170' => 'ach', 'Actinidia24812' => 'ach', 'Actinidia24951' => 'ach', 'Actinidia40088' => 'ach', 'Ah.02g111660' => 'amhyb', 'Ah.11g048900' => 'amhyb', 'Ah.11g049910' => 'amhyb', 'AL1G13870' => 'aly', 'AL1G13880' => 'aly', 'AL1G16760' => 'aly', 'AL390U10020' => 'aly', 'AL4G25520' => 'aly', 'AL6G19890' => 'aly', 'AL6G19900' => 'aly', 'AL6G19910' => 'aly', 'AL8G40100' => 'aly', 'Aqoxy2G03562' => 'aox', 'Aqoxy5G00316' => 'aox', 'Aqoxy5G00926' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1628KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1H403S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2FU6SJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.882I6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8YRY2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YN1SN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AF70II' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZA8L1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F916KL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHRD8H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KTZ8QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S22EMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8M29T' => 'arhy', 'AT1G04270' => 'ath', 'AT1G04280' => 'ath', 'AT1G06750' => 'ath', 'AT1G33850' => 'ath', 'AT2G30630' => 'ath', 'AT5G09490' => 'ath', 'AT5G09500' => 'ath', 'AT5G09510' => 'ath', 'AT5G43640' => 'ath', 'AT5G63070' => 'ath', 'ATR0605G315' => 'atr', 'Atru.chr11.175' => 'acertr', 'Atru.chr11.653' => 'acertr', 'Atru.chr3.1616' => 'acertr', 'Atru.chr4.2230' => 'acertr', 'Atru.chr4.2232' => 'acertr', 'Atru.chr5.1598' => 'acertr', 'Atru.chr5.1600' => 'acertr', 'Atru.chr5.2188' => 'acertr', 'AUR62008326' => 'cqu', 'AUR62011922' => 'cqu', 'AUR62011924' => 'cqu', 'AUR62021771' => 'cqu', 'AUR62032237' => 'cqu', 'AUR62032240' => 'cqu', 'BcaB01g05572' => 'bca', 'BcaB02g10337' => 'bca', 'BcaB04g19944' => 'bca', 'BcaB05g21548' => 'bca', 'BcaB05g21549' => 'bca', 'BcaB05g23227' => 'bca', 'BcaB06g26256' => 'bca', 'BcaB06g26257' => 'bca', 'BcaB06g28379' => 'bca', 'BcaC02g11159' => 'bca', 'BcaC03g13258' => 'bca', 'BcaC03g13259' => 'bca', 'BcaC05g24456' => 'bca', 'BcaC05g24457' => 'bca', 'BcaC07g36922' => 'bca', 'BcaC07g36923' => 'bca', 'BcaC07g42050' => 'bca', 'BcaC07g42176' => 'bca', 'BcaC07g42195' => 'bca', 'BcaC07g42196' => 'bca', 'BcaNung06674' => 'bca', 'BolC2t06351H' => 'bol', 'BolC2t06352H' => 'bol', 'BolC3t12993H' => 'bol', 'BolC4t23525H' => 'bol', 'BolC4t27475H' => 'bol', 'BolC5t29025H' => 'bol', 'BolC5t29026H' => 'bol', 'BolC8t46898H' => 'bol', 'BolC8t46899H' => 'bol', 'BolC8t52630H' => 'bol', 'BolC8t52765H' => 'bol', 'BolC9t53824H' => 'bol', 'BraA03t09760Z' => 'bra', 'BraA03t10990Z' => 'bra', 'BraA05t20413Z' => 'bra', 'BraA08t35602Z' => 'bra', 'BraA09t36458Z' => 'bra', 'BraA09t42018Z' => 'bra', 'BraA09t42129Z' => 'bra', 'BraA10t42536Z' => 'bra', 'BraA10t42537Z' => 'bra', 'C01p10690' => 'bna', 'C02p03890' => 'bna', 'C02p03900' => 'bna', 'C03p04620' => 'bna', 'C04p19870' => 'bna', 'C04p59670' => 'bna', 'C05p02460' => 'bna', 'C05p02470' => 'bna', 'C08p00980' => 'bna', 'C08p00990' => 'bna', 'C08p51030' => 'bna', 'C08p52360' => 'bna', 'C09p09120' => 'bna', 'CAN.G19.15' => 'can', 'CAN.G251.10' => 'can', 'CAN.G251.9' => 'can', 'CAN.G398.24' => 'can', 'CAN.G410.32' => 'can', 'CAN.G881.2' => 'can', 'CANSAT01G3025' => 'cansat', 'CANSAT78G1211' => 'cansat', 'CANSAT78G1218' => 'cansat', 'CANSAT78G1521' => 'cansat', 'CANSAT78G1670' => 'cansat', 'CARHR003600' => 'chi', 'CARHR003610' => 'chi', 'CARHR006290' => 'chi', 'CARHR006430' => 'chi', 'CARHR124110' => 'chi', 'CARHR203870' => 'chi', 'CARHR203880' => 'chi', 'CARHR203890' => 'chi', 'CARHR276880' => 'chi', 'Carub.0001s0346' => 'cru', 'Carub.0001s0347' => 'cru', 'Carub.0001s0607' => 'cru', 'Carub.0003s2768' => 'cru', 'Carub.0003s2769' => 'cru', 'Carub.0004s1178' => 'cru', 'Carub.0006s0806' => 'cru', 'Carub.0006s0807' => 'cru', 'Carub.0006s0808' => 'cru', 'Carub.0008s0501' => 'cru', 'Carub.0008s2379' => 'cru', 'Ca_08655_v3' => 'car', 'Ca_08922_v3' => 'car', 'Ca_08923_v3' => 'car', 'Ca_09119_v3' => 'car', 'Ca_09703_v3' => 'car', 'Ca_09705_v3' => 'car', 'Ca_09835_v3' => 'car', 'Ca_26403_v3' => 'car', 'Ca_30719_v3' => 'car', 'CBR_g17958' => 'cbr', 'CBR_g40516' => 'cbr', 'Cc00_g05350' => 'ccan', 'Cc01_g18690' => 'ccan', 'Cc03_g04830' => 'ccan', 'Cc03_g04850' => 'ccan', 'CDE02G4469' => 'cde', 'CDE06G0883' => 'cde', 'CDE06G1295' => 'cde', 'CDE06G1390' => 'cde', 'CDE07G0584' => 'cde', 'CDE07G1084' => 'cde', 'CDE08G1259' => 'cde', 'Cfa002341' => 'cfa', 'Cfa024337' => 'cfa', 'Ciclev10004749m.g' => 'ccl', 'Ciclev10006127m.g' => 'ccl', 'Ciclev10019720m.g' => 'ccl', 'Ciclev10022652m.g' => 'ccl', 'CiPaw.01G190400' => 'cil', 'CiPaw.01G190500' => 'cil', 'CiPaw.02G116400' => 'cil', 'CiPaw.02G116500' => 'cil', 'CiPaw.04G183000' => 'cil', 'CiPaw.04G183300' => 'cil', 'ClCG05G004610' => 'cla', 'ClCG05G004620' => 'cla', 'ClCG06G006730' => 'cla', 'ClCG06G006740' => 'cla', 'ClCG11G003690' => 'cla', 'COL.COLO4_08276' => 'col', 'COL.COLO4_08277' => 'col', 'COL.COLO4_15787' => 'col', 'COL.COLO4_15789' => 'col', 'Cpa.g.c44815' => 'cpa', 'Cpa.g.sc52.144' => 'cpa', 'Cpa.g.sc58.46' => 'cpa', 'Cpa.g.sc58.47' => 'cpa', 'Cre08.g360900' => 'cre', 'CsaV3_2G013030' => 'csa', 'CsaV3_2G013050' => 'csa', 'CsaV3_2G015620' => 'csa', 'CsaV3_3G012590' => 'csa', 'CsaV3_3G012600' => 'csa', 'CSS0001641' => 'camsi', 'CSS0008310' => 'camsi', 'CSS0013011' => 'camsi', 'CSS0017147' => 'camsi', 'CSS0022970' => 'camsi', 'CSS0025655' => 'camsi', 'CSS0028665' => 'camsi', 'CSS0029117' => 'camsi', 'CSS0032024' => 'camsi', 'CSS0039681' => 'camsi', 'CSS0046516' => 'camsi', 'CSS0050307' => 'camsi', 'DCAR_005871' => 'dca', 'DCAR_007342' => 'dca', 'DCAR_024228' => 'dca', 'DCAR_027277' => 'dca', 'DCAR_030718' => 'dca', 'Dinv20287' => 'din', 'Dinv22461' => 'din', 'Dinv22464' => 'din', 'Dinv29912' => 'din', 'Dinv29913' => 'din', 'Dinv34580' => 'din', 'Dinv34582' => 'din', 'Dinv44632' => 'din', 'Duzib052G0266' => 'dzi', 'Duzib133G0907' => 'dzi', 'Duzib133G1034' => 'dzi', 'Duzib138G0207' => 'dzi', 'Duzib138G0491' => 'dzi', 'Duzib151G0812' => 'dzi', 'Duzib151G1166' => 'dzi', 'Duzib168G0192' => 'dzi', 'Duzib211G0077' => 'dzi', 'Duzib212G0429' => 'dzi', 'Duzib212G0472' => 'dzi', 'ECA233G2617' => 'eca', 'ECA236G4188' => 'eca', 'ECA240G0936' => 'eca', 'ECA240G1129' => 'eca', 'ECA247G0623' => 'eca', 'EL10Ac5g10451' => 'bvu', 'EL10Ac5g10453' => 'bvu', 'EL10Ac5g10894' => 'bvu', 'Eucgr.H00192' => 'egr', 'Eucgr.H00193' => 'egr', 'Eucgr.H00194' => 'egr', 'Eucgr.J01562' => 'egr', 'Eucgr.K03301' => 'egr', 'FAN02G0632' => 'fan', 'FAN05G5378' => 'fan', 'FAN09G3247' => 'fan', 'FAN12G0435' => 'fan', 'FAN12G2426' => 'fan', 'FAN14G1707' => 'fan', 'FAN14G4725' => 'fan', 'FAN15G2071' => 'fan', 'FAN17G3065' => 'fan', 'FAN19G1376' => 'fan', 'FAN20G0354' => 'fan', 'FAN20G2429' => 'fan', 'FAN20G2658' => 'fan', 'FAN24G2343' => 'fan', 'FAN27G2362' => 'fan', 'FAN28G1765' => 'fan', 'FvH4_1g16020' => 'fve', 'FvH4_2g04890' => 'fve', 'FvH4_2g22270' => 'fve', 'FvH4_4g02630' => 'fve', 'FvH4_4g02640' => 'fve', 'FvH4_6g02650' => 'fve', 'Glyma.02G140600' => 'gma', 'Glyma.03G159900' => 'gma', 'Glyma.05G234800' => 'gma', 'Glyma.07G269600' => 'gma', 'Glyma.08G042300' => 'gma', 'Glyma.10G033500' => 'gma', 'Glyma.10G185200' => 'gma', 'Glyma.17G004300' => 'gma', 'Glyma.19G161900' => 'gma', 'Glyma.20G205100' => 'gma', 'Glyma.20G205200' => 'gma', 'Gohir.A01G139101' => 'ghi', 'Gohir.A02G035600' => 'ghi', 'Gohir.A02G117901' => 'ghi', 'Gohir.A07G210100' => 'ghi', 'Gohir.A07G210200' => 'ghi', 'Gohir.A08G061100' => 'ghi', 'Gohir.A09G223000' => 'ghi', 'Gohir.A09G223100' => 'ghi', 'Gohir.A10G113900' => 'ghi', 'Gohir.A10G114000' => 'ghi', 'Gohir.D02G042300' => 'ghi', 'Gohir.D07G216100' => 'ghi', 'Gohir.D07G216200' => 'ghi', 'Gohir.D08G070400' => 'ghi', 'Gohir.D09G225000' => 'ghi', 'Gohir.D09G225100' => 'ghi', 'Gohir.D10G152300' => 'ghi', 'Gohir.D10G153200' => 'ghi', 'Gohir.D11G133701' => 'ghi', 'Gorai.004G074100' => 'gra', 'Gorai.005G046800' => 'gra', 'Gorai.006G246500' => 'gra', 'Gorai.006G246600' => 'gra', 'Gorai.007G142900' => 'gra', 'Gorai.011G171000' => 'gra', 'Gorai.011G171100' => 'gra', 'Gorai.013G104300' => 'gra', 'Gorai.013G104400' => 'gra', 'GSVIVG01000754001' => 'vvi', 'GSVIVG01000756001' => 'vvi', 'GSVIVG01010903001' => 'vvi', 'GSVIVG01017623001' => 'vvi', 'GSVIVG01018113001' => 'vvi', 'GSVIVG01018116001' => 'vvi', 'GSVIVG01018118001' => 'vvi', 'HanXRQChr03g0076211' => 'han', 'HanXRQChr03g0092431' => 'han', 'HanXRQChr03g0092441' => 'han', 'HanXRQChr03g0092591' => 'han', 'HanXRQChr03g0092671' => 'han', 'HanXRQChr03g0092681' => 'han', 'HanXRQChr03g0092691' => 'han', 'HanXRQChr03g0092701' => 'han', 'HanXRQChr03g0092721' => 'han', 'HanXRQChr03g0092731' => 'han', 'HanXRQChr04g0113681' => 'han', 'HanXRQChr10g0281371' => 'han', 'HanXRQChr11g0337141' => 'han', 'HanXRQChr13g0424521' => 'han', 'HanXRQChr13g0424531' => 'han', 'HanXRQChr13g0424541' => 'han', 'HanXRQChr16g0498221' => 'han', 'Haze_04377' => 'cav', 'Haze_11298' => 'cav', 'Haze_24547' => 'cav', 'Haze_24550' => 'cav', 'Haze_26587' => 'cav', 'Hma1.2p1_0650F.1_g195410' => 'hma', 'Hma1.2p1_0893F.1_g233470' => 'hma', 'HPP92_006508' => 'vpl', 'HPP92_024780' => 'vpl', 'Hund02688' => 'sun', 'Hund09380' => 'sun', 'Hund09381' => 'sun', 'Hund09832' => 'sun', 'Hund09833' => 'sun', 'Hund11351' => 'sun', 'Hund11513' => 'sun', 'Lalb_Chr06g0162591' => 'lal', 'Lalb_Chr06g0162601' => 'lal', 'Lalb_Chr06g0169321' => 'lal', 'Lalb_Chr09g0330951' => 'lal', 'Lalb_Chr16g0387631' => 'lal', 'Lalb_Chr21g0306241' => 'lal', 'Lalb_Chr25g0290051' => 'lal', 'Lalb_Chr25g0290061' => 'lal', 'Lalb_Chr25g0290071' => 'lal', 'Lj1g0003876' => 'lja', 'Lj1P1207T36' => 'lonja', 'Lj2C1156G12' => 'lonja', 'Lj3A793G39' => 'lonja', 'Lj3C580G2' => 'lonja', 'Lj3C780G2' => 'lonja', 'Lj3C780T4' => 'lonja', 'Lj3C793G9' => 'lonja', 'Lj4g0012960' => 'lja', 'Lj5g0021252' => 'lja', 'Lj5g0021484' => 'lja', 'Lj5g0024528' => 'lja', 'Lj6A399T12' => 'lonja', 'Lj6A656G65' => 'lonja', 'Lsat_1_v5_gn_3_125500' => 'lsa', 'Lsat_1_v5_gn_3_125540' => 'lsa', 'Lsat_1_v5_gn_5_72701' => 'lsa', 'Lsat_1_v5_gn_8_91560' => 'lsa', 'Lsat_1_v5_gn_9_9640' => 'lsa', 'Manes.01G200600' => 'mes', 'Manes.01G200700' => 'mes', 'Manes.03G168900' => 'mes', 'Manes.03G169000' => 'mes', 'Manes.05G085801' => 'mes', 'Manes.05G086200' => 'mes', 'Manes.15G036700' => 'mes', 'Manes.15G036900' => 'mes', 'Mapoly0004s0172' => 'mpo', 'Mapoly0023s0001' => 'mpo', 'Mapoly0142s0012' => 'mpo', 'MBI01_g32854_MAGBIO' => 'mbi', 'MBI11_g24427_MAGBIO' => 'mbi', 'MBI11_g47319_MAGBIO' => 'mbi', 'MCO01G433' => 'mco', 'MD00G1187800' => 'mdo', 'MD04G1226500' => 'mdo', 'MD05G1203900' => 'mdo', 'MD10G1191100' => 'mdo', 'MD12G1243500' => 'mdo', 'MD13G1207000' => 'mdo', 'MD13G1207100' => 'mdo', 'MD16G1208600' => 'mdo', 'Medtr1g050352' => 'mtr', 'Medtr1g070385' => 'mtr', 'Medtr1g070450' => 'mtr', 'Medtr1g075200' => 'mtr', 'Medtr1g075250' => 'mtr', 'Medtr1g075260' => 'mtr', 'Medtr1g475250' => 'mtr', 'Medtr4g075450' => 'mtr', 'Medtr7g096300' => 'mtr', 'Medtr8g105110' => 'mtr', 'MELO3C006470.2' => 'cme', 'MELO3C006471.2' => 'cme', 'MELO3C020772.2' => 'cme', 'MELO3C026780.2' => 'cme', 'MELO3C026781.2' => 'cme', 'Migut.D00390' => 'egut', 'Migut.G00435' => 'egut', 'Migut.G00436' => 'egut', 'Migut.G00718' => 'egut', 'MSTRG.21891' => 'ama', 'MSTRG.26910' => 'ama', 'MSTRG.4099' => 'ama', 'MSTRG.9925' => 'ama', 'Nitab4.5_0000165g0010' => 'nta', 'Nitab4.5_0000209g0180' => 'nta', 'Nitab4.5_0000244g0440' => 'nta', 'Nitab4.5_0000525g0220' => 'nta', 'Nitab4.5_0001597g0020' => 'nta', 'Nitab4.5_0001878g0040' => 'nta', 'Nitab4.5_0001878g0060' => 'nta', 'Nitab4.5_0002838g0100' => 'nta', 'Nitab4.5_0002838g0120' => 'nta', 'Nitab4.5_0004798g0030' => 'nta', 'Nitab4.5_0005420g0010' => 'nta', 'Nitab4.5_0005507g0010' => 'nta', 'Nitab4.5_0005574g0020' => 'nta', 'Nitab4.5_0005838g0010' => 'nta', 'Nitab4.5_0010580g0020' => 'nta', 'Nn1g02599' => 'nnu', 'Nn1g02608' => 'nnu', 'Nn3g17742' => 'nnu', 'Nn3g19534' => 'nnu', 'Nn3g19535' => 'nnu', 'Oeu008790.1' => 'oeu', 'Oeu008792.1' => 'oeu', 'Oeu032590.1' => 'oeu', 'Oeu035349.1' => 'oeu', 'Oeu049791.1' => 'oeu', 'Os01g0774500' => 'osa', 'Os03g0628800' => 'osa', 'Os03g0798600' => 'osa', 'Os05g0508800' => 'osa', 'Peaxi162Scf00036g02018' => 'pax', 'Peaxi162Scf00578g00032' => 'pax', 'Peaxi162Scf00578g00317' => 'pax', 'Peaxi162Scf00785g00114' => 'pax', 'Peaxi162Scf00813g00119' => 'pax', 'Peaxi162Scf00906g00227' => 'pax', 'PGR004G0875' => 'pgr', 'PGR004G2424' => 'pgr', 'PGR031G1239' => 'pgr', 'PGR031G2474' => 'pgr', 'PGR044G0423' => 'pgr', 'PGSC0003DMG400001128' => 'stu', 'PGSC0003DMG400007336' => 'stu', 'PGSC0003DMG400016318' => 'stu', 'PGSC0003DMG400016319' => 'stu', 'PGSC0003DMG400018074' => 'stu', 'Phvul.001G157700' => 'pvu', 'Phvul.002G148550' => 'pvu', 'Phvul.002G320200' => 'pvu', 'Phvul.003G089200' => 'pvu', 'Phvul.007G126000' => 'pvu', 'Phvul.007G126100' => 'pvu', 'Phvul.007G178000' => 'pvu', 'Phvul.007G178200' => 'pvu', 'Potri.002G043000' => 'ptr', 'Potri.002G043200' => 'ptr', 'Potri.003G123750' => 'ptr', 'Potri.005G055401' => 'ptr', 'Potri.005G219700' => 'ptr', 'Potri.005G220000' => 'ptr', 'Potri.008G161901' => 'ptr', 'Potri.008G162000' => 'ptr', 'Potri.008G162400' => 'ptr', 'Potri.010G076900' => 'ptr', 'Pp3c12_9180' => 'ppa', 'Pp3c13_19770' => 'ppa', 'Pp3c14_22950' => 'ppa', 'Pp3c16_12160' => 'ppa', 'Pp3c27_7820' => 'ppa', 'Pp3c2_3490' => 'ppa', 'Pp3c3_23700' => 'ppa', 'Pp3c3_36520' => 'ppa', 'Pp3c4_15250' => 'ppa', 'PRCOL_00007002' => 'pco', 'Prupe.1G030600' => 'ppe', 'Prupe.1G030700' => 'ppe', 'Prupe.6G345200' => 'ppe', 'Prupe.8G230300' => 'ppe', 'Prupe.8G230500' => 'ppe', 'Psat3g059600' => 'psa', 'Psat5g200920' => 'psa', 'Psat6g056440' => 'psa', 'Psat6g057360' => 'psa', 'Psat6g134120' => 'psa', 'Psat6g134160' => 'psa', 'Psat7g008640' => 'psa', 'Psat7g185240' => 'psa', 'PSO017G1330' => 'pso', 'PSO063G6097' => 'pso', 'PSO170G0835' => 'pso', 'PSO170G2499' => 'pso', 'PSO210G5058' => 'pso', 'PSO210G6154' => 'pso', 'PSO585G0031' => 'pso', 'PSO832G0264' => 'pso', 'PSO832G4288' => 'pso', 'QL03p027355' => 'qlo', 'QL03p027430' => 'qlo', 'QL04p081380' => 'qlo', 'QL06p015642' => 'qlo', 'QL06p015650' => 'qlo', 'QL06p015686' => 'qlo', 'QL12p042927' => 'qlo', 'QL93p1863_0035' => 'qlo', 'RcHm_v2.0_Chr3g0450581' => 'rch', 'RcHm_v2.0_Chr4g0390371' => 'rch', 'RcHm_v2.0_Chr4g0390381' => 'rch', 'RcHm_v2.0_Chr4g0390491' => 'rch', 'RcHm_v2.0_Chr4g0390501' => 'rch', 'RcHm_v2.0_Chr6g0289231' => 'rch', 'Rhsim04G0190400' => 'rsi', 'Rhsim04G0190500' => 'rsi', 'Rhsim04G0190600' => 'rsi', 'Rhsim13G0031400' => 'rsi', 'Rhsim13G0165600' => 'rsi', 'RhsimUnG0114600' => 'rsi', 'RhsimUnG0114700' => 'rsi', 'Sabra02G0034800' => 'sbr', 'Sabra02G0035100' => 'sbr', 'Sabra05G0168600' => 'sbr', 'Sabra05G0168800' => 'sbr', 'Sabra08G0123700' => 'sbr', 'Sabra10G0031900' => 'sbr', 'Sabra13G0039000' => 'sbr', 'SalBow2G0782' => 'sbo', 'SalBow2G1403' => 'sbo', 'SalBow4G0074' => 'sbo', 'SalBow4G2635' => 'sbo', 'SalBow5G3010' => 'sbo', 'Sc05g0000870' => 'sci', 'Sc05g0000890' => 'sci', 'Sc13g0005000' => 'sci', 'Sc13g0005030' => 'sci', 'Sc19g0003790' => 'sci', 'Sc19g0003800' => 'sci', 'Sed0003467' => 'sed', 'Sed0009355' => 'sed', 'Sed0009894' => 'sed', 'Sed0011972' => 'sed', 'Sed0021483' => 'sed', 'Sed0021750' => 'sed', 'Sed0026279' => 'sed', 'SEGI_05312' => 'sgi', 'SEGI_10112' => 'sgi', 'SEGI_15835' => 'sgi', 'SEGI_30386' => 'sgi', 'SEGI_34122' => 'sgi', 'SEGI_35063' => 'sgi', 'SGA_v2.0_scaffold101G29794' => 'sas', 'SGA_v2.0_scaffold1G00573' => 'sas', 'SGA_v2.0_scaffold79G25637' => 'sas', 'SGA_v2.0_scaffold88G27283' => 'sas', 'SGA_v2.0_scaffold88G27285' => 'sas', 'SGA_v2.0_scaffold88G27331' => 'sas', 'SHI09937' => 'shi', 'SMO119G0302' => 'smo', 'SMO137G0231' => 'smo', 'SMO367G1151' => 'smo', 'Solyc02g082000.3' => 'sly', 'Solyc06g031670.3' => 'sly', 'Solyc06g053810.3' => 'sly', 'Solyc07g025457.1' => 'sly', 'Solyc08g059740.1' => 'sly', 'Solyc08g059750.3' => 'sly', 'Solyc09g083370.3' => 'sly', 'Solyc12g038950.3' => 'sly', 'Sopen02g026630' => 'spe', 'Sopen06g018930' => 'spe', 'Sopen06g018940' => 'spe', 'Sopen08g009460' => 'spe', 'Sopen09g032290' => 'spe', 'Sp1g03080' => 'spa', 'Sp1g03090' => 'spa', 'Sp1g05480' => 'spa', 'Sp2g07860' => 'spa', 'Sp2g08430' => 'spa', 'Sp2g08440' => 'spa', 'Sp2g26200' => 'spa', 'Sp4g13170' => 'spa', 'Sp6g33840' => 'spa', 'SpUn1204_0010' => 'spa', 'TAR365G0908' => 'tar', 'TAR381G1270' => 'tar', 'TAR381G1651' => 'tar', 'TAR625G1131' => 'tar', 'TAR633G0962' => 'tar', 'TAR633G1729' => 'tar', 'TAR633G1864' => 'tar', 'TAR636G0221' => 'tar', 'TAR636G0314' => 'tar', 'TAR636G3202' => 'tar', 'THA.LOC104800805' => 'tha', 'THA.LOC104801096' => 'tha', 'THA.LOC104801555' => 'tha', 'THA.LOC104808491' => 'tha', 'THA.LOC104808595' => 'tha', 'THA.LOC104815985' => 'tha', 'THA.LOC104822250' => 'tha', 'THA.LOC104826071' => 'tha', 'Thecc.01G265200' => 'tca', 'Thecc.01G265300' => 'tca', 'Thecc.01G265700' => 'tca', 'Thecc.03G109100' => 'tca', 'Thecc.04G245900' => 'tca', 'Thecc.04G246000' => 'tca', 'Thhalv10003334m.g' => 'esa', 'Thhalv10005508m.g' => 'esa', 'Thhalv10005643m.g' => 'esa', 'Thhalv10007316m.g' => 'esa', 'Thhalv10009006m.g' => 'esa', 'Thhalv10009309m.g' => 'esa', 'Thhalv10014917m.g' => 'esa', 'Thhalv10014919m.g' => 'esa', 'Thhalv10015393m.g' => 'esa', 'Thhalv10016515m.g' => 'esa', 'Thhalv10029242m.g' => 'esa', 'TPR.G16654' => 'tpr', 'TPR.G20589' => 'tpr', 'TPR.G23029' => 'tpr', 'TPR.G27731' => 'tpr', 'TPR.G28889' => 'tpr', 'TPR.G28899' => 'tpr', 'TPR.G30846' => 'tpr', 'TPR.G5452' => 'tpr', 'TPR.G5713' => 'tpr', 'TPR.G9046' => 'tpr', 'TPR.G9061' => 'tpr', 'TWI09G1075' => 'twi', 'TWI12G0806' => 'twi', 'TWI18G0108' => 'twi', 'TWI53G1361' => 'twi', 'TWI73G0185' => 'twi', 'TWI73G0427' => 'twi', 'unitig_37.g12001' => 'ugi', 'unitig_747.g21660' => 'ugi', 'unitig_748.g7232' => 'ugi', 'unitig_748.g7315' => 'ugi', 'unitig_85.g27262' => 'ugi', 'unitig_92.g28220' => 'ugi', 'vmacro02632' => 'vma', 'vmacro08410' => 'vma', 'vmacro08411' => 'vma', 'vmacro15407' => 'vma', 'VMungo0251G3619' => 'vmu', 'VMungo0720G1204' => 'vmu', 'VMungo0720G1918' => 'vmu', 'VMungo0720G2387' => 'vmu', 'VMungo0720G2961' => 'vmu', 'VMungo1215G2154' => 'vmu', 'VMungo1383G2411' => 'vmu', 'Zm00001eb051130' => 'zma', 'Zm00001eb116830' => 'zma', 'Zm00001eb116850' => 'zma', 'Zm00001eb151740' => 'zma', 'Zm00001eb292360' => 'zma', 'Zm00001eb301640' => 'zma' ), 'gf_id' => 'HOM05D000856', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000856' ), 'data_identifier' => 'HOM05D000856', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000856', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p00010' => 'bna', 'A03p04160' => 'bna', 'A03p17160' => 'bna', 'A04p23370' => 'bna', 'A05p14860' => 'bna', 'A08p37020' => 'bna', 'A09p08050' => 'bna', 'A09p66800' => 'bna', 'A09p67940' => 'bna', 'A10p02680' => 'bna', 'A10p05320' => 'bna', 'Aa31LG1G20560' => 'aar', 'Aa31LG1G20610' => 'aar', 'Aa31LG1G7810' => 'aar', 'Aa31LG5G3590' => 'aar', 'Aa31LG5G6140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3819' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4683' => 'aag', 'Actinidia04480' => 'ach', 'Actinidia05466' => 'ach', 'Actinidia08445' => 'ach', 'Actinidia21170' => 'ach', 'Actinidia24812' => 'ach', 'Actinidia24951' => 'ach', 'Actinidia40088' => 'ach', 'Ah.02g111660' => 'amhyb', 'Ah.11g048900' => 'amhyb', 'Ah.11g049910' => 'amhyb', 'AL1G13870' => 'aly', 'AL1G13880' => 'aly', 'AL1G16760' => 'aly', 'AL390U10020' => 'aly', 'AL4G25520' => 'aly', 'AL6G19890' => 'aly', 'AL6G19900' => 'aly', 'AL6G19910' => 'aly', 'AL8G40100' => 'aly', 'Aqoxy2G03562' => 'aox', 'Aqoxy5G00316' => 'aox', 'Aqoxy5G00926' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1628KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1H403S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2FU6SJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.882I6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8YRY2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YN1SN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AF70II' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZA8L1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F916KL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHRD8H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KTZ8QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S22EMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8M29T' => 'arhy', 'AT1G04270' => 'ath', 'AT1G04280' => 'ath', 'AT1G06750' => 'ath', 'AT1G33850' => 'ath', 'AT2G30630' => 'ath', 'AT5G09490' => 'ath', 'AT5G09500' => 'ath', 'AT5G09510' => 'ath', 'AT5G43640' => 'ath', 'AT5G63070' => 'ath', 'ATR0605G315' => 'atr', 'Atru.chr11.175' => 'acertr', 'Atru.chr11.653' => 'acertr', 'Atru.chr3.1616' => 'acertr', 'Atru.chr4.2230' => 'acertr', 'Atru.chr4.2232' => 'acertr', 'Atru.chr5.1598' => 'acertr', 'Atru.chr5.1600' => 'acertr', 'Atru.chr5.2188' => 'acertr', 'AUR62008326' => 'cqu', 'AUR62011922' => 'cqu', 'AUR62011924' => 'cqu', 'AUR62021771' => 'cqu', 'AUR62032237' => 'cqu', 'AUR62032240' => 'cqu', 'BcaB01g05572' => 'bca', 'BcaB02g10337' => 'bca', 'BcaB04g19944' => 'bca', 'BcaB05g21548' => 'bca', 'BcaB05g21549' => 'bca', 'BcaB05g23227' => 'bca', 'BcaB06g26256' => 'bca', 'BcaB06g26257' => 'bca', 'BcaB06g28379' => 'bca', 'BcaC02g11159' => 'bca', 'BcaC03g13258' => 'bca', 'BcaC03g13259' => 'bca', 'BcaC05g24456' => 'bca', 'BcaC05g24457' => 'bca', 'BcaC07g36922' => 'bca', 'BcaC07g36923' => 'bca', 'BcaC07g42050' => 'bca', 'BcaC07g42176' => 'bca', 'BcaC07g42195' => 'bca', 'BcaC07g42196' => 'bca', 'BcaNung06674' => 'bca', 'BolC2t06351H' => 'bol', 'BolC2t06352H' => 'bol', 'BolC3t12993H' => 'bol', 'BolC4t23525H' => 'bol', 'BolC4t27475H' => 'bol', 'BolC5t29025H' => 'bol', 'BolC5t29026H' => 'bol', 'BolC8t46898H' => 'bol', 'BolC8t46899H' => 'bol', 'BolC8t52630H' => 'bol', 'BolC8t52765H' => 'bol', 'BolC9t53824H' => 'bol', 'BraA03t09760Z' => 'bra', 'BraA03t10990Z' => 'bra', 'BraA05t20413Z' => 'bra', 'BraA08t35602Z' => 'bra', 'BraA09t36458Z' => 'bra', 'BraA09t42018Z' => 'bra', 'BraA09t42129Z' => 'bra', 'BraA10t42536Z' => 'bra', 'BraA10t42537Z' => 'bra', 'C01p10690' => 'bna', 'C02p03890' => 'bna', 'C02p03900' => 'bna', 'C03p04620' => 'bna', 'C04p19870' => 'bna', 'C04p59670' => 'bna', 'C05p02460' => 'bna', 'C05p02470' => 'bna', 'C08p00980' => 'bna', 'C08p00990' => 'bna', 'C08p51030' => 'bna', 'C08p52360' => 'bna', 'C09p09120' => 'bna', 'CAN.G19.15' => 'can', 'CAN.G251.10' => 'can', 'CAN.G251.9' => 'can', 'CAN.G398.24' => 'can', 'CAN.G410.32' => 'can', 'CAN.G881.2' => 'can', 'CANSAT01G3025' => 'cansat', 'CANSAT78G1211' => 'cansat', 'CANSAT78G1218' => 'cansat', 'CANSAT78G1521' => 'cansat', 'CANSAT78G1670' => 'cansat', 'CARHR003600' => 'chi', 'CARHR003610' => 'chi', 'CARHR006290' => 'chi', 'CARHR006430' => 'chi', 'CARHR124110' => 'chi', 'CARHR203870' => 'chi', 'CARHR203880' => 'chi', 'CARHR203890' => 'chi', 'CARHR276880' => 'chi', 'Carub.0001s0346' => 'cru', 'Carub.0001s0347' => 'cru', 'Carub.0001s0607' => 'cru', 'Carub.0003s2768' => 'cru', 'Carub.0003s2769' => 'cru', 'Carub.0004s1178' => 'cru', 'Carub.0006s0806' => 'cru', 'Carub.0006s0807' => 'cru', 'Carub.0006s0808' => 'cru', 'Carub.0008s0501' => 'cru', 'Carub.0008s2379' => 'cru', 'Ca_08655_v3' => 'car', 'Ca_08922_v3' => 'car', 'Ca_08923_v3' => 'car', 'Ca_09119_v3' => 'car', 'Ca_09703_v3' => 'car', 'Ca_09705_v3' => 'car', 'Ca_09835_v3' => 'car', 'Ca_26403_v3' => 'car', 'Ca_30719_v3' => 'car', 'CBR_g17958' => 'cbr', 'CBR_g40516' => 'cbr', 'Cc00_g05350' => 'ccan', 'Cc01_g18690' => 'ccan', 'Cc03_g04830' => 'ccan', 'Cc03_g04850' => 'ccan', 'CDE02G4469' => 'cde', 'CDE06G0883' => 'cde', 'CDE06G1295' => 'cde', 'CDE06G1390' => 'cde', 'CDE07G0584' => 'cde', 'CDE07G1084' => 'cde', 'CDE08G1259' => 'cde', 'Cfa002341' => 'cfa', 'Cfa024337' => 'cfa', 'Ciclev10004749m.g' => 'ccl', 'Ciclev10006127m.g' => 'ccl', 'Ciclev10019720m.g' => 'ccl', 'Ciclev10022652m.g' => 'ccl', 'CiPaw.01G190400' => 'cil', 'CiPaw.01G190500' => 'cil', 'CiPaw.02G116400' => 'cil', 'CiPaw.02G116500' => 'cil', 'CiPaw.04G183000' => 'cil', 'CiPaw.04G183300' => 'cil', 'ClCG05G004610' => 'cla', 'ClCG05G004620' => 'cla', 'ClCG06G006730' => 'cla', 'ClCG06G006740' => 'cla', 'ClCG11G003690' => 'cla', 'COL.COLO4_08276' => 'col', 'COL.COLO4_08277' => 'col', 'COL.COLO4_15787' => 'col', 'COL.COLO4_15789' => 'col', 'Cpa.g.c44815' => 'cpa', 'Cpa.g.sc52.144' => 'cpa', 'Cpa.g.sc58.46' => 'cpa', 'Cpa.g.sc58.47' => 'cpa', 'Cre08.g360900' => 'cre', 'CsaV3_2G013030' => 'csa', 'CsaV3_2G013050' => 'csa', 'CsaV3_2G015620' => 'csa', 'CsaV3_3G012590' => 'csa', 'CsaV3_3G012600' => 'csa', 'CSS0001641' => 'camsi', 'CSS0008310' => 'camsi', 'CSS0013011' => 'camsi', 'CSS0017147' => 'camsi', 'CSS0022970' => 'camsi', 'CSS0025655' => 'camsi', 'CSS0028665' => 'camsi', 'CSS0029117' => 'camsi', 'CSS0032024' => 'camsi', 'CSS0039681' => 'camsi', 'CSS0046516' => 'camsi', 'CSS0050307' => 'camsi', 'DCAR_005871' => 'dca', 'DCAR_007342' => 'dca', 'DCAR_024228' => 'dca', 'DCAR_027277' => 'dca', 'DCAR_030718' => 'dca', 'Dinv20287' => 'din', 'Dinv22461' => 'din', 'Dinv22464' => 'din', 'Dinv29912' => 'din', 'Dinv29913' => 'din', 'Dinv34580' => 'din', 'Dinv34582' => 'din', 'Dinv44632' => 'din', 'Duzib052G0266' => 'dzi', 'Duzib133G0907' => 'dzi', 'Duzib133G1034' => 'dzi', 'Duzib138G0207' => 'dzi', 'Duzib138G0491' => 'dzi', 'Duzib151G0812' => 'dzi', 'Duzib151G1166' => 'dzi', 'Duzib168G0192' => 'dzi', 'Duzib211G0077' => 'dzi', 'Duzib212G0429' => 'dzi', 'Duzib212G0472' => 'dzi', 'ECA233G2617' => 'eca', 'ECA236G4188' => 'eca', 'ECA240G0936' => 'eca', 'ECA240G1129' => 'eca', 'ECA247G0623' => 'eca', 'EL10Ac5g10451' => 'bvu', 'EL10Ac5g10453' => 'bvu', 'EL10Ac5g10894' => 'bvu', 'Eucgr.H00192' => 'egr', 'Eucgr.H00193' => 'egr', 'Eucgr.H00194' => 'egr', 'Eucgr.J01562' => 'egr', 'Eucgr.K03301' => 'egr', 'FAN02G0632' => 'fan', 'FAN05G5378' => 'fan', 'FAN09G3247' => 'fan', 'FAN12G0435' => 'fan', 'FAN12G2426' => 'fan', 'FAN14G1707' => 'fan', 'FAN14G4725' => 'fan', 'FAN15G2071' => 'fan', 'FAN17G3065' => 'fan', 'FAN19G1376' => 'fan', 'FAN20G0354' => 'fan', 'FAN20G2429' => 'fan', 'FAN20G2658' => 'fan', 'FAN24G2343' => 'fan', 'FAN27G2362' => 'fan', 'FAN28G1765' => 'fan', 'FvH4_1g16020' => 'fve', 'FvH4_2g04890' => 'fve', 'FvH4_2g22270' => 'fve', 'FvH4_4g02630' => 'fve', 'FvH4_4g02640' => 'fve', 'FvH4_6g02650' => 'fve', 'Glyma.02G140600' => 'gma', 'Glyma.03G159900' => 'gma', 'Glyma.05G234800' => 'gma', 'Glyma.07G269600' => 'gma', 'Glyma.08G042300' => 'gma', 'Glyma.10G033500' => 'gma', 'Glyma.10G185200' => 'gma', 'Glyma.17G004300' => 'gma', 'Glyma.19G161900' => 'gma', 'Glyma.20G205100' => 'gma', 'Glyma.20G205200' => 'gma', 'Gohir.A01G139101' => 'ghi', 'Gohir.A02G035600' => 'ghi', 'Gohir.A02G117901' => 'ghi', 'Gohir.A07G210100' => 'ghi', 'Gohir.A07G210200' => 'ghi', 'Gohir.A08G061100' => 'ghi', 'Gohir.A09G223000' => 'ghi', 'Gohir.A09G223100' => 'ghi', 'Gohir.A10G113900' => 'ghi', 'Gohir.A10G114000' => 'ghi', 'Gohir.D02G042300' => 'ghi', 'Gohir.D07G216100' => 'ghi', 'Gohir.D07G216200' => 'ghi', 'Gohir.D08G070400' => 'ghi', 'Gohir.D09G225000' => 'ghi', 'Gohir.D09G225100' => 'ghi', 'Gohir.D10G152300' => 'ghi', 'Gohir.D10G153200' => 'ghi', 'Gohir.D11G133701' => 'ghi', 'Gorai.004G074100' => 'gra', 'Gorai.005G046800' => 'gra', 'Gorai.006G246500' => 'gra', 'Gorai.006G246600' => 'gra', 'Gorai.007G142900' => 'gra', 'Gorai.011G171000' => 'gra', 'Gorai.011G171100' => 'gra', 'Gorai.013G104300' => 'gra', 'Gorai.013G104400' => 'gra', 'GSVIVG01000754001' => 'vvi', 'GSVIVG01000756001' => 'vvi', 'GSVIVG01010903001' => 'vvi', 'GSVIVG01017623001' => 'vvi', 'GSVIVG01018113001' => 'vvi', 'GSVIVG01018116001' => 'vvi', 'GSVIVG01018118001' => 'vvi', 'HanXRQChr03g0076211' => 'han', 'HanXRQChr03g0092431' => 'han', 'HanXRQChr03g0092441' => 'han', 'HanXRQChr03g0092591' => 'han', 'HanXRQChr03g0092671' => 'han', 'HanXRQChr03g0092681' => 'han', 'HanXRQChr03g0092691' => 'han', 'HanXRQChr03g0092701' => 'han', 'HanXRQChr03g0092721' => 'han', 'HanXRQChr03g0092731' => 'han', 'HanXRQChr04g0113681' => 'han', 'HanXRQChr10g0281371' => 'han', 'HanXRQChr11g0337141' => 'han', 'HanXRQChr13g0424521' => 'han', 'HanXRQChr13g0424531' => 'han', 'HanXRQChr13g0424541' => 'han', 'HanXRQChr16g0498221' => 'han', 'Haze_04377' => 'cav', 'Haze_11298' => 'cav', 'Haze_24547' => 'cav', 'Haze_24550' => 'cav', 'Haze_26587' => 'cav', 'Hma1.2p1_0650F.1_g195410' => 'hma', 'Hma1.2p1_0893F.1_g233470' => 'hma', 'HPP92_006508' => 'vpl', 'HPP92_024780' => 'vpl', 'Hund02688' => 'sun', 'Hund09380' => 'sun', 'Hund09381' => 'sun', 'Hund09832' => 'sun', 'Hund09833' => 'sun', 'Hund11351' => 'sun', 'Hund11513' => 'sun', 'Lalb_Chr06g0162591' => 'lal', 'Lalb_Chr06g0162601' => 'lal', 'Lalb_Chr06g0169321' => 'lal', 'Lalb_Chr09g0330951' => 'lal', 'Lalb_Chr16g0387631' => 'lal', 'Lalb_Chr21g0306241' => 'lal', 'Lalb_Chr25g0290051' => 'lal', 'Lalb_Chr25g0290061' => 'lal', 'Lalb_Chr25g0290071' => 'lal', 'Lj1g0003876' => 'lja', 'Lj1P1207T36' => 'lonja', 'Lj2C1156G12' => 'lonja', 'Lj3A793G39' => 'lonja', 'Lj3C580G2' => 'lonja', 'Lj3C780G2' => 'lonja', 'Lj3C780T4' => 'lonja', 'Lj3C793G9' => 'lonja', 'Lj4g0012960' => 'lja', 'Lj5g0021252' => 'lja', 'Lj5g0021484' => 'lja', 'Lj5g0024528' => 'lja', 'Lj6A399T12' => 'lonja', 'Lj6A656G65' => 'lonja', 'Lsat_1_v5_gn_3_125500' => 'lsa', 'Lsat_1_v5_gn_3_125540' => 'lsa', 'Lsat_1_v5_gn_5_72701' => 'lsa', 'Lsat_1_v5_gn_8_91560' => 'lsa', 'Lsat_1_v5_gn_9_9640' => 'lsa', 'Manes.01G200600' => 'mes', 'Manes.01G200700' => 'mes', 'Manes.03G168900' => 'mes', 'Manes.03G169000' => 'mes', 'Manes.05G085801' => 'mes', 'Manes.05G086200' => 'mes', 'Manes.15G036700' => 'mes', 'Manes.15G036900' => 'mes', 'Mapoly0004s0172' => 'mpo', 'Mapoly0023s0001' => 'mpo', 'Mapoly0142s0012' => 'mpo', 'MBI01_g32854_MAGBIO' => 'mbi', 'MBI11_g24427_MAGBIO' => 'mbi', 'MBI11_g47319_MAGBIO' => 'mbi', 'MCO01G433' => 'mco', 'MD00G1187800' => 'mdo', 'MD04G1226500' => 'mdo', 'MD05G1203900' => 'mdo', 'MD10G1191100' => 'mdo', 'MD12G1243500' => 'mdo', 'MD13G1207000' => 'mdo', 'MD13G1207100' => 'mdo', 'MD16G1208600' => 'mdo', 'Medtr1g050352' => 'mtr', 'Medtr1g070385' => 'mtr', 'Medtr1g070450' => 'mtr', 'Medtr1g075200' => 'mtr', 'Medtr1g075250' => 'mtr', 'Medtr1g075260' => 'mtr', 'Medtr1g475250' => 'mtr', 'Medtr4g075450' => 'mtr', 'Medtr7g096300' => 'mtr', 'Medtr8g105110' => 'mtr', 'MELO3C006470.2' => 'cme', 'MELO3C006471.2' => 'cme', 'MELO3C020772.2' => 'cme', 'MELO3C026780.2' => 'cme', 'MELO3C026781.2' => 'cme', 'Migut.D00390' => 'egut', 'Migut.G00435' => 'egut', 'Migut.G00436' => 'egut', 'Migut.G00718' => 'egut', 'MSTRG.21891' => 'ama', 'MSTRG.26910' => 'ama', 'MSTRG.4099' => 'ama', 'MSTRG.9925' => 'ama', 'Nitab4.5_0000165g0010' => 'nta', 'Nitab4.5_0000209g0180' => 'nta', 'Nitab4.5_0000244g0440' => 'nta', 'Nitab4.5_0000525g0220' => 'nta', 'Nitab4.5_0001597g0020' => 'nta', 'Nitab4.5_0001878g0040' => 'nta', 'Nitab4.5_0001878g0060' => 'nta', 'Nitab4.5_0002838g0100' => 'nta', 'Nitab4.5_0002838g0120' => 'nta', 'Nitab4.5_0004798g0030' => 'nta', 'Nitab4.5_0005420g0010' => 'nta', 'Nitab4.5_0005507g0010' => 'nta', 'Nitab4.5_0005574g0020' => 'nta', 'Nitab4.5_0005838g0010' => 'nta', 'Nitab4.5_0010580g0020' => 'nta', 'Nn1g02599' => 'nnu', 'Nn1g02608' => 'nnu', 'Nn3g17742' => 'nnu', 'Nn3g19534' => 'nnu', 'Nn3g19535' => 'nnu', 'Oeu008790.1' => 'oeu', 'Oeu008792.1' => 'oeu', 'Oeu032590.1' => 'oeu', 'Oeu035349.1' => 'oeu', 'Oeu049791.1' => 'oeu', 'Os01g0774500' => 'osa', 'Os03g0628800' => 'osa', 'Os03g0798600' => 'osa', 'Os05g0508800' => 'osa', 'Peaxi162Scf00036g02018' => 'pax', 'Peaxi162Scf00578g00032' => 'pax', 'Peaxi162Scf00578g00317' => 'pax', 'Peaxi162Scf00785g00114' => 'pax', 'Peaxi162Scf00813g00119' => 'pax', 'Peaxi162Scf00906g00227' => 'pax', 'PGR004G0875' => 'pgr', 'PGR004G2424' => 'pgr', 'PGR031G1239' => 'pgr', 'PGR031G2474' => 'pgr', 'PGR044G0423' => 'pgr', 'PGSC0003DMG400001128' => 'stu', 'PGSC0003DMG400007336' => 'stu', 'PGSC0003DMG400016318' => 'stu', 'PGSC0003DMG400016319' => 'stu', 'PGSC0003DMG400018074' => 'stu', 'Phvul.001G157700' => 'pvu', 'Phvul.002G148550' => 'pvu', 'Phvul.002G320200' => 'pvu', 'Phvul.003G089200' => 'pvu', 'Phvul.007G126000' => 'pvu', 'Phvul.007G126100' => 'pvu', 'Phvul.007G178000' => 'pvu', 'Phvul.007G178200' => 'pvu', 'Potri.002G043000' => 'ptr', 'Potri.002G043200' => 'ptr', 'Potri.003G123750' => 'ptr', 'Potri.005G055401' => 'ptr', 'Potri.005G219700' => 'ptr', 'Potri.005G220000' => 'ptr', 'Potri.008G161901' => 'ptr', 'Potri.008G162000' => 'ptr', 'Potri.008G162400' => 'ptr', 'Potri.010G076900' => 'ptr', 'Pp3c12_9180' => 'ppa', 'Pp3c13_19770' => 'ppa', 'Pp3c14_22950' => 'ppa', 'Pp3c16_12160' => 'ppa', 'Pp3c27_7820' => 'ppa', 'Pp3c2_3490' => 'ppa', 'Pp3c3_23700' => 'ppa', 'Pp3c3_36520' => 'ppa', 'Pp3c4_15250' => 'ppa', 'PRCOL_00007002' => 'pco', 'Prupe.1G030600' => 'ppe', 'Prupe.1G030700' => 'ppe', 'Prupe.6G345200' => 'ppe', 'Prupe.8G230300' => 'ppe', 'Prupe.8G230500' => 'ppe', 'Psat3g059600' => 'psa', 'Psat5g200920' => 'psa', 'Psat6g056440' => 'psa', 'Psat6g057360' => 'psa', 'Psat6g134120' => 'psa', 'Psat6g134160' => 'psa', 'Psat7g008640' => 'psa', 'Psat7g185240' => 'psa', 'PSO017G1330' => 'pso', 'PSO063G6097' => 'pso', 'PSO170G0835' => 'pso', 'PSO170G2499' => 'pso', 'PSO210G5058' => 'pso', 'PSO210G6154' => 'pso', 'PSO585G0031' => 'pso', 'PSO832G0264' => 'pso', 'PSO832G4288' => 'pso', 'QL03p027355' => 'qlo', 'QL03p027430' => 'qlo', 'QL04p081380' => 'qlo', 'QL06p015642' => 'qlo', 'QL06p015650' => 'qlo', 'QL06p015686' => 'qlo', 'QL12p042927' => 'qlo', 'QL93p1863_0035' => 'qlo', 'RcHm_v2.0_Chr3g0450581' => 'rch', 'RcHm_v2.0_Chr4g0390371' => 'rch', 'RcHm_v2.0_Chr4g0390381' => 'rch', 'RcHm_v2.0_Chr4g0390491' => 'rch', 'RcHm_v2.0_Chr4g0390501' => 'rch', 'RcHm_v2.0_Chr6g0289231' => 'rch', 'Rhsim04G0190400' => 'rsi', 'Rhsim04G0190500' => 'rsi', 'Rhsim04G0190600' => 'rsi', 'Rhsim13G0031400' => 'rsi', 'Rhsim13G0165600' => 'rsi', 'RhsimUnG0114600' => 'rsi', 'RhsimUnG0114700' => 'rsi', 'Sabra02G0034800' => 'sbr', 'Sabra02G0035100' => 'sbr', 'Sabra05G0168600' => 'sbr', 'Sabra05G0168800' => 'sbr', 'Sabra08G0123700' => 'sbr', 'Sabra10G0031900' => 'sbr', 'Sabra13G0039000' => 'sbr', 'SalBow2G0782' => 'sbo', 'SalBow2G1403' => 'sbo', 'SalBow4G0074' => 'sbo', 'SalBow4G2635' => 'sbo', 'SalBow5G3010' => 'sbo', 'Sc05g0000870' => 'sci', 'Sc05g0000890' => 'sci', 'Sc13g0005000' => 'sci', 'Sc13g0005030' => 'sci', 'Sc19g0003790' => 'sci', 'Sc19g0003800' => 'sci', 'Sed0003467' => 'sed', 'Sed0009355' => 'sed', 'Sed0009894' => 'sed', 'Sed0011972' => 'sed', 'Sed0021483' => 'sed', 'Sed0021750' => 'sed', 'Sed0026279' => 'sed', 'SEGI_05312' => 'sgi', 'SEGI_10112' => 'sgi', 'SEGI_15835' => 'sgi', 'SEGI_30386' => 'sgi', 'SEGI_34122' => 'sgi', 'SEGI_35063' => 'sgi', 'SGA_v2.0_scaffold101G29794' => 'sas', 'SGA_v2.0_scaffold1G00573' => 'sas', 'SGA_v2.0_scaffold79G25637' => 'sas', 'SGA_v2.0_scaffold88G27283' => 'sas', 'SGA_v2.0_scaffold88G27285' => 'sas', 'SGA_v2.0_scaffold88G27331' => 'sas', 'SHI09937' => 'shi', 'SMO119G0302' => 'smo', 'SMO137G0231' => 'smo', 'SMO367G1151' => 'smo', 'Solyc02g082000.3' => 'sly', 'Solyc06g031670.3' => 'sly', 'Solyc06g053810.3' => 'sly', 'Solyc07g025457.1' => 'sly', 'Solyc08g059740.1' => 'sly', 'Solyc08g059750.3' => 'sly', 'Solyc09g083370.3' => 'sly', 'Solyc12g038950.3' => 'sly', 'Sopen02g026630' => 'spe', 'Sopen06g018930' => 'spe', 'Sopen06g018940' => 'spe', 'Sopen08g009460' => 'spe', 'Sopen09g032290' => 'spe', 'Sp1g03080' => 'spa', 'Sp1g03090' => 'spa', 'Sp1g05480' => 'spa', 'Sp2g07860' => 'spa', 'Sp2g08430' => 'spa', 'Sp2g08440' => 'spa', 'Sp2g26200' => 'spa', 'Sp4g13170' => 'spa', 'Sp6g33840' => 'spa', 'SpUn1204_0010' => 'spa', 'TAR365G0908' => 'tar', 'TAR381G1270' => 'tar', 'TAR381G1651' => 'tar', 'TAR625G1131' => 'tar', 'TAR633G0962' => 'tar', 'TAR633G1729' => 'tar', 'TAR633G1864' => 'tar', 'TAR636G0221' => 'tar', 'TAR636G0314' => 'tar', 'TAR636G3202' => 'tar', 'THA.LOC104800805' => 'tha', 'THA.LOC104801096' => 'tha', 'THA.LOC104801555' => 'tha', 'THA.LOC104808491' => 'tha', 'THA.LOC104808595' => 'tha', 'THA.LOC104815985' => 'tha', 'THA.LOC104822250' => 'tha', 'THA.LOC104826071' => 'tha', 'Thecc.01G265200' => 'tca', 'Thecc.01G265300' => 'tca', 'Thecc.01G265700' => 'tca', 'Thecc.03G109100' => 'tca', 'Thecc.04G245900' => 'tca', 'Thecc.04G246000' => 'tca', 'Thhalv10003334m.g' => 'esa', 'Thhalv10005508m.g' => 'esa', 'Thhalv10005643m.g' => 'esa', 'Thhalv10007316m.g' => 'esa', 'Thhalv10009006m.g' => 'esa', 'Thhalv10009309m.g' => 'esa', 'Thhalv10014917m.g' => 'esa', 'Thhalv10014919m.g' => 'esa', 'Thhalv10015393m.g' => 'esa', 'Thhalv10016515m.g' => 'esa', 'Thhalv10029242m.g' => 'esa', 'TPR.G16654' => 'tpr', 'TPR.G20589' => 'tpr', 'TPR.G23029' => 'tpr', 'TPR.G27731' => 'tpr', 'TPR.G28889' => 'tpr', 'TPR.G28899' => 'tpr', 'TPR.G30846' => 'tpr', 'TPR.G5452' => 'tpr', 'TPR.G5713' => 'tpr', 'TPR.G9046' => 'tpr', 'TPR.G9061' => 'tpr', 'TWI09G1075' => 'twi', 'TWI12G0806' => 'twi', 'TWI18G0108' => 'twi', 'TWI53G1361' => 'twi', 'TWI73G0185' => 'twi', 'TWI73G0427' => 'twi', 'unitig_37.g12001' => 'ugi', 'unitig_747.g21660' => 'ugi', 'unitig_748.g7232' => 'ugi', 'unitig_748.g7315' => 'ugi', 'unitig_85.g27262' => 'ugi', 'unitig_92.g28220' => 'ugi', 'vmacro02632' => 'vma', 'vmacro08410' => 'vma', 'vmacro08411' => 'vma', 'vmacro15407' => 'vma', 'VMungo0251G3619' => 'vmu', 'VMungo0720G1204' => 'vmu', 'VMungo0720G1918' => 'vmu', 'VMungo0720G2387' => 'vmu', 'VMungo0720G2961' => 'vmu', 'VMungo1215G2154' => 'vmu', 'VMungo1383G2411' => 'vmu', 'Zm00001eb051130' => 'zma', 'Zm00001eb116830' => 'zma', 'Zm00001eb116850' => 'zma', 'Zm00001eb151740' => 'zma', 'Zm00001eb292360' => 'zma', 'Zm00001eb301640' => 'zma' ) $gf_id = 'HOM05D000856' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000856' ) $data_identifier = 'HOM05D000856' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 13, 'ath' => (int) 10, 'atr' => (int) 1, 'acertr' => (int) 8, 'cqu' => (int) 6, 'bca' => (int) 21, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 11, 'car' => (int) 9, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 8, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 5, 'fan' => (int) 16, 'fve' => (int) 6, 'gma' => (int) 11, 'ghi' => (int) 19, 'gra' => (int) 9, 'vvi' => (int) 7, 'han' => (int) 17, 'cav' => (int) 5, 'hma' => (int) 2, 'vpl' => (int) 2, 'sun' => (int) 7, 'lal' => (int) 9, 'lja' => (int) 5, 'lonja' => (int) 9, 'lsa' => (int) 5, 'mes' => (int) 8, 'mpo' => (int) 3, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 10, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 15, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 9, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 9, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 6, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 5, 'spa' => (int) 10, 'tar' => (int) 10, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 11, 'tpr' => (int) 11, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 4, 'vmu' => (int) 7, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb301640' $species_info = array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ) $local_species = 'can' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000856', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p00010' => 'bna', 'A03p04160' => 'bna', 'A03p17160' => 'bna', 'A04p23370' => 'bna', 'A05p14860' => 'bna', 'A08p37020' => 'bna', 'A09p08050' => 'bna', 'A09p66800' => 'bna', 'A09p67940' => 'bna', 'A10p02680' => 'bna', 'A10p05320' => 'bna', 'Aa31LG1G20560' => 'aar', 'Aa31LG1G20610' => 'aar', 'Aa31LG1G7810' => 'aar', 'Aa31LG5G3590' => 'aar', 'Aa31LG5G6140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3819' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4683' => 'aag', 'Actinidia04480' => 'ach', 'Actinidia05466' => 'ach', 'Actinidia08445' => 'ach', 'Actinidia21170' => 'ach', 'Actinidia24812' => 'ach', 'Actinidia24951' => 'ach', 'Actinidia40088' => 'ach', 'Ah.02g111660' => 'amhyb', 'Ah.11g048900' => 'amhyb', 'Ah.11g049910' => 'amhyb', 'AL1G13870' => 'aly', 'AL1G13880' => 'aly', 'AL1G16760' => 'aly', 'AL390U10020' => 'aly', 'AL4G25520' => 'aly', 'AL6G19890' => 'aly', 'AL6G19900' => 'aly', 'AL6G19910' => 'aly', 'AL8G40100' => 'aly', 'Aqoxy2G03562' => 'aox', 'Aqoxy5G00316' => 'aox', 'Aqoxy5G00926' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1628KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1H403S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2FU6SJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.882I6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8YRY2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YN1SN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AF70II' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZA8L1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F916KL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHRD8H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KTZ8QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S22EMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8M29T' => 'arhy', 'AT1G04270' => 'ath', 'AT1G04280' => 'ath', 'AT1G06750' => 'ath', 'AT1G33850' => 'ath', 'AT2G30630' => 'ath', 'AT5G09490' => 'ath', 'AT5G09500' => 'ath', 'AT5G09510' => 'ath', 'AT5G43640' => 'ath', 'AT5G63070' => 'ath', 'ATR0605G315' => 'atr', 'Atru.chr11.175' => 'acertr', 'Atru.chr11.653' => 'acertr', 'Atru.chr3.1616' => 'acertr', 'Atru.chr4.2230' => 'acertr', 'Atru.chr4.2232' => 'acertr', 'Atru.chr5.1598' => 'acertr', 'Atru.chr5.1600' => 'acertr', 'Atru.chr5.2188' => 'acertr', 'AUR62008326' => 'cqu', 'AUR62011922' => 'cqu', 'AUR62011924' => 'cqu', 'AUR62021771' => 'cqu', 'AUR62032237' => 'cqu', 'AUR62032240' => 'cqu', 'BcaB01g05572' => 'bca', 'BcaB02g10337' => 'bca', 'BcaB04g19944' => 'bca', 'BcaB05g21548' => 'bca', 'BcaB05g21549' => 'bca', 'BcaB05g23227' => 'bca', 'BcaB06g26256' => 'bca', 'BcaB06g26257' => 'bca', 'BcaB06g28379' => 'bca', 'BcaC02g11159' => 'bca', 'BcaC03g13258' => 'bca', 'BcaC03g13259' => 'bca', 'BcaC05g24456' => 'bca', 'BcaC05g24457' => 'bca', 'BcaC07g36922' => 'bca', 'BcaC07g36923' => 'bca', 'BcaC07g42050' => 'bca', 'BcaC07g42176' => 'bca', 'BcaC07g42195' => 'bca', 'BcaC07g42196' => 'bca', 'BcaNung06674' => 'bca', 'BolC2t06351H' => 'bol', 'BolC2t06352H' => 'bol', 'BolC3t12993H' => 'bol', 'BolC4t23525H' => 'bol', 'BolC4t27475H' => 'bol', 'BolC5t29025H' => 'bol', 'BolC5t29026H' => 'bol', 'BolC8t46898H' => 'bol', 'BolC8t46899H' => 'bol', 'BolC8t52630H' => 'bol', 'BolC8t52765H' => 'bol', 'BolC9t53824H' => 'bol', 'BraA03t09760Z' => 'bra', 'BraA03t10990Z' => 'bra', 'BraA05t20413Z' => 'bra', 'BraA08t35602Z' => 'bra', 'BraA09t36458Z' => 'bra', 'BraA09t42018Z' => 'bra', 'BraA09t42129Z' => 'bra', 'BraA10t42536Z' => 'bra', 'BraA10t42537Z' => 'bra', 'C01p10690' => 'bna', 'C02p03890' => 'bna', 'C02p03900' => 'bna', 'C03p04620' => 'bna', 'C04p19870' => 'bna', 'C04p59670' => 'bna', 'C05p02460' => 'bna', 'C05p02470' => 'bna', 'C08p00980' => 'bna', 'C08p00990' => 'bna', 'C08p51030' => 'bna', 'C08p52360' => 'bna', 'C09p09120' => 'bna', 'CAN.G19.15' => 'can', 'CAN.G251.10' => 'can', 'CAN.G251.9' => 'can', 'CAN.G398.24' => 'can', 'CAN.G410.32' => 'can', 'CAN.G881.2' => 'can', 'CANSAT01G3025' => 'cansat', 'CANSAT78G1211' => 'cansat', 'CANSAT78G1218' => 'cansat', 'CANSAT78G1521' => 'cansat', 'CANSAT78G1670' => 'cansat', 'CARHR003600' => 'chi', 'CARHR003610' => 'chi', 'CARHR006290' => 'chi', 'CARHR006430' => 'chi', 'CARHR124110' => 'chi', 'CARHR203870' => 'chi', 'CARHR203880' => 'chi', 'CARHR203890' => 'chi', 'CARHR276880' => 'chi', 'Carub.0001s0346' => 'cru', 'Carub.0001s0347' => 'cru', 'Carub.0001s0607' => 'cru', 'Carub.0003s2768' => 'cru', 'Carub.0003s2769' => 'cru', 'Carub.0004s1178' => 'cru', 'Carub.0006s0806' => 'cru', 'Carub.0006s0807' => 'cru', 'Carub.0006s0808' => 'cru', 'Carub.0008s0501' => 'cru', 'Carub.0008s2379' => 'cru', 'Ca_08655_v3' => 'car', 'Ca_08922_v3' => 'car', 'Ca_08923_v3' => 'car', 'Ca_09119_v3' => 'car', 'Ca_09703_v3' => 'car', 'Ca_09705_v3' => 'car', 'Ca_09835_v3' => 'car', 'Ca_26403_v3' => 'car', 'Ca_30719_v3' => 'car', 'CBR_g17958' => 'cbr', 'CBR_g40516' => 'cbr', 'Cc00_g05350' => 'ccan', 'Cc01_g18690' => 'ccan', 'Cc03_g04830' => 'ccan', 'Cc03_g04850' => 'ccan', 'CDE02G4469' => 'cde', 'CDE06G0883' => 'cde', 'CDE06G1295' => 'cde', 'CDE06G1390' => 'cde', 'CDE07G0584' => 'cde', 'CDE07G1084' => 'cde', 'CDE08G1259' => 'cde', 'Cfa002341' => 'cfa', 'Cfa024337' => 'cfa', 'Ciclev10004749m.g' => 'ccl', 'Ciclev10006127m.g' => 'ccl', 'Ciclev10019720m.g' => 'ccl', 'Ciclev10022652m.g' => 'ccl', 'CiPaw.01G190400' => 'cil', 'CiPaw.01G190500' => 'cil', 'CiPaw.02G116400' => 'cil', 'CiPaw.02G116500' => 'cil', 'CiPaw.04G183000' => 'cil', 'CiPaw.04G183300' => 'cil', 'ClCG05G004610' => 'cla', 'ClCG05G004620' => 'cla', 'ClCG06G006730' => 'cla', 'ClCG06G006740' => 'cla', 'ClCG11G003690' => 'cla', 'COL.COLO4_08276' => 'col', 'COL.COLO4_08277' => 'col', 'COL.COLO4_15787' => 'col', 'COL.COLO4_15789' => 'col', 'Cpa.g.c44815' => 'cpa', 'Cpa.g.sc52.144' => 'cpa', 'Cpa.g.sc58.46' => 'cpa', 'Cpa.g.sc58.47' => 'cpa', 'Cre08.g360900' => 'cre', 'CsaV3_2G013030' => 'csa', 'CsaV3_2G013050' => 'csa', 'CsaV3_2G015620' => 'csa', 'CsaV3_3G012590' => 'csa', 'CsaV3_3G012600' => 'csa', 'CSS0001641' => 'camsi', 'CSS0008310' => 'camsi', 'CSS0013011' => 'camsi', 'CSS0017147' => 'camsi', 'CSS0022970' => 'camsi', 'CSS0025655' => 'camsi', 'CSS0028665' => 'camsi', 'CSS0029117' => 'camsi', 'CSS0032024' => 'camsi', 'CSS0039681' => 'camsi', 'CSS0046516' => 'camsi', 'CSS0050307' => 'camsi', 'DCAR_005871' => 'dca', 'DCAR_007342' => 'dca', 'DCAR_024228' => 'dca', 'DCAR_027277' => 'dca', 'DCAR_030718' => 'dca', 'Dinv20287' => 'din', 'Dinv22461' => 'din', 'Dinv22464' => 'din', 'Dinv29912' => 'din', 'Dinv29913' => 'din', 'Dinv34580' => 'din', 'Dinv34582' => 'din', 'Dinv44632' => 'din', 'Duzib052G0266' => 'dzi', 'Duzib133G0907' => 'dzi', 'Duzib133G1034' => 'dzi', 'Duzib138G0207' => 'dzi', 'Duzib138G0491' => 'dzi', 'Duzib151G0812' => 'dzi', 'Duzib151G1166' => 'dzi', 'Duzib168G0192' => 'dzi', 'Duzib211G0077' => 'dzi', 'Duzib212G0429' => 'dzi', 'Duzib212G0472' => 'dzi', 'ECA233G2617' => 'eca', 'ECA236G4188' => 'eca', 'ECA240G0936' => 'eca', 'ECA240G1129' => 'eca', 'ECA247G0623' => 'eca', 'EL10Ac5g10451' => 'bvu', 'EL10Ac5g10453' => 'bvu', 'EL10Ac5g10894' => 'bvu', 'Eucgr.H00192' => 'egr', 'Eucgr.H00193' => 'egr', 'Eucgr.H00194' => 'egr', 'Eucgr.J01562' => 'egr', 'Eucgr.K03301' => 'egr', 'FAN02G0632' => 'fan', 'FAN05G5378' => 'fan', 'FAN09G3247' => 'fan', 'FAN12G0435' => 'fan', 'FAN12G2426' => 'fan', 'FAN14G1707' => 'fan', 'FAN14G4725' => 'fan', 'FAN15G2071' => 'fan', 'FAN17G3065' => 'fan', 'FAN19G1376' => 'fan', 'FAN20G0354' => 'fan', 'FAN20G2429' => 'fan', 'FAN20G2658' => 'fan', 'FAN24G2343' => 'fan', 'FAN27G2362' => 'fan', 'FAN28G1765' => 'fan', 'FvH4_1g16020' => 'fve', 'FvH4_2g04890' => 'fve', 'FvH4_2g22270' => 'fve', 'FvH4_4g02630' => 'fve', 'FvH4_4g02640' => 'fve', 'FvH4_6g02650' => 'fve', 'Glyma.02G140600' => 'gma', 'Glyma.03G159900' => 'gma', 'Glyma.05G234800' => 'gma', 'Glyma.07G269600' => 'gma', 'Glyma.08G042300' => 'gma', 'Glyma.10G033500' => 'gma', 'Glyma.10G185200' => 'gma', 'Glyma.17G004300' => 'gma', 'Glyma.19G161900' => 'gma', 'Glyma.20G205100' => 'gma', 'Glyma.20G205200' => 'gma', 'Gohir.A01G139101' => 'ghi', 'Gohir.A02G035600' => 'ghi', 'Gohir.A02G117901' => 'ghi', 'Gohir.A07G210100' => 'ghi', 'Gohir.A07G210200' => 'ghi', 'Gohir.A08G061100' => 'ghi', 'Gohir.A09G223000' => 'ghi', 'Gohir.A09G223100' => 'ghi', 'Gohir.A10G113900' => 'ghi', 'Gohir.A10G114000' => 'ghi', 'Gohir.D02G042300' => 'ghi', 'Gohir.D07G216100' => 'ghi', 'Gohir.D07G216200' => 'ghi', 'Gohir.D08G070400' => 'ghi', 'Gohir.D09G225000' => 'ghi', 'Gohir.D09G225100' => 'ghi', 'Gohir.D10G152300' => 'ghi', 'Gohir.D10G153200' => 'ghi', 'Gohir.D11G133701' => 'ghi', 'Gorai.004G074100' => 'gra', 'Gorai.005G046800' => 'gra', 'Gorai.006G246500' => 'gra', 'Gorai.006G246600' => 'gra', 'Gorai.007G142900' => 'gra', 'Gorai.011G171000' => 'gra', 'Gorai.011G171100' => 'gra', 'Gorai.013G104300' => 'gra', 'Gorai.013G104400' => 'gra', 'GSVIVG01000754001' => 'vvi', 'GSVIVG01000756001' => 'vvi', 'GSVIVG01010903001' => 'vvi', 'GSVIVG01017623001' => 'vvi', 'GSVIVG01018113001' => 'vvi', 'GSVIVG01018116001' => 'vvi', 'GSVIVG01018118001' => 'vvi', 'HanXRQChr03g0076211' => 'han', 'HanXRQChr03g0092431' => 'han', 'HanXRQChr03g0092441' => 'han', 'HanXRQChr03g0092591' => 'han', 'HanXRQChr03g0092671' => 'han', 'HanXRQChr03g0092681' => 'han', 'HanXRQChr03g0092691' => 'han', 'HanXRQChr03g0092701' => 'han', 'HanXRQChr03g0092721' => 'han', 'HanXRQChr03g0092731' => 'han', 'HanXRQChr04g0113681' => 'han', 'HanXRQChr10g0281371' => 'han', 'HanXRQChr11g0337141' => 'han', 'HanXRQChr13g0424521' => 'han', 'HanXRQChr13g0424531' => 'han', 'HanXRQChr13g0424541' => 'han', 'HanXRQChr16g0498221' => 'han', 'Haze_04377' => 'cav', 'Haze_11298' => 'cav', 'Haze_24547' => 'cav', 'Haze_24550' => 'cav', 'Haze_26587' => 'cav', 'Hma1.2p1_0650F.1_g195410' => 'hma', 'Hma1.2p1_0893F.1_g233470' => 'hma', 'HPP92_006508' => 'vpl', 'HPP92_024780' => 'vpl', 'Hund02688' => 'sun', 'Hund09380' => 'sun', 'Hund09381' => 'sun', 'Hund09832' => 'sun', 'Hund09833' => 'sun', 'Hund11351' => 'sun', 'Hund11513' => 'sun', 'Lalb_Chr06g0162591' => 'lal', 'Lalb_Chr06g0162601' => 'lal', 'Lalb_Chr06g0169321' => 'lal', 'Lalb_Chr09g0330951' => 'lal', 'Lalb_Chr16g0387631' => 'lal', 'Lalb_Chr21g0306241' => 'lal', 'Lalb_Chr25g0290051' => 'lal', 'Lalb_Chr25g0290061' => 'lal', 'Lalb_Chr25g0290071' => 'lal', 'Lj1g0003876' => 'lja', 'Lj1P1207T36' => 'lonja', 'Lj2C1156G12' => 'lonja', 'Lj3A793G39' => 'lonja', 'Lj3C580G2' => 'lonja', 'Lj3C780G2' => 'lonja', 'Lj3C780T4' => 'lonja', 'Lj3C793G9' => 'lonja', 'Lj4g0012960' => 'lja', 'Lj5g0021252' => 'lja', 'Lj5g0021484' => 'lja', 'Lj5g0024528' => 'lja', 'Lj6A399T12' => 'lonja', 'Lj6A656G65' => 'lonja', 'Lsat_1_v5_gn_3_125500' => 'lsa', 'Lsat_1_v5_gn_3_125540' => 'lsa', 'Lsat_1_v5_gn_5_72701' => 'lsa', 'Lsat_1_v5_gn_8_91560' => 'lsa', 'Lsat_1_v5_gn_9_9640' => 'lsa', 'Manes.01G200600' => 'mes', 'Manes.01G200700' => 'mes', 'Manes.03G168900' => 'mes', 'Manes.03G169000' => 'mes', 'Manes.05G085801' => 'mes', 'Manes.05G086200' => 'mes', 'Manes.15G036700' => 'mes', 'Manes.15G036900' => 'mes', 'Mapoly0004s0172' => 'mpo', 'Mapoly0023s0001' => 'mpo', 'Mapoly0142s0012' => 'mpo', 'MBI01_g32854_MAGBIO' => 'mbi', 'MBI11_g24427_MAGBIO' => 'mbi', 'MBI11_g47319_MAGBIO' => 'mbi', 'MCO01G433' => 'mco', 'MD00G1187800' => 'mdo', 'MD04G1226500' => 'mdo', 'MD05G1203900' => 'mdo', 'MD10G1191100' => 'mdo', 'MD12G1243500' => 'mdo', 'MD13G1207000' => 'mdo', 'MD13G1207100' => 'mdo', 'MD16G1208600' => 'mdo', 'Medtr1g050352' => 'mtr', 'Medtr1g070385' => 'mtr', 'Medtr1g070450' => 'mtr', 'Medtr1g075200' => 'mtr', 'Medtr1g075250' => 'mtr', 'Medtr1g075260' => 'mtr', 'Medtr1g475250' => 'mtr', 'Medtr4g075450' => 'mtr', 'Medtr7g096300' => 'mtr', 'Medtr8g105110' => 'mtr', 'MELO3C006470.2' => 'cme', 'MELO3C006471.2' => 'cme', 'MELO3C020772.2' => 'cme', 'MELO3C026780.2' => 'cme', 'MELO3C026781.2' => 'cme', 'Migut.D00390' => 'egut', 'Migut.G00435' => 'egut', 'Migut.G00436' => 'egut', 'Migut.G00718' => 'egut', 'MSTRG.21891' => 'ama', 'MSTRG.26910' => 'ama', 'MSTRG.4099' => 'ama', 'MSTRG.9925' => 'ama', 'Nitab4.5_0000165g0010' => 'nta', 'Nitab4.5_0000209g0180' => 'nta', 'Nitab4.5_0000244g0440' => 'nta', 'Nitab4.5_0000525g0220' => 'nta', 'Nitab4.5_0001597g0020' => 'nta', 'Nitab4.5_0001878g0040' => 'nta', 'Nitab4.5_0001878g0060' => 'nta', 'Nitab4.5_0002838g0100' => 'nta', 'Nitab4.5_0002838g0120' => 'nta', 'Nitab4.5_0004798g0030' => 'nta', 'Nitab4.5_0005420g0010' => 'nta', 'Nitab4.5_0005507g0010' => 'nta', 'Nitab4.5_0005574g0020' => 'nta', 'Nitab4.5_0005838g0010' => 'nta', 'Nitab4.5_0010580g0020' => 'nta', 'Nn1g02599' => 'nnu', 'Nn1g02608' => 'nnu', 'Nn3g17742' => 'nnu', 'Nn3g19534' => 'nnu', 'Nn3g19535' => 'nnu', 'Oeu008790.1' => 'oeu', 'Oeu008792.1' => 'oeu', 'Oeu032590.1' => 'oeu', 'Oeu035349.1' => 'oeu', 'Oeu049791.1' => 'oeu', 'Os01g0774500' => 'osa', 'Os03g0628800' => 'osa', 'Os03g0798600' => 'osa', 'Os05g0508800' => 'osa', 'Peaxi162Scf00036g02018' => 'pax', 'Peaxi162Scf00578g00032' => 'pax', 'Peaxi162Scf00578g00317' => 'pax', 'Peaxi162Scf00785g00114' => 'pax', 'Peaxi162Scf00813g00119' => 'pax', 'Peaxi162Scf00906g00227' => 'pax', 'PGR004G0875' => 'pgr', 'PGR004G2424' => 'pgr', 'PGR031G1239' => 'pgr', 'PGR031G2474' => 'pgr', 'PGR044G0423' => 'pgr', 'PGSC0003DMG400001128' => 'stu', 'PGSC0003DMG400007336' => 'stu', 'PGSC0003DMG400016318' => 'stu', 'PGSC0003DMG400016319' => 'stu', 'PGSC0003DMG400018074' => 'stu', 'Phvul.001G157700' => 'pvu', 'Phvul.002G148550' => 'pvu', 'Phvul.002G320200' => 'pvu', 'Phvul.003G089200' => 'pvu', 'Phvul.007G126000' => 'pvu', 'Phvul.007G126100' => 'pvu', 'Phvul.007G178000' => 'pvu', 'Phvul.007G178200' => 'pvu', 'Potri.002G043000' => 'ptr', 'Potri.002G043200' => 'ptr', 'Potri.003G123750' => 'ptr', 'Potri.005G055401' => 'ptr', 'Potri.005G219700' => 'ptr', 'Potri.005G220000' => 'ptr', 'Potri.008G161901' => 'ptr', 'Potri.008G162000' => 'ptr', 'Potri.008G162400' => 'ptr', 'Potri.010G076900' => 'ptr', 'Pp3c12_9180' => 'ppa', 'Pp3c13_19770' => 'ppa', 'Pp3c14_22950' => 'ppa', 'Pp3c16_12160' => 'ppa', 'Pp3c27_7820' => 'ppa', 'Pp3c2_3490' => 'ppa', 'Pp3c3_23700' => 'ppa', 'Pp3c3_36520' => 'ppa', 'Pp3c4_15250' => 'ppa', 'PRCOL_00007002' => 'pco', 'Prupe.1G030600' => 'ppe', 'Prupe.1G030700' => 'ppe', 'Prupe.6G345200' => 'ppe', 'Prupe.8G230300' => 'ppe', 'Prupe.8G230500' => 'ppe', 'Psat3g059600' => 'psa', 'Psat5g200920' => 'psa', 'Psat6g056440' => 'psa', 'Psat6g057360' => 'psa', 'Psat6g134120' => 'psa', 'Psat6g134160' => 'psa', 'Psat7g008640' => 'psa', 'Psat7g185240' => 'psa', 'PSO017G1330' => 'pso', 'PSO063G6097' => 'pso', 'PSO170G0835' => 'pso', 'PSO170G2499' => 'pso', 'PSO210G5058' => 'pso', 'PSO210G6154' => 'pso', 'PSO585G0031' => 'pso', 'PSO832G0264' => 'pso', 'PSO832G4288' => 'pso', 'QL03p027355' => 'qlo', 'QL03p027430' => 'qlo', 'QL04p081380' => 'qlo', 'QL06p015642' => 'qlo', 'QL06p015650' => 'qlo', 'QL06p015686' => 'qlo', 'QL12p042927' => 'qlo', 'QL93p1863_0035' => 'qlo', 'RcHm_v2.0_Chr3g0450581' => 'rch', 'RcHm_v2.0_Chr4g0390371' => 'rch', 'RcHm_v2.0_Chr4g0390381' => 'rch', 'RcHm_v2.0_Chr4g0390491' => 'rch', 'RcHm_v2.0_Chr4g0390501' => 'rch', 'RcHm_v2.0_Chr6g0289231' => 'rch', 'Rhsim04G0190400' => 'rsi', 'Rhsim04G0190500' => 'rsi', 'Rhsim04G0190600' => 'rsi', 'Rhsim13G0031400' => 'rsi', 'Rhsim13G0165600' => 'rsi', 'RhsimUnG0114600' => 'rsi', 'RhsimUnG0114700' => 'rsi', 'Sabra02G0034800' => 'sbr', 'Sabra02G0035100' => 'sbr', 'Sabra05G0168600' => 'sbr', 'Sabra05G0168800' => 'sbr', 'Sabra08G0123700' => 'sbr', 'Sabra10G0031900' => 'sbr', 'Sabra13G0039000' => 'sbr', 'SalBow2G0782' => 'sbo', 'SalBow2G1403' => 'sbo', 'SalBow4G0074' => 'sbo', 'SalBow4G2635' => 'sbo', 'SalBow5G3010' => 'sbo', 'Sc05g0000870' => 'sci', 'Sc05g0000890' => 'sci', 'Sc13g0005000' => 'sci', 'Sc13g0005030' => 'sci', 'Sc19g0003790' => 'sci', 'Sc19g0003800' => 'sci', 'Sed0003467' => 'sed', 'Sed0009355' => 'sed', 'Sed0009894' => 'sed', 'Sed0011972' => 'sed', 'Sed0021483' => 'sed', 'Sed0021750' => 'sed', 'Sed0026279' => 'sed', 'SEGI_05312' => 'sgi', 'SEGI_10112' => 'sgi', 'SEGI_15835' => 'sgi', 'SEGI_30386' => 'sgi', 'SEGI_34122' => 'sgi', 'SEGI_35063' => 'sgi', 'SGA_v2.0_scaffold101G29794' => 'sas', 'SGA_v2.0_scaffold1G00573' => 'sas', 'SGA_v2.0_scaffold79G25637' => 'sas', 'SGA_v2.0_scaffold88G27283' => 'sas', 'SGA_v2.0_scaffold88G27285' => 'sas', 'SGA_v2.0_scaffold88G27331' => 'sas', 'SHI09937' => 'shi', 'SMO119G0302' => 'smo', 'SMO137G0231' => 'smo', 'SMO367G1151' => 'smo', 'Solyc02g082000.3' => 'sly', 'Solyc06g031670.3' => 'sly', 'Solyc06g053810.3' => 'sly', 'Solyc07g025457.1' => 'sly', 'Solyc08g059740.1' => 'sly', 'Solyc08g059750.3' => 'sly', 'Solyc09g083370.3' => 'sly', 'Solyc12g038950.3' => 'sly', 'Sopen02g026630' => 'spe', 'Sopen06g018930' => 'spe', 'Sopen06g018940' => 'spe', 'Sopen08g009460' => 'spe', 'Sopen09g032290' => 'spe', 'Sp1g03080' => 'spa', 'Sp1g03090' => 'spa', 'Sp1g05480' => 'spa', 'Sp2g07860' => 'spa', 'Sp2g08430' => 'spa', 'Sp2g08440' => 'spa', 'Sp2g26200' => 'spa', 'Sp4g13170' => 'spa', 'Sp6g33840' => 'spa', 'SpUn1204_0010' => 'spa', 'TAR365G0908' => 'tar', 'TAR381G1270' => 'tar', 'TAR381G1651' => 'tar', 'TAR625G1131' => 'tar', 'TAR633G0962' => 'tar', 'TAR633G1729' => 'tar', 'TAR633G1864' => 'tar', 'TAR636G0221' => 'tar', 'TAR636G0314' => 'tar', 'TAR636G3202' => 'tar', 'THA.LOC104800805' => 'tha', 'THA.LOC104801096' => 'tha', 'THA.LOC104801555' => 'tha', 'THA.LOC104808491' => 'tha', 'THA.LOC104808595' => 'tha', 'THA.LOC104815985' => 'tha', 'THA.LOC104822250' => 'tha', 'THA.LOC104826071' => 'tha', 'Thecc.01G265200' => 'tca', 'Thecc.01G265300' => 'tca', 'Thecc.01G265700' => 'tca', 'Thecc.03G109100' => 'tca', 'Thecc.04G245900' => 'tca', 'Thecc.04G246000' => 'tca', 'Thhalv10003334m.g' => 'esa', 'Thhalv10005508m.g' => 'esa', 'Thhalv10005643m.g' => 'esa', 'Thhalv10007316m.g' => 'esa', 'Thhalv10009006m.g' => 'esa', 'Thhalv10009309m.g' => 'esa', 'Thhalv10014917m.g' => 'esa', 'Thhalv10014919m.g' => 'esa', 'Thhalv10015393m.g' => 'esa', 'Thhalv10016515m.g' => 'esa', 'Thhalv10029242m.g' => 'esa', 'TPR.G16654' => 'tpr', 'TPR.G20589' => 'tpr', 'TPR.G23029' => 'tpr', 'TPR.G27731' => 'tpr', 'TPR.G28889' => 'tpr', 'TPR.G28899' => 'tpr', 'TPR.G30846' => 'tpr', 'TPR.G5452' => 'tpr', 'TPR.G5713' => 'tpr', 'TPR.G9046' => 'tpr', 'TPR.G9061' => 'tpr', 'TWI09G1075' => 'twi', 'TWI12G0806' => 'twi', 'TWI18G0108' => 'twi', 'TWI53G1361' => 'twi', 'TWI73G0185' => 'twi', 'TWI73G0427' => 'twi', 'unitig_37.g12001' => 'ugi', 'unitig_747.g21660' => 'ugi', 'unitig_748.g7232' => 'ugi', 'unitig_748.g7315' => 'ugi', 'unitig_85.g27262' => 'ugi', 'unitig_92.g28220' => 'ugi', 'vmacro02632' => 'vma', 'vmacro08410' => 'vma', 'vmacro08411' => 'vma', 'vmacro15407' => 'vma', 'VMungo0251G3619' => 'vmu', 'VMungo0720G1204' => 'vmu', 'VMungo0720G1918' => 'vmu', 'VMungo0720G2387' => 'vmu', 'VMungo0720G2961' => 'vmu', 'VMungo1215G2154' => 'vmu', 'VMungo1383G2411' => 'vmu', 'Zm00001eb051130' => 'zma', 'Zm00001eb116830' => 'zma', 'Zm00001eb116850' => 'zma', 'Zm00001eb151740' => 'zma', 'Zm00001eb292360' => 'zma', 'Zm00001eb301640' => 'zma' ), 'gf_id' => 'HOM05D000856', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000856' ), 'data_identifier' => 'HOM05D000856', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000856', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p00010' => 'bna', 'A03p04160' => 'bna', 'A03p17160' => 'bna', 'A04p23370' => 'bna', 'A05p14860' => 'bna', 'A08p37020' => 'bna', 'A09p08050' => 'bna', 'A09p66800' => 'bna', 'A09p67940' => 'bna', 'A10p02680' => 'bna', 'A10p05320' => 'bna', 'Aa31LG1G20560' => 'aar', 'Aa31LG1G20610' => 'aar', 'Aa31LG1G7810' => 'aar', 'Aa31LG5G3590' => 'aar', 'Aa31LG5G6140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3819' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4683' => 'aag', 'Actinidia04480' => 'ach', 'Actinidia05466' => 'ach', 'Actinidia08445' => 'ach', 'Actinidia21170' => 'ach', 'Actinidia24812' => 'ach', 'Actinidia24951' => 'ach', 'Actinidia40088' => 'ach', 'Ah.02g111660' => 'amhyb', 'Ah.11g048900' => 'amhyb', 'Ah.11g049910' => 'amhyb', 'AL1G13870' => 'aly', 'AL1G13880' => 'aly', 'AL1G16760' => 'aly', 'AL390U10020' => 'aly', 'AL4G25520' => 'aly', 'AL6G19890' => 'aly', 'AL6G19900' => 'aly', 'AL6G19910' => 'aly', 'AL8G40100' => 'aly', 'Aqoxy2G03562' => 'aox', 'Aqoxy5G00316' => 'aox', 'Aqoxy5G00926' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1628KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1H403S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2FU6SJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.882I6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8YRY2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YN1SN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AF70II' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZA8L1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F916KL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHRD8H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KTZ8QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S22EMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8M29T' => 'arhy', 'AT1G04270' => 'ath', 'AT1G04280' => 'ath', 'AT1G06750' => 'ath', 'AT1G33850' => 'ath', 'AT2G30630' => 'ath', 'AT5G09490' => 'ath', 'AT5G09500' => 'ath', 'AT5G09510' => 'ath', 'AT5G43640' => 'ath', 'AT5G63070' => 'ath', 'ATR0605G315' => 'atr', 'Atru.chr11.175' => 'acertr', 'Atru.chr11.653' => 'acertr', 'Atru.chr3.1616' => 'acertr', 'Atru.chr4.2230' => 'acertr', 'Atru.chr4.2232' => 'acertr', 'Atru.chr5.1598' => 'acertr', 'Atru.chr5.1600' => 'acertr', 'Atru.chr5.2188' => 'acertr', 'AUR62008326' => 'cqu', 'AUR62011922' => 'cqu', 'AUR62011924' => 'cqu', 'AUR62021771' => 'cqu', 'AUR62032237' => 'cqu', 'AUR62032240' => 'cqu', 'BcaB01g05572' => 'bca', 'BcaB02g10337' => 'bca', 'BcaB04g19944' => 'bca', 'BcaB05g21548' => 'bca', 'BcaB05g21549' => 'bca', 'BcaB05g23227' => 'bca', 'BcaB06g26256' => 'bca', 'BcaB06g26257' => 'bca', 'BcaB06g28379' => 'bca', 'BcaC02g11159' => 'bca', 'BcaC03g13258' => 'bca', 'BcaC03g13259' => 'bca', 'BcaC05g24456' => 'bca', 'BcaC05g24457' => 'bca', 'BcaC07g36922' => 'bca', 'BcaC07g36923' => 'bca', 'BcaC07g42050' => 'bca', 'BcaC07g42176' => 'bca', 'BcaC07g42195' => 'bca', 'BcaC07g42196' => 'bca', 'BcaNung06674' => 'bca', 'BolC2t06351H' => 'bol', 'BolC2t06352H' => 'bol', 'BolC3t12993H' => 'bol', 'BolC4t23525H' => 'bol', 'BolC4t27475H' => 'bol', 'BolC5t29025H' => 'bol', 'BolC5t29026H' => 'bol', 'BolC8t46898H' => 'bol', 'BolC8t46899H' => 'bol', 'BolC8t52630H' => 'bol', 'BolC8t52765H' => 'bol', 'BolC9t53824H' => 'bol', 'BraA03t09760Z' => 'bra', 'BraA03t10990Z' => 'bra', 'BraA05t20413Z' => 'bra', 'BraA08t35602Z' => 'bra', 'BraA09t36458Z' => 'bra', 'BraA09t42018Z' => 'bra', 'BraA09t42129Z' => 'bra', 'BraA10t42536Z' => 'bra', 'BraA10t42537Z' => 'bra', 'C01p10690' => 'bna', 'C02p03890' => 'bna', 'C02p03900' => 'bna', 'C03p04620' => 'bna', 'C04p19870' => 'bna', 'C04p59670' => 'bna', 'C05p02460' => 'bna', 'C05p02470' => 'bna', 'C08p00980' => 'bna', 'C08p00990' => 'bna', 'C08p51030' => 'bna', 'C08p52360' => 'bna', 'C09p09120' => 'bna', 'CAN.G19.15' => 'can', 'CAN.G251.10' => 'can', 'CAN.G251.9' => 'can', 'CAN.G398.24' => 'can', 'CAN.G410.32' => 'can', 'CAN.G881.2' => 'can', 'CANSAT01G3025' => 'cansat', 'CANSAT78G1211' => 'cansat', 'CANSAT78G1218' => 'cansat', 'CANSAT78G1521' => 'cansat', 'CANSAT78G1670' => 'cansat', 'CARHR003600' => 'chi', 'CARHR003610' => 'chi', 'CARHR006290' => 'chi', 'CARHR006430' => 'chi', 'CARHR124110' => 'chi', 'CARHR203870' => 'chi', 'CARHR203880' => 'chi', 'CARHR203890' => 'chi', 'CARHR276880' => 'chi', 'Carub.0001s0346' => 'cru', 'Carub.0001s0347' => 'cru', 'Carub.0001s0607' => 'cru', 'Carub.0003s2768' => 'cru', 'Carub.0003s2769' => 'cru', 'Carub.0004s1178' => 'cru', 'Carub.0006s0806' => 'cru', 'Carub.0006s0807' => 'cru', 'Carub.0006s0808' => 'cru', 'Carub.0008s0501' => 'cru', 'Carub.0008s2379' => 'cru', 'Ca_08655_v3' => 'car', 'Ca_08922_v3' => 'car', 'Ca_08923_v3' => 'car', 'Ca_09119_v3' => 'car', 'Ca_09703_v3' => 'car', 'Ca_09705_v3' => 'car', 'Ca_09835_v3' => 'car', 'Ca_26403_v3' => 'car', 'Ca_30719_v3' => 'car', 'CBR_g17958' => 'cbr', 'CBR_g40516' => 'cbr', 'Cc00_g05350' => 'ccan', 'Cc01_g18690' => 'ccan', 'Cc03_g04830' => 'ccan', 'Cc03_g04850' => 'ccan', 'CDE02G4469' => 'cde', 'CDE06G0883' => 'cde', 'CDE06G1295' => 'cde', 'CDE06G1390' => 'cde', 'CDE07G0584' => 'cde', 'CDE07G1084' => 'cde', 'CDE08G1259' => 'cde', 'Cfa002341' => 'cfa', 'Cfa024337' => 'cfa', 'Ciclev10004749m.g' => 'ccl', 'Ciclev10006127m.g' => 'ccl', 'Ciclev10019720m.g' => 'ccl', 'Ciclev10022652m.g' => 'ccl', 'CiPaw.01G190400' => 'cil', 'CiPaw.01G190500' => 'cil', 'CiPaw.02G116400' => 'cil', 'CiPaw.02G116500' => 'cil', 'CiPaw.04G183000' => 'cil', 'CiPaw.04G183300' => 'cil', 'ClCG05G004610' => 'cla', 'ClCG05G004620' => 'cla', 'ClCG06G006730' => 'cla', 'ClCG06G006740' => 'cla', 'ClCG11G003690' => 'cla', 'COL.COLO4_08276' => 'col', 'COL.COLO4_08277' => 'col', 'COL.COLO4_15787' => 'col', 'COL.COLO4_15789' => 'col', 'Cpa.g.c44815' => 'cpa', 'Cpa.g.sc52.144' => 'cpa', 'Cpa.g.sc58.46' => 'cpa', 'Cpa.g.sc58.47' => 'cpa', 'Cre08.g360900' => 'cre', 'CsaV3_2G013030' => 'csa', 'CsaV3_2G013050' => 'csa', 'CsaV3_2G015620' => 'csa', 'CsaV3_3G012590' => 'csa', 'CsaV3_3G012600' => 'csa', 'CSS0001641' => 'camsi', 'CSS0008310' => 'camsi', 'CSS0013011' => 'camsi', 'CSS0017147' => 'camsi', 'CSS0022970' => 'camsi', 'CSS0025655' => 'camsi', 'CSS0028665' => 'camsi', 'CSS0029117' => 'camsi', 'CSS0032024' => 'camsi', 'CSS0039681' => 'camsi', 'CSS0046516' => 'camsi', 'CSS0050307' => 'camsi', 'DCAR_005871' => 'dca', 'DCAR_007342' => 'dca', 'DCAR_024228' => 'dca', 'DCAR_027277' => 'dca', 'DCAR_030718' => 'dca', 'Dinv20287' => 'din', 'Dinv22461' => 'din', 'Dinv22464' => 'din', 'Dinv29912' => 'din', 'Dinv29913' => 'din', 'Dinv34580' => 'din', 'Dinv34582' => 'din', 'Dinv44632' => 'din', 'Duzib052G0266' => 'dzi', 'Duzib133G0907' => 'dzi', 'Duzib133G1034' => 'dzi', 'Duzib138G0207' => 'dzi', 'Duzib138G0491' => 'dzi', 'Duzib151G0812' => 'dzi', 'Duzib151G1166' => 'dzi', 'Duzib168G0192' => 'dzi', 'Duzib211G0077' => 'dzi', 'Duzib212G0429' => 'dzi', 'Duzib212G0472' => 'dzi', 'ECA233G2617' => 'eca', 'ECA236G4188' => 'eca', 'ECA240G0936' => 'eca', 'ECA240G1129' => 'eca', 'ECA247G0623' => 'eca', 'EL10Ac5g10451' => 'bvu', 'EL10Ac5g10453' => 'bvu', 'EL10Ac5g10894' => 'bvu', 'Eucgr.H00192' => 'egr', 'Eucgr.H00193' => 'egr', 'Eucgr.H00194' => 'egr', 'Eucgr.J01562' => 'egr', 'Eucgr.K03301' => 'egr', 'FAN02G0632' => 'fan', 'FAN05G5378' => 'fan', 'FAN09G3247' => 'fan', 'FAN12G0435' => 'fan', 'FAN12G2426' => 'fan', 'FAN14G1707' => 'fan', 'FAN14G4725' => 'fan', 'FAN15G2071' => 'fan', 'FAN17G3065' => 'fan', 'FAN19G1376' => 'fan', 'FAN20G0354' => 'fan', 'FAN20G2429' => 'fan', 'FAN20G2658' => 'fan', 'FAN24G2343' => 'fan', 'FAN27G2362' => 'fan', 'FAN28G1765' => 'fan', 'FvH4_1g16020' => 'fve', 'FvH4_2g04890' => 'fve', 'FvH4_2g22270' => 'fve', 'FvH4_4g02630' => 'fve', 'FvH4_4g02640' => 'fve', 'FvH4_6g02650' => 'fve', 'Glyma.02G140600' => 'gma', 'Glyma.03G159900' => 'gma', 'Glyma.05G234800' => 'gma', 'Glyma.07G269600' => 'gma', 'Glyma.08G042300' => 'gma', 'Glyma.10G033500' => 'gma', 'Glyma.10G185200' => 'gma', 'Glyma.17G004300' => 'gma', 'Glyma.19G161900' => 'gma', 'Glyma.20G205100' => 'gma', 'Glyma.20G205200' => 'gma', 'Gohir.A01G139101' => 'ghi', 'Gohir.A02G035600' => 'ghi', 'Gohir.A02G117901' => 'ghi', 'Gohir.A07G210100' => 'ghi', 'Gohir.A07G210200' => 'ghi', 'Gohir.A08G061100' => 'ghi', 'Gohir.A09G223000' => 'ghi', 'Gohir.A09G223100' => 'ghi', 'Gohir.A10G113900' => 'ghi', 'Gohir.A10G114000' => 'ghi', 'Gohir.D02G042300' => 'ghi', 'Gohir.D07G216100' => 'ghi', 'Gohir.D07G216200' => 'ghi', 'Gohir.D08G070400' => 'ghi', 'Gohir.D09G225000' => 'ghi', 'Gohir.D09G225100' => 'ghi', 'Gohir.D10G152300' => 'ghi', 'Gohir.D10G153200' => 'ghi', 'Gohir.D11G133701' => 'ghi', 'Gorai.004G074100' => 'gra', 'Gorai.005G046800' => 'gra', 'Gorai.006G246500' => 'gra', 'Gorai.006G246600' => 'gra', 'Gorai.007G142900' => 'gra', 'Gorai.011G171000' => 'gra', 'Gorai.011G171100' => 'gra', 'Gorai.013G104300' => 'gra', 'Gorai.013G104400' => 'gra', 'GSVIVG01000754001' => 'vvi', 'GSVIVG01000756001' => 'vvi', 'GSVIVG01010903001' => 'vvi', 'GSVIVG01017623001' => 'vvi', 'GSVIVG01018113001' => 'vvi', 'GSVIVG01018116001' => 'vvi', 'GSVIVG01018118001' => 'vvi', 'HanXRQChr03g0076211' => 'han', 'HanXRQChr03g0092431' => 'han', 'HanXRQChr03g0092441' => 'han', 'HanXRQChr03g0092591' => 'han', 'HanXRQChr03g0092671' => 'han', 'HanXRQChr03g0092681' => 'han', 'HanXRQChr03g0092691' => 'han', 'HanXRQChr03g0092701' => 'han', 'HanXRQChr03g0092721' => 'han', 'HanXRQChr03g0092731' => 'han', 'HanXRQChr04g0113681' => 'han', 'HanXRQChr10g0281371' => 'han', 'HanXRQChr11g0337141' => 'han', 'HanXRQChr13g0424521' => 'han', 'HanXRQChr13g0424531' => 'han', 'HanXRQChr13g0424541' => 'han', 'HanXRQChr16g0498221' => 'han', 'Haze_04377' => 'cav', 'Haze_11298' => 'cav', 'Haze_24547' => 'cav', 'Haze_24550' => 'cav', 'Haze_26587' => 'cav', 'Hma1.2p1_0650F.1_g195410' => 'hma', 'Hma1.2p1_0893F.1_g233470' => 'hma', 'HPP92_006508' => 'vpl', 'HPP92_024780' => 'vpl', 'Hund02688' => 'sun', 'Hund09380' => 'sun', 'Hund09381' => 'sun', 'Hund09832' => 'sun', 'Hund09833' => 'sun', 'Hund11351' => 'sun', 'Hund11513' => 'sun', 'Lalb_Chr06g0162591' => 'lal', 'Lalb_Chr06g0162601' => 'lal', 'Lalb_Chr06g0169321' => 'lal', 'Lalb_Chr09g0330951' => 'lal', 'Lalb_Chr16g0387631' => 'lal', 'Lalb_Chr21g0306241' => 'lal', 'Lalb_Chr25g0290051' => 'lal', 'Lalb_Chr25g0290061' => 'lal', 'Lalb_Chr25g0290071' => 'lal', 'Lj1g0003876' => 'lja', 'Lj1P1207T36' => 'lonja', 'Lj2C1156G12' => 'lonja', 'Lj3A793G39' => 'lonja', 'Lj3C580G2' => 'lonja', 'Lj3C780G2' => 'lonja', 'Lj3C780T4' => 'lonja', 'Lj3C793G9' => 'lonja', 'Lj4g0012960' => 'lja', 'Lj5g0021252' => 'lja', 'Lj5g0021484' => 'lja', 'Lj5g0024528' => 'lja', 'Lj6A399T12' => 'lonja', 'Lj6A656G65' => 'lonja', 'Lsat_1_v5_gn_3_125500' => 'lsa', 'Lsat_1_v5_gn_3_125540' => 'lsa', 'Lsat_1_v5_gn_5_72701' => 'lsa', 'Lsat_1_v5_gn_8_91560' => 'lsa', 'Lsat_1_v5_gn_9_9640' => 'lsa', 'Manes.01G200600' => 'mes', 'Manes.01G200700' => 'mes', 'Manes.03G168900' => 'mes', 'Manes.03G169000' => 'mes', 'Manes.05G085801' => 'mes', 'Manes.05G086200' => 'mes', 'Manes.15G036700' => 'mes', 'Manes.15G036900' => 'mes', 'Mapoly0004s0172' => 'mpo', 'Mapoly0023s0001' => 'mpo', 'Mapoly0142s0012' => 'mpo', 'MBI01_g32854_MAGBIO' => 'mbi', 'MBI11_g24427_MAGBIO' => 'mbi', 'MBI11_g47319_MAGBIO' => 'mbi', 'MCO01G433' => 'mco', 'MD00G1187800' => 'mdo', 'MD04G1226500' => 'mdo', 'MD05G1203900' => 'mdo', 'MD10G1191100' => 'mdo', 'MD12G1243500' => 'mdo', 'MD13G1207000' => 'mdo', 'MD13G1207100' => 'mdo', 'MD16G1208600' => 'mdo', 'Medtr1g050352' => 'mtr', 'Medtr1g070385' => 'mtr', 'Medtr1g070450' => 'mtr', 'Medtr1g075200' => 'mtr', 'Medtr1g075250' => 'mtr', 'Medtr1g075260' => 'mtr', 'Medtr1g475250' => 'mtr', 'Medtr4g075450' => 'mtr', 'Medtr7g096300' => 'mtr', 'Medtr8g105110' => 'mtr', 'MELO3C006470.2' => 'cme', 'MELO3C006471.2' => 'cme', 'MELO3C020772.2' => 'cme', 'MELO3C026780.2' => 'cme', 'MELO3C026781.2' => 'cme', 'Migut.D00390' => 'egut', 'Migut.G00435' => 'egut', 'Migut.G00436' => 'egut', 'Migut.G00718' => 'egut', 'MSTRG.21891' => 'ama', 'MSTRG.26910' => 'ama', 'MSTRG.4099' => 'ama', 'MSTRG.9925' => 'ama', 'Nitab4.5_0000165g0010' => 'nta', 'Nitab4.5_0000209g0180' => 'nta', 'Nitab4.5_0000244g0440' => 'nta', 'Nitab4.5_0000525g0220' => 'nta', 'Nitab4.5_0001597g0020' => 'nta', 'Nitab4.5_0001878g0040' => 'nta', 'Nitab4.5_0001878g0060' => 'nta', 'Nitab4.5_0002838g0100' => 'nta', 'Nitab4.5_0002838g0120' => 'nta', 'Nitab4.5_0004798g0030' => 'nta', 'Nitab4.5_0005420g0010' => 'nta', 'Nitab4.5_0005507g0010' => 'nta', 'Nitab4.5_0005574g0020' => 'nta', 'Nitab4.5_0005838g0010' => 'nta', 'Nitab4.5_0010580g0020' => 'nta', 'Nn1g02599' => 'nnu', 'Nn1g02608' => 'nnu', 'Nn3g17742' => 'nnu', 'Nn3g19534' => 'nnu', 'Nn3g19535' => 'nnu', 'Oeu008790.1' => 'oeu', 'Oeu008792.1' => 'oeu', 'Oeu032590.1' => 'oeu', 'Oeu035349.1' => 'oeu', 'Oeu049791.1' => 'oeu', 'Os01g0774500' => 'osa', 'Os03g0628800' => 'osa', 'Os03g0798600' => 'osa', 'Os05g0508800' => 'osa', 'Peaxi162Scf00036g02018' => 'pax', 'Peaxi162Scf00578g00032' => 'pax', 'Peaxi162Scf00578g00317' => 'pax', 'Peaxi162Scf00785g00114' => 'pax', 'Peaxi162Scf00813g00119' => 'pax', 'Peaxi162Scf00906g00227' => 'pax', 'PGR004G0875' => 'pgr', 'PGR004G2424' => 'pgr', 'PGR031G1239' => 'pgr', 'PGR031G2474' => 'pgr', 'PGR044G0423' => 'pgr', 'PGSC0003DMG400001128' => 'stu', 'PGSC0003DMG400007336' => 'stu', 'PGSC0003DMG400016318' => 'stu', 'PGSC0003DMG400016319' => 'stu', 'PGSC0003DMG400018074' => 'stu', 'Phvul.001G157700' => 'pvu', 'Phvul.002G148550' => 'pvu', 'Phvul.002G320200' => 'pvu', 'Phvul.003G089200' => 'pvu', 'Phvul.007G126000' => 'pvu', 'Phvul.007G126100' => 'pvu', 'Phvul.007G178000' => 'pvu', 'Phvul.007G178200' => 'pvu', 'Potri.002G043000' => 'ptr', 'Potri.002G043200' => 'ptr', 'Potri.003G123750' => 'ptr', 'Potri.005G055401' => 'ptr', 'Potri.005G219700' => 'ptr', 'Potri.005G220000' => 'ptr', 'Potri.008G161901' => 'ptr', 'Potri.008G162000' => 'ptr', 'Potri.008G162400' => 'ptr', 'Potri.010G076900' => 'ptr', 'Pp3c12_9180' => 'ppa', 'Pp3c13_19770' => 'ppa', 'Pp3c14_22950' => 'ppa', 'Pp3c16_12160' => 'ppa', 'Pp3c27_7820' => 'ppa', 'Pp3c2_3490' => 'ppa', 'Pp3c3_23700' => 'ppa', 'Pp3c3_36520' => 'ppa', 'Pp3c4_15250' => 'ppa', 'PRCOL_00007002' => 'pco', 'Prupe.1G030600' => 'ppe', 'Prupe.1G030700' => 'ppe', 'Prupe.6G345200' => 'ppe', 'Prupe.8G230300' => 'ppe', 'Prupe.8G230500' => 'ppe', 'Psat3g059600' => 'psa', 'Psat5g200920' => 'psa', 'Psat6g056440' => 'psa', 'Psat6g057360' => 'psa', 'Psat6g134120' => 'psa', 'Psat6g134160' => 'psa', 'Psat7g008640' => 'psa', 'Psat7g185240' => 'psa', 'PSO017G1330' => 'pso', 'PSO063G6097' => 'pso', 'PSO170G0835' => 'pso', 'PSO170G2499' => 'pso', 'PSO210G5058' => 'pso', 'PSO210G6154' => 'pso', 'PSO585G0031' => 'pso', 'PSO832G0264' => 'pso', 'PSO832G4288' => 'pso', 'QL03p027355' => 'qlo', 'QL03p027430' => 'qlo', 'QL04p081380' => 'qlo', 'QL06p015642' => 'qlo', 'QL06p015650' => 'qlo', 'QL06p015686' => 'qlo', 'QL12p042927' => 'qlo', 'QL93p1863_0035' => 'qlo', 'RcHm_v2.0_Chr3g0450581' => 'rch', 'RcHm_v2.0_Chr4g0390371' => 'rch', 'RcHm_v2.0_Chr4g0390381' => 'rch', 'RcHm_v2.0_Chr4g0390491' => 'rch', 'RcHm_v2.0_Chr4g0390501' => 'rch', 'RcHm_v2.0_Chr6g0289231' => 'rch', 'Rhsim04G0190400' => 'rsi', 'Rhsim04G0190500' => 'rsi', 'Rhsim04G0190600' => 'rsi', 'Rhsim13G0031400' => 'rsi', 'Rhsim13G0165600' => 'rsi', 'RhsimUnG0114600' => 'rsi', 'RhsimUnG0114700' => 'rsi', 'Sabra02G0034800' => 'sbr', 'Sabra02G0035100' => 'sbr', 'Sabra05G0168600' => 'sbr', 'Sabra05G0168800' => 'sbr', 'Sabra08G0123700' => 'sbr', 'Sabra10G0031900' => 'sbr', 'Sabra13G0039000' => 'sbr', 'SalBow2G0782' => 'sbo', 'SalBow2G1403' => 'sbo', 'SalBow4G0074' => 'sbo', 'SalBow4G2635' => 'sbo', 'SalBow5G3010' => 'sbo', 'Sc05g0000870' => 'sci', 'Sc05g0000890' => 'sci', 'Sc13g0005000' => 'sci', 'Sc13g0005030' => 'sci', 'Sc19g0003790' => 'sci', 'Sc19g0003800' => 'sci', 'Sed0003467' => 'sed', 'Sed0009355' => 'sed', 'Sed0009894' => 'sed', 'Sed0011972' => 'sed', 'Sed0021483' => 'sed', 'Sed0021750' => 'sed', 'Sed0026279' => 'sed', 'SEGI_05312' => 'sgi', 'SEGI_10112' => 'sgi', 'SEGI_15835' => 'sgi', 'SEGI_30386' => 'sgi', 'SEGI_34122' => 'sgi', 'SEGI_35063' => 'sgi', 'SGA_v2.0_scaffold101G29794' => 'sas', 'SGA_v2.0_scaffold1G00573' => 'sas', 'SGA_v2.0_scaffold79G25637' => 'sas', 'SGA_v2.0_scaffold88G27283' => 'sas', 'SGA_v2.0_scaffold88G27285' => 'sas', 'SGA_v2.0_scaffold88G27331' => 'sas', 'SHI09937' => 'shi', 'SMO119G0302' => 'smo', 'SMO137G0231' => 'smo', 'SMO367G1151' => 'smo', 'Solyc02g082000.3' => 'sly', 'Solyc06g031670.3' => 'sly', 'Solyc06g053810.3' => 'sly', 'Solyc07g025457.1' => 'sly', 'Solyc08g059740.1' => 'sly', 'Solyc08g059750.3' => 'sly', 'Solyc09g083370.3' => 'sly', 'Solyc12g038950.3' => 'sly', 'Sopen02g026630' => 'spe', 'Sopen06g018930' => 'spe', 'Sopen06g018940' => 'spe', 'Sopen08g009460' => 'spe', 'Sopen09g032290' => 'spe', 'Sp1g03080' => 'spa', 'Sp1g03090' => 'spa', 'Sp1g05480' => 'spa', 'Sp2g07860' => 'spa', 'Sp2g08430' => 'spa', 'Sp2g08440' => 'spa', 'Sp2g26200' => 'spa', 'Sp4g13170' => 'spa', 'Sp6g33840' => 'spa', 'SpUn1204_0010' => 'spa', 'TAR365G0908' => 'tar', 'TAR381G1270' => 'tar', 'TAR381G1651' => 'tar', 'TAR625G1131' => 'tar', 'TAR633G0962' => 'tar', 'TAR633G1729' => 'tar', 'TAR633G1864' => 'tar', 'TAR636G0221' => 'tar', 'TAR636G0314' => 'tar', 'TAR636G3202' => 'tar', 'THA.LOC104800805' => 'tha', 'THA.LOC104801096' => 'tha', 'THA.LOC104801555' => 'tha', 'THA.LOC104808491' => 'tha', 'THA.LOC104808595' => 'tha', 'THA.LOC104815985' => 'tha', 'THA.LOC104822250' => 'tha', 'THA.LOC104826071' => 'tha', 'Thecc.01G265200' => 'tca', 'Thecc.01G265300' => 'tca', 'Thecc.01G265700' => 'tca', 'Thecc.03G109100' => 'tca', 'Thecc.04G245900' => 'tca', 'Thecc.04G246000' => 'tca', 'Thhalv10003334m.g' => 'esa', 'Thhalv10005508m.g' => 'esa', 'Thhalv10005643m.g' => 'esa', 'Thhalv10007316m.g' => 'esa', 'Thhalv10009006m.g' => 'esa', 'Thhalv10009309m.g' => 'esa', 'Thhalv10014917m.g' => 'esa', 'Thhalv10014919m.g' => 'esa', 'Thhalv10015393m.g' => 'esa', 'Thhalv10016515m.g' => 'esa', 'Thhalv10029242m.g' => 'esa', 'TPR.G16654' => 'tpr', 'TPR.G20589' => 'tpr', 'TPR.G23029' => 'tpr', 'TPR.G27731' => 'tpr', 'TPR.G28889' => 'tpr', 'TPR.G28899' => 'tpr', 'TPR.G30846' => 'tpr', 'TPR.G5452' => 'tpr', 'TPR.G5713' => 'tpr', 'TPR.G9046' => 'tpr', 'TPR.G9061' => 'tpr', 'TWI09G1075' => 'twi', 'TWI12G0806' => 'twi', 'TWI18G0108' => 'twi', 'TWI53G1361' => 'twi', 'TWI73G0185' => 'twi', 'TWI73G0427' => 'twi', 'unitig_37.g12001' => 'ugi', 'unitig_747.g21660' => 'ugi', 'unitig_748.g7232' => 'ugi', 'unitig_748.g7315' => 'ugi', 'unitig_85.g27262' => 'ugi', 'unitig_92.g28220' => 'ugi', 'vmacro02632' => 'vma', 'vmacro08410' => 'vma', 'vmacro08411' => 'vma', 'vmacro15407' => 'vma', 'VMungo0251G3619' => 'vmu', 'VMungo0720G1204' => 'vmu', 'VMungo0720G1918' => 'vmu', 'VMungo0720G2387' => 'vmu', 'VMungo0720G2961' => 'vmu', 'VMungo1215G2154' => 'vmu', 'VMungo1383G2411' => 'vmu', 'Zm00001eb051130' => 'zma', 'Zm00001eb116830' => 'zma', 'Zm00001eb116850' => 'zma', 'Zm00001eb151740' => 'zma', 'Zm00001eb292360' => 'zma', 'Zm00001eb301640' => 'zma' ) $gf_id = 'HOM05D000856' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000856' ) $data_identifier = 'HOM05D000856' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 13, 'ath' => (int) 10, 'atr' => (int) 1, 'acertr' => (int) 8, 'cqu' => (int) 6, 'bca' => (int) 21, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 11, 'car' => (int) 9, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 8, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 5, 'fan' => (int) 16, 'fve' => (int) 6, 'gma' => (int) 11, 'ghi' => (int) 19, 'gra' => (int) 9, 'vvi' => (int) 7, 'han' => (int) 17, 'cav' => (int) 5, 'hma' => (int) 2, 'vpl' => (int) 2, 'sun' => (int) 7, 'lal' => (int) 9, 'lja' => (int) 5, 'lonja' => (int) 9, 'lsa' => (int) 5, 'mes' => (int) 8, 'mpo' => (int) 3, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 10, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 15, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 9, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 9, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 6, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 5, 'spa' => (int) 10, 'tar' => (int) 10, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 11, 'tpr' => (int) 11, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 4, 'vmu' => (int) 7, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb301640' $species_info = array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ) $local_species = 'chi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000856', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p00010' => 'bna', 'A03p04160' => 'bna', 'A03p17160' => 'bna', 'A04p23370' => 'bna', 'A05p14860' => 'bna', 'A08p37020' => 'bna', 'A09p08050' => 'bna', 'A09p66800' => 'bna', 'A09p67940' => 'bna', 'A10p02680' => 'bna', 'A10p05320' => 'bna', 'Aa31LG1G20560' => 'aar', 'Aa31LG1G20610' => 'aar', 'Aa31LG1G7810' => 'aar', 'Aa31LG5G3590' => 'aar', 'Aa31LG5G6140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3819' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4683' => 'aag', 'Actinidia04480' => 'ach', 'Actinidia05466' => 'ach', 'Actinidia08445' => 'ach', 'Actinidia21170' => 'ach', 'Actinidia24812' => 'ach', 'Actinidia24951' => 'ach', 'Actinidia40088' => 'ach', 'Ah.02g111660' => 'amhyb', 'Ah.11g048900' => 'amhyb', 'Ah.11g049910' => 'amhyb', 'AL1G13870' => 'aly', 'AL1G13880' => 'aly', 'AL1G16760' => 'aly', 'AL390U10020' => 'aly', 'AL4G25520' => 'aly', 'AL6G19890' => 'aly', 'AL6G19900' => 'aly', 'AL6G19910' => 'aly', 'AL8G40100' => 'aly', 'Aqoxy2G03562' => 'aox', 'Aqoxy5G00316' => 'aox', 'Aqoxy5G00926' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1628KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1H403S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2FU6SJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.882I6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8YRY2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YN1SN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AF70II' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZA8L1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F916KL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHRD8H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KTZ8QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S22EMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8M29T' => 'arhy', 'AT1G04270' => 'ath', 'AT1G04280' => 'ath', 'AT1G06750' => 'ath', 'AT1G33850' => 'ath', 'AT2G30630' => 'ath', 'AT5G09490' => 'ath', 'AT5G09500' => 'ath', 'AT5G09510' => 'ath', 'AT5G43640' => 'ath', 'AT5G63070' => 'ath', 'ATR0605G315' => 'atr', 'Atru.chr11.175' => 'acertr', 'Atru.chr11.653' => 'acertr', 'Atru.chr3.1616' => 'acertr', 'Atru.chr4.2230' => 'acertr', 'Atru.chr4.2232' => 'acertr', 'Atru.chr5.1598' => 'acertr', 'Atru.chr5.1600' => 'acertr', 'Atru.chr5.2188' => 'acertr', 'AUR62008326' => 'cqu', 'AUR62011922' => 'cqu', 'AUR62011924' => 'cqu', 'AUR62021771' => 'cqu', 'AUR62032237' => 'cqu', 'AUR62032240' => 'cqu', 'BcaB01g05572' => 'bca', 'BcaB02g10337' => 'bca', 'BcaB04g19944' => 'bca', 'BcaB05g21548' => 'bca', 'BcaB05g21549' => 'bca', 'BcaB05g23227' => 'bca', 'BcaB06g26256' => 'bca', 'BcaB06g26257' => 'bca', 'BcaB06g28379' => 'bca', 'BcaC02g11159' => 'bca', 'BcaC03g13258' => 'bca', 'BcaC03g13259' => 'bca', 'BcaC05g24456' => 'bca', 'BcaC05g24457' => 'bca', 'BcaC07g36922' => 'bca', 'BcaC07g36923' => 'bca', 'BcaC07g42050' => 'bca', 'BcaC07g42176' => 'bca', 'BcaC07g42195' => 'bca', 'BcaC07g42196' => 'bca', 'BcaNung06674' => 'bca', 'BolC2t06351H' => 'bol', 'BolC2t06352H' => 'bol', 'BolC3t12993H' => 'bol', 'BolC4t23525H' => 'bol', 'BolC4t27475H' => 'bol', 'BolC5t29025H' => 'bol', 'BolC5t29026H' => 'bol', 'BolC8t46898H' => 'bol', 'BolC8t46899H' => 'bol', 'BolC8t52630H' => 'bol', 'BolC8t52765H' => 'bol', 'BolC9t53824H' => 'bol', 'BraA03t09760Z' => 'bra', 'BraA03t10990Z' => 'bra', 'BraA05t20413Z' => 'bra', 'BraA08t35602Z' => 'bra', 'BraA09t36458Z' => 'bra', 'BraA09t42018Z' => 'bra', 'BraA09t42129Z' => 'bra', 'BraA10t42536Z' => 'bra', 'BraA10t42537Z' => 'bra', 'C01p10690' => 'bna', 'C02p03890' => 'bna', 'C02p03900' => 'bna', 'C03p04620' => 'bna', 'C04p19870' => 'bna', 'C04p59670' => 'bna', 'C05p02460' => 'bna', 'C05p02470' => 'bna', 'C08p00980' => 'bna', 'C08p00990' => 'bna', 'C08p51030' => 'bna', 'C08p52360' => 'bna', 'C09p09120' => 'bna', 'CAN.G19.15' => 'can', 'CAN.G251.10' => 'can', 'CAN.G251.9' => 'can', 'CAN.G398.24' => 'can', 'CAN.G410.32' => 'can', 'CAN.G881.2' => 'can', 'CANSAT01G3025' => 'cansat', 'CANSAT78G1211' => 'cansat', 'CANSAT78G1218' => 'cansat', 'CANSAT78G1521' => 'cansat', 'CANSAT78G1670' => 'cansat', 'CARHR003600' => 'chi', 'CARHR003610' => 'chi', 'CARHR006290' => 'chi', 'CARHR006430' => 'chi', 'CARHR124110' => 'chi', 'CARHR203870' => 'chi', 'CARHR203880' => 'chi', 'CARHR203890' => 'chi', 'CARHR276880' => 'chi', 'Carub.0001s0346' => 'cru', 'Carub.0001s0347' => 'cru', 'Carub.0001s0607' => 'cru', 'Carub.0003s2768' => 'cru', 'Carub.0003s2769' => 'cru', 'Carub.0004s1178' => 'cru', 'Carub.0006s0806' => 'cru', 'Carub.0006s0807' => 'cru', 'Carub.0006s0808' => 'cru', 'Carub.0008s0501' => 'cru', 'Carub.0008s2379' => 'cru', 'Ca_08655_v3' => 'car', 'Ca_08922_v3' => 'car', 'Ca_08923_v3' => 'car', 'Ca_09119_v3' => 'car', 'Ca_09703_v3' => 'car', 'Ca_09705_v3' => 'car', 'Ca_09835_v3' => 'car', 'Ca_26403_v3' => 'car', 'Ca_30719_v3' => 'car', 'CBR_g17958' => 'cbr', 'CBR_g40516' => 'cbr', 'Cc00_g05350' => 'ccan', 'Cc01_g18690' => 'ccan', 'Cc03_g04830' => 'ccan', 'Cc03_g04850' => 'ccan', 'CDE02G4469' => 'cde', 'CDE06G0883' => 'cde', 'CDE06G1295' => 'cde', 'CDE06G1390' => 'cde', 'CDE07G0584' => 'cde', 'CDE07G1084' => 'cde', 'CDE08G1259' => 'cde', 'Cfa002341' => 'cfa', 'Cfa024337' => 'cfa', 'Ciclev10004749m.g' => 'ccl', 'Ciclev10006127m.g' => 'ccl', 'Ciclev10019720m.g' => 'ccl', 'Ciclev10022652m.g' => 'ccl', 'CiPaw.01G190400' => 'cil', 'CiPaw.01G190500' => 'cil', 'CiPaw.02G116400' => 'cil', 'CiPaw.02G116500' => 'cil', 'CiPaw.04G183000' => 'cil', 'CiPaw.04G183300' => 'cil', 'ClCG05G004610' => 'cla', 'ClCG05G004620' => 'cla', 'ClCG06G006730' => 'cla', 'ClCG06G006740' => 'cla', 'ClCG11G003690' => 'cla', 'COL.COLO4_08276' => 'col', 'COL.COLO4_08277' => 'col', 'COL.COLO4_15787' => 'col', 'COL.COLO4_15789' => 'col', 'Cpa.g.c44815' => 'cpa', 'Cpa.g.sc52.144' => 'cpa', 'Cpa.g.sc58.46' => 'cpa', 'Cpa.g.sc58.47' => 'cpa', 'Cre08.g360900' => 'cre', 'CsaV3_2G013030' => 'csa', 'CsaV3_2G013050' => 'csa', 'CsaV3_2G015620' => 'csa', 'CsaV3_3G012590' => 'csa', 'CsaV3_3G012600' => 'csa', 'CSS0001641' => 'camsi', 'CSS0008310' => 'camsi', 'CSS0013011' => 'camsi', 'CSS0017147' => 'camsi', 'CSS0022970' => 'camsi', 'CSS0025655' => 'camsi', 'CSS0028665' => 'camsi', 'CSS0029117' => 'camsi', 'CSS0032024' => 'camsi', 'CSS0039681' => 'camsi', 'CSS0046516' => 'camsi', 'CSS0050307' => 'camsi', 'DCAR_005871' => 'dca', 'DCAR_007342' => 'dca', 'DCAR_024228' => 'dca', 'DCAR_027277' => 'dca', 'DCAR_030718' => 'dca', 'Dinv20287' => 'din', 'Dinv22461' => 'din', 'Dinv22464' => 'din', 'Dinv29912' => 'din', 'Dinv29913' => 'din', 'Dinv34580' => 'din', 'Dinv34582' => 'din', 'Dinv44632' => 'din', 'Duzib052G0266' => 'dzi', 'Duzib133G0907' => 'dzi', 'Duzib133G1034' => 'dzi', 'Duzib138G0207' => 'dzi', 'Duzib138G0491' => 'dzi', 'Duzib151G0812' => 'dzi', 'Duzib151G1166' => 'dzi', 'Duzib168G0192' => 'dzi', 'Duzib211G0077' => 'dzi', 'Duzib212G0429' => 'dzi', 'Duzib212G0472' => 'dzi', 'ECA233G2617' => 'eca', 'ECA236G4188' => 'eca', 'ECA240G0936' => 'eca', 'ECA240G1129' => 'eca', 'ECA247G0623' => 'eca', 'EL10Ac5g10451' => 'bvu', 'EL10Ac5g10453' => 'bvu', 'EL10Ac5g10894' => 'bvu', 'Eucgr.H00192' => 'egr', 'Eucgr.H00193' => 'egr', 'Eucgr.H00194' => 'egr', 'Eucgr.J01562' => 'egr', 'Eucgr.K03301' => 'egr', 'FAN02G0632' => 'fan', 'FAN05G5378' => 'fan', 'FAN09G3247' => 'fan', 'FAN12G0435' => 'fan', 'FAN12G2426' => 'fan', 'FAN14G1707' => 'fan', 'FAN14G4725' => 'fan', 'FAN15G2071' => 'fan', 'FAN17G3065' => 'fan', 'FAN19G1376' => 'fan', 'FAN20G0354' => 'fan', 'FAN20G2429' => 'fan', 'FAN20G2658' => 'fan', 'FAN24G2343' => 'fan', 'FAN27G2362' => 'fan', 'FAN28G1765' => 'fan', 'FvH4_1g16020' => 'fve', 'FvH4_2g04890' => 'fve', 'FvH4_2g22270' => 'fve', 'FvH4_4g02630' => 'fve', 'FvH4_4g02640' => 'fve', 'FvH4_6g02650' => 'fve', 'Glyma.02G140600' => 'gma', 'Glyma.03G159900' => 'gma', 'Glyma.05G234800' => 'gma', 'Glyma.07G269600' => 'gma', 'Glyma.08G042300' => 'gma', 'Glyma.10G033500' => 'gma', 'Glyma.10G185200' => 'gma', 'Glyma.17G004300' => 'gma', 'Glyma.19G161900' => 'gma', 'Glyma.20G205100' => 'gma', 'Glyma.20G205200' => 'gma', 'Gohir.A01G139101' => 'ghi', 'Gohir.A02G035600' => 'ghi', 'Gohir.A02G117901' => 'ghi', 'Gohir.A07G210100' => 'ghi', 'Gohir.A07G210200' => 'ghi', 'Gohir.A08G061100' => 'ghi', 'Gohir.A09G223000' => 'ghi', 'Gohir.A09G223100' => 'ghi', 'Gohir.A10G113900' => 'ghi', 'Gohir.A10G114000' => 'ghi', 'Gohir.D02G042300' => 'ghi', 'Gohir.D07G216100' => 'ghi', 'Gohir.D07G216200' => 'ghi', 'Gohir.D08G070400' => 'ghi', 'Gohir.D09G225000' => 'ghi', 'Gohir.D09G225100' => 'ghi', 'Gohir.D10G152300' => 'ghi', 'Gohir.D10G153200' => 'ghi', 'Gohir.D11G133701' => 'ghi', 'Gorai.004G074100' => 'gra', 'Gorai.005G046800' => 'gra', 'Gorai.006G246500' => 'gra', 'Gorai.006G246600' => 'gra', 'Gorai.007G142900' => 'gra', 'Gorai.011G171000' => 'gra', 'Gorai.011G171100' => 'gra', 'Gorai.013G104300' => 'gra', 'Gorai.013G104400' => 'gra', 'GSVIVG01000754001' => 'vvi', 'GSVIVG01000756001' => 'vvi', 'GSVIVG01010903001' => 'vvi', 'GSVIVG01017623001' => 'vvi', 'GSVIVG01018113001' => 'vvi', 'GSVIVG01018116001' => 'vvi', 'GSVIVG01018118001' => 'vvi', 'HanXRQChr03g0076211' => 'han', 'HanXRQChr03g0092431' => 'han', 'HanXRQChr03g0092441' => 'han', 'HanXRQChr03g0092591' => 'han', 'HanXRQChr03g0092671' => 'han', 'HanXRQChr03g0092681' => 'han', 'HanXRQChr03g0092691' => 'han', 'HanXRQChr03g0092701' => 'han', 'HanXRQChr03g0092721' => 'han', 'HanXRQChr03g0092731' => 'han', 'HanXRQChr04g0113681' => 'han', 'HanXRQChr10g0281371' => 'han', 'HanXRQChr11g0337141' => 'han', 'HanXRQChr13g0424521' => 'han', 'HanXRQChr13g0424531' => 'han', 'HanXRQChr13g0424541' => 'han', 'HanXRQChr16g0498221' => 'han', 'Haze_04377' => 'cav', 'Haze_11298' => 'cav', 'Haze_24547' => 'cav', 'Haze_24550' => 'cav', 'Haze_26587' => 'cav', 'Hma1.2p1_0650F.1_g195410' => 'hma', 'Hma1.2p1_0893F.1_g233470' => 'hma', 'HPP92_006508' => 'vpl', 'HPP92_024780' => 'vpl', 'Hund02688' => 'sun', 'Hund09380' => 'sun', 'Hund09381' => 'sun', 'Hund09832' => 'sun', 'Hund09833' => 'sun', 'Hund11351' => 'sun', 'Hund11513' => 'sun', 'Lalb_Chr06g0162591' => 'lal', 'Lalb_Chr06g0162601' => 'lal', 'Lalb_Chr06g0169321' => 'lal', 'Lalb_Chr09g0330951' => 'lal', 'Lalb_Chr16g0387631' => 'lal', 'Lalb_Chr21g0306241' => 'lal', 'Lalb_Chr25g0290051' => 'lal', 'Lalb_Chr25g0290061' => 'lal', 'Lalb_Chr25g0290071' => 'lal', 'Lj1g0003876' => 'lja', 'Lj1P1207T36' => 'lonja', 'Lj2C1156G12' => 'lonja', 'Lj3A793G39' => 'lonja', 'Lj3C580G2' => 'lonja', 'Lj3C780G2' => 'lonja', 'Lj3C780T4' => 'lonja', 'Lj3C793G9' => 'lonja', 'Lj4g0012960' => 'lja', 'Lj5g0021252' => 'lja', 'Lj5g0021484' => 'lja', 'Lj5g0024528' => 'lja', 'Lj6A399T12' => 'lonja', 'Lj6A656G65' => 'lonja', 'Lsat_1_v5_gn_3_125500' => 'lsa', 'Lsat_1_v5_gn_3_125540' => 'lsa', 'Lsat_1_v5_gn_5_72701' => 'lsa', 'Lsat_1_v5_gn_8_91560' => 'lsa', 'Lsat_1_v5_gn_9_9640' => 'lsa', 'Manes.01G200600' => 'mes', 'Manes.01G200700' => 'mes', 'Manes.03G168900' => 'mes', 'Manes.03G169000' => 'mes', 'Manes.05G085801' => 'mes', 'Manes.05G086200' => 'mes', 'Manes.15G036700' => 'mes', 'Manes.15G036900' => 'mes', 'Mapoly0004s0172' => 'mpo', 'Mapoly0023s0001' => 'mpo', 'Mapoly0142s0012' => 'mpo', 'MBI01_g32854_MAGBIO' => 'mbi', 'MBI11_g24427_MAGBIO' => 'mbi', 'MBI11_g47319_MAGBIO' => 'mbi', 'MCO01G433' => 'mco', 'MD00G1187800' => 'mdo', 'MD04G1226500' => 'mdo', 'MD05G1203900' => 'mdo', 'MD10G1191100' => 'mdo', 'MD12G1243500' => 'mdo', 'MD13G1207000' => 'mdo', 'MD13G1207100' => 'mdo', 'MD16G1208600' => 'mdo', 'Medtr1g050352' => 'mtr', 'Medtr1g070385' => 'mtr', 'Medtr1g070450' => 'mtr', 'Medtr1g075200' => 'mtr', 'Medtr1g075250' => 'mtr', 'Medtr1g075260' => 'mtr', 'Medtr1g475250' => 'mtr', 'Medtr4g075450' => 'mtr', 'Medtr7g096300' => 'mtr', 'Medtr8g105110' => 'mtr', 'MELO3C006470.2' => 'cme', 'MELO3C006471.2' => 'cme', 'MELO3C020772.2' => 'cme', 'MELO3C026780.2' => 'cme', 'MELO3C026781.2' => 'cme', 'Migut.D00390' => 'egut', 'Migut.G00435' => 'egut', 'Migut.G00436' => 'egut', 'Migut.G00718' => 'egut', 'MSTRG.21891' => 'ama', 'MSTRG.26910' => 'ama', 'MSTRG.4099' => 'ama', 'MSTRG.9925' => 'ama', 'Nitab4.5_0000165g0010' => 'nta', 'Nitab4.5_0000209g0180' => 'nta', 'Nitab4.5_0000244g0440' => 'nta', 'Nitab4.5_0000525g0220' => 'nta', 'Nitab4.5_0001597g0020' => 'nta', 'Nitab4.5_0001878g0040' => 'nta', 'Nitab4.5_0001878g0060' => 'nta', 'Nitab4.5_0002838g0100' => 'nta', 'Nitab4.5_0002838g0120' => 'nta', 'Nitab4.5_0004798g0030' => 'nta', 'Nitab4.5_0005420g0010' => 'nta', 'Nitab4.5_0005507g0010' => 'nta', 'Nitab4.5_0005574g0020' => 'nta', 'Nitab4.5_0005838g0010' => 'nta', 'Nitab4.5_0010580g0020' => 'nta', 'Nn1g02599' => 'nnu', 'Nn1g02608' => 'nnu', 'Nn3g17742' => 'nnu', 'Nn3g19534' => 'nnu', 'Nn3g19535' => 'nnu', 'Oeu008790.1' => 'oeu', 'Oeu008792.1' => 'oeu', 'Oeu032590.1' => 'oeu', 'Oeu035349.1' => 'oeu', 'Oeu049791.1' => 'oeu', 'Os01g0774500' => 'osa', 'Os03g0628800' => 'osa', 'Os03g0798600' => 'osa', 'Os05g0508800' => 'osa', 'Peaxi162Scf00036g02018' => 'pax', 'Peaxi162Scf00578g00032' => 'pax', 'Peaxi162Scf00578g00317' => 'pax', 'Peaxi162Scf00785g00114' => 'pax', 'Peaxi162Scf00813g00119' => 'pax', 'Peaxi162Scf00906g00227' => 'pax', 'PGR004G0875' => 'pgr', 'PGR004G2424' => 'pgr', 'PGR031G1239' => 'pgr', 'PGR031G2474' => 'pgr', 'PGR044G0423' => 'pgr', 'PGSC0003DMG400001128' => 'stu', 'PGSC0003DMG400007336' => 'stu', 'PGSC0003DMG400016318' => 'stu', 'PGSC0003DMG400016319' => 'stu', 'PGSC0003DMG400018074' => 'stu', 'Phvul.001G157700' => 'pvu', 'Phvul.002G148550' => 'pvu', 'Phvul.002G320200' => 'pvu', 'Phvul.003G089200' => 'pvu', 'Phvul.007G126000' => 'pvu', 'Phvul.007G126100' => 'pvu', 'Phvul.007G178000' => 'pvu', 'Phvul.007G178200' => 'pvu', 'Potri.002G043000' => 'ptr', 'Potri.002G043200' => 'ptr', 'Potri.003G123750' => 'ptr', 'Potri.005G055401' => 'ptr', 'Potri.005G219700' => 'ptr', 'Potri.005G220000' => 'ptr', 'Potri.008G161901' => 'ptr', 'Potri.008G162000' => 'ptr', 'Potri.008G162400' => 'ptr', 'Potri.010G076900' => 'ptr', 'Pp3c12_9180' => 'ppa', 'Pp3c13_19770' => 'ppa', 'Pp3c14_22950' => 'ppa', 'Pp3c16_12160' => 'ppa', 'Pp3c27_7820' => 'ppa', 'Pp3c2_3490' => 'ppa', 'Pp3c3_23700' => 'ppa', 'Pp3c3_36520' => 'ppa', 'Pp3c4_15250' => 'ppa', 'PRCOL_00007002' => 'pco', 'Prupe.1G030600' => 'ppe', 'Prupe.1G030700' => 'ppe', 'Prupe.6G345200' => 'ppe', 'Prupe.8G230300' => 'ppe', 'Prupe.8G230500' => 'ppe', 'Psat3g059600' => 'psa', 'Psat5g200920' => 'psa', 'Psat6g056440' => 'psa', 'Psat6g057360' => 'psa', 'Psat6g134120' => 'psa', 'Psat6g134160' => 'psa', 'Psat7g008640' => 'psa', 'Psat7g185240' => 'psa', 'PSO017G1330' => 'pso', 'PSO063G6097' => 'pso', 'PSO170G0835' => 'pso', 'PSO170G2499' => 'pso', 'PSO210G5058' => 'pso', 'PSO210G6154' => 'pso', 'PSO585G0031' => 'pso', 'PSO832G0264' => 'pso', 'PSO832G4288' => 'pso', 'QL03p027355' => 'qlo', 'QL03p027430' => 'qlo', 'QL04p081380' => 'qlo', 'QL06p015642' => 'qlo', 'QL06p015650' => 'qlo', 'QL06p015686' => 'qlo', 'QL12p042927' => 'qlo', 'QL93p1863_0035' => 'qlo', 'RcHm_v2.0_Chr3g0450581' => 'rch', 'RcHm_v2.0_Chr4g0390371' => 'rch', 'RcHm_v2.0_Chr4g0390381' => 'rch', 'RcHm_v2.0_Chr4g0390491' => 'rch', 'RcHm_v2.0_Chr4g0390501' => 'rch', 'RcHm_v2.0_Chr6g0289231' => 'rch', 'Rhsim04G0190400' => 'rsi', 'Rhsim04G0190500' => 'rsi', 'Rhsim04G0190600' => 'rsi', 'Rhsim13G0031400' => 'rsi', 'Rhsim13G0165600' => 'rsi', 'RhsimUnG0114600' => 'rsi', 'RhsimUnG0114700' => 'rsi', 'Sabra02G0034800' => 'sbr', 'Sabra02G0035100' => 'sbr', 'Sabra05G0168600' => 'sbr', 'Sabra05G0168800' => 'sbr', 'Sabra08G0123700' => 'sbr', 'Sabra10G0031900' => 'sbr', 'Sabra13G0039000' => 'sbr', 'SalBow2G0782' => 'sbo', 'SalBow2G1403' => 'sbo', 'SalBow4G0074' => 'sbo', 'SalBow4G2635' => 'sbo', 'SalBow5G3010' => 'sbo', 'Sc05g0000870' => 'sci', 'Sc05g0000890' => 'sci', 'Sc13g0005000' => 'sci', 'Sc13g0005030' => 'sci', 'Sc19g0003790' => 'sci', 'Sc19g0003800' => 'sci', 'Sed0003467' => 'sed', 'Sed0009355' => 'sed', 'Sed0009894' => 'sed', 'Sed0011972' => 'sed', 'Sed0021483' => 'sed', 'Sed0021750' => 'sed', 'Sed0026279' => 'sed', 'SEGI_05312' => 'sgi', 'SEGI_10112' => 'sgi', 'SEGI_15835' => 'sgi', 'SEGI_30386' => 'sgi', 'SEGI_34122' => 'sgi', 'SEGI_35063' => 'sgi', 'SGA_v2.0_scaffold101G29794' => 'sas', 'SGA_v2.0_scaffold1G00573' => 'sas', 'SGA_v2.0_scaffold79G25637' => 'sas', 'SGA_v2.0_scaffold88G27283' => 'sas', 'SGA_v2.0_scaffold88G27285' => 'sas', 'SGA_v2.0_scaffold88G27331' => 'sas', 'SHI09937' => 'shi', 'SMO119G0302' => 'smo', 'SMO137G0231' => 'smo', 'SMO367G1151' => 'smo', 'Solyc02g082000.3' => 'sly', 'Solyc06g031670.3' => 'sly', 'Solyc06g053810.3' => 'sly', 'Solyc07g025457.1' => 'sly', 'Solyc08g059740.1' => 'sly', 'Solyc08g059750.3' => 'sly', 'Solyc09g083370.3' => 'sly', 'Solyc12g038950.3' => 'sly', 'Sopen02g026630' => 'spe', 'Sopen06g018930' => 'spe', 'Sopen06g018940' => 'spe', 'Sopen08g009460' => 'spe', 'Sopen09g032290' => 'spe', 'Sp1g03080' => 'spa', 'Sp1g03090' => 'spa', 'Sp1g05480' => 'spa', 'Sp2g07860' => 'spa', 'Sp2g08430' => 'spa', 'Sp2g08440' => 'spa', 'Sp2g26200' => 'spa', 'Sp4g13170' => 'spa', 'Sp6g33840' => 'spa', 'SpUn1204_0010' => 'spa', 'TAR365G0908' => 'tar', 'TAR381G1270' => 'tar', 'TAR381G1651' => 'tar', 'TAR625G1131' => 'tar', 'TAR633G0962' => 'tar', 'TAR633G1729' => 'tar', 'TAR633G1864' => 'tar', 'TAR636G0221' => 'tar', 'TAR636G0314' => 'tar', 'TAR636G3202' => 'tar', 'THA.LOC104800805' => 'tha', 'THA.LOC104801096' => 'tha', 'THA.LOC104801555' => 'tha', 'THA.LOC104808491' => 'tha', 'THA.LOC104808595' => 'tha', 'THA.LOC104815985' => 'tha', 'THA.LOC104822250' => 'tha', 'THA.LOC104826071' => 'tha', 'Thecc.01G265200' => 'tca', 'Thecc.01G265300' => 'tca', 'Thecc.01G265700' => 'tca', 'Thecc.03G109100' => 'tca', 'Thecc.04G245900' => 'tca', 'Thecc.04G246000' => 'tca', 'Thhalv10003334m.g' => 'esa', 'Thhalv10005508m.g' => 'esa', 'Thhalv10005643m.g' => 'esa', 'Thhalv10007316m.g' => 'esa', 'Thhalv10009006m.g' => 'esa', 'Thhalv10009309m.g' => 'esa', 'Thhalv10014917m.g' => 'esa', 'Thhalv10014919m.g' => 'esa', 'Thhalv10015393m.g' => 'esa', 'Thhalv10016515m.g' => 'esa', 'Thhalv10029242m.g' => 'esa', 'TPR.G16654' => 'tpr', 'TPR.G20589' => 'tpr', 'TPR.G23029' => 'tpr', 'TPR.G27731' => 'tpr', 'TPR.G28889' => 'tpr', 'TPR.G28899' => 'tpr', 'TPR.G30846' => 'tpr', 'TPR.G5452' => 'tpr', 'TPR.G5713' => 'tpr', 'TPR.G9046' => 'tpr', 'TPR.G9061' => 'tpr', 'TWI09G1075' => 'twi', 'TWI12G0806' => 'twi', 'TWI18G0108' => 'twi', 'TWI53G1361' => 'twi', 'TWI73G0185' => 'twi', 'TWI73G0427' => 'twi', 'unitig_37.g12001' => 'ugi', 'unitig_747.g21660' => 'ugi', 'unitig_748.g7232' => 'ugi', 'unitig_748.g7315' => 'ugi', 'unitig_85.g27262' => 'ugi', 'unitig_92.g28220' => 'ugi', 'vmacro02632' => 'vma', 'vmacro08410' => 'vma', 'vmacro08411' => 'vma', 'vmacro15407' => 'vma', 'VMungo0251G3619' => 'vmu', 'VMungo0720G1204' => 'vmu', 'VMungo0720G1918' => 'vmu', 'VMungo0720G2387' => 'vmu', 'VMungo0720G2961' => 'vmu', 'VMungo1215G2154' => 'vmu', 'VMungo1383G2411' => 'vmu', 'Zm00001eb051130' => 'zma', 'Zm00001eb116830' => 'zma', 'Zm00001eb116850' => 'zma', 'Zm00001eb151740' => 'zma', 'Zm00001eb292360' => 'zma', 'Zm00001eb301640' => 'zma' ), 'gf_id' => 'HOM05D000856', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000856' ), 'data_identifier' => 'HOM05D000856', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000856', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p00010' => 'bna', 'A03p04160' => 'bna', 'A03p17160' => 'bna', 'A04p23370' => 'bna', 'A05p14860' => 'bna', 'A08p37020' => 'bna', 'A09p08050' => 'bna', 'A09p66800' => 'bna', 'A09p67940' => 'bna', 'A10p02680' => 'bna', 'A10p05320' => 'bna', 'Aa31LG1G20560' => 'aar', 'Aa31LG1G20610' => 'aar', 'Aa31LG1G7810' => 'aar', 'Aa31LG5G3590' => 'aar', 'Aa31LG5G6140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3819' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4683' => 'aag', 'Actinidia04480' => 'ach', 'Actinidia05466' => 'ach', 'Actinidia08445' => 'ach', 'Actinidia21170' => 'ach', 'Actinidia24812' => 'ach', 'Actinidia24951' => 'ach', 'Actinidia40088' => 'ach', 'Ah.02g111660' => 'amhyb', 'Ah.11g048900' => 'amhyb', 'Ah.11g049910' => 'amhyb', 'AL1G13870' => 'aly', 'AL1G13880' => 'aly', 'AL1G16760' => 'aly', 'AL390U10020' => 'aly', 'AL4G25520' => 'aly', 'AL6G19890' => 'aly', 'AL6G19900' => 'aly', 'AL6G19910' => 'aly', 'AL8G40100' => 'aly', 'Aqoxy2G03562' => 'aox', 'Aqoxy5G00316' => 'aox', 'Aqoxy5G00926' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1628KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1H403S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2FU6SJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.882I6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8YRY2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YN1SN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AF70II' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZA8L1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F916KL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHRD8H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KTZ8QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S22EMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8M29T' => 'arhy', 'AT1G04270' => 'ath', 'AT1G04280' => 'ath', 'AT1G06750' => 'ath', 'AT1G33850' => 'ath', 'AT2G30630' => 'ath', 'AT5G09490' => 'ath', 'AT5G09500' => 'ath', 'AT5G09510' => 'ath', 'AT5G43640' => 'ath', 'AT5G63070' => 'ath', 'ATR0605G315' => 'atr', 'Atru.chr11.175' => 'acertr', 'Atru.chr11.653' => 'acertr', 'Atru.chr3.1616' => 'acertr', 'Atru.chr4.2230' => 'acertr', 'Atru.chr4.2232' => 'acertr', 'Atru.chr5.1598' => 'acertr', 'Atru.chr5.1600' => 'acertr', 'Atru.chr5.2188' => 'acertr', 'AUR62008326' => 'cqu', 'AUR62011922' => 'cqu', 'AUR62011924' => 'cqu', 'AUR62021771' => 'cqu', 'AUR62032237' => 'cqu', 'AUR62032240' => 'cqu', 'BcaB01g05572' => 'bca', 'BcaB02g10337' => 'bca', 'BcaB04g19944' => 'bca', 'BcaB05g21548' => 'bca', 'BcaB05g21549' => 'bca', 'BcaB05g23227' => 'bca', 'BcaB06g26256' => 'bca', 'BcaB06g26257' => 'bca', 'BcaB06g28379' => 'bca', 'BcaC02g11159' => 'bca', 'BcaC03g13258' => 'bca', 'BcaC03g13259' => 'bca', 'BcaC05g24456' => 'bca', 'BcaC05g24457' => 'bca', 'BcaC07g36922' => 'bca', 'BcaC07g36923' => 'bca', 'BcaC07g42050' => 'bca', 'BcaC07g42176' => 'bca', 'BcaC07g42195' => 'bca', 'BcaC07g42196' => 'bca', 'BcaNung06674' => 'bca', 'BolC2t06351H' => 'bol', 'BolC2t06352H' => 'bol', 'BolC3t12993H' => 'bol', 'BolC4t23525H' => 'bol', 'BolC4t27475H' => 'bol', 'BolC5t29025H' => 'bol', 'BolC5t29026H' => 'bol', 'BolC8t46898H' => 'bol', 'BolC8t46899H' => 'bol', 'BolC8t52630H' => 'bol', 'BolC8t52765H' => 'bol', 'BolC9t53824H' => 'bol', 'BraA03t09760Z' => 'bra', 'BraA03t10990Z' => 'bra', 'BraA05t20413Z' => 'bra', 'BraA08t35602Z' => 'bra', 'BraA09t36458Z' => 'bra', 'BraA09t42018Z' => 'bra', 'BraA09t42129Z' => 'bra', 'BraA10t42536Z' => 'bra', 'BraA10t42537Z' => 'bra', 'C01p10690' => 'bna', 'C02p03890' => 'bna', 'C02p03900' => 'bna', 'C03p04620' => 'bna', 'C04p19870' => 'bna', 'C04p59670' => 'bna', 'C05p02460' => 'bna', 'C05p02470' => 'bna', 'C08p00980' => 'bna', 'C08p00990' => 'bna', 'C08p51030' => 'bna', 'C08p52360' => 'bna', 'C09p09120' => 'bna', 'CAN.G19.15' => 'can', 'CAN.G251.10' => 'can', 'CAN.G251.9' => 'can', 'CAN.G398.24' => 'can', 'CAN.G410.32' => 'can', 'CAN.G881.2' => 'can', 'CANSAT01G3025' => 'cansat', 'CANSAT78G1211' => 'cansat', 'CANSAT78G1218' => 'cansat', 'CANSAT78G1521' => 'cansat', 'CANSAT78G1670' => 'cansat', 'CARHR003600' => 'chi', 'CARHR003610' => 'chi', 'CARHR006290' => 'chi', 'CARHR006430' => 'chi', 'CARHR124110' => 'chi', 'CARHR203870' => 'chi', 'CARHR203880' => 'chi', 'CARHR203890' => 'chi', 'CARHR276880' => 'chi', 'Carub.0001s0346' => 'cru', 'Carub.0001s0347' => 'cru', 'Carub.0001s0607' => 'cru', 'Carub.0003s2768' => 'cru', 'Carub.0003s2769' => 'cru', 'Carub.0004s1178' => 'cru', 'Carub.0006s0806' => 'cru', 'Carub.0006s0807' => 'cru', 'Carub.0006s0808' => 'cru', 'Carub.0008s0501' => 'cru', 'Carub.0008s2379' => 'cru', 'Ca_08655_v3' => 'car', 'Ca_08922_v3' => 'car', 'Ca_08923_v3' => 'car', 'Ca_09119_v3' => 'car', 'Ca_09703_v3' => 'car', 'Ca_09705_v3' => 'car', 'Ca_09835_v3' => 'car', 'Ca_26403_v3' => 'car', 'Ca_30719_v3' => 'car', 'CBR_g17958' => 'cbr', 'CBR_g40516' => 'cbr', 'Cc00_g05350' => 'ccan', 'Cc01_g18690' => 'ccan', 'Cc03_g04830' => 'ccan', 'Cc03_g04850' => 'ccan', 'CDE02G4469' => 'cde', 'CDE06G0883' => 'cde', 'CDE06G1295' => 'cde', 'CDE06G1390' => 'cde', 'CDE07G0584' => 'cde', 'CDE07G1084' => 'cde', 'CDE08G1259' => 'cde', 'Cfa002341' => 'cfa', 'Cfa024337' => 'cfa', 'Ciclev10004749m.g' => 'ccl', 'Ciclev10006127m.g' => 'ccl', 'Ciclev10019720m.g' => 'ccl', 'Ciclev10022652m.g' => 'ccl', 'CiPaw.01G190400' => 'cil', 'CiPaw.01G190500' => 'cil', 'CiPaw.02G116400' => 'cil', 'CiPaw.02G116500' => 'cil', 'CiPaw.04G183000' => 'cil', 'CiPaw.04G183300' => 'cil', 'ClCG05G004610' => 'cla', 'ClCG05G004620' => 'cla', 'ClCG06G006730' => 'cla', 'ClCG06G006740' => 'cla', 'ClCG11G003690' => 'cla', 'COL.COLO4_08276' => 'col', 'COL.COLO4_08277' => 'col', 'COL.COLO4_15787' => 'col', 'COL.COLO4_15789' => 'col', 'Cpa.g.c44815' => 'cpa', 'Cpa.g.sc52.144' => 'cpa', 'Cpa.g.sc58.46' => 'cpa', 'Cpa.g.sc58.47' => 'cpa', 'Cre08.g360900' => 'cre', 'CsaV3_2G013030' => 'csa', 'CsaV3_2G013050' => 'csa', 'CsaV3_2G015620' => 'csa', 'CsaV3_3G012590' => 'csa', 'CsaV3_3G012600' => 'csa', 'CSS0001641' => 'camsi', 'CSS0008310' => 'camsi', 'CSS0013011' => 'camsi', 'CSS0017147' => 'camsi', 'CSS0022970' => 'camsi', 'CSS0025655' => 'camsi', 'CSS0028665' => 'camsi', 'CSS0029117' => 'camsi', 'CSS0032024' => 'camsi', 'CSS0039681' => 'camsi', 'CSS0046516' => 'camsi', 'CSS0050307' => 'camsi', 'DCAR_005871' => 'dca', 'DCAR_007342' => 'dca', 'DCAR_024228' => 'dca', 'DCAR_027277' => 'dca', 'DCAR_030718' => 'dca', 'Dinv20287' => 'din', 'Dinv22461' => 'din', 'Dinv22464' => 'din', 'Dinv29912' => 'din', 'Dinv29913' => 'din', 'Dinv34580' => 'din', 'Dinv34582' => 'din', 'Dinv44632' => 'din', 'Duzib052G0266' => 'dzi', 'Duzib133G0907' => 'dzi', 'Duzib133G1034' => 'dzi', 'Duzib138G0207' => 'dzi', 'Duzib138G0491' => 'dzi', 'Duzib151G0812' => 'dzi', 'Duzib151G1166' => 'dzi', 'Duzib168G0192' => 'dzi', 'Duzib211G0077' => 'dzi', 'Duzib212G0429' => 'dzi', 'Duzib212G0472' => 'dzi', 'ECA233G2617' => 'eca', 'ECA236G4188' => 'eca', 'ECA240G0936' => 'eca', 'ECA240G1129' => 'eca', 'ECA247G0623' => 'eca', 'EL10Ac5g10451' => 'bvu', 'EL10Ac5g10453' => 'bvu', 'EL10Ac5g10894' => 'bvu', 'Eucgr.H00192' => 'egr', 'Eucgr.H00193' => 'egr', 'Eucgr.H00194' => 'egr', 'Eucgr.J01562' => 'egr', 'Eucgr.K03301' => 'egr', 'FAN02G0632' => 'fan', 'FAN05G5378' => 'fan', 'FAN09G3247' => 'fan', 'FAN12G0435' => 'fan', 'FAN12G2426' => 'fan', 'FAN14G1707' => 'fan', 'FAN14G4725' => 'fan', 'FAN15G2071' => 'fan', 'FAN17G3065' => 'fan', 'FAN19G1376' => 'fan', 'FAN20G0354' => 'fan', 'FAN20G2429' => 'fan', 'FAN20G2658' => 'fan', 'FAN24G2343' => 'fan', 'FAN27G2362' => 'fan', 'FAN28G1765' => 'fan', 'FvH4_1g16020' => 'fve', 'FvH4_2g04890' => 'fve', 'FvH4_2g22270' => 'fve', 'FvH4_4g02630' => 'fve', 'FvH4_4g02640' => 'fve', 'FvH4_6g02650' => 'fve', 'Glyma.02G140600' => 'gma', 'Glyma.03G159900' => 'gma', 'Glyma.05G234800' => 'gma', 'Glyma.07G269600' => 'gma', 'Glyma.08G042300' => 'gma', 'Glyma.10G033500' => 'gma', 'Glyma.10G185200' => 'gma', 'Glyma.17G004300' => 'gma', 'Glyma.19G161900' => 'gma', 'Glyma.20G205100' => 'gma', 'Glyma.20G205200' => 'gma', 'Gohir.A01G139101' => 'ghi', 'Gohir.A02G035600' => 'ghi', 'Gohir.A02G117901' => 'ghi', 'Gohir.A07G210100' => 'ghi', 'Gohir.A07G210200' => 'ghi', 'Gohir.A08G061100' => 'ghi', 'Gohir.A09G223000' => 'ghi', 'Gohir.A09G223100' => 'ghi', 'Gohir.A10G113900' => 'ghi', 'Gohir.A10G114000' => 'ghi', 'Gohir.D02G042300' => 'ghi', 'Gohir.D07G216100' => 'ghi', 'Gohir.D07G216200' => 'ghi', 'Gohir.D08G070400' => 'ghi', 'Gohir.D09G225000' => 'ghi', 'Gohir.D09G225100' => 'ghi', 'Gohir.D10G152300' => 'ghi', 'Gohir.D10G153200' => 'ghi', 'Gohir.D11G133701' => 'ghi', 'Gorai.004G074100' => 'gra', 'Gorai.005G046800' => 'gra', 'Gorai.006G246500' => 'gra', 'Gorai.006G246600' => 'gra', 'Gorai.007G142900' => 'gra', 'Gorai.011G171000' => 'gra', 'Gorai.011G171100' => 'gra', 'Gorai.013G104300' => 'gra', 'Gorai.013G104400' => 'gra', 'GSVIVG01000754001' => 'vvi', 'GSVIVG01000756001' => 'vvi', 'GSVIVG01010903001' => 'vvi', 'GSVIVG01017623001' => 'vvi', 'GSVIVG01018113001' => 'vvi', 'GSVIVG01018116001' => 'vvi', 'GSVIVG01018118001' => 'vvi', 'HanXRQChr03g0076211' => 'han', 'HanXRQChr03g0092431' => 'han', 'HanXRQChr03g0092441' => 'han', 'HanXRQChr03g0092591' => 'han', 'HanXRQChr03g0092671' => 'han', 'HanXRQChr03g0092681' => 'han', 'HanXRQChr03g0092691' => 'han', 'HanXRQChr03g0092701' => 'han', 'HanXRQChr03g0092721' => 'han', 'HanXRQChr03g0092731' => 'han', 'HanXRQChr04g0113681' => 'han', 'HanXRQChr10g0281371' => 'han', 'HanXRQChr11g0337141' => 'han', 'HanXRQChr13g0424521' => 'han', 'HanXRQChr13g0424531' => 'han', 'HanXRQChr13g0424541' => 'han', 'HanXRQChr16g0498221' => 'han', 'Haze_04377' => 'cav', 'Haze_11298' => 'cav', 'Haze_24547' => 'cav', 'Haze_24550' => 'cav', 'Haze_26587' => 'cav', 'Hma1.2p1_0650F.1_g195410' => 'hma', 'Hma1.2p1_0893F.1_g233470' => 'hma', 'HPP92_006508' => 'vpl', 'HPP92_024780' => 'vpl', 'Hund02688' => 'sun', 'Hund09380' => 'sun', 'Hund09381' => 'sun', 'Hund09832' => 'sun', 'Hund09833' => 'sun', 'Hund11351' => 'sun', 'Hund11513' => 'sun', 'Lalb_Chr06g0162591' => 'lal', 'Lalb_Chr06g0162601' => 'lal', 'Lalb_Chr06g0169321' => 'lal', 'Lalb_Chr09g0330951' => 'lal', 'Lalb_Chr16g0387631' => 'lal', 'Lalb_Chr21g0306241' => 'lal', 'Lalb_Chr25g0290051' => 'lal', 'Lalb_Chr25g0290061' => 'lal', 'Lalb_Chr25g0290071' => 'lal', 'Lj1g0003876' => 'lja', 'Lj1P1207T36' => 'lonja', 'Lj2C1156G12' => 'lonja', 'Lj3A793G39' => 'lonja', 'Lj3C580G2' => 'lonja', 'Lj3C780G2' => 'lonja', 'Lj3C780T4' => 'lonja', 'Lj3C793G9' => 'lonja', 'Lj4g0012960' => 'lja', 'Lj5g0021252' => 'lja', 'Lj5g0021484' => 'lja', 'Lj5g0024528' => 'lja', 'Lj6A399T12' => 'lonja', 'Lj6A656G65' => 'lonja', 'Lsat_1_v5_gn_3_125500' => 'lsa', 'Lsat_1_v5_gn_3_125540' => 'lsa', 'Lsat_1_v5_gn_5_72701' => 'lsa', 'Lsat_1_v5_gn_8_91560' => 'lsa', 'Lsat_1_v5_gn_9_9640' => 'lsa', 'Manes.01G200600' => 'mes', 'Manes.01G200700' => 'mes', 'Manes.03G168900' => 'mes', 'Manes.03G169000' => 'mes', 'Manes.05G085801' => 'mes', 'Manes.05G086200' => 'mes', 'Manes.15G036700' => 'mes', 'Manes.15G036900' => 'mes', 'Mapoly0004s0172' => 'mpo', 'Mapoly0023s0001' => 'mpo', 'Mapoly0142s0012' => 'mpo', 'MBI01_g32854_MAGBIO' => 'mbi', 'MBI11_g24427_MAGBIO' => 'mbi', 'MBI11_g47319_MAGBIO' => 'mbi', 'MCO01G433' => 'mco', 'MD00G1187800' => 'mdo', 'MD04G1226500' => 'mdo', 'MD05G1203900' => 'mdo', 'MD10G1191100' => 'mdo', 'MD12G1243500' => 'mdo', 'MD13G1207000' => 'mdo', 'MD13G1207100' => 'mdo', 'MD16G1208600' => 'mdo', 'Medtr1g050352' => 'mtr', 'Medtr1g070385' => 'mtr', 'Medtr1g070450' => 'mtr', 'Medtr1g075200' => 'mtr', 'Medtr1g075250' => 'mtr', 'Medtr1g075260' => 'mtr', 'Medtr1g475250' => 'mtr', 'Medtr4g075450' => 'mtr', 'Medtr7g096300' => 'mtr', 'Medtr8g105110' => 'mtr', 'MELO3C006470.2' => 'cme', 'MELO3C006471.2' => 'cme', 'MELO3C020772.2' => 'cme', 'MELO3C026780.2' => 'cme', 'MELO3C026781.2' => 'cme', 'Migut.D00390' => 'egut', 'Migut.G00435' => 'egut', 'Migut.G00436' => 'egut', 'Migut.G00718' => 'egut', 'MSTRG.21891' => 'ama', 'MSTRG.26910' => 'ama', 'MSTRG.4099' => 'ama', 'MSTRG.9925' => 'ama', 'Nitab4.5_0000165g0010' => 'nta', 'Nitab4.5_0000209g0180' => 'nta', 'Nitab4.5_0000244g0440' => 'nta', 'Nitab4.5_0000525g0220' => 'nta', 'Nitab4.5_0001597g0020' => 'nta', 'Nitab4.5_0001878g0040' => 'nta', 'Nitab4.5_0001878g0060' => 'nta', 'Nitab4.5_0002838g0100' => 'nta', 'Nitab4.5_0002838g0120' => 'nta', 'Nitab4.5_0004798g0030' => 'nta', 'Nitab4.5_0005420g0010' => 'nta', 'Nitab4.5_0005507g0010' => 'nta', 'Nitab4.5_0005574g0020' => 'nta', 'Nitab4.5_0005838g0010' => 'nta', 'Nitab4.5_0010580g0020' => 'nta', 'Nn1g02599' => 'nnu', 'Nn1g02608' => 'nnu', 'Nn3g17742' => 'nnu', 'Nn3g19534' => 'nnu', 'Nn3g19535' => 'nnu', 'Oeu008790.1' => 'oeu', 'Oeu008792.1' => 'oeu', 'Oeu032590.1' => 'oeu', 'Oeu035349.1' => 'oeu', 'Oeu049791.1' => 'oeu', 'Os01g0774500' => 'osa', 'Os03g0628800' => 'osa', 'Os03g0798600' => 'osa', 'Os05g0508800' => 'osa', 'Peaxi162Scf00036g02018' => 'pax', 'Peaxi162Scf00578g00032' => 'pax', 'Peaxi162Scf00578g00317' => 'pax', 'Peaxi162Scf00785g00114' => 'pax', 'Peaxi162Scf00813g00119' => 'pax', 'Peaxi162Scf00906g00227' => 'pax', 'PGR004G0875' => 'pgr', 'PGR004G2424' => 'pgr', 'PGR031G1239' => 'pgr', 'PGR031G2474' => 'pgr', 'PGR044G0423' => 'pgr', 'PGSC0003DMG400001128' => 'stu', 'PGSC0003DMG400007336' => 'stu', 'PGSC0003DMG400016318' => 'stu', 'PGSC0003DMG400016319' => 'stu', 'PGSC0003DMG400018074' => 'stu', 'Phvul.001G157700' => 'pvu', 'Phvul.002G148550' => 'pvu', 'Phvul.002G320200' => 'pvu', 'Phvul.003G089200' => 'pvu', 'Phvul.007G126000' => 'pvu', 'Phvul.007G126100' => 'pvu', 'Phvul.007G178000' => 'pvu', 'Phvul.007G178200' => 'pvu', 'Potri.002G043000' => 'ptr', 'Potri.002G043200' => 'ptr', 'Potri.003G123750' => 'ptr', 'Potri.005G055401' => 'ptr', 'Potri.005G219700' => 'ptr', 'Potri.005G220000' => 'ptr', 'Potri.008G161901' => 'ptr', 'Potri.008G162000' => 'ptr', 'Potri.008G162400' => 'ptr', 'Potri.010G076900' => 'ptr', 'Pp3c12_9180' => 'ppa', 'Pp3c13_19770' => 'ppa', 'Pp3c14_22950' => 'ppa', 'Pp3c16_12160' => 'ppa', 'Pp3c27_7820' => 'ppa', 'Pp3c2_3490' => 'ppa', 'Pp3c3_23700' => 'ppa', 'Pp3c3_36520' => 'ppa', 'Pp3c4_15250' => 'ppa', 'PRCOL_00007002' => 'pco', 'Prupe.1G030600' => 'ppe', 'Prupe.1G030700' => 'ppe', 'Prupe.6G345200' => 'ppe', 'Prupe.8G230300' => 'ppe', 'Prupe.8G230500' => 'ppe', 'Psat3g059600' => 'psa', 'Psat5g200920' => 'psa', 'Psat6g056440' => 'psa', 'Psat6g057360' => 'psa', 'Psat6g134120' => 'psa', 'Psat6g134160' => 'psa', 'Psat7g008640' => 'psa', 'Psat7g185240' => 'psa', 'PSO017G1330' => 'pso', 'PSO063G6097' => 'pso', 'PSO170G0835' => 'pso', 'PSO170G2499' => 'pso', 'PSO210G5058' => 'pso', 'PSO210G6154' => 'pso', 'PSO585G0031' => 'pso', 'PSO832G0264' => 'pso', 'PSO832G4288' => 'pso', 'QL03p027355' => 'qlo', 'QL03p027430' => 'qlo', 'QL04p081380' => 'qlo', 'QL06p015642' => 'qlo', 'QL06p015650' => 'qlo', 'QL06p015686' => 'qlo', 'QL12p042927' => 'qlo', 'QL93p1863_0035' => 'qlo', 'RcHm_v2.0_Chr3g0450581' => 'rch', 'RcHm_v2.0_Chr4g0390371' => 'rch', 'RcHm_v2.0_Chr4g0390381' => 'rch', 'RcHm_v2.0_Chr4g0390491' => 'rch', 'RcHm_v2.0_Chr4g0390501' => 'rch', 'RcHm_v2.0_Chr6g0289231' => 'rch', 'Rhsim04G0190400' => 'rsi', 'Rhsim04G0190500' => 'rsi', 'Rhsim04G0190600' => 'rsi', 'Rhsim13G0031400' => 'rsi', 'Rhsim13G0165600' => 'rsi', 'RhsimUnG0114600' => 'rsi', 'RhsimUnG0114700' => 'rsi', 'Sabra02G0034800' => 'sbr', 'Sabra02G0035100' => 'sbr', 'Sabra05G0168600' => 'sbr', 'Sabra05G0168800' => 'sbr', 'Sabra08G0123700' => 'sbr', 'Sabra10G0031900' => 'sbr', 'Sabra13G0039000' => 'sbr', 'SalBow2G0782' => 'sbo', 'SalBow2G1403' => 'sbo', 'SalBow4G0074' => 'sbo', 'SalBow4G2635' => 'sbo', 'SalBow5G3010' => 'sbo', 'Sc05g0000870' => 'sci', 'Sc05g0000890' => 'sci', 'Sc13g0005000' => 'sci', 'Sc13g0005030' => 'sci', 'Sc19g0003790' => 'sci', 'Sc19g0003800' => 'sci', 'Sed0003467' => 'sed', 'Sed0009355' => 'sed', 'Sed0009894' => 'sed', 'Sed0011972' => 'sed', 'Sed0021483' => 'sed', 'Sed0021750' => 'sed', 'Sed0026279' => 'sed', 'SEGI_05312' => 'sgi', 'SEGI_10112' => 'sgi', 'SEGI_15835' => 'sgi', 'SEGI_30386' => 'sgi', 'SEGI_34122' => 'sgi', 'SEGI_35063' => 'sgi', 'SGA_v2.0_scaffold101G29794' => 'sas', 'SGA_v2.0_scaffold1G00573' => 'sas', 'SGA_v2.0_scaffold79G25637' => 'sas', 'SGA_v2.0_scaffold88G27283' => 'sas', 'SGA_v2.0_scaffold88G27285' => 'sas', 'SGA_v2.0_scaffold88G27331' => 'sas', 'SHI09937' => 'shi', 'SMO119G0302' => 'smo', 'SMO137G0231' => 'smo', 'SMO367G1151' => 'smo', 'Solyc02g082000.3' => 'sly', 'Solyc06g031670.3' => 'sly', 'Solyc06g053810.3' => 'sly', 'Solyc07g025457.1' => 'sly', 'Solyc08g059740.1' => 'sly', 'Solyc08g059750.3' => 'sly', 'Solyc09g083370.3' => 'sly', 'Solyc12g038950.3' => 'sly', 'Sopen02g026630' => 'spe', 'Sopen06g018930' => 'spe', 'Sopen06g018940' => 'spe', 'Sopen08g009460' => 'spe', 'Sopen09g032290' => 'spe', 'Sp1g03080' => 'spa', 'Sp1g03090' => 'spa', 'Sp1g05480' => 'spa', 'Sp2g07860' => 'spa', 'Sp2g08430' => 'spa', 'Sp2g08440' => 'spa', 'Sp2g26200' => 'spa', 'Sp4g13170' => 'spa', 'Sp6g33840' => 'spa', 'SpUn1204_0010' => 'spa', 'TAR365G0908' => 'tar', 'TAR381G1270' => 'tar', 'TAR381G1651' => 'tar', 'TAR625G1131' => 'tar', 'TAR633G0962' => 'tar', 'TAR633G1729' => 'tar', 'TAR633G1864' => 'tar', 'TAR636G0221' => 'tar', 'TAR636G0314' => 'tar', 'TAR636G3202' => 'tar', 'THA.LOC104800805' => 'tha', 'THA.LOC104801096' => 'tha', 'THA.LOC104801555' => 'tha', 'THA.LOC104808491' => 'tha', 'THA.LOC104808595' => 'tha', 'THA.LOC104815985' => 'tha', 'THA.LOC104822250' => 'tha', 'THA.LOC104826071' => 'tha', 'Thecc.01G265200' => 'tca', 'Thecc.01G265300' => 'tca', 'Thecc.01G265700' => 'tca', 'Thecc.03G109100' => 'tca', 'Thecc.04G245900' => 'tca', 'Thecc.04G246000' => 'tca', 'Thhalv10003334m.g' => 'esa', 'Thhalv10005508m.g' => 'esa', 'Thhalv10005643m.g' => 'esa', 'Thhalv10007316m.g' => 'esa', 'Thhalv10009006m.g' => 'esa', 'Thhalv10009309m.g' => 'esa', 'Thhalv10014917m.g' => 'esa', 'Thhalv10014919m.g' => 'esa', 'Thhalv10015393m.g' => 'esa', 'Thhalv10016515m.g' => 'esa', 'Thhalv10029242m.g' => 'esa', 'TPR.G16654' => 'tpr', 'TPR.G20589' => 'tpr', 'TPR.G23029' => 'tpr', 'TPR.G27731' => 'tpr', 'TPR.G28889' => 'tpr', 'TPR.G28899' => 'tpr', 'TPR.G30846' => 'tpr', 'TPR.G5452' => 'tpr', 'TPR.G5713' => 'tpr', 'TPR.G9046' => 'tpr', 'TPR.G9061' => 'tpr', 'TWI09G1075' => 'twi', 'TWI12G0806' => 'twi', 'TWI18G0108' => 'twi', 'TWI53G1361' => 'twi', 'TWI73G0185' => 'twi', 'TWI73G0427' => 'twi', 'unitig_37.g12001' => 'ugi', 'unitig_747.g21660' => 'ugi', 'unitig_748.g7232' => 'ugi', 'unitig_748.g7315' => 'ugi', 'unitig_85.g27262' => 'ugi', 'unitig_92.g28220' => 'ugi', 'vmacro02632' => 'vma', 'vmacro08410' => 'vma', 'vmacro08411' => 'vma', 'vmacro15407' => 'vma', 'VMungo0251G3619' => 'vmu', 'VMungo0720G1204' => 'vmu', 'VMungo0720G1918' => 'vmu', 'VMungo0720G2387' => 'vmu', 'VMungo0720G2961' => 'vmu', 'VMungo1215G2154' => 'vmu', 'VMungo1383G2411' => 'vmu', 'Zm00001eb051130' => 'zma', 'Zm00001eb116830' => 'zma', 'Zm00001eb116850' => 'zma', 'Zm00001eb151740' => 'zma', 'Zm00001eb292360' => 'zma', 'Zm00001eb301640' => 'zma' ) $gf_id = 'HOM05D000856' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000856' ) $data_identifier = 'HOM05D000856' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 13, 'ath' => (int) 10, 'atr' => (int) 1, 'acertr' => (int) 8, 'cqu' => (int) 6, 'bca' => (int) 21, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 11, 'car' => (int) 9, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 8, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 5, 'fan' => (int) 16, 'fve' => (int) 6, 'gma' => (int) 11, 'ghi' => (int) 19, 'gra' => (int) 9, 'vvi' => (int) 7, 'han' => (int) 17, 'cav' => (int) 5, 'hma' => (int) 2, 'vpl' => (int) 2, 'sun' => (int) 7, 'lal' => (int) 9, 'lja' => (int) 5, 'lonja' => (int) 9, 'lsa' => (int) 5, 'mes' => (int) 8, 'mpo' => (int) 3, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 10, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 15, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 9, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 9, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 6, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 5, 'spa' => (int) 10, 'tar' => (int) 10, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 11, 'tpr' => (int) 11, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 4, 'vmu' => (int) 7, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb301640' $species_info = array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ) $local_species = 'chi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000856', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p00010' => 'bna', 'A03p04160' => 'bna', 'A03p17160' => 'bna', 'A04p23370' => 'bna', 'A05p14860' => 'bna', 'A08p37020' => 'bna', 'A09p08050' => 'bna', 'A09p66800' => 'bna', 'A09p67940' => 'bna', 'A10p02680' => 'bna', 'A10p05320' => 'bna', 'Aa31LG1G20560' => 'aar', 'Aa31LG1G20610' => 'aar', 'Aa31LG1G7810' => 'aar', 'Aa31LG5G3590' => 'aar', 'Aa31LG5G6140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3819' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4683' => 'aag', 'Actinidia04480' => 'ach', 'Actinidia05466' => 'ach', 'Actinidia08445' => 'ach', 'Actinidia21170' => 'ach', 'Actinidia24812' => 'ach', 'Actinidia24951' => 'ach', 'Actinidia40088' => 'ach', 'Ah.02g111660' => 'amhyb', 'Ah.11g048900' => 'amhyb', 'Ah.11g049910' => 'amhyb', 'AL1G13870' => 'aly', 'AL1G13880' => 'aly', 'AL1G16760' => 'aly', 'AL390U10020' => 'aly', 'AL4G25520' => 'aly', 'AL6G19890' => 'aly', 'AL6G19900' => 'aly', 'AL6G19910' => 'aly', 'AL8G40100' => 'aly', 'Aqoxy2G03562' => 'aox', 'Aqoxy5G00316' => 'aox', 'Aqoxy5G00926' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1628KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1H403S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2FU6SJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.882I6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8YRY2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YN1SN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AF70II' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZA8L1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F916KL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHRD8H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KTZ8QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S22EMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8M29T' => 'arhy', 'AT1G04270' => 'ath', 'AT1G04280' => 'ath', 'AT1G06750' => 'ath', 'AT1G33850' => 'ath', 'AT2G30630' => 'ath', 'AT5G09490' => 'ath', 'AT5G09500' => 'ath', 'AT5G09510' => 'ath', 'AT5G43640' => 'ath', 'AT5G63070' => 'ath', 'ATR0605G315' => 'atr', 'Atru.chr11.175' => 'acertr', 'Atru.chr11.653' => 'acertr', 'Atru.chr3.1616' => 'acertr', 'Atru.chr4.2230' => 'acertr', 'Atru.chr4.2232' => 'acertr', 'Atru.chr5.1598' => 'acertr', 'Atru.chr5.1600' => 'acertr', 'Atru.chr5.2188' => 'acertr', 'AUR62008326' => 'cqu', 'AUR62011922' => 'cqu', 'AUR62011924' => 'cqu', 'AUR62021771' => 'cqu', 'AUR62032237' => 'cqu', 'AUR62032240' => 'cqu', 'BcaB01g05572' => 'bca', 'BcaB02g10337' => 'bca', 'BcaB04g19944' => 'bca', 'BcaB05g21548' => 'bca', 'BcaB05g21549' => 'bca', 'BcaB05g23227' => 'bca', 'BcaB06g26256' => 'bca', 'BcaB06g26257' => 'bca', 'BcaB06g28379' => 'bca', 'BcaC02g11159' => 'bca', 'BcaC03g13258' => 'bca', 'BcaC03g13259' => 'bca', 'BcaC05g24456' => 'bca', 'BcaC05g24457' => 'bca', 'BcaC07g36922' => 'bca', 'BcaC07g36923' => 'bca', 'BcaC07g42050' => 'bca', 'BcaC07g42176' => 'bca', 'BcaC07g42195' => 'bca', 'BcaC07g42196' => 'bca', 'BcaNung06674' => 'bca', 'BolC2t06351H' => 'bol', 'BolC2t06352H' => 'bol', 'BolC3t12993H' => 'bol', 'BolC4t23525H' => 'bol', 'BolC4t27475H' => 'bol', 'BolC5t29025H' => 'bol', 'BolC5t29026H' => 'bol', 'BolC8t46898H' => 'bol', 'BolC8t46899H' => 'bol', 'BolC8t52630H' => 'bol', 'BolC8t52765H' => 'bol', 'BolC9t53824H' => 'bol', 'BraA03t09760Z' => 'bra', 'BraA03t10990Z' => 'bra', 'BraA05t20413Z' => 'bra', 'BraA08t35602Z' => 'bra', 'BraA09t36458Z' => 'bra', 'BraA09t42018Z' => 'bra', 'BraA09t42129Z' => 'bra', 'BraA10t42536Z' => 'bra', 'BraA10t42537Z' => 'bra', 'C01p10690' => 'bna', 'C02p03890' => 'bna', 'C02p03900' => 'bna', 'C03p04620' => 'bna', 'C04p19870' => 'bna', 'C04p59670' => 'bna', 'C05p02460' => 'bna', 'C05p02470' => 'bna', 'C08p00980' => 'bna', 'C08p00990' => 'bna', 'C08p51030' => 'bna', 'C08p52360' => 'bna', 'C09p09120' => 'bna', 'CAN.G19.15' => 'can', 'CAN.G251.10' => 'can', 'CAN.G251.9' => 'can', 'CAN.G398.24' => 'can', 'CAN.G410.32' => 'can', 'CAN.G881.2' => 'can', 'CANSAT01G3025' => 'cansat', 'CANSAT78G1211' => 'cansat', 'CANSAT78G1218' => 'cansat', 'CANSAT78G1521' => 'cansat', 'CANSAT78G1670' => 'cansat', 'CARHR003600' => 'chi', 'CARHR003610' => 'chi', 'CARHR006290' => 'chi', 'CARHR006430' => 'chi', 'CARHR124110' => 'chi', 'CARHR203870' => 'chi', 'CARHR203880' => 'chi', 'CARHR203890' => 'chi', 'CARHR276880' => 'chi', 'Carub.0001s0346' => 'cru', 'Carub.0001s0347' => 'cru', 'Carub.0001s0607' => 'cru', 'Carub.0003s2768' => 'cru', 'Carub.0003s2769' => 'cru', 'Carub.0004s1178' => 'cru', 'Carub.0006s0806' => 'cru', 'Carub.0006s0807' => 'cru', 'Carub.0006s0808' => 'cru', 'Carub.0008s0501' => 'cru', 'Carub.0008s2379' => 'cru', 'Ca_08655_v3' => 'car', 'Ca_08922_v3' => 'car', 'Ca_08923_v3' => 'car', 'Ca_09119_v3' => 'car', 'Ca_09703_v3' => 'car', 'Ca_09705_v3' => 'car', 'Ca_09835_v3' => 'car', 'Ca_26403_v3' => 'car', 'Ca_30719_v3' => 'car', 'CBR_g17958' => 'cbr', 'CBR_g40516' => 'cbr', 'Cc00_g05350' => 'ccan', 'Cc01_g18690' => 'ccan', 'Cc03_g04830' => 'ccan', 'Cc03_g04850' => 'ccan', 'CDE02G4469' => 'cde', 'CDE06G0883' => 'cde', 'CDE06G1295' => 'cde', 'CDE06G1390' => 'cde', 'CDE07G0584' => 'cde', 'CDE07G1084' => 'cde', 'CDE08G1259' => 'cde', 'Cfa002341' => 'cfa', 'Cfa024337' => 'cfa', 'Ciclev10004749m.g' => 'ccl', 'Ciclev10006127m.g' => 'ccl', 'Ciclev10019720m.g' => 'ccl', 'Ciclev10022652m.g' => 'ccl', 'CiPaw.01G190400' => 'cil', 'CiPaw.01G190500' => 'cil', 'CiPaw.02G116400' => 'cil', 'CiPaw.02G116500' => 'cil', 'CiPaw.04G183000' => 'cil', 'CiPaw.04G183300' => 'cil', 'ClCG05G004610' => 'cla', 'ClCG05G004620' => 'cla', 'ClCG06G006730' => 'cla', 'ClCG06G006740' => 'cla', 'ClCG11G003690' => 'cla', 'COL.COLO4_08276' => 'col', 'COL.COLO4_08277' => 'col', 'COL.COLO4_15787' => 'col', 'COL.COLO4_15789' => 'col', 'Cpa.g.c44815' => 'cpa', 'Cpa.g.sc52.144' => 'cpa', 'Cpa.g.sc58.46' => 'cpa', 'Cpa.g.sc58.47' => 'cpa', 'Cre08.g360900' => 'cre', 'CsaV3_2G013030' => 'csa', 'CsaV3_2G013050' => 'csa', 'CsaV3_2G015620' => 'csa', 'CsaV3_3G012590' => 'csa', 'CsaV3_3G012600' => 'csa', 'CSS0001641' => 'camsi', 'CSS0008310' => 'camsi', 'CSS0013011' => 'camsi', 'CSS0017147' => 'camsi', 'CSS0022970' => 'camsi', 'CSS0025655' => 'camsi', 'CSS0028665' => 'camsi', 'CSS0029117' => 'camsi', 'CSS0032024' => 'camsi', 'CSS0039681' => 'camsi', 'CSS0046516' => 'camsi', 'CSS0050307' => 'camsi', 'DCAR_005871' => 'dca', 'DCAR_007342' => 'dca', 'DCAR_024228' => 'dca', 'DCAR_027277' => 'dca', 'DCAR_030718' => 'dca', 'Dinv20287' => 'din', 'Dinv22461' => 'din', 'Dinv22464' => 'din', 'Dinv29912' => 'din', 'Dinv29913' => 'din', 'Dinv34580' => 'din', 'Dinv34582' => 'din', 'Dinv44632' => 'din', 'Duzib052G0266' => 'dzi', 'Duzib133G0907' => 'dzi', 'Duzib133G1034' => 'dzi', 'Duzib138G0207' => 'dzi', 'Duzib138G0491' => 'dzi', 'Duzib151G0812' => 'dzi', 'Duzib151G1166' => 'dzi', 'Duzib168G0192' => 'dzi', 'Duzib211G0077' => 'dzi', 'Duzib212G0429' => 'dzi', 'Duzib212G0472' => 'dzi', 'ECA233G2617' => 'eca', 'ECA236G4188' => 'eca', 'ECA240G0936' => 'eca', 'ECA240G1129' => 'eca', 'ECA247G0623' => 'eca', 'EL10Ac5g10451' => 'bvu', 'EL10Ac5g10453' => 'bvu', 'EL10Ac5g10894' => 'bvu', 'Eucgr.H00192' => 'egr', 'Eucgr.H00193' => 'egr', 'Eucgr.H00194' => 'egr', 'Eucgr.J01562' => 'egr', 'Eucgr.K03301' => 'egr', 'FAN02G0632' => 'fan', 'FAN05G5378' => 'fan', 'FAN09G3247' => 'fan', 'FAN12G0435' => 'fan', 'FAN12G2426' => 'fan', 'FAN14G1707' => 'fan', 'FAN14G4725' => 'fan', 'FAN15G2071' => 'fan', 'FAN17G3065' => 'fan', 'FAN19G1376' => 'fan', 'FAN20G0354' => 'fan', 'FAN20G2429' => 'fan', 'FAN20G2658' => 'fan', 'FAN24G2343' => 'fan', 'FAN27G2362' => 'fan', 'FAN28G1765' => 'fan', 'FvH4_1g16020' => 'fve', 'FvH4_2g04890' => 'fve', 'FvH4_2g22270' => 'fve', 'FvH4_4g02630' => 'fve', 'FvH4_4g02640' => 'fve', 'FvH4_6g02650' => 'fve', 'Glyma.02G140600' => 'gma', 'Glyma.03G159900' => 'gma', 'Glyma.05G234800' => 'gma', 'Glyma.07G269600' => 'gma', 'Glyma.08G042300' => 'gma', 'Glyma.10G033500' => 'gma', 'Glyma.10G185200' => 'gma', 'Glyma.17G004300' => 'gma', 'Glyma.19G161900' => 'gma', 'Glyma.20G205100' => 'gma', 'Glyma.20G205200' => 'gma', 'Gohir.A01G139101' => 'ghi', 'Gohir.A02G035600' => 'ghi', 'Gohir.A02G117901' => 'ghi', 'Gohir.A07G210100' => 'ghi', 'Gohir.A07G210200' => 'ghi', 'Gohir.A08G061100' => 'ghi', 'Gohir.A09G223000' => 'ghi', 'Gohir.A09G223100' => 'ghi', 'Gohir.A10G113900' => 'ghi', 'Gohir.A10G114000' => 'ghi', 'Gohir.D02G042300' => 'ghi', 'Gohir.D07G216100' => 'ghi', 'Gohir.D07G216200' => 'ghi', 'Gohir.D08G070400' => 'ghi', 'Gohir.D09G225000' => 'ghi', 'Gohir.D09G225100' => 'ghi', 'Gohir.D10G152300' => 'ghi', 'Gohir.D10G153200' => 'ghi', 'Gohir.D11G133701' => 'ghi', 'Gorai.004G074100' => 'gra', 'Gorai.005G046800' => 'gra', 'Gorai.006G246500' => 'gra', 'Gorai.006G246600' => 'gra', 'Gorai.007G142900' => 'gra', 'Gorai.011G171000' => 'gra', 'Gorai.011G171100' => 'gra', 'Gorai.013G104300' => 'gra', 'Gorai.013G104400' => 'gra', 'GSVIVG01000754001' => 'vvi', 'GSVIVG01000756001' => 'vvi', 'GSVIVG01010903001' => 'vvi', 'GSVIVG01017623001' => 'vvi', 'GSVIVG01018113001' => 'vvi', 'GSVIVG01018116001' => 'vvi', 'GSVIVG01018118001' => 'vvi', 'HanXRQChr03g0076211' => 'han', 'HanXRQChr03g0092431' => 'han', 'HanXRQChr03g0092441' => 'han', 'HanXRQChr03g0092591' => 'han', 'HanXRQChr03g0092671' => 'han', 'HanXRQChr03g0092681' => 'han', 'HanXRQChr03g0092691' => 'han', 'HanXRQChr03g0092701' => 'han', 'HanXRQChr03g0092721' => 'han', 'HanXRQChr03g0092731' => 'han', 'HanXRQChr04g0113681' => 'han', 'HanXRQChr10g0281371' => 'han', 'HanXRQChr11g0337141' => 'han', 'HanXRQChr13g0424521' => 'han', 'HanXRQChr13g0424531' => 'han', 'HanXRQChr13g0424541' => 'han', 'HanXRQChr16g0498221' => 'han', 'Haze_04377' => 'cav', 'Haze_11298' => 'cav', 'Haze_24547' => 'cav', 'Haze_24550' => 'cav', 'Haze_26587' => 'cav', 'Hma1.2p1_0650F.1_g195410' => 'hma', 'Hma1.2p1_0893F.1_g233470' => 'hma', 'HPP92_006508' => 'vpl', 'HPP92_024780' => 'vpl', 'Hund02688' => 'sun', 'Hund09380' => 'sun', 'Hund09381' => 'sun', 'Hund09832' => 'sun', 'Hund09833' => 'sun', 'Hund11351' => 'sun', 'Hund11513' => 'sun', 'Lalb_Chr06g0162591' => 'lal', 'Lalb_Chr06g0162601' => 'lal', 'Lalb_Chr06g0169321' => 'lal', 'Lalb_Chr09g0330951' => 'lal', 'Lalb_Chr16g0387631' => 'lal', 'Lalb_Chr21g0306241' => 'lal', 'Lalb_Chr25g0290051' => 'lal', 'Lalb_Chr25g0290061' => 'lal', 'Lalb_Chr25g0290071' => 'lal', 'Lj1g0003876' => 'lja', 'Lj1P1207T36' => 'lonja', 'Lj2C1156G12' => 'lonja', 'Lj3A793G39' => 'lonja', 'Lj3C580G2' => 'lonja', 'Lj3C780G2' => 'lonja', 'Lj3C780T4' => 'lonja', 'Lj3C793G9' => 'lonja', 'Lj4g0012960' => 'lja', 'Lj5g0021252' => 'lja', 'Lj5g0021484' => 'lja', 'Lj5g0024528' => 'lja', 'Lj6A399T12' => 'lonja', 'Lj6A656G65' => 'lonja', 'Lsat_1_v5_gn_3_125500' => 'lsa', 'Lsat_1_v5_gn_3_125540' => 'lsa', 'Lsat_1_v5_gn_5_72701' => 'lsa', 'Lsat_1_v5_gn_8_91560' => 'lsa', 'Lsat_1_v5_gn_9_9640' => 'lsa', 'Manes.01G200600' => 'mes', 'Manes.01G200700' => 'mes', 'Manes.03G168900' => 'mes', 'Manes.03G169000' => 'mes', 'Manes.05G085801' => 'mes', 'Manes.05G086200' => 'mes', 'Manes.15G036700' => 'mes', 'Manes.15G036900' => 'mes', 'Mapoly0004s0172' => 'mpo', 'Mapoly0023s0001' => 'mpo', 'Mapoly0142s0012' => 'mpo', 'MBI01_g32854_MAGBIO' => 'mbi', 'MBI11_g24427_MAGBIO' => 'mbi', 'MBI11_g47319_MAGBIO' => 'mbi', 'MCO01G433' => 'mco', 'MD00G1187800' => 'mdo', 'MD04G1226500' => 'mdo', 'MD05G1203900' => 'mdo', 'MD10G1191100' => 'mdo', 'MD12G1243500' => 'mdo', 'MD13G1207000' => 'mdo', 'MD13G1207100' => 'mdo', 'MD16G1208600' => 'mdo', 'Medtr1g050352' => 'mtr', 'Medtr1g070385' => 'mtr', 'Medtr1g070450' => 'mtr', 'Medtr1g075200' => 'mtr', 'Medtr1g075250' => 'mtr', 'Medtr1g075260' => 'mtr', 'Medtr1g475250' => 'mtr', 'Medtr4g075450' => 'mtr', 'Medtr7g096300' => 'mtr', 'Medtr8g105110' => 'mtr', 'MELO3C006470.2' => 'cme', 'MELO3C006471.2' => 'cme', 'MELO3C020772.2' => 'cme', 'MELO3C026780.2' => 'cme', 'MELO3C026781.2' => 'cme', 'Migut.D00390' => 'egut', 'Migut.G00435' => 'egut', 'Migut.G00436' => 'egut', 'Migut.G00718' => 'egut', 'MSTRG.21891' => 'ama', 'MSTRG.26910' => 'ama', 'MSTRG.4099' => 'ama', 'MSTRG.9925' => 'ama', 'Nitab4.5_0000165g0010' => 'nta', 'Nitab4.5_0000209g0180' => 'nta', 'Nitab4.5_0000244g0440' => 'nta', 'Nitab4.5_0000525g0220' => 'nta', 'Nitab4.5_0001597g0020' => 'nta', 'Nitab4.5_0001878g0040' => 'nta', 'Nitab4.5_0001878g0060' => 'nta', 'Nitab4.5_0002838g0100' => 'nta', 'Nitab4.5_0002838g0120' => 'nta', 'Nitab4.5_0004798g0030' => 'nta', 'Nitab4.5_0005420g0010' => 'nta', 'Nitab4.5_0005507g0010' => 'nta', 'Nitab4.5_0005574g0020' => 'nta', 'Nitab4.5_0005838g0010' => 'nta', 'Nitab4.5_0010580g0020' => 'nta', 'Nn1g02599' => 'nnu', 'Nn1g02608' => 'nnu', 'Nn3g17742' => 'nnu', 'Nn3g19534' => 'nnu', 'Nn3g19535' => 'nnu', 'Oeu008790.1' => 'oeu', 'Oeu008792.1' => 'oeu', 'Oeu032590.1' => 'oeu', 'Oeu035349.1' => 'oeu', 'Oeu049791.1' => 'oeu', 'Os01g0774500' => 'osa', 'Os03g0628800' => 'osa', 'Os03g0798600' => 'osa', 'Os05g0508800' => 'osa', 'Peaxi162Scf00036g02018' => 'pax', 'Peaxi162Scf00578g00032' => 'pax', 'Peaxi162Scf00578g00317' => 'pax', 'Peaxi162Scf00785g00114' => 'pax', 'Peaxi162Scf00813g00119' => 'pax', 'Peaxi162Scf00906g00227' => 'pax', 'PGR004G0875' => 'pgr', 'PGR004G2424' => 'pgr', 'PGR031G1239' => 'pgr', 'PGR031G2474' => 'pgr', 'PGR044G0423' => 'pgr', 'PGSC0003DMG400001128' => 'stu', 'PGSC0003DMG400007336' => 'stu', 'PGSC0003DMG400016318' => 'stu', 'PGSC0003DMG400016319' => 'stu', 'PGSC0003DMG400018074' => 'stu', 'Phvul.001G157700' => 'pvu', 'Phvul.002G148550' => 'pvu', 'Phvul.002G320200' => 'pvu', 'Phvul.003G089200' => 'pvu', 'Phvul.007G126000' => 'pvu', 'Phvul.007G126100' => 'pvu', 'Phvul.007G178000' => 'pvu', 'Phvul.007G178200' => 'pvu', 'Potri.002G043000' => 'ptr', 'Potri.002G043200' => 'ptr', 'Potri.003G123750' => 'ptr', 'Potri.005G055401' => 'ptr', 'Potri.005G219700' => 'ptr', 'Potri.005G220000' => 'ptr', 'Potri.008G161901' => 'ptr', 'Potri.008G162000' => 'ptr', 'Potri.008G162400' => 'ptr', 'Potri.010G076900' => 'ptr', 'Pp3c12_9180' => 'ppa', 'Pp3c13_19770' => 'ppa', 'Pp3c14_22950' => 'ppa', 'Pp3c16_12160' => 'ppa', 'Pp3c27_7820' => 'ppa', 'Pp3c2_3490' => 'ppa', 'Pp3c3_23700' => 'ppa', 'Pp3c3_36520' => 'ppa', 'Pp3c4_15250' => 'ppa', 'PRCOL_00007002' => 'pco', 'Prupe.1G030600' => 'ppe', 'Prupe.1G030700' => 'ppe', 'Prupe.6G345200' => 'ppe', 'Prupe.8G230300' => 'ppe', 'Prupe.8G230500' => 'ppe', 'Psat3g059600' => 'psa', 'Psat5g200920' => 'psa', 'Psat6g056440' => 'psa', 'Psat6g057360' => 'psa', 'Psat6g134120' => 'psa', 'Psat6g134160' => 'psa', 'Psat7g008640' => 'psa', 'Psat7g185240' => 'psa', 'PSO017G1330' => 'pso', 'PSO063G6097' => 'pso', 'PSO170G0835' => 'pso', 'PSO170G2499' => 'pso', 'PSO210G5058' => 'pso', 'PSO210G6154' => 'pso', 'PSO585G0031' => 'pso', 'PSO832G0264' => 'pso', 'PSO832G4288' => 'pso', 'QL03p027355' => 'qlo', 'QL03p027430' => 'qlo', 'QL04p081380' => 'qlo', 'QL06p015642' => 'qlo', 'QL06p015650' => 'qlo', 'QL06p015686' => 'qlo', 'QL12p042927' => 'qlo', 'QL93p1863_0035' => 'qlo', 'RcHm_v2.0_Chr3g0450581' => 'rch', 'RcHm_v2.0_Chr4g0390371' => 'rch', 'RcHm_v2.0_Chr4g0390381' => 'rch', 'RcHm_v2.0_Chr4g0390491' => 'rch', 'RcHm_v2.0_Chr4g0390501' => 'rch', 'RcHm_v2.0_Chr6g0289231' => 'rch', 'Rhsim04G0190400' => 'rsi', 'Rhsim04G0190500' => 'rsi', 'Rhsim04G0190600' => 'rsi', 'Rhsim13G0031400' => 'rsi', 'Rhsim13G0165600' => 'rsi', 'RhsimUnG0114600' => 'rsi', 'RhsimUnG0114700' => 'rsi', 'Sabra02G0034800' => 'sbr', 'Sabra02G0035100' => 'sbr', 'Sabra05G0168600' => 'sbr', 'Sabra05G0168800' => 'sbr', 'Sabra08G0123700' => 'sbr', 'Sabra10G0031900' => 'sbr', 'Sabra13G0039000' => 'sbr', 'SalBow2G0782' => 'sbo', 'SalBow2G1403' => 'sbo', 'SalBow4G0074' => 'sbo', 'SalBow4G2635' => 'sbo', 'SalBow5G3010' => 'sbo', 'Sc05g0000870' => 'sci', 'Sc05g0000890' => 'sci', 'Sc13g0005000' => 'sci', 'Sc13g0005030' => 'sci', 'Sc19g0003790' => 'sci', 'Sc19g0003800' => 'sci', 'Sed0003467' => 'sed', 'Sed0009355' => 'sed', 'Sed0009894' => 'sed', 'Sed0011972' => 'sed', 'Sed0021483' => 'sed', 'Sed0021750' => 'sed', 'Sed0026279' => 'sed', 'SEGI_05312' => 'sgi', 'SEGI_10112' => 'sgi', 'SEGI_15835' => 'sgi', 'SEGI_30386' => 'sgi', 'SEGI_34122' => 'sgi', 'SEGI_35063' => 'sgi', 'SGA_v2.0_scaffold101G29794' => 'sas', 'SGA_v2.0_scaffold1G00573' => 'sas', 'SGA_v2.0_scaffold79G25637' => 'sas', 'SGA_v2.0_scaffold88G27283' => 'sas', 'SGA_v2.0_scaffold88G27285' => 'sas', 'SGA_v2.0_scaffold88G27331' => 'sas', 'SHI09937' => 'shi', 'SMO119G0302' => 'smo', 'SMO137G0231' => 'smo', 'SMO367G1151' => 'smo', 'Solyc02g082000.3' => 'sly', 'Solyc06g031670.3' => 'sly', 'Solyc06g053810.3' => 'sly', 'Solyc07g025457.1' => 'sly', 'Solyc08g059740.1' => 'sly', 'Solyc08g059750.3' => 'sly', 'Solyc09g083370.3' => 'sly', 'Solyc12g038950.3' => 'sly', 'Sopen02g026630' => 'spe', 'Sopen06g018930' => 'spe', 'Sopen06g018940' => 'spe', 'Sopen08g009460' => 'spe', 'Sopen09g032290' => 'spe', 'Sp1g03080' => 'spa', 'Sp1g03090' => 'spa', 'Sp1g05480' => 'spa', 'Sp2g07860' => 'spa', 'Sp2g08430' => 'spa', 'Sp2g08440' => 'spa', 'Sp2g26200' => 'spa', 'Sp4g13170' => 'spa', 'Sp6g33840' => 'spa', 'SpUn1204_0010' => 'spa', 'TAR365G0908' => 'tar', 'TAR381G1270' => 'tar', 'TAR381G1651' => 'tar', 'TAR625G1131' => 'tar', 'TAR633G0962' => 'tar', 'TAR633G1729' => 'tar', 'TAR633G1864' => 'tar', 'TAR636G0221' => 'tar', 'TAR636G0314' => 'tar', 'TAR636G3202' => 'tar', 'THA.LOC104800805' => 'tha', 'THA.LOC104801096' => 'tha', 'THA.LOC104801555' => 'tha', 'THA.LOC104808491' => 'tha', 'THA.LOC104808595' => 'tha', 'THA.LOC104815985' => 'tha', 'THA.LOC104822250' => 'tha', 'THA.LOC104826071' => 'tha', 'Thecc.01G265200' => 'tca', 'Thecc.01G265300' => 'tca', 'Thecc.01G265700' => 'tca', 'Thecc.03G109100' => 'tca', 'Thecc.04G245900' => 'tca', 'Thecc.04G246000' => 'tca', 'Thhalv10003334m.g' => 'esa', 'Thhalv10005508m.g' => 'esa', 'Thhalv10005643m.g' => 'esa', 'Thhalv10007316m.g' => 'esa', 'Thhalv10009006m.g' => 'esa', 'Thhalv10009309m.g' => 'esa', 'Thhalv10014917m.g' => 'esa', 'Thhalv10014919m.g' => 'esa', 'Thhalv10015393m.g' => 'esa', 'Thhalv10016515m.g' => 'esa', 'Thhalv10029242m.g' => 'esa', 'TPR.G16654' => 'tpr', 'TPR.G20589' => 'tpr', 'TPR.G23029' => 'tpr', 'TPR.G27731' => 'tpr', 'TPR.G28889' => 'tpr', 'TPR.G28899' => 'tpr', 'TPR.G30846' => 'tpr', 'TPR.G5452' => 'tpr', 'TPR.G5713' => 'tpr', 'TPR.G9046' => 'tpr', 'TPR.G9061' => 'tpr', 'TWI09G1075' => 'twi', 'TWI12G0806' => 'twi', 'TWI18G0108' => 'twi', 'TWI53G1361' => 'twi', 'TWI73G0185' => 'twi', 'TWI73G0427' => 'twi', 'unitig_37.g12001' => 'ugi', 'unitig_747.g21660' => 'ugi', 'unitig_748.g7232' => 'ugi', 'unitig_748.g7315' => 'ugi', 'unitig_85.g27262' => 'ugi', 'unitig_92.g28220' => 'ugi', 'vmacro02632' => 'vma', 'vmacro08410' => 'vma', 'vmacro08411' => 'vma', 'vmacro15407' => 'vma', 'VMungo0251G3619' => 'vmu', 'VMungo0720G1204' => 'vmu', 'VMungo0720G1918' => 'vmu', 'VMungo0720G2387' => 'vmu', 'VMungo0720G2961' => 'vmu', 'VMungo1215G2154' => 'vmu', 'VMungo1383G2411' => 'vmu', 'Zm00001eb051130' => 'zma', 'Zm00001eb116830' => 'zma', 'Zm00001eb116850' => 'zma', 'Zm00001eb151740' => 'zma', 'Zm00001eb292360' => 'zma', 'Zm00001eb301640' => 'zma' ), 'gf_id' => 'HOM05D000856', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000856' ), 'data_identifier' => 'HOM05D000856', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000856', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p00010' => 'bna', 'A03p04160' => 'bna', 'A03p17160' => 'bna', 'A04p23370' => 'bna', 'A05p14860' => 'bna', 'A08p37020' => 'bna', 'A09p08050' => 'bna', 'A09p66800' => 'bna', 'A09p67940' => 'bna', 'A10p02680' => 'bna', 'A10p05320' => 'bna', 'Aa31LG1G20560' => 'aar', 'Aa31LG1G20610' => 'aar', 'Aa31LG1G7810' => 'aar', 'Aa31LG5G3590' => 'aar', 'Aa31LG5G6140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3819' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4683' => 'aag', 'Actinidia04480' => 'ach', 'Actinidia05466' => 'ach', 'Actinidia08445' => 'ach', 'Actinidia21170' => 'ach', 'Actinidia24812' => 'ach', 'Actinidia24951' => 'ach', 'Actinidia40088' => 'ach', 'Ah.02g111660' => 'amhyb', 'Ah.11g048900' => 'amhyb', 'Ah.11g049910' => 'amhyb', 'AL1G13870' => 'aly', 'AL1G13880' => 'aly', 'AL1G16760' => 'aly', 'AL390U10020' => 'aly', 'AL4G25520' => 'aly', 'AL6G19890' => 'aly', 'AL6G19900' => 'aly', 'AL6G19910' => 'aly', 'AL8G40100' => 'aly', 'Aqoxy2G03562' => 'aox', 'Aqoxy5G00316' => 'aox', 'Aqoxy5G00926' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1628KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1H403S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2FU6SJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.882I6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8YRY2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YN1SN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AF70II' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZA8L1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F916KL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHRD8H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KTZ8QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S22EMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8M29T' => 'arhy', 'AT1G04270' => 'ath', 'AT1G04280' => 'ath', 'AT1G06750' => 'ath', 'AT1G33850' => 'ath', 'AT2G30630' => 'ath', 'AT5G09490' => 'ath', 'AT5G09500' => 'ath', 'AT5G09510' => 'ath', 'AT5G43640' => 'ath', 'AT5G63070' => 'ath', 'ATR0605G315' => 'atr', 'Atru.chr11.175' => 'acertr', 'Atru.chr11.653' => 'acertr', 'Atru.chr3.1616' => 'acertr', 'Atru.chr4.2230' => 'acertr', 'Atru.chr4.2232' => 'acertr', 'Atru.chr5.1598' => 'acertr', 'Atru.chr5.1600' => 'acertr', 'Atru.chr5.2188' => 'acertr', 'AUR62008326' => 'cqu', 'AUR62011922' => 'cqu', 'AUR62011924' => 'cqu', 'AUR62021771' => 'cqu', 'AUR62032237' => 'cqu', 'AUR62032240' => 'cqu', 'BcaB01g05572' => 'bca', 'BcaB02g10337' => 'bca', 'BcaB04g19944' => 'bca', 'BcaB05g21548' => 'bca', 'BcaB05g21549' => 'bca', 'BcaB05g23227' => 'bca', 'BcaB06g26256' => 'bca', 'BcaB06g26257' => 'bca', 'BcaB06g28379' => 'bca', 'BcaC02g11159' => 'bca', 'BcaC03g13258' => 'bca', 'BcaC03g13259' => 'bca', 'BcaC05g24456' => 'bca', 'BcaC05g24457' => 'bca', 'BcaC07g36922' => 'bca', 'BcaC07g36923' => 'bca', 'BcaC07g42050' => 'bca', 'BcaC07g42176' => 'bca', 'BcaC07g42195' => 'bca', 'BcaC07g42196' => 'bca', 'BcaNung06674' => 'bca', 'BolC2t06351H' => 'bol', 'BolC2t06352H' => 'bol', 'BolC3t12993H' => 'bol', 'BolC4t23525H' => 'bol', 'BolC4t27475H' => 'bol', 'BolC5t29025H' => 'bol', 'BolC5t29026H' => 'bol', 'BolC8t46898H' => 'bol', 'BolC8t46899H' => 'bol', 'BolC8t52630H' => 'bol', 'BolC8t52765H' => 'bol', 'BolC9t53824H' => 'bol', 'BraA03t09760Z' => 'bra', 'BraA03t10990Z' => 'bra', 'BraA05t20413Z' => 'bra', 'BraA08t35602Z' => 'bra', 'BraA09t36458Z' => 'bra', 'BraA09t42018Z' => 'bra', 'BraA09t42129Z' => 'bra', 'BraA10t42536Z' => 'bra', 'BraA10t42537Z' => 'bra', 'C01p10690' => 'bna', 'C02p03890' => 'bna', 'C02p03900' => 'bna', 'C03p04620' => 'bna', 'C04p19870' => 'bna', 'C04p59670' => 'bna', 'C05p02460' => 'bna', 'C05p02470' => 'bna', 'C08p00980' => 'bna', 'C08p00990' => 'bna', 'C08p51030' => 'bna', 'C08p52360' => 'bna', 'C09p09120' => 'bna', 'CAN.G19.15' => 'can', 'CAN.G251.10' => 'can', 'CAN.G251.9' => 'can', 'CAN.G398.24' => 'can', 'CAN.G410.32' => 'can', 'CAN.G881.2' => 'can', 'CANSAT01G3025' => 'cansat', 'CANSAT78G1211' => 'cansat', 'CANSAT78G1218' => 'cansat', 'CANSAT78G1521' => 'cansat', 'CANSAT78G1670' => 'cansat', 'CARHR003600' => 'chi', 'CARHR003610' => 'chi', 'CARHR006290' => 'chi', 'CARHR006430' => 'chi', 'CARHR124110' => 'chi', 'CARHR203870' => 'chi', 'CARHR203880' => 'chi', 'CARHR203890' => 'chi', 'CARHR276880' => 'chi', 'Carub.0001s0346' => 'cru', 'Carub.0001s0347' => 'cru', 'Carub.0001s0607' => 'cru', 'Carub.0003s2768' => 'cru', 'Carub.0003s2769' => 'cru', 'Carub.0004s1178' => 'cru', 'Carub.0006s0806' => 'cru', 'Carub.0006s0807' => 'cru', 'Carub.0006s0808' => 'cru', 'Carub.0008s0501' => 'cru', 'Carub.0008s2379' => 'cru', 'Ca_08655_v3' => 'car', 'Ca_08922_v3' => 'car', 'Ca_08923_v3' => 'car', 'Ca_09119_v3' => 'car', 'Ca_09703_v3' => 'car', 'Ca_09705_v3' => 'car', 'Ca_09835_v3' => 'car', 'Ca_26403_v3' => 'car', 'Ca_30719_v3' => 'car', 'CBR_g17958' => 'cbr', 'CBR_g40516' => 'cbr', 'Cc00_g05350' => 'ccan', 'Cc01_g18690' => 'ccan', 'Cc03_g04830' => 'ccan', 'Cc03_g04850' => 'ccan', 'CDE02G4469' => 'cde', 'CDE06G0883' => 'cde', 'CDE06G1295' => 'cde', 'CDE06G1390' => 'cde', 'CDE07G0584' => 'cde', 'CDE07G1084' => 'cde', 'CDE08G1259' => 'cde', 'Cfa002341' => 'cfa', 'Cfa024337' => 'cfa', 'Ciclev10004749m.g' => 'ccl', 'Ciclev10006127m.g' => 'ccl', 'Ciclev10019720m.g' => 'ccl', 'Ciclev10022652m.g' => 'ccl', 'CiPaw.01G190400' => 'cil', 'CiPaw.01G190500' => 'cil', 'CiPaw.02G116400' => 'cil', 'CiPaw.02G116500' => 'cil', 'CiPaw.04G183000' => 'cil', 'CiPaw.04G183300' => 'cil', 'ClCG05G004610' => 'cla', 'ClCG05G004620' => 'cla', 'ClCG06G006730' => 'cla', 'ClCG06G006740' => 'cla', 'ClCG11G003690' => 'cla', 'COL.COLO4_08276' => 'col', 'COL.COLO4_08277' => 'col', 'COL.COLO4_15787' => 'col', 'COL.COLO4_15789' => 'col', 'Cpa.g.c44815' => 'cpa', 'Cpa.g.sc52.144' => 'cpa', 'Cpa.g.sc58.46' => 'cpa', 'Cpa.g.sc58.47' => 'cpa', 'Cre08.g360900' => 'cre', 'CsaV3_2G013030' => 'csa', 'CsaV3_2G013050' => 'csa', 'CsaV3_2G015620' => 'csa', 'CsaV3_3G012590' => 'csa', 'CsaV3_3G012600' => 'csa', 'CSS0001641' => 'camsi', 'CSS0008310' => 'camsi', 'CSS0013011' => 'camsi', 'CSS0017147' => 'camsi', 'CSS0022970' => 'camsi', 'CSS0025655' => 'camsi', 'CSS0028665' => 'camsi', 'CSS0029117' => 'camsi', 'CSS0032024' => 'camsi', 'CSS0039681' => 'camsi', 'CSS0046516' => 'camsi', 'CSS0050307' => 'camsi', 'DCAR_005871' => 'dca', 'DCAR_007342' => 'dca', 'DCAR_024228' => 'dca', 'DCAR_027277' => 'dca', 'DCAR_030718' => 'dca', 'Dinv20287' => 'din', 'Dinv22461' => 'din', 'Dinv22464' => 'din', 'Dinv29912' => 'din', 'Dinv29913' => 'din', 'Dinv34580' => 'din', 'Dinv34582' => 'din', 'Dinv44632' => 'din', 'Duzib052G0266' => 'dzi', 'Duzib133G0907' => 'dzi', 'Duzib133G1034' => 'dzi', 'Duzib138G0207' => 'dzi', 'Duzib138G0491' => 'dzi', 'Duzib151G0812' => 'dzi', 'Duzib151G1166' => 'dzi', 'Duzib168G0192' => 'dzi', 'Duzib211G0077' => 'dzi', 'Duzib212G0429' => 'dzi', 'Duzib212G0472' => 'dzi', 'ECA233G2617' => 'eca', 'ECA236G4188' => 'eca', 'ECA240G0936' => 'eca', 'ECA240G1129' => 'eca', 'ECA247G0623' => 'eca', 'EL10Ac5g10451' => 'bvu', 'EL10Ac5g10453' => 'bvu', 'EL10Ac5g10894' => 'bvu', 'Eucgr.H00192' => 'egr', 'Eucgr.H00193' => 'egr', 'Eucgr.H00194' => 'egr', 'Eucgr.J01562' => 'egr', 'Eucgr.K03301' => 'egr', 'FAN02G0632' => 'fan', 'FAN05G5378' => 'fan', 'FAN09G3247' => 'fan', 'FAN12G0435' => 'fan', 'FAN12G2426' => 'fan', 'FAN14G1707' => 'fan', 'FAN14G4725' => 'fan', 'FAN15G2071' => 'fan', 'FAN17G3065' => 'fan', 'FAN19G1376' => 'fan', 'FAN20G0354' => 'fan', 'FAN20G2429' => 'fan', 'FAN20G2658' => 'fan', 'FAN24G2343' => 'fan', 'FAN27G2362' => 'fan', 'FAN28G1765' => 'fan', 'FvH4_1g16020' => 'fve', 'FvH4_2g04890' => 'fve', 'FvH4_2g22270' => 'fve', 'FvH4_4g02630' => 'fve', 'FvH4_4g02640' => 'fve', 'FvH4_6g02650' => 'fve', 'Glyma.02G140600' => 'gma', 'Glyma.03G159900' => 'gma', 'Glyma.05G234800' => 'gma', 'Glyma.07G269600' => 'gma', 'Glyma.08G042300' => 'gma', 'Glyma.10G033500' => 'gma', 'Glyma.10G185200' => 'gma', 'Glyma.17G004300' => 'gma', 'Glyma.19G161900' => 'gma', 'Glyma.20G205100' => 'gma', 'Glyma.20G205200' => 'gma', 'Gohir.A01G139101' => 'ghi', 'Gohir.A02G035600' => 'ghi', 'Gohir.A02G117901' => 'ghi', 'Gohir.A07G210100' => 'ghi', 'Gohir.A07G210200' => 'ghi', 'Gohir.A08G061100' => 'ghi', 'Gohir.A09G223000' => 'ghi', 'Gohir.A09G223100' => 'ghi', 'Gohir.A10G113900' => 'ghi', 'Gohir.A10G114000' => 'ghi', 'Gohir.D02G042300' => 'ghi', 'Gohir.D07G216100' => 'ghi', 'Gohir.D07G216200' => 'ghi', 'Gohir.D08G070400' => 'ghi', 'Gohir.D09G225000' => 'ghi', 'Gohir.D09G225100' => 'ghi', 'Gohir.D10G152300' => 'ghi', 'Gohir.D10G153200' => 'ghi', 'Gohir.D11G133701' => 'ghi', 'Gorai.004G074100' => 'gra', 'Gorai.005G046800' => 'gra', 'Gorai.006G246500' => 'gra', 'Gorai.006G246600' => 'gra', 'Gorai.007G142900' => 'gra', 'Gorai.011G171000' => 'gra', 'Gorai.011G171100' => 'gra', 'Gorai.013G104300' => 'gra', 'Gorai.013G104400' => 'gra', 'GSVIVG01000754001' => 'vvi', 'GSVIVG01000756001' => 'vvi', 'GSVIVG01010903001' => 'vvi', 'GSVIVG01017623001' => 'vvi', 'GSVIVG01018113001' => 'vvi', 'GSVIVG01018116001' => 'vvi', 'GSVIVG01018118001' => 'vvi', 'HanXRQChr03g0076211' => 'han', 'HanXRQChr03g0092431' => 'han', 'HanXRQChr03g0092441' => 'han', 'HanXRQChr03g0092591' => 'han', 'HanXRQChr03g0092671' => 'han', 'HanXRQChr03g0092681' => 'han', 'HanXRQChr03g0092691' => 'han', 'HanXRQChr03g0092701' => 'han', 'HanXRQChr03g0092721' => 'han', 'HanXRQChr03g0092731' => 'han', 'HanXRQChr04g0113681' => 'han', 'HanXRQChr10g0281371' => 'han', 'HanXRQChr11g0337141' => 'han', 'HanXRQChr13g0424521' => 'han', 'HanXRQChr13g0424531' => 'han', 'HanXRQChr13g0424541' => 'han', 'HanXRQChr16g0498221' => 'han', 'Haze_04377' => 'cav', 'Haze_11298' => 'cav', 'Haze_24547' => 'cav', 'Haze_24550' => 'cav', 'Haze_26587' => 'cav', 'Hma1.2p1_0650F.1_g195410' => 'hma', 'Hma1.2p1_0893F.1_g233470' => 'hma', 'HPP92_006508' => 'vpl', 'HPP92_024780' => 'vpl', 'Hund02688' => 'sun', 'Hund09380' => 'sun', 'Hund09381' => 'sun', 'Hund09832' => 'sun', 'Hund09833' => 'sun', 'Hund11351' => 'sun', 'Hund11513' => 'sun', 'Lalb_Chr06g0162591' => 'lal', 'Lalb_Chr06g0162601' => 'lal', 'Lalb_Chr06g0169321' => 'lal', 'Lalb_Chr09g0330951' => 'lal', 'Lalb_Chr16g0387631' => 'lal', 'Lalb_Chr21g0306241' => 'lal', 'Lalb_Chr25g0290051' => 'lal', 'Lalb_Chr25g0290061' => 'lal', 'Lalb_Chr25g0290071' => 'lal', 'Lj1g0003876' => 'lja', 'Lj1P1207T36' => 'lonja', 'Lj2C1156G12' => 'lonja', 'Lj3A793G39' => 'lonja', 'Lj3C580G2' => 'lonja', 'Lj3C780G2' => 'lonja', 'Lj3C780T4' => 'lonja', 'Lj3C793G9' => 'lonja', 'Lj4g0012960' => 'lja', 'Lj5g0021252' => 'lja', 'Lj5g0021484' => 'lja', 'Lj5g0024528' => 'lja', 'Lj6A399T12' => 'lonja', 'Lj6A656G65' => 'lonja', 'Lsat_1_v5_gn_3_125500' => 'lsa', 'Lsat_1_v5_gn_3_125540' => 'lsa', 'Lsat_1_v5_gn_5_72701' => 'lsa', 'Lsat_1_v5_gn_8_91560' => 'lsa', 'Lsat_1_v5_gn_9_9640' => 'lsa', 'Manes.01G200600' => 'mes', 'Manes.01G200700' => 'mes', 'Manes.03G168900' => 'mes', 'Manes.03G169000' => 'mes', 'Manes.05G085801' => 'mes', 'Manes.05G086200' => 'mes', 'Manes.15G036700' => 'mes', 'Manes.15G036900' => 'mes', 'Mapoly0004s0172' => 'mpo', 'Mapoly0023s0001' => 'mpo', 'Mapoly0142s0012' => 'mpo', 'MBI01_g32854_MAGBIO' => 'mbi', 'MBI11_g24427_MAGBIO' => 'mbi', 'MBI11_g47319_MAGBIO' => 'mbi', 'MCO01G433' => 'mco', 'MD00G1187800' => 'mdo', 'MD04G1226500' => 'mdo', 'MD05G1203900' => 'mdo', 'MD10G1191100' => 'mdo', 'MD12G1243500' => 'mdo', 'MD13G1207000' => 'mdo', 'MD13G1207100' => 'mdo', 'MD16G1208600' => 'mdo', 'Medtr1g050352' => 'mtr', 'Medtr1g070385' => 'mtr', 'Medtr1g070450' => 'mtr', 'Medtr1g075200' => 'mtr', 'Medtr1g075250' => 'mtr', 'Medtr1g075260' => 'mtr', 'Medtr1g475250' => 'mtr', 'Medtr4g075450' => 'mtr', 'Medtr7g096300' => 'mtr', 'Medtr8g105110' => 'mtr', 'MELO3C006470.2' => 'cme', 'MELO3C006471.2' => 'cme', 'MELO3C020772.2' => 'cme', 'MELO3C026780.2' => 'cme', 'MELO3C026781.2' => 'cme', 'Migut.D00390' => 'egut', 'Migut.G00435' => 'egut', 'Migut.G00436' => 'egut', 'Migut.G00718' => 'egut', 'MSTRG.21891' => 'ama', 'MSTRG.26910' => 'ama', 'MSTRG.4099' => 'ama', 'MSTRG.9925' => 'ama', 'Nitab4.5_0000165g0010' => 'nta', 'Nitab4.5_0000209g0180' => 'nta', 'Nitab4.5_0000244g0440' => 'nta', 'Nitab4.5_0000525g0220' => 'nta', 'Nitab4.5_0001597g0020' => 'nta', 'Nitab4.5_0001878g0040' => 'nta', 'Nitab4.5_0001878g0060' => 'nta', 'Nitab4.5_0002838g0100' => 'nta', 'Nitab4.5_0002838g0120' => 'nta', 'Nitab4.5_0004798g0030' => 'nta', 'Nitab4.5_0005420g0010' => 'nta', 'Nitab4.5_0005507g0010' => 'nta', 'Nitab4.5_0005574g0020' => 'nta', 'Nitab4.5_0005838g0010' => 'nta', 'Nitab4.5_0010580g0020' => 'nta', 'Nn1g02599' => 'nnu', 'Nn1g02608' => 'nnu', 'Nn3g17742' => 'nnu', 'Nn3g19534' => 'nnu', 'Nn3g19535' => 'nnu', 'Oeu008790.1' => 'oeu', 'Oeu008792.1' => 'oeu', 'Oeu032590.1' => 'oeu', 'Oeu035349.1' => 'oeu', 'Oeu049791.1' => 'oeu', 'Os01g0774500' => 'osa', 'Os03g0628800' => 'osa', 'Os03g0798600' => 'osa', 'Os05g0508800' => 'osa', 'Peaxi162Scf00036g02018' => 'pax', 'Peaxi162Scf00578g00032' => 'pax', 'Peaxi162Scf00578g00317' => 'pax', 'Peaxi162Scf00785g00114' => 'pax', 'Peaxi162Scf00813g00119' => 'pax', 'Peaxi162Scf00906g00227' => 'pax', 'PGR004G0875' => 'pgr', 'PGR004G2424' => 'pgr', 'PGR031G1239' => 'pgr', 'PGR031G2474' => 'pgr', 'PGR044G0423' => 'pgr', 'PGSC0003DMG400001128' => 'stu', 'PGSC0003DMG400007336' => 'stu', 'PGSC0003DMG400016318' => 'stu', 'PGSC0003DMG400016319' => 'stu', 'PGSC0003DMG400018074' => 'stu', 'Phvul.001G157700' => 'pvu', 'Phvul.002G148550' => 'pvu', 'Phvul.002G320200' => 'pvu', 'Phvul.003G089200' => 'pvu', 'Phvul.007G126000' => 'pvu', 'Phvul.007G126100' => 'pvu', 'Phvul.007G178000' => 'pvu', 'Phvul.007G178200' => 'pvu', 'Potri.002G043000' => 'ptr', 'Potri.002G043200' => 'ptr', 'Potri.003G123750' => 'ptr', 'Potri.005G055401' => 'ptr', 'Potri.005G219700' => 'ptr', 'Potri.005G220000' => 'ptr', 'Potri.008G161901' => 'ptr', 'Potri.008G162000' => 'ptr', 'Potri.008G162400' => 'ptr', 'Potri.010G076900' => 'ptr', 'Pp3c12_9180' => 'ppa', 'Pp3c13_19770' => 'ppa', 'Pp3c14_22950' => 'ppa', 'Pp3c16_12160' => 'ppa', 'Pp3c27_7820' => 'ppa', 'Pp3c2_3490' => 'ppa', 'Pp3c3_23700' => 'ppa', 'Pp3c3_36520' => 'ppa', 'Pp3c4_15250' => 'ppa', 'PRCOL_00007002' => 'pco', 'Prupe.1G030600' => 'ppe', 'Prupe.1G030700' => 'ppe', 'Prupe.6G345200' => 'ppe', 'Prupe.8G230300' => 'ppe', 'Prupe.8G230500' => 'ppe', 'Psat3g059600' => 'psa', 'Psat5g200920' => 'psa', 'Psat6g056440' => 'psa', 'Psat6g057360' => 'psa', 'Psat6g134120' => 'psa', 'Psat6g134160' => 'psa', 'Psat7g008640' => 'psa', 'Psat7g185240' => 'psa', 'PSO017G1330' => 'pso', 'PSO063G6097' => 'pso', 'PSO170G0835' => 'pso', 'PSO170G2499' => 'pso', 'PSO210G5058' => 'pso', 'PSO210G6154' => 'pso', 'PSO585G0031' => 'pso', 'PSO832G0264' => 'pso', 'PSO832G4288' => 'pso', 'QL03p027355' => 'qlo', 'QL03p027430' => 'qlo', 'QL04p081380' => 'qlo', 'QL06p015642' => 'qlo', 'QL06p015650' => 'qlo', 'QL06p015686' => 'qlo', 'QL12p042927' => 'qlo', 'QL93p1863_0035' => 'qlo', 'RcHm_v2.0_Chr3g0450581' => 'rch', 'RcHm_v2.0_Chr4g0390371' => 'rch', 'RcHm_v2.0_Chr4g0390381' => 'rch', 'RcHm_v2.0_Chr4g0390491' => 'rch', 'RcHm_v2.0_Chr4g0390501' => 'rch', 'RcHm_v2.0_Chr6g0289231' => 'rch', 'Rhsim04G0190400' => 'rsi', 'Rhsim04G0190500' => 'rsi', 'Rhsim04G0190600' => 'rsi', 'Rhsim13G0031400' => 'rsi', 'Rhsim13G0165600' => 'rsi', 'RhsimUnG0114600' => 'rsi', 'RhsimUnG0114700' => 'rsi', 'Sabra02G0034800' => 'sbr', 'Sabra02G0035100' => 'sbr', 'Sabra05G0168600' => 'sbr', 'Sabra05G0168800' => 'sbr', 'Sabra08G0123700' => 'sbr', 'Sabra10G0031900' => 'sbr', 'Sabra13G0039000' => 'sbr', 'SalBow2G0782' => 'sbo', 'SalBow2G1403' => 'sbo', 'SalBow4G0074' => 'sbo', 'SalBow4G2635' => 'sbo', 'SalBow5G3010' => 'sbo', 'Sc05g0000870' => 'sci', 'Sc05g0000890' => 'sci', 'Sc13g0005000' => 'sci', 'Sc13g0005030' => 'sci', 'Sc19g0003790' => 'sci', 'Sc19g0003800' => 'sci', 'Sed0003467' => 'sed', 'Sed0009355' => 'sed', 'Sed0009894' => 'sed', 'Sed0011972' => 'sed', 'Sed0021483' => 'sed', 'Sed0021750' => 'sed', 'Sed0026279' => 'sed', 'SEGI_05312' => 'sgi', 'SEGI_10112' => 'sgi', 'SEGI_15835' => 'sgi', 'SEGI_30386' => 'sgi', 'SEGI_34122' => 'sgi', 'SEGI_35063' => 'sgi', 'SGA_v2.0_scaffold101G29794' => 'sas', 'SGA_v2.0_scaffold1G00573' => 'sas', 'SGA_v2.0_scaffold79G25637' => 'sas', 'SGA_v2.0_scaffold88G27283' => 'sas', 'SGA_v2.0_scaffold88G27285' => 'sas', 'SGA_v2.0_scaffold88G27331' => 'sas', 'SHI09937' => 'shi', 'SMO119G0302' => 'smo', 'SMO137G0231' => 'smo', 'SMO367G1151' => 'smo', 'Solyc02g082000.3' => 'sly', 'Solyc06g031670.3' => 'sly', 'Solyc06g053810.3' => 'sly', 'Solyc07g025457.1' => 'sly', 'Solyc08g059740.1' => 'sly', 'Solyc08g059750.3' => 'sly', 'Solyc09g083370.3' => 'sly', 'Solyc12g038950.3' => 'sly', 'Sopen02g026630' => 'spe', 'Sopen06g018930' => 'spe', 'Sopen06g018940' => 'spe', 'Sopen08g009460' => 'spe', 'Sopen09g032290' => 'spe', 'Sp1g03080' => 'spa', 'Sp1g03090' => 'spa', 'Sp1g05480' => 'spa', 'Sp2g07860' => 'spa', 'Sp2g08430' => 'spa', 'Sp2g08440' => 'spa', 'Sp2g26200' => 'spa', 'Sp4g13170' => 'spa', 'Sp6g33840' => 'spa', 'SpUn1204_0010' => 'spa', 'TAR365G0908' => 'tar', 'TAR381G1270' => 'tar', 'TAR381G1651' => 'tar', 'TAR625G1131' => 'tar', 'TAR633G0962' => 'tar', 'TAR633G1729' => 'tar', 'TAR633G1864' => 'tar', 'TAR636G0221' => 'tar', 'TAR636G0314' => 'tar', 'TAR636G3202' => 'tar', 'THA.LOC104800805' => 'tha', 'THA.LOC104801096' => 'tha', 'THA.LOC104801555' => 'tha', 'THA.LOC104808491' => 'tha', 'THA.LOC104808595' => 'tha', 'THA.LOC104815985' => 'tha', 'THA.LOC104822250' => 'tha', 'THA.LOC104826071' => 'tha', 'Thecc.01G265200' => 'tca', 'Thecc.01G265300' => 'tca', 'Thecc.01G265700' => 'tca', 'Thecc.03G109100' => 'tca', 'Thecc.04G245900' => 'tca', 'Thecc.04G246000' => 'tca', 'Thhalv10003334m.g' => 'esa', 'Thhalv10005508m.g' => 'esa', 'Thhalv10005643m.g' => 'esa', 'Thhalv10007316m.g' => 'esa', 'Thhalv10009006m.g' => 'esa', 'Thhalv10009309m.g' => 'esa', 'Thhalv10014917m.g' => 'esa', 'Thhalv10014919m.g' => 'esa', 'Thhalv10015393m.g' => 'esa', 'Thhalv10016515m.g' => 'esa', 'Thhalv10029242m.g' => 'esa', 'TPR.G16654' => 'tpr', 'TPR.G20589' => 'tpr', 'TPR.G23029' => 'tpr', 'TPR.G27731' => 'tpr', 'TPR.G28889' => 'tpr', 'TPR.G28899' => 'tpr', 'TPR.G30846' => 'tpr', 'TPR.G5452' => 'tpr', 'TPR.G5713' => 'tpr', 'TPR.G9046' => 'tpr', 'TPR.G9061' => 'tpr', 'TWI09G1075' => 'twi', 'TWI12G0806' => 'twi', 'TWI18G0108' => 'twi', 'TWI53G1361' => 'twi', 'TWI73G0185' => 'twi', 'TWI73G0427' => 'twi', 'unitig_37.g12001' => 'ugi', 'unitig_747.g21660' => 'ugi', 'unitig_748.g7232' => 'ugi', 'unitig_748.g7315' => 'ugi', 'unitig_85.g27262' => 'ugi', 'unitig_92.g28220' => 'ugi', 'vmacro02632' => 'vma', 'vmacro08410' => 'vma', 'vmacro08411' => 'vma', 'vmacro15407' => 'vma', 'VMungo0251G3619' => 'vmu', 'VMungo0720G1204' => 'vmu', 'VMungo0720G1918' => 'vmu', 'VMungo0720G2387' => 'vmu', 'VMungo0720G2961' => 'vmu', 'VMungo1215G2154' => 'vmu', 'VMungo1383G2411' => 'vmu', 'Zm00001eb051130' => 'zma', 'Zm00001eb116830' => 'zma', 'Zm00001eb116850' => 'zma', 'Zm00001eb151740' => 'zma', 'Zm00001eb292360' => 'zma', 'Zm00001eb301640' => 'zma' ) $gf_id = 'HOM05D000856' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000856' ) $data_identifier = 'HOM05D000856' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 13, 'ath' => (int) 10, 'atr' => (int) 1, 'acertr' => (int) 8, 'cqu' => (int) 6, 'bca' => (int) 21, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 11, 'car' => (int) 9, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 8, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 5, 'fan' => (int) 16, 'fve' => (int) 6, 'gma' => (int) 11, 'ghi' => (int) 19, 'gra' => (int) 9, 'vvi' => (int) 7, 'han' => (int) 17, 'cav' => (int) 5, 'hma' => (int) 2, 'vpl' => (int) 2, 'sun' => (int) 7, 'lal' => (int) 9, 'lja' => (int) 5, 'lonja' => (int) 9, 'lsa' => (int) 5, 'mes' => (int) 8, 'mpo' => (int) 3, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 10, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 15, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 9, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 9, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 6, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 5, 'spa' => (int) 10, 'tar' => (int) 10, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 11, 'tpr' => (int) 11, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 4, 'vmu' => (int) 7, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb301640' $species_info = array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ) $local_species = 'cpa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000856', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p00010' => 'bna', 'A03p04160' => 'bna', 'A03p17160' => 'bna', 'A04p23370' => 'bna', 'A05p14860' => 'bna', 'A08p37020' => 'bna', 'A09p08050' => 'bna', 'A09p66800' => 'bna', 'A09p67940' => 'bna', 'A10p02680' => 'bna', 'A10p05320' => 'bna', 'Aa31LG1G20560' => 'aar', 'Aa31LG1G20610' => 'aar', 'Aa31LG1G7810' => 'aar', 'Aa31LG5G3590' => 'aar', 'Aa31LG5G6140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3819' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4683' => 'aag', 'Actinidia04480' => 'ach', 'Actinidia05466' => 'ach', 'Actinidia08445' => 'ach', 'Actinidia21170' => 'ach', 'Actinidia24812' => 'ach', 'Actinidia24951' => 'ach', 'Actinidia40088' => 'ach', 'Ah.02g111660' => 'amhyb', 'Ah.11g048900' => 'amhyb', 'Ah.11g049910' => 'amhyb', 'AL1G13870' => 'aly', 'AL1G13880' => 'aly', 'AL1G16760' => 'aly', 'AL390U10020' => 'aly', 'AL4G25520' => 'aly', 'AL6G19890' => 'aly', 'AL6G19900' => 'aly', 'AL6G19910' => 'aly', 'AL8G40100' => 'aly', 'Aqoxy2G03562' => 'aox', 'Aqoxy5G00316' => 'aox', 'Aqoxy5G00926' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1628KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1H403S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2FU6SJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.882I6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8YRY2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YN1SN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AF70II' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZA8L1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F916KL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHRD8H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KTZ8QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S22EMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8M29T' => 'arhy', 'AT1G04270' => 'ath', 'AT1G04280' => 'ath', 'AT1G06750' => 'ath', 'AT1G33850' => 'ath', 'AT2G30630' => 'ath', 'AT5G09490' => 'ath', 'AT5G09500' => 'ath', 'AT5G09510' => 'ath', 'AT5G43640' => 'ath', 'AT5G63070' => 'ath', 'ATR0605G315' => 'atr', 'Atru.chr11.175' => 'acertr', 'Atru.chr11.653' => 'acertr', 'Atru.chr3.1616' => 'acertr', 'Atru.chr4.2230' => 'acertr', 'Atru.chr4.2232' => 'acertr', 'Atru.chr5.1598' => 'acertr', 'Atru.chr5.1600' => 'acertr', 'Atru.chr5.2188' => 'acertr', 'AUR62008326' => 'cqu', 'AUR62011922' => 'cqu', 'AUR62011924' => 'cqu', 'AUR62021771' => 'cqu', 'AUR62032237' => 'cqu', 'AUR62032240' => 'cqu', 'BcaB01g05572' => 'bca', 'BcaB02g10337' => 'bca', 'BcaB04g19944' => 'bca', 'BcaB05g21548' => 'bca', 'BcaB05g21549' => 'bca', 'BcaB05g23227' => 'bca', 'BcaB06g26256' => 'bca', 'BcaB06g26257' => 'bca', 'BcaB06g28379' => 'bca', 'BcaC02g11159' => 'bca', 'BcaC03g13258' => 'bca', 'BcaC03g13259' => 'bca', 'BcaC05g24456' => 'bca', 'BcaC05g24457' => 'bca', 'BcaC07g36922' => 'bca', 'BcaC07g36923' => 'bca', 'BcaC07g42050' => 'bca', 'BcaC07g42176' => 'bca', 'BcaC07g42195' => 'bca', 'BcaC07g42196' => 'bca', 'BcaNung06674' => 'bca', 'BolC2t06351H' => 'bol', 'BolC2t06352H' => 'bol', 'BolC3t12993H' => 'bol', 'BolC4t23525H' => 'bol', 'BolC4t27475H' => 'bol', 'BolC5t29025H' => 'bol', 'BolC5t29026H' => 'bol', 'BolC8t46898H' => 'bol', 'BolC8t46899H' => 'bol', 'BolC8t52630H' => 'bol', 'BolC8t52765H' => 'bol', 'BolC9t53824H' => 'bol', 'BraA03t09760Z' => 'bra', 'BraA03t10990Z' => 'bra', 'BraA05t20413Z' => 'bra', 'BraA08t35602Z' => 'bra', 'BraA09t36458Z' => 'bra', 'BraA09t42018Z' => 'bra', 'BraA09t42129Z' => 'bra', 'BraA10t42536Z' => 'bra', 'BraA10t42537Z' => 'bra', 'C01p10690' => 'bna', 'C02p03890' => 'bna', 'C02p03900' => 'bna', 'C03p04620' => 'bna', 'C04p19870' => 'bna', 'C04p59670' => 'bna', 'C05p02460' => 'bna', 'C05p02470' => 'bna', 'C08p00980' => 'bna', 'C08p00990' => 'bna', 'C08p51030' => 'bna', 'C08p52360' => 'bna', 'C09p09120' => 'bna', 'CAN.G19.15' => 'can', 'CAN.G251.10' => 'can', 'CAN.G251.9' => 'can', 'CAN.G398.24' => 'can', 'CAN.G410.32' => 'can', 'CAN.G881.2' => 'can', 'CANSAT01G3025' => 'cansat', 'CANSAT78G1211' => 'cansat', 'CANSAT78G1218' => 'cansat', 'CANSAT78G1521' => 'cansat', 'CANSAT78G1670' => 'cansat', 'CARHR003600' => 'chi', 'CARHR003610' => 'chi', 'CARHR006290' => 'chi', 'CARHR006430' => 'chi', 'CARHR124110' => 'chi', 'CARHR203870' => 'chi', 'CARHR203880' => 'chi', 'CARHR203890' => 'chi', 'CARHR276880' => 'chi', 'Carub.0001s0346' => 'cru', 'Carub.0001s0347' => 'cru', 'Carub.0001s0607' => 'cru', 'Carub.0003s2768' => 'cru', 'Carub.0003s2769' => 'cru', 'Carub.0004s1178' => 'cru', 'Carub.0006s0806' => 'cru', 'Carub.0006s0807' => 'cru', 'Carub.0006s0808' => 'cru', 'Carub.0008s0501' => 'cru', 'Carub.0008s2379' => 'cru', 'Ca_08655_v3' => 'car', 'Ca_08922_v3' => 'car', 'Ca_08923_v3' => 'car', 'Ca_09119_v3' => 'car', 'Ca_09703_v3' => 'car', 'Ca_09705_v3' => 'car', 'Ca_09835_v3' => 'car', 'Ca_26403_v3' => 'car', 'Ca_30719_v3' => 'car', 'CBR_g17958' => 'cbr', 'CBR_g40516' => 'cbr', 'Cc00_g05350' => 'ccan', 'Cc01_g18690' => 'ccan', 'Cc03_g04830' => 'ccan', 'Cc03_g04850' => 'ccan', 'CDE02G4469' => 'cde', 'CDE06G0883' => 'cde', 'CDE06G1295' => 'cde', 'CDE06G1390' => 'cde', 'CDE07G0584' => 'cde', 'CDE07G1084' => 'cde', 'CDE08G1259' => 'cde', 'Cfa002341' => 'cfa', 'Cfa024337' => 'cfa', 'Ciclev10004749m.g' => 'ccl', 'Ciclev10006127m.g' => 'ccl', 'Ciclev10019720m.g' => 'ccl', 'Ciclev10022652m.g' => 'ccl', 'CiPaw.01G190400' => 'cil', 'CiPaw.01G190500' => 'cil', 'CiPaw.02G116400' => 'cil', 'CiPaw.02G116500' => 'cil', 'CiPaw.04G183000' => 'cil', 'CiPaw.04G183300' => 'cil', 'ClCG05G004610' => 'cla', 'ClCG05G004620' => 'cla', 'ClCG06G006730' => 'cla', 'ClCG06G006740' => 'cla', 'ClCG11G003690' => 'cla', 'COL.COLO4_08276' => 'col', 'COL.COLO4_08277' => 'col', 'COL.COLO4_15787' => 'col', 'COL.COLO4_15789' => 'col', 'Cpa.g.c44815' => 'cpa', 'Cpa.g.sc52.144' => 'cpa', 'Cpa.g.sc58.46' => 'cpa', 'Cpa.g.sc58.47' => 'cpa', 'Cre08.g360900' => 'cre', 'CsaV3_2G013030' => 'csa', 'CsaV3_2G013050' => 'csa', 'CsaV3_2G015620' => 'csa', 'CsaV3_3G012590' => 'csa', 'CsaV3_3G012600' => 'csa', 'CSS0001641' => 'camsi', 'CSS0008310' => 'camsi', 'CSS0013011' => 'camsi', 'CSS0017147' => 'camsi', 'CSS0022970' => 'camsi', 'CSS0025655' => 'camsi', 'CSS0028665' => 'camsi', 'CSS0029117' => 'camsi', 'CSS0032024' => 'camsi', 'CSS0039681' => 'camsi', 'CSS0046516' => 'camsi', 'CSS0050307' => 'camsi', 'DCAR_005871' => 'dca', 'DCAR_007342' => 'dca', 'DCAR_024228' => 'dca', 'DCAR_027277' => 'dca', 'DCAR_030718' => 'dca', 'Dinv20287' => 'din', 'Dinv22461' => 'din', 'Dinv22464' => 'din', 'Dinv29912' => 'din', 'Dinv29913' => 'din', 'Dinv34580' => 'din', 'Dinv34582' => 'din', 'Dinv44632' => 'din', 'Duzib052G0266' => 'dzi', 'Duzib133G0907' => 'dzi', 'Duzib133G1034' => 'dzi', 'Duzib138G0207' => 'dzi', 'Duzib138G0491' => 'dzi', 'Duzib151G0812' => 'dzi', 'Duzib151G1166' => 'dzi', 'Duzib168G0192' => 'dzi', 'Duzib211G0077' => 'dzi', 'Duzib212G0429' => 'dzi', 'Duzib212G0472' => 'dzi', 'ECA233G2617' => 'eca', 'ECA236G4188' => 'eca', 'ECA240G0936' => 'eca', 'ECA240G1129' => 'eca', 'ECA247G0623' => 'eca', 'EL10Ac5g10451' => 'bvu', 'EL10Ac5g10453' => 'bvu', 'EL10Ac5g10894' => 'bvu', 'Eucgr.H00192' => 'egr', 'Eucgr.H00193' => 'egr', 'Eucgr.H00194' => 'egr', 'Eucgr.J01562' => 'egr', 'Eucgr.K03301' => 'egr', 'FAN02G0632' => 'fan', 'FAN05G5378' => 'fan', 'FAN09G3247' => 'fan', 'FAN12G0435' => 'fan', 'FAN12G2426' => 'fan', 'FAN14G1707' => 'fan', 'FAN14G4725' => 'fan', 'FAN15G2071' => 'fan', 'FAN17G3065' => 'fan', 'FAN19G1376' => 'fan', 'FAN20G0354' => 'fan', 'FAN20G2429' => 'fan', 'FAN20G2658' => 'fan', 'FAN24G2343' => 'fan', 'FAN27G2362' => 'fan', 'FAN28G1765' => 'fan', 'FvH4_1g16020' => 'fve', 'FvH4_2g04890' => 'fve', 'FvH4_2g22270' => 'fve', 'FvH4_4g02630' => 'fve', 'FvH4_4g02640' => 'fve', 'FvH4_6g02650' => 'fve', 'Glyma.02G140600' => 'gma', 'Glyma.03G159900' => 'gma', 'Glyma.05G234800' => 'gma', 'Glyma.07G269600' => 'gma', 'Glyma.08G042300' => 'gma', 'Glyma.10G033500' => 'gma', 'Glyma.10G185200' => 'gma', 'Glyma.17G004300' => 'gma', 'Glyma.19G161900' => 'gma', 'Glyma.20G205100' => 'gma', 'Glyma.20G205200' => 'gma', 'Gohir.A01G139101' => 'ghi', 'Gohir.A02G035600' => 'ghi', 'Gohir.A02G117901' => 'ghi', 'Gohir.A07G210100' => 'ghi', 'Gohir.A07G210200' => 'ghi', 'Gohir.A08G061100' => 'ghi', 'Gohir.A09G223000' => 'ghi', 'Gohir.A09G223100' => 'ghi', 'Gohir.A10G113900' => 'ghi', 'Gohir.A10G114000' => 'ghi', 'Gohir.D02G042300' => 'ghi', 'Gohir.D07G216100' => 'ghi', 'Gohir.D07G216200' => 'ghi', 'Gohir.D08G070400' => 'ghi', 'Gohir.D09G225000' => 'ghi', 'Gohir.D09G225100' => 'ghi', 'Gohir.D10G152300' => 'ghi', 'Gohir.D10G153200' => 'ghi', 'Gohir.D11G133701' => 'ghi', 'Gorai.004G074100' => 'gra', 'Gorai.005G046800' => 'gra', 'Gorai.006G246500' => 'gra', 'Gorai.006G246600' => 'gra', 'Gorai.007G142900' => 'gra', 'Gorai.011G171000' => 'gra', 'Gorai.011G171100' => 'gra', 'Gorai.013G104300' => 'gra', 'Gorai.013G104400' => 'gra', 'GSVIVG01000754001' => 'vvi', 'GSVIVG01000756001' => 'vvi', 'GSVIVG01010903001' => 'vvi', 'GSVIVG01017623001' => 'vvi', 'GSVIVG01018113001' => 'vvi', 'GSVIVG01018116001' => 'vvi', 'GSVIVG01018118001' => 'vvi', 'HanXRQChr03g0076211' => 'han', 'HanXRQChr03g0092431' => 'han', 'HanXRQChr03g0092441' => 'han', 'HanXRQChr03g0092591' => 'han', 'HanXRQChr03g0092671' => 'han', 'HanXRQChr03g0092681' => 'han', 'HanXRQChr03g0092691' => 'han', 'HanXRQChr03g0092701' => 'han', 'HanXRQChr03g0092721' => 'han', 'HanXRQChr03g0092731' => 'han', 'HanXRQChr04g0113681' => 'han', 'HanXRQChr10g0281371' => 'han', 'HanXRQChr11g0337141' => 'han', 'HanXRQChr13g0424521' => 'han', 'HanXRQChr13g0424531' => 'han', 'HanXRQChr13g0424541' => 'han', 'HanXRQChr16g0498221' => 'han', 'Haze_04377' => 'cav', 'Haze_11298' => 'cav', 'Haze_24547' => 'cav', 'Haze_24550' => 'cav', 'Haze_26587' => 'cav', 'Hma1.2p1_0650F.1_g195410' => 'hma', 'Hma1.2p1_0893F.1_g233470' => 'hma', 'HPP92_006508' => 'vpl', 'HPP92_024780' => 'vpl', 'Hund02688' => 'sun', 'Hund09380' => 'sun', 'Hund09381' => 'sun', 'Hund09832' => 'sun', 'Hund09833' => 'sun', 'Hund11351' => 'sun', 'Hund11513' => 'sun', 'Lalb_Chr06g0162591' => 'lal', 'Lalb_Chr06g0162601' => 'lal', 'Lalb_Chr06g0169321' => 'lal', 'Lalb_Chr09g0330951' => 'lal', 'Lalb_Chr16g0387631' => 'lal', 'Lalb_Chr21g0306241' => 'lal', 'Lalb_Chr25g0290051' => 'lal', 'Lalb_Chr25g0290061' => 'lal', 'Lalb_Chr25g0290071' => 'lal', 'Lj1g0003876' => 'lja', 'Lj1P1207T36' => 'lonja', 'Lj2C1156G12' => 'lonja', 'Lj3A793G39' => 'lonja', 'Lj3C580G2' => 'lonja', 'Lj3C780G2' => 'lonja', 'Lj3C780T4' => 'lonja', 'Lj3C793G9' => 'lonja', 'Lj4g0012960' => 'lja', 'Lj5g0021252' => 'lja', 'Lj5g0021484' => 'lja', 'Lj5g0024528' => 'lja', 'Lj6A399T12' => 'lonja', 'Lj6A656G65' => 'lonja', 'Lsat_1_v5_gn_3_125500' => 'lsa', 'Lsat_1_v5_gn_3_125540' => 'lsa', 'Lsat_1_v5_gn_5_72701' => 'lsa', 'Lsat_1_v5_gn_8_91560' => 'lsa', 'Lsat_1_v5_gn_9_9640' => 'lsa', 'Manes.01G200600' => 'mes', 'Manes.01G200700' => 'mes', 'Manes.03G168900' => 'mes', 'Manes.03G169000' => 'mes', 'Manes.05G085801' => 'mes', 'Manes.05G086200' => 'mes', 'Manes.15G036700' => 'mes', 'Manes.15G036900' => 'mes', 'Mapoly0004s0172' => 'mpo', 'Mapoly0023s0001' => 'mpo', 'Mapoly0142s0012' => 'mpo', 'MBI01_g32854_MAGBIO' => 'mbi', 'MBI11_g24427_MAGBIO' => 'mbi', 'MBI11_g47319_MAGBIO' => 'mbi', 'MCO01G433' => 'mco', 'MD00G1187800' => 'mdo', 'MD04G1226500' => 'mdo', 'MD05G1203900' => 'mdo', 'MD10G1191100' => 'mdo', 'MD12G1243500' => 'mdo', 'MD13G1207000' => 'mdo', 'MD13G1207100' => 'mdo', 'MD16G1208600' => 'mdo', 'Medtr1g050352' => 'mtr', 'Medtr1g070385' => 'mtr', 'Medtr1g070450' => 'mtr', 'Medtr1g075200' => 'mtr', 'Medtr1g075250' => 'mtr', 'Medtr1g075260' => 'mtr', 'Medtr1g475250' => 'mtr', 'Medtr4g075450' => 'mtr', 'Medtr7g096300' => 'mtr', 'Medtr8g105110' => 'mtr', 'MELO3C006470.2' => 'cme', 'MELO3C006471.2' => 'cme', 'MELO3C020772.2' => 'cme', 'MELO3C026780.2' => 'cme', 'MELO3C026781.2' => 'cme', 'Migut.D00390' => 'egut', 'Migut.G00435' => 'egut', 'Migut.G00436' => 'egut', 'Migut.G00718' => 'egut', 'MSTRG.21891' => 'ama', 'MSTRG.26910' => 'ama', 'MSTRG.4099' => 'ama', 'MSTRG.9925' => 'ama', 'Nitab4.5_0000165g0010' => 'nta', 'Nitab4.5_0000209g0180' => 'nta', 'Nitab4.5_0000244g0440' => 'nta', 'Nitab4.5_0000525g0220' => 'nta', 'Nitab4.5_0001597g0020' => 'nta', 'Nitab4.5_0001878g0040' => 'nta', 'Nitab4.5_0001878g0060' => 'nta', 'Nitab4.5_0002838g0100' => 'nta', 'Nitab4.5_0002838g0120' => 'nta', 'Nitab4.5_0004798g0030' => 'nta', 'Nitab4.5_0005420g0010' => 'nta', 'Nitab4.5_0005507g0010' => 'nta', 'Nitab4.5_0005574g0020' => 'nta', 'Nitab4.5_0005838g0010' => 'nta', 'Nitab4.5_0010580g0020' => 'nta', 'Nn1g02599' => 'nnu', 'Nn1g02608' => 'nnu', 'Nn3g17742' => 'nnu', 'Nn3g19534' => 'nnu', 'Nn3g19535' => 'nnu', 'Oeu008790.1' => 'oeu', 'Oeu008792.1' => 'oeu', 'Oeu032590.1' => 'oeu', 'Oeu035349.1' => 'oeu', 'Oeu049791.1' => 'oeu', 'Os01g0774500' => 'osa', 'Os03g0628800' => 'osa', 'Os03g0798600' => 'osa', 'Os05g0508800' => 'osa', 'Peaxi162Scf00036g02018' => 'pax', 'Peaxi162Scf00578g00032' => 'pax', 'Peaxi162Scf00578g00317' => 'pax', 'Peaxi162Scf00785g00114' => 'pax', 'Peaxi162Scf00813g00119' => 'pax', 'Peaxi162Scf00906g00227' => 'pax', 'PGR004G0875' => 'pgr', 'PGR004G2424' => 'pgr', 'PGR031G1239' => 'pgr', 'PGR031G2474' => 'pgr', 'PGR044G0423' => 'pgr', 'PGSC0003DMG400001128' => 'stu', 'PGSC0003DMG400007336' => 'stu', 'PGSC0003DMG400016318' => 'stu', 'PGSC0003DMG400016319' => 'stu', 'PGSC0003DMG400018074' => 'stu', 'Phvul.001G157700' => 'pvu', 'Phvul.002G148550' => 'pvu', 'Phvul.002G320200' => 'pvu', 'Phvul.003G089200' => 'pvu', 'Phvul.007G126000' => 'pvu', 'Phvul.007G126100' => 'pvu', 'Phvul.007G178000' => 'pvu', 'Phvul.007G178200' => 'pvu', 'Potri.002G043000' => 'ptr', 'Potri.002G043200' => 'ptr', 'Potri.003G123750' => 'ptr', 'Potri.005G055401' => 'ptr', 'Potri.005G219700' => 'ptr', 'Potri.005G220000' => 'ptr', 'Potri.008G161901' => 'ptr', 'Potri.008G162000' => 'ptr', 'Potri.008G162400' => 'ptr', 'Potri.010G076900' => 'ptr', 'Pp3c12_9180' => 'ppa', 'Pp3c13_19770' => 'ppa', 'Pp3c14_22950' => 'ppa', 'Pp3c16_12160' => 'ppa', 'Pp3c27_7820' => 'ppa', 'Pp3c2_3490' => 'ppa', 'Pp3c3_23700' => 'ppa', 'Pp3c3_36520' => 'ppa', 'Pp3c4_15250' => 'ppa', 'PRCOL_00007002' => 'pco', 'Prupe.1G030600' => 'ppe', 'Prupe.1G030700' => 'ppe', 'Prupe.6G345200' => 'ppe', 'Prupe.8G230300' => 'ppe', 'Prupe.8G230500' => 'ppe', 'Psat3g059600' => 'psa', 'Psat5g200920' => 'psa', 'Psat6g056440' => 'psa', 'Psat6g057360' => 'psa', 'Psat6g134120' => 'psa', 'Psat6g134160' => 'psa', 'Psat7g008640' => 'psa', 'Psat7g185240' => 'psa', 'PSO017G1330' => 'pso', 'PSO063G6097' => 'pso', 'PSO170G0835' => 'pso', 'PSO170G2499' => 'pso', 'PSO210G5058' => 'pso', 'PSO210G6154' => 'pso', 'PSO585G0031' => 'pso', 'PSO832G0264' => 'pso', 'PSO832G4288' => 'pso', 'QL03p027355' => 'qlo', 'QL03p027430' => 'qlo', 'QL04p081380' => 'qlo', 'QL06p015642' => 'qlo', 'QL06p015650' => 'qlo', 'QL06p015686' => 'qlo', 'QL12p042927' => 'qlo', 'QL93p1863_0035' => 'qlo', 'RcHm_v2.0_Chr3g0450581' => 'rch', 'RcHm_v2.0_Chr4g0390371' => 'rch', 'RcHm_v2.0_Chr4g0390381' => 'rch', 'RcHm_v2.0_Chr4g0390491' => 'rch', 'RcHm_v2.0_Chr4g0390501' => 'rch', 'RcHm_v2.0_Chr6g0289231' => 'rch', 'Rhsim04G0190400' => 'rsi', 'Rhsim04G0190500' => 'rsi', 'Rhsim04G0190600' => 'rsi', 'Rhsim13G0031400' => 'rsi', 'Rhsim13G0165600' => 'rsi', 'RhsimUnG0114600' => 'rsi', 'RhsimUnG0114700' => 'rsi', 'Sabra02G0034800' => 'sbr', 'Sabra02G0035100' => 'sbr', 'Sabra05G0168600' => 'sbr', 'Sabra05G0168800' => 'sbr', 'Sabra08G0123700' => 'sbr', 'Sabra10G0031900' => 'sbr', 'Sabra13G0039000' => 'sbr', 'SalBow2G0782' => 'sbo', 'SalBow2G1403' => 'sbo', 'SalBow4G0074' => 'sbo', 'SalBow4G2635' => 'sbo', 'SalBow5G3010' => 'sbo', 'Sc05g0000870' => 'sci', 'Sc05g0000890' => 'sci', 'Sc13g0005000' => 'sci', 'Sc13g0005030' => 'sci', 'Sc19g0003790' => 'sci', 'Sc19g0003800' => 'sci', 'Sed0003467' => 'sed', 'Sed0009355' => 'sed', 'Sed0009894' => 'sed', 'Sed0011972' => 'sed', 'Sed0021483' => 'sed', 'Sed0021750' => 'sed', 'Sed0026279' => 'sed', 'SEGI_05312' => 'sgi', 'SEGI_10112' => 'sgi', 'SEGI_15835' => 'sgi', 'SEGI_30386' => 'sgi', 'SEGI_34122' => 'sgi', 'SEGI_35063' => 'sgi', 'SGA_v2.0_scaffold101G29794' => 'sas', 'SGA_v2.0_scaffold1G00573' => 'sas', 'SGA_v2.0_scaffold79G25637' => 'sas', 'SGA_v2.0_scaffold88G27283' => 'sas', 'SGA_v2.0_scaffold88G27285' => 'sas', 'SGA_v2.0_scaffold88G27331' => 'sas', 'SHI09937' => 'shi', 'SMO119G0302' => 'smo', 'SMO137G0231' => 'smo', 'SMO367G1151' => 'smo', 'Solyc02g082000.3' => 'sly', 'Solyc06g031670.3' => 'sly', 'Solyc06g053810.3' => 'sly', 'Solyc07g025457.1' => 'sly', 'Solyc08g059740.1' => 'sly', 'Solyc08g059750.3' => 'sly', 'Solyc09g083370.3' => 'sly', 'Solyc12g038950.3' => 'sly', 'Sopen02g026630' => 'spe', 'Sopen06g018930' => 'spe', 'Sopen06g018940' => 'spe', 'Sopen08g009460' => 'spe', 'Sopen09g032290' => 'spe', 'Sp1g03080' => 'spa', 'Sp1g03090' => 'spa', 'Sp1g05480' => 'spa', 'Sp2g07860' => 'spa', 'Sp2g08430' => 'spa', 'Sp2g08440' => 'spa', 'Sp2g26200' => 'spa', 'Sp4g13170' => 'spa', 'Sp6g33840' => 'spa', 'SpUn1204_0010' => 'spa', 'TAR365G0908' => 'tar', 'TAR381G1270' => 'tar', 'TAR381G1651' => 'tar', 'TAR625G1131' => 'tar', 'TAR633G0962' => 'tar', 'TAR633G1729' => 'tar', 'TAR633G1864' => 'tar', 'TAR636G0221' => 'tar', 'TAR636G0314' => 'tar', 'TAR636G3202' => 'tar', 'THA.LOC104800805' => 'tha', 'THA.LOC104801096' => 'tha', 'THA.LOC104801555' => 'tha', 'THA.LOC104808491' => 'tha', 'THA.LOC104808595' => 'tha', 'THA.LOC104815985' => 'tha', 'THA.LOC104822250' => 'tha', 'THA.LOC104826071' => 'tha', 'Thecc.01G265200' => 'tca', 'Thecc.01G265300' => 'tca', 'Thecc.01G265700' => 'tca', 'Thecc.03G109100' => 'tca', 'Thecc.04G245900' => 'tca', 'Thecc.04G246000' => 'tca', 'Thhalv10003334m.g' => 'esa', 'Thhalv10005508m.g' => 'esa', 'Thhalv10005643m.g' => 'esa', 'Thhalv10007316m.g' => 'esa', 'Thhalv10009006m.g' => 'esa', 'Thhalv10009309m.g' => 'esa', 'Thhalv10014917m.g' => 'esa', 'Thhalv10014919m.g' => 'esa', 'Thhalv10015393m.g' => 'esa', 'Thhalv10016515m.g' => 'esa', 'Thhalv10029242m.g' => 'esa', 'TPR.G16654' => 'tpr', 'TPR.G20589' => 'tpr', 'TPR.G23029' => 'tpr', 'TPR.G27731' => 'tpr', 'TPR.G28889' => 'tpr', 'TPR.G28899' => 'tpr', 'TPR.G30846' => 'tpr', 'TPR.G5452' => 'tpr', 'TPR.G5713' => 'tpr', 'TPR.G9046' => 'tpr', 'TPR.G9061' => 'tpr', 'TWI09G1075' => 'twi', 'TWI12G0806' => 'twi', 'TWI18G0108' => 'twi', 'TWI53G1361' => 'twi', 'TWI73G0185' => 'twi', 'TWI73G0427' => 'twi', 'unitig_37.g12001' => 'ugi', 'unitig_747.g21660' => 'ugi', 'unitig_748.g7232' => 'ugi', 'unitig_748.g7315' => 'ugi', 'unitig_85.g27262' => 'ugi', 'unitig_92.g28220' => 'ugi', 'vmacro02632' => 'vma', 'vmacro08410' => 'vma', 'vmacro08411' => 'vma', 'vmacro15407' => 'vma', 'VMungo0251G3619' => 'vmu', 'VMungo0720G1204' => 'vmu', 'VMungo0720G1918' => 'vmu', 'VMungo0720G2387' => 'vmu', 'VMungo0720G2961' => 'vmu', 'VMungo1215G2154' => 'vmu', 'VMungo1383G2411' => 'vmu', 'Zm00001eb051130' => 'zma', 'Zm00001eb116830' => 'zma', 'Zm00001eb116850' => 'zma', 'Zm00001eb151740' => 'zma', 'Zm00001eb292360' => 'zma', 'Zm00001eb301640' => 'zma' ), 'gf_id' => 'HOM05D000856', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000856' ), 'data_identifier' => 'HOM05D000856', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000856', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p00010' => 'bna', 'A03p04160' => 'bna', 'A03p17160' => 'bna', 'A04p23370' => 'bna', 'A05p14860' => 'bna', 'A08p37020' => 'bna', 'A09p08050' => 'bna', 'A09p66800' => 'bna', 'A09p67940' => 'bna', 'A10p02680' => 'bna', 'A10p05320' => 'bna', 'Aa31LG1G20560' => 'aar', 'Aa31LG1G20610' => 'aar', 'Aa31LG1G7810' => 'aar', 'Aa31LG5G3590' => 'aar', 'Aa31LG5G6140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3819' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4683' => 'aag', 'Actinidia04480' => 'ach', 'Actinidia05466' => 'ach', 'Actinidia08445' => 'ach', 'Actinidia21170' => 'ach', 'Actinidia24812' => 'ach', 'Actinidia24951' => 'ach', 'Actinidia40088' => 'ach', 'Ah.02g111660' => 'amhyb', 'Ah.11g048900' => 'amhyb', 'Ah.11g049910' => 'amhyb', 'AL1G13870' => 'aly', 'AL1G13880' => 'aly', 'AL1G16760' => 'aly', 'AL390U10020' => 'aly', 'AL4G25520' => 'aly', 'AL6G19890' => 'aly', 'AL6G19900' => 'aly', 'AL6G19910' => 'aly', 'AL8G40100' => 'aly', 'Aqoxy2G03562' => 'aox', 'Aqoxy5G00316' => 'aox', 'Aqoxy5G00926' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1628KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1H403S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2FU6SJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.882I6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8YRY2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YN1SN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AF70II' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZA8L1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F916KL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHRD8H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KTZ8QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S22EMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8M29T' => 'arhy', 'AT1G04270' => 'ath', 'AT1G04280' => 'ath', 'AT1G06750' => 'ath', 'AT1G33850' => 'ath', 'AT2G30630' => 'ath', 'AT5G09490' => 'ath', 'AT5G09500' => 'ath', 'AT5G09510' => 'ath', 'AT5G43640' => 'ath', 'AT5G63070' => 'ath', 'ATR0605G315' => 'atr', 'Atru.chr11.175' => 'acertr', 'Atru.chr11.653' => 'acertr', 'Atru.chr3.1616' => 'acertr', 'Atru.chr4.2230' => 'acertr', 'Atru.chr4.2232' => 'acertr', 'Atru.chr5.1598' => 'acertr', 'Atru.chr5.1600' => 'acertr', 'Atru.chr5.2188' => 'acertr', 'AUR62008326' => 'cqu', 'AUR62011922' => 'cqu', 'AUR62011924' => 'cqu', 'AUR62021771' => 'cqu', 'AUR62032237' => 'cqu', 'AUR62032240' => 'cqu', 'BcaB01g05572' => 'bca', 'BcaB02g10337' => 'bca', 'BcaB04g19944' => 'bca', 'BcaB05g21548' => 'bca', 'BcaB05g21549' => 'bca', 'BcaB05g23227' => 'bca', 'BcaB06g26256' => 'bca', 'BcaB06g26257' => 'bca', 'BcaB06g28379' => 'bca', 'BcaC02g11159' => 'bca', 'BcaC03g13258' => 'bca', 'BcaC03g13259' => 'bca', 'BcaC05g24456' => 'bca', 'BcaC05g24457' => 'bca', 'BcaC07g36922' => 'bca', 'BcaC07g36923' => 'bca', 'BcaC07g42050' => 'bca', 'BcaC07g42176' => 'bca', 'BcaC07g42195' => 'bca', 'BcaC07g42196' => 'bca', 'BcaNung06674' => 'bca', 'BolC2t06351H' => 'bol', 'BolC2t06352H' => 'bol', 'BolC3t12993H' => 'bol', 'BolC4t23525H' => 'bol', 'BolC4t27475H' => 'bol', 'BolC5t29025H' => 'bol', 'BolC5t29026H' => 'bol', 'BolC8t46898H' => 'bol', 'BolC8t46899H' => 'bol', 'BolC8t52630H' => 'bol', 'BolC8t52765H' => 'bol', 'BolC9t53824H' => 'bol', 'BraA03t09760Z' => 'bra', 'BraA03t10990Z' => 'bra', 'BraA05t20413Z' => 'bra', 'BraA08t35602Z' => 'bra', 'BraA09t36458Z' => 'bra', 'BraA09t42018Z' => 'bra', 'BraA09t42129Z' => 'bra', 'BraA10t42536Z' => 'bra', 'BraA10t42537Z' => 'bra', 'C01p10690' => 'bna', 'C02p03890' => 'bna', 'C02p03900' => 'bna', 'C03p04620' => 'bna', 'C04p19870' => 'bna', 'C04p59670' => 'bna', 'C05p02460' => 'bna', 'C05p02470' => 'bna', 'C08p00980' => 'bna', 'C08p00990' => 'bna', 'C08p51030' => 'bna', 'C08p52360' => 'bna', 'C09p09120' => 'bna', 'CAN.G19.15' => 'can', 'CAN.G251.10' => 'can', 'CAN.G251.9' => 'can', 'CAN.G398.24' => 'can', 'CAN.G410.32' => 'can', 'CAN.G881.2' => 'can', 'CANSAT01G3025' => 'cansat', 'CANSAT78G1211' => 'cansat', 'CANSAT78G1218' => 'cansat', 'CANSAT78G1521' => 'cansat', 'CANSAT78G1670' => 'cansat', 'CARHR003600' => 'chi', 'CARHR003610' => 'chi', 'CARHR006290' => 'chi', 'CARHR006430' => 'chi', 'CARHR124110' => 'chi', 'CARHR203870' => 'chi', 'CARHR203880' => 'chi', 'CARHR203890' => 'chi', 'CARHR276880' => 'chi', 'Carub.0001s0346' => 'cru', 'Carub.0001s0347' => 'cru', 'Carub.0001s0607' => 'cru', 'Carub.0003s2768' => 'cru', 'Carub.0003s2769' => 'cru', 'Carub.0004s1178' => 'cru', 'Carub.0006s0806' => 'cru', 'Carub.0006s0807' => 'cru', 'Carub.0006s0808' => 'cru', 'Carub.0008s0501' => 'cru', 'Carub.0008s2379' => 'cru', 'Ca_08655_v3' => 'car', 'Ca_08922_v3' => 'car', 'Ca_08923_v3' => 'car', 'Ca_09119_v3' => 'car', 'Ca_09703_v3' => 'car', 'Ca_09705_v3' => 'car', 'Ca_09835_v3' => 'car', 'Ca_26403_v3' => 'car', 'Ca_30719_v3' => 'car', 'CBR_g17958' => 'cbr', 'CBR_g40516' => 'cbr', 'Cc00_g05350' => 'ccan', 'Cc01_g18690' => 'ccan', 'Cc03_g04830' => 'ccan', 'Cc03_g04850' => 'ccan', 'CDE02G4469' => 'cde', 'CDE06G0883' => 'cde', 'CDE06G1295' => 'cde', 'CDE06G1390' => 'cde', 'CDE07G0584' => 'cde', 'CDE07G1084' => 'cde', 'CDE08G1259' => 'cde', 'Cfa002341' => 'cfa', 'Cfa024337' => 'cfa', 'Ciclev10004749m.g' => 'ccl', 'Ciclev10006127m.g' => 'ccl', 'Ciclev10019720m.g' => 'ccl', 'Ciclev10022652m.g' => 'ccl', 'CiPaw.01G190400' => 'cil', 'CiPaw.01G190500' => 'cil', 'CiPaw.02G116400' => 'cil', 'CiPaw.02G116500' => 'cil', 'CiPaw.04G183000' => 'cil', 'CiPaw.04G183300' => 'cil', 'ClCG05G004610' => 'cla', 'ClCG05G004620' => 'cla', 'ClCG06G006730' => 'cla', 'ClCG06G006740' => 'cla', 'ClCG11G003690' => 'cla', 'COL.COLO4_08276' => 'col', 'COL.COLO4_08277' => 'col', 'COL.COLO4_15787' => 'col', 'COL.COLO4_15789' => 'col', 'Cpa.g.c44815' => 'cpa', 'Cpa.g.sc52.144' => 'cpa', 'Cpa.g.sc58.46' => 'cpa', 'Cpa.g.sc58.47' => 'cpa', 'Cre08.g360900' => 'cre', 'CsaV3_2G013030' => 'csa', 'CsaV3_2G013050' => 'csa', 'CsaV3_2G015620' => 'csa', 'CsaV3_3G012590' => 'csa', 'CsaV3_3G012600' => 'csa', 'CSS0001641' => 'camsi', 'CSS0008310' => 'camsi', 'CSS0013011' => 'camsi', 'CSS0017147' => 'camsi', 'CSS0022970' => 'camsi', 'CSS0025655' => 'camsi', 'CSS0028665' => 'camsi', 'CSS0029117' => 'camsi', 'CSS0032024' => 'camsi', 'CSS0039681' => 'camsi', 'CSS0046516' => 'camsi', 'CSS0050307' => 'camsi', 'DCAR_005871' => 'dca', 'DCAR_007342' => 'dca', 'DCAR_024228' => 'dca', 'DCAR_027277' => 'dca', 'DCAR_030718' => 'dca', 'Dinv20287' => 'din', 'Dinv22461' => 'din', 'Dinv22464' => 'din', 'Dinv29912' => 'din', 'Dinv29913' => 'din', 'Dinv34580' => 'din', 'Dinv34582' => 'din', 'Dinv44632' => 'din', 'Duzib052G0266' => 'dzi', 'Duzib133G0907' => 'dzi', 'Duzib133G1034' => 'dzi', 'Duzib138G0207' => 'dzi', 'Duzib138G0491' => 'dzi', 'Duzib151G0812' => 'dzi', 'Duzib151G1166' => 'dzi', 'Duzib168G0192' => 'dzi', 'Duzib211G0077' => 'dzi', 'Duzib212G0429' => 'dzi', 'Duzib212G0472' => 'dzi', 'ECA233G2617' => 'eca', 'ECA236G4188' => 'eca', 'ECA240G0936' => 'eca', 'ECA240G1129' => 'eca', 'ECA247G0623' => 'eca', 'EL10Ac5g10451' => 'bvu', 'EL10Ac5g10453' => 'bvu', 'EL10Ac5g10894' => 'bvu', 'Eucgr.H00192' => 'egr', 'Eucgr.H00193' => 'egr', 'Eucgr.H00194' => 'egr', 'Eucgr.J01562' => 'egr', 'Eucgr.K03301' => 'egr', 'FAN02G0632' => 'fan', 'FAN05G5378' => 'fan', 'FAN09G3247' => 'fan', 'FAN12G0435' => 'fan', 'FAN12G2426' => 'fan', 'FAN14G1707' => 'fan', 'FAN14G4725' => 'fan', 'FAN15G2071' => 'fan', 'FAN17G3065' => 'fan', 'FAN19G1376' => 'fan', 'FAN20G0354' => 'fan', 'FAN20G2429' => 'fan', 'FAN20G2658' => 'fan', 'FAN24G2343' => 'fan', 'FAN27G2362' => 'fan', 'FAN28G1765' => 'fan', 'FvH4_1g16020' => 'fve', 'FvH4_2g04890' => 'fve', 'FvH4_2g22270' => 'fve', 'FvH4_4g02630' => 'fve', 'FvH4_4g02640' => 'fve', 'FvH4_6g02650' => 'fve', 'Glyma.02G140600' => 'gma', 'Glyma.03G159900' => 'gma', 'Glyma.05G234800' => 'gma', 'Glyma.07G269600' => 'gma', 'Glyma.08G042300' => 'gma', 'Glyma.10G033500' => 'gma', 'Glyma.10G185200' => 'gma', 'Glyma.17G004300' => 'gma', 'Glyma.19G161900' => 'gma', 'Glyma.20G205100' => 'gma', 'Glyma.20G205200' => 'gma', 'Gohir.A01G139101' => 'ghi', 'Gohir.A02G035600' => 'ghi', 'Gohir.A02G117901' => 'ghi', 'Gohir.A07G210100' => 'ghi', 'Gohir.A07G210200' => 'ghi', 'Gohir.A08G061100' => 'ghi', 'Gohir.A09G223000' => 'ghi', 'Gohir.A09G223100' => 'ghi', 'Gohir.A10G113900' => 'ghi', 'Gohir.A10G114000' => 'ghi', 'Gohir.D02G042300' => 'ghi', 'Gohir.D07G216100' => 'ghi', 'Gohir.D07G216200' => 'ghi', 'Gohir.D08G070400' => 'ghi', 'Gohir.D09G225000' => 'ghi', 'Gohir.D09G225100' => 'ghi', 'Gohir.D10G152300' => 'ghi', 'Gohir.D10G153200' => 'ghi', 'Gohir.D11G133701' => 'ghi', 'Gorai.004G074100' => 'gra', 'Gorai.005G046800' => 'gra', 'Gorai.006G246500' => 'gra', 'Gorai.006G246600' => 'gra', 'Gorai.007G142900' => 'gra', 'Gorai.011G171000' => 'gra', 'Gorai.011G171100' => 'gra', 'Gorai.013G104300' => 'gra', 'Gorai.013G104400' => 'gra', 'GSVIVG01000754001' => 'vvi', 'GSVIVG01000756001' => 'vvi', 'GSVIVG01010903001' => 'vvi', 'GSVIVG01017623001' => 'vvi', 'GSVIVG01018113001' => 'vvi', 'GSVIVG01018116001' => 'vvi', 'GSVIVG01018118001' => 'vvi', 'HanXRQChr03g0076211' => 'han', 'HanXRQChr03g0092431' => 'han', 'HanXRQChr03g0092441' => 'han', 'HanXRQChr03g0092591' => 'han', 'HanXRQChr03g0092671' => 'han', 'HanXRQChr03g0092681' => 'han', 'HanXRQChr03g0092691' => 'han', 'HanXRQChr03g0092701' => 'han', 'HanXRQChr03g0092721' => 'han', 'HanXRQChr03g0092731' => 'han', 'HanXRQChr04g0113681' => 'han', 'HanXRQChr10g0281371' => 'han', 'HanXRQChr11g0337141' => 'han', 'HanXRQChr13g0424521' => 'han', 'HanXRQChr13g0424531' => 'han', 'HanXRQChr13g0424541' => 'han', 'HanXRQChr16g0498221' => 'han', 'Haze_04377' => 'cav', 'Haze_11298' => 'cav', 'Haze_24547' => 'cav', 'Haze_24550' => 'cav', 'Haze_26587' => 'cav', 'Hma1.2p1_0650F.1_g195410' => 'hma', 'Hma1.2p1_0893F.1_g233470' => 'hma', 'HPP92_006508' => 'vpl', 'HPP92_024780' => 'vpl', 'Hund02688' => 'sun', 'Hund09380' => 'sun', 'Hund09381' => 'sun', 'Hund09832' => 'sun', 'Hund09833' => 'sun', 'Hund11351' => 'sun', 'Hund11513' => 'sun', 'Lalb_Chr06g0162591' => 'lal', 'Lalb_Chr06g0162601' => 'lal', 'Lalb_Chr06g0169321' => 'lal', 'Lalb_Chr09g0330951' => 'lal', 'Lalb_Chr16g0387631' => 'lal', 'Lalb_Chr21g0306241' => 'lal', 'Lalb_Chr25g0290051' => 'lal', 'Lalb_Chr25g0290061' => 'lal', 'Lalb_Chr25g0290071' => 'lal', 'Lj1g0003876' => 'lja', 'Lj1P1207T36' => 'lonja', 'Lj2C1156G12' => 'lonja', 'Lj3A793G39' => 'lonja', 'Lj3C580G2' => 'lonja', 'Lj3C780G2' => 'lonja', 'Lj3C780T4' => 'lonja', 'Lj3C793G9' => 'lonja', 'Lj4g0012960' => 'lja', 'Lj5g0021252' => 'lja', 'Lj5g0021484' => 'lja', 'Lj5g0024528' => 'lja', 'Lj6A399T12' => 'lonja', 'Lj6A656G65' => 'lonja', 'Lsat_1_v5_gn_3_125500' => 'lsa', 'Lsat_1_v5_gn_3_125540' => 'lsa', 'Lsat_1_v5_gn_5_72701' => 'lsa', 'Lsat_1_v5_gn_8_91560' => 'lsa', 'Lsat_1_v5_gn_9_9640' => 'lsa', 'Manes.01G200600' => 'mes', 'Manes.01G200700' => 'mes', 'Manes.03G168900' => 'mes', 'Manes.03G169000' => 'mes', 'Manes.05G085801' => 'mes', 'Manes.05G086200' => 'mes', 'Manes.15G036700' => 'mes', 'Manes.15G036900' => 'mes', 'Mapoly0004s0172' => 'mpo', 'Mapoly0023s0001' => 'mpo', 'Mapoly0142s0012' => 'mpo', 'MBI01_g32854_MAGBIO' => 'mbi', 'MBI11_g24427_MAGBIO' => 'mbi', 'MBI11_g47319_MAGBIO' => 'mbi', 'MCO01G433' => 'mco', 'MD00G1187800' => 'mdo', 'MD04G1226500' => 'mdo', 'MD05G1203900' => 'mdo', 'MD10G1191100' => 'mdo', 'MD12G1243500' => 'mdo', 'MD13G1207000' => 'mdo', 'MD13G1207100' => 'mdo', 'MD16G1208600' => 'mdo', 'Medtr1g050352' => 'mtr', 'Medtr1g070385' => 'mtr', 'Medtr1g070450' => 'mtr', 'Medtr1g075200' => 'mtr', 'Medtr1g075250' => 'mtr', 'Medtr1g075260' => 'mtr', 'Medtr1g475250' => 'mtr', 'Medtr4g075450' => 'mtr', 'Medtr7g096300' => 'mtr', 'Medtr8g105110' => 'mtr', 'MELO3C006470.2' => 'cme', 'MELO3C006471.2' => 'cme', 'MELO3C020772.2' => 'cme', 'MELO3C026780.2' => 'cme', 'MELO3C026781.2' => 'cme', 'Migut.D00390' => 'egut', 'Migut.G00435' => 'egut', 'Migut.G00436' => 'egut', 'Migut.G00718' => 'egut', 'MSTRG.21891' => 'ama', 'MSTRG.26910' => 'ama', 'MSTRG.4099' => 'ama', 'MSTRG.9925' => 'ama', 'Nitab4.5_0000165g0010' => 'nta', 'Nitab4.5_0000209g0180' => 'nta', 'Nitab4.5_0000244g0440' => 'nta', 'Nitab4.5_0000525g0220' => 'nta', 'Nitab4.5_0001597g0020' => 'nta', 'Nitab4.5_0001878g0040' => 'nta', 'Nitab4.5_0001878g0060' => 'nta', 'Nitab4.5_0002838g0100' => 'nta', 'Nitab4.5_0002838g0120' => 'nta', 'Nitab4.5_0004798g0030' => 'nta', 'Nitab4.5_0005420g0010' => 'nta', 'Nitab4.5_0005507g0010' => 'nta', 'Nitab4.5_0005574g0020' => 'nta', 'Nitab4.5_0005838g0010' => 'nta', 'Nitab4.5_0010580g0020' => 'nta', 'Nn1g02599' => 'nnu', 'Nn1g02608' => 'nnu', 'Nn3g17742' => 'nnu', 'Nn3g19534' => 'nnu', 'Nn3g19535' => 'nnu', 'Oeu008790.1' => 'oeu', 'Oeu008792.1' => 'oeu', 'Oeu032590.1' => 'oeu', 'Oeu035349.1' => 'oeu', 'Oeu049791.1' => 'oeu', 'Os01g0774500' => 'osa', 'Os03g0628800' => 'osa', 'Os03g0798600' => 'osa', 'Os05g0508800' => 'osa', 'Peaxi162Scf00036g02018' => 'pax', 'Peaxi162Scf00578g00032' => 'pax', 'Peaxi162Scf00578g00317' => 'pax', 'Peaxi162Scf00785g00114' => 'pax', 'Peaxi162Scf00813g00119' => 'pax', 'Peaxi162Scf00906g00227' => 'pax', 'PGR004G0875' => 'pgr', 'PGR004G2424' => 'pgr', 'PGR031G1239' => 'pgr', 'PGR031G2474' => 'pgr', 'PGR044G0423' => 'pgr', 'PGSC0003DMG400001128' => 'stu', 'PGSC0003DMG400007336' => 'stu', 'PGSC0003DMG400016318' => 'stu', 'PGSC0003DMG400016319' => 'stu', 'PGSC0003DMG400018074' => 'stu', 'Phvul.001G157700' => 'pvu', 'Phvul.002G148550' => 'pvu', 'Phvul.002G320200' => 'pvu', 'Phvul.003G089200' => 'pvu', 'Phvul.007G126000' => 'pvu', 'Phvul.007G126100' => 'pvu', 'Phvul.007G178000' => 'pvu', 'Phvul.007G178200' => 'pvu', 'Potri.002G043000' => 'ptr', 'Potri.002G043200' => 'ptr', 'Potri.003G123750' => 'ptr', 'Potri.005G055401' => 'ptr', 'Potri.005G219700' => 'ptr', 'Potri.005G220000' => 'ptr', 'Potri.008G161901' => 'ptr', 'Potri.008G162000' => 'ptr', 'Potri.008G162400' => 'ptr', 'Potri.010G076900' => 'ptr', 'Pp3c12_9180' => 'ppa', 'Pp3c13_19770' => 'ppa', 'Pp3c14_22950' => 'ppa', 'Pp3c16_12160' => 'ppa', 'Pp3c27_7820' => 'ppa', 'Pp3c2_3490' => 'ppa', 'Pp3c3_23700' => 'ppa', 'Pp3c3_36520' => 'ppa', 'Pp3c4_15250' => 'ppa', 'PRCOL_00007002' => 'pco', 'Prupe.1G030600' => 'ppe', 'Prupe.1G030700' => 'ppe', 'Prupe.6G345200' => 'ppe', 'Prupe.8G230300' => 'ppe', 'Prupe.8G230500' => 'ppe', 'Psat3g059600' => 'psa', 'Psat5g200920' => 'psa', 'Psat6g056440' => 'psa', 'Psat6g057360' => 'psa', 'Psat6g134120' => 'psa', 'Psat6g134160' => 'psa', 'Psat7g008640' => 'psa', 'Psat7g185240' => 'psa', 'PSO017G1330' => 'pso', 'PSO063G6097' => 'pso', 'PSO170G0835' => 'pso', 'PSO170G2499' => 'pso', 'PSO210G5058' => 'pso', 'PSO210G6154' => 'pso', 'PSO585G0031' => 'pso', 'PSO832G0264' => 'pso', 'PSO832G4288' => 'pso', 'QL03p027355' => 'qlo', 'QL03p027430' => 'qlo', 'QL04p081380' => 'qlo', 'QL06p015642' => 'qlo', 'QL06p015650' => 'qlo', 'QL06p015686' => 'qlo', 'QL12p042927' => 'qlo', 'QL93p1863_0035' => 'qlo', 'RcHm_v2.0_Chr3g0450581' => 'rch', 'RcHm_v2.0_Chr4g0390371' => 'rch', 'RcHm_v2.0_Chr4g0390381' => 'rch', 'RcHm_v2.0_Chr4g0390491' => 'rch', 'RcHm_v2.0_Chr4g0390501' => 'rch', 'RcHm_v2.0_Chr6g0289231' => 'rch', 'Rhsim04G0190400' => 'rsi', 'Rhsim04G0190500' => 'rsi', 'Rhsim04G0190600' => 'rsi', 'Rhsim13G0031400' => 'rsi', 'Rhsim13G0165600' => 'rsi', 'RhsimUnG0114600' => 'rsi', 'RhsimUnG0114700' => 'rsi', 'Sabra02G0034800' => 'sbr', 'Sabra02G0035100' => 'sbr', 'Sabra05G0168600' => 'sbr', 'Sabra05G0168800' => 'sbr', 'Sabra08G0123700' => 'sbr', 'Sabra10G0031900' => 'sbr', 'Sabra13G0039000' => 'sbr', 'SalBow2G0782' => 'sbo', 'SalBow2G1403' => 'sbo', 'SalBow4G0074' => 'sbo', 'SalBow4G2635' => 'sbo', 'SalBow5G3010' => 'sbo', 'Sc05g0000870' => 'sci', 'Sc05g0000890' => 'sci', 'Sc13g0005000' => 'sci', 'Sc13g0005030' => 'sci', 'Sc19g0003790' => 'sci', 'Sc19g0003800' => 'sci', 'Sed0003467' => 'sed', 'Sed0009355' => 'sed', 'Sed0009894' => 'sed', 'Sed0011972' => 'sed', 'Sed0021483' => 'sed', 'Sed0021750' => 'sed', 'Sed0026279' => 'sed', 'SEGI_05312' => 'sgi', 'SEGI_10112' => 'sgi', 'SEGI_15835' => 'sgi', 'SEGI_30386' => 'sgi', 'SEGI_34122' => 'sgi', 'SEGI_35063' => 'sgi', 'SGA_v2.0_scaffold101G29794' => 'sas', 'SGA_v2.0_scaffold1G00573' => 'sas', 'SGA_v2.0_scaffold79G25637' => 'sas', 'SGA_v2.0_scaffold88G27283' => 'sas', 'SGA_v2.0_scaffold88G27285' => 'sas', 'SGA_v2.0_scaffold88G27331' => 'sas', 'SHI09937' => 'shi', 'SMO119G0302' => 'smo', 'SMO137G0231' => 'smo', 'SMO367G1151' => 'smo', 'Solyc02g082000.3' => 'sly', 'Solyc06g031670.3' => 'sly', 'Solyc06g053810.3' => 'sly', 'Solyc07g025457.1' => 'sly', 'Solyc08g059740.1' => 'sly', 'Solyc08g059750.3' => 'sly', 'Solyc09g083370.3' => 'sly', 'Solyc12g038950.3' => 'sly', 'Sopen02g026630' => 'spe', 'Sopen06g018930' => 'spe', 'Sopen06g018940' => 'spe', 'Sopen08g009460' => 'spe', 'Sopen09g032290' => 'spe', 'Sp1g03080' => 'spa', 'Sp1g03090' => 'spa', 'Sp1g05480' => 'spa', 'Sp2g07860' => 'spa', 'Sp2g08430' => 'spa', 'Sp2g08440' => 'spa', 'Sp2g26200' => 'spa', 'Sp4g13170' => 'spa', 'Sp6g33840' => 'spa', 'SpUn1204_0010' => 'spa', 'TAR365G0908' => 'tar', 'TAR381G1270' => 'tar', 'TAR381G1651' => 'tar', 'TAR625G1131' => 'tar', 'TAR633G0962' => 'tar', 'TAR633G1729' => 'tar', 'TAR633G1864' => 'tar', 'TAR636G0221' => 'tar', 'TAR636G0314' => 'tar', 'TAR636G3202' => 'tar', 'THA.LOC104800805' => 'tha', 'THA.LOC104801096' => 'tha', 'THA.LOC104801555' => 'tha', 'THA.LOC104808491' => 'tha', 'THA.LOC104808595' => 'tha', 'THA.LOC104815985' => 'tha', 'THA.LOC104822250' => 'tha', 'THA.LOC104826071' => 'tha', 'Thecc.01G265200' => 'tca', 'Thecc.01G265300' => 'tca', 'Thecc.01G265700' => 'tca', 'Thecc.03G109100' => 'tca', 'Thecc.04G245900' => 'tca', 'Thecc.04G246000' => 'tca', 'Thhalv10003334m.g' => 'esa', 'Thhalv10005508m.g' => 'esa', 'Thhalv10005643m.g' => 'esa', 'Thhalv10007316m.g' => 'esa', 'Thhalv10009006m.g' => 'esa', 'Thhalv10009309m.g' => 'esa', 'Thhalv10014917m.g' => 'esa', 'Thhalv10014919m.g' => 'esa', 'Thhalv10015393m.g' => 'esa', 'Thhalv10016515m.g' => 'esa', 'Thhalv10029242m.g' => 'esa', 'TPR.G16654' => 'tpr', 'TPR.G20589' => 'tpr', 'TPR.G23029' => 'tpr', 'TPR.G27731' => 'tpr', 'TPR.G28889' => 'tpr', 'TPR.G28899' => 'tpr', 'TPR.G30846' => 'tpr', 'TPR.G5452' => 'tpr', 'TPR.G5713' => 'tpr', 'TPR.G9046' => 'tpr', 'TPR.G9061' => 'tpr', 'TWI09G1075' => 'twi', 'TWI12G0806' => 'twi', 'TWI18G0108' => 'twi', 'TWI53G1361' => 'twi', 'TWI73G0185' => 'twi', 'TWI73G0427' => 'twi', 'unitig_37.g12001' => 'ugi', 'unitig_747.g21660' => 'ugi', 'unitig_748.g7232' => 'ugi', 'unitig_748.g7315' => 'ugi', 'unitig_85.g27262' => 'ugi', 'unitig_92.g28220' => 'ugi', 'vmacro02632' => 'vma', 'vmacro08410' => 'vma', 'vmacro08411' => 'vma', 'vmacro15407' => 'vma', 'VMungo0251G3619' => 'vmu', 'VMungo0720G1204' => 'vmu', 'VMungo0720G1918' => 'vmu', 'VMungo0720G2387' => 'vmu', 'VMungo0720G2961' => 'vmu', 'VMungo1215G2154' => 'vmu', 'VMungo1383G2411' => 'vmu', 'Zm00001eb051130' => 'zma', 'Zm00001eb116830' => 'zma', 'Zm00001eb116850' => 'zma', 'Zm00001eb151740' => 'zma', 'Zm00001eb292360' => 'zma', 'Zm00001eb301640' => 'zma' ) $gf_id = 'HOM05D000856' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000856' ) $data_identifier = 'HOM05D000856' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 13, 'ath' => (int) 10, 'atr' => (int) 1, 'acertr' => (int) 8, 'cqu' => (int) 6, 'bca' => (int) 21, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 11, 'car' => (int) 9, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 8, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 5, 'fan' => (int) 16, 'fve' => (int) 6, 'gma' => (int) 11, 'ghi' => (int) 19, 'gra' => (int) 9, 'vvi' => (int) 7, 'han' => (int) 17, 'cav' => (int) 5, 'hma' => (int) 2, 'vpl' => (int) 2, 'sun' => (int) 7, 'lal' => (int) 9, 'lja' => (int) 5, 'lonja' => (int) 9, 'lsa' => (int) 5, 'mes' => (int) 8, 'mpo' => (int) 3, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 10, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 15, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 9, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 9, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 6, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 5, 'spa' => (int) 10, 'tar' => (int) 10, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 11, 'tpr' => (int) 11, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 4, 'vmu' => (int) 7, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb301640' $species_info = array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ) $local_species = 'cpa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000856', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p00010' => 'bna', 'A03p04160' => 'bna', 'A03p17160' => 'bna', 'A04p23370' => 'bna', 'A05p14860' => 'bna', 'A08p37020' => 'bna', 'A09p08050' => 'bna', 'A09p66800' => 'bna', 'A09p67940' => 'bna', 'A10p02680' => 'bna', 'A10p05320' => 'bna', 'Aa31LG1G20560' => 'aar', 'Aa31LG1G20610' => 'aar', 'Aa31LG1G7810' => 'aar', 'Aa31LG5G3590' => 'aar', 'Aa31LG5G6140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3819' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4683' => 'aag', 'Actinidia04480' => 'ach', 'Actinidia05466' => 'ach', 'Actinidia08445' => 'ach', 'Actinidia21170' => 'ach', 'Actinidia24812' => 'ach', 'Actinidia24951' => 'ach', 'Actinidia40088' => 'ach', 'Ah.02g111660' => 'amhyb', 'Ah.11g048900' => 'amhyb', 'Ah.11g049910' => 'amhyb', 'AL1G13870' => 'aly', 'AL1G13880' => 'aly', 'AL1G16760' => 'aly', 'AL390U10020' => 'aly', 'AL4G25520' => 'aly', 'AL6G19890' => 'aly', 'AL6G19900' => 'aly', 'AL6G19910' => 'aly', 'AL8G40100' => 'aly', 'Aqoxy2G03562' => 'aox', 'Aqoxy5G00316' => 'aox', 'Aqoxy5G00926' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1628KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1H403S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2FU6SJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.882I6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8YRY2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YN1SN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AF70II' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZA8L1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F916KL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHRD8H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KTZ8QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S22EMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8M29T' => 'arhy', 'AT1G04270' => 'ath', 'AT1G04280' => 'ath', 'AT1G06750' => 'ath', 'AT1G33850' => 'ath', 'AT2G30630' => 'ath', 'AT5G09490' => 'ath', 'AT5G09500' => 'ath', 'AT5G09510' => 'ath', 'AT5G43640' => 'ath', 'AT5G63070' => 'ath', 'ATR0605G315' => 'atr', 'Atru.chr11.175' => 'acertr', 'Atru.chr11.653' => 'acertr', 'Atru.chr3.1616' => 'acertr', 'Atru.chr4.2230' => 'acertr', 'Atru.chr4.2232' => 'acertr', 'Atru.chr5.1598' => 'acertr', 'Atru.chr5.1600' => 'acertr', 'Atru.chr5.2188' => 'acertr', 'AUR62008326' => 'cqu', 'AUR62011922' => 'cqu', 'AUR62011924' => 'cqu', 'AUR62021771' => 'cqu', 'AUR62032237' => 'cqu', 'AUR62032240' => 'cqu', 'BcaB01g05572' => 'bca', 'BcaB02g10337' => 'bca', 'BcaB04g19944' => 'bca', 'BcaB05g21548' => 'bca', 'BcaB05g21549' => 'bca', 'BcaB05g23227' => 'bca', 'BcaB06g26256' => 'bca', 'BcaB06g26257' => 'bca', 'BcaB06g28379' => 'bca', 'BcaC02g11159' => 'bca', 'BcaC03g13258' => 'bca', 'BcaC03g13259' => 'bca', 'BcaC05g24456' => 'bca', 'BcaC05g24457' => 'bca', 'BcaC07g36922' => 'bca', 'BcaC07g36923' => 'bca', 'BcaC07g42050' => 'bca', 'BcaC07g42176' => 'bca', 'BcaC07g42195' => 'bca', 'BcaC07g42196' => 'bca', 'BcaNung06674' => 'bca', 'BolC2t06351H' => 'bol', 'BolC2t06352H' => 'bol', 'BolC3t12993H' => 'bol', 'BolC4t23525H' => 'bol', 'BolC4t27475H' => 'bol', 'BolC5t29025H' => 'bol', 'BolC5t29026H' => 'bol', 'BolC8t46898H' => 'bol', 'BolC8t46899H' => 'bol', 'BolC8t52630H' => 'bol', 'BolC8t52765H' => 'bol', 'BolC9t53824H' => 'bol', 'BraA03t09760Z' => 'bra', 'BraA03t10990Z' => 'bra', 'BraA05t20413Z' => 'bra', 'BraA08t35602Z' => 'bra', 'BraA09t36458Z' => 'bra', 'BraA09t42018Z' => 'bra', 'BraA09t42129Z' => 'bra', 'BraA10t42536Z' => 'bra', 'BraA10t42537Z' => 'bra', 'C01p10690' => 'bna', 'C02p03890' => 'bna', 'C02p03900' => 'bna', 'C03p04620' => 'bna', 'C04p19870' => 'bna', 'C04p59670' => 'bna', 'C05p02460' => 'bna', 'C05p02470' => 'bna', 'C08p00980' => 'bna', 'C08p00990' => 'bna', 'C08p51030' => 'bna', 'C08p52360' => 'bna', 'C09p09120' => 'bna', 'CAN.G19.15' => 'can', 'CAN.G251.10' => 'can', 'CAN.G251.9' => 'can', 'CAN.G398.24' => 'can', 'CAN.G410.32' => 'can', 'CAN.G881.2' => 'can', 'CANSAT01G3025' => 'cansat', 'CANSAT78G1211' => 'cansat', 'CANSAT78G1218' => 'cansat', 'CANSAT78G1521' => 'cansat', 'CANSAT78G1670' => 'cansat', 'CARHR003600' => 'chi', 'CARHR003610' => 'chi', 'CARHR006290' => 'chi', 'CARHR006430' => 'chi', 'CARHR124110' => 'chi', 'CARHR203870' => 'chi', 'CARHR203880' => 'chi', 'CARHR203890' => 'chi', 'CARHR276880' => 'chi', 'Carub.0001s0346' => 'cru', 'Carub.0001s0347' => 'cru', 'Carub.0001s0607' => 'cru', 'Carub.0003s2768' => 'cru', 'Carub.0003s2769' => 'cru', 'Carub.0004s1178' => 'cru', 'Carub.0006s0806' => 'cru', 'Carub.0006s0807' => 'cru', 'Carub.0006s0808' => 'cru', 'Carub.0008s0501' => 'cru', 'Carub.0008s2379' => 'cru', 'Ca_08655_v3' => 'car', 'Ca_08922_v3' => 'car', 'Ca_08923_v3' => 'car', 'Ca_09119_v3' => 'car', 'Ca_09703_v3' => 'car', 'Ca_09705_v3' => 'car', 'Ca_09835_v3' => 'car', 'Ca_26403_v3' => 'car', 'Ca_30719_v3' => 'car', 'CBR_g17958' => 'cbr', 'CBR_g40516' => 'cbr', 'Cc00_g05350' => 'ccan', 'Cc01_g18690' => 'ccan', 'Cc03_g04830' => 'ccan', 'Cc03_g04850' => 'ccan', 'CDE02G4469' => 'cde', 'CDE06G0883' => 'cde', 'CDE06G1295' => 'cde', 'CDE06G1390' => 'cde', 'CDE07G0584' => 'cde', 'CDE07G1084' => 'cde', 'CDE08G1259' => 'cde', 'Cfa002341' => 'cfa', 'Cfa024337' => 'cfa', 'Ciclev10004749m.g' => 'ccl', 'Ciclev10006127m.g' => 'ccl', 'Ciclev10019720m.g' => 'ccl', 'Ciclev10022652m.g' => 'ccl', 'CiPaw.01G190400' => 'cil', 'CiPaw.01G190500' => 'cil', 'CiPaw.02G116400' => 'cil', 'CiPaw.02G116500' => 'cil', 'CiPaw.04G183000' => 'cil', 'CiPaw.04G183300' => 'cil', 'ClCG05G004610' => 'cla', 'ClCG05G004620' => 'cla', 'ClCG06G006730' => 'cla', 'ClCG06G006740' => 'cla', 'ClCG11G003690' => 'cla', 'COL.COLO4_08276' => 'col', 'COL.COLO4_08277' => 'col', 'COL.COLO4_15787' => 'col', 'COL.COLO4_15789' => 'col', 'Cpa.g.c44815' => 'cpa', 'Cpa.g.sc52.144' => 'cpa', 'Cpa.g.sc58.46' => 'cpa', 'Cpa.g.sc58.47' => 'cpa', 'Cre08.g360900' => 'cre', 'CsaV3_2G013030' => 'csa', 'CsaV3_2G013050' => 'csa', 'CsaV3_2G015620' => 'csa', 'CsaV3_3G012590' => 'csa', 'CsaV3_3G012600' => 'csa', 'CSS0001641' => 'camsi', 'CSS0008310' => 'camsi', 'CSS0013011' => 'camsi', 'CSS0017147' => 'camsi', 'CSS0022970' => 'camsi', 'CSS0025655' => 'camsi', 'CSS0028665' => 'camsi', 'CSS0029117' => 'camsi', 'CSS0032024' => 'camsi', 'CSS0039681' => 'camsi', 'CSS0046516' => 'camsi', 'CSS0050307' => 'camsi', 'DCAR_005871' => 'dca', 'DCAR_007342' => 'dca', 'DCAR_024228' => 'dca', 'DCAR_027277' => 'dca', 'DCAR_030718' => 'dca', 'Dinv20287' => 'din', 'Dinv22461' => 'din', 'Dinv22464' => 'din', 'Dinv29912' => 'din', 'Dinv29913' => 'din', 'Dinv34580' => 'din', 'Dinv34582' => 'din', 'Dinv44632' => 'din', 'Duzib052G0266' => 'dzi', 'Duzib133G0907' => 'dzi', 'Duzib133G1034' => 'dzi', 'Duzib138G0207' => 'dzi', 'Duzib138G0491' => 'dzi', 'Duzib151G0812' => 'dzi', 'Duzib151G1166' => 'dzi', 'Duzib168G0192' => 'dzi', 'Duzib211G0077' => 'dzi', 'Duzib212G0429' => 'dzi', 'Duzib212G0472' => 'dzi', 'ECA233G2617' => 'eca', 'ECA236G4188' => 'eca', 'ECA240G0936' => 'eca', 'ECA240G1129' => 'eca', 'ECA247G0623' => 'eca', 'EL10Ac5g10451' => 'bvu', 'EL10Ac5g10453' => 'bvu', 'EL10Ac5g10894' => 'bvu', 'Eucgr.H00192' => 'egr', 'Eucgr.H00193' => 'egr', 'Eucgr.H00194' => 'egr', 'Eucgr.J01562' => 'egr', 'Eucgr.K03301' => 'egr', 'FAN02G0632' => 'fan', 'FAN05G5378' => 'fan', 'FAN09G3247' => 'fan', 'FAN12G0435' => 'fan', 'FAN12G2426' => 'fan', 'FAN14G1707' => 'fan', 'FAN14G4725' => 'fan', 'FAN15G2071' => 'fan', 'FAN17G3065' => 'fan', 'FAN19G1376' => 'fan', 'FAN20G0354' => 'fan', 'FAN20G2429' => 'fan', 'FAN20G2658' => 'fan', 'FAN24G2343' => 'fan', 'FAN27G2362' => 'fan', 'FAN28G1765' => 'fan', 'FvH4_1g16020' => 'fve', 'FvH4_2g04890' => 'fve', 'FvH4_2g22270' => 'fve', 'FvH4_4g02630' => 'fve', 'FvH4_4g02640' => 'fve', 'FvH4_6g02650' => 'fve', 'Glyma.02G140600' => 'gma', 'Glyma.03G159900' => 'gma', 'Glyma.05G234800' => 'gma', 'Glyma.07G269600' => 'gma', 'Glyma.08G042300' => 'gma', 'Glyma.10G033500' => 'gma', 'Glyma.10G185200' => 'gma', 'Glyma.17G004300' => 'gma', 'Glyma.19G161900' => 'gma', 'Glyma.20G205100' => 'gma', 'Glyma.20G205200' => 'gma', 'Gohir.A01G139101' => 'ghi', 'Gohir.A02G035600' => 'ghi', 'Gohir.A02G117901' => 'ghi', 'Gohir.A07G210100' => 'ghi', 'Gohir.A07G210200' => 'ghi', 'Gohir.A08G061100' => 'ghi', 'Gohir.A09G223000' => 'ghi', 'Gohir.A09G223100' => 'ghi', 'Gohir.A10G113900' => 'ghi', 'Gohir.A10G114000' => 'ghi', 'Gohir.D02G042300' => 'ghi', 'Gohir.D07G216100' => 'ghi', 'Gohir.D07G216200' => 'ghi', 'Gohir.D08G070400' => 'ghi', 'Gohir.D09G225000' => 'ghi', 'Gohir.D09G225100' => 'ghi', 'Gohir.D10G152300' => 'ghi', 'Gohir.D10G153200' => 'ghi', 'Gohir.D11G133701' => 'ghi', 'Gorai.004G074100' => 'gra', 'Gorai.005G046800' => 'gra', 'Gorai.006G246500' => 'gra', 'Gorai.006G246600' => 'gra', 'Gorai.007G142900' => 'gra', 'Gorai.011G171000' => 'gra', 'Gorai.011G171100' => 'gra', 'Gorai.013G104300' => 'gra', 'Gorai.013G104400' => 'gra', 'GSVIVG01000754001' => 'vvi', 'GSVIVG01000756001' => 'vvi', 'GSVIVG01010903001' => 'vvi', 'GSVIVG01017623001' => 'vvi', 'GSVIVG01018113001' => 'vvi', 'GSVIVG01018116001' => 'vvi', 'GSVIVG01018118001' => 'vvi', 'HanXRQChr03g0076211' => 'han', 'HanXRQChr03g0092431' => 'han', 'HanXRQChr03g0092441' => 'han', 'HanXRQChr03g0092591' => 'han', 'HanXRQChr03g0092671' => 'han', 'HanXRQChr03g0092681' => 'han', 'HanXRQChr03g0092691' => 'han', 'HanXRQChr03g0092701' => 'han', 'HanXRQChr03g0092721' => 'han', 'HanXRQChr03g0092731' => 'han', 'HanXRQChr04g0113681' => 'han', 'HanXRQChr10g0281371' => 'han', 'HanXRQChr11g0337141' => 'han', 'HanXRQChr13g0424521' => 'han', 'HanXRQChr13g0424531' => 'han', 'HanXRQChr13g0424541' => 'han', 'HanXRQChr16g0498221' => 'han', 'Haze_04377' => 'cav', 'Haze_11298' => 'cav', 'Haze_24547' => 'cav', 'Haze_24550' => 'cav', 'Haze_26587' => 'cav', 'Hma1.2p1_0650F.1_g195410' => 'hma', 'Hma1.2p1_0893F.1_g233470' => 'hma', 'HPP92_006508' => 'vpl', 'HPP92_024780' => 'vpl', 'Hund02688' => 'sun', 'Hund09380' => 'sun', 'Hund09381' => 'sun', 'Hund09832' => 'sun', 'Hund09833' => 'sun', 'Hund11351' => 'sun', 'Hund11513' => 'sun', 'Lalb_Chr06g0162591' => 'lal', 'Lalb_Chr06g0162601' => 'lal', 'Lalb_Chr06g0169321' => 'lal', 'Lalb_Chr09g0330951' => 'lal', 'Lalb_Chr16g0387631' => 'lal', 'Lalb_Chr21g0306241' => 'lal', 'Lalb_Chr25g0290051' => 'lal', 'Lalb_Chr25g0290061' => 'lal', 'Lalb_Chr25g0290071' => 'lal', 'Lj1g0003876' => 'lja', 'Lj1P1207T36' => 'lonja', 'Lj2C1156G12' => 'lonja', 'Lj3A793G39' => 'lonja', 'Lj3C580G2' => 'lonja', 'Lj3C780G2' => 'lonja', 'Lj3C780T4' => 'lonja', 'Lj3C793G9' => 'lonja', 'Lj4g0012960' => 'lja', 'Lj5g0021252' => 'lja', 'Lj5g0021484' => 'lja', 'Lj5g0024528' => 'lja', 'Lj6A399T12' => 'lonja', 'Lj6A656G65' => 'lonja', 'Lsat_1_v5_gn_3_125500' => 'lsa', 'Lsat_1_v5_gn_3_125540' => 'lsa', 'Lsat_1_v5_gn_5_72701' => 'lsa', 'Lsat_1_v5_gn_8_91560' => 'lsa', 'Lsat_1_v5_gn_9_9640' => 'lsa', 'Manes.01G200600' => 'mes', 'Manes.01G200700' => 'mes', 'Manes.03G168900' => 'mes', 'Manes.03G169000' => 'mes', 'Manes.05G085801' => 'mes', 'Manes.05G086200' => 'mes', 'Manes.15G036700' => 'mes', 'Manes.15G036900' => 'mes', 'Mapoly0004s0172' => 'mpo', 'Mapoly0023s0001' => 'mpo', 'Mapoly0142s0012' => 'mpo', 'MBI01_g32854_MAGBIO' => 'mbi', 'MBI11_g24427_MAGBIO' => 'mbi', 'MBI11_g47319_MAGBIO' => 'mbi', 'MCO01G433' => 'mco', 'MD00G1187800' => 'mdo', 'MD04G1226500' => 'mdo', 'MD05G1203900' => 'mdo', 'MD10G1191100' => 'mdo', 'MD12G1243500' => 'mdo', 'MD13G1207000' => 'mdo', 'MD13G1207100' => 'mdo', 'MD16G1208600' => 'mdo', 'Medtr1g050352' => 'mtr', 'Medtr1g070385' => 'mtr', 'Medtr1g070450' => 'mtr', 'Medtr1g075200' => 'mtr', 'Medtr1g075250' => 'mtr', 'Medtr1g075260' => 'mtr', 'Medtr1g475250' => 'mtr', 'Medtr4g075450' => 'mtr', 'Medtr7g096300' => 'mtr', 'Medtr8g105110' => 'mtr', 'MELO3C006470.2' => 'cme', 'MELO3C006471.2' => 'cme', 'MELO3C020772.2' => 'cme', 'MELO3C026780.2' => 'cme', 'MELO3C026781.2' => 'cme', 'Migut.D00390' => 'egut', 'Migut.G00435' => 'egut', 'Migut.G00436' => 'egut', 'Migut.G00718' => 'egut', 'MSTRG.21891' => 'ama', 'MSTRG.26910' => 'ama', 'MSTRG.4099' => 'ama', 'MSTRG.9925' => 'ama', 'Nitab4.5_0000165g0010' => 'nta', 'Nitab4.5_0000209g0180' => 'nta', 'Nitab4.5_0000244g0440' => 'nta', 'Nitab4.5_0000525g0220' => 'nta', 'Nitab4.5_0001597g0020' => 'nta', 'Nitab4.5_0001878g0040' => 'nta', 'Nitab4.5_0001878g0060' => 'nta', 'Nitab4.5_0002838g0100' => 'nta', 'Nitab4.5_0002838g0120' => 'nta', 'Nitab4.5_0004798g0030' => 'nta', 'Nitab4.5_0005420g0010' => 'nta', 'Nitab4.5_0005507g0010' => 'nta', 'Nitab4.5_0005574g0020' => 'nta', 'Nitab4.5_0005838g0010' => 'nta', 'Nitab4.5_0010580g0020' => 'nta', 'Nn1g02599' => 'nnu', 'Nn1g02608' => 'nnu', 'Nn3g17742' => 'nnu', 'Nn3g19534' => 'nnu', 'Nn3g19535' => 'nnu', 'Oeu008790.1' => 'oeu', 'Oeu008792.1' => 'oeu', 'Oeu032590.1' => 'oeu', 'Oeu035349.1' => 'oeu', 'Oeu049791.1' => 'oeu', 'Os01g0774500' => 'osa', 'Os03g0628800' => 'osa', 'Os03g0798600' => 'osa', 'Os05g0508800' => 'osa', 'Peaxi162Scf00036g02018' => 'pax', 'Peaxi162Scf00578g00032' => 'pax', 'Peaxi162Scf00578g00317' => 'pax', 'Peaxi162Scf00785g00114' => 'pax', 'Peaxi162Scf00813g00119' => 'pax', 'Peaxi162Scf00906g00227' => 'pax', 'PGR004G0875' => 'pgr', 'PGR004G2424' => 'pgr', 'PGR031G1239' => 'pgr', 'PGR031G2474' => 'pgr', 'PGR044G0423' => 'pgr', 'PGSC0003DMG400001128' => 'stu', 'PGSC0003DMG400007336' => 'stu', 'PGSC0003DMG400016318' => 'stu', 'PGSC0003DMG400016319' => 'stu', 'PGSC0003DMG400018074' => 'stu', 'Phvul.001G157700' => 'pvu', 'Phvul.002G148550' => 'pvu', 'Phvul.002G320200' => 'pvu', 'Phvul.003G089200' => 'pvu', 'Phvul.007G126000' => 'pvu', 'Phvul.007G126100' => 'pvu', 'Phvul.007G178000' => 'pvu', 'Phvul.007G178200' => 'pvu', 'Potri.002G043000' => 'ptr', 'Potri.002G043200' => 'ptr', 'Potri.003G123750' => 'ptr', 'Potri.005G055401' => 'ptr', 'Potri.005G219700' => 'ptr', 'Potri.005G220000' => 'ptr', 'Potri.008G161901' => 'ptr', 'Potri.008G162000' => 'ptr', 'Potri.008G162400' => 'ptr', 'Potri.010G076900' => 'ptr', 'Pp3c12_9180' => 'ppa', 'Pp3c13_19770' => 'ppa', 'Pp3c14_22950' => 'ppa', 'Pp3c16_12160' => 'ppa', 'Pp3c27_7820' => 'ppa', 'Pp3c2_3490' => 'ppa', 'Pp3c3_23700' => 'ppa', 'Pp3c3_36520' => 'ppa', 'Pp3c4_15250' => 'ppa', 'PRCOL_00007002' => 'pco', 'Prupe.1G030600' => 'ppe', 'Prupe.1G030700' => 'ppe', 'Prupe.6G345200' => 'ppe', 'Prupe.8G230300' => 'ppe', 'Prupe.8G230500' => 'ppe', 'Psat3g059600' => 'psa', 'Psat5g200920' => 'psa', 'Psat6g056440' => 'psa', 'Psat6g057360' => 'psa', 'Psat6g134120' => 'psa', 'Psat6g134160' => 'psa', 'Psat7g008640' => 'psa', 'Psat7g185240' => 'psa', 'PSO017G1330' => 'pso', 'PSO063G6097' => 'pso', 'PSO170G0835' => 'pso', 'PSO170G2499' => 'pso', 'PSO210G5058' => 'pso', 'PSO210G6154' => 'pso', 'PSO585G0031' => 'pso', 'PSO832G0264' => 'pso', 'PSO832G4288' => 'pso', 'QL03p027355' => 'qlo', 'QL03p027430' => 'qlo', 'QL04p081380' => 'qlo', 'QL06p015642' => 'qlo', 'QL06p015650' => 'qlo', 'QL06p015686' => 'qlo', 'QL12p042927' => 'qlo', 'QL93p1863_0035' => 'qlo', 'RcHm_v2.0_Chr3g0450581' => 'rch', 'RcHm_v2.0_Chr4g0390371' => 'rch', 'RcHm_v2.0_Chr4g0390381' => 'rch', 'RcHm_v2.0_Chr4g0390491' => 'rch', 'RcHm_v2.0_Chr4g0390501' => 'rch', 'RcHm_v2.0_Chr6g0289231' => 'rch', 'Rhsim04G0190400' => 'rsi', 'Rhsim04G0190500' => 'rsi', 'Rhsim04G0190600' => 'rsi', 'Rhsim13G0031400' => 'rsi', 'Rhsim13G0165600' => 'rsi', 'RhsimUnG0114600' => 'rsi', 'RhsimUnG0114700' => 'rsi', 'Sabra02G0034800' => 'sbr', 'Sabra02G0035100' => 'sbr', 'Sabra05G0168600' => 'sbr', 'Sabra05G0168800' => 'sbr', 'Sabra08G0123700' => 'sbr', 'Sabra10G0031900' => 'sbr', 'Sabra13G0039000' => 'sbr', 'SalBow2G0782' => 'sbo', 'SalBow2G1403' => 'sbo', 'SalBow4G0074' => 'sbo', 'SalBow4G2635' => 'sbo', 'SalBow5G3010' => 'sbo', 'Sc05g0000870' => 'sci', 'Sc05g0000890' => 'sci', 'Sc13g0005000' => 'sci', 'Sc13g0005030' => 'sci', 'Sc19g0003790' => 'sci', 'Sc19g0003800' => 'sci', 'Sed0003467' => 'sed', 'Sed0009355' => 'sed', 'Sed0009894' => 'sed', 'Sed0011972' => 'sed', 'Sed0021483' => 'sed', 'Sed0021750' => 'sed', 'Sed0026279' => 'sed', 'SEGI_05312' => 'sgi', 'SEGI_10112' => 'sgi', 'SEGI_15835' => 'sgi', 'SEGI_30386' => 'sgi', 'SEGI_34122' => 'sgi', 'SEGI_35063' => 'sgi', 'SGA_v2.0_scaffold101G29794' => 'sas', 'SGA_v2.0_scaffold1G00573' => 'sas', 'SGA_v2.0_scaffold79G25637' => 'sas', 'SGA_v2.0_scaffold88G27283' => 'sas', 'SGA_v2.0_scaffold88G27285' => 'sas', 'SGA_v2.0_scaffold88G27331' => 'sas', 'SHI09937' => 'shi', 'SMO119G0302' => 'smo', 'SMO137G0231' => 'smo', 'SMO367G1151' => 'smo', 'Solyc02g082000.3' => 'sly', 'Solyc06g031670.3' => 'sly', 'Solyc06g053810.3' => 'sly', 'Solyc07g025457.1' => 'sly', 'Solyc08g059740.1' => 'sly', 'Solyc08g059750.3' => 'sly', 'Solyc09g083370.3' => 'sly', 'Solyc12g038950.3' => 'sly', 'Sopen02g026630' => 'spe', 'Sopen06g018930' => 'spe', 'Sopen06g018940' => 'spe', 'Sopen08g009460' => 'spe', 'Sopen09g032290' => 'spe', 'Sp1g03080' => 'spa', 'Sp1g03090' => 'spa', 'Sp1g05480' => 'spa', 'Sp2g07860' => 'spa', 'Sp2g08430' => 'spa', 'Sp2g08440' => 'spa', 'Sp2g26200' => 'spa', 'Sp4g13170' => 'spa', 'Sp6g33840' => 'spa', 'SpUn1204_0010' => 'spa', 'TAR365G0908' => 'tar', 'TAR381G1270' => 'tar', 'TAR381G1651' => 'tar', 'TAR625G1131' => 'tar', 'TAR633G0962' => 'tar', 'TAR633G1729' => 'tar', 'TAR633G1864' => 'tar', 'TAR636G0221' => 'tar', 'TAR636G0314' => 'tar', 'TAR636G3202' => 'tar', 'THA.LOC104800805' => 'tha', 'THA.LOC104801096' => 'tha', 'THA.LOC104801555' => 'tha', 'THA.LOC104808491' => 'tha', 'THA.LOC104808595' => 'tha', 'THA.LOC104815985' => 'tha', 'THA.LOC104822250' => 'tha', 'THA.LOC104826071' => 'tha', 'Thecc.01G265200' => 'tca', 'Thecc.01G265300' => 'tca', 'Thecc.01G265700' => 'tca', 'Thecc.03G109100' => 'tca', 'Thecc.04G245900' => 'tca', 'Thecc.04G246000' => 'tca', 'Thhalv10003334m.g' => 'esa', 'Thhalv10005508m.g' => 'esa', 'Thhalv10005643m.g' => 'esa', 'Thhalv10007316m.g' => 'esa', 'Thhalv10009006m.g' => 'esa', 'Thhalv10009309m.g' => 'esa', 'Thhalv10014917m.g' => 'esa', 'Thhalv10014919m.g' => 'esa', 'Thhalv10015393m.g' => 'esa', 'Thhalv10016515m.g' => 'esa', 'Thhalv10029242m.g' => 'esa', 'TPR.G16654' => 'tpr', 'TPR.G20589' => 'tpr', 'TPR.G23029' => 'tpr', 'TPR.G27731' => 'tpr', 'TPR.G28889' => 'tpr', 'TPR.G28899' => 'tpr', 'TPR.G30846' => 'tpr', 'TPR.G5452' => 'tpr', 'TPR.G5713' => 'tpr', 'TPR.G9046' => 'tpr', 'TPR.G9061' => 'tpr', 'TWI09G1075' => 'twi', 'TWI12G0806' => 'twi', 'TWI18G0108' => 'twi', 'TWI53G1361' => 'twi', 'TWI73G0185' => 'twi', 'TWI73G0427' => 'twi', 'unitig_37.g12001' => 'ugi', 'unitig_747.g21660' => 'ugi', 'unitig_748.g7232' => 'ugi', 'unitig_748.g7315' => 'ugi', 'unitig_85.g27262' => 'ugi', 'unitig_92.g28220' => 'ugi', 'vmacro02632' => 'vma', 'vmacro08410' => 'vma', 'vmacro08411' => 'vma', 'vmacro15407' => 'vma', 'VMungo0251G3619' => 'vmu', 'VMungo0720G1204' => 'vmu', 'VMungo0720G1918' => 'vmu', 'VMungo0720G2387' => 'vmu', 'VMungo0720G2961' => 'vmu', 'VMungo1215G2154' => 'vmu', 'VMungo1383G2411' => 'vmu', 'Zm00001eb051130' => 'zma', 'Zm00001eb116830' => 'zma', 'Zm00001eb116850' => 'zma', 'Zm00001eb151740' => 'zma', 'Zm00001eb292360' => 'zma', 'Zm00001eb301640' => 'zma' ), 'gf_id' => 'HOM05D000856', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000856' ), 'data_identifier' => 'HOM05D000856', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000856', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p00010' => 'bna', 'A03p04160' => 'bna', 'A03p17160' => 'bna', 'A04p23370' => 'bna', 'A05p14860' => 'bna', 'A08p37020' => 'bna', 'A09p08050' => 'bna', 'A09p66800' => 'bna', 'A09p67940' => 'bna', 'A10p02680' => 'bna', 'A10p05320' => 'bna', 'Aa31LG1G20560' => 'aar', 'Aa31LG1G20610' => 'aar', 'Aa31LG1G7810' => 'aar', 'Aa31LG5G3590' => 'aar', 'Aa31LG5G6140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3819' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4683' => 'aag', 'Actinidia04480' => 'ach', 'Actinidia05466' => 'ach', 'Actinidia08445' => 'ach', 'Actinidia21170' => 'ach', 'Actinidia24812' => 'ach', 'Actinidia24951' => 'ach', 'Actinidia40088' => 'ach', 'Ah.02g111660' => 'amhyb', 'Ah.11g048900' => 'amhyb', 'Ah.11g049910' => 'amhyb', 'AL1G13870' => 'aly', 'AL1G13880' => 'aly', 'AL1G16760' => 'aly', 'AL390U10020' => 'aly', 'AL4G25520' => 'aly', 'AL6G19890' => 'aly', 'AL6G19900' => 'aly', 'AL6G19910' => 'aly', 'AL8G40100' => 'aly', 'Aqoxy2G03562' => 'aox', 'Aqoxy5G00316' => 'aox', 'Aqoxy5G00926' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1628KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1H403S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2FU6SJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.882I6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8YRY2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YN1SN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AF70II' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZA8L1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F916KL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHRD8H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KTZ8QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S22EMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8M29T' => 'arhy', 'AT1G04270' => 'ath', 'AT1G04280' => 'ath', 'AT1G06750' => 'ath', 'AT1G33850' => 'ath', 'AT2G30630' => 'ath', 'AT5G09490' => 'ath', 'AT5G09500' => 'ath', 'AT5G09510' => 'ath', 'AT5G43640' => 'ath', 'AT5G63070' => 'ath', 'ATR0605G315' => 'atr', 'Atru.chr11.175' => 'acertr', 'Atru.chr11.653' => 'acertr', 'Atru.chr3.1616' => 'acertr', 'Atru.chr4.2230' => 'acertr', 'Atru.chr4.2232' => 'acertr', 'Atru.chr5.1598' => 'acertr', 'Atru.chr5.1600' => 'acertr', 'Atru.chr5.2188' => 'acertr', 'AUR62008326' => 'cqu', 'AUR62011922' => 'cqu', 'AUR62011924' => 'cqu', 'AUR62021771' => 'cqu', 'AUR62032237' => 'cqu', 'AUR62032240' => 'cqu', 'BcaB01g05572' => 'bca', 'BcaB02g10337' => 'bca', 'BcaB04g19944' => 'bca', 'BcaB05g21548' => 'bca', 'BcaB05g21549' => 'bca', 'BcaB05g23227' => 'bca', 'BcaB06g26256' => 'bca', 'BcaB06g26257' => 'bca', 'BcaB06g28379' => 'bca', 'BcaC02g11159' => 'bca', 'BcaC03g13258' => 'bca', 'BcaC03g13259' => 'bca', 'BcaC05g24456' => 'bca', 'BcaC05g24457' => 'bca', 'BcaC07g36922' => 'bca', 'BcaC07g36923' => 'bca', 'BcaC07g42050' => 'bca', 'BcaC07g42176' => 'bca', 'BcaC07g42195' => 'bca', 'BcaC07g42196' => 'bca', 'BcaNung06674' => 'bca', 'BolC2t06351H' => 'bol', 'BolC2t06352H' => 'bol', 'BolC3t12993H' => 'bol', 'BolC4t23525H' => 'bol', 'BolC4t27475H' => 'bol', 'BolC5t29025H' => 'bol', 'BolC5t29026H' => 'bol', 'BolC8t46898H' => 'bol', 'BolC8t46899H' => 'bol', 'BolC8t52630H' => 'bol', 'BolC8t52765H' => 'bol', 'BolC9t53824H' => 'bol', 'BraA03t09760Z' => 'bra', 'BraA03t10990Z' => 'bra', 'BraA05t20413Z' => 'bra', 'BraA08t35602Z' => 'bra', 'BraA09t36458Z' => 'bra', 'BraA09t42018Z' => 'bra', 'BraA09t42129Z' => 'bra', 'BraA10t42536Z' => 'bra', 'BraA10t42537Z' => 'bra', 'C01p10690' => 'bna', 'C02p03890' => 'bna', 'C02p03900' => 'bna', 'C03p04620' => 'bna', 'C04p19870' => 'bna', 'C04p59670' => 'bna', 'C05p02460' => 'bna', 'C05p02470' => 'bna', 'C08p00980' => 'bna', 'C08p00990' => 'bna', 'C08p51030' => 'bna', 'C08p52360' => 'bna', 'C09p09120' => 'bna', 'CAN.G19.15' => 'can', 'CAN.G251.10' => 'can', 'CAN.G251.9' => 'can', 'CAN.G398.24' => 'can', 'CAN.G410.32' => 'can', 'CAN.G881.2' => 'can', 'CANSAT01G3025' => 'cansat', 'CANSAT78G1211' => 'cansat', 'CANSAT78G1218' => 'cansat', 'CANSAT78G1521' => 'cansat', 'CANSAT78G1670' => 'cansat', 'CARHR003600' => 'chi', 'CARHR003610' => 'chi', 'CARHR006290' => 'chi', 'CARHR006430' => 'chi', 'CARHR124110' => 'chi', 'CARHR203870' => 'chi', 'CARHR203880' => 'chi', 'CARHR203890' => 'chi', 'CARHR276880' => 'chi', 'Carub.0001s0346' => 'cru', 'Carub.0001s0347' => 'cru', 'Carub.0001s0607' => 'cru', 'Carub.0003s2768' => 'cru', 'Carub.0003s2769' => 'cru', 'Carub.0004s1178' => 'cru', 'Carub.0006s0806' => 'cru', 'Carub.0006s0807' => 'cru', 'Carub.0006s0808' => 'cru', 'Carub.0008s0501' => 'cru', 'Carub.0008s2379' => 'cru', 'Ca_08655_v3' => 'car', 'Ca_08922_v3' => 'car', 'Ca_08923_v3' => 'car', 'Ca_09119_v3' => 'car', 'Ca_09703_v3' => 'car', 'Ca_09705_v3' => 'car', 'Ca_09835_v3' => 'car', 'Ca_26403_v3' => 'car', 'Ca_30719_v3' => 'car', 'CBR_g17958' => 'cbr', 'CBR_g40516' => 'cbr', 'Cc00_g05350' => 'ccan', 'Cc01_g18690' => 'ccan', 'Cc03_g04830' => 'ccan', 'Cc03_g04850' => 'ccan', 'CDE02G4469' => 'cde', 'CDE06G0883' => 'cde', 'CDE06G1295' => 'cde', 'CDE06G1390' => 'cde', 'CDE07G0584' => 'cde', 'CDE07G1084' => 'cde', 'CDE08G1259' => 'cde', 'Cfa002341' => 'cfa', 'Cfa024337' => 'cfa', 'Ciclev10004749m.g' => 'ccl', 'Ciclev10006127m.g' => 'ccl', 'Ciclev10019720m.g' => 'ccl', 'Ciclev10022652m.g' => 'ccl', 'CiPaw.01G190400' => 'cil', 'CiPaw.01G190500' => 'cil', 'CiPaw.02G116400' => 'cil', 'CiPaw.02G116500' => 'cil', 'CiPaw.04G183000' => 'cil', 'CiPaw.04G183300' => 'cil', 'ClCG05G004610' => 'cla', 'ClCG05G004620' => 'cla', 'ClCG06G006730' => 'cla', 'ClCG06G006740' => 'cla', 'ClCG11G003690' => 'cla', 'COL.COLO4_08276' => 'col', 'COL.COLO4_08277' => 'col', 'COL.COLO4_15787' => 'col', 'COL.COLO4_15789' => 'col', 'Cpa.g.c44815' => 'cpa', 'Cpa.g.sc52.144' => 'cpa', 'Cpa.g.sc58.46' => 'cpa', 'Cpa.g.sc58.47' => 'cpa', 'Cre08.g360900' => 'cre', 'CsaV3_2G013030' => 'csa', 'CsaV3_2G013050' => 'csa', 'CsaV3_2G015620' => 'csa', 'CsaV3_3G012590' => 'csa', 'CsaV3_3G012600' => 'csa', 'CSS0001641' => 'camsi', 'CSS0008310' => 'camsi', 'CSS0013011' => 'camsi', 'CSS0017147' => 'camsi', 'CSS0022970' => 'camsi', 'CSS0025655' => 'camsi', 'CSS0028665' => 'camsi', 'CSS0029117' => 'camsi', 'CSS0032024' => 'camsi', 'CSS0039681' => 'camsi', 'CSS0046516' => 'camsi', 'CSS0050307' => 'camsi', 'DCAR_005871' => 'dca', 'DCAR_007342' => 'dca', 'DCAR_024228' => 'dca', 'DCAR_027277' => 'dca', 'DCAR_030718' => 'dca', 'Dinv20287' => 'din', 'Dinv22461' => 'din', 'Dinv22464' => 'din', 'Dinv29912' => 'din', 'Dinv29913' => 'din', 'Dinv34580' => 'din', 'Dinv34582' => 'din', 'Dinv44632' => 'din', 'Duzib052G0266' => 'dzi', 'Duzib133G0907' => 'dzi', 'Duzib133G1034' => 'dzi', 'Duzib138G0207' => 'dzi', 'Duzib138G0491' => 'dzi', 'Duzib151G0812' => 'dzi', 'Duzib151G1166' => 'dzi', 'Duzib168G0192' => 'dzi', 'Duzib211G0077' => 'dzi', 'Duzib212G0429' => 'dzi', 'Duzib212G0472' => 'dzi', 'ECA233G2617' => 'eca', 'ECA236G4188' => 'eca', 'ECA240G0936' => 'eca', 'ECA240G1129' => 'eca', 'ECA247G0623' => 'eca', 'EL10Ac5g10451' => 'bvu', 'EL10Ac5g10453' => 'bvu', 'EL10Ac5g10894' => 'bvu', 'Eucgr.H00192' => 'egr', 'Eucgr.H00193' => 'egr', 'Eucgr.H00194' => 'egr', 'Eucgr.J01562' => 'egr', 'Eucgr.K03301' => 'egr', 'FAN02G0632' => 'fan', 'FAN05G5378' => 'fan', 'FAN09G3247' => 'fan', 'FAN12G0435' => 'fan', 'FAN12G2426' => 'fan', 'FAN14G1707' => 'fan', 'FAN14G4725' => 'fan', 'FAN15G2071' => 'fan', 'FAN17G3065' => 'fan', 'FAN19G1376' => 'fan', 'FAN20G0354' => 'fan', 'FAN20G2429' => 'fan', 'FAN20G2658' => 'fan', 'FAN24G2343' => 'fan', 'FAN27G2362' => 'fan', 'FAN28G1765' => 'fan', 'FvH4_1g16020' => 'fve', 'FvH4_2g04890' => 'fve', 'FvH4_2g22270' => 'fve', 'FvH4_4g02630' => 'fve', 'FvH4_4g02640' => 'fve', 'FvH4_6g02650' => 'fve', 'Glyma.02G140600' => 'gma', 'Glyma.03G159900' => 'gma', 'Glyma.05G234800' => 'gma', 'Glyma.07G269600' => 'gma', 'Glyma.08G042300' => 'gma', 'Glyma.10G033500' => 'gma', 'Glyma.10G185200' => 'gma', 'Glyma.17G004300' => 'gma', 'Glyma.19G161900' => 'gma', 'Glyma.20G205100' => 'gma', 'Glyma.20G205200' => 'gma', 'Gohir.A01G139101' => 'ghi', 'Gohir.A02G035600' => 'ghi', 'Gohir.A02G117901' => 'ghi', 'Gohir.A07G210100' => 'ghi', 'Gohir.A07G210200' => 'ghi', 'Gohir.A08G061100' => 'ghi', 'Gohir.A09G223000' => 'ghi', 'Gohir.A09G223100' => 'ghi', 'Gohir.A10G113900' => 'ghi', 'Gohir.A10G114000' => 'ghi', 'Gohir.D02G042300' => 'ghi', 'Gohir.D07G216100' => 'ghi', 'Gohir.D07G216200' => 'ghi', 'Gohir.D08G070400' => 'ghi', 'Gohir.D09G225000' => 'ghi', 'Gohir.D09G225100' => 'ghi', 'Gohir.D10G152300' => 'ghi', 'Gohir.D10G153200' => 'ghi', 'Gohir.D11G133701' => 'ghi', 'Gorai.004G074100' => 'gra', 'Gorai.005G046800' => 'gra', 'Gorai.006G246500' => 'gra', 'Gorai.006G246600' => 'gra', 'Gorai.007G142900' => 'gra', 'Gorai.011G171000' => 'gra', 'Gorai.011G171100' => 'gra', 'Gorai.013G104300' => 'gra', 'Gorai.013G104400' => 'gra', 'GSVIVG01000754001' => 'vvi', 'GSVIVG01000756001' => 'vvi', 'GSVIVG01010903001' => 'vvi', 'GSVIVG01017623001' => 'vvi', 'GSVIVG01018113001' => 'vvi', 'GSVIVG01018116001' => 'vvi', 'GSVIVG01018118001' => 'vvi', 'HanXRQChr03g0076211' => 'han', 'HanXRQChr03g0092431' => 'han', 'HanXRQChr03g0092441' => 'han', 'HanXRQChr03g0092591' => 'han', 'HanXRQChr03g0092671' => 'han', 'HanXRQChr03g0092681' => 'han', 'HanXRQChr03g0092691' => 'han', 'HanXRQChr03g0092701' => 'han', 'HanXRQChr03g0092721' => 'han', 'HanXRQChr03g0092731' => 'han', 'HanXRQChr04g0113681' => 'han', 'HanXRQChr10g0281371' => 'han', 'HanXRQChr11g0337141' => 'han', 'HanXRQChr13g0424521' => 'han', 'HanXRQChr13g0424531' => 'han', 'HanXRQChr13g0424541' => 'han', 'HanXRQChr16g0498221' => 'han', 'Haze_04377' => 'cav', 'Haze_11298' => 'cav', 'Haze_24547' => 'cav', 'Haze_24550' => 'cav', 'Haze_26587' => 'cav', 'Hma1.2p1_0650F.1_g195410' => 'hma', 'Hma1.2p1_0893F.1_g233470' => 'hma', 'HPP92_006508' => 'vpl', 'HPP92_024780' => 'vpl', 'Hund02688' => 'sun', 'Hund09380' => 'sun', 'Hund09381' => 'sun', 'Hund09832' => 'sun', 'Hund09833' => 'sun', 'Hund11351' => 'sun', 'Hund11513' => 'sun', 'Lalb_Chr06g0162591' => 'lal', 'Lalb_Chr06g0162601' => 'lal', 'Lalb_Chr06g0169321' => 'lal', 'Lalb_Chr09g0330951' => 'lal', 'Lalb_Chr16g0387631' => 'lal', 'Lalb_Chr21g0306241' => 'lal', 'Lalb_Chr25g0290051' => 'lal', 'Lalb_Chr25g0290061' => 'lal', 'Lalb_Chr25g0290071' => 'lal', 'Lj1g0003876' => 'lja', 'Lj1P1207T36' => 'lonja', 'Lj2C1156G12' => 'lonja', 'Lj3A793G39' => 'lonja', 'Lj3C580G2' => 'lonja', 'Lj3C780G2' => 'lonja', 'Lj3C780T4' => 'lonja', 'Lj3C793G9' => 'lonja', 'Lj4g0012960' => 'lja', 'Lj5g0021252' => 'lja', 'Lj5g0021484' => 'lja', 'Lj5g0024528' => 'lja', 'Lj6A399T12' => 'lonja', 'Lj6A656G65' => 'lonja', 'Lsat_1_v5_gn_3_125500' => 'lsa', 'Lsat_1_v5_gn_3_125540' => 'lsa', 'Lsat_1_v5_gn_5_72701' => 'lsa', 'Lsat_1_v5_gn_8_91560' => 'lsa', 'Lsat_1_v5_gn_9_9640' => 'lsa', 'Manes.01G200600' => 'mes', 'Manes.01G200700' => 'mes', 'Manes.03G168900' => 'mes', 'Manes.03G169000' => 'mes', 'Manes.05G085801' => 'mes', 'Manes.05G086200' => 'mes', 'Manes.15G036700' => 'mes', 'Manes.15G036900' => 'mes', 'Mapoly0004s0172' => 'mpo', 'Mapoly0023s0001' => 'mpo', 'Mapoly0142s0012' => 'mpo', 'MBI01_g32854_MAGBIO' => 'mbi', 'MBI11_g24427_MAGBIO' => 'mbi', 'MBI11_g47319_MAGBIO' => 'mbi', 'MCO01G433' => 'mco', 'MD00G1187800' => 'mdo', 'MD04G1226500' => 'mdo', 'MD05G1203900' => 'mdo', 'MD10G1191100' => 'mdo', 'MD12G1243500' => 'mdo', 'MD13G1207000' => 'mdo', 'MD13G1207100' => 'mdo', 'MD16G1208600' => 'mdo', 'Medtr1g050352' => 'mtr', 'Medtr1g070385' => 'mtr', 'Medtr1g070450' => 'mtr', 'Medtr1g075200' => 'mtr', 'Medtr1g075250' => 'mtr', 'Medtr1g075260' => 'mtr', 'Medtr1g475250' => 'mtr', 'Medtr4g075450' => 'mtr', 'Medtr7g096300' => 'mtr', 'Medtr8g105110' => 'mtr', 'MELO3C006470.2' => 'cme', 'MELO3C006471.2' => 'cme', 'MELO3C020772.2' => 'cme', 'MELO3C026780.2' => 'cme', 'MELO3C026781.2' => 'cme', 'Migut.D00390' => 'egut', 'Migut.G00435' => 'egut', 'Migut.G00436' => 'egut', 'Migut.G00718' => 'egut', 'MSTRG.21891' => 'ama', 'MSTRG.26910' => 'ama', 'MSTRG.4099' => 'ama', 'MSTRG.9925' => 'ama', 'Nitab4.5_0000165g0010' => 'nta', 'Nitab4.5_0000209g0180' => 'nta', 'Nitab4.5_0000244g0440' => 'nta', 'Nitab4.5_0000525g0220' => 'nta', 'Nitab4.5_0001597g0020' => 'nta', 'Nitab4.5_0001878g0040' => 'nta', 'Nitab4.5_0001878g0060' => 'nta', 'Nitab4.5_0002838g0100' => 'nta', 'Nitab4.5_0002838g0120' => 'nta', 'Nitab4.5_0004798g0030' => 'nta', 'Nitab4.5_0005420g0010' => 'nta', 'Nitab4.5_0005507g0010' => 'nta', 'Nitab4.5_0005574g0020' => 'nta', 'Nitab4.5_0005838g0010' => 'nta', 'Nitab4.5_0010580g0020' => 'nta', 'Nn1g02599' => 'nnu', 'Nn1g02608' => 'nnu', 'Nn3g17742' => 'nnu', 'Nn3g19534' => 'nnu', 'Nn3g19535' => 'nnu', 'Oeu008790.1' => 'oeu', 'Oeu008792.1' => 'oeu', 'Oeu032590.1' => 'oeu', 'Oeu035349.1' => 'oeu', 'Oeu049791.1' => 'oeu', 'Os01g0774500' => 'osa', 'Os03g0628800' => 'osa', 'Os03g0798600' => 'osa', 'Os05g0508800' => 'osa', 'Peaxi162Scf00036g02018' => 'pax', 'Peaxi162Scf00578g00032' => 'pax', 'Peaxi162Scf00578g00317' => 'pax', 'Peaxi162Scf00785g00114' => 'pax', 'Peaxi162Scf00813g00119' => 'pax', 'Peaxi162Scf00906g00227' => 'pax', 'PGR004G0875' => 'pgr', 'PGR004G2424' => 'pgr', 'PGR031G1239' => 'pgr', 'PGR031G2474' => 'pgr', 'PGR044G0423' => 'pgr', 'PGSC0003DMG400001128' => 'stu', 'PGSC0003DMG400007336' => 'stu', 'PGSC0003DMG400016318' => 'stu', 'PGSC0003DMG400016319' => 'stu', 'PGSC0003DMG400018074' => 'stu', 'Phvul.001G157700' => 'pvu', 'Phvul.002G148550' => 'pvu', 'Phvul.002G320200' => 'pvu', 'Phvul.003G089200' => 'pvu', 'Phvul.007G126000' => 'pvu', 'Phvul.007G126100' => 'pvu', 'Phvul.007G178000' => 'pvu', 'Phvul.007G178200' => 'pvu', 'Potri.002G043000' => 'ptr', 'Potri.002G043200' => 'ptr', 'Potri.003G123750' => 'ptr', 'Potri.005G055401' => 'ptr', 'Potri.005G219700' => 'ptr', 'Potri.005G220000' => 'ptr', 'Potri.008G161901' => 'ptr', 'Potri.008G162000' => 'ptr', 'Potri.008G162400' => 'ptr', 'Potri.010G076900' => 'ptr', 'Pp3c12_9180' => 'ppa', 'Pp3c13_19770' => 'ppa', 'Pp3c14_22950' => 'ppa', 'Pp3c16_12160' => 'ppa', 'Pp3c27_7820' => 'ppa', 'Pp3c2_3490' => 'ppa', 'Pp3c3_23700' => 'ppa', 'Pp3c3_36520' => 'ppa', 'Pp3c4_15250' => 'ppa', 'PRCOL_00007002' => 'pco', 'Prupe.1G030600' => 'ppe', 'Prupe.1G030700' => 'ppe', 'Prupe.6G345200' => 'ppe', 'Prupe.8G230300' => 'ppe', 'Prupe.8G230500' => 'ppe', 'Psat3g059600' => 'psa', 'Psat5g200920' => 'psa', 'Psat6g056440' => 'psa', 'Psat6g057360' => 'psa', 'Psat6g134120' => 'psa', 'Psat6g134160' => 'psa', 'Psat7g008640' => 'psa', 'Psat7g185240' => 'psa', 'PSO017G1330' => 'pso', 'PSO063G6097' => 'pso', 'PSO170G0835' => 'pso', 'PSO170G2499' => 'pso', 'PSO210G5058' => 'pso', 'PSO210G6154' => 'pso', 'PSO585G0031' => 'pso', 'PSO832G0264' => 'pso', 'PSO832G4288' => 'pso', 'QL03p027355' => 'qlo', 'QL03p027430' => 'qlo', 'QL04p081380' => 'qlo', 'QL06p015642' => 'qlo', 'QL06p015650' => 'qlo', 'QL06p015686' => 'qlo', 'QL12p042927' => 'qlo', 'QL93p1863_0035' => 'qlo', 'RcHm_v2.0_Chr3g0450581' => 'rch', 'RcHm_v2.0_Chr4g0390371' => 'rch', 'RcHm_v2.0_Chr4g0390381' => 'rch', 'RcHm_v2.0_Chr4g0390491' => 'rch', 'RcHm_v2.0_Chr4g0390501' => 'rch', 'RcHm_v2.0_Chr6g0289231' => 'rch', 'Rhsim04G0190400' => 'rsi', 'Rhsim04G0190500' => 'rsi', 'Rhsim04G0190600' => 'rsi', 'Rhsim13G0031400' => 'rsi', 'Rhsim13G0165600' => 'rsi', 'RhsimUnG0114600' => 'rsi', 'RhsimUnG0114700' => 'rsi', 'Sabra02G0034800' => 'sbr', 'Sabra02G0035100' => 'sbr', 'Sabra05G0168600' => 'sbr', 'Sabra05G0168800' => 'sbr', 'Sabra08G0123700' => 'sbr', 'Sabra10G0031900' => 'sbr', 'Sabra13G0039000' => 'sbr', 'SalBow2G0782' => 'sbo', 'SalBow2G1403' => 'sbo', 'SalBow4G0074' => 'sbo', 'SalBow4G2635' => 'sbo', 'SalBow5G3010' => 'sbo', 'Sc05g0000870' => 'sci', 'Sc05g0000890' => 'sci', 'Sc13g0005000' => 'sci', 'Sc13g0005030' => 'sci', 'Sc19g0003790' => 'sci', 'Sc19g0003800' => 'sci', 'Sed0003467' => 'sed', 'Sed0009355' => 'sed', 'Sed0009894' => 'sed', 'Sed0011972' => 'sed', 'Sed0021483' => 'sed', 'Sed0021750' => 'sed', 'Sed0026279' => 'sed', 'SEGI_05312' => 'sgi', 'SEGI_10112' => 'sgi', 'SEGI_15835' => 'sgi', 'SEGI_30386' => 'sgi', 'SEGI_34122' => 'sgi', 'SEGI_35063' => 'sgi', 'SGA_v2.0_scaffold101G29794' => 'sas', 'SGA_v2.0_scaffold1G00573' => 'sas', 'SGA_v2.0_scaffold79G25637' => 'sas', 'SGA_v2.0_scaffold88G27283' => 'sas', 'SGA_v2.0_scaffold88G27285' => 'sas', 'SGA_v2.0_scaffold88G27331' => 'sas', 'SHI09937' => 'shi', 'SMO119G0302' => 'smo', 'SMO137G0231' => 'smo', 'SMO367G1151' => 'smo', 'Solyc02g082000.3' => 'sly', 'Solyc06g031670.3' => 'sly', 'Solyc06g053810.3' => 'sly', 'Solyc07g025457.1' => 'sly', 'Solyc08g059740.1' => 'sly', 'Solyc08g059750.3' => 'sly', 'Solyc09g083370.3' => 'sly', 'Solyc12g038950.3' => 'sly', 'Sopen02g026630' => 'spe', 'Sopen06g018930' => 'spe', 'Sopen06g018940' => 'spe', 'Sopen08g009460' => 'spe', 'Sopen09g032290' => 'spe', 'Sp1g03080' => 'spa', 'Sp1g03090' => 'spa', 'Sp1g05480' => 'spa', 'Sp2g07860' => 'spa', 'Sp2g08430' => 'spa', 'Sp2g08440' => 'spa', 'Sp2g26200' => 'spa', 'Sp4g13170' => 'spa', 'Sp6g33840' => 'spa', 'SpUn1204_0010' => 'spa', 'TAR365G0908' => 'tar', 'TAR381G1270' => 'tar', 'TAR381G1651' => 'tar', 'TAR625G1131' => 'tar', 'TAR633G0962' => 'tar', 'TAR633G1729' => 'tar', 'TAR633G1864' => 'tar', 'TAR636G0221' => 'tar', 'TAR636G0314' => 'tar', 'TAR636G3202' => 'tar', 'THA.LOC104800805' => 'tha', 'THA.LOC104801096' => 'tha', 'THA.LOC104801555' => 'tha', 'THA.LOC104808491' => 'tha', 'THA.LOC104808595' => 'tha', 'THA.LOC104815985' => 'tha', 'THA.LOC104822250' => 'tha', 'THA.LOC104826071' => 'tha', 'Thecc.01G265200' => 'tca', 'Thecc.01G265300' => 'tca', 'Thecc.01G265700' => 'tca', 'Thecc.03G109100' => 'tca', 'Thecc.04G245900' => 'tca', 'Thecc.04G246000' => 'tca', 'Thhalv10003334m.g' => 'esa', 'Thhalv10005508m.g' => 'esa', 'Thhalv10005643m.g' => 'esa', 'Thhalv10007316m.g' => 'esa', 'Thhalv10009006m.g' => 'esa', 'Thhalv10009309m.g' => 'esa', 'Thhalv10014917m.g' => 'esa', 'Thhalv10014919m.g' => 'esa', 'Thhalv10015393m.g' => 'esa', 'Thhalv10016515m.g' => 'esa', 'Thhalv10029242m.g' => 'esa', 'TPR.G16654' => 'tpr', 'TPR.G20589' => 'tpr', 'TPR.G23029' => 'tpr', 'TPR.G27731' => 'tpr', 'TPR.G28889' => 'tpr', 'TPR.G28899' => 'tpr', 'TPR.G30846' => 'tpr', 'TPR.G5452' => 'tpr', 'TPR.G5713' => 'tpr', 'TPR.G9046' => 'tpr', 'TPR.G9061' => 'tpr', 'TWI09G1075' => 'twi', 'TWI12G0806' => 'twi', 'TWI18G0108' => 'twi', 'TWI53G1361' => 'twi', 'TWI73G0185' => 'twi', 'TWI73G0427' => 'twi', 'unitig_37.g12001' => 'ugi', 'unitig_747.g21660' => 'ugi', 'unitig_748.g7232' => 'ugi', 'unitig_748.g7315' => 'ugi', 'unitig_85.g27262' => 'ugi', 'unitig_92.g28220' => 'ugi', 'vmacro02632' => 'vma', 'vmacro08410' => 'vma', 'vmacro08411' => 'vma', 'vmacro15407' => 'vma', 'VMungo0251G3619' => 'vmu', 'VMungo0720G1204' => 'vmu', 'VMungo0720G1918' => 'vmu', 'VMungo0720G2387' => 'vmu', 'VMungo0720G2961' => 'vmu', 'VMungo1215G2154' => 'vmu', 'VMungo1383G2411' => 'vmu', 'Zm00001eb051130' => 'zma', 'Zm00001eb116830' => 'zma', 'Zm00001eb116850' => 'zma', 'Zm00001eb151740' => 'zma', 'Zm00001eb292360' => 'zma', 'Zm00001eb301640' => 'zma' ) $gf_id = 'HOM05D000856' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000856' ) $data_identifier = 'HOM05D000856' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 13, 'ath' => (int) 10, 'atr' => (int) 1, 'acertr' => (int) 8, 'cqu' => (int) 6, 'bca' => (int) 21, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 11, 'car' => (int) 9, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 8, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 5, 'fan' => (int) 16, 'fve' => (int) 6, 'gma' => (int) 11, 'ghi' => (int) 19, 'gra' => (int) 9, 'vvi' => (int) 7, 'han' => (int) 17, 'cav' => (int) 5, 'hma' => (int) 2, 'vpl' => (int) 2, 'sun' => (int) 7, 'lal' => (int) 9, 'lja' => (int) 5, 'lonja' => (int) 9, 'lsa' => (int) 5, 'mes' => (int) 8, 'mpo' => (int) 3, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 10, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 15, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 9, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 9, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 6, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 5, 'spa' => (int) 10, 'tar' => (int) 10, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 11, 'tpr' => (int) 11, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 4, 'vmu' => (int) 7, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb301640' $species_info = array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ) $local_species = 'cfa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000856', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p00010' => 'bna', 'A03p04160' => 'bna', 'A03p17160' => 'bna', 'A04p23370' => 'bna', 'A05p14860' => 'bna', 'A08p37020' => 'bna', 'A09p08050' => 'bna', 'A09p66800' => 'bna', 'A09p67940' => 'bna', 'A10p02680' => 'bna', 'A10p05320' => 'bna', 'Aa31LG1G20560' => 'aar', 'Aa31LG1G20610' => 'aar', 'Aa31LG1G7810' => 'aar', 'Aa31LG5G3590' => 'aar', 'Aa31LG5G6140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3819' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4683' => 'aag', 'Actinidia04480' => 'ach', 'Actinidia05466' => 'ach', 'Actinidia08445' => 'ach', 'Actinidia21170' => 'ach', 'Actinidia24812' => 'ach', 'Actinidia24951' => 'ach', 'Actinidia40088' => 'ach', 'Ah.02g111660' => 'amhyb', 'Ah.11g048900' => 'amhyb', 'Ah.11g049910' => 'amhyb', 'AL1G13870' => 'aly', 'AL1G13880' => 'aly', 'AL1G16760' => 'aly', 'AL390U10020' => 'aly', 'AL4G25520' => 'aly', 'AL6G19890' => 'aly', 'AL6G19900' => 'aly', 'AL6G19910' => 'aly', 'AL8G40100' => 'aly', 'Aqoxy2G03562' => 'aox', 'Aqoxy5G00316' => 'aox', 'Aqoxy5G00926' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1628KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1H403S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2FU6SJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.882I6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8YRY2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YN1SN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AF70II' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZA8L1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F916KL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHRD8H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KTZ8QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S22EMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8M29T' => 'arhy', 'AT1G04270' => 'ath', 'AT1G04280' => 'ath', 'AT1G06750' => 'ath', 'AT1G33850' => 'ath', 'AT2G30630' => 'ath', 'AT5G09490' => 'ath', 'AT5G09500' => 'ath', 'AT5G09510' => 'ath', 'AT5G43640' => 'ath', 'AT5G63070' => 'ath', 'ATR0605G315' => 'atr', 'Atru.chr11.175' => 'acertr', 'Atru.chr11.653' => 'acertr', 'Atru.chr3.1616' => 'acertr', 'Atru.chr4.2230' => 'acertr', 'Atru.chr4.2232' => 'acertr', 'Atru.chr5.1598' => 'acertr', 'Atru.chr5.1600' => 'acertr', 'Atru.chr5.2188' => 'acertr', 'AUR62008326' => 'cqu', 'AUR62011922' => 'cqu', 'AUR62011924' => 'cqu', 'AUR62021771' => 'cqu', 'AUR62032237' => 'cqu', 'AUR62032240' => 'cqu', 'BcaB01g05572' => 'bca', 'BcaB02g10337' => 'bca', 'BcaB04g19944' => 'bca', 'BcaB05g21548' => 'bca', 'BcaB05g21549' => 'bca', 'BcaB05g23227' => 'bca', 'BcaB06g26256' => 'bca', 'BcaB06g26257' => 'bca', 'BcaB06g28379' => 'bca', 'BcaC02g11159' => 'bca', 'BcaC03g13258' => 'bca', 'BcaC03g13259' => 'bca', 'BcaC05g24456' => 'bca', 'BcaC05g24457' => 'bca', 'BcaC07g36922' => 'bca', 'BcaC07g36923' => 'bca', 'BcaC07g42050' => 'bca', 'BcaC07g42176' => 'bca', 'BcaC07g42195' => 'bca', 'BcaC07g42196' => 'bca', 'BcaNung06674' => 'bca', 'BolC2t06351H' => 'bol', 'BolC2t06352H' => 'bol', 'BolC3t12993H' => 'bol', 'BolC4t23525H' => 'bol', 'BolC4t27475H' => 'bol', 'BolC5t29025H' => 'bol', 'BolC5t29026H' => 'bol', 'BolC8t46898H' => 'bol', 'BolC8t46899H' => 'bol', 'BolC8t52630H' => 'bol', 'BolC8t52765H' => 'bol', 'BolC9t53824H' => 'bol', 'BraA03t09760Z' => 'bra', 'BraA03t10990Z' => 'bra', 'BraA05t20413Z' => 'bra', 'BraA08t35602Z' => 'bra', 'BraA09t36458Z' => 'bra', 'BraA09t42018Z' => 'bra', 'BraA09t42129Z' => 'bra', 'BraA10t42536Z' => 'bra', 'BraA10t42537Z' => 'bra', 'C01p10690' => 'bna', 'C02p03890' => 'bna', 'C02p03900' => 'bna', 'C03p04620' => 'bna', 'C04p19870' => 'bna', 'C04p59670' => 'bna', 'C05p02460' => 'bna', 'C05p02470' => 'bna', 'C08p00980' => 'bna', 'C08p00990' => 'bna', 'C08p51030' => 'bna', 'C08p52360' => 'bna', 'C09p09120' => 'bna', 'CAN.G19.15' => 'can', 'CAN.G251.10' => 'can', 'CAN.G251.9' => 'can', 'CAN.G398.24' => 'can', 'CAN.G410.32' => 'can', 'CAN.G881.2' => 'can', 'CANSAT01G3025' => 'cansat', 'CANSAT78G1211' => 'cansat', 'CANSAT78G1218' => 'cansat', 'CANSAT78G1521' => 'cansat', 'CANSAT78G1670' => 'cansat', 'CARHR003600' => 'chi', 'CARHR003610' => 'chi', 'CARHR006290' => 'chi', 'CARHR006430' => 'chi', 'CARHR124110' => 'chi', 'CARHR203870' => 'chi', 'CARHR203880' => 'chi', 'CARHR203890' => 'chi', 'CARHR276880' => 'chi', 'Carub.0001s0346' => 'cru', 'Carub.0001s0347' => 'cru', 'Carub.0001s0607' => 'cru', 'Carub.0003s2768' => 'cru', 'Carub.0003s2769' => 'cru', 'Carub.0004s1178' => 'cru', 'Carub.0006s0806' => 'cru', 'Carub.0006s0807' => 'cru', 'Carub.0006s0808' => 'cru', 'Carub.0008s0501' => 'cru', 'Carub.0008s2379' => 'cru', 'Ca_08655_v3' => 'car', 'Ca_08922_v3' => 'car', 'Ca_08923_v3' => 'car', 'Ca_09119_v3' => 'car', 'Ca_09703_v3' => 'car', 'Ca_09705_v3' => 'car', 'Ca_09835_v3' => 'car', 'Ca_26403_v3' => 'car', 'Ca_30719_v3' => 'car', 'CBR_g17958' => 'cbr', 'CBR_g40516' => 'cbr', 'Cc00_g05350' => 'ccan', 'Cc01_g18690' => 'ccan', 'Cc03_g04830' => 'ccan', 'Cc03_g04850' => 'ccan', 'CDE02G4469' => 'cde', 'CDE06G0883' => 'cde', 'CDE06G1295' => 'cde', 'CDE06G1390' => 'cde', 'CDE07G0584' => 'cde', 'CDE07G1084' => 'cde', 'CDE08G1259' => 'cde', 'Cfa002341' => 'cfa', 'Cfa024337' => 'cfa', 'Ciclev10004749m.g' => 'ccl', 'Ciclev10006127m.g' => 'ccl', 'Ciclev10019720m.g' => 'ccl', 'Ciclev10022652m.g' => 'ccl', 'CiPaw.01G190400' => 'cil', 'CiPaw.01G190500' => 'cil', 'CiPaw.02G116400' => 'cil', 'CiPaw.02G116500' => 'cil', 'CiPaw.04G183000' => 'cil', 'CiPaw.04G183300' => 'cil', 'ClCG05G004610' => 'cla', 'ClCG05G004620' => 'cla', 'ClCG06G006730' => 'cla', 'ClCG06G006740' => 'cla', 'ClCG11G003690' => 'cla', 'COL.COLO4_08276' => 'col', 'COL.COLO4_08277' => 'col', 'COL.COLO4_15787' => 'col', 'COL.COLO4_15789' => 'col', 'Cpa.g.c44815' => 'cpa', 'Cpa.g.sc52.144' => 'cpa', 'Cpa.g.sc58.46' => 'cpa', 'Cpa.g.sc58.47' => 'cpa', 'Cre08.g360900' => 'cre', 'CsaV3_2G013030' => 'csa', 'CsaV3_2G013050' => 'csa', 'CsaV3_2G015620' => 'csa', 'CsaV3_3G012590' => 'csa', 'CsaV3_3G012600' => 'csa', 'CSS0001641' => 'camsi', 'CSS0008310' => 'camsi', 'CSS0013011' => 'camsi', 'CSS0017147' => 'camsi', 'CSS0022970' => 'camsi', 'CSS0025655' => 'camsi', 'CSS0028665' => 'camsi', 'CSS0029117' => 'camsi', 'CSS0032024' => 'camsi', 'CSS0039681' => 'camsi', 'CSS0046516' => 'camsi', 'CSS0050307' => 'camsi', 'DCAR_005871' => 'dca', 'DCAR_007342' => 'dca', 'DCAR_024228' => 'dca', 'DCAR_027277' => 'dca', 'DCAR_030718' => 'dca', 'Dinv20287' => 'din', 'Dinv22461' => 'din', 'Dinv22464' => 'din', 'Dinv29912' => 'din', 'Dinv29913' => 'din', 'Dinv34580' => 'din', 'Dinv34582' => 'din', 'Dinv44632' => 'din', 'Duzib052G0266' => 'dzi', 'Duzib133G0907' => 'dzi', 'Duzib133G1034' => 'dzi', 'Duzib138G0207' => 'dzi', 'Duzib138G0491' => 'dzi', 'Duzib151G0812' => 'dzi', 'Duzib151G1166' => 'dzi', 'Duzib168G0192' => 'dzi', 'Duzib211G0077' => 'dzi', 'Duzib212G0429' => 'dzi', 'Duzib212G0472' => 'dzi', 'ECA233G2617' => 'eca', 'ECA236G4188' => 'eca', 'ECA240G0936' => 'eca', 'ECA240G1129' => 'eca', 'ECA247G0623' => 'eca', 'EL10Ac5g10451' => 'bvu', 'EL10Ac5g10453' => 'bvu', 'EL10Ac5g10894' => 'bvu', 'Eucgr.H00192' => 'egr', 'Eucgr.H00193' => 'egr', 'Eucgr.H00194' => 'egr', 'Eucgr.J01562' => 'egr', 'Eucgr.K03301' => 'egr', 'FAN02G0632' => 'fan', 'FAN05G5378' => 'fan', 'FAN09G3247' => 'fan', 'FAN12G0435' => 'fan', 'FAN12G2426' => 'fan', 'FAN14G1707' => 'fan', 'FAN14G4725' => 'fan', 'FAN15G2071' => 'fan', 'FAN17G3065' => 'fan', 'FAN19G1376' => 'fan', 'FAN20G0354' => 'fan', 'FAN20G2429' => 'fan', 'FAN20G2658' => 'fan', 'FAN24G2343' => 'fan', 'FAN27G2362' => 'fan', 'FAN28G1765' => 'fan', 'FvH4_1g16020' => 'fve', 'FvH4_2g04890' => 'fve', 'FvH4_2g22270' => 'fve', 'FvH4_4g02630' => 'fve', 'FvH4_4g02640' => 'fve', 'FvH4_6g02650' => 'fve', 'Glyma.02G140600' => 'gma', 'Glyma.03G159900' => 'gma', 'Glyma.05G234800' => 'gma', 'Glyma.07G269600' => 'gma', 'Glyma.08G042300' => 'gma', 'Glyma.10G033500' => 'gma', 'Glyma.10G185200' => 'gma', 'Glyma.17G004300' => 'gma', 'Glyma.19G161900' => 'gma', 'Glyma.20G205100' => 'gma', 'Glyma.20G205200' => 'gma', 'Gohir.A01G139101' => 'ghi', 'Gohir.A02G035600' => 'ghi', 'Gohir.A02G117901' => 'ghi', 'Gohir.A07G210100' => 'ghi', 'Gohir.A07G210200' => 'ghi', 'Gohir.A08G061100' => 'ghi', 'Gohir.A09G223000' => 'ghi', 'Gohir.A09G223100' => 'ghi', 'Gohir.A10G113900' => 'ghi', 'Gohir.A10G114000' => 'ghi', 'Gohir.D02G042300' => 'ghi', 'Gohir.D07G216100' => 'ghi', 'Gohir.D07G216200' => 'ghi', 'Gohir.D08G070400' => 'ghi', 'Gohir.D09G225000' => 'ghi', 'Gohir.D09G225100' => 'ghi', 'Gohir.D10G152300' => 'ghi', 'Gohir.D10G153200' => 'ghi', 'Gohir.D11G133701' => 'ghi', 'Gorai.004G074100' => 'gra', 'Gorai.005G046800' => 'gra', 'Gorai.006G246500' => 'gra', 'Gorai.006G246600' => 'gra', 'Gorai.007G142900' => 'gra', 'Gorai.011G171000' => 'gra', 'Gorai.011G171100' => 'gra', 'Gorai.013G104300' => 'gra', 'Gorai.013G104400' => 'gra', 'GSVIVG01000754001' => 'vvi', 'GSVIVG01000756001' => 'vvi', 'GSVIVG01010903001' => 'vvi', 'GSVIVG01017623001' => 'vvi', 'GSVIVG01018113001' => 'vvi', 'GSVIVG01018116001' => 'vvi', 'GSVIVG01018118001' => 'vvi', 'HanXRQChr03g0076211' => 'han', 'HanXRQChr03g0092431' => 'han', 'HanXRQChr03g0092441' => 'han', 'HanXRQChr03g0092591' => 'han', 'HanXRQChr03g0092671' => 'han', 'HanXRQChr03g0092681' => 'han', 'HanXRQChr03g0092691' => 'han', 'HanXRQChr03g0092701' => 'han', 'HanXRQChr03g0092721' => 'han', 'HanXRQChr03g0092731' => 'han', 'HanXRQChr04g0113681' => 'han', 'HanXRQChr10g0281371' => 'han', 'HanXRQChr11g0337141' => 'han', 'HanXRQChr13g0424521' => 'han', 'HanXRQChr13g0424531' => 'han', 'HanXRQChr13g0424541' => 'han', 'HanXRQChr16g0498221' => 'han', 'Haze_04377' => 'cav', 'Haze_11298' => 'cav', 'Haze_24547' => 'cav', 'Haze_24550' => 'cav', 'Haze_26587' => 'cav', 'Hma1.2p1_0650F.1_g195410' => 'hma', 'Hma1.2p1_0893F.1_g233470' => 'hma', 'HPP92_006508' => 'vpl', 'HPP92_024780' => 'vpl', 'Hund02688' => 'sun', 'Hund09380' => 'sun', 'Hund09381' => 'sun', 'Hund09832' => 'sun', 'Hund09833' => 'sun', 'Hund11351' => 'sun', 'Hund11513' => 'sun', 'Lalb_Chr06g0162591' => 'lal', 'Lalb_Chr06g0162601' => 'lal', 'Lalb_Chr06g0169321' => 'lal', 'Lalb_Chr09g0330951' => 'lal', 'Lalb_Chr16g0387631' => 'lal', 'Lalb_Chr21g0306241' => 'lal', 'Lalb_Chr25g0290051' => 'lal', 'Lalb_Chr25g0290061' => 'lal', 'Lalb_Chr25g0290071' => 'lal', 'Lj1g0003876' => 'lja', 'Lj1P1207T36' => 'lonja', 'Lj2C1156G12' => 'lonja', 'Lj3A793G39' => 'lonja', 'Lj3C580G2' => 'lonja', 'Lj3C780G2' => 'lonja', 'Lj3C780T4' => 'lonja', 'Lj3C793G9' => 'lonja', 'Lj4g0012960' => 'lja', 'Lj5g0021252' => 'lja', 'Lj5g0021484' => 'lja', 'Lj5g0024528' => 'lja', 'Lj6A399T12' => 'lonja', 'Lj6A656G65' => 'lonja', 'Lsat_1_v5_gn_3_125500' => 'lsa', 'Lsat_1_v5_gn_3_125540' => 'lsa', 'Lsat_1_v5_gn_5_72701' => 'lsa', 'Lsat_1_v5_gn_8_91560' => 'lsa', 'Lsat_1_v5_gn_9_9640' => 'lsa', 'Manes.01G200600' => 'mes', 'Manes.01G200700' => 'mes', 'Manes.03G168900' => 'mes', 'Manes.03G169000' => 'mes', 'Manes.05G085801' => 'mes', 'Manes.05G086200' => 'mes', 'Manes.15G036700' => 'mes', 'Manes.15G036900' => 'mes', 'Mapoly0004s0172' => 'mpo', 'Mapoly0023s0001' => 'mpo', 'Mapoly0142s0012' => 'mpo', 'MBI01_g32854_MAGBIO' => 'mbi', 'MBI11_g24427_MAGBIO' => 'mbi', 'MBI11_g47319_MAGBIO' => 'mbi', 'MCO01G433' => 'mco', 'MD00G1187800' => 'mdo', 'MD04G1226500' => 'mdo', 'MD05G1203900' => 'mdo', 'MD10G1191100' => 'mdo', 'MD12G1243500' => 'mdo', 'MD13G1207000' => 'mdo', 'MD13G1207100' => 'mdo', 'MD16G1208600' => 'mdo', 'Medtr1g050352' => 'mtr', 'Medtr1g070385' => 'mtr', 'Medtr1g070450' => 'mtr', 'Medtr1g075200' => 'mtr', 'Medtr1g075250' => 'mtr', 'Medtr1g075260' => 'mtr', 'Medtr1g475250' => 'mtr', 'Medtr4g075450' => 'mtr', 'Medtr7g096300' => 'mtr', 'Medtr8g105110' => 'mtr', 'MELO3C006470.2' => 'cme', 'MELO3C006471.2' => 'cme', 'MELO3C020772.2' => 'cme', 'MELO3C026780.2' => 'cme', 'MELO3C026781.2' => 'cme', 'Migut.D00390' => 'egut', 'Migut.G00435' => 'egut', 'Migut.G00436' => 'egut', 'Migut.G00718' => 'egut', 'MSTRG.21891' => 'ama', 'MSTRG.26910' => 'ama', 'MSTRG.4099' => 'ama', 'MSTRG.9925' => 'ama', 'Nitab4.5_0000165g0010' => 'nta', 'Nitab4.5_0000209g0180' => 'nta', 'Nitab4.5_0000244g0440' => 'nta', 'Nitab4.5_0000525g0220' => 'nta', 'Nitab4.5_0001597g0020' => 'nta', 'Nitab4.5_0001878g0040' => 'nta', 'Nitab4.5_0001878g0060' => 'nta', 'Nitab4.5_0002838g0100' => 'nta', 'Nitab4.5_0002838g0120' => 'nta', 'Nitab4.5_0004798g0030' => 'nta', 'Nitab4.5_0005420g0010' => 'nta', 'Nitab4.5_0005507g0010' => 'nta', 'Nitab4.5_0005574g0020' => 'nta', 'Nitab4.5_0005838g0010' => 'nta', 'Nitab4.5_0010580g0020' => 'nta', 'Nn1g02599' => 'nnu', 'Nn1g02608' => 'nnu', 'Nn3g17742' => 'nnu', 'Nn3g19534' => 'nnu', 'Nn3g19535' => 'nnu', 'Oeu008790.1' => 'oeu', 'Oeu008792.1' => 'oeu', 'Oeu032590.1' => 'oeu', 'Oeu035349.1' => 'oeu', 'Oeu049791.1' => 'oeu', 'Os01g0774500' => 'osa', 'Os03g0628800' => 'osa', 'Os03g0798600' => 'osa', 'Os05g0508800' => 'osa', 'Peaxi162Scf00036g02018' => 'pax', 'Peaxi162Scf00578g00032' => 'pax', 'Peaxi162Scf00578g00317' => 'pax', 'Peaxi162Scf00785g00114' => 'pax', 'Peaxi162Scf00813g00119' => 'pax', 'Peaxi162Scf00906g00227' => 'pax', 'PGR004G0875' => 'pgr', 'PGR004G2424' => 'pgr', 'PGR031G1239' => 'pgr', 'PGR031G2474' => 'pgr', 'PGR044G0423' => 'pgr', 'PGSC0003DMG400001128' => 'stu', 'PGSC0003DMG400007336' => 'stu', 'PGSC0003DMG400016318' => 'stu', 'PGSC0003DMG400016319' => 'stu', 'PGSC0003DMG400018074' => 'stu', 'Phvul.001G157700' => 'pvu', 'Phvul.002G148550' => 'pvu', 'Phvul.002G320200' => 'pvu', 'Phvul.003G089200' => 'pvu', 'Phvul.007G126000' => 'pvu', 'Phvul.007G126100' => 'pvu', 'Phvul.007G178000' => 'pvu', 'Phvul.007G178200' => 'pvu', 'Potri.002G043000' => 'ptr', 'Potri.002G043200' => 'ptr', 'Potri.003G123750' => 'ptr', 'Potri.005G055401' => 'ptr', 'Potri.005G219700' => 'ptr', 'Potri.005G220000' => 'ptr', 'Potri.008G161901' => 'ptr', 'Potri.008G162000' => 'ptr', 'Potri.008G162400' => 'ptr', 'Potri.010G076900' => 'ptr', 'Pp3c12_9180' => 'ppa', 'Pp3c13_19770' => 'ppa', 'Pp3c14_22950' => 'ppa', 'Pp3c16_12160' => 'ppa', 'Pp3c27_7820' => 'ppa', 'Pp3c2_3490' => 'ppa', 'Pp3c3_23700' => 'ppa', 'Pp3c3_36520' => 'ppa', 'Pp3c4_15250' => 'ppa', 'PRCOL_00007002' => 'pco', 'Prupe.1G030600' => 'ppe', 'Prupe.1G030700' => 'ppe', 'Prupe.6G345200' => 'ppe', 'Prupe.8G230300' => 'ppe', 'Prupe.8G230500' => 'ppe', 'Psat3g059600' => 'psa', 'Psat5g200920' => 'psa', 'Psat6g056440' => 'psa', 'Psat6g057360' => 'psa', 'Psat6g134120' => 'psa', 'Psat6g134160' => 'psa', 'Psat7g008640' => 'psa', 'Psat7g185240' => 'psa', 'PSO017G1330' => 'pso', 'PSO063G6097' => 'pso', 'PSO170G0835' => 'pso', 'PSO170G2499' => 'pso', 'PSO210G5058' => 'pso', 'PSO210G6154' => 'pso', 'PSO585G0031' => 'pso', 'PSO832G0264' => 'pso', 'PSO832G4288' => 'pso', 'QL03p027355' => 'qlo', 'QL03p027430' => 'qlo', 'QL04p081380' => 'qlo', 'QL06p015642' => 'qlo', 'QL06p015650' => 'qlo', 'QL06p015686' => 'qlo', 'QL12p042927' => 'qlo', 'QL93p1863_0035' => 'qlo', 'RcHm_v2.0_Chr3g0450581' => 'rch', 'RcHm_v2.0_Chr4g0390371' => 'rch', 'RcHm_v2.0_Chr4g0390381' => 'rch', 'RcHm_v2.0_Chr4g0390491' => 'rch', 'RcHm_v2.0_Chr4g0390501' => 'rch', 'RcHm_v2.0_Chr6g0289231' => 'rch', 'Rhsim04G0190400' => 'rsi', 'Rhsim04G0190500' => 'rsi', 'Rhsim04G0190600' => 'rsi', 'Rhsim13G0031400' => 'rsi', 'Rhsim13G0165600' => 'rsi', 'RhsimUnG0114600' => 'rsi', 'RhsimUnG0114700' => 'rsi', 'Sabra02G0034800' => 'sbr', 'Sabra02G0035100' => 'sbr', 'Sabra05G0168600' => 'sbr', 'Sabra05G0168800' => 'sbr', 'Sabra08G0123700' => 'sbr', 'Sabra10G0031900' => 'sbr', 'Sabra13G0039000' => 'sbr', 'SalBow2G0782' => 'sbo', 'SalBow2G1403' => 'sbo', 'SalBow4G0074' => 'sbo', 'SalBow4G2635' => 'sbo', 'SalBow5G3010' => 'sbo', 'Sc05g0000870' => 'sci', 'Sc05g0000890' => 'sci', 'Sc13g0005000' => 'sci', 'Sc13g0005030' => 'sci', 'Sc19g0003790' => 'sci', 'Sc19g0003800' => 'sci', 'Sed0003467' => 'sed', 'Sed0009355' => 'sed', 'Sed0009894' => 'sed', 'Sed0011972' => 'sed', 'Sed0021483' => 'sed', 'Sed0021750' => 'sed', 'Sed0026279' => 'sed', 'SEGI_05312' => 'sgi', 'SEGI_10112' => 'sgi', 'SEGI_15835' => 'sgi', 'SEGI_30386' => 'sgi', 'SEGI_34122' => 'sgi', 'SEGI_35063' => 'sgi', 'SGA_v2.0_scaffold101G29794' => 'sas', 'SGA_v2.0_scaffold1G00573' => 'sas', 'SGA_v2.0_scaffold79G25637' => 'sas', 'SGA_v2.0_scaffold88G27283' => 'sas', 'SGA_v2.0_scaffold88G27285' => 'sas', 'SGA_v2.0_scaffold88G27331' => 'sas', 'SHI09937' => 'shi', 'SMO119G0302' => 'smo', 'SMO137G0231' => 'smo', 'SMO367G1151' => 'smo', 'Solyc02g082000.3' => 'sly', 'Solyc06g031670.3' => 'sly', 'Solyc06g053810.3' => 'sly', 'Solyc07g025457.1' => 'sly', 'Solyc08g059740.1' => 'sly', 'Solyc08g059750.3' => 'sly', 'Solyc09g083370.3' => 'sly', 'Solyc12g038950.3' => 'sly', 'Sopen02g026630' => 'spe', 'Sopen06g018930' => 'spe', 'Sopen06g018940' => 'spe', 'Sopen08g009460' => 'spe', 'Sopen09g032290' => 'spe', 'Sp1g03080' => 'spa', 'Sp1g03090' => 'spa', 'Sp1g05480' => 'spa', 'Sp2g07860' => 'spa', 'Sp2g08430' => 'spa', 'Sp2g08440' => 'spa', 'Sp2g26200' => 'spa', 'Sp4g13170' => 'spa', 'Sp6g33840' => 'spa', 'SpUn1204_0010' => 'spa', 'TAR365G0908' => 'tar', 'TAR381G1270' => 'tar', 'TAR381G1651' => 'tar', 'TAR625G1131' => 'tar', 'TAR633G0962' => 'tar', 'TAR633G1729' => 'tar', 'TAR633G1864' => 'tar', 'TAR636G0221' => 'tar', 'TAR636G0314' => 'tar', 'TAR636G3202' => 'tar', 'THA.LOC104800805' => 'tha', 'THA.LOC104801096' => 'tha', 'THA.LOC104801555' => 'tha', 'THA.LOC104808491' => 'tha', 'THA.LOC104808595' => 'tha', 'THA.LOC104815985' => 'tha', 'THA.LOC104822250' => 'tha', 'THA.LOC104826071' => 'tha', 'Thecc.01G265200' => 'tca', 'Thecc.01G265300' => 'tca', 'Thecc.01G265700' => 'tca', 'Thecc.03G109100' => 'tca', 'Thecc.04G245900' => 'tca', 'Thecc.04G246000' => 'tca', 'Thhalv10003334m.g' => 'esa', 'Thhalv10005508m.g' => 'esa', 'Thhalv10005643m.g' => 'esa', 'Thhalv10007316m.g' => 'esa', 'Thhalv10009006m.g' => 'esa', 'Thhalv10009309m.g' => 'esa', 'Thhalv10014917m.g' => 'esa', 'Thhalv10014919m.g' => 'esa', 'Thhalv10015393m.g' => 'esa', 'Thhalv10016515m.g' => 'esa', 'Thhalv10029242m.g' => 'esa', 'TPR.G16654' => 'tpr', 'TPR.G20589' => 'tpr', 'TPR.G23029' => 'tpr', 'TPR.G27731' => 'tpr', 'TPR.G28889' => 'tpr', 'TPR.G28899' => 'tpr', 'TPR.G30846' => 'tpr', 'TPR.G5452' => 'tpr', 'TPR.G5713' => 'tpr', 'TPR.G9046' => 'tpr', 'TPR.G9061' => 'tpr', 'TWI09G1075' => 'twi', 'TWI12G0806' => 'twi', 'TWI18G0108' => 'twi', 'TWI53G1361' => 'twi', 'TWI73G0185' => 'twi', 'TWI73G0427' => 'twi', 'unitig_37.g12001' => 'ugi', 'unitig_747.g21660' => 'ugi', 'unitig_748.g7232' => 'ugi', 'unitig_748.g7315' => 'ugi', 'unitig_85.g27262' => 'ugi', 'unitig_92.g28220' => 'ugi', 'vmacro02632' => 'vma', 'vmacro08410' => 'vma', 'vmacro08411' => 'vma', 'vmacro15407' => 'vma', 'VMungo0251G3619' => 'vmu', 'VMungo0720G1204' => 'vmu', 'VMungo0720G1918' => 'vmu', 'VMungo0720G2387' => 'vmu', 'VMungo0720G2961' => 'vmu', 'VMungo1215G2154' => 'vmu', 'VMungo1383G2411' => 'vmu', 'Zm00001eb051130' => 'zma', 'Zm00001eb116830' => 'zma', 'Zm00001eb116850' => 'zma', 'Zm00001eb151740' => 'zma', 'Zm00001eb292360' => 'zma', 'Zm00001eb301640' => 'zma' ), 'gf_id' => 'HOM05D000856', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000856' ), 'data_identifier' => 'HOM05D000856', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000856', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p00010' => 'bna', 'A03p04160' => 'bna', 'A03p17160' => 'bna', 'A04p23370' => 'bna', 'A05p14860' => 'bna', 'A08p37020' => 'bna', 'A09p08050' => 'bna', 'A09p66800' => 'bna', 'A09p67940' => 'bna', 'A10p02680' => 'bna', 'A10p05320' => 'bna', 'Aa31LG1G20560' => 'aar', 'Aa31LG1G20610' => 'aar', 'Aa31LG1G7810' => 'aar', 'Aa31LG5G3590' => 'aar', 'Aa31LG5G6140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3819' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4683' => 'aag', 'Actinidia04480' => 'ach', 'Actinidia05466' => 'ach', 'Actinidia08445' => 'ach', 'Actinidia21170' => 'ach', 'Actinidia24812' => 'ach', 'Actinidia24951' => 'ach', 'Actinidia40088' => 'ach', 'Ah.02g111660' => 'amhyb', 'Ah.11g048900' => 'amhyb', 'Ah.11g049910' => 'amhyb', 'AL1G13870' => 'aly', 'AL1G13880' => 'aly', 'AL1G16760' => 'aly', 'AL390U10020' => 'aly', 'AL4G25520' => 'aly', 'AL6G19890' => 'aly', 'AL6G19900' => 'aly', 'AL6G19910' => 'aly', 'AL8G40100' => 'aly', 'Aqoxy2G03562' => 'aox', 'Aqoxy5G00316' => 'aox', 'Aqoxy5G00926' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1628KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1H403S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2FU6SJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.882I6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8YRY2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YN1SN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AF70II' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZA8L1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F916KL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHRD8H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KTZ8QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S22EMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8M29T' => 'arhy', 'AT1G04270' => 'ath', 'AT1G04280' => 'ath', 'AT1G06750' => 'ath', 'AT1G33850' => 'ath', 'AT2G30630' => 'ath', 'AT5G09490' => 'ath', 'AT5G09500' => 'ath', 'AT5G09510' => 'ath', 'AT5G43640' => 'ath', 'AT5G63070' => 'ath', 'ATR0605G315' => 'atr', 'Atru.chr11.175' => 'acertr', 'Atru.chr11.653' => 'acertr', 'Atru.chr3.1616' => 'acertr', 'Atru.chr4.2230' => 'acertr', 'Atru.chr4.2232' => 'acertr', 'Atru.chr5.1598' => 'acertr', 'Atru.chr5.1600' => 'acertr', 'Atru.chr5.2188' => 'acertr', 'AUR62008326' => 'cqu', 'AUR62011922' => 'cqu', 'AUR62011924' => 'cqu', 'AUR62021771' => 'cqu', 'AUR62032237' => 'cqu', 'AUR62032240' => 'cqu', 'BcaB01g05572' => 'bca', 'BcaB02g10337' => 'bca', 'BcaB04g19944' => 'bca', 'BcaB05g21548' => 'bca', 'BcaB05g21549' => 'bca', 'BcaB05g23227' => 'bca', 'BcaB06g26256' => 'bca', 'BcaB06g26257' => 'bca', 'BcaB06g28379' => 'bca', 'BcaC02g11159' => 'bca', 'BcaC03g13258' => 'bca', 'BcaC03g13259' => 'bca', 'BcaC05g24456' => 'bca', 'BcaC05g24457' => 'bca', 'BcaC07g36922' => 'bca', 'BcaC07g36923' => 'bca', 'BcaC07g42050' => 'bca', 'BcaC07g42176' => 'bca', 'BcaC07g42195' => 'bca', 'BcaC07g42196' => 'bca', 'BcaNung06674' => 'bca', 'BolC2t06351H' => 'bol', 'BolC2t06352H' => 'bol', 'BolC3t12993H' => 'bol', 'BolC4t23525H' => 'bol', 'BolC4t27475H' => 'bol', 'BolC5t29025H' => 'bol', 'BolC5t29026H' => 'bol', 'BolC8t46898H' => 'bol', 'BolC8t46899H' => 'bol', 'BolC8t52630H' => 'bol', 'BolC8t52765H' => 'bol', 'BolC9t53824H' => 'bol', 'BraA03t09760Z' => 'bra', 'BraA03t10990Z' => 'bra', 'BraA05t20413Z' => 'bra', 'BraA08t35602Z' => 'bra', 'BraA09t36458Z' => 'bra', 'BraA09t42018Z' => 'bra', 'BraA09t42129Z' => 'bra', 'BraA10t42536Z' => 'bra', 'BraA10t42537Z' => 'bra', 'C01p10690' => 'bna', 'C02p03890' => 'bna', 'C02p03900' => 'bna', 'C03p04620' => 'bna', 'C04p19870' => 'bna', 'C04p59670' => 'bna', 'C05p02460' => 'bna', 'C05p02470' => 'bna', 'C08p00980' => 'bna', 'C08p00990' => 'bna', 'C08p51030' => 'bna', 'C08p52360' => 'bna', 'C09p09120' => 'bna', 'CAN.G19.15' => 'can', 'CAN.G251.10' => 'can', 'CAN.G251.9' => 'can', 'CAN.G398.24' => 'can', 'CAN.G410.32' => 'can', 'CAN.G881.2' => 'can', 'CANSAT01G3025' => 'cansat', 'CANSAT78G1211' => 'cansat', 'CANSAT78G1218' => 'cansat', 'CANSAT78G1521' => 'cansat', 'CANSAT78G1670' => 'cansat', 'CARHR003600' => 'chi', 'CARHR003610' => 'chi', 'CARHR006290' => 'chi', 'CARHR006430' => 'chi', 'CARHR124110' => 'chi', 'CARHR203870' => 'chi', 'CARHR203880' => 'chi', 'CARHR203890' => 'chi', 'CARHR276880' => 'chi', 'Carub.0001s0346' => 'cru', 'Carub.0001s0347' => 'cru', 'Carub.0001s0607' => 'cru', 'Carub.0003s2768' => 'cru', 'Carub.0003s2769' => 'cru', 'Carub.0004s1178' => 'cru', 'Carub.0006s0806' => 'cru', 'Carub.0006s0807' => 'cru', 'Carub.0006s0808' => 'cru', 'Carub.0008s0501' => 'cru', 'Carub.0008s2379' => 'cru', 'Ca_08655_v3' => 'car', 'Ca_08922_v3' => 'car', 'Ca_08923_v3' => 'car', 'Ca_09119_v3' => 'car', 'Ca_09703_v3' => 'car', 'Ca_09705_v3' => 'car', 'Ca_09835_v3' => 'car', 'Ca_26403_v3' => 'car', 'Ca_30719_v3' => 'car', 'CBR_g17958' => 'cbr', 'CBR_g40516' => 'cbr', 'Cc00_g05350' => 'ccan', 'Cc01_g18690' => 'ccan', 'Cc03_g04830' => 'ccan', 'Cc03_g04850' => 'ccan', 'CDE02G4469' => 'cde', 'CDE06G0883' => 'cde', 'CDE06G1295' => 'cde', 'CDE06G1390' => 'cde', 'CDE07G0584' => 'cde', 'CDE07G1084' => 'cde', 'CDE08G1259' => 'cde', 'Cfa002341' => 'cfa', 'Cfa024337' => 'cfa', 'Ciclev10004749m.g' => 'ccl', 'Ciclev10006127m.g' => 'ccl', 'Ciclev10019720m.g' => 'ccl', 'Ciclev10022652m.g' => 'ccl', 'CiPaw.01G190400' => 'cil', 'CiPaw.01G190500' => 'cil', 'CiPaw.02G116400' => 'cil', 'CiPaw.02G116500' => 'cil', 'CiPaw.04G183000' => 'cil', 'CiPaw.04G183300' => 'cil', 'ClCG05G004610' => 'cla', 'ClCG05G004620' => 'cla', 'ClCG06G006730' => 'cla', 'ClCG06G006740' => 'cla', 'ClCG11G003690' => 'cla', 'COL.COLO4_08276' => 'col', 'COL.COLO4_08277' => 'col', 'COL.COLO4_15787' => 'col', 'COL.COLO4_15789' => 'col', 'Cpa.g.c44815' => 'cpa', 'Cpa.g.sc52.144' => 'cpa', 'Cpa.g.sc58.46' => 'cpa', 'Cpa.g.sc58.47' => 'cpa', 'Cre08.g360900' => 'cre', 'CsaV3_2G013030' => 'csa', 'CsaV3_2G013050' => 'csa', 'CsaV3_2G015620' => 'csa', 'CsaV3_3G012590' => 'csa', 'CsaV3_3G012600' => 'csa', 'CSS0001641' => 'camsi', 'CSS0008310' => 'camsi', 'CSS0013011' => 'camsi', 'CSS0017147' => 'camsi', 'CSS0022970' => 'camsi', 'CSS0025655' => 'camsi', 'CSS0028665' => 'camsi', 'CSS0029117' => 'camsi', 'CSS0032024' => 'camsi', 'CSS0039681' => 'camsi', 'CSS0046516' => 'camsi', 'CSS0050307' => 'camsi', 'DCAR_005871' => 'dca', 'DCAR_007342' => 'dca', 'DCAR_024228' => 'dca', 'DCAR_027277' => 'dca', 'DCAR_030718' => 'dca', 'Dinv20287' => 'din', 'Dinv22461' => 'din', 'Dinv22464' => 'din', 'Dinv29912' => 'din', 'Dinv29913' => 'din', 'Dinv34580' => 'din', 'Dinv34582' => 'din', 'Dinv44632' => 'din', 'Duzib052G0266' => 'dzi', 'Duzib133G0907' => 'dzi', 'Duzib133G1034' => 'dzi', 'Duzib138G0207' => 'dzi', 'Duzib138G0491' => 'dzi', 'Duzib151G0812' => 'dzi', 'Duzib151G1166' => 'dzi', 'Duzib168G0192' => 'dzi', 'Duzib211G0077' => 'dzi', 'Duzib212G0429' => 'dzi', 'Duzib212G0472' => 'dzi', 'ECA233G2617' => 'eca', 'ECA236G4188' => 'eca', 'ECA240G0936' => 'eca', 'ECA240G1129' => 'eca', 'ECA247G0623' => 'eca', 'EL10Ac5g10451' => 'bvu', 'EL10Ac5g10453' => 'bvu', 'EL10Ac5g10894' => 'bvu', 'Eucgr.H00192' => 'egr', 'Eucgr.H00193' => 'egr', 'Eucgr.H00194' => 'egr', 'Eucgr.J01562' => 'egr', 'Eucgr.K03301' => 'egr', 'FAN02G0632' => 'fan', 'FAN05G5378' => 'fan', 'FAN09G3247' => 'fan', 'FAN12G0435' => 'fan', 'FAN12G2426' => 'fan', 'FAN14G1707' => 'fan', 'FAN14G4725' => 'fan', 'FAN15G2071' => 'fan', 'FAN17G3065' => 'fan', 'FAN19G1376' => 'fan', 'FAN20G0354' => 'fan', 'FAN20G2429' => 'fan', 'FAN20G2658' => 'fan', 'FAN24G2343' => 'fan', 'FAN27G2362' => 'fan', 'FAN28G1765' => 'fan', 'FvH4_1g16020' => 'fve', 'FvH4_2g04890' => 'fve', 'FvH4_2g22270' => 'fve', 'FvH4_4g02630' => 'fve', 'FvH4_4g02640' => 'fve', 'FvH4_6g02650' => 'fve', 'Glyma.02G140600' => 'gma', 'Glyma.03G159900' => 'gma', 'Glyma.05G234800' => 'gma', 'Glyma.07G269600' => 'gma', 'Glyma.08G042300' => 'gma', 'Glyma.10G033500' => 'gma', 'Glyma.10G185200' => 'gma', 'Glyma.17G004300' => 'gma', 'Glyma.19G161900' => 'gma', 'Glyma.20G205100' => 'gma', 'Glyma.20G205200' => 'gma', 'Gohir.A01G139101' => 'ghi', 'Gohir.A02G035600' => 'ghi', 'Gohir.A02G117901' => 'ghi', 'Gohir.A07G210100' => 'ghi', 'Gohir.A07G210200' => 'ghi', 'Gohir.A08G061100' => 'ghi', 'Gohir.A09G223000' => 'ghi', 'Gohir.A09G223100' => 'ghi', 'Gohir.A10G113900' => 'ghi', 'Gohir.A10G114000' => 'ghi', 'Gohir.D02G042300' => 'ghi', 'Gohir.D07G216100' => 'ghi', 'Gohir.D07G216200' => 'ghi', 'Gohir.D08G070400' => 'ghi', 'Gohir.D09G225000' => 'ghi', 'Gohir.D09G225100' => 'ghi', 'Gohir.D10G152300' => 'ghi', 'Gohir.D10G153200' => 'ghi', 'Gohir.D11G133701' => 'ghi', 'Gorai.004G074100' => 'gra', 'Gorai.005G046800' => 'gra', 'Gorai.006G246500' => 'gra', 'Gorai.006G246600' => 'gra', 'Gorai.007G142900' => 'gra', 'Gorai.011G171000' => 'gra', 'Gorai.011G171100' => 'gra', 'Gorai.013G104300' => 'gra', 'Gorai.013G104400' => 'gra', 'GSVIVG01000754001' => 'vvi', 'GSVIVG01000756001' => 'vvi', 'GSVIVG01010903001' => 'vvi', 'GSVIVG01017623001' => 'vvi', 'GSVIVG01018113001' => 'vvi', 'GSVIVG01018116001' => 'vvi', 'GSVIVG01018118001' => 'vvi', 'HanXRQChr03g0076211' => 'han', 'HanXRQChr03g0092431' => 'han', 'HanXRQChr03g0092441' => 'han', 'HanXRQChr03g0092591' => 'han', 'HanXRQChr03g0092671' => 'han', 'HanXRQChr03g0092681' => 'han', 'HanXRQChr03g0092691' => 'han', 'HanXRQChr03g0092701' => 'han', 'HanXRQChr03g0092721' => 'han', 'HanXRQChr03g0092731' => 'han', 'HanXRQChr04g0113681' => 'han', 'HanXRQChr10g0281371' => 'han', 'HanXRQChr11g0337141' => 'han', 'HanXRQChr13g0424521' => 'han', 'HanXRQChr13g0424531' => 'han', 'HanXRQChr13g0424541' => 'han', 'HanXRQChr16g0498221' => 'han', 'Haze_04377' => 'cav', 'Haze_11298' => 'cav', 'Haze_24547' => 'cav', 'Haze_24550' => 'cav', 'Haze_26587' => 'cav', 'Hma1.2p1_0650F.1_g195410' => 'hma', 'Hma1.2p1_0893F.1_g233470' => 'hma', 'HPP92_006508' => 'vpl', 'HPP92_024780' => 'vpl', 'Hund02688' => 'sun', 'Hund09380' => 'sun', 'Hund09381' => 'sun', 'Hund09832' => 'sun', 'Hund09833' => 'sun', 'Hund11351' => 'sun', 'Hund11513' => 'sun', 'Lalb_Chr06g0162591' => 'lal', 'Lalb_Chr06g0162601' => 'lal', 'Lalb_Chr06g0169321' => 'lal', 'Lalb_Chr09g0330951' => 'lal', 'Lalb_Chr16g0387631' => 'lal', 'Lalb_Chr21g0306241' => 'lal', 'Lalb_Chr25g0290051' => 'lal', 'Lalb_Chr25g0290061' => 'lal', 'Lalb_Chr25g0290071' => 'lal', 'Lj1g0003876' => 'lja', 'Lj1P1207T36' => 'lonja', 'Lj2C1156G12' => 'lonja', 'Lj3A793G39' => 'lonja', 'Lj3C580G2' => 'lonja', 'Lj3C780G2' => 'lonja', 'Lj3C780T4' => 'lonja', 'Lj3C793G9' => 'lonja', 'Lj4g0012960' => 'lja', 'Lj5g0021252' => 'lja', 'Lj5g0021484' => 'lja', 'Lj5g0024528' => 'lja', 'Lj6A399T12' => 'lonja', 'Lj6A656G65' => 'lonja', 'Lsat_1_v5_gn_3_125500' => 'lsa', 'Lsat_1_v5_gn_3_125540' => 'lsa', 'Lsat_1_v5_gn_5_72701' => 'lsa', 'Lsat_1_v5_gn_8_91560' => 'lsa', 'Lsat_1_v5_gn_9_9640' => 'lsa', 'Manes.01G200600' => 'mes', 'Manes.01G200700' => 'mes', 'Manes.03G168900' => 'mes', 'Manes.03G169000' => 'mes', 'Manes.05G085801' => 'mes', 'Manes.05G086200' => 'mes', 'Manes.15G036700' => 'mes', 'Manes.15G036900' => 'mes', 'Mapoly0004s0172' => 'mpo', 'Mapoly0023s0001' => 'mpo', 'Mapoly0142s0012' => 'mpo', 'MBI01_g32854_MAGBIO' => 'mbi', 'MBI11_g24427_MAGBIO' => 'mbi', 'MBI11_g47319_MAGBIO' => 'mbi', 'MCO01G433' => 'mco', 'MD00G1187800' => 'mdo', 'MD04G1226500' => 'mdo', 'MD05G1203900' => 'mdo', 'MD10G1191100' => 'mdo', 'MD12G1243500' => 'mdo', 'MD13G1207000' => 'mdo', 'MD13G1207100' => 'mdo', 'MD16G1208600' => 'mdo', 'Medtr1g050352' => 'mtr', 'Medtr1g070385' => 'mtr', 'Medtr1g070450' => 'mtr', 'Medtr1g075200' => 'mtr', 'Medtr1g075250' => 'mtr', 'Medtr1g075260' => 'mtr', 'Medtr1g475250' => 'mtr', 'Medtr4g075450' => 'mtr', 'Medtr7g096300' => 'mtr', 'Medtr8g105110' => 'mtr', 'MELO3C006470.2' => 'cme', 'MELO3C006471.2' => 'cme', 'MELO3C020772.2' => 'cme', 'MELO3C026780.2' => 'cme', 'MELO3C026781.2' => 'cme', 'Migut.D00390' => 'egut', 'Migut.G00435' => 'egut', 'Migut.G00436' => 'egut', 'Migut.G00718' => 'egut', 'MSTRG.21891' => 'ama', 'MSTRG.26910' => 'ama', 'MSTRG.4099' => 'ama', 'MSTRG.9925' => 'ama', 'Nitab4.5_0000165g0010' => 'nta', 'Nitab4.5_0000209g0180' => 'nta', 'Nitab4.5_0000244g0440' => 'nta', 'Nitab4.5_0000525g0220' => 'nta', 'Nitab4.5_0001597g0020' => 'nta', 'Nitab4.5_0001878g0040' => 'nta', 'Nitab4.5_0001878g0060' => 'nta', 'Nitab4.5_0002838g0100' => 'nta', 'Nitab4.5_0002838g0120' => 'nta', 'Nitab4.5_0004798g0030' => 'nta', 'Nitab4.5_0005420g0010' => 'nta', 'Nitab4.5_0005507g0010' => 'nta', 'Nitab4.5_0005574g0020' => 'nta', 'Nitab4.5_0005838g0010' => 'nta', 'Nitab4.5_0010580g0020' => 'nta', 'Nn1g02599' => 'nnu', 'Nn1g02608' => 'nnu', 'Nn3g17742' => 'nnu', 'Nn3g19534' => 'nnu', 'Nn3g19535' => 'nnu', 'Oeu008790.1' => 'oeu', 'Oeu008792.1' => 'oeu', 'Oeu032590.1' => 'oeu', 'Oeu035349.1' => 'oeu', 'Oeu049791.1' => 'oeu', 'Os01g0774500' => 'osa', 'Os03g0628800' => 'osa', 'Os03g0798600' => 'osa', 'Os05g0508800' => 'osa', 'Peaxi162Scf00036g02018' => 'pax', 'Peaxi162Scf00578g00032' => 'pax', 'Peaxi162Scf00578g00317' => 'pax', 'Peaxi162Scf00785g00114' => 'pax', 'Peaxi162Scf00813g00119' => 'pax', 'Peaxi162Scf00906g00227' => 'pax', 'PGR004G0875' => 'pgr', 'PGR004G2424' => 'pgr', 'PGR031G1239' => 'pgr', 'PGR031G2474' => 'pgr', 'PGR044G0423' => 'pgr', 'PGSC0003DMG400001128' => 'stu', 'PGSC0003DMG400007336' => 'stu', 'PGSC0003DMG400016318' => 'stu', 'PGSC0003DMG400016319' => 'stu', 'PGSC0003DMG400018074' => 'stu', 'Phvul.001G157700' => 'pvu', 'Phvul.002G148550' => 'pvu', 'Phvul.002G320200' => 'pvu', 'Phvul.003G089200' => 'pvu', 'Phvul.007G126000' => 'pvu', 'Phvul.007G126100' => 'pvu', 'Phvul.007G178000' => 'pvu', 'Phvul.007G178200' => 'pvu', 'Potri.002G043000' => 'ptr', 'Potri.002G043200' => 'ptr', 'Potri.003G123750' => 'ptr', 'Potri.005G055401' => 'ptr', 'Potri.005G219700' => 'ptr', 'Potri.005G220000' => 'ptr', 'Potri.008G161901' => 'ptr', 'Potri.008G162000' => 'ptr', 'Potri.008G162400' => 'ptr', 'Potri.010G076900' => 'ptr', 'Pp3c12_9180' => 'ppa', 'Pp3c13_19770' => 'ppa', 'Pp3c14_22950' => 'ppa', 'Pp3c16_12160' => 'ppa', 'Pp3c27_7820' => 'ppa', 'Pp3c2_3490' => 'ppa', 'Pp3c3_23700' => 'ppa', 'Pp3c3_36520' => 'ppa', 'Pp3c4_15250' => 'ppa', 'PRCOL_00007002' => 'pco', 'Prupe.1G030600' => 'ppe', 'Prupe.1G030700' => 'ppe', 'Prupe.6G345200' => 'ppe', 'Prupe.8G230300' => 'ppe', 'Prupe.8G230500' => 'ppe', 'Psat3g059600' => 'psa', 'Psat5g200920' => 'psa', 'Psat6g056440' => 'psa', 'Psat6g057360' => 'psa', 'Psat6g134120' => 'psa', 'Psat6g134160' => 'psa', 'Psat7g008640' => 'psa', 'Psat7g185240' => 'psa', 'PSO017G1330' => 'pso', 'PSO063G6097' => 'pso', 'PSO170G0835' => 'pso', 'PSO170G2499' => 'pso', 'PSO210G5058' => 'pso', 'PSO210G6154' => 'pso', 'PSO585G0031' => 'pso', 'PSO832G0264' => 'pso', 'PSO832G4288' => 'pso', 'QL03p027355' => 'qlo', 'QL03p027430' => 'qlo', 'QL04p081380' => 'qlo', 'QL06p015642' => 'qlo', 'QL06p015650' => 'qlo', 'QL06p015686' => 'qlo', 'QL12p042927' => 'qlo', 'QL93p1863_0035' => 'qlo', 'RcHm_v2.0_Chr3g0450581' => 'rch', 'RcHm_v2.0_Chr4g0390371' => 'rch', 'RcHm_v2.0_Chr4g0390381' => 'rch', 'RcHm_v2.0_Chr4g0390491' => 'rch', 'RcHm_v2.0_Chr4g0390501' => 'rch', 'RcHm_v2.0_Chr6g0289231' => 'rch', 'Rhsim04G0190400' => 'rsi', 'Rhsim04G0190500' => 'rsi', 'Rhsim04G0190600' => 'rsi', 'Rhsim13G0031400' => 'rsi', 'Rhsim13G0165600' => 'rsi', 'RhsimUnG0114600' => 'rsi', 'RhsimUnG0114700' => 'rsi', 'Sabra02G0034800' => 'sbr', 'Sabra02G0035100' => 'sbr', 'Sabra05G0168600' => 'sbr', 'Sabra05G0168800' => 'sbr', 'Sabra08G0123700' => 'sbr', 'Sabra10G0031900' => 'sbr', 'Sabra13G0039000' => 'sbr', 'SalBow2G0782' => 'sbo', 'SalBow2G1403' => 'sbo', 'SalBow4G0074' => 'sbo', 'SalBow4G2635' => 'sbo', 'SalBow5G3010' => 'sbo', 'Sc05g0000870' => 'sci', 'Sc05g0000890' => 'sci', 'Sc13g0005000' => 'sci', 'Sc13g0005030' => 'sci', 'Sc19g0003790' => 'sci', 'Sc19g0003800' => 'sci', 'Sed0003467' => 'sed', 'Sed0009355' => 'sed', 'Sed0009894' => 'sed', 'Sed0011972' => 'sed', 'Sed0021483' => 'sed', 'Sed0021750' => 'sed', 'Sed0026279' => 'sed', 'SEGI_05312' => 'sgi', 'SEGI_10112' => 'sgi', 'SEGI_15835' => 'sgi', 'SEGI_30386' => 'sgi', 'SEGI_34122' => 'sgi', 'SEGI_35063' => 'sgi', 'SGA_v2.0_scaffold101G29794' => 'sas', 'SGA_v2.0_scaffold1G00573' => 'sas', 'SGA_v2.0_scaffold79G25637' => 'sas', 'SGA_v2.0_scaffold88G27283' => 'sas', 'SGA_v2.0_scaffold88G27285' => 'sas', 'SGA_v2.0_scaffold88G27331' => 'sas', 'SHI09937' => 'shi', 'SMO119G0302' => 'smo', 'SMO137G0231' => 'smo', 'SMO367G1151' => 'smo', 'Solyc02g082000.3' => 'sly', 'Solyc06g031670.3' => 'sly', 'Solyc06g053810.3' => 'sly', 'Solyc07g025457.1' => 'sly', 'Solyc08g059740.1' => 'sly', 'Solyc08g059750.3' => 'sly', 'Solyc09g083370.3' => 'sly', 'Solyc12g038950.3' => 'sly', 'Sopen02g026630' => 'spe', 'Sopen06g018930' => 'spe', 'Sopen06g018940' => 'spe', 'Sopen08g009460' => 'spe', 'Sopen09g032290' => 'spe', 'Sp1g03080' => 'spa', 'Sp1g03090' => 'spa', 'Sp1g05480' => 'spa', 'Sp2g07860' => 'spa', 'Sp2g08430' => 'spa', 'Sp2g08440' => 'spa', 'Sp2g26200' => 'spa', 'Sp4g13170' => 'spa', 'Sp6g33840' => 'spa', 'SpUn1204_0010' => 'spa', 'TAR365G0908' => 'tar', 'TAR381G1270' => 'tar', 'TAR381G1651' => 'tar', 'TAR625G1131' => 'tar', 'TAR633G0962' => 'tar', 'TAR633G1729' => 'tar', 'TAR633G1864' => 'tar', 'TAR636G0221' => 'tar', 'TAR636G0314' => 'tar', 'TAR636G3202' => 'tar', 'THA.LOC104800805' => 'tha', 'THA.LOC104801096' => 'tha', 'THA.LOC104801555' => 'tha', 'THA.LOC104808491' => 'tha', 'THA.LOC104808595' => 'tha', 'THA.LOC104815985' => 'tha', 'THA.LOC104822250' => 'tha', 'THA.LOC104826071' => 'tha', 'Thecc.01G265200' => 'tca', 'Thecc.01G265300' => 'tca', 'Thecc.01G265700' => 'tca', 'Thecc.03G109100' => 'tca', 'Thecc.04G245900' => 'tca', 'Thecc.04G246000' => 'tca', 'Thhalv10003334m.g' => 'esa', 'Thhalv10005508m.g' => 'esa', 'Thhalv10005643m.g' => 'esa', 'Thhalv10007316m.g' => 'esa', 'Thhalv10009006m.g' => 'esa', 'Thhalv10009309m.g' => 'esa', 'Thhalv10014917m.g' => 'esa', 'Thhalv10014919m.g' => 'esa', 'Thhalv10015393m.g' => 'esa', 'Thhalv10016515m.g' => 'esa', 'Thhalv10029242m.g' => 'esa', 'TPR.G16654' => 'tpr', 'TPR.G20589' => 'tpr', 'TPR.G23029' => 'tpr', 'TPR.G27731' => 'tpr', 'TPR.G28889' => 'tpr', 'TPR.G28899' => 'tpr', 'TPR.G30846' => 'tpr', 'TPR.G5452' => 'tpr', 'TPR.G5713' => 'tpr', 'TPR.G9046' => 'tpr', 'TPR.G9061' => 'tpr', 'TWI09G1075' => 'twi', 'TWI12G0806' => 'twi', 'TWI18G0108' => 'twi', 'TWI53G1361' => 'twi', 'TWI73G0185' => 'twi', 'TWI73G0427' => 'twi', 'unitig_37.g12001' => 'ugi', 'unitig_747.g21660' => 'ugi', 'unitig_748.g7232' => 'ugi', 'unitig_748.g7315' => 'ugi', 'unitig_85.g27262' => 'ugi', 'unitig_92.g28220' => 'ugi', 'vmacro02632' => 'vma', 'vmacro08410' => 'vma', 'vmacro08411' => 'vma', 'vmacro15407' => 'vma', 'VMungo0251G3619' => 'vmu', 'VMungo0720G1204' => 'vmu', 'VMungo0720G1918' => 'vmu', 'VMungo0720G2387' => 'vmu', 'VMungo0720G2961' => 'vmu', 'VMungo1215G2154' => 'vmu', 'VMungo1383G2411' => 'vmu', 'Zm00001eb051130' => 'zma', 'Zm00001eb116830' => 'zma', 'Zm00001eb116850' => 'zma', 'Zm00001eb151740' => 'zma', 'Zm00001eb292360' => 'zma', 'Zm00001eb301640' => 'zma' ) $gf_id = 'HOM05D000856' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000856' ) $data_identifier = 'HOM05D000856' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 13, 'ath' => (int) 10, 'atr' => (int) 1, 'acertr' => (int) 8, 'cqu' => (int) 6, 'bca' => (int) 21, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 11, 'car' => (int) 9, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 8, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 5, 'fan' => (int) 16, 'fve' => (int) 6, 'gma' => (int) 11, 'ghi' => (int) 19, 'gra' => (int) 9, 'vvi' => (int) 7, 'han' => (int) 17, 'cav' => (int) 5, 'hma' => (int) 2, 'vpl' => (int) 2, 'sun' => (int) 7, 'lal' => (int) 9, 'lja' => (int) 5, 'lonja' => (int) 9, 'lsa' => (int) 5, 'mes' => (int) 8, 'mpo' => (int) 3, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 10, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 15, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 9, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 9, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 6, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 5, 'spa' => (int) 10, 'tar' => (int) 10, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 11, 'tpr' => (int) 11, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 4, 'vmu' => (int) 7, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb301640' $species_info = array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ) $local_species = 'cfa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000856', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p00010' => 'bna', 'A03p04160' => 'bna', 'A03p17160' => 'bna', 'A04p23370' => 'bna', 'A05p14860' => 'bna', 'A08p37020' => 'bna', 'A09p08050' => 'bna', 'A09p66800' => 'bna', 'A09p67940' => 'bna', 'A10p02680' => 'bna', 'A10p05320' => 'bna', 'Aa31LG1G20560' => 'aar', 'Aa31LG1G20610' => 'aar', 'Aa31LG1G7810' => 'aar', 'Aa31LG5G3590' => 'aar', 'Aa31LG5G6140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3819' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4683' => 'aag', 'Actinidia04480' => 'ach', 'Actinidia05466' => 'ach', 'Actinidia08445' => 'ach', 'Actinidia21170' => 'ach', 'Actinidia24812' => 'ach', 'Actinidia24951' => 'ach', 'Actinidia40088' => 'ach', 'Ah.02g111660' => 'amhyb', 'Ah.11g048900' => 'amhyb', 'Ah.11g049910' => 'amhyb', 'AL1G13870' => 'aly', 'AL1G13880' => 'aly', 'AL1G16760' => 'aly', 'AL390U10020' => 'aly', 'AL4G25520' => 'aly', 'AL6G19890' => 'aly', 'AL6G19900' => 'aly', 'AL6G19910' => 'aly', 'AL8G40100' => 'aly', 'Aqoxy2G03562' => 'aox', 'Aqoxy5G00316' => 'aox', 'Aqoxy5G00926' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1628KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1H403S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2FU6SJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.882I6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8YRY2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YN1SN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AF70II' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZA8L1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F916KL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHRD8H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KTZ8QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S22EMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8M29T' => 'arhy', 'AT1G04270' => 'ath', 'AT1G04280' => 'ath', 'AT1G06750' => 'ath', 'AT1G33850' => 'ath', 'AT2G30630' => 'ath', 'AT5G09490' => 'ath', 'AT5G09500' => 'ath', 'AT5G09510' => 'ath', 'AT5G43640' => 'ath', 'AT5G63070' => 'ath', 'ATR0605G315' => 'atr', 'Atru.chr11.175' => 'acertr', 'Atru.chr11.653' => 'acertr', 'Atru.chr3.1616' => 'acertr', 'Atru.chr4.2230' => 'acertr', 'Atru.chr4.2232' => 'acertr', 'Atru.chr5.1598' => 'acertr', 'Atru.chr5.1600' => 'acertr', 'Atru.chr5.2188' => 'acertr', 'AUR62008326' => 'cqu', 'AUR62011922' => 'cqu', 'AUR62011924' => 'cqu', 'AUR62021771' => 'cqu', 'AUR62032237' => 'cqu', 'AUR62032240' => 'cqu', 'BcaB01g05572' => 'bca', 'BcaB02g10337' => 'bca', 'BcaB04g19944' => 'bca', 'BcaB05g21548' => 'bca', 'BcaB05g21549' => 'bca', 'BcaB05g23227' => 'bca', 'BcaB06g26256' => 'bca', 'BcaB06g26257' => 'bca', 'BcaB06g28379' => 'bca', 'BcaC02g11159' => 'bca', 'BcaC03g13258' => 'bca', 'BcaC03g13259' => 'bca', 'BcaC05g24456' => 'bca', 'BcaC05g24457' => 'bca', 'BcaC07g36922' => 'bca', 'BcaC07g36923' => 'bca', 'BcaC07g42050' => 'bca', 'BcaC07g42176' => 'bca', 'BcaC07g42195' => 'bca', 'BcaC07g42196' => 'bca', 'BcaNung06674' => 'bca', 'BolC2t06351H' => 'bol', 'BolC2t06352H' => 'bol', 'BolC3t12993H' => 'bol', 'BolC4t23525H' => 'bol', 'BolC4t27475H' => 'bol', 'BolC5t29025H' => 'bol', 'BolC5t29026H' => 'bol', 'BolC8t46898H' => 'bol', 'BolC8t46899H' => 'bol', 'BolC8t52630H' => 'bol', 'BolC8t52765H' => 'bol', 'BolC9t53824H' => 'bol', 'BraA03t09760Z' => 'bra', 'BraA03t10990Z' => 'bra', 'BraA05t20413Z' => 'bra', 'BraA08t35602Z' => 'bra', 'BraA09t36458Z' => 'bra', 'BraA09t42018Z' => 'bra', 'BraA09t42129Z' => 'bra', 'BraA10t42536Z' => 'bra', 'BraA10t42537Z' => 'bra', 'C01p10690' => 'bna', 'C02p03890' => 'bna', 'C02p03900' => 'bna', 'C03p04620' => 'bna', 'C04p19870' => 'bna', 'C04p59670' => 'bna', 'C05p02460' => 'bna', 'C05p02470' => 'bna', 'C08p00980' => 'bna', 'C08p00990' => 'bna', 'C08p51030' => 'bna', 'C08p52360' => 'bna', 'C09p09120' => 'bna', 'CAN.G19.15' => 'can', 'CAN.G251.10' => 'can', 'CAN.G251.9' => 'can', 'CAN.G398.24' => 'can', 'CAN.G410.32' => 'can', 'CAN.G881.2' => 'can', 'CANSAT01G3025' => 'cansat', 'CANSAT78G1211' => 'cansat', 'CANSAT78G1218' => 'cansat', 'CANSAT78G1521' => 'cansat', 'CANSAT78G1670' => 'cansat', 'CARHR003600' => 'chi', 'CARHR003610' => 'chi', 'CARHR006290' => 'chi', 'CARHR006430' => 'chi', 'CARHR124110' => 'chi', 'CARHR203870' => 'chi', 'CARHR203880' => 'chi', 'CARHR203890' => 'chi', 'CARHR276880' => 'chi', 'Carub.0001s0346' => 'cru', 'Carub.0001s0347' => 'cru', 'Carub.0001s0607' => 'cru', 'Carub.0003s2768' => 'cru', 'Carub.0003s2769' => 'cru', 'Carub.0004s1178' => 'cru', 'Carub.0006s0806' => 'cru', 'Carub.0006s0807' => 'cru', 'Carub.0006s0808' => 'cru', 'Carub.0008s0501' => 'cru', 'Carub.0008s2379' => 'cru', 'Ca_08655_v3' => 'car', 'Ca_08922_v3' => 'car', 'Ca_08923_v3' => 'car', 'Ca_09119_v3' => 'car', 'Ca_09703_v3' => 'car', 'Ca_09705_v3' => 'car', 'Ca_09835_v3' => 'car', 'Ca_26403_v3' => 'car', 'Ca_30719_v3' => 'car', 'CBR_g17958' => 'cbr', 'CBR_g40516' => 'cbr', 'Cc00_g05350' => 'ccan', 'Cc01_g18690' => 'ccan', 'Cc03_g04830' => 'ccan', 'Cc03_g04850' => 'ccan', 'CDE02G4469' => 'cde', 'CDE06G0883' => 'cde', 'CDE06G1295' => 'cde', 'CDE06G1390' => 'cde', 'CDE07G0584' => 'cde', 'CDE07G1084' => 'cde', 'CDE08G1259' => 'cde', 'Cfa002341' => 'cfa', 'Cfa024337' => 'cfa', 'Ciclev10004749m.g' => 'ccl', 'Ciclev10006127m.g' => 'ccl', 'Ciclev10019720m.g' => 'ccl', 'Ciclev10022652m.g' => 'ccl', 'CiPaw.01G190400' => 'cil', 'CiPaw.01G190500' => 'cil', 'CiPaw.02G116400' => 'cil', 'CiPaw.02G116500' => 'cil', 'CiPaw.04G183000' => 'cil', 'CiPaw.04G183300' => 'cil', 'ClCG05G004610' => 'cla', 'ClCG05G004620' => 'cla', 'ClCG06G006730' => 'cla', 'ClCG06G006740' => 'cla', 'ClCG11G003690' => 'cla', 'COL.COLO4_08276' => 'col', 'COL.COLO4_08277' => 'col', 'COL.COLO4_15787' => 'col', 'COL.COLO4_15789' => 'col', 'Cpa.g.c44815' => 'cpa', 'Cpa.g.sc52.144' => 'cpa', 'Cpa.g.sc58.46' => 'cpa', 'Cpa.g.sc58.47' => 'cpa', 'Cre08.g360900' => 'cre', 'CsaV3_2G013030' => 'csa', 'CsaV3_2G013050' => 'csa', 'CsaV3_2G015620' => 'csa', 'CsaV3_3G012590' => 'csa', 'CsaV3_3G012600' => 'csa', 'CSS0001641' => 'camsi', 'CSS0008310' => 'camsi', 'CSS0013011' => 'camsi', 'CSS0017147' => 'camsi', 'CSS0022970' => 'camsi', 'CSS0025655' => 'camsi', 'CSS0028665' => 'camsi', 'CSS0029117' => 'camsi', 'CSS0032024' => 'camsi', 'CSS0039681' => 'camsi', 'CSS0046516' => 'camsi', 'CSS0050307' => 'camsi', 'DCAR_005871' => 'dca', 'DCAR_007342' => 'dca', 'DCAR_024228' => 'dca', 'DCAR_027277' => 'dca', 'DCAR_030718' => 'dca', 'Dinv20287' => 'din', 'Dinv22461' => 'din', 'Dinv22464' => 'din', 'Dinv29912' => 'din', 'Dinv29913' => 'din', 'Dinv34580' => 'din', 'Dinv34582' => 'din', 'Dinv44632' => 'din', 'Duzib052G0266' => 'dzi', 'Duzib133G0907' => 'dzi', 'Duzib133G1034' => 'dzi', 'Duzib138G0207' => 'dzi', 'Duzib138G0491' => 'dzi', 'Duzib151G0812' => 'dzi', 'Duzib151G1166' => 'dzi', 'Duzib168G0192' => 'dzi', 'Duzib211G0077' => 'dzi', 'Duzib212G0429' => 'dzi', 'Duzib212G0472' => 'dzi', 'ECA233G2617' => 'eca', 'ECA236G4188' => 'eca', 'ECA240G0936' => 'eca', 'ECA240G1129' => 'eca', 'ECA247G0623' => 'eca', 'EL10Ac5g10451' => 'bvu', 'EL10Ac5g10453' => 'bvu', 'EL10Ac5g10894' => 'bvu', 'Eucgr.H00192' => 'egr', 'Eucgr.H00193' => 'egr', 'Eucgr.H00194' => 'egr', 'Eucgr.J01562' => 'egr', 'Eucgr.K03301' => 'egr', 'FAN02G0632' => 'fan', 'FAN05G5378' => 'fan', 'FAN09G3247' => 'fan', 'FAN12G0435' => 'fan', 'FAN12G2426' => 'fan', 'FAN14G1707' => 'fan', 'FAN14G4725' => 'fan', 'FAN15G2071' => 'fan', 'FAN17G3065' => 'fan', 'FAN19G1376' => 'fan', 'FAN20G0354' => 'fan', 'FAN20G2429' => 'fan', 'FAN20G2658' => 'fan', 'FAN24G2343' => 'fan', 'FAN27G2362' => 'fan', 'FAN28G1765' => 'fan', 'FvH4_1g16020' => 'fve', 'FvH4_2g04890' => 'fve', 'FvH4_2g22270' => 'fve', 'FvH4_4g02630' => 'fve', 'FvH4_4g02640' => 'fve', 'FvH4_6g02650' => 'fve', 'Glyma.02G140600' => 'gma', 'Glyma.03G159900' => 'gma', 'Glyma.05G234800' => 'gma', 'Glyma.07G269600' => 'gma', 'Glyma.08G042300' => 'gma', 'Glyma.10G033500' => 'gma', 'Glyma.10G185200' => 'gma', 'Glyma.17G004300' => 'gma', 'Glyma.19G161900' => 'gma', 'Glyma.20G205100' => 'gma', 'Glyma.20G205200' => 'gma', 'Gohir.A01G139101' => 'ghi', 'Gohir.A02G035600' => 'ghi', 'Gohir.A02G117901' => 'ghi', 'Gohir.A07G210100' => 'ghi', 'Gohir.A07G210200' => 'ghi', 'Gohir.A08G061100' => 'ghi', 'Gohir.A09G223000' => 'ghi', 'Gohir.A09G223100' => 'ghi', 'Gohir.A10G113900' => 'ghi', 'Gohir.A10G114000' => 'ghi', 'Gohir.D02G042300' => 'ghi', 'Gohir.D07G216100' => 'ghi', 'Gohir.D07G216200' => 'ghi', 'Gohir.D08G070400' => 'ghi', 'Gohir.D09G225000' => 'ghi', 'Gohir.D09G225100' => 'ghi', 'Gohir.D10G152300' => 'ghi', 'Gohir.D10G153200' => 'ghi', 'Gohir.D11G133701' => 'ghi', 'Gorai.004G074100' => 'gra', 'Gorai.005G046800' => 'gra', 'Gorai.006G246500' => 'gra', 'Gorai.006G246600' => 'gra', 'Gorai.007G142900' => 'gra', 'Gorai.011G171000' => 'gra', 'Gorai.011G171100' => 'gra', 'Gorai.013G104300' => 'gra', 'Gorai.013G104400' => 'gra', 'GSVIVG01000754001' => 'vvi', 'GSVIVG01000756001' => 'vvi', 'GSVIVG01010903001' => 'vvi', 'GSVIVG01017623001' => 'vvi', 'GSVIVG01018113001' => 'vvi', 'GSVIVG01018116001' => 'vvi', 'GSVIVG01018118001' => 'vvi', 'HanXRQChr03g0076211' => 'han', 'HanXRQChr03g0092431' => 'han', 'HanXRQChr03g0092441' => 'han', 'HanXRQChr03g0092591' => 'han', 'HanXRQChr03g0092671' => 'han', 'HanXRQChr03g0092681' => 'han', 'HanXRQChr03g0092691' => 'han', 'HanXRQChr03g0092701' => 'han', 'HanXRQChr03g0092721' => 'han', 'HanXRQChr03g0092731' => 'han', 'HanXRQChr04g0113681' => 'han', 'HanXRQChr10g0281371' => 'han', 'HanXRQChr11g0337141' => 'han', 'HanXRQChr13g0424521' => 'han', 'HanXRQChr13g0424531' => 'han', 'HanXRQChr13g0424541' => 'han', 'HanXRQChr16g0498221' => 'han', 'Haze_04377' => 'cav', 'Haze_11298' => 'cav', 'Haze_24547' => 'cav', 'Haze_24550' => 'cav', 'Haze_26587' => 'cav', 'Hma1.2p1_0650F.1_g195410' => 'hma', 'Hma1.2p1_0893F.1_g233470' => 'hma', 'HPP92_006508' => 'vpl', 'HPP92_024780' => 'vpl', 'Hund02688' => 'sun', 'Hund09380' => 'sun', 'Hund09381' => 'sun', 'Hund09832' => 'sun', 'Hund09833' => 'sun', 'Hund11351' => 'sun', 'Hund11513' => 'sun', 'Lalb_Chr06g0162591' => 'lal', 'Lalb_Chr06g0162601' => 'lal', 'Lalb_Chr06g0169321' => 'lal', 'Lalb_Chr09g0330951' => 'lal', 'Lalb_Chr16g0387631' => 'lal', 'Lalb_Chr21g0306241' => 'lal', 'Lalb_Chr25g0290051' => 'lal', 'Lalb_Chr25g0290061' => 'lal', 'Lalb_Chr25g0290071' => 'lal', 'Lj1g0003876' => 'lja', 'Lj1P1207T36' => 'lonja', 'Lj2C1156G12' => 'lonja', 'Lj3A793G39' => 'lonja', 'Lj3C580G2' => 'lonja', 'Lj3C780G2' => 'lonja', 'Lj3C780T4' => 'lonja', 'Lj3C793G9' => 'lonja', 'Lj4g0012960' => 'lja', 'Lj5g0021252' => 'lja', 'Lj5g0021484' => 'lja', 'Lj5g0024528' => 'lja', 'Lj6A399T12' => 'lonja', 'Lj6A656G65' => 'lonja', 'Lsat_1_v5_gn_3_125500' => 'lsa', 'Lsat_1_v5_gn_3_125540' => 'lsa', 'Lsat_1_v5_gn_5_72701' => 'lsa', 'Lsat_1_v5_gn_8_91560' => 'lsa', 'Lsat_1_v5_gn_9_9640' => 'lsa', 'Manes.01G200600' => 'mes', 'Manes.01G200700' => 'mes', 'Manes.03G168900' => 'mes', 'Manes.03G169000' => 'mes', 'Manes.05G085801' => 'mes', 'Manes.05G086200' => 'mes', 'Manes.15G036700' => 'mes', 'Manes.15G036900' => 'mes', 'Mapoly0004s0172' => 'mpo', 'Mapoly0023s0001' => 'mpo', 'Mapoly0142s0012' => 'mpo', 'MBI01_g32854_MAGBIO' => 'mbi', 'MBI11_g24427_MAGBIO' => 'mbi', 'MBI11_g47319_MAGBIO' => 'mbi', 'MCO01G433' => 'mco', 'MD00G1187800' => 'mdo', 'MD04G1226500' => 'mdo', 'MD05G1203900' => 'mdo', 'MD10G1191100' => 'mdo', 'MD12G1243500' => 'mdo', 'MD13G1207000' => 'mdo', 'MD13G1207100' => 'mdo', 'MD16G1208600' => 'mdo', 'Medtr1g050352' => 'mtr', 'Medtr1g070385' => 'mtr', 'Medtr1g070450' => 'mtr', 'Medtr1g075200' => 'mtr', 'Medtr1g075250' => 'mtr', 'Medtr1g075260' => 'mtr', 'Medtr1g475250' => 'mtr', 'Medtr4g075450' => 'mtr', 'Medtr7g096300' => 'mtr', 'Medtr8g105110' => 'mtr', 'MELO3C006470.2' => 'cme', 'MELO3C006471.2' => 'cme', 'MELO3C020772.2' => 'cme', 'MELO3C026780.2' => 'cme', 'MELO3C026781.2' => 'cme', 'Migut.D00390' => 'egut', 'Migut.G00435' => 'egut', 'Migut.G00436' => 'egut', 'Migut.G00718' => 'egut', 'MSTRG.21891' => 'ama', 'MSTRG.26910' => 'ama', 'MSTRG.4099' => 'ama', 'MSTRG.9925' => 'ama', 'Nitab4.5_0000165g0010' => 'nta', 'Nitab4.5_0000209g0180' => 'nta', 'Nitab4.5_0000244g0440' => 'nta', 'Nitab4.5_0000525g0220' => 'nta', 'Nitab4.5_0001597g0020' => 'nta', 'Nitab4.5_0001878g0040' => 'nta', 'Nitab4.5_0001878g0060' => 'nta', 'Nitab4.5_0002838g0100' => 'nta', 'Nitab4.5_0002838g0120' => 'nta', 'Nitab4.5_0004798g0030' => 'nta', 'Nitab4.5_0005420g0010' => 'nta', 'Nitab4.5_0005507g0010' => 'nta', 'Nitab4.5_0005574g0020' => 'nta', 'Nitab4.5_0005838g0010' => 'nta', 'Nitab4.5_0010580g0020' => 'nta', 'Nn1g02599' => 'nnu', 'Nn1g02608' => 'nnu', 'Nn3g17742' => 'nnu', 'Nn3g19534' => 'nnu', 'Nn3g19535' => 'nnu', 'Oeu008790.1' => 'oeu', 'Oeu008792.1' => 'oeu', 'Oeu032590.1' => 'oeu', 'Oeu035349.1' => 'oeu', 'Oeu049791.1' => 'oeu', 'Os01g0774500' => 'osa', 'Os03g0628800' => 'osa', 'Os03g0798600' => 'osa', 'Os05g0508800' => 'osa', 'Peaxi162Scf00036g02018' => 'pax', 'Peaxi162Scf00578g00032' => 'pax', 'Peaxi162Scf00578g00317' => 'pax', 'Peaxi162Scf00785g00114' => 'pax', 'Peaxi162Scf00813g00119' => 'pax', 'Peaxi162Scf00906g00227' => 'pax', 'PGR004G0875' => 'pgr', 'PGR004G2424' => 'pgr', 'PGR031G1239' => 'pgr', 'PGR031G2474' => 'pgr', 'PGR044G0423' => 'pgr', 'PGSC0003DMG400001128' => 'stu', 'PGSC0003DMG400007336' => 'stu', 'PGSC0003DMG400016318' => 'stu', 'PGSC0003DMG400016319' => 'stu', 'PGSC0003DMG400018074' => 'stu', 'Phvul.001G157700' => 'pvu', 'Phvul.002G148550' => 'pvu', 'Phvul.002G320200' => 'pvu', 'Phvul.003G089200' => 'pvu', 'Phvul.007G126000' => 'pvu', 'Phvul.007G126100' => 'pvu', 'Phvul.007G178000' => 'pvu', 'Phvul.007G178200' => 'pvu', 'Potri.002G043000' => 'ptr', 'Potri.002G043200' => 'ptr', 'Potri.003G123750' => 'ptr', 'Potri.005G055401' => 'ptr', 'Potri.005G219700' => 'ptr', 'Potri.005G220000' => 'ptr', 'Potri.008G161901' => 'ptr', 'Potri.008G162000' => 'ptr', 'Potri.008G162400' => 'ptr', 'Potri.010G076900' => 'ptr', 'Pp3c12_9180' => 'ppa', 'Pp3c13_19770' => 'ppa', 'Pp3c14_22950' => 'ppa', 'Pp3c16_12160' => 'ppa', 'Pp3c27_7820' => 'ppa', 'Pp3c2_3490' => 'ppa', 'Pp3c3_23700' => 'ppa', 'Pp3c3_36520' => 'ppa', 'Pp3c4_15250' => 'ppa', 'PRCOL_00007002' => 'pco', 'Prupe.1G030600' => 'ppe', 'Prupe.1G030700' => 'ppe', 'Prupe.6G345200' => 'ppe', 'Prupe.8G230300' => 'ppe', 'Prupe.8G230500' => 'ppe', 'Psat3g059600' => 'psa', 'Psat5g200920' => 'psa', 'Psat6g056440' => 'psa', 'Psat6g057360' => 'psa', 'Psat6g134120' => 'psa', 'Psat6g134160' => 'psa', 'Psat7g008640' => 'psa', 'Psat7g185240' => 'psa', 'PSO017G1330' => 'pso', 'PSO063G6097' => 'pso', 'PSO170G0835' => 'pso', 'PSO170G2499' => 'pso', 'PSO210G5058' => 'pso', 'PSO210G6154' => 'pso', 'PSO585G0031' => 'pso', 'PSO832G0264' => 'pso', 'PSO832G4288' => 'pso', 'QL03p027355' => 'qlo', 'QL03p027430' => 'qlo', 'QL04p081380' => 'qlo', 'QL06p015642' => 'qlo', 'QL06p015650' => 'qlo', 'QL06p015686' => 'qlo', 'QL12p042927' => 'qlo', 'QL93p1863_0035' => 'qlo', 'RcHm_v2.0_Chr3g0450581' => 'rch', 'RcHm_v2.0_Chr4g0390371' => 'rch', 'RcHm_v2.0_Chr4g0390381' => 'rch', 'RcHm_v2.0_Chr4g0390491' => 'rch', 'RcHm_v2.0_Chr4g0390501' => 'rch', 'RcHm_v2.0_Chr6g0289231' => 'rch', 'Rhsim04G0190400' => 'rsi', 'Rhsim04G0190500' => 'rsi', 'Rhsim04G0190600' => 'rsi', 'Rhsim13G0031400' => 'rsi', 'Rhsim13G0165600' => 'rsi', 'RhsimUnG0114600' => 'rsi', 'RhsimUnG0114700' => 'rsi', 'Sabra02G0034800' => 'sbr', 'Sabra02G0035100' => 'sbr', 'Sabra05G0168600' => 'sbr', 'Sabra05G0168800' => 'sbr', 'Sabra08G0123700' => 'sbr', 'Sabra10G0031900' => 'sbr', 'Sabra13G0039000' => 'sbr', 'SalBow2G0782' => 'sbo', 'SalBow2G1403' => 'sbo', 'SalBow4G0074' => 'sbo', 'SalBow4G2635' => 'sbo', 'SalBow5G3010' => 'sbo', 'Sc05g0000870' => 'sci', 'Sc05g0000890' => 'sci', 'Sc13g0005000' => 'sci', 'Sc13g0005030' => 'sci', 'Sc19g0003790' => 'sci', 'Sc19g0003800' => 'sci', 'Sed0003467' => 'sed', 'Sed0009355' => 'sed', 'Sed0009894' => 'sed', 'Sed0011972' => 'sed', 'Sed0021483' => 'sed', 'Sed0021750' => 'sed', 'Sed0026279' => 'sed', 'SEGI_05312' => 'sgi', 'SEGI_10112' => 'sgi', 'SEGI_15835' => 'sgi', 'SEGI_30386' => 'sgi', 'SEGI_34122' => 'sgi', 'SEGI_35063' => 'sgi', 'SGA_v2.0_scaffold101G29794' => 'sas', 'SGA_v2.0_scaffold1G00573' => 'sas', 'SGA_v2.0_scaffold79G25637' => 'sas', 'SGA_v2.0_scaffold88G27283' => 'sas', 'SGA_v2.0_scaffold88G27285' => 'sas', 'SGA_v2.0_scaffold88G27331' => 'sas', 'SHI09937' => 'shi', 'SMO119G0302' => 'smo', 'SMO137G0231' => 'smo', 'SMO367G1151' => 'smo', 'Solyc02g082000.3' => 'sly', 'Solyc06g031670.3' => 'sly', 'Solyc06g053810.3' => 'sly', 'Solyc07g025457.1' => 'sly', 'Solyc08g059740.1' => 'sly', 'Solyc08g059750.3' => 'sly', 'Solyc09g083370.3' => 'sly', 'Solyc12g038950.3' => 'sly', 'Sopen02g026630' => 'spe', 'Sopen06g018930' => 'spe', 'Sopen06g018940' => 'spe', 'Sopen08g009460' => 'spe', 'Sopen09g032290' => 'spe', 'Sp1g03080' => 'spa', 'Sp1g03090' => 'spa', 'Sp1g05480' => 'spa', 'Sp2g07860' => 'spa', 'Sp2g08430' => 'spa', 'Sp2g08440' => 'spa', 'Sp2g26200' => 'spa', 'Sp4g13170' => 'spa', 'Sp6g33840' => 'spa', 'SpUn1204_0010' => 'spa', 'TAR365G0908' => 'tar', 'TAR381G1270' => 'tar', 'TAR381G1651' => 'tar', 'TAR625G1131' => 'tar', 'TAR633G0962' => 'tar', 'TAR633G1729' => 'tar', 'TAR633G1864' => 'tar', 'TAR636G0221' => 'tar', 'TAR636G0314' => 'tar', 'TAR636G3202' => 'tar', 'THA.LOC104800805' => 'tha', 'THA.LOC104801096' => 'tha', 'THA.LOC104801555' => 'tha', 'THA.LOC104808491' => 'tha', 'THA.LOC104808595' => 'tha', 'THA.LOC104815985' => 'tha', 'THA.LOC104822250' => 'tha', 'THA.LOC104826071' => 'tha', 'Thecc.01G265200' => 'tca', 'Thecc.01G265300' => 'tca', 'Thecc.01G265700' => 'tca', 'Thecc.03G109100' => 'tca', 'Thecc.04G245900' => 'tca', 'Thecc.04G246000' => 'tca', 'Thhalv10003334m.g' => 'esa', 'Thhalv10005508m.g' => 'esa', 'Thhalv10005643m.g' => 'esa', 'Thhalv10007316m.g' => 'esa', 'Thhalv10009006m.g' => 'esa', 'Thhalv10009309m.g' => 'esa', 'Thhalv10014917m.g' => 'esa', 'Thhalv10014919m.g' => 'esa', 'Thhalv10015393m.g' => 'esa', 'Thhalv10016515m.g' => 'esa', 'Thhalv10029242m.g' => 'esa', 'TPR.G16654' => 'tpr', 'TPR.G20589' => 'tpr', 'TPR.G23029' => 'tpr', 'TPR.G27731' => 'tpr', 'TPR.G28889' => 'tpr', 'TPR.G28899' => 'tpr', 'TPR.G30846' => 'tpr', 'TPR.G5452' => 'tpr', 'TPR.G5713' => 'tpr', 'TPR.G9046' => 'tpr', 'TPR.G9061' => 'tpr', 'TWI09G1075' => 'twi', 'TWI12G0806' => 'twi', 'TWI18G0108' => 'twi', 'TWI53G1361' => 'twi', 'TWI73G0185' => 'twi', 'TWI73G0427' => 'twi', 'unitig_37.g12001' => 'ugi', 'unitig_747.g21660' => 'ugi', 'unitig_748.g7232' => 'ugi', 'unitig_748.g7315' => 'ugi', 'unitig_85.g27262' => 'ugi', 'unitig_92.g28220' => 'ugi', 'vmacro02632' => 'vma', 'vmacro08410' => 'vma', 'vmacro08411' => 'vma', 'vmacro15407' => 'vma', 'VMungo0251G3619' => 'vmu', 'VMungo0720G1204' => 'vmu', 'VMungo0720G1918' => 'vmu', 'VMungo0720G2387' => 'vmu', 'VMungo0720G2961' => 'vmu', 'VMungo1215G2154' => 'vmu', 'VMungo1383G2411' => 'vmu', 'Zm00001eb051130' => 'zma', 'Zm00001eb116830' => 'zma', 'Zm00001eb116850' => 'zma', 'Zm00001eb151740' => 'zma', 'Zm00001eb292360' => 'zma', 'Zm00001eb301640' => 'zma' ), 'gf_id' => 'HOM05D000856', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000856' ), 'data_identifier' => 'HOM05D000856', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000856', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p00010' => 'bna', 'A03p04160' => 'bna', 'A03p17160' => 'bna', 'A04p23370' => 'bna', 'A05p14860' => 'bna', 'A08p37020' => 'bna', 'A09p08050' => 'bna', 'A09p66800' => 'bna', 'A09p67940' => 'bna', 'A10p02680' => 'bna', 'A10p05320' => 'bna', 'Aa31LG1G20560' => 'aar', 'Aa31LG1G20610' => 'aar', 'Aa31LG1G7810' => 'aar', 'Aa31LG5G3590' => 'aar', 'Aa31LG5G6140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3819' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4683' => 'aag', 'Actinidia04480' => 'ach', 'Actinidia05466' => 'ach', 'Actinidia08445' => 'ach', 'Actinidia21170' => 'ach', 'Actinidia24812' => 'ach', 'Actinidia24951' => 'ach', 'Actinidia40088' => 'ach', 'Ah.02g111660' => 'amhyb', 'Ah.11g048900' => 'amhyb', 'Ah.11g049910' => 'amhyb', 'AL1G13870' => 'aly', 'AL1G13880' => 'aly', 'AL1G16760' => 'aly', 'AL390U10020' => 'aly', 'AL4G25520' => 'aly', 'AL6G19890' => 'aly', 'AL6G19900' => 'aly', 'AL6G19910' => 'aly', 'AL8G40100' => 'aly', 'Aqoxy2G03562' => 'aox', 'Aqoxy5G00316' => 'aox', 'Aqoxy5G00926' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1628KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1H403S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2FU6SJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.882I6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8YRY2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YN1SN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AF70II' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZA8L1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F916KL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHRD8H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KTZ8QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S22EMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8M29T' => 'arhy', 'AT1G04270' => 'ath', 'AT1G04280' => 'ath', 'AT1G06750' => 'ath', 'AT1G33850' => 'ath', 'AT2G30630' => 'ath', 'AT5G09490' => 'ath', 'AT5G09500' => 'ath', 'AT5G09510' => 'ath', 'AT5G43640' => 'ath', 'AT5G63070' => 'ath', 'ATR0605G315' => 'atr', 'Atru.chr11.175' => 'acertr', 'Atru.chr11.653' => 'acertr', 'Atru.chr3.1616' => 'acertr', 'Atru.chr4.2230' => 'acertr', 'Atru.chr4.2232' => 'acertr', 'Atru.chr5.1598' => 'acertr', 'Atru.chr5.1600' => 'acertr', 'Atru.chr5.2188' => 'acertr', 'AUR62008326' => 'cqu', 'AUR62011922' => 'cqu', 'AUR62011924' => 'cqu', 'AUR62021771' => 'cqu', 'AUR62032237' => 'cqu', 'AUR62032240' => 'cqu', 'BcaB01g05572' => 'bca', 'BcaB02g10337' => 'bca', 'BcaB04g19944' => 'bca', 'BcaB05g21548' => 'bca', 'BcaB05g21549' => 'bca', 'BcaB05g23227' => 'bca', 'BcaB06g26256' => 'bca', 'BcaB06g26257' => 'bca', 'BcaB06g28379' => 'bca', 'BcaC02g11159' => 'bca', 'BcaC03g13258' => 'bca', 'BcaC03g13259' => 'bca', 'BcaC05g24456' => 'bca', 'BcaC05g24457' => 'bca', 'BcaC07g36922' => 'bca', 'BcaC07g36923' => 'bca', 'BcaC07g42050' => 'bca', 'BcaC07g42176' => 'bca', 'BcaC07g42195' => 'bca', 'BcaC07g42196' => 'bca', 'BcaNung06674' => 'bca', 'BolC2t06351H' => 'bol', 'BolC2t06352H' => 'bol', 'BolC3t12993H' => 'bol', 'BolC4t23525H' => 'bol', 'BolC4t27475H' => 'bol', 'BolC5t29025H' => 'bol', 'BolC5t29026H' => 'bol', 'BolC8t46898H' => 'bol', 'BolC8t46899H' => 'bol', 'BolC8t52630H' => 'bol', 'BolC8t52765H' => 'bol', 'BolC9t53824H' => 'bol', 'BraA03t09760Z' => 'bra', 'BraA03t10990Z' => 'bra', 'BraA05t20413Z' => 'bra', 'BraA08t35602Z' => 'bra', 'BraA09t36458Z' => 'bra', 'BraA09t42018Z' => 'bra', 'BraA09t42129Z' => 'bra', 'BraA10t42536Z' => 'bra', 'BraA10t42537Z' => 'bra', 'C01p10690' => 'bna', 'C02p03890' => 'bna', 'C02p03900' => 'bna', 'C03p04620' => 'bna', 'C04p19870' => 'bna', 'C04p59670' => 'bna', 'C05p02460' => 'bna', 'C05p02470' => 'bna', 'C08p00980' => 'bna', 'C08p00990' => 'bna', 'C08p51030' => 'bna', 'C08p52360' => 'bna', 'C09p09120' => 'bna', 'CAN.G19.15' => 'can', 'CAN.G251.10' => 'can', 'CAN.G251.9' => 'can', 'CAN.G398.24' => 'can', 'CAN.G410.32' => 'can', 'CAN.G881.2' => 'can', 'CANSAT01G3025' => 'cansat', 'CANSAT78G1211' => 'cansat', 'CANSAT78G1218' => 'cansat', 'CANSAT78G1521' => 'cansat', 'CANSAT78G1670' => 'cansat', 'CARHR003600' => 'chi', 'CARHR003610' => 'chi', 'CARHR006290' => 'chi', 'CARHR006430' => 'chi', 'CARHR124110' => 'chi', 'CARHR203870' => 'chi', 'CARHR203880' => 'chi', 'CARHR203890' => 'chi', 'CARHR276880' => 'chi', 'Carub.0001s0346' => 'cru', 'Carub.0001s0347' => 'cru', 'Carub.0001s0607' => 'cru', 'Carub.0003s2768' => 'cru', 'Carub.0003s2769' => 'cru', 'Carub.0004s1178' => 'cru', 'Carub.0006s0806' => 'cru', 'Carub.0006s0807' => 'cru', 'Carub.0006s0808' => 'cru', 'Carub.0008s0501' => 'cru', 'Carub.0008s2379' => 'cru', 'Ca_08655_v3' => 'car', 'Ca_08922_v3' => 'car', 'Ca_08923_v3' => 'car', 'Ca_09119_v3' => 'car', 'Ca_09703_v3' => 'car', 'Ca_09705_v3' => 'car', 'Ca_09835_v3' => 'car', 'Ca_26403_v3' => 'car', 'Ca_30719_v3' => 'car', 'CBR_g17958' => 'cbr', 'CBR_g40516' => 'cbr', 'Cc00_g05350' => 'ccan', 'Cc01_g18690' => 'ccan', 'Cc03_g04830' => 'ccan', 'Cc03_g04850' => 'ccan', 'CDE02G4469' => 'cde', 'CDE06G0883' => 'cde', 'CDE06G1295' => 'cde', 'CDE06G1390' => 'cde', 'CDE07G0584' => 'cde', 'CDE07G1084' => 'cde', 'CDE08G1259' => 'cde', 'Cfa002341' => 'cfa', 'Cfa024337' => 'cfa', 'Ciclev10004749m.g' => 'ccl', 'Ciclev10006127m.g' => 'ccl', 'Ciclev10019720m.g' => 'ccl', 'Ciclev10022652m.g' => 'ccl', 'CiPaw.01G190400' => 'cil', 'CiPaw.01G190500' => 'cil', 'CiPaw.02G116400' => 'cil', 'CiPaw.02G116500' => 'cil', 'CiPaw.04G183000' => 'cil', 'CiPaw.04G183300' => 'cil', 'ClCG05G004610' => 'cla', 'ClCG05G004620' => 'cla', 'ClCG06G006730' => 'cla', 'ClCG06G006740' => 'cla', 'ClCG11G003690' => 'cla', 'COL.COLO4_08276' => 'col', 'COL.COLO4_08277' => 'col', 'COL.COLO4_15787' => 'col', 'COL.COLO4_15789' => 'col', 'Cpa.g.c44815' => 'cpa', 'Cpa.g.sc52.144' => 'cpa', 'Cpa.g.sc58.46' => 'cpa', 'Cpa.g.sc58.47' => 'cpa', 'Cre08.g360900' => 'cre', 'CsaV3_2G013030' => 'csa', 'CsaV3_2G013050' => 'csa', 'CsaV3_2G015620' => 'csa', 'CsaV3_3G012590' => 'csa', 'CsaV3_3G012600' => 'csa', 'CSS0001641' => 'camsi', 'CSS0008310' => 'camsi', 'CSS0013011' => 'camsi', 'CSS0017147' => 'camsi', 'CSS0022970' => 'camsi', 'CSS0025655' => 'camsi', 'CSS0028665' => 'camsi', 'CSS0029117' => 'camsi', 'CSS0032024' => 'camsi', 'CSS0039681' => 'camsi', 'CSS0046516' => 'camsi', 'CSS0050307' => 'camsi', 'DCAR_005871' => 'dca', 'DCAR_007342' => 'dca', 'DCAR_024228' => 'dca', 'DCAR_027277' => 'dca', 'DCAR_030718' => 'dca', 'Dinv20287' => 'din', 'Dinv22461' => 'din', 'Dinv22464' => 'din', 'Dinv29912' => 'din', 'Dinv29913' => 'din', 'Dinv34580' => 'din', 'Dinv34582' => 'din', 'Dinv44632' => 'din', 'Duzib052G0266' => 'dzi', 'Duzib133G0907' => 'dzi', 'Duzib133G1034' => 'dzi', 'Duzib138G0207' => 'dzi', 'Duzib138G0491' => 'dzi', 'Duzib151G0812' => 'dzi', 'Duzib151G1166' => 'dzi', 'Duzib168G0192' => 'dzi', 'Duzib211G0077' => 'dzi', 'Duzib212G0429' => 'dzi', 'Duzib212G0472' => 'dzi', 'ECA233G2617' => 'eca', 'ECA236G4188' => 'eca', 'ECA240G0936' => 'eca', 'ECA240G1129' => 'eca', 'ECA247G0623' => 'eca', 'EL10Ac5g10451' => 'bvu', 'EL10Ac5g10453' => 'bvu', 'EL10Ac5g10894' => 'bvu', 'Eucgr.H00192' => 'egr', 'Eucgr.H00193' => 'egr', 'Eucgr.H00194' => 'egr', 'Eucgr.J01562' => 'egr', 'Eucgr.K03301' => 'egr', 'FAN02G0632' => 'fan', 'FAN05G5378' => 'fan', 'FAN09G3247' => 'fan', 'FAN12G0435' => 'fan', 'FAN12G2426' => 'fan', 'FAN14G1707' => 'fan', 'FAN14G4725' => 'fan', 'FAN15G2071' => 'fan', 'FAN17G3065' => 'fan', 'FAN19G1376' => 'fan', 'FAN20G0354' => 'fan', 'FAN20G2429' => 'fan', 'FAN20G2658' => 'fan', 'FAN24G2343' => 'fan', 'FAN27G2362' => 'fan', 'FAN28G1765' => 'fan', 'FvH4_1g16020' => 'fve', 'FvH4_2g04890' => 'fve', 'FvH4_2g22270' => 'fve', 'FvH4_4g02630' => 'fve', 'FvH4_4g02640' => 'fve', 'FvH4_6g02650' => 'fve', 'Glyma.02G140600' => 'gma', 'Glyma.03G159900' => 'gma', 'Glyma.05G234800' => 'gma', 'Glyma.07G269600' => 'gma', 'Glyma.08G042300' => 'gma', 'Glyma.10G033500' => 'gma', 'Glyma.10G185200' => 'gma', 'Glyma.17G004300' => 'gma', 'Glyma.19G161900' => 'gma', 'Glyma.20G205100' => 'gma', 'Glyma.20G205200' => 'gma', 'Gohir.A01G139101' => 'ghi', 'Gohir.A02G035600' => 'ghi', 'Gohir.A02G117901' => 'ghi', 'Gohir.A07G210100' => 'ghi', 'Gohir.A07G210200' => 'ghi', 'Gohir.A08G061100' => 'ghi', 'Gohir.A09G223000' => 'ghi', 'Gohir.A09G223100' => 'ghi', 'Gohir.A10G113900' => 'ghi', 'Gohir.A10G114000' => 'ghi', 'Gohir.D02G042300' => 'ghi', 'Gohir.D07G216100' => 'ghi', 'Gohir.D07G216200' => 'ghi', 'Gohir.D08G070400' => 'ghi', 'Gohir.D09G225000' => 'ghi', 'Gohir.D09G225100' => 'ghi', 'Gohir.D10G152300' => 'ghi', 'Gohir.D10G153200' => 'ghi', 'Gohir.D11G133701' => 'ghi', 'Gorai.004G074100' => 'gra', 'Gorai.005G046800' => 'gra', 'Gorai.006G246500' => 'gra', 'Gorai.006G246600' => 'gra', 'Gorai.007G142900' => 'gra', 'Gorai.011G171000' => 'gra', 'Gorai.011G171100' => 'gra', 'Gorai.013G104300' => 'gra', 'Gorai.013G104400' => 'gra', 'GSVIVG01000754001' => 'vvi', 'GSVIVG01000756001' => 'vvi', 'GSVIVG01010903001' => 'vvi', 'GSVIVG01017623001' => 'vvi', 'GSVIVG01018113001' => 'vvi', 'GSVIVG01018116001' => 'vvi', 'GSVIVG01018118001' => 'vvi', 'HanXRQChr03g0076211' => 'han', 'HanXRQChr03g0092431' => 'han', 'HanXRQChr03g0092441' => 'han', 'HanXRQChr03g0092591' => 'han', 'HanXRQChr03g0092671' => 'han', 'HanXRQChr03g0092681' => 'han', 'HanXRQChr03g0092691' => 'han', 'HanXRQChr03g0092701' => 'han', 'HanXRQChr03g0092721' => 'han', 'HanXRQChr03g0092731' => 'han', 'HanXRQChr04g0113681' => 'han', 'HanXRQChr10g0281371' => 'han', 'HanXRQChr11g0337141' => 'han', 'HanXRQChr13g0424521' => 'han', 'HanXRQChr13g0424531' => 'han', 'HanXRQChr13g0424541' => 'han', 'HanXRQChr16g0498221' => 'han', 'Haze_04377' => 'cav', 'Haze_11298' => 'cav', 'Haze_24547' => 'cav', 'Haze_24550' => 'cav', 'Haze_26587' => 'cav', 'Hma1.2p1_0650F.1_g195410' => 'hma', 'Hma1.2p1_0893F.1_g233470' => 'hma', 'HPP92_006508' => 'vpl', 'HPP92_024780' => 'vpl', 'Hund02688' => 'sun', 'Hund09380' => 'sun', 'Hund09381' => 'sun', 'Hund09832' => 'sun', 'Hund09833' => 'sun', 'Hund11351' => 'sun', 'Hund11513' => 'sun', 'Lalb_Chr06g0162591' => 'lal', 'Lalb_Chr06g0162601' => 'lal', 'Lalb_Chr06g0169321' => 'lal', 'Lalb_Chr09g0330951' => 'lal', 'Lalb_Chr16g0387631' => 'lal', 'Lalb_Chr21g0306241' => 'lal', 'Lalb_Chr25g0290051' => 'lal', 'Lalb_Chr25g0290061' => 'lal', 'Lalb_Chr25g0290071' => 'lal', 'Lj1g0003876' => 'lja', 'Lj1P1207T36' => 'lonja', 'Lj2C1156G12' => 'lonja', 'Lj3A793G39' => 'lonja', 'Lj3C580G2' => 'lonja', 'Lj3C780G2' => 'lonja', 'Lj3C780T4' => 'lonja', 'Lj3C793G9' => 'lonja', 'Lj4g0012960' => 'lja', 'Lj5g0021252' => 'lja', 'Lj5g0021484' => 'lja', 'Lj5g0024528' => 'lja', 'Lj6A399T12' => 'lonja', 'Lj6A656G65' => 'lonja', 'Lsat_1_v5_gn_3_125500' => 'lsa', 'Lsat_1_v5_gn_3_125540' => 'lsa', 'Lsat_1_v5_gn_5_72701' => 'lsa', 'Lsat_1_v5_gn_8_91560' => 'lsa', 'Lsat_1_v5_gn_9_9640' => 'lsa', 'Manes.01G200600' => 'mes', 'Manes.01G200700' => 'mes', 'Manes.03G168900' => 'mes', 'Manes.03G169000' => 'mes', 'Manes.05G085801' => 'mes', 'Manes.05G086200' => 'mes', 'Manes.15G036700' => 'mes', 'Manes.15G036900' => 'mes', 'Mapoly0004s0172' => 'mpo', 'Mapoly0023s0001' => 'mpo', 'Mapoly0142s0012' => 'mpo', 'MBI01_g32854_MAGBIO' => 'mbi', 'MBI11_g24427_MAGBIO' => 'mbi', 'MBI11_g47319_MAGBIO' => 'mbi', 'MCO01G433' => 'mco', 'MD00G1187800' => 'mdo', 'MD04G1226500' => 'mdo', 'MD05G1203900' => 'mdo', 'MD10G1191100' => 'mdo', 'MD12G1243500' => 'mdo', 'MD13G1207000' => 'mdo', 'MD13G1207100' => 'mdo', 'MD16G1208600' => 'mdo', 'Medtr1g050352' => 'mtr', 'Medtr1g070385' => 'mtr', 'Medtr1g070450' => 'mtr', 'Medtr1g075200' => 'mtr', 'Medtr1g075250' => 'mtr', 'Medtr1g075260' => 'mtr', 'Medtr1g475250' => 'mtr', 'Medtr4g075450' => 'mtr', 'Medtr7g096300' => 'mtr', 'Medtr8g105110' => 'mtr', 'MELO3C006470.2' => 'cme', 'MELO3C006471.2' => 'cme', 'MELO3C020772.2' => 'cme', 'MELO3C026780.2' => 'cme', 'MELO3C026781.2' => 'cme', 'Migut.D00390' => 'egut', 'Migut.G00435' => 'egut', 'Migut.G00436' => 'egut', 'Migut.G00718' => 'egut', 'MSTRG.21891' => 'ama', 'MSTRG.26910' => 'ama', 'MSTRG.4099' => 'ama', 'MSTRG.9925' => 'ama', 'Nitab4.5_0000165g0010' => 'nta', 'Nitab4.5_0000209g0180' => 'nta', 'Nitab4.5_0000244g0440' => 'nta', 'Nitab4.5_0000525g0220' => 'nta', 'Nitab4.5_0001597g0020' => 'nta', 'Nitab4.5_0001878g0040' => 'nta', 'Nitab4.5_0001878g0060' => 'nta', 'Nitab4.5_0002838g0100' => 'nta', 'Nitab4.5_0002838g0120' => 'nta', 'Nitab4.5_0004798g0030' => 'nta', 'Nitab4.5_0005420g0010' => 'nta', 'Nitab4.5_0005507g0010' => 'nta', 'Nitab4.5_0005574g0020' => 'nta', 'Nitab4.5_0005838g0010' => 'nta', 'Nitab4.5_0010580g0020' => 'nta', 'Nn1g02599' => 'nnu', 'Nn1g02608' => 'nnu', 'Nn3g17742' => 'nnu', 'Nn3g19534' => 'nnu', 'Nn3g19535' => 'nnu', 'Oeu008790.1' => 'oeu', 'Oeu008792.1' => 'oeu', 'Oeu032590.1' => 'oeu', 'Oeu035349.1' => 'oeu', 'Oeu049791.1' => 'oeu', 'Os01g0774500' => 'osa', 'Os03g0628800' => 'osa', 'Os03g0798600' => 'osa', 'Os05g0508800' => 'osa', 'Peaxi162Scf00036g02018' => 'pax', 'Peaxi162Scf00578g00032' => 'pax', 'Peaxi162Scf00578g00317' => 'pax', 'Peaxi162Scf00785g00114' => 'pax', 'Peaxi162Scf00813g00119' => 'pax', 'Peaxi162Scf00906g00227' => 'pax', 'PGR004G0875' => 'pgr', 'PGR004G2424' => 'pgr', 'PGR031G1239' => 'pgr', 'PGR031G2474' => 'pgr', 'PGR044G0423' => 'pgr', 'PGSC0003DMG400001128' => 'stu', 'PGSC0003DMG400007336' => 'stu', 'PGSC0003DMG400016318' => 'stu', 'PGSC0003DMG400016319' => 'stu', 'PGSC0003DMG400018074' => 'stu', 'Phvul.001G157700' => 'pvu', 'Phvul.002G148550' => 'pvu', 'Phvul.002G320200' => 'pvu', 'Phvul.003G089200' => 'pvu', 'Phvul.007G126000' => 'pvu', 'Phvul.007G126100' => 'pvu', 'Phvul.007G178000' => 'pvu', 'Phvul.007G178200' => 'pvu', 'Potri.002G043000' => 'ptr', 'Potri.002G043200' => 'ptr', 'Potri.003G123750' => 'ptr', 'Potri.005G055401' => 'ptr', 'Potri.005G219700' => 'ptr', 'Potri.005G220000' => 'ptr', 'Potri.008G161901' => 'ptr', 'Potri.008G162000' => 'ptr', 'Potri.008G162400' => 'ptr', 'Potri.010G076900' => 'ptr', 'Pp3c12_9180' => 'ppa', 'Pp3c13_19770' => 'ppa', 'Pp3c14_22950' => 'ppa', 'Pp3c16_12160' => 'ppa', 'Pp3c27_7820' => 'ppa', 'Pp3c2_3490' => 'ppa', 'Pp3c3_23700' => 'ppa', 'Pp3c3_36520' => 'ppa', 'Pp3c4_15250' => 'ppa', 'PRCOL_00007002' => 'pco', 'Prupe.1G030600' => 'ppe', 'Prupe.1G030700' => 'ppe', 'Prupe.6G345200' => 'ppe', 'Prupe.8G230300' => 'ppe', 'Prupe.8G230500' => 'ppe', 'Psat3g059600' => 'psa', 'Psat5g200920' => 'psa', 'Psat6g056440' => 'psa', 'Psat6g057360' => 'psa', 'Psat6g134120' => 'psa', 'Psat6g134160' => 'psa', 'Psat7g008640' => 'psa', 'Psat7g185240' => 'psa', 'PSO017G1330' => 'pso', 'PSO063G6097' => 'pso', 'PSO170G0835' => 'pso', 'PSO170G2499' => 'pso', 'PSO210G5058' => 'pso', 'PSO210G6154' => 'pso', 'PSO585G0031' => 'pso', 'PSO832G0264' => 'pso', 'PSO832G4288' => 'pso', 'QL03p027355' => 'qlo', 'QL03p027430' => 'qlo', 'QL04p081380' => 'qlo', 'QL06p015642' => 'qlo', 'QL06p015650' => 'qlo', 'QL06p015686' => 'qlo', 'QL12p042927' => 'qlo', 'QL93p1863_0035' => 'qlo', 'RcHm_v2.0_Chr3g0450581' => 'rch', 'RcHm_v2.0_Chr4g0390371' => 'rch', 'RcHm_v2.0_Chr4g0390381' => 'rch', 'RcHm_v2.0_Chr4g0390491' => 'rch', 'RcHm_v2.0_Chr4g0390501' => 'rch', 'RcHm_v2.0_Chr6g0289231' => 'rch', 'Rhsim04G0190400' => 'rsi', 'Rhsim04G0190500' => 'rsi', 'Rhsim04G0190600' => 'rsi', 'Rhsim13G0031400' => 'rsi', 'Rhsim13G0165600' => 'rsi', 'RhsimUnG0114600' => 'rsi', 'RhsimUnG0114700' => 'rsi', 'Sabra02G0034800' => 'sbr', 'Sabra02G0035100' => 'sbr', 'Sabra05G0168600' => 'sbr', 'Sabra05G0168800' => 'sbr', 'Sabra08G0123700' => 'sbr', 'Sabra10G0031900' => 'sbr', 'Sabra13G0039000' => 'sbr', 'SalBow2G0782' => 'sbo', 'SalBow2G1403' => 'sbo', 'SalBow4G0074' => 'sbo', 'SalBow4G2635' => 'sbo', 'SalBow5G3010' => 'sbo', 'Sc05g0000870' => 'sci', 'Sc05g0000890' => 'sci', 'Sc13g0005000' => 'sci', 'Sc13g0005030' => 'sci', 'Sc19g0003790' => 'sci', 'Sc19g0003800' => 'sci', 'Sed0003467' => 'sed', 'Sed0009355' => 'sed', 'Sed0009894' => 'sed', 'Sed0011972' => 'sed', 'Sed0021483' => 'sed', 'Sed0021750' => 'sed', 'Sed0026279' => 'sed', 'SEGI_05312' => 'sgi', 'SEGI_10112' => 'sgi', 'SEGI_15835' => 'sgi', 'SEGI_30386' => 'sgi', 'SEGI_34122' => 'sgi', 'SEGI_35063' => 'sgi', 'SGA_v2.0_scaffold101G29794' => 'sas', 'SGA_v2.0_scaffold1G00573' => 'sas', 'SGA_v2.0_scaffold79G25637' => 'sas', 'SGA_v2.0_scaffold88G27283' => 'sas', 'SGA_v2.0_scaffold88G27285' => 'sas', 'SGA_v2.0_scaffold88G27331' => 'sas', 'SHI09937' => 'shi', 'SMO119G0302' => 'smo', 'SMO137G0231' => 'smo', 'SMO367G1151' => 'smo', 'Solyc02g082000.3' => 'sly', 'Solyc06g031670.3' => 'sly', 'Solyc06g053810.3' => 'sly', 'Solyc07g025457.1' => 'sly', 'Solyc08g059740.1' => 'sly', 'Solyc08g059750.3' => 'sly', 'Solyc09g083370.3' => 'sly', 'Solyc12g038950.3' => 'sly', 'Sopen02g026630' => 'spe', 'Sopen06g018930' => 'spe', 'Sopen06g018940' => 'spe', 'Sopen08g009460' => 'spe', 'Sopen09g032290' => 'spe', 'Sp1g03080' => 'spa', 'Sp1g03090' => 'spa', 'Sp1g05480' => 'spa', 'Sp2g07860' => 'spa', 'Sp2g08430' => 'spa', 'Sp2g08440' => 'spa', 'Sp2g26200' => 'spa', 'Sp4g13170' => 'spa', 'Sp6g33840' => 'spa', 'SpUn1204_0010' => 'spa', 'TAR365G0908' => 'tar', 'TAR381G1270' => 'tar', 'TAR381G1651' => 'tar', 'TAR625G1131' => 'tar', 'TAR633G0962' => 'tar', 'TAR633G1729' => 'tar', 'TAR633G1864' => 'tar', 'TAR636G0221' => 'tar', 'TAR636G0314' => 'tar', 'TAR636G3202' => 'tar', 'THA.LOC104800805' => 'tha', 'THA.LOC104801096' => 'tha', 'THA.LOC104801555' => 'tha', 'THA.LOC104808491' => 'tha', 'THA.LOC104808595' => 'tha', 'THA.LOC104815985' => 'tha', 'THA.LOC104822250' => 'tha', 'THA.LOC104826071' => 'tha', 'Thecc.01G265200' => 'tca', 'Thecc.01G265300' => 'tca', 'Thecc.01G265700' => 'tca', 'Thecc.03G109100' => 'tca', 'Thecc.04G245900' => 'tca', 'Thecc.04G246000' => 'tca', 'Thhalv10003334m.g' => 'esa', 'Thhalv10005508m.g' => 'esa', 'Thhalv10005643m.g' => 'esa', 'Thhalv10007316m.g' => 'esa', 'Thhalv10009006m.g' => 'esa', 'Thhalv10009309m.g' => 'esa', 'Thhalv10014917m.g' => 'esa', 'Thhalv10014919m.g' => 'esa', 'Thhalv10015393m.g' => 'esa', 'Thhalv10016515m.g' => 'esa', 'Thhalv10029242m.g' => 'esa', 'TPR.G16654' => 'tpr', 'TPR.G20589' => 'tpr', 'TPR.G23029' => 'tpr', 'TPR.G27731' => 'tpr', 'TPR.G28889' => 'tpr', 'TPR.G28899' => 'tpr', 'TPR.G30846' => 'tpr', 'TPR.G5452' => 'tpr', 'TPR.G5713' => 'tpr', 'TPR.G9046' => 'tpr', 'TPR.G9061' => 'tpr', 'TWI09G1075' => 'twi', 'TWI12G0806' => 'twi', 'TWI18G0108' => 'twi', 'TWI53G1361' => 'twi', 'TWI73G0185' => 'twi', 'TWI73G0427' => 'twi', 'unitig_37.g12001' => 'ugi', 'unitig_747.g21660' => 'ugi', 'unitig_748.g7232' => 'ugi', 'unitig_748.g7315' => 'ugi', 'unitig_85.g27262' => 'ugi', 'unitig_92.g28220' => 'ugi', 'vmacro02632' => 'vma', 'vmacro08410' => 'vma', 'vmacro08411' => 'vma', 'vmacro15407' => 'vma', 'VMungo0251G3619' => 'vmu', 'VMungo0720G1204' => 'vmu', 'VMungo0720G1918' => 'vmu', 'VMungo0720G2387' => 'vmu', 'VMungo0720G2961' => 'vmu', 'VMungo1215G2154' => 'vmu', 'VMungo1383G2411' => 'vmu', 'Zm00001eb051130' => 'zma', 'Zm00001eb116830' => 'zma', 'Zm00001eb116850' => 'zma', 'Zm00001eb151740' => 'zma', 'Zm00001eb292360' => 'zma', 'Zm00001eb301640' => 'zma' ) $gf_id = 'HOM05D000856' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000856' ) $data_identifier = 'HOM05D000856' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 13, 'ath' => (int) 10, 'atr' => (int) 1, 'acertr' => (int) 8, 'cqu' => (int) 6, 'bca' => (int) 21, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 11, 'car' => (int) 9, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 8, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 5, 'fan' => (int) 16, 'fve' => (int) 6, 'gma' => (int) 11, 'ghi' => (int) 19, 'gra' => (int) 9, 'vvi' => (int) 7, 'han' => (int) 17, 'cav' => (int) 5, 'hma' => (int) 2, 'vpl' => (int) 2, 'sun' => (int) 7, 'lal' => (int) 9, 'lja' => (int) 5, 'lonja' => (int) 9, 'lsa' => (int) 5, 'mes' => (int) 8, 'mpo' => (int) 3, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 10, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 15, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 9, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 9, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 6, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 5, 'spa' => (int) 10, 'tar' => (int) 10, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 11, 'tpr' => (int) 11, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 4, 'vmu' => (int) 7, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb301640' $species_info = array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ) $local_species = 'cil' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000856', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p00010' => 'bna', 'A03p04160' => 'bna', 'A03p17160' => 'bna', 'A04p23370' => 'bna', 'A05p14860' => 'bna', 'A08p37020' => 'bna', 'A09p08050' => 'bna', 'A09p66800' => 'bna', 'A09p67940' => 'bna', 'A10p02680' => 'bna', 'A10p05320' => 'bna', 'Aa31LG1G20560' => 'aar', 'Aa31LG1G20610' => 'aar', 'Aa31LG1G7810' => 'aar', 'Aa31LG5G3590' => 'aar', 'Aa31LG5G6140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3819' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4683' => 'aag', 'Actinidia04480' => 'ach', 'Actinidia05466' => 'ach', 'Actinidia08445' => 'ach', 'Actinidia21170' => 'ach', 'Actinidia24812' => 'ach', 'Actinidia24951' => 'ach', 'Actinidia40088' => 'ach', 'Ah.02g111660' => 'amhyb', 'Ah.11g048900' => 'amhyb', 'Ah.11g049910' => 'amhyb', 'AL1G13870' => 'aly', 'AL1G13880' => 'aly', 'AL1G16760' => 'aly', 'AL390U10020' => 'aly', 'AL4G25520' => 'aly', 'AL6G19890' => 'aly', 'AL6G19900' => 'aly', 'AL6G19910' => 'aly', 'AL8G40100' => 'aly', 'Aqoxy2G03562' => 'aox', 'Aqoxy5G00316' => 'aox', 'Aqoxy5G00926' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1628KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1H403S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2FU6SJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.882I6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8YRY2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YN1SN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AF70II' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZA8L1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F916KL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHRD8H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KTZ8QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S22EMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8M29T' => 'arhy', 'AT1G04270' => 'ath', 'AT1G04280' => 'ath', 'AT1G06750' => 'ath', 'AT1G33850' => 'ath', 'AT2G30630' => 'ath', 'AT5G09490' => 'ath', 'AT5G09500' => 'ath', 'AT5G09510' => 'ath', 'AT5G43640' => 'ath', 'AT5G63070' => 'ath', 'ATR0605G315' => 'atr', 'Atru.chr11.175' => 'acertr', 'Atru.chr11.653' => 'acertr', 'Atru.chr3.1616' => 'acertr', 'Atru.chr4.2230' => 'acertr', 'Atru.chr4.2232' => 'acertr', 'Atru.chr5.1598' => 'acertr', 'Atru.chr5.1600' => 'acertr', 'Atru.chr5.2188' => 'acertr', 'AUR62008326' => 'cqu', 'AUR62011922' => 'cqu', 'AUR62011924' => 'cqu', 'AUR62021771' => 'cqu', 'AUR62032237' => 'cqu', 'AUR62032240' => 'cqu', 'BcaB01g05572' => 'bca', 'BcaB02g10337' => 'bca', 'BcaB04g19944' => 'bca', 'BcaB05g21548' => 'bca', 'BcaB05g21549' => 'bca', 'BcaB05g23227' => 'bca', 'BcaB06g26256' => 'bca', 'BcaB06g26257' => 'bca', 'BcaB06g28379' => 'bca', 'BcaC02g11159' => 'bca', 'BcaC03g13258' => 'bca', 'BcaC03g13259' => 'bca', 'BcaC05g24456' => 'bca', 'BcaC05g24457' => 'bca', 'BcaC07g36922' => 'bca', 'BcaC07g36923' => 'bca', 'BcaC07g42050' => 'bca', 'BcaC07g42176' => 'bca', 'BcaC07g42195' => 'bca', 'BcaC07g42196' => 'bca', 'BcaNung06674' => 'bca', 'BolC2t06351H' => 'bol', 'BolC2t06352H' => 'bol', 'BolC3t12993H' => 'bol', 'BolC4t23525H' => 'bol', 'BolC4t27475H' => 'bol', 'BolC5t29025H' => 'bol', 'BolC5t29026H' => 'bol', 'BolC8t46898H' => 'bol', 'BolC8t46899H' => 'bol', 'BolC8t52630H' => 'bol', 'BolC8t52765H' => 'bol', 'BolC9t53824H' => 'bol', 'BraA03t09760Z' => 'bra', 'BraA03t10990Z' => 'bra', 'BraA05t20413Z' => 'bra', 'BraA08t35602Z' => 'bra', 'BraA09t36458Z' => 'bra', 'BraA09t42018Z' => 'bra', 'BraA09t42129Z' => 'bra', 'BraA10t42536Z' => 'bra', 'BraA10t42537Z' => 'bra', 'C01p10690' => 'bna', 'C02p03890' => 'bna', 'C02p03900' => 'bna', 'C03p04620' => 'bna', 'C04p19870' => 'bna', 'C04p59670' => 'bna', 'C05p02460' => 'bna', 'C05p02470' => 'bna', 'C08p00980' => 'bna', 'C08p00990' => 'bna', 'C08p51030' => 'bna', 'C08p52360' => 'bna', 'C09p09120' => 'bna', 'CAN.G19.15' => 'can', 'CAN.G251.10' => 'can', 'CAN.G251.9' => 'can', 'CAN.G398.24' => 'can', 'CAN.G410.32' => 'can', 'CAN.G881.2' => 'can', 'CANSAT01G3025' => 'cansat', 'CANSAT78G1211' => 'cansat', 'CANSAT78G1218' => 'cansat', 'CANSAT78G1521' => 'cansat', 'CANSAT78G1670' => 'cansat', 'CARHR003600' => 'chi', 'CARHR003610' => 'chi', 'CARHR006290' => 'chi', 'CARHR006430' => 'chi', 'CARHR124110' => 'chi', 'CARHR203870' => 'chi', 'CARHR203880' => 'chi', 'CARHR203890' => 'chi', 'CARHR276880' => 'chi', 'Carub.0001s0346' => 'cru', 'Carub.0001s0347' => 'cru', 'Carub.0001s0607' => 'cru', 'Carub.0003s2768' => 'cru', 'Carub.0003s2769' => 'cru', 'Carub.0004s1178' => 'cru', 'Carub.0006s0806' => 'cru', 'Carub.0006s0807' => 'cru', 'Carub.0006s0808' => 'cru', 'Carub.0008s0501' => 'cru', 'Carub.0008s2379' => 'cru', 'Ca_08655_v3' => 'car', 'Ca_08922_v3' => 'car', 'Ca_08923_v3' => 'car', 'Ca_09119_v3' => 'car', 'Ca_09703_v3' => 'car', 'Ca_09705_v3' => 'car', 'Ca_09835_v3' => 'car', 'Ca_26403_v3' => 'car', 'Ca_30719_v3' => 'car', 'CBR_g17958' => 'cbr', 'CBR_g40516' => 'cbr', 'Cc00_g05350' => 'ccan', 'Cc01_g18690' => 'ccan', 'Cc03_g04830' => 'ccan', 'Cc03_g04850' => 'ccan', 'CDE02G4469' => 'cde', 'CDE06G0883' => 'cde', 'CDE06G1295' => 'cde', 'CDE06G1390' => 'cde', 'CDE07G0584' => 'cde', 'CDE07G1084' => 'cde', 'CDE08G1259' => 'cde', 'Cfa002341' => 'cfa', 'Cfa024337' => 'cfa', 'Ciclev10004749m.g' => 'ccl', 'Ciclev10006127m.g' => 'ccl', 'Ciclev10019720m.g' => 'ccl', 'Ciclev10022652m.g' => 'ccl', 'CiPaw.01G190400' => 'cil', 'CiPaw.01G190500' => 'cil', 'CiPaw.02G116400' => 'cil', 'CiPaw.02G116500' => 'cil', 'CiPaw.04G183000' => 'cil', 'CiPaw.04G183300' => 'cil', 'ClCG05G004610' => 'cla', 'ClCG05G004620' => 'cla', 'ClCG06G006730' => 'cla', 'ClCG06G006740' => 'cla', 'ClCG11G003690' => 'cla', 'COL.COLO4_08276' => 'col', 'COL.COLO4_08277' => 'col', 'COL.COLO4_15787' => 'col', 'COL.COLO4_15789' => 'col', 'Cpa.g.c44815' => 'cpa', 'Cpa.g.sc52.144' => 'cpa', 'Cpa.g.sc58.46' => 'cpa', 'Cpa.g.sc58.47' => 'cpa', 'Cre08.g360900' => 'cre', 'CsaV3_2G013030' => 'csa', 'CsaV3_2G013050' => 'csa', 'CsaV3_2G015620' => 'csa', 'CsaV3_3G012590' => 'csa', 'CsaV3_3G012600' => 'csa', 'CSS0001641' => 'camsi', 'CSS0008310' => 'camsi', 'CSS0013011' => 'camsi', 'CSS0017147' => 'camsi', 'CSS0022970' => 'camsi', 'CSS0025655' => 'camsi', 'CSS0028665' => 'camsi', 'CSS0029117' => 'camsi', 'CSS0032024' => 'camsi', 'CSS0039681' => 'camsi', 'CSS0046516' => 'camsi', 'CSS0050307' => 'camsi', 'DCAR_005871' => 'dca', 'DCAR_007342' => 'dca', 'DCAR_024228' => 'dca', 'DCAR_027277' => 'dca', 'DCAR_030718' => 'dca', 'Dinv20287' => 'din', 'Dinv22461' => 'din', 'Dinv22464' => 'din', 'Dinv29912' => 'din', 'Dinv29913' => 'din', 'Dinv34580' => 'din', 'Dinv34582' => 'din', 'Dinv44632' => 'din', 'Duzib052G0266' => 'dzi', 'Duzib133G0907' => 'dzi', 'Duzib133G1034' => 'dzi', 'Duzib138G0207' => 'dzi', 'Duzib138G0491' => 'dzi', 'Duzib151G0812' => 'dzi', 'Duzib151G1166' => 'dzi', 'Duzib168G0192' => 'dzi', 'Duzib211G0077' => 'dzi', 'Duzib212G0429' => 'dzi', 'Duzib212G0472' => 'dzi', 'ECA233G2617' => 'eca', 'ECA236G4188' => 'eca', 'ECA240G0936' => 'eca', 'ECA240G1129' => 'eca', 'ECA247G0623' => 'eca', 'EL10Ac5g10451' => 'bvu', 'EL10Ac5g10453' => 'bvu', 'EL10Ac5g10894' => 'bvu', 'Eucgr.H00192' => 'egr', 'Eucgr.H00193' => 'egr', 'Eucgr.H00194' => 'egr', 'Eucgr.J01562' => 'egr', 'Eucgr.K03301' => 'egr', 'FAN02G0632' => 'fan', 'FAN05G5378' => 'fan', 'FAN09G3247' => 'fan', 'FAN12G0435' => 'fan', 'FAN12G2426' => 'fan', 'FAN14G1707' => 'fan', 'FAN14G4725' => 'fan', 'FAN15G2071' => 'fan', 'FAN17G3065' => 'fan', 'FAN19G1376' => 'fan', 'FAN20G0354' => 'fan', 'FAN20G2429' => 'fan', 'FAN20G2658' => 'fan', 'FAN24G2343' => 'fan', 'FAN27G2362' => 'fan', 'FAN28G1765' => 'fan', 'FvH4_1g16020' => 'fve', 'FvH4_2g04890' => 'fve', 'FvH4_2g22270' => 'fve', 'FvH4_4g02630' => 'fve', 'FvH4_4g02640' => 'fve', 'FvH4_6g02650' => 'fve', 'Glyma.02G140600' => 'gma', 'Glyma.03G159900' => 'gma', 'Glyma.05G234800' => 'gma', 'Glyma.07G269600' => 'gma', 'Glyma.08G042300' => 'gma', 'Glyma.10G033500' => 'gma', 'Glyma.10G185200' => 'gma', 'Glyma.17G004300' => 'gma', 'Glyma.19G161900' => 'gma', 'Glyma.20G205100' => 'gma', 'Glyma.20G205200' => 'gma', 'Gohir.A01G139101' => 'ghi', 'Gohir.A02G035600' => 'ghi', 'Gohir.A02G117901' => 'ghi', 'Gohir.A07G210100' => 'ghi', 'Gohir.A07G210200' => 'ghi', 'Gohir.A08G061100' => 'ghi', 'Gohir.A09G223000' => 'ghi', 'Gohir.A09G223100' => 'ghi', 'Gohir.A10G113900' => 'ghi', 'Gohir.A10G114000' => 'ghi', 'Gohir.D02G042300' => 'ghi', 'Gohir.D07G216100' => 'ghi', 'Gohir.D07G216200' => 'ghi', 'Gohir.D08G070400' => 'ghi', 'Gohir.D09G225000' => 'ghi', 'Gohir.D09G225100' => 'ghi', 'Gohir.D10G152300' => 'ghi', 'Gohir.D10G153200' => 'ghi', 'Gohir.D11G133701' => 'ghi', 'Gorai.004G074100' => 'gra', 'Gorai.005G046800' => 'gra', 'Gorai.006G246500' => 'gra', 'Gorai.006G246600' => 'gra', 'Gorai.007G142900' => 'gra', 'Gorai.011G171000' => 'gra', 'Gorai.011G171100' => 'gra', 'Gorai.013G104300' => 'gra', 'Gorai.013G104400' => 'gra', 'GSVIVG01000754001' => 'vvi', 'GSVIVG01000756001' => 'vvi', 'GSVIVG01010903001' => 'vvi', 'GSVIVG01017623001' => 'vvi', 'GSVIVG01018113001' => 'vvi', 'GSVIVG01018116001' => 'vvi', 'GSVIVG01018118001' => 'vvi', 'HanXRQChr03g0076211' => 'han', 'HanXRQChr03g0092431' => 'han', 'HanXRQChr03g0092441' => 'han', 'HanXRQChr03g0092591' => 'han', 'HanXRQChr03g0092671' => 'han', 'HanXRQChr03g0092681' => 'han', 'HanXRQChr03g0092691' => 'han', 'HanXRQChr03g0092701' => 'han', 'HanXRQChr03g0092721' => 'han', 'HanXRQChr03g0092731' => 'han', 'HanXRQChr04g0113681' => 'han', 'HanXRQChr10g0281371' => 'han', 'HanXRQChr11g0337141' => 'han', 'HanXRQChr13g0424521' => 'han', 'HanXRQChr13g0424531' => 'han', 'HanXRQChr13g0424541' => 'han', 'HanXRQChr16g0498221' => 'han', 'Haze_04377' => 'cav', 'Haze_11298' => 'cav', 'Haze_24547' => 'cav', 'Haze_24550' => 'cav', 'Haze_26587' => 'cav', 'Hma1.2p1_0650F.1_g195410' => 'hma', 'Hma1.2p1_0893F.1_g233470' => 'hma', 'HPP92_006508' => 'vpl', 'HPP92_024780' => 'vpl', 'Hund02688' => 'sun', 'Hund09380' => 'sun', 'Hund09381' => 'sun', 'Hund09832' => 'sun', 'Hund09833' => 'sun', 'Hund11351' => 'sun', 'Hund11513' => 'sun', 'Lalb_Chr06g0162591' => 'lal', 'Lalb_Chr06g0162601' => 'lal', 'Lalb_Chr06g0169321' => 'lal', 'Lalb_Chr09g0330951' => 'lal', 'Lalb_Chr16g0387631' => 'lal', 'Lalb_Chr21g0306241' => 'lal', 'Lalb_Chr25g0290051' => 'lal', 'Lalb_Chr25g0290061' => 'lal', 'Lalb_Chr25g0290071' => 'lal', 'Lj1g0003876' => 'lja', 'Lj1P1207T36' => 'lonja', 'Lj2C1156G12' => 'lonja', 'Lj3A793G39' => 'lonja', 'Lj3C580G2' => 'lonja', 'Lj3C780G2' => 'lonja', 'Lj3C780T4' => 'lonja', 'Lj3C793G9' => 'lonja', 'Lj4g0012960' => 'lja', 'Lj5g0021252' => 'lja', 'Lj5g0021484' => 'lja', 'Lj5g0024528' => 'lja', 'Lj6A399T12' => 'lonja', 'Lj6A656G65' => 'lonja', 'Lsat_1_v5_gn_3_125500' => 'lsa', 'Lsat_1_v5_gn_3_125540' => 'lsa', 'Lsat_1_v5_gn_5_72701' => 'lsa', 'Lsat_1_v5_gn_8_91560' => 'lsa', 'Lsat_1_v5_gn_9_9640' => 'lsa', 'Manes.01G200600' => 'mes', 'Manes.01G200700' => 'mes', 'Manes.03G168900' => 'mes', 'Manes.03G169000' => 'mes', 'Manes.05G085801' => 'mes', 'Manes.05G086200' => 'mes', 'Manes.15G036700' => 'mes', 'Manes.15G036900' => 'mes', 'Mapoly0004s0172' => 'mpo', 'Mapoly0023s0001' => 'mpo', 'Mapoly0142s0012' => 'mpo', 'MBI01_g32854_MAGBIO' => 'mbi', 'MBI11_g24427_MAGBIO' => 'mbi', 'MBI11_g47319_MAGBIO' => 'mbi', 'MCO01G433' => 'mco', 'MD00G1187800' => 'mdo', 'MD04G1226500' => 'mdo', 'MD05G1203900' => 'mdo', 'MD10G1191100' => 'mdo', 'MD12G1243500' => 'mdo', 'MD13G1207000' => 'mdo', 'MD13G1207100' => 'mdo', 'MD16G1208600' => 'mdo', 'Medtr1g050352' => 'mtr', 'Medtr1g070385' => 'mtr', 'Medtr1g070450' => 'mtr', 'Medtr1g075200' => 'mtr', 'Medtr1g075250' => 'mtr', 'Medtr1g075260' => 'mtr', 'Medtr1g475250' => 'mtr', 'Medtr4g075450' => 'mtr', 'Medtr7g096300' => 'mtr', 'Medtr8g105110' => 'mtr', 'MELO3C006470.2' => 'cme', 'MELO3C006471.2' => 'cme', 'MELO3C020772.2' => 'cme', 'MELO3C026780.2' => 'cme', 'MELO3C026781.2' => 'cme', 'Migut.D00390' => 'egut', 'Migut.G00435' => 'egut', 'Migut.G00436' => 'egut', 'Migut.G00718' => 'egut', 'MSTRG.21891' => 'ama', 'MSTRG.26910' => 'ama', 'MSTRG.4099' => 'ama', 'MSTRG.9925' => 'ama', 'Nitab4.5_0000165g0010' => 'nta', 'Nitab4.5_0000209g0180' => 'nta', 'Nitab4.5_0000244g0440' => 'nta', 'Nitab4.5_0000525g0220' => 'nta', 'Nitab4.5_0001597g0020' => 'nta', 'Nitab4.5_0001878g0040' => 'nta', 'Nitab4.5_0001878g0060' => 'nta', 'Nitab4.5_0002838g0100' => 'nta', 'Nitab4.5_0002838g0120' => 'nta', 'Nitab4.5_0004798g0030' => 'nta', 'Nitab4.5_0005420g0010' => 'nta', 'Nitab4.5_0005507g0010' => 'nta', 'Nitab4.5_0005574g0020' => 'nta', 'Nitab4.5_0005838g0010' => 'nta', 'Nitab4.5_0010580g0020' => 'nta', 'Nn1g02599' => 'nnu', 'Nn1g02608' => 'nnu', 'Nn3g17742' => 'nnu', 'Nn3g19534' => 'nnu', 'Nn3g19535' => 'nnu', 'Oeu008790.1' => 'oeu', 'Oeu008792.1' => 'oeu', 'Oeu032590.1' => 'oeu', 'Oeu035349.1' => 'oeu', 'Oeu049791.1' => 'oeu', 'Os01g0774500' => 'osa', 'Os03g0628800' => 'osa', 'Os03g0798600' => 'osa', 'Os05g0508800' => 'osa', 'Peaxi162Scf00036g02018' => 'pax', 'Peaxi162Scf00578g00032' => 'pax', 'Peaxi162Scf00578g00317' => 'pax', 'Peaxi162Scf00785g00114' => 'pax', 'Peaxi162Scf00813g00119' => 'pax', 'Peaxi162Scf00906g00227' => 'pax', 'PGR004G0875' => 'pgr', 'PGR004G2424' => 'pgr', 'PGR031G1239' => 'pgr', 'PGR031G2474' => 'pgr', 'PGR044G0423' => 'pgr', 'PGSC0003DMG400001128' => 'stu', 'PGSC0003DMG400007336' => 'stu', 'PGSC0003DMG400016318' => 'stu', 'PGSC0003DMG400016319' => 'stu', 'PGSC0003DMG400018074' => 'stu', 'Phvul.001G157700' => 'pvu', 'Phvul.002G148550' => 'pvu', 'Phvul.002G320200' => 'pvu', 'Phvul.003G089200' => 'pvu', 'Phvul.007G126000' => 'pvu', 'Phvul.007G126100' => 'pvu', 'Phvul.007G178000' => 'pvu', 'Phvul.007G178200' => 'pvu', 'Potri.002G043000' => 'ptr', 'Potri.002G043200' => 'ptr', 'Potri.003G123750' => 'ptr', 'Potri.005G055401' => 'ptr', 'Potri.005G219700' => 'ptr', 'Potri.005G220000' => 'ptr', 'Potri.008G161901' => 'ptr', 'Potri.008G162000' => 'ptr', 'Potri.008G162400' => 'ptr', 'Potri.010G076900' => 'ptr', 'Pp3c12_9180' => 'ppa', 'Pp3c13_19770' => 'ppa', 'Pp3c14_22950' => 'ppa', 'Pp3c16_12160' => 'ppa', 'Pp3c27_7820' => 'ppa', 'Pp3c2_3490' => 'ppa', 'Pp3c3_23700' => 'ppa', 'Pp3c3_36520' => 'ppa', 'Pp3c4_15250' => 'ppa', 'PRCOL_00007002' => 'pco', 'Prupe.1G030600' => 'ppe', 'Prupe.1G030700' => 'ppe', 'Prupe.6G345200' => 'ppe', 'Prupe.8G230300' => 'ppe', 'Prupe.8G230500' => 'ppe', 'Psat3g059600' => 'psa', 'Psat5g200920' => 'psa', 'Psat6g056440' => 'psa', 'Psat6g057360' => 'psa', 'Psat6g134120' => 'psa', 'Psat6g134160' => 'psa', 'Psat7g008640' => 'psa', 'Psat7g185240' => 'psa', 'PSO017G1330' => 'pso', 'PSO063G6097' => 'pso', 'PSO170G0835' => 'pso', 'PSO170G2499' => 'pso', 'PSO210G5058' => 'pso', 'PSO210G6154' => 'pso', 'PSO585G0031' => 'pso', 'PSO832G0264' => 'pso', 'PSO832G4288' => 'pso', 'QL03p027355' => 'qlo', 'QL03p027430' => 'qlo', 'QL04p081380' => 'qlo', 'QL06p015642' => 'qlo', 'QL06p015650' => 'qlo', 'QL06p015686' => 'qlo', 'QL12p042927' => 'qlo', 'QL93p1863_0035' => 'qlo', 'RcHm_v2.0_Chr3g0450581' => 'rch', 'RcHm_v2.0_Chr4g0390371' => 'rch', 'RcHm_v2.0_Chr4g0390381' => 'rch', 'RcHm_v2.0_Chr4g0390491' => 'rch', 'RcHm_v2.0_Chr4g0390501' => 'rch', 'RcHm_v2.0_Chr6g0289231' => 'rch', 'Rhsim04G0190400' => 'rsi', 'Rhsim04G0190500' => 'rsi', 'Rhsim04G0190600' => 'rsi', 'Rhsim13G0031400' => 'rsi', 'Rhsim13G0165600' => 'rsi', 'RhsimUnG0114600' => 'rsi', 'RhsimUnG0114700' => 'rsi', 'Sabra02G0034800' => 'sbr', 'Sabra02G0035100' => 'sbr', 'Sabra05G0168600' => 'sbr', 'Sabra05G0168800' => 'sbr', 'Sabra08G0123700' => 'sbr', 'Sabra10G0031900' => 'sbr', 'Sabra13G0039000' => 'sbr', 'SalBow2G0782' => 'sbo', 'SalBow2G1403' => 'sbo', 'SalBow4G0074' => 'sbo', 'SalBow4G2635' => 'sbo', 'SalBow5G3010' => 'sbo', 'Sc05g0000870' => 'sci', 'Sc05g0000890' => 'sci', 'Sc13g0005000' => 'sci', 'Sc13g0005030' => 'sci', 'Sc19g0003790' => 'sci', 'Sc19g0003800' => 'sci', 'Sed0003467' => 'sed', 'Sed0009355' => 'sed', 'Sed0009894' => 'sed', 'Sed0011972' => 'sed', 'Sed0021483' => 'sed', 'Sed0021750' => 'sed', 'Sed0026279' => 'sed', 'SEGI_05312' => 'sgi', 'SEGI_10112' => 'sgi', 'SEGI_15835' => 'sgi', 'SEGI_30386' => 'sgi', 'SEGI_34122' => 'sgi', 'SEGI_35063' => 'sgi', 'SGA_v2.0_scaffold101G29794' => 'sas', 'SGA_v2.0_scaffold1G00573' => 'sas', 'SGA_v2.0_scaffold79G25637' => 'sas', 'SGA_v2.0_scaffold88G27283' => 'sas', 'SGA_v2.0_scaffold88G27285' => 'sas', 'SGA_v2.0_scaffold88G27331' => 'sas', 'SHI09937' => 'shi', 'SMO119G0302' => 'smo', 'SMO137G0231' => 'smo', 'SMO367G1151' => 'smo', 'Solyc02g082000.3' => 'sly', 'Solyc06g031670.3' => 'sly', 'Solyc06g053810.3' => 'sly', 'Solyc07g025457.1' => 'sly', 'Solyc08g059740.1' => 'sly', 'Solyc08g059750.3' => 'sly', 'Solyc09g083370.3' => 'sly', 'Solyc12g038950.3' => 'sly', 'Sopen02g026630' => 'spe', 'Sopen06g018930' => 'spe', 'Sopen06g018940' => 'spe', 'Sopen08g009460' => 'spe', 'Sopen09g032290' => 'spe', 'Sp1g03080' => 'spa', 'Sp1g03090' => 'spa', 'Sp1g05480' => 'spa', 'Sp2g07860' => 'spa', 'Sp2g08430' => 'spa', 'Sp2g08440' => 'spa', 'Sp2g26200' => 'spa', 'Sp4g13170' => 'spa', 'Sp6g33840' => 'spa', 'SpUn1204_0010' => 'spa', 'TAR365G0908' => 'tar', 'TAR381G1270' => 'tar', 'TAR381G1651' => 'tar', 'TAR625G1131' => 'tar', 'TAR633G0962' => 'tar', 'TAR633G1729' => 'tar', 'TAR633G1864' => 'tar', 'TAR636G0221' => 'tar', 'TAR636G0314' => 'tar', 'TAR636G3202' => 'tar', 'THA.LOC104800805' => 'tha', 'THA.LOC104801096' => 'tha', 'THA.LOC104801555' => 'tha', 'THA.LOC104808491' => 'tha', 'THA.LOC104808595' => 'tha', 'THA.LOC104815985' => 'tha', 'THA.LOC104822250' => 'tha', 'THA.LOC104826071' => 'tha', 'Thecc.01G265200' => 'tca', 'Thecc.01G265300' => 'tca', 'Thecc.01G265700' => 'tca', 'Thecc.03G109100' => 'tca', 'Thecc.04G245900' => 'tca', 'Thecc.04G246000' => 'tca', 'Thhalv10003334m.g' => 'esa', 'Thhalv10005508m.g' => 'esa', 'Thhalv10005643m.g' => 'esa', 'Thhalv10007316m.g' => 'esa', 'Thhalv10009006m.g' => 'esa', 'Thhalv10009309m.g' => 'esa', 'Thhalv10014917m.g' => 'esa', 'Thhalv10014919m.g' => 'esa', 'Thhalv10015393m.g' => 'esa', 'Thhalv10016515m.g' => 'esa', 'Thhalv10029242m.g' => 'esa', 'TPR.G16654' => 'tpr', 'TPR.G20589' => 'tpr', 'TPR.G23029' => 'tpr', 'TPR.G27731' => 'tpr', 'TPR.G28889' => 'tpr', 'TPR.G28899' => 'tpr', 'TPR.G30846' => 'tpr', 'TPR.G5452' => 'tpr', 'TPR.G5713' => 'tpr', 'TPR.G9046' => 'tpr', 'TPR.G9061' => 'tpr', 'TWI09G1075' => 'twi', 'TWI12G0806' => 'twi', 'TWI18G0108' => 'twi', 'TWI53G1361' => 'twi', 'TWI73G0185' => 'twi', 'TWI73G0427' => 'twi', 'unitig_37.g12001' => 'ugi', 'unitig_747.g21660' => 'ugi', 'unitig_748.g7232' => 'ugi', 'unitig_748.g7315' => 'ugi', 'unitig_85.g27262' => 'ugi', 'unitig_92.g28220' => 'ugi', 'vmacro02632' => 'vma', 'vmacro08410' => 'vma', 'vmacro08411' => 'vma', 'vmacro15407' => 'vma', 'VMungo0251G3619' => 'vmu', 'VMungo0720G1204' => 'vmu', 'VMungo0720G1918' => 'vmu', 'VMungo0720G2387' => 'vmu', 'VMungo0720G2961' => 'vmu', 'VMungo1215G2154' => 'vmu', 'VMungo1383G2411' => 'vmu', 'Zm00001eb051130' => 'zma', 'Zm00001eb116830' => 'zma', 'Zm00001eb116850' => 'zma', 'Zm00001eb151740' => 'zma', 'Zm00001eb292360' => 'zma', 'Zm00001eb301640' => 'zma' ), 'gf_id' => 'HOM05D000856', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000856' ), 'data_identifier' => 'HOM05D000856', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000856', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p00010' => 'bna', 'A03p04160' => 'bna', 'A03p17160' => 'bna', 'A04p23370' => 'bna', 'A05p14860' => 'bna', 'A08p37020' => 'bna', 'A09p08050' => 'bna', 'A09p66800' => 'bna', 'A09p67940' => 'bna', 'A10p02680' => 'bna', 'A10p05320' => 'bna', 'Aa31LG1G20560' => 'aar', 'Aa31LG1G20610' => 'aar', 'Aa31LG1G7810' => 'aar', 'Aa31LG5G3590' => 'aar', 'Aa31LG5G6140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3819' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4683' => 'aag', 'Actinidia04480' => 'ach', 'Actinidia05466' => 'ach', 'Actinidia08445' => 'ach', 'Actinidia21170' => 'ach', 'Actinidia24812' => 'ach', 'Actinidia24951' => 'ach', 'Actinidia40088' => 'ach', 'Ah.02g111660' => 'amhyb', 'Ah.11g048900' => 'amhyb', 'Ah.11g049910' => 'amhyb', 'AL1G13870' => 'aly', 'AL1G13880' => 'aly', 'AL1G16760' => 'aly', 'AL390U10020' => 'aly', 'AL4G25520' => 'aly', 'AL6G19890' => 'aly', 'AL6G19900' => 'aly', 'AL6G19910' => 'aly', 'AL8G40100' => 'aly', 'Aqoxy2G03562' => 'aox', 'Aqoxy5G00316' => 'aox', 'Aqoxy5G00926' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1628KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1H403S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2FU6SJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.882I6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8YRY2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YN1SN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AF70II' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZA8L1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F916KL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHRD8H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KTZ8QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S22EMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8M29T' => 'arhy', 'AT1G04270' => 'ath', 'AT1G04280' => 'ath', 'AT1G06750' => 'ath', 'AT1G33850' => 'ath', 'AT2G30630' => 'ath', 'AT5G09490' => 'ath', 'AT5G09500' => 'ath', 'AT5G09510' => 'ath', 'AT5G43640' => 'ath', 'AT5G63070' => 'ath', 'ATR0605G315' => 'atr', 'Atru.chr11.175' => 'acertr', 'Atru.chr11.653' => 'acertr', 'Atru.chr3.1616' => 'acertr', 'Atru.chr4.2230' => 'acertr', 'Atru.chr4.2232' => 'acertr', 'Atru.chr5.1598' => 'acertr', 'Atru.chr5.1600' => 'acertr', 'Atru.chr5.2188' => 'acertr', 'AUR62008326' => 'cqu', 'AUR62011922' => 'cqu', 'AUR62011924' => 'cqu', 'AUR62021771' => 'cqu', 'AUR62032237' => 'cqu', 'AUR62032240' => 'cqu', 'BcaB01g05572' => 'bca', 'BcaB02g10337' => 'bca', 'BcaB04g19944' => 'bca', 'BcaB05g21548' => 'bca', 'BcaB05g21549' => 'bca', 'BcaB05g23227' => 'bca', 'BcaB06g26256' => 'bca', 'BcaB06g26257' => 'bca', 'BcaB06g28379' => 'bca', 'BcaC02g11159' => 'bca', 'BcaC03g13258' => 'bca', 'BcaC03g13259' => 'bca', 'BcaC05g24456' => 'bca', 'BcaC05g24457' => 'bca', 'BcaC07g36922' => 'bca', 'BcaC07g36923' => 'bca', 'BcaC07g42050' => 'bca', 'BcaC07g42176' => 'bca', 'BcaC07g42195' => 'bca', 'BcaC07g42196' => 'bca', 'BcaNung06674' => 'bca', 'BolC2t06351H' => 'bol', 'BolC2t06352H' => 'bol', 'BolC3t12993H' => 'bol', 'BolC4t23525H' => 'bol', 'BolC4t27475H' => 'bol', 'BolC5t29025H' => 'bol', 'BolC5t29026H' => 'bol', 'BolC8t46898H' => 'bol', 'BolC8t46899H' => 'bol', 'BolC8t52630H' => 'bol', 'BolC8t52765H' => 'bol', 'BolC9t53824H' => 'bol', 'BraA03t09760Z' => 'bra', 'BraA03t10990Z' => 'bra', 'BraA05t20413Z' => 'bra', 'BraA08t35602Z' => 'bra', 'BraA09t36458Z' => 'bra', 'BraA09t42018Z' => 'bra', 'BraA09t42129Z' => 'bra', 'BraA10t42536Z' => 'bra', 'BraA10t42537Z' => 'bra', 'C01p10690' => 'bna', 'C02p03890' => 'bna', 'C02p03900' => 'bna', 'C03p04620' => 'bna', 'C04p19870' => 'bna', 'C04p59670' => 'bna', 'C05p02460' => 'bna', 'C05p02470' => 'bna', 'C08p00980' => 'bna', 'C08p00990' => 'bna', 'C08p51030' => 'bna', 'C08p52360' => 'bna', 'C09p09120' => 'bna', 'CAN.G19.15' => 'can', 'CAN.G251.10' => 'can', 'CAN.G251.9' => 'can', 'CAN.G398.24' => 'can', 'CAN.G410.32' => 'can', 'CAN.G881.2' => 'can', 'CANSAT01G3025' => 'cansat', 'CANSAT78G1211' => 'cansat', 'CANSAT78G1218' => 'cansat', 'CANSAT78G1521' => 'cansat', 'CANSAT78G1670' => 'cansat', 'CARHR003600' => 'chi', 'CARHR003610' => 'chi', 'CARHR006290' => 'chi', 'CARHR006430' => 'chi', 'CARHR124110' => 'chi', 'CARHR203870' => 'chi', 'CARHR203880' => 'chi', 'CARHR203890' => 'chi', 'CARHR276880' => 'chi', 'Carub.0001s0346' => 'cru', 'Carub.0001s0347' => 'cru', 'Carub.0001s0607' => 'cru', 'Carub.0003s2768' => 'cru', 'Carub.0003s2769' => 'cru', 'Carub.0004s1178' => 'cru', 'Carub.0006s0806' => 'cru', 'Carub.0006s0807' => 'cru', 'Carub.0006s0808' => 'cru', 'Carub.0008s0501' => 'cru', 'Carub.0008s2379' => 'cru', 'Ca_08655_v3' => 'car', 'Ca_08922_v3' => 'car', 'Ca_08923_v3' => 'car', 'Ca_09119_v3' => 'car', 'Ca_09703_v3' => 'car', 'Ca_09705_v3' => 'car', 'Ca_09835_v3' => 'car', 'Ca_26403_v3' => 'car', 'Ca_30719_v3' => 'car', 'CBR_g17958' => 'cbr', 'CBR_g40516' => 'cbr', 'Cc00_g05350' => 'ccan', 'Cc01_g18690' => 'ccan', 'Cc03_g04830' => 'ccan', 'Cc03_g04850' => 'ccan', 'CDE02G4469' => 'cde', 'CDE06G0883' => 'cde', 'CDE06G1295' => 'cde', 'CDE06G1390' => 'cde', 'CDE07G0584' => 'cde', 'CDE07G1084' => 'cde', 'CDE08G1259' => 'cde', 'Cfa002341' => 'cfa', 'Cfa024337' => 'cfa', 'Ciclev10004749m.g' => 'ccl', 'Ciclev10006127m.g' => 'ccl', 'Ciclev10019720m.g' => 'ccl', 'Ciclev10022652m.g' => 'ccl', 'CiPaw.01G190400' => 'cil', 'CiPaw.01G190500' => 'cil', 'CiPaw.02G116400' => 'cil', 'CiPaw.02G116500' => 'cil', 'CiPaw.04G183000' => 'cil', 'CiPaw.04G183300' => 'cil', 'ClCG05G004610' => 'cla', 'ClCG05G004620' => 'cla', 'ClCG06G006730' => 'cla', 'ClCG06G006740' => 'cla', 'ClCG11G003690' => 'cla', 'COL.COLO4_08276' => 'col', 'COL.COLO4_08277' => 'col', 'COL.COLO4_15787' => 'col', 'COL.COLO4_15789' => 'col', 'Cpa.g.c44815' => 'cpa', 'Cpa.g.sc52.144' => 'cpa', 'Cpa.g.sc58.46' => 'cpa', 'Cpa.g.sc58.47' => 'cpa', 'Cre08.g360900' => 'cre', 'CsaV3_2G013030' => 'csa', 'CsaV3_2G013050' => 'csa', 'CsaV3_2G015620' => 'csa', 'CsaV3_3G012590' => 'csa', 'CsaV3_3G012600' => 'csa', 'CSS0001641' => 'camsi', 'CSS0008310' => 'camsi', 'CSS0013011' => 'camsi', 'CSS0017147' => 'camsi', 'CSS0022970' => 'camsi', 'CSS0025655' => 'camsi', 'CSS0028665' => 'camsi', 'CSS0029117' => 'camsi', 'CSS0032024' => 'camsi', 'CSS0039681' => 'camsi', 'CSS0046516' => 'camsi', 'CSS0050307' => 'camsi', 'DCAR_005871' => 'dca', 'DCAR_007342' => 'dca', 'DCAR_024228' => 'dca', 'DCAR_027277' => 'dca', 'DCAR_030718' => 'dca', 'Dinv20287' => 'din', 'Dinv22461' => 'din', 'Dinv22464' => 'din', 'Dinv29912' => 'din', 'Dinv29913' => 'din', 'Dinv34580' => 'din', 'Dinv34582' => 'din', 'Dinv44632' => 'din', 'Duzib052G0266' => 'dzi', 'Duzib133G0907' => 'dzi', 'Duzib133G1034' => 'dzi', 'Duzib138G0207' => 'dzi', 'Duzib138G0491' => 'dzi', 'Duzib151G0812' => 'dzi', 'Duzib151G1166' => 'dzi', 'Duzib168G0192' => 'dzi', 'Duzib211G0077' => 'dzi', 'Duzib212G0429' => 'dzi', 'Duzib212G0472' => 'dzi', 'ECA233G2617' => 'eca', 'ECA236G4188' => 'eca', 'ECA240G0936' => 'eca', 'ECA240G1129' => 'eca', 'ECA247G0623' => 'eca', 'EL10Ac5g10451' => 'bvu', 'EL10Ac5g10453' => 'bvu', 'EL10Ac5g10894' => 'bvu', 'Eucgr.H00192' => 'egr', 'Eucgr.H00193' => 'egr', 'Eucgr.H00194' => 'egr', 'Eucgr.J01562' => 'egr', 'Eucgr.K03301' => 'egr', 'FAN02G0632' => 'fan', 'FAN05G5378' => 'fan', 'FAN09G3247' => 'fan', 'FAN12G0435' => 'fan', 'FAN12G2426' => 'fan', 'FAN14G1707' => 'fan', 'FAN14G4725' => 'fan', 'FAN15G2071' => 'fan', 'FAN17G3065' => 'fan', 'FAN19G1376' => 'fan', 'FAN20G0354' => 'fan', 'FAN20G2429' => 'fan', 'FAN20G2658' => 'fan', 'FAN24G2343' => 'fan', 'FAN27G2362' => 'fan', 'FAN28G1765' => 'fan', 'FvH4_1g16020' => 'fve', 'FvH4_2g04890' => 'fve', 'FvH4_2g22270' => 'fve', 'FvH4_4g02630' => 'fve', 'FvH4_4g02640' => 'fve', 'FvH4_6g02650' => 'fve', 'Glyma.02G140600' => 'gma', 'Glyma.03G159900' => 'gma', 'Glyma.05G234800' => 'gma', 'Glyma.07G269600' => 'gma', 'Glyma.08G042300' => 'gma', 'Glyma.10G033500' => 'gma', 'Glyma.10G185200' => 'gma', 'Glyma.17G004300' => 'gma', 'Glyma.19G161900' => 'gma', 'Glyma.20G205100' => 'gma', 'Glyma.20G205200' => 'gma', 'Gohir.A01G139101' => 'ghi', 'Gohir.A02G035600' => 'ghi', 'Gohir.A02G117901' => 'ghi', 'Gohir.A07G210100' => 'ghi', 'Gohir.A07G210200' => 'ghi', 'Gohir.A08G061100' => 'ghi', 'Gohir.A09G223000' => 'ghi', 'Gohir.A09G223100' => 'ghi', 'Gohir.A10G113900' => 'ghi', 'Gohir.A10G114000' => 'ghi', 'Gohir.D02G042300' => 'ghi', 'Gohir.D07G216100' => 'ghi', 'Gohir.D07G216200' => 'ghi', 'Gohir.D08G070400' => 'ghi', 'Gohir.D09G225000' => 'ghi', 'Gohir.D09G225100' => 'ghi', 'Gohir.D10G152300' => 'ghi', 'Gohir.D10G153200' => 'ghi', 'Gohir.D11G133701' => 'ghi', 'Gorai.004G074100' => 'gra', 'Gorai.005G046800' => 'gra', 'Gorai.006G246500' => 'gra', 'Gorai.006G246600' => 'gra', 'Gorai.007G142900' => 'gra', 'Gorai.011G171000' => 'gra', 'Gorai.011G171100' => 'gra', 'Gorai.013G104300' => 'gra', 'Gorai.013G104400' => 'gra', 'GSVIVG01000754001' => 'vvi', 'GSVIVG01000756001' => 'vvi', 'GSVIVG01010903001' => 'vvi', 'GSVIVG01017623001' => 'vvi', 'GSVIVG01018113001' => 'vvi', 'GSVIVG01018116001' => 'vvi', 'GSVIVG01018118001' => 'vvi', 'HanXRQChr03g0076211' => 'han', 'HanXRQChr03g0092431' => 'han', 'HanXRQChr03g0092441' => 'han', 'HanXRQChr03g0092591' => 'han', 'HanXRQChr03g0092671' => 'han', 'HanXRQChr03g0092681' => 'han', 'HanXRQChr03g0092691' => 'han', 'HanXRQChr03g0092701' => 'han', 'HanXRQChr03g0092721' => 'han', 'HanXRQChr03g0092731' => 'han', 'HanXRQChr04g0113681' => 'han', 'HanXRQChr10g0281371' => 'han', 'HanXRQChr11g0337141' => 'han', 'HanXRQChr13g0424521' => 'han', 'HanXRQChr13g0424531' => 'han', 'HanXRQChr13g0424541' => 'han', 'HanXRQChr16g0498221' => 'han', 'Haze_04377' => 'cav', 'Haze_11298' => 'cav', 'Haze_24547' => 'cav', 'Haze_24550' => 'cav', 'Haze_26587' => 'cav', 'Hma1.2p1_0650F.1_g195410' => 'hma', 'Hma1.2p1_0893F.1_g233470' => 'hma', 'HPP92_006508' => 'vpl', 'HPP92_024780' => 'vpl', 'Hund02688' => 'sun', 'Hund09380' => 'sun', 'Hund09381' => 'sun', 'Hund09832' => 'sun', 'Hund09833' => 'sun', 'Hund11351' => 'sun', 'Hund11513' => 'sun', 'Lalb_Chr06g0162591' => 'lal', 'Lalb_Chr06g0162601' => 'lal', 'Lalb_Chr06g0169321' => 'lal', 'Lalb_Chr09g0330951' => 'lal', 'Lalb_Chr16g0387631' => 'lal', 'Lalb_Chr21g0306241' => 'lal', 'Lalb_Chr25g0290051' => 'lal', 'Lalb_Chr25g0290061' => 'lal', 'Lalb_Chr25g0290071' => 'lal', 'Lj1g0003876' => 'lja', 'Lj1P1207T36' => 'lonja', 'Lj2C1156G12' => 'lonja', 'Lj3A793G39' => 'lonja', 'Lj3C580G2' => 'lonja', 'Lj3C780G2' => 'lonja', 'Lj3C780T4' => 'lonja', 'Lj3C793G9' => 'lonja', 'Lj4g0012960' => 'lja', 'Lj5g0021252' => 'lja', 'Lj5g0021484' => 'lja', 'Lj5g0024528' => 'lja', 'Lj6A399T12' => 'lonja', 'Lj6A656G65' => 'lonja', 'Lsat_1_v5_gn_3_125500' => 'lsa', 'Lsat_1_v5_gn_3_125540' => 'lsa', 'Lsat_1_v5_gn_5_72701' => 'lsa', 'Lsat_1_v5_gn_8_91560' => 'lsa', 'Lsat_1_v5_gn_9_9640' => 'lsa', 'Manes.01G200600' => 'mes', 'Manes.01G200700' => 'mes', 'Manes.03G168900' => 'mes', 'Manes.03G169000' => 'mes', 'Manes.05G085801' => 'mes', 'Manes.05G086200' => 'mes', 'Manes.15G036700' => 'mes', 'Manes.15G036900' => 'mes', 'Mapoly0004s0172' => 'mpo', 'Mapoly0023s0001' => 'mpo', 'Mapoly0142s0012' => 'mpo', 'MBI01_g32854_MAGBIO' => 'mbi', 'MBI11_g24427_MAGBIO' => 'mbi', 'MBI11_g47319_MAGBIO' => 'mbi', 'MCO01G433' => 'mco', 'MD00G1187800' => 'mdo', 'MD04G1226500' => 'mdo', 'MD05G1203900' => 'mdo', 'MD10G1191100' => 'mdo', 'MD12G1243500' => 'mdo', 'MD13G1207000' => 'mdo', 'MD13G1207100' => 'mdo', 'MD16G1208600' => 'mdo', 'Medtr1g050352' => 'mtr', 'Medtr1g070385' => 'mtr', 'Medtr1g070450' => 'mtr', 'Medtr1g075200' => 'mtr', 'Medtr1g075250' => 'mtr', 'Medtr1g075260' => 'mtr', 'Medtr1g475250' => 'mtr', 'Medtr4g075450' => 'mtr', 'Medtr7g096300' => 'mtr', 'Medtr8g105110' => 'mtr', 'MELO3C006470.2' => 'cme', 'MELO3C006471.2' => 'cme', 'MELO3C020772.2' => 'cme', 'MELO3C026780.2' => 'cme', 'MELO3C026781.2' => 'cme', 'Migut.D00390' => 'egut', 'Migut.G00435' => 'egut', 'Migut.G00436' => 'egut', 'Migut.G00718' => 'egut', 'MSTRG.21891' => 'ama', 'MSTRG.26910' => 'ama', 'MSTRG.4099' => 'ama', 'MSTRG.9925' => 'ama', 'Nitab4.5_0000165g0010' => 'nta', 'Nitab4.5_0000209g0180' => 'nta', 'Nitab4.5_0000244g0440' => 'nta', 'Nitab4.5_0000525g0220' => 'nta', 'Nitab4.5_0001597g0020' => 'nta', 'Nitab4.5_0001878g0040' => 'nta', 'Nitab4.5_0001878g0060' => 'nta', 'Nitab4.5_0002838g0100' => 'nta', 'Nitab4.5_0002838g0120' => 'nta', 'Nitab4.5_0004798g0030' => 'nta', 'Nitab4.5_0005420g0010' => 'nta', 'Nitab4.5_0005507g0010' => 'nta', 'Nitab4.5_0005574g0020' => 'nta', 'Nitab4.5_0005838g0010' => 'nta', 'Nitab4.5_0010580g0020' => 'nta', 'Nn1g02599' => 'nnu', 'Nn1g02608' => 'nnu', 'Nn3g17742' => 'nnu', 'Nn3g19534' => 'nnu', 'Nn3g19535' => 'nnu', 'Oeu008790.1' => 'oeu', 'Oeu008792.1' => 'oeu', 'Oeu032590.1' => 'oeu', 'Oeu035349.1' => 'oeu', 'Oeu049791.1' => 'oeu', 'Os01g0774500' => 'osa', 'Os03g0628800' => 'osa', 'Os03g0798600' => 'osa', 'Os05g0508800' => 'osa', 'Peaxi162Scf00036g02018' => 'pax', 'Peaxi162Scf00578g00032' => 'pax', 'Peaxi162Scf00578g00317' => 'pax', 'Peaxi162Scf00785g00114' => 'pax', 'Peaxi162Scf00813g00119' => 'pax', 'Peaxi162Scf00906g00227' => 'pax', 'PGR004G0875' => 'pgr', 'PGR004G2424' => 'pgr', 'PGR031G1239' => 'pgr', 'PGR031G2474' => 'pgr', 'PGR044G0423' => 'pgr', 'PGSC0003DMG400001128' => 'stu', 'PGSC0003DMG400007336' => 'stu', 'PGSC0003DMG400016318' => 'stu', 'PGSC0003DMG400016319' => 'stu', 'PGSC0003DMG400018074' => 'stu', 'Phvul.001G157700' => 'pvu', 'Phvul.002G148550' => 'pvu', 'Phvul.002G320200' => 'pvu', 'Phvul.003G089200' => 'pvu', 'Phvul.007G126000' => 'pvu', 'Phvul.007G126100' => 'pvu', 'Phvul.007G178000' => 'pvu', 'Phvul.007G178200' => 'pvu', 'Potri.002G043000' => 'ptr', 'Potri.002G043200' => 'ptr', 'Potri.003G123750' => 'ptr', 'Potri.005G055401' => 'ptr', 'Potri.005G219700' => 'ptr', 'Potri.005G220000' => 'ptr', 'Potri.008G161901' => 'ptr', 'Potri.008G162000' => 'ptr', 'Potri.008G162400' => 'ptr', 'Potri.010G076900' => 'ptr', 'Pp3c12_9180' => 'ppa', 'Pp3c13_19770' => 'ppa', 'Pp3c14_22950' => 'ppa', 'Pp3c16_12160' => 'ppa', 'Pp3c27_7820' => 'ppa', 'Pp3c2_3490' => 'ppa', 'Pp3c3_23700' => 'ppa', 'Pp3c3_36520' => 'ppa', 'Pp3c4_15250' => 'ppa', 'PRCOL_00007002' => 'pco', 'Prupe.1G030600' => 'ppe', 'Prupe.1G030700' => 'ppe', 'Prupe.6G345200' => 'ppe', 'Prupe.8G230300' => 'ppe', 'Prupe.8G230500' => 'ppe', 'Psat3g059600' => 'psa', 'Psat5g200920' => 'psa', 'Psat6g056440' => 'psa', 'Psat6g057360' => 'psa', 'Psat6g134120' => 'psa', 'Psat6g134160' => 'psa', 'Psat7g008640' => 'psa', 'Psat7g185240' => 'psa', 'PSO017G1330' => 'pso', 'PSO063G6097' => 'pso', 'PSO170G0835' => 'pso', 'PSO170G2499' => 'pso', 'PSO210G5058' => 'pso', 'PSO210G6154' => 'pso', 'PSO585G0031' => 'pso', 'PSO832G0264' => 'pso', 'PSO832G4288' => 'pso', 'QL03p027355' => 'qlo', 'QL03p027430' => 'qlo', 'QL04p081380' => 'qlo', 'QL06p015642' => 'qlo', 'QL06p015650' => 'qlo', 'QL06p015686' => 'qlo', 'QL12p042927' => 'qlo', 'QL93p1863_0035' => 'qlo', 'RcHm_v2.0_Chr3g0450581' => 'rch', 'RcHm_v2.0_Chr4g0390371' => 'rch', 'RcHm_v2.0_Chr4g0390381' => 'rch', 'RcHm_v2.0_Chr4g0390491' => 'rch', 'RcHm_v2.0_Chr4g0390501' => 'rch', 'RcHm_v2.0_Chr6g0289231' => 'rch', 'Rhsim04G0190400' => 'rsi', 'Rhsim04G0190500' => 'rsi', 'Rhsim04G0190600' => 'rsi', 'Rhsim13G0031400' => 'rsi', 'Rhsim13G0165600' => 'rsi', 'RhsimUnG0114600' => 'rsi', 'RhsimUnG0114700' => 'rsi', 'Sabra02G0034800' => 'sbr', 'Sabra02G0035100' => 'sbr', 'Sabra05G0168600' => 'sbr', 'Sabra05G0168800' => 'sbr', 'Sabra08G0123700' => 'sbr', 'Sabra10G0031900' => 'sbr', 'Sabra13G0039000' => 'sbr', 'SalBow2G0782' => 'sbo', 'SalBow2G1403' => 'sbo', 'SalBow4G0074' => 'sbo', 'SalBow4G2635' => 'sbo', 'SalBow5G3010' => 'sbo', 'Sc05g0000870' => 'sci', 'Sc05g0000890' => 'sci', 'Sc13g0005000' => 'sci', 'Sc13g0005030' => 'sci', 'Sc19g0003790' => 'sci', 'Sc19g0003800' => 'sci', 'Sed0003467' => 'sed', 'Sed0009355' => 'sed', 'Sed0009894' => 'sed', 'Sed0011972' => 'sed', 'Sed0021483' => 'sed', 'Sed0021750' => 'sed', 'Sed0026279' => 'sed', 'SEGI_05312' => 'sgi', 'SEGI_10112' => 'sgi', 'SEGI_15835' => 'sgi', 'SEGI_30386' => 'sgi', 'SEGI_34122' => 'sgi', 'SEGI_35063' => 'sgi', 'SGA_v2.0_scaffold101G29794' => 'sas', 'SGA_v2.0_scaffold1G00573' => 'sas', 'SGA_v2.0_scaffold79G25637' => 'sas', 'SGA_v2.0_scaffold88G27283' => 'sas', 'SGA_v2.0_scaffold88G27285' => 'sas', 'SGA_v2.0_scaffold88G27331' => 'sas', 'SHI09937' => 'shi', 'SMO119G0302' => 'smo', 'SMO137G0231' => 'smo', 'SMO367G1151' => 'smo', 'Solyc02g082000.3' => 'sly', 'Solyc06g031670.3' => 'sly', 'Solyc06g053810.3' => 'sly', 'Solyc07g025457.1' => 'sly', 'Solyc08g059740.1' => 'sly', 'Solyc08g059750.3' => 'sly', 'Solyc09g083370.3' => 'sly', 'Solyc12g038950.3' => 'sly', 'Sopen02g026630' => 'spe', 'Sopen06g018930' => 'spe', 'Sopen06g018940' => 'spe', 'Sopen08g009460' => 'spe', 'Sopen09g032290' => 'spe', 'Sp1g03080' => 'spa', 'Sp1g03090' => 'spa', 'Sp1g05480' => 'spa', 'Sp2g07860' => 'spa', 'Sp2g08430' => 'spa', 'Sp2g08440' => 'spa', 'Sp2g26200' => 'spa', 'Sp4g13170' => 'spa', 'Sp6g33840' => 'spa', 'SpUn1204_0010' => 'spa', 'TAR365G0908' => 'tar', 'TAR381G1270' => 'tar', 'TAR381G1651' => 'tar', 'TAR625G1131' => 'tar', 'TAR633G0962' => 'tar', 'TAR633G1729' => 'tar', 'TAR633G1864' => 'tar', 'TAR636G0221' => 'tar', 'TAR636G0314' => 'tar', 'TAR636G3202' => 'tar', 'THA.LOC104800805' => 'tha', 'THA.LOC104801096' => 'tha', 'THA.LOC104801555' => 'tha', 'THA.LOC104808491' => 'tha', 'THA.LOC104808595' => 'tha', 'THA.LOC104815985' => 'tha', 'THA.LOC104822250' => 'tha', 'THA.LOC104826071' => 'tha', 'Thecc.01G265200' => 'tca', 'Thecc.01G265300' => 'tca', 'Thecc.01G265700' => 'tca', 'Thecc.03G109100' => 'tca', 'Thecc.04G245900' => 'tca', 'Thecc.04G246000' => 'tca', 'Thhalv10003334m.g' => 'esa', 'Thhalv10005508m.g' => 'esa', 'Thhalv10005643m.g' => 'esa', 'Thhalv10007316m.g' => 'esa', 'Thhalv10009006m.g' => 'esa', 'Thhalv10009309m.g' => 'esa', 'Thhalv10014917m.g' => 'esa', 'Thhalv10014919m.g' => 'esa', 'Thhalv10015393m.g' => 'esa', 'Thhalv10016515m.g' => 'esa', 'Thhalv10029242m.g' => 'esa', 'TPR.G16654' => 'tpr', 'TPR.G20589' => 'tpr', 'TPR.G23029' => 'tpr', 'TPR.G27731' => 'tpr', 'TPR.G28889' => 'tpr', 'TPR.G28899' => 'tpr', 'TPR.G30846' => 'tpr', 'TPR.G5452' => 'tpr', 'TPR.G5713' => 'tpr', 'TPR.G9046' => 'tpr', 'TPR.G9061' => 'tpr', 'TWI09G1075' => 'twi', 'TWI12G0806' => 'twi', 'TWI18G0108' => 'twi', 'TWI53G1361' => 'twi', 'TWI73G0185' => 'twi', 'TWI73G0427' => 'twi', 'unitig_37.g12001' => 'ugi', 'unitig_747.g21660' => 'ugi', 'unitig_748.g7232' => 'ugi', 'unitig_748.g7315' => 'ugi', 'unitig_85.g27262' => 'ugi', 'unitig_92.g28220' => 'ugi', 'vmacro02632' => 'vma', 'vmacro08410' => 'vma', 'vmacro08411' => 'vma', 'vmacro15407' => 'vma', 'VMungo0251G3619' => 'vmu', 'VMungo0720G1204' => 'vmu', 'VMungo0720G1918' => 'vmu', 'VMungo0720G2387' => 'vmu', 'VMungo0720G2961' => 'vmu', 'VMungo1215G2154' => 'vmu', 'VMungo1383G2411' => 'vmu', 'Zm00001eb051130' => 'zma', 'Zm00001eb116830' => 'zma', 'Zm00001eb116850' => 'zma', 'Zm00001eb151740' => 'zma', 'Zm00001eb292360' => 'zma', 'Zm00001eb301640' => 'zma' ) $gf_id = 'HOM05D000856' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000856' ) $data_identifier = 'HOM05D000856' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 13, 'ath' => (int) 10, 'atr' => (int) 1, 'acertr' => (int) 8, 'cqu' => (int) 6, 'bca' => (int) 21, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 11, 'car' => (int) 9, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 8, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 5, 'fan' => (int) 16, 'fve' => (int) 6, 'gma' => (int) 11, 'ghi' => (int) 19, 'gra' => (int) 9, 'vvi' => (int) 7, 'han' => (int) 17, 'cav' => (int) 5, 'hma' => (int) 2, 'vpl' => (int) 2, 'sun' => (int) 7, 'lal' => (int) 9, 'lja' => (int) 5, 'lonja' => (int) 9, 'lsa' => (int) 5, 'mes' => (int) 8, 'mpo' => (int) 3, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 10, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 15, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 9, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 9, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 6, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 5, 'spa' => (int) 10, 'tar' => (int) 10, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 11, 'tpr' => (int) 11, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 4, 'vmu' => (int) 7, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb301640' $species_info = array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ) $local_species = 'cil' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000856', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p00010' => 'bna', 'A03p04160' => 'bna', 'A03p17160' => 'bna', 'A04p23370' => 'bna', 'A05p14860' => 'bna', 'A08p37020' => 'bna', 'A09p08050' => 'bna', 'A09p66800' => 'bna', 'A09p67940' => 'bna', 'A10p02680' => 'bna', 'A10p05320' => 'bna', 'Aa31LG1G20560' => 'aar', 'Aa31LG1G20610' => 'aar', 'Aa31LG1G7810' => 'aar', 'Aa31LG5G3590' => 'aar', 'Aa31LG5G6140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3819' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4683' => 'aag', 'Actinidia04480' => 'ach', 'Actinidia05466' => 'ach', 'Actinidia08445' => 'ach', 'Actinidia21170' => 'ach', 'Actinidia24812' => 'ach', 'Actinidia24951' => 'ach', 'Actinidia40088' => 'ach', 'Ah.02g111660' => 'amhyb', 'Ah.11g048900' => 'amhyb', 'Ah.11g049910' => 'amhyb', 'AL1G13870' => 'aly', 'AL1G13880' => 'aly', 'AL1G16760' => 'aly', 'AL390U10020' => 'aly', 'AL4G25520' => 'aly', 'AL6G19890' => 'aly', 'AL6G19900' => 'aly', 'AL6G19910' => 'aly', 'AL8G40100' => 'aly', 'Aqoxy2G03562' => 'aox', 'Aqoxy5G00316' => 'aox', 'Aqoxy5G00926' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1628KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1H403S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2FU6SJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.882I6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8YRY2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YN1SN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AF70II' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZA8L1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F916KL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHRD8H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KTZ8QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S22EMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8M29T' => 'arhy', 'AT1G04270' => 'ath', 'AT1G04280' => 'ath', 'AT1G06750' => 'ath', 'AT1G33850' => 'ath', 'AT2G30630' => 'ath', 'AT5G09490' => 'ath', 'AT5G09500' => 'ath', 'AT5G09510' => 'ath', 'AT5G43640' => 'ath', 'AT5G63070' => 'ath', 'ATR0605G315' => 'atr', 'Atru.chr11.175' => 'acertr', 'Atru.chr11.653' => 'acertr', 'Atru.chr3.1616' => 'acertr', 'Atru.chr4.2230' => 'acertr', 'Atru.chr4.2232' => 'acertr', 'Atru.chr5.1598' => 'acertr', 'Atru.chr5.1600' => 'acertr', 'Atru.chr5.2188' => 'acertr', 'AUR62008326' => 'cqu', 'AUR62011922' => 'cqu', 'AUR62011924' => 'cqu', 'AUR62021771' => 'cqu', 'AUR62032237' => 'cqu', 'AUR62032240' => 'cqu', 'BcaB01g05572' => 'bca', 'BcaB02g10337' => 'bca', 'BcaB04g19944' => 'bca', 'BcaB05g21548' => 'bca', 'BcaB05g21549' => 'bca', 'BcaB05g23227' => 'bca', 'BcaB06g26256' => 'bca', 'BcaB06g26257' => 'bca', 'BcaB06g28379' => 'bca', 'BcaC02g11159' => 'bca', 'BcaC03g13258' => 'bca', 'BcaC03g13259' => 'bca', 'BcaC05g24456' => 'bca', 'BcaC05g24457' => 'bca', 'BcaC07g36922' => 'bca', 'BcaC07g36923' => 'bca', 'BcaC07g42050' => 'bca', 'BcaC07g42176' => 'bca', 'BcaC07g42195' => 'bca', 'BcaC07g42196' => 'bca', 'BcaNung06674' => 'bca', 'BolC2t06351H' => 'bol', 'BolC2t06352H' => 'bol', 'BolC3t12993H' => 'bol', 'BolC4t23525H' => 'bol', 'BolC4t27475H' => 'bol', 'BolC5t29025H' => 'bol', 'BolC5t29026H' => 'bol', 'BolC8t46898H' => 'bol', 'BolC8t46899H' => 'bol', 'BolC8t52630H' => 'bol', 'BolC8t52765H' => 'bol', 'BolC9t53824H' => 'bol', 'BraA03t09760Z' => 'bra', 'BraA03t10990Z' => 'bra', 'BraA05t20413Z' => 'bra', 'BraA08t35602Z' => 'bra', 'BraA09t36458Z' => 'bra', 'BraA09t42018Z' => 'bra', 'BraA09t42129Z' => 'bra', 'BraA10t42536Z' => 'bra', 'BraA10t42537Z' => 'bra', 'C01p10690' => 'bna', 'C02p03890' => 'bna', 'C02p03900' => 'bna', 'C03p04620' => 'bna', 'C04p19870' => 'bna', 'C04p59670' => 'bna', 'C05p02460' => 'bna', 'C05p02470' => 'bna', 'C08p00980' => 'bna', 'C08p00990' => 'bna', 'C08p51030' => 'bna', 'C08p52360' => 'bna', 'C09p09120' => 'bna', 'CAN.G19.15' => 'can', 'CAN.G251.10' => 'can', 'CAN.G251.9' => 'can', 'CAN.G398.24' => 'can', 'CAN.G410.32' => 'can', 'CAN.G881.2' => 'can', 'CANSAT01G3025' => 'cansat', 'CANSAT78G1211' => 'cansat', 'CANSAT78G1218' => 'cansat', 'CANSAT78G1521' => 'cansat', 'CANSAT78G1670' => 'cansat', 'CARHR003600' => 'chi', 'CARHR003610' => 'chi', 'CARHR006290' => 'chi', 'CARHR006430' => 'chi', 'CARHR124110' => 'chi', 'CARHR203870' => 'chi', 'CARHR203880' => 'chi', 'CARHR203890' => 'chi', 'CARHR276880' => 'chi', 'Carub.0001s0346' => 'cru', 'Carub.0001s0347' => 'cru', 'Carub.0001s0607' => 'cru', 'Carub.0003s2768' => 'cru', 'Carub.0003s2769' => 'cru', 'Carub.0004s1178' => 'cru', 'Carub.0006s0806' => 'cru', 'Carub.0006s0807' => 'cru', 'Carub.0006s0808' => 'cru', 'Carub.0008s0501' => 'cru', 'Carub.0008s2379' => 'cru', 'Ca_08655_v3' => 'car', 'Ca_08922_v3' => 'car', 'Ca_08923_v3' => 'car', 'Ca_09119_v3' => 'car', 'Ca_09703_v3' => 'car', 'Ca_09705_v3' => 'car', 'Ca_09835_v3' => 'car', 'Ca_26403_v3' => 'car', 'Ca_30719_v3' => 'car', 'CBR_g17958' => 'cbr', 'CBR_g40516' => 'cbr', 'Cc00_g05350' => 'ccan', 'Cc01_g18690' => 'ccan', 'Cc03_g04830' => 'ccan', 'Cc03_g04850' => 'ccan', 'CDE02G4469' => 'cde', 'CDE06G0883' => 'cde', 'CDE06G1295' => 'cde', 'CDE06G1390' => 'cde', 'CDE07G0584' => 'cde', 'CDE07G1084' => 'cde', 'CDE08G1259' => 'cde', 'Cfa002341' => 'cfa', 'Cfa024337' => 'cfa', 'Ciclev10004749m.g' => 'ccl', 'Ciclev10006127m.g' => 'ccl', 'Ciclev10019720m.g' => 'ccl', 'Ciclev10022652m.g' => 'ccl', 'CiPaw.01G190400' => 'cil', 'CiPaw.01G190500' => 'cil', 'CiPaw.02G116400' => 'cil', 'CiPaw.02G116500' => 'cil', 'CiPaw.04G183000' => 'cil', 'CiPaw.04G183300' => 'cil', 'ClCG05G004610' => 'cla', 'ClCG05G004620' => 'cla', 'ClCG06G006730' => 'cla', 'ClCG06G006740' => 'cla', 'ClCG11G003690' => 'cla', 'COL.COLO4_08276' => 'col', 'COL.COLO4_08277' => 'col', 'COL.COLO4_15787' => 'col', 'COL.COLO4_15789' => 'col', 'Cpa.g.c44815' => 'cpa', 'Cpa.g.sc52.144' => 'cpa', 'Cpa.g.sc58.46' => 'cpa', 'Cpa.g.sc58.47' => 'cpa', 'Cre08.g360900' => 'cre', 'CsaV3_2G013030' => 'csa', 'CsaV3_2G013050' => 'csa', 'CsaV3_2G015620' => 'csa', 'CsaV3_3G012590' => 'csa', 'CsaV3_3G012600' => 'csa', 'CSS0001641' => 'camsi', 'CSS0008310' => 'camsi', 'CSS0013011' => 'camsi', 'CSS0017147' => 'camsi', 'CSS0022970' => 'camsi', 'CSS0025655' => 'camsi', 'CSS0028665' => 'camsi', 'CSS0029117' => 'camsi', 'CSS0032024' => 'camsi', 'CSS0039681' => 'camsi', 'CSS0046516' => 'camsi', 'CSS0050307' => 'camsi', 'DCAR_005871' => 'dca', 'DCAR_007342' => 'dca', 'DCAR_024228' => 'dca', 'DCAR_027277' => 'dca', 'DCAR_030718' => 'dca', 'Dinv20287' => 'din', 'Dinv22461' => 'din', 'Dinv22464' => 'din', 'Dinv29912' => 'din', 'Dinv29913' => 'din', 'Dinv34580' => 'din', 'Dinv34582' => 'din', 'Dinv44632' => 'din', 'Duzib052G0266' => 'dzi', 'Duzib133G0907' => 'dzi', 'Duzib133G1034' => 'dzi', 'Duzib138G0207' => 'dzi', 'Duzib138G0491' => 'dzi', 'Duzib151G0812' => 'dzi', 'Duzib151G1166' => 'dzi', 'Duzib168G0192' => 'dzi', 'Duzib211G0077' => 'dzi', 'Duzib212G0429' => 'dzi', 'Duzib212G0472' => 'dzi', 'ECA233G2617' => 'eca', 'ECA236G4188' => 'eca', 'ECA240G0936' => 'eca', 'ECA240G1129' => 'eca', 'ECA247G0623' => 'eca', 'EL10Ac5g10451' => 'bvu', 'EL10Ac5g10453' => 'bvu', 'EL10Ac5g10894' => 'bvu', 'Eucgr.H00192' => 'egr', 'Eucgr.H00193' => 'egr', 'Eucgr.H00194' => 'egr', 'Eucgr.J01562' => 'egr', 'Eucgr.K03301' => 'egr', 'FAN02G0632' => 'fan', 'FAN05G5378' => 'fan', 'FAN09G3247' => 'fan', 'FAN12G0435' => 'fan', 'FAN12G2426' => 'fan', 'FAN14G1707' => 'fan', 'FAN14G4725' => 'fan', 'FAN15G2071' => 'fan', 'FAN17G3065' => 'fan', 'FAN19G1376' => 'fan', 'FAN20G0354' => 'fan', 'FAN20G2429' => 'fan', 'FAN20G2658' => 'fan', 'FAN24G2343' => 'fan', 'FAN27G2362' => 'fan', 'FAN28G1765' => 'fan', 'FvH4_1g16020' => 'fve', 'FvH4_2g04890' => 'fve', 'FvH4_2g22270' => 'fve', 'FvH4_4g02630' => 'fve', 'FvH4_4g02640' => 'fve', 'FvH4_6g02650' => 'fve', 'Glyma.02G140600' => 'gma', 'Glyma.03G159900' => 'gma', 'Glyma.05G234800' => 'gma', 'Glyma.07G269600' => 'gma', 'Glyma.08G042300' => 'gma', 'Glyma.10G033500' => 'gma', 'Glyma.10G185200' => 'gma', 'Glyma.17G004300' => 'gma', 'Glyma.19G161900' => 'gma', 'Glyma.20G205100' => 'gma', 'Glyma.20G205200' => 'gma', 'Gohir.A01G139101' => 'ghi', 'Gohir.A02G035600' => 'ghi', 'Gohir.A02G117901' => 'ghi', 'Gohir.A07G210100' => 'ghi', 'Gohir.A07G210200' => 'ghi', 'Gohir.A08G061100' => 'ghi', 'Gohir.A09G223000' => 'ghi', 'Gohir.A09G223100' => 'ghi', 'Gohir.A10G113900' => 'ghi', 'Gohir.A10G114000' => 'ghi', 'Gohir.D02G042300' => 'ghi', 'Gohir.D07G216100' => 'ghi', 'Gohir.D07G216200' => 'ghi', 'Gohir.D08G070400' => 'ghi', 'Gohir.D09G225000' => 'ghi', 'Gohir.D09G225100' => 'ghi', 'Gohir.D10G152300' => 'ghi', 'Gohir.D10G153200' => 'ghi', 'Gohir.D11G133701' => 'ghi', 'Gorai.004G074100' => 'gra', 'Gorai.005G046800' => 'gra', 'Gorai.006G246500' => 'gra', 'Gorai.006G246600' => 'gra', 'Gorai.007G142900' => 'gra', 'Gorai.011G171000' => 'gra', 'Gorai.011G171100' => 'gra', 'Gorai.013G104300' => 'gra', 'Gorai.013G104400' => 'gra', 'GSVIVG01000754001' => 'vvi', 'GSVIVG01000756001' => 'vvi', 'GSVIVG01010903001' => 'vvi', 'GSVIVG01017623001' => 'vvi', 'GSVIVG01018113001' => 'vvi', 'GSVIVG01018116001' => 'vvi', 'GSVIVG01018118001' => 'vvi', 'HanXRQChr03g0076211' => 'han', 'HanXRQChr03g0092431' => 'han', 'HanXRQChr03g0092441' => 'han', 'HanXRQChr03g0092591' => 'han', 'HanXRQChr03g0092671' => 'han', 'HanXRQChr03g0092681' => 'han', 'HanXRQChr03g0092691' => 'han', 'HanXRQChr03g0092701' => 'han', 'HanXRQChr03g0092721' => 'han', 'HanXRQChr03g0092731' => 'han', 'HanXRQChr04g0113681' => 'han', 'HanXRQChr10g0281371' => 'han', 'HanXRQChr11g0337141' => 'han', 'HanXRQChr13g0424521' => 'han', 'HanXRQChr13g0424531' => 'han', 'HanXRQChr13g0424541' => 'han', 'HanXRQChr16g0498221' => 'han', 'Haze_04377' => 'cav', 'Haze_11298' => 'cav', 'Haze_24547' => 'cav', 'Haze_24550' => 'cav', 'Haze_26587' => 'cav', 'Hma1.2p1_0650F.1_g195410' => 'hma', 'Hma1.2p1_0893F.1_g233470' => 'hma', 'HPP92_006508' => 'vpl', 'HPP92_024780' => 'vpl', 'Hund02688' => 'sun', 'Hund09380' => 'sun', 'Hund09381' => 'sun', 'Hund09832' => 'sun', 'Hund09833' => 'sun', 'Hund11351' => 'sun', 'Hund11513' => 'sun', 'Lalb_Chr06g0162591' => 'lal', 'Lalb_Chr06g0162601' => 'lal', 'Lalb_Chr06g0169321' => 'lal', 'Lalb_Chr09g0330951' => 'lal', 'Lalb_Chr16g0387631' => 'lal', 'Lalb_Chr21g0306241' => 'lal', 'Lalb_Chr25g0290051' => 'lal', 'Lalb_Chr25g0290061' => 'lal', 'Lalb_Chr25g0290071' => 'lal', 'Lj1g0003876' => 'lja', 'Lj1P1207T36' => 'lonja', 'Lj2C1156G12' => 'lonja', 'Lj3A793G39' => 'lonja', 'Lj3C580G2' => 'lonja', 'Lj3C780G2' => 'lonja', 'Lj3C780T4' => 'lonja', 'Lj3C793G9' => 'lonja', 'Lj4g0012960' => 'lja', 'Lj5g0021252' => 'lja', 'Lj5g0021484' => 'lja', 'Lj5g0024528' => 'lja', 'Lj6A399T12' => 'lonja', 'Lj6A656G65' => 'lonja', 'Lsat_1_v5_gn_3_125500' => 'lsa', 'Lsat_1_v5_gn_3_125540' => 'lsa', 'Lsat_1_v5_gn_5_72701' => 'lsa', 'Lsat_1_v5_gn_8_91560' => 'lsa', 'Lsat_1_v5_gn_9_9640' => 'lsa', 'Manes.01G200600' => 'mes', 'Manes.01G200700' => 'mes', 'Manes.03G168900' => 'mes', 'Manes.03G169000' => 'mes', 'Manes.05G085801' => 'mes', 'Manes.05G086200' => 'mes', 'Manes.15G036700' => 'mes', 'Manes.15G036900' => 'mes', 'Mapoly0004s0172' => 'mpo', 'Mapoly0023s0001' => 'mpo', 'Mapoly0142s0012' => 'mpo', 'MBI01_g32854_MAGBIO' => 'mbi', 'MBI11_g24427_MAGBIO' => 'mbi', 'MBI11_g47319_MAGBIO' => 'mbi', 'MCO01G433' => 'mco', 'MD00G1187800' => 'mdo', 'MD04G1226500' => 'mdo', 'MD05G1203900' => 'mdo', 'MD10G1191100' => 'mdo', 'MD12G1243500' => 'mdo', 'MD13G1207000' => 'mdo', 'MD13G1207100' => 'mdo', 'MD16G1208600' => 'mdo', 'Medtr1g050352' => 'mtr', 'Medtr1g070385' => 'mtr', 'Medtr1g070450' => 'mtr', 'Medtr1g075200' => 'mtr', 'Medtr1g075250' => 'mtr', 'Medtr1g075260' => 'mtr', 'Medtr1g475250' => 'mtr', 'Medtr4g075450' => 'mtr', 'Medtr7g096300' => 'mtr', 'Medtr8g105110' => 'mtr', 'MELO3C006470.2' => 'cme', 'MELO3C006471.2' => 'cme', 'MELO3C020772.2' => 'cme', 'MELO3C026780.2' => 'cme', 'MELO3C026781.2' => 'cme', 'Migut.D00390' => 'egut', 'Migut.G00435' => 'egut', 'Migut.G00436' => 'egut', 'Migut.G00718' => 'egut', 'MSTRG.21891' => 'ama', 'MSTRG.26910' => 'ama', 'MSTRG.4099' => 'ama', 'MSTRG.9925' => 'ama', 'Nitab4.5_0000165g0010' => 'nta', 'Nitab4.5_0000209g0180' => 'nta', 'Nitab4.5_0000244g0440' => 'nta', 'Nitab4.5_0000525g0220' => 'nta', 'Nitab4.5_0001597g0020' => 'nta', 'Nitab4.5_0001878g0040' => 'nta', 'Nitab4.5_0001878g0060' => 'nta', 'Nitab4.5_0002838g0100' => 'nta', 'Nitab4.5_0002838g0120' => 'nta', 'Nitab4.5_0004798g0030' => 'nta', 'Nitab4.5_0005420g0010' => 'nta', 'Nitab4.5_0005507g0010' => 'nta', 'Nitab4.5_0005574g0020' => 'nta', 'Nitab4.5_0005838g0010' => 'nta', 'Nitab4.5_0010580g0020' => 'nta', 'Nn1g02599' => 'nnu', 'Nn1g02608' => 'nnu', 'Nn3g17742' => 'nnu', 'Nn3g19534' => 'nnu', 'Nn3g19535' => 'nnu', 'Oeu008790.1' => 'oeu', 'Oeu008792.1' => 'oeu', 'Oeu032590.1' => 'oeu', 'Oeu035349.1' => 'oeu', 'Oeu049791.1' => 'oeu', 'Os01g0774500' => 'osa', 'Os03g0628800' => 'osa', 'Os03g0798600' => 'osa', 'Os05g0508800' => 'osa', 'Peaxi162Scf00036g02018' => 'pax', 'Peaxi162Scf00578g00032' => 'pax', 'Peaxi162Scf00578g00317' => 'pax', 'Peaxi162Scf00785g00114' => 'pax', 'Peaxi162Scf00813g00119' => 'pax', 'Peaxi162Scf00906g00227' => 'pax', 'PGR004G0875' => 'pgr', 'PGR004G2424' => 'pgr', 'PGR031G1239' => 'pgr', 'PGR031G2474' => 'pgr', 'PGR044G0423' => 'pgr', 'PGSC0003DMG400001128' => 'stu', 'PGSC0003DMG400007336' => 'stu', 'PGSC0003DMG400016318' => 'stu', 'PGSC0003DMG400016319' => 'stu', 'PGSC0003DMG400018074' => 'stu', 'Phvul.001G157700' => 'pvu', 'Phvul.002G148550' => 'pvu', 'Phvul.002G320200' => 'pvu', 'Phvul.003G089200' => 'pvu', 'Phvul.007G126000' => 'pvu', 'Phvul.007G126100' => 'pvu', 'Phvul.007G178000' => 'pvu', 'Phvul.007G178200' => 'pvu', 'Potri.002G043000' => 'ptr', 'Potri.002G043200' => 'ptr', 'Potri.003G123750' => 'ptr', 'Potri.005G055401' => 'ptr', 'Potri.005G219700' => 'ptr', 'Potri.005G220000' => 'ptr', 'Potri.008G161901' => 'ptr', 'Potri.008G162000' => 'ptr', 'Potri.008G162400' => 'ptr', 'Potri.010G076900' => 'ptr', 'Pp3c12_9180' => 'ppa', 'Pp3c13_19770' => 'ppa', 'Pp3c14_22950' => 'ppa', 'Pp3c16_12160' => 'ppa', 'Pp3c27_7820' => 'ppa', 'Pp3c2_3490' => 'ppa', 'Pp3c3_23700' => 'ppa', 'Pp3c3_36520' => 'ppa', 'Pp3c4_15250' => 'ppa', 'PRCOL_00007002' => 'pco', 'Prupe.1G030600' => 'ppe', 'Prupe.1G030700' => 'ppe', 'Prupe.6G345200' => 'ppe', 'Prupe.8G230300' => 'ppe', 'Prupe.8G230500' => 'ppe', 'Psat3g059600' => 'psa', 'Psat5g200920' => 'psa', 'Psat6g056440' => 'psa', 'Psat6g057360' => 'psa', 'Psat6g134120' => 'psa', 'Psat6g134160' => 'psa', 'Psat7g008640' => 'psa', 'Psat7g185240' => 'psa', 'PSO017G1330' => 'pso', 'PSO063G6097' => 'pso', 'PSO170G0835' => 'pso', 'PSO170G2499' => 'pso', 'PSO210G5058' => 'pso', 'PSO210G6154' => 'pso', 'PSO585G0031' => 'pso', 'PSO832G0264' => 'pso', 'PSO832G4288' => 'pso', 'QL03p027355' => 'qlo', 'QL03p027430' => 'qlo', 'QL04p081380' => 'qlo', 'QL06p015642' => 'qlo', 'QL06p015650' => 'qlo', 'QL06p015686' => 'qlo', 'QL12p042927' => 'qlo', 'QL93p1863_0035' => 'qlo', 'RcHm_v2.0_Chr3g0450581' => 'rch', 'RcHm_v2.0_Chr4g0390371' => 'rch', 'RcHm_v2.0_Chr4g0390381' => 'rch', 'RcHm_v2.0_Chr4g0390491' => 'rch', 'RcHm_v2.0_Chr4g0390501' => 'rch', 'RcHm_v2.0_Chr6g0289231' => 'rch', 'Rhsim04G0190400' => 'rsi', 'Rhsim04G0190500' => 'rsi', 'Rhsim04G0190600' => 'rsi', 'Rhsim13G0031400' => 'rsi', 'Rhsim13G0165600' => 'rsi', 'RhsimUnG0114600' => 'rsi', 'RhsimUnG0114700' => 'rsi', 'Sabra02G0034800' => 'sbr', 'Sabra02G0035100' => 'sbr', 'Sabra05G0168600' => 'sbr', 'Sabra05G0168800' => 'sbr', 'Sabra08G0123700' => 'sbr', 'Sabra10G0031900' => 'sbr', 'Sabra13G0039000' => 'sbr', 'SalBow2G0782' => 'sbo', 'SalBow2G1403' => 'sbo', 'SalBow4G0074' => 'sbo', 'SalBow4G2635' => 'sbo', 'SalBow5G3010' => 'sbo', 'Sc05g0000870' => 'sci', 'Sc05g0000890' => 'sci', 'Sc13g0005000' => 'sci', 'Sc13g0005030' => 'sci', 'Sc19g0003790' => 'sci', 'Sc19g0003800' => 'sci', 'Sed0003467' => 'sed', 'Sed0009355' => 'sed', 'Sed0009894' => 'sed', 'Sed0011972' => 'sed', 'Sed0021483' => 'sed', 'Sed0021750' => 'sed', 'Sed0026279' => 'sed', 'SEGI_05312' => 'sgi', 'SEGI_10112' => 'sgi', 'SEGI_15835' => 'sgi', 'SEGI_30386' => 'sgi', 'SEGI_34122' => 'sgi', 'SEGI_35063' => 'sgi', 'SGA_v2.0_scaffold101G29794' => 'sas', 'SGA_v2.0_scaffold1G00573' => 'sas', 'SGA_v2.0_scaffold79G25637' => 'sas', 'SGA_v2.0_scaffold88G27283' => 'sas', 'SGA_v2.0_scaffold88G27285' => 'sas', 'SGA_v2.0_scaffold88G27331' => 'sas', 'SHI09937' => 'shi', 'SMO119G0302' => 'smo', 'SMO137G0231' => 'smo', 'SMO367G1151' => 'smo', 'Solyc02g082000.3' => 'sly', 'Solyc06g031670.3' => 'sly', 'Solyc06g053810.3' => 'sly', 'Solyc07g025457.1' => 'sly', 'Solyc08g059740.1' => 'sly', 'Solyc08g059750.3' => 'sly', 'Solyc09g083370.3' => 'sly', 'Solyc12g038950.3' => 'sly', 'Sopen02g026630' => 'spe', 'Sopen06g018930' => 'spe', 'Sopen06g018940' => 'spe', 'Sopen08g009460' => 'spe', 'Sopen09g032290' => 'spe', 'Sp1g03080' => 'spa', 'Sp1g03090' => 'spa', 'Sp1g05480' => 'spa', 'Sp2g07860' => 'spa', 'Sp2g08430' => 'spa', 'Sp2g08440' => 'spa', 'Sp2g26200' => 'spa', 'Sp4g13170' => 'spa', 'Sp6g33840' => 'spa', 'SpUn1204_0010' => 'spa', 'TAR365G0908' => 'tar', 'TAR381G1270' => 'tar', 'TAR381G1651' => 'tar', 'TAR625G1131' => 'tar', 'TAR633G0962' => 'tar', 'TAR633G1729' => 'tar', 'TAR633G1864' => 'tar', 'TAR636G0221' => 'tar', 'TAR636G0314' => 'tar', 'TAR636G3202' => 'tar', 'THA.LOC104800805' => 'tha', 'THA.LOC104801096' => 'tha', 'THA.LOC104801555' => 'tha', 'THA.LOC104808491' => 'tha', 'THA.LOC104808595' => 'tha', 'THA.LOC104815985' => 'tha', 'THA.LOC104822250' => 'tha', 'THA.LOC104826071' => 'tha', 'Thecc.01G265200' => 'tca', 'Thecc.01G265300' => 'tca', 'Thecc.01G265700' => 'tca', 'Thecc.03G109100' => 'tca', 'Thecc.04G245900' => 'tca', 'Thecc.04G246000' => 'tca', 'Thhalv10003334m.g' => 'esa', 'Thhalv10005508m.g' => 'esa', 'Thhalv10005643m.g' => 'esa', 'Thhalv10007316m.g' => 'esa', 'Thhalv10009006m.g' => 'esa', 'Thhalv10009309m.g' => 'esa', 'Thhalv10014917m.g' => 'esa', 'Thhalv10014919m.g' => 'esa', 'Thhalv10015393m.g' => 'esa', 'Thhalv10016515m.g' => 'esa', 'Thhalv10029242m.g' => 'esa', 'TPR.G16654' => 'tpr', 'TPR.G20589' => 'tpr', 'TPR.G23029' => 'tpr', 'TPR.G27731' => 'tpr', 'TPR.G28889' => 'tpr', 'TPR.G28899' => 'tpr', 'TPR.G30846' => 'tpr', 'TPR.G5452' => 'tpr', 'TPR.G5713' => 'tpr', 'TPR.G9046' => 'tpr', 'TPR.G9061' => 'tpr', 'TWI09G1075' => 'twi', 'TWI12G0806' => 'twi', 'TWI18G0108' => 'twi', 'TWI53G1361' => 'twi', 'TWI73G0185' => 'twi', 'TWI73G0427' => 'twi', 'unitig_37.g12001' => 'ugi', 'unitig_747.g21660' => 'ugi', 'unitig_748.g7232' => 'ugi', 'unitig_748.g7315' => 'ugi', 'unitig_85.g27262' => 'ugi', 'unitig_92.g28220' => 'ugi', 'vmacro02632' => 'vma', 'vmacro08410' => 'vma', 'vmacro08411' => 'vma', 'vmacro15407' => 'vma', 'VMungo0251G3619' => 'vmu', 'VMungo0720G1204' => 'vmu', 'VMungo0720G1918' => 'vmu', 'VMungo0720G2387' => 'vmu', 'VMungo0720G2961' => 'vmu', 'VMungo1215G2154' => 'vmu', 'VMungo1383G2411' => 'vmu', 'Zm00001eb051130' => 'zma', 'Zm00001eb116830' => 'zma', 'Zm00001eb116850' => 'zma', 'Zm00001eb151740' => 'zma', 'Zm00001eb292360' => 'zma', 'Zm00001eb301640' => 'zma' ), 'gf_id' => 'HOM05D000856', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000856' ), 'data_identifier' => 'HOM05D000856', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000856', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p00010' => 'bna', 'A03p04160' => 'bna', 'A03p17160' => 'bna', 'A04p23370' => 'bna', 'A05p14860' => 'bna', 'A08p37020' => 'bna', 'A09p08050' => 'bna', 'A09p66800' => 'bna', 'A09p67940' => 'bna', 'A10p02680' => 'bna', 'A10p05320' => 'bna', 'Aa31LG1G20560' => 'aar', 'Aa31LG1G20610' => 'aar', 'Aa31LG1G7810' => 'aar', 'Aa31LG5G3590' => 'aar', 'Aa31LG5G6140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3819' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4683' => 'aag', 'Actinidia04480' => 'ach', 'Actinidia05466' => 'ach', 'Actinidia08445' => 'ach', 'Actinidia21170' => 'ach', 'Actinidia24812' => 'ach', 'Actinidia24951' => 'ach', 'Actinidia40088' => 'ach', 'Ah.02g111660' => 'amhyb', 'Ah.11g048900' => 'amhyb', 'Ah.11g049910' => 'amhyb', 'AL1G13870' => 'aly', 'AL1G13880' => 'aly', 'AL1G16760' => 'aly', 'AL390U10020' => 'aly', 'AL4G25520' => 'aly', 'AL6G19890' => 'aly', 'AL6G19900' => 'aly', 'AL6G19910' => 'aly', 'AL8G40100' => 'aly', 'Aqoxy2G03562' => 'aox', 'Aqoxy5G00316' => 'aox', 'Aqoxy5G00926' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1628KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1H403S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2FU6SJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.882I6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8YRY2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YN1SN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AF70II' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZA8L1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F916KL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHRD8H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KTZ8QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S22EMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8M29T' => 'arhy', 'AT1G04270' => 'ath', 'AT1G04280' => 'ath', 'AT1G06750' => 'ath', 'AT1G33850' => 'ath', 'AT2G30630' => 'ath', 'AT5G09490' => 'ath', 'AT5G09500' => 'ath', 'AT5G09510' => 'ath', 'AT5G43640' => 'ath', 'AT5G63070' => 'ath', 'ATR0605G315' => 'atr', 'Atru.chr11.175' => 'acertr', 'Atru.chr11.653' => 'acertr', 'Atru.chr3.1616' => 'acertr', 'Atru.chr4.2230' => 'acertr', 'Atru.chr4.2232' => 'acertr', 'Atru.chr5.1598' => 'acertr', 'Atru.chr5.1600' => 'acertr', 'Atru.chr5.2188' => 'acertr', 'AUR62008326' => 'cqu', 'AUR62011922' => 'cqu', 'AUR62011924' => 'cqu', 'AUR62021771' => 'cqu', 'AUR62032237' => 'cqu', 'AUR62032240' => 'cqu', 'BcaB01g05572' => 'bca', 'BcaB02g10337' => 'bca', 'BcaB04g19944' => 'bca', 'BcaB05g21548' => 'bca', 'BcaB05g21549' => 'bca', 'BcaB05g23227' => 'bca', 'BcaB06g26256' => 'bca', 'BcaB06g26257' => 'bca', 'BcaB06g28379' => 'bca', 'BcaC02g11159' => 'bca', 'BcaC03g13258' => 'bca', 'BcaC03g13259' => 'bca', 'BcaC05g24456' => 'bca', 'BcaC05g24457' => 'bca', 'BcaC07g36922' => 'bca', 'BcaC07g36923' => 'bca', 'BcaC07g42050' => 'bca', 'BcaC07g42176' => 'bca', 'BcaC07g42195' => 'bca', 'BcaC07g42196' => 'bca', 'BcaNung06674' => 'bca', 'BolC2t06351H' => 'bol', 'BolC2t06352H' => 'bol', 'BolC3t12993H' => 'bol', 'BolC4t23525H' => 'bol', 'BolC4t27475H' => 'bol', 'BolC5t29025H' => 'bol', 'BolC5t29026H' => 'bol', 'BolC8t46898H' => 'bol', 'BolC8t46899H' => 'bol', 'BolC8t52630H' => 'bol', 'BolC8t52765H' => 'bol', 'BolC9t53824H' => 'bol', 'BraA03t09760Z' => 'bra', 'BraA03t10990Z' => 'bra', 'BraA05t20413Z' => 'bra', 'BraA08t35602Z' => 'bra', 'BraA09t36458Z' => 'bra', 'BraA09t42018Z' => 'bra', 'BraA09t42129Z' => 'bra', 'BraA10t42536Z' => 'bra', 'BraA10t42537Z' => 'bra', 'C01p10690' => 'bna', 'C02p03890' => 'bna', 'C02p03900' => 'bna', 'C03p04620' => 'bna', 'C04p19870' => 'bna', 'C04p59670' => 'bna', 'C05p02460' => 'bna', 'C05p02470' => 'bna', 'C08p00980' => 'bna', 'C08p00990' => 'bna', 'C08p51030' => 'bna', 'C08p52360' => 'bna', 'C09p09120' => 'bna', 'CAN.G19.15' => 'can', 'CAN.G251.10' => 'can', 'CAN.G251.9' => 'can', 'CAN.G398.24' => 'can', 'CAN.G410.32' => 'can', 'CAN.G881.2' => 'can', 'CANSAT01G3025' => 'cansat', 'CANSAT78G1211' => 'cansat', 'CANSAT78G1218' => 'cansat', 'CANSAT78G1521' => 'cansat', 'CANSAT78G1670' => 'cansat', 'CARHR003600' => 'chi', 'CARHR003610' => 'chi', 'CARHR006290' => 'chi', 'CARHR006430' => 'chi', 'CARHR124110' => 'chi', 'CARHR203870' => 'chi', 'CARHR203880' => 'chi', 'CARHR203890' => 'chi', 'CARHR276880' => 'chi', 'Carub.0001s0346' => 'cru', 'Carub.0001s0347' => 'cru', 'Carub.0001s0607' => 'cru', 'Carub.0003s2768' => 'cru', 'Carub.0003s2769' => 'cru', 'Carub.0004s1178' => 'cru', 'Carub.0006s0806' => 'cru', 'Carub.0006s0807' => 'cru', 'Carub.0006s0808' => 'cru', 'Carub.0008s0501' => 'cru', 'Carub.0008s2379' => 'cru', 'Ca_08655_v3' => 'car', 'Ca_08922_v3' => 'car', 'Ca_08923_v3' => 'car', 'Ca_09119_v3' => 'car', 'Ca_09703_v3' => 'car', 'Ca_09705_v3' => 'car', 'Ca_09835_v3' => 'car', 'Ca_26403_v3' => 'car', 'Ca_30719_v3' => 'car', 'CBR_g17958' => 'cbr', 'CBR_g40516' => 'cbr', 'Cc00_g05350' => 'ccan', 'Cc01_g18690' => 'ccan', 'Cc03_g04830' => 'ccan', 'Cc03_g04850' => 'ccan', 'CDE02G4469' => 'cde', 'CDE06G0883' => 'cde', 'CDE06G1295' => 'cde', 'CDE06G1390' => 'cde', 'CDE07G0584' => 'cde', 'CDE07G1084' => 'cde', 'CDE08G1259' => 'cde', 'Cfa002341' => 'cfa', 'Cfa024337' => 'cfa', 'Ciclev10004749m.g' => 'ccl', 'Ciclev10006127m.g' => 'ccl', 'Ciclev10019720m.g' => 'ccl', 'Ciclev10022652m.g' => 'ccl', 'CiPaw.01G190400' => 'cil', 'CiPaw.01G190500' => 'cil', 'CiPaw.02G116400' => 'cil', 'CiPaw.02G116500' => 'cil', 'CiPaw.04G183000' => 'cil', 'CiPaw.04G183300' => 'cil', 'ClCG05G004610' => 'cla', 'ClCG05G004620' => 'cla', 'ClCG06G006730' => 'cla', 'ClCG06G006740' => 'cla', 'ClCG11G003690' => 'cla', 'COL.COLO4_08276' => 'col', 'COL.COLO4_08277' => 'col', 'COL.COLO4_15787' => 'col', 'COL.COLO4_15789' => 'col', 'Cpa.g.c44815' => 'cpa', 'Cpa.g.sc52.144' => 'cpa', 'Cpa.g.sc58.46' => 'cpa', 'Cpa.g.sc58.47' => 'cpa', 'Cre08.g360900' => 'cre', 'CsaV3_2G013030' => 'csa', 'CsaV3_2G013050' => 'csa', 'CsaV3_2G015620' => 'csa', 'CsaV3_3G012590' => 'csa', 'CsaV3_3G012600' => 'csa', 'CSS0001641' => 'camsi', 'CSS0008310' => 'camsi', 'CSS0013011' => 'camsi', 'CSS0017147' => 'camsi', 'CSS0022970' => 'camsi', 'CSS0025655' => 'camsi', 'CSS0028665' => 'camsi', 'CSS0029117' => 'camsi', 'CSS0032024' => 'camsi', 'CSS0039681' => 'camsi', 'CSS0046516' => 'camsi', 'CSS0050307' => 'camsi', 'DCAR_005871' => 'dca', 'DCAR_007342' => 'dca', 'DCAR_024228' => 'dca', 'DCAR_027277' => 'dca', 'DCAR_030718' => 'dca', 'Dinv20287' => 'din', 'Dinv22461' => 'din', 'Dinv22464' => 'din', 'Dinv29912' => 'din', 'Dinv29913' => 'din', 'Dinv34580' => 'din', 'Dinv34582' => 'din', 'Dinv44632' => 'din', 'Duzib052G0266' => 'dzi', 'Duzib133G0907' => 'dzi', 'Duzib133G1034' => 'dzi', 'Duzib138G0207' => 'dzi', 'Duzib138G0491' => 'dzi', 'Duzib151G0812' => 'dzi', 'Duzib151G1166' => 'dzi', 'Duzib168G0192' => 'dzi', 'Duzib211G0077' => 'dzi', 'Duzib212G0429' => 'dzi', 'Duzib212G0472' => 'dzi', 'ECA233G2617' => 'eca', 'ECA236G4188' => 'eca', 'ECA240G0936' => 'eca', 'ECA240G1129' => 'eca', 'ECA247G0623' => 'eca', 'EL10Ac5g10451' => 'bvu', 'EL10Ac5g10453' => 'bvu', 'EL10Ac5g10894' => 'bvu', 'Eucgr.H00192' => 'egr', 'Eucgr.H00193' => 'egr', 'Eucgr.H00194' => 'egr', 'Eucgr.J01562' => 'egr', 'Eucgr.K03301' => 'egr', 'FAN02G0632' => 'fan', 'FAN05G5378' => 'fan', 'FAN09G3247' => 'fan', 'FAN12G0435' => 'fan', 'FAN12G2426' => 'fan', 'FAN14G1707' => 'fan', 'FAN14G4725' => 'fan', 'FAN15G2071' => 'fan', 'FAN17G3065' => 'fan', 'FAN19G1376' => 'fan', 'FAN20G0354' => 'fan', 'FAN20G2429' => 'fan', 'FAN20G2658' => 'fan', 'FAN24G2343' => 'fan', 'FAN27G2362' => 'fan', 'FAN28G1765' => 'fan', 'FvH4_1g16020' => 'fve', 'FvH4_2g04890' => 'fve', 'FvH4_2g22270' => 'fve', 'FvH4_4g02630' => 'fve', 'FvH4_4g02640' => 'fve', 'FvH4_6g02650' => 'fve', 'Glyma.02G140600' => 'gma', 'Glyma.03G159900' => 'gma', 'Glyma.05G234800' => 'gma', 'Glyma.07G269600' => 'gma', 'Glyma.08G042300' => 'gma', 'Glyma.10G033500' => 'gma', 'Glyma.10G185200' => 'gma', 'Glyma.17G004300' => 'gma', 'Glyma.19G161900' => 'gma', 'Glyma.20G205100' => 'gma', 'Glyma.20G205200' => 'gma', 'Gohir.A01G139101' => 'ghi', 'Gohir.A02G035600' => 'ghi', 'Gohir.A02G117901' => 'ghi', 'Gohir.A07G210100' => 'ghi', 'Gohir.A07G210200' => 'ghi', 'Gohir.A08G061100' => 'ghi', 'Gohir.A09G223000' => 'ghi', 'Gohir.A09G223100' => 'ghi', 'Gohir.A10G113900' => 'ghi', 'Gohir.A10G114000' => 'ghi', 'Gohir.D02G042300' => 'ghi', 'Gohir.D07G216100' => 'ghi', 'Gohir.D07G216200' => 'ghi', 'Gohir.D08G070400' => 'ghi', 'Gohir.D09G225000' => 'ghi', 'Gohir.D09G225100' => 'ghi', 'Gohir.D10G152300' => 'ghi', 'Gohir.D10G153200' => 'ghi', 'Gohir.D11G133701' => 'ghi', 'Gorai.004G074100' => 'gra', 'Gorai.005G046800' => 'gra', 'Gorai.006G246500' => 'gra', 'Gorai.006G246600' => 'gra', 'Gorai.007G142900' => 'gra', 'Gorai.011G171000' => 'gra', 'Gorai.011G171100' => 'gra', 'Gorai.013G104300' => 'gra', 'Gorai.013G104400' => 'gra', 'GSVIVG01000754001' => 'vvi', 'GSVIVG01000756001' => 'vvi', 'GSVIVG01010903001' => 'vvi', 'GSVIVG01017623001' => 'vvi', 'GSVIVG01018113001' => 'vvi', 'GSVIVG01018116001' => 'vvi', 'GSVIVG01018118001' => 'vvi', 'HanXRQChr03g0076211' => 'han', 'HanXRQChr03g0092431' => 'han', 'HanXRQChr03g0092441' => 'han', 'HanXRQChr03g0092591' => 'han', 'HanXRQChr03g0092671' => 'han', 'HanXRQChr03g0092681' => 'han', 'HanXRQChr03g0092691' => 'han', 'HanXRQChr03g0092701' => 'han', 'HanXRQChr03g0092721' => 'han', 'HanXRQChr03g0092731' => 'han', 'HanXRQChr04g0113681' => 'han', 'HanXRQChr10g0281371' => 'han', 'HanXRQChr11g0337141' => 'han', 'HanXRQChr13g0424521' => 'han', 'HanXRQChr13g0424531' => 'han', 'HanXRQChr13g0424541' => 'han', 'HanXRQChr16g0498221' => 'han', 'Haze_04377' => 'cav', 'Haze_11298' => 'cav', 'Haze_24547' => 'cav', 'Haze_24550' => 'cav', 'Haze_26587' => 'cav', 'Hma1.2p1_0650F.1_g195410' => 'hma', 'Hma1.2p1_0893F.1_g233470' => 'hma', 'HPP92_006508' => 'vpl', 'HPP92_024780' => 'vpl', 'Hund02688' => 'sun', 'Hund09380' => 'sun', 'Hund09381' => 'sun', 'Hund09832' => 'sun', 'Hund09833' => 'sun', 'Hund11351' => 'sun', 'Hund11513' => 'sun', 'Lalb_Chr06g0162591' => 'lal', 'Lalb_Chr06g0162601' => 'lal', 'Lalb_Chr06g0169321' => 'lal', 'Lalb_Chr09g0330951' => 'lal', 'Lalb_Chr16g0387631' => 'lal', 'Lalb_Chr21g0306241' => 'lal', 'Lalb_Chr25g0290051' => 'lal', 'Lalb_Chr25g0290061' => 'lal', 'Lalb_Chr25g0290071' => 'lal', 'Lj1g0003876' => 'lja', 'Lj1P1207T36' => 'lonja', 'Lj2C1156G12' => 'lonja', 'Lj3A793G39' => 'lonja', 'Lj3C580G2' => 'lonja', 'Lj3C780G2' => 'lonja', 'Lj3C780T4' => 'lonja', 'Lj3C793G9' => 'lonja', 'Lj4g0012960' => 'lja', 'Lj5g0021252' => 'lja', 'Lj5g0021484' => 'lja', 'Lj5g0024528' => 'lja', 'Lj6A399T12' => 'lonja', 'Lj6A656G65' => 'lonja', 'Lsat_1_v5_gn_3_125500' => 'lsa', 'Lsat_1_v5_gn_3_125540' => 'lsa', 'Lsat_1_v5_gn_5_72701' => 'lsa', 'Lsat_1_v5_gn_8_91560' => 'lsa', 'Lsat_1_v5_gn_9_9640' => 'lsa', 'Manes.01G200600' => 'mes', 'Manes.01G200700' => 'mes', 'Manes.03G168900' => 'mes', 'Manes.03G169000' => 'mes', 'Manes.05G085801' => 'mes', 'Manes.05G086200' => 'mes', 'Manes.15G036700' => 'mes', 'Manes.15G036900' => 'mes', 'Mapoly0004s0172' => 'mpo', 'Mapoly0023s0001' => 'mpo', 'Mapoly0142s0012' => 'mpo', 'MBI01_g32854_MAGBIO' => 'mbi', 'MBI11_g24427_MAGBIO' => 'mbi', 'MBI11_g47319_MAGBIO' => 'mbi', 'MCO01G433' => 'mco', 'MD00G1187800' => 'mdo', 'MD04G1226500' => 'mdo', 'MD05G1203900' => 'mdo', 'MD10G1191100' => 'mdo', 'MD12G1243500' => 'mdo', 'MD13G1207000' => 'mdo', 'MD13G1207100' => 'mdo', 'MD16G1208600' => 'mdo', 'Medtr1g050352' => 'mtr', 'Medtr1g070385' => 'mtr', 'Medtr1g070450' => 'mtr', 'Medtr1g075200' => 'mtr', 'Medtr1g075250' => 'mtr', 'Medtr1g075260' => 'mtr', 'Medtr1g475250' => 'mtr', 'Medtr4g075450' => 'mtr', 'Medtr7g096300' => 'mtr', 'Medtr8g105110' => 'mtr', 'MELO3C006470.2' => 'cme', 'MELO3C006471.2' => 'cme', 'MELO3C020772.2' => 'cme', 'MELO3C026780.2' => 'cme', 'MELO3C026781.2' => 'cme', 'Migut.D00390' => 'egut', 'Migut.G00435' => 'egut', 'Migut.G00436' => 'egut', 'Migut.G00718' => 'egut', 'MSTRG.21891' => 'ama', 'MSTRG.26910' => 'ama', 'MSTRG.4099' => 'ama', 'MSTRG.9925' => 'ama', 'Nitab4.5_0000165g0010' => 'nta', 'Nitab4.5_0000209g0180' => 'nta', 'Nitab4.5_0000244g0440' => 'nta', 'Nitab4.5_0000525g0220' => 'nta', 'Nitab4.5_0001597g0020' => 'nta', 'Nitab4.5_0001878g0040' => 'nta', 'Nitab4.5_0001878g0060' => 'nta', 'Nitab4.5_0002838g0100' => 'nta', 'Nitab4.5_0002838g0120' => 'nta', 'Nitab4.5_0004798g0030' => 'nta', 'Nitab4.5_0005420g0010' => 'nta', 'Nitab4.5_0005507g0010' => 'nta', 'Nitab4.5_0005574g0020' => 'nta', 'Nitab4.5_0005838g0010' => 'nta', 'Nitab4.5_0010580g0020' => 'nta', 'Nn1g02599' => 'nnu', 'Nn1g02608' => 'nnu', 'Nn3g17742' => 'nnu', 'Nn3g19534' => 'nnu', 'Nn3g19535' => 'nnu', 'Oeu008790.1' => 'oeu', 'Oeu008792.1' => 'oeu', 'Oeu032590.1' => 'oeu', 'Oeu035349.1' => 'oeu', 'Oeu049791.1' => 'oeu', 'Os01g0774500' => 'osa', 'Os03g0628800' => 'osa', 'Os03g0798600' => 'osa', 'Os05g0508800' => 'osa', 'Peaxi162Scf00036g02018' => 'pax', 'Peaxi162Scf00578g00032' => 'pax', 'Peaxi162Scf00578g00317' => 'pax', 'Peaxi162Scf00785g00114' => 'pax', 'Peaxi162Scf00813g00119' => 'pax', 'Peaxi162Scf00906g00227' => 'pax', 'PGR004G0875' => 'pgr', 'PGR004G2424' => 'pgr', 'PGR031G1239' => 'pgr', 'PGR031G2474' => 'pgr', 'PGR044G0423' => 'pgr', 'PGSC0003DMG400001128' => 'stu', 'PGSC0003DMG400007336' => 'stu', 'PGSC0003DMG400016318' => 'stu', 'PGSC0003DMG400016319' => 'stu', 'PGSC0003DMG400018074' => 'stu', 'Phvul.001G157700' => 'pvu', 'Phvul.002G148550' => 'pvu', 'Phvul.002G320200' => 'pvu', 'Phvul.003G089200' => 'pvu', 'Phvul.007G126000' => 'pvu', 'Phvul.007G126100' => 'pvu', 'Phvul.007G178000' => 'pvu', 'Phvul.007G178200' => 'pvu', 'Potri.002G043000' => 'ptr', 'Potri.002G043200' => 'ptr', 'Potri.003G123750' => 'ptr', 'Potri.005G055401' => 'ptr', 'Potri.005G219700' => 'ptr', 'Potri.005G220000' => 'ptr', 'Potri.008G161901' => 'ptr', 'Potri.008G162000' => 'ptr', 'Potri.008G162400' => 'ptr', 'Potri.010G076900' => 'ptr', 'Pp3c12_9180' => 'ppa', 'Pp3c13_19770' => 'ppa', 'Pp3c14_22950' => 'ppa', 'Pp3c16_12160' => 'ppa', 'Pp3c27_7820' => 'ppa', 'Pp3c2_3490' => 'ppa', 'Pp3c3_23700' => 'ppa', 'Pp3c3_36520' => 'ppa', 'Pp3c4_15250' => 'ppa', 'PRCOL_00007002' => 'pco', 'Prupe.1G030600' => 'ppe', 'Prupe.1G030700' => 'ppe', 'Prupe.6G345200' => 'ppe', 'Prupe.8G230300' => 'ppe', 'Prupe.8G230500' => 'ppe', 'Psat3g059600' => 'psa', 'Psat5g200920' => 'psa', 'Psat6g056440' => 'psa', 'Psat6g057360' => 'psa', 'Psat6g134120' => 'psa', 'Psat6g134160' => 'psa', 'Psat7g008640' => 'psa', 'Psat7g185240' => 'psa', 'PSO017G1330' => 'pso', 'PSO063G6097' => 'pso', 'PSO170G0835' => 'pso', 'PSO170G2499' => 'pso', 'PSO210G5058' => 'pso', 'PSO210G6154' => 'pso', 'PSO585G0031' => 'pso', 'PSO832G0264' => 'pso', 'PSO832G4288' => 'pso', 'QL03p027355' => 'qlo', 'QL03p027430' => 'qlo', 'QL04p081380' => 'qlo', 'QL06p015642' => 'qlo', 'QL06p015650' => 'qlo', 'QL06p015686' => 'qlo', 'QL12p042927' => 'qlo', 'QL93p1863_0035' => 'qlo', 'RcHm_v2.0_Chr3g0450581' => 'rch', 'RcHm_v2.0_Chr4g0390371' => 'rch', 'RcHm_v2.0_Chr4g0390381' => 'rch', 'RcHm_v2.0_Chr4g0390491' => 'rch', 'RcHm_v2.0_Chr4g0390501' => 'rch', 'RcHm_v2.0_Chr6g0289231' => 'rch', 'Rhsim04G0190400' => 'rsi', 'Rhsim04G0190500' => 'rsi', 'Rhsim04G0190600' => 'rsi', 'Rhsim13G0031400' => 'rsi', 'Rhsim13G0165600' => 'rsi', 'RhsimUnG0114600' => 'rsi', 'RhsimUnG0114700' => 'rsi', 'Sabra02G0034800' => 'sbr', 'Sabra02G0035100' => 'sbr', 'Sabra05G0168600' => 'sbr', 'Sabra05G0168800' => 'sbr', 'Sabra08G0123700' => 'sbr', 'Sabra10G0031900' => 'sbr', 'Sabra13G0039000' => 'sbr', 'SalBow2G0782' => 'sbo', 'SalBow2G1403' => 'sbo', 'SalBow4G0074' => 'sbo', 'SalBow4G2635' => 'sbo', 'SalBow5G3010' => 'sbo', 'Sc05g0000870' => 'sci', 'Sc05g0000890' => 'sci', 'Sc13g0005000' => 'sci', 'Sc13g0005030' => 'sci', 'Sc19g0003790' => 'sci', 'Sc19g0003800' => 'sci', 'Sed0003467' => 'sed', 'Sed0009355' => 'sed', 'Sed0009894' => 'sed', 'Sed0011972' => 'sed', 'Sed0021483' => 'sed', 'Sed0021750' => 'sed', 'Sed0026279' => 'sed', 'SEGI_05312' => 'sgi', 'SEGI_10112' => 'sgi', 'SEGI_15835' => 'sgi', 'SEGI_30386' => 'sgi', 'SEGI_34122' => 'sgi', 'SEGI_35063' => 'sgi', 'SGA_v2.0_scaffold101G29794' => 'sas', 'SGA_v2.0_scaffold1G00573' => 'sas', 'SGA_v2.0_scaffold79G25637' => 'sas', 'SGA_v2.0_scaffold88G27283' => 'sas', 'SGA_v2.0_scaffold88G27285' => 'sas', 'SGA_v2.0_scaffold88G27331' => 'sas', 'SHI09937' => 'shi', 'SMO119G0302' => 'smo', 'SMO137G0231' => 'smo', 'SMO367G1151' => 'smo', 'Solyc02g082000.3' => 'sly', 'Solyc06g031670.3' => 'sly', 'Solyc06g053810.3' => 'sly', 'Solyc07g025457.1' => 'sly', 'Solyc08g059740.1' => 'sly', 'Solyc08g059750.3' => 'sly', 'Solyc09g083370.3' => 'sly', 'Solyc12g038950.3' => 'sly', 'Sopen02g026630' => 'spe', 'Sopen06g018930' => 'spe', 'Sopen06g018940' => 'spe', 'Sopen08g009460' => 'spe', 'Sopen09g032290' => 'spe', 'Sp1g03080' => 'spa', 'Sp1g03090' => 'spa', 'Sp1g05480' => 'spa', 'Sp2g07860' => 'spa', 'Sp2g08430' => 'spa', 'Sp2g08440' => 'spa', 'Sp2g26200' => 'spa', 'Sp4g13170' => 'spa', 'Sp6g33840' => 'spa', 'SpUn1204_0010' => 'spa', 'TAR365G0908' => 'tar', 'TAR381G1270' => 'tar', 'TAR381G1651' => 'tar', 'TAR625G1131' => 'tar', 'TAR633G0962' => 'tar', 'TAR633G1729' => 'tar', 'TAR633G1864' => 'tar', 'TAR636G0221' => 'tar', 'TAR636G0314' => 'tar', 'TAR636G3202' => 'tar', 'THA.LOC104800805' => 'tha', 'THA.LOC104801096' => 'tha', 'THA.LOC104801555' => 'tha', 'THA.LOC104808491' => 'tha', 'THA.LOC104808595' => 'tha', 'THA.LOC104815985' => 'tha', 'THA.LOC104822250' => 'tha', 'THA.LOC104826071' => 'tha', 'Thecc.01G265200' => 'tca', 'Thecc.01G265300' => 'tca', 'Thecc.01G265700' => 'tca', 'Thecc.03G109100' => 'tca', 'Thecc.04G245900' => 'tca', 'Thecc.04G246000' => 'tca', 'Thhalv10003334m.g' => 'esa', 'Thhalv10005508m.g' => 'esa', 'Thhalv10005643m.g' => 'esa', 'Thhalv10007316m.g' => 'esa', 'Thhalv10009006m.g' => 'esa', 'Thhalv10009309m.g' => 'esa', 'Thhalv10014917m.g' => 'esa', 'Thhalv10014919m.g' => 'esa', 'Thhalv10015393m.g' => 'esa', 'Thhalv10016515m.g' => 'esa', 'Thhalv10029242m.g' => 'esa', 'TPR.G16654' => 'tpr', 'TPR.G20589' => 'tpr', 'TPR.G23029' => 'tpr', 'TPR.G27731' => 'tpr', 'TPR.G28889' => 'tpr', 'TPR.G28899' => 'tpr', 'TPR.G30846' => 'tpr', 'TPR.G5452' => 'tpr', 'TPR.G5713' => 'tpr', 'TPR.G9046' => 'tpr', 'TPR.G9061' => 'tpr', 'TWI09G1075' => 'twi', 'TWI12G0806' => 'twi', 'TWI18G0108' => 'twi', 'TWI53G1361' => 'twi', 'TWI73G0185' => 'twi', 'TWI73G0427' => 'twi', 'unitig_37.g12001' => 'ugi', 'unitig_747.g21660' => 'ugi', 'unitig_748.g7232' => 'ugi', 'unitig_748.g7315' => 'ugi', 'unitig_85.g27262' => 'ugi', 'unitig_92.g28220' => 'ugi', 'vmacro02632' => 'vma', 'vmacro08410' => 'vma', 'vmacro08411' => 'vma', 'vmacro15407' => 'vma', 'VMungo0251G3619' => 'vmu', 'VMungo0720G1204' => 'vmu', 'VMungo0720G1918' => 'vmu', 'VMungo0720G2387' => 'vmu', 'VMungo0720G2961' => 'vmu', 'VMungo1215G2154' => 'vmu', 'VMungo1383G2411' => 'vmu', 'Zm00001eb051130' => 'zma', 'Zm00001eb116830' => 'zma', 'Zm00001eb116850' => 'zma', 'Zm00001eb151740' => 'zma', 'Zm00001eb292360' => 'zma', 'Zm00001eb301640' => 'zma' ) $gf_id = 'HOM05D000856' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000856' ) $data_identifier = 'HOM05D000856' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 13, 'ath' => (int) 10, 'atr' => (int) 1, 'acertr' => (int) 8, 'cqu' => (int) 6, 'bca' => (int) 21, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 11, 'car' => (int) 9, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 8, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 5, 'fan' => (int) 16, 'fve' => (int) 6, 'gma' => (int) 11, 'ghi' => (int) 19, 'gra' => (int) 9, 'vvi' => (int) 7, 'han' => (int) 17, 'cav' => (int) 5, 'hma' => (int) 2, 'vpl' => (int) 2, 'sun' => (int) 7, 'lal' => (int) 9, 'lja' => (int) 5, 'lonja' => (int) 9, 'lsa' => (int) 5, 'mes' => (int) 8, 'mpo' => (int) 3, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 10, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 15, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 9, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 9, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 6, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 5, 'spa' => (int) 10, 'tar' => (int) 10, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 11, 'tpr' => (int) 11, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 4, 'vmu' => (int) 7, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb301640' $species_info = array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ) $local_species = 'cde' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000856', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p00010' => 'bna', 'A03p04160' => 'bna', 'A03p17160' => 'bna', 'A04p23370' => 'bna', 'A05p14860' => 'bna', 'A08p37020' => 'bna', 'A09p08050' => 'bna', 'A09p66800' => 'bna', 'A09p67940' => 'bna', 'A10p02680' => 'bna', 'A10p05320' => 'bna', 'Aa31LG1G20560' => 'aar', 'Aa31LG1G20610' => 'aar', 'Aa31LG1G7810' => 'aar', 'Aa31LG5G3590' => 'aar', 'Aa31LG5G6140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3819' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4683' => 'aag', 'Actinidia04480' => 'ach', 'Actinidia05466' => 'ach', 'Actinidia08445' => 'ach', 'Actinidia21170' => 'ach', 'Actinidia24812' => 'ach', 'Actinidia24951' => 'ach', 'Actinidia40088' => 'ach', 'Ah.02g111660' => 'amhyb', 'Ah.11g048900' => 'amhyb', 'Ah.11g049910' => 'amhyb', 'AL1G13870' => 'aly', 'AL1G13880' => 'aly', 'AL1G16760' => 'aly', 'AL390U10020' => 'aly', 'AL4G25520' => 'aly', 'AL6G19890' => 'aly', 'AL6G19900' => 'aly', 'AL6G19910' => 'aly', 'AL8G40100' => 'aly', 'Aqoxy2G03562' => 'aox', 'Aqoxy5G00316' => 'aox', 'Aqoxy5G00926' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1628KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1H403S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2FU6SJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.882I6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8YRY2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YN1SN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AF70II' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZA8L1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F916KL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHRD8H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KTZ8QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S22EMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8M29T' => 'arhy', 'AT1G04270' => 'ath', 'AT1G04280' => 'ath', 'AT1G06750' => 'ath', 'AT1G33850' => 'ath', 'AT2G30630' => 'ath', 'AT5G09490' => 'ath', 'AT5G09500' => 'ath', 'AT5G09510' => 'ath', 'AT5G43640' => 'ath', 'AT5G63070' => 'ath', 'ATR0605G315' => 'atr', 'Atru.chr11.175' => 'acertr', 'Atru.chr11.653' => 'acertr', 'Atru.chr3.1616' => 'acertr', 'Atru.chr4.2230' => 'acertr', 'Atru.chr4.2232' => 'acertr', 'Atru.chr5.1598' => 'acertr', 'Atru.chr5.1600' => 'acertr', 'Atru.chr5.2188' => 'acertr', 'AUR62008326' => 'cqu', 'AUR62011922' => 'cqu', 'AUR62011924' => 'cqu', 'AUR62021771' => 'cqu', 'AUR62032237' => 'cqu', 'AUR62032240' => 'cqu', 'BcaB01g05572' => 'bca', 'BcaB02g10337' => 'bca', 'BcaB04g19944' => 'bca', 'BcaB05g21548' => 'bca', 'BcaB05g21549' => 'bca', 'BcaB05g23227' => 'bca', 'BcaB06g26256' => 'bca', 'BcaB06g26257' => 'bca', 'BcaB06g28379' => 'bca', 'BcaC02g11159' => 'bca', 'BcaC03g13258' => 'bca', 'BcaC03g13259' => 'bca', 'BcaC05g24456' => 'bca', 'BcaC05g24457' => 'bca', 'BcaC07g36922' => 'bca', 'BcaC07g36923' => 'bca', 'BcaC07g42050' => 'bca', 'BcaC07g42176' => 'bca', 'BcaC07g42195' => 'bca', 'BcaC07g42196' => 'bca', 'BcaNung06674' => 'bca', 'BolC2t06351H' => 'bol', 'BolC2t06352H' => 'bol', 'BolC3t12993H' => 'bol', 'BolC4t23525H' => 'bol', 'BolC4t27475H' => 'bol', 'BolC5t29025H' => 'bol', 'BolC5t29026H' => 'bol', 'BolC8t46898H' => 'bol', 'BolC8t46899H' => 'bol', 'BolC8t52630H' => 'bol', 'BolC8t52765H' => 'bol', 'BolC9t53824H' => 'bol', 'BraA03t09760Z' => 'bra', 'BraA03t10990Z' => 'bra', 'BraA05t20413Z' => 'bra', 'BraA08t35602Z' => 'bra', 'BraA09t36458Z' => 'bra', 'BraA09t42018Z' => 'bra', 'BraA09t42129Z' => 'bra', 'BraA10t42536Z' => 'bra', 'BraA10t42537Z' => 'bra', 'C01p10690' => 'bna', 'C02p03890' => 'bna', 'C02p03900' => 'bna', 'C03p04620' => 'bna', 'C04p19870' => 'bna', 'C04p59670' => 'bna', 'C05p02460' => 'bna', 'C05p02470' => 'bna', 'C08p00980' => 'bna', 'C08p00990' => 'bna', 'C08p51030' => 'bna', 'C08p52360' => 'bna', 'C09p09120' => 'bna', 'CAN.G19.15' => 'can', 'CAN.G251.10' => 'can', 'CAN.G251.9' => 'can', 'CAN.G398.24' => 'can', 'CAN.G410.32' => 'can', 'CAN.G881.2' => 'can', 'CANSAT01G3025' => 'cansat', 'CANSAT78G1211' => 'cansat', 'CANSAT78G1218' => 'cansat', 'CANSAT78G1521' => 'cansat', 'CANSAT78G1670' => 'cansat', 'CARHR003600' => 'chi', 'CARHR003610' => 'chi', 'CARHR006290' => 'chi', 'CARHR006430' => 'chi', 'CARHR124110' => 'chi', 'CARHR203870' => 'chi', 'CARHR203880' => 'chi', 'CARHR203890' => 'chi', 'CARHR276880' => 'chi', 'Carub.0001s0346' => 'cru', 'Carub.0001s0347' => 'cru', 'Carub.0001s0607' => 'cru', 'Carub.0003s2768' => 'cru', 'Carub.0003s2769' => 'cru', 'Carub.0004s1178' => 'cru', 'Carub.0006s0806' => 'cru', 'Carub.0006s0807' => 'cru', 'Carub.0006s0808' => 'cru', 'Carub.0008s0501' => 'cru', 'Carub.0008s2379' => 'cru', 'Ca_08655_v3' => 'car', 'Ca_08922_v3' => 'car', 'Ca_08923_v3' => 'car', 'Ca_09119_v3' => 'car', 'Ca_09703_v3' => 'car', 'Ca_09705_v3' => 'car', 'Ca_09835_v3' => 'car', 'Ca_26403_v3' => 'car', 'Ca_30719_v3' => 'car', 'CBR_g17958' => 'cbr', 'CBR_g40516' => 'cbr', 'Cc00_g05350' => 'ccan', 'Cc01_g18690' => 'ccan', 'Cc03_g04830' => 'ccan', 'Cc03_g04850' => 'ccan', 'CDE02G4469' => 'cde', 'CDE06G0883' => 'cde', 'CDE06G1295' => 'cde', 'CDE06G1390' => 'cde', 'CDE07G0584' => 'cde', 'CDE07G1084' => 'cde', 'CDE08G1259' => 'cde', 'Cfa002341' => 'cfa', 'Cfa024337' => 'cfa', 'Ciclev10004749m.g' => 'ccl', 'Ciclev10006127m.g' => 'ccl', 'Ciclev10019720m.g' => 'ccl', 'Ciclev10022652m.g' => 'ccl', 'CiPaw.01G190400' => 'cil', 'CiPaw.01G190500' => 'cil', 'CiPaw.02G116400' => 'cil', 'CiPaw.02G116500' => 'cil', 'CiPaw.04G183000' => 'cil', 'CiPaw.04G183300' => 'cil', 'ClCG05G004610' => 'cla', 'ClCG05G004620' => 'cla', 'ClCG06G006730' => 'cla', 'ClCG06G006740' => 'cla', 'ClCG11G003690' => 'cla', 'COL.COLO4_08276' => 'col', 'COL.COLO4_08277' => 'col', 'COL.COLO4_15787' => 'col', 'COL.COLO4_15789' => 'col', 'Cpa.g.c44815' => 'cpa', 'Cpa.g.sc52.144' => 'cpa', 'Cpa.g.sc58.46' => 'cpa', 'Cpa.g.sc58.47' => 'cpa', 'Cre08.g360900' => 'cre', 'CsaV3_2G013030' => 'csa', 'CsaV3_2G013050' => 'csa', 'CsaV3_2G015620' => 'csa', 'CsaV3_3G012590' => 'csa', 'CsaV3_3G012600' => 'csa', 'CSS0001641' => 'camsi', 'CSS0008310' => 'camsi', 'CSS0013011' => 'camsi', 'CSS0017147' => 'camsi', 'CSS0022970' => 'camsi', 'CSS0025655' => 'camsi', 'CSS0028665' => 'camsi', 'CSS0029117' => 'camsi', 'CSS0032024' => 'camsi', 'CSS0039681' => 'camsi', 'CSS0046516' => 'camsi', 'CSS0050307' => 'camsi', 'DCAR_005871' => 'dca', 'DCAR_007342' => 'dca', 'DCAR_024228' => 'dca', 'DCAR_027277' => 'dca', 'DCAR_030718' => 'dca', 'Dinv20287' => 'din', 'Dinv22461' => 'din', 'Dinv22464' => 'din', 'Dinv29912' => 'din', 'Dinv29913' => 'din', 'Dinv34580' => 'din', 'Dinv34582' => 'din', 'Dinv44632' => 'din', 'Duzib052G0266' => 'dzi', 'Duzib133G0907' => 'dzi', 'Duzib133G1034' => 'dzi', 'Duzib138G0207' => 'dzi', 'Duzib138G0491' => 'dzi', 'Duzib151G0812' => 'dzi', 'Duzib151G1166' => 'dzi', 'Duzib168G0192' => 'dzi', 'Duzib211G0077' => 'dzi', 'Duzib212G0429' => 'dzi', 'Duzib212G0472' => 'dzi', 'ECA233G2617' => 'eca', 'ECA236G4188' => 'eca', 'ECA240G0936' => 'eca', 'ECA240G1129' => 'eca', 'ECA247G0623' => 'eca', 'EL10Ac5g10451' => 'bvu', 'EL10Ac5g10453' => 'bvu', 'EL10Ac5g10894' => 'bvu', 'Eucgr.H00192' => 'egr', 'Eucgr.H00193' => 'egr', 'Eucgr.H00194' => 'egr', 'Eucgr.J01562' => 'egr', 'Eucgr.K03301' => 'egr', 'FAN02G0632' => 'fan', 'FAN05G5378' => 'fan', 'FAN09G3247' => 'fan', 'FAN12G0435' => 'fan', 'FAN12G2426' => 'fan', 'FAN14G1707' => 'fan', 'FAN14G4725' => 'fan', 'FAN15G2071' => 'fan', 'FAN17G3065' => 'fan', 'FAN19G1376' => 'fan', 'FAN20G0354' => 'fan', 'FAN20G2429' => 'fan', 'FAN20G2658' => 'fan', 'FAN24G2343' => 'fan', 'FAN27G2362' => 'fan', 'FAN28G1765' => 'fan', 'FvH4_1g16020' => 'fve', 'FvH4_2g04890' => 'fve', 'FvH4_2g22270' => 'fve', 'FvH4_4g02630' => 'fve', 'FvH4_4g02640' => 'fve', 'FvH4_6g02650' => 'fve', 'Glyma.02G140600' => 'gma', 'Glyma.03G159900' => 'gma', 'Glyma.05G234800' => 'gma', 'Glyma.07G269600' => 'gma', 'Glyma.08G042300' => 'gma', 'Glyma.10G033500' => 'gma', 'Glyma.10G185200' => 'gma', 'Glyma.17G004300' => 'gma', 'Glyma.19G161900' => 'gma', 'Glyma.20G205100' => 'gma', 'Glyma.20G205200' => 'gma', 'Gohir.A01G139101' => 'ghi', 'Gohir.A02G035600' => 'ghi', 'Gohir.A02G117901' => 'ghi', 'Gohir.A07G210100' => 'ghi', 'Gohir.A07G210200' => 'ghi', 'Gohir.A08G061100' => 'ghi', 'Gohir.A09G223000' => 'ghi', 'Gohir.A09G223100' => 'ghi', 'Gohir.A10G113900' => 'ghi', 'Gohir.A10G114000' => 'ghi', 'Gohir.D02G042300' => 'ghi', 'Gohir.D07G216100' => 'ghi', 'Gohir.D07G216200' => 'ghi', 'Gohir.D08G070400' => 'ghi', 'Gohir.D09G225000' => 'ghi', 'Gohir.D09G225100' => 'ghi', 'Gohir.D10G152300' => 'ghi', 'Gohir.D10G153200' => 'ghi', 'Gohir.D11G133701' => 'ghi', 'Gorai.004G074100' => 'gra', 'Gorai.005G046800' => 'gra', 'Gorai.006G246500' => 'gra', 'Gorai.006G246600' => 'gra', 'Gorai.007G142900' => 'gra', 'Gorai.011G171000' => 'gra', 'Gorai.011G171100' => 'gra', 'Gorai.013G104300' => 'gra', 'Gorai.013G104400' => 'gra', 'GSVIVG01000754001' => 'vvi', 'GSVIVG01000756001' => 'vvi', 'GSVIVG01010903001' => 'vvi', 'GSVIVG01017623001' => 'vvi', 'GSVIVG01018113001' => 'vvi', 'GSVIVG01018116001' => 'vvi', 'GSVIVG01018118001' => 'vvi', 'HanXRQChr03g0076211' => 'han', 'HanXRQChr03g0092431' => 'han', 'HanXRQChr03g0092441' => 'han', 'HanXRQChr03g0092591' => 'han', 'HanXRQChr03g0092671' => 'han', 'HanXRQChr03g0092681' => 'han', 'HanXRQChr03g0092691' => 'han', 'HanXRQChr03g0092701' => 'han', 'HanXRQChr03g0092721' => 'han', 'HanXRQChr03g0092731' => 'han', 'HanXRQChr04g0113681' => 'han', 'HanXRQChr10g0281371' => 'han', 'HanXRQChr11g0337141' => 'han', 'HanXRQChr13g0424521' => 'han', 'HanXRQChr13g0424531' => 'han', 'HanXRQChr13g0424541' => 'han', 'HanXRQChr16g0498221' => 'han', 'Haze_04377' => 'cav', 'Haze_11298' => 'cav', 'Haze_24547' => 'cav', 'Haze_24550' => 'cav', 'Haze_26587' => 'cav', 'Hma1.2p1_0650F.1_g195410' => 'hma', 'Hma1.2p1_0893F.1_g233470' => 'hma', 'HPP92_006508' => 'vpl', 'HPP92_024780' => 'vpl', 'Hund02688' => 'sun', 'Hund09380' => 'sun', 'Hund09381' => 'sun', 'Hund09832' => 'sun', 'Hund09833' => 'sun', 'Hund11351' => 'sun', 'Hund11513' => 'sun', 'Lalb_Chr06g0162591' => 'lal', 'Lalb_Chr06g0162601' => 'lal', 'Lalb_Chr06g0169321' => 'lal', 'Lalb_Chr09g0330951' => 'lal', 'Lalb_Chr16g0387631' => 'lal', 'Lalb_Chr21g0306241' => 'lal', 'Lalb_Chr25g0290051' => 'lal', 'Lalb_Chr25g0290061' => 'lal', 'Lalb_Chr25g0290071' => 'lal', 'Lj1g0003876' => 'lja', 'Lj1P1207T36' => 'lonja', 'Lj2C1156G12' => 'lonja', 'Lj3A793G39' => 'lonja', 'Lj3C580G2' => 'lonja', 'Lj3C780G2' => 'lonja', 'Lj3C780T4' => 'lonja', 'Lj3C793G9' => 'lonja', 'Lj4g0012960' => 'lja', 'Lj5g0021252' => 'lja', 'Lj5g0021484' => 'lja', 'Lj5g0024528' => 'lja', 'Lj6A399T12' => 'lonja', 'Lj6A656G65' => 'lonja', 'Lsat_1_v5_gn_3_125500' => 'lsa', 'Lsat_1_v5_gn_3_125540' => 'lsa', 'Lsat_1_v5_gn_5_72701' => 'lsa', 'Lsat_1_v5_gn_8_91560' => 'lsa', 'Lsat_1_v5_gn_9_9640' => 'lsa', 'Manes.01G200600' => 'mes', 'Manes.01G200700' => 'mes', 'Manes.03G168900' => 'mes', 'Manes.03G169000' => 'mes', 'Manes.05G085801' => 'mes', 'Manes.05G086200' => 'mes', 'Manes.15G036700' => 'mes', 'Manes.15G036900' => 'mes', 'Mapoly0004s0172' => 'mpo', 'Mapoly0023s0001' => 'mpo', 'Mapoly0142s0012' => 'mpo', 'MBI01_g32854_MAGBIO' => 'mbi', 'MBI11_g24427_MAGBIO' => 'mbi', 'MBI11_g47319_MAGBIO' => 'mbi', 'MCO01G433' => 'mco', 'MD00G1187800' => 'mdo', 'MD04G1226500' => 'mdo', 'MD05G1203900' => 'mdo', 'MD10G1191100' => 'mdo', 'MD12G1243500' => 'mdo', 'MD13G1207000' => 'mdo', 'MD13G1207100' => 'mdo', 'MD16G1208600' => 'mdo', 'Medtr1g050352' => 'mtr', 'Medtr1g070385' => 'mtr', 'Medtr1g070450' => 'mtr', 'Medtr1g075200' => 'mtr', 'Medtr1g075250' => 'mtr', 'Medtr1g075260' => 'mtr', 'Medtr1g475250' => 'mtr', 'Medtr4g075450' => 'mtr', 'Medtr7g096300' => 'mtr', 'Medtr8g105110' => 'mtr', 'MELO3C006470.2' => 'cme', 'MELO3C006471.2' => 'cme', 'MELO3C020772.2' => 'cme', 'MELO3C026780.2' => 'cme', 'MELO3C026781.2' => 'cme', 'Migut.D00390' => 'egut', 'Migut.G00435' => 'egut', 'Migut.G00436' => 'egut', 'Migut.G00718' => 'egut', 'MSTRG.21891' => 'ama', 'MSTRG.26910' => 'ama', 'MSTRG.4099' => 'ama', 'MSTRG.9925' => 'ama', 'Nitab4.5_0000165g0010' => 'nta', 'Nitab4.5_0000209g0180' => 'nta', 'Nitab4.5_0000244g0440' => 'nta', 'Nitab4.5_0000525g0220' => 'nta', 'Nitab4.5_0001597g0020' => 'nta', 'Nitab4.5_0001878g0040' => 'nta', 'Nitab4.5_0001878g0060' => 'nta', 'Nitab4.5_0002838g0100' => 'nta', 'Nitab4.5_0002838g0120' => 'nta', 'Nitab4.5_0004798g0030' => 'nta', 'Nitab4.5_0005420g0010' => 'nta', 'Nitab4.5_0005507g0010' => 'nta', 'Nitab4.5_0005574g0020' => 'nta', 'Nitab4.5_0005838g0010' => 'nta', 'Nitab4.5_0010580g0020' => 'nta', 'Nn1g02599' => 'nnu', 'Nn1g02608' => 'nnu', 'Nn3g17742' => 'nnu', 'Nn3g19534' => 'nnu', 'Nn3g19535' => 'nnu', 'Oeu008790.1' => 'oeu', 'Oeu008792.1' => 'oeu', 'Oeu032590.1' => 'oeu', 'Oeu035349.1' => 'oeu', 'Oeu049791.1' => 'oeu', 'Os01g0774500' => 'osa', 'Os03g0628800' => 'osa', 'Os03g0798600' => 'osa', 'Os05g0508800' => 'osa', 'Peaxi162Scf00036g02018' => 'pax', 'Peaxi162Scf00578g00032' => 'pax', 'Peaxi162Scf00578g00317' => 'pax', 'Peaxi162Scf00785g00114' => 'pax', 'Peaxi162Scf00813g00119' => 'pax', 'Peaxi162Scf00906g00227' => 'pax', 'PGR004G0875' => 'pgr', 'PGR004G2424' => 'pgr', 'PGR031G1239' => 'pgr', 'PGR031G2474' => 'pgr', 'PGR044G0423' => 'pgr', 'PGSC0003DMG400001128' => 'stu', 'PGSC0003DMG400007336' => 'stu', 'PGSC0003DMG400016318' => 'stu', 'PGSC0003DMG400016319' => 'stu', 'PGSC0003DMG400018074' => 'stu', 'Phvul.001G157700' => 'pvu', 'Phvul.002G148550' => 'pvu', 'Phvul.002G320200' => 'pvu', 'Phvul.003G089200' => 'pvu', 'Phvul.007G126000' => 'pvu', 'Phvul.007G126100' => 'pvu', 'Phvul.007G178000' => 'pvu', 'Phvul.007G178200' => 'pvu', 'Potri.002G043000' => 'ptr', 'Potri.002G043200' => 'ptr', 'Potri.003G123750' => 'ptr', 'Potri.005G055401' => 'ptr', 'Potri.005G219700' => 'ptr', 'Potri.005G220000' => 'ptr', 'Potri.008G161901' => 'ptr', 'Potri.008G162000' => 'ptr', 'Potri.008G162400' => 'ptr', 'Potri.010G076900' => 'ptr', 'Pp3c12_9180' => 'ppa', 'Pp3c13_19770' => 'ppa', 'Pp3c14_22950' => 'ppa', 'Pp3c16_12160' => 'ppa', 'Pp3c27_7820' => 'ppa', 'Pp3c2_3490' => 'ppa', 'Pp3c3_23700' => 'ppa', 'Pp3c3_36520' => 'ppa', 'Pp3c4_15250' => 'ppa', 'PRCOL_00007002' => 'pco', 'Prupe.1G030600' => 'ppe', 'Prupe.1G030700' => 'ppe', 'Prupe.6G345200' => 'ppe', 'Prupe.8G230300' => 'ppe', 'Prupe.8G230500' => 'ppe', 'Psat3g059600' => 'psa', 'Psat5g200920' => 'psa', 'Psat6g056440' => 'psa', 'Psat6g057360' => 'psa', 'Psat6g134120' => 'psa', 'Psat6g134160' => 'psa', 'Psat7g008640' => 'psa', 'Psat7g185240' => 'psa', 'PSO017G1330' => 'pso', 'PSO063G6097' => 'pso', 'PSO170G0835' => 'pso', 'PSO170G2499' => 'pso', 'PSO210G5058' => 'pso', 'PSO210G6154' => 'pso', 'PSO585G0031' => 'pso', 'PSO832G0264' => 'pso', 'PSO832G4288' => 'pso', 'QL03p027355' => 'qlo', 'QL03p027430' => 'qlo', 'QL04p081380' => 'qlo', 'QL06p015642' => 'qlo', 'QL06p015650' => 'qlo', 'QL06p015686' => 'qlo', 'QL12p042927' => 'qlo', 'QL93p1863_0035' => 'qlo', 'RcHm_v2.0_Chr3g0450581' => 'rch', 'RcHm_v2.0_Chr4g0390371' => 'rch', 'RcHm_v2.0_Chr4g0390381' => 'rch', 'RcHm_v2.0_Chr4g0390491' => 'rch', 'RcHm_v2.0_Chr4g0390501' => 'rch', 'RcHm_v2.0_Chr6g0289231' => 'rch', 'Rhsim04G0190400' => 'rsi', 'Rhsim04G0190500' => 'rsi', 'Rhsim04G0190600' => 'rsi', 'Rhsim13G0031400' => 'rsi', 'Rhsim13G0165600' => 'rsi', 'RhsimUnG0114600' => 'rsi', 'RhsimUnG0114700' => 'rsi', 'Sabra02G0034800' => 'sbr', 'Sabra02G0035100' => 'sbr', 'Sabra05G0168600' => 'sbr', 'Sabra05G0168800' => 'sbr', 'Sabra08G0123700' => 'sbr', 'Sabra10G0031900' => 'sbr', 'Sabra13G0039000' => 'sbr', 'SalBow2G0782' => 'sbo', 'SalBow2G1403' => 'sbo', 'SalBow4G0074' => 'sbo', 'SalBow4G2635' => 'sbo', 'SalBow5G3010' => 'sbo', 'Sc05g0000870' => 'sci', 'Sc05g0000890' => 'sci', 'Sc13g0005000' => 'sci', 'Sc13g0005030' => 'sci', 'Sc19g0003790' => 'sci', 'Sc19g0003800' => 'sci', 'Sed0003467' => 'sed', 'Sed0009355' => 'sed', 'Sed0009894' => 'sed', 'Sed0011972' => 'sed', 'Sed0021483' => 'sed', 'Sed0021750' => 'sed', 'Sed0026279' => 'sed', 'SEGI_05312' => 'sgi', 'SEGI_10112' => 'sgi', 'SEGI_15835' => 'sgi', 'SEGI_30386' => 'sgi', 'SEGI_34122' => 'sgi', 'SEGI_35063' => 'sgi', 'SGA_v2.0_scaffold101G29794' => 'sas', 'SGA_v2.0_scaffold1G00573' => 'sas', 'SGA_v2.0_scaffold79G25637' => 'sas', 'SGA_v2.0_scaffold88G27283' => 'sas', 'SGA_v2.0_scaffold88G27285' => 'sas', 'SGA_v2.0_scaffold88G27331' => 'sas', 'SHI09937' => 'shi', 'SMO119G0302' => 'smo', 'SMO137G0231' => 'smo', 'SMO367G1151' => 'smo', 'Solyc02g082000.3' => 'sly', 'Solyc06g031670.3' => 'sly', 'Solyc06g053810.3' => 'sly', 'Solyc07g025457.1' => 'sly', 'Solyc08g059740.1' => 'sly', 'Solyc08g059750.3' => 'sly', 'Solyc09g083370.3' => 'sly', 'Solyc12g038950.3' => 'sly', 'Sopen02g026630' => 'spe', 'Sopen06g018930' => 'spe', 'Sopen06g018940' => 'spe', 'Sopen08g009460' => 'spe', 'Sopen09g032290' => 'spe', 'Sp1g03080' => 'spa', 'Sp1g03090' => 'spa', 'Sp1g05480' => 'spa', 'Sp2g07860' => 'spa', 'Sp2g08430' => 'spa', 'Sp2g08440' => 'spa', 'Sp2g26200' => 'spa', 'Sp4g13170' => 'spa', 'Sp6g33840' => 'spa', 'SpUn1204_0010' => 'spa', 'TAR365G0908' => 'tar', 'TAR381G1270' => 'tar', 'TAR381G1651' => 'tar', 'TAR625G1131' => 'tar', 'TAR633G0962' => 'tar', 'TAR633G1729' => 'tar', 'TAR633G1864' => 'tar', 'TAR636G0221' => 'tar', 'TAR636G0314' => 'tar', 'TAR636G3202' => 'tar', 'THA.LOC104800805' => 'tha', 'THA.LOC104801096' => 'tha', 'THA.LOC104801555' => 'tha', 'THA.LOC104808491' => 'tha', 'THA.LOC104808595' => 'tha', 'THA.LOC104815985' => 'tha', 'THA.LOC104822250' => 'tha', 'THA.LOC104826071' => 'tha', 'Thecc.01G265200' => 'tca', 'Thecc.01G265300' => 'tca', 'Thecc.01G265700' => 'tca', 'Thecc.03G109100' => 'tca', 'Thecc.04G245900' => 'tca', 'Thecc.04G246000' => 'tca', 'Thhalv10003334m.g' => 'esa', 'Thhalv10005508m.g' => 'esa', 'Thhalv10005643m.g' => 'esa', 'Thhalv10007316m.g' => 'esa', 'Thhalv10009006m.g' => 'esa', 'Thhalv10009309m.g' => 'esa', 'Thhalv10014917m.g' => 'esa', 'Thhalv10014919m.g' => 'esa', 'Thhalv10015393m.g' => 'esa', 'Thhalv10016515m.g' => 'esa', 'Thhalv10029242m.g' => 'esa', 'TPR.G16654' => 'tpr', 'TPR.G20589' => 'tpr', 'TPR.G23029' => 'tpr', 'TPR.G27731' => 'tpr', 'TPR.G28889' => 'tpr', 'TPR.G28899' => 'tpr', 'TPR.G30846' => 'tpr', 'TPR.G5452' => 'tpr', 'TPR.G5713' => 'tpr', 'TPR.G9046' => 'tpr', 'TPR.G9061' => 'tpr', 'TWI09G1075' => 'twi', 'TWI12G0806' => 'twi', 'TWI18G0108' => 'twi', 'TWI53G1361' => 'twi', 'TWI73G0185' => 'twi', 'TWI73G0427' => 'twi', 'unitig_37.g12001' => 'ugi', 'unitig_747.g21660' => 'ugi', 'unitig_748.g7232' => 'ugi', 'unitig_748.g7315' => 'ugi', 'unitig_85.g27262' => 'ugi', 'unitig_92.g28220' => 'ugi', 'vmacro02632' => 'vma', 'vmacro08410' => 'vma', 'vmacro08411' => 'vma', 'vmacro15407' => 'vma', 'VMungo0251G3619' => 'vmu', 'VMungo0720G1204' => 'vmu', 'VMungo0720G1918' => 'vmu', 'VMungo0720G2387' => 'vmu', 'VMungo0720G2961' => 'vmu', 'VMungo1215G2154' => 'vmu', 'VMungo1383G2411' => 'vmu', 'Zm00001eb051130' => 'zma', 'Zm00001eb116830' => 'zma', 'Zm00001eb116850' => 'zma', 'Zm00001eb151740' => 'zma', 'Zm00001eb292360' => 'zma', 'Zm00001eb301640' => 'zma' ), 'gf_id' => 'HOM05D000856', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000856' ), 'data_identifier' => 'HOM05D000856', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000856', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p00010' => 'bna', 'A03p04160' => 'bna', 'A03p17160' => 'bna', 'A04p23370' => 'bna', 'A05p14860' => 'bna', 'A08p37020' => 'bna', 'A09p08050' => 'bna', 'A09p66800' => 'bna', 'A09p67940' => 'bna', 'A10p02680' => 'bna', 'A10p05320' => 'bna', 'Aa31LG1G20560' => 'aar', 'Aa31LG1G20610' => 'aar', 'Aa31LG1G7810' => 'aar', 'Aa31LG5G3590' => 'aar', 'Aa31LG5G6140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3819' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4683' => 'aag', 'Actinidia04480' => 'ach', 'Actinidia05466' => 'ach', 'Actinidia08445' => 'ach', 'Actinidia21170' => 'ach', 'Actinidia24812' => 'ach', 'Actinidia24951' => 'ach', 'Actinidia40088' => 'ach', 'Ah.02g111660' => 'amhyb', 'Ah.11g048900' => 'amhyb', 'Ah.11g049910' => 'amhyb', 'AL1G13870' => 'aly', 'AL1G13880' => 'aly', 'AL1G16760' => 'aly', 'AL390U10020' => 'aly', 'AL4G25520' => 'aly', 'AL6G19890' => 'aly', 'AL6G19900' => 'aly', 'AL6G19910' => 'aly', 'AL8G40100' => 'aly', 'Aqoxy2G03562' => 'aox', 'Aqoxy5G00316' => 'aox', 'Aqoxy5G00926' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1628KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1H403S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2FU6SJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.882I6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8YRY2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YN1SN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AF70II' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZA8L1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F916KL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHRD8H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KTZ8QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S22EMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8M29T' => 'arhy', 'AT1G04270' => 'ath', 'AT1G04280' => 'ath', 'AT1G06750' => 'ath', 'AT1G33850' => 'ath', 'AT2G30630' => 'ath', 'AT5G09490' => 'ath', 'AT5G09500' => 'ath', 'AT5G09510' => 'ath', 'AT5G43640' => 'ath', 'AT5G63070' => 'ath', 'ATR0605G315' => 'atr', 'Atru.chr11.175' => 'acertr', 'Atru.chr11.653' => 'acertr', 'Atru.chr3.1616' => 'acertr', 'Atru.chr4.2230' => 'acertr', 'Atru.chr4.2232' => 'acertr', 'Atru.chr5.1598' => 'acertr', 'Atru.chr5.1600' => 'acertr', 'Atru.chr5.2188' => 'acertr', 'AUR62008326' => 'cqu', 'AUR62011922' => 'cqu', 'AUR62011924' => 'cqu', 'AUR62021771' => 'cqu', 'AUR62032237' => 'cqu', 'AUR62032240' => 'cqu', 'BcaB01g05572' => 'bca', 'BcaB02g10337' => 'bca', 'BcaB04g19944' => 'bca', 'BcaB05g21548' => 'bca', 'BcaB05g21549' => 'bca', 'BcaB05g23227' => 'bca', 'BcaB06g26256' => 'bca', 'BcaB06g26257' => 'bca', 'BcaB06g28379' => 'bca', 'BcaC02g11159' => 'bca', 'BcaC03g13258' => 'bca', 'BcaC03g13259' => 'bca', 'BcaC05g24456' => 'bca', 'BcaC05g24457' => 'bca', 'BcaC07g36922' => 'bca', 'BcaC07g36923' => 'bca', 'BcaC07g42050' => 'bca', 'BcaC07g42176' => 'bca', 'BcaC07g42195' => 'bca', 'BcaC07g42196' => 'bca', 'BcaNung06674' => 'bca', 'BolC2t06351H' => 'bol', 'BolC2t06352H' => 'bol', 'BolC3t12993H' => 'bol', 'BolC4t23525H' => 'bol', 'BolC4t27475H' => 'bol', 'BolC5t29025H' => 'bol', 'BolC5t29026H' => 'bol', 'BolC8t46898H' => 'bol', 'BolC8t46899H' => 'bol', 'BolC8t52630H' => 'bol', 'BolC8t52765H' => 'bol', 'BolC9t53824H' => 'bol', 'BraA03t09760Z' => 'bra', 'BraA03t10990Z' => 'bra', 'BraA05t20413Z' => 'bra', 'BraA08t35602Z' => 'bra', 'BraA09t36458Z' => 'bra', 'BraA09t42018Z' => 'bra', 'BraA09t42129Z' => 'bra', 'BraA10t42536Z' => 'bra', 'BraA10t42537Z' => 'bra', 'C01p10690' => 'bna', 'C02p03890' => 'bna', 'C02p03900' => 'bna', 'C03p04620' => 'bna', 'C04p19870' => 'bna', 'C04p59670' => 'bna', 'C05p02460' => 'bna', 'C05p02470' => 'bna', 'C08p00980' => 'bna', 'C08p00990' => 'bna', 'C08p51030' => 'bna', 'C08p52360' => 'bna', 'C09p09120' => 'bna', 'CAN.G19.15' => 'can', 'CAN.G251.10' => 'can', 'CAN.G251.9' => 'can', 'CAN.G398.24' => 'can', 'CAN.G410.32' => 'can', 'CAN.G881.2' => 'can', 'CANSAT01G3025' => 'cansat', 'CANSAT78G1211' => 'cansat', 'CANSAT78G1218' => 'cansat', 'CANSAT78G1521' => 'cansat', 'CANSAT78G1670' => 'cansat', 'CARHR003600' => 'chi', 'CARHR003610' => 'chi', 'CARHR006290' => 'chi', 'CARHR006430' => 'chi', 'CARHR124110' => 'chi', 'CARHR203870' => 'chi', 'CARHR203880' => 'chi', 'CARHR203890' => 'chi', 'CARHR276880' => 'chi', 'Carub.0001s0346' => 'cru', 'Carub.0001s0347' => 'cru', 'Carub.0001s0607' => 'cru', 'Carub.0003s2768' => 'cru', 'Carub.0003s2769' => 'cru', 'Carub.0004s1178' => 'cru', 'Carub.0006s0806' => 'cru', 'Carub.0006s0807' => 'cru', 'Carub.0006s0808' => 'cru', 'Carub.0008s0501' => 'cru', 'Carub.0008s2379' => 'cru', 'Ca_08655_v3' => 'car', 'Ca_08922_v3' => 'car', 'Ca_08923_v3' => 'car', 'Ca_09119_v3' => 'car', 'Ca_09703_v3' => 'car', 'Ca_09705_v3' => 'car', 'Ca_09835_v3' => 'car', 'Ca_26403_v3' => 'car', 'Ca_30719_v3' => 'car', 'CBR_g17958' => 'cbr', 'CBR_g40516' => 'cbr', 'Cc00_g05350' => 'ccan', 'Cc01_g18690' => 'ccan', 'Cc03_g04830' => 'ccan', 'Cc03_g04850' => 'ccan', 'CDE02G4469' => 'cde', 'CDE06G0883' => 'cde', 'CDE06G1295' => 'cde', 'CDE06G1390' => 'cde', 'CDE07G0584' => 'cde', 'CDE07G1084' => 'cde', 'CDE08G1259' => 'cde', 'Cfa002341' => 'cfa', 'Cfa024337' => 'cfa', 'Ciclev10004749m.g' => 'ccl', 'Ciclev10006127m.g' => 'ccl', 'Ciclev10019720m.g' => 'ccl', 'Ciclev10022652m.g' => 'ccl', 'CiPaw.01G190400' => 'cil', 'CiPaw.01G190500' => 'cil', 'CiPaw.02G116400' => 'cil', 'CiPaw.02G116500' => 'cil', 'CiPaw.04G183000' => 'cil', 'CiPaw.04G183300' => 'cil', 'ClCG05G004610' => 'cla', 'ClCG05G004620' => 'cla', 'ClCG06G006730' => 'cla', 'ClCG06G006740' => 'cla', 'ClCG11G003690' => 'cla', 'COL.COLO4_08276' => 'col', 'COL.COLO4_08277' => 'col', 'COL.COLO4_15787' => 'col', 'COL.COLO4_15789' => 'col', 'Cpa.g.c44815' => 'cpa', 'Cpa.g.sc52.144' => 'cpa', 'Cpa.g.sc58.46' => 'cpa', 'Cpa.g.sc58.47' => 'cpa', 'Cre08.g360900' => 'cre', 'CsaV3_2G013030' => 'csa', 'CsaV3_2G013050' => 'csa', 'CsaV3_2G015620' => 'csa', 'CsaV3_3G012590' => 'csa', 'CsaV3_3G012600' => 'csa', 'CSS0001641' => 'camsi', 'CSS0008310' => 'camsi', 'CSS0013011' => 'camsi', 'CSS0017147' => 'camsi', 'CSS0022970' => 'camsi', 'CSS0025655' => 'camsi', 'CSS0028665' => 'camsi', 'CSS0029117' => 'camsi', 'CSS0032024' => 'camsi', 'CSS0039681' => 'camsi', 'CSS0046516' => 'camsi', 'CSS0050307' => 'camsi', 'DCAR_005871' => 'dca', 'DCAR_007342' => 'dca', 'DCAR_024228' => 'dca', 'DCAR_027277' => 'dca', 'DCAR_030718' => 'dca', 'Dinv20287' => 'din', 'Dinv22461' => 'din', 'Dinv22464' => 'din', 'Dinv29912' => 'din', 'Dinv29913' => 'din', 'Dinv34580' => 'din', 'Dinv34582' => 'din', 'Dinv44632' => 'din', 'Duzib052G0266' => 'dzi', 'Duzib133G0907' => 'dzi', 'Duzib133G1034' => 'dzi', 'Duzib138G0207' => 'dzi', 'Duzib138G0491' => 'dzi', 'Duzib151G0812' => 'dzi', 'Duzib151G1166' => 'dzi', 'Duzib168G0192' => 'dzi', 'Duzib211G0077' => 'dzi', 'Duzib212G0429' => 'dzi', 'Duzib212G0472' => 'dzi', 'ECA233G2617' => 'eca', 'ECA236G4188' => 'eca', 'ECA240G0936' => 'eca', 'ECA240G1129' => 'eca', 'ECA247G0623' => 'eca', 'EL10Ac5g10451' => 'bvu', 'EL10Ac5g10453' => 'bvu', 'EL10Ac5g10894' => 'bvu', 'Eucgr.H00192' => 'egr', 'Eucgr.H00193' => 'egr', 'Eucgr.H00194' => 'egr', 'Eucgr.J01562' => 'egr', 'Eucgr.K03301' => 'egr', 'FAN02G0632' => 'fan', 'FAN05G5378' => 'fan', 'FAN09G3247' => 'fan', 'FAN12G0435' => 'fan', 'FAN12G2426' => 'fan', 'FAN14G1707' => 'fan', 'FAN14G4725' => 'fan', 'FAN15G2071' => 'fan', 'FAN17G3065' => 'fan', 'FAN19G1376' => 'fan', 'FAN20G0354' => 'fan', 'FAN20G2429' => 'fan', 'FAN20G2658' => 'fan', 'FAN24G2343' => 'fan', 'FAN27G2362' => 'fan', 'FAN28G1765' => 'fan', 'FvH4_1g16020' => 'fve', 'FvH4_2g04890' => 'fve', 'FvH4_2g22270' => 'fve', 'FvH4_4g02630' => 'fve', 'FvH4_4g02640' => 'fve', 'FvH4_6g02650' => 'fve', 'Glyma.02G140600' => 'gma', 'Glyma.03G159900' => 'gma', 'Glyma.05G234800' => 'gma', 'Glyma.07G269600' => 'gma', 'Glyma.08G042300' => 'gma', 'Glyma.10G033500' => 'gma', 'Glyma.10G185200' => 'gma', 'Glyma.17G004300' => 'gma', 'Glyma.19G161900' => 'gma', 'Glyma.20G205100' => 'gma', 'Glyma.20G205200' => 'gma', 'Gohir.A01G139101' => 'ghi', 'Gohir.A02G035600' => 'ghi', 'Gohir.A02G117901' => 'ghi', 'Gohir.A07G210100' => 'ghi', 'Gohir.A07G210200' => 'ghi', 'Gohir.A08G061100' => 'ghi', 'Gohir.A09G223000' => 'ghi', 'Gohir.A09G223100' => 'ghi', 'Gohir.A10G113900' => 'ghi', 'Gohir.A10G114000' => 'ghi', 'Gohir.D02G042300' => 'ghi', 'Gohir.D07G216100' => 'ghi', 'Gohir.D07G216200' => 'ghi', 'Gohir.D08G070400' => 'ghi', 'Gohir.D09G225000' => 'ghi', 'Gohir.D09G225100' => 'ghi', 'Gohir.D10G152300' => 'ghi', 'Gohir.D10G153200' => 'ghi', 'Gohir.D11G133701' => 'ghi', 'Gorai.004G074100' => 'gra', 'Gorai.005G046800' => 'gra', 'Gorai.006G246500' => 'gra', 'Gorai.006G246600' => 'gra', 'Gorai.007G142900' => 'gra', 'Gorai.011G171000' => 'gra', 'Gorai.011G171100' => 'gra', 'Gorai.013G104300' => 'gra', 'Gorai.013G104400' => 'gra', 'GSVIVG01000754001' => 'vvi', 'GSVIVG01000756001' => 'vvi', 'GSVIVG01010903001' => 'vvi', 'GSVIVG01017623001' => 'vvi', 'GSVIVG01018113001' => 'vvi', 'GSVIVG01018116001' => 'vvi', 'GSVIVG01018118001' => 'vvi', 'HanXRQChr03g0076211' => 'han', 'HanXRQChr03g0092431' => 'han', 'HanXRQChr03g0092441' => 'han', 'HanXRQChr03g0092591' => 'han', 'HanXRQChr03g0092671' => 'han', 'HanXRQChr03g0092681' => 'han', 'HanXRQChr03g0092691' => 'han', 'HanXRQChr03g0092701' => 'han', 'HanXRQChr03g0092721' => 'han', 'HanXRQChr03g0092731' => 'han', 'HanXRQChr04g0113681' => 'han', 'HanXRQChr10g0281371' => 'han', 'HanXRQChr11g0337141' => 'han', 'HanXRQChr13g0424521' => 'han', 'HanXRQChr13g0424531' => 'han', 'HanXRQChr13g0424541' => 'han', 'HanXRQChr16g0498221' => 'han', 'Haze_04377' => 'cav', 'Haze_11298' => 'cav', 'Haze_24547' => 'cav', 'Haze_24550' => 'cav', 'Haze_26587' => 'cav', 'Hma1.2p1_0650F.1_g195410' => 'hma', 'Hma1.2p1_0893F.1_g233470' => 'hma', 'HPP92_006508' => 'vpl', 'HPP92_024780' => 'vpl', 'Hund02688' => 'sun', 'Hund09380' => 'sun', 'Hund09381' => 'sun', 'Hund09832' => 'sun', 'Hund09833' => 'sun', 'Hund11351' => 'sun', 'Hund11513' => 'sun', 'Lalb_Chr06g0162591' => 'lal', 'Lalb_Chr06g0162601' => 'lal', 'Lalb_Chr06g0169321' => 'lal', 'Lalb_Chr09g0330951' => 'lal', 'Lalb_Chr16g0387631' => 'lal', 'Lalb_Chr21g0306241' => 'lal', 'Lalb_Chr25g0290051' => 'lal', 'Lalb_Chr25g0290061' => 'lal', 'Lalb_Chr25g0290071' => 'lal', 'Lj1g0003876' => 'lja', 'Lj1P1207T36' => 'lonja', 'Lj2C1156G12' => 'lonja', 'Lj3A793G39' => 'lonja', 'Lj3C580G2' => 'lonja', 'Lj3C780G2' => 'lonja', 'Lj3C780T4' => 'lonja', 'Lj3C793G9' => 'lonja', 'Lj4g0012960' => 'lja', 'Lj5g0021252' => 'lja', 'Lj5g0021484' => 'lja', 'Lj5g0024528' => 'lja', 'Lj6A399T12' => 'lonja', 'Lj6A656G65' => 'lonja', 'Lsat_1_v5_gn_3_125500' => 'lsa', 'Lsat_1_v5_gn_3_125540' => 'lsa', 'Lsat_1_v5_gn_5_72701' => 'lsa', 'Lsat_1_v5_gn_8_91560' => 'lsa', 'Lsat_1_v5_gn_9_9640' => 'lsa', 'Manes.01G200600' => 'mes', 'Manes.01G200700' => 'mes', 'Manes.03G168900' => 'mes', 'Manes.03G169000' => 'mes', 'Manes.05G085801' => 'mes', 'Manes.05G086200' => 'mes', 'Manes.15G036700' => 'mes', 'Manes.15G036900' => 'mes', 'Mapoly0004s0172' => 'mpo', 'Mapoly0023s0001' => 'mpo', 'Mapoly0142s0012' => 'mpo', 'MBI01_g32854_MAGBIO' => 'mbi', 'MBI11_g24427_MAGBIO' => 'mbi', 'MBI11_g47319_MAGBIO' => 'mbi', 'MCO01G433' => 'mco', 'MD00G1187800' => 'mdo', 'MD04G1226500' => 'mdo', 'MD05G1203900' => 'mdo', 'MD10G1191100' => 'mdo', 'MD12G1243500' => 'mdo', 'MD13G1207000' => 'mdo', 'MD13G1207100' => 'mdo', 'MD16G1208600' => 'mdo', 'Medtr1g050352' => 'mtr', 'Medtr1g070385' => 'mtr', 'Medtr1g070450' => 'mtr', 'Medtr1g075200' => 'mtr', 'Medtr1g075250' => 'mtr', 'Medtr1g075260' => 'mtr', 'Medtr1g475250' => 'mtr', 'Medtr4g075450' => 'mtr', 'Medtr7g096300' => 'mtr', 'Medtr8g105110' => 'mtr', 'MELO3C006470.2' => 'cme', 'MELO3C006471.2' => 'cme', 'MELO3C020772.2' => 'cme', 'MELO3C026780.2' => 'cme', 'MELO3C026781.2' => 'cme', 'Migut.D00390' => 'egut', 'Migut.G00435' => 'egut', 'Migut.G00436' => 'egut', 'Migut.G00718' => 'egut', 'MSTRG.21891' => 'ama', 'MSTRG.26910' => 'ama', 'MSTRG.4099' => 'ama', 'MSTRG.9925' => 'ama', 'Nitab4.5_0000165g0010' => 'nta', 'Nitab4.5_0000209g0180' => 'nta', 'Nitab4.5_0000244g0440' => 'nta', 'Nitab4.5_0000525g0220' => 'nta', 'Nitab4.5_0001597g0020' => 'nta', 'Nitab4.5_0001878g0040' => 'nta', 'Nitab4.5_0001878g0060' => 'nta', 'Nitab4.5_0002838g0100' => 'nta', 'Nitab4.5_0002838g0120' => 'nta', 'Nitab4.5_0004798g0030' => 'nta', 'Nitab4.5_0005420g0010' => 'nta', 'Nitab4.5_0005507g0010' => 'nta', 'Nitab4.5_0005574g0020' => 'nta', 'Nitab4.5_0005838g0010' => 'nta', 'Nitab4.5_0010580g0020' => 'nta', 'Nn1g02599' => 'nnu', 'Nn1g02608' => 'nnu', 'Nn3g17742' => 'nnu', 'Nn3g19534' => 'nnu', 'Nn3g19535' => 'nnu', 'Oeu008790.1' => 'oeu', 'Oeu008792.1' => 'oeu', 'Oeu032590.1' => 'oeu', 'Oeu035349.1' => 'oeu', 'Oeu049791.1' => 'oeu', 'Os01g0774500' => 'osa', 'Os03g0628800' => 'osa', 'Os03g0798600' => 'osa', 'Os05g0508800' => 'osa', 'Peaxi162Scf00036g02018' => 'pax', 'Peaxi162Scf00578g00032' => 'pax', 'Peaxi162Scf00578g00317' => 'pax', 'Peaxi162Scf00785g00114' => 'pax', 'Peaxi162Scf00813g00119' => 'pax', 'Peaxi162Scf00906g00227' => 'pax', 'PGR004G0875' => 'pgr', 'PGR004G2424' => 'pgr', 'PGR031G1239' => 'pgr', 'PGR031G2474' => 'pgr', 'PGR044G0423' => 'pgr', 'PGSC0003DMG400001128' => 'stu', 'PGSC0003DMG400007336' => 'stu', 'PGSC0003DMG400016318' => 'stu', 'PGSC0003DMG400016319' => 'stu', 'PGSC0003DMG400018074' => 'stu', 'Phvul.001G157700' => 'pvu', 'Phvul.002G148550' => 'pvu', 'Phvul.002G320200' => 'pvu', 'Phvul.003G089200' => 'pvu', 'Phvul.007G126000' => 'pvu', 'Phvul.007G126100' => 'pvu', 'Phvul.007G178000' => 'pvu', 'Phvul.007G178200' => 'pvu', 'Potri.002G043000' => 'ptr', 'Potri.002G043200' => 'ptr', 'Potri.003G123750' => 'ptr', 'Potri.005G055401' => 'ptr', 'Potri.005G219700' => 'ptr', 'Potri.005G220000' => 'ptr', 'Potri.008G161901' => 'ptr', 'Potri.008G162000' => 'ptr', 'Potri.008G162400' => 'ptr', 'Potri.010G076900' => 'ptr', 'Pp3c12_9180' => 'ppa', 'Pp3c13_19770' => 'ppa', 'Pp3c14_22950' => 'ppa', 'Pp3c16_12160' => 'ppa', 'Pp3c27_7820' => 'ppa', 'Pp3c2_3490' => 'ppa', 'Pp3c3_23700' => 'ppa', 'Pp3c3_36520' => 'ppa', 'Pp3c4_15250' => 'ppa', 'PRCOL_00007002' => 'pco', 'Prupe.1G030600' => 'ppe', 'Prupe.1G030700' => 'ppe', 'Prupe.6G345200' => 'ppe', 'Prupe.8G230300' => 'ppe', 'Prupe.8G230500' => 'ppe', 'Psat3g059600' => 'psa', 'Psat5g200920' => 'psa', 'Psat6g056440' => 'psa', 'Psat6g057360' => 'psa', 'Psat6g134120' => 'psa', 'Psat6g134160' => 'psa', 'Psat7g008640' => 'psa', 'Psat7g185240' => 'psa', 'PSO017G1330' => 'pso', 'PSO063G6097' => 'pso', 'PSO170G0835' => 'pso', 'PSO170G2499' => 'pso', 'PSO210G5058' => 'pso', 'PSO210G6154' => 'pso', 'PSO585G0031' => 'pso', 'PSO832G0264' => 'pso', 'PSO832G4288' => 'pso', 'QL03p027355' => 'qlo', 'QL03p027430' => 'qlo', 'QL04p081380' => 'qlo', 'QL06p015642' => 'qlo', 'QL06p015650' => 'qlo', 'QL06p015686' => 'qlo', 'QL12p042927' => 'qlo', 'QL93p1863_0035' => 'qlo', 'RcHm_v2.0_Chr3g0450581' => 'rch', 'RcHm_v2.0_Chr4g0390371' => 'rch', 'RcHm_v2.0_Chr4g0390381' => 'rch', 'RcHm_v2.0_Chr4g0390491' => 'rch', 'RcHm_v2.0_Chr4g0390501' => 'rch', 'RcHm_v2.0_Chr6g0289231' => 'rch', 'Rhsim04G0190400' => 'rsi', 'Rhsim04G0190500' => 'rsi', 'Rhsim04G0190600' => 'rsi', 'Rhsim13G0031400' => 'rsi', 'Rhsim13G0165600' => 'rsi', 'RhsimUnG0114600' => 'rsi', 'RhsimUnG0114700' => 'rsi', 'Sabra02G0034800' => 'sbr', 'Sabra02G0035100' => 'sbr', 'Sabra05G0168600' => 'sbr', 'Sabra05G0168800' => 'sbr', 'Sabra08G0123700' => 'sbr', 'Sabra10G0031900' => 'sbr', 'Sabra13G0039000' => 'sbr', 'SalBow2G0782' => 'sbo', 'SalBow2G1403' => 'sbo', 'SalBow4G0074' => 'sbo', 'SalBow4G2635' => 'sbo', 'SalBow5G3010' => 'sbo', 'Sc05g0000870' => 'sci', 'Sc05g0000890' => 'sci', 'Sc13g0005000' => 'sci', 'Sc13g0005030' => 'sci', 'Sc19g0003790' => 'sci', 'Sc19g0003800' => 'sci', 'Sed0003467' => 'sed', 'Sed0009355' => 'sed', 'Sed0009894' => 'sed', 'Sed0011972' => 'sed', 'Sed0021483' => 'sed', 'Sed0021750' => 'sed', 'Sed0026279' => 'sed', 'SEGI_05312' => 'sgi', 'SEGI_10112' => 'sgi', 'SEGI_15835' => 'sgi', 'SEGI_30386' => 'sgi', 'SEGI_34122' => 'sgi', 'SEGI_35063' => 'sgi', 'SGA_v2.0_scaffold101G29794' => 'sas', 'SGA_v2.0_scaffold1G00573' => 'sas', 'SGA_v2.0_scaffold79G25637' => 'sas', 'SGA_v2.0_scaffold88G27283' => 'sas', 'SGA_v2.0_scaffold88G27285' => 'sas', 'SGA_v2.0_scaffold88G27331' => 'sas', 'SHI09937' => 'shi', 'SMO119G0302' => 'smo', 'SMO137G0231' => 'smo', 'SMO367G1151' => 'smo', 'Solyc02g082000.3' => 'sly', 'Solyc06g031670.3' => 'sly', 'Solyc06g053810.3' => 'sly', 'Solyc07g025457.1' => 'sly', 'Solyc08g059740.1' => 'sly', 'Solyc08g059750.3' => 'sly', 'Solyc09g083370.3' => 'sly', 'Solyc12g038950.3' => 'sly', 'Sopen02g026630' => 'spe', 'Sopen06g018930' => 'spe', 'Sopen06g018940' => 'spe', 'Sopen08g009460' => 'spe', 'Sopen09g032290' => 'spe', 'Sp1g03080' => 'spa', 'Sp1g03090' => 'spa', 'Sp1g05480' => 'spa', 'Sp2g07860' => 'spa', 'Sp2g08430' => 'spa', 'Sp2g08440' => 'spa', 'Sp2g26200' => 'spa', 'Sp4g13170' => 'spa', 'Sp6g33840' => 'spa', 'SpUn1204_0010' => 'spa', 'TAR365G0908' => 'tar', 'TAR381G1270' => 'tar', 'TAR381G1651' => 'tar', 'TAR625G1131' => 'tar', 'TAR633G0962' => 'tar', 'TAR633G1729' => 'tar', 'TAR633G1864' => 'tar', 'TAR636G0221' => 'tar', 'TAR636G0314' => 'tar', 'TAR636G3202' => 'tar', 'THA.LOC104800805' => 'tha', 'THA.LOC104801096' => 'tha', 'THA.LOC104801555' => 'tha', 'THA.LOC104808491' => 'tha', 'THA.LOC104808595' => 'tha', 'THA.LOC104815985' => 'tha', 'THA.LOC104822250' => 'tha', 'THA.LOC104826071' => 'tha', 'Thecc.01G265200' => 'tca', 'Thecc.01G265300' => 'tca', 'Thecc.01G265700' => 'tca', 'Thecc.03G109100' => 'tca', 'Thecc.04G245900' => 'tca', 'Thecc.04G246000' => 'tca', 'Thhalv10003334m.g' => 'esa', 'Thhalv10005508m.g' => 'esa', 'Thhalv10005643m.g' => 'esa', 'Thhalv10007316m.g' => 'esa', 'Thhalv10009006m.g' => 'esa', 'Thhalv10009309m.g' => 'esa', 'Thhalv10014917m.g' => 'esa', 'Thhalv10014919m.g' => 'esa', 'Thhalv10015393m.g' => 'esa', 'Thhalv10016515m.g' => 'esa', 'Thhalv10029242m.g' => 'esa', 'TPR.G16654' => 'tpr', 'TPR.G20589' => 'tpr', 'TPR.G23029' => 'tpr', 'TPR.G27731' => 'tpr', 'TPR.G28889' => 'tpr', 'TPR.G28899' => 'tpr', 'TPR.G30846' => 'tpr', 'TPR.G5452' => 'tpr', 'TPR.G5713' => 'tpr', 'TPR.G9046' => 'tpr', 'TPR.G9061' => 'tpr', 'TWI09G1075' => 'twi', 'TWI12G0806' => 'twi', 'TWI18G0108' => 'twi', 'TWI53G1361' => 'twi', 'TWI73G0185' => 'twi', 'TWI73G0427' => 'twi', 'unitig_37.g12001' => 'ugi', 'unitig_747.g21660' => 'ugi', 'unitig_748.g7232' => 'ugi', 'unitig_748.g7315' => 'ugi', 'unitig_85.g27262' => 'ugi', 'unitig_92.g28220' => 'ugi', 'vmacro02632' => 'vma', 'vmacro08410' => 'vma', 'vmacro08411' => 'vma', 'vmacro15407' => 'vma', 'VMungo0251G3619' => 'vmu', 'VMungo0720G1204' => 'vmu', 'VMungo0720G1918' => 'vmu', 'VMungo0720G2387' => 'vmu', 'VMungo0720G2961' => 'vmu', 'VMungo1215G2154' => 'vmu', 'VMungo1383G2411' => 'vmu', 'Zm00001eb051130' => 'zma', 'Zm00001eb116830' => 'zma', 'Zm00001eb116850' => 'zma', 'Zm00001eb151740' => 'zma', 'Zm00001eb292360' => 'zma', 'Zm00001eb301640' => 'zma' ) $gf_id = 'HOM05D000856' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000856' ) $data_identifier = 'HOM05D000856' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 13, 'ath' => (int) 10, 'atr' => (int) 1, 'acertr' => (int) 8, 'cqu' => (int) 6, 'bca' => (int) 21, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 11, 'car' => (int) 9, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 8, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 5, 'fan' => (int) 16, 'fve' => (int) 6, 'gma' => (int) 11, 'ghi' => (int) 19, 'gra' => (int) 9, 'vvi' => (int) 7, 'han' => (int) 17, 'cav' => (int) 5, 'hma' => (int) 2, 'vpl' => (int) 2, 'sun' => (int) 7, 'lal' => (int) 9, 'lja' => (int) 5, 'lonja' => (int) 9, 'lsa' => (int) 5, 'mes' => (int) 8, 'mpo' => (int) 3, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 10, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 15, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 9, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 9, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 6, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 5, 'spa' => (int) 10, 'tar' => (int) 10, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 11, 'tpr' => (int) 11, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 4, 'vmu' => (int) 7, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb301640' $species_info = array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ) $local_species = 'cde' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000856', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p00010' => 'bna', 'A03p04160' => 'bna', 'A03p17160' => 'bna', 'A04p23370' => 'bna', 'A05p14860' => 'bna', 'A08p37020' => 'bna', 'A09p08050' => 'bna', 'A09p66800' => 'bna', 'A09p67940' => 'bna', 'A10p02680' => 'bna', 'A10p05320' => 'bna', 'Aa31LG1G20560' => 'aar', 'Aa31LG1G20610' => 'aar', 'Aa31LG1G7810' => 'aar', 'Aa31LG5G3590' => 'aar', 'Aa31LG5G6140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3819' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4683' => 'aag', 'Actinidia04480' => 'ach', 'Actinidia05466' => 'ach', 'Actinidia08445' => 'ach', 'Actinidia21170' => 'ach', 'Actinidia24812' => 'ach', 'Actinidia24951' => 'ach', 'Actinidia40088' => 'ach', 'Ah.02g111660' => 'amhyb', 'Ah.11g048900' => 'amhyb', 'Ah.11g049910' => 'amhyb', 'AL1G13870' => 'aly', 'AL1G13880' => 'aly', 'AL1G16760' => 'aly', 'AL390U10020' => 'aly', 'AL4G25520' => 'aly', 'AL6G19890' => 'aly', 'AL6G19900' => 'aly', 'AL6G19910' => 'aly', 'AL8G40100' => 'aly', 'Aqoxy2G03562' => 'aox', 'Aqoxy5G00316' => 'aox', 'Aqoxy5G00926' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1628KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1H403S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2FU6SJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.882I6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8YRY2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YN1SN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AF70II' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZA8L1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F916KL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHRD8H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KTZ8QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S22EMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8M29T' => 'arhy', 'AT1G04270' => 'ath', 'AT1G04280' => 'ath', 'AT1G06750' => 'ath', 'AT1G33850' => 'ath', 'AT2G30630' => 'ath', 'AT5G09490' => 'ath', 'AT5G09500' => 'ath', 'AT5G09510' => 'ath', 'AT5G43640' => 'ath', 'AT5G63070' => 'ath', 'ATR0605G315' => 'atr', 'Atru.chr11.175' => 'acertr', 'Atru.chr11.653' => 'acertr', 'Atru.chr3.1616' => 'acertr', 'Atru.chr4.2230' => 'acertr', 'Atru.chr4.2232' => 'acertr', 'Atru.chr5.1598' => 'acertr', 'Atru.chr5.1600' => 'acertr', 'Atru.chr5.2188' => 'acertr', 'AUR62008326' => 'cqu', 'AUR62011922' => 'cqu', 'AUR62011924' => 'cqu', 'AUR62021771' => 'cqu', 'AUR62032237' => 'cqu', 'AUR62032240' => 'cqu', 'BcaB01g05572' => 'bca', 'BcaB02g10337' => 'bca', 'BcaB04g19944' => 'bca', 'BcaB05g21548' => 'bca', 'BcaB05g21549' => 'bca', 'BcaB05g23227' => 'bca', 'BcaB06g26256' => 'bca', 'BcaB06g26257' => 'bca', 'BcaB06g28379' => 'bca', 'BcaC02g11159' => 'bca', 'BcaC03g13258' => 'bca', 'BcaC03g13259' => 'bca', 'BcaC05g24456' => 'bca', 'BcaC05g24457' => 'bca', 'BcaC07g36922' => 'bca', 'BcaC07g36923' => 'bca', 'BcaC07g42050' => 'bca', 'BcaC07g42176' => 'bca', 'BcaC07g42195' => 'bca', 'BcaC07g42196' => 'bca', 'BcaNung06674' => 'bca', 'BolC2t06351H' => 'bol', 'BolC2t06352H' => 'bol', 'BolC3t12993H' => 'bol', 'BolC4t23525H' => 'bol', 'BolC4t27475H' => 'bol', 'BolC5t29025H' => 'bol', 'BolC5t29026H' => 'bol', 'BolC8t46898H' => 'bol', 'BolC8t46899H' => 'bol', 'BolC8t52630H' => 'bol', 'BolC8t52765H' => 'bol', 'BolC9t53824H' => 'bol', 'BraA03t09760Z' => 'bra', 'BraA03t10990Z' => 'bra', 'BraA05t20413Z' => 'bra', 'BraA08t35602Z' => 'bra', 'BraA09t36458Z' => 'bra', 'BraA09t42018Z' => 'bra', 'BraA09t42129Z' => 'bra', 'BraA10t42536Z' => 'bra', 'BraA10t42537Z' => 'bra', 'C01p10690' => 'bna', 'C02p03890' => 'bna', 'C02p03900' => 'bna', 'C03p04620' => 'bna', 'C04p19870' => 'bna', 'C04p59670' => 'bna', 'C05p02460' => 'bna', 'C05p02470' => 'bna', 'C08p00980' => 'bna', 'C08p00990' => 'bna', 'C08p51030' => 'bna', 'C08p52360' => 'bna', 'C09p09120' => 'bna', 'CAN.G19.15' => 'can', 'CAN.G251.10' => 'can', 'CAN.G251.9' => 'can', 'CAN.G398.24' => 'can', 'CAN.G410.32' => 'can', 'CAN.G881.2' => 'can', 'CANSAT01G3025' => 'cansat', 'CANSAT78G1211' => 'cansat', 'CANSAT78G1218' => 'cansat', 'CANSAT78G1521' => 'cansat', 'CANSAT78G1670' => 'cansat', 'CARHR003600' => 'chi', 'CARHR003610' => 'chi', 'CARHR006290' => 'chi', 'CARHR006430' => 'chi', 'CARHR124110' => 'chi', 'CARHR203870' => 'chi', 'CARHR203880' => 'chi', 'CARHR203890' => 'chi', 'CARHR276880' => 'chi', 'Carub.0001s0346' => 'cru', 'Carub.0001s0347' => 'cru', 'Carub.0001s0607' => 'cru', 'Carub.0003s2768' => 'cru', 'Carub.0003s2769' => 'cru', 'Carub.0004s1178' => 'cru', 'Carub.0006s0806' => 'cru', 'Carub.0006s0807' => 'cru', 'Carub.0006s0808' => 'cru', 'Carub.0008s0501' => 'cru', 'Carub.0008s2379' => 'cru', 'Ca_08655_v3' => 'car', 'Ca_08922_v3' => 'car', 'Ca_08923_v3' => 'car', 'Ca_09119_v3' => 'car', 'Ca_09703_v3' => 'car', 'Ca_09705_v3' => 'car', 'Ca_09835_v3' => 'car', 'Ca_26403_v3' => 'car', 'Ca_30719_v3' => 'car', 'CBR_g17958' => 'cbr', 'CBR_g40516' => 'cbr', 'Cc00_g05350' => 'ccan', 'Cc01_g18690' => 'ccan', 'Cc03_g04830' => 'ccan', 'Cc03_g04850' => 'ccan', 'CDE02G4469' => 'cde', 'CDE06G0883' => 'cde', 'CDE06G1295' => 'cde', 'CDE06G1390' => 'cde', 'CDE07G0584' => 'cde', 'CDE07G1084' => 'cde', 'CDE08G1259' => 'cde', 'Cfa002341' => 'cfa', 'Cfa024337' => 'cfa', 'Ciclev10004749m.g' => 'ccl', 'Ciclev10006127m.g' => 'ccl', 'Ciclev10019720m.g' => 'ccl', 'Ciclev10022652m.g' => 'ccl', 'CiPaw.01G190400' => 'cil', 'CiPaw.01G190500' => 'cil', 'CiPaw.02G116400' => 'cil', 'CiPaw.02G116500' => 'cil', 'CiPaw.04G183000' => 'cil', 'CiPaw.04G183300' => 'cil', 'ClCG05G004610' => 'cla', 'ClCG05G004620' => 'cla', 'ClCG06G006730' => 'cla', 'ClCG06G006740' => 'cla', 'ClCG11G003690' => 'cla', 'COL.COLO4_08276' => 'col', 'COL.COLO4_08277' => 'col', 'COL.COLO4_15787' => 'col', 'COL.COLO4_15789' => 'col', 'Cpa.g.c44815' => 'cpa', 'Cpa.g.sc52.144' => 'cpa', 'Cpa.g.sc58.46' => 'cpa', 'Cpa.g.sc58.47' => 'cpa', 'Cre08.g360900' => 'cre', 'CsaV3_2G013030' => 'csa', 'CsaV3_2G013050' => 'csa', 'CsaV3_2G015620' => 'csa', 'CsaV3_3G012590' => 'csa', 'CsaV3_3G012600' => 'csa', 'CSS0001641' => 'camsi', 'CSS0008310' => 'camsi', 'CSS0013011' => 'camsi', 'CSS0017147' => 'camsi', 'CSS0022970' => 'camsi', 'CSS0025655' => 'camsi', 'CSS0028665' => 'camsi', 'CSS0029117' => 'camsi', 'CSS0032024' => 'camsi', 'CSS0039681' => 'camsi', 'CSS0046516' => 'camsi', 'CSS0050307' => 'camsi', 'DCAR_005871' => 'dca', 'DCAR_007342' => 'dca', 'DCAR_024228' => 'dca', 'DCAR_027277' => 'dca', 'DCAR_030718' => 'dca', 'Dinv20287' => 'din', 'Dinv22461' => 'din', 'Dinv22464' => 'din', 'Dinv29912' => 'din', 'Dinv29913' => 'din', 'Dinv34580' => 'din', 'Dinv34582' => 'din', 'Dinv44632' => 'din', 'Duzib052G0266' => 'dzi', 'Duzib133G0907' => 'dzi', 'Duzib133G1034' => 'dzi', 'Duzib138G0207' => 'dzi', 'Duzib138G0491' => 'dzi', 'Duzib151G0812' => 'dzi', 'Duzib151G1166' => 'dzi', 'Duzib168G0192' => 'dzi', 'Duzib211G0077' => 'dzi', 'Duzib212G0429' => 'dzi', 'Duzib212G0472' => 'dzi', 'ECA233G2617' => 'eca', 'ECA236G4188' => 'eca', 'ECA240G0936' => 'eca', 'ECA240G1129' => 'eca', 'ECA247G0623' => 'eca', 'EL10Ac5g10451' => 'bvu', 'EL10Ac5g10453' => 'bvu', 'EL10Ac5g10894' => 'bvu', 'Eucgr.H00192' => 'egr', 'Eucgr.H00193' => 'egr', 'Eucgr.H00194' => 'egr', 'Eucgr.J01562' => 'egr', 'Eucgr.K03301' => 'egr', 'FAN02G0632' => 'fan', 'FAN05G5378' => 'fan', 'FAN09G3247' => 'fan', 'FAN12G0435' => 'fan', 'FAN12G2426' => 'fan', 'FAN14G1707' => 'fan', 'FAN14G4725' => 'fan', 'FAN15G2071' => 'fan', 'FAN17G3065' => 'fan', 'FAN19G1376' => 'fan', 'FAN20G0354' => 'fan', 'FAN20G2429' => 'fan', 'FAN20G2658' => 'fan', 'FAN24G2343' => 'fan', 'FAN27G2362' => 'fan', 'FAN28G1765' => 'fan', 'FvH4_1g16020' => 'fve', 'FvH4_2g04890' => 'fve', 'FvH4_2g22270' => 'fve', 'FvH4_4g02630' => 'fve', 'FvH4_4g02640' => 'fve', 'FvH4_6g02650' => 'fve', 'Glyma.02G140600' => 'gma', 'Glyma.03G159900' => 'gma', 'Glyma.05G234800' => 'gma', 'Glyma.07G269600' => 'gma', 'Glyma.08G042300' => 'gma', 'Glyma.10G033500' => 'gma', 'Glyma.10G185200' => 'gma', 'Glyma.17G004300' => 'gma', 'Glyma.19G161900' => 'gma', 'Glyma.20G205100' => 'gma', 'Glyma.20G205200' => 'gma', 'Gohir.A01G139101' => 'ghi', 'Gohir.A02G035600' => 'ghi', 'Gohir.A02G117901' => 'ghi', 'Gohir.A07G210100' => 'ghi', 'Gohir.A07G210200' => 'ghi', 'Gohir.A08G061100' => 'ghi', 'Gohir.A09G223000' => 'ghi', 'Gohir.A09G223100' => 'ghi', 'Gohir.A10G113900' => 'ghi', 'Gohir.A10G114000' => 'ghi', 'Gohir.D02G042300' => 'ghi', 'Gohir.D07G216100' => 'ghi', 'Gohir.D07G216200' => 'ghi', 'Gohir.D08G070400' => 'ghi', 'Gohir.D09G225000' => 'ghi', 'Gohir.D09G225100' => 'ghi', 'Gohir.D10G152300' => 'ghi', 'Gohir.D10G153200' => 'ghi', 'Gohir.D11G133701' => 'ghi', 'Gorai.004G074100' => 'gra', 'Gorai.005G046800' => 'gra', 'Gorai.006G246500' => 'gra', 'Gorai.006G246600' => 'gra', 'Gorai.007G142900' => 'gra', 'Gorai.011G171000' => 'gra', 'Gorai.011G171100' => 'gra', 'Gorai.013G104300' => 'gra', 'Gorai.013G104400' => 'gra', 'GSVIVG01000754001' => 'vvi', 'GSVIVG01000756001' => 'vvi', 'GSVIVG01010903001' => 'vvi', 'GSVIVG01017623001' => 'vvi', 'GSVIVG01018113001' => 'vvi', 'GSVIVG01018116001' => 'vvi', 'GSVIVG01018118001' => 'vvi', 'HanXRQChr03g0076211' => 'han', 'HanXRQChr03g0092431' => 'han', 'HanXRQChr03g0092441' => 'han', 'HanXRQChr03g0092591' => 'han', 'HanXRQChr03g0092671' => 'han', 'HanXRQChr03g0092681' => 'han', 'HanXRQChr03g0092691' => 'han', 'HanXRQChr03g0092701' => 'han', 'HanXRQChr03g0092721' => 'han', 'HanXRQChr03g0092731' => 'han', 'HanXRQChr04g0113681' => 'han', 'HanXRQChr10g0281371' => 'han', 'HanXRQChr11g0337141' => 'han', 'HanXRQChr13g0424521' => 'han', 'HanXRQChr13g0424531' => 'han', 'HanXRQChr13g0424541' => 'han', 'HanXRQChr16g0498221' => 'han', 'Haze_04377' => 'cav', 'Haze_11298' => 'cav', 'Haze_24547' => 'cav', 'Haze_24550' => 'cav', 'Haze_26587' => 'cav', 'Hma1.2p1_0650F.1_g195410' => 'hma', 'Hma1.2p1_0893F.1_g233470' => 'hma', 'HPP92_006508' => 'vpl', 'HPP92_024780' => 'vpl', 'Hund02688' => 'sun', 'Hund09380' => 'sun', 'Hund09381' => 'sun', 'Hund09832' => 'sun', 'Hund09833' => 'sun', 'Hund11351' => 'sun', 'Hund11513' => 'sun', 'Lalb_Chr06g0162591' => 'lal', 'Lalb_Chr06g0162601' => 'lal', 'Lalb_Chr06g0169321' => 'lal', 'Lalb_Chr09g0330951' => 'lal', 'Lalb_Chr16g0387631' => 'lal', 'Lalb_Chr21g0306241' => 'lal', 'Lalb_Chr25g0290051' => 'lal', 'Lalb_Chr25g0290061' => 'lal', 'Lalb_Chr25g0290071' => 'lal', 'Lj1g0003876' => 'lja', 'Lj1P1207T36' => 'lonja', 'Lj2C1156G12' => 'lonja', 'Lj3A793G39' => 'lonja', 'Lj3C580G2' => 'lonja', 'Lj3C780G2' => 'lonja', 'Lj3C780T4' => 'lonja', 'Lj3C793G9' => 'lonja', 'Lj4g0012960' => 'lja', 'Lj5g0021252' => 'lja', 'Lj5g0021484' => 'lja', 'Lj5g0024528' => 'lja', 'Lj6A399T12' => 'lonja', 'Lj6A656G65' => 'lonja', 'Lsat_1_v5_gn_3_125500' => 'lsa', 'Lsat_1_v5_gn_3_125540' => 'lsa', 'Lsat_1_v5_gn_5_72701' => 'lsa', 'Lsat_1_v5_gn_8_91560' => 'lsa', 'Lsat_1_v5_gn_9_9640' => 'lsa', 'Manes.01G200600' => 'mes', 'Manes.01G200700' => 'mes', 'Manes.03G168900' => 'mes', 'Manes.03G169000' => 'mes', 'Manes.05G085801' => 'mes', 'Manes.05G086200' => 'mes', 'Manes.15G036700' => 'mes', 'Manes.15G036900' => 'mes', 'Mapoly0004s0172' => 'mpo', 'Mapoly0023s0001' => 'mpo', 'Mapoly0142s0012' => 'mpo', 'MBI01_g32854_MAGBIO' => 'mbi', 'MBI11_g24427_MAGBIO' => 'mbi', 'MBI11_g47319_MAGBIO' => 'mbi', 'MCO01G433' => 'mco', 'MD00G1187800' => 'mdo', 'MD04G1226500' => 'mdo', 'MD05G1203900' => 'mdo', 'MD10G1191100' => 'mdo', 'MD12G1243500' => 'mdo', 'MD13G1207000' => 'mdo', 'MD13G1207100' => 'mdo', 'MD16G1208600' => 'mdo', 'Medtr1g050352' => 'mtr', 'Medtr1g070385' => 'mtr', 'Medtr1g070450' => 'mtr', 'Medtr1g075200' => 'mtr', 'Medtr1g075250' => 'mtr', 'Medtr1g075260' => 'mtr', 'Medtr1g475250' => 'mtr', 'Medtr4g075450' => 'mtr', 'Medtr7g096300' => 'mtr', 'Medtr8g105110' => 'mtr', 'MELO3C006470.2' => 'cme', 'MELO3C006471.2' => 'cme', 'MELO3C020772.2' => 'cme', 'MELO3C026780.2' => 'cme', 'MELO3C026781.2' => 'cme', 'Migut.D00390' => 'egut', 'Migut.G00435' => 'egut', 'Migut.G00436' => 'egut', 'Migut.G00718' => 'egut', 'MSTRG.21891' => 'ama', 'MSTRG.26910' => 'ama', 'MSTRG.4099' => 'ama', 'MSTRG.9925' => 'ama', 'Nitab4.5_0000165g0010' => 'nta', 'Nitab4.5_0000209g0180' => 'nta', 'Nitab4.5_0000244g0440' => 'nta', 'Nitab4.5_0000525g0220' => 'nta', 'Nitab4.5_0001597g0020' => 'nta', 'Nitab4.5_0001878g0040' => 'nta', 'Nitab4.5_0001878g0060' => 'nta', 'Nitab4.5_0002838g0100' => 'nta', 'Nitab4.5_0002838g0120' => 'nta', 'Nitab4.5_0004798g0030' => 'nta', 'Nitab4.5_0005420g0010' => 'nta', 'Nitab4.5_0005507g0010' => 'nta', 'Nitab4.5_0005574g0020' => 'nta', 'Nitab4.5_0005838g0010' => 'nta', 'Nitab4.5_0010580g0020' => 'nta', 'Nn1g02599' => 'nnu', 'Nn1g02608' => 'nnu', 'Nn3g17742' => 'nnu', 'Nn3g19534' => 'nnu', 'Nn3g19535' => 'nnu', 'Oeu008790.1' => 'oeu', 'Oeu008792.1' => 'oeu', 'Oeu032590.1' => 'oeu', 'Oeu035349.1' => 'oeu', 'Oeu049791.1' => 'oeu', 'Os01g0774500' => 'osa', 'Os03g0628800' => 'osa', 'Os03g0798600' => 'osa', 'Os05g0508800' => 'osa', 'Peaxi162Scf00036g02018' => 'pax', 'Peaxi162Scf00578g00032' => 'pax', 'Peaxi162Scf00578g00317' => 'pax', 'Peaxi162Scf00785g00114' => 'pax', 'Peaxi162Scf00813g00119' => 'pax', 'Peaxi162Scf00906g00227' => 'pax', 'PGR004G0875' => 'pgr', 'PGR004G2424' => 'pgr', 'PGR031G1239' => 'pgr', 'PGR031G2474' => 'pgr', 'PGR044G0423' => 'pgr', 'PGSC0003DMG400001128' => 'stu', 'PGSC0003DMG400007336' => 'stu', 'PGSC0003DMG400016318' => 'stu', 'PGSC0003DMG400016319' => 'stu', 'PGSC0003DMG400018074' => 'stu', 'Phvul.001G157700' => 'pvu', 'Phvul.002G148550' => 'pvu', 'Phvul.002G320200' => 'pvu', 'Phvul.003G089200' => 'pvu', 'Phvul.007G126000' => 'pvu', 'Phvul.007G126100' => 'pvu', 'Phvul.007G178000' => 'pvu', 'Phvul.007G178200' => 'pvu', 'Potri.002G043000' => 'ptr', 'Potri.002G043200' => 'ptr', 'Potri.003G123750' => 'ptr', 'Potri.005G055401' => 'ptr', 'Potri.005G219700' => 'ptr', 'Potri.005G220000' => 'ptr', 'Potri.008G161901' => 'ptr', 'Potri.008G162000' => 'ptr', 'Potri.008G162400' => 'ptr', 'Potri.010G076900' => 'ptr', 'Pp3c12_9180' => 'ppa', 'Pp3c13_19770' => 'ppa', 'Pp3c14_22950' => 'ppa', 'Pp3c16_12160' => 'ppa', 'Pp3c27_7820' => 'ppa', 'Pp3c2_3490' => 'ppa', 'Pp3c3_23700' => 'ppa', 'Pp3c3_36520' => 'ppa', 'Pp3c4_15250' => 'ppa', 'PRCOL_00007002' => 'pco', 'Prupe.1G030600' => 'ppe', 'Prupe.1G030700' => 'ppe', 'Prupe.6G345200' => 'ppe', 'Prupe.8G230300' => 'ppe', 'Prupe.8G230500' => 'ppe', 'Psat3g059600' => 'psa', 'Psat5g200920' => 'psa', 'Psat6g056440' => 'psa', 'Psat6g057360' => 'psa', 'Psat6g134120' => 'psa', 'Psat6g134160' => 'psa', 'Psat7g008640' => 'psa', 'Psat7g185240' => 'psa', 'PSO017G1330' => 'pso', 'PSO063G6097' => 'pso', 'PSO170G0835' => 'pso', 'PSO170G2499' => 'pso', 'PSO210G5058' => 'pso', 'PSO210G6154' => 'pso', 'PSO585G0031' => 'pso', 'PSO832G0264' => 'pso', 'PSO832G4288' => 'pso', 'QL03p027355' => 'qlo', 'QL03p027430' => 'qlo', 'QL04p081380' => 'qlo', 'QL06p015642' => 'qlo', 'QL06p015650' => 'qlo', 'QL06p015686' => 'qlo', 'QL12p042927' => 'qlo', 'QL93p1863_0035' => 'qlo', 'RcHm_v2.0_Chr3g0450581' => 'rch', 'RcHm_v2.0_Chr4g0390371' => 'rch', 'RcHm_v2.0_Chr4g0390381' => 'rch', 'RcHm_v2.0_Chr4g0390491' => 'rch', 'RcHm_v2.0_Chr4g0390501' => 'rch', 'RcHm_v2.0_Chr6g0289231' => 'rch', 'Rhsim04G0190400' => 'rsi', 'Rhsim04G0190500' => 'rsi', 'Rhsim04G0190600' => 'rsi', 'Rhsim13G0031400' => 'rsi', 'Rhsim13G0165600' => 'rsi', 'RhsimUnG0114600' => 'rsi', 'RhsimUnG0114700' => 'rsi', 'Sabra02G0034800' => 'sbr', 'Sabra02G0035100' => 'sbr', 'Sabra05G0168600' => 'sbr', 'Sabra05G0168800' => 'sbr', 'Sabra08G0123700' => 'sbr', 'Sabra10G0031900' => 'sbr', 'Sabra13G0039000' => 'sbr', 'SalBow2G0782' => 'sbo', 'SalBow2G1403' => 'sbo', 'SalBow4G0074' => 'sbo', 'SalBow4G2635' => 'sbo', 'SalBow5G3010' => 'sbo', 'Sc05g0000870' => 'sci', 'Sc05g0000890' => 'sci', 'Sc13g0005000' => 'sci', 'Sc13g0005030' => 'sci', 'Sc19g0003790' => 'sci', 'Sc19g0003800' => 'sci', 'Sed0003467' => 'sed', 'Sed0009355' => 'sed', 'Sed0009894' => 'sed', 'Sed0011972' => 'sed', 'Sed0021483' => 'sed', 'Sed0021750' => 'sed', 'Sed0026279' => 'sed', 'SEGI_05312' => 'sgi', 'SEGI_10112' => 'sgi', 'SEGI_15835' => 'sgi', 'SEGI_30386' => 'sgi', 'SEGI_34122' => 'sgi', 'SEGI_35063' => 'sgi', 'SGA_v2.0_scaffold101G29794' => 'sas', 'SGA_v2.0_scaffold1G00573' => 'sas', 'SGA_v2.0_scaffold79G25637' => 'sas', 'SGA_v2.0_scaffold88G27283' => 'sas', 'SGA_v2.0_scaffold88G27285' => 'sas', 'SGA_v2.0_scaffold88G27331' => 'sas', 'SHI09937' => 'shi', 'SMO119G0302' => 'smo', 'SMO137G0231' => 'smo', 'SMO367G1151' => 'smo', 'Solyc02g082000.3' => 'sly', 'Solyc06g031670.3' => 'sly', 'Solyc06g053810.3' => 'sly', 'Solyc07g025457.1' => 'sly', 'Solyc08g059740.1' => 'sly', 'Solyc08g059750.3' => 'sly', 'Solyc09g083370.3' => 'sly', 'Solyc12g038950.3' => 'sly', 'Sopen02g026630' => 'spe', 'Sopen06g018930' => 'spe', 'Sopen06g018940' => 'spe', 'Sopen08g009460' => 'spe', 'Sopen09g032290' => 'spe', 'Sp1g03080' => 'spa', 'Sp1g03090' => 'spa', 'Sp1g05480' => 'spa', 'Sp2g07860' => 'spa', 'Sp2g08430' => 'spa', 'Sp2g08440' => 'spa', 'Sp2g26200' => 'spa', 'Sp4g13170' => 'spa', 'Sp6g33840' => 'spa', 'SpUn1204_0010' => 'spa', 'TAR365G0908' => 'tar', 'TAR381G1270' => 'tar', 'TAR381G1651' => 'tar', 'TAR625G1131' => 'tar', 'TAR633G0962' => 'tar', 'TAR633G1729' => 'tar', 'TAR633G1864' => 'tar', 'TAR636G0221' => 'tar', 'TAR636G0314' => 'tar', 'TAR636G3202' => 'tar', 'THA.LOC104800805' => 'tha', 'THA.LOC104801096' => 'tha', 'THA.LOC104801555' => 'tha', 'THA.LOC104808491' => 'tha', 'THA.LOC104808595' => 'tha', 'THA.LOC104815985' => 'tha', 'THA.LOC104822250' => 'tha', 'THA.LOC104826071' => 'tha', 'Thecc.01G265200' => 'tca', 'Thecc.01G265300' => 'tca', 'Thecc.01G265700' => 'tca', 'Thecc.03G109100' => 'tca', 'Thecc.04G245900' => 'tca', 'Thecc.04G246000' => 'tca', 'Thhalv10003334m.g' => 'esa', 'Thhalv10005508m.g' => 'esa', 'Thhalv10005643m.g' => 'esa', 'Thhalv10007316m.g' => 'esa', 'Thhalv10009006m.g' => 'esa', 'Thhalv10009309m.g' => 'esa', 'Thhalv10014917m.g' => 'esa', 'Thhalv10014919m.g' => 'esa', 'Thhalv10015393m.g' => 'esa', 'Thhalv10016515m.g' => 'esa', 'Thhalv10029242m.g' => 'esa', 'TPR.G16654' => 'tpr', 'TPR.G20589' => 'tpr', 'TPR.G23029' => 'tpr', 'TPR.G27731' => 'tpr', 'TPR.G28889' => 'tpr', 'TPR.G28899' => 'tpr', 'TPR.G30846' => 'tpr', 'TPR.G5452' => 'tpr', 'TPR.G5713' => 'tpr', 'TPR.G9046' => 'tpr', 'TPR.G9061' => 'tpr', 'TWI09G1075' => 'twi', 'TWI12G0806' => 'twi', 'TWI18G0108' => 'twi', 'TWI53G1361' => 'twi', 'TWI73G0185' => 'twi', 'TWI73G0427' => 'twi', 'unitig_37.g12001' => 'ugi', 'unitig_747.g21660' => 'ugi', 'unitig_748.g7232' => 'ugi', 'unitig_748.g7315' => 'ugi', 'unitig_85.g27262' => 'ugi', 'unitig_92.g28220' => 'ugi', 'vmacro02632' => 'vma', 'vmacro08410' => 'vma', 'vmacro08411' => 'vma', 'vmacro15407' => 'vma', 'VMungo0251G3619' => 'vmu', 'VMungo0720G1204' => 'vmu', 'VMungo0720G1918' => 'vmu', 'VMungo0720G2387' => 'vmu', 'VMungo0720G2961' => 'vmu', 'VMungo1215G2154' => 'vmu', 'VMungo1383G2411' => 'vmu', 'Zm00001eb051130' => 'zma', 'Zm00001eb116830' => 'zma', 'Zm00001eb116850' => 'zma', 'Zm00001eb151740' => 'zma', 'Zm00001eb292360' => 'zma', 'Zm00001eb301640' => 'zma' ), 'gf_id' => 'HOM05D000856', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000856' ), 'data_identifier' => 'HOM05D000856', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000856', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p00010' => 'bna', 'A03p04160' => 'bna', 'A03p17160' => 'bna', 'A04p23370' => 'bna', 'A05p14860' => 'bna', 'A08p37020' => 'bna', 'A09p08050' => 'bna', 'A09p66800' => 'bna', 'A09p67940' => 'bna', 'A10p02680' => 'bna', 'A10p05320' => 'bna', 'Aa31LG1G20560' => 'aar', 'Aa31LG1G20610' => 'aar', 'Aa31LG1G7810' => 'aar', 'Aa31LG5G3590' => 'aar', 'Aa31LG5G6140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3819' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4683' => 'aag', 'Actinidia04480' => 'ach', 'Actinidia05466' => 'ach', 'Actinidia08445' => 'ach', 'Actinidia21170' => 'ach', 'Actinidia24812' => 'ach', 'Actinidia24951' => 'ach', 'Actinidia40088' => 'ach', 'Ah.02g111660' => 'amhyb', 'Ah.11g048900' => 'amhyb', 'Ah.11g049910' => 'amhyb', 'AL1G13870' => 'aly', 'AL1G13880' => 'aly', 'AL1G16760' => 'aly', 'AL390U10020' => 'aly', 'AL4G25520' => 'aly', 'AL6G19890' => 'aly', 'AL6G19900' => 'aly', 'AL6G19910' => 'aly', 'AL8G40100' => 'aly', 'Aqoxy2G03562' => 'aox', 'Aqoxy5G00316' => 'aox', 'Aqoxy5G00926' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1628KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1H403S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2FU6SJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.882I6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8YRY2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YN1SN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AF70II' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZA8L1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F916KL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHRD8H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KTZ8QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S22EMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8M29T' => 'arhy', 'AT1G04270' => 'ath', 'AT1G04280' => 'ath', 'AT1G06750' => 'ath', 'AT1G33850' => 'ath', 'AT2G30630' => 'ath', 'AT5G09490' => 'ath', 'AT5G09500' => 'ath', 'AT5G09510' => 'ath', 'AT5G43640' => 'ath', 'AT5G63070' => 'ath', 'ATR0605G315' => 'atr', 'Atru.chr11.175' => 'acertr', 'Atru.chr11.653' => 'acertr', 'Atru.chr3.1616' => 'acertr', 'Atru.chr4.2230' => 'acertr', 'Atru.chr4.2232' => 'acertr', 'Atru.chr5.1598' => 'acertr', 'Atru.chr5.1600' => 'acertr', 'Atru.chr5.2188' => 'acertr', 'AUR62008326' => 'cqu', 'AUR62011922' => 'cqu', 'AUR62011924' => 'cqu', 'AUR62021771' => 'cqu', 'AUR62032237' => 'cqu', 'AUR62032240' => 'cqu', 'BcaB01g05572' => 'bca', 'BcaB02g10337' => 'bca', 'BcaB04g19944' => 'bca', 'BcaB05g21548' => 'bca', 'BcaB05g21549' => 'bca', 'BcaB05g23227' => 'bca', 'BcaB06g26256' => 'bca', 'BcaB06g26257' => 'bca', 'BcaB06g28379' => 'bca', 'BcaC02g11159' => 'bca', 'BcaC03g13258' => 'bca', 'BcaC03g13259' => 'bca', 'BcaC05g24456' => 'bca', 'BcaC05g24457' => 'bca', 'BcaC07g36922' => 'bca', 'BcaC07g36923' => 'bca', 'BcaC07g42050' => 'bca', 'BcaC07g42176' => 'bca', 'BcaC07g42195' => 'bca', 'BcaC07g42196' => 'bca', 'BcaNung06674' => 'bca', 'BolC2t06351H' => 'bol', 'BolC2t06352H' => 'bol', 'BolC3t12993H' => 'bol', 'BolC4t23525H' => 'bol', 'BolC4t27475H' => 'bol', 'BolC5t29025H' => 'bol', 'BolC5t29026H' => 'bol', 'BolC8t46898H' => 'bol', 'BolC8t46899H' => 'bol', 'BolC8t52630H' => 'bol', 'BolC8t52765H' => 'bol', 'BolC9t53824H' => 'bol', 'BraA03t09760Z' => 'bra', 'BraA03t10990Z' => 'bra', 'BraA05t20413Z' => 'bra', 'BraA08t35602Z' => 'bra', 'BraA09t36458Z' => 'bra', 'BraA09t42018Z' => 'bra', 'BraA09t42129Z' => 'bra', 'BraA10t42536Z' => 'bra', 'BraA10t42537Z' => 'bra', 'C01p10690' => 'bna', 'C02p03890' => 'bna', 'C02p03900' => 'bna', 'C03p04620' => 'bna', 'C04p19870' => 'bna', 'C04p59670' => 'bna', 'C05p02460' => 'bna', 'C05p02470' => 'bna', 'C08p00980' => 'bna', 'C08p00990' => 'bna', 'C08p51030' => 'bna', 'C08p52360' => 'bna', 'C09p09120' => 'bna', 'CAN.G19.15' => 'can', 'CAN.G251.10' => 'can', 'CAN.G251.9' => 'can', 'CAN.G398.24' => 'can', 'CAN.G410.32' => 'can', 'CAN.G881.2' => 'can', 'CANSAT01G3025' => 'cansat', 'CANSAT78G1211' => 'cansat', 'CANSAT78G1218' => 'cansat', 'CANSAT78G1521' => 'cansat', 'CANSAT78G1670' => 'cansat', 'CARHR003600' => 'chi', 'CARHR003610' => 'chi', 'CARHR006290' => 'chi', 'CARHR006430' => 'chi', 'CARHR124110' => 'chi', 'CARHR203870' => 'chi', 'CARHR203880' => 'chi', 'CARHR203890' => 'chi', 'CARHR276880' => 'chi', 'Carub.0001s0346' => 'cru', 'Carub.0001s0347' => 'cru', 'Carub.0001s0607' => 'cru', 'Carub.0003s2768' => 'cru', 'Carub.0003s2769' => 'cru', 'Carub.0004s1178' => 'cru', 'Carub.0006s0806' => 'cru', 'Carub.0006s0807' => 'cru', 'Carub.0006s0808' => 'cru', 'Carub.0008s0501' => 'cru', 'Carub.0008s2379' => 'cru', 'Ca_08655_v3' => 'car', 'Ca_08922_v3' => 'car', 'Ca_08923_v3' => 'car', 'Ca_09119_v3' => 'car', 'Ca_09703_v3' => 'car', 'Ca_09705_v3' => 'car', 'Ca_09835_v3' => 'car', 'Ca_26403_v3' => 'car', 'Ca_30719_v3' => 'car', 'CBR_g17958' => 'cbr', 'CBR_g40516' => 'cbr', 'Cc00_g05350' => 'ccan', 'Cc01_g18690' => 'ccan', 'Cc03_g04830' => 'ccan', 'Cc03_g04850' => 'ccan', 'CDE02G4469' => 'cde', 'CDE06G0883' => 'cde', 'CDE06G1295' => 'cde', 'CDE06G1390' => 'cde', 'CDE07G0584' => 'cde', 'CDE07G1084' => 'cde', 'CDE08G1259' => 'cde', 'Cfa002341' => 'cfa', 'Cfa024337' => 'cfa', 'Ciclev10004749m.g' => 'ccl', 'Ciclev10006127m.g' => 'ccl', 'Ciclev10019720m.g' => 'ccl', 'Ciclev10022652m.g' => 'ccl', 'CiPaw.01G190400' => 'cil', 'CiPaw.01G190500' => 'cil', 'CiPaw.02G116400' => 'cil', 'CiPaw.02G116500' => 'cil', 'CiPaw.04G183000' => 'cil', 'CiPaw.04G183300' => 'cil', 'ClCG05G004610' => 'cla', 'ClCG05G004620' => 'cla', 'ClCG06G006730' => 'cla', 'ClCG06G006740' => 'cla', 'ClCG11G003690' => 'cla', 'COL.COLO4_08276' => 'col', 'COL.COLO4_08277' => 'col', 'COL.COLO4_15787' => 'col', 'COL.COLO4_15789' => 'col', 'Cpa.g.c44815' => 'cpa', 'Cpa.g.sc52.144' => 'cpa', 'Cpa.g.sc58.46' => 'cpa', 'Cpa.g.sc58.47' => 'cpa', 'Cre08.g360900' => 'cre', 'CsaV3_2G013030' => 'csa', 'CsaV3_2G013050' => 'csa', 'CsaV3_2G015620' => 'csa', 'CsaV3_3G012590' => 'csa', 'CsaV3_3G012600' => 'csa', 'CSS0001641' => 'camsi', 'CSS0008310' => 'camsi', 'CSS0013011' => 'camsi', 'CSS0017147' => 'camsi', 'CSS0022970' => 'camsi', 'CSS0025655' => 'camsi', 'CSS0028665' => 'camsi', 'CSS0029117' => 'camsi', 'CSS0032024' => 'camsi', 'CSS0039681' => 'camsi', 'CSS0046516' => 'camsi', 'CSS0050307' => 'camsi', 'DCAR_005871' => 'dca', 'DCAR_007342' => 'dca', 'DCAR_024228' => 'dca', 'DCAR_027277' => 'dca', 'DCAR_030718' => 'dca', 'Dinv20287' => 'din', 'Dinv22461' => 'din', 'Dinv22464' => 'din', 'Dinv29912' => 'din', 'Dinv29913' => 'din', 'Dinv34580' => 'din', 'Dinv34582' => 'din', 'Dinv44632' => 'din', 'Duzib052G0266' => 'dzi', 'Duzib133G0907' => 'dzi', 'Duzib133G1034' => 'dzi', 'Duzib138G0207' => 'dzi', 'Duzib138G0491' => 'dzi', 'Duzib151G0812' => 'dzi', 'Duzib151G1166' => 'dzi', 'Duzib168G0192' => 'dzi', 'Duzib211G0077' => 'dzi', 'Duzib212G0429' => 'dzi', 'Duzib212G0472' => 'dzi', 'ECA233G2617' => 'eca', 'ECA236G4188' => 'eca', 'ECA240G0936' => 'eca', 'ECA240G1129' => 'eca', 'ECA247G0623' => 'eca', 'EL10Ac5g10451' => 'bvu', 'EL10Ac5g10453' => 'bvu', 'EL10Ac5g10894' => 'bvu', 'Eucgr.H00192' => 'egr', 'Eucgr.H00193' => 'egr', 'Eucgr.H00194' => 'egr', 'Eucgr.J01562' => 'egr', 'Eucgr.K03301' => 'egr', 'FAN02G0632' => 'fan', 'FAN05G5378' => 'fan', 'FAN09G3247' => 'fan', 'FAN12G0435' => 'fan', 'FAN12G2426' => 'fan', 'FAN14G1707' => 'fan', 'FAN14G4725' => 'fan', 'FAN15G2071' => 'fan', 'FAN17G3065' => 'fan', 'FAN19G1376' => 'fan', 'FAN20G0354' => 'fan', 'FAN20G2429' => 'fan', 'FAN20G2658' => 'fan', 'FAN24G2343' => 'fan', 'FAN27G2362' => 'fan', 'FAN28G1765' => 'fan', 'FvH4_1g16020' => 'fve', 'FvH4_2g04890' => 'fve', 'FvH4_2g22270' => 'fve', 'FvH4_4g02630' => 'fve', 'FvH4_4g02640' => 'fve', 'FvH4_6g02650' => 'fve', 'Glyma.02G140600' => 'gma', 'Glyma.03G159900' => 'gma', 'Glyma.05G234800' => 'gma', 'Glyma.07G269600' => 'gma', 'Glyma.08G042300' => 'gma', 'Glyma.10G033500' => 'gma', 'Glyma.10G185200' => 'gma', 'Glyma.17G004300' => 'gma', 'Glyma.19G161900' => 'gma', 'Glyma.20G205100' => 'gma', 'Glyma.20G205200' => 'gma', 'Gohir.A01G139101' => 'ghi', 'Gohir.A02G035600' => 'ghi', 'Gohir.A02G117901' => 'ghi', 'Gohir.A07G210100' => 'ghi', 'Gohir.A07G210200' => 'ghi', 'Gohir.A08G061100' => 'ghi', 'Gohir.A09G223000' => 'ghi', 'Gohir.A09G223100' => 'ghi', 'Gohir.A10G113900' => 'ghi', 'Gohir.A10G114000' => 'ghi', 'Gohir.D02G042300' => 'ghi', 'Gohir.D07G216100' => 'ghi', 'Gohir.D07G216200' => 'ghi', 'Gohir.D08G070400' => 'ghi', 'Gohir.D09G225000' => 'ghi', 'Gohir.D09G225100' => 'ghi', 'Gohir.D10G152300' => 'ghi', 'Gohir.D10G153200' => 'ghi', 'Gohir.D11G133701' => 'ghi', 'Gorai.004G074100' => 'gra', 'Gorai.005G046800' => 'gra', 'Gorai.006G246500' => 'gra', 'Gorai.006G246600' => 'gra', 'Gorai.007G142900' => 'gra', 'Gorai.011G171000' => 'gra', 'Gorai.011G171100' => 'gra', 'Gorai.013G104300' => 'gra', 'Gorai.013G104400' => 'gra', 'GSVIVG01000754001' => 'vvi', 'GSVIVG01000756001' => 'vvi', 'GSVIVG01010903001' => 'vvi', 'GSVIVG01017623001' => 'vvi', 'GSVIVG01018113001' => 'vvi', 'GSVIVG01018116001' => 'vvi', 'GSVIVG01018118001' => 'vvi', 'HanXRQChr03g0076211' => 'han', 'HanXRQChr03g0092431' => 'han', 'HanXRQChr03g0092441' => 'han', 'HanXRQChr03g0092591' => 'han', 'HanXRQChr03g0092671' => 'han', 'HanXRQChr03g0092681' => 'han', 'HanXRQChr03g0092691' => 'han', 'HanXRQChr03g0092701' => 'han', 'HanXRQChr03g0092721' => 'han', 'HanXRQChr03g0092731' => 'han', 'HanXRQChr04g0113681' => 'han', 'HanXRQChr10g0281371' => 'han', 'HanXRQChr11g0337141' => 'han', 'HanXRQChr13g0424521' => 'han', 'HanXRQChr13g0424531' => 'han', 'HanXRQChr13g0424541' => 'han', 'HanXRQChr16g0498221' => 'han', 'Haze_04377' => 'cav', 'Haze_11298' => 'cav', 'Haze_24547' => 'cav', 'Haze_24550' => 'cav', 'Haze_26587' => 'cav', 'Hma1.2p1_0650F.1_g195410' => 'hma', 'Hma1.2p1_0893F.1_g233470' => 'hma', 'HPP92_006508' => 'vpl', 'HPP92_024780' => 'vpl', 'Hund02688' => 'sun', 'Hund09380' => 'sun', 'Hund09381' => 'sun', 'Hund09832' => 'sun', 'Hund09833' => 'sun', 'Hund11351' => 'sun', 'Hund11513' => 'sun', 'Lalb_Chr06g0162591' => 'lal', 'Lalb_Chr06g0162601' => 'lal', 'Lalb_Chr06g0169321' => 'lal', 'Lalb_Chr09g0330951' => 'lal', 'Lalb_Chr16g0387631' => 'lal', 'Lalb_Chr21g0306241' => 'lal', 'Lalb_Chr25g0290051' => 'lal', 'Lalb_Chr25g0290061' => 'lal', 'Lalb_Chr25g0290071' => 'lal', 'Lj1g0003876' => 'lja', 'Lj1P1207T36' => 'lonja', 'Lj2C1156G12' => 'lonja', 'Lj3A793G39' => 'lonja', 'Lj3C580G2' => 'lonja', 'Lj3C780G2' => 'lonja', 'Lj3C780T4' => 'lonja', 'Lj3C793G9' => 'lonja', 'Lj4g0012960' => 'lja', 'Lj5g0021252' => 'lja', 'Lj5g0021484' => 'lja', 'Lj5g0024528' => 'lja', 'Lj6A399T12' => 'lonja', 'Lj6A656G65' => 'lonja', 'Lsat_1_v5_gn_3_125500' => 'lsa', 'Lsat_1_v5_gn_3_125540' => 'lsa', 'Lsat_1_v5_gn_5_72701' => 'lsa', 'Lsat_1_v5_gn_8_91560' => 'lsa', 'Lsat_1_v5_gn_9_9640' => 'lsa', 'Manes.01G200600' => 'mes', 'Manes.01G200700' => 'mes', 'Manes.03G168900' => 'mes', 'Manes.03G169000' => 'mes', 'Manes.05G085801' => 'mes', 'Manes.05G086200' => 'mes', 'Manes.15G036700' => 'mes', 'Manes.15G036900' => 'mes', 'Mapoly0004s0172' => 'mpo', 'Mapoly0023s0001' => 'mpo', 'Mapoly0142s0012' => 'mpo', 'MBI01_g32854_MAGBIO' => 'mbi', 'MBI11_g24427_MAGBIO' => 'mbi', 'MBI11_g47319_MAGBIO' => 'mbi', 'MCO01G433' => 'mco', 'MD00G1187800' => 'mdo', 'MD04G1226500' => 'mdo', 'MD05G1203900' => 'mdo', 'MD10G1191100' => 'mdo', 'MD12G1243500' => 'mdo', 'MD13G1207000' => 'mdo', 'MD13G1207100' => 'mdo', 'MD16G1208600' => 'mdo', 'Medtr1g050352' => 'mtr', 'Medtr1g070385' => 'mtr', 'Medtr1g070450' => 'mtr', 'Medtr1g075200' => 'mtr', 'Medtr1g075250' => 'mtr', 'Medtr1g075260' => 'mtr', 'Medtr1g475250' => 'mtr', 'Medtr4g075450' => 'mtr', 'Medtr7g096300' => 'mtr', 'Medtr8g105110' => 'mtr', 'MELO3C006470.2' => 'cme', 'MELO3C006471.2' => 'cme', 'MELO3C020772.2' => 'cme', 'MELO3C026780.2' => 'cme', 'MELO3C026781.2' => 'cme', 'Migut.D00390' => 'egut', 'Migut.G00435' => 'egut', 'Migut.G00436' => 'egut', 'Migut.G00718' => 'egut', 'MSTRG.21891' => 'ama', 'MSTRG.26910' => 'ama', 'MSTRG.4099' => 'ama', 'MSTRG.9925' => 'ama', 'Nitab4.5_0000165g0010' => 'nta', 'Nitab4.5_0000209g0180' => 'nta', 'Nitab4.5_0000244g0440' => 'nta', 'Nitab4.5_0000525g0220' => 'nta', 'Nitab4.5_0001597g0020' => 'nta', 'Nitab4.5_0001878g0040' => 'nta', 'Nitab4.5_0001878g0060' => 'nta', 'Nitab4.5_0002838g0100' => 'nta', 'Nitab4.5_0002838g0120' => 'nta', 'Nitab4.5_0004798g0030' => 'nta', 'Nitab4.5_0005420g0010' => 'nta', 'Nitab4.5_0005507g0010' => 'nta', 'Nitab4.5_0005574g0020' => 'nta', 'Nitab4.5_0005838g0010' => 'nta', 'Nitab4.5_0010580g0020' => 'nta', 'Nn1g02599' => 'nnu', 'Nn1g02608' => 'nnu', 'Nn3g17742' => 'nnu', 'Nn3g19534' => 'nnu', 'Nn3g19535' => 'nnu', 'Oeu008790.1' => 'oeu', 'Oeu008792.1' => 'oeu', 'Oeu032590.1' => 'oeu', 'Oeu035349.1' => 'oeu', 'Oeu049791.1' => 'oeu', 'Os01g0774500' => 'osa', 'Os03g0628800' => 'osa', 'Os03g0798600' => 'osa', 'Os05g0508800' => 'osa', 'Peaxi162Scf00036g02018' => 'pax', 'Peaxi162Scf00578g00032' => 'pax', 'Peaxi162Scf00578g00317' => 'pax', 'Peaxi162Scf00785g00114' => 'pax', 'Peaxi162Scf00813g00119' => 'pax', 'Peaxi162Scf00906g00227' => 'pax', 'PGR004G0875' => 'pgr', 'PGR004G2424' => 'pgr', 'PGR031G1239' => 'pgr', 'PGR031G2474' => 'pgr', 'PGR044G0423' => 'pgr', 'PGSC0003DMG400001128' => 'stu', 'PGSC0003DMG400007336' => 'stu', 'PGSC0003DMG400016318' => 'stu', 'PGSC0003DMG400016319' => 'stu', 'PGSC0003DMG400018074' => 'stu', 'Phvul.001G157700' => 'pvu', 'Phvul.002G148550' => 'pvu', 'Phvul.002G320200' => 'pvu', 'Phvul.003G089200' => 'pvu', 'Phvul.007G126000' => 'pvu', 'Phvul.007G126100' => 'pvu', 'Phvul.007G178000' => 'pvu', 'Phvul.007G178200' => 'pvu', 'Potri.002G043000' => 'ptr', 'Potri.002G043200' => 'ptr', 'Potri.003G123750' => 'ptr', 'Potri.005G055401' => 'ptr', 'Potri.005G219700' => 'ptr', 'Potri.005G220000' => 'ptr', 'Potri.008G161901' => 'ptr', 'Potri.008G162000' => 'ptr', 'Potri.008G162400' => 'ptr', 'Potri.010G076900' => 'ptr', 'Pp3c12_9180' => 'ppa', 'Pp3c13_19770' => 'ppa', 'Pp3c14_22950' => 'ppa', 'Pp3c16_12160' => 'ppa', 'Pp3c27_7820' => 'ppa', 'Pp3c2_3490' => 'ppa', 'Pp3c3_23700' => 'ppa', 'Pp3c3_36520' => 'ppa', 'Pp3c4_15250' => 'ppa', 'PRCOL_00007002' => 'pco', 'Prupe.1G030600' => 'ppe', 'Prupe.1G030700' => 'ppe', 'Prupe.6G345200' => 'ppe', 'Prupe.8G230300' => 'ppe', 'Prupe.8G230500' => 'ppe', 'Psat3g059600' => 'psa', 'Psat5g200920' => 'psa', 'Psat6g056440' => 'psa', 'Psat6g057360' => 'psa', 'Psat6g134120' => 'psa', 'Psat6g134160' => 'psa', 'Psat7g008640' => 'psa', 'Psat7g185240' => 'psa', 'PSO017G1330' => 'pso', 'PSO063G6097' => 'pso', 'PSO170G0835' => 'pso', 'PSO170G2499' => 'pso', 'PSO210G5058' => 'pso', 'PSO210G6154' => 'pso', 'PSO585G0031' => 'pso', 'PSO832G0264' => 'pso', 'PSO832G4288' => 'pso', 'QL03p027355' => 'qlo', 'QL03p027430' => 'qlo', 'QL04p081380' => 'qlo', 'QL06p015642' => 'qlo', 'QL06p015650' => 'qlo', 'QL06p015686' => 'qlo', 'QL12p042927' => 'qlo', 'QL93p1863_0035' => 'qlo', 'RcHm_v2.0_Chr3g0450581' => 'rch', 'RcHm_v2.0_Chr4g0390371' => 'rch', 'RcHm_v2.0_Chr4g0390381' => 'rch', 'RcHm_v2.0_Chr4g0390491' => 'rch', 'RcHm_v2.0_Chr4g0390501' => 'rch', 'RcHm_v2.0_Chr6g0289231' => 'rch', 'Rhsim04G0190400' => 'rsi', 'Rhsim04G0190500' => 'rsi', 'Rhsim04G0190600' => 'rsi', 'Rhsim13G0031400' => 'rsi', 'Rhsim13G0165600' => 'rsi', 'RhsimUnG0114600' => 'rsi', 'RhsimUnG0114700' => 'rsi', 'Sabra02G0034800' => 'sbr', 'Sabra02G0035100' => 'sbr', 'Sabra05G0168600' => 'sbr', 'Sabra05G0168800' => 'sbr', 'Sabra08G0123700' => 'sbr', 'Sabra10G0031900' => 'sbr', 'Sabra13G0039000' => 'sbr', 'SalBow2G0782' => 'sbo', 'SalBow2G1403' => 'sbo', 'SalBow4G0074' => 'sbo', 'SalBow4G2635' => 'sbo', 'SalBow5G3010' => 'sbo', 'Sc05g0000870' => 'sci', 'Sc05g0000890' => 'sci', 'Sc13g0005000' => 'sci', 'Sc13g0005030' => 'sci', 'Sc19g0003790' => 'sci', 'Sc19g0003800' => 'sci', 'Sed0003467' => 'sed', 'Sed0009355' => 'sed', 'Sed0009894' => 'sed', 'Sed0011972' => 'sed', 'Sed0021483' => 'sed', 'Sed0021750' => 'sed', 'Sed0026279' => 'sed', 'SEGI_05312' => 'sgi', 'SEGI_10112' => 'sgi', 'SEGI_15835' => 'sgi', 'SEGI_30386' => 'sgi', 'SEGI_34122' => 'sgi', 'SEGI_35063' => 'sgi', 'SGA_v2.0_scaffold101G29794' => 'sas', 'SGA_v2.0_scaffold1G00573' => 'sas', 'SGA_v2.0_scaffold79G25637' => 'sas', 'SGA_v2.0_scaffold88G27283' => 'sas', 'SGA_v2.0_scaffold88G27285' => 'sas', 'SGA_v2.0_scaffold88G27331' => 'sas', 'SHI09937' => 'shi', 'SMO119G0302' => 'smo', 'SMO137G0231' => 'smo', 'SMO367G1151' => 'smo', 'Solyc02g082000.3' => 'sly', 'Solyc06g031670.3' => 'sly', 'Solyc06g053810.3' => 'sly', 'Solyc07g025457.1' => 'sly', 'Solyc08g059740.1' => 'sly', 'Solyc08g059750.3' => 'sly', 'Solyc09g083370.3' => 'sly', 'Solyc12g038950.3' => 'sly', 'Sopen02g026630' => 'spe', 'Sopen06g018930' => 'spe', 'Sopen06g018940' => 'spe', 'Sopen08g009460' => 'spe', 'Sopen09g032290' => 'spe', 'Sp1g03080' => 'spa', 'Sp1g03090' => 'spa', 'Sp1g05480' => 'spa', 'Sp2g07860' => 'spa', 'Sp2g08430' => 'spa', 'Sp2g08440' => 'spa', 'Sp2g26200' => 'spa', 'Sp4g13170' => 'spa', 'Sp6g33840' => 'spa', 'SpUn1204_0010' => 'spa', 'TAR365G0908' => 'tar', 'TAR381G1270' => 'tar', 'TAR381G1651' => 'tar', 'TAR625G1131' => 'tar', 'TAR633G0962' => 'tar', 'TAR633G1729' => 'tar', 'TAR633G1864' => 'tar', 'TAR636G0221' => 'tar', 'TAR636G0314' => 'tar', 'TAR636G3202' => 'tar', 'THA.LOC104800805' => 'tha', 'THA.LOC104801096' => 'tha', 'THA.LOC104801555' => 'tha', 'THA.LOC104808491' => 'tha', 'THA.LOC104808595' => 'tha', 'THA.LOC104815985' => 'tha', 'THA.LOC104822250' => 'tha', 'THA.LOC104826071' => 'tha', 'Thecc.01G265200' => 'tca', 'Thecc.01G265300' => 'tca', 'Thecc.01G265700' => 'tca', 'Thecc.03G109100' => 'tca', 'Thecc.04G245900' => 'tca', 'Thecc.04G246000' => 'tca', 'Thhalv10003334m.g' => 'esa', 'Thhalv10005508m.g' => 'esa', 'Thhalv10005643m.g' => 'esa', 'Thhalv10007316m.g' => 'esa', 'Thhalv10009006m.g' => 'esa', 'Thhalv10009309m.g' => 'esa', 'Thhalv10014917m.g' => 'esa', 'Thhalv10014919m.g' => 'esa', 'Thhalv10015393m.g' => 'esa', 'Thhalv10016515m.g' => 'esa', 'Thhalv10029242m.g' => 'esa', 'TPR.G16654' => 'tpr', 'TPR.G20589' => 'tpr', 'TPR.G23029' => 'tpr', 'TPR.G27731' => 'tpr', 'TPR.G28889' => 'tpr', 'TPR.G28899' => 'tpr', 'TPR.G30846' => 'tpr', 'TPR.G5452' => 'tpr', 'TPR.G5713' => 'tpr', 'TPR.G9046' => 'tpr', 'TPR.G9061' => 'tpr', 'TWI09G1075' => 'twi', 'TWI12G0806' => 'twi', 'TWI18G0108' => 'twi', 'TWI53G1361' => 'twi', 'TWI73G0185' => 'twi', 'TWI73G0427' => 'twi', 'unitig_37.g12001' => 'ugi', 'unitig_747.g21660' => 'ugi', 'unitig_748.g7232' => 'ugi', 'unitig_748.g7315' => 'ugi', 'unitig_85.g27262' => 'ugi', 'unitig_92.g28220' => 'ugi', 'vmacro02632' => 'vma', 'vmacro08410' => 'vma', 'vmacro08411' => 'vma', 'vmacro15407' => 'vma', 'VMungo0251G3619' => 'vmu', 'VMungo0720G1204' => 'vmu', 'VMungo0720G1918' => 'vmu', 'VMungo0720G2387' => 'vmu', 'VMungo0720G2961' => 'vmu', 'VMungo1215G2154' => 'vmu', 'VMungo1383G2411' => 'vmu', 'Zm00001eb051130' => 'zma', 'Zm00001eb116830' => 'zma', 'Zm00001eb116850' => 'zma', 'Zm00001eb151740' => 'zma', 'Zm00001eb292360' => 'zma', 'Zm00001eb301640' => 'zma' ) $gf_id = 'HOM05D000856' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000856' ) $data_identifier = 'HOM05D000856' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 13, 'ath' => (int) 10, 'atr' => (int) 1, 'acertr' => (int) 8, 'cqu' => (int) 6, 'bca' => (int) 21, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 11, 'car' => (int) 9, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 8, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 5, 'fan' => (int) 16, 'fve' => (int) 6, 'gma' => (int) 11, 'ghi' => (int) 19, 'gra' => (int) 9, 'vvi' => (int) 7, 'han' => (int) 17, 'cav' => (int) 5, 'hma' => (int) 2, 'vpl' => (int) 2, 'sun' => (int) 7, 'lal' => (int) 9, 'lja' => (int) 5, 'lonja' => (int) 9, 'lsa' => (int) 5, 'mes' => (int) 8, 'mpo' => (int) 3, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 10, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 15, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 9, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 9, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 6, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 5, 'spa' => (int) 10, 'tar' => (int) 10, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 11, 'tpr' => (int) 11, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 4, 'vmu' => (int) 7, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb301640' $species_info = array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ) $local_species = 'cbr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000856', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p00010' => 'bna', 'A03p04160' => 'bna', 'A03p17160' => 'bna', 'A04p23370' => 'bna', 'A05p14860' => 'bna', 'A08p37020' => 'bna', 'A09p08050' => 'bna', 'A09p66800' => 'bna', 'A09p67940' => 'bna', 'A10p02680' => 'bna', 'A10p05320' => 'bna', 'Aa31LG1G20560' => 'aar', 'Aa31LG1G20610' => 'aar', 'Aa31LG1G7810' => 'aar', 'Aa31LG5G3590' => 'aar', 'Aa31LG5G6140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3819' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4683' => 'aag', 'Actinidia04480' => 'ach', 'Actinidia05466' => 'ach', 'Actinidia08445' => 'ach', 'Actinidia21170' => 'ach', 'Actinidia24812' => 'ach', 'Actinidia24951' => 'ach', 'Actinidia40088' => 'ach', 'Ah.02g111660' => 'amhyb', 'Ah.11g048900' => 'amhyb', 'Ah.11g049910' => 'amhyb', 'AL1G13870' => 'aly', 'AL1G13880' => 'aly', 'AL1G16760' => 'aly', 'AL390U10020' => 'aly', 'AL4G25520' => 'aly', 'AL6G19890' => 'aly', 'AL6G19900' => 'aly', 'AL6G19910' => 'aly', 'AL8G40100' => 'aly', 'Aqoxy2G03562' => 'aox', 'Aqoxy5G00316' => 'aox', 'Aqoxy5G00926' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1628KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1H403S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2FU6SJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.882I6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8YRY2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YN1SN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AF70II' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZA8L1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F916KL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHRD8H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KTZ8QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S22EMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8M29T' => 'arhy', 'AT1G04270' => 'ath', 'AT1G04280' => 'ath', 'AT1G06750' => 'ath', 'AT1G33850' => 'ath', 'AT2G30630' => 'ath', 'AT5G09490' => 'ath', 'AT5G09500' => 'ath', 'AT5G09510' => 'ath', 'AT5G43640' => 'ath', 'AT5G63070' => 'ath', 'ATR0605G315' => 'atr', 'Atru.chr11.175' => 'acertr', 'Atru.chr11.653' => 'acertr', 'Atru.chr3.1616' => 'acertr', 'Atru.chr4.2230' => 'acertr', 'Atru.chr4.2232' => 'acertr', 'Atru.chr5.1598' => 'acertr', 'Atru.chr5.1600' => 'acertr', 'Atru.chr5.2188' => 'acertr', 'AUR62008326' => 'cqu', 'AUR62011922' => 'cqu', 'AUR62011924' => 'cqu', 'AUR62021771' => 'cqu', 'AUR62032237' => 'cqu', 'AUR62032240' => 'cqu', 'BcaB01g05572' => 'bca', 'BcaB02g10337' => 'bca', 'BcaB04g19944' => 'bca', 'BcaB05g21548' => 'bca', 'BcaB05g21549' => 'bca', 'BcaB05g23227' => 'bca', 'BcaB06g26256' => 'bca', 'BcaB06g26257' => 'bca', 'BcaB06g28379' => 'bca', 'BcaC02g11159' => 'bca', 'BcaC03g13258' => 'bca', 'BcaC03g13259' => 'bca', 'BcaC05g24456' => 'bca', 'BcaC05g24457' => 'bca', 'BcaC07g36922' => 'bca', 'BcaC07g36923' => 'bca', 'BcaC07g42050' => 'bca', 'BcaC07g42176' => 'bca', 'BcaC07g42195' => 'bca', 'BcaC07g42196' => 'bca', 'BcaNung06674' => 'bca', 'BolC2t06351H' => 'bol', 'BolC2t06352H' => 'bol', 'BolC3t12993H' => 'bol', 'BolC4t23525H' => 'bol', 'BolC4t27475H' => 'bol', 'BolC5t29025H' => 'bol', 'BolC5t29026H' => 'bol', 'BolC8t46898H' => 'bol', 'BolC8t46899H' => 'bol', 'BolC8t52630H' => 'bol', 'BolC8t52765H' => 'bol', 'BolC9t53824H' => 'bol', 'BraA03t09760Z' => 'bra', 'BraA03t10990Z' => 'bra', 'BraA05t20413Z' => 'bra', 'BraA08t35602Z' => 'bra', 'BraA09t36458Z' => 'bra', 'BraA09t42018Z' => 'bra', 'BraA09t42129Z' => 'bra', 'BraA10t42536Z' => 'bra', 'BraA10t42537Z' => 'bra', 'C01p10690' => 'bna', 'C02p03890' => 'bna', 'C02p03900' => 'bna', 'C03p04620' => 'bna', 'C04p19870' => 'bna', 'C04p59670' => 'bna', 'C05p02460' => 'bna', 'C05p02470' => 'bna', 'C08p00980' => 'bna', 'C08p00990' => 'bna', 'C08p51030' => 'bna', 'C08p52360' => 'bna', 'C09p09120' => 'bna', 'CAN.G19.15' => 'can', 'CAN.G251.10' => 'can', 'CAN.G251.9' => 'can', 'CAN.G398.24' => 'can', 'CAN.G410.32' => 'can', 'CAN.G881.2' => 'can', 'CANSAT01G3025' => 'cansat', 'CANSAT78G1211' => 'cansat', 'CANSAT78G1218' => 'cansat', 'CANSAT78G1521' => 'cansat', 'CANSAT78G1670' => 'cansat', 'CARHR003600' => 'chi', 'CARHR003610' => 'chi', 'CARHR006290' => 'chi', 'CARHR006430' => 'chi', 'CARHR124110' => 'chi', 'CARHR203870' => 'chi', 'CARHR203880' => 'chi', 'CARHR203890' => 'chi', 'CARHR276880' => 'chi', 'Carub.0001s0346' => 'cru', 'Carub.0001s0347' => 'cru', 'Carub.0001s0607' => 'cru', 'Carub.0003s2768' => 'cru', 'Carub.0003s2769' => 'cru', 'Carub.0004s1178' => 'cru', 'Carub.0006s0806' => 'cru', 'Carub.0006s0807' => 'cru', 'Carub.0006s0808' => 'cru', 'Carub.0008s0501' => 'cru', 'Carub.0008s2379' => 'cru', 'Ca_08655_v3' => 'car', 'Ca_08922_v3' => 'car', 'Ca_08923_v3' => 'car', 'Ca_09119_v3' => 'car', 'Ca_09703_v3' => 'car', 'Ca_09705_v3' => 'car', 'Ca_09835_v3' => 'car', 'Ca_26403_v3' => 'car', 'Ca_30719_v3' => 'car', 'CBR_g17958' => 'cbr', 'CBR_g40516' => 'cbr', 'Cc00_g05350' => 'ccan', 'Cc01_g18690' => 'ccan', 'Cc03_g04830' => 'ccan', 'Cc03_g04850' => 'ccan', 'CDE02G4469' => 'cde', 'CDE06G0883' => 'cde', 'CDE06G1295' => 'cde', 'CDE06G1390' => 'cde', 'CDE07G0584' => 'cde', 'CDE07G1084' => 'cde', 'CDE08G1259' => 'cde', 'Cfa002341' => 'cfa', 'Cfa024337' => 'cfa', 'Ciclev10004749m.g' => 'ccl', 'Ciclev10006127m.g' => 'ccl', 'Ciclev10019720m.g' => 'ccl', 'Ciclev10022652m.g' => 'ccl', 'CiPaw.01G190400' => 'cil', 'CiPaw.01G190500' => 'cil', 'CiPaw.02G116400' => 'cil', 'CiPaw.02G116500' => 'cil', 'CiPaw.04G183000' => 'cil', 'CiPaw.04G183300' => 'cil', 'ClCG05G004610' => 'cla', 'ClCG05G004620' => 'cla', 'ClCG06G006730' => 'cla', 'ClCG06G006740' => 'cla', 'ClCG11G003690' => 'cla', 'COL.COLO4_08276' => 'col', 'COL.COLO4_08277' => 'col', 'COL.COLO4_15787' => 'col', 'COL.COLO4_15789' => 'col', 'Cpa.g.c44815' => 'cpa', 'Cpa.g.sc52.144' => 'cpa', 'Cpa.g.sc58.46' => 'cpa', 'Cpa.g.sc58.47' => 'cpa', 'Cre08.g360900' => 'cre', 'CsaV3_2G013030' => 'csa', 'CsaV3_2G013050' => 'csa', 'CsaV3_2G015620' => 'csa', 'CsaV3_3G012590' => 'csa', 'CsaV3_3G012600' => 'csa', 'CSS0001641' => 'camsi', 'CSS0008310' => 'camsi', 'CSS0013011' => 'camsi', 'CSS0017147' => 'camsi', 'CSS0022970' => 'camsi', 'CSS0025655' => 'camsi', 'CSS0028665' => 'camsi', 'CSS0029117' => 'camsi', 'CSS0032024' => 'camsi', 'CSS0039681' => 'camsi', 'CSS0046516' => 'camsi', 'CSS0050307' => 'camsi', 'DCAR_005871' => 'dca', 'DCAR_007342' => 'dca', 'DCAR_024228' => 'dca', 'DCAR_027277' => 'dca', 'DCAR_030718' => 'dca', 'Dinv20287' => 'din', 'Dinv22461' => 'din', 'Dinv22464' => 'din', 'Dinv29912' => 'din', 'Dinv29913' => 'din', 'Dinv34580' => 'din', 'Dinv34582' => 'din', 'Dinv44632' => 'din', 'Duzib052G0266' => 'dzi', 'Duzib133G0907' => 'dzi', 'Duzib133G1034' => 'dzi', 'Duzib138G0207' => 'dzi', 'Duzib138G0491' => 'dzi', 'Duzib151G0812' => 'dzi', 'Duzib151G1166' => 'dzi', 'Duzib168G0192' => 'dzi', 'Duzib211G0077' => 'dzi', 'Duzib212G0429' => 'dzi', 'Duzib212G0472' => 'dzi', 'ECA233G2617' => 'eca', 'ECA236G4188' => 'eca', 'ECA240G0936' => 'eca', 'ECA240G1129' => 'eca', 'ECA247G0623' => 'eca', 'EL10Ac5g10451' => 'bvu', 'EL10Ac5g10453' => 'bvu', 'EL10Ac5g10894' => 'bvu', 'Eucgr.H00192' => 'egr', 'Eucgr.H00193' => 'egr', 'Eucgr.H00194' => 'egr', 'Eucgr.J01562' => 'egr', 'Eucgr.K03301' => 'egr', 'FAN02G0632' => 'fan', 'FAN05G5378' => 'fan', 'FAN09G3247' => 'fan', 'FAN12G0435' => 'fan', 'FAN12G2426' => 'fan', 'FAN14G1707' => 'fan', 'FAN14G4725' => 'fan', 'FAN15G2071' => 'fan', 'FAN17G3065' => 'fan', 'FAN19G1376' => 'fan', 'FAN20G0354' => 'fan', 'FAN20G2429' => 'fan', 'FAN20G2658' => 'fan', 'FAN24G2343' => 'fan', 'FAN27G2362' => 'fan', 'FAN28G1765' => 'fan', 'FvH4_1g16020' => 'fve', 'FvH4_2g04890' => 'fve', 'FvH4_2g22270' => 'fve', 'FvH4_4g02630' => 'fve', 'FvH4_4g02640' => 'fve', 'FvH4_6g02650' => 'fve', 'Glyma.02G140600' => 'gma', 'Glyma.03G159900' => 'gma', 'Glyma.05G234800' => 'gma', 'Glyma.07G269600' => 'gma', 'Glyma.08G042300' => 'gma', 'Glyma.10G033500' => 'gma', 'Glyma.10G185200' => 'gma', 'Glyma.17G004300' => 'gma', 'Glyma.19G161900' => 'gma', 'Glyma.20G205100' => 'gma', 'Glyma.20G205200' => 'gma', 'Gohir.A01G139101' => 'ghi', 'Gohir.A02G035600' => 'ghi', 'Gohir.A02G117901' => 'ghi', 'Gohir.A07G210100' => 'ghi', 'Gohir.A07G210200' => 'ghi', 'Gohir.A08G061100' => 'ghi', 'Gohir.A09G223000' => 'ghi', 'Gohir.A09G223100' => 'ghi', 'Gohir.A10G113900' => 'ghi', 'Gohir.A10G114000' => 'ghi', 'Gohir.D02G042300' => 'ghi', 'Gohir.D07G216100' => 'ghi', 'Gohir.D07G216200' => 'ghi', 'Gohir.D08G070400' => 'ghi', 'Gohir.D09G225000' => 'ghi', 'Gohir.D09G225100' => 'ghi', 'Gohir.D10G152300' => 'ghi', 'Gohir.D10G153200' => 'ghi', 'Gohir.D11G133701' => 'ghi', 'Gorai.004G074100' => 'gra', 'Gorai.005G046800' => 'gra', 'Gorai.006G246500' => 'gra', 'Gorai.006G246600' => 'gra', 'Gorai.007G142900' => 'gra', 'Gorai.011G171000' => 'gra', 'Gorai.011G171100' => 'gra', 'Gorai.013G104300' => 'gra', 'Gorai.013G104400' => 'gra', 'GSVIVG01000754001' => 'vvi', 'GSVIVG01000756001' => 'vvi', 'GSVIVG01010903001' => 'vvi', 'GSVIVG01017623001' => 'vvi', 'GSVIVG01018113001' => 'vvi', 'GSVIVG01018116001' => 'vvi', 'GSVIVG01018118001' => 'vvi', 'HanXRQChr03g0076211' => 'han', 'HanXRQChr03g0092431' => 'han', 'HanXRQChr03g0092441' => 'han', 'HanXRQChr03g0092591' => 'han', 'HanXRQChr03g0092671' => 'han', 'HanXRQChr03g0092681' => 'han', 'HanXRQChr03g0092691' => 'han', 'HanXRQChr03g0092701' => 'han', 'HanXRQChr03g0092721' => 'han', 'HanXRQChr03g0092731' => 'han', 'HanXRQChr04g0113681' => 'han', 'HanXRQChr10g0281371' => 'han', 'HanXRQChr11g0337141' => 'han', 'HanXRQChr13g0424521' => 'han', 'HanXRQChr13g0424531' => 'han', 'HanXRQChr13g0424541' => 'han', 'HanXRQChr16g0498221' => 'han', 'Haze_04377' => 'cav', 'Haze_11298' => 'cav', 'Haze_24547' => 'cav', 'Haze_24550' => 'cav', 'Haze_26587' => 'cav', 'Hma1.2p1_0650F.1_g195410' => 'hma', 'Hma1.2p1_0893F.1_g233470' => 'hma', 'HPP92_006508' => 'vpl', 'HPP92_024780' => 'vpl', 'Hund02688' => 'sun', 'Hund09380' => 'sun', 'Hund09381' => 'sun', 'Hund09832' => 'sun', 'Hund09833' => 'sun', 'Hund11351' => 'sun', 'Hund11513' => 'sun', 'Lalb_Chr06g0162591' => 'lal', 'Lalb_Chr06g0162601' => 'lal', 'Lalb_Chr06g0169321' => 'lal', 'Lalb_Chr09g0330951' => 'lal', 'Lalb_Chr16g0387631' => 'lal', 'Lalb_Chr21g0306241' => 'lal', 'Lalb_Chr25g0290051' => 'lal', 'Lalb_Chr25g0290061' => 'lal', 'Lalb_Chr25g0290071' => 'lal', 'Lj1g0003876' => 'lja', 'Lj1P1207T36' => 'lonja', 'Lj2C1156G12' => 'lonja', 'Lj3A793G39' => 'lonja', 'Lj3C580G2' => 'lonja', 'Lj3C780G2' => 'lonja', 'Lj3C780T4' => 'lonja', 'Lj3C793G9' => 'lonja', 'Lj4g0012960' => 'lja', 'Lj5g0021252' => 'lja', 'Lj5g0021484' => 'lja', 'Lj5g0024528' => 'lja', 'Lj6A399T12' => 'lonja', 'Lj6A656G65' => 'lonja', 'Lsat_1_v5_gn_3_125500' => 'lsa', 'Lsat_1_v5_gn_3_125540' => 'lsa', 'Lsat_1_v5_gn_5_72701' => 'lsa', 'Lsat_1_v5_gn_8_91560' => 'lsa', 'Lsat_1_v5_gn_9_9640' => 'lsa', 'Manes.01G200600' => 'mes', 'Manes.01G200700' => 'mes', 'Manes.03G168900' => 'mes', 'Manes.03G169000' => 'mes', 'Manes.05G085801' => 'mes', 'Manes.05G086200' => 'mes', 'Manes.15G036700' => 'mes', 'Manes.15G036900' => 'mes', 'Mapoly0004s0172' => 'mpo', 'Mapoly0023s0001' => 'mpo', 'Mapoly0142s0012' => 'mpo', 'MBI01_g32854_MAGBIO' => 'mbi', 'MBI11_g24427_MAGBIO' => 'mbi', 'MBI11_g47319_MAGBIO' => 'mbi', 'MCO01G433' => 'mco', 'MD00G1187800' => 'mdo', 'MD04G1226500' => 'mdo', 'MD05G1203900' => 'mdo', 'MD10G1191100' => 'mdo', 'MD12G1243500' => 'mdo', 'MD13G1207000' => 'mdo', 'MD13G1207100' => 'mdo', 'MD16G1208600' => 'mdo', 'Medtr1g050352' => 'mtr', 'Medtr1g070385' => 'mtr', 'Medtr1g070450' => 'mtr', 'Medtr1g075200' => 'mtr', 'Medtr1g075250' => 'mtr', 'Medtr1g075260' => 'mtr', 'Medtr1g475250' => 'mtr', 'Medtr4g075450' => 'mtr', 'Medtr7g096300' => 'mtr', 'Medtr8g105110' => 'mtr', 'MELO3C006470.2' => 'cme', 'MELO3C006471.2' => 'cme', 'MELO3C020772.2' => 'cme', 'MELO3C026780.2' => 'cme', 'MELO3C026781.2' => 'cme', 'Migut.D00390' => 'egut', 'Migut.G00435' => 'egut', 'Migut.G00436' => 'egut', 'Migut.G00718' => 'egut', 'MSTRG.21891' => 'ama', 'MSTRG.26910' => 'ama', 'MSTRG.4099' => 'ama', 'MSTRG.9925' => 'ama', 'Nitab4.5_0000165g0010' => 'nta', 'Nitab4.5_0000209g0180' => 'nta', 'Nitab4.5_0000244g0440' => 'nta', 'Nitab4.5_0000525g0220' => 'nta', 'Nitab4.5_0001597g0020' => 'nta', 'Nitab4.5_0001878g0040' => 'nta', 'Nitab4.5_0001878g0060' => 'nta', 'Nitab4.5_0002838g0100' => 'nta', 'Nitab4.5_0002838g0120' => 'nta', 'Nitab4.5_0004798g0030' => 'nta', 'Nitab4.5_0005420g0010' => 'nta', 'Nitab4.5_0005507g0010' => 'nta', 'Nitab4.5_0005574g0020' => 'nta', 'Nitab4.5_0005838g0010' => 'nta', 'Nitab4.5_0010580g0020' => 'nta', 'Nn1g02599' => 'nnu', 'Nn1g02608' => 'nnu', 'Nn3g17742' => 'nnu', 'Nn3g19534' => 'nnu', 'Nn3g19535' => 'nnu', 'Oeu008790.1' => 'oeu', 'Oeu008792.1' => 'oeu', 'Oeu032590.1' => 'oeu', 'Oeu035349.1' => 'oeu', 'Oeu049791.1' => 'oeu', 'Os01g0774500' => 'osa', 'Os03g0628800' => 'osa', 'Os03g0798600' => 'osa', 'Os05g0508800' => 'osa', 'Peaxi162Scf00036g02018' => 'pax', 'Peaxi162Scf00578g00032' => 'pax', 'Peaxi162Scf00578g00317' => 'pax', 'Peaxi162Scf00785g00114' => 'pax', 'Peaxi162Scf00813g00119' => 'pax', 'Peaxi162Scf00906g00227' => 'pax', 'PGR004G0875' => 'pgr', 'PGR004G2424' => 'pgr', 'PGR031G1239' => 'pgr', 'PGR031G2474' => 'pgr', 'PGR044G0423' => 'pgr', 'PGSC0003DMG400001128' => 'stu', 'PGSC0003DMG400007336' => 'stu', 'PGSC0003DMG400016318' => 'stu', 'PGSC0003DMG400016319' => 'stu', 'PGSC0003DMG400018074' => 'stu', 'Phvul.001G157700' => 'pvu', 'Phvul.002G148550' => 'pvu', 'Phvul.002G320200' => 'pvu', 'Phvul.003G089200' => 'pvu', 'Phvul.007G126000' => 'pvu', 'Phvul.007G126100' => 'pvu', 'Phvul.007G178000' => 'pvu', 'Phvul.007G178200' => 'pvu', 'Potri.002G043000' => 'ptr', 'Potri.002G043200' => 'ptr', 'Potri.003G123750' => 'ptr', 'Potri.005G055401' => 'ptr', 'Potri.005G219700' => 'ptr', 'Potri.005G220000' => 'ptr', 'Potri.008G161901' => 'ptr', 'Potri.008G162000' => 'ptr', 'Potri.008G162400' => 'ptr', 'Potri.010G076900' => 'ptr', 'Pp3c12_9180' => 'ppa', 'Pp3c13_19770' => 'ppa', 'Pp3c14_22950' => 'ppa', 'Pp3c16_12160' => 'ppa', 'Pp3c27_7820' => 'ppa', 'Pp3c2_3490' => 'ppa', 'Pp3c3_23700' => 'ppa', 'Pp3c3_36520' => 'ppa', 'Pp3c4_15250' => 'ppa', 'PRCOL_00007002' => 'pco', 'Prupe.1G030600' => 'ppe', 'Prupe.1G030700' => 'ppe', 'Prupe.6G345200' => 'ppe', 'Prupe.8G230300' => 'ppe', 'Prupe.8G230500' => 'ppe', 'Psat3g059600' => 'psa', 'Psat5g200920' => 'psa', 'Psat6g056440' => 'psa', 'Psat6g057360' => 'psa', 'Psat6g134120' => 'psa', 'Psat6g134160' => 'psa', 'Psat7g008640' => 'psa', 'Psat7g185240' => 'psa', 'PSO017G1330' => 'pso', 'PSO063G6097' => 'pso', 'PSO170G0835' => 'pso', 'PSO170G2499' => 'pso', 'PSO210G5058' => 'pso', 'PSO210G6154' => 'pso', 'PSO585G0031' => 'pso', 'PSO832G0264' => 'pso', 'PSO832G4288' => 'pso', 'QL03p027355' => 'qlo', 'QL03p027430' => 'qlo', 'QL04p081380' => 'qlo', 'QL06p015642' => 'qlo', 'QL06p015650' => 'qlo', 'QL06p015686' => 'qlo', 'QL12p042927' => 'qlo', 'QL93p1863_0035' => 'qlo', 'RcHm_v2.0_Chr3g0450581' => 'rch', 'RcHm_v2.0_Chr4g0390371' => 'rch', 'RcHm_v2.0_Chr4g0390381' => 'rch', 'RcHm_v2.0_Chr4g0390491' => 'rch', 'RcHm_v2.0_Chr4g0390501' => 'rch', 'RcHm_v2.0_Chr6g0289231' => 'rch', 'Rhsim04G0190400' => 'rsi', 'Rhsim04G0190500' => 'rsi', 'Rhsim04G0190600' => 'rsi', 'Rhsim13G0031400' => 'rsi', 'Rhsim13G0165600' => 'rsi', 'RhsimUnG0114600' => 'rsi', 'RhsimUnG0114700' => 'rsi', 'Sabra02G0034800' => 'sbr', 'Sabra02G0035100' => 'sbr', 'Sabra05G0168600' => 'sbr', 'Sabra05G0168800' => 'sbr', 'Sabra08G0123700' => 'sbr', 'Sabra10G0031900' => 'sbr', 'Sabra13G0039000' => 'sbr', 'SalBow2G0782' => 'sbo', 'SalBow2G1403' => 'sbo', 'SalBow4G0074' => 'sbo', 'SalBow4G2635' => 'sbo', 'SalBow5G3010' => 'sbo', 'Sc05g0000870' => 'sci', 'Sc05g0000890' => 'sci', 'Sc13g0005000' => 'sci', 'Sc13g0005030' => 'sci', 'Sc19g0003790' => 'sci', 'Sc19g0003800' => 'sci', 'Sed0003467' => 'sed', 'Sed0009355' => 'sed', 'Sed0009894' => 'sed', 'Sed0011972' => 'sed', 'Sed0021483' => 'sed', 'Sed0021750' => 'sed', 'Sed0026279' => 'sed', 'SEGI_05312' => 'sgi', 'SEGI_10112' => 'sgi', 'SEGI_15835' => 'sgi', 'SEGI_30386' => 'sgi', 'SEGI_34122' => 'sgi', 'SEGI_35063' => 'sgi', 'SGA_v2.0_scaffold101G29794' => 'sas', 'SGA_v2.0_scaffold1G00573' => 'sas', 'SGA_v2.0_scaffold79G25637' => 'sas', 'SGA_v2.0_scaffold88G27283' => 'sas', 'SGA_v2.0_scaffold88G27285' => 'sas', 'SGA_v2.0_scaffold88G27331' => 'sas', 'SHI09937' => 'shi', 'SMO119G0302' => 'smo', 'SMO137G0231' => 'smo', 'SMO367G1151' => 'smo', 'Solyc02g082000.3' => 'sly', 'Solyc06g031670.3' => 'sly', 'Solyc06g053810.3' => 'sly', 'Solyc07g025457.1' => 'sly', 'Solyc08g059740.1' => 'sly', 'Solyc08g059750.3' => 'sly', 'Solyc09g083370.3' => 'sly', 'Solyc12g038950.3' => 'sly', 'Sopen02g026630' => 'spe', 'Sopen06g018930' => 'spe', 'Sopen06g018940' => 'spe', 'Sopen08g009460' => 'spe', 'Sopen09g032290' => 'spe', 'Sp1g03080' => 'spa', 'Sp1g03090' => 'spa', 'Sp1g05480' => 'spa', 'Sp2g07860' => 'spa', 'Sp2g08430' => 'spa', 'Sp2g08440' => 'spa', 'Sp2g26200' => 'spa', 'Sp4g13170' => 'spa', 'Sp6g33840' => 'spa', 'SpUn1204_0010' => 'spa', 'TAR365G0908' => 'tar', 'TAR381G1270' => 'tar', 'TAR381G1651' => 'tar', 'TAR625G1131' => 'tar', 'TAR633G0962' => 'tar', 'TAR633G1729' => 'tar', 'TAR633G1864' => 'tar', 'TAR636G0221' => 'tar', 'TAR636G0314' => 'tar', 'TAR636G3202' => 'tar', 'THA.LOC104800805' => 'tha', 'THA.LOC104801096' => 'tha', 'THA.LOC104801555' => 'tha', 'THA.LOC104808491' => 'tha', 'THA.LOC104808595' => 'tha', 'THA.LOC104815985' => 'tha', 'THA.LOC104822250' => 'tha', 'THA.LOC104826071' => 'tha', 'Thecc.01G265200' => 'tca', 'Thecc.01G265300' => 'tca', 'Thecc.01G265700' => 'tca', 'Thecc.03G109100' => 'tca', 'Thecc.04G245900' => 'tca', 'Thecc.04G246000' => 'tca', 'Thhalv10003334m.g' => 'esa', 'Thhalv10005508m.g' => 'esa', 'Thhalv10005643m.g' => 'esa', 'Thhalv10007316m.g' => 'esa', 'Thhalv10009006m.g' => 'esa', 'Thhalv10009309m.g' => 'esa', 'Thhalv10014917m.g' => 'esa', 'Thhalv10014919m.g' => 'esa', 'Thhalv10015393m.g' => 'esa', 'Thhalv10016515m.g' => 'esa', 'Thhalv10029242m.g' => 'esa', 'TPR.G16654' => 'tpr', 'TPR.G20589' => 'tpr', 'TPR.G23029' => 'tpr', 'TPR.G27731' => 'tpr', 'TPR.G28889' => 'tpr', 'TPR.G28899' => 'tpr', 'TPR.G30846' => 'tpr', 'TPR.G5452' => 'tpr', 'TPR.G5713' => 'tpr', 'TPR.G9046' => 'tpr', 'TPR.G9061' => 'tpr', 'TWI09G1075' => 'twi', 'TWI12G0806' => 'twi', 'TWI18G0108' => 'twi', 'TWI53G1361' => 'twi', 'TWI73G0185' => 'twi', 'TWI73G0427' => 'twi', 'unitig_37.g12001' => 'ugi', 'unitig_747.g21660' => 'ugi', 'unitig_748.g7232' => 'ugi', 'unitig_748.g7315' => 'ugi', 'unitig_85.g27262' => 'ugi', 'unitig_92.g28220' => 'ugi', 'vmacro02632' => 'vma', 'vmacro08410' => 'vma', 'vmacro08411' => 'vma', 'vmacro15407' => 'vma', 'VMungo0251G3619' => 'vmu', 'VMungo0720G1204' => 'vmu', 'VMungo0720G1918' => 'vmu', 'VMungo0720G2387' => 'vmu', 'VMungo0720G2961' => 'vmu', 'VMungo1215G2154' => 'vmu', 'VMungo1383G2411' => 'vmu', 'Zm00001eb051130' => 'zma', 'Zm00001eb116830' => 'zma', 'Zm00001eb116850' => 'zma', 'Zm00001eb151740' => 'zma', 'Zm00001eb292360' => 'zma', 'Zm00001eb301640' => 'zma' ), 'gf_id' => 'HOM05D000856', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000856' ), 'data_identifier' => 'HOM05D000856', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000856', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p00010' => 'bna', 'A03p04160' => 'bna', 'A03p17160' => 'bna', 'A04p23370' => 'bna', 'A05p14860' => 'bna', 'A08p37020' => 'bna', 'A09p08050' => 'bna', 'A09p66800' => 'bna', 'A09p67940' => 'bna', 'A10p02680' => 'bna', 'A10p05320' => 'bna', 'Aa31LG1G20560' => 'aar', 'Aa31LG1G20610' => 'aar', 'Aa31LG1G7810' => 'aar', 'Aa31LG5G3590' => 'aar', 'Aa31LG5G6140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3819' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4683' => 'aag', 'Actinidia04480' => 'ach', 'Actinidia05466' => 'ach', 'Actinidia08445' => 'ach', 'Actinidia21170' => 'ach', 'Actinidia24812' => 'ach', 'Actinidia24951' => 'ach', 'Actinidia40088' => 'ach', 'Ah.02g111660' => 'amhyb', 'Ah.11g048900' => 'amhyb', 'Ah.11g049910' => 'amhyb', 'AL1G13870' => 'aly', 'AL1G13880' => 'aly', 'AL1G16760' => 'aly', 'AL390U10020' => 'aly', 'AL4G25520' => 'aly', 'AL6G19890' => 'aly', 'AL6G19900' => 'aly', 'AL6G19910' => 'aly', 'AL8G40100' => 'aly', 'Aqoxy2G03562' => 'aox', 'Aqoxy5G00316' => 'aox', 'Aqoxy5G00926' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1628KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1H403S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2FU6SJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.882I6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8YRY2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YN1SN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AF70II' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZA8L1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F916KL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHRD8H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KTZ8QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S22EMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8M29T' => 'arhy', 'AT1G04270' => 'ath', 'AT1G04280' => 'ath', 'AT1G06750' => 'ath', 'AT1G33850' => 'ath', 'AT2G30630' => 'ath', 'AT5G09490' => 'ath', 'AT5G09500' => 'ath', 'AT5G09510' => 'ath', 'AT5G43640' => 'ath', 'AT5G63070' => 'ath', 'ATR0605G315' => 'atr', 'Atru.chr11.175' => 'acertr', 'Atru.chr11.653' => 'acertr', 'Atru.chr3.1616' => 'acertr', 'Atru.chr4.2230' => 'acertr', 'Atru.chr4.2232' => 'acertr', 'Atru.chr5.1598' => 'acertr', 'Atru.chr5.1600' => 'acertr', 'Atru.chr5.2188' => 'acertr', 'AUR62008326' => 'cqu', 'AUR62011922' => 'cqu', 'AUR62011924' => 'cqu', 'AUR62021771' => 'cqu', 'AUR62032237' => 'cqu', 'AUR62032240' => 'cqu', 'BcaB01g05572' => 'bca', 'BcaB02g10337' => 'bca', 'BcaB04g19944' => 'bca', 'BcaB05g21548' => 'bca', 'BcaB05g21549' => 'bca', 'BcaB05g23227' => 'bca', 'BcaB06g26256' => 'bca', 'BcaB06g26257' => 'bca', 'BcaB06g28379' => 'bca', 'BcaC02g11159' => 'bca', 'BcaC03g13258' => 'bca', 'BcaC03g13259' => 'bca', 'BcaC05g24456' => 'bca', 'BcaC05g24457' => 'bca', 'BcaC07g36922' => 'bca', 'BcaC07g36923' => 'bca', 'BcaC07g42050' => 'bca', 'BcaC07g42176' => 'bca', 'BcaC07g42195' => 'bca', 'BcaC07g42196' => 'bca', 'BcaNung06674' => 'bca', 'BolC2t06351H' => 'bol', 'BolC2t06352H' => 'bol', 'BolC3t12993H' => 'bol', 'BolC4t23525H' => 'bol', 'BolC4t27475H' => 'bol', 'BolC5t29025H' => 'bol', 'BolC5t29026H' => 'bol', 'BolC8t46898H' => 'bol', 'BolC8t46899H' => 'bol', 'BolC8t52630H' => 'bol', 'BolC8t52765H' => 'bol', 'BolC9t53824H' => 'bol', 'BraA03t09760Z' => 'bra', 'BraA03t10990Z' => 'bra', 'BraA05t20413Z' => 'bra', 'BraA08t35602Z' => 'bra', 'BraA09t36458Z' => 'bra', 'BraA09t42018Z' => 'bra', 'BraA09t42129Z' => 'bra', 'BraA10t42536Z' => 'bra', 'BraA10t42537Z' => 'bra', 'C01p10690' => 'bna', 'C02p03890' => 'bna', 'C02p03900' => 'bna', 'C03p04620' => 'bna', 'C04p19870' => 'bna', 'C04p59670' => 'bna', 'C05p02460' => 'bna', 'C05p02470' => 'bna', 'C08p00980' => 'bna', 'C08p00990' => 'bna', 'C08p51030' => 'bna', 'C08p52360' => 'bna', 'C09p09120' => 'bna', 'CAN.G19.15' => 'can', 'CAN.G251.10' => 'can', 'CAN.G251.9' => 'can', 'CAN.G398.24' => 'can', 'CAN.G410.32' => 'can', 'CAN.G881.2' => 'can', 'CANSAT01G3025' => 'cansat', 'CANSAT78G1211' => 'cansat', 'CANSAT78G1218' => 'cansat', 'CANSAT78G1521' => 'cansat', 'CANSAT78G1670' => 'cansat', 'CARHR003600' => 'chi', 'CARHR003610' => 'chi', 'CARHR006290' => 'chi', 'CARHR006430' => 'chi', 'CARHR124110' => 'chi', 'CARHR203870' => 'chi', 'CARHR203880' => 'chi', 'CARHR203890' => 'chi', 'CARHR276880' => 'chi', 'Carub.0001s0346' => 'cru', 'Carub.0001s0347' => 'cru', 'Carub.0001s0607' => 'cru', 'Carub.0003s2768' => 'cru', 'Carub.0003s2769' => 'cru', 'Carub.0004s1178' => 'cru', 'Carub.0006s0806' => 'cru', 'Carub.0006s0807' => 'cru', 'Carub.0006s0808' => 'cru', 'Carub.0008s0501' => 'cru', 'Carub.0008s2379' => 'cru', 'Ca_08655_v3' => 'car', 'Ca_08922_v3' => 'car', 'Ca_08923_v3' => 'car', 'Ca_09119_v3' => 'car', 'Ca_09703_v3' => 'car', 'Ca_09705_v3' => 'car', 'Ca_09835_v3' => 'car', 'Ca_26403_v3' => 'car', 'Ca_30719_v3' => 'car', 'CBR_g17958' => 'cbr', 'CBR_g40516' => 'cbr', 'Cc00_g05350' => 'ccan', 'Cc01_g18690' => 'ccan', 'Cc03_g04830' => 'ccan', 'Cc03_g04850' => 'ccan', 'CDE02G4469' => 'cde', 'CDE06G0883' => 'cde', 'CDE06G1295' => 'cde', 'CDE06G1390' => 'cde', 'CDE07G0584' => 'cde', 'CDE07G1084' => 'cde', 'CDE08G1259' => 'cde', 'Cfa002341' => 'cfa', 'Cfa024337' => 'cfa', 'Ciclev10004749m.g' => 'ccl', 'Ciclev10006127m.g' => 'ccl', 'Ciclev10019720m.g' => 'ccl', 'Ciclev10022652m.g' => 'ccl', 'CiPaw.01G190400' => 'cil', 'CiPaw.01G190500' => 'cil', 'CiPaw.02G116400' => 'cil', 'CiPaw.02G116500' => 'cil', 'CiPaw.04G183000' => 'cil', 'CiPaw.04G183300' => 'cil', 'ClCG05G004610' => 'cla', 'ClCG05G004620' => 'cla', 'ClCG06G006730' => 'cla', 'ClCG06G006740' => 'cla', 'ClCG11G003690' => 'cla', 'COL.COLO4_08276' => 'col', 'COL.COLO4_08277' => 'col', 'COL.COLO4_15787' => 'col', 'COL.COLO4_15789' => 'col', 'Cpa.g.c44815' => 'cpa', 'Cpa.g.sc52.144' => 'cpa', 'Cpa.g.sc58.46' => 'cpa', 'Cpa.g.sc58.47' => 'cpa', 'Cre08.g360900' => 'cre', 'CsaV3_2G013030' => 'csa', 'CsaV3_2G013050' => 'csa', 'CsaV3_2G015620' => 'csa', 'CsaV3_3G012590' => 'csa', 'CsaV3_3G012600' => 'csa', 'CSS0001641' => 'camsi', 'CSS0008310' => 'camsi', 'CSS0013011' => 'camsi', 'CSS0017147' => 'camsi', 'CSS0022970' => 'camsi', 'CSS0025655' => 'camsi', 'CSS0028665' => 'camsi', 'CSS0029117' => 'camsi', 'CSS0032024' => 'camsi', 'CSS0039681' => 'camsi', 'CSS0046516' => 'camsi', 'CSS0050307' => 'camsi', 'DCAR_005871' => 'dca', 'DCAR_007342' => 'dca', 'DCAR_024228' => 'dca', 'DCAR_027277' => 'dca', 'DCAR_030718' => 'dca', 'Dinv20287' => 'din', 'Dinv22461' => 'din', 'Dinv22464' => 'din', 'Dinv29912' => 'din', 'Dinv29913' => 'din', 'Dinv34580' => 'din', 'Dinv34582' => 'din', 'Dinv44632' => 'din', 'Duzib052G0266' => 'dzi', 'Duzib133G0907' => 'dzi', 'Duzib133G1034' => 'dzi', 'Duzib138G0207' => 'dzi', 'Duzib138G0491' => 'dzi', 'Duzib151G0812' => 'dzi', 'Duzib151G1166' => 'dzi', 'Duzib168G0192' => 'dzi', 'Duzib211G0077' => 'dzi', 'Duzib212G0429' => 'dzi', 'Duzib212G0472' => 'dzi', 'ECA233G2617' => 'eca', 'ECA236G4188' => 'eca', 'ECA240G0936' => 'eca', 'ECA240G1129' => 'eca', 'ECA247G0623' => 'eca', 'EL10Ac5g10451' => 'bvu', 'EL10Ac5g10453' => 'bvu', 'EL10Ac5g10894' => 'bvu', 'Eucgr.H00192' => 'egr', 'Eucgr.H00193' => 'egr', 'Eucgr.H00194' => 'egr', 'Eucgr.J01562' => 'egr', 'Eucgr.K03301' => 'egr', 'FAN02G0632' => 'fan', 'FAN05G5378' => 'fan', 'FAN09G3247' => 'fan', 'FAN12G0435' => 'fan', 'FAN12G2426' => 'fan', 'FAN14G1707' => 'fan', 'FAN14G4725' => 'fan', 'FAN15G2071' => 'fan', 'FAN17G3065' => 'fan', 'FAN19G1376' => 'fan', 'FAN20G0354' => 'fan', 'FAN20G2429' => 'fan', 'FAN20G2658' => 'fan', 'FAN24G2343' => 'fan', 'FAN27G2362' => 'fan', 'FAN28G1765' => 'fan', 'FvH4_1g16020' => 'fve', 'FvH4_2g04890' => 'fve', 'FvH4_2g22270' => 'fve', 'FvH4_4g02630' => 'fve', 'FvH4_4g02640' => 'fve', 'FvH4_6g02650' => 'fve', 'Glyma.02G140600' => 'gma', 'Glyma.03G159900' => 'gma', 'Glyma.05G234800' => 'gma', 'Glyma.07G269600' => 'gma', 'Glyma.08G042300' => 'gma', 'Glyma.10G033500' => 'gma', 'Glyma.10G185200' => 'gma', 'Glyma.17G004300' => 'gma', 'Glyma.19G161900' => 'gma', 'Glyma.20G205100' => 'gma', 'Glyma.20G205200' => 'gma', 'Gohir.A01G139101' => 'ghi', 'Gohir.A02G035600' => 'ghi', 'Gohir.A02G117901' => 'ghi', 'Gohir.A07G210100' => 'ghi', 'Gohir.A07G210200' => 'ghi', 'Gohir.A08G061100' => 'ghi', 'Gohir.A09G223000' => 'ghi', 'Gohir.A09G223100' => 'ghi', 'Gohir.A10G113900' => 'ghi', 'Gohir.A10G114000' => 'ghi', 'Gohir.D02G042300' => 'ghi', 'Gohir.D07G216100' => 'ghi', 'Gohir.D07G216200' => 'ghi', 'Gohir.D08G070400' => 'ghi', 'Gohir.D09G225000' => 'ghi', 'Gohir.D09G225100' => 'ghi', 'Gohir.D10G152300' => 'ghi', 'Gohir.D10G153200' => 'ghi', 'Gohir.D11G133701' => 'ghi', 'Gorai.004G074100' => 'gra', 'Gorai.005G046800' => 'gra', 'Gorai.006G246500' => 'gra', 'Gorai.006G246600' => 'gra', 'Gorai.007G142900' => 'gra', 'Gorai.011G171000' => 'gra', 'Gorai.011G171100' => 'gra', 'Gorai.013G104300' => 'gra', 'Gorai.013G104400' => 'gra', 'GSVIVG01000754001' => 'vvi', 'GSVIVG01000756001' => 'vvi', 'GSVIVG01010903001' => 'vvi', 'GSVIVG01017623001' => 'vvi', 'GSVIVG01018113001' => 'vvi', 'GSVIVG01018116001' => 'vvi', 'GSVIVG01018118001' => 'vvi', 'HanXRQChr03g0076211' => 'han', 'HanXRQChr03g0092431' => 'han', 'HanXRQChr03g0092441' => 'han', 'HanXRQChr03g0092591' => 'han', 'HanXRQChr03g0092671' => 'han', 'HanXRQChr03g0092681' => 'han', 'HanXRQChr03g0092691' => 'han', 'HanXRQChr03g0092701' => 'han', 'HanXRQChr03g0092721' => 'han', 'HanXRQChr03g0092731' => 'han', 'HanXRQChr04g0113681' => 'han', 'HanXRQChr10g0281371' => 'han', 'HanXRQChr11g0337141' => 'han', 'HanXRQChr13g0424521' => 'han', 'HanXRQChr13g0424531' => 'han', 'HanXRQChr13g0424541' => 'han', 'HanXRQChr16g0498221' => 'han', 'Haze_04377' => 'cav', 'Haze_11298' => 'cav', 'Haze_24547' => 'cav', 'Haze_24550' => 'cav', 'Haze_26587' => 'cav', 'Hma1.2p1_0650F.1_g195410' => 'hma', 'Hma1.2p1_0893F.1_g233470' => 'hma', 'HPP92_006508' => 'vpl', 'HPP92_024780' => 'vpl', 'Hund02688' => 'sun', 'Hund09380' => 'sun', 'Hund09381' => 'sun', 'Hund09832' => 'sun', 'Hund09833' => 'sun', 'Hund11351' => 'sun', 'Hund11513' => 'sun', 'Lalb_Chr06g0162591' => 'lal', 'Lalb_Chr06g0162601' => 'lal', 'Lalb_Chr06g0169321' => 'lal', 'Lalb_Chr09g0330951' => 'lal', 'Lalb_Chr16g0387631' => 'lal', 'Lalb_Chr21g0306241' => 'lal', 'Lalb_Chr25g0290051' => 'lal', 'Lalb_Chr25g0290061' => 'lal', 'Lalb_Chr25g0290071' => 'lal', 'Lj1g0003876' => 'lja', 'Lj1P1207T36' => 'lonja', 'Lj2C1156G12' => 'lonja', 'Lj3A793G39' => 'lonja', 'Lj3C580G2' => 'lonja', 'Lj3C780G2' => 'lonja', 'Lj3C780T4' => 'lonja', 'Lj3C793G9' => 'lonja', 'Lj4g0012960' => 'lja', 'Lj5g0021252' => 'lja', 'Lj5g0021484' => 'lja', 'Lj5g0024528' => 'lja', 'Lj6A399T12' => 'lonja', 'Lj6A656G65' => 'lonja', 'Lsat_1_v5_gn_3_125500' => 'lsa', 'Lsat_1_v5_gn_3_125540' => 'lsa', 'Lsat_1_v5_gn_5_72701' => 'lsa', 'Lsat_1_v5_gn_8_91560' => 'lsa', 'Lsat_1_v5_gn_9_9640' => 'lsa', 'Manes.01G200600' => 'mes', 'Manes.01G200700' => 'mes', 'Manes.03G168900' => 'mes', 'Manes.03G169000' => 'mes', 'Manes.05G085801' => 'mes', 'Manes.05G086200' => 'mes', 'Manes.15G036700' => 'mes', 'Manes.15G036900' => 'mes', 'Mapoly0004s0172' => 'mpo', 'Mapoly0023s0001' => 'mpo', 'Mapoly0142s0012' => 'mpo', 'MBI01_g32854_MAGBIO' => 'mbi', 'MBI11_g24427_MAGBIO' => 'mbi', 'MBI11_g47319_MAGBIO' => 'mbi', 'MCO01G433' => 'mco', 'MD00G1187800' => 'mdo', 'MD04G1226500' => 'mdo', 'MD05G1203900' => 'mdo', 'MD10G1191100' => 'mdo', 'MD12G1243500' => 'mdo', 'MD13G1207000' => 'mdo', 'MD13G1207100' => 'mdo', 'MD16G1208600' => 'mdo', 'Medtr1g050352' => 'mtr', 'Medtr1g070385' => 'mtr', 'Medtr1g070450' => 'mtr', 'Medtr1g075200' => 'mtr', 'Medtr1g075250' => 'mtr', 'Medtr1g075260' => 'mtr', 'Medtr1g475250' => 'mtr', 'Medtr4g075450' => 'mtr', 'Medtr7g096300' => 'mtr', 'Medtr8g105110' => 'mtr', 'MELO3C006470.2' => 'cme', 'MELO3C006471.2' => 'cme', 'MELO3C020772.2' => 'cme', 'MELO3C026780.2' => 'cme', 'MELO3C026781.2' => 'cme', 'Migut.D00390' => 'egut', 'Migut.G00435' => 'egut', 'Migut.G00436' => 'egut', 'Migut.G00718' => 'egut', 'MSTRG.21891' => 'ama', 'MSTRG.26910' => 'ama', 'MSTRG.4099' => 'ama', 'MSTRG.9925' => 'ama', 'Nitab4.5_0000165g0010' => 'nta', 'Nitab4.5_0000209g0180' => 'nta', 'Nitab4.5_0000244g0440' => 'nta', 'Nitab4.5_0000525g0220' => 'nta', 'Nitab4.5_0001597g0020' => 'nta', 'Nitab4.5_0001878g0040' => 'nta', 'Nitab4.5_0001878g0060' => 'nta', 'Nitab4.5_0002838g0100' => 'nta', 'Nitab4.5_0002838g0120' => 'nta', 'Nitab4.5_0004798g0030' => 'nta', 'Nitab4.5_0005420g0010' => 'nta', 'Nitab4.5_0005507g0010' => 'nta', 'Nitab4.5_0005574g0020' => 'nta', 'Nitab4.5_0005838g0010' => 'nta', 'Nitab4.5_0010580g0020' => 'nta', 'Nn1g02599' => 'nnu', 'Nn1g02608' => 'nnu', 'Nn3g17742' => 'nnu', 'Nn3g19534' => 'nnu', 'Nn3g19535' => 'nnu', 'Oeu008790.1' => 'oeu', 'Oeu008792.1' => 'oeu', 'Oeu032590.1' => 'oeu', 'Oeu035349.1' => 'oeu', 'Oeu049791.1' => 'oeu', 'Os01g0774500' => 'osa', 'Os03g0628800' => 'osa', 'Os03g0798600' => 'osa', 'Os05g0508800' => 'osa', 'Peaxi162Scf00036g02018' => 'pax', 'Peaxi162Scf00578g00032' => 'pax', 'Peaxi162Scf00578g00317' => 'pax', 'Peaxi162Scf00785g00114' => 'pax', 'Peaxi162Scf00813g00119' => 'pax', 'Peaxi162Scf00906g00227' => 'pax', 'PGR004G0875' => 'pgr', 'PGR004G2424' => 'pgr', 'PGR031G1239' => 'pgr', 'PGR031G2474' => 'pgr', 'PGR044G0423' => 'pgr', 'PGSC0003DMG400001128' => 'stu', 'PGSC0003DMG400007336' => 'stu', 'PGSC0003DMG400016318' => 'stu', 'PGSC0003DMG400016319' => 'stu', 'PGSC0003DMG400018074' => 'stu', 'Phvul.001G157700' => 'pvu', 'Phvul.002G148550' => 'pvu', 'Phvul.002G320200' => 'pvu', 'Phvul.003G089200' => 'pvu', 'Phvul.007G126000' => 'pvu', 'Phvul.007G126100' => 'pvu', 'Phvul.007G178000' => 'pvu', 'Phvul.007G178200' => 'pvu', 'Potri.002G043000' => 'ptr', 'Potri.002G043200' => 'ptr', 'Potri.003G123750' => 'ptr', 'Potri.005G055401' => 'ptr', 'Potri.005G219700' => 'ptr', 'Potri.005G220000' => 'ptr', 'Potri.008G161901' => 'ptr', 'Potri.008G162000' => 'ptr', 'Potri.008G162400' => 'ptr', 'Potri.010G076900' => 'ptr', 'Pp3c12_9180' => 'ppa', 'Pp3c13_19770' => 'ppa', 'Pp3c14_22950' => 'ppa', 'Pp3c16_12160' => 'ppa', 'Pp3c27_7820' => 'ppa', 'Pp3c2_3490' => 'ppa', 'Pp3c3_23700' => 'ppa', 'Pp3c3_36520' => 'ppa', 'Pp3c4_15250' => 'ppa', 'PRCOL_00007002' => 'pco', 'Prupe.1G030600' => 'ppe', 'Prupe.1G030700' => 'ppe', 'Prupe.6G345200' => 'ppe', 'Prupe.8G230300' => 'ppe', 'Prupe.8G230500' => 'ppe', 'Psat3g059600' => 'psa', 'Psat5g200920' => 'psa', 'Psat6g056440' => 'psa', 'Psat6g057360' => 'psa', 'Psat6g134120' => 'psa', 'Psat6g134160' => 'psa', 'Psat7g008640' => 'psa', 'Psat7g185240' => 'psa', 'PSO017G1330' => 'pso', 'PSO063G6097' => 'pso', 'PSO170G0835' => 'pso', 'PSO170G2499' => 'pso', 'PSO210G5058' => 'pso', 'PSO210G6154' => 'pso', 'PSO585G0031' => 'pso', 'PSO832G0264' => 'pso', 'PSO832G4288' => 'pso', 'QL03p027355' => 'qlo', 'QL03p027430' => 'qlo', 'QL04p081380' => 'qlo', 'QL06p015642' => 'qlo', 'QL06p015650' => 'qlo', 'QL06p015686' => 'qlo', 'QL12p042927' => 'qlo', 'QL93p1863_0035' => 'qlo', 'RcHm_v2.0_Chr3g0450581' => 'rch', 'RcHm_v2.0_Chr4g0390371' => 'rch', 'RcHm_v2.0_Chr4g0390381' => 'rch', 'RcHm_v2.0_Chr4g0390491' => 'rch', 'RcHm_v2.0_Chr4g0390501' => 'rch', 'RcHm_v2.0_Chr6g0289231' => 'rch', 'Rhsim04G0190400' => 'rsi', 'Rhsim04G0190500' => 'rsi', 'Rhsim04G0190600' => 'rsi', 'Rhsim13G0031400' => 'rsi', 'Rhsim13G0165600' => 'rsi', 'RhsimUnG0114600' => 'rsi', 'RhsimUnG0114700' => 'rsi', 'Sabra02G0034800' => 'sbr', 'Sabra02G0035100' => 'sbr', 'Sabra05G0168600' => 'sbr', 'Sabra05G0168800' => 'sbr', 'Sabra08G0123700' => 'sbr', 'Sabra10G0031900' => 'sbr', 'Sabra13G0039000' => 'sbr', 'SalBow2G0782' => 'sbo', 'SalBow2G1403' => 'sbo', 'SalBow4G0074' => 'sbo', 'SalBow4G2635' => 'sbo', 'SalBow5G3010' => 'sbo', 'Sc05g0000870' => 'sci', 'Sc05g0000890' => 'sci', 'Sc13g0005000' => 'sci', 'Sc13g0005030' => 'sci', 'Sc19g0003790' => 'sci', 'Sc19g0003800' => 'sci', 'Sed0003467' => 'sed', 'Sed0009355' => 'sed', 'Sed0009894' => 'sed', 'Sed0011972' => 'sed', 'Sed0021483' => 'sed', 'Sed0021750' => 'sed', 'Sed0026279' => 'sed', 'SEGI_05312' => 'sgi', 'SEGI_10112' => 'sgi', 'SEGI_15835' => 'sgi', 'SEGI_30386' => 'sgi', 'SEGI_34122' => 'sgi', 'SEGI_35063' => 'sgi', 'SGA_v2.0_scaffold101G29794' => 'sas', 'SGA_v2.0_scaffold1G00573' => 'sas', 'SGA_v2.0_scaffold79G25637' => 'sas', 'SGA_v2.0_scaffold88G27283' => 'sas', 'SGA_v2.0_scaffold88G27285' => 'sas', 'SGA_v2.0_scaffold88G27331' => 'sas', 'SHI09937' => 'shi', 'SMO119G0302' => 'smo', 'SMO137G0231' => 'smo', 'SMO367G1151' => 'smo', 'Solyc02g082000.3' => 'sly', 'Solyc06g031670.3' => 'sly', 'Solyc06g053810.3' => 'sly', 'Solyc07g025457.1' => 'sly', 'Solyc08g059740.1' => 'sly', 'Solyc08g059750.3' => 'sly', 'Solyc09g083370.3' => 'sly', 'Solyc12g038950.3' => 'sly', 'Sopen02g026630' => 'spe', 'Sopen06g018930' => 'spe', 'Sopen06g018940' => 'spe', 'Sopen08g009460' => 'spe', 'Sopen09g032290' => 'spe', 'Sp1g03080' => 'spa', 'Sp1g03090' => 'spa', 'Sp1g05480' => 'spa', 'Sp2g07860' => 'spa', 'Sp2g08430' => 'spa', 'Sp2g08440' => 'spa', 'Sp2g26200' => 'spa', 'Sp4g13170' => 'spa', 'Sp6g33840' => 'spa', 'SpUn1204_0010' => 'spa', 'TAR365G0908' => 'tar', 'TAR381G1270' => 'tar', 'TAR381G1651' => 'tar', 'TAR625G1131' => 'tar', 'TAR633G0962' => 'tar', 'TAR633G1729' => 'tar', 'TAR633G1864' => 'tar', 'TAR636G0221' => 'tar', 'TAR636G0314' => 'tar', 'TAR636G3202' => 'tar', 'THA.LOC104800805' => 'tha', 'THA.LOC104801096' => 'tha', 'THA.LOC104801555' => 'tha', 'THA.LOC104808491' => 'tha', 'THA.LOC104808595' => 'tha', 'THA.LOC104815985' => 'tha', 'THA.LOC104822250' => 'tha', 'THA.LOC104826071' => 'tha', 'Thecc.01G265200' => 'tca', 'Thecc.01G265300' => 'tca', 'Thecc.01G265700' => 'tca', 'Thecc.03G109100' => 'tca', 'Thecc.04G245900' => 'tca', 'Thecc.04G246000' => 'tca', 'Thhalv10003334m.g' => 'esa', 'Thhalv10005508m.g' => 'esa', 'Thhalv10005643m.g' => 'esa', 'Thhalv10007316m.g' => 'esa', 'Thhalv10009006m.g' => 'esa', 'Thhalv10009309m.g' => 'esa', 'Thhalv10014917m.g' => 'esa', 'Thhalv10014919m.g' => 'esa', 'Thhalv10015393m.g' => 'esa', 'Thhalv10016515m.g' => 'esa', 'Thhalv10029242m.g' => 'esa', 'TPR.G16654' => 'tpr', 'TPR.G20589' => 'tpr', 'TPR.G23029' => 'tpr', 'TPR.G27731' => 'tpr', 'TPR.G28889' => 'tpr', 'TPR.G28899' => 'tpr', 'TPR.G30846' => 'tpr', 'TPR.G5452' => 'tpr', 'TPR.G5713' => 'tpr', 'TPR.G9046' => 'tpr', 'TPR.G9061' => 'tpr', 'TWI09G1075' => 'twi', 'TWI12G0806' => 'twi', 'TWI18G0108' => 'twi', 'TWI53G1361' => 'twi', 'TWI73G0185' => 'twi', 'TWI73G0427' => 'twi', 'unitig_37.g12001' => 'ugi', 'unitig_747.g21660' => 'ugi', 'unitig_748.g7232' => 'ugi', 'unitig_748.g7315' => 'ugi', 'unitig_85.g27262' => 'ugi', 'unitig_92.g28220' => 'ugi', 'vmacro02632' => 'vma', 'vmacro08410' => 'vma', 'vmacro08411' => 'vma', 'vmacro15407' => 'vma', 'VMungo0251G3619' => 'vmu', 'VMungo0720G1204' => 'vmu', 'VMungo0720G1918' => 'vmu', 'VMungo0720G2387' => 'vmu', 'VMungo0720G2961' => 'vmu', 'VMungo1215G2154' => 'vmu', 'VMungo1383G2411' => 'vmu', 'Zm00001eb051130' => 'zma', 'Zm00001eb116830' => 'zma', 'Zm00001eb116850' => 'zma', 'Zm00001eb151740' => 'zma', 'Zm00001eb292360' => 'zma', 'Zm00001eb301640' => 'zma' ) $gf_id = 'HOM05D000856' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000856' ) $data_identifier = 'HOM05D000856' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 13, 'ath' => (int) 10, 'atr' => (int) 1, 'acertr' => (int) 8, 'cqu' => (int) 6, 'bca' => (int) 21, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 11, 'car' => (int) 9, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 8, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 5, 'fan' => (int) 16, 'fve' => (int) 6, 'gma' => (int) 11, 'ghi' => (int) 19, 'gra' => (int) 9, 'vvi' => (int) 7, 'han' => (int) 17, 'cav' => (int) 5, 'hma' => (int) 2, 'vpl' => (int) 2, 'sun' => (int) 7, 'lal' => (int) 9, 'lja' => (int) 5, 'lonja' => (int) 9, 'lsa' => (int) 5, 'mes' => (int) 8, 'mpo' => (int) 3, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 10, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 15, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 9, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 9, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 6, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 5, 'spa' => (int) 10, 'tar' => (int) 10, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 11, 'tpr' => (int) 11, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 4, 'vmu' => (int) 7, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb301640' $species_info = array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ) $local_species = 'cbr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000856', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p00010' => 'bna', 'A03p04160' => 'bna', 'A03p17160' => 'bna', 'A04p23370' => 'bna', 'A05p14860' => 'bna', 'A08p37020' => 'bna', 'A09p08050' => 'bna', 'A09p66800' => 'bna', 'A09p67940' => 'bna', 'A10p02680' => 'bna', 'A10p05320' => 'bna', 'Aa31LG1G20560' => 'aar', 'Aa31LG1G20610' => 'aar', 'Aa31LG1G7810' => 'aar', 'Aa31LG5G3590' => 'aar', 'Aa31LG5G6140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3819' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4683' => 'aag', 'Actinidia04480' => 'ach', 'Actinidia05466' => 'ach', 'Actinidia08445' => 'ach', 'Actinidia21170' => 'ach', 'Actinidia24812' => 'ach', 'Actinidia24951' => 'ach', 'Actinidia40088' => 'ach', 'Ah.02g111660' => 'amhyb', 'Ah.11g048900' => 'amhyb', 'Ah.11g049910' => 'amhyb', 'AL1G13870' => 'aly', 'AL1G13880' => 'aly', 'AL1G16760' => 'aly', 'AL390U10020' => 'aly', 'AL4G25520' => 'aly', 'AL6G19890' => 'aly', 'AL6G19900' => 'aly', 'AL6G19910' => 'aly', 'AL8G40100' => 'aly', 'Aqoxy2G03562' => 'aox', 'Aqoxy5G00316' => 'aox', 'Aqoxy5G00926' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1628KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1H403S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2FU6SJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.882I6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8YRY2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YN1SN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AF70II' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZA8L1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F916KL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHRD8H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KTZ8QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S22EMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8M29T' => 'arhy', 'AT1G04270' => 'ath', 'AT1G04280' => 'ath', 'AT1G06750' => 'ath', 'AT1G33850' => 'ath', 'AT2G30630' => 'ath', 'AT5G09490' => 'ath', 'AT5G09500' => 'ath', 'AT5G09510' => 'ath', 'AT5G43640' => 'ath', 'AT5G63070' => 'ath', 'ATR0605G315' => 'atr', 'Atru.chr11.175' => 'acertr', 'Atru.chr11.653' => 'acertr', 'Atru.chr3.1616' => 'acertr', 'Atru.chr4.2230' => 'acertr', 'Atru.chr4.2232' => 'acertr', 'Atru.chr5.1598' => 'acertr', 'Atru.chr5.1600' => 'acertr', 'Atru.chr5.2188' => 'acertr', 'AUR62008326' => 'cqu', 'AUR62011922' => 'cqu', 'AUR62011924' => 'cqu', 'AUR62021771' => 'cqu', 'AUR62032237' => 'cqu', 'AUR62032240' => 'cqu', 'BcaB01g05572' => 'bca', 'BcaB02g10337' => 'bca', 'BcaB04g19944' => 'bca', 'BcaB05g21548' => 'bca', 'BcaB05g21549' => 'bca', 'BcaB05g23227' => 'bca', 'BcaB06g26256' => 'bca', 'BcaB06g26257' => 'bca', 'BcaB06g28379' => 'bca', 'BcaC02g11159' => 'bca', 'BcaC03g13258' => 'bca', 'BcaC03g13259' => 'bca', 'BcaC05g24456' => 'bca', 'BcaC05g24457' => 'bca', 'BcaC07g36922' => 'bca', 'BcaC07g36923' => 'bca', 'BcaC07g42050' => 'bca', 'BcaC07g42176' => 'bca', 'BcaC07g42195' => 'bca', 'BcaC07g42196' => 'bca', 'BcaNung06674' => 'bca', 'BolC2t06351H' => 'bol', 'BolC2t06352H' => 'bol', 'BolC3t12993H' => 'bol', 'BolC4t23525H' => 'bol', 'BolC4t27475H' => 'bol', 'BolC5t29025H' => 'bol', 'BolC5t29026H' => 'bol', 'BolC8t46898H' => 'bol', 'BolC8t46899H' => 'bol', 'BolC8t52630H' => 'bol', 'BolC8t52765H' => 'bol', 'BolC9t53824H' => 'bol', 'BraA03t09760Z' => 'bra', 'BraA03t10990Z' => 'bra', 'BraA05t20413Z' => 'bra', 'BraA08t35602Z' => 'bra', 'BraA09t36458Z' => 'bra', 'BraA09t42018Z' => 'bra', 'BraA09t42129Z' => 'bra', 'BraA10t42536Z' => 'bra', 'BraA10t42537Z' => 'bra', 'C01p10690' => 'bna', 'C02p03890' => 'bna', 'C02p03900' => 'bna', 'C03p04620' => 'bna', 'C04p19870' => 'bna', 'C04p59670' => 'bna', 'C05p02460' => 'bna', 'C05p02470' => 'bna', 'C08p00980' => 'bna', 'C08p00990' => 'bna', 'C08p51030' => 'bna', 'C08p52360' => 'bna', 'C09p09120' => 'bna', 'CAN.G19.15' => 'can', 'CAN.G251.10' => 'can', 'CAN.G251.9' => 'can', 'CAN.G398.24' => 'can', 'CAN.G410.32' => 'can', 'CAN.G881.2' => 'can', 'CANSAT01G3025' => 'cansat', 'CANSAT78G1211' => 'cansat', 'CANSAT78G1218' => 'cansat', 'CANSAT78G1521' => 'cansat', 'CANSAT78G1670' => 'cansat', 'CARHR003600' => 'chi', 'CARHR003610' => 'chi', 'CARHR006290' => 'chi', 'CARHR006430' => 'chi', 'CARHR124110' => 'chi', 'CARHR203870' => 'chi', 'CARHR203880' => 'chi', 'CARHR203890' => 'chi', 'CARHR276880' => 'chi', 'Carub.0001s0346' => 'cru', 'Carub.0001s0347' => 'cru', 'Carub.0001s0607' => 'cru', 'Carub.0003s2768' => 'cru', 'Carub.0003s2769' => 'cru', 'Carub.0004s1178' => 'cru', 'Carub.0006s0806' => 'cru', 'Carub.0006s0807' => 'cru', 'Carub.0006s0808' => 'cru', 'Carub.0008s0501' => 'cru', 'Carub.0008s2379' => 'cru', 'Ca_08655_v3' => 'car', 'Ca_08922_v3' => 'car', 'Ca_08923_v3' => 'car', 'Ca_09119_v3' => 'car', 'Ca_09703_v3' => 'car', 'Ca_09705_v3' => 'car', 'Ca_09835_v3' => 'car', 'Ca_26403_v3' => 'car', 'Ca_30719_v3' => 'car', 'CBR_g17958' => 'cbr', 'CBR_g40516' => 'cbr', 'Cc00_g05350' => 'ccan', 'Cc01_g18690' => 'ccan', 'Cc03_g04830' => 'ccan', 'Cc03_g04850' => 'ccan', 'CDE02G4469' => 'cde', 'CDE06G0883' => 'cde', 'CDE06G1295' => 'cde', 'CDE06G1390' => 'cde', 'CDE07G0584' => 'cde', 'CDE07G1084' => 'cde', 'CDE08G1259' => 'cde', 'Cfa002341' => 'cfa', 'Cfa024337' => 'cfa', 'Ciclev10004749m.g' => 'ccl', 'Ciclev10006127m.g' => 'ccl', 'Ciclev10019720m.g' => 'ccl', 'Ciclev10022652m.g' => 'ccl', 'CiPaw.01G190400' => 'cil', 'CiPaw.01G190500' => 'cil', 'CiPaw.02G116400' => 'cil', 'CiPaw.02G116500' => 'cil', 'CiPaw.04G183000' => 'cil', 'CiPaw.04G183300' => 'cil', 'ClCG05G004610' => 'cla', 'ClCG05G004620' => 'cla', 'ClCG06G006730' => 'cla', 'ClCG06G006740' => 'cla', 'ClCG11G003690' => 'cla', 'COL.COLO4_08276' => 'col', 'COL.COLO4_08277' => 'col', 'COL.COLO4_15787' => 'col', 'COL.COLO4_15789' => 'col', 'Cpa.g.c44815' => 'cpa', 'Cpa.g.sc52.144' => 'cpa', 'Cpa.g.sc58.46' => 'cpa', 'Cpa.g.sc58.47' => 'cpa', 'Cre08.g360900' => 'cre', 'CsaV3_2G013030' => 'csa', 'CsaV3_2G013050' => 'csa', 'CsaV3_2G015620' => 'csa', 'CsaV3_3G012590' => 'csa', 'CsaV3_3G012600' => 'csa', 'CSS0001641' => 'camsi', 'CSS0008310' => 'camsi', 'CSS0013011' => 'camsi', 'CSS0017147' => 'camsi', 'CSS0022970' => 'camsi', 'CSS0025655' => 'camsi', 'CSS0028665' => 'camsi', 'CSS0029117' => 'camsi', 'CSS0032024' => 'camsi', 'CSS0039681' => 'camsi', 'CSS0046516' => 'camsi', 'CSS0050307' => 'camsi', 'DCAR_005871' => 'dca', 'DCAR_007342' => 'dca', 'DCAR_024228' => 'dca', 'DCAR_027277' => 'dca', 'DCAR_030718' => 'dca', 'Dinv20287' => 'din', 'Dinv22461' => 'din', 'Dinv22464' => 'din', 'Dinv29912' => 'din', 'Dinv29913' => 'din', 'Dinv34580' => 'din', 'Dinv34582' => 'din', 'Dinv44632' => 'din', 'Duzib052G0266' => 'dzi', 'Duzib133G0907' => 'dzi', 'Duzib133G1034' => 'dzi', 'Duzib138G0207' => 'dzi', 'Duzib138G0491' => 'dzi', 'Duzib151G0812' => 'dzi', 'Duzib151G1166' => 'dzi', 'Duzib168G0192' => 'dzi', 'Duzib211G0077' => 'dzi', 'Duzib212G0429' => 'dzi', 'Duzib212G0472' => 'dzi', 'ECA233G2617' => 'eca', 'ECA236G4188' => 'eca', 'ECA240G0936' => 'eca', 'ECA240G1129' => 'eca', 'ECA247G0623' => 'eca', 'EL10Ac5g10451' => 'bvu', 'EL10Ac5g10453' => 'bvu', 'EL10Ac5g10894' => 'bvu', 'Eucgr.H00192' => 'egr', 'Eucgr.H00193' => 'egr', 'Eucgr.H00194' => 'egr', 'Eucgr.J01562' => 'egr', 'Eucgr.K03301' => 'egr', 'FAN02G0632' => 'fan', 'FAN05G5378' => 'fan', 'FAN09G3247' => 'fan', 'FAN12G0435' => 'fan', 'FAN12G2426' => 'fan', 'FAN14G1707' => 'fan', 'FAN14G4725' => 'fan', 'FAN15G2071' => 'fan', 'FAN17G3065' => 'fan', 'FAN19G1376' => 'fan', 'FAN20G0354' => 'fan', 'FAN20G2429' => 'fan', 'FAN20G2658' => 'fan', 'FAN24G2343' => 'fan', 'FAN27G2362' => 'fan', 'FAN28G1765' => 'fan', 'FvH4_1g16020' => 'fve', 'FvH4_2g04890' => 'fve', 'FvH4_2g22270' => 'fve', 'FvH4_4g02630' => 'fve', 'FvH4_4g02640' => 'fve', 'FvH4_6g02650' => 'fve', 'Glyma.02G140600' => 'gma', 'Glyma.03G159900' => 'gma', 'Glyma.05G234800' => 'gma', 'Glyma.07G269600' => 'gma', 'Glyma.08G042300' => 'gma', 'Glyma.10G033500' => 'gma', 'Glyma.10G185200' => 'gma', 'Glyma.17G004300' => 'gma', 'Glyma.19G161900' => 'gma', 'Glyma.20G205100' => 'gma', 'Glyma.20G205200' => 'gma', 'Gohir.A01G139101' => 'ghi', 'Gohir.A02G035600' => 'ghi', 'Gohir.A02G117901' => 'ghi', 'Gohir.A07G210100' => 'ghi', 'Gohir.A07G210200' => 'ghi', 'Gohir.A08G061100' => 'ghi', 'Gohir.A09G223000' => 'ghi', 'Gohir.A09G223100' => 'ghi', 'Gohir.A10G113900' => 'ghi', 'Gohir.A10G114000' => 'ghi', 'Gohir.D02G042300' => 'ghi', 'Gohir.D07G216100' => 'ghi', 'Gohir.D07G216200' => 'ghi', 'Gohir.D08G070400' => 'ghi', 'Gohir.D09G225000' => 'ghi', 'Gohir.D09G225100' => 'ghi', 'Gohir.D10G152300' => 'ghi', 'Gohir.D10G153200' => 'ghi', 'Gohir.D11G133701' => 'ghi', 'Gorai.004G074100' => 'gra', 'Gorai.005G046800' => 'gra', 'Gorai.006G246500' => 'gra', 'Gorai.006G246600' => 'gra', 'Gorai.007G142900' => 'gra', 'Gorai.011G171000' => 'gra', 'Gorai.011G171100' => 'gra', 'Gorai.013G104300' => 'gra', 'Gorai.013G104400' => 'gra', 'GSVIVG01000754001' => 'vvi', 'GSVIVG01000756001' => 'vvi', 'GSVIVG01010903001' => 'vvi', 'GSVIVG01017623001' => 'vvi', 'GSVIVG01018113001' => 'vvi', 'GSVIVG01018116001' => 'vvi', 'GSVIVG01018118001' => 'vvi', 'HanXRQChr03g0076211' => 'han', 'HanXRQChr03g0092431' => 'han', 'HanXRQChr03g0092441' => 'han', 'HanXRQChr03g0092591' => 'han', 'HanXRQChr03g0092671' => 'han', 'HanXRQChr03g0092681' => 'han', 'HanXRQChr03g0092691' => 'han', 'HanXRQChr03g0092701' => 'han', 'HanXRQChr03g0092721' => 'han', 'HanXRQChr03g0092731' => 'han', 'HanXRQChr04g0113681' => 'han', 'HanXRQChr10g0281371' => 'han', 'HanXRQChr11g0337141' => 'han', 'HanXRQChr13g0424521' => 'han', 'HanXRQChr13g0424531' => 'han', 'HanXRQChr13g0424541' => 'han', 'HanXRQChr16g0498221' => 'han', 'Haze_04377' => 'cav', 'Haze_11298' => 'cav', 'Haze_24547' => 'cav', 'Haze_24550' => 'cav', 'Haze_26587' => 'cav', 'Hma1.2p1_0650F.1_g195410' => 'hma', 'Hma1.2p1_0893F.1_g233470' => 'hma', 'HPP92_006508' => 'vpl', 'HPP92_024780' => 'vpl', 'Hund02688' => 'sun', 'Hund09380' => 'sun', 'Hund09381' => 'sun', 'Hund09832' => 'sun', 'Hund09833' => 'sun', 'Hund11351' => 'sun', 'Hund11513' => 'sun', 'Lalb_Chr06g0162591' => 'lal', 'Lalb_Chr06g0162601' => 'lal', 'Lalb_Chr06g0169321' => 'lal', 'Lalb_Chr09g0330951' => 'lal', 'Lalb_Chr16g0387631' => 'lal', 'Lalb_Chr21g0306241' => 'lal', 'Lalb_Chr25g0290051' => 'lal', 'Lalb_Chr25g0290061' => 'lal', 'Lalb_Chr25g0290071' => 'lal', 'Lj1g0003876' => 'lja', 'Lj1P1207T36' => 'lonja', 'Lj2C1156G12' => 'lonja', 'Lj3A793G39' => 'lonja', 'Lj3C580G2' => 'lonja', 'Lj3C780G2' => 'lonja', 'Lj3C780T4' => 'lonja', 'Lj3C793G9' => 'lonja', 'Lj4g0012960' => 'lja', 'Lj5g0021252' => 'lja', 'Lj5g0021484' => 'lja', 'Lj5g0024528' => 'lja', 'Lj6A399T12' => 'lonja', 'Lj6A656G65' => 'lonja', 'Lsat_1_v5_gn_3_125500' => 'lsa', 'Lsat_1_v5_gn_3_125540' => 'lsa', 'Lsat_1_v5_gn_5_72701' => 'lsa', 'Lsat_1_v5_gn_8_91560' => 'lsa', 'Lsat_1_v5_gn_9_9640' => 'lsa', 'Manes.01G200600' => 'mes', 'Manes.01G200700' => 'mes', 'Manes.03G168900' => 'mes', 'Manes.03G169000' => 'mes', 'Manes.05G085801' => 'mes', 'Manes.05G086200' => 'mes', 'Manes.15G036700' => 'mes', 'Manes.15G036900' => 'mes', 'Mapoly0004s0172' => 'mpo', 'Mapoly0023s0001' => 'mpo', 'Mapoly0142s0012' => 'mpo', 'MBI01_g32854_MAGBIO' => 'mbi', 'MBI11_g24427_MAGBIO' => 'mbi', 'MBI11_g47319_MAGBIO' => 'mbi', 'MCO01G433' => 'mco', 'MD00G1187800' => 'mdo', 'MD04G1226500' => 'mdo', 'MD05G1203900' => 'mdo', 'MD10G1191100' => 'mdo', 'MD12G1243500' => 'mdo', 'MD13G1207000' => 'mdo', 'MD13G1207100' => 'mdo', 'MD16G1208600' => 'mdo', 'Medtr1g050352' => 'mtr', 'Medtr1g070385' => 'mtr', 'Medtr1g070450' => 'mtr', 'Medtr1g075200' => 'mtr', 'Medtr1g075250' => 'mtr', 'Medtr1g075260' => 'mtr', 'Medtr1g475250' => 'mtr', 'Medtr4g075450' => 'mtr', 'Medtr7g096300' => 'mtr', 'Medtr8g105110' => 'mtr', 'MELO3C006470.2' => 'cme', 'MELO3C006471.2' => 'cme', 'MELO3C020772.2' => 'cme', 'MELO3C026780.2' => 'cme', 'MELO3C026781.2' => 'cme', 'Migut.D00390' => 'egut', 'Migut.G00435' => 'egut', 'Migut.G00436' => 'egut', 'Migut.G00718' => 'egut', 'MSTRG.21891' => 'ama', 'MSTRG.26910' => 'ama', 'MSTRG.4099' => 'ama', 'MSTRG.9925' => 'ama', 'Nitab4.5_0000165g0010' => 'nta', 'Nitab4.5_0000209g0180' => 'nta', 'Nitab4.5_0000244g0440' => 'nta', 'Nitab4.5_0000525g0220' => 'nta', 'Nitab4.5_0001597g0020' => 'nta', 'Nitab4.5_0001878g0040' => 'nta', 'Nitab4.5_0001878g0060' => 'nta', 'Nitab4.5_0002838g0100' => 'nta', 'Nitab4.5_0002838g0120' => 'nta', 'Nitab4.5_0004798g0030' => 'nta', 'Nitab4.5_0005420g0010' => 'nta', 'Nitab4.5_0005507g0010' => 'nta', 'Nitab4.5_0005574g0020' => 'nta', 'Nitab4.5_0005838g0010' => 'nta', 'Nitab4.5_0010580g0020' => 'nta', 'Nn1g02599' => 'nnu', 'Nn1g02608' => 'nnu', 'Nn3g17742' => 'nnu', 'Nn3g19534' => 'nnu', 'Nn3g19535' => 'nnu', 'Oeu008790.1' => 'oeu', 'Oeu008792.1' => 'oeu', 'Oeu032590.1' => 'oeu', 'Oeu035349.1' => 'oeu', 'Oeu049791.1' => 'oeu', 'Os01g0774500' => 'osa', 'Os03g0628800' => 'osa', 'Os03g0798600' => 'osa', 'Os05g0508800' => 'osa', 'Peaxi162Scf00036g02018' => 'pax', 'Peaxi162Scf00578g00032' => 'pax', 'Peaxi162Scf00578g00317' => 'pax', 'Peaxi162Scf00785g00114' => 'pax', 'Peaxi162Scf00813g00119' => 'pax', 'Peaxi162Scf00906g00227' => 'pax', 'PGR004G0875' => 'pgr', 'PGR004G2424' => 'pgr', 'PGR031G1239' => 'pgr', 'PGR031G2474' => 'pgr', 'PGR044G0423' => 'pgr', 'PGSC0003DMG400001128' => 'stu', 'PGSC0003DMG400007336' => 'stu', 'PGSC0003DMG400016318' => 'stu', 'PGSC0003DMG400016319' => 'stu', 'PGSC0003DMG400018074' => 'stu', 'Phvul.001G157700' => 'pvu', 'Phvul.002G148550' => 'pvu', 'Phvul.002G320200' => 'pvu', 'Phvul.003G089200' => 'pvu', 'Phvul.007G126000' => 'pvu', 'Phvul.007G126100' => 'pvu', 'Phvul.007G178000' => 'pvu', 'Phvul.007G178200' => 'pvu', 'Potri.002G043000' => 'ptr', 'Potri.002G043200' => 'ptr', 'Potri.003G123750' => 'ptr', 'Potri.005G055401' => 'ptr', 'Potri.005G219700' => 'ptr', 'Potri.005G220000' => 'ptr', 'Potri.008G161901' => 'ptr', 'Potri.008G162000' => 'ptr', 'Potri.008G162400' => 'ptr', 'Potri.010G076900' => 'ptr', 'Pp3c12_9180' => 'ppa', 'Pp3c13_19770' => 'ppa', 'Pp3c14_22950' => 'ppa', 'Pp3c16_12160' => 'ppa', 'Pp3c27_7820' => 'ppa', 'Pp3c2_3490' => 'ppa', 'Pp3c3_23700' => 'ppa', 'Pp3c3_36520' => 'ppa', 'Pp3c4_15250' => 'ppa', 'PRCOL_00007002' => 'pco', 'Prupe.1G030600' => 'ppe', 'Prupe.1G030700' => 'ppe', 'Prupe.6G345200' => 'ppe', 'Prupe.8G230300' => 'ppe', 'Prupe.8G230500' => 'ppe', 'Psat3g059600' => 'psa', 'Psat5g200920' => 'psa', 'Psat6g056440' => 'psa', 'Psat6g057360' => 'psa', 'Psat6g134120' => 'psa', 'Psat6g134160' => 'psa', 'Psat7g008640' => 'psa', 'Psat7g185240' => 'psa', 'PSO017G1330' => 'pso', 'PSO063G6097' => 'pso', 'PSO170G0835' => 'pso', 'PSO170G2499' => 'pso', 'PSO210G5058' => 'pso', 'PSO210G6154' => 'pso', 'PSO585G0031' => 'pso', 'PSO832G0264' => 'pso', 'PSO832G4288' => 'pso', 'QL03p027355' => 'qlo', 'QL03p027430' => 'qlo', 'QL04p081380' => 'qlo', 'QL06p015642' => 'qlo', 'QL06p015650' => 'qlo', 'QL06p015686' => 'qlo', 'QL12p042927' => 'qlo', 'QL93p1863_0035' => 'qlo', 'RcHm_v2.0_Chr3g0450581' => 'rch', 'RcHm_v2.0_Chr4g0390371' => 'rch', 'RcHm_v2.0_Chr4g0390381' => 'rch', 'RcHm_v2.0_Chr4g0390491' => 'rch', 'RcHm_v2.0_Chr4g0390501' => 'rch', 'RcHm_v2.0_Chr6g0289231' => 'rch', 'Rhsim04G0190400' => 'rsi', 'Rhsim04G0190500' => 'rsi', 'Rhsim04G0190600' => 'rsi', 'Rhsim13G0031400' => 'rsi', 'Rhsim13G0165600' => 'rsi', 'RhsimUnG0114600' => 'rsi', 'RhsimUnG0114700' => 'rsi', 'Sabra02G0034800' => 'sbr', 'Sabra02G0035100' => 'sbr', 'Sabra05G0168600' => 'sbr', 'Sabra05G0168800' => 'sbr', 'Sabra08G0123700' => 'sbr', 'Sabra10G0031900' => 'sbr', 'Sabra13G0039000' => 'sbr', 'SalBow2G0782' => 'sbo', 'SalBow2G1403' => 'sbo', 'SalBow4G0074' => 'sbo', 'SalBow4G2635' => 'sbo', 'SalBow5G3010' => 'sbo', 'Sc05g0000870' => 'sci', 'Sc05g0000890' => 'sci', 'Sc13g0005000' => 'sci', 'Sc13g0005030' => 'sci', 'Sc19g0003790' => 'sci', 'Sc19g0003800' => 'sci', 'Sed0003467' => 'sed', 'Sed0009355' => 'sed', 'Sed0009894' => 'sed', 'Sed0011972' => 'sed', 'Sed0021483' => 'sed', 'Sed0021750' => 'sed', 'Sed0026279' => 'sed', 'SEGI_05312' => 'sgi', 'SEGI_10112' => 'sgi', 'SEGI_15835' => 'sgi', 'SEGI_30386' => 'sgi', 'SEGI_34122' => 'sgi', 'SEGI_35063' => 'sgi', 'SGA_v2.0_scaffold101G29794' => 'sas', 'SGA_v2.0_scaffold1G00573' => 'sas', 'SGA_v2.0_scaffold79G25637' => 'sas', 'SGA_v2.0_scaffold88G27283' => 'sas', 'SGA_v2.0_scaffold88G27285' => 'sas', 'SGA_v2.0_scaffold88G27331' => 'sas', 'SHI09937' => 'shi', 'SMO119G0302' => 'smo', 'SMO137G0231' => 'smo', 'SMO367G1151' => 'smo', 'Solyc02g082000.3' => 'sly', 'Solyc06g031670.3' => 'sly', 'Solyc06g053810.3' => 'sly', 'Solyc07g025457.1' => 'sly', 'Solyc08g059740.1' => 'sly', 'Solyc08g059750.3' => 'sly', 'Solyc09g083370.3' => 'sly', 'Solyc12g038950.3' => 'sly', 'Sopen02g026630' => 'spe', 'Sopen06g018930' => 'spe', 'Sopen06g018940' => 'spe', 'Sopen08g009460' => 'spe', 'Sopen09g032290' => 'spe', 'Sp1g03080' => 'spa', 'Sp1g03090' => 'spa', 'Sp1g05480' => 'spa', 'Sp2g07860' => 'spa', 'Sp2g08430' => 'spa', 'Sp2g08440' => 'spa', 'Sp2g26200' => 'spa', 'Sp4g13170' => 'spa', 'Sp6g33840' => 'spa', 'SpUn1204_0010' => 'spa', 'TAR365G0908' => 'tar', 'TAR381G1270' => 'tar', 'TAR381G1651' => 'tar', 'TAR625G1131' => 'tar', 'TAR633G0962' => 'tar', 'TAR633G1729' => 'tar', 'TAR633G1864' => 'tar', 'TAR636G0221' => 'tar', 'TAR636G0314' => 'tar', 'TAR636G3202' => 'tar', 'THA.LOC104800805' => 'tha', 'THA.LOC104801096' => 'tha', 'THA.LOC104801555' => 'tha', 'THA.LOC104808491' => 'tha', 'THA.LOC104808595' => 'tha', 'THA.LOC104815985' => 'tha', 'THA.LOC104822250' => 'tha', 'THA.LOC104826071' => 'tha', 'Thecc.01G265200' => 'tca', 'Thecc.01G265300' => 'tca', 'Thecc.01G265700' => 'tca', 'Thecc.03G109100' => 'tca', 'Thecc.04G245900' => 'tca', 'Thecc.04G246000' => 'tca', 'Thhalv10003334m.g' => 'esa', 'Thhalv10005508m.g' => 'esa', 'Thhalv10005643m.g' => 'esa', 'Thhalv10007316m.g' => 'esa', 'Thhalv10009006m.g' => 'esa', 'Thhalv10009309m.g' => 'esa', 'Thhalv10014917m.g' => 'esa', 'Thhalv10014919m.g' => 'esa', 'Thhalv10015393m.g' => 'esa', 'Thhalv10016515m.g' => 'esa', 'Thhalv10029242m.g' => 'esa', 'TPR.G16654' => 'tpr', 'TPR.G20589' => 'tpr', 'TPR.G23029' => 'tpr', 'TPR.G27731' => 'tpr', 'TPR.G28889' => 'tpr', 'TPR.G28899' => 'tpr', 'TPR.G30846' => 'tpr', 'TPR.G5452' => 'tpr', 'TPR.G5713' => 'tpr', 'TPR.G9046' => 'tpr', 'TPR.G9061' => 'tpr', 'TWI09G1075' => 'twi', 'TWI12G0806' => 'twi', 'TWI18G0108' => 'twi', 'TWI53G1361' => 'twi', 'TWI73G0185' => 'twi', 'TWI73G0427' => 'twi', 'unitig_37.g12001' => 'ugi', 'unitig_747.g21660' => 'ugi', 'unitig_748.g7232' => 'ugi', 'unitig_748.g7315' => 'ugi', 'unitig_85.g27262' => 'ugi', 'unitig_92.g28220' => 'ugi', 'vmacro02632' => 'vma', 'vmacro08410' => 'vma', 'vmacro08411' => 'vma', 'vmacro15407' => 'vma', 'VMungo0251G3619' => 'vmu', 'VMungo0720G1204' => 'vmu', 'VMungo0720G1918' => 'vmu', 'VMungo0720G2387' => 'vmu', 'VMungo0720G2961' => 'vmu', 'VMungo1215G2154' => 'vmu', 'VMungo1383G2411' => 'vmu', 'Zm00001eb051130' => 'zma', 'Zm00001eb116830' => 'zma', 'Zm00001eb116850' => 'zma', 'Zm00001eb151740' => 'zma', 'Zm00001eb292360' => 'zma', 'Zm00001eb301640' => 'zma' ), 'gf_id' => 'HOM05D000856', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000856' ), 'data_identifier' => 'HOM05D000856', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000856', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p00010' => 'bna', 'A03p04160' => 'bna', 'A03p17160' => 'bna', 'A04p23370' => 'bna', 'A05p14860' => 'bna', 'A08p37020' => 'bna', 'A09p08050' => 'bna', 'A09p66800' => 'bna', 'A09p67940' => 'bna', 'A10p02680' => 'bna', 'A10p05320' => 'bna', 'Aa31LG1G20560' => 'aar', 'Aa31LG1G20610' => 'aar', 'Aa31LG1G7810' => 'aar', 'Aa31LG5G3590' => 'aar', 'Aa31LG5G6140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3819' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4683' => 'aag', 'Actinidia04480' => 'ach', 'Actinidia05466' => 'ach', 'Actinidia08445' => 'ach', 'Actinidia21170' => 'ach', 'Actinidia24812' => 'ach', 'Actinidia24951' => 'ach', 'Actinidia40088' => 'ach', 'Ah.02g111660' => 'amhyb', 'Ah.11g048900' => 'amhyb', 'Ah.11g049910' => 'amhyb', 'AL1G13870' => 'aly', 'AL1G13880' => 'aly', 'AL1G16760' => 'aly', 'AL390U10020' => 'aly', 'AL4G25520' => 'aly', 'AL6G19890' => 'aly', 'AL6G19900' => 'aly', 'AL6G19910' => 'aly', 'AL8G40100' => 'aly', 'Aqoxy2G03562' => 'aox', 'Aqoxy5G00316' => 'aox', 'Aqoxy5G00926' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1628KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1H403S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2FU6SJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.882I6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8YRY2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YN1SN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AF70II' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZA8L1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F916KL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHRD8H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KTZ8QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S22EMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8M29T' => 'arhy', 'AT1G04270' => 'ath', 'AT1G04280' => 'ath', 'AT1G06750' => 'ath', 'AT1G33850' => 'ath', 'AT2G30630' => 'ath', 'AT5G09490' => 'ath', 'AT5G09500' => 'ath', 'AT5G09510' => 'ath', 'AT5G43640' => 'ath', 'AT5G63070' => 'ath', 'ATR0605G315' => 'atr', 'Atru.chr11.175' => 'acertr', 'Atru.chr11.653' => 'acertr', 'Atru.chr3.1616' => 'acertr', 'Atru.chr4.2230' => 'acertr', 'Atru.chr4.2232' => 'acertr', 'Atru.chr5.1598' => 'acertr', 'Atru.chr5.1600' => 'acertr', 'Atru.chr5.2188' => 'acertr', 'AUR62008326' => 'cqu', 'AUR62011922' => 'cqu', 'AUR62011924' => 'cqu', 'AUR62021771' => 'cqu', 'AUR62032237' => 'cqu', 'AUR62032240' => 'cqu', 'BcaB01g05572' => 'bca', 'BcaB02g10337' => 'bca', 'BcaB04g19944' => 'bca', 'BcaB05g21548' => 'bca', 'BcaB05g21549' => 'bca', 'BcaB05g23227' => 'bca', 'BcaB06g26256' => 'bca', 'BcaB06g26257' => 'bca', 'BcaB06g28379' => 'bca', 'BcaC02g11159' => 'bca', 'BcaC03g13258' => 'bca', 'BcaC03g13259' => 'bca', 'BcaC05g24456' => 'bca', 'BcaC05g24457' => 'bca', 'BcaC07g36922' => 'bca', 'BcaC07g36923' => 'bca', 'BcaC07g42050' => 'bca', 'BcaC07g42176' => 'bca', 'BcaC07g42195' => 'bca', 'BcaC07g42196' => 'bca', 'BcaNung06674' => 'bca', 'BolC2t06351H' => 'bol', 'BolC2t06352H' => 'bol', 'BolC3t12993H' => 'bol', 'BolC4t23525H' => 'bol', 'BolC4t27475H' => 'bol', 'BolC5t29025H' => 'bol', 'BolC5t29026H' => 'bol', 'BolC8t46898H' => 'bol', 'BolC8t46899H' => 'bol', 'BolC8t52630H' => 'bol', 'BolC8t52765H' => 'bol', 'BolC9t53824H' => 'bol', 'BraA03t09760Z' => 'bra', 'BraA03t10990Z' => 'bra', 'BraA05t20413Z' => 'bra', 'BraA08t35602Z' => 'bra', 'BraA09t36458Z' => 'bra', 'BraA09t42018Z' => 'bra', 'BraA09t42129Z' => 'bra', 'BraA10t42536Z' => 'bra', 'BraA10t42537Z' => 'bra', 'C01p10690' => 'bna', 'C02p03890' => 'bna', 'C02p03900' => 'bna', 'C03p04620' => 'bna', 'C04p19870' => 'bna', 'C04p59670' => 'bna', 'C05p02460' => 'bna', 'C05p02470' => 'bna', 'C08p00980' => 'bna', 'C08p00990' => 'bna', 'C08p51030' => 'bna', 'C08p52360' => 'bna', 'C09p09120' => 'bna', 'CAN.G19.15' => 'can', 'CAN.G251.10' => 'can', 'CAN.G251.9' => 'can', 'CAN.G398.24' => 'can', 'CAN.G410.32' => 'can', 'CAN.G881.2' => 'can', 'CANSAT01G3025' => 'cansat', 'CANSAT78G1211' => 'cansat', 'CANSAT78G1218' => 'cansat', 'CANSAT78G1521' => 'cansat', 'CANSAT78G1670' => 'cansat', 'CARHR003600' => 'chi', 'CARHR003610' => 'chi', 'CARHR006290' => 'chi', 'CARHR006430' => 'chi', 'CARHR124110' => 'chi', 'CARHR203870' => 'chi', 'CARHR203880' => 'chi', 'CARHR203890' => 'chi', 'CARHR276880' => 'chi', 'Carub.0001s0346' => 'cru', 'Carub.0001s0347' => 'cru', 'Carub.0001s0607' => 'cru', 'Carub.0003s2768' => 'cru', 'Carub.0003s2769' => 'cru', 'Carub.0004s1178' => 'cru', 'Carub.0006s0806' => 'cru', 'Carub.0006s0807' => 'cru', 'Carub.0006s0808' => 'cru', 'Carub.0008s0501' => 'cru', 'Carub.0008s2379' => 'cru', 'Ca_08655_v3' => 'car', 'Ca_08922_v3' => 'car', 'Ca_08923_v3' => 'car', 'Ca_09119_v3' => 'car', 'Ca_09703_v3' => 'car', 'Ca_09705_v3' => 'car', 'Ca_09835_v3' => 'car', 'Ca_26403_v3' => 'car', 'Ca_30719_v3' => 'car', 'CBR_g17958' => 'cbr', 'CBR_g40516' => 'cbr', 'Cc00_g05350' => 'ccan', 'Cc01_g18690' => 'ccan', 'Cc03_g04830' => 'ccan', 'Cc03_g04850' => 'ccan', 'CDE02G4469' => 'cde', 'CDE06G0883' => 'cde', 'CDE06G1295' => 'cde', 'CDE06G1390' => 'cde', 'CDE07G0584' => 'cde', 'CDE07G1084' => 'cde', 'CDE08G1259' => 'cde', 'Cfa002341' => 'cfa', 'Cfa024337' => 'cfa', 'Ciclev10004749m.g' => 'ccl', 'Ciclev10006127m.g' => 'ccl', 'Ciclev10019720m.g' => 'ccl', 'Ciclev10022652m.g' => 'ccl', 'CiPaw.01G190400' => 'cil', 'CiPaw.01G190500' => 'cil', 'CiPaw.02G116400' => 'cil', 'CiPaw.02G116500' => 'cil', 'CiPaw.04G183000' => 'cil', 'CiPaw.04G183300' => 'cil', 'ClCG05G004610' => 'cla', 'ClCG05G004620' => 'cla', 'ClCG06G006730' => 'cla', 'ClCG06G006740' => 'cla', 'ClCG11G003690' => 'cla', 'COL.COLO4_08276' => 'col', 'COL.COLO4_08277' => 'col', 'COL.COLO4_15787' => 'col', 'COL.COLO4_15789' => 'col', 'Cpa.g.c44815' => 'cpa', 'Cpa.g.sc52.144' => 'cpa', 'Cpa.g.sc58.46' => 'cpa', 'Cpa.g.sc58.47' => 'cpa', 'Cre08.g360900' => 'cre', 'CsaV3_2G013030' => 'csa', 'CsaV3_2G013050' => 'csa', 'CsaV3_2G015620' => 'csa', 'CsaV3_3G012590' => 'csa', 'CsaV3_3G012600' => 'csa', 'CSS0001641' => 'camsi', 'CSS0008310' => 'camsi', 'CSS0013011' => 'camsi', 'CSS0017147' => 'camsi', 'CSS0022970' => 'camsi', 'CSS0025655' => 'camsi', 'CSS0028665' => 'camsi', 'CSS0029117' => 'camsi', 'CSS0032024' => 'camsi', 'CSS0039681' => 'camsi', 'CSS0046516' => 'camsi', 'CSS0050307' => 'camsi', 'DCAR_005871' => 'dca', 'DCAR_007342' => 'dca', 'DCAR_024228' => 'dca', 'DCAR_027277' => 'dca', 'DCAR_030718' => 'dca', 'Dinv20287' => 'din', 'Dinv22461' => 'din', 'Dinv22464' => 'din', 'Dinv29912' => 'din', 'Dinv29913' => 'din', 'Dinv34580' => 'din', 'Dinv34582' => 'din', 'Dinv44632' => 'din', 'Duzib052G0266' => 'dzi', 'Duzib133G0907' => 'dzi', 'Duzib133G1034' => 'dzi', 'Duzib138G0207' => 'dzi', 'Duzib138G0491' => 'dzi', 'Duzib151G0812' => 'dzi', 'Duzib151G1166' => 'dzi', 'Duzib168G0192' => 'dzi', 'Duzib211G0077' => 'dzi', 'Duzib212G0429' => 'dzi', 'Duzib212G0472' => 'dzi', 'ECA233G2617' => 'eca', 'ECA236G4188' => 'eca', 'ECA240G0936' => 'eca', 'ECA240G1129' => 'eca', 'ECA247G0623' => 'eca', 'EL10Ac5g10451' => 'bvu', 'EL10Ac5g10453' => 'bvu', 'EL10Ac5g10894' => 'bvu', 'Eucgr.H00192' => 'egr', 'Eucgr.H00193' => 'egr', 'Eucgr.H00194' => 'egr', 'Eucgr.J01562' => 'egr', 'Eucgr.K03301' => 'egr', 'FAN02G0632' => 'fan', 'FAN05G5378' => 'fan', 'FAN09G3247' => 'fan', 'FAN12G0435' => 'fan', 'FAN12G2426' => 'fan', 'FAN14G1707' => 'fan', 'FAN14G4725' => 'fan', 'FAN15G2071' => 'fan', 'FAN17G3065' => 'fan', 'FAN19G1376' => 'fan', 'FAN20G0354' => 'fan', 'FAN20G2429' => 'fan', 'FAN20G2658' => 'fan', 'FAN24G2343' => 'fan', 'FAN27G2362' => 'fan', 'FAN28G1765' => 'fan', 'FvH4_1g16020' => 'fve', 'FvH4_2g04890' => 'fve', 'FvH4_2g22270' => 'fve', 'FvH4_4g02630' => 'fve', 'FvH4_4g02640' => 'fve', 'FvH4_6g02650' => 'fve', 'Glyma.02G140600' => 'gma', 'Glyma.03G159900' => 'gma', 'Glyma.05G234800' => 'gma', 'Glyma.07G269600' => 'gma', 'Glyma.08G042300' => 'gma', 'Glyma.10G033500' => 'gma', 'Glyma.10G185200' => 'gma', 'Glyma.17G004300' => 'gma', 'Glyma.19G161900' => 'gma', 'Glyma.20G205100' => 'gma', 'Glyma.20G205200' => 'gma', 'Gohir.A01G139101' => 'ghi', 'Gohir.A02G035600' => 'ghi', 'Gohir.A02G117901' => 'ghi', 'Gohir.A07G210100' => 'ghi', 'Gohir.A07G210200' => 'ghi', 'Gohir.A08G061100' => 'ghi', 'Gohir.A09G223000' => 'ghi', 'Gohir.A09G223100' => 'ghi', 'Gohir.A10G113900' => 'ghi', 'Gohir.A10G114000' => 'ghi', 'Gohir.D02G042300' => 'ghi', 'Gohir.D07G216100' => 'ghi', 'Gohir.D07G216200' => 'ghi', 'Gohir.D08G070400' => 'ghi', 'Gohir.D09G225000' => 'ghi', 'Gohir.D09G225100' => 'ghi', 'Gohir.D10G152300' => 'ghi', 'Gohir.D10G153200' => 'ghi', 'Gohir.D11G133701' => 'ghi', 'Gorai.004G074100' => 'gra', 'Gorai.005G046800' => 'gra', 'Gorai.006G246500' => 'gra', 'Gorai.006G246600' => 'gra', 'Gorai.007G142900' => 'gra', 'Gorai.011G171000' => 'gra', 'Gorai.011G171100' => 'gra', 'Gorai.013G104300' => 'gra', 'Gorai.013G104400' => 'gra', 'GSVIVG01000754001' => 'vvi', 'GSVIVG01000756001' => 'vvi', 'GSVIVG01010903001' => 'vvi', 'GSVIVG01017623001' => 'vvi', 'GSVIVG01018113001' => 'vvi', 'GSVIVG01018116001' => 'vvi', 'GSVIVG01018118001' => 'vvi', 'HanXRQChr03g0076211' => 'han', 'HanXRQChr03g0092431' => 'han', 'HanXRQChr03g0092441' => 'han', 'HanXRQChr03g0092591' => 'han', 'HanXRQChr03g0092671' => 'han', 'HanXRQChr03g0092681' => 'han', 'HanXRQChr03g0092691' => 'han', 'HanXRQChr03g0092701' => 'han', 'HanXRQChr03g0092721' => 'han', 'HanXRQChr03g0092731' => 'han', 'HanXRQChr04g0113681' => 'han', 'HanXRQChr10g0281371' => 'han', 'HanXRQChr11g0337141' => 'han', 'HanXRQChr13g0424521' => 'han', 'HanXRQChr13g0424531' => 'han', 'HanXRQChr13g0424541' => 'han', 'HanXRQChr16g0498221' => 'han', 'Haze_04377' => 'cav', 'Haze_11298' => 'cav', 'Haze_24547' => 'cav', 'Haze_24550' => 'cav', 'Haze_26587' => 'cav', 'Hma1.2p1_0650F.1_g195410' => 'hma', 'Hma1.2p1_0893F.1_g233470' => 'hma', 'HPP92_006508' => 'vpl', 'HPP92_024780' => 'vpl', 'Hund02688' => 'sun', 'Hund09380' => 'sun', 'Hund09381' => 'sun', 'Hund09832' => 'sun', 'Hund09833' => 'sun', 'Hund11351' => 'sun', 'Hund11513' => 'sun', 'Lalb_Chr06g0162591' => 'lal', 'Lalb_Chr06g0162601' => 'lal', 'Lalb_Chr06g0169321' => 'lal', 'Lalb_Chr09g0330951' => 'lal', 'Lalb_Chr16g0387631' => 'lal', 'Lalb_Chr21g0306241' => 'lal', 'Lalb_Chr25g0290051' => 'lal', 'Lalb_Chr25g0290061' => 'lal', 'Lalb_Chr25g0290071' => 'lal', 'Lj1g0003876' => 'lja', 'Lj1P1207T36' => 'lonja', 'Lj2C1156G12' => 'lonja', 'Lj3A793G39' => 'lonja', 'Lj3C580G2' => 'lonja', 'Lj3C780G2' => 'lonja', 'Lj3C780T4' => 'lonja', 'Lj3C793G9' => 'lonja', 'Lj4g0012960' => 'lja', 'Lj5g0021252' => 'lja', 'Lj5g0021484' => 'lja', 'Lj5g0024528' => 'lja', 'Lj6A399T12' => 'lonja', 'Lj6A656G65' => 'lonja', 'Lsat_1_v5_gn_3_125500' => 'lsa', 'Lsat_1_v5_gn_3_125540' => 'lsa', 'Lsat_1_v5_gn_5_72701' => 'lsa', 'Lsat_1_v5_gn_8_91560' => 'lsa', 'Lsat_1_v5_gn_9_9640' => 'lsa', 'Manes.01G200600' => 'mes', 'Manes.01G200700' => 'mes', 'Manes.03G168900' => 'mes', 'Manes.03G169000' => 'mes', 'Manes.05G085801' => 'mes', 'Manes.05G086200' => 'mes', 'Manes.15G036700' => 'mes', 'Manes.15G036900' => 'mes', 'Mapoly0004s0172' => 'mpo', 'Mapoly0023s0001' => 'mpo', 'Mapoly0142s0012' => 'mpo', 'MBI01_g32854_MAGBIO' => 'mbi', 'MBI11_g24427_MAGBIO' => 'mbi', 'MBI11_g47319_MAGBIO' => 'mbi', 'MCO01G433' => 'mco', 'MD00G1187800' => 'mdo', 'MD04G1226500' => 'mdo', 'MD05G1203900' => 'mdo', 'MD10G1191100' => 'mdo', 'MD12G1243500' => 'mdo', 'MD13G1207000' => 'mdo', 'MD13G1207100' => 'mdo', 'MD16G1208600' => 'mdo', 'Medtr1g050352' => 'mtr', 'Medtr1g070385' => 'mtr', 'Medtr1g070450' => 'mtr', 'Medtr1g075200' => 'mtr', 'Medtr1g075250' => 'mtr', 'Medtr1g075260' => 'mtr', 'Medtr1g475250' => 'mtr', 'Medtr4g075450' => 'mtr', 'Medtr7g096300' => 'mtr', 'Medtr8g105110' => 'mtr', 'MELO3C006470.2' => 'cme', 'MELO3C006471.2' => 'cme', 'MELO3C020772.2' => 'cme', 'MELO3C026780.2' => 'cme', 'MELO3C026781.2' => 'cme', 'Migut.D00390' => 'egut', 'Migut.G00435' => 'egut', 'Migut.G00436' => 'egut', 'Migut.G00718' => 'egut', 'MSTRG.21891' => 'ama', 'MSTRG.26910' => 'ama', 'MSTRG.4099' => 'ama', 'MSTRG.9925' => 'ama', 'Nitab4.5_0000165g0010' => 'nta', 'Nitab4.5_0000209g0180' => 'nta', 'Nitab4.5_0000244g0440' => 'nta', 'Nitab4.5_0000525g0220' => 'nta', 'Nitab4.5_0001597g0020' => 'nta', 'Nitab4.5_0001878g0040' => 'nta', 'Nitab4.5_0001878g0060' => 'nta', 'Nitab4.5_0002838g0100' => 'nta', 'Nitab4.5_0002838g0120' => 'nta', 'Nitab4.5_0004798g0030' => 'nta', 'Nitab4.5_0005420g0010' => 'nta', 'Nitab4.5_0005507g0010' => 'nta', 'Nitab4.5_0005574g0020' => 'nta', 'Nitab4.5_0005838g0010' => 'nta', 'Nitab4.5_0010580g0020' => 'nta', 'Nn1g02599' => 'nnu', 'Nn1g02608' => 'nnu', 'Nn3g17742' => 'nnu', 'Nn3g19534' => 'nnu', 'Nn3g19535' => 'nnu', 'Oeu008790.1' => 'oeu', 'Oeu008792.1' => 'oeu', 'Oeu032590.1' => 'oeu', 'Oeu035349.1' => 'oeu', 'Oeu049791.1' => 'oeu', 'Os01g0774500' => 'osa', 'Os03g0628800' => 'osa', 'Os03g0798600' => 'osa', 'Os05g0508800' => 'osa', 'Peaxi162Scf00036g02018' => 'pax', 'Peaxi162Scf00578g00032' => 'pax', 'Peaxi162Scf00578g00317' => 'pax', 'Peaxi162Scf00785g00114' => 'pax', 'Peaxi162Scf00813g00119' => 'pax', 'Peaxi162Scf00906g00227' => 'pax', 'PGR004G0875' => 'pgr', 'PGR004G2424' => 'pgr', 'PGR031G1239' => 'pgr', 'PGR031G2474' => 'pgr', 'PGR044G0423' => 'pgr', 'PGSC0003DMG400001128' => 'stu', 'PGSC0003DMG400007336' => 'stu', 'PGSC0003DMG400016318' => 'stu', 'PGSC0003DMG400016319' => 'stu', 'PGSC0003DMG400018074' => 'stu', 'Phvul.001G157700' => 'pvu', 'Phvul.002G148550' => 'pvu', 'Phvul.002G320200' => 'pvu', 'Phvul.003G089200' => 'pvu', 'Phvul.007G126000' => 'pvu', 'Phvul.007G126100' => 'pvu', 'Phvul.007G178000' => 'pvu', 'Phvul.007G178200' => 'pvu', 'Potri.002G043000' => 'ptr', 'Potri.002G043200' => 'ptr', 'Potri.003G123750' => 'ptr', 'Potri.005G055401' => 'ptr', 'Potri.005G219700' => 'ptr', 'Potri.005G220000' => 'ptr', 'Potri.008G161901' => 'ptr', 'Potri.008G162000' => 'ptr', 'Potri.008G162400' => 'ptr', 'Potri.010G076900' => 'ptr', 'Pp3c12_9180' => 'ppa', 'Pp3c13_19770' => 'ppa', 'Pp3c14_22950' => 'ppa', 'Pp3c16_12160' => 'ppa', 'Pp3c27_7820' => 'ppa', 'Pp3c2_3490' => 'ppa', 'Pp3c3_23700' => 'ppa', 'Pp3c3_36520' => 'ppa', 'Pp3c4_15250' => 'ppa', 'PRCOL_00007002' => 'pco', 'Prupe.1G030600' => 'ppe', 'Prupe.1G030700' => 'ppe', 'Prupe.6G345200' => 'ppe', 'Prupe.8G230300' => 'ppe', 'Prupe.8G230500' => 'ppe', 'Psat3g059600' => 'psa', 'Psat5g200920' => 'psa', 'Psat6g056440' => 'psa', 'Psat6g057360' => 'psa', 'Psat6g134120' => 'psa', 'Psat6g134160' => 'psa', 'Psat7g008640' => 'psa', 'Psat7g185240' => 'psa', 'PSO017G1330' => 'pso', 'PSO063G6097' => 'pso', 'PSO170G0835' => 'pso', 'PSO170G2499' => 'pso', 'PSO210G5058' => 'pso', 'PSO210G6154' => 'pso', 'PSO585G0031' => 'pso', 'PSO832G0264' => 'pso', 'PSO832G4288' => 'pso', 'QL03p027355' => 'qlo', 'QL03p027430' => 'qlo', 'QL04p081380' => 'qlo', 'QL06p015642' => 'qlo', 'QL06p015650' => 'qlo', 'QL06p015686' => 'qlo', 'QL12p042927' => 'qlo', 'QL93p1863_0035' => 'qlo', 'RcHm_v2.0_Chr3g0450581' => 'rch', 'RcHm_v2.0_Chr4g0390371' => 'rch', 'RcHm_v2.0_Chr4g0390381' => 'rch', 'RcHm_v2.0_Chr4g0390491' => 'rch', 'RcHm_v2.0_Chr4g0390501' => 'rch', 'RcHm_v2.0_Chr6g0289231' => 'rch', 'Rhsim04G0190400' => 'rsi', 'Rhsim04G0190500' => 'rsi', 'Rhsim04G0190600' => 'rsi', 'Rhsim13G0031400' => 'rsi', 'Rhsim13G0165600' => 'rsi', 'RhsimUnG0114600' => 'rsi', 'RhsimUnG0114700' => 'rsi', 'Sabra02G0034800' => 'sbr', 'Sabra02G0035100' => 'sbr', 'Sabra05G0168600' => 'sbr', 'Sabra05G0168800' => 'sbr', 'Sabra08G0123700' => 'sbr', 'Sabra10G0031900' => 'sbr', 'Sabra13G0039000' => 'sbr', 'SalBow2G0782' => 'sbo', 'SalBow2G1403' => 'sbo', 'SalBow4G0074' => 'sbo', 'SalBow4G2635' => 'sbo', 'SalBow5G3010' => 'sbo', 'Sc05g0000870' => 'sci', 'Sc05g0000890' => 'sci', 'Sc13g0005000' => 'sci', 'Sc13g0005030' => 'sci', 'Sc19g0003790' => 'sci', 'Sc19g0003800' => 'sci', 'Sed0003467' => 'sed', 'Sed0009355' => 'sed', 'Sed0009894' => 'sed', 'Sed0011972' => 'sed', 'Sed0021483' => 'sed', 'Sed0021750' => 'sed', 'Sed0026279' => 'sed', 'SEGI_05312' => 'sgi', 'SEGI_10112' => 'sgi', 'SEGI_15835' => 'sgi', 'SEGI_30386' => 'sgi', 'SEGI_34122' => 'sgi', 'SEGI_35063' => 'sgi', 'SGA_v2.0_scaffold101G29794' => 'sas', 'SGA_v2.0_scaffold1G00573' => 'sas', 'SGA_v2.0_scaffold79G25637' => 'sas', 'SGA_v2.0_scaffold88G27283' => 'sas', 'SGA_v2.0_scaffold88G27285' => 'sas', 'SGA_v2.0_scaffold88G27331' => 'sas', 'SHI09937' => 'shi', 'SMO119G0302' => 'smo', 'SMO137G0231' => 'smo', 'SMO367G1151' => 'smo', 'Solyc02g082000.3' => 'sly', 'Solyc06g031670.3' => 'sly', 'Solyc06g053810.3' => 'sly', 'Solyc07g025457.1' => 'sly', 'Solyc08g059740.1' => 'sly', 'Solyc08g059750.3' => 'sly', 'Solyc09g083370.3' => 'sly', 'Solyc12g038950.3' => 'sly', 'Sopen02g026630' => 'spe', 'Sopen06g018930' => 'spe', 'Sopen06g018940' => 'spe', 'Sopen08g009460' => 'spe', 'Sopen09g032290' => 'spe', 'Sp1g03080' => 'spa', 'Sp1g03090' => 'spa', 'Sp1g05480' => 'spa', 'Sp2g07860' => 'spa', 'Sp2g08430' => 'spa', 'Sp2g08440' => 'spa', 'Sp2g26200' => 'spa', 'Sp4g13170' => 'spa', 'Sp6g33840' => 'spa', 'SpUn1204_0010' => 'spa', 'TAR365G0908' => 'tar', 'TAR381G1270' => 'tar', 'TAR381G1651' => 'tar', 'TAR625G1131' => 'tar', 'TAR633G0962' => 'tar', 'TAR633G1729' => 'tar', 'TAR633G1864' => 'tar', 'TAR636G0221' => 'tar', 'TAR636G0314' => 'tar', 'TAR636G3202' => 'tar', 'THA.LOC104800805' => 'tha', 'THA.LOC104801096' => 'tha', 'THA.LOC104801555' => 'tha', 'THA.LOC104808491' => 'tha', 'THA.LOC104808595' => 'tha', 'THA.LOC104815985' => 'tha', 'THA.LOC104822250' => 'tha', 'THA.LOC104826071' => 'tha', 'Thecc.01G265200' => 'tca', 'Thecc.01G265300' => 'tca', 'Thecc.01G265700' => 'tca', 'Thecc.03G109100' => 'tca', 'Thecc.04G245900' => 'tca', 'Thecc.04G246000' => 'tca', 'Thhalv10003334m.g' => 'esa', 'Thhalv10005508m.g' => 'esa', 'Thhalv10005643m.g' => 'esa', 'Thhalv10007316m.g' => 'esa', 'Thhalv10009006m.g' => 'esa', 'Thhalv10009309m.g' => 'esa', 'Thhalv10014917m.g' => 'esa', 'Thhalv10014919m.g' => 'esa', 'Thhalv10015393m.g' => 'esa', 'Thhalv10016515m.g' => 'esa', 'Thhalv10029242m.g' => 'esa', 'TPR.G16654' => 'tpr', 'TPR.G20589' => 'tpr', 'TPR.G23029' => 'tpr', 'TPR.G27731' => 'tpr', 'TPR.G28889' => 'tpr', 'TPR.G28899' => 'tpr', 'TPR.G30846' => 'tpr', 'TPR.G5452' => 'tpr', 'TPR.G5713' => 'tpr', 'TPR.G9046' => 'tpr', 'TPR.G9061' => 'tpr', 'TWI09G1075' => 'twi', 'TWI12G0806' => 'twi', 'TWI18G0108' => 'twi', 'TWI53G1361' => 'twi', 'TWI73G0185' => 'twi', 'TWI73G0427' => 'twi', 'unitig_37.g12001' => 'ugi', 'unitig_747.g21660' => 'ugi', 'unitig_748.g7232' => 'ugi', 'unitig_748.g7315' => 'ugi', 'unitig_85.g27262' => 'ugi', 'unitig_92.g28220' => 'ugi', 'vmacro02632' => 'vma', 'vmacro08410' => 'vma', 'vmacro08411' => 'vma', 'vmacro15407' => 'vma', 'VMungo0251G3619' => 'vmu', 'VMungo0720G1204' => 'vmu', 'VMungo0720G1918' => 'vmu', 'VMungo0720G2387' => 'vmu', 'VMungo0720G2961' => 'vmu', 'VMungo1215G2154' => 'vmu', 'VMungo1383G2411' => 'vmu', 'Zm00001eb051130' => 'zma', 'Zm00001eb116830' => 'zma', 'Zm00001eb116850' => 'zma', 'Zm00001eb151740' => 'zma', 'Zm00001eb292360' => 'zma', 'Zm00001eb301640' => 'zma' ) $gf_id = 'HOM05D000856' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000856' ) $data_identifier = 'HOM05D000856' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 13, 'ath' => (int) 10, 'atr' => (int) 1, 'acertr' => (int) 8, 'cqu' => (int) 6, 'bca' => (int) 21, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 11, 'car' => (int) 9, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 8, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 5, 'fan' => (int) 16, 'fve' => (int) 6, 'gma' => (int) 11, 'ghi' => (int) 19, 'gra' => (int) 9, 'vvi' => (int) 7, 'han' => (int) 17, 'cav' => (int) 5, 'hma' => (int) 2, 'vpl' => (int) 2, 'sun' => (int) 7, 'lal' => (int) 9, 'lja' => (int) 5, 'lonja' => (int) 9, 'lsa' => (int) 5, 'mes' => (int) 8, 'mpo' => (int) 3, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 10, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 15, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 9, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 9, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 6, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 5, 'spa' => (int) 10, 'tar' => (int) 10, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 11, 'tpr' => (int) 11, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 4, 'vmu' => (int) 7, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb301640' $species_info = array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ) $local_species = 'cqu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000856', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p00010' => 'bna', 'A03p04160' => 'bna', 'A03p17160' => 'bna', 'A04p23370' => 'bna', 'A05p14860' => 'bna', 'A08p37020' => 'bna', 'A09p08050' => 'bna', 'A09p66800' => 'bna', 'A09p67940' => 'bna', 'A10p02680' => 'bna', 'A10p05320' => 'bna', 'Aa31LG1G20560' => 'aar', 'Aa31LG1G20610' => 'aar', 'Aa31LG1G7810' => 'aar', 'Aa31LG5G3590' => 'aar', 'Aa31LG5G6140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3819' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4683' => 'aag', 'Actinidia04480' => 'ach', 'Actinidia05466' => 'ach', 'Actinidia08445' => 'ach', 'Actinidia21170' => 'ach', 'Actinidia24812' => 'ach', 'Actinidia24951' => 'ach', 'Actinidia40088' => 'ach', 'Ah.02g111660' => 'amhyb', 'Ah.11g048900' => 'amhyb', 'Ah.11g049910' => 'amhyb', 'AL1G13870' => 'aly', 'AL1G13880' => 'aly', 'AL1G16760' => 'aly', 'AL390U10020' => 'aly', 'AL4G25520' => 'aly', 'AL6G19890' => 'aly', 'AL6G19900' => 'aly', 'AL6G19910' => 'aly', 'AL8G40100' => 'aly', 'Aqoxy2G03562' => 'aox', 'Aqoxy5G00316' => 'aox', 'Aqoxy5G00926' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1628KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1H403S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2FU6SJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.882I6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8YRY2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YN1SN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AF70II' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZA8L1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F916KL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHRD8H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KTZ8QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S22EMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8M29T' => 'arhy', 'AT1G04270' => 'ath', 'AT1G04280' => 'ath', 'AT1G06750' => 'ath', 'AT1G33850' => 'ath', 'AT2G30630' => 'ath', 'AT5G09490' => 'ath', 'AT5G09500' => 'ath', 'AT5G09510' => 'ath', 'AT5G43640' => 'ath', 'AT5G63070' => 'ath', 'ATR0605G315' => 'atr', 'Atru.chr11.175' => 'acertr', 'Atru.chr11.653' => 'acertr', 'Atru.chr3.1616' => 'acertr', 'Atru.chr4.2230' => 'acertr', 'Atru.chr4.2232' => 'acertr', 'Atru.chr5.1598' => 'acertr', 'Atru.chr5.1600' => 'acertr', 'Atru.chr5.2188' => 'acertr', 'AUR62008326' => 'cqu', 'AUR62011922' => 'cqu', 'AUR62011924' => 'cqu', 'AUR62021771' => 'cqu', 'AUR62032237' => 'cqu', 'AUR62032240' => 'cqu', 'BcaB01g05572' => 'bca', 'BcaB02g10337' => 'bca', 'BcaB04g19944' => 'bca', 'BcaB05g21548' => 'bca', 'BcaB05g21549' => 'bca', 'BcaB05g23227' => 'bca', 'BcaB06g26256' => 'bca', 'BcaB06g26257' => 'bca', 'BcaB06g28379' => 'bca', 'BcaC02g11159' => 'bca', 'BcaC03g13258' => 'bca', 'BcaC03g13259' => 'bca', 'BcaC05g24456' => 'bca', 'BcaC05g24457' => 'bca', 'BcaC07g36922' => 'bca', 'BcaC07g36923' => 'bca', 'BcaC07g42050' => 'bca', 'BcaC07g42176' => 'bca', 'BcaC07g42195' => 'bca', 'BcaC07g42196' => 'bca', 'BcaNung06674' => 'bca', 'BolC2t06351H' => 'bol', 'BolC2t06352H' => 'bol', 'BolC3t12993H' => 'bol', 'BolC4t23525H' => 'bol', 'BolC4t27475H' => 'bol', 'BolC5t29025H' => 'bol', 'BolC5t29026H' => 'bol', 'BolC8t46898H' => 'bol', 'BolC8t46899H' => 'bol', 'BolC8t52630H' => 'bol', 'BolC8t52765H' => 'bol', 'BolC9t53824H' => 'bol', 'BraA03t09760Z' => 'bra', 'BraA03t10990Z' => 'bra', 'BraA05t20413Z' => 'bra', 'BraA08t35602Z' => 'bra', 'BraA09t36458Z' => 'bra', 'BraA09t42018Z' => 'bra', 'BraA09t42129Z' => 'bra', 'BraA10t42536Z' => 'bra', 'BraA10t42537Z' => 'bra', 'C01p10690' => 'bna', 'C02p03890' => 'bna', 'C02p03900' => 'bna', 'C03p04620' => 'bna', 'C04p19870' => 'bna', 'C04p59670' => 'bna', 'C05p02460' => 'bna', 'C05p02470' => 'bna', 'C08p00980' => 'bna', 'C08p00990' => 'bna', 'C08p51030' => 'bna', 'C08p52360' => 'bna', 'C09p09120' => 'bna', 'CAN.G19.15' => 'can', 'CAN.G251.10' => 'can', 'CAN.G251.9' => 'can', 'CAN.G398.24' => 'can', 'CAN.G410.32' => 'can', 'CAN.G881.2' => 'can', 'CANSAT01G3025' => 'cansat', 'CANSAT78G1211' => 'cansat', 'CANSAT78G1218' => 'cansat', 'CANSAT78G1521' => 'cansat', 'CANSAT78G1670' => 'cansat', 'CARHR003600' => 'chi', 'CARHR003610' => 'chi', 'CARHR006290' => 'chi', 'CARHR006430' => 'chi', 'CARHR124110' => 'chi', 'CARHR203870' => 'chi', 'CARHR203880' => 'chi', 'CARHR203890' => 'chi', 'CARHR276880' => 'chi', 'Carub.0001s0346' => 'cru', 'Carub.0001s0347' => 'cru', 'Carub.0001s0607' => 'cru', 'Carub.0003s2768' => 'cru', 'Carub.0003s2769' => 'cru', 'Carub.0004s1178' => 'cru', 'Carub.0006s0806' => 'cru', 'Carub.0006s0807' => 'cru', 'Carub.0006s0808' => 'cru', 'Carub.0008s0501' => 'cru', 'Carub.0008s2379' => 'cru', 'Ca_08655_v3' => 'car', 'Ca_08922_v3' => 'car', 'Ca_08923_v3' => 'car', 'Ca_09119_v3' => 'car', 'Ca_09703_v3' => 'car', 'Ca_09705_v3' => 'car', 'Ca_09835_v3' => 'car', 'Ca_26403_v3' => 'car', 'Ca_30719_v3' => 'car', 'CBR_g17958' => 'cbr', 'CBR_g40516' => 'cbr', 'Cc00_g05350' => 'ccan', 'Cc01_g18690' => 'ccan', 'Cc03_g04830' => 'ccan', 'Cc03_g04850' => 'ccan', 'CDE02G4469' => 'cde', 'CDE06G0883' => 'cde', 'CDE06G1295' => 'cde', 'CDE06G1390' => 'cde', 'CDE07G0584' => 'cde', 'CDE07G1084' => 'cde', 'CDE08G1259' => 'cde', 'Cfa002341' => 'cfa', 'Cfa024337' => 'cfa', 'Ciclev10004749m.g' => 'ccl', 'Ciclev10006127m.g' => 'ccl', 'Ciclev10019720m.g' => 'ccl', 'Ciclev10022652m.g' => 'ccl', 'CiPaw.01G190400' => 'cil', 'CiPaw.01G190500' => 'cil', 'CiPaw.02G116400' => 'cil', 'CiPaw.02G116500' => 'cil', 'CiPaw.04G183000' => 'cil', 'CiPaw.04G183300' => 'cil', 'ClCG05G004610' => 'cla', 'ClCG05G004620' => 'cla', 'ClCG06G006730' => 'cla', 'ClCG06G006740' => 'cla', 'ClCG11G003690' => 'cla', 'COL.COLO4_08276' => 'col', 'COL.COLO4_08277' => 'col', 'COL.COLO4_15787' => 'col', 'COL.COLO4_15789' => 'col', 'Cpa.g.c44815' => 'cpa', 'Cpa.g.sc52.144' => 'cpa', 'Cpa.g.sc58.46' => 'cpa', 'Cpa.g.sc58.47' => 'cpa', 'Cre08.g360900' => 'cre', 'CsaV3_2G013030' => 'csa', 'CsaV3_2G013050' => 'csa', 'CsaV3_2G015620' => 'csa', 'CsaV3_3G012590' => 'csa', 'CsaV3_3G012600' => 'csa', 'CSS0001641' => 'camsi', 'CSS0008310' => 'camsi', 'CSS0013011' => 'camsi', 'CSS0017147' => 'camsi', 'CSS0022970' => 'camsi', 'CSS0025655' => 'camsi', 'CSS0028665' => 'camsi', 'CSS0029117' => 'camsi', 'CSS0032024' => 'camsi', 'CSS0039681' => 'camsi', 'CSS0046516' => 'camsi', 'CSS0050307' => 'camsi', 'DCAR_005871' => 'dca', 'DCAR_007342' => 'dca', 'DCAR_024228' => 'dca', 'DCAR_027277' => 'dca', 'DCAR_030718' => 'dca', 'Dinv20287' => 'din', 'Dinv22461' => 'din', 'Dinv22464' => 'din', 'Dinv29912' => 'din', 'Dinv29913' => 'din', 'Dinv34580' => 'din', 'Dinv34582' => 'din', 'Dinv44632' => 'din', 'Duzib052G0266' => 'dzi', 'Duzib133G0907' => 'dzi', 'Duzib133G1034' => 'dzi', 'Duzib138G0207' => 'dzi', 'Duzib138G0491' => 'dzi', 'Duzib151G0812' => 'dzi', 'Duzib151G1166' => 'dzi', 'Duzib168G0192' => 'dzi', 'Duzib211G0077' => 'dzi', 'Duzib212G0429' => 'dzi', 'Duzib212G0472' => 'dzi', 'ECA233G2617' => 'eca', 'ECA236G4188' => 'eca', 'ECA240G0936' => 'eca', 'ECA240G1129' => 'eca', 'ECA247G0623' => 'eca', 'EL10Ac5g10451' => 'bvu', 'EL10Ac5g10453' => 'bvu', 'EL10Ac5g10894' => 'bvu', 'Eucgr.H00192' => 'egr', 'Eucgr.H00193' => 'egr', 'Eucgr.H00194' => 'egr', 'Eucgr.J01562' => 'egr', 'Eucgr.K03301' => 'egr', 'FAN02G0632' => 'fan', 'FAN05G5378' => 'fan', 'FAN09G3247' => 'fan', 'FAN12G0435' => 'fan', 'FAN12G2426' => 'fan', 'FAN14G1707' => 'fan', 'FAN14G4725' => 'fan', 'FAN15G2071' => 'fan', 'FAN17G3065' => 'fan', 'FAN19G1376' => 'fan', 'FAN20G0354' => 'fan', 'FAN20G2429' => 'fan', 'FAN20G2658' => 'fan', 'FAN24G2343' => 'fan', 'FAN27G2362' => 'fan', 'FAN28G1765' => 'fan', 'FvH4_1g16020' => 'fve', 'FvH4_2g04890' => 'fve', 'FvH4_2g22270' => 'fve', 'FvH4_4g02630' => 'fve', 'FvH4_4g02640' => 'fve', 'FvH4_6g02650' => 'fve', 'Glyma.02G140600' => 'gma', 'Glyma.03G159900' => 'gma', 'Glyma.05G234800' => 'gma', 'Glyma.07G269600' => 'gma', 'Glyma.08G042300' => 'gma', 'Glyma.10G033500' => 'gma', 'Glyma.10G185200' => 'gma', 'Glyma.17G004300' => 'gma', 'Glyma.19G161900' => 'gma', 'Glyma.20G205100' => 'gma', 'Glyma.20G205200' => 'gma', 'Gohir.A01G139101' => 'ghi', 'Gohir.A02G035600' => 'ghi', 'Gohir.A02G117901' => 'ghi', 'Gohir.A07G210100' => 'ghi', 'Gohir.A07G210200' => 'ghi', 'Gohir.A08G061100' => 'ghi', 'Gohir.A09G223000' => 'ghi', 'Gohir.A09G223100' => 'ghi', 'Gohir.A10G113900' => 'ghi', 'Gohir.A10G114000' => 'ghi', 'Gohir.D02G042300' => 'ghi', 'Gohir.D07G216100' => 'ghi', 'Gohir.D07G216200' => 'ghi', 'Gohir.D08G070400' => 'ghi', 'Gohir.D09G225000' => 'ghi', 'Gohir.D09G225100' => 'ghi', 'Gohir.D10G152300' => 'ghi', 'Gohir.D10G153200' => 'ghi', 'Gohir.D11G133701' => 'ghi', 'Gorai.004G074100' => 'gra', 'Gorai.005G046800' => 'gra', 'Gorai.006G246500' => 'gra', 'Gorai.006G246600' => 'gra', 'Gorai.007G142900' => 'gra', 'Gorai.011G171000' => 'gra', 'Gorai.011G171100' => 'gra', 'Gorai.013G104300' => 'gra', 'Gorai.013G104400' => 'gra', 'GSVIVG01000754001' => 'vvi', 'GSVIVG01000756001' => 'vvi', 'GSVIVG01010903001' => 'vvi', 'GSVIVG01017623001' => 'vvi', 'GSVIVG01018113001' => 'vvi', 'GSVIVG01018116001' => 'vvi', 'GSVIVG01018118001' => 'vvi', 'HanXRQChr03g0076211' => 'han', 'HanXRQChr03g0092431' => 'han', 'HanXRQChr03g0092441' => 'han', 'HanXRQChr03g0092591' => 'han', 'HanXRQChr03g0092671' => 'han', 'HanXRQChr03g0092681' => 'han', 'HanXRQChr03g0092691' => 'han', 'HanXRQChr03g0092701' => 'han', 'HanXRQChr03g0092721' => 'han', 'HanXRQChr03g0092731' => 'han', 'HanXRQChr04g0113681' => 'han', 'HanXRQChr10g0281371' => 'han', 'HanXRQChr11g0337141' => 'han', 'HanXRQChr13g0424521' => 'han', 'HanXRQChr13g0424531' => 'han', 'HanXRQChr13g0424541' => 'han', 'HanXRQChr16g0498221' => 'han', 'Haze_04377' => 'cav', 'Haze_11298' => 'cav', 'Haze_24547' => 'cav', 'Haze_24550' => 'cav', 'Haze_26587' => 'cav', 'Hma1.2p1_0650F.1_g195410' => 'hma', 'Hma1.2p1_0893F.1_g233470' => 'hma', 'HPP92_006508' => 'vpl', 'HPP92_024780' => 'vpl', 'Hund02688' => 'sun', 'Hund09380' => 'sun', 'Hund09381' => 'sun', 'Hund09832' => 'sun', 'Hund09833' => 'sun', 'Hund11351' => 'sun', 'Hund11513' => 'sun', 'Lalb_Chr06g0162591' => 'lal', 'Lalb_Chr06g0162601' => 'lal', 'Lalb_Chr06g0169321' => 'lal', 'Lalb_Chr09g0330951' => 'lal', 'Lalb_Chr16g0387631' => 'lal', 'Lalb_Chr21g0306241' => 'lal', 'Lalb_Chr25g0290051' => 'lal', 'Lalb_Chr25g0290061' => 'lal', 'Lalb_Chr25g0290071' => 'lal', 'Lj1g0003876' => 'lja', 'Lj1P1207T36' => 'lonja', 'Lj2C1156G12' => 'lonja', 'Lj3A793G39' => 'lonja', 'Lj3C580G2' => 'lonja', 'Lj3C780G2' => 'lonja', 'Lj3C780T4' => 'lonja', 'Lj3C793G9' => 'lonja', 'Lj4g0012960' => 'lja', 'Lj5g0021252' => 'lja', 'Lj5g0021484' => 'lja', 'Lj5g0024528' => 'lja', 'Lj6A399T12' => 'lonja', 'Lj6A656G65' => 'lonja', 'Lsat_1_v5_gn_3_125500' => 'lsa', 'Lsat_1_v5_gn_3_125540' => 'lsa', 'Lsat_1_v5_gn_5_72701' => 'lsa', 'Lsat_1_v5_gn_8_91560' => 'lsa', 'Lsat_1_v5_gn_9_9640' => 'lsa', 'Manes.01G200600' => 'mes', 'Manes.01G200700' => 'mes', 'Manes.03G168900' => 'mes', 'Manes.03G169000' => 'mes', 'Manes.05G085801' => 'mes', 'Manes.05G086200' => 'mes', 'Manes.15G036700' => 'mes', 'Manes.15G036900' => 'mes', 'Mapoly0004s0172' => 'mpo', 'Mapoly0023s0001' => 'mpo', 'Mapoly0142s0012' => 'mpo', 'MBI01_g32854_MAGBIO' => 'mbi', 'MBI11_g24427_MAGBIO' => 'mbi', 'MBI11_g47319_MAGBIO' => 'mbi', 'MCO01G433' => 'mco', 'MD00G1187800' => 'mdo', 'MD04G1226500' => 'mdo', 'MD05G1203900' => 'mdo', 'MD10G1191100' => 'mdo', 'MD12G1243500' => 'mdo', 'MD13G1207000' => 'mdo', 'MD13G1207100' => 'mdo', 'MD16G1208600' => 'mdo', 'Medtr1g050352' => 'mtr', 'Medtr1g070385' => 'mtr', 'Medtr1g070450' => 'mtr', 'Medtr1g075200' => 'mtr', 'Medtr1g075250' => 'mtr', 'Medtr1g075260' => 'mtr', 'Medtr1g475250' => 'mtr', 'Medtr4g075450' => 'mtr', 'Medtr7g096300' => 'mtr', 'Medtr8g105110' => 'mtr', 'MELO3C006470.2' => 'cme', 'MELO3C006471.2' => 'cme', 'MELO3C020772.2' => 'cme', 'MELO3C026780.2' => 'cme', 'MELO3C026781.2' => 'cme', 'Migut.D00390' => 'egut', 'Migut.G00435' => 'egut', 'Migut.G00436' => 'egut', 'Migut.G00718' => 'egut', 'MSTRG.21891' => 'ama', 'MSTRG.26910' => 'ama', 'MSTRG.4099' => 'ama', 'MSTRG.9925' => 'ama', 'Nitab4.5_0000165g0010' => 'nta', 'Nitab4.5_0000209g0180' => 'nta', 'Nitab4.5_0000244g0440' => 'nta', 'Nitab4.5_0000525g0220' => 'nta', 'Nitab4.5_0001597g0020' => 'nta', 'Nitab4.5_0001878g0040' => 'nta', 'Nitab4.5_0001878g0060' => 'nta', 'Nitab4.5_0002838g0100' => 'nta', 'Nitab4.5_0002838g0120' => 'nta', 'Nitab4.5_0004798g0030' => 'nta', 'Nitab4.5_0005420g0010' => 'nta', 'Nitab4.5_0005507g0010' => 'nta', 'Nitab4.5_0005574g0020' => 'nta', 'Nitab4.5_0005838g0010' => 'nta', 'Nitab4.5_0010580g0020' => 'nta', 'Nn1g02599' => 'nnu', 'Nn1g02608' => 'nnu', 'Nn3g17742' => 'nnu', 'Nn3g19534' => 'nnu', 'Nn3g19535' => 'nnu', 'Oeu008790.1' => 'oeu', 'Oeu008792.1' => 'oeu', 'Oeu032590.1' => 'oeu', 'Oeu035349.1' => 'oeu', 'Oeu049791.1' => 'oeu', 'Os01g0774500' => 'osa', 'Os03g0628800' => 'osa', 'Os03g0798600' => 'osa', 'Os05g0508800' => 'osa', 'Peaxi162Scf00036g02018' => 'pax', 'Peaxi162Scf00578g00032' => 'pax', 'Peaxi162Scf00578g00317' => 'pax', 'Peaxi162Scf00785g00114' => 'pax', 'Peaxi162Scf00813g00119' => 'pax', 'Peaxi162Scf00906g00227' => 'pax', 'PGR004G0875' => 'pgr', 'PGR004G2424' => 'pgr', 'PGR031G1239' => 'pgr', 'PGR031G2474' => 'pgr', 'PGR044G0423' => 'pgr', 'PGSC0003DMG400001128' => 'stu', 'PGSC0003DMG400007336' => 'stu', 'PGSC0003DMG400016318' => 'stu', 'PGSC0003DMG400016319' => 'stu', 'PGSC0003DMG400018074' => 'stu', 'Phvul.001G157700' => 'pvu', 'Phvul.002G148550' => 'pvu', 'Phvul.002G320200' => 'pvu', 'Phvul.003G089200' => 'pvu', 'Phvul.007G126000' => 'pvu', 'Phvul.007G126100' => 'pvu', 'Phvul.007G178000' => 'pvu', 'Phvul.007G178200' => 'pvu', 'Potri.002G043000' => 'ptr', 'Potri.002G043200' => 'ptr', 'Potri.003G123750' => 'ptr', 'Potri.005G055401' => 'ptr', 'Potri.005G219700' => 'ptr', 'Potri.005G220000' => 'ptr', 'Potri.008G161901' => 'ptr', 'Potri.008G162000' => 'ptr', 'Potri.008G162400' => 'ptr', 'Potri.010G076900' => 'ptr', 'Pp3c12_9180' => 'ppa', 'Pp3c13_19770' => 'ppa', 'Pp3c14_22950' => 'ppa', 'Pp3c16_12160' => 'ppa', 'Pp3c27_7820' => 'ppa', 'Pp3c2_3490' => 'ppa', 'Pp3c3_23700' => 'ppa', 'Pp3c3_36520' => 'ppa', 'Pp3c4_15250' => 'ppa', 'PRCOL_00007002' => 'pco', 'Prupe.1G030600' => 'ppe', 'Prupe.1G030700' => 'ppe', 'Prupe.6G345200' => 'ppe', 'Prupe.8G230300' => 'ppe', 'Prupe.8G230500' => 'ppe', 'Psat3g059600' => 'psa', 'Psat5g200920' => 'psa', 'Psat6g056440' => 'psa', 'Psat6g057360' => 'psa', 'Psat6g134120' => 'psa', 'Psat6g134160' => 'psa', 'Psat7g008640' => 'psa', 'Psat7g185240' => 'psa', 'PSO017G1330' => 'pso', 'PSO063G6097' => 'pso', 'PSO170G0835' => 'pso', 'PSO170G2499' => 'pso', 'PSO210G5058' => 'pso', 'PSO210G6154' => 'pso', 'PSO585G0031' => 'pso', 'PSO832G0264' => 'pso', 'PSO832G4288' => 'pso', 'QL03p027355' => 'qlo', 'QL03p027430' => 'qlo', 'QL04p081380' => 'qlo', 'QL06p015642' => 'qlo', 'QL06p015650' => 'qlo', 'QL06p015686' => 'qlo', 'QL12p042927' => 'qlo', 'QL93p1863_0035' => 'qlo', 'RcHm_v2.0_Chr3g0450581' => 'rch', 'RcHm_v2.0_Chr4g0390371' => 'rch', 'RcHm_v2.0_Chr4g0390381' => 'rch', 'RcHm_v2.0_Chr4g0390491' => 'rch', 'RcHm_v2.0_Chr4g0390501' => 'rch', 'RcHm_v2.0_Chr6g0289231' => 'rch', 'Rhsim04G0190400' => 'rsi', 'Rhsim04G0190500' => 'rsi', 'Rhsim04G0190600' => 'rsi', 'Rhsim13G0031400' => 'rsi', 'Rhsim13G0165600' => 'rsi', 'RhsimUnG0114600' => 'rsi', 'RhsimUnG0114700' => 'rsi', 'Sabra02G0034800' => 'sbr', 'Sabra02G0035100' => 'sbr', 'Sabra05G0168600' => 'sbr', 'Sabra05G0168800' => 'sbr', 'Sabra08G0123700' => 'sbr', 'Sabra10G0031900' => 'sbr', 'Sabra13G0039000' => 'sbr', 'SalBow2G0782' => 'sbo', 'SalBow2G1403' => 'sbo', 'SalBow4G0074' => 'sbo', 'SalBow4G2635' => 'sbo', 'SalBow5G3010' => 'sbo', 'Sc05g0000870' => 'sci', 'Sc05g0000890' => 'sci', 'Sc13g0005000' => 'sci', 'Sc13g0005030' => 'sci', 'Sc19g0003790' => 'sci', 'Sc19g0003800' => 'sci', 'Sed0003467' => 'sed', 'Sed0009355' => 'sed', 'Sed0009894' => 'sed', 'Sed0011972' => 'sed', 'Sed0021483' => 'sed', 'Sed0021750' => 'sed', 'Sed0026279' => 'sed', 'SEGI_05312' => 'sgi', 'SEGI_10112' => 'sgi', 'SEGI_15835' => 'sgi', 'SEGI_30386' => 'sgi', 'SEGI_34122' => 'sgi', 'SEGI_35063' => 'sgi', 'SGA_v2.0_scaffold101G29794' => 'sas', 'SGA_v2.0_scaffold1G00573' => 'sas', 'SGA_v2.0_scaffold79G25637' => 'sas', 'SGA_v2.0_scaffold88G27283' => 'sas', 'SGA_v2.0_scaffold88G27285' => 'sas', 'SGA_v2.0_scaffold88G27331' => 'sas', 'SHI09937' => 'shi', 'SMO119G0302' => 'smo', 'SMO137G0231' => 'smo', 'SMO367G1151' => 'smo', 'Solyc02g082000.3' => 'sly', 'Solyc06g031670.3' => 'sly', 'Solyc06g053810.3' => 'sly', 'Solyc07g025457.1' => 'sly', 'Solyc08g059740.1' => 'sly', 'Solyc08g059750.3' => 'sly', 'Solyc09g083370.3' => 'sly', 'Solyc12g038950.3' => 'sly', 'Sopen02g026630' => 'spe', 'Sopen06g018930' => 'spe', 'Sopen06g018940' => 'spe', 'Sopen08g009460' => 'spe', 'Sopen09g032290' => 'spe', 'Sp1g03080' => 'spa', 'Sp1g03090' => 'spa', 'Sp1g05480' => 'spa', 'Sp2g07860' => 'spa', 'Sp2g08430' => 'spa', 'Sp2g08440' => 'spa', 'Sp2g26200' => 'spa', 'Sp4g13170' => 'spa', 'Sp6g33840' => 'spa', 'SpUn1204_0010' => 'spa', 'TAR365G0908' => 'tar', 'TAR381G1270' => 'tar', 'TAR381G1651' => 'tar', 'TAR625G1131' => 'tar', 'TAR633G0962' => 'tar', 'TAR633G1729' => 'tar', 'TAR633G1864' => 'tar', 'TAR636G0221' => 'tar', 'TAR636G0314' => 'tar', 'TAR636G3202' => 'tar', 'THA.LOC104800805' => 'tha', 'THA.LOC104801096' => 'tha', 'THA.LOC104801555' => 'tha', 'THA.LOC104808491' => 'tha', 'THA.LOC104808595' => 'tha', 'THA.LOC104815985' => 'tha', 'THA.LOC104822250' => 'tha', 'THA.LOC104826071' => 'tha', 'Thecc.01G265200' => 'tca', 'Thecc.01G265300' => 'tca', 'Thecc.01G265700' => 'tca', 'Thecc.03G109100' => 'tca', 'Thecc.04G245900' => 'tca', 'Thecc.04G246000' => 'tca', 'Thhalv10003334m.g' => 'esa', 'Thhalv10005508m.g' => 'esa', 'Thhalv10005643m.g' => 'esa', 'Thhalv10007316m.g' => 'esa', 'Thhalv10009006m.g' => 'esa', 'Thhalv10009309m.g' => 'esa', 'Thhalv10014917m.g' => 'esa', 'Thhalv10014919m.g' => 'esa', 'Thhalv10015393m.g' => 'esa', 'Thhalv10016515m.g' => 'esa', 'Thhalv10029242m.g' => 'esa', 'TPR.G16654' => 'tpr', 'TPR.G20589' => 'tpr', 'TPR.G23029' => 'tpr', 'TPR.G27731' => 'tpr', 'TPR.G28889' => 'tpr', 'TPR.G28899' => 'tpr', 'TPR.G30846' => 'tpr', 'TPR.G5452' => 'tpr', 'TPR.G5713' => 'tpr', 'TPR.G9046' => 'tpr', 'TPR.G9061' => 'tpr', 'TWI09G1075' => 'twi', 'TWI12G0806' => 'twi', 'TWI18G0108' => 'twi', 'TWI53G1361' => 'twi', 'TWI73G0185' => 'twi', 'TWI73G0427' => 'twi', 'unitig_37.g12001' => 'ugi', 'unitig_747.g21660' => 'ugi', 'unitig_748.g7232' => 'ugi', 'unitig_748.g7315' => 'ugi', 'unitig_85.g27262' => 'ugi', 'unitig_92.g28220' => 'ugi', 'vmacro02632' => 'vma', 'vmacro08410' => 'vma', 'vmacro08411' => 'vma', 'vmacro15407' => 'vma', 'VMungo0251G3619' => 'vmu', 'VMungo0720G1204' => 'vmu', 'VMungo0720G1918' => 'vmu', 'VMungo0720G2387' => 'vmu', 'VMungo0720G2961' => 'vmu', 'VMungo1215G2154' => 'vmu', 'VMungo1383G2411' => 'vmu', 'Zm00001eb051130' => 'zma', 'Zm00001eb116830' => 'zma', 'Zm00001eb116850' => 'zma', 'Zm00001eb151740' => 'zma', 'Zm00001eb292360' => 'zma', 'Zm00001eb301640' => 'zma' ), 'gf_id' => 'HOM05D000856', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000856' ), 'data_identifier' => 'HOM05D000856', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000856', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p00010' => 'bna', 'A03p04160' => 'bna', 'A03p17160' => 'bna', 'A04p23370' => 'bna', 'A05p14860' => 'bna', 'A08p37020' => 'bna', 'A09p08050' => 'bna', 'A09p66800' => 'bna', 'A09p67940' => 'bna', 'A10p02680' => 'bna', 'A10p05320' => 'bna', 'Aa31LG1G20560' => 'aar', 'Aa31LG1G20610' => 'aar', 'Aa31LG1G7810' => 'aar', 'Aa31LG5G3590' => 'aar', 'Aa31LG5G6140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3819' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4683' => 'aag', 'Actinidia04480' => 'ach', 'Actinidia05466' => 'ach', 'Actinidia08445' => 'ach', 'Actinidia21170' => 'ach', 'Actinidia24812' => 'ach', 'Actinidia24951' => 'ach', 'Actinidia40088' => 'ach', 'Ah.02g111660' => 'amhyb', 'Ah.11g048900' => 'amhyb', 'Ah.11g049910' => 'amhyb', 'AL1G13870' => 'aly', 'AL1G13880' => 'aly', 'AL1G16760' => 'aly', 'AL390U10020' => 'aly', 'AL4G25520' => 'aly', 'AL6G19890' => 'aly', 'AL6G19900' => 'aly', 'AL6G19910' => 'aly', 'AL8G40100' => 'aly', 'Aqoxy2G03562' => 'aox', 'Aqoxy5G00316' => 'aox', 'Aqoxy5G00926' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1628KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1H403S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2FU6SJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.882I6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8YRY2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YN1SN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AF70II' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZA8L1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F916KL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHRD8H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KTZ8QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S22EMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8M29T' => 'arhy', 'AT1G04270' => 'ath', 'AT1G04280' => 'ath', 'AT1G06750' => 'ath', 'AT1G33850' => 'ath', 'AT2G30630' => 'ath', 'AT5G09490' => 'ath', 'AT5G09500' => 'ath', 'AT5G09510' => 'ath', 'AT5G43640' => 'ath', 'AT5G63070' => 'ath', 'ATR0605G315' => 'atr', 'Atru.chr11.175' => 'acertr', 'Atru.chr11.653' => 'acertr', 'Atru.chr3.1616' => 'acertr', 'Atru.chr4.2230' => 'acertr', 'Atru.chr4.2232' => 'acertr', 'Atru.chr5.1598' => 'acertr', 'Atru.chr5.1600' => 'acertr', 'Atru.chr5.2188' => 'acertr', 'AUR62008326' => 'cqu', 'AUR62011922' => 'cqu', 'AUR62011924' => 'cqu', 'AUR62021771' => 'cqu', 'AUR62032237' => 'cqu', 'AUR62032240' => 'cqu', 'BcaB01g05572' => 'bca', 'BcaB02g10337' => 'bca', 'BcaB04g19944' => 'bca', 'BcaB05g21548' => 'bca', 'BcaB05g21549' => 'bca', 'BcaB05g23227' => 'bca', 'BcaB06g26256' => 'bca', 'BcaB06g26257' => 'bca', 'BcaB06g28379' => 'bca', 'BcaC02g11159' => 'bca', 'BcaC03g13258' => 'bca', 'BcaC03g13259' => 'bca', 'BcaC05g24456' => 'bca', 'BcaC05g24457' => 'bca', 'BcaC07g36922' => 'bca', 'BcaC07g36923' => 'bca', 'BcaC07g42050' => 'bca', 'BcaC07g42176' => 'bca', 'BcaC07g42195' => 'bca', 'BcaC07g42196' => 'bca', 'BcaNung06674' => 'bca', 'BolC2t06351H' => 'bol', 'BolC2t06352H' => 'bol', 'BolC3t12993H' => 'bol', 'BolC4t23525H' => 'bol', 'BolC4t27475H' => 'bol', 'BolC5t29025H' => 'bol', 'BolC5t29026H' => 'bol', 'BolC8t46898H' => 'bol', 'BolC8t46899H' => 'bol', 'BolC8t52630H' => 'bol', 'BolC8t52765H' => 'bol', 'BolC9t53824H' => 'bol', 'BraA03t09760Z' => 'bra', 'BraA03t10990Z' => 'bra', 'BraA05t20413Z' => 'bra', 'BraA08t35602Z' => 'bra', 'BraA09t36458Z' => 'bra', 'BraA09t42018Z' => 'bra', 'BraA09t42129Z' => 'bra', 'BraA10t42536Z' => 'bra', 'BraA10t42537Z' => 'bra', 'C01p10690' => 'bna', 'C02p03890' => 'bna', 'C02p03900' => 'bna', 'C03p04620' => 'bna', 'C04p19870' => 'bna', 'C04p59670' => 'bna', 'C05p02460' => 'bna', 'C05p02470' => 'bna', 'C08p00980' => 'bna', 'C08p00990' => 'bna', 'C08p51030' => 'bna', 'C08p52360' => 'bna', 'C09p09120' => 'bna', 'CAN.G19.15' => 'can', 'CAN.G251.10' => 'can', 'CAN.G251.9' => 'can', 'CAN.G398.24' => 'can', 'CAN.G410.32' => 'can', 'CAN.G881.2' => 'can', 'CANSAT01G3025' => 'cansat', 'CANSAT78G1211' => 'cansat', 'CANSAT78G1218' => 'cansat', 'CANSAT78G1521' => 'cansat', 'CANSAT78G1670' => 'cansat', 'CARHR003600' => 'chi', 'CARHR003610' => 'chi', 'CARHR006290' => 'chi', 'CARHR006430' => 'chi', 'CARHR124110' => 'chi', 'CARHR203870' => 'chi', 'CARHR203880' => 'chi', 'CARHR203890' => 'chi', 'CARHR276880' => 'chi', 'Carub.0001s0346' => 'cru', 'Carub.0001s0347' => 'cru', 'Carub.0001s0607' => 'cru', 'Carub.0003s2768' => 'cru', 'Carub.0003s2769' => 'cru', 'Carub.0004s1178' => 'cru', 'Carub.0006s0806' => 'cru', 'Carub.0006s0807' => 'cru', 'Carub.0006s0808' => 'cru', 'Carub.0008s0501' => 'cru', 'Carub.0008s2379' => 'cru', 'Ca_08655_v3' => 'car', 'Ca_08922_v3' => 'car', 'Ca_08923_v3' => 'car', 'Ca_09119_v3' => 'car', 'Ca_09703_v3' => 'car', 'Ca_09705_v3' => 'car', 'Ca_09835_v3' => 'car', 'Ca_26403_v3' => 'car', 'Ca_30719_v3' => 'car', 'CBR_g17958' => 'cbr', 'CBR_g40516' => 'cbr', 'Cc00_g05350' => 'ccan', 'Cc01_g18690' => 'ccan', 'Cc03_g04830' => 'ccan', 'Cc03_g04850' => 'ccan', 'CDE02G4469' => 'cde', 'CDE06G0883' => 'cde', 'CDE06G1295' => 'cde', 'CDE06G1390' => 'cde', 'CDE07G0584' => 'cde', 'CDE07G1084' => 'cde', 'CDE08G1259' => 'cde', 'Cfa002341' => 'cfa', 'Cfa024337' => 'cfa', 'Ciclev10004749m.g' => 'ccl', 'Ciclev10006127m.g' => 'ccl', 'Ciclev10019720m.g' => 'ccl', 'Ciclev10022652m.g' => 'ccl', 'CiPaw.01G190400' => 'cil', 'CiPaw.01G190500' => 'cil', 'CiPaw.02G116400' => 'cil', 'CiPaw.02G116500' => 'cil', 'CiPaw.04G183000' => 'cil', 'CiPaw.04G183300' => 'cil', 'ClCG05G004610' => 'cla', 'ClCG05G004620' => 'cla', 'ClCG06G006730' => 'cla', 'ClCG06G006740' => 'cla', 'ClCG11G003690' => 'cla', 'COL.COLO4_08276' => 'col', 'COL.COLO4_08277' => 'col', 'COL.COLO4_15787' => 'col', 'COL.COLO4_15789' => 'col', 'Cpa.g.c44815' => 'cpa', 'Cpa.g.sc52.144' => 'cpa', 'Cpa.g.sc58.46' => 'cpa', 'Cpa.g.sc58.47' => 'cpa', 'Cre08.g360900' => 'cre', 'CsaV3_2G013030' => 'csa', 'CsaV3_2G013050' => 'csa', 'CsaV3_2G015620' => 'csa', 'CsaV3_3G012590' => 'csa', 'CsaV3_3G012600' => 'csa', 'CSS0001641' => 'camsi', 'CSS0008310' => 'camsi', 'CSS0013011' => 'camsi', 'CSS0017147' => 'camsi', 'CSS0022970' => 'camsi', 'CSS0025655' => 'camsi', 'CSS0028665' => 'camsi', 'CSS0029117' => 'camsi', 'CSS0032024' => 'camsi', 'CSS0039681' => 'camsi', 'CSS0046516' => 'camsi', 'CSS0050307' => 'camsi', 'DCAR_005871' => 'dca', 'DCAR_007342' => 'dca', 'DCAR_024228' => 'dca', 'DCAR_027277' => 'dca', 'DCAR_030718' => 'dca', 'Dinv20287' => 'din', 'Dinv22461' => 'din', 'Dinv22464' => 'din', 'Dinv29912' => 'din', 'Dinv29913' => 'din', 'Dinv34580' => 'din', 'Dinv34582' => 'din', 'Dinv44632' => 'din', 'Duzib052G0266' => 'dzi', 'Duzib133G0907' => 'dzi', 'Duzib133G1034' => 'dzi', 'Duzib138G0207' => 'dzi', 'Duzib138G0491' => 'dzi', 'Duzib151G0812' => 'dzi', 'Duzib151G1166' => 'dzi', 'Duzib168G0192' => 'dzi', 'Duzib211G0077' => 'dzi', 'Duzib212G0429' => 'dzi', 'Duzib212G0472' => 'dzi', 'ECA233G2617' => 'eca', 'ECA236G4188' => 'eca', 'ECA240G0936' => 'eca', 'ECA240G1129' => 'eca', 'ECA247G0623' => 'eca', 'EL10Ac5g10451' => 'bvu', 'EL10Ac5g10453' => 'bvu', 'EL10Ac5g10894' => 'bvu', 'Eucgr.H00192' => 'egr', 'Eucgr.H00193' => 'egr', 'Eucgr.H00194' => 'egr', 'Eucgr.J01562' => 'egr', 'Eucgr.K03301' => 'egr', 'FAN02G0632' => 'fan', 'FAN05G5378' => 'fan', 'FAN09G3247' => 'fan', 'FAN12G0435' => 'fan', 'FAN12G2426' => 'fan', 'FAN14G1707' => 'fan', 'FAN14G4725' => 'fan', 'FAN15G2071' => 'fan', 'FAN17G3065' => 'fan', 'FAN19G1376' => 'fan', 'FAN20G0354' => 'fan', 'FAN20G2429' => 'fan', 'FAN20G2658' => 'fan', 'FAN24G2343' => 'fan', 'FAN27G2362' => 'fan', 'FAN28G1765' => 'fan', 'FvH4_1g16020' => 'fve', 'FvH4_2g04890' => 'fve', 'FvH4_2g22270' => 'fve', 'FvH4_4g02630' => 'fve', 'FvH4_4g02640' => 'fve', 'FvH4_6g02650' => 'fve', 'Glyma.02G140600' => 'gma', 'Glyma.03G159900' => 'gma', 'Glyma.05G234800' => 'gma', 'Glyma.07G269600' => 'gma', 'Glyma.08G042300' => 'gma', 'Glyma.10G033500' => 'gma', 'Glyma.10G185200' => 'gma', 'Glyma.17G004300' => 'gma', 'Glyma.19G161900' => 'gma', 'Glyma.20G205100' => 'gma', 'Glyma.20G205200' => 'gma', 'Gohir.A01G139101' => 'ghi', 'Gohir.A02G035600' => 'ghi', 'Gohir.A02G117901' => 'ghi', 'Gohir.A07G210100' => 'ghi', 'Gohir.A07G210200' => 'ghi', 'Gohir.A08G061100' => 'ghi', 'Gohir.A09G223000' => 'ghi', 'Gohir.A09G223100' => 'ghi', 'Gohir.A10G113900' => 'ghi', 'Gohir.A10G114000' => 'ghi', 'Gohir.D02G042300' => 'ghi', 'Gohir.D07G216100' => 'ghi', 'Gohir.D07G216200' => 'ghi', 'Gohir.D08G070400' => 'ghi', 'Gohir.D09G225000' => 'ghi', 'Gohir.D09G225100' => 'ghi', 'Gohir.D10G152300' => 'ghi', 'Gohir.D10G153200' => 'ghi', 'Gohir.D11G133701' => 'ghi', 'Gorai.004G074100' => 'gra', 'Gorai.005G046800' => 'gra', 'Gorai.006G246500' => 'gra', 'Gorai.006G246600' => 'gra', 'Gorai.007G142900' => 'gra', 'Gorai.011G171000' => 'gra', 'Gorai.011G171100' => 'gra', 'Gorai.013G104300' => 'gra', 'Gorai.013G104400' => 'gra', 'GSVIVG01000754001' => 'vvi', 'GSVIVG01000756001' => 'vvi', 'GSVIVG01010903001' => 'vvi', 'GSVIVG01017623001' => 'vvi', 'GSVIVG01018113001' => 'vvi', 'GSVIVG01018116001' => 'vvi', 'GSVIVG01018118001' => 'vvi', 'HanXRQChr03g0076211' => 'han', 'HanXRQChr03g0092431' => 'han', 'HanXRQChr03g0092441' => 'han', 'HanXRQChr03g0092591' => 'han', 'HanXRQChr03g0092671' => 'han', 'HanXRQChr03g0092681' => 'han', 'HanXRQChr03g0092691' => 'han', 'HanXRQChr03g0092701' => 'han', 'HanXRQChr03g0092721' => 'han', 'HanXRQChr03g0092731' => 'han', 'HanXRQChr04g0113681' => 'han', 'HanXRQChr10g0281371' => 'han', 'HanXRQChr11g0337141' => 'han', 'HanXRQChr13g0424521' => 'han', 'HanXRQChr13g0424531' => 'han', 'HanXRQChr13g0424541' => 'han', 'HanXRQChr16g0498221' => 'han', 'Haze_04377' => 'cav', 'Haze_11298' => 'cav', 'Haze_24547' => 'cav', 'Haze_24550' => 'cav', 'Haze_26587' => 'cav', 'Hma1.2p1_0650F.1_g195410' => 'hma', 'Hma1.2p1_0893F.1_g233470' => 'hma', 'HPP92_006508' => 'vpl', 'HPP92_024780' => 'vpl', 'Hund02688' => 'sun', 'Hund09380' => 'sun', 'Hund09381' => 'sun', 'Hund09832' => 'sun', 'Hund09833' => 'sun', 'Hund11351' => 'sun', 'Hund11513' => 'sun', 'Lalb_Chr06g0162591' => 'lal', 'Lalb_Chr06g0162601' => 'lal', 'Lalb_Chr06g0169321' => 'lal', 'Lalb_Chr09g0330951' => 'lal', 'Lalb_Chr16g0387631' => 'lal', 'Lalb_Chr21g0306241' => 'lal', 'Lalb_Chr25g0290051' => 'lal', 'Lalb_Chr25g0290061' => 'lal', 'Lalb_Chr25g0290071' => 'lal', 'Lj1g0003876' => 'lja', 'Lj1P1207T36' => 'lonja', 'Lj2C1156G12' => 'lonja', 'Lj3A793G39' => 'lonja', 'Lj3C580G2' => 'lonja', 'Lj3C780G2' => 'lonja', 'Lj3C780T4' => 'lonja', 'Lj3C793G9' => 'lonja', 'Lj4g0012960' => 'lja', 'Lj5g0021252' => 'lja', 'Lj5g0021484' => 'lja', 'Lj5g0024528' => 'lja', 'Lj6A399T12' => 'lonja', 'Lj6A656G65' => 'lonja', 'Lsat_1_v5_gn_3_125500' => 'lsa', 'Lsat_1_v5_gn_3_125540' => 'lsa', 'Lsat_1_v5_gn_5_72701' => 'lsa', 'Lsat_1_v5_gn_8_91560' => 'lsa', 'Lsat_1_v5_gn_9_9640' => 'lsa', 'Manes.01G200600' => 'mes', 'Manes.01G200700' => 'mes', 'Manes.03G168900' => 'mes', 'Manes.03G169000' => 'mes', 'Manes.05G085801' => 'mes', 'Manes.05G086200' => 'mes', 'Manes.15G036700' => 'mes', 'Manes.15G036900' => 'mes', 'Mapoly0004s0172' => 'mpo', 'Mapoly0023s0001' => 'mpo', 'Mapoly0142s0012' => 'mpo', 'MBI01_g32854_MAGBIO' => 'mbi', 'MBI11_g24427_MAGBIO' => 'mbi', 'MBI11_g47319_MAGBIO' => 'mbi', 'MCO01G433' => 'mco', 'MD00G1187800' => 'mdo', 'MD04G1226500' => 'mdo', 'MD05G1203900' => 'mdo', 'MD10G1191100' => 'mdo', 'MD12G1243500' => 'mdo', 'MD13G1207000' => 'mdo', 'MD13G1207100' => 'mdo', 'MD16G1208600' => 'mdo', 'Medtr1g050352' => 'mtr', 'Medtr1g070385' => 'mtr', 'Medtr1g070450' => 'mtr', 'Medtr1g075200' => 'mtr', 'Medtr1g075250' => 'mtr', 'Medtr1g075260' => 'mtr', 'Medtr1g475250' => 'mtr', 'Medtr4g075450' => 'mtr', 'Medtr7g096300' => 'mtr', 'Medtr8g105110' => 'mtr', 'MELO3C006470.2' => 'cme', 'MELO3C006471.2' => 'cme', 'MELO3C020772.2' => 'cme', 'MELO3C026780.2' => 'cme', 'MELO3C026781.2' => 'cme', 'Migut.D00390' => 'egut', 'Migut.G00435' => 'egut', 'Migut.G00436' => 'egut', 'Migut.G00718' => 'egut', 'MSTRG.21891' => 'ama', 'MSTRG.26910' => 'ama', 'MSTRG.4099' => 'ama', 'MSTRG.9925' => 'ama', 'Nitab4.5_0000165g0010' => 'nta', 'Nitab4.5_0000209g0180' => 'nta', 'Nitab4.5_0000244g0440' => 'nta', 'Nitab4.5_0000525g0220' => 'nta', 'Nitab4.5_0001597g0020' => 'nta', 'Nitab4.5_0001878g0040' => 'nta', 'Nitab4.5_0001878g0060' => 'nta', 'Nitab4.5_0002838g0100' => 'nta', 'Nitab4.5_0002838g0120' => 'nta', 'Nitab4.5_0004798g0030' => 'nta', 'Nitab4.5_0005420g0010' => 'nta', 'Nitab4.5_0005507g0010' => 'nta', 'Nitab4.5_0005574g0020' => 'nta', 'Nitab4.5_0005838g0010' => 'nta', 'Nitab4.5_0010580g0020' => 'nta', 'Nn1g02599' => 'nnu', 'Nn1g02608' => 'nnu', 'Nn3g17742' => 'nnu', 'Nn3g19534' => 'nnu', 'Nn3g19535' => 'nnu', 'Oeu008790.1' => 'oeu', 'Oeu008792.1' => 'oeu', 'Oeu032590.1' => 'oeu', 'Oeu035349.1' => 'oeu', 'Oeu049791.1' => 'oeu', 'Os01g0774500' => 'osa', 'Os03g0628800' => 'osa', 'Os03g0798600' => 'osa', 'Os05g0508800' => 'osa', 'Peaxi162Scf00036g02018' => 'pax', 'Peaxi162Scf00578g00032' => 'pax', 'Peaxi162Scf00578g00317' => 'pax', 'Peaxi162Scf00785g00114' => 'pax', 'Peaxi162Scf00813g00119' => 'pax', 'Peaxi162Scf00906g00227' => 'pax', 'PGR004G0875' => 'pgr', 'PGR004G2424' => 'pgr', 'PGR031G1239' => 'pgr', 'PGR031G2474' => 'pgr', 'PGR044G0423' => 'pgr', 'PGSC0003DMG400001128' => 'stu', 'PGSC0003DMG400007336' => 'stu', 'PGSC0003DMG400016318' => 'stu', 'PGSC0003DMG400016319' => 'stu', 'PGSC0003DMG400018074' => 'stu', 'Phvul.001G157700' => 'pvu', 'Phvul.002G148550' => 'pvu', 'Phvul.002G320200' => 'pvu', 'Phvul.003G089200' => 'pvu', 'Phvul.007G126000' => 'pvu', 'Phvul.007G126100' => 'pvu', 'Phvul.007G178000' => 'pvu', 'Phvul.007G178200' => 'pvu', 'Potri.002G043000' => 'ptr', 'Potri.002G043200' => 'ptr', 'Potri.003G123750' => 'ptr', 'Potri.005G055401' => 'ptr', 'Potri.005G219700' => 'ptr', 'Potri.005G220000' => 'ptr', 'Potri.008G161901' => 'ptr', 'Potri.008G162000' => 'ptr', 'Potri.008G162400' => 'ptr', 'Potri.010G076900' => 'ptr', 'Pp3c12_9180' => 'ppa', 'Pp3c13_19770' => 'ppa', 'Pp3c14_22950' => 'ppa', 'Pp3c16_12160' => 'ppa', 'Pp3c27_7820' => 'ppa', 'Pp3c2_3490' => 'ppa', 'Pp3c3_23700' => 'ppa', 'Pp3c3_36520' => 'ppa', 'Pp3c4_15250' => 'ppa', 'PRCOL_00007002' => 'pco', 'Prupe.1G030600' => 'ppe', 'Prupe.1G030700' => 'ppe', 'Prupe.6G345200' => 'ppe', 'Prupe.8G230300' => 'ppe', 'Prupe.8G230500' => 'ppe', 'Psat3g059600' => 'psa', 'Psat5g200920' => 'psa', 'Psat6g056440' => 'psa', 'Psat6g057360' => 'psa', 'Psat6g134120' => 'psa', 'Psat6g134160' => 'psa', 'Psat7g008640' => 'psa', 'Psat7g185240' => 'psa', 'PSO017G1330' => 'pso', 'PSO063G6097' => 'pso', 'PSO170G0835' => 'pso', 'PSO170G2499' => 'pso', 'PSO210G5058' => 'pso', 'PSO210G6154' => 'pso', 'PSO585G0031' => 'pso', 'PSO832G0264' => 'pso', 'PSO832G4288' => 'pso', 'QL03p027355' => 'qlo', 'QL03p027430' => 'qlo', 'QL04p081380' => 'qlo', 'QL06p015642' => 'qlo', 'QL06p015650' => 'qlo', 'QL06p015686' => 'qlo', 'QL12p042927' => 'qlo', 'QL93p1863_0035' => 'qlo', 'RcHm_v2.0_Chr3g0450581' => 'rch', 'RcHm_v2.0_Chr4g0390371' => 'rch', 'RcHm_v2.0_Chr4g0390381' => 'rch', 'RcHm_v2.0_Chr4g0390491' => 'rch', 'RcHm_v2.0_Chr4g0390501' => 'rch', 'RcHm_v2.0_Chr6g0289231' => 'rch', 'Rhsim04G0190400' => 'rsi', 'Rhsim04G0190500' => 'rsi', 'Rhsim04G0190600' => 'rsi', 'Rhsim13G0031400' => 'rsi', 'Rhsim13G0165600' => 'rsi', 'RhsimUnG0114600' => 'rsi', 'RhsimUnG0114700' => 'rsi', 'Sabra02G0034800' => 'sbr', 'Sabra02G0035100' => 'sbr', 'Sabra05G0168600' => 'sbr', 'Sabra05G0168800' => 'sbr', 'Sabra08G0123700' => 'sbr', 'Sabra10G0031900' => 'sbr', 'Sabra13G0039000' => 'sbr', 'SalBow2G0782' => 'sbo', 'SalBow2G1403' => 'sbo', 'SalBow4G0074' => 'sbo', 'SalBow4G2635' => 'sbo', 'SalBow5G3010' => 'sbo', 'Sc05g0000870' => 'sci', 'Sc05g0000890' => 'sci', 'Sc13g0005000' => 'sci', 'Sc13g0005030' => 'sci', 'Sc19g0003790' => 'sci', 'Sc19g0003800' => 'sci', 'Sed0003467' => 'sed', 'Sed0009355' => 'sed', 'Sed0009894' => 'sed', 'Sed0011972' => 'sed', 'Sed0021483' => 'sed', 'Sed0021750' => 'sed', 'Sed0026279' => 'sed', 'SEGI_05312' => 'sgi', 'SEGI_10112' => 'sgi', 'SEGI_15835' => 'sgi', 'SEGI_30386' => 'sgi', 'SEGI_34122' => 'sgi', 'SEGI_35063' => 'sgi', 'SGA_v2.0_scaffold101G29794' => 'sas', 'SGA_v2.0_scaffold1G00573' => 'sas', 'SGA_v2.0_scaffold79G25637' => 'sas', 'SGA_v2.0_scaffold88G27283' => 'sas', 'SGA_v2.0_scaffold88G27285' => 'sas', 'SGA_v2.0_scaffold88G27331' => 'sas', 'SHI09937' => 'shi', 'SMO119G0302' => 'smo', 'SMO137G0231' => 'smo', 'SMO367G1151' => 'smo', 'Solyc02g082000.3' => 'sly', 'Solyc06g031670.3' => 'sly', 'Solyc06g053810.3' => 'sly', 'Solyc07g025457.1' => 'sly', 'Solyc08g059740.1' => 'sly', 'Solyc08g059750.3' => 'sly', 'Solyc09g083370.3' => 'sly', 'Solyc12g038950.3' => 'sly', 'Sopen02g026630' => 'spe', 'Sopen06g018930' => 'spe', 'Sopen06g018940' => 'spe', 'Sopen08g009460' => 'spe', 'Sopen09g032290' => 'spe', 'Sp1g03080' => 'spa', 'Sp1g03090' => 'spa', 'Sp1g05480' => 'spa', 'Sp2g07860' => 'spa', 'Sp2g08430' => 'spa', 'Sp2g08440' => 'spa', 'Sp2g26200' => 'spa', 'Sp4g13170' => 'spa', 'Sp6g33840' => 'spa', 'SpUn1204_0010' => 'spa', 'TAR365G0908' => 'tar', 'TAR381G1270' => 'tar', 'TAR381G1651' => 'tar', 'TAR625G1131' => 'tar', 'TAR633G0962' => 'tar', 'TAR633G1729' => 'tar', 'TAR633G1864' => 'tar', 'TAR636G0221' => 'tar', 'TAR636G0314' => 'tar', 'TAR636G3202' => 'tar', 'THA.LOC104800805' => 'tha', 'THA.LOC104801096' => 'tha', 'THA.LOC104801555' => 'tha', 'THA.LOC104808491' => 'tha', 'THA.LOC104808595' => 'tha', 'THA.LOC104815985' => 'tha', 'THA.LOC104822250' => 'tha', 'THA.LOC104826071' => 'tha', 'Thecc.01G265200' => 'tca', 'Thecc.01G265300' => 'tca', 'Thecc.01G265700' => 'tca', 'Thecc.03G109100' => 'tca', 'Thecc.04G245900' => 'tca', 'Thecc.04G246000' => 'tca', 'Thhalv10003334m.g' => 'esa', 'Thhalv10005508m.g' => 'esa', 'Thhalv10005643m.g' => 'esa', 'Thhalv10007316m.g' => 'esa', 'Thhalv10009006m.g' => 'esa', 'Thhalv10009309m.g' => 'esa', 'Thhalv10014917m.g' => 'esa', 'Thhalv10014919m.g' => 'esa', 'Thhalv10015393m.g' => 'esa', 'Thhalv10016515m.g' => 'esa', 'Thhalv10029242m.g' => 'esa', 'TPR.G16654' => 'tpr', 'TPR.G20589' => 'tpr', 'TPR.G23029' => 'tpr', 'TPR.G27731' => 'tpr', 'TPR.G28889' => 'tpr', 'TPR.G28899' => 'tpr', 'TPR.G30846' => 'tpr', 'TPR.G5452' => 'tpr', 'TPR.G5713' => 'tpr', 'TPR.G9046' => 'tpr', 'TPR.G9061' => 'tpr', 'TWI09G1075' => 'twi', 'TWI12G0806' => 'twi', 'TWI18G0108' => 'twi', 'TWI53G1361' => 'twi', 'TWI73G0185' => 'twi', 'TWI73G0427' => 'twi', 'unitig_37.g12001' => 'ugi', 'unitig_747.g21660' => 'ugi', 'unitig_748.g7232' => 'ugi', 'unitig_748.g7315' => 'ugi', 'unitig_85.g27262' => 'ugi', 'unitig_92.g28220' => 'ugi', 'vmacro02632' => 'vma', 'vmacro08410' => 'vma', 'vmacro08411' => 'vma', 'vmacro15407' => 'vma', 'VMungo0251G3619' => 'vmu', 'VMungo0720G1204' => 'vmu', 'VMungo0720G1918' => 'vmu', 'VMungo0720G2387' => 'vmu', 'VMungo0720G2961' => 'vmu', 'VMungo1215G2154' => 'vmu', 'VMungo1383G2411' => 'vmu', 'Zm00001eb051130' => 'zma', 'Zm00001eb116830' => 'zma', 'Zm00001eb116850' => 'zma', 'Zm00001eb151740' => 'zma', 'Zm00001eb292360' => 'zma', 'Zm00001eb301640' => 'zma' ) $gf_id = 'HOM05D000856' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000856' ) $data_identifier = 'HOM05D000856' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 13, 'ath' => (int) 10, 'atr' => (int) 1, 'acertr' => (int) 8, 'cqu' => (int) 6, 'bca' => (int) 21, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 11, 'car' => (int) 9, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 8, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 5, 'fan' => (int) 16, 'fve' => (int) 6, 'gma' => (int) 11, 'ghi' => (int) 19, 'gra' => (int) 9, 'vvi' => (int) 7, 'han' => (int) 17, 'cav' => (int) 5, 'hma' => (int) 2, 'vpl' => (int) 2, 'sun' => (int) 7, 'lal' => (int) 9, 'lja' => (int) 5, 'lonja' => (int) 9, 'lsa' => (int) 5, 'mes' => (int) 8, 'mpo' => (int) 3, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 10, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 15, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 9, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 9, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 6, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 5, 'spa' => (int) 10, 'tar' => (int) 10, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 11, 'tpr' => (int) 11, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 4, 'vmu' => (int) 7, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb301640' $species_info = array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ) $local_species = 'cqu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000856', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p00010' => 'bna', 'A03p04160' => 'bna', 'A03p17160' => 'bna', 'A04p23370' => 'bna', 'A05p14860' => 'bna', 'A08p37020' => 'bna', 'A09p08050' => 'bna', 'A09p66800' => 'bna', 'A09p67940' => 'bna', 'A10p02680' => 'bna', 'A10p05320' => 'bna', 'Aa31LG1G20560' => 'aar', 'Aa31LG1G20610' => 'aar', 'Aa31LG1G7810' => 'aar', 'Aa31LG5G3590' => 'aar', 'Aa31LG5G6140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3819' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4683' => 'aag', 'Actinidia04480' => 'ach', 'Actinidia05466' => 'ach', 'Actinidia08445' => 'ach', 'Actinidia21170' => 'ach', 'Actinidia24812' => 'ach', 'Actinidia24951' => 'ach', 'Actinidia40088' => 'ach', 'Ah.02g111660' => 'amhyb', 'Ah.11g048900' => 'amhyb', 'Ah.11g049910' => 'amhyb', 'AL1G13870' => 'aly', 'AL1G13880' => 'aly', 'AL1G16760' => 'aly', 'AL390U10020' => 'aly', 'AL4G25520' => 'aly', 'AL6G19890' => 'aly', 'AL6G19900' => 'aly', 'AL6G19910' => 'aly', 'AL8G40100' => 'aly', 'Aqoxy2G03562' => 'aox', 'Aqoxy5G00316' => 'aox', 'Aqoxy5G00926' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1628KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1H403S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2FU6SJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.882I6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8YRY2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YN1SN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AF70II' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZA8L1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F916KL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHRD8H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KTZ8QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S22EMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8M29T' => 'arhy', 'AT1G04270' => 'ath', 'AT1G04280' => 'ath', 'AT1G06750' => 'ath', 'AT1G33850' => 'ath', 'AT2G30630' => 'ath', 'AT5G09490' => 'ath', 'AT5G09500' => 'ath', 'AT5G09510' => 'ath', 'AT5G43640' => 'ath', 'AT5G63070' => 'ath', 'ATR0605G315' => 'atr', 'Atru.chr11.175' => 'acertr', 'Atru.chr11.653' => 'acertr', 'Atru.chr3.1616' => 'acertr', 'Atru.chr4.2230' => 'acertr', 'Atru.chr4.2232' => 'acertr', 'Atru.chr5.1598' => 'acertr', 'Atru.chr5.1600' => 'acertr', 'Atru.chr5.2188' => 'acertr', 'AUR62008326' => 'cqu', 'AUR62011922' => 'cqu', 'AUR62011924' => 'cqu', 'AUR62021771' => 'cqu', 'AUR62032237' => 'cqu', 'AUR62032240' => 'cqu', 'BcaB01g05572' => 'bca', 'BcaB02g10337' => 'bca', 'BcaB04g19944' => 'bca', 'BcaB05g21548' => 'bca', 'BcaB05g21549' => 'bca', 'BcaB05g23227' => 'bca', 'BcaB06g26256' => 'bca', 'BcaB06g26257' => 'bca', 'BcaB06g28379' => 'bca', 'BcaC02g11159' => 'bca', 'BcaC03g13258' => 'bca', 'BcaC03g13259' => 'bca', 'BcaC05g24456' => 'bca', 'BcaC05g24457' => 'bca', 'BcaC07g36922' => 'bca', 'BcaC07g36923' => 'bca', 'BcaC07g42050' => 'bca', 'BcaC07g42176' => 'bca', 'BcaC07g42195' => 'bca', 'BcaC07g42196' => 'bca', 'BcaNung06674' => 'bca', 'BolC2t06351H' => 'bol', 'BolC2t06352H' => 'bol', 'BolC3t12993H' => 'bol', 'BolC4t23525H' => 'bol', 'BolC4t27475H' => 'bol', 'BolC5t29025H' => 'bol', 'BolC5t29026H' => 'bol', 'BolC8t46898H' => 'bol', 'BolC8t46899H' => 'bol', 'BolC8t52630H' => 'bol', 'BolC8t52765H' => 'bol', 'BolC9t53824H' => 'bol', 'BraA03t09760Z' => 'bra', 'BraA03t10990Z' => 'bra', 'BraA05t20413Z' => 'bra', 'BraA08t35602Z' => 'bra', 'BraA09t36458Z' => 'bra', 'BraA09t42018Z' => 'bra', 'BraA09t42129Z' => 'bra', 'BraA10t42536Z' => 'bra', 'BraA10t42537Z' => 'bra', 'C01p10690' => 'bna', 'C02p03890' => 'bna', 'C02p03900' => 'bna', 'C03p04620' => 'bna', 'C04p19870' => 'bna', 'C04p59670' => 'bna', 'C05p02460' => 'bna', 'C05p02470' => 'bna', 'C08p00980' => 'bna', 'C08p00990' => 'bna', 'C08p51030' => 'bna', 'C08p52360' => 'bna', 'C09p09120' => 'bna', 'CAN.G19.15' => 'can', 'CAN.G251.10' => 'can', 'CAN.G251.9' => 'can', 'CAN.G398.24' => 'can', 'CAN.G410.32' => 'can', 'CAN.G881.2' => 'can', 'CANSAT01G3025' => 'cansat', 'CANSAT78G1211' => 'cansat', 'CANSAT78G1218' => 'cansat', 'CANSAT78G1521' => 'cansat', 'CANSAT78G1670' => 'cansat', 'CARHR003600' => 'chi', 'CARHR003610' => 'chi', 'CARHR006290' => 'chi', 'CARHR006430' => 'chi', 'CARHR124110' => 'chi', 'CARHR203870' => 'chi', 'CARHR203880' => 'chi', 'CARHR203890' => 'chi', 'CARHR276880' => 'chi', 'Carub.0001s0346' => 'cru', 'Carub.0001s0347' => 'cru', 'Carub.0001s0607' => 'cru', 'Carub.0003s2768' => 'cru', 'Carub.0003s2769' => 'cru', 'Carub.0004s1178' => 'cru', 'Carub.0006s0806' => 'cru', 'Carub.0006s0807' => 'cru', 'Carub.0006s0808' => 'cru', 'Carub.0008s0501' => 'cru', 'Carub.0008s2379' => 'cru', 'Ca_08655_v3' => 'car', 'Ca_08922_v3' => 'car', 'Ca_08923_v3' => 'car', 'Ca_09119_v3' => 'car', 'Ca_09703_v3' => 'car', 'Ca_09705_v3' => 'car', 'Ca_09835_v3' => 'car', 'Ca_26403_v3' => 'car', 'Ca_30719_v3' => 'car', 'CBR_g17958' => 'cbr', 'CBR_g40516' => 'cbr', 'Cc00_g05350' => 'ccan', 'Cc01_g18690' => 'ccan', 'Cc03_g04830' => 'ccan', 'Cc03_g04850' => 'ccan', 'CDE02G4469' => 'cde', 'CDE06G0883' => 'cde', 'CDE06G1295' => 'cde', 'CDE06G1390' => 'cde', 'CDE07G0584' => 'cde', 'CDE07G1084' => 'cde', 'CDE08G1259' => 'cde', 'Cfa002341' => 'cfa', 'Cfa024337' => 'cfa', 'Ciclev10004749m.g' => 'ccl', 'Ciclev10006127m.g' => 'ccl', 'Ciclev10019720m.g' => 'ccl', 'Ciclev10022652m.g' => 'ccl', 'CiPaw.01G190400' => 'cil', 'CiPaw.01G190500' => 'cil', 'CiPaw.02G116400' => 'cil', 'CiPaw.02G116500' => 'cil', 'CiPaw.04G183000' => 'cil', 'CiPaw.04G183300' => 'cil', 'ClCG05G004610' => 'cla', 'ClCG05G004620' => 'cla', 'ClCG06G006730' => 'cla', 'ClCG06G006740' => 'cla', 'ClCG11G003690' => 'cla', 'COL.COLO4_08276' => 'col', 'COL.COLO4_08277' => 'col', 'COL.COLO4_15787' => 'col', 'COL.COLO4_15789' => 'col', 'Cpa.g.c44815' => 'cpa', 'Cpa.g.sc52.144' => 'cpa', 'Cpa.g.sc58.46' => 'cpa', 'Cpa.g.sc58.47' => 'cpa', 'Cre08.g360900' => 'cre', 'CsaV3_2G013030' => 'csa', 'CsaV3_2G013050' => 'csa', 'CsaV3_2G015620' => 'csa', 'CsaV3_3G012590' => 'csa', 'CsaV3_3G012600' => 'csa', 'CSS0001641' => 'camsi', 'CSS0008310' => 'camsi', 'CSS0013011' => 'camsi', 'CSS0017147' => 'camsi', 'CSS0022970' => 'camsi', 'CSS0025655' => 'camsi', 'CSS0028665' => 'camsi', 'CSS0029117' => 'camsi', 'CSS0032024' => 'camsi', 'CSS0039681' => 'camsi', 'CSS0046516' => 'camsi', 'CSS0050307' => 'camsi', 'DCAR_005871' => 'dca', 'DCAR_007342' => 'dca', 'DCAR_024228' => 'dca', 'DCAR_027277' => 'dca', 'DCAR_030718' => 'dca', 'Dinv20287' => 'din', 'Dinv22461' => 'din', 'Dinv22464' => 'din', 'Dinv29912' => 'din', 'Dinv29913' => 'din', 'Dinv34580' => 'din', 'Dinv34582' => 'din', 'Dinv44632' => 'din', 'Duzib052G0266' => 'dzi', 'Duzib133G0907' => 'dzi', 'Duzib133G1034' => 'dzi', 'Duzib138G0207' => 'dzi', 'Duzib138G0491' => 'dzi', 'Duzib151G0812' => 'dzi', 'Duzib151G1166' => 'dzi', 'Duzib168G0192' => 'dzi', 'Duzib211G0077' => 'dzi', 'Duzib212G0429' => 'dzi', 'Duzib212G0472' => 'dzi', 'ECA233G2617' => 'eca', 'ECA236G4188' => 'eca', 'ECA240G0936' => 'eca', 'ECA240G1129' => 'eca', 'ECA247G0623' => 'eca', 'EL10Ac5g10451' => 'bvu', 'EL10Ac5g10453' => 'bvu', 'EL10Ac5g10894' => 'bvu', 'Eucgr.H00192' => 'egr', 'Eucgr.H00193' => 'egr', 'Eucgr.H00194' => 'egr', 'Eucgr.J01562' => 'egr', 'Eucgr.K03301' => 'egr', 'FAN02G0632' => 'fan', 'FAN05G5378' => 'fan', 'FAN09G3247' => 'fan', 'FAN12G0435' => 'fan', 'FAN12G2426' => 'fan', 'FAN14G1707' => 'fan', 'FAN14G4725' => 'fan', 'FAN15G2071' => 'fan', 'FAN17G3065' => 'fan', 'FAN19G1376' => 'fan', 'FAN20G0354' => 'fan', 'FAN20G2429' => 'fan', 'FAN20G2658' => 'fan', 'FAN24G2343' => 'fan', 'FAN27G2362' => 'fan', 'FAN28G1765' => 'fan', 'FvH4_1g16020' => 'fve', 'FvH4_2g04890' => 'fve', 'FvH4_2g22270' => 'fve', 'FvH4_4g02630' => 'fve', 'FvH4_4g02640' => 'fve', 'FvH4_6g02650' => 'fve', 'Glyma.02G140600' => 'gma', 'Glyma.03G159900' => 'gma', 'Glyma.05G234800' => 'gma', 'Glyma.07G269600' => 'gma', 'Glyma.08G042300' => 'gma', 'Glyma.10G033500' => 'gma', 'Glyma.10G185200' => 'gma', 'Glyma.17G004300' => 'gma', 'Glyma.19G161900' => 'gma', 'Glyma.20G205100' => 'gma', 'Glyma.20G205200' => 'gma', 'Gohir.A01G139101' => 'ghi', 'Gohir.A02G035600' => 'ghi', 'Gohir.A02G117901' => 'ghi', 'Gohir.A07G210100' => 'ghi', 'Gohir.A07G210200' => 'ghi', 'Gohir.A08G061100' => 'ghi', 'Gohir.A09G223000' => 'ghi', 'Gohir.A09G223100' => 'ghi', 'Gohir.A10G113900' => 'ghi', 'Gohir.A10G114000' => 'ghi', 'Gohir.D02G042300' => 'ghi', 'Gohir.D07G216100' => 'ghi', 'Gohir.D07G216200' => 'ghi', 'Gohir.D08G070400' => 'ghi', 'Gohir.D09G225000' => 'ghi', 'Gohir.D09G225100' => 'ghi', 'Gohir.D10G152300' => 'ghi', 'Gohir.D10G153200' => 'ghi', 'Gohir.D11G133701' => 'ghi', 'Gorai.004G074100' => 'gra', 'Gorai.005G046800' => 'gra', 'Gorai.006G246500' => 'gra', 'Gorai.006G246600' => 'gra', 'Gorai.007G142900' => 'gra', 'Gorai.011G171000' => 'gra', 'Gorai.011G171100' => 'gra', 'Gorai.013G104300' => 'gra', 'Gorai.013G104400' => 'gra', 'GSVIVG01000754001' => 'vvi', 'GSVIVG01000756001' => 'vvi', 'GSVIVG01010903001' => 'vvi', 'GSVIVG01017623001' => 'vvi', 'GSVIVG01018113001' => 'vvi', 'GSVIVG01018116001' => 'vvi', 'GSVIVG01018118001' => 'vvi', 'HanXRQChr03g0076211' => 'han', 'HanXRQChr03g0092431' => 'han', 'HanXRQChr03g0092441' => 'han', 'HanXRQChr03g0092591' => 'han', 'HanXRQChr03g0092671' => 'han', 'HanXRQChr03g0092681' => 'han', 'HanXRQChr03g0092691' => 'han', 'HanXRQChr03g0092701' => 'han', 'HanXRQChr03g0092721' => 'han', 'HanXRQChr03g0092731' => 'han', 'HanXRQChr04g0113681' => 'han', 'HanXRQChr10g0281371' => 'han', 'HanXRQChr11g0337141' => 'han', 'HanXRQChr13g0424521' => 'han', 'HanXRQChr13g0424531' => 'han', 'HanXRQChr13g0424541' => 'han', 'HanXRQChr16g0498221' => 'han', 'Haze_04377' => 'cav', 'Haze_11298' => 'cav', 'Haze_24547' => 'cav', 'Haze_24550' => 'cav', 'Haze_26587' => 'cav', 'Hma1.2p1_0650F.1_g195410' => 'hma', 'Hma1.2p1_0893F.1_g233470' => 'hma', 'HPP92_006508' => 'vpl', 'HPP92_024780' => 'vpl', 'Hund02688' => 'sun', 'Hund09380' => 'sun', 'Hund09381' => 'sun', 'Hund09832' => 'sun', 'Hund09833' => 'sun', 'Hund11351' => 'sun', 'Hund11513' => 'sun', 'Lalb_Chr06g0162591' => 'lal', 'Lalb_Chr06g0162601' => 'lal', 'Lalb_Chr06g0169321' => 'lal', 'Lalb_Chr09g0330951' => 'lal', 'Lalb_Chr16g0387631' => 'lal', 'Lalb_Chr21g0306241' => 'lal', 'Lalb_Chr25g0290051' => 'lal', 'Lalb_Chr25g0290061' => 'lal', 'Lalb_Chr25g0290071' => 'lal', 'Lj1g0003876' => 'lja', 'Lj1P1207T36' => 'lonja', 'Lj2C1156G12' => 'lonja', 'Lj3A793G39' => 'lonja', 'Lj3C580G2' => 'lonja', 'Lj3C780G2' => 'lonja', 'Lj3C780T4' => 'lonja', 'Lj3C793G9' => 'lonja', 'Lj4g0012960' => 'lja', 'Lj5g0021252' => 'lja', 'Lj5g0021484' => 'lja', 'Lj5g0024528' => 'lja', 'Lj6A399T12' => 'lonja', 'Lj6A656G65' => 'lonja', 'Lsat_1_v5_gn_3_125500' => 'lsa', 'Lsat_1_v5_gn_3_125540' => 'lsa', 'Lsat_1_v5_gn_5_72701' => 'lsa', 'Lsat_1_v5_gn_8_91560' => 'lsa', 'Lsat_1_v5_gn_9_9640' => 'lsa', 'Manes.01G200600' => 'mes', 'Manes.01G200700' => 'mes', 'Manes.03G168900' => 'mes', 'Manes.03G169000' => 'mes', 'Manes.05G085801' => 'mes', 'Manes.05G086200' => 'mes', 'Manes.15G036700' => 'mes', 'Manes.15G036900' => 'mes', 'Mapoly0004s0172' => 'mpo', 'Mapoly0023s0001' => 'mpo', 'Mapoly0142s0012' => 'mpo', 'MBI01_g32854_MAGBIO' => 'mbi', 'MBI11_g24427_MAGBIO' => 'mbi', 'MBI11_g47319_MAGBIO' => 'mbi', 'MCO01G433' => 'mco', 'MD00G1187800' => 'mdo', 'MD04G1226500' => 'mdo', 'MD05G1203900' => 'mdo', 'MD10G1191100' => 'mdo', 'MD12G1243500' => 'mdo', 'MD13G1207000' => 'mdo', 'MD13G1207100' => 'mdo', 'MD16G1208600' => 'mdo', 'Medtr1g050352' => 'mtr', 'Medtr1g070385' => 'mtr', 'Medtr1g070450' => 'mtr', 'Medtr1g075200' => 'mtr', 'Medtr1g075250' => 'mtr', 'Medtr1g075260' => 'mtr', 'Medtr1g475250' => 'mtr', 'Medtr4g075450' => 'mtr', 'Medtr7g096300' => 'mtr', 'Medtr8g105110' => 'mtr', 'MELO3C006470.2' => 'cme', 'MELO3C006471.2' => 'cme', 'MELO3C020772.2' => 'cme', 'MELO3C026780.2' => 'cme', 'MELO3C026781.2' => 'cme', 'Migut.D00390' => 'egut', 'Migut.G00435' => 'egut', 'Migut.G00436' => 'egut', 'Migut.G00718' => 'egut', 'MSTRG.21891' => 'ama', 'MSTRG.26910' => 'ama', 'MSTRG.4099' => 'ama', 'MSTRG.9925' => 'ama', 'Nitab4.5_0000165g0010' => 'nta', 'Nitab4.5_0000209g0180' => 'nta', 'Nitab4.5_0000244g0440' => 'nta', 'Nitab4.5_0000525g0220' => 'nta', 'Nitab4.5_0001597g0020' => 'nta', 'Nitab4.5_0001878g0040' => 'nta', 'Nitab4.5_0001878g0060' => 'nta', 'Nitab4.5_0002838g0100' => 'nta', 'Nitab4.5_0002838g0120' => 'nta', 'Nitab4.5_0004798g0030' => 'nta', 'Nitab4.5_0005420g0010' => 'nta', 'Nitab4.5_0005507g0010' => 'nta', 'Nitab4.5_0005574g0020' => 'nta', 'Nitab4.5_0005838g0010' => 'nta', 'Nitab4.5_0010580g0020' => 'nta', 'Nn1g02599' => 'nnu', 'Nn1g02608' => 'nnu', 'Nn3g17742' => 'nnu', 'Nn3g19534' => 'nnu', 'Nn3g19535' => 'nnu', 'Oeu008790.1' => 'oeu', 'Oeu008792.1' => 'oeu', 'Oeu032590.1' => 'oeu', 'Oeu035349.1' => 'oeu', 'Oeu049791.1' => 'oeu', 'Os01g0774500' => 'osa', 'Os03g0628800' => 'osa', 'Os03g0798600' => 'osa', 'Os05g0508800' => 'osa', 'Peaxi162Scf00036g02018' => 'pax', 'Peaxi162Scf00578g00032' => 'pax', 'Peaxi162Scf00578g00317' => 'pax', 'Peaxi162Scf00785g00114' => 'pax', 'Peaxi162Scf00813g00119' => 'pax', 'Peaxi162Scf00906g00227' => 'pax', 'PGR004G0875' => 'pgr', 'PGR004G2424' => 'pgr', 'PGR031G1239' => 'pgr', 'PGR031G2474' => 'pgr', 'PGR044G0423' => 'pgr', 'PGSC0003DMG400001128' => 'stu', 'PGSC0003DMG400007336' => 'stu', 'PGSC0003DMG400016318' => 'stu', 'PGSC0003DMG400016319' => 'stu', 'PGSC0003DMG400018074' => 'stu', 'Phvul.001G157700' => 'pvu', 'Phvul.002G148550' => 'pvu', 'Phvul.002G320200' => 'pvu', 'Phvul.003G089200' => 'pvu', 'Phvul.007G126000' => 'pvu', 'Phvul.007G126100' => 'pvu', 'Phvul.007G178000' => 'pvu', 'Phvul.007G178200' => 'pvu', 'Potri.002G043000' => 'ptr', 'Potri.002G043200' => 'ptr', 'Potri.003G123750' => 'ptr', 'Potri.005G055401' => 'ptr', 'Potri.005G219700' => 'ptr', 'Potri.005G220000' => 'ptr', 'Potri.008G161901' => 'ptr', 'Potri.008G162000' => 'ptr', 'Potri.008G162400' => 'ptr', 'Potri.010G076900' => 'ptr', 'Pp3c12_9180' => 'ppa', 'Pp3c13_19770' => 'ppa', 'Pp3c14_22950' => 'ppa', 'Pp3c16_12160' => 'ppa', 'Pp3c27_7820' => 'ppa', 'Pp3c2_3490' => 'ppa', 'Pp3c3_23700' => 'ppa', 'Pp3c3_36520' => 'ppa', 'Pp3c4_15250' => 'ppa', 'PRCOL_00007002' => 'pco', 'Prupe.1G030600' => 'ppe', 'Prupe.1G030700' => 'ppe', 'Prupe.6G345200' => 'ppe', 'Prupe.8G230300' => 'ppe', 'Prupe.8G230500' => 'ppe', 'Psat3g059600' => 'psa', 'Psat5g200920' => 'psa', 'Psat6g056440' => 'psa', 'Psat6g057360' => 'psa', 'Psat6g134120' => 'psa', 'Psat6g134160' => 'psa', 'Psat7g008640' => 'psa', 'Psat7g185240' => 'psa', 'PSO017G1330' => 'pso', 'PSO063G6097' => 'pso', 'PSO170G0835' => 'pso', 'PSO170G2499' => 'pso', 'PSO210G5058' => 'pso', 'PSO210G6154' => 'pso', 'PSO585G0031' => 'pso', 'PSO832G0264' => 'pso', 'PSO832G4288' => 'pso', 'QL03p027355' => 'qlo', 'QL03p027430' => 'qlo', 'QL04p081380' => 'qlo', 'QL06p015642' => 'qlo', 'QL06p015650' => 'qlo', 'QL06p015686' => 'qlo', 'QL12p042927' => 'qlo', 'QL93p1863_0035' => 'qlo', 'RcHm_v2.0_Chr3g0450581' => 'rch', 'RcHm_v2.0_Chr4g0390371' => 'rch', 'RcHm_v2.0_Chr4g0390381' => 'rch', 'RcHm_v2.0_Chr4g0390491' => 'rch', 'RcHm_v2.0_Chr4g0390501' => 'rch', 'RcHm_v2.0_Chr6g0289231' => 'rch', 'Rhsim04G0190400' => 'rsi', 'Rhsim04G0190500' => 'rsi', 'Rhsim04G0190600' => 'rsi', 'Rhsim13G0031400' => 'rsi', 'Rhsim13G0165600' => 'rsi', 'RhsimUnG0114600' => 'rsi', 'RhsimUnG0114700' => 'rsi', 'Sabra02G0034800' => 'sbr', 'Sabra02G0035100' => 'sbr', 'Sabra05G0168600' => 'sbr', 'Sabra05G0168800' => 'sbr', 'Sabra08G0123700' => 'sbr', 'Sabra10G0031900' => 'sbr', 'Sabra13G0039000' => 'sbr', 'SalBow2G0782' => 'sbo', 'SalBow2G1403' => 'sbo', 'SalBow4G0074' => 'sbo', 'SalBow4G2635' => 'sbo', 'SalBow5G3010' => 'sbo', 'Sc05g0000870' => 'sci', 'Sc05g0000890' => 'sci', 'Sc13g0005000' => 'sci', 'Sc13g0005030' => 'sci', 'Sc19g0003790' => 'sci', 'Sc19g0003800' => 'sci', 'Sed0003467' => 'sed', 'Sed0009355' => 'sed', 'Sed0009894' => 'sed', 'Sed0011972' => 'sed', 'Sed0021483' => 'sed', 'Sed0021750' => 'sed', 'Sed0026279' => 'sed', 'SEGI_05312' => 'sgi', 'SEGI_10112' => 'sgi', 'SEGI_15835' => 'sgi', 'SEGI_30386' => 'sgi', 'SEGI_34122' => 'sgi', 'SEGI_35063' => 'sgi', 'SGA_v2.0_scaffold101G29794' => 'sas', 'SGA_v2.0_scaffold1G00573' => 'sas', 'SGA_v2.0_scaffold79G25637' => 'sas', 'SGA_v2.0_scaffold88G27283' => 'sas', 'SGA_v2.0_scaffold88G27285' => 'sas', 'SGA_v2.0_scaffold88G27331' => 'sas', 'SHI09937' => 'shi', 'SMO119G0302' => 'smo', 'SMO137G0231' => 'smo', 'SMO367G1151' => 'smo', 'Solyc02g082000.3' => 'sly', 'Solyc06g031670.3' => 'sly', 'Solyc06g053810.3' => 'sly', 'Solyc07g025457.1' => 'sly', 'Solyc08g059740.1' => 'sly', 'Solyc08g059750.3' => 'sly', 'Solyc09g083370.3' => 'sly', 'Solyc12g038950.3' => 'sly', 'Sopen02g026630' => 'spe', 'Sopen06g018930' => 'spe', 'Sopen06g018940' => 'spe', 'Sopen08g009460' => 'spe', 'Sopen09g032290' => 'spe', 'Sp1g03080' => 'spa', 'Sp1g03090' => 'spa', 'Sp1g05480' => 'spa', 'Sp2g07860' => 'spa', 'Sp2g08430' => 'spa', 'Sp2g08440' => 'spa', 'Sp2g26200' => 'spa', 'Sp4g13170' => 'spa', 'Sp6g33840' => 'spa', 'SpUn1204_0010' => 'spa', 'TAR365G0908' => 'tar', 'TAR381G1270' => 'tar', 'TAR381G1651' => 'tar', 'TAR625G1131' => 'tar', 'TAR633G0962' => 'tar', 'TAR633G1729' => 'tar', 'TAR633G1864' => 'tar', 'TAR636G0221' => 'tar', 'TAR636G0314' => 'tar', 'TAR636G3202' => 'tar', 'THA.LOC104800805' => 'tha', 'THA.LOC104801096' => 'tha', 'THA.LOC104801555' => 'tha', 'THA.LOC104808491' => 'tha', 'THA.LOC104808595' => 'tha', 'THA.LOC104815985' => 'tha', 'THA.LOC104822250' => 'tha', 'THA.LOC104826071' => 'tha', 'Thecc.01G265200' => 'tca', 'Thecc.01G265300' => 'tca', 'Thecc.01G265700' => 'tca', 'Thecc.03G109100' => 'tca', 'Thecc.04G245900' => 'tca', 'Thecc.04G246000' => 'tca', 'Thhalv10003334m.g' => 'esa', 'Thhalv10005508m.g' => 'esa', 'Thhalv10005643m.g' => 'esa', 'Thhalv10007316m.g' => 'esa', 'Thhalv10009006m.g' => 'esa', 'Thhalv10009309m.g' => 'esa', 'Thhalv10014917m.g' => 'esa', 'Thhalv10014919m.g' => 'esa', 'Thhalv10015393m.g' => 'esa', 'Thhalv10016515m.g' => 'esa', 'Thhalv10029242m.g' => 'esa', 'TPR.G16654' => 'tpr', 'TPR.G20589' => 'tpr', 'TPR.G23029' => 'tpr', 'TPR.G27731' => 'tpr', 'TPR.G28889' => 'tpr', 'TPR.G28899' => 'tpr', 'TPR.G30846' => 'tpr', 'TPR.G5452' => 'tpr', 'TPR.G5713' => 'tpr', 'TPR.G9046' => 'tpr', 'TPR.G9061' => 'tpr', 'TWI09G1075' => 'twi', 'TWI12G0806' => 'twi', 'TWI18G0108' => 'twi', 'TWI53G1361' => 'twi', 'TWI73G0185' => 'twi', 'TWI73G0427' => 'twi', 'unitig_37.g12001' => 'ugi', 'unitig_747.g21660' => 'ugi', 'unitig_748.g7232' => 'ugi', 'unitig_748.g7315' => 'ugi', 'unitig_85.g27262' => 'ugi', 'unitig_92.g28220' => 'ugi', 'vmacro02632' => 'vma', 'vmacro08410' => 'vma', 'vmacro08411' => 'vma', 'vmacro15407' => 'vma', 'VMungo0251G3619' => 'vmu', 'VMungo0720G1204' => 'vmu', 'VMungo0720G1918' => 'vmu', 'VMungo0720G2387' => 'vmu', 'VMungo0720G2961' => 'vmu', 'VMungo1215G2154' => 'vmu', 'VMungo1383G2411' => 'vmu', 'Zm00001eb051130' => 'zma', 'Zm00001eb116830' => 'zma', 'Zm00001eb116850' => 'zma', 'Zm00001eb151740' => 'zma', 'Zm00001eb292360' => 'zma', 'Zm00001eb301640' => 'zma' ), 'gf_id' => 'HOM05D000856', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000856' ), 'data_identifier' => 'HOM05D000856', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000856', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p00010' => 'bna', 'A03p04160' => 'bna', 'A03p17160' => 'bna', 'A04p23370' => 'bna', 'A05p14860' => 'bna', 'A08p37020' => 'bna', 'A09p08050' => 'bna', 'A09p66800' => 'bna', 'A09p67940' => 'bna', 'A10p02680' => 'bna', 'A10p05320' => 'bna', 'Aa31LG1G20560' => 'aar', 'Aa31LG1G20610' => 'aar', 'Aa31LG1G7810' => 'aar', 'Aa31LG5G3590' => 'aar', 'Aa31LG5G6140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3819' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4683' => 'aag', 'Actinidia04480' => 'ach', 'Actinidia05466' => 'ach', 'Actinidia08445' => 'ach', 'Actinidia21170' => 'ach', 'Actinidia24812' => 'ach', 'Actinidia24951' => 'ach', 'Actinidia40088' => 'ach', 'Ah.02g111660' => 'amhyb', 'Ah.11g048900' => 'amhyb', 'Ah.11g049910' => 'amhyb', 'AL1G13870' => 'aly', 'AL1G13880' => 'aly', 'AL1G16760' => 'aly', 'AL390U10020' => 'aly', 'AL4G25520' => 'aly', 'AL6G19890' => 'aly', 'AL6G19900' => 'aly', 'AL6G19910' => 'aly', 'AL8G40100' => 'aly', 'Aqoxy2G03562' => 'aox', 'Aqoxy5G00316' => 'aox', 'Aqoxy5G00926' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1628KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1H403S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2FU6SJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.882I6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8YRY2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YN1SN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AF70II' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZA8L1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F916KL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHRD8H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KTZ8QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S22EMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8M29T' => 'arhy', 'AT1G04270' => 'ath', 'AT1G04280' => 'ath', 'AT1G06750' => 'ath', 'AT1G33850' => 'ath', 'AT2G30630' => 'ath', 'AT5G09490' => 'ath', 'AT5G09500' => 'ath', 'AT5G09510' => 'ath', 'AT5G43640' => 'ath', 'AT5G63070' => 'ath', 'ATR0605G315' => 'atr', 'Atru.chr11.175' => 'acertr', 'Atru.chr11.653' => 'acertr', 'Atru.chr3.1616' => 'acertr', 'Atru.chr4.2230' => 'acertr', 'Atru.chr4.2232' => 'acertr', 'Atru.chr5.1598' => 'acertr', 'Atru.chr5.1600' => 'acertr', 'Atru.chr5.2188' => 'acertr', 'AUR62008326' => 'cqu', 'AUR62011922' => 'cqu', 'AUR62011924' => 'cqu', 'AUR62021771' => 'cqu', 'AUR62032237' => 'cqu', 'AUR62032240' => 'cqu', 'BcaB01g05572' => 'bca', 'BcaB02g10337' => 'bca', 'BcaB04g19944' => 'bca', 'BcaB05g21548' => 'bca', 'BcaB05g21549' => 'bca', 'BcaB05g23227' => 'bca', 'BcaB06g26256' => 'bca', 'BcaB06g26257' => 'bca', 'BcaB06g28379' => 'bca', 'BcaC02g11159' => 'bca', 'BcaC03g13258' => 'bca', 'BcaC03g13259' => 'bca', 'BcaC05g24456' => 'bca', 'BcaC05g24457' => 'bca', 'BcaC07g36922' => 'bca', 'BcaC07g36923' => 'bca', 'BcaC07g42050' => 'bca', 'BcaC07g42176' => 'bca', 'BcaC07g42195' => 'bca', 'BcaC07g42196' => 'bca', 'BcaNung06674' => 'bca', 'BolC2t06351H' => 'bol', 'BolC2t06352H' => 'bol', 'BolC3t12993H' => 'bol', 'BolC4t23525H' => 'bol', 'BolC4t27475H' => 'bol', 'BolC5t29025H' => 'bol', 'BolC5t29026H' => 'bol', 'BolC8t46898H' => 'bol', 'BolC8t46899H' => 'bol', 'BolC8t52630H' => 'bol', 'BolC8t52765H' => 'bol', 'BolC9t53824H' => 'bol', 'BraA03t09760Z' => 'bra', 'BraA03t10990Z' => 'bra', 'BraA05t20413Z' => 'bra', 'BraA08t35602Z' => 'bra', 'BraA09t36458Z' => 'bra', 'BraA09t42018Z' => 'bra', 'BraA09t42129Z' => 'bra', 'BraA10t42536Z' => 'bra', 'BraA10t42537Z' => 'bra', 'C01p10690' => 'bna', 'C02p03890' => 'bna', 'C02p03900' => 'bna', 'C03p04620' => 'bna', 'C04p19870' => 'bna', 'C04p59670' => 'bna', 'C05p02460' => 'bna', 'C05p02470' => 'bna', 'C08p00980' => 'bna', 'C08p00990' => 'bna', 'C08p51030' => 'bna', 'C08p52360' => 'bna', 'C09p09120' => 'bna', 'CAN.G19.15' => 'can', 'CAN.G251.10' => 'can', 'CAN.G251.9' => 'can', 'CAN.G398.24' => 'can', 'CAN.G410.32' => 'can', 'CAN.G881.2' => 'can', 'CANSAT01G3025' => 'cansat', 'CANSAT78G1211' => 'cansat', 'CANSAT78G1218' => 'cansat', 'CANSAT78G1521' => 'cansat', 'CANSAT78G1670' => 'cansat', 'CARHR003600' => 'chi', 'CARHR003610' => 'chi', 'CARHR006290' => 'chi', 'CARHR006430' => 'chi', 'CARHR124110' => 'chi', 'CARHR203870' => 'chi', 'CARHR203880' => 'chi', 'CARHR203890' => 'chi', 'CARHR276880' => 'chi', 'Carub.0001s0346' => 'cru', 'Carub.0001s0347' => 'cru', 'Carub.0001s0607' => 'cru', 'Carub.0003s2768' => 'cru', 'Carub.0003s2769' => 'cru', 'Carub.0004s1178' => 'cru', 'Carub.0006s0806' => 'cru', 'Carub.0006s0807' => 'cru', 'Carub.0006s0808' => 'cru', 'Carub.0008s0501' => 'cru', 'Carub.0008s2379' => 'cru', 'Ca_08655_v3' => 'car', 'Ca_08922_v3' => 'car', 'Ca_08923_v3' => 'car', 'Ca_09119_v3' => 'car', 'Ca_09703_v3' => 'car', 'Ca_09705_v3' => 'car', 'Ca_09835_v3' => 'car', 'Ca_26403_v3' => 'car', 'Ca_30719_v3' => 'car', 'CBR_g17958' => 'cbr', 'CBR_g40516' => 'cbr', 'Cc00_g05350' => 'ccan', 'Cc01_g18690' => 'ccan', 'Cc03_g04830' => 'ccan', 'Cc03_g04850' => 'ccan', 'CDE02G4469' => 'cde', 'CDE06G0883' => 'cde', 'CDE06G1295' => 'cde', 'CDE06G1390' => 'cde', 'CDE07G0584' => 'cde', 'CDE07G1084' => 'cde', 'CDE08G1259' => 'cde', 'Cfa002341' => 'cfa', 'Cfa024337' => 'cfa', 'Ciclev10004749m.g' => 'ccl', 'Ciclev10006127m.g' => 'ccl', 'Ciclev10019720m.g' => 'ccl', 'Ciclev10022652m.g' => 'ccl', 'CiPaw.01G190400' => 'cil', 'CiPaw.01G190500' => 'cil', 'CiPaw.02G116400' => 'cil', 'CiPaw.02G116500' => 'cil', 'CiPaw.04G183000' => 'cil', 'CiPaw.04G183300' => 'cil', 'ClCG05G004610' => 'cla', 'ClCG05G004620' => 'cla', 'ClCG06G006730' => 'cla', 'ClCG06G006740' => 'cla', 'ClCG11G003690' => 'cla', 'COL.COLO4_08276' => 'col', 'COL.COLO4_08277' => 'col', 'COL.COLO4_15787' => 'col', 'COL.COLO4_15789' => 'col', 'Cpa.g.c44815' => 'cpa', 'Cpa.g.sc52.144' => 'cpa', 'Cpa.g.sc58.46' => 'cpa', 'Cpa.g.sc58.47' => 'cpa', 'Cre08.g360900' => 'cre', 'CsaV3_2G013030' => 'csa', 'CsaV3_2G013050' => 'csa', 'CsaV3_2G015620' => 'csa', 'CsaV3_3G012590' => 'csa', 'CsaV3_3G012600' => 'csa', 'CSS0001641' => 'camsi', 'CSS0008310' => 'camsi', 'CSS0013011' => 'camsi', 'CSS0017147' => 'camsi', 'CSS0022970' => 'camsi', 'CSS0025655' => 'camsi', 'CSS0028665' => 'camsi', 'CSS0029117' => 'camsi', 'CSS0032024' => 'camsi', 'CSS0039681' => 'camsi', 'CSS0046516' => 'camsi', 'CSS0050307' => 'camsi', 'DCAR_005871' => 'dca', 'DCAR_007342' => 'dca', 'DCAR_024228' => 'dca', 'DCAR_027277' => 'dca', 'DCAR_030718' => 'dca', 'Dinv20287' => 'din', 'Dinv22461' => 'din', 'Dinv22464' => 'din', 'Dinv29912' => 'din', 'Dinv29913' => 'din', 'Dinv34580' => 'din', 'Dinv34582' => 'din', 'Dinv44632' => 'din', 'Duzib052G0266' => 'dzi', 'Duzib133G0907' => 'dzi', 'Duzib133G1034' => 'dzi', 'Duzib138G0207' => 'dzi', 'Duzib138G0491' => 'dzi', 'Duzib151G0812' => 'dzi', 'Duzib151G1166' => 'dzi', 'Duzib168G0192' => 'dzi', 'Duzib211G0077' => 'dzi', 'Duzib212G0429' => 'dzi', 'Duzib212G0472' => 'dzi', 'ECA233G2617' => 'eca', 'ECA236G4188' => 'eca', 'ECA240G0936' => 'eca', 'ECA240G1129' => 'eca', 'ECA247G0623' => 'eca', 'EL10Ac5g10451' => 'bvu', 'EL10Ac5g10453' => 'bvu', 'EL10Ac5g10894' => 'bvu', 'Eucgr.H00192' => 'egr', 'Eucgr.H00193' => 'egr', 'Eucgr.H00194' => 'egr', 'Eucgr.J01562' => 'egr', 'Eucgr.K03301' => 'egr', 'FAN02G0632' => 'fan', 'FAN05G5378' => 'fan', 'FAN09G3247' => 'fan', 'FAN12G0435' => 'fan', 'FAN12G2426' => 'fan', 'FAN14G1707' => 'fan', 'FAN14G4725' => 'fan', 'FAN15G2071' => 'fan', 'FAN17G3065' => 'fan', 'FAN19G1376' => 'fan', 'FAN20G0354' => 'fan', 'FAN20G2429' => 'fan', 'FAN20G2658' => 'fan', 'FAN24G2343' => 'fan', 'FAN27G2362' => 'fan', 'FAN28G1765' => 'fan', 'FvH4_1g16020' => 'fve', 'FvH4_2g04890' => 'fve', 'FvH4_2g22270' => 'fve', 'FvH4_4g02630' => 'fve', 'FvH4_4g02640' => 'fve', 'FvH4_6g02650' => 'fve', 'Glyma.02G140600' => 'gma', 'Glyma.03G159900' => 'gma', 'Glyma.05G234800' => 'gma', 'Glyma.07G269600' => 'gma', 'Glyma.08G042300' => 'gma', 'Glyma.10G033500' => 'gma', 'Glyma.10G185200' => 'gma', 'Glyma.17G004300' => 'gma', 'Glyma.19G161900' => 'gma', 'Glyma.20G205100' => 'gma', 'Glyma.20G205200' => 'gma', 'Gohir.A01G139101' => 'ghi', 'Gohir.A02G035600' => 'ghi', 'Gohir.A02G117901' => 'ghi', 'Gohir.A07G210100' => 'ghi', 'Gohir.A07G210200' => 'ghi', 'Gohir.A08G061100' => 'ghi', 'Gohir.A09G223000' => 'ghi', 'Gohir.A09G223100' => 'ghi', 'Gohir.A10G113900' => 'ghi', 'Gohir.A10G114000' => 'ghi', 'Gohir.D02G042300' => 'ghi', 'Gohir.D07G216100' => 'ghi', 'Gohir.D07G216200' => 'ghi', 'Gohir.D08G070400' => 'ghi', 'Gohir.D09G225000' => 'ghi', 'Gohir.D09G225100' => 'ghi', 'Gohir.D10G152300' => 'ghi', 'Gohir.D10G153200' => 'ghi', 'Gohir.D11G133701' => 'ghi', 'Gorai.004G074100' => 'gra', 'Gorai.005G046800' => 'gra', 'Gorai.006G246500' => 'gra', 'Gorai.006G246600' => 'gra', 'Gorai.007G142900' => 'gra', 'Gorai.011G171000' => 'gra', 'Gorai.011G171100' => 'gra', 'Gorai.013G104300' => 'gra', 'Gorai.013G104400' => 'gra', 'GSVIVG01000754001' => 'vvi', 'GSVIVG01000756001' => 'vvi', 'GSVIVG01010903001' => 'vvi', 'GSVIVG01017623001' => 'vvi', 'GSVIVG01018113001' => 'vvi', 'GSVIVG01018116001' => 'vvi', 'GSVIVG01018118001' => 'vvi', 'HanXRQChr03g0076211' => 'han', 'HanXRQChr03g0092431' => 'han', 'HanXRQChr03g0092441' => 'han', 'HanXRQChr03g0092591' => 'han', 'HanXRQChr03g0092671' => 'han', 'HanXRQChr03g0092681' => 'han', 'HanXRQChr03g0092691' => 'han', 'HanXRQChr03g0092701' => 'han', 'HanXRQChr03g0092721' => 'han', 'HanXRQChr03g0092731' => 'han', 'HanXRQChr04g0113681' => 'han', 'HanXRQChr10g0281371' => 'han', 'HanXRQChr11g0337141' => 'han', 'HanXRQChr13g0424521' => 'han', 'HanXRQChr13g0424531' => 'han', 'HanXRQChr13g0424541' => 'han', 'HanXRQChr16g0498221' => 'han', 'Haze_04377' => 'cav', 'Haze_11298' => 'cav', 'Haze_24547' => 'cav', 'Haze_24550' => 'cav', 'Haze_26587' => 'cav', 'Hma1.2p1_0650F.1_g195410' => 'hma', 'Hma1.2p1_0893F.1_g233470' => 'hma', 'HPP92_006508' => 'vpl', 'HPP92_024780' => 'vpl', 'Hund02688' => 'sun', 'Hund09380' => 'sun', 'Hund09381' => 'sun', 'Hund09832' => 'sun', 'Hund09833' => 'sun', 'Hund11351' => 'sun', 'Hund11513' => 'sun', 'Lalb_Chr06g0162591' => 'lal', 'Lalb_Chr06g0162601' => 'lal', 'Lalb_Chr06g0169321' => 'lal', 'Lalb_Chr09g0330951' => 'lal', 'Lalb_Chr16g0387631' => 'lal', 'Lalb_Chr21g0306241' => 'lal', 'Lalb_Chr25g0290051' => 'lal', 'Lalb_Chr25g0290061' => 'lal', 'Lalb_Chr25g0290071' => 'lal', 'Lj1g0003876' => 'lja', 'Lj1P1207T36' => 'lonja', 'Lj2C1156G12' => 'lonja', 'Lj3A793G39' => 'lonja', 'Lj3C580G2' => 'lonja', 'Lj3C780G2' => 'lonja', 'Lj3C780T4' => 'lonja', 'Lj3C793G9' => 'lonja', 'Lj4g0012960' => 'lja', 'Lj5g0021252' => 'lja', 'Lj5g0021484' => 'lja', 'Lj5g0024528' => 'lja', 'Lj6A399T12' => 'lonja', 'Lj6A656G65' => 'lonja', 'Lsat_1_v5_gn_3_125500' => 'lsa', 'Lsat_1_v5_gn_3_125540' => 'lsa', 'Lsat_1_v5_gn_5_72701' => 'lsa', 'Lsat_1_v5_gn_8_91560' => 'lsa', 'Lsat_1_v5_gn_9_9640' => 'lsa', 'Manes.01G200600' => 'mes', 'Manes.01G200700' => 'mes', 'Manes.03G168900' => 'mes', 'Manes.03G169000' => 'mes', 'Manes.05G085801' => 'mes', 'Manes.05G086200' => 'mes', 'Manes.15G036700' => 'mes', 'Manes.15G036900' => 'mes', 'Mapoly0004s0172' => 'mpo', 'Mapoly0023s0001' => 'mpo', 'Mapoly0142s0012' => 'mpo', 'MBI01_g32854_MAGBIO' => 'mbi', 'MBI11_g24427_MAGBIO' => 'mbi', 'MBI11_g47319_MAGBIO' => 'mbi', 'MCO01G433' => 'mco', 'MD00G1187800' => 'mdo', 'MD04G1226500' => 'mdo', 'MD05G1203900' => 'mdo', 'MD10G1191100' => 'mdo', 'MD12G1243500' => 'mdo', 'MD13G1207000' => 'mdo', 'MD13G1207100' => 'mdo', 'MD16G1208600' => 'mdo', 'Medtr1g050352' => 'mtr', 'Medtr1g070385' => 'mtr', 'Medtr1g070450' => 'mtr', 'Medtr1g075200' => 'mtr', 'Medtr1g075250' => 'mtr', 'Medtr1g075260' => 'mtr', 'Medtr1g475250' => 'mtr', 'Medtr4g075450' => 'mtr', 'Medtr7g096300' => 'mtr', 'Medtr8g105110' => 'mtr', 'MELO3C006470.2' => 'cme', 'MELO3C006471.2' => 'cme', 'MELO3C020772.2' => 'cme', 'MELO3C026780.2' => 'cme', 'MELO3C026781.2' => 'cme', 'Migut.D00390' => 'egut', 'Migut.G00435' => 'egut', 'Migut.G00436' => 'egut', 'Migut.G00718' => 'egut', 'MSTRG.21891' => 'ama', 'MSTRG.26910' => 'ama', 'MSTRG.4099' => 'ama', 'MSTRG.9925' => 'ama', 'Nitab4.5_0000165g0010' => 'nta', 'Nitab4.5_0000209g0180' => 'nta', 'Nitab4.5_0000244g0440' => 'nta', 'Nitab4.5_0000525g0220' => 'nta', 'Nitab4.5_0001597g0020' => 'nta', 'Nitab4.5_0001878g0040' => 'nta', 'Nitab4.5_0001878g0060' => 'nta', 'Nitab4.5_0002838g0100' => 'nta', 'Nitab4.5_0002838g0120' => 'nta', 'Nitab4.5_0004798g0030' => 'nta', 'Nitab4.5_0005420g0010' => 'nta', 'Nitab4.5_0005507g0010' => 'nta', 'Nitab4.5_0005574g0020' => 'nta', 'Nitab4.5_0005838g0010' => 'nta', 'Nitab4.5_0010580g0020' => 'nta', 'Nn1g02599' => 'nnu', 'Nn1g02608' => 'nnu', 'Nn3g17742' => 'nnu', 'Nn3g19534' => 'nnu', 'Nn3g19535' => 'nnu', 'Oeu008790.1' => 'oeu', 'Oeu008792.1' => 'oeu', 'Oeu032590.1' => 'oeu', 'Oeu035349.1' => 'oeu', 'Oeu049791.1' => 'oeu', 'Os01g0774500' => 'osa', 'Os03g0628800' => 'osa', 'Os03g0798600' => 'osa', 'Os05g0508800' => 'osa', 'Peaxi162Scf00036g02018' => 'pax', 'Peaxi162Scf00578g00032' => 'pax', 'Peaxi162Scf00578g00317' => 'pax', 'Peaxi162Scf00785g00114' => 'pax', 'Peaxi162Scf00813g00119' => 'pax', 'Peaxi162Scf00906g00227' => 'pax', 'PGR004G0875' => 'pgr', 'PGR004G2424' => 'pgr', 'PGR031G1239' => 'pgr', 'PGR031G2474' => 'pgr', 'PGR044G0423' => 'pgr', 'PGSC0003DMG400001128' => 'stu', 'PGSC0003DMG400007336' => 'stu', 'PGSC0003DMG400016318' => 'stu', 'PGSC0003DMG400016319' => 'stu', 'PGSC0003DMG400018074' => 'stu', 'Phvul.001G157700' => 'pvu', 'Phvul.002G148550' => 'pvu', 'Phvul.002G320200' => 'pvu', 'Phvul.003G089200' => 'pvu', 'Phvul.007G126000' => 'pvu', 'Phvul.007G126100' => 'pvu', 'Phvul.007G178000' => 'pvu', 'Phvul.007G178200' => 'pvu', 'Potri.002G043000' => 'ptr', 'Potri.002G043200' => 'ptr', 'Potri.003G123750' => 'ptr', 'Potri.005G055401' => 'ptr', 'Potri.005G219700' => 'ptr', 'Potri.005G220000' => 'ptr', 'Potri.008G161901' => 'ptr', 'Potri.008G162000' => 'ptr', 'Potri.008G162400' => 'ptr', 'Potri.010G076900' => 'ptr', 'Pp3c12_9180' => 'ppa', 'Pp3c13_19770' => 'ppa', 'Pp3c14_22950' => 'ppa', 'Pp3c16_12160' => 'ppa', 'Pp3c27_7820' => 'ppa', 'Pp3c2_3490' => 'ppa', 'Pp3c3_23700' => 'ppa', 'Pp3c3_36520' => 'ppa', 'Pp3c4_15250' => 'ppa', 'PRCOL_00007002' => 'pco', 'Prupe.1G030600' => 'ppe', 'Prupe.1G030700' => 'ppe', 'Prupe.6G345200' => 'ppe', 'Prupe.8G230300' => 'ppe', 'Prupe.8G230500' => 'ppe', 'Psat3g059600' => 'psa', 'Psat5g200920' => 'psa', 'Psat6g056440' => 'psa', 'Psat6g057360' => 'psa', 'Psat6g134120' => 'psa', 'Psat6g134160' => 'psa', 'Psat7g008640' => 'psa', 'Psat7g185240' => 'psa', 'PSO017G1330' => 'pso', 'PSO063G6097' => 'pso', 'PSO170G0835' => 'pso', 'PSO170G2499' => 'pso', 'PSO210G5058' => 'pso', 'PSO210G6154' => 'pso', 'PSO585G0031' => 'pso', 'PSO832G0264' => 'pso', 'PSO832G4288' => 'pso', 'QL03p027355' => 'qlo', 'QL03p027430' => 'qlo', 'QL04p081380' => 'qlo', 'QL06p015642' => 'qlo', 'QL06p015650' => 'qlo', 'QL06p015686' => 'qlo', 'QL12p042927' => 'qlo', 'QL93p1863_0035' => 'qlo', 'RcHm_v2.0_Chr3g0450581' => 'rch', 'RcHm_v2.0_Chr4g0390371' => 'rch', 'RcHm_v2.0_Chr4g0390381' => 'rch', 'RcHm_v2.0_Chr4g0390491' => 'rch', 'RcHm_v2.0_Chr4g0390501' => 'rch', 'RcHm_v2.0_Chr6g0289231' => 'rch', 'Rhsim04G0190400' => 'rsi', 'Rhsim04G0190500' => 'rsi', 'Rhsim04G0190600' => 'rsi', 'Rhsim13G0031400' => 'rsi', 'Rhsim13G0165600' => 'rsi', 'RhsimUnG0114600' => 'rsi', 'RhsimUnG0114700' => 'rsi', 'Sabra02G0034800' => 'sbr', 'Sabra02G0035100' => 'sbr', 'Sabra05G0168600' => 'sbr', 'Sabra05G0168800' => 'sbr', 'Sabra08G0123700' => 'sbr', 'Sabra10G0031900' => 'sbr', 'Sabra13G0039000' => 'sbr', 'SalBow2G0782' => 'sbo', 'SalBow2G1403' => 'sbo', 'SalBow4G0074' => 'sbo', 'SalBow4G2635' => 'sbo', 'SalBow5G3010' => 'sbo', 'Sc05g0000870' => 'sci', 'Sc05g0000890' => 'sci', 'Sc13g0005000' => 'sci', 'Sc13g0005030' => 'sci', 'Sc19g0003790' => 'sci', 'Sc19g0003800' => 'sci', 'Sed0003467' => 'sed', 'Sed0009355' => 'sed', 'Sed0009894' => 'sed', 'Sed0011972' => 'sed', 'Sed0021483' => 'sed', 'Sed0021750' => 'sed', 'Sed0026279' => 'sed', 'SEGI_05312' => 'sgi', 'SEGI_10112' => 'sgi', 'SEGI_15835' => 'sgi', 'SEGI_30386' => 'sgi', 'SEGI_34122' => 'sgi', 'SEGI_35063' => 'sgi', 'SGA_v2.0_scaffold101G29794' => 'sas', 'SGA_v2.0_scaffold1G00573' => 'sas', 'SGA_v2.0_scaffold79G25637' => 'sas', 'SGA_v2.0_scaffold88G27283' => 'sas', 'SGA_v2.0_scaffold88G27285' => 'sas', 'SGA_v2.0_scaffold88G27331' => 'sas', 'SHI09937' => 'shi', 'SMO119G0302' => 'smo', 'SMO137G0231' => 'smo', 'SMO367G1151' => 'smo', 'Solyc02g082000.3' => 'sly', 'Solyc06g031670.3' => 'sly', 'Solyc06g053810.3' => 'sly', 'Solyc07g025457.1' => 'sly', 'Solyc08g059740.1' => 'sly', 'Solyc08g059750.3' => 'sly', 'Solyc09g083370.3' => 'sly', 'Solyc12g038950.3' => 'sly', 'Sopen02g026630' => 'spe', 'Sopen06g018930' => 'spe', 'Sopen06g018940' => 'spe', 'Sopen08g009460' => 'spe', 'Sopen09g032290' => 'spe', 'Sp1g03080' => 'spa', 'Sp1g03090' => 'spa', 'Sp1g05480' => 'spa', 'Sp2g07860' => 'spa', 'Sp2g08430' => 'spa', 'Sp2g08440' => 'spa', 'Sp2g26200' => 'spa', 'Sp4g13170' => 'spa', 'Sp6g33840' => 'spa', 'SpUn1204_0010' => 'spa', 'TAR365G0908' => 'tar', 'TAR381G1270' => 'tar', 'TAR381G1651' => 'tar', 'TAR625G1131' => 'tar', 'TAR633G0962' => 'tar', 'TAR633G1729' => 'tar', 'TAR633G1864' => 'tar', 'TAR636G0221' => 'tar', 'TAR636G0314' => 'tar', 'TAR636G3202' => 'tar', 'THA.LOC104800805' => 'tha', 'THA.LOC104801096' => 'tha', 'THA.LOC104801555' => 'tha', 'THA.LOC104808491' => 'tha', 'THA.LOC104808595' => 'tha', 'THA.LOC104815985' => 'tha', 'THA.LOC104822250' => 'tha', 'THA.LOC104826071' => 'tha', 'Thecc.01G265200' => 'tca', 'Thecc.01G265300' => 'tca', 'Thecc.01G265700' => 'tca', 'Thecc.03G109100' => 'tca', 'Thecc.04G245900' => 'tca', 'Thecc.04G246000' => 'tca', 'Thhalv10003334m.g' => 'esa', 'Thhalv10005508m.g' => 'esa', 'Thhalv10005643m.g' => 'esa', 'Thhalv10007316m.g' => 'esa', 'Thhalv10009006m.g' => 'esa', 'Thhalv10009309m.g' => 'esa', 'Thhalv10014917m.g' => 'esa', 'Thhalv10014919m.g' => 'esa', 'Thhalv10015393m.g' => 'esa', 'Thhalv10016515m.g' => 'esa', 'Thhalv10029242m.g' => 'esa', 'TPR.G16654' => 'tpr', 'TPR.G20589' => 'tpr', 'TPR.G23029' => 'tpr', 'TPR.G27731' => 'tpr', 'TPR.G28889' => 'tpr', 'TPR.G28899' => 'tpr', 'TPR.G30846' => 'tpr', 'TPR.G5452' => 'tpr', 'TPR.G5713' => 'tpr', 'TPR.G9046' => 'tpr', 'TPR.G9061' => 'tpr', 'TWI09G1075' => 'twi', 'TWI12G0806' => 'twi', 'TWI18G0108' => 'twi', 'TWI53G1361' => 'twi', 'TWI73G0185' => 'twi', 'TWI73G0427' => 'twi', 'unitig_37.g12001' => 'ugi', 'unitig_747.g21660' => 'ugi', 'unitig_748.g7232' => 'ugi', 'unitig_748.g7315' => 'ugi', 'unitig_85.g27262' => 'ugi', 'unitig_92.g28220' => 'ugi', 'vmacro02632' => 'vma', 'vmacro08410' => 'vma', 'vmacro08411' => 'vma', 'vmacro15407' => 'vma', 'VMungo0251G3619' => 'vmu', 'VMungo0720G1204' => 'vmu', 'VMungo0720G1918' => 'vmu', 'VMungo0720G2387' => 'vmu', 'VMungo0720G2961' => 'vmu', 'VMungo1215G2154' => 'vmu', 'VMungo1383G2411' => 'vmu', 'Zm00001eb051130' => 'zma', 'Zm00001eb116830' => 'zma', 'Zm00001eb116850' => 'zma', 'Zm00001eb151740' => 'zma', 'Zm00001eb292360' => 'zma', 'Zm00001eb301640' => 'zma' ) $gf_id = 'HOM05D000856' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000856' ) $data_identifier = 'HOM05D000856' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 13, 'ath' => (int) 10, 'atr' => (int) 1, 'acertr' => (int) 8, 'cqu' => (int) 6, 'bca' => (int) 21, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 11, 'car' => (int) 9, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 8, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 5, 'fan' => (int) 16, 'fve' => (int) 6, 'gma' => (int) 11, 'ghi' => (int) 19, 'gra' => (int) 9, 'vvi' => (int) 7, 'han' => (int) 17, 'cav' => (int) 5, 'hma' => (int) 2, 'vpl' => (int) 2, 'sun' => (int) 7, 'lal' => (int) 9, 'lja' => (int) 5, 'lonja' => (int) 9, 'lsa' => (int) 5, 'mes' => (int) 8, 'mpo' => (int) 3, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 10, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 15, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 9, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 9, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 6, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 5, 'spa' => (int) 10, 'tar' => (int) 10, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 11, 'tpr' => (int) 11, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 4, 'vmu' => (int) 7, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb301640' $species_info = array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ) $local_species = 'cre' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000856', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p00010' => 'bna', 'A03p04160' => 'bna', 'A03p17160' => 'bna', 'A04p23370' => 'bna', 'A05p14860' => 'bna', 'A08p37020' => 'bna', 'A09p08050' => 'bna', 'A09p66800' => 'bna', 'A09p67940' => 'bna', 'A10p02680' => 'bna', 'A10p05320' => 'bna', 'Aa31LG1G20560' => 'aar', 'Aa31LG1G20610' => 'aar', 'Aa31LG1G7810' => 'aar', 'Aa31LG5G3590' => 'aar', 'Aa31LG5G6140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3819' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4683' => 'aag', 'Actinidia04480' => 'ach', 'Actinidia05466' => 'ach', 'Actinidia08445' => 'ach', 'Actinidia21170' => 'ach', 'Actinidia24812' => 'ach', 'Actinidia24951' => 'ach', 'Actinidia40088' => 'ach', 'Ah.02g111660' => 'amhyb', 'Ah.11g048900' => 'amhyb', 'Ah.11g049910' => 'amhyb', 'AL1G13870' => 'aly', 'AL1G13880' => 'aly', 'AL1G16760' => 'aly', 'AL390U10020' => 'aly', 'AL4G25520' => 'aly', 'AL6G19890' => 'aly', 'AL6G19900' => 'aly', 'AL6G19910' => 'aly', 'AL8G40100' => 'aly', 'Aqoxy2G03562' => 'aox', 'Aqoxy5G00316' => 'aox', 'Aqoxy5G00926' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1628KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1H403S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2FU6SJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.882I6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8YRY2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YN1SN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AF70II' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZA8L1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F916KL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHRD8H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KTZ8QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S22EMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8M29T' => 'arhy', 'AT1G04270' => 'ath', 'AT1G04280' => 'ath', 'AT1G06750' => 'ath', 'AT1G33850' => 'ath', 'AT2G30630' => 'ath', 'AT5G09490' => 'ath', 'AT5G09500' => 'ath', 'AT5G09510' => 'ath', 'AT5G43640' => 'ath', 'AT5G63070' => 'ath', 'ATR0605G315' => 'atr', 'Atru.chr11.175' => 'acertr', 'Atru.chr11.653' => 'acertr', 'Atru.chr3.1616' => 'acertr', 'Atru.chr4.2230' => 'acertr', 'Atru.chr4.2232' => 'acertr', 'Atru.chr5.1598' => 'acertr', 'Atru.chr5.1600' => 'acertr', 'Atru.chr5.2188' => 'acertr', 'AUR62008326' => 'cqu', 'AUR62011922' => 'cqu', 'AUR62011924' => 'cqu', 'AUR62021771' => 'cqu', 'AUR62032237' => 'cqu', 'AUR62032240' => 'cqu', 'BcaB01g05572' => 'bca', 'BcaB02g10337' => 'bca', 'BcaB04g19944' => 'bca', 'BcaB05g21548' => 'bca', 'BcaB05g21549' => 'bca', 'BcaB05g23227' => 'bca', 'BcaB06g26256' => 'bca', 'BcaB06g26257' => 'bca', 'BcaB06g28379' => 'bca', 'BcaC02g11159' => 'bca', 'BcaC03g13258' => 'bca', 'BcaC03g13259' => 'bca', 'BcaC05g24456' => 'bca', 'BcaC05g24457' => 'bca', 'BcaC07g36922' => 'bca', 'BcaC07g36923' => 'bca', 'BcaC07g42050' => 'bca', 'BcaC07g42176' => 'bca', 'BcaC07g42195' => 'bca', 'BcaC07g42196' => 'bca', 'BcaNung06674' => 'bca', 'BolC2t06351H' => 'bol', 'BolC2t06352H' => 'bol', 'BolC3t12993H' => 'bol', 'BolC4t23525H' => 'bol', 'BolC4t27475H' => 'bol', 'BolC5t29025H' => 'bol', 'BolC5t29026H' => 'bol', 'BolC8t46898H' => 'bol', 'BolC8t46899H' => 'bol', 'BolC8t52630H' => 'bol', 'BolC8t52765H' => 'bol', 'BolC9t53824H' => 'bol', 'BraA03t09760Z' => 'bra', 'BraA03t10990Z' => 'bra', 'BraA05t20413Z' => 'bra', 'BraA08t35602Z' => 'bra', 'BraA09t36458Z' => 'bra', 'BraA09t42018Z' => 'bra', 'BraA09t42129Z' => 'bra', 'BraA10t42536Z' => 'bra', 'BraA10t42537Z' => 'bra', 'C01p10690' => 'bna', 'C02p03890' => 'bna', 'C02p03900' => 'bna', 'C03p04620' => 'bna', 'C04p19870' => 'bna', 'C04p59670' => 'bna', 'C05p02460' => 'bna', 'C05p02470' => 'bna', 'C08p00980' => 'bna', 'C08p00990' => 'bna', 'C08p51030' => 'bna', 'C08p52360' => 'bna', 'C09p09120' => 'bna', 'CAN.G19.15' => 'can', 'CAN.G251.10' => 'can', 'CAN.G251.9' => 'can', 'CAN.G398.24' => 'can', 'CAN.G410.32' => 'can', 'CAN.G881.2' => 'can', 'CANSAT01G3025' => 'cansat', 'CANSAT78G1211' => 'cansat', 'CANSAT78G1218' => 'cansat', 'CANSAT78G1521' => 'cansat', 'CANSAT78G1670' => 'cansat', 'CARHR003600' => 'chi', 'CARHR003610' => 'chi', 'CARHR006290' => 'chi', 'CARHR006430' => 'chi', 'CARHR124110' => 'chi', 'CARHR203870' => 'chi', 'CARHR203880' => 'chi', 'CARHR203890' => 'chi', 'CARHR276880' => 'chi', 'Carub.0001s0346' => 'cru', 'Carub.0001s0347' => 'cru', 'Carub.0001s0607' => 'cru', 'Carub.0003s2768' => 'cru', 'Carub.0003s2769' => 'cru', 'Carub.0004s1178' => 'cru', 'Carub.0006s0806' => 'cru', 'Carub.0006s0807' => 'cru', 'Carub.0006s0808' => 'cru', 'Carub.0008s0501' => 'cru', 'Carub.0008s2379' => 'cru', 'Ca_08655_v3' => 'car', 'Ca_08922_v3' => 'car', 'Ca_08923_v3' => 'car', 'Ca_09119_v3' => 'car', 'Ca_09703_v3' => 'car', 'Ca_09705_v3' => 'car', 'Ca_09835_v3' => 'car', 'Ca_26403_v3' => 'car', 'Ca_30719_v3' => 'car', 'CBR_g17958' => 'cbr', 'CBR_g40516' => 'cbr', 'Cc00_g05350' => 'ccan', 'Cc01_g18690' => 'ccan', 'Cc03_g04830' => 'ccan', 'Cc03_g04850' => 'ccan', 'CDE02G4469' => 'cde', 'CDE06G0883' => 'cde', 'CDE06G1295' => 'cde', 'CDE06G1390' => 'cde', 'CDE07G0584' => 'cde', 'CDE07G1084' => 'cde', 'CDE08G1259' => 'cde', 'Cfa002341' => 'cfa', 'Cfa024337' => 'cfa', 'Ciclev10004749m.g' => 'ccl', 'Ciclev10006127m.g' => 'ccl', 'Ciclev10019720m.g' => 'ccl', 'Ciclev10022652m.g' => 'ccl', 'CiPaw.01G190400' => 'cil', 'CiPaw.01G190500' => 'cil', 'CiPaw.02G116400' => 'cil', 'CiPaw.02G116500' => 'cil', 'CiPaw.04G183000' => 'cil', 'CiPaw.04G183300' => 'cil', 'ClCG05G004610' => 'cla', 'ClCG05G004620' => 'cla', 'ClCG06G006730' => 'cla', 'ClCG06G006740' => 'cla', 'ClCG11G003690' => 'cla', 'COL.COLO4_08276' => 'col', 'COL.COLO4_08277' => 'col', 'COL.COLO4_15787' => 'col', 'COL.COLO4_15789' => 'col', 'Cpa.g.c44815' => 'cpa', 'Cpa.g.sc52.144' => 'cpa', 'Cpa.g.sc58.46' => 'cpa', 'Cpa.g.sc58.47' => 'cpa', 'Cre08.g360900' => 'cre', 'CsaV3_2G013030' => 'csa', 'CsaV3_2G013050' => 'csa', 'CsaV3_2G015620' => 'csa', 'CsaV3_3G012590' => 'csa', 'CsaV3_3G012600' => 'csa', 'CSS0001641' => 'camsi', 'CSS0008310' => 'camsi', 'CSS0013011' => 'camsi', 'CSS0017147' => 'camsi', 'CSS0022970' => 'camsi', 'CSS0025655' => 'camsi', 'CSS0028665' => 'camsi', 'CSS0029117' => 'camsi', 'CSS0032024' => 'camsi', 'CSS0039681' => 'camsi', 'CSS0046516' => 'camsi', 'CSS0050307' => 'camsi', 'DCAR_005871' => 'dca', 'DCAR_007342' => 'dca', 'DCAR_024228' => 'dca', 'DCAR_027277' => 'dca', 'DCAR_030718' => 'dca', 'Dinv20287' => 'din', 'Dinv22461' => 'din', 'Dinv22464' => 'din', 'Dinv29912' => 'din', 'Dinv29913' => 'din', 'Dinv34580' => 'din', 'Dinv34582' => 'din', 'Dinv44632' => 'din', 'Duzib052G0266' => 'dzi', 'Duzib133G0907' => 'dzi', 'Duzib133G1034' => 'dzi', 'Duzib138G0207' => 'dzi', 'Duzib138G0491' => 'dzi', 'Duzib151G0812' => 'dzi', 'Duzib151G1166' => 'dzi', 'Duzib168G0192' => 'dzi', 'Duzib211G0077' => 'dzi', 'Duzib212G0429' => 'dzi', 'Duzib212G0472' => 'dzi', 'ECA233G2617' => 'eca', 'ECA236G4188' => 'eca', 'ECA240G0936' => 'eca', 'ECA240G1129' => 'eca', 'ECA247G0623' => 'eca', 'EL10Ac5g10451' => 'bvu', 'EL10Ac5g10453' => 'bvu', 'EL10Ac5g10894' => 'bvu', 'Eucgr.H00192' => 'egr', 'Eucgr.H00193' => 'egr', 'Eucgr.H00194' => 'egr', 'Eucgr.J01562' => 'egr', 'Eucgr.K03301' => 'egr', 'FAN02G0632' => 'fan', 'FAN05G5378' => 'fan', 'FAN09G3247' => 'fan', 'FAN12G0435' => 'fan', 'FAN12G2426' => 'fan', 'FAN14G1707' => 'fan', 'FAN14G4725' => 'fan', 'FAN15G2071' => 'fan', 'FAN17G3065' => 'fan', 'FAN19G1376' => 'fan', 'FAN20G0354' => 'fan', 'FAN20G2429' => 'fan', 'FAN20G2658' => 'fan', 'FAN24G2343' => 'fan', 'FAN27G2362' => 'fan', 'FAN28G1765' => 'fan', 'FvH4_1g16020' => 'fve', 'FvH4_2g04890' => 'fve', 'FvH4_2g22270' => 'fve', 'FvH4_4g02630' => 'fve', 'FvH4_4g02640' => 'fve', 'FvH4_6g02650' => 'fve', 'Glyma.02G140600' => 'gma', 'Glyma.03G159900' => 'gma', 'Glyma.05G234800' => 'gma', 'Glyma.07G269600' => 'gma', 'Glyma.08G042300' => 'gma', 'Glyma.10G033500' => 'gma', 'Glyma.10G185200' => 'gma', 'Glyma.17G004300' => 'gma', 'Glyma.19G161900' => 'gma', 'Glyma.20G205100' => 'gma', 'Glyma.20G205200' => 'gma', 'Gohir.A01G139101' => 'ghi', 'Gohir.A02G035600' => 'ghi', 'Gohir.A02G117901' => 'ghi', 'Gohir.A07G210100' => 'ghi', 'Gohir.A07G210200' => 'ghi', 'Gohir.A08G061100' => 'ghi', 'Gohir.A09G223000' => 'ghi', 'Gohir.A09G223100' => 'ghi', 'Gohir.A10G113900' => 'ghi', 'Gohir.A10G114000' => 'ghi', 'Gohir.D02G042300' => 'ghi', 'Gohir.D07G216100' => 'ghi', 'Gohir.D07G216200' => 'ghi', 'Gohir.D08G070400' => 'ghi', 'Gohir.D09G225000' => 'ghi', 'Gohir.D09G225100' => 'ghi', 'Gohir.D10G152300' => 'ghi', 'Gohir.D10G153200' => 'ghi', 'Gohir.D11G133701' => 'ghi', 'Gorai.004G074100' => 'gra', 'Gorai.005G046800' => 'gra', 'Gorai.006G246500' => 'gra', 'Gorai.006G246600' => 'gra', 'Gorai.007G142900' => 'gra', 'Gorai.011G171000' => 'gra', 'Gorai.011G171100' => 'gra', 'Gorai.013G104300' => 'gra', 'Gorai.013G104400' => 'gra', 'GSVIVG01000754001' => 'vvi', 'GSVIVG01000756001' => 'vvi', 'GSVIVG01010903001' => 'vvi', 'GSVIVG01017623001' => 'vvi', 'GSVIVG01018113001' => 'vvi', 'GSVIVG01018116001' => 'vvi', 'GSVIVG01018118001' => 'vvi', 'HanXRQChr03g0076211' => 'han', 'HanXRQChr03g0092431' => 'han', 'HanXRQChr03g0092441' => 'han', 'HanXRQChr03g0092591' => 'han', 'HanXRQChr03g0092671' => 'han', 'HanXRQChr03g0092681' => 'han', 'HanXRQChr03g0092691' => 'han', 'HanXRQChr03g0092701' => 'han', 'HanXRQChr03g0092721' => 'han', 'HanXRQChr03g0092731' => 'han', 'HanXRQChr04g0113681' => 'han', 'HanXRQChr10g0281371' => 'han', 'HanXRQChr11g0337141' => 'han', 'HanXRQChr13g0424521' => 'han', 'HanXRQChr13g0424531' => 'han', 'HanXRQChr13g0424541' => 'han', 'HanXRQChr16g0498221' => 'han', 'Haze_04377' => 'cav', 'Haze_11298' => 'cav', 'Haze_24547' => 'cav', 'Haze_24550' => 'cav', 'Haze_26587' => 'cav', 'Hma1.2p1_0650F.1_g195410' => 'hma', 'Hma1.2p1_0893F.1_g233470' => 'hma', 'HPP92_006508' => 'vpl', 'HPP92_024780' => 'vpl', 'Hund02688' => 'sun', 'Hund09380' => 'sun', 'Hund09381' => 'sun', 'Hund09832' => 'sun', 'Hund09833' => 'sun', 'Hund11351' => 'sun', 'Hund11513' => 'sun', 'Lalb_Chr06g0162591' => 'lal', 'Lalb_Chr06g0162601' => 'lal', 'Lalb_Chr06g0169321' => 'lal', 'Lalb_Chr09g0330951' => 'lal', 'Lalb_Chr16g0387631' => 'lal', 'Lalb_Chr21g0306241' => 'lal', 'Lalb_Chr25g0290051' => 'lal', 'Lalb_Chr25g0290061' => 'lal', 'Lalb_Chr25g0290071' => 'lal', 'Lj1g0003876' => 'lja', 'Lj1P1207T36' => 'lonja', 'Lj2C1156G12' => 'lonja', 'Lj3A793G39' => 'lonja', 'Lj3C580G2' => 'lonja', 'Lj3C780G2' => 'lonja', 'Lj3C780T4' => 'lonja', 'Lj3C793G9' => 'lonja', 'Lj4g0012960' => 'lja', 'Lj5g0021252' => 'lja', 'Lj5g0021484' => 'lja', 'Lj5g0024528' => 'lja', 'Lj6A399T12' => 'lonja', 'Lj6A656G65' => 'lonja', 'Lsat_1_v5_gn_3_125500' => 'lsa', 'Lsat_1_v5_gn_3_125540' => 'lsa', 'Lsat_1_v5_gn_5_72701' => 'lsa', 'Lsat_1_v5_gn_8_91560' => 'lsa', 'Lsat_1_v5_gn_9_9640' => 'lsa', 'Manes.01G200600' => 'mes', 'Manes.01G200700' => 'mes', 'Manes.03G168900' => 'mes', 'Manes.03G169000' => 'mes', 'Manes.05G085801' => 'mes', 'Manes.05G086200' => 'mes', 'Manes.15G036700' => 'mes', 'Manes.15G036900' => 'mes', 'Mapoly0004s0172' => 'mpo', 'Mapoly0023s0001' => 'mpo', 'Mapoly0142s0012' => 'mpo', 'MBI01_g32854_MAGBIO' => 'mbi', 'MBI11_g24427_MAGBIO' => 'mbi', 'MBI11_g47319_MAGBIO' => 'mbi', 'MCO01G433' => 'mco', 'MD00G1187800' => 'mdo', 'MD04G1226500' => 'mdo', 'MD05G1203900' => 'mdo', 'MD10G1191100' => 'mdo', 'MD12G1243500' => 'mdo', 'MD13G1207000' => 'mdo', 'MD13G1207100' => 'mdo', 'MD16G1208600' => 'mdo', 'Medtr1g050352' => 'mtr', 'Medtr1g070385' => 'mtr', 'Medtr1g070450' => 'mtr', 'Medtr1g075200' => 'mtr', 'Medtr1g075250' => 'mtr', 'Medtr1g075260' => 'mtr', 'Medtr1g475250' => 'mtr', 'Medtr4g075450' => 'mtr', 'Medtr7g096300' => 'mtr', 'Medtr8g105110' => 'mtr', 'MELO3C006470.2' => 'cme', 'MELO3C006471.2' => 'cme', 'MELO3C020772.2' => 'cme', 'MELO3C026780.2' => 'cme', 'MELO3C026781.2' => 'cme', 'Migut.D00390' => 'egut', 'Migut.G00435' => 'egut', 'Migut.G00436' => 'egut', 'Migut.G00718' => 'egut', 'MSTRG.21891' => 'ama', 'MSTRG.26910' => 'ama', 'MSTRG.4099' => 'ama', 'MSTRG.9925' => 'ama', 'Nitab4.5_0000165g0010' => 'nta', 'Nitab4.5_0000209g0180' => 'nta', 'Nitab4.5_0000244g0440' => 'nta', 'Nitab4.5_0000525g0220' => 'nta', 'Nitab4.5_0001597g0020' => 'nta', 'Nitab4.5_0001878g0040' => 'nta', 'Nitab4.5_0001878g0060' => 'nta', 'Nitab4.5_0002838g0100' => 'nta', 'Nitab4.5_0002838g0120' => 'nta', 'Nitab4.5_0004798g0030' => 'nta', 'Nitab4.5_0005420g0010' => 'nta', 'Nitab4.5_0005507g0010' => 'nta', 'Nitab4.5_0005574g0020' => 'nta', 'Nitab4.5_0005838g0010' => 'nta', 'Nitab4.5_0010580g0020' => 'nta', 'Nn1g02599' => 'nnu', 'Nn1g02608' => 'nnu', 'Nn3g17742' => 'nnu', 'Nn3g19534' => 'nnu', 'Nn3g19535' => 'nnu', 'Oeu008790.1' => 'oeu', 'Oeu008792.1' => 'oeu', 'Oeu032590.1' => 'oeu', 'Oeu035349.1' => 'oeu', 'Oeu049791.1' => 'oeu', 'Os01g0774500' => 'osa', 'Os03g0628800' => 'osa', 'Os03g0798600' => 'osa', 'Os05g0508800' => 'osa', 'Peaxi162Scf00036g02018' => 'pax', 'Peaxi162Scf00578g00032' => 'pax', 'Peaxi162Scf00578g00317' => 'pax', 'Peaxi162Scf00785g00114' => 'pax', 'Peaxi162Scf00813g00119' => 'pax', 'Peaxi162Scf00906g00227' => 'pax', 'PGR004G0875' => 'pgr', 'PGR004G2424' => 'pgr', 'PGR031G1239' => 'pgr', 'PGR031G2474' => 'pgr', 'PGR044G0423' => 'pgr', 'PGSC0003DMG400001128' => 'stu', 'PGSC0003DMG400007336' => 'stu', 'PGSC0003DMG400016318' => 'stu', 'PGSC0003DMG400016319' => 'stu', 'PGSC0003DMG400018074' => 'stu', 'Phvul.001G157700' => 'pvu', 'Phvul.002G148550' => 'pvu', 'Phvul.002G320200' => 'pvu', 'Phvul.003G089200' => 'pvu', 'Phvul.007G126000' => 'pvu', 'Phvul.007G126100' => 'pvu', 'Phvul.007G178000' => 'pvu', 'Phvul.007G178200' => 'pvu', 'Potri.002G043000' => 'ptr', 'Potri.002G043200' => 'ptr', 'Potri.003G123750' => 'ptr', 'Potri.005G055401' => 'ptr', 'Potri.005G219700' => 'ptr', 'Potri.005G220000' => 'ptr', 'Potri.008G161901' => 'ptr', 'Potri.008G162000' => 'ptr', 'Potri.008G162400' => 'ptr', 'Potri.010G076900' => 'ptr', 'Pp3c12_9180' => 'ppa', 'Pp3c13_19770' => 'ppa', 'Pp3c14_22950' => 'ppa', 'Pp3c16_12160' => 'ppa', 'Pp3c27_7820' => 'ppa', 'Pp3c2_3490' => 'ppa', 'Pp3c3_23700' => 'ppa', 'Pp3c3_36520' => 'ppa', 'Pp3c4_15250' => 'ppa', 'PRCOL_00007002' => 'pco', 'Prupe.1G030600' => 'ppe', 'Prupe.1G030700' => 'ppe', 'Prupe.6G345200' => 'ppe', 'Prupe.8G230300' => 'ppe', 'Prupe.8G230500' => 'ppe', 'Psat3g059600' => 'psa', 'Psat5g200920' => 'psa', 'Psat6g056440' => 'psa', 'Psat6g057360' => 'psa', 'Psat6g134120' => 'psa', 'Psat6g134160' => 'psa', 'Psat7g008640' => 'psa', 'Psat7g185240' => 'psa', 'PSO017G1330' => 'pso', 'PSO063G6097' => 'pso', 'PSO170G0835' => 'pso', 'PSO170G2499' => 'pso', 'PSO210G5058' => 'pso', 'PSO210G6154' => 'pso', 'PSO585G0031' => 'pso', 'PSO832G0264' => 'pso', 'PSO832G4288' => 'pso', 'QL03p027355' => 'qlo', 'QL03p027430' => 'qlo', 'QL04p081380' => 'qlo', 'QL06p015642' => 'qlo', 'QL06p015650' => 'qlo', 'QL06p015686' => 'qlo', 'QL12p042927' => 'qlo', 'QL93p1863_0035' => 'qlo', 'RcHm_v2.0_Chr3g0450581' => 'rch', 'RcHm_v2.0_Chr4g0390371' => 'rch', 'RcHm_v2.0_Chr4g0390381' => 'rch', 'RcHm_v2.0_Chr4g0390491' => 'rch', 'RcHm_v2.0_Chr4g0390501' => 'rch', 'RcHm_v2.0_Chr6g0289231' => 'rch', 'Rhsim04G0190400' => 'rsi', 'Rhsim04G0190500' => 'rsi', 'Rhsim04G0190600' => 'rsi', 'Rhsim13G0031400' => 'rsi', 'Rhsim13G0165600' => 'rsi', 'RhsimUnG0114600' => 'rsi', 'RhsimUnG0114700' => 'rsi', 'Sabra02G0034800' => 'sbr', 'Sabra02G0035100' => 'sbr', 'Sabra05G0168600' => 'sbr', 'Sabra05G0168800' => 'sbr', 'Sabra08G0123700' => 'sbr', 'Sabra10G0031900' => 'sbr', 'Sabra13G0039000' => 'sbr', 'SalBow2G0782' => 'sbo', 'SalBow2G1403' => 'sbo', 'SalBow4G0074' => 'sbo', 'SalBow4G2635' => 'sbo', 'SalBow5G3010' => 'sbo', 'Sc05g0000870' => 'sci', 'Sc05g0000890' => 'sci', 'Sc13g0005000' => 'sci', 'Sc13g0005030' => 'sci', 'Sc19g0003790' => 'sci', 'Sc19g0003800' => 'sci', 'Sed0003467' => 'sed', 'Sed0009355' => 'sed', 'Sed0009894' => 'sed', 'Sed0011972' => 'sed', 'Sed0021483' => 'sed', 'Sed0021750' => 'sed', 'Sed0026279' => 'sed', 'SEGI_05312' => 'sgi', 'SEGI_10112' => 'sgi', 'SEGI_15835' => 'sgi', 'SEGI_30386' => 'sgi', 'SEGI_34122' => 'sgi', 'SEGI_35063' => 'sgi', 'SGA_v2.0_scaffold101G29794' => 'sas', 'SGA_v2.0_scaffold1G00573' => 'sas', 'SGA_v2.0_scaffold79G25637' => 'sas', 'SGA_v2.0_scaffold88G27283' => 'sas', 'SGA_v2.0_scaffold88G27285' => 'sas', 'SGA_v2.0_scaffold88G27331' => 'sas', 'SHI09937' => 'shi', 'SMO119G0302' => 'smo', 'SMO137G0231' => 'smo', 'SMO367G1151' => 'smo', 'Solyc02g082000.3' => 'sly', 'Solyc06g031670.3' => 'sly', 'Solyc06g053810.3' => 'sly', 'Solyc07g025457.1' => 'sly', 'Solyc08g059740.1' => 'sly', 'Solyc08g059750.3' => 'sly', 'Solyc09g083370.3' => 'sly', 'Solyc12g038950.3' => 'sly', 'Sopen02g026630' => 'spe', 'Sopen06g018930' => 'spe', 'Sopen06g018940' => 'spe', 'Sopen08g009460' => 'spe', 'Sopen09g032290' => 'spe', 'Sp1g03080' => 'spa', 'Sp1g03090' => 'spa', 'Sp1g05480' => 'spa', 'Sp2g07860' => 'spa', 'Sp2g08430' => 'spa', 'Sp2g08440' => 'spa', 'Sp2g26200' => 'spa', 'Sp4g13170' => 'spa', 'Sp6g33840' => 'spa', 'SpUn1204_0010' => 'spa', 'TAR365G0908' => 'tar', 'TAR381G1270' => 'tar', 'TAR381G1651' => 'tar', 'TAR625G1131' => 'tar', 'TAR633G0962' => 'tar', 'TAR633G1729' => 'tar', 'TAR633G1864' => 'tar', 'TAR636G0221' => 'tar', 'TAR636G0314' => 'tar', 'TAR636G3202' => 'tar', 'THA.LOC104800805' => 'tha', 'THA.LOC104801096' => 'tha', 'THA.LOC104801555' => 'tha', 'THA.LOC104808491' => 'tha', 'THA.LOC104808595' => 'tha', 'THA.LOC104815985' => 'tha', 'THA.LOC104822250' => 'tha', 'THA.LOC104826071' => 'tha', 'Thecc.01G265200' => 'tca', 'Thecc.01G265300' => 'tca', 'Thecc.01G265700' => 'tca', 'Thecc.03G109100' => 'tca', 'Thecc.04G245900' => 'tca', 'Thecc.04G246000' => 'tca', 'Thhalv10003334m.g' => 'esa', 'Thhalv10005508m.g' => 'esa', 'Thhalv10005643m.g' => 'esa', 'Thhalv10007316m.g' => 'esa', 'Thhalv10009006m.g' => 'esa', 'Thhalv10009309m.g' => 'esa', 'Thhalv10014917m.g' => 'esa', 'Thhalv10014919m.g' => 'esa', 'Thhalv10015393m.g' => 'esa', 'Thhalv10016515m.g' => 'esa', 'Thhalv10029242m.g' => 'esa', 'TPR.G16654' => 'tpr', 'TPR.G20589' => 'tpr', 'TPR.G23029' => 'tpr', 'TPR.G27731' => 'tpr', 'TPR.G28889' => 'tpr', 'TPR.G28899' => 'tpr', 'TPR.G30846' => 'tpr', 'TPR.G5452' => 'tpr', 'TPR.G5713' => 'tpr', 'TPR.G9046' => 'tpr', 'TPR.G9061' => 'tpr', 'TWI09G1075' => 'twi', 'TWI12G0806' => 'twi', 'TWI18G0108' => 'twi', 'TWI53G1361' => 'twi', 'TWI73G0185' => 'twi', 'TWI73G0427' => 'twi', 'unitig_37.g12001' => 'ugi', 'unitig_747.g21660' => 'ugi', 'unitig_748.g7232' => 'ugi', 'unitig_748.g7315' => 'ugi', 'unitig_85.g27262' => 'ugi', 'unitig_92.g28220' => 'ugi', 'vmacro02632' => 'vma', 'vmacro08410' => 'vma', 'vmacro08411' => 'vma', 'vmacro15407' => 'vma', 'VMungo0251G3619' => 'vmu', 'VMungo0720G1204' => 'vmu', 'VMungo0720G1918' => 'vmu', 'VMungo0720G2387' => 'vmu', 'VMungo0720G2961' => 'vmu', 'VMungo1215G2154' => 'vmu', 'VMungo1383G2411' => 'vmu', 'Zm00001eb051130' => 'zma', 'Zm00001eb116830' => 'zma', 'Zm00001eb116850' => 'zma', 'Zm00001eb151740' => 'zma', 'Zm00001eb292360' => 'zma', 'Zm00001eb301640' => 'zma' ), 'gf_id' => 'HOM05D000856', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000856' ), 'data_identifier' => 'HOM05D000856', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000856', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p00010' => 'bna', 'A03p04160' => 'bna', 'A03p17160' => 'bna', 'A04p23370' => 'bna', 'A05p14860' => 'bna', 'A08p37020' => 'bna', 'A09p08050' => 'bna', 'A09p66800' => 'bna', 'A09p67940' => 'bna', 'A10p02680' => 'bna', 'A10p05320' => 'bna', 'Aa31LG1G20560' => 'aar', 'Aa31LG1G20610' => 'aar', 'Aa31LG1G7810' => 'aar', 'Aa31LG5G3590' => 'aar', 'Aa31LG5G6140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3819' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4683' => 'aag', 'Actinidia04480' => 'ach', 'Actinidia05466' => 'ach', 'Actinidia08445' => 'ach', 'Actinidia21170' => 'ach', 'Actinidia24812' => 'ach', 'Actinidia24951' => 'ach', 'Actinidia40088' => 'ach', 'Ah.02g111660' => 'amhyb', 'Ah.11g048900' => 'amhyb', 'Ah.11g049910' => 'amhyb', 'AL1G13870' => 'aly', 'AL1G13880' => 'aly', 'AL1G16760' => 'aly', 'AL390U10020' => 'aly', 'AL4G25520' => 'aly', 'AL6G19890' => 'aly', 'AL6G19900' => 'aly', 'AL6G19910' => 'aly', 'AL8G40100' => 'aly', 'Aqoxy2G03562' => 'aox', 'Aqoxy5G00316' => 'aox', 'Aqoxy5G00926' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1628KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1H403S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2FU6SJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.882I6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8YRY2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YN1SN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AF70II' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZA8L1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F916KL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHRD8H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KTZ8QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S22EMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8M29T' => 'arhy', 'AT1G04270' => 'ath', 'AT1G04280' => 'ath', 'AT1G06750' => 'ath', 'AT1G33850' => 'ath', 'AT2G30630' => 'ath', 'AT5G09490' => 'ath', 'AT5G09500' => 'ath', 'AT5G09510' => 'ath', 'AT5G43640' => 'ath', 'AT5G63070' => 'ath', 'ATR0605G315' => 'atr', 'Atru.chr11.175' => 'acertr', 'Atru.chr11.653' => 'acertr', 'Atru.chr3.1616' => 'acertr', 'Atru.chr4.2230' => 'acertr', 'Atru.chr4.2232' => 'acertr', 'Atru.chr5.1598' => 'acertr', 'Atru.chr5.1600' => 'acertr', 'Atru.chr5.2188' => 'acertr', 'AUR62008326' => 'cqu', 'AUR62011922' => 'cqu', 'AUR62011924' => 'cqu', 'AUR62021771' => 'cqu', 'AUR62032237' => 'cqu', 'AUR62032240' => 'cqu', 'BcaB01g05572' => 'bca', 'BcaB02g10337' => 'bca', 'BcaB04g19944' => 'bca', 'BcaB05g21548' => 'bca', 'BcaB05g21549' => 'bca', 'BcaB05g23227' => 'bca', 'BcaB06g26256' => 'bca', 'BcaB06g26257' => 'bca', 'BcaB06g28379' => 'bca', 'BcaC02g11159' => 'bca', 'BcaC03g13258' => 'bca', 'BcaC03g13259' => 'bca', 'BcaC05g24456' => 'bca', 'BcaC05g24457' => 'bca', 'BcaC07g36922' => 'bca', 'BcaC07g36923' => 'bca', 'BcaC07g42050' => 'bca', 'BcaC07g42176' => 'bca', 'BcaC07g42195' => 'bca', 'BcaC07g42196' => 'bca', 'BcaNung06674' => 'bca', 'BolC2t06351H' => 'bol', 'BolC2t06352H' => 'bol', 'BolC3t12993H' => 'bol', 'BolC4t23525H' => 'bol', 'BolC4t27475H' => 'bol', 'BolC5t29025H' => 'bol', 'BolC5t29026H' => 'bol', 'BolC8t46898H' => 'bol', 'BolC8t46899H' => 'bol', 'BolC8t52630H' => 'bol', 'BolC8t52765H' => 'bol', 'BolC9t53824H' => 'bol', 'BraA03t09760Z' => 'bra', 'BraA03t10990Z' => 'bra', 'BraA05t20413Z' => 'bra', 'BraA08t35602Z' => 'bra', 'BraA09t36458Z' => 'bra', 'BraA09t42018Z' => 'bra', 'BraA09t42129Z' => 'bra', 'BraA10t42536Z' => 'bra', 'BraA10t42537Z' => 'bra', 'C01p10690' => 'bna', 'C02p03890' => 'bna', 'C02p03900' => 'bna', 'C03p04620' => 'bna', 'C04p19870' => 'bna', 'C04p59670' => 'bna', 'C05p02460' => 'bna', 'C05p02470' => 'bna', 'C08p00980' => 'bna', 'C08p00990' => 'bna', 'C08p51030' => 'bna', 'C08p52360' => 'bna', 'C09p09120' => 'bna', 'CAN.G19.15' => 'can', 'CAN.G251.10' => 'can', 'CAN.G251.9' => 'can', 'CAN.G398.24' => 'can', 'CAN.G410.32' => 'can', 'CAN.G881.2' => 'can', 'CANSAT01G3025' => 'cansat', 'CANSAT78G1211' => 'cansat', 'CANSAT78G1218' => 'cansat', 'CANSAT78G1521' => 'cansat', 'CANSAT78G1670' => 'cansat', 'CARHR003600' => 'chi', 'CARHR003610' => 'chi', 'CARHR006290' => 'chi', 'CARHR006430' => 'chi', 'CARHR124110' => 'chi', 'CARHR203870' => 'chi', 'CARHR203880' => 'chi', 'CARHR203890' => 'chi', 'CARHR276880' => 'chi', 'Carub.0001s0346' => 'cru', 'Carub.0001s0347' => 'cru', 'Carub.0001s0607' => 'cru', 'Carub.0003s2768' => 'cru', 'Carub.0003s2769' => 'cru', 'Carub.0004s1178' => 'cru', 'Carub.0006s0806' => 'cru', 'Carub.0006s0807' => 'cru', 'Carub.0006s0808' => 'cru', 'Carub.0008s0501' => 'cru', 'Carub.0008s2379' => 'cru', 'Ca_08655_v3' => 'car', 'Ca_08922_v3' => 'car', 'Ca_08923_v3' => 'car', 'Ca_09119_v3' => 'car', 'Ca_09703_v3' => 'car', 'Ca_09705_v3' => 'car', 'Ca_09835_v3' => 'car', 'Ca_26403_v3' => 'car', 'Ca_30719_v3' => 'car', 'CBR_g17958' => 'cbr', 'CBR_g40516' => 'cbr', 'Cc00_g05350' => 'ccan', 'Cc01_g18690' => 'ccan', 'Cc03_g04830' => 'ccan', 'Cc03_g04850' => 'ccan', 'CDE02G4469' => 'cde', 'CDE06G0883' => 'cde', 'CDE06G1295' => 'cde', 'CDE06G1390' => 'cde', 'CDE07G0584' => 'cde', 'CDE07G1084' => 'cde', 'CDE08G1259' => 'cde', 'Cfa002341' => 'cfa', 'Cfa024337' => 'cfa', 'Ciclev10004749m.g' => 'ccl', 'Ciclev10006127m.g' => 'ccl', 'Ciclev10019720m.g' => 'ccl', 'Ciclev10022652m.g' => 'ccl', 'CiPaw.01G190400' => 'cil', 'CiPaw.01G190500' => 'cil', 'CiPaw.02G116400' => 'cil', 'CiPaw.02G116500' => 'cil', 'CiPaw.04G183000' => 'cil', 'CiPaw.04G183300' => 'cil', 'ClCG05G004610' => 'cla', 'ClCG05G004620' => 'cla', 'ClCG06G006730' => 'cla', 'ClCG06G006740' => 'cla', 'ClCG11G003690' => 'cla', 'COL.COLO4_08276' => 'col', 'COL.COLO4_08277' => 'col', 'COL.COLO4_15787' => 'col', 'COL.COLO4_15789' => 'col', 'Cpa.g.c44815' => 'cpa', 'Cpa.g.sc52.144' => 'cpa', 'Cpa.g.sc58.46' => 'cpa', 'Cpa.g.sc58.47' => 'cpa', 'Cre08.g360900' => 'cre', 'CsaV3_2G013030' => 'csa', 'CsaV3_2G013050' => 'csa', 'CsaV3_2G015620' => 'csa', 'CsaV3_3G012590' => 'csa', 'CsaV3_3G012600' => 'csa', 'CSS0001641' => 'camsi', 'CSS0008310' => 'camsi', 'CSS0013011' => 'camsi', 'CSS0017147' => 'camsi', 'CSS0022970' => 'camsi', 'CSS0025655' => 'camsi', 'CSS0028665' => 'camsi', 'CSS0029117' => 'camsi', 'CSS0032024' => 'camsi', 'CSS0039681' => 'camsi', 'CSS0046516' => 'camsi', 'CSS0050307' => 'camsi', 'DCAR_005871' => 'dca', 'DCAR_007342' => 'dca', 'DCAR_024228' => 'dca', 'DCAR_027277' => 'dca', 'DCAR_030718' => 'dca', 'Dinv20287' => 'din', 'Dinv22461' => 'din', 'Dinv22464' => 'din', 'Dinv29912' => 'din', 'Dinv29913' => 'din', 'Dinv34580' => 'din', 'Dinv34582' => 'din', 'Dinv44632' => 'din', 'Duzib052G0266' => 'dzi', 'Duzib133G0907' => 'dzi', 'Duzib133G1034' => 'dzi', 'Duzib138G0207' => 'dzi', 'Duzib138G0491' => 'dzi', 'Duzib151G0812' => 'dzi', 'Duzib151G1166' => 'dzi', 'Duzib168G0192' => 'dzi', 'Duzib211G0077' => 'dzi', 'Duzib212G0429' => 'dzi', 'Duzib212G0472' => 'dzi', 'ECA233G2617' => 'eca', 'ECA236G4188' => 'eca', 'ECA240G0936' => 'eca', 'ECA240G1129' => 'eca', 'ECA247G0623' => 'eca', 'EL10Ac5g10451' => 'bvu', 'EL10Ac5g10453' => 'bvu', 'EL10Ac5g10894' => 'bvu', 'Eucgr.H00192' => 'egr', 'Eucgr.H00193' => 'egr', 'Eucgr.H00194' => 'egr', 'Eucgr.J01562' => 'egr', 'Eucgr.K03301' => 'egr', 'FAN02G0632' => 'fan', 'FAN05G5378' => 'fan', 'FAN09G3247' => 'fan', 'FAN12G0435' => 'fan', 'FAN12G2426' => 'fan', 'FAN14G1707' => 'fan', 'FAN14G4725' => 'fan', 'FAN15G2071' => 'fan', 'FAN17G3065' => 'fan', 'FAN19G1376' => 'fan', 'FAN20G0354' => 'fan', 'FAN20G2429' => 'fan', 'FAN20G2658' => 'fan', 'FAN24G2343' => 'fan', 'FAN27G2362' => 'fan', 'FAN28G1765' => 'fan', 'FvH4_1g16020' => 'fve', 'FvH4_2g04890' => 'fve', 'FvH4_2g22270' => 'fve', 'FvH4_4g02630' => 'fve', 'FvH4_4g02640' => 'fve', 'FvH4_6g02650' => 'fve', 'Glyma.02G140600' => 'gma', 'Glyma.03G159900' => 'gma', 'Glyma.05G234800' => 'gma', 'Glyma.07G269600' => 'gma', 'Glyma.08G042300' => 'gma', 'Glyma.10G033500' => 'gma', 'Glyma.10G185200' => 'gma', 'Glyma.17G004300' => 'gma', 'Glyma.19G161900' => 'gma', 'Glyma.20G205100' => 'gma', 'Glyma.20G205200' => 'gma', 'Gohir.A01G139101' => 'ghi', 'Gohir.A02G035600' => 'ghi', 'Gohir.A02G117901' => 'ghi', 'Gohir.A07G210100' => 'ghi', 'Gohir.A07G210200' => 'ghi', 'Gohir.A08G061100' => 'ghi', 'Gohir.A09G223000' => 'ghi', 'Gohir.A09G223100' => 'ghi', 'Gohir.A10G113900' => 'ghi', 'Gohir.A10G114000' => 'ghi', 'Gohir.D02G042300' => 'ghi', 'Gohir.D07G216100' => 'ghi', 'Gohir.D07G216200' => 'ghi', 'Gohir.D08G070400' => 'ghi', 'Gohir.D09G225000' => 'ghi', 'Gohir.D09G225100' => 'ghi', 'Gohir.D10G152300' => 'ghi', 'Gohir.D10G153200' => 'ghi', 'Gohir.D11G133701' => 'ghi', 'Gorai.004G074100' => 'gra', 'Gorai.005G046800' => 'gra', 'Gorai.006G246500' => 'gra', 'Gorai.006G246600' => 'gra', 'Gorai.007G142900' => 'gra', 'Gorai.011G171000' => 'gra', 'Gorai.011G171100' => 'gra', 'Gorai.013G104300' => 'gra', 'Gorai.013G104400' => 'gra', 'GSVIVG01000754001' => 'vvi', 'GSVIVG01000756001' => 'vvi', 'GSVIVG01010903001' => 'vvi', 'GSVIVG01017623001' => 'vvi', 'GSVIVG01018113001' => 'vvi', 'GSVIVG01018116001' => 'vvi', 'GSVIVG01018118001' => 'vvi', 'HanXRQChr03g0076211' => 'han', 'HanXRQChr03g0092431' => 'han', 'HanXRQChr03g0092441' => 'han', 'HanXRQChr03g0092591' => 'han', 'HanXRQChr03g0092671' => 'han', 'HanXRQChr03g0092681' => 'han', 'HanXRQChr03g0092691' => 'han', 'HanXRQChr03g0092701' => 'han', 'HanXRQChr03g0092721' => 'han', 'HanXRQChr03g0092731' => 'han', 'HanXRQChr04g0113681' => 'han', 'HanXRQChr10g0281371' => 'han', 'HanXRQChr11g0337141' => 'han', 'HanXRQChr13g0424521' => 'han', 'HanXRQChr13g0424531' => 'han', 'HanXRQChr13g0424541' => 'han', 'HanXRQChr16g0498221' => 'han', 'Haze_04377' => 'cav', 'Haze_11298' => 'cav', 'Haze_24547' => 'cav', 'Haze_24550' => 'cav', 'Haze_26587' => 'cav', 'Hma1.2p1_0650F.1_g195410' => 'hma', 'Hma1.2p1_0893F.1_g233470' => 'hma', 'HPP92_006508' => 'vpl', 'HPP92_024780' => 'vpl', 'Hund02688' => 'sun', 'Hund09380' => 'sun', 'Hund09381' => 'sun', 'Hund09832' => 'sun', 'Hund09833' => 'sun', 'Hund11351' => 'sun', 'Hund11513' => 'sun', 'Lalb_Chr06g0162591' => 'lal', 'Lalb_Chr06g0162601' => 'lal', 'Lalb_Chr06g0169321' => 'lal', 'Lalb_Chr09g0330951' => 'lal', 'Lalb_Chr16g0387631' => 'lal', 'Lalb_Chr21g0306241' => 'lal', 'Lalb_Chr25g0290051' => 'lal', 'Lalb_Chr25g0290061' => 'lal', 'Lalb_Chr25g0290071' => 'lal', 'Lj1g0003876' => 'lja', 'Lj1P1207T36' => 'lonja', 'Lj2C1156G12' => 'lonja', 'Lj3A793G39' => 'lonja', 'Lj3C580G2' => 'lonja', 'Lj3C780G2' => 'lonja', 'Lj3C780T4' => 'lonja', 'Lj3C793G9' => 'lonja', 'Lj4g0012960' => 'lja', 'Lj5g0021252' => 'lja', 'Lj5g0021484' => 'lja', 'Lj5g0024528' => 'lja', 'Lj6A399T12' => 'lonja', 'Lj6A656G65' => 'lonja', 'Lsat_1_v5_gn_3_125500' => 'lsa', 'Lsat_1_v5_gn_3_125540' => 'lsa', 'Lsat_1_v5_gn_5_72701' => 'lsa', 'Lsat_1_v5_gn_8_91560' => 'lsa', 'Lsat_1_v5_gn_9_9640' => 'lsa', 'Manes.01G200600' => 'mes', 'Manes.01G200700' => 'mes', 'Manes.03G168900' => 'mes', 'Manes.03G169000' => 'mes', 'Manes.05G085801' => 'mes', 'Manes.05G086200' => 'mes', 'Manes.15G036700' => 'mes', 'Manes.15G036900' => 'mes', 'Mapoly0004s0172' => 'mpo', 'Mapoly0023s0001' => 'mpo', 'Mapoly0142s0012' => 'mpo', 'MBI01_g32854_MAGBIO' => 'mbi', 'MBI11_g24427_MAGBIO' => 'mbi', 'MBI11_g47319_MAGBIO' => 'mbi', 'MCO01G433' => 'mco', 'MD00G1187800' => 'mdo', 'MD04G1226500' => 'mdo', 'MD05G1203900' => 'mdo', 'MD10G1191100' => 'mdo', 'MD12G1243500' => 'mdo', 'MD13G1207000' => 'mdo', 'MD13G1207100' => 'mdo', 'MD16G1208600' => 'mdo', 'Medtr1g050352' => 'mtr', 'Medtr1g070385' => 'mtr', 'Medtr1g070450' => 'mtr', 'Medtr1g075200' => 'mtr', 'Medtr1g075250' => 'mtr', 'Medtr1g075260' => 'mtr', 'Medtr1g475250' => 'mtr', 'Medtr4g075450' => 'mtr', 'Medtr7g096300' => 'mtr', 'Medtr8g105110' => 'mtr', 'MELO3C006470.2' => 'cme', 'MELO3C006471.2' => 'cme', 'MELO3C020772.2' => 'cme', 'MELO3C026780.2' => 'cme', 'MELO3C026781.2' => 'cme', 'Migut.D00390' => 'egut', 'Migut.G00435' => 'egut', 'Migut.G00436' => 'egut', 'Migut.G00718' => 'egut', 'MSTRG.21891' => 'ama', 'MSTRG.26910' => 'ama', 'MSTRG.4099' => 'ama', 'MSTRG.9925' => 'ama', 'Nitab4.5_0000165g0010' => 'nta', 'Nitab4.5_0000209g0180' => 'nta', 'Nitab4.5_0000244g0440' => 'nta', 'Nitab4.5_0000525g0220' => 'nta', 'Nitab4.5_0001597g0020' => 'nta', 'Nitab4.5_0001878g0040' => 'nta', 'Nitab4.5_0001878g0060' => 'nta', 'Nitab4.5_0002838g0100' => 'nta', 'Nitab4.5_0002838g0120' => 'nta', 'Nitab4.5_0004798g0030' => 'nta', 'Nitab4.5_0005420g0010' => 'nta', 'Nitab4.5_0005507g0010' => 'nta', 'Nitab4.5_0005574g0020' => 'nta', 'Nitab4.5_0005838g0010' => 'nta', 'Nitab4.5_0010580g0020' => 'nta', 'Nn1g02599' => 'nnu', 'Nn1g02608' => 'nnu', 'Nn3g17742' => 'nnu', 'Nn3g19534' => 'nnu', 'Nn3g19535' => 'nnu', 'Oeu008790.1' => 'oeu', 'Oeu008792.1' => 'oeu', 'Oeu032590.1' => 'oeu', 'Oeu035349.1' => 'oeu', 'Oeu049791.1' => 'oeu', 'Os01g0774500' => 'osa', 'Os03g0628800' => 'osa', 'Os03g0798600' => 'osa', 'Os05g0508800' => 'osa', 'Peaxi162Scf00036g02018' => 'pax', 'Peaxi162Scf00578g00032' => 'pax', 'Peaxi162Scf00578g00317' => 'pax', 'Peaxi162Scf00785g00114' => 'pax', 'Peaxi162Scf00813g00119' => 'pax', 'Peaxi162Scf00906g00227' => 'pax', 'PGR004G0875' => 'pgr', 'PGR004G2424' => 'pgr', 'PGR031G1239' => 'pgr', 'PGR031G2474' => 'pgr', 'PGR044G0423' => 'pgr', 'PGSC0003DMG400001128' => 'stu', 'PGSC0003DMG400007336' => 'stu', 'PGSC0003DMG400016318' => 'stu', 'PGSC0003DMG400016319' => 'stu', 'PGSC0003DMG400018074' => 'stu', 'Phvul.001G157700' => 'pvu', 'Phvul.002G148550' => 'pvu', 'Phvul.002G320200' => 'pvu', 'Phvul.003G089200' => 'pvu', 'Phvul.007G126000' => 'pvu', 'Phvul.007G126100' => 'pvu', 'Phvul.007G178000' => 'pvu', 'Phvul.007G178200' => 'pvu', 'Potri.002G043000' => 'ptr', 'Potri.002G043200' => 'ptr', 'Potri.003G123750' => 'ptr', 'Potri.005G055401' => 'ptr', 'Potri.005G219700' => 'ptr', 'Potri.005G220000' => 'ptr', 'Potri.008G161901' => 'ptr', 'Potri.008G162000' => 'ptr', 'Potri.008G162400' => 'ptr', 'Potri.010G076900' => 'ptr', 'Pp3c12_9180' => 'ppa', 'Pp3c13_19770' => 'ppa', 'Pp3c14_22950' => 'ppa', 'Pp3c16_12160' => 'ppa', 'Pp3c27_7820' => 'ppa', 'Pp3c2_3490' => 'ppa', 'Pp3c3_23700' => 'ppa', 'Pp3c3_36520' => 'ppa', 'Pp3c4_15250' => 'ppa', 'PRCOL_00007002' => 'pco', 'Prupe.1G030600' => 'ppe', 'Prupe.1G030700' => 'ppe', 'Prupe.6G345200' => 'ppe', 'Prupe.8G230300' => 'ppe', 'Prupe.8G230500' => 'ppe', 'Psat3g059600' => 'psa', 'Psat5g200920' => 'psa', 'Psat6g056440' => 'psa', 'Psat6g057360' => 'psa', 'Psat6g134120' => 'psa', 'Psat6g134160' => 'psa', 'Psat7g008640' => 'psa', 'Psat7g185240' => 'psa', 'PSO017G1330' => 'pso', 'PSO063G6097' => 'pso', 'PSO170G0835' => 'pso', 'PSO170G2499' => 'pso', 'PSO210G5058' => 'pso', 'PSO210G6154' => 'pso', 'PSO585G0031' => 'pso', 'PSO832G0264' => 'pso', 'PSO832G4288' => 'pso', 'QL03p027355' => 'qlo', 'QL03p027430' => 'qlo', 'QL04p081380' => 'qlo', 'QL06p015642' => 'qlo', 'QL06p015650' => 'qlo', 'QL06p015686' => 'qlo', 'QL12p042927' => 'qlo', 'QL93p1863_0035' => 'qlo', 'RcHm_v2.0_Chr3g0450581' => 'rch', 'RcHm_v2.0_Chr4g0390371' => 'rch', 'RcHm_v2.0_Chr4g0390381' => 'rch', 'RcHm_v2.0_Chr4g0390491' => 'rch', 'RcHm_v2.0_Chr4g0390501' => 'rch', 'RcHm_v2.0_Chr6g0289231' => 'rch', 'Rhsim04G0190400' => 'rsi', 'Rhsim04G0190500' => 'rsi', 'Rhsim04G0190600' => 'rsi', 'Rhsim13G0031400' => 'rsi', 'Rhsim13G0165600' => 'rsi', 'RhsimUnG0114600' => 'rsi', 'RhsimUnG0114700' => 'rsi', 'Sabra02G0034800' => 'sbr', 'Sabra02G0035100' => 'sbr', 'Sabra05G0168600' => 'sbr', 'Sabra05G0168800' => 'sbr', 'Sabra08G0123700' => 'sbr', 'Sabra10G0031900' => 'sbr', 'Sabra13G0039000' => 'sbr', 'SalBow2G0782' => 'sbo', 'SalBow2G1403' => 'sbo', 'SalBow4G0074' => 'sbo', 'SalBow4G2635' => 'sbo', 'SalBow5G3010' => 'sbo', 'Sc05g0000870' => 'sci', 'Sc05g0000890' => 'sci', 'Sc13g0005000' => 'sci', 'Sc13g0005030' => 'sci', 'Sc19g0003790' => 'sci', 'Sc19g0003800' => 'sci', 'Sed0003467' => 'sed', 'Sed0009355' => 'sed', 'Sed0009894' => 'sed', 'Sed0011972' => 'sed', 'Sed0021483' => 'sed', 'Sed0021750' => 'sed', 'Sed0026279' => 'sed', 'SEGI_05312' => 'sgi', 'SEGI_10112' => 'sgi', 'SEGI_15835' => 'sgi', 'SEGI_30386' => 'sgi', 'SEGI_34122' => 'sgi', 'SEGI_35063' => 'sgi', 'SGA_v2.0_scaffold101G29794' => 'sas', 'SGA_v2.0_scaffold1G00573' => 'sas', 'SGA_v2.0_scaffold79G25637' => 'sas', 'SGA_v2.0_scaffold88G27283' => 'sas', 'SGA_v2.0_scaffold88G27285' => 'sas', 'SGA_v2.0_scaffold88G27331' => 'sas', 'SHI09937' => 'shi', 'SMO119G0302' => 'smo', 'SMO137G0231' => 'smo', 'SMO367G1151' => 'smo', 'Solyc02g082000.3' => 'sly', 'Solyc06g031670.3' => 'sly', 'Solyc06g053810.3' => 'sly', 'Solyc07g025457.1' => 'sly', 'Solyc08g059740.1' => 'sly', 'Solyc08g059750.3' => 'sly', 'Solyc09g083370.3' => 'sly', 'Solyc12g038950.3' => 'sly', 'Sopen02g026630' => 'spe', 'Sopen06g018930' => 'spe', 'Sopen06g018940' => 'spe', 'Sopen08g009460' => 'spe', 'Sopen09g032290' => 'spe', 'Sp1g03080' => 'spa', 'Sp1g03090' => 'spa', 'Sp1g05480' => 'spa', 'Sp2g07860' => 'spa', 'Sp2g08430' => 'spa', 'Sp2g08440' => 'spa', 'Sp2g26200' => 'spa', 'Sp4g13170' => 'spa', 'Sp6g33840' => 'spa', 'SpUn1204_0010' => 'spa', 'TAR365G0908' => 'tar', 'TAR381G1270' => 'tar', 'TAR381G1651' => 'tar', 'TAR625G1131' => 'tar', 'TAR633G0962' => 'tar', 'TAR633G1729' => 'tar', 'TAR633G1864' => 'tar', 'TAR636G0221' => 'tar', 'TAR636G0314' => 'tar', 'TAR636G3202' => 'tar', 'THA.LOC104800805' => 'tha', 'THA.LOC104801096' => 'tha', 'THA.LOC104801555' => 'tha', 'THA.LOC104808491' => 'tha', 'THA.LOC104808595' => 'tha', 'THA.LOC104815985' => 'tha', 'THA.LOC104822250' => 'tha', 'THA.LOC104826071' => 'tha', 'Thecc.01G265200' => 'tca', 'Thecc.01G265300' => 'tca', 'Thecc.01G265700' => 'tca', 'Thecc.03G109100' => 'tca', 'Thecc.04G245900' => 'tca', 'Thecc.04G246000' => 'tca', 'Thhalv10003334m.g' => 'esa', 'Thhalv10005508m.g' => 'esa', 'Thhalv10005643m.g' => 'esa', 'Thhalv10007316m.g' => 'esa', 'Thhalv10009006m.g' => 'esa', 'Thhalv10009309m.g' => 'esa', 'Thhalv10014917m.g' => 'esa', 'Thhalv10014919m.g' => 'esa', 'Thhalv10015393m.g' => 'esa', 'Thhalv10016515m.g' => 'esa', 'Thhalv10029242m.g' => 'esa', 'TPR.G16654' => 'tpr', 'TPR.G20589' => 'tpr', 'TPR.G23029' => 'tpr', 'TPR.G27731' => 'tpr', 'TPR.G28889' => 'tpr', 'TPR.G28899' => 'tpr', 'TPR.G30846' => 'tpr', 'TPR.G5452' => 'tpr', 'TPR.G5713' => 'tpr', 'TPR.G9046' => 'tpr', 'TPR.G9061' => 'tpr', 'TWI09G1075' => 'twi', 'TWI12G0806' => 'twi', 'TWI18G0108' => 'twi', 'TWI53G1361' => 'twi', 'TWI73G0185' => 'twi', 'TWI73G0427' => 'twi', 'unitig_37.g12001' => 'ugi', 'unitig_747.g21660' => 'ugi', 'unitig_748.g7232' => 'ugi', 'unitig_748.g7315' => 'ugi', 'unitig_85.g27262' => 'ugi', 'unitig_92.g28220' => 'ugi', 'vmacro02632' => 'vma', 'vmacro08410' => 'vma', 'vmacro08411' => 'vma', 'vmacro15407' => 'vma', 'VMungo0251G3619' => 'vmu', 'VMungo0720G1204' => 'vmu', 'VMungo0720G1918' => 'vmu', 'VMungo0720G2387' => 'vmu', 'VMungo0720G2961' => 'vmu', 'VMungo1215G2154' => 'vmu', 'VMungo1383G2411' => 'vmu', 'Zm00001eb051130' => 'zma', 'Zm00001eb116830' => 'zma', 'Zm00001eb116850' => 'zma', 'Zm00001eb151740' => 'zma', 'Zm00001eb292360' => 'zma', 'Zm00001eb301640' => 'zma' ) $gf_id = 'HOM05D000856' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000856' ) $data_identifier = 'HOM05D000856' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 13, 'ath' => (int) 10, 'atr' => (int) 1, 'acertr' => (int) 8, 'cqu' => (int) 6, 'bca' => (int) 21, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 11, 'car' => (int) 9, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 8, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 5, 'fan' => (int) 16, 'fve' => (int) 6, 'gma' => (int) 11, 'ghi' => (int) 19, 'gra' => (int) 9, 'vvi' => (int) 7, 'han' => (int) 17, 'cav' => (int) 5, 'hma' => (int) 2, 'vpl' => (int) 2, 'sun' => (int) 7, 'lal' => (int) 9, 'lja' => (int) 5, 'lonja' => (int) 9, 'lsa' => (int) 5, 'mes' => (int) 8, 'mpo' => (int) 3, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 10, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 15, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 9, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 9, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 6, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 5, 'spa' => (int) 10, 'tar' => (int) 10, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 11, 'tpr' => (int) 11, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 4, 'vmu' => (int) 7, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb301640' $species_info = array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ) $local_species = 'cre' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000856', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p00010' => 'bna', 'A03p04160' => 'bna', 'A03p17160' => 'bna', 'A04p23370' => 'bna', 'A05p14860' => 'bna', 'A08p37020' => 'bna', 'A09p08050' => 'bna', 'A09p66800' => 'bna', 'A09p67940' => 'bna', 'A10p02680' => 'bna', 'A10p05320' => 'bna', 'Aa31LG1G20560' => 'aar', 'Aa31LG1G20610' => 'aar', 'Aa31LG1G7810' => 'aar', 'Aa31LG5G3590' => 'aar', 'Aa31LG5G6140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3819' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4683' => 'aag', 'Actinidia04480' => 'ach', 'Actinidia05466' => 'ach', 'Actinidia08445' => 'ach', 'Actinidia21170' => 'ach', 'Actinidia24812' => 'ach', 'Actinidia24951' => 'ach', 'Actinidia40088' => 'ach', 'Ah.02g111660' => 'amhyb', 'Ah.11g048900' => 'amhyb', 'Ah.11g049910' => 'amhyb', 'AL1G13870' => 'aly', 'AL1G13880' => 'aly', 'AL1G16760' => 'aly', 'AL390U10020' => 'aly', 'AL4G25520' => 'aly', 'AL6G19890' => 'aly', 'AL6G19900' => 'aly', 'AL6G19910' => 'aly', 'AL8G40100' => 'aly', 'Aqoxy2G03562' => 'aox', 'Aqoxy5G00316' => 'aox', 'Aqoxy5G00926' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1628KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1H403S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2FU6SJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.882I6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8YRY2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YN1SN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AF70II' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZA8L1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F916KL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHRD8H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KTZ8QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S22EMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8M29T' => 'arhy', 'AT1G04270' => 'ath', 'AT1G04280' => 'ath', 'AT1G06750' => 'ath', 'AT1G33850' => 'ath', 'AT2G30630' => 'ath', 'AT5G09490' => 'ath', 'AT5G09500' => 'ath', 'AT5G09510' => 'ath', 'AT5G43640' => 'ath', 'AT5G63070' => 'ath', 'ATR0605G315' => 'atr', 'Atru.chr11.175' => 'acertr', 'Atru.chr11.653' => 'acertr', 'Atru.chr3.1616' => 'acertr', 'Atru.chr4.2230' => 'acertr', 'Atru.chr4.2232' => 'acertr', 'Atru.chr5.1598' => 'acertr', 'Atru.chr5.1600' => 'acertr', 'Atru.chr5.2188' => 'acertr', 'AUR62008326' => 'cqu', 'AUR62011922' => 'cqu', 'AUR62011924' => 'cqu', 'AUR62021771' => 'cqu', 'AUR62032237' => 'cqu', 'AUR62032240' => 'cqu', 'BcaB01g05572' => 'bca', 'BcaB02g10337' => 'bca', 'BcaB04g19944' => 'bca', 'BcaB05g21548' => 'bca', 'BcaB05g21549' => 'bca', 'BcaB05g23227' => 'bca', 'BcaB06g26256' => 'bca', 'BcaB06g26257' => 'bca', 'BcaB06g28379' => 'bca', 'BcaC02g11159' => 'bca', 'BcaC03g13258' => 'bca', 'BcaC03g13259' => 'bca', 'BcaC05g24456' => 'bca', 'BcaC05g24457' => 'bca', 'BcaC07g36922' => 'bca', 'BcaC07g36923' => 'bca', 'BcaC07g42050' => 'bca', 'BcaC07g42176' => 'bca', 'BcaC07g42195' => 'bca', 'BcaC07g42196' => 'bca', 'BcaNung06674' => 'bca', 'BolC2t06351H' => 'bol', 'BolC2t06352H' => 'bol', 'BolC3t12993H' => 'bol', 'BolC4t23525H' => 'bol', 'BolC4t27475H' => 'bol', 'BolC5t29025H' => 'bol', 'BolC5t29026H' => 'bol', 'BolC8t46898H' => 'bol', 'BolC8t46899H' => 'bol', 'BolC8t52630H' => 'bol', 'BolC8t52765H' => 'bol', 'BolC9t53824H' => 'bol', 'BraA03t09760Z' => 'bra', 'BraA03t10990Z' => 'bra', 'BraA05t20413Z' => 'bra', 'BraA08t35602Z' => 'bra', 'BraA09t36458Z' => 'bra', 'BraA09t42018Z' => 'bra', 'BraA09t42129Z' => 'bra', 'BraA10t42536Z' => 'bra', 'BraA10t42537Z' => 'bra', 'C01p10690' => 'bna', 'C02p03890' => 'bna', 'C02p03900' => 'bna', 'C03p04620' => 'bna', 'C04p19870' => 'bna', 'C04p59670' => 'bna', 'C05p02460' => 'bna', 'C05p02470' => 'bna', 'C08p00980' => 'bna', 'C08p00990' => 'bna', 'C08p51030' => 'bna', 'C08p52360' => 'bna', 'C09p09120' => 'bna', 'CAN.G19.15' => 'can', 'CAN.G251.10' => 'can', 'CAN.G251.9' => 'can', 'CAN.G398.24' => 'can', 'CAN.G410.32' => 'can', 'CAN.G881.2' => 'can', 'CANSAT01G3025' => 'cansat', 'CANSAT78G1211' => 'cansat', 'CANSAT78G1218' => 'cansat', 'CANSAT78G1521' => 'cansat', 'CANSAT78G1670' => 'cansat', 'CARHR003600' => 'chi', 'CARHR003610' => 'chi', 'CARHR006290' => 'chi', 'CARHR006430' => 'chi', 'CARHR124110' => 'chi', 'CARHR203870' => 'chi', 'CARHR203880' => 'chi', 'CARHR203890' => 'chi', 'CARHR276880' => 'chi', 'Carub.0001s0346' => 'cru', 'Carub.0001s0347' => 'cru', 'Carub.0001s0607' => 'cru', 'Carub.0003s2768' => 'cru', 'Carub.0003s2769' => 'cru', 'Carub.0004s1178' => 'cru', 'Carub.0006s0806' => 'cru', 'Carub.0006s0807' => 'cru', 'Carub.0006s0808' => 'cru', 'Carub.0008s0501' => 'cru', 'Carub.0008s2379' => 'cru', 'Ca_08655_v3' => 'car', 'Ca_08922_v3' => 'car', 'Ca_08923_v3' => 'car', 'Ca_09119_v3' => 'car', 'Ca_09703_v3' => 'car', 'Ca_09705_v3' => 'car', 'Ca_09835_v3' => 'car', 'Ca_26403_v3' => 'car', 'Ca_30719_v3' => 'car', 'CBR_g17958' => 'cbr', 'CBR_g40516' => 'cbr', 'Cc00_g05350' => 'ccan', 'Cc01_g18690' => 'ccan', 'Cc03_g04830' => 'ccan', 'Cc03_g04850' => 'ccan', 'CDE02G4469' => 'cde', 'CDE06G0883' => 'cde', 'CDE06G1295' => 'cde', 'CDE06G1390' => 'cde', 'CDE07G0584' => 'cde', 'CDE07G1084' => 'cde', 'CDE08G1259' => 'cde', 'Cfa002341' => 'cfa', 'Cfa024337' => 'cfa', 'Ciclev10004749m.g' => 'ccl', 'Ciclev10006127m.g' => 'ccl', 'Ciclev10019720m.g' => 'ccl', 'Ciclev10022652m.g' => 'ccl', 'CiPaw.01G190400' => 'cil', 'CiPaw.01G190500' => 'cil', 'CiPaw.02G116400' => 'cil', 'CiPaw.02G116500' => 'cil', 'CiPaw.04G183000' => 'cil', 'CiPaw.04G183300' => 'cil', 'ClCG05G004610' => 'cla', 'ClCG05G004620' => 'cla', 'ClCG06G006730' => 'cla', 'ClCG06G006740' => 'cla', 'ClCG11G003690' => 'cla', 'COL.COLO4_08276' => 'col', 'COL.COLO4_08277' => 'col', 'COL.COLO4_15787' => 'col', 'COL.COLO4_15789' => 'col', 'Cpa.g.c44815' => 'cpa', 'Cpa.g.sc52.144' => 'cpa', 'Cpa.g.sc58.46' => 'cpa', 'Cpa.g.sc58.47' => 'cpa', 'Cre08.g360900' => 'cre', 'CsaV3_2G013030' => 'csa', 'CsaV3_2G013050' => 'csa', 'CsaV3_2G015620' => 'csa', 'CsaV3_3G012590' => 'csa', 'CsaV3_3G012600' => 'csa', 'CSS0001641' => 'camsi', 'CSS0008310' => 'camsi', 'CSS0013011' => 'camsi', 'CSS0017147' => 'camsi', 'CSS0022970' => 'camsi', 'CSS0025655' => 'camsi', 'CSS0028665' => 'camsi', 'CSS0029117' => 'camsi', 'CSS0032024' => 'camsi', 'CSS0039681' => 'camsi', 'CSS0046516' => 'camsi', 'CSS0050307' => 'camsi', 'DCAR_005871' => 'dca', 'DCAR_007342' => 'dca', 'DCAR_024228' => 'dca', 'DCAR_027277' => 'dca', 'DCAR_030718' => 'dca', 'Dinv20287' => 'din', 'Dinv22461' => 'din', 'Dinv22464' => 'din', 'Dinv29912' => 'din', 'Dinv29913' => 'din', 'Dinv34580' => 'din', 'Dinv34582' => 'din', 'Dinv44632' => 'din', 'Duzib052G0266' => 'dzi', 'Duzib133G0907' => 'dzi', 'Duzib133G1034' => 'dzi', 'Duzib138G0207' => 'dzi', 'Duzib138G0491' => 'dzi', 'Duzib151G0812' => 'dzi', 'Duzib151G1166' => 'dzi', 'Duzib168G0192' => 'dzi', 'Duzib211G0077' => 'dzi', 'Duzib212G0429' => 'dzi', 'Duzib212G0472' => 'dzi', 'ECA233G2617' => 'eca', 'ECA236G4188' => 'eca', 'ECA240G0936' => 'eca', 'ECA240G1129' => 'eca', 'ECA247G0623' => 'eca', 'EL10Ac5g10451' => 'bvu', 'EL10Ac5g10453' => 'bvu', 'EL10Ac5g10894' => 'bvu', 'Eucgr.H00192' => 'egr', 'Eucgr.H00193' => 'egr', 'Eucgr.H00194' => 'egr', 'Eucgr.J01562' => 'egr', 'Eucgr.K03301' => 'egr', 'FAN02G0632' => 'fan', 'FAN05G5378' => 'fan', 'FAN09G3247' => 'fan', 'FAN12G0435' => 'fan', 'FAN12G2426' => 'fan', 'FAN14G1707' => 'fan', 'FAN14G4725' => 'fan', 'FAN15G2071' => 'fan', 'FAN17G3065' => 'fan', 'FAN19G1376' => 'fan', 'FAN20G0354' => 'fan', 'FAN20G2429' => 'fan', 'FAN20G2658' => 'fan', 'FAN24G2343' => 'fan', 'FAN27G2362' => 'fan', 'FAN28G1765' => 'fan', 'FvH4_1g16020' => 'fve', 'FvH4_2g04890' => 'fve', 'FvH4_2g22270' => 'fve', 'FvH4_4g02630' => 'fve', 'FvH4_4g02640' => 'fve', 'FvH4_6g02650' => 'fve', 'Glyma.02G140600' => 'gma', 'Glyma.03G159900' => 'gma', 'Glyma.05G234800' => 'gma', 'Glyma.07G269600' => 'gma', 'Glyma.08G042300' => 'gma', 'Glyma.10G033500' => 'gma', 'Glyma.10G185200' => 'gma', 'Glyma.17G004300' => 'gma', 'Glyma.19G161900' => 'gma', 'Glyma.20G205100' => 'gma', 'Glyma.20G205200' => 'gma', 'Gohir.A01G139101' => 'ghi', 'Gohir.A02G035600' => 'ghi', 'Gohir.A02G117901' => 'ghi', 'Gohir.A07G210100' => 'ghi', 'Gohir.A07G210200' => 'ghi', 'Gohir.A08G061100' => 'ghi', 'Gohir.A09G223000' => 'ghi', 'Gohir.A09G223100' => 'ghi', 'Gohir.A10G113900' => 'ghi', 'Gohir.A10G114000' => 'ghi', 'Gohir.D02G042300' => 'ghi', 'Gohir.D07G216100' => 'ghi', 'Gohir.D07G216200' => 'ghi', 'Gohir.D08G070400' => 'ghi', 'Gohir.D09G225000' => 'ghi', 'Gohir.D09G225100' => 'ghi', 'Gohir.D10G152300' => 'ghi', 'Gohir.D10G153200' => 'ghi', 'Gohir.D11G133701' => 'ghi', 'Gorai.004G074100' => 'gra', 'Gorai.005G046800' => 'gra', 'Gorai.006G246500' => 'gra', 'Gorai.006G246600' => 'gra', 'Gorai.007G142900' => 'gra', 'Gorai.011G171000' => 'gra', 'Gorai.011G171100' => 'gra', 'Gorai.013G104300' => 'gra', 'Gorai.013G104400' => 'gra', 'GSVIVG01000754001' => 'vvi', 'GSVIVG01000756001' => 'vvi', 'GSVIVG01010903001' => 'vvi', 'GSVIVG01017623001' => 'vvi', 'GSVIVG01018113001' => 'vvi', 'GSVIVG01018116001' => 'vvi', 'GSVIVG01018118001' => 'vvi', 'HanXRQChr03g0076211' => 'han', 'HanXRQChr03g0092431' => 'han', 'HanXRQChr03g0092441' => 'han', 'HanXRQChr03g0092591' => 'han', 'HanXRQChr03g0092671' => 'han', 'HanXRQChr03g0092681' => 'han', 'HanXRQChr03g0092691' => 'han', 'HanXRQChr03g0092701' => 'han', 'HanXRQChr03g0092721' => 'han', 'HanXRQChr03g0092731' => 'han', 'HanXRQChr04g0113681' => 'han', 'HanXRQChr10g0281371' => 'han', 'HanXRQChr11g0337141' => 'han', 'HanXRQChr13g0424521' => 'han', 'HanXRQChr13g0424531' => 'han', 'HanXRQChr13g0424541' => 'han', 'HanXRQChr16g0498221' => 'han', 'Haze_04377' => 'cav', 'Haze_11298' => 'cav', 'Haze_24547' => 'cav', 'Haze_24550' => 'cav', 'Haze_26587' => 'cav', 'Hma1.2p1_0650F.1_g195410' => 'hma', 'Hma1.2p1_0893F.1_g233470' => 'hma', 'HPP92_006508' => 'vpl', 'HPP92_024780' => 'vpl', 'Hund02688' => 'sun', 'Hund09380' => 'sun', 'Hund09381' => 'sun', 'Hund09832' => 'sun', 'Hund09833' => 'sun', 'Hund11351' => 'sun', 'Hund11513' => 'sun', 'Lalb_Chr06g0162591' => 'lal', 'Lalb_Chr06g0162601' => 'lal', 'Lalb_Chr06g0169321' => 'lal', 'Lalb_Chr09g0330951' => 'lal', 'Lalb_Chr16g0387631' => 'lal', 'Lalb_Chr21g0306241' => 'lal', 'Lalb_Chr25g0290051' => 'lal', 'Lalb_Chr25g0290061' => 'lal', 'Lalb_Chr25g0290071' => 'lal', 'Lj1g0003876' => 'lja', 'Lj1P1207T36' => 'lonja', 'Lj2C1156G12' => 'lonja', 'Lj3A793G39' => 'lonja', 'Lj3C580G2' => 'lonja', 'Lj3C780G2' => 'lonja', 'Lj3C780T4' => 'lonja', 'Lj3C793G9' => 'lonja', 'Lj4g0012960' => 'lja', 'Lj5g0021252' => 'lja', 'Lj5g0021484' => 'lja', 'Lj5g0024528' => 'lja', 'Lj6A399T12' => 'lonja', 'Lj6A656G65' => 'lonja', 'Lsat_1_v5_gn_3_125500' => 'lsa', 'Lsat_1_v5_gn_3_125540' => 'lsa', 'Lsat_1_v5_gn_5_72701' => 'lsa', 'Lsat_1_v5_gn_8_91560' => 'lsa', 'Lsat_1_v5_gn_9_9640' => 'lsa', 'Manes.01G200600' => 'mes', 'Manes.01G200700' => 'mes', 'Manes.03G168900' => 'mes', 'Manes.03G169000' => 'mes', 'Manes.05G085801' => 'mes', 'Manes.05G086200' => 'mes', 'Manes.15G036700' => 'mes', 'Manes.15G036900' => 'mes', 'Mapoly0004s0172' => 'mpo', 'Mapoly0023s0001' => 'mpo', 'Mapoly0142s0012' => 'mpo', 'MBI01_g32854_MAGBIO' => 'mbi', 'MBI11_g24427_MAGBIO' => 'mbi', 'MBI11_g47319_MAGBIO' => 'mbi', 'MCO01G433' => 'mco', 'MD00G1187800' => 'mdo', 'MD04G1226500' => 'mdo', 'MD05G1203900' => 'mdo', 'MD10G1191100' => 'mdo', 'MD12G1243500' => 'mdo', 'MD13G1207000' => 'mdo', 'MD13G1207100' => 'mdo', 'MD16G1208600' => 'mdo', 'Medtr1g050352' => 'mtr', 'Medtr1g070385' => 'mtr', 'Medtr1g070450' => 'mtr', 'Medtr1g075200' => 'mtr', 'Medtr1g075250' => 'mtr', 'Medtr1g075260' => 'mtr', 'Medtr1g475250' => 'mtr', 'Medtr4g075450' => 'mtr', 'Medtr7g096300' => 'mtr', 'Medtr8g105110' => 'mtr', 'MELO3C006470.2' => 'cme', 'MELO3C006471.2' => 'cme', 'MELO3C020772.2' => 'cme', 'MELO3C026780.2' => 'cme', 'MELO3C026781.2' => 'cme', 'Migut.D00390' => 'egut', 'Migut.G00435' => 'egut', 'Migut.G00436' => 'egut', 'Migut.G00718' => 'egut', 'MSTRG.21891' => 'ama', 'MSTRG.26910' => 'ama', 'MSTRG.4099' => 'ama', 'MSTRG.9925' => 'ama', 'Nitab4.5_0000165g0010' => 'nta', 'Nitab4.5_0000209g0180' => 'nta', 'Nitab4.5_0000244g0440' => 'nta', 'Nitab4.5_0000525g0220' => 'nta', 'Nitab4.5_0001597g0020' => 'nta', 'Nitab4.5_0001878g0040' => 'nta', 'Nitab4.5_0001878g0060' => 'nta', 'Nitab4.5_0002838g0100' => 'nta', 'Nitab4.5_0002838g0120' => 'nta', 'Nitab4.5_0004798g0030' => 'nta', 'Nitab4.5_0005420g0010' => 'nta', 'Nitab4.5_0005507g0010' => 'nta', 'Nitab4.5_0005574g0020' => 'nta', 'Nitab4.5_0005838g0010' => 'nta', 'Nitab4.5_0010580g0020' => 'nta', 'Nn1g02599' => 'nnu', 'Nn1g02608' => 'nnu', 'Nn3g17742' => 'nnu', 'Nn3g19534' => 'nnu', 'Nn3g19535' => 'nnu', 'Oeu008790.1' => 'oeu', 'Oeu008792.1' => 'oeu', 'Oeu032590.1' => 'oeu', 'Oeu035349.1' => 'oeu', 'Oeu049791.1' => 'oeu', 'Os01g0774500' => 'osa', 'Os03g0628800' => 'osa', 'Os03g0798600' => 'osa', 'Os05g0508800' => 'osa', 'Peaxi162Scf00036g02018' => 'pax', 'Peaxi162Scf00578g00032' => 'pax', 'Peaxi162Scf00578g00317' => 'pax', 'Peaxi162Scf00785g00114' => 'pax', 'Peaxi162Scf00813g00119' => 'pax', 'Peaxi162Scf00906g00227' => 'pax', 'PGR004G0875' => 'pgr', 'PGR004G2424' => 'pgr', 'PGR031G1239' => 'pgr', 'PGR031G2474' => 'pgr', 'PGR044G0423' => 'pgr', 'PGSC0003DMG400001128' => 'stu', 'PGSC0003DMG400007336' => 'stu', 'PGSC0003DMG400016318' => 'stu', 'PGSC0003DMG400016319' => 'stu', 'PGSC0003DMG400018074' => 'stu', 'Phvul.001G157700' => 'pvu', 'Phvul.002G148550' => 'pvu', 'Phvul.002G320200' => 'pvu', 'Phvul.003G089200' => 'pvu', 'Phvul.007G126000' => 'pvu', 'Phvul.007G126100' => 'pvu', 'Phvul.007G178000' => 'pvu', 'Phvul.007G178200' => 'pvu', 'Potri.002G043000' => 'ptr', 'Potri.002G043200' => 'ptr', 'Potri.003G123750' => 'ptr', 'Potri.005G055401' => 'ptr', 'Potri.005G219700' => 'ptr', 'Potri.005G220000' => 'ptr', 'Potri.008G161901' => 'ptr', 'Potri.008G162000' => 'ptr', 'Potri.008G162400' => 'ptr', 'Potri.010G076900' => 'ptr', 'Pp3c12_9180' => 'ppa', 'Pp3c13_19770' => 'ppa', 'Pp3c14_22950' => 'ppa', 'Pp3c16_12160' => 'ppa', 'Pp3c27_7820' => 'ppa', 'Pp3c2_3490' => 'ppa', 'Pp3c3_23700' => 'ppa', 'Pp3c3_36520' => 'ppa', 'Pp3c4_15250' => 'ppa', 'PRCOL_00007002' => 'pco', 'Prupe.1G030600' => 'ppe', 'Prupe.1G030700' => 'ppe', 'Prupe.6G345200' => 'ppe', 'Prupe.8G230300' => 'ppe', 'Prupe.8G230500' => 'ppe', 'Psat3g059600' => 'psa', 'Psat5g200920' => 'psa', 'Psat6g056440' => 'psa', 'Psat6g057360' => 'psa', 'Psat6g134120' => 'psa', 'Psat6g134160' => 'psa', 'Psat7g008640' => 'psa', 'Psat7g185240' => 'psa', 'PSO017G1330' => 'pso', 'PSO063G6097' => 'pso', 'PSO170G0835' => 'pso', 'PSO170G2499' => 'pso', 'PSO210G5058' => 'pso', 'PSO210G6154' => 'pso', 'PSO585G0031' => 'pso', 'PSO832G0264' => 'pso', 'PSO832G4288' => 'pso', 'QL03p027355' => 'qlo', 'QL03p027430' => 'qlo', 'QL04p081380' => 'qlo', 'QL06p015642' => 'qlo', 'QL06p015650' => 'qlo', 'QL06p015686' => 'qlo', 'QL12p042927' => 'qlo', 'QL93p1863_0035' => 'qlo', 'RcHm_v2.0_Chr3g0450581' => 'rch', 'RcHm_v2.0_Chr4g0390371' => 'rch', 'RcHm_v2.0_Chr4g0390381' => 'rch', 'RcHm_v2.0_Chr4g0390491' => 'rch', 'RcHm_v2.0_Chr4g0390501' => 'rch', 'RcHm_v2.0_Chr6g0289231' => 'rch', 'Rhsim04G0190400' => 'rsi', 'Rhsim04G0190500' => 'rsi', 'Rhsim04G0190600' => 'rsi', 'Rhsim13G0031400' => 'rsi', 'Rhsim13G0165600' => 'rsi', 'RhsimUnG0114600' => 'rsi', 'RhsimUnG0114700' => 'rsi', 'Sabra02G0034800' => 'sbr', 'Sabra02G0035100' => 'sbr', 'Sabra05G0168600' => 'sbr', 'Sabra05G0168800' => 'sbr', 'Sabra08G0123700' => 'sbr', 'Sabra10G0031900' => 'sbr', 'Sabra13G0039000' => 'sbr', 'SalBow2G0782' => 'sbo', 'SalBow2G1403' => 'sbo', 'SalBow4G0074' => 'sbo', 'SalBow4G2635' => 'sbo', 'SalBow5G3010' => 'sbo', 'Sc05g0000870' => 'sci', 'Sc05g0000890' => 'sci', 'Sc13g0005000' => 'sci', 'Sc13g0005030' => 'sci', 'Sc19g0003790' => 'sci', 'Sc19g0003800' => 'sci', 'Sed0003467' => 'sed', 'Sed0009355' => 'sed', 'Sed0009894' => 'sed', 'Sed0011972' => 'sed', 'Sed0021483' => 'sed', 'Sed0021750' => 'sed', 'Sed0026279' => 'sed', 'SEGI_05312' => 'sgi', 'SEGI_10112' => 'sgi', 'SEGI_15835' => 'sgi', 'SEGI_30386' => 'sgi', 'SEGI_34122' => 'sgi', 'SEGI_35063' => 'sgi', 'SGA_v2.0_scaffold101G29794' => 'sas', 'SGA_v2.0_scaffold1G00573' => 'sas', 'SGA_v2.0_scaffold79G25637' => 'sas', 'SGA_v2.0_scaffold88G27283' => 'sas', 'SGA_v2.0_scaffold88G27285' => 'sas', 'SGA_v2.0_scaffold88G27331' => 'sas', 'SHI09937' => 'shi', 'SMO119G0302' => 'smo', 'SMO137G0231' => 'smo', 'SMO367G1151' => 'smo', 'Solyc02g082000.3' => 'sly', 'Solyc06g031670.3' => 'sly', 'Solyc06g053810.3' => 'sly', 'Solyc07g025457.1' => 'sly', 'Solyc08g059740.1' => 'sly', 'Solyc08g059750.3' => 'sly', 'Solyc09g083370.3' => 'sly', 'Solyc12g038950.3' => 'sly', 'Sopen02g026630' => 'spe', 'Sopen06g018930' => 'spe', 'Sopen06g018940' => 'spe', 'Sopen08g009460' => 'spe', 'Sopen09g032290' => 'spe', 'Sp1g03080' => 'spa', 'Sp1g03090' => 'spa', 'Sp1g05480' => 'spa', 'Sp2g07860' => 'spa', 'Sp2g08430' => 'spa', 'Sp2g08440' => 'spa', 'Sp2g26200' => 'spa', 'Sp4g13170' => 'spa', 'Sp6g33840' => 'spa', 'SpUn1204_0010' => 'spa', 'TAR365G0908' => 'tar', 'TAR381G1270' => 'tar', 'TAR381G1651' => 'tar', 'TAR625G1131' => 'tar', 'TAR633G0962' => 'tar', 'TAR633G1729' => 'tar', 'TAR633G1864' => 'tar', 'TAR636G0221' => 'tar', 'TAR636G0314' => 'tar', 'TAR636G3202' => 'tar', 'THA.LOC104800805' => 'tha', 'THA.LOC104801096' => 'tha', 'THA.LOC104801555' => 'tha', 'THA.LOC104808491' => 'tha', 'THA.LOC104808595' => 'tha', 'THA.LOC104815985' => 'tha', 'THA.LOC104822250' => 'tha', 'THA.LOC104826071' => 'tha', 'Thecc.01G265200' => 'tca', 'Thecc.01G265300' => 'tca', 'Thecc.01G265700' => 'tca', 'Thecc.03G109100' => 'tca', 'Thecc.04G245900' => 'tca', 'Thecc.04G246000' => 'tca', 'Thhalv10003334m.g' => 'esa', 'Thhalv10005508m.g' => 'esa', 'Thhalv10005643m.g' => 'esa', 'Thhalv10007316m.g' => 'esa', 'Thhalv10009006m.g' => 'esa', 'Thhalv10009309m.g' => 'esa', 'Thhalv10014917m.g' => 'esa', 'Thhalv10014919m.g' => 'esa', 'Thhalv10015393m.g' => 'esa', 'Thhalv10016515m.g' => 'esa', 'Thhalv10029242m.g' => 'esa', 'TPR.G16654' => 'tpr', 'TPR.G20589' => 'tpr', 'TPR.G23029' => 'tpr', 'TPR.G27731' => 'tpr', 'TPR.G28889' => 'tpr', 'TPR.G28899' => 'tpr', 'TPR.G30846' => 'tpr', 'TPR.G5452' => 'tpr', 'TPR.G5713' => 'tpr', 'TPR.G9046' => 'tpr', 'TPR.G9061' => 'tpr', 'TWI09G1075' => 'twi', 'TWI12G0806' => 'twi', 'TWI18G0108' => 'twi', 'TWI53G1361' => 'twi', 'TWI73G0185' => 'twi', 'TWI73G0427' => 'twi', 'unitig_37.g12001' => 'ugi', 'unitig_747.g21660' => 'ugi', 'unitig_748.g7232' => 'ugi', 'unitig_748.g7315' => 'ugi', 'unitig_85.g27262' => 'ugi', 'unitig_92.g28220' => 'ugi', 'vmacro02632' => 'vma', 'vmacro08410' => 'vma', 'vmacro08411' => 'vma', 'vmacro15407' => 'vma', 'VMungo0251G3619' => 'vmu', 'VMungo0720G1204' => 'vmu', 'VMungo0720G1918' => 'vmu', 'VMungo0720G2387' => 'vmu', 'VMungo0720G2961' => 'vmu', 'VMungo1215G2154' => 'vmu', 'VMungo1383G2411' => 'vmu', 'Zm00001eb051130' => 'zma', 'Zm00001eb116830' => 'zma', 'Zm00001eb116850' => 'zma', 'Zm00001eb151740' => 'zma', 'Zm00001eb292360' => 'zma', 'Zm00001eb301640' => 'zma' ), 'gf_id' => 'HOM05D000856', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000856' ), 'data_identifier' => 'HOM05D000856', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000856', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p00010' => 'bna', 'A03p04160' => 'bna', 'A03p17160' => 'bna', 'A04p23370' => 'bna', 'A05p14860' => 'bna', 'A08p37020' => 'bna', 'A09p08050' => 'bna', 'A09p66800' => 'bna', 'A09p67940' => 'bna', 'A10p02680' => 'bna', 'A10p05320' => 'bna', 'Aa31LG1G20560' => 'aar', 'Aa31LG1G20610' => 'aar', 'Aa31LG1G7810' => 'aar', 'Aa31LG5G3590' => 'aar', 'Aa31LG5G6140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3819' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4683' => 'aag', 'Actinidia04480' => 'ach', 'Actinidia05466' => 'ach', 'Actinidia08445' => 'ach', 'Actinidia21170' => 'ach', 'Actinidia24812' => 'ach', 'Actinidia24951' => 'ach', 'Actinidia40088' => 'ach', 'Ah.02g111660' => 'amhyb', 'Ah.11g048900' => 'amhyb', 'Ah.11g049910' => 'amhyb', 'AL1G13870' => 'aly', 'AL1G13880' => 'aly', 'AL1G16760' => 'aly', 'AL390U10020' => 'aly', 'AL4G25520' => 'aly', 'AL6G19890' => 'aly', 'AL6G19900' => 'aly', 'AL6G19910' => 'aly', 'AL8G40100' => 'aly', 'Aqoxy2G03562' => 'aox', 'Aqoxy5G00316' => 'aox', 'Aqoxy5G00926' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1628KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1H403S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2FU6SJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.882I6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8YRY2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YN1SN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AF70II' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZA8L1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F916KL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHRD8H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KTZ8QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S22EMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8M29T' => 'arhy', 'AT1G04270' => 'ath', 'AT1G04280' => 'ath', 'AT1G06750' => 'ath', 'AT1G33850' => 'ath', 'AT2G30630' => 'ath', 'AT5G09490' => 'ath', 'AT5G09500' => 'ath', 'AT5G09510' => 'ath', 'AT5G43640' => 'ath', 'AT5G63070' => 'ath', 'ATR0605G315' => 'atr', 'Atru.chr11.175' => 'acertr', 'Atru.chr11.653' => 'acertr', 'Atru.chr3.1616' => 'acertr', 'Atru.chr4.2230' => 'acertr', 'Atru.chr4.2232' => 'acertr', 'Atru.chr5.1598' => 'acertr', 'Atru.chr5.1600' => 'acertr', 'Atru.chr5.2188' => 'acertr', 'AUR62008326' => 'cqu', 'AUR62011922' => 'cqu', 'AUR62011924' => 'cqu', 'AUR62021771' => 'cqu', 'AUR62032237' => 'cqu', 'AUR62032240' => 'cqu', 'BcaB01g05572' => 'bca', 'BcaB02g10337' => 'bca', 'BcaB04g19944' => 'bca', 'BcaB05g21548' => 'bca', 'BcaB05g21549' => 'bca', 'BcaB05g23227' => 'bca', 'BcaB06g26256' => 'bca', 'BcaB06g26257' => 'bca', 'BcaB06g28379' => 'bca', 'BcaC02g11159' => 'bca', 'BcaC03g13258' => 'bca', 'BcaC03g13259' => 'bca', 'BcaC05g24456' => 'bca', 'BcaC05g24457' => 'bca', 'BcaC07g36922' => 'bca', 'BcaC07g36923' => 'bca', 'BcaC07g42050' => 'bca', 'BcaC07g42176' => 'bca', 'BcaC07g42195' => 'bca', 'BcaC07g42196' => 'bca', 'BcaNung06674' => 'bca', 'BolC2t06351H' => 'bol', 'BolC2t06352H' => 'bol', 'BolC3t12993H' => 'bol', 'BolC4t23525H' => 'bol', 'BolC4t27475H' => 'bol', 'BolC5t29025H' => 'bol', 'BolC5t29026H' => 'bol', 'BolC8t46898H' => 'bol', 'BolC8t46899H' => 'bol', 'BolC8t52630H' => 'bol', 'BolC8t52765H' => 'bol', 'BolC9t53824H' => 'bol', 'BraA03t09760Z' => 'bra', 'BraA03t10990Z' => 'bra', 'BraA05t20413Z' => 'bra', 'BraA08t35602Z' => 'bra', 'BraA09t36458Z' => 'bra', 'BraA09t42018Z' => 'bra', 'BraA09t42129Z' => 'bra', 'BraA10t42536Z' => 'bra', 'BraA10t42537Z' => 'bra', 'C01p10690' => 'bna', 'C02p03890' => 'bna', 'C02p03900' => 'bna', 'C03p04620' => 'bna', 'C04p19870' => 'bna', 'C04p59670' => 'bna', 'C05p02460' => 'bna', 'C05p02470' => 'bna', 'C08p00980' => 'bna', 'C08p00990' => 'bna', 'C08p51030' => 'bna', 'C08p52360' => 'bna', 'C09p09120' => 'bna', 'CAN.G19.15' => 'can', 'CAN.G251.10' => 'can', 'CAN.G251.9' => 'can', 'CAN.G398.24' => 'can', 'CAN.G410.32' => 'can', 'CAN.G881.2' => 'can', 'CANSAT01G3025' => 'cansat', 'CANSAT78G1211' => 'cansat', 'CANSAT78G1218' => 'cansat', 'CANSAT78G1521' => 'cansat', 'CANSAT78G1670' => 'cansat', 'CARHR003600' => 'chi', 'CARHR003610' => 'chi', 'CARHR006290' => 'chi', 'CARHR006430' => 'chi', 'CARHR124110' => 'chi', 'CARHR203870' => 'chi', 'CARHR203880' => 'chi', 'CARHR203890' => 'chi', 'CARHR276880' => 'chi', 'Carub.0001s0346' => 'cru', 'Carub.0001s0347' => 'cru', 'Carub.0001s0607' => 'cru', 'Carub.0003s2768' => 'cru', 'Carub.0003s2769' => 'cru', 'Carub.0004s1178' => 'cru', 'Carub.0006s0806' => 'cru', 'Carub.0006s0807' => 'cru', 'Carub.0006s0808' => 'cru', 'Carub.0008s0501' => 'cru', 'Carub.0008s2379' => 'cru', 'Ca_08655_v3' => 'car', 'Ca_08922_v3' => 'car', 'Ca_08923_v3' => 'car', 'Ca_09119_v3' => 'car', 'Ca_09703_v3' => 'car', 'Ca_09705_v3' => 'car', 'Ca_09835_v3' => 'car', 'Ca_26403_v3' => 'car', 'Ca_30719_v3' => 'car', 'CBR_g17958' => 'cbr', 'CBR_g40516' => 'cbr', 'Cc00_g05350' => 'ccan', 'Cc01_g18690' => 'ccan', 'Cc03_g04830' => 'ccan', 'Cc03_g04850' => 'ccan', 'CDE02G4469' => 'cde', 'CDE06G0883' => 'cde', 'CDE06G1295' => 'cde', 'CDE06G1390' => 'cde', 'CDE07G0584' => 'cde', 'CDE07G1084' => 'cde', 'CDE08G1259' => 'cde', 'Cfa002341' => 'cfa', 'Cfa024337' => 'cfa', 'Ciclev10004749m.g' => 'ccl', 'Ciclev10006127m.g' => 'ccl', 'Ciclev10019720m.g' => 'ccl', 'Ciclev10022652m.g' => 'ccl', 'CiPaw.01G190400' => 'cil', 'CiPaw.01G190500' => 'cil', 'CiPaw.02G116400' => 'cil', 'CiPaw.02G116500' => 'cil', 'CiPaw.04G183000' => 'cil', 'CiPaw.04G183300' => 'cil', 'ClCG05G004610' => 'cla', 'ClCG05G004620' => 'cla', 'ClCG06G006730' => 'cla', 'ClCG06G006740' => 'cla', 'ClCG11G003690' => 'cla', 'COL.COLO4_08276' => 'col', 'COL.COLO4_08277' => 'col', 'COL.COLO4_15787' => 'col', 'COL.COLO4_15789' => 'col', 'Cpa.g.c44815' => 'cpa', 'Cpa.g.sc52.144' => 'cpa', 'Cpa.g.sc58.46' => 'cpa', 'Cpa.g.sc58.47' => 'cpa', 'Cre08.g360900' => 'cre', 'CsaV3_2G013030' => 'csa', 'CsaV3_2G013050' => 'csa', 'CsaV3_2G015620' => 'csa', 'CsaV3_3G012590' => 'csa', 'CsaV3_3G012600' => 'csa', 'CSS0001641' => 'camsi', 'CSS0008310' => 'camsi', 'CSS0013011' => 'camsi', 'CSS0017147' => 'camsi', 'CSS0022970' => 'camsi', 'CSS0025655' => 'camsi', 'CSS0028665' => 'camsi', 'CSS0029117' => 'camsi', 'CSS0032024' => 'camsi', 'CSS0039681' => 'camsi', 'CSS0046516' => 'camsi', 'CSS0050307' => 'camsi', 'DCAR_005871' => 'dca', 'DCAR_007342' => 'dca', 'DCAR_024228' => 'dca', 'DCAR_027277' => 'dca', 'DCAR_030718' => 'dca', 'Dinv20287' => 'din', 'Dinv22461' => 'din', 'Dinv22464' => 'din', 'Dinv29912' => 'din', 'Dinv29913' => 'din', 'Dinv34580' => 'din', 'Dinv34582' => 'din', 'Dinv44632' => 'din', 'Duzib052G0266' => 'dzi', 'Duzib133G0907' => 'dzi', 'Duzib133G1034' => 'dzi', 'Duzib138G0207' => 'dzi', 'Duzib138G0491' => 'dzi', 'Duzib151G0812' => 'dzi', 'Duzib151G1166' => 'dzi', 'Duzib168G0192' => 'dzi', 'Duzib211G0077' => 'dzi', 'Duzib212G0429' => 'dzi', 'Duzib212G0472' => 'dzi', 'ECA233G2617' => 'eca', 'ECA236G4188' => 'eca', 'ECA240G0936' => 'eca', 'ECA240G1129' => 'eca', 'ECA247G0623' => 'eca', 'EL10Ac5g10451' => 'bvu', 'EL10Ac5g10453' => 'bvu', 'EL10Ac5g10894' => 'bvu', 'Eucgr.H00192' => 'egr', 'Eucgr.H00193' => 'egr', 'Eucgr.H00194' => 'egr', 'Eucgr.J01562' => 'egr', 'Eucgr.K03301' => 'egr', 'FAN02G0632' => 'fan', 'FAN05G5378' => 'fan', 'FAN09G3247' => 'fan', 'FAN12G0435' => 'fan', 'FAN12G2426' => 'fan', 'FAN14G1707' => 'fan', 'FAN14G4725' => 'fan', 'FAN15G2071' => 'fan', 'FAN17G3065' => 'fan', 'FAN19G1376' => 'fan', 'FAN20G0354' => 'fan', 'FAN20G2429' => 'fan', 'FAN20G2658' => 'fan', 'FAN24G2343' => 'fan', 'FAN27G2362' => 'fan', 'FAN28G1765' => 'fan', 'FvH4_1g16020' => 'fve', 'FvH4_2g04890' => 'fve', 'FvH4_2g22270' => 'fve', 'FvH4_4g02630' => 'fve', 'FvH4_4g02640' => 'fve', 'FvH4_6g02650' => 'fve', 'Glyma.02G140600' => 'gma', 'Glyma.03G159900' => 'gma', 'Glyma.05G234800' => 'gma', 'Glyma.07G269600' => 'gma', 'Glyma.08G042300' => 'gma', 'Glyma.10G033500' => 'gma', 'Glyma.10G185200' => 'gma', 'Glyma.17G004300' => 'gma', 'Glyma.19G161900' => 'gma', 'Glyma.20G205100' => 'gma', 'Glyma.20G205200' => 'gma', 'Gohir.A01G139101' => 'ghi', 'Gohir.A02G035600' => 'ghi', 'Gohir.A02G117901' => 'ghi', 'Gohir.A07G210100' => 'ghi', 'Gohir.A07G210200' => 'ghi', 'Gohir.A08G061100' => 'ghi', 'Gohir.A09G223000' => 'ghi', 'Gohir.A09G223100' => 'ghi', 'Gohir.A10G113900' => 'ghi', 'Gohir.A10G114000' => 'ghi', 'Gohir.D02G042300' => 'ghi', 'Gohir.D07G216100' => 'ghi', 'Gohir.D07G216200' => 'ghi', 'Gohir.D08G070400' => 'ghi', 'Gohir.D09G225000' => 'ghi', 'Gohir.D09G225100' => 'ghi', 'Gohir.D10G152300' => 'ghi', 'Gohir.D10G153200' => 'ghi', 'Gohir.D11G133701' => 'ghi', 'Gorai.004G074100' => 'gra', 'Gorai.005G046800' => 'gra', 'Gorai.006G246500' => 'gra', 'Gorai.006G246600' => 'gra', 'Gorai.007G142900' => 'gra', 'Gorai.011G171000' => 'gra', 'Gorai.011G171100' => 'gra', 'Gorai.013G104300' => 'gra', 'Gorai.013G104400' => 'gra', 'GSVIVG01000754001' => 'vvi', 'GSVIVG01000756001' => 'vvi', 'GSVIVG01010903001' => 'vvi', 'GSVIVG01017623001' => 'vvi', 'GSVIVG01018113001' => 'vvi', 'GSVIVG01018116001' => 'vvi', 'GSVIVG01018118001' => 'vvi', 'HanXRQChr03g0076211' => 'han', 'HanXRQChr03g0092431' => 'han', 'HanXRQChr03g0092441' => 'han', 'HanXRQChr03g0092591' => 'han', 'HanXRQChr03g0092671' => 'han', 'HanXRQChr03g0092681' => 'han', 'HanXRQChr03g0092691' => 'han', 'HanXRQChr03g0092701' => 'han', 'HanXRQChr03g0092721' => 'han', 'HanXRQChr03g0092731' => 'han', 'HanXRQChr04g0113681' => 'han', 'HanXRQChr10g0281371' => 'han', 'HanXRQChr11g0337141' => 'han', 'HanXRQChr13g0424521' => 'han', 'HanXRQChr13g0424531' => 'han', 'HanXRQChr13g0424541' => 'han', 'HanXRQChr16g0498221' => 'han', 'Haze_04377' => 'cav', 'Haze_11298' => 'cav', 'Haze_24547' => 'cav', 'Haze_24550' => 'cav', 'Haze_26587' => 'cav', 'Hma1.2p1_0650F.1_g195410' => 'hma', 'Hma1.2p1_0893F.1_g233470' => 'hma', 'HPP92_006508' => 'vpl', 'HPP92_024780' => 'vpl', 'Hund02688' => 'sun', 'Hund09380' => 'sun', 'Hund09381' => 'sun', 'Hund09832' => 'sun', 'Hund09833' => 'sun', 'Hund11351' => 'sun', 'Hund11513' => 'sun', 'Lalb_Chr06g0162591' => 'lal', 'Lalb_Chr06g0162601' => 'lal', 'Lalb_Chr06g0169321' => 'lal', 'Lalb_Chr09g0330951' => 'lal', 'Lalb_Chr16g0387631' => 'lal', 'Lalb_Chr21g0306241' => 'lal', 'Lalb_Chr25g0290051' => 'lal', 'Lalb_Chr25g0290061' => 'lal', 'Lalb_Chr25g0290071' => 'lal', 'Lj1g0003876' => 'lja', 'Lj1P1207T36' => 'lonja', 'Lj2C1156G12' => 'lonja', 'Lj3A793G39' => 'lonja', 'Lj3C580G2' => 'lonja', 'Lj3C780G2' => 'lonja', 'Lj3C780T4' => 'lonja', 'Lj3C793G9' => 'lonja', 'Lj4g0012960' => 'lja', 'Lj5g0021252' => 'lja', 'Lj5g0021484' => 'lja', 'Lj5g0024528' => 'lja', 'Lj6A399T12' => 'lonja', 'Lj6A656G65' => 'lonja', 'Lsat_1_v5_gn_3_125500' => 'lsa', 'Lsat_1_v5_gn_3_125540' => 'lsa', 'Lsat_1_v5_gn_5_72701' => 'lsa', 'Lsat_1_v5_gn_8_91560' => 'lsa', 'Lsat_1_v5_gn_9_9640' => 'lsa', 'Manes.01G200600' => 'mes', 'Manes.01G200700' => 'mes', 'Manes.03G168900' => 'mes', 'Manes.03G169000' => 'mes', 'Manes.05G085801' => 'mes', 'Manes.05G086200' => 'mes', 'Manes.15G036700' => 'mes', 'Manes.15G036900' => 'mes', 'Mapoly0004s0172' => 'mpo', 'Mapoly0023s0001' => 'mpo', 'Mapoly0142s0012' => 'mpo', 'MBI01_g32854_MAGBIO' => 'mbi', 'MBI11_g24427_MAGBIO' => 'mbi', 'MBI11_g47319_MAGBIO' => 'mbi', 'MCO01G433' => 'mco', 'MD00G1187800' => 'mdo', 'MD04G1226500' => 'mdo', 'MD05G1203900' => 'mdo', 'MD10G1191100' => 'mdo', 'MD12G1243500' => 'mdo', 'MD13G1207000' => 'mdo', 'MD13G1207100' => 'mdo', 'MD16G1208600' => 'mdo', 'Medtr1g050352' => 'mtr', 'Medtr1g070385' => 'mtr', 'Medtr1g070450' => 'mtr', 'Medtr1g075200' => 'mtr', 'Medtr1g075250' => 'mtr', 'Medtr1g075260' => 'mtr', 'Medtr1g475250' => 'mtr', 'Medtr4g075450' => 'mtr', 'Medtr7g096300' => 'mtr', 'Medtr8g105110' => 'mtr', 'MELO3C006470.2' => 'cme', 'MELO3C006471.2' => 'cme', 'MELO3C020772.2' => 'cme', 'MELO3C026780.2' => 'cme', 'MELO3C026781.2' => 'cme', 'Migut.D00390' => 'egut', 'Migut.G00435' => 'egut', 'Migut.G00436' => 'egut', 'Migut.G00718' => 'egut', 'MSTRG.21891' => 'ama', 'MSTRG.26910' => 'ama', 'MSTRG.4099' => 'ama', 'MSTRG.9925' => 'ama', 'Nitab4.5_0000165g0010' => 'nta', 'Nitab4.5_0000209g0180' => 'nta', 'Nitab4.5_0000244g0440' => 'nta', 'Nitab4.5_0000525g0220' => 'nta', 'Nitab4.5_0001597g0020' => 'nta', 'Nitab4.5_0001878g0040' => 'nta', 'Nitab4.5_0001878g0060' => 'nta', 'Nitab4.5_0002838g0100' => 'nta', 'Nitab4.5_0002838g0120' => 'nta', 'Nitab4.5_0004798g0030' => 'nta', 'Nitab4.5_0005420g0010' => 'nta', 'Nitab4.5_0005507g0010' => 'nta', 'Nitab4.5_0005574g0020' => 'nta', 'Nitab4.5_0005838g0010' => 'nta', 'Nitab4.5_0010580g0020' => 'nta', 'Nn1g02599' => 'nnu', 'Nn1g02608' => 'nnu', 'Nn3g17742' => 'nnu', 'Nn3g19534' => 'nnu', 'Nn3g19535' => 'nnu', 'Oeu008790.1' => 'oeu', 'Oeu008792.1' => 'oeu', 'Oeu032590.1' => 'oeu', 'Oeu035349.1' => 'oeu', 'Oeu049791.1' => 'oeu', 'Os01g0774500' => 'osa', 'Os03g0628800' => 'osa', 'Os03g0798600' => 'osa', 'Os05g0508800' => 'osa', 'Peaxi162Scf00036g02018' => 'pax', 'Peaxi162Scf00578g00032' => 'pax', 'Peaxi162Scf00578g00317' => 'pax', 'Peaxi162Scf00785g00114' => 'pax', 'Peaxi162Scf00813g00119' => 'pax', 'Peaxi162Scf00906g00227' => 'pax', 'PGR004G0875' => 'pgr', 'PGR004G2424' => 'pgr', 'PGR031G1239' => 'pgr', 'PGR031G2474' => 'pgr', 'PGR044G0423' => 'pgr', 'PGSC0003DMG400001128' => 'stu', 'PGSC0003DMG400007336' => 'stu', 'PGSC0003DMG400016318' => 'stu', 'PGSC0003DMG400016319' => 'stu', 'PGSC0003DMG400018074' => 'stu', 'Phvul.001G157700' => 'pvu', 'Phvul.002G148550' => 'pvu', 'Phvul.002G320200' => 'pvu', 'Phvul.003G089200' => 'pvu', 'Phvul.007G126000' => 'pvu', 'Phvul.007G126100' => 'pvu', 'Phvul.007G178000' => 'pvu', 'Phvul.007G178200' => 'pvu', 'Potri.002G043000' => 'ptr', 'Potri.002G043200' => 'ptr', 'Potri.003G123750' => 'ptr', 'Potri.005G055401' => 'ptr', 'Potri.005G219700' => 'ptr', 'Potri.005G220000' => 'ptr', 'Potri.008G161901' => 'ptr', 'Potri.008G162000' => 'ptr', 'Potri.008G162400' => 'ptr', 'Potri.010G076900' => 'ptr', 'Pp3c12_9180' => 'ppa', 'Pp3c13_19770' => 'ppa', 'Pp3c14_22950' => 'ppa', 'Pp3c16_12160' => 'ppa', 'Pp3c27_7820' => 'ppa', 'Pp3c2_3490' => 'ppa', 'Pp3c3_23700' => 'ppa', 'Pp3c3_36520' => 'ppa', 'Pp3c4_15250' => 'ppa', 'PRCOL_00007002' => 'pco', 'Prupe.1G030600' => 'ppe', 'Prupe.1G030700' => 'ppe', 'Prupe.6G345200' => 'ppe', 'Prupe.8G230300' => 'ppe', 'Prupe.8G230500' => 'ppe', 'Psat3g059600' => 'psa', 'Psat5g200920' => 'psa', 'Psat6g056440' => 'psa', 'Psat6g057360' => 'psa', 'Psat6g134120' => 'psa', 'Psat6g134160' => 'psa', 'Psat7g008640' => 'psa', 'Psat7g185240' => 'psa', 'PSO017G1330' => 'pso', 'PSO063G6097' => 'pso', 'PSO170G0835' => 'pso', 'PSO170G2499' => 'pso', 'PSO210G5058' => 'pso', 'PSO210G6154' => 'pso', 'PSO585G0031' => 'pso', 'PSO832G0264' => 'pso', 'PSO832G4288' => 'pso', 'QL03p027355' => 'qlo', 'QL03p027430' => 'qlo', 'QL04p081380' => 'qlo', 'QL06p015642' => 'qlo', 'QL06p015650' => 'qlo', 'QL06p015686' => 'qlo', 'QL12p042927' => 'qlo', 'QL93p1863_0035' => 'qlo', 'RcHm_v2.0_Chr3g0450581' => 'rch', 'RcHm_v2.0_Chr4g0390371' => 'rch', 'RcHm_v2.0_Chr4g0390381' => 'rch', 'RcHm_v2.0_Chr4g0390491' => 'rch', 'RcHm_v2.0_Chr4g0390501' => 'rch', 'RcHm_v2.0_Chr6g0289231' => 'rch', 'Rhsim04G0190400' => 'rsi', 'Rhsim04G0190500' => 'rsi', 'Rhsim04G0190600' => 'rsi', 'Rhsim13G0031400' => 'rsi', 'Rhsim13G0165600' => 'rsi', 'RhsimUnG0114600' => 'rsi', 'RhsimUnG0114700' => 'rsi', 'Sabra02G0034800' => 'sbr', 'Sabra02G0035100' => 'sbr', 'Sabra05G0168600' => 'sbr', 'Sabra05G0168800' => 'sbr', 'Sabra08G0123700' => 'sbr', 'Sabra10G0031900' => 'sbr', 'Sabra13G0039000' => 'sbr', 'SalBow2G0782' => 'sbo', 'SalBow2G1403' => 'sbo', 'SalBow4G0074' => 'sbo', 'SalBow4G2635' => 'sbo', 'SalBow5G3010' => 'sbo', 'Sc05g0000870' => 'sci', 'Sc05g0000890' => 'sci', 'Sc13g0005000' => 'sci', 'Sc13g0005030' => 'sci', 'Sc19g0003790' => 'sci', 'Sc19g0003800' => 'sci', 'Sed0003467' => 'sed', 'Sed0009355' => 'sed', 'Sed0009894' => 'sed', 'Sed0011972' => 'sed', 'Sed0021483' => 'sed', 'Sed0021750' => 'sed', 'Sed0026279' => 'sed', 'SEGI_05312' => 'sgi', 'SEGI_10112' => 'sgi', 'SEGI_15835' => 'sgi', 'SEGI_30386' => 'sgi', 'SEGI_34122' => 'sgi', 'SEGI_35063' => 'sgi', 'SGA_v2.0_scaffold101G29794' => 'sas', 'SGA_v2.0_scaffold1G00573' => 'sas', 'SGA_v2.0_scaffold79G25637' => 'sas', 'SGA_v2.0_scaffold88G27283' => 'sas', 'SGA_v2.0_scaffold88G27285' => 'sas', 'SGA_v2.0_scaffold88G27331' => 'sas', 'SHI09937' => 'shi', 'SMO119G0302' => 'smo', 'SMO137G0231' => 'smo', 'SMO367G1151' => 'smo', 'Solyc02g082000.3' => 'sly', 'Solyc06g031670.3' => 'sly', 'Solyc06g053810.3' => 'sly', 'Solyc07g025457.1' => 'sly', 'Solyc08g059740.1' => 'sly', 'Solyc08g059750.3' => 'sly', 'Solyc09g083370.3' => 'sly', 'Solyc12g038950.3' => 'sly', 'Sopen02g026630' => 'spe', 'Sopen06g018930' => 'spe', 'Sopen06g018940' => 'spe', 'Sopen08g009460' => 'spe', 'Sopen09g032290' => 'spe', 'Sp1g03080' => 'spa', 'Sp1g03090' => 'spa', 'Sp1g05480' => 'spa', 'Sp2g07860' => 'spa', 'Sp2g08430' => 'spa', 'Sp2g08440' => 'spa', 'Sp2g26200' => 'spa', 'Sp4g13170' => 'spa', 'Sp6g33840' => 'spa', 'SpUn1204_0010' => 'spa', 'TAR365G0908' => 'tar', 'TAR381G1270' => 'tar', 'TAR381G1651' => 'tar', 'TAR625G1131' => 'tar', 'TAR633G0962' => 'tar', 'TAR633G1729' => 'tar', 'TAR633G1864' => 'tar', 'TAR636G0221' => 'tar', 'TAR636G0314' => 'tar', 'TAR636G3202' => 'tar', 'THA.LOC104800805' => 'tha', 'THA.LOC104801096' => 'tha', 'THA.LOC104801555' => 'tha', 'THA.LOC104808491' => 'tha', 'THA.LOC104808595' => 'tha', 'THA.LOC104815985' => 'tha', 'THA.LOC104822250' => 'tha', 'THA.LOC104826071' => 'tha', 'Thecc.01G265200' => 'tca', 'Thecc.01G265300' => 'tca', 'Thecc.01G265700' => 'tca', 'Thecc.03G109100' => 'tca', 'Thecc.04G245900' => 'tca', 'Thecc.04G246000' => 'tca', 'Thhalv10003334m.g' => 'esa', 'Thhalv10005508m.g' => 'esa', 'Thhalv10005643m.g' => 'esa', 'Thhalv10007316m.g' => 'esa', 'Thhalv10009006m.g' => 'esa', 'Thhalv10009309m.g' => 'esa', 'Thhalv10014917m.g' => 'esa', 'Thhalv10014919m.g' => 'esa', 'Thhalv10015393m.g' => 'esa', 'Thhalv10016515m.g' => 'esa', 'Thhalv10029242m.g' => 'esa', 'TPR.G16654' => 'tpr', 'TPR.G20589' => 'tpr', 'TPR.G23029' => 'tpr', 'TPR.G27731' => 'tpr', 'TPR.G28889' => 'tpr', 'TPR.G28899' => 'tpr', 'TPR.G30846' => 'tpr', 'TPR.G5452' => 'tpr', 'TPR.G5713' => 'tpr', 'TPR.G9046' => 'tpr', 'TPR.G9061' => 'tpr', 'TWI09G1075' => 'twi', 'TWI12G0806' => 'twi', 'TWI18G0108' => 'twi', 'TWI53G1361' => 'twi', 'TWI73G0185' => 'twi', 'TWI73G0427' => 'twi', 'unitig_37.g12001' => 'ugi', 'unitig_747.g21660' => 'ugi', 'unitig_748.g7232' => 'ugi', 'unitig_748.g7315' => 'ugi', 'unitig_85.g27262' => 'ugi', 'unitig_92.g28220' => 'ugi', 'vmacro02632' => 'vma', 'vmacro08410' => 'vma', 'vmacro08411' => 'vma', 'vmacro15407' => 'vma', 'VMungo0251G3619' => 'vmu', 'VMungo0720G1204' => 'vmu', 'VMungo0720G1918' => 'vmu', 'VMungo0720G2387' => 'vmu', 'VMungo0720G2961' => 'vmu', 'VMungo1215G2154' => 'vmu', 'VMungo1383G2411' => 'vmu', 'Zm00001eb051130' => 'zma', 'Zm00001eb116830' => 'zma', 'Zm00001eb116850' => 'zma', 'Zm00001eb151740' => 'zma', 'Zm00001eb292360' => 'zma', 'Zm00001eb301640' => 'zma' ) $gf_id = 'HOM05D000856' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000856' ) $data_identifier = 'HOM05D000856' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 13, 'ath' => (int) 10, 'atr' => (int) 1, 'acertr' => (int) 8, 'cqu' => (int) 6, 'bca' => (int) 21, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 11, 'car' => (int) 9, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 8, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 5, 'fan' => (int) 16, 'fve' => (int) 6, 'gma' => (int) 11, 'ghi' => (int) 19, 'gra' => (int) 9, 'vvi' => (int) 7, 'han' => (int) 17, 'cav' => (int) 5, 'hma' => (int) 2, 'vpl' => (int) 2, 'sun' => (int) 7, 'lal' => (int) 9, 'lja' => (int) 5, 'lonja' => (int) 9, 'lsa' => (int) 5, 'mes' => (int) 8, 'mpo' => (int) 3, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 10, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 15, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 9, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 9, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 6, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 5, 'spa' => (int) 10, 'tar' => (int) 10, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 11, 'tpr' => (int) 11, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 4, 'vmu' => (int) 7, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb301640' $species_info = array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ) $local_species = 'car' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000856', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p00010' => 'bna', 'A03p04160' => 'bna', 'A03p17160' => 'bna', 'A04p23370' => 'bna', 'A05p14860' => 'bna', 'A08p37020' => 'bna', 'A09p08050' => 'bna', 'A09p66800' => 'bna', 'A09p67940' => 'bna', 'A10p02680' => 'bna', 'A10p05320' => 'bna', 'Aa31LG1G20560' => 'aar', 'Aa31LG1G20610' => 'aar', 'Aa31LG1G7810' => 'aar', 'Aa31LG5G3590' => 'aar', 'Aa31LG5G6140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3819' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4683' => 'aag', 'Actinidia04480' => 'ach', 'Actinidia05466' => 'ach', 'Actinidia08445' => 'ach', 'Actinidia21170' => 'ach', 'Actinidia24812' => 'ach', 'Actinidia24951' => 'ach', 'Actinidia40088' => 'ach', 'Ah.02g111660' => 'amhyb', 'Ah.11g048900' => 'amhyb', 'Ah.11g049910' => 'amhyb', 'AL1G13870' => 'aly', 'AL1G13880' => 'aly', 'AL1G16760' => 'aly', 'AL390U10020' => 'aly', 'AL4G25520' => 'aly', 'AL6G19890' => 'aly', 'AL6G19900' => 'aly', 'AL6G19910' => 'aly', 'AL8G40100' => 'aly', 'Aqoxy2G03562' => 'aox', 'Aqoxy5G00316' => 'aox', 'Aqoxy5G00926' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1628KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1H403S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2FU6SJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.882I6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8YRY2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YN1SN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AF70II' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZA8L1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F916KL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHRD8H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KTZ8QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S22EMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8M29T' => 'arhy', 'AT1G04270' => 'ath', 'AT1G04280' => 'ath', 'AT1G06750' => 'ath', 'AT1G33850' => 'ath', 'AT2G30630' => 'ath', 'AT5G09490' => 'ath', 'AT5G09500' => 'ath', 'AT5G09510' => 'ath', 'AT5G43640' => 'ath', 'AT5G63070' => 'ath', 'ATR0605G315' => 'atr', 'Atru.chr11.175' => 'acertr', 'Atru.chr11.653' => 'acertr', 'Atru.chr3.1616' => 'acertr', 'Atru.chr4.2230' => 'acertr', 'Atru.chr4.2232' => 'acertr', 'Atru.chr5.1598' => 'acertr', 'Atru.chr5.1600' => 'acertr', 'Atru.chr5.2188' => 'acertr', 'AUR62008326' => 'cqu', 'AUR62011922' => 'cqu', 'AUR62011924' => 'cqu', 'AUR62021771' => 'cqu', 'AUR62032237' => 'cqu', 'AUR62032240' => 'cqu', 'BcaB01g05572' => 'bca', 'BcaB02g10337' => 'bca', 'BcaB04g19944' => 'bca', 'BcaB05g21548' => 'bca', 'BcaB05g21549' => 'bca', 'BcaB05g23227' => 'bca', 'BcaB06g26256' => 'bca', 'BcaB06g26257' => 'bca', 'BcaB06g28379' => 'bca', 'BcaC02g11159' => 'bca', 'BcaC03g13258' => 'bca', 'BcaC03g13259' => 'bca', 'BcaC05g24456' => 'bca', 'BcaC05g24457' => 'bca', 'BcaC07g36922' => 'bca', 'BcaC07g36923' => 'bca', 'BcaC07g42050' => 'bca', 'BcaC07g42176' => 'bca', 'BcaC07g42195' => 'bca', 'BcaC07g42196' => 'bca', 'BcaNung06674' => 'bca', 'BolC2t06351H' => 'bol', 'BolC2t06352H' => 'bol', 'BolC3t12993H' => 'bol', 'BolC4t23525H' => 'bol', 'BolC4t27475H' => 'bol', 'BolC5t29025H' => 'bol', 'BolC5t29026H' => 'bol', 'BolC8t46898H' => 'bol', 'BolC8t46899H' => 'bol', 'BolC8t52630H' => 'bol', 'BolC8t52765H' => 'bol', 'BolC9t53824H' => 'bol', 'BraA03t09760Z' => 'bra', 'BraA03t10990Z' => 'bra', 'BraA05t20413Z' => 'bra', 'BraA08t35602Z' => 'bra', 'BraA09t36458Z' => 'bra', 'BraA09t42018Z' => 'bra', 'BraA09t42129Z' => 'bra', 'BraA10t42536Z' => 'bra', 'BraA10t42537Z' => 'bra', 'C01p10690' => 'bna', 'C02p03890' => 'bna', 'C02p03900' => 'bna', 'C03p04620' => 'bna', 'C04p19870' => 'bna', 'C04p59670' => 'bna', 'C05p02460' => 'bna', 'C05p02470' => 'bna', 'C08p00980' => 'bna', 'C08p00990' => 'bna', 'C08p51030' => 'bna', 'C08p52360' => 'bna', 'C09p09120' => 'bna', 'CAN.G19.15' => 'can', 'CAN.G251.10' => 'can', 'CAN.G251.9' => 'can', 'CAN.G398.24' => 'can', 'CAN.G410.32' => 'can', 'CAN.G881.2' => 'can', 'CANSAT01G3025' => 'cansat', 'CANSAT78G1211' => 'cansat', 'CANSAT78G1218' => 'cansat', 'CANSAT78G1521' => 'cansat', 'CANSAT78G1670' => 'cansat', 'CARHR003600' => 'chi', 'CARHR003610' => 'chi', 'CARHR006290' => 'chi', 'CARHR006430' => 'chi', 'CARHR124110' => 'chi', 'CARHR203870' => 'chi', 'CARHR203880' => 'chi', 'CARHR203890' => 'chi', 'CARHR276880' => 'chi', 'Carub.0001s0346' => 'cru', 'Carub.0001s0347' => 'cru', 'Carub.0001s0607' => 'cru', 'Carub.0003s2768' => 'cru', 'Carub.0003s2769' => 'cru', 'Carub.0004s1178' => 'cru', 'Carub.0006s0806' => 'cru', 'Carub.0006s0807' => 'cru', 'Carub.0006s0808' => 'cru', 'Carub.0008s0501' => 'cru', 'Carub.0008s2379' => 'cru', 'Ca_08655_v3' => 'car', 'Ca_08922_v3' => 'car', 'Ca_08923_v3' => 'car', 'Ca_09119_v3' => 'car', 'Ca_09703_v3' => 'car', 'Ca_09705_v3' => 'car', 'Ca_09835_v3' => 'car', 'Ca_26403_v3' => 'car', 'Ca_30719_v3' => 'car', 'CBR_g17958' => 'cbr', 'CBR_g40516' => 'cbr', 'Cc00_g05350' => 'ccan', 'Cc01_g18690' => 'ccan', 'Cc03_g04830' => 'ccan', 'Cc03_g04850' => 'ccan', 'CDE02G4469' => 'cde', 'CDE06G0883' => 'cde', 'CDE06G1295' => 'cde', 'CDE06G1390' => 'cde', 'CDE07G0584' => 'cde', 'CDE07G1084' => 'cde', 'CDE08G1259' => 'cde', 'Cfa002341' => 'cfa', 'Cfa024337' => 'cfa', 'Ciclev10004749m.g' => 'ccl', 'Ciclev10006127m.g' => 'ccl', 'Ciclev10019720m.g' => 'ccl', 'Ciclev10022652m.g' => 'ccl', 'CiPaw.01G190400' => 'cil', 'CiPaw.01G190500' => 'cil', 'CiPaw.02G116400' => 'cil', 'CiPaw.02G116500' => 'cil', 'CiPaw.04G183000' => 'cil', 'CiPaw.04G183300' => 'cil', 'ClCG05G004610' => 'cla', 'ClCG05G004620' => 'cla', 'ClCG06G006730' => 'cla', 'ClCG06G006740' => 'cla', 'ClCG11G003690' => 'cla', 'COL.COLO4_08276' => 'col', 'COL.COLO4_08277' => 'col', 'COL.COLO4_15787' => 'col', 'COL.COLO4_15789' => 'col', 'Cpa.g.c44815' => 'cpa', 'Cpa.g.sc52.144' => 'cpa', 'Cpa.g.sc58.46' => 'cpa', 'Cpa.g.sc58.47' => 'cpa', 'Cre08.g360900' => 'cre', 'CsaV3_2G013030' => 'csa', 'CsaV3_2G013050' => 'csa', 'CsaV3_2G015620' => 'csa', 'CsaV3_3G012590' => 'csa', 'CsaV3_3G012600' => 'csa', 'CSS0001641' => 'camsi', 'CSS0008310' => 'camsi', 'CSS0013011' => 'camsi', 'CSS0017147' => 'camsi', 'CSS0022970' => 'camsi', 'CSS0025655' => 'camsi', 'CSS0028665' => 'camsi', 'CSS0029117' => 'camsi', 'CSS0032024' => 'camsi', 'CSS0039681' => 'camsi', 'CSS0046516' => 'camsi', 'CSS0050307' => 'camsi', 'DCAR_005871' => 'dca', 'DCAR_007342' => 'dca', 'DCAR_024228' => 'dca', 'DCAR_027277' => 'dca', 'DCAR_030718' => 'dca', 'Dinv20287' => 'din', 'Dinv22461' => 'din', 'Dinv22464' => 'din', 'Dinv29912' => 'din', 'Dinv29913' => 'din', 'Dinv34580' => 'din', 'Dinv34582' => 'din', 'Dinv44632' => 'din', 'Duzib052G0266' => 'dzi', 'Duzib133G0907' => 'dzi', 'Duzib133G1034' => 'dzi', 'Duzib138G0207' => 'dzi', 'Duzib138G0491' => 'dzi', 'Duzib151G0812' => 'dzi', 'Duzib151G1166' => 'dzi', 'Duzib168G0192' => 'dzi', 'Duzib211G0077' => 'dzi', 'Duzib212G0429' => 'dzi', 'Duzib212G0472' => 'dzi', 'ECA233G2617' => 'eca', 'ECA236G4188' => 'eca', 'ECA240G0936' => 'eca', 'ECA240G1129' => 'eca', 'ECA247G0623' => 'eca', 'EL10Ac5g10451' => 'bvu', 'EL10Ac5g10453' => 'bvu', 'EL10Ac5g10894' => 'bvu', 'Eucgr.H00192' => 'egr', 'Eucgr.H00193' => 'egr', 'Eucgr.H00194' => 'egr', 'Eucgr.J01562' => 'egr', 'Eucgr.K03301' => 'egr', 'FAN02G0632' => 'fan', 'FAN05G5378' => 'fan', 'FAN09G3247' => 'fan', 'FAN12G0435' => 'fan', 'FAN12G2426' => 'fan', 'FAN14G1707' => 'fan', 'FAN14G4725' => 'fan', 'FAN15G2071' => 'fan', 'FAN17G3065' => 'fan', 'FAN19G1376' => 'fan', 'FAN20G0354' => 'fan', 'FAN20G2429' => 'fan', 'FAN20G2658' => 'fan', 'FAN24G2343' => 'fan', 'FAN27G2362' => 'fan', 'FAN28G1765' => 'fan', 'FvH4_1g16020' => 'fve', 'FvH4_2g04890' => 'fve', 'FvH4_2g22270' => 'fve', 'FvH4_4g02630' => 'fve', 'FvH4_4g02640' => 'fve', 'FvH4_6g02650' => 'fve', 'Glyma.02G140600' => 'gma', 'Glyma.03G159900' => 'gma', 'Glyma.05G234800' => 'gma', 'Glyma.07G269600' => 'gma', 'Glyma.08G042300' => 'gma', 'Glyma.10G033500' => 'gma', 'Glyma.10G185200' => 'gma', 'Glyma.17G004300' => 'gma', 'Glyma.19G161900' => 'gma', 'Glyma.20G205100' => 'gma', 'Glyma.20G205200' => 'gma', 'Gohir.A01G139101' => 'ghi', 'Gohir.A02G035600' => 'ghi', 'Gohir.A02G117901' => 'ghi', 'Gohir.A07G210100' => 'ghi', 'Gohir.A07G210200' => 'ghi', 'Gohir.A08G061100' => 'ghi', 'Gohir.A09G223000' => 'ghi', 'Gohir.A09G223100' => 'ghi', 'Gohir.A10G113900' => 'ghi', 'Gohir.A10G114000' => 'ghi', 'Gohir.D02G042300' => 'ghi', 'Gohir.D07G216100' => 'ghi', 'Gohir.D07G216200' => 'ghi', 'Gohir.D08G070400' => 'ghi', 'Gohir.D09G225000' => 'ghi', 'Gohir.D09G225100' => 'ghi', 'Gohir.D10G152300' => 'ghi', 'Gohir.D10G153200' => 'ghi', 'Gohir.D11G133701' => 'ghi', 'Gorai.004G074100' => 'gra', 'Gorai.005G046800' => 'gra', 'Gorai.006G246500' => 'gra', 'Gorai.006G246600' => 'gra', 'Gorai.007G142900' => 'gra', 'Gorai.011G171000' => 'gra', 'Gorai.011G171100' => 'gra', 'Gorai.013G104300' => 'gra', 'Gorai.013G104400' => 'gra', 'GSVIVG01000754001' => 'vvi', 'GSVIVG01000756001' => 'vvi', 'GSVIVG01010903001' => 'vvi', 'GSVIVG01017623001' => 'vvi', 'GSVIVG01018113001' => 'vvi', 'GSVIVG01018116001' => 'vvi', 'GSVIVG01018118001' => 'vvi', 'HanXRQChr03g0076211' => 'han', 'HanXRQChr03g0092431' => 'han', 'HanXRQChr03g0092441' => 'han', 'HanXRQChr03g0092591' => 'han', 'HanXRQChr03g0092671' => 'han', 'HanXRQChr03g0092681' => 'han', 'HanXRQChr03g0092691' => 'han', 'HanXRQChr03g0092701' => 'han', 'HanXRQChr03g0092721' => 'han', 'HanXRQChr03g0092731' => 'han', 'HanXRQChr04g0113681' => 'han', 'HanXRQChr10g0281371' => 'han', 'HanXRQChr11g0337141' => 'han', 'HanXRQChr13g0424521' => 'han', 'HanXRQChr13g0424531' => 'han', 'HanXRQChr13g0424541' => 'han', 'HanXRQChr16g0498221' => 'han', 'Haze_04377' => 'cav', 'Haze_11298' => 'cav', 'Haze_24547' => 'cav', 'Haze_24550' => 'cav', 'Haze_26587' => 'cav', 'Hma1.2p1_0650F.1_g195410' => 'hma', 'Hma1.2p1_0893F.1_g233470' => 'hma', 'HPP92_006508' => 'vpl', 'HPP92_024780' => 'vpl', 'Hund02688' => 'sun', 'Hund09380' => 'sun', 'Hund09381' => 'sun', 'Hund09832' => 'sun', 'Hund09833' => 'sun', 'Hund11351' => 'sun', 'Hund11513' => 'sun', 'Lalb_Chr06g0162591' => 'lal', 'Lalb_Chr06g0162601' => 'lal', 'Lalb_Chr06g0169321' => 'lal', 'Lalb_Chr09g0330951' => 'lal', 'Lalb_Chr16g0387631' => 'lal', 'Lalb_Chr21g0306241' => 'lal', 'Lalb_Chr25g0290051' => 'lal', 'Lalb_Chr25g0290061' => 'lal', 'Lalb_Chr25g0290071' => 'lal', 'Lj1g0003876' => 'lja', 'Lj1P1207T36' => 'lonja', 'Lj2C1156G12' => 'lonja', 'Lj3A793G39' => 'lonja', 'Lj3C580G2' => 'lonja', 'Lj3C780G2' => 'lonja', 'Lj3C780T4' => 'lonja', 'Lj3C793G9' => 'lonja', 'Lj4g0012960' => 'lja', 'Lj5g0021252' => 'lja', 'Lj5g0021484' => 'lja', 'Lj5g0024528' => 'lja', 'Lj6A399T12' => 'lonja', 'Lj6A656G65' => 'lonja', 'Lsat_1_v5_gn_3_125500' => 'lsa', 'Lsat_1_v5_gn_3_125540' => 'lsa', 'Lsat_1_v5_gn_5_72701' => 'lsa', 'Lsat_1_v5_gn_8_91560' => 'lsa', 'Lsat_1_v5_gn_9_9640' => 'lsa', 'Manes.01G200600' => 'mes', 'Manes.01G200700' => 'mes', 'Manes.03G168900' => 'mes', 'Manes.03G169000' => 'mes', 'Manes.05G085801' => 'mes', 'Manes.05G086200' => 'mes', 'Manes.15G036700' => 'mes', 'Manes.15G036900' => 'mes', 'Mapoly0004s0172' => 'mpo', 'Mapoly0023s0001' => 'mpo', 'Mapoly0142s0012' => 'mpo', 'MBI01_g32854_MAGBIO' => 'mbi', 'MBI11_g24427_MAGBIO' => 'mbi', 'MBI11_g47319_MAGBIO' => 'mbi', 'MCO01G433' => 'mco', 'MD00G1187800' => 'mdo', 'MD04G1226500' => 'mdo', 'MD05G1203900' => 'mdo', 'MD10G1191100' => 'mdo', 'MD12G1243500' => 'mdo', 'MD13G1207000' => 'mdo', 'MD13G1207100' => 'mdo', 'MD16G1208600' => 'mdo', 'Medtr1g050352' => 'mtr', 'Medtr1g070385' => 'mtr', 'Medtr1g070450' => 'mtr', 'Medtr1g075200' => 'mtr', 'Medtr1g075250' => 'mtr', 'Medtr1g075260' => 'mtr', 'Medtr1g475250' => 'mtr', 'Medtr4g075450' => 'mtr', 'Medtr7g096300' => 'mtr', 'Medtr8g105110' => 'mtr', 'MELO3C006470.2' => 'cme', 'MELO3C006471.2' => 'cme', 'MELO3C020772.2' => 'cme', 'MELO3C026780.2' => 'cme', 'MELO3C026781.2' => 'cme', 'Migut.D00390' => 'egut', 'Migut.G00435' => 'egut', 'Migut.G00436' => 'egut', 'Migut.G00718' => 'egut', 'MSTRG.21891' => 'ama', 'MSTRG.26910' => 'ama', 'MSTRG.4099' => 'ama', 'MSTRG.9925' => 'ama', 'Nitab4.5_0000165g0010' => 'nta', 'Nitab4.5_0000209g0180' => 'nta', 'Nitab4.5_0000244g0440' => 'nta', 'Nitab4.5_0000525g0220' => 'nta', 'Nitab4.5_0001597g0020' => 'nta', 'Nitab4.5_0001878g0040' => 'nta', 'Nitab4.5_0001878g0060' => 'nta', 'Nitab4.5_0002838g0100' => 'nta', 'Nitab4.5_0002838g0120' => 'nta', 'Nitab4.5_0004798g0030' => 'nta', 'Nitab4.5_0005420g0010' => 'nta', 'Nitab4.5_0005507g0010' => 'nta', 'Nitab4.5_0005574g0020' => 'nta', 'Nitab4.5_0005838g0010' => 'nta', 'Nitab4.5_0010580g0020' => 'nta', 'Nn1g02599' => 'nnu', 'Nn1g02608' => 'nnu', 'Nn3g17742' => 'nnu', 'Nn3g19534' => 'nnu', 'Nn3g19535' => 'nnu', 'Oeu008790.1' => 'oeu', 'Oeu008792.1' => 'oeu', 'Oeu032590.1' => 'oeu', 'Oeu035349.1' => 'oeu', 'Oeu049791.1' => 'oeu', 'Os01g0774500' => 'osa', 'Os03g0628800' => 'osa', 'Os03g0798600' => 'osa', 'Os05g0508800' => 'osa', 'Peaxi162Scf00036g02018' => 'pax', 'Peaxi162Scf00578g00032' => 'pax', 'Peaxi162Scf00578g00317' => 'pax', 'Peaxi162Scf00785g00114' => 'pax', 'Peaxi162Scf00813g00119' => 'pax', 'Peaxi162Scf00906g00227' => 'pax', 'PGR004G0875' => 'pgr', 'PGR004G2424' => 'pgr', 'PGR031G1239' => 'pgr', 'PGR031G2474' => 'pgr', 'PGR044G0423' => 'pgr', 'PGSC0003DMG400001128' => 'stu', 'PGSC0003DMG400007336' => 'stu', 'PGSC0003DMG400016318' => 'stu', 'PGSC0003DMG400016319' => 'stu', 'PGSC0003DMG400018074' => 'stu', 'Phvul.001G157700' => 'pvu', 'Phvul.002G148550' => 'pvu', 'Phvul.002G320200' => 'pvu', 'Phvul.003G089200' => 'pvu', 'Phvul.007G126000' => 'pvu', 'Phvul.007G126100' => 'pvu', 'Phvul.007G178000' => 'pvu', 'Phvul.007G178200' => 'pvu', 'Potri.002G043000' => 'ptr', 'Potri.002G043200' => 'ptr', 'Potri.003G123750' => 'ptr', 'Potri.005G055401' => 'ptr', 'Potri.005G219700' => 'ptr', 'Potri.005G220000' => 'ptr', 'Potri.008G161901' => 'ptr', 'Potri.008G162000' => 'ptr', 'Potri.008G162400' => 'ptr', 'Potri.010G076900' => 'ptr', 'Pp3c12_9180' => 'ppa', 'Pp3c13_19770' => 'ppa', 'Pp3c14_22950' => 'ppa', 'Pp3c16_12160' => 'ppa', 'Pp3c27_7820' => 'ppa', 'Pp3c2_3490' => 'ppa', 'Pp3c3_23700' => 'ppa', 'Pp3c3_36520' => 'ppa', 'Pp3c4_15250' => 'ppa', 'PRCOL_00007002' => 'pco', 'Prupe.1G030600' => 'ppe', 'Prupe.1G030700' => 'ppe', 'Prupe.6G345200' => 'ppe', 'Prupe.8G230300' => 'ppe', 'Prupe.8G230500' => 'ppe', 'Psat3g059600' => 'psa', 'Psat5g200920' => 'psa', 'Psat6g056440' => 'psa', 'Psat6g057360' => 'psa', 'Psat6g134120' => 'psa', 'Psat6g134160' => 'psa', 'Psat7g008640' => 'psa', 'Psat7g185240' => 'psa', 'PSO017G1330' => 'pso', 'PSO063G6097' => 'pso', 'PSO170G0835' => 'pso', 'PSO170G2499' => 'pso', 'PSO210G5058' => 'pso', 'PSO210G6154' => 'pso', 'PSO585G0031' => 'pso', 'PSO832G0264' => 'pso', 'PSO832G4288' => 'pso', 'QL03p027355' => 'qlo', 'QL03p027430' => 'qlo', 'QL04p081380' => 'qlo', 'QL06p015642' => 'qlo', 'QL06p015650' => 'qlo', 'QL06p015686' => 'qlo', 'QL12p042927' => 'qlo', 'QL93p1863_0035' => 'qlo', 'RcHm_v2.0_Chr3g0450581' => 'rch', 'RcHm_v2.0_Chr4g0390371' => 'rch', 'RcHm_v2.0_Chr4g0390381' => 'rch', 'RcHm_v2.0_Chr4g0390491' => 'rch', 'RcHm_v2.0_Chr4g0390501' => 'rch', 'RcHm_v2.0_Chr6g0289231' => 'rch', 'Rhsim04G0190400' => 'rsi', 'Rhsim04G0190500' => 'rsi', 'Rhsim04G0190600' => 'rsi', 'Rhsim13G0031400' => 'rsi', 'Rhsim13G0165600' => 'rsi', 'RhsimUnG0114600' => 'rsi', 'RhsimUnG0114700' => 'rsi', 'Sabra02G0034800' => 'sbr', 'Sabra02G0035100' => 'sbr', 'Sabra05G0168600' => 'sbr', 'Sabra05G0168800' => 'sbr', 'Sabra08G0123700' => 'sbr', 'Sabra10G0031900' => 'sbr', 'Sabra13G0039000' => 'sbr', 'SalBow2G0782' => 'sbo', 'SalBow2G1403' => 'sbo', 'SalBow4G0074' => 'sbo', 'SalBow4G2635' => 'sbo', 'SalBow5G3010' => 'sbo', 'Sc05g0000870' => 'sci', 'Sc05g0000890' => 'sci', 'Sc13g0005000' => 'sci', 'Sc13g0005030' => 'sci', 'Sc19g0003790' => 'sci', 'Sc19g0003800' => 'sci', 'Sed0003467' => 'sed', 'Sed0009355' => 'sed', 'Sed0009894' => 'sed', 'Sed0011972' => 'sed', 'Sed0021483' => 'sed', 'Sed0021750' => 'sed', 'Sed0026279' => 'sed', 'SEGI_05312' => 'sgi', 'SEGI_10112' => 'sgi', 'SEGI_15835' => 'sgi', 'SEGI_30386' => 'sgi', 'SEGI_34122' => 'sgi', 'SEGI_35063' => 'sgi', 'SGA_v2.0_scaffold101G29794' => 'sas', 'SGA_v2.0_scaffold1G00573' => 'sas', 'SGA_v2.0_scaffold79G25637' => 'sas', 'SGA_v2.0_scaffold88G27283' => 'sas', 'SGA_v2.0_scaffold88G27285' => 'sas', 'SGA_v2.0_scaffold88G27331' => 'sas', 'SHI09937' => 'shi', 'SMO119G0302' => 'smo', 'SMO137G0231' => 'smo', 'SMO367G1151' => 'smo', 'Solyc02g082000.3' => 'sly', 'Solyc06g031670.3' => 'sly', 'Solyc06g053810.3' => 'sly', 'Solyc07g025457.1' => 'sly', 'Solyc08g059740.1' => 'sly', 'Solyc08g059750.3' => 'sly', 'Solyc09g083370.3' => 'sly', 'Solyc12g038950.3' => 'sly', 'Sopen02g026630' => 'spe', 'Sopen06g018930' => 'spe', 'Sopen06g018940' => 'spe', 'Sopen08g009460' => 'spe', 'Sopen09g032290' => 'spe', 'Sp1g03080' => 'spa', 'Sp1g03090' => 'spa', 'Sp1g05480' => 'spa', 'Sp2g07860' => 'spa', 'Sp2g08430' => 'spa', 'Sp2g08440' => 'spa', 'Sp2g26200' => 'spa', 'Sp4g13170' => 'spa', 'Sp6g33840' => 'spa', 'SpUn1204_0010' => 'spa', 'TAR365G0908' => 'tar', 'TAR381G1270' => 'tar', 'TAR381G1651' => 'tar', 'TAR625G1131' => 'tar', 'TAR633G0962' => 'tar', 'TAR633G1729' => 'tar', 'TAR633G1864' => 'tar', 'TAR636G0221' => 'tar', 'TAR636G0314' => 'tar', 'TAR636G3202' => 'tar', 'THA.LOC104800805' => 'tha', 'THA.LOC104801096' => 'tha', 'THA.LOC104801555' => 'tha', 'THA.LOC104808491' => 'tha', 'THA.LOC104808595' => 'tha', 'THA.LOC104815985' => 'tha', 'THA.LOC104822250' => 'tha', 'THA.LOC104826071' => 'tha', 'Thecc.01G265200' => 'tca', 'Thecc.01G265300' => 'tca', 'Thecc.01G265700' => 'tca', 'Thecc.03G109100' => 'tca', 'Thecc.04G245900' => 'tca', 'Thecc.04G246000' => 'tca', 'Thhalv10003334m.g' => 'esa', 'Thhalv10005508m.g' => 'esa', 'Thhalv10005643m.g' => 'esa', 'Thhalv10007316m.g' => 'esa', 'Thhalv10009006m.g' => 'esa', 'Thhalv10009309m.g' => 'esa', 'Thhalv10014917m.g' => 'esa', 'Thhalv10014919m.g' => 'esa', 'Thhalv10015393m.g' => 'esa', 'Thhalv10016515m.g' => 'esa', 'Thhalv10029242m.g' => 'esa', 'TPR.G16654' => 'tpr', 'TPR.G20589' => 'tpr', 'TPR.G23029' => 'tpr', 'TPR.G27731' => 'tpr', 'TPR.G28889' => 'tpr', 'TPR.G28899' => 'tpr', 'TPR.G30846' => 'tpr', 'TPR.G5452' => 'tpr', 'TPR.G5713' => 'tpr', 'TPR.G9046' => 'tpr', 'TPR.G9061' => 'tpr', 'TWI09G1075' => 'twi', 'TWI12G0806' => 'twi', 'TWI18G0108' => 'twi', 'TWI53G1361' => 'twi', 'TWI73G0185' => 'twi', 'TWI73G0427' => 'twi', 'unitig_37.g12001' => 'ugi', 'unitig_747.g21660' => 'ugi', 'unitig_748.g7232' => 'ugi', 'unitig_748.g7315' => 'ugi', 'unitig_85.g27262' => 'ugi', 'unitig_92.g28220' => 'ugi', 'vmacro02632' => 'vma', 'vmacro08410' => 'vma', 'vmacro08411' => 'vma', 'vmacro15407' => 'vma', 'VMungo0251G3619' => 'vmu', 'VMungo0720G1204' => 'vmu', 'VMungo0720G1918' => 'vmu', 'VMungo0720G2387' => 'vmu', 'VMungo0720G2961' => 'vmu', 'VMungo1215G2154' => 'vmu', 'VMungo1383G2411' => 'vmu', 'Zm00001eb051130' => 'zma', 'Zm00001eb116830' => 'zma', 'Zm00001eb116850' => 'zma', 'Zm00001eb151740' => 'zma', 'Zm00001eb292360' => 'zma', 'Zm00001eb301640' => 'zma' ), 'gf_id' => 'HOM05D000856', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000856' ), 'data_identifier' => 'HOM05D000856', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000856', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p00010' => 'bna', 'A03p04160' => 'bna', 'A03p17160' => 'bna', 'A04p23370' => 'bna', 'A05p14860' => 'bna', 'A08p37020' => 'bna', 'A09p08050' => 'bna', 'A09p66800' => 'bna', 'A09p67940' => 'bna', 'A10p02680' => 'bna', 'A10p05320' => 'bna', 'Aa31LG1G20560' => 'aar', 'Aa31LG1G20610' => 'aar', 'Aa31LG1G7810' => 'aar', 'Aa31LG5G3590' => 'aar', 'Aa31LG5G6140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3819' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4683' => 'aag', 'Actinidia04480' => 'ach', 'Actinidia05466' => 'ach', 'Actinidia08445' => 'ach', 'Actinidia21170' => 'ach', 'Actinidia24812' => 'ach', 'Actinidia24951' => 'ach', 'Actinidia40088' => 'ach', 'Ah.02g111660' => 'amhyb', 'Ah.11g048900' => 'amhyb', 'Ah.11g049910' => 'amhyb', 'AL1G13870' => 'aly', 'AL1G13880' => 'aly', 'AL1G16760' => 'aly', 'AL390U10020' => 'aly', 'AL4G25520' => 'aly', 'AL6G19890' => 'aly', 'AL6G19900' => 'aly', 'AL6G19910' => 'aly', 'AL8G40100' => 'aly', 'Aqoxy2G03562' => 'aox', 'Aqoxy5G00316' => 'aox', 'Aqoxy5G00926' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1628KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1H403S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2FU6SJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.882I6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8YRY2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YN1SN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AF70II' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZA8L1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F916KL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHRD8H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KTZ8QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S22EMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8M29T' => 'arhy', 'AT1G04270' => 'ath', 'AT1G04280' => 'ath', 'AT1G06750' => 'ath', 'AT1G33850' => 'ath', 'AT2G30630' => 'ath', 'AT5G09490' => 'ath', 'AT5G09500' => 'ath', 'AT5G09510' => 'ath', 'AT5G43640' => 'ath', 'AT5G63070' => 'ath', 'ATR0605G315' => 'atr', 'Atru.chr11.175' => 'acertr', 'Atru.chr11.653' => 'acertr', 'Atru.chr3.1616' => 'acertr', 'Atru.chr4.2230' => 'acertr', 'Atru.chr4.2232' => 'acertr', 'Atru.chr5.1598' => 'acertr', 'Atru.chr5.1600' => 'acertr', 'Atru.chr5.2188' => 'acertr', 'AUR62008326' => 'cqu', 'AUR62011922' => 'cqu', 'AUR62011924' => 'cqu', 'AUR62021771' => 'cqu', 'AUR62032237' => 'cqu', 'AUR62032240' => 'cqu', 'BcaB01g05572' => 'bca', 'BcaB02g10337' => 'bca', 'BcaB04g19944' => 'bca', 'BcaB05g21548' => 'bca', 'BcaB05g21549' => 'bca', 'BcaB05g23227' => 'bca', 'BcaB06g26256' => 'bca', 'BcaB06g26257' => 'bca', 'BcaB06g28379' => 'bca', 'BcaC02g11159' => 'bca', 'BcaC03g13258' => 'bca', 'BcaC03g13259' => 'bca', 'BcaC05g24456' => 'bca', 'BcaC05g24457' => 'bca', 'BcaC07g36922' => 'bca', 'BcaC07g36923' => 'bca', 'BcaC07g42050' => 'bca', 'BcaC07g42176' => 'bca', 'BcaC07g42195' => 'bca', 'BcaC07g42196' => 'bca', 'BcaNung06674' => 'bca', 'BolC2t06351H' => 'bol', 'BolC2t06352H' => 'bol', 'BolC3t12993H' => 'bol', 'BolC4t23525H' => 'bol', 'BolC4t27475H' => 'bol', 'BolC5t29025H' => 'bol', 'BolC5t29026H' => 'bol', 'BolC8t46898H' => 'bol', 'BolC8t46899H' => 'bol', 'BolC8t52630H' => 'bol', 'BolC8t52765H' => 'bol', 'BolC9t53824H' => 'bol', 'BraA03t09760Z' => 'bra', 'BraA03t10990Z' => 'bra', 'BraA05t20413Z' => 'bra', 'BraA08t35602Z' => 'bra', 'BraA09t36458Z' => 'bra', 'BraA09t42018Z' => 'bra', 'BraA09t42129Z' => 'bra', 'BraA10t42536Z' => 'bra', 'BraA10t42537Z' => 'bra', 'C01p10690' => 'bna', 'C02p03890' => 'bna', 'C02p03900' => 'bna', 'C03p04620' => 'bna', 'C04p19870' => 'bna', 'C04p59670' => 'bna', 'C05p02460' => 'bna', 'C05p02470' => 'bna', 'C08p00980' => 'bna', 'C08p00990' => 'bna', 'C08p51030' => 'bna', 'C08p52360' => 'bna', 'C09p09120' => 'bna', 'CAN.G19.15' => 'can', 'CAN.G251.10' => 'can', 'CAN.G251.9' => 'can', 'CAN.G398.24' => 'can', 'CAN.G410.32' => 'can', 'CAN.G881.2' => 'can', 'CANSAT01G3025' => 'cansat', 'CANSAT78G1211' => 'cansat', 'CANSAT78G1218' => 'cansat', 'CANSAT78G1521' => 'cansat', 'CANSAT78G1670' => 'cansat', 'CARHR003600' => 'chi', 'CARHR003610' => 'chi', 'CARHR006290' => 'chi', 'CARHR006430' => 'chi', 'CARHR124110' => 'chi', 'CARHR203870' => 'chi', 'CARHR203880' => 'chi', 'CARHR203890' => 'chi', 'CARHR276880' => 'chi', 'Carub.0001s0346' => 'cru', 'Carub.0001s0347' => 'cru', 'Carub.0001s0607' => 'cru', 'Carub.0003s2768' => 'cru', 'Carub.0003s2769' => 'cru', 'Carub.0004s1178' => 'cru', 'Carub.0006s0806' => 'cru', 'Carub.0006s0807' => 'cru', 'Carub.0006s0808' => 'cru', 'Carub.0008s0501' => 'cru', 'Carub.0008s2379' => 'cru', 'Ca_08655_v3' => 'car', 'Ca_08922_v3' => 'car', 'Ca_08923_v3' => 'car', 'Ca_09119_v3' => 'car', 'Ca_09703_v3' => 'car', 'Ca_09705_v3' => 'car', 'Ca_09835_v3' => 'car', 'Ca_26403_v3' => 'car', 'Ca_30719_v3' => 'car', 'CBR_g17958' => 'cbr', 'CBR_g40516' => 'cbr', 'Cc00_g05350' => 'ccan', 'Cc01_g18690' => 'ccan', 'Cc03_g04830' => 'ccan', 'Cc03_g04850' => 'ccan', 'CDE02G4469' => 'cde', 'CDE06G0883' => 'cde', 'CDE06G1295' => 'cde', 'CDE06G1390' => 'cde', 'CDE07G0584' => 'cde', 'CDE07G1084' => 'cde', 'CDE08G1259' => 'cde', 'Cfa002341' => 'cfa', 'Cfa024337' => 'cfa', 'Ciclev10004749m.g' => 'ccl', 'Ciclev10006127m.g' => 'ccl', 'Ciclev10019720m.g' => 'ccl', 'Ciclev10022652m.g' => 'ccl', 'CiPaw.01G190400' => 'cil', 'CiPaw.01G190500' => 'cil', 'CiPaw.02G116400' => 'cil', 'CiPaw.02G116500' => 'cil', 'CiPaw.04G183000' => 'cil', 'CiPaw.04G183300' => 'cil', 'ClCG05G004610' => 'cla', 'ClCG05G004620' => 'cla', 'ClCG06G006730' => 'cla', 'ClCG06G006740' => 'cla', 'ClCG11G003690' => 'cla', 'COL.COLO4_08276' => 'col', 'COL.COLO4_08277' => 'col', 'COL.COLO4_15787' => 'col', 'COL.COLO4_15789' => 'col', 'Cpa.g.c44815' => 'cpa', 'Cpa.g.sc52.144' => 'cpa', 'Cpa.g.sc58.46' => 'cpa', 'Cpa.g.sc58.47' => 'cpa', 'Cre08.g360900' => 'cre', 'CsaV3_2G013030' => 'csa', 'CsaV3_2G013050' => 'csa', 'CsaV3_2G015620' => 'csa', 'CsaV3_3G012590' => 'csa', 'CsaV3_3G012600' => 'csa', 'CSS0001641' => 'camsi', 'CSS0008310' => 'camsi', 'CSS0013011' => 'camsi', 'CSS0017147' => 'camsi', 'CSS0022970' => 'camsi', 'CSS0025655' => 'camsi', 'CSS0028665' => 'camsi', 'CSS0029117' => 'camsi', 'CSS0032024' => 'camsi', 'CSS0039681' => 'camsi', 'CSS0046516' => 'camsi', 'CSS0050307' => 'camsi', 'DCAR_005871' => 'dca', 'DCAR_007342' => 'dca', 'DCAR_024228' => 'dca', 'DCAR_027277' => 'dca', 'DCAR_030718' => 'dca', 'Dinv20287' => 'din', 'Dinv22461' => 'din', 'Dinv22464' => 'din', 'Dinv29912' => 'din', 'Dinv29913' => 'din', 'Dinv34580' => 'din', 'Dinv34582' => 'din', 'Dinv44632' => 'din', 'Duzib052G0266' => 'dzi', 'Duzib133G0907' => 'dzi', 'Duzib133G1034' => 'dzi', 'Duzib138G0207' => 'dzi', 'Duzib138G0491' => 'dzi', 'Duzib151G0812' => 'dzi', 'Duzib151G1166' => 'dzi', 'Duzib168G0192' => 'dzi', 'Duzib211G0077' => 'dzi', 'Duzib212G0429' => 'dzi', 'Duzib212G0472' => 'dzi', 'ECA233G2617' => 'eca', 'ECA236G4188' => 'eca', 'ECA240G0936' => 'eca', 'ECA240G1129' => 'eca', 'ECA247G0623' => 'eca', 'EL10Ac5g10451' => 'bvu', 'EL10Ac5g10453' => 'bvu', 'EL10Ac5g10894' => 'bvu', 'Eucgr.H00192' => 'egr', 'Eucgr.H00193' => 'egr', 'Eucgr.H00194' => 'egr', 'Eucgr.J01562' => 'egr', 'Eucgr.K03301' => 'egr', 'FAN02G0632' => 'fan', 'FAN05G5378' => 'fan', 'FAN09G3247' => 'fan', 'FAN12G0435' => 'fan', 'FAN12G2426' => 'fan', 'FAN14G1707' => 'fan', 'FAN14G4725' => 'fan', 'FAN15G2071' => 'fan', 'FAN17G3065' => 'fan', 'FAN19G1376' => 'fan', 'FAN20G0354' => 'fan', 'FAN20G2429' => 'fan', 'FAN20G2658' => 'fan', 'FAN24G2343' => 'fan', 'FAN27G2362' => 'fan', 'FAN28G1765' => 'fan', 'FvH4_1g16020' => 'fve', 'FvH4_2g04890' => 'fve', 'FvH4_2g22270' => 'fve', 'FvH4_4g02630' => 'fve', 'FvH4_4g02640' => 'fve', 'FvH4_6g02650' => 'fve', 'Glyma.02G140600' => 'gma', 'Glyma.03G159900' => 'gma', 'Glyma.05G234800' => 'gma', 'Glyma.07G269600' => 'gma', 'Glyma.08G042300' => 'gma', 'Glyma.10G033500' => 'gma', 'Glyma.10G185200' => 'gma', 'Glyma.17G004300' => 'gma', 'Glyma.19G161900' => 'gma', 'Glyma.20G205100' => 'gma', 'Glyma.20G205200' => 'gma', 'Gohir.A01G139101' => 'ghi', 'Gohir.A02G035600' => 'ghi', 'Gohir.A02G117901' => 'ghi', 'Gohir.A07G210100' => 'ghi', 'Gohir.A07G210200' => 'ghi', 'Gohir.A08G061100' => 'ghi', 'Gohir.A09G223000' => 'ghi', 'Gohir.A09G223100' => 'ghi', 'Gohir.A10G113900' => 'ghi', 'Gohir.A10G114000' => 'ghi', 'Gohir.D02G042300' => 'ghi', 'Gohir.D07G216100' => 'ghi', 'Gohir.D07G216200' => 'ghi', 'Gohir.D08G070400' => 'ghi', 'Gohir.D09G225000' => 'ghi', 'Gohir.D09G225100' => 'ghi', 'Gohir.D10G152300' => 'ghi', 'Gohir.D10G153200' => 'ghi', 'Gohir.D11G133701' => 'ghi', 'Gorai.004G074100' => 'gra', 'Gorai.005G046800' => 'gra', 'Gorai.006G246500' => 'gra', 'Gorai.006G246600' => 'gra', 'Gorai.007G142900' => 'gra', 'Gorai.011G171000' => 'gra', 'Gorai.011G171100' => 'gra', 'Gorai.013G104300' => 'gra', 'Gorai.013G104400' => 'gra', 'GSVIVG01000754001' => 'vvi', 'GSVIVG01000756001' => 'vvi', 'GSVIVG01010903001' => 'vvi', 'GSVIVG01017623001' => 'vvi', 'GSVIVG01018113001' => 'vvi', 'GSVIVG01018116001' => 'vvi', 'GSVIVG01018118001' => 'vvi', 'HanXRQChr03g0076211' => 'han', 'HanXRQChr03g0092431' => 'han', 'HanXRQChr03g0092441' => 'han', 'HanXRQChr03g0092591' => 'han', 'HanXRQChr03g0092671' => 'han', 'HanXRQChr03g0092681' => 'han', 'HanXRQChr03g0092691' => 'han', 'HanXRQChr03g0092701' => 'han', 'HanXRQChr03g0092721' => 'han', 'HanXRQChr03g0092731' => 'han', 'HanXRQChr04g0113681' => 'han', 'HanXRQChr10g0281371' => 'han', 'HanXRQChr11g0337141' => 'han', 'HanXRQChr13g0424521' => 'han', 'HanXRQChr13g0424531' => 'han', 'HanXRQChr13g0424541' => 'han', 'HanXRQChr16g0498221' => 'han', 'Haze_04377' => 'cav', 'Haze_11298' => 'cav', 'Haze_24547' => 'cav', 'Haze_24550' => 'cav', 'Haze_26587' => 'cav', 'Hma1.2p1_0650F.1_g195410' => 'hma', 'Hma1.2p1_0893F.1_g233470' => 'hma', 'HPP92_006508' => 'vpl', 'HPP92_024780' => 'vpl', 'Hund02688' => 'sun', 'Hund09380' => 'sun', 'Hund09381' => 'sun', 'Hund09832' => 'sun', 'Hund09833' => 'sun', 'Hund11351' => 'sun', 'Hund11513' => 'sun', 'Lalb_Chr06g0162591' => 'lal', 'Lalb_Chr06g0162601' => 'lal', 'Lalb_Chr06g0169321' => 'lal', 'Lalb_Chr09g0330951' => 'lal', 'Lalb_Chr16g0387631' => 'lal', 'Lalb_Chr21g0306241' => 'lal', 'Lalb_Chr25g0290051' => 'lal', 'Lalb_Chr25g0290061' => 'lal', 'Lalb_Chr25g0290071' => 'lal', 'Lj1g0003876' => 'lja', 'Lj1P1207T36' => 'lonja', 'Lj2C1156G12' => 'lonja', 'Lj3A793G39' => 'lonja', 'Lj3C580G2' => 'lonja', 'Lj3C780G2' => 'lonja', 'Lj3C780T4' => 'lonja', 'Lj3C793G9' => 'lonja', 'Lj4g0012960' => 'lja', 'Lj5g0021252' => 'lja', 'Lj5g0021484' => 'lja', 'Lj5g0024528' => 'lja', 'Lj6A399T12' => 'lonja', 'Lj6A656G65' => 'lonja', 'Lsat_1_v5_gn_3_125500' => 'lsa', 'Lsat_1_v5_gn_3_125540' => 'lsa', 'Lsat_1_v5_gn_5_72701' => 'lsa', 'Lsat_1_v5_gn_8_91560' => 'lsa', 'Lsat_1_v5_gn_9_9640' => 'lsa', 'Manes.01G200600' => 'mes', 'Manes.01G200700' => 'mes', 'Manes.03G168900' => 'mes', 'Manes.03G169000' => 'mes', 'Manes.05G085801' => 'mes', 'Manes.05G086200' => 'mes', 'Manes.15G036700' => 'mes', 'Manes.15G036900' => 'mes', 'Mapoly0004s0172' => 'mpo', 'Mapoly0023s0001' => 'mpo', 'Mapoly0142s0012' => 'mpo', 'MBI01_g32854_MAGBIO' => 'mbi', 'MBI11_g24427_MAGBIO' => 'mbi', 'MBI11_g47319_MAGBIO' => 'mbi', 'MCO01G433' => 'mco', 'MD00G1187800' => 'mdo', 'MD04G1226500' => 'mdo', 'MD05G1203900' => 'mdo', 'MD10G1191100' => 'mdo', 'MD12G1243500' => 'mdo', 'MD13G1207000' => 'mdo', 'MD13G1207100' => 'mdo', 'MD16G1208600' => 'mdo', 'Medtr1g050352' => 'mtr', 'Medtr1g070385' => 'mtr', 'Medtr1g070450' => 'mtr', 'Medtr1g075200' => 'mtr', 'Medtr1g075250' => 'mtr', 'Medtr1g075260' => 'mtr', 'Medtr1g475250' => 'mtr', 'Medtr4g075450' => 'mtr', 'Medtr7g096300' => 'mtr', 'Medtr8g105110' => 'mtr', 'MELO3C006470.2' => 'cme', 'MELO3C006471.2' => 'cme', 'MELO3C020772.2' => 'cme', 'MELO3C026780.2' => 'cme', 'MELO3C026781.2' => 'cme', 'Migut.D00390' => 'egut', 'Migut.G00435' => 'egut', 'Migut.G00436' => 'egut', 'Migut.G00718' => 'egut', 'MSTRG.21891' => 'ama', 'MSTRG.26910' => 'ama', 'MSTRG.4099' => 'ama', 'MSTRG.9925' => 'ama', 'Nitab4.5_0000165g0010' => 'nta', 'Nitab4.5_0000209g0180' => 'nta', 'Nitab4.5_0000244g0440' => 'nta', 'Nitab4.5_0000525g0220' => 'nta', 'Nitab4.5_0001597g0020' => 'nta', 'Nitab4.5_0001878g0040' => 'nta', 'Nitab4.5_0001878g0060' => 'nta', 'Nitab4.5_0002838g0100' => 'nta', 'Nitab4.5_0002838g0120' => 'nta', 'Nitab4.5_0004798g0030' => 'nta', 'Nitab4.5_0005420g0010' => 'nta', 'Nitab4.5_0005507g0010' => 'nta', 'Nitab4.5_0005574g0020' => 'nta', 'Nitab4.5_0005838g0010' => 'nta', 'Nitab4.5_0010580g0020' => 'nta', 'Nn1g02599' => 'nnu', 'Nn1g02608' => 'nnu', 'Nn3g17742' => 'nnu', 'Nn3g19534' => 'nnu', 'Nn3g19535' => 'nnu', 'Oeu008790.1' => 'oeu', 'Oeu008792.1' => 'oeu', 'Oeu032590.1' => 'oeu', 'Oeu035349.1' => 'oeu', 'Oeu049791.1' => 'oeu', 'Os01g0774500' => 'osa', 'Os03g0628800' => 'osa', 'Os03g0798600' => 'osa', 'Os05g0508800' => 'osa', 'Peaxi162Scf00036g02018' => 'pax', 'Peaxi162Scf00578g00032' => 'pax', 'Peaxi162Scf00578g00317' => 'pax', 'Peaxi162Scf00785g00114' => 'pax', 'Peaxi162Scf00813g00119' => 'pax', 'Peaxi162Scf00906g00227' => 'pax', 'PGR004G0875' => 'pgr', 'PGR004G2424' => 'pgr', 'PGR031G1239' => 'pgr', 'PGR031G2474' => 'pgr', 'PGR044G0423' => 'pgr', 'PGSC0003DMG400001128' => 'stu', 'PGSC0003DMG400007336' => 'stu', 'PGSC0003DMG400016318' => 'stu', 'PGSC0003DMG400016319' => 'stu', 'PGSC0003DMG400018074' => 'stu', 'Phvul.001G157700' => 'pvu', 'Phvul.002G148550' => 'pvu', 'Phvul.002G320200' => 'pvu', 'Phvul.003G089200' => 'pvu', 'Phvul.007G126000' => 'pvu', 'Phvul.007G126100' => 'pvu', 'Phvul.007G178000' => 'pvu', 'Phvul.007G178200' => 'pvu', 'Potri.002G043000' => 'ptr', 'Potri.002G043200' => 'ptr', 'Potri.003G123750' => 'ptr', 'Potri.005G055401' => 'ptr', 'Potri.005G219700' => 'ptr', 'Potri.005G220000' => 'ptr', 'Potri.008G161901' => 'ptr', 'Potri.008G162000' => 'ptr', 'Potri.008G162400' => 'ptr', 'Potri.010G076900' => 'ptr', 'Pp3c12_9180' => 'ppa', 'Pp3c13_19770' => 'ppa', 'Pp3c14_22950' => 'ppa', 'Pp3c16_12160' => 'ppa', 'Pp3c27_7820' => 'ppa', 'Pp3c2_3490' => 'ppa', 'Pp3c3_23700' => 'ppa', 'Pp3c3_36520' => 'ppa', 'Pp3c4_15250' => 'ppa', 'PRCOL_00007002' => 'pco', 'Prupe.1G030600' => 'ppe', 'Prupe.1G030700' => 'ppe', 'Prupe.6G345200' => 'ppe', 'Prupe.8G230300' => 'ppe', 'Prupe.8G230500' => 'ppe', 'Psat3g059600' => 'psa', 'Psat5g200920' => 'psa', 'Psat6g056440' => 'psa', 'Psat6g057360' => 'psa', 'Psat6g134120' => 'psa', 'Psat6g134160' => 'psa', 'Psat7g008640' => 'psa', 'Psat7g185240' => 'psa', 'PSO017G1330' => 'pso', 'PSO063G6097' => 'pso', 'PSO170G0835' => 'pso', 'PSO170G2499' => 'pso', 'PSO210G5058' => 'pso', 'PSO210G6154' => 'pso', 'PSO585G0031' => 'pso', 'PSO832G0264' => 'pso', 'PSO832G4288' => 'pso', 'QL03p027355' => 'qlo', 'QL03p027430' => 'qlo', 'QL04p081380' => 'qlo', 'QL06p015642' => 'qlo', 'QL06p015650' => 'qlo', 'QL06p015686' => 'qlo', 'QL12p042927' => 'qlo', 'QL93p1863_0035' => 'qlo', 'RcHm_v2.0_Chr3g0450581' => 'rch', 'RcHm_v2.0_Chr4g0390371' => 'rch', 'RcHm_v2.0_Chr4g0390381' => 'rch', 'RcHm_v2.0_Chr4g0390491' => 'rch', 'RcHm_v2.0_Chr4g0390501' => 'rch', 'RcHm_v2.0_Chr6g0289231' => 'rch', 'Rhsim04G0190400' => 'rsi', 'Rhsim04G0190500' => 'rsi', 'Rhsim04G0190600' => 'rsi', 'Rhsim13G0031400' => 'rsi', 'Rhsim13G0165600' => 'rsi', 'RhsimUnG0114600' => 'rsi', 'RhsimUnG0114700' => 'rsi', 'Sabra02G0034800' => 'sbr', 'Sabra02G0035100' => 'sbr', 'Sabra05G0168600' => 'sbr', 'Sabra05G0168800' => 'sbr', 'Sabra08G0123700' => 'sbr', 'Sabra10G0031900' => 'sbr', 'Sabra13G0039000' => 'sbr', 'SalBow2G0782' => 'sbo', 'SalBow2G1403' => 'sbo', 'SalBow4G0074' => 'sbo', 'SalBow4G2635' => 'sbo', 'SalBow5G3010' => 'sbo', 'Sc05g0000870' => 'sci', 'Sc05g0000890' => 'sci', 'Sc13g0005000' => 'sci', 'Sc13g0005030' => 'sci', 'Sc19g0003790' => 'sci', 'Sc19g0003800' => 'sci', 'Sed0003467' => 'sed', 'Sed0009355' => 'sed', 'Sed0009894' => 'sed', 'Sed0011972' => 'sed', 'Sed0021483' => 'sed', 'Sed0021750' => 'sed', 'Sed0026279' => 'sed', 'SEGI_05312' => 'sgi', 'SEGI_10112' => 'sgi', 'SEGI_15835' => 'sgi', 'SEGI_30386' => 'sgi', 'SEGI_34122' => 'sgi', 'SEGI_35063' => 'sgi', 'SGA_v2.0_scaffold101G29794' => 'sas', 'SGA_v2.0_scaffold1G00573' => 'sas', 'SGA_v2.0_scaffold79G25637' => 'sas', 'SGA_v2.0_scaffold88G27283' => 'sas', 'SGA_v2.0_scaffold88G27285' => 'sas', 'SGA_v2.0_scaffold88G27331' => 'sas', 'SHI09937' => 'shi', 'SMO119G0302' => 'smo', 'SMO137G0231' => 'smo', 'SMO367G1151' => 'smo', 'Solyc02g082000.3' => 'sly', 'Solyc06g031670.3' => 'sly', 'Solyc06g053810.3' => 'sly', 'Solyc07g025457.1' => 'sly', 'Solyc08g059740.1' => 'sly', 'Solyc08g059750.3' => 'sly', 'Solyc09g083370.3' => 'sly', 'Solyc12g038950.3' => 'sly', 'Sopen02g026630' => 'spe', 'Sopen06g018930' => 'spe', 'Sopen06g018940' => 'spe', 'Sopen08g009460' => 'spe', 'Sopen09g032290' => 'spe', 'Sp1g03080' => 'spa', 'Sp1g03090' => 'spa', 'Sp1g05480' => 'spa', 'Sp2g07860' => 'spa', 'Sp2g08430' => 'spa', 'Sp2g08440' => 'spa', 'Sp2g26200' => 'spa', 'Sp4g13170' => 'spa', 'Sp6g33840' => 'spa', 'SpUn1204_0010' => 'spa', 'TAR365G0908' => 'tar', 'TAR381G1270' => 'tar', 'TAR381G1651' => 'tar', 'TAR625G1131' => 'tar', 'TAR633G0962' => 'tar', 'TAR633G1729' => 'tar', 'TAR633G1864' => 'tar', 'TAR636G0221' => 'tar', 'TAR636G0314' => 'tar', 'TAR636G3202' => 'tar', 'THA.LOC104800805' => 'tha', 'THA.LOC104801096' => 'tha', 'THA.LOC104801555' => 'tha', 'THA.LOC104808491' => 'tha', 'THA.LOC104808595' => 'tha', 'THA.LOC104815985' => 'tha', 'THA.LOC104822250' => 'tha', 'THA.LOC104826071' => 'tha', 'Thecc.01G265200' => 'tca', 'Thecc.01G265300' => 'tca', 'Thecc.01G265700' => 'tca', 'Thecc.03G109100' => 'tca', 'Thecc.04G245900' => 'tca', 'Thecc.04G246000' => 'tca', 'Thhalv10003334m.g' => 'esa', 'Thhalv10005508m.g' => 'esa', 'Thhalv10005643m.g' => 'esa', 'Thhalv10007316m.g' => 'esa', 'Thhalv10009006m.g' => 'esa', 'Thhalv10009309m.g' => 'esa', 'Thhalv10014917m.g' => 'esa', 'Thhalv10014919m.g' => 'esa', 'Thhalv10015393m.g' => 'esa', 'Thhalv10016515m.g' => 'esa', 'Thhalv10029242m.g' => 'esa', 'TPR.G16654' => 'tpr', 'TPR.G20589' => 'tpr', 'TPR.G23029' => 'tpr', 'TPR.G27731' => 'tpr', 'TPR.G28889' => 'tpr', 'TPR.G28899' => 'tpr', 'TPR.G30846' => 'tpr', 'TPR.G5452' => 'tpr', 'TPR.G5713' => 'tpr', 'TPR.G9046' => 'tpr', 'TPR.G9061' => 'tpr', 'TWI09G1075' => 'twi', 'TWI12G0806' => 'twi', 'TWI18G0108' => 'twi', 'TWI53G1361' => 'twi', 'TWI73G0185' => 'twi', 'TWI73G0427' => 'twi', 'unitig_37.g12001' => 'ugi', 'unitig_747.g21660' => 'ugi', 'unitig_748.g7232' => 'ugi', 'unitig_748.g7315' => 'ugi', 'unitig_85.g27262' => 'ugi', 'unitig_92.g28220' => 'ugi', 'vmacro02632' => 'vma', 'vmacro08410' => 'vma', 'vmacro08411' => 'vma', 'vmacro15407' => 'vma', 'VMungo0251G3619' => 'vmu', 'VMungo0720G1204' => 'vmu', 'VMungo0720G1918' => 'vmu', 'VMungo0720G2387' => 'vmu', 'VMungo0720G2961' => 'vmu', 'VMungo1215G2154' => 'vmu', 'VMungo1383G2411' => 'vmu', 'Zm00001eb051130' => 'zma', 'Zm00001eb116830' => 'zma', 'Zm00001eb116850' => 'zma', 'Zm00001eb151740' => 'zma', 'Zm00001eb292360' => 'zma', 'Zm00001eb301640' => 'zma' ) $gf_id = 'HOM05D000856' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000856' ) $data_identifier = 'HOM05D000856' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 13, 'ath' => (int) 10, 'atr' => (int) 1, 'acertr' => (int) 8, 'cqu' => (int) 6, 'bca' => (int) 21, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 11, 'car' => (int) 9, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 8, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 5, 'fan' => (int) 16, 'fve' => (int) 6, 'gma' => (int) 11, 'ghi' => (int) 19, 'gra' => (int) 9, 'vvi' => (int) 7, 'han' => (int) 17, 'cav' => (int) 5, 'hma' => (int) 2, 'vpl' => (int) 2, 'sun' => (int) 7, 'lal' => (int) 9, 'lja' => (int) 5, 'lonja' => (int) 9, 'lsa' => (int) 5, 'mes' => (int) 8, 'mpo' => (int) 3, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 10, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 15, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 9, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 9, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 6, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 5, 'spa' => (int) 10, 'tar' => (int) 10, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 11, 'tpr' => (int) 11, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 4, 'vmu' => (int) 7, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb301640' $species_info = array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ) $local_species = 'car' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000856', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p00010' => 'bna', 'A03p04160' => 'bna', 'A03p17160' => 'bna', 'A04p23370' => 'bna', 'A05p14860' => 'bna', 'A08p37020' => 'bna', 'A09p08050' => 'bna', 'A09p66800' => 'bna', 'A09p67940' => 'bna', 'A10p02680' => 'bna', 'A10p05320' => 'bna', 'Aa31LG1G20560' => 'aar', 'Aa31LG1G20610' => 'aar', 'Aa31LG1G7810' => 'aar', 'Aa31LG5G3590' => 'aar', 'Aa31LG5G6140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3819' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4683' => 'aag', 'Actinidia04480' => 'ach', 'Actinidia05466' => 'ach', 'Actinidia08445' => 'ach', 'Actinidia21170' => 'ach', 'Actinidia24812' => 'ach', 'Actinidia24951' => 'ach', 'Actinidia40088' => 'ach', 'Ah.02g111660' => 'amhyb', 'Ah.11g048900' => 'amhyb', 'Ah.11g049910' => 'amhyb', 'AL1G13870' => 'aly', 'AL1G13880' => 'aly', 'AL1G16760' => 'aly', 'AL390U10020' => 'aly', 'AL4G25520' => 'aly', 'AL6G19890' => 'aly', 'AL6G19900' => 'aly', 'AL6G19910' => 'aly', 'AL8G40100' => 'aly', 'Aqoxy2G03562' => 'aox', 'Aqoxy5G00316' => 'aox', 'Aqoxy5G00926' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1628KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1H403S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2FU6SJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.882I6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8YRY2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YN1SN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AF70II' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZA8L1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F916KL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHRD8H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KTZ8QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S22EMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8M29T' => 'arhy', 'AT1G04270' => 'ath', 'AT1G04280' => 'ath', 'AT1G06750' => 'ath', 'AT1G33850' => 'ath', 'AT2G30630' => 'ath', 'AT5G09490' => 'ath', 'AT5G09500' => 'ath', 'AT5G09510' => 'ath', 'AT5G43640' => 'ath', 'AT5G63070' => 'ath', 'ATR0605G315' => 'atr', 'Atru.chr11.175' => 'acertr', 'Atru.chr11.653' => 'acertr', 'Atru.chr3.1616' => 'acertr', 'Atru.chr4.2230' => 'acertr', 'Atru.chr4.2232' => 'acertr', 'Atru.chr5.1598' => 'acertr', 'Atru.chr5.1600' => 'acertr', 'Atru.chr5.2188' => 'acertr', 'AUR62008326' => 'cqu', 'AUR62011922' => 'cqu', 'AUR62011924' => 'cqu', 'AUR62021771' => 'cqu', 'AUR62032237' => 'cqu', 'AUR62032240' => 'cqu', 'BcaB01g05572' => 'bca', 'BcaB02g10337' => 'bca', 'BcaB04g19944' => 'bca', 'BcaB05g21548' => 'bca', 'BcaB05g21549' => 'bca', 'BcaB05g23227' => 'bca', 'BcaB06g26256' => 'bca', 'BcaB06g26257' => 'bca', 'BcaB06g28379' => 'bca', 'BcaC02g11159' => 'bca', 'BcaC03g13258' => 'bca', 'BcaC03g13259' => 'bca', 'BcaC05g24456' => 'bca', 'BcaC05g24457' => 'bca', 'BcaC07g36922' => 'bca', 'BcaC07g36923' => 'bca', 'BcaC07g42050' => 'bca', 'BcaC07g42176' => 'bca', 'BcaC07g42195' => 'bca', 'BcaC07g42196' => 'bca', 'BcaNung06674' => 'bca', 'BolC2t06351H' => 'bol', 'BolC2t06352H' => 'bol', 'BolC3t12993H' => 'bol', 'BolC4t23525H' => 'bol', 'BolC4t27475H' => 'bol', 'BolC5t29025H' => 'bol', 'BolC5t29026H' => 'bol', 'BolC8t46898H' => 'bol', 'BolC8t46899H' => 'bol', 'BolC8t52630H' => 'bol', 'BolC8t52765H' => 'bol', 'BolC9t53824H' => 'bol', 'BraA03t09760Z' => 'bra', 'BraA03t10990Z' => 'bra', 'BraA05t20413Z' => 'bra', 'BraA08t35602Z' => 'bra', 'BraA09t36458Z' => 'bra', 'BraA09t42018Z' => 'bra', 'BraA09t42129Z' => 'bra', 'BraA10t42536Z' => 'bra', 'BraA10t42537Z' => 'bra', 'C01p10690' => 'bna', 'C02p03890' => 'bna', 'C02p03900' => 'bna', 'C03p04620' => 'bna', 'C04p19870' => 'bna', 'C04p59670' => 'bna', 'C05p02460' => 'bna', 'C05p02470' => 'bna', 'C08p00980' => 'bna', 'C08p00990' => 'bna', 'C08p51030' => 'bna', 'C08p52360' => 'bna', 'C09p09120' => 'bna', 'CAN.G19.15' => 'can', 'CAN.G251.10' => 'can', 'CAN.G251.9' => 'can', 'CAN.G398.24' => 'can', 'CAN.G410.32' => 'can', 'CAN.G881.2' => 'can', 'CANSAT01G3025' => 'cansat', 'CANSAT78G1211' => 'cansat', 'CANSAT78G1218' => 'cansat', 'CANSAT78G1521' => 'cansat', 'CANSAT78G1670' => 'cansat', 'CARHR003600' => 'chi', 'CARHR003610' => 'chi', 'CARHR006290' => 'chi', 'CARHR006430' => 'chi', 'CARHR124110' => 'chi', 'CARHR203870' => 'chi', 'CARHR203880' => 'chi', 'CARHR203890' => 'chi', 'CARHR276880' => 'chi', 'Carub.0001s0346' => 'cru', 'Carub.0001s0347' => 'cru', 'Carub.0001s0607' => 'cru', 'Carub.0003s2768' => 'cru', 'Carub.0003s2769' => 'cru', 'Carub.0004s1178' => 'cru', 'Carub.0006s0806' => 'cru', 'Carub.0006s0807' => 'cru', 'Carub.0006s0808' => 'cru', 'Carub.0008s0501' => 'cru', 'Carub.0008s2379' => 'cru', 'Ca_08655_v3' => 'car', 'Ca_08922_v3' => 'car', 'Ca_08923_v3' => 'car', 'Ca_09119_v3' => 'car', 'Ca_09703_v3' => 'car', 'Ca_09705_v3' => 'car', 'Ca_09835_v3' => 'car', 'Ca_26403_v3' => 'car', 'Ca_30719_v3' => 'car', 'CBR_g17958' => 'cbr', 'CBR_g40516' => 'cbr', 'Cc00_g05350' => 'ccan', 'Cc01_g18690' => 'ccan', 'Cc03_g04830' => 'ccan', 'Cc03_g04850' => 'ccan', 'CDE02G4469' => 'cde', 'CDE06G0883' => 'cde', 'CDE06G1295' => 'cde', 'CDE06G1390' => 'cde', 'CDE07G0584' => 'cde', 'CDE07G1084' => 'cde', 'CDE08G1259' => 'cde', 'Cfa002341' => 'cfa', 'Cfa024337' => 'cfa', 'Ciclev10004749m.g' => 'ccl', 'Ciclev10006127m.g' => 'ccl', 'Ciclev10019720m.g' => 'ccl', 'Ciclev10022652m.g' => 'ccl', 'CiPaw.01G190400' => 'cil', 'CiPaw.01G190500' => 'cil', 'CiPaw.02G116400' => 'cil', 'CiPaw.02G116500' => 'cil', 'CiPaw.04G183000' => 'cil', 'CiPaw.04G183300' => 'cil', 'ClCG05G004610' => 'cla', 'ClCG05G004620' => 'cla', 'ClCG06G006730' => 'cla', 'ClCG06G006740' => 'cla', 'ClCG11G003690' => 'cla', 'COL.COLO4_08276' => 'col', 'COL.COLO4_08277' => 'col', 'COL.COLO4_15787' => 'col', 'COL.COLO4_15789' => 'col', 'Cpa.g.c44815' => 'cpa', 'Cpa.g.sc52.144' => 'cpa', 'Cpa.g.sc58.46' => 'cpa', 'Cpa.g.sc58.47' => 'cpa', 'Cre08.g360900' => 'cre', 'CsaV3_2G013030' => 'csa', 'CsaV3_2G013050' => 'csa', 'CsaV3_2G015620' => 'csa', 'CsaV3_3G012590' => 'csa', 'CsaV3_3G012600' => 'csa', 'CSS0001641' => 'camsi', 'CSS0008310' => 'camsi', 'CSS0013011' => 'camsi', 'CSS0017147' => 'camsi', 'CSS0022970' => 'camsi', 'CSS0025655' => 'camsi', 'CSS0028665' => 'camsi', 'CSS0029117' => 'camsi', 'CSS0032024' => 'camsi', 'CSS0039681' => 'camsi', 'CSS0046516' => 'camsi', 'CSS0050307' => 'camsi', 'DCAR_005871' => 'dca', 'DCAR_007342' => 'dca', 'DCAR_024228' => 'dca', 'DCAR_027277' => 'dca', 'DCAR_030718' => 'dca', 'Dinv20287' => 'din', 'Dinv22461' => 'din', 'Dinv22464' => 'din', 'Dinv29912' => 'din', 'Dinv29913' => 'din', 'Dinv34580' => 'din', 'Dinv34582' => 'din', 'Dinv44632' => 'din', 'Duzib052G0266' => 'dzi', 'Duzib133G0907' => 'dzi', 'Duzib133G1034' => 'dzi', 'Duzib138G0207' => 'dzi', 'Duzib138G0491' => 'dzi', 'Duzib151G0812' => 'dzi', 'Duzib151G1166' => 'dzi', 'Duzib168G0192' => 'dzi', 'Duzib211G0077' => 'dzi', 'Duzib212G0429' => 'dzi', 'Duzib212G0472' => 'dzi', 'ECA233G2617' => 'eca', 'ECA236G4188' => 'eca', 'ECA240G0936' => 'eca', 'ECA240G1129' => 'eca', 'ECA247G0623' => 'eca', 'EL10Ac5g10451' => 'bvu', 'EL10Ac5g10453' => 'bvu', 'EL10Ac5g10894' => 'bvu', 'Eucgr.H00192' => 'egr', 'Eucgr.H00193' => 'egr', 'Eucgr.H00194' => 'egr', 'Eucgr.J01562' => 'egr', 'Eucgr.K03301' => 'egr', 'FAN02G0632' => 'fan', 'FAN05G5378' => 'fan', 'FAN09G3247' => 'fan', 'FAN12G0435' => 'fan', 'FAN12G2426' => 'fan', 'FAN14G1707' => 'fan', 'FAN14G4725' => 'fan', 'FAN15G2071' => 'fan', 'FAN17G3065' => 'fan', 'FAN19G1376' => 'fan', 'FAN20G0354' => 'fan', 'FAN20G2429' => 'fan', 'FAN20G2658' => 'fan', 'FAN24G2343' => 'fan', 'FAN27G2362' => 'fan', 'FAN28G1765' => 'fan', 'FvH4_1g16020' => 'fve', 'FvH4_2g04890' => 'fve', 'FvH4_2g22270' => 'fve', 'FvH4_4g02630' => 'fve', 'FvH4_4g02640' => 'fve', 'FvH4_6g02650' => 'fve', 'Glyma.02G140600' => 'gma', 'Glyma.03G159900' => 'gma', 'Glyma.05G234800' => 'gma', 'Glyma.07G269600' => 'gma', 'Glyma.08G042300' => 'gma', 'Glyma.10G033500' => 'gma', 'Glyma.10G185200' => 'gma', 'Glyma.17G004300' => 'gma', 'Glyma.19G161900' => 'gma', 'Glyma.20G205100' => 'gma', 'Glyma.20G205200' => 'gma', 'Gohir.A01G139101' => 'ghi', 'Gohir.A02G035600' => 'ghi', 'Gohir.A02G117901' => 'ghi', 'Gohir.A07G210100' => 'ghi', 'Gohir.A07G210200' => 'ghi', 'Gohir.A08G061100' => 'ghi', 'Gohir.A09G223000' => 'ghi', 'Gohir.A09G223100' => 'ghi', 'Gohir.A10G113900' => 'ghi', 'Gohir.A10G114000' => 'ghi', 'Gohir.D02G042300' => 'ghi', 'Gohir.D07G216100' => 'ghi', 'Gohir.D07G216200' => 'ghi', 'Gohir.D08G070400' => 'ghi', 'Gohir.D09G225000' => 'ghi', 'Gohir.D09G225100' => 'ghi', 'Gohir.D10G152300' => 'ghi', 'Gohir.D10G153200' => 'ghi', 'Gohir.D11G133701' => 'ghi', 'Gorai.004G074100' => 'gra', 'Gorai.005G046800' => 'gra', 'Gorai.006G246500' => 'gra', 'Gorai.006G246600' => 'gra', 'Gorai.007G142900' => 'gra', 'Gorai.011G171000' => 'gra', 'Gorai.011G171100' => 'gra', 'Gorai.013G104300' => 'gra', 'Gorai.013G104400' => 'gra', 'GSVIVG01000754001' => 'vvi', 'GSVIVG01000756001' => 'vvi', 'GSVIVG01010903001' => 'vvi', 'GSVIVG01017623001' => 'vvi', 'GSVIVG01018113001' => 'vvi', 'GSVIVG01018116001' => 'vvi', 'GSVIVG01018118001' => 'vvi', 'HanXRQChr03g0076211' => 'han', 'HanXRQChr03g0092431' => 'han', 'HanXRQChr03g0092441' => 'han', 'HanXRQChr03g0092591' => 'han', 'HanXRQChr03g0092671' => 'han', 'HanXRQChr03g0092681' => 'han', 'HanXRQChr03g0092691' => 'han', 'HanXRQChr03g0092701' => 'han', 'HanXRQChr03g0092721' => 'han', 'HanXRQChr03g0092731' => 'han', 'HanXRQChr04g0113681' => 'han', 'HanXRQChr10g0281371' => 'han', 'HanXRQChr11g0337141' => 'han', 'HanXRQChr13g0424521' => 'han', 'HanXRQChr13g0424531' => 'han', 'HanXRQChr13g0424541' => 'han', 'HanXRQChr16g0498221' => 'han', 'Haze_04377' => 'cav', 'Haze_11298' => 'cav', 'Haze_24547' => 'cav', 'Haze_24550' => 'cav', 'Haze_26587' => 'cav', 'Hma1.2p1_0650F.1_g195410' => 'hma', 'Hma1.2p1_0893F.1_g233470' => 'hma', 'HPP92_006508' => 'vpl', 'HPP92_024780' => 'vpl', 'Hund02688' => 'sun', 'Hund09380' => 'sun', 'Hund09381' => 'sun', 'Hund09832' => 'sun', 'Hund09833' => 'sun', 'Hund11351' => 'sun', 'Hund11513' => 'sun', 'Lalb_Chr06g0162591' => 'lal', 'Lalb_Chr06g0162601' => 'lal', 'Lalb_Chr06g0169321' => 'lal', 'Lalb_Chr09g0330951' => 'lal', 'Lalb_Chr16g0387631' => 'lal', 'Lalb_Chr21g0306241' => 'lal', 'Lalb_Chr25g0290051' => 'lal', 'Lalb_Chr25g0290061' => 'lal', 'Lalb_Chr25g0290071' => 'lal', 'Lj1g0003876' => 'lja', 'Lj1P1207T36' => 'lonja', 'Lj2C1156G12' => 'lonja', 'Lj3A793G39' => 'lonja', 'Lj3C580G2' => 'lonja', 'Lj3C780G2' => 'lonja', 'Lj3C780T4' => 'lonja', 'Lj3C793G9' => 'lonja', 'Lj4g0012960' => 'lja', 'Lj5g0021252' => 'lja', 'Lj5g0021484' => 'lja', 'Lj5g0024528' => 'lja', 'Lj6A399T12' => 'lonja', 'Lj6A656G65' => 'lonja', 'Lsat_1_v5_gn_3_125500' => 'lsa', 'Lsat_1_v5_gn_3_125540' => 'lsa', 'Lsat_1_v5_gn_5_72701' => 'lsa', 'Lsat_1_v5_gn_8_91560' => 'lsa', 'Lsat_1_v5_gn_9_9640' => 'lsa', 'Manes.01G200600' => 'mes', 'Manes.01G200700' => 'mes', 'Manes.03G168900' => 'mes', 'Manes.03G169000' => 'mes', 'Manes.05G085801' => 'mes', 'Manes.05G086200' => 'mes', 'Manes.15G036700' => 'mes', 'Manes.15G036900' => 'mes', 'Mapoly0004s0172' => 'mpo', 'Mapoly0023s0001' => 'mpo', 'Mapoly0142s0012' => 'mpo', 'MBI01_g32854_MAGBIO' => 'mbi', 'MBI11_g24427_MAGBIO' => 'mbi', 'MBI11_g47319_MAGBIO' => 'mbi', 'MCO01G433' => 'mco', 'MD00G1187800' => 'mdo', 'MD04G1226500' => 'mdo', 'MD05G1203900' => 'mdo', 'MD10G1191100' => 'mdo', 'MD12G1243500' => 'mdo', 'MD13G1207000' => 'mdo', 'MD13G1207100' => 'mdo', 'MD16G1208600' => 'mdo', 'Medtr1g050352' => 'mtr', 'Medtr1g070385' => 'mtr', 'Medtr1g070450' => 'mtr', 'Medtr1g075200' => 'mtr', 'Medtr1g075250' => 'mtr', 'Medtr1g075260' => 'mtr', 'Medtr1g475250' => 'mtr', 'Medtr4g075450' => 'mtr', 'Medtr7g096300' => 'mtr', 'Medtr8g105110' => 'mtr', 'MELO3C006470.2' => 'cme', 'MELO3C006471.2' => 'cme', 'MELO3C020772.2' => 'cme', 'MELO3C026780.2' => 'cme', 'MELO3C026781.2' => 'cme', 'Migut.D00390' => 'egut', 'Migut.G00435' => 'egut', 'Migut.G00436' => 'egut', 'Migut.G00718' => 'egut', 'MSTRG.21891' => 'ama', 'MSTRG.26910' => 'ama', 'MSTRG.4099' => 'ama', 'MSTRG.9925' => 'ama', 'Nitab4.5_0000165g0010' => 'nta', 'Nitab4.5_0000209g0180' => 'nta', 'Nitab4.5_0000244g0440' => 'nta', 'Nitab4.5_0000525g0220' => 'nta', 'Nitab4.5_0001597g0020' => 'nta', 'Nitab4.5_0001878g0040' => 'nta', 'Nitab4.5_0001878g0060' => 'nta', 'Nitab4.5_0002838g0100' => 'nta', 'Nitab4.5_0002838g0120' => 'nta', 'Nitab4.5_0004798g0030' => 'nta', 'Nitab4.5_0005420g0010' => 'nta', 'Nitab4.5_0005507g0010' => 'nta', 'Nitab4.5_0005574g0020' => 'nta', 'Nitab4.5_0005838g0010' => 'nta', 'Nitab4.5_0010580g0020' => 'nta', 'Nn1g02599' => 'nnu', 'Nn1g02608' => 'nnu', 'Nn3g17742' => 'nnu', 'Nn3g19534' => 'nnu', 'Nn3g19535' => 'nnu', 'Oeu008790.1' => 'oeu', 'Oeu008792.1' => 'oeu', 'Oeu032590.1' => 'oeu', 'Oeu035349.1' => 'oeu', 'Oeu049791.1' => 'oeu', 'Os01g0774500' => 'osa', 'Os03g0628800' => 'osa', 'Os03g0798600' => 'osa', 'Os05g0508800' => 'osa', 'Peaxi162Scf00036g02018' => 'pax', 'Peaxi162Scf00578g00032' => 'pax', 'Peaxi162Scf00578g00317' => 'pax', 'Peaxi162Scf00785g00114' => 'pax', 'Peaxi162Scf00813g00119' => 'pax', 'Peaxi162Scf00906g00227' => 'pax', 'PGR004G0875' => 'pgr', 'PGR004G2424' => 'pgr', 'PGR031G1239' => 'pgr', 'PGR031G2474' => 'pgr', 'PGR044G0423' => 'pgr', 'PGSC0003DMG400001128' => 'stu', 'PGSC0003DMG400007336' => 'stu', 'PGSC0003DMG400016318' => 'stu', 'PGSC0003DMG400016319' => 'stu', 'PGSC0003DMG400018074' => 'stu', 'Phvul.001G157700' => 'pvu', 'Phvul.002G148550' => 'pvu', 'Phvul.002G320200' => 'pvu', 'Phvul.003G089200' => 'pvu', 'Phvul.007G126000' => 'pvu', 'Phvul.007G126100' => 'pvu', 'Phvul.007G178000' => 'pvu', 'Phvul.007G178200' => 'pvu', 'Potri.002G043000' => 'ptr', 'Potri.002G043200' => 'ptr', 'Potri.003G123750' => 'ptr', 'Potri.005G055401' => 'ptr', 'Potri.005G219700' => 'ptr', 'Potri.005G220000' => 'ptr', 'Potri.008G161901' => 'ptr', 'Potri.008G162000' => 'ptr', 'Potri.008G162400' => 'ptr', 'Potri.010G076900' => 'ptr', 'Pp3c12_9180' => 'ppa', 'Pp3c13_19770' => 'ppa', 'Pp3c14_22950' => 'ppa', 'Pp3c16_12160' => 'ppa', 'Pp3c27_7820' => 'ppa', 'Pp3c2_3490' => 'ppa', 'Pp3c3_23700' => 'ppa', 'Pp3c3_36520' => 'ppa', 'Pp3c4_15250' => 'ppa', 'PRCOL_00007002' => 'pco', 'Prupe.1G030600' => 'ppe', 'Prupe.1G030700' => 'ppe', 'Prupe.6G345200' => 'ppe', 'Prupe.8G230300' => 'ppe', 'Prupe.8G230500' => 'ppe', 'Psat3g059600' => 'psa', 'Psat5g200920' => 'psa', 'Psat6g056440' => 'psa', 'Psat6g057360' => 'psa', 'Psat6g134120' => 'psa', 'Psat6g134160' => 'psa', 'Psat7g008640' => 'psa', 'Psat7g185240' => 'psa', 'PSO017G1330' => 'pso', 'PSO063G6097' => 'pso', 'PSO170G0835' => 'pso', 'PSO170G2499' => 'pso', 'PSO210G5058' => 'pso', 'PSO210G6154' => 'pso', 'PSO585G0031' => 'pso', 'PSO832G0264' => 'pso', 'PSO832G4288' => 'pso', 'QL03p027355' => 'qlo', 'QL03p027430' => 'qlo', 'QL04p081380' => 'qlo', 'QL06p015642' => 'qlo', 'QL06p015650' => 'qlo', 'QL06p015686' => 'qlo', 'QL12p042927' => 'qlo', 'QL93p1863_0035' => 'qlo', 'RcHm_v2.0_Chr3g0450581' => 'rch', 'RcHm_v2.0_Chr4g0390371' => 'rch', 'RcHm_v2.0_Chr4g0390381' => 'rch', 'RcHm_v2.0_Chr4g0390491' => 'rch', 'RcHm_v2.0_Chr4g0390501' => 'rch', 'RcHm_v2.0_Chr6g0289231' => 'rch', 'Rhsim04G0190400' => 'rsi', 'Rhsim04G0190500' => 'rsi', 'Rhsim04G0190600' => 'rsi', 'Rhsim13G0031400' => 'rsi', 'Rhsim13G0165600' => 'rsi', 'RhsimUnG0114600' => 'rsi', 'RhsimUnG0114700' => 'rsi', 'Sabra02G0034800' => 'sbr', 'Sabra02G0035100' => 'sbr', 'Sabra05G0168600' => 'sbr', 'Sabra05G0168800' => 'sbr', 'Sabra08G0123700' => 'sbr', 'Sabra10G0031900' => 'sbr', 'Sabra13G0039000' => 'sbr', 'SalBow2G0782' => 'sbo', 'SalBow2G1403' => 'sbo', 'SalBow4G0074' => 'sbo', 'SalBow4G2635' => 'sbo', 'SalBow5G3010' => 'sbo', 'Sc05g0000870' => 'sci', 'Sc05g0000890' => 'sci', 'Sc13g0005000' => 'sci', 'Sc13g0005030' => 'sci', 'Sc19g0003790' => 'sci', 'Sc19g0003800' => 'sci', 'Sed0003467' => 'sed', 'Sed0009355' => 'sed', 'Sed0009894' => 'sed', 'Sed0011972' => 'sed', 'Sed0021483' => 'sed', 'Sed0021750' => 'sed', 'Sed0026279' => 'sed', 'SEGI_05312' => 'sgi', 'SEGI_10112' => 'sgi', 'SEGI_15835' => 'sgi', 'SEGI_30386' => 'sgi', 'SEGI_34122' => 'sgi', 'SEGI_35063' => 'sgi', 'SGA_v2.0_scaffold101G29794' => 'sas', 'SGA_v2.0_scaffold1G00573' => 'sas', 'SGA_v2.0_scaffold79G25637' => 'sas', 'SGA_v2.0_scaffold88G27283' => 'sas', 'SGA_v2.0_scaffold88G27285' => 'sas', 'SGA_v2.0_scaffold88G27331' => 'sas', 'SHI09937' => 'shi', 'SMO119G0302' => 'smo', 'SMO137G0231' => 'smo', 'SMO367G1151' => 'smo', 'Solyc02g082000.3' => 'sly', 'Solyc06g031670.3' => 'sly', 'Solyc06g053810.3' => 'sly', 'Solyc07g025457.1' => 'sly', 'Solyc08g059740.1' => 'sly', 'Solyc08g059750.3' => 'sly', 'Solyc09g083370.3' => 'sly', 'Solyc12g038950.3' => 'sly', 'Sopen02g026630' => 'spe', 'Sopen06g018930' => 'spe', 'Sopen06g018940' => 'spe', 'Sopen08g009460' => 'spe', 'Sopen09g032290' => 'spe', 'Sp1g03080' => 'spa', 'Sp1g03090' => 'spa', 'Sp1g05480' => 'spa', 'Sp2g07860' => 'spa', 'Sp2g08430' => 'spa', 'Sp2g08440' => 'spa', 'Sp2g26200' => 'spa', 'Sp4g13170' => 'spa', 'Sp6g33840' => 'spa', 'SpUn1204_0010' => 'spa', 'TAR365G0908' => 'tar', 'TAR381G1270' => 'tar', 'TAR381G1651' => 'tar', 'TAR625G1131' => 'tar', 'TAR633G0962' => 'tar', 'TAR633G1729' => 'tar', 'TAR633G1864' => 'tar', 'TAR636G0221' => 'tar', 'TAR636G0314' => 'tar', 'TAR636G3202' => 'tar', 'THA.LOC104800805' => 'tha', 'THA.LOC104801096' => 'tha', 'THA.LOC104801555' => 'tha', 'THA.LOC104808491' => 'tha', 'THA.LOC104808595' => 'tha', 'THA.LOC104815985' => 'tha', 'THA.LOC104822250' => 'tha', 'THA.LOC104826071' => 'tha', 'Thecc.01G265200' => 'tca', 'Thecc.01G265300' => 'tca', 'Thecc.01G265700' => 'tca', 'Thecc.03G109100' => 'tca', 'Thecc.04G245900' => 'tca', 'Thecc.04G246000' => 'tca', 'Thhalv10003334m.g' => 'esa', 'Thhalv10005508m.g' => 'esa', 'Thhalv10005643m.g' => 'esa', 'Thhalv10007316m.g' => 'esa', 'Thhalv10009006m.g' => 'esa', 'Thhalv10009309m.g' => 'esa', 'Thhalv10014917m.g' => 'esa', 'Thhalv10014919m.g' => 'esa', 'Thhalv10015393m.g' => 'esa', 'Thhalv10016515m.g' => 'esa', 'Thhalv10029242m.g' => 'esa', 'TPR.G16654' => 'tpr', 'TPR.G20589' => 'tpr', 'TPR.G23029' => 'tpr', 'TPR.G27731' => 'tpr', 'TPR.G28889' => 'tpr', 'TPR.G28899' => 'tpr', 'TPR.G30846' => 'tpr', 'TPR.G5452' => 'tpr', 'TPR.G5713' => 'tpr', 'TPR.G9046' => 'tpr', 'TPR.G9061' => 'tpr', 'TWI09G1075' => 'twi', 'TWI12G0806' => 'twi', 'TWI18G0108' => 'twi', 'TWI53G1361' => 'twi', 'TWI73G0185' => 'twi', 'TWI73G0427' => 'twi', 'unitig_37.g12001' => 'ugi', 'unitig_747.g21660' => 'ugi', 'unitig_748.g7232' => 'ugi', 'unitig_748.g7315' => 'ugi', 'unitig_85.g27262' => 'ugi', 'unitig_92.g28220' => 'ugi', 'vmacro02632' => 'vma', 'vmacro08410' => 'vma', 'vmacro08411' => 'vma', 'vmacro15407' => 'vma', 'VMungo0251G3619' => 'vmu', 'VMungo0720G1204' => 'vmu', 'VMungo0720G1918' => 'vmu', 'VMungo0720G2387' => 'vmu', 'VMungo0720G2961' => 'vmu', 'VMungo1215G2154' => 'vmu', 'VMungo1383G2411' => 'vmu', 'Zm00001eb051130' => 'zma', 'Zm00001eb116830' => 'zma', 'Zm00001eb116850' => 'zma', 'Zm00001eb151740' => 'zma', 'Zm00001eb292360' => 'zma', 'Zm00001eb301640' => 'zma' ), 'gf_id' => 'HOM05D000856', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000856' ), 'data_identifier' => 'HOM05D000856', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000856', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p00010' => 'bna', 'A03p04160' => 'bna', 'A03p17160' => 'bna', 'A04p23370' => 'bna', 'A05p14860' => 'bna', 'A08p37020' => 'bna', 'A09p08050' => 'bna', 'A09p66800' => 'bna', 'A09p67940' => 'bna', 'A10p02680' => 'bna', 'A10p05320' => 'bna', 'Aa31LG1G20560' => 'aar', 'Aa31LG1G20610' => 'aar', 'Aa31LG1G7810' => 'aar', 'Aa31LG5G3590' => 'aar', 'Aa31LG5G6140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3819' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4683' => 'aag', 'Actinidia04480' => 'ach', 'Actinidia05466' => 'ach', 'Actinidia08445' => 'ach', 'Actinidia21170' => 'ach', 'Actinidia24812' => 'ach', 'Actinidia24951' => 'ach', 'Actinidia40088' => 'ach', 'Ah.02g111660' => 'amhyb', 'Ah.11g048900' => 'amhyb', 'Ah.11g049910' => 'amhyb', 'AL1G13870' => 'aly', 'AL1G13880' => 'aly', 'AL1G16760' => 'aly', 'AL390U10020' => 'aly', 'AL4G25520' => 'aly', 'AL6G19890' => 'aly', 'AL6G19900' => 'aly', 'AL6G19910' => 'aly', 'AL8G40100' => 'aly', 'Aqoxy2G03562' => 'aox', 'Aqoxy5G00316' => 'aox', 'Aqoxy5G00926' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1628KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1H403S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2FU6SJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.882I6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8YRY2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YN1SN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AF70II' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZA8L1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F916KL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHRD8H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KTZ8QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S22EMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8M29T' => 'arhy', 'AT1G04270' => 'ath', 'AT1G04280' => 'ath', 'AT1G06750' => 'ath', 'AT1G33850' => 'ath', 'AT2G30630' => 'ath', 'AT5G09490' => 'ath', 'AT5G09500' => 'ath', 'AT5G09510' => 'ath', 'AT5G43640' => 'ath', 'AT5G63070' => 'ath', 'ATR0605G315' => 'atr', 'Atru.chr11.175' => 'acertr', 'Atru.chr11.653' => 'acertr', 'Atru.chr3.1616' => 'acertr', 'Atru.chr4.2230' => 'acertr', 'Atru.chr4.2232' => 'acertr', 'Atru.chr5.1598' => 'acertr', 'Atru.chr5.1600' => 'acertr', 'Atru.chr5.2188' => 'acertr', 'AUR62008326' => 'cqu', 'AUR62011922' => 'cqu', 'AUR62011924' => 'cqu', 'AUR62021771' => 'cqu', 'AUR62032237' => 'cqu', 'AUR62032240' => 'cqu', 'BcaB01g05572' => 'bca', 'BcaB02g10337' => 'bca', 'BcaB04g19944' => 'bca', 'BcaB05g21548' => 'bca', 'BcaB05g21549' => 'bca', 'BcaB05g23227' => 'bca', 'BcaB06g26256' => 'bca', 'BcaB06g26257' => 'bca', 'BcaB06g28379' => 'bca', 'BcaC02g11159' => 'bca', 'BcaC03g13258' => 'bca', 'BcaC03g13259' => 'bca', 'BcaC05g24456' => 'bca', 'BcaC05g24457' => 'bca', 'BcaC07g36922' => 'bca', 'BcaC07g36923' => 'bca', 'BcaC07g42050' => 'bca', 'BcaC07g42176' => 'bca', 'BcaC07g42195' => 'bca', 'BcaC07g42196' => 'bca', 'BcaNung06674' => 'bca', 'BolC2t06351H' => 'bol', 'BolC2t06352H' => 'bol', 'BolC3t12993H' => 'bol', 'BolC4t23525H' => 'bol', 'BolC4t27475H' => 'bol', 'BolC5t29025H' => 'bol', 'BolC5t29026H' => 'bol', 'BolC8t46898H' => 'bol', 'BolC8t46899H' => 'bol', 'BolC8t52630H' => 'bol', 'BolC8t52765H' => 'bol', 'BolC9t53824H' => 'bol', 'BraA03t09760Z' => 'bra', 'BraA03t10990Z' => 'bra', 'BraA05t20413Z' => 'bra', 'BraA08t35602Z' => 'bra', 'BraA09t36458Z' => 'bra', 'BraA09t42018Z' => 'bra', 'BraA09t42129Z' => 'bra', 'BraA10t42536Z' => 'bra', 'BraA10t42537Z' => 'bra', 'C01p10690' => 'bna', 'C02p03890' => 'bna', 'C02p03900' => 'bna', 'C03p04620' => 'bna', 'C04p19870' => 'bna', 'C04p59670' => 'bna', 'C05p02460' => 'bna', 'C05p02470' => 'bna', 'C08p00980' => 'bna', 'C08p00990' => 'bna', 'C08p51030' => 'bna', 'C08p52360' => 'bna', 'C09p09120' => 'bna', 'CAN.G19.15' => 'can', 'CAN.G251.10' => 'can', 'CAN.G251.9' => 'can', 'CAN.G398.24' => 'can', 'CAN.G410.32' => 'can', 'CAN.G881.2' => 'can', 'CANSAT01G3025' => 'cansat', 'CANSAT78G1211' => 'cansat', 'CANSAT78G1218' => 'cansat', 'CANSAT78G1521' => 'cansat', 'CANSAT78G1670' => 'cansat', 'CARHR003600' => 'chi', 'CARHR003610' => 'chi', 'CARHR006290' => 'chi', 'CARHR006430' => 'chi', 'CARHR124110' => 'chi', 'CARHR203870' => 'chi', 'CARHR203880' => 'chi', 'CARHR203890' => 'chi', 'CARHR276880' => 'chi', 'Carub.0001s0346' => 'cru', 'Carub.0001s0347' => 'cru', 'Carub.0001s0607' => 'cru', 'Carub.0003s2768' => 'cru', 'Carub.0003s2769' => 'cru', 'Carub.0004s1178' => 'cru', 'Carub.0006s0806' => 'cru', 'Carub.0006s0807' => 'cru', 'Carub.0006s0808' => 'cru', 'Carub.0008s0501' => 'cru', 'Carub.0008s2379' => 'cru', 'Ca_08655_v3' => 'car', 'Ca_08922_v3' => 'car', 'Ca_08923_v3' => 'car', 'Ca_09119_v3' => 'car', 'Ca_09703_v3' => 'car', 'Ca_09705_v3' => 'car', 'Ca_09835_v3' => 'car', 'Ca_26403_v3' => 'car', 'Ca_30719_v3' => 'car', 'CBR_g17958' => 'cbr', 'CBR_g40516' => 'cbr', 'Cc00_g05350' => 'ccan', 'Cc01_g18690' => 'ccan', 'Cc03_g04830' => 'ccan', 'Cc03_g04850' => 'ccan', 'CDE02G4469' => 'cde', 'CDE06G0883' => 'cde', 'CDE06G1295' => 'cde', 'CDE06G1390' => 'cde', 'CDE07G0584' => 'cde', 'CDE07G1084' => 'cde', 'CDE08G1259' => 'cde', 'Cfa002341' => 'cfa', 'Cfa024337' => 'cfa', 'Ciclev10004749m.g' => 'ccl', 'Ciclev10006127m.g' => 'ccl', 'Ciclev10019720m.g' => 'ccl', 'Ciclev10022652m.g' => 'ccl', 'CiPaw.01G190400' => 'cil', 'CiPaw.01G190500' => 'cil', 'CiPaw.02G116400' => 'cil', 'CiPaw.02G116500' => 'cil', 'CiPaw.04G183000' => 'cil', 'CiPaw.04G183300' => 'cil', 'ClCG05G004610' => 'cla', 'ClCG05G004620' => 'cla', 'ClCG06G006730' => 'cla', 'ClCG06G006740' => 'cla', 'ClCG11G003690' => 'cla', 'COL.COLO4_08276' => 'col', 'COL.COLO4_08277' => 'col', 'COL.COLO4_15787' => 'col', 'COL.COLO4_15789' => 'col', 'Cpa.g.c44815' => 'cpa', 'Cpa.g.sc52.144' => 'cpa', 'Cpa.g.sc58.46' => 'cpa', 'Cpa.g.sc58.47' => 'cpa', 'Cre08.g360900' => 'cre', 'CsaV3_2G013030' => 'csa', 'CsaV3_2G013050' => 'csa', 'CsaV3_2G015620' => 'csa', 'CsaV3_3G012590' => 'csa', 'CsaV3_3G012600' => 'csa', 'CSS0001641' => 'camsi', 'CSS0008310' => 'camsi', 'CSS0013011' => 'camsi', 'CSS0017147' => 'camsi', 'CSS0022970' => 'camsi', 'CSS0025655' => 'camsi', 'CSS0028665' => 'camsi', 'CSS0029117' => 'camsi', 'CSS0032024' => 'camsi', 'CSS0039681' => 'camsi', 'CSS0046516' => 'camsi', 'CSS0050307' => 'camsi', 'DCAR_005871' => 'dca', 'DCAR_007342' => 'dca', 'DCAR_024228' => 'dca', 'DCAR_027277' => 'dca', 'DCAR_030718' => 'dca', 'Dinv20287' => 'din', 'Dinv22461' => 'din', 'Dinv22464' => 'din', 'Dinv29912' => 'din', 'Dinv29913' => 'din', 'Dinv34580' => 'din', 'Dinv34582' => 'din', 'Dinv44632' => 'din', 'Duzib052G0266' => 'dzi', 'Duzib133G0907' => 'dzi', 'Duzib133G1034' => 'dzi', 'Duzib138G0207' => 'dzi', 'Duzib138G0491' => 'dzi', 'Duzib151G0812' => 'dzi', 'Duzib151G1166' => 'dzi', 'Duzib168G0192' => 'dzi', 'Duzib211G0077' => 'dzi', 'Duzib212G0429' => 'dzi', 'Duzib212G0472' => 'dzi', 'ECA233G2617' => 'eca', 'ECA236G4188' => 'eca', 'ECA240G0936' => 'eca', 'ECA240G1129' => 'eca', 'ECA247G0623' => 'eca', 'EL10Ac5g10451' => 'bvu', 'EL10Ac5g10453' => 'bvu', 'EL10Ac5g10894' => 'bvu', 'Eucgr.H00192' => 'egr', 'Eucgr.H00193' => 'egr', 'Eucgr.H00194' => 'egr', 'Eucgr.J01562' => 'egr', 'Eucgr.K03301' => 'egr', 'FAN02G0632' => 'fan', 'FAN05G5378' => 'fan', 'FAN09G3247' => 'fan', 'FAN12G0435' => 'fan', 'FAN12G2426' => 'fan', 'FAN14G1707' => 'fan', 'FAN14G4725' => 'fan', 'FAN15G2071' => 'fan', 'FAN17G3065' => 'fan', 'FAN19G1376' => 'fan', 'FAN20G0354' => 'fan', 'FAN20G2429' => 'fan', 'FAN20G2658' => 'fan', 'FAN24G2343' => 'fan', 'FAN27G2362' => 'fan', 'FAN28G1765' => 'fan', 'FvH4_1g16020' => 'fve', 'FvH4_2g04890' => 'fve', 'FvH4_2g22270' => 'fve', 'FvH4_4g02630' => 'fve', 'FvH4_4g02640' => 'fve', 'FvH4_6g02650' => 'fve', 'Glyma.02G140600' => 'gma', 'Glyma.03G159900' => 'gma', 'Glyma.05G234800' => 'gma', 'Glyma.07G269600' => 'gma', 'Glyma.08G042300' => 'gma', 'Glyma.10G033500' => 'gma', 'Glyma.10G185200' => 'gma', 'Glyma.17G004300' => 'gma', 'Glyma.19G161900' => 'gma', 'Glyma.20G205100' => 'gma', 'Glyma.20G205200' => 'gma', 'Gohir.A01G139101' => 'ghi', 'Gohir.A02G035600' => 'ghi', 'Gohir.A02G117901' => 'ghi', 'Gohir.A07G210100' => 'ghi', 'Gohir.A07G210200' => 'ghi', 'Gohir.A08G061100' => 'ghi', 'Gohir.A09G223000' => 'ghi', 'Gohir.A09G223100' => 'ghi', 'Gohir.A10G113900' => 'ghi', 'Gohir.A10G114000' => 'ghi', 'Gohir.D02G042300' => 'ghi', 'Gohir.D07G216100' => 'ghi', 'Gohir.D07G216200' => 'ghi', 'Gohir.D08G070400' => 'ghi', 'Gohir.D09G225000' => 'ghi', 'Gohir.D09G225100' => 'ghi', 'Gohir.D10G152300' => 'ghi', 'Gohir.D10G153200' => 'ghi', 'Gohir.D11G133701' => 'ghi', 'Gorai.004G074100' => 'gra', 'Gorai.005G046800' => 'gra', 'Gorai.006G246500' => 'gra', 'Gorai.006G246600' => 'gra', 'Gorai.007G142900' => 'gra', 'Gorai.011G171000' => 'gra', 'Gorai.011G171100' => 'gra', 'Gorai.013G104300' => 'gra', 'Gorai.013G104400' => 'gra', 'GSVIVG01000754001' => 'vvi', 'GSVIVG01000756001' => 'vvi', 'GSVIVG01010903001' => 'vvi', 'GSVIVG01017623001' => 'vvi', 'GSVIVG01018113001' => 'vvi', 'GSVIVG01018116001' => 'vvi', 'GSVIVG01018118001' => 'vvi', 'HanXRQChr03g0076211' => 'han', 'HanXRQChr03g0092431' => 'han', 'HanXRQChr03g0092441' => 'han', 'HanXRQChr03g0092591' => 'han', 'HanXRQChr03g0092671' => 'han', 'HanXRQChr03g0092681' => 'han', 'HanXRQChr03g0092691' => 'han', 'HanXRQChr03g0092701' => 'han', 'HanXRQChr03g0092721' => 'han', 'HanXRQChr03g0092731' => 'han', 'HanXRQChr04g0113681' => 'han', 'HanXRQChr10g0281371' => 'han', 'HanXRQChr11g0337141' => 'han', 'HanXRQChr13g0424521' => 'han', 'HanXRQChr13g0424531' => 'han', 'HanXRQChr13g0424541' => 'han', 'HanXRQChr16g0498221' => 'han', 'Haze_04377' => 'cav', 'Haze_11298' => 'cav', 'Haze_24547' => 'cav', 'Haze_24550' => 'cav', 'Haze_26587' => 'cav', 'Hma1.2p1_0650F.1_g195410' => 'hma', 'Hma1.2p1_0893F.1_g233470' => 'hma', 'HPP92_006508' => 'vpl', 'HPP92_024780' => 'vpl', 'Hund02688' => 'sun', 'Hund09380' => 'sun', 'Hund09381' => 'sun', 'Hund09832' => 'sun', 'Hund09833' => 'sun', 'Hund11351' => 'sun', 'Hund11513' => 'sun', 'Lalb_Chr06g0162591' => 'lal', 'Lalb_Chr06g0162601' => 'lal', 'Lalb_Chr06g0169321' => 'lal', 'Lalb_Chr09g0330951' => 'lal', 'Lalb_Chr16g0387631' => 'lal', 'Lalb_Chr21g0306241' => 'lal', 'Lalb_Chr25g0290051' => 'lal', 'Lalb_Chr25g0290061' => 'lal', 'Lalb_Chr25g0290071' => 'lal', 'Lj1g0003876' => 'lja', 'Lj1P1207T36' => 'lonja', 'Lj2C1156G12' => 'lonja', 'Lj3A793G39' => 'lonja', 'Lj3C580G2' => 'lonja', 'Lj3C780G2' => 'lonja', 'Lj3C780T4' => 'lonja', 'Lj3C793G9' => 'lonja', 'Lj4g0012960' => 'lja', 'Lj5g0021252' => 'lja', 'Lj5g0021484' => 'lja', 'Lj5g0024528' => 'lja', 'Lj6A399T12' => 'lonja', 'Lj6A656G65' => 'lonja', 'Lsat_1_v5_gn_3_125500' => 'lsa', 'Lsat_1_v5_gn_3_125540' => 'lsa', 'Lsat_1_v5_gn_5_72701' => 'lsa', 'Lsat_1_v5_gn_8_91560' => 'lsa', 'Lsat_1_v5_gn_9_9640' => 'lsa', 'Manes.01G200600' => 'mes', 'Manes.01G200700' => 'mes', 'Manes.03G168900' => 'mes', 'Manes.03G169000' => 'mes', 'Manes.05G085801' => 'mes', 'Manes.05G086200' => 'mes', 'Manes.15G036700' => 'mes', 'Manes.15G036900' => 'mes', 'Mapoly0004s0172' => 'mpo', 'Mapoly0023s0001' => 'mpo', 'Mapoly0142s0012' => 'mpo', 'MBI01_g32854_MAGBIO' => 'mbi', 'MBI11_g24427_MAGBIO' => 'mbi', 'MBI11_g47319_MAGBIO' => 'mbi', 'MCO01G433' => 'mco', 'MD00G1187800' => 'mdo', 'MD04G1226500' => 'mdo', 'MD05G1203900' => 'mdo', 'MD10G1191100' => 'mdo', 'MD12G1243500' => 'mdo', 'MD13G1207000' => 'mdo', 'MD13G1207100' => 'mdo', 'MD16G1208600' => 'mdo', 'Medtr1g050352' => 'mtr', 'Medtr1g070385' => 'mtr', 'Medtr1g070450' => 'mtr', 'Medtr1g075200' => 'mtr', 'Medtr1g075250' => 'mtr', 'Medtr1g075260' => 'mtr', 'Medtr1g475250' => 'mtr', 'Medtr4g075450' => 'mtr', 'Medtr7g096300' => 'mtr', 'Medtr8g105110' => 'mtr', 'MELO3C006470.2' => 'cme', 'MELO3C006471.2' => 'cme', 'MELO3C020772.2' => 'cme', 'MELO3C026780.2' => 'cme', 'MELO3C026781.2' => 'cme', 'Migut.D00390' => 'egut', 'Migut.G00435' => 'egut', 'Migut.G00436' => 'egut', 'Migut.G00718' => 'egut', 'MSTRG.21891' => 'ama', 'MSTRG.26910' => 'ama', 'MSTRG.4099' => 'ama', 'MSTRG.9925' => 'ama', 'Nitab4.5_0000165g0010' => 'nta', 'Nitab4.5_0000209g0180' => 'nta', 'Nitab4.5_0000244g0440' => 'nta', 'Nitab4.5_0000525g0220' => 'nta', 'Nitab4.5_0001597g0020' => 'nta', 'Nitab4.5_0001878g0040' => 'nta', 'Nitab4.5_0001878g0060' => 'nta', 'Nitab4.5_0002838g0100' => 'nta', 'Nitab4.5_0002838g0120' => 'nta', 'Nitab4.5_0004798g0030' => 'nta', 'Nitab4.5_0005420g0010' => 'nta', 'Nitab4.5_0005507g0010' => 'nta', 'Nitab4.5_0005574g0020' => 'nta', 'Nitab4.5_0005838g0010' => 'nta', 'Nitab4.5_0010580g0020' => 'nta', 'Nn1g02599' => 'nnu', 'Nn1g02608' => 'nnu', 'Nn3g17742' => 'nnu', 'Nn3g19534' => 'nnu', 'Nn3g19535' => 'nnu', 'Oeu008790.1' => 'oeu', 'Oeu008792.1' => 'oeu', 'Oeu032590.1' => 'oeu', 'Oeu035349.1' => 'oeu', 'Oeu049791.1' => 'oeu', 'Os01g0774500' => 'osa', 'Os03g0628800' => 'osa', 'Os03g0798600' => 'osa', 'Os05g0508800' => 'osa', 'Peaxi162Scf00036g02018' => 'pax', 'Peaxi162Scf00578g00032' => 'pax', 'Peaxi162Scf00578g00317' => 'pax', 'Peaxi162Scf00785g00114' => 'pax', 'Peaxi162Scf00813g00119' => 'pax', 'Peaxi162Scf00906g00227' => 'pax', 'PGR004G0875' => 'pgr', 'PGR004G2424' => 'pgr', 'PGR031G1239' => 'pgr', 'PGR031G2474' => 'pgr', 'PGR044G0423' => 'pgr', 'PGSC0003DMG400001128' => 'stu', 'PGSC0003DMG400007336' => 'stu', 'PGSC0003DMG400016318' => 'stu', 'PGSC0003DMG400016319' => 'stu', 'PGSC0003DMG400018074' => 'stu', 'Phvul.001G157700' => 'pvu', 'Phvul.002G148550' => 'pvu', 'Phvul.002G320200' => 'pvu', 'Phvul.003G089200' => 'pvu', 'Phvul.007G126000' => 'pvu', 'Phvul.007G126100' => 'pvu', 'Phvul.007G178000' => 'pvu', 'Phvul.007G178200' => 'pvu', 'Potri.002G043000' => 'ptr', 'Potri.002G043200' => 'ptr', 'Potri.003G123750' => 'ptr', 'Potri.005G055401' => 'ptr', 'Potri.005G219700' => 'ptr', 'Potri.005G220000' => 'ptr', 'Potri.008G161901' => 'ptr', 'Potri.008G162000' => 'ptr', 'Potri.008G162400' => 'ptr', 'Potri.010G076900' => 'ptr', 'Pp3c12_9180' => 'ppa', 'Pp3c13_19770' => 'ppa', 'Pp3c14_22950' => 'ppa', 'Pp3c16_12160' => 'ppa', 'Pp3c27_7820' => 'ppa', 'Pp3c2_3490' => 'ppa', 'Pp3c3_23700' => 'ppa', 'Pp3c3_36520' => 'ppa', 'Pp3c4_15250' => 'ppa', 'PRCOL_00007002' => 'pco', 'Prupe.1G030600' => 'ppe', 'Prupe.1G030700' => 'ppe', 'Prupe.6G345200' => 'ppe', 'Prupe.8G230300' => 'ppe', 'Prupe.8G230500' => 'ppe', 'Psat3g059600' => 'psa', 'Psat5g200920' => 'psa', 'Psat6g056440' => 'psa', 'Psat6g057360' => 'psa', 'Psat6g134120' => 'psa', 'Psat6g134160' => 'psa', 'Psat7g008640' => 'psa', 'Psat7g185240' => 'psa', 'PSO017G1330' => 'pso', 'PSO063G6097' => 'pso', 'PSO170G0835' => 'pso', 'PSO170G2499' => 'pso', 'PSO210G5058' => 'pso', 'PSO210G6154' => 'pso', 'PSO585G0031' => 'pso', 'PSO832G0264' => 'pso', 'PSO832G4288' => 'pso', 'QL03p027355' => 'qlo', 'QL03p027430' => 'qlo', 'QL04p081380' => 'qlo', 'QL06p015642' => 'qlo', 'QL06p015650' => 'qlo', 'QL06p015686' => 'qlo', 'QL12p042927' => 'qlo', 'QL93p1863_0035' => 'qlo', 'RcHm_v2.0_Chr3g0450581' => 'rch', 'RcHm_v2.0_Chr4g0390371' => 'rch', 'RcHm_v2.0_Chr4g0390381' => 'rch', 'RcHm_v2.0_Chr4g0390491' => 'rch', 'RcHm_v2.0_Chr4g0390501' => 'rch', 'RcHm_v2.0_Chr6g0289231' => 'rch', 'Rhsim04G0190400' => 'rsi', 'Rhsim04G0190500' => 'rsi', 'Rhsim04G0190600' => 'rsi', 'Rhsim13G0031400' => 'rsi', 'Rhsim13G0165600' => 'rsi', 'RhsimUnG0114600' => 'rsi', 'RhsimUnG0114700' => 'rsi', 'Sabra02G0034800' => 'sbr', 'Sabra02G0035100' => 'sbr', 'Sabra05G0168600' => 'sbr', 'Sabra05G0168800' => 'sbr', 'Sabra08G0123700' => 'sbr', 'Sabra10G0031900' => 'sbr', 'Sabra13G0039000' => 'sbr', 'SalBow2G0782' => 'sbo', 'SalBow2G1403' => 'sbo', 'SalBow4G0074' => 'sbo', 'SalBow4G2635' => 'sbo', 'SalBow5G3010' => 'sbo', 'Sc05g0000870' => 'sci', 'Sc05g0000890' => 'sci', 'Sc13g0005000' => 'sci', 'Sc13g0005030' => 'sci', 'Sc19g0003790' => 'sci', 'Sc19g0003800' => 'sci', 'Sed0003467' => 'sed', 'Sed0009355' => 'sed', 'Sed0009894' => 'sed', 'Sed0011972' => 'sed', 'Sed0021483' => 'sed', 'Sed0021750' => 'sed', 'Sed0026279' => 'sed', 'SEGI_05312' => 'sgi', 'SEGI_10112' => 'sgi', 'SEGI_15835' => 'sgi', 'SEGI_30386' => 'sgi', 'SEGI_34122' => 'sgi', 'SEGI_35063' => 'sgi', 'SGA_v2.0_scaffold101G29794' => 'sas', 'SGA_v2.0_scaffold1G00573' => 'sas', 'SGA_v2.0_scaffold79G25637' => 'sas', 'SGA_v2.0_scaffold88G27283' => 'sas', 'SGA_v2.0_scaffold88G27285' => 'sas', 'SGA_v2.0_scaffold88G27331' => 'sas', 'SHI09937' => 'shi', 'SMO119G0302' => 'smo', 'SMO137G0231' => 'smo', 'SMO367G1151' => 'smo', 'Solyc02g082000.3' => 'sly', 'Solyc06g031670.3' => 'sly', 'Solyc06g053810.3' => 'sly', 'Solyc07g025457.1' => 'sly', 'Solyc08g059740.1' => 'sly', 'Solyc08g059750.3' => 'sly', 'Solyc09g083370.3' => 'sly', 'Solyc12g038950.3' => 'sly', 'Sopen02g026630' => 'spe', 'Sopen06g018930' => 'spe', 'Sopen06g018940' => 'spe', 'Sopen08g009460' => 'spe', 'Sopen09g032290' => 'spe', 'Sp1g03080' => 'spa', 'Sp1g03090' => 'spa', 'Sp1g05480' => 'spa', 'Sp2g07860' => 'spa', 'Sp2g08430' => 'spa', 'Sp2g08440' => 'spa', 'Sp2g26200' => 'spa', 'Sp4g13170' => 'spa', 'Sp6g33840' => 'spa', 'SpUn1204_0010' => 'spa', 'TAR365G0908' => 'tar', 'TAR381G1270' => 'tar', 'TAR381G1651' => 'tar', 'TAR625G1131' => 'tar', 'TAR633G0962' => 'tar', 'TAR633G1729' => 'tar', 'TAR633G1864' => 'tar', 'TAR636G0221' => 'tar', 'TAR636G0314' => 'tar', 'TAR636G3202' => 'tar', 'THA.LOC104800805' => 'tha', 'THA.LOC104801096' => 'tha', 'THA.LOC104801555' => 'tha', 'THA.LOC104808491' => 'tha', 'THA.LOC104808595' => 'tha', 'THA.LOC104815985' => 'tha', 'THA.LOC104822250' => 'tha', 'THA.LOC104826071' => 'tha', 'Thecc.01G265200' => 'tca', 'Thecc.01G265300' => 'tca', 'Thecc.01G265700' => 'tca', 'Thecc.03G109100' => 'tca', 'Thecc.04G245900' => 'tca', 'Thecc.04G246000' => 'tca', 'Thhalv10003334m.g' => 'esa', 'Thhalv10005508m.g' => 'esa', 'Thhalv10005643m.g' => 'esa', 'Thhalv10007316m.g' => 'esa', 'Thhalv10009006m.g' => 'esa', 'Thhalv10009309m.g' => 'esa', 'Thhalv10014917m.g' => 'esa', 'Thhalv10014919m.g' => 'esa', 'Thhalv10015393m.g' => 'esa', 'Thhalv10016515m.g' => 'esa', 'Thhalv10029242m.g' => 'esa', 'TPR.G16654' => 'tpr', 'TPR.G20589' => 'tpr', 'TPR.G23029' => 'tpr', 'TPR.G27731' => 'tpr', 'TPR.G28889' => 'tpr', 'TPR.G28899' => 'tpr', 'TPR.G30846' => 'tpr', 'TPR.G5452' => 'tpr', 'TPR.G5713' => 'tpr', 'TPR.G9046' => 'tpr', 'TPR.G9061' => 'tpr', 'TWI09G1075' => 'twi', 'TWI12G0806' => 'twi', 'TWI18G0108' => 'twi', 'TWI53G1361' => 'twi', 'TWI73G0185' => 'twi', 'TWI73G0427' => 'twi', 'unitig_37.g12001' => 'ugi', 'unitig_747.g21660' => 'ugi', 'unitig_748.g7232' => 'ugi', 'unitig_748.g7315' => 'ugi', 'unitig_85.g27262' => 'ugi', 'unitig_92.g28220' => 'ugi', 'vmacro02632' => 'vma', 'vmacro08410' => 'vma', 'vmacro08411' => 'vma', 'vmacro15407' => 'vma', 'VMungo0251G3619' => 'vmu', 'VMungo0720G1204' => 'vmu', 'VMungo0720G1918' => 'vmu', 'VMungo0720G2387' => 'vmu', 'VMungo0720G2961' => 'vmu', 'VMungo1215G2154' => 'vmu', 'VMungo1383G2411' => 'vmu', 'Zm00001eb051130' => 'zma', 'Zm00001eb116830' => 'zma', 'Zm00001eb116850' => 'zma', 'Zm00001eb151740' => 'zma', 'Zm00001eb292360' => 'zma', 'Zm00001eb301640' => 'zma' ) $gf_id = 'HOM05D000856' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000856' ) $data_identifier = 'HOM05D000856' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 13, 'ath' => (int) 10, 'atr' => (int) 1, 'acertr' => (int) 8, 'cqu' => (int) 6, 'bca' => (int) 21, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 11, 'car' => (int) 9, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 8, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 5, 'fan' => (int) 16, 'fve' => (int) 6, 'gma' => (int) 11, 'ghi' => (int) 19, 'gra' => (int) 9, 'vvi' => (int) 7, 'han' => (int) 17, 'cav' => (int) 5, 'hma' => (int) 2, 'vpl' => (int) 2, 'sun' => (int) 7, 'lal' => (int) 9, 'lja' => (int) 5, 'lonja' => (int) 9, 'lsa' => (int) 5, 'mes' => (int) 8, 'mpo' => (int) 3, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 10, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 15, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 9, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 9, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 6, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 5, 'spa' => (int) 10, 'tar' => (int) 10, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 11, 'tpr' => (int) 11, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 4, 'vmu' => (int) 7, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb301640' $species_info = array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ) $local_species = 'cla' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000856', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p00010' => 'bna', 'A03p04160' => 'bna', 'A03p17160' => 'bna', 'A04p23370' => 'bna', 'A05p14860' => 'bna', 'A08p37020' => 'bna', 'A09p08050' => 'bna', 'A09p66800' => 'bna', 'A09p67940' => 'bna', 'A10p02680' => 'bna', 'A10p05320' => 'bna', 'Aa31LG1G20560' => 'aar', 'Aa31LG1G20610' => 'aar', 'Aa31LG1G7810' => 'aar', 'Aa31LG5G3590' => 'aar', 'Aa31LG5G6140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3819' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4683' => 'aag', 'Actinidia04480' => 'ach', 'Actinidia05466' => 'ach', 'Actinidia08445' => 'ach', 'Actinidia21170' => 'ach', 'Actinidia24812' => 'ach', 'Actinidia24951' => 'ach', 'Actinidia40088' => 'ach', 'Ah.02g111660' => 'amhyb', 'Ah.11g048900' => 'amhyb', 'Ah.11g049910' => 'amhyb', 'AL1G13870' => 'aly', 'AL1G13880' => 'aly', 'AL1G16760' => 'aly', 'AL390U10020' => 'aly', 'AL4G25520' => 'aly', 'AL6G19890' => 'aly', 'AL6G19900' => 'aly', 'AL6G19910' => 'aly', 'AL8G40100' => 'aly', 'Aqoxy2G03562' => 'aox', 'Aqoxy5G00316' => 'aox', 'Aqoxy5G00926' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1628KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1H403S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2FU6SJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.882I6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8YRY2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YN1SN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AF70II' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZA8L1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F916KL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHRD8H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KTZ8QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S22EMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8M29T' => 'arhy', 'AT1G04270' => 'ath', 'AT1G04280' => 'ath', 'AT1G06750' => 'ath', 'AT1G33850' => 'ath', 'AT2G30630' => 'ath', 'AT5G09490' => 'ath', 'AT5G09500' => 'ath', 'AT5G09510' => 'ath', 'AT5G43640' => 'ath', 'AT5G63070' => 'ath', 'ATR0605G315' => 'atr', 'Atru.chr11.175' => 'acertr', 'Atru.chr11.653' => 'acertr', 'Atru.chr3.1616' => 'acertr', 'Atru.chr4.2230' => 'acertr', 'Atru.chr4.2232' => 'acertr', 'Atru.chr5.1598' => 'acertr', 'Atru.chr5.1600' => 'acertr', 'Atru.chr5.2188' => 'acertr', 'AUR62008326' => 'cqu', 'AUR62011922' => 'cqu', 'AUR62011924' => 'cqu', 'AUR62021771' => 'cqu', 'AUR62032237' => 'cqu', 'AUR62032240' => 'cqu', 'BcaB01g05572' => 'bca', 'BcaB02g10337' => 'bca', 'BcaB04g19944' => 'bca', 'BcaB05g21548' => 'bca', 'BcaB05g21549' => 'bca', 'BcaB05g23227' => 'bca', 'BcaB06g26256' => 'bca', 'BcaB06g26257' => 'bca', 'BcaB06g28379' => 'bca', 'BcaC02g11159' => 'bca', 'BcaC03g13258' => 'bca', 'BcaC03g13259' => 'bca', 'BcaC05g24456' => 'bca', 'BcaC05g24457' => 'bca', 'BcaC07g36922' => 'bca', 'BcaC07g36923' => 'bca', 'BcaC07g42050' => 'bca', 'BcaC07g42176' => 'bca', 'BcaC07g42195' => 'bca', 'BcaC07g42196' => 'bca', 'BcaNung06674' => 'bca', 'BolC2t06351H' => 'bol', 'BolC2t06352H' => 'bol', 'BolC3t12993H' => 'bol', 'BolC4t23525H' => 'bol', 'BolC4t27475H' => 'bol', 'BolC5t29025H' => 'bol', 'BolC5t29026H' => 'bol', 'BolC8t46898H' => 'bol', 'BolC8t46899H' => 'bol', 'BolC8t52630H' => 'bol', 'BolC8t52765H' => 'bol', 'BolC9t53824H' => 'bol', 'BraA03t09760Z' => 'bra', 'BraA03t10990Z' => 'bra', 'BraA05t20413Z' => 'bra', 'BraA08t35602Z' => 'bra', 'BraA09t36458Z' => 'bra', 'BraA09t42018Z' => 'bra', 'BraA09t42129Z' => 'bra', 'BraA10t42536Z' => 'bra', 'BraA10t42537Z' => 'bra', 'C01p10690' => 'bna', 'C02p03890' => 'bna', 'C02p03900' => 'bna', 'C03p04620' => 'bna', 'C04p19870' => 'bna', 'C04p59670' => 'bna', 'C05p02460' => 'bna', 'C05p02470' => 'bna', 'C08p00980' => 'bna', 'C08p00990' => 'bna', 'C08p51030' => 'bna', 'C08p52360' => 'bna', 'C09p09120' => 'bna', 'CAN.G19.15' => 'can', 'CAN.G251.10' => 'can', 'CAN.G251.9' => 'can', 'CAN.G398.24' => 'can', 'CAN.G410.32' => 'can', 'CAN.G881.2' => 'can', 'CANSAT01G3025' => 'cansat', 'CANSAT78G1211' => 'cansat', 'CANSAT78G1218' => 'cansat', 'CANSAT78G1521' => 'cansat', 'CANSAT78G1670' => 'cansat', 'CARHR003600' => 'chi', 'CARHR003610' => 'chi', 'CARHR006290' => 'chi', 'CARHR006430' => 'chi', 'CARHR124110' => 'chi', 'CARHR203870' => 'chi', 'CARHR203880' => 'chi', 'CARHR203890' => 'chi', 'CARHR276880' => 'chi', 'Carub.0001s0346' => 'cru', 'Carub.0001s0347' => 'cru', 'Carub.0001s0607' => 'cru', 'Carub.0003s2768' => 'cru', 'Carub.0003s2769' => 'cru', 'Carub.0004s1178' => 'cru', 'Carub.0006s0806' => 'cru', 'Carub.0006s0807' => 'cru', 'Carub.0006s0808' => 'cru', 'Carub.0008s0501' => 'cru', 'Carub.0008s2379' => 'cru', 'Ca_08655_v3' => 'car', 'Ca_08922_v3' => 'car', 'Ca_08923_v3' => 'car', 'Ca_09119_v3' => 'car', 'Ca_09703_v3' => 'car', 'Ca_09705_v3' => 'car', 'Ca_09835_v3' => 'car', 'Ca_26403_v3' => 'car', 'Ca_30719_v3' => 'car', 'CBR_g17958' => 'cbr', 'CBR_g40516' => 'cbr', 'Cc00_g05350' => 'ccan', 'Cc01_g18690' => 'ccan', 'Cc03_g04830' => 'ccan', 'Cc03_g04850' => 'ccan', 'CDE02G4469' => 'cde', 'CDE06G0883' => 'cde', 'CDE06G1295' => 'cde', 'CDE06G1390' => 'cde', 'CDE07G0584' => 'cde', 'CDE07G1084' => 'cde', 'CDE08G1259' => 'cde', 'Cfa002341' => 'cfa', 'Cfa024337' => 'cfa', 'Ciclev10004749m.g' => 'ccl', 'Ciclev10006127m.g' => 'ccl', 'Ciclev10019720m.g' => 'ccl', 'Ciclev10022652m.g' => 'ccl', 'CiPaw.01G190400' => 'cil', 'CiPaw.01G190500' => 'cil', 'CiPaw.02G116400' => 'cil', 'CiPaw.02G116500' => 'cil', 'CiPaw.04G183000' => 'cil', 'CiPaw.04G183300' => 'cil', 'ClCG05G004610' => 'cla', 'ClCG05G004620' => 'cla', 'ClCG06G006730' => 'cla', 'ClCG06G006740' => 'cla', 'ClCG11G003690' => 'cla', 'COL.COLO4_08276' => 'col', 'COL.COLO4_08277' => 'col', 'COL.COLO4_15787' => 'col', 'COL.COLO4_15789' => 'col', 'Cpa.g.c44815' => 'cpa', 'Cpa.g.sc52.144' => 'cpa', 'Cpa.g.sc58.46' => 'cpa', 'Cpa.g.sc58.47' => 'cpa', 'Cre08.g360900' => 'cre', 'CsaV3_2G013030' => 'csa', 'CsaV3_2G013050' => 'csa', 'CsaV3_2G015620' => 'csa', 'CsaV3_3G012590' => 'csa', 'CsaV3_3G012600' => 'csa', 'CSS0001641' => 'camsi', 'CSS0008310' => 'camsi', 'CSS0013011' => 'camsi', 'CSS0017147' => 'camsi', 'CSS0022970' => 'camsi', 'CSS0025655' => 'camsi', 'CSS0028665' => 'camsi', 'CSS0029117' => 'camsi', 'CSS0032024' => 'camsi', 'CSS0039681' => 'camsi', 'CSS0046516' => 'camsi', 'CSS0050307' => 'camsi', 'DCAR_005871' => 'dca', 'DCAR_007342' => 'dca', 'DCAR_024228' => 'dca', 'DCAR_027277' => 'dca', 'DCAR_030718' => 'dca', 'Dinv20287' => 'din', 'Dinv22461' => 'din', 'Dinv22464' => 'din', 'Dinv29912' => 'din', 'Dinv29913' => 'din', 'Dinv34580' => 'din', 'Dinv34582' => 'din', 'Dinv44632' => 'din', 'Duzib052G0266' => 'dzi', 'Duzib133G0907' => 'dzi', 'Duzib133G1034' => 'dzi', 'Duzib138G0207' => 'dzi', 'Duzib138G0491' => 'dzi', 'Duzib151G0812' => 'dzi', 'Duzib151G1166' => 'dzi', 'Duzib168G0192' => 'dzi', 'Duzib211G0077' => 'dzi', 'Duzib212G0429' => 'dzi', 'Duzib212G0472' => 'dzi', 'ECA233G2617' => 'eca', 'ECA236G4188' => 'eca', 'ECA240G0936' => 'eca', 'ECA240G1129' => 'eca', 'ECA247G0623' => 'eca', 'EL10Ac5g10451' => 'bvu', 'EL10Ac5g10453' => 'bvu', 'EL10Ac5g10894' => 'bvu', 'Eucgr.H00192' => 'egr', 'Eucgr.H00193' => 'egr', 'Eucgr.H00194' => 'egr', 'Eucgr.J01562' => 'egr', 'Eucgr.K03301' => 'egr', 'FAN02G0632' => 'fan', 'FAN05G5378' => 'fan', 'FAN09G3247' => 'fan', 'FAN12G0435' => 'fan', 'FAN12G2426' => 'fan', 'FAN14G1707' => 'fan', 'FAN14G4725' => 'fan', 'FAN15G2071' => 'fan', 'FAN17G3065' => 'fan', 'FAN19G1376' => 'fan', 'FAN20G0354' => 'fan', 'FAN20G2429' => 'fan', 'FAN20G2658' => 'fan', 'FAN24G2343' => 'fan', 'FAN27G2362' => 'fan', 'FAN28G1765' => 'fan', 'FvH4_1g16020' => 'fve', 'FvH4_2g04890' => 'fve', 'FvH4_2g22270' => 'fve', 'FvH4_4g02630' => 'fve', 'FvH4_4g02640' => 'fve', 'FvH4_6g02650' => 'fve', 'Glyma.02G140600' => 'gma', 'Glyma.03G159900' => 'gma', 'Glyma.05G234800' => 'gma', 'Glyma.07G269600' => 'gma', 'Glyma.08G042300' => 'gma', 'Glyma.10G033500' => 'gma', 'Glyma.10G185200' => 'gma', 'Glyma.17G004300' => 'gma', 'Glyma.19G161900' => 'gma', 'Glyma.20G205100' => 'gma', 'Glyma.20G205200' => 'gma', 'Gohir.A01G139101' => 'ghi', 'Gohir.A02G035600' => 'ghi', 'Gohir.A02G117901' => 'ghi', 'Gohir.A07G210100' => 'ghi', 'Gohir.A07G210200' => 'ghi', 'Gohir.A08G061100' => 'ghi', 'Gohir.A09G223000' => 'ghi', 'Gohir.A09G223100' => 'ghi', 'Gohir.A10G113900' => 'ghi', 'Gohir.A10G114000' => 'ghi', 'Gohir.D02G042300' => 'ghi', 'Gohir.D07G216100' => 'ghi', 'Gohir.D07G216200' => 'ghi', 'Gohir.D08G070400' => 'ghi', 'Gohir.D09G225000' => 'ghi', 'Gohir.D09G225100' => 'ghi', 'Gohir.D10G152300' => 'ghi', 'Gohir.D10G153200' => 'ghi', 'Gohir.D11G133701' => 'ghi', 'Gorai.004G074100' => 'gra', 'Gorai.005G046800' => 'gra', 'Gorai.006G246500' => 'gra', 'Gorai.006G246600' => 'gra', 'Gorai.007G142900' => 'gra', 'Gorai.011G171000' => 'gra', 'Gorai.011G171100' => 'gra', 'Gorai.013G104300' => 'gra', 'Gorai.013G104400' => 'gra', 'GSVIVG01000754001' => 'vvi', 'GSVIVG01000756001' => 'vvi', 'GSVIVG01010903001' => 'vvi', 'GSVIVG01017623001' => 'vvi', 'GSVIVG01018113001' => 'vvi', 'GSVIVG01018116001' => 'vvi', 'GSVIVG01018118001' => 'vvi', 'HanXRQChr03g0076211' => 'han', 'HanXRQChr03g0092431' => 'han', 'HanXRQChr03g0092441' => 'han', 'HanXRQChr03g0092591' => 'han', 'HanXRQChr03g0092671' => 'han', 'HanXRQChr03g0092681' => 'han', 'HanXRQChr03g0092691' => 'han', 'HanXRQChr03g0092701' => 'han', 'HanXRQChr03g0092721' => 'han', 'HanXRQChr03g0092731' => 'han', 'HanXRQChr04g0113681' => 'han', 'HanXRQChr10g0281371' => 'han', 'HanXRQChr11g0337141' => 'han', 'HanXRQChr13g0424521' => 'han', 'HanXRQChr13g0424531' => 'han', 'HanXRQChr13g0424541' => 'han', 'HanXRQChr16g0498221' => 'han', 'Haze_04377' => 'cav', 'Haze_11298' => 'cav', 'Haze_24547' => 'cav', 'Haze_24550' => 'cav', 'Haze_26587' => 'cav', 'Hma1.2p1_0650F.1_g195410' => 'hma', 'Hma1.2p1_0893F.1_g233470' => 'hma', 'HPP92_006508' => 'vpl', 'HPP92_024780' => 'vpl', 'Hund02688' => 'sun', 'Hund09380' => 'sun', 'Hund09381' => 'sun', 'Hund09832' => 'sun', 'Hund09833' => 'sun', 'Hund11351' => 'sun', 'Hund11513' => 'sun', 'Lalb_Chr06g0162591' => 'lal', 'Lalb_Chr06g0162601' => 'lal', 'Lalb_Chr06g0169321' => 'lal', 'Lalb_Chr09g0330951' => 'lal', 'Lalb_Chr16g0387631' => 'lal', 'Lalb_Chr21g0306241' => 'lal', 'Lalb_Chr25g0290051' => 'lal', 'Lalb_Chr25g0290061' => 'lal', 'Lalb_Chr25g0290071' => 'lal', 'Lj1g0003876' => 'lja', 'Lj1P1207T36' => 'lonja', 'Lj2C1156G12' => 'lonja', 'Lj3A793G39' => 'lonja', 'Lj3C580G2' => 'lonja', 'Lj3C780G2' => 'lonja', 'Lj3C780T4' => 'lonja', 'Lj3C793G9' => 'lonja', 'Lj4g0012960' => 'lja', 'Lj5g0021252' => 'lja', 'Lj5g0021484' => 'lja', 'Lj5g0024528' => 'lja', 'Lj6A399T12' => 'lonja', 'Lj6A656G65' => 'lonja', 'Lsat_1_v5_gn_3_125500' => 'lsa', 'Lsat_1_v5_gn_3_125540' => 'lsa', 'Lsat_1_v5_gn_5_72701' => 'lsa', 'Lsat_1_v5_gn_8_91560' => 'lsa', 'Lsat_1_v5_gn_9_9640' => 'lsa', 'Manes.01G200600' => 'mes', 'Manes.01G200700' => 'mes', 'Manes.03G168900' => 'mes', 'Manes.03G169000' => 'mes', 'Manes.05G085801' => 'mes', 'Manes.05G086200' => 'mes', 'Manes.15G036700' => 'mes', 'Manes.15G036900' => 'mes', 'Mapoly0004s0172' => 'mpo', 'Mapoly0023s0001' => 'mpo', 'Mapoly0142s0012' => 'mpo', 'MBI01_g32854_MAGBIO' => 'mbi', 'MBI11_g24427_MAGBIO' => 'mbi', 'MBI11_g47319_MAGBIO' => 'mbi', 'MCO01G433' => 'mco', 'MD00G1187800' => 'mdo', 'MD04G1226500' => 'mdo', 'MD05G1203900' => 'mdo', 'MD10G1191100' => 'mdo', 'MD12G1243500' => 'mdo', 'MD13G1207000' => 'mdo', 'MD13G1207100' => 'mdo', 'MD16G1208600' => 'mdo', 'Medtr1g050352' => 'mtr', 'Medtr1g070385' => 'mtr', 'Medtr1g070450' => 'mtr', 'Medtr1g075200' => 'mtr', 'Medtr1g075250' => 'mtr', 'Medtr1g075260' => 'mtr', 'Medtr1g475250' => 'mtr', 'Medtr4g075450' => 'mtr', 'Medtr7g096300' => 'mtr', 'Medtr8g105110' => 'mtr', 'MELO3C006470.2' => 'cme', 'MELO3C006471.2' => 'cme', 'MELO3C020772.2' => 'cme', 'MELO3C026780.2' => 'cme', 'MELO3C026781.2' => 'cme', 'Migut.D00390' => 'egut', 'Migut.G00435' => 'egut', 'Migut.G00436' => 'egut', 'Migut.G00718' => 'egut', 'MSTRG.21891' => 'ama', 'MSTRG.26910' => 'ama', 'MSTRG.4099' => 'ama', 'MSTRG.9925' => 'ama', 'Nitab4.5_0000165g0010' => 'nta', 'Nitab4.5_0000209g0180' => 'nta', 'Nitab4.5_0000244g0440' => 'nta', 'Nitab4.5_0000525g0220' => 'nta', 'Nitab4.5_0001597g0020' => 'nta', 'Nitab4.5_0001878g0040' => 'nta', 'Nitab4.5_0001878g0060' => 'nta', 'Nitab4.5_0002838g0100' => 'nta', 'Nitab4.5_0002838g0120' => 'nta', 'Nitab4.5_0004798g0030' => 'nta', 'Nitab4.5_0005420g0010' => 'nta', 'Nitab4.5_0005507g0010' => 'nta', 'Nitab4.5_0005574g0020' => 'nta', 'Nitab4.5_0005838g0010' => 'nta', 'Nitab4.5_0010580g0020' => 'nta', 'Nn1g02599' => 'nnu', 'Nn1g02608' => 'nnu', 'Nn3g17742' => 'nnu', 'Nn3g19534' => 'nnu', 'Nn3g19535' => 'nnu', 'Oeu008790.1' => 'oeu', 'Oeu008792.1' => 'oeu', 'Oeu032590.1' => 'oeu', 'Oeu035349.1' => 'oeu', 'Oeu049791.1' => 'oeu', 'Os01g0774500' => 'osa', 'Os03g0628800' => 'osa', 'Os03g0798600' => 'osa', 'Os05g0508800' => 'osa', 'Peaxi162Scf00036g02018' => 'pax', 'Peaxi162Scf00578g00032' => 'pax', 'Peaxi162Scf00578g00317' => 'pax', 'Peaxi162Scf00785g00114' => 'pax', 'Peaxi162Scf00813g00119' => 'pax', 'Peaxi162Scf00906g00227' => 'pax', 'PGR004G0875' => 'pgr', 'PGR004G2424' => 'pgr', 'PGR031G1239' => 'pgr', 'PGR031G2474' => 'pgr', 'PGR044G0423' => 'pgr', 'PGSC0003DMG400001128' => 'stu', 'PGSC0003DMG400007336' => 'stu', 'PGSC0003DMG400016318' => 'stu', 'PGSC0003DMG400016319' => 'stu', 'PGSC0003DMG400018074' => 'stu', 'Phvul.001G157700' => 'pvu', 'Phvul.002G148550' => 'pvu', 'Phvul.002G320200' => 'pvu', 'Phvul.003G089200' => 'pvu', 'Phvul.007G126000' => 'pvu', 'Phvul.007G126100' => 'pvu', 'Phvul.007G178000' => 'pvu', 'Phvul.007G178200' => 'pvu', 'Potri.002G043000' => 'ptr', 'Potri.002G043200' => 'ptr', 'Potri.003G123750' => 'ptr', 'Potri.005G055401' => 'ptr', 'Potri.005G219700' => 'ptr', 'Potri.005G220000' => 'ptr', 'Potri.008G161901' => 'ptr', 'Potri.008G162000' => 'ptr', 'Potri.008G162400' => 'ptr', 'Potri.010G076900' => 'ptr', 'Pp3c12_9180' => 'ppa', 'Pp3c13_19770' => 'ppa', 'Pp3c14_22950' => 'ppa', 'Pp3c16_12160' => 'ppa', 'Pp3c27_7820' => 'ppa', 'Pp3c2_3490' => 'ppa', 'Pp3c3_23700' => 'ppa', 'Pp3c3_36520' => 'ppa', 'Pp3c4_15250' => 'ppa', 'PRCOL_00007002' => 'pco', 'Prupe.1G030600' => 'ppe', 'Prupe.1G030700' => 'ppe', 'Prupe.6G345200' => 'ppe', 'Prupe.8G230300' => 'ppe', 'Prupe.8G230500' => 'ppe', 'Psat3g059600' => 'psa', 'Psat5g200920' => 'psa', 'Psat6g056440' => 'psa', 'Psat6g057360' => 'psa', 'Psat6g134120' => 'psa', 'Psat6g134160' => 'psa', 'Psat7g008640' => 'psa', 'Psat7g185240' => 'psa', 'PSO017G1330' => 'pso', 'PSO063G6097' => 'pso', 'PSO170G0835' => 'pso', 'PSO170G2499' => 'pso', 'PSO210G5058' => 'pso', 'PSO210G6154' => 'pso', 'PSO585G0031' => 'pso', 'PSO832G0264' => 'pso', 'PSO832G4288' => 'pso', 'QL03p027355' => 'qlo', 'QL03p027430' => 'qlo', 'QL04p081380' => 'qlo', 'QL06p015642' => 'qlo', 'QL06p015650' => 'qlo', 'QL06p015686' => 'qlo', 'QL12p042927' => 'qlo', 'QL93p1863_0035' => 'qlo', 'RcHm_v2.0_Chr3g0450581' => 'rch', 'RcHm_v2.0_Chr4g0390371' => 'rch', 'RcHm_v2.0_Chr4g0390381' => 'rch', 'RcHm_v2.0_Chr4g0390491' => 'rch', 'RcHm_v2.0_Chr4g0390501' => 'rch', 'RcHm_v2.0_Chr6g0289231' => 'rch', 'Rhsim04G0190400' => 'rsi', 'Rhsim04G0190500' => 'rsi', 'Rhsim04G0190600' => 'rsi', 'Rhsim13G0031400' => 'rsi', 'Rhsim13G0165600' => 'rsi', 'RhsimUnG0114600' => 'rsi', 'RhsimUnG0114700' => 'rsi', 'Sabra02G0034800' => 'sbr', 'Sabra02G0035100' => 'sbr', 'Sabra05G0168600' => 'sbr', 'Sabra05G0168800' => 'sbr', 'Sabra08G0123700' => 'sbr', 'Sabra10G0031900' => 'sbr', 'Sabra13G0039000' => 'sbr', 'SalBow2G0782' => 'sbo', 'SalBow2G1403' => 'sbo', 'SalBow4G0074' => 'sbo', 'SalBow4G2635' => 'sbo', 'SalBow5G3010' => 'sbo', 'Sc05g0000870' => 'sci', 'Sc05g0000890' => 'sci', 'Sc13g0005000' => 'sci', 'Sc13g0005030' => 'sci', 'Sc19g0003790' => 'sci', 'Sc19g0003800' => 'sci', 'Sed0003467' => 'sed', 'Sed0009355' => 'sed', 'Sed0009894' => 'sed', 'Sed0011972' => 'sed', 'Sed0021483' => 'sed', 'Sed0021750' => 'sed', 'Sed0026279' => 'sed', 'SEGI_05312' => 'sgi', 'SEGI_10112' => 'sgi', 'SEGI_15835' => 'sgi', 'SEGI_30386' => 'sgi', 'SEGI_34122' => 'sgi', 'SEGI_35063' => 'sgi', 'SGA_v2.0_scaffold101G29794' => 'sas', 'SGA_v2.0_scaffold1G00573' => 'sas', 'SGA_v2.0_scaffold79G25637' => 'sas', 'SGA_v2.0_scaffold88G27283' => 'sas', 'SGA_v2.0_scaffold88G27285' => 'sas', 'SGA_v2.0_scaffold88G27331' => 'sas', 'SHI09937' => 'shi', 'SMO119G0302' => 'smo', 'SMO137G0231' => 'smo', 'SMO367G1151' => 'smo', 'Solyc02g082000.3' => 'sly', 'Solyc06g031670.3' => 'sly', 'Solyc06g053810.3' => 'sly', 'Solyc07g025457.1' => 'sly', 'Solyc08g059740.1' => 'sly', 'Solyc08g059750.3' => 'sly', 'Solyc09g083370.3' => 'sly', 'Solyc12g038950.3' => 'sly', 'Sopen02g026630' => 'spe', 'Sopen06g018930' => 'spe', 'Sopen06g018940' => 'spe', 'Sopen08g009460' => 'spe', 'Sopen09g032290' => 'spe', 'Sp1g03080' => 'spa', 'Sp1g03090' => 'spa', 'Sp1g05480' => 'spa', 'Sp2g07860' => 'spa', 'Sp2g08430' => 'spa', 'Sp2g08440' => 'spa', 'Sp2g26200' => 'spa', 'Sp4g13170' => 'spa', 'Sp6g33840' => 'spa', 'SpUn1204_0010' => 'spa', 'TAR365G0908' => 'tar', 'TAR381G1270' => 'tar', 'TAR381G1651' => 'tar', 'TAR625G1131' => 'tar', 'TAR633G0962' => 'tar', 'TAR633G1729' => 'tar', 'TAR633G1864' => 'tar', 'TAR636G0221' => 'tar', 'TAR636G0314' => 'tar', 'TAR636G3202' => 'tar', 'THA.LOC104800805' => 'tha', 'THA.LOC104801096' => 'tha', 'THA.LOC104801555' => 'tha', 'THA.LOC104808491' => 'tha', 'THA.LOC104808595' => 'tha', 'THA.LOC104815985' => 'tha', 'THA.LOC104822250' => 'tha', 'THA.LOC104826071' => 'tha', 'Thecc.01G265200' => 'tca', 'Thecc.01G265300' => 'tca', 'Thecc.01G265700' => 'tca', 'Thecc.03G109100' => 'tca', 'Thecc.04G245900' => 'tca', 'Thecc.04G246000' => 'tca', 'Thhalv10003334m.g' => 'esa', 'Thhalv10005508m.g' => 'esa', 'Thhalv10005643m.g' => 'esa', 'Thhalv10007316m.g' => 'esa', 'Thhalv10009006m.g' => 'esa', 'Thhalv10009309m.g' => 'esa', 'Thhalv10014917m.g' => 'esa', 'Thhalv10014919m.g' => 'esa', 'Thhalv10015393m.g' => 'esa', 'Thhalv10016515m.g' => 'esa', 'Thhalv10029242m.g' => 'esa', 'TPR.G16654' => 'tpr', 'TPR.G20589' => 'tpr', 'TPR.G23029' => 'tpr', 'TPR.G27731' => 'tpr', 'TPR.G28889' => 'tpr', 'TPR.G28899' => 'tpr', 'TPR.G30846' => 'tpr', 'TPR.G5452' => 'tpr', 'TPR.G5713' => 'tpr', 'TPR.G9046' => 'tpr', 'TPR.G9061' => 'tpr', 'TWI09G1075' => 'twi', 'TWI12G0806' => 'twi', 'TWI18G0108' => 'twi', 'TWI53G1361' => 'twi', 'TWI73G0185' => 'twi', 'TWI73G0427' => 'twi', 'unitig_37.g12001' => 'ugi', 'unitig_747.g21660' => 'ugi', 'unitig_748.g7232' => 'ugi', 'unitig_748.g7315' => 'ugi', 'unitig_85.g27262' => 'ugi', 'unitig_92.g28220' => 'ugi', 'vmacro02632' => 'vma', 'vmacro08410' => 'vma', 'vmacro08411' => 'vma', 'vmacro15407' => 'vma', 'VMungo0251G3619' => 'vmu', 'VMungo0720G1204' => 'vmu', 'VMungo0720G1918' => 'vmu', 'VMungo0720G2387' => 'vmu', 'VMungo0720G2961' => 'vmu', 'VMungo1215G2154' => 'vmu', 'VMungo1383G2411' => 'vmu', 'Zm00001eb051130' => 'zma', 'Zm00001eb116830' => 'zma', 'Zm00001eb116850' => 'zma', 'Zm00001eb151740' => 'zma', 'Zm00001eb292360' => 'zma', 'Zm00001eb301640' => 'zma' ), 'gf_id' => 'HOM05D000856', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000856' ), 'data_identifier' => 'HOM05D000856', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000856', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p00010' => 'bna', 'A03p04160' => 'bna', 'A03p17160' => 'bna', 'A04p23370' => 'bna', 'A05p14860' => 'bna', 'A08p37020' => 'bna', 'A09p08050' => 'bna', 'A09p66800' => 'bna', 'A09p67940' => 'bna', 'A10p02680' => 'bna', 'A10p05320' => 'bna', 'Aa31LG1G20560' => 'aar', 'Aa31LG1G20610' => 'aar', 'Aa31LG1G7810' => 'aar', 'Aa31LG5G3590' => 'aar', 'Aa31LG5G6140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3819' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4683' => 'aag', 'Actinidia04480' => 'ach', 'Actinidia05466' => 'ach', 'Actinidia08445' => 'ach', 'Actinidia21170' => 'ach', 'Actinidia24812' => 'ach', 'Actinidia24951' => 'ach', 'Actinidia40088' => 'ach', 'Ah.02g111660' => 'amhyb', 'Ah.11g048900' => 'amhyb', 'Ah.11g049910' => 'amhyb', 'AL1G13870' => 'aly', 'AL1G13880' => 'aly', 'AL1G16760' => 'aly', 'AL390U10020' => 'aly', 'AL4G25520' => 'aly', 'AL6G19890' => 'aly', 'AL6G19900' => 'aly', 'AL6G19910' => 'aly', 'AL8G40100' => 'aly', 'Aqoxy2G03562' => 'aox', 'Aqoxy5G00316' => 'aox', 'Aqoxy5G00926' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1628KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1H403S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2FU6SJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.882I6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8YRY2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YN1SN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AF70II' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZA8L1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F916KL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHRD8H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KTZ8QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S22EMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8M29T' => 'arhy', 'AT1G04270' => 'ath', 'AT1G04280' => 'ath', 'AT1G06750' => 'ath', 'AT1G33850' => 'ath', 'AT2G30630' => 'ath', 'AT5G09490' => 'ath', 'AT5G09500' => 'ath', 'AT5G09510' => 'ath', 'AT5G43640' => 'ath', 'AT5G63070' => 'ath', 'ATR0605G315' => 'atr', 'Atru.chr11.175' => 'acertr', 'Atru.chr11.653' => 'acertr', 'Atru.chr3.1616' => 'acertr', 'Atru.chr4.2230' => 'acertr', 'Atru.chr4.2232' => 'acertr', 'Atru.chr5.1598' => 'acertr', 'Atru.chr5.1600' => 'acertr', 'Atru.chr5.2188' => 'acertr', 'AUR62008326' => 'cqu', 'AUR62011922' => 'cqu', 'AUR62011924' => 'cqu', 'AUR62021771' => 'cqu', 'AUR62032237' => 'cqu', 'AUR62032240' => 'cqu', 'BcaB01g05572' => 'bca', 'BcaB02g10337' => 'bca', 'BcaB04g19944' => 'bca', 'BcaB05g21548' => 'bca', 'BcaB05g21549' => 'bca', 'BcaB05g23227' => 'bca', 'BcaB06g26256' => 'bca', 'BcaB06g26257' => 'bca', 'BcaB06g28379' => 'bca', 'BcaC02g11159' => 'bca', 'BcaC03g13258' => 'bca', 'BcaC03g13259' => 'bca', 'BcaC05g24456' => 'bca', 'BcaC05g24457' => 'bca', 'BcaC07g36922' => 'bca', 'BcaC07g36923' => 'bca', 'BcaC07g42050' => 'bca', 'BcaC07g42176' => 'bca', 'BcaC07g42195' => 'bca', 'BcaC07g42196' => 'bca', 'BcaNung06674' => 'bca', 'BolC2t06351H' => 'bol', 'BolC2t06352H' => 'bol', 'BolC3t12993H' => 'bol', 'BolC4t23525H' => 'bol', 'BolC4t27475H' => 'bol', 'BolC5t29025H' => 'bol', 'BolC5t29026H' => 'bol', 'BolC8t46898H' => 'bol', 'BolC8t46899H' => 'bol', 'BolC8t52630H' => 'bol', 'BolC8t52765H' => 'bol', 'BolC9t53824H' => 'bol', 'BraA03t09760Z' => 'bra', 'BraA03t10990Z' => 'bra', 'BraA05t20413Z' => 'bra', 'BraA08t35602Z' => 'bra', 'BraA09t36458Z' => 'bra', 'BraA09t42018Z' => 'bra', 'BraA09t42129Z' => 'bra', 'BraA10t42536Z' => 'bra', 'BraA10t42537Z' => 'bra', 'C01p10690' => 'bna', 'C02p03890' => 'bna', 'C02p03900' => 'bna', 'C03p04620' => 'bna', 'C04p19870' => 'bna', 'C04p59670' => 'bna', 'C05p02460' => 'bna', 'C05p02470' => 'bna', 'C08p00980' => 'bna', 'C08p00990' => 'bna', 'C08p51030' => 'bna', 'C08p52360' => 'bna', 'C09p09120' => 'bna', 'CAN.G19.15' => 'can', 'CAN.G251.10' => 'can', 'CAN.G251.9' => 'can', 'CAN.G398.24' => 'can', 'CAN.G410.32' => 'can', 'CAN.G881.2' => 'can', 'CANSAT01G3025' => 'cansat', 'CANSAT78G1211' => 'cansat', 'CANSAT78G1218' => 'cansat', 'CANSAT78G1521' => 'cansat', 'CANSAT78G1670' => 'cansat', 'CARHR003600' => 'chi', 'CARHR003610' => 'chi', 'CARHR006290' => 'chi', 'CARHR006430' => 'chi', 'CARHR124110' => 'chi', 'CARHR203870' => 'chi', 'CARHR203880' => 'chi', 'CARHR203890' => 'chi', 'CARHR276880' => 'chi', 'Carub.0001s0346' => 'cru', 'Carub.0001s0347' => 'cru', 'Carub.0001s0607' => 'cru', 'Carub.0003s2768' => 'cru', 'Carub.0003s2769' => 'cru', 'Carub.0004s1178' => 'cru', 'Carub.0006s0806' => 'cru', 'Carub.0006s0807' => 'cru', 'Carub.0006s0808' => 'cru', 'Carub.0008s0501' => 'cru', 'Carub.0008s2379' => 'cru', 'Ca_08655_v3' => 'car', 'Ca_08922_v3' => 'car', 'Ca_08923_v3' => 'car', 'Ca_09119_v3' => 'car', 'Ca_09703_v3' => 'car', 'Ca_09705_v3' => 'car', 'Ca_09835_v3' => 'car', 'Ca_26403_v3' => 'car', 'Ca_30719_v3' => 'car', 'CBR_g17958' => 'cbr', 'CBR_g40516' => 'cbr', 'Cc00_g05350' => 'ccan', 'Cc01_g18690' => 'ccan', 'Cc03_g04830' => 'ccan', 'Cc03_g04850' => 'ccan', 'CDE02G4469' => 'cde', 'CDE06G0883' => 'cde', 'CDE06G1295' => 'cde', 'CDE06G1390' => 'cde', 'CDE07G0584' => 'cde', 'CDE07G1084' => 'cde', 'CDE08G1259' => 'cde', 'Cfa002341' => 'cfa', 'Cfa024337' => 'cfa', 'Ciclev10004749m.g' => 'ccl', 'Ciclev10006127m.g' => 'ccl', 'Ciclev10019720m.g' => 'ccl', 'Ciclev10022652m.g' => 'ccl', 'CiPaw.01G190400' => 'cil', 'CiPaw.01G190500' => 'cil', 'CiPaw.02G116400' => 'cil', 'CiPaw.02G116500' => 'cil', 'CiPaw.04G183000' => 'cil', 'CiPaw.04G183300' => 'cil', 'ClCG05G004610' => 'cla', 'ClCG05G004620' => 'cla', 'ClCG06G006730' => 'cla', 'ClCG06G006740' => 'cla', 'ClCG11G003690' => 'cla', 'COL.COLO4_08276' => 'col', 'COL.COLO4_08277' => 'col', 'COL.COLO4_15787' => 'col', 'COL.COLO4_15789' => 'col', 'Cpa.g.c44815' => 'cpa', 'Cpa.g.sc52.144' => 'cpa', 'Cpa.g.sc58.46' => 'cpa', 'Cpa.g.sc58.47' => 'cpa', 'Cre08.g360900' => 'cre', 'CsaV3_2G013030' => 'csa', 'CsaV3_2G013050' => 'csa', 'CsaV3_2G015620' => 'csa', 'CsaV3_3G012590' => 'csa', 'CsaV3_3G012600' => 'csa', 'CSS0001641' => 'camsi', 'CSS0008310' => 'camsi', 'CSS0013011' => 'camsi', 'CSS0017147' => 'camsi', 'CSS0022970' => 'camsi', 'CSS0025655' => 'camsi', 'CSS0028665' => 'camsi', 'CSS0029117' => 'camsi', 'CSS0032024' => 'camsi', 'CSS0039681' => 'camsi', 'CSS0046516' => 'camsi', 'CSS0050307' => 'camsi', 'DCAR_005871' => 'dca', 'DCAR_007342' => 'dca', 'DCAR_024228' => 'dca', 'DCAR_027277' => 'dca', 'DCAR_030718' => 'dca', 'Dinv20287' => 'din', 'Dinv22461' => 'din', 'Dinv22464' => 'din', 'Dinv29912' => 'din', 'Dinv29913' => 'din', 'Dinv34580' => 'din', 'Dinv34582' => 'din', 'Dinv44632' => 'din', 'Duzib052G0266' => 'dzi', 'Duzib133G0907' => 'dzi', 'Duzib133G1034' => 'dzi', 'Duzib138G0207' => 'dzi', 'Duzib138G0491' => 'dzi', 'Duzib151G0812' => 'dzi', 'Duzib151G1166' => 'dzi', 'Duzib168G0192' => 'dzi', 'Duzib211G0077' => 'dzi', 'Duzib212G0429' => 'dzi', 'Duzib212G0472' => 'dzi', 'ECA233G2617' => 'eca', 'ECA236G4188' => 'eca', 'ECA240G0936' => 'eca', 'ECA240G1129' => 'eca', 'ECA247G0623' => 'eca', 'EL10Ac5g10451' => 'bvu', 'EL10Ac5g10453' => 'bvu', 'EL10Ac5g10894' => 'bvu', 'Eucgr.H00192' => 'egr', 'Eucgr.H00193' => 'egr', 'Eucgr.H00194' => 'egr', 'Eucgr.J01562' => 'egr', 'Eucgr.K03301' => 'egr', 'FAN02G0632' => 'fan', 'FAN05G5378' => 'fan', 'FAN09G3247' => 'fan', 'FAN12G0435' => 'fan', 'FAN12G2426' => 'fan', 'FAN14G1707' => 'fan', 'FAN14G4725' => 'fan', 'FAN15G2071' => 'fan', 'FAN17G3065' => 'fan', 'FAN19G1376' => 'fan', 'FAN20G0354' => 'fan', 'FAN20G2429' => 'fan', 'FAN20G2658' => 'fan', 'FAN24G2343' => 'fan', 'FAN27G2362' => 'fan', 'FAN28G1765' => 'fan', 'FvH4_1g16020' => 'fve', 'FvH4_2g04890' => 'fve', 'FvH4_2g22270' => 'fve', 'FvH4_4g02630' => 'fve', 'FvH4_4g02640' => 'fve', 'FvH4_6g02650' => 'fve', 'Glyma.02G140600' => 'gma', 'Glyma.03G159900' => 'gma', 'Glyma.05G234800' => 'gma', 'Glyma.07G269600' => 'gma', 'Glyma.08G042300' => 'gma', 'Glyma.10G033500' => 'gma', 'Glyma.10G185200' => 'gma', 'Glyma.17G004300' => 'gma', 'Glyma.19G161900' => 'gma', 'Glyma.20G205100' => 'gma', 'Glyma.20G205200' => 'gma', 'Gohir.A01G139101' => 'ghi', 'Gohir.A02G035600' => 'ghi', 'Gohir.A02G117901' => 'ghi', 'Gohir.A07G210100' => 'ghi', 'Gohir.A07G210200' => 'ghi', 'Gohir.A08G061100' => 'ghi', 'Gohir.A09G223000' => 'ghi', 'Gohir.A09G223100' => 'ghi', 'Gohir.A10G113900' => 'ghi', 'Gohir.A10G114000' => 'ghi', 'Gohir.D02G042300' => 'ghi', 'Gohir.D07G216100' => 'ghi', 'Gohir.D07G216200' => 'ghi', 'Gohir.D08G070400' => 'ghi', 'Gohir.D09G225000' => 'ghi', 'Gohir.D09G225100' => 'ghi', 'Gohir.D10G152300' => 'ghi', 'Gohir.D10G153200' => 'ghi', 'Gohir.D11G133701' => 'ghi', 'Gorai.004G074100' => 'gra', 'Gorai.005G046800' => 'gra', 'Gorai.006G246500' => 'gra', 'Gorai.006G246600' => 'gra', 'Gorai.007G142900' => 'gra', 'Gorai.011G171000' => 'gra', 'Gorai.011G171100' => 'gra', 'Gorai.013G104300' => 'gra', 'Gorai.013G104400' => 'gra', 'GSVIVG01000754001' => 'vvi', 'GSVIVG01000756001' => 'vvi', 'GSVIVG01010903001' => 'vvi', 'GSVIVG01017623001' => 'vvi', 'GSVIVG01018113001' => 'vvi', 'GSVIVG01018116001' => 'vvi', 'GSVIVG01018118001' => 'vvi', 'HanXRQChr03g0076211' => 'han', 'HanXRQChr03g0092431' => 'han', 'HanXRQChr03g0092441' => 'han', 'HanXRQChr03g0092591' => 'han', 'HanXRQChr03g0092671' => 'han', 'HanXRQChr03g0092681' => 'han', 'HanXRQChr03g0092691' => 'han', 'HanXRQChr03g0092701' => 'han', 'HanXRQChr03g0092721' => 'han', 'HanXRQChr03g0092731' => 'han', 'HanXRQChr04g0113681' => 'han', 'HanXRQChr10g0281371' => 'han', 'HanXRQChr11g0337141' => 'han', 'HanXRQChr13g0424521' => 'han', 'HanXRQChr13g0424531' => 'han', 'HanXRQChr13g0424541' => 'han', 'HanXRQChr16g0498221' => 'han', 'Haze_04377' => 'cav', 'Haze_11298' => 'cav', 'Haze_24547' => 'cav', 'Haze_24550' => 'cav', 'Haze_26587' => 'cav', 'Hma1.2p1_0650F.1_g195410' => 'hma', 'Hma1.2p1_0893F.1_g233470' => 'hma', 'HPP92_006508' => 'vpl', 'HPP92_024780' => 'vpl', 'Hund02688' => 'sun', 'Hund09380' => 'sun', 'Hund09381' => 'sun', 'Hund09832' => 'sun', 'Hund09833' => 'sun', 'Hund11351' => 'sun', 'Hund11513' => 'sun', 'Lalb_Chr06g0162591' => 'lal', 'Lalb_Chr06g0162601' => 'lal', 'Lalb_Chr06g0169321' => 'lal', 'Lalb_Chr09g0330951' => 'lal', 'Lalb_Chr16g0387631' => 'lal', 'Lalb_Chr21g0306241' => 'lal', 'Lalb_Chr25g0290051' => 'lal', 'Lalb_Chr25g0290061' => 'lal', 'Lalb_Chr25g0290071' => 'lal', 'Lj1g0003876' => 'lja', 'Lj1P1207T36' => 'lonja', 'Lj2C1156G12' => 'lonja', 'Lj3A793G39' => 'lonja', 'Lj3C580G2' => 'lonja', 'Lj3C780G2' => 'lonja', 'Lj3C780T4' => 'lonja', 'Lj3C793G9' => 'lonja', 'Lj4g0012960' => 'lja', 'Lj5g0021252' => 'lja', 'Lj5g0021484' => 'lja', 'Lj5g0024528' => 'lja', 'Lj6A399T12' => 'lonja', 'Lj6A656G65' => 'lonja', 'Lsat_1_v5_gn_3_125500' => 'lsa', 'Lsat_1_v5_gn_3_125540' => 'lsa', 'Lsat_1_v5_gn_5_72701' => 'lsa', 'Lsat_1_v5_gn_8_91560' => 'lsa', 'Lsat_1_v5_gn_9_9640' => 'lsa', 'Manes.01G200600' => 'mes', 'Manes.01G200700' => 'mes', 'Manes.03G168900' => 'mes', 'Manes.03G169000' => 'mes', 'Manes.05G085801' => 'mes', 'Manes.05G086200' => 'mes', 'Manes.15G036700' => 'mes', 'Manes.15G036900' => 'mes', 'Mapoly0004s0172' => 'mpo', 'Mapoly0023s0001' => 'mpo', 'Mapoly0142s0012' => 'mpo', 'MBI01_g32854_MAGBIO' => 'mbi', 'MBI11_g24427_MAGBIO' => 'mbi', 'MBI11_g47319_MAGBIO' => 'mbi', 'MCO01G433' => 'mco', 'MD00G1187800' => 'mdo', 'MD04G1226500' => 'mdo', 'MD05G1203900' => 'mdo', 'MD10G1191100' => 'mdo', 'MD12G1243500' => 'mdo', 'MD13G1207000' => 'mdo', 'MD13G1207100' => 'mdo', 'MD16G1208600' => 'mdo', 'Medtr1g050352' => 'mtr', 'Medtr1g070385' => 'mtr', 'Medtr1g070450' => 'mtr', 'Medtr1g075200' => 'mtr', 'Medtr1g075250' => 'mtr', 'Medtr1g075260' => 'mtr', 'Medtr1g475250' => 'mtr', 'Medtr4g075450' => 'mtr', 'Medtr7g096300' => 'mtr', 'Medtr8g105110' => 'mtr', 'MELO3C006470.2' => 'cme', 'MELO3C006471.2' => 'cme', 'MELO3C020772.2' => 'cme', 'MELO3C026780.2' => 'cme', 'MELO3C026781.2' => 'cme', 'Migut.D00390' => 'egut', 'Migut.G00435' => 'egut', 'Migut.G00436' => 'egut', 'Migut.G00718' => 'egut', 'MSTRG.21891' => 'ama', 'MSTRG.26910' => 'ama', 'MSTRG.4099' => 'ama', 'MSTRG.9925' => 'ama', 'Nitab4.5_0000165g0010' => 'nta', 'Nitab4.5_0000209g0180' => 'nta', 'Nitab4.5_0000244g0440' => 'nta', 'Nitab4.5_0000525g0220' => 'nta', 'Nitab4.5_0001597g0020' => 'nta', 'Nitab4.5_0001878g0040' => 'nta', 'Nitab4.5_0001878g0060' => 'nta', 'Nitab4.5_0002838g0100' => 'nta', 'Nitab4.5_0002838g0120' => 'nta', 'Nitab4.5_0004798g0030' => 'nta', 'Nitab4.5_0005420g0010' => 'nta', 'Nitab4.5_0005507g0010' => 'nta', 'Nitab4.5_0005574g0020' => 'nta', 'Nitab4.5_0005838g0010' => 'nta', 'Nitab4.5_0010580g0020' => 'nta', 'Nn1g02599' => 'nnu', 'Nn1g02608' => 'nnu', 'Nn3g17742' => 'nnu', 'Nn3g19534' => 'nnu', 'Nn3g19535' => 'nnu', 'Oeu008790.1' => 'oeu', 'Oeu008792.1' => 'oeu', 'Oeu032590.1' => 'oeu', 'Oeu035349.1' => 'oeu', 'Oeu049791.1' => 'oeu', 'Os01g0774500' => 'osa', 'Os03g0628800' => 'osa', 'Os03g0798600' => 'osa', 'Os05g0508800' => 'osa', 'Peaxi162Scf00036g02018' => 'pax', 'Peaxi162Scf00578g00032' => 'pax', 'Peaxi162Scf00578g00317' => 'pax', 'Peaxi162Scf00785g00114' => 'pax', 'Peaxi162Scf00813g00119' => 'pax', 'Peaxi162Scf00906g00227' => 'pax', 'PGR004G0875' => 'pgr', 'PGR004G2424' => 'pgr', 'PGR031G1239' => 'pgr', 'PGR031G2474' => 'pgr', 'PGR044G0423' => 'pgr', 'PGSC0003DMG400001128' => 'stu', 'PGSC0003DMG400007336' => 'stu', 'PGSC0003DMG400016318' => 'stu', 'PGSC0003DMG400016319' => 'stu', 'PGSC0003DMG400018074' => 'stu', 'Phvul.001G157700' => 'pvu', 'Phvul.002G148550' => 'pvu', 'Phvul.002G320200' => 'pvu', 'Phvul.003G089200' => 'pvu', 'Phvul.007G126000' => 'pvu', 'Phvul.007G126100' => 'pvu', 'Phvul.007G178000' => 'pvu', 'Phvul.007G178200' => 'pvu', 'Potri.002G043000' => 'ptr', 'Potri.002G043200' => 'ptr', 'Potri.003G123750' => 'ptr', 'Potri.005G055401' => 'ptr', 'Potri.005G219700' => 'ptr', 'Potri.005G220000' => 'ptr', 'Potri.008G161901' => 'ptr', 'Potri.008G162000' => 'ptr', 'Potri.008G162400' => 'ptr', 'Potri.010G076900' => 'ptr', 'Pp3c12_9180' => 'ppa', 'Pp3c13_19770' => 'ppa', 'Pp3c14_22950' => 'ppa', 'Pp3c16_12160' => 'ppa', 'Pp3c27_7820' => 'ppa', 'Pp3c2_3490' => 'ppa', 'Pp3c3_23700' => 'ppa', 'Pp3c3_36520' => 'ppa', 'Pp3c4_15250' => 'ppa', 'PRCOL_00007002' => 'pco', 'Prupe.1G030600' => 'ppe', 'Prupe.1G030700' => 'ppe', 'Prupe.6G345200' => 'ppe', 'Prupe.8G230300' => 'ppe', 'Prupe.8G230500' => 'ppe', 'Psat3g059600' => 'psa', 'Psat5g200920' => 'psa', 'Psat6g056440' => 'psa', 'Psat6g057360' => 'psa', 'Psat6g134120' => 'psa', 'Psat6g134160' => 'psa', 'Psat7g008640' => 'psa', 'Psat7g185240' => 'psa', 'PSO017G1330' => 'pso', 'PSO063G6097' => 'pso', 'PSO170G0835' => 'pso', 'PSO170G2499' => 'pso', 'PSO210G5058' => 'pso', 'PSO210G6154' => 'pso', 'PSO585G0031' => 'pso', 'PSO832G0264' => 'pso', 'PSO832G4288' => 'pso', 'QL03p027355' => 'qlo', 'QL03p027430' => 'qlo', 'QL04p081380' => 'qlo', 'QL06p015642' => 'qlo', 'QL06p015650' => 'qlo', 'QL06p015686' => 'qlo', 'QL12p042927' => 'qlo', 'QL93p1863_0035' => 'qlo', 'RcHm_v2.0_Chr3g0450581' => 'rch', 'RcHm_v2.0_Chr4g0390371' => 'rch', 'RcHm_v2.0_Chr4g0390381' => 'rch', 'RcHm_v2.0_Chr4g0390491' => 'rch', 'RcHm_v2.0_Chr4g0390501' => 'rch', 'RcHm_v2.0_Chr6g0289231' => 'rch', 'Rhsim04G0190400' => 'rsi', 'Rhsim04G0190500' => 'rsi', 'Rhsim04G0190600' => 'rsi', 'Rhsim13G0031400' => 'rsi', 'Rhsim13G0165600' => 'rsi', 'RhsimUnG0114600' => 'rsi', 'RhsimUnG0114700' => 'rsi', 'Sabra02G0034800' => 'sbr', 'Sabra02G0035100' => 'sbr', 'Sabra05G0168600' => 'sbr', 'Sabra05G0168800' => 'sbr', 'Sabra08G0123700' => 'sbr', 'Sabra10G0031900' => 'sbr', 'Sabra13G0039000' => 'sbr', 'SalBow2G0782' => 'sbo', 'SalBow2G1403' => 'sbo', 'SalBow4G0074' => 'sbo', 'SalBow4G2635' => 'sbo', 'SalBow5G3010' => 'sbo', 'Sc05g0000870' => 'sci', 'Sc05g0000890' => 'sci', 'Sc13g0005000' => 'sci', 'Sc13g0005030' => 'sci', 'Sc19g0003790' => 'sci', 'Sc19g0003800' => 'sci', 'Sed0003467' => 'sed', 'Sed0009355' => 'sed', 'Sed0009894' => 'sed', 'Sed0011972' => 'sed', 'Sed0021483' => 'sed', 'Sed0021750' => 'sed', 'Sed0026279' => 'sed', 'SEGI_05312' => 'sgi', 'SEGI_10112' => 'sgi', 'SEGI_15835' => 'sgi', 'SEGI_30386' => 'sgi', 'SEGI_34122' => 'sgi', 'SEGI_35063' => 'sgi', 'SGA_v2.0_scaffold101G29794' => 'sas', 'SGA_v2.0_scaffold1G00573' => 'sas', 'SGA_v2.0_scaffold79G25637' => 'sas', 'SGA_v2.0_scaffold88G27283' => 'sas', 'SGA_v2.0_scaffold88G27285' => 'sas', 'SGA_v2.0_scaffold88G27331' => 'sas', 'SHI09937' => 'shi', 'SMO119G0302' => 'smo', 'SMO137G0231' => 'smo', 'SMO367G1151' => 'smo', 'Solyc02g082000.3' => 'sly', 'Solyc06g031670.3' => 'sly', 'Solyc06g053810.3' => 'sly', 'Solyc07g025457.1' => 'sly', 'Solyc08g059740.1' => 'sly', 'Solyc08g059750.3' => 'sly', 'Solyc09g083370.3' => 'sly', 'Solyc12g038950.3' => 'sly', 'Sopen02g026630' => 'spe', 'Sopen06g018930' => 'spe', 'Sopen06g018940' => 'spe', 'Sopen08g009460' => 'spe', 'Sopen09g032290' => 'spe', 'Sp1g03080' => 'spa', 'Sp1g03090' => 'spa', 'Sp1g05480' => 'spa', 'Sp2g07860' => 'spa', 'Sp2g08430' => 'spa', 'Sp2g08440' => 'spa', 'Sp2g26200' => 'spa', 'Sp4g13170' => 'spa', 'Sp6g33840' => 'spa', 'SpUn1204_0010' => 'spa', 'TAR365G0908' => 'tar', 'TAR381G1270' => 'tar', 'TAR381G1651' => 'tar', 'TAR625G1131' => 'tar', 'TAR633G0962' => 'tar', 'TAR633G1729' => 'tar', 'TAR633G1864' => 'tar', 'TAR636G0221' => 'tar', 'TAR636G0314' => 'tar', 'TAR636G3202' => 'tar', 'THA.LOC104800805' => 'tha', 'THA.LOC104801096' => 'tha', 'THA.LOC104801555' => 'tha', 'THA.LOC104808491' => 'tha', 'THA.LOC104808595' => 'tha', 'THA.LOC104815985' => 'tha', 'THA.LOC104822250' => 'tha', 'THA.LOC104826071' => 'tha', 'Thecc.01G265200' => 'tca', 'Thecc.01G265300' => 'tca', 'Thecc.01G265700' => 'tca', 'Thecc.03G109100' => 'tca', 'Thecc.04G245900' => 'tca', 'Thecc.04G246000' => 'tca', 'Thhalv10003334m.g' => 'esa', 'Thhalv10005508m.g' => 'esa', 'Thhalv10005643m.g' => 'esa', 'Thhalv10007316m.g' => 'esa', 'Thhalv10009006m.g' => 'esa', 'Thhalv10009309m.g' => 'esa', 'Thhalv10014917m.g' => 'esa', 'Thhalv10014919m.g' => 'esa', 'Thhalv10015393m.g' => 'esa', 'Thhalv10016515m.g' => 'esa', 'Thhalv10029242m.g' => 'esa', 'TPR.G16654' => 'tpr', 'TPR.G20589' => 'tpr', 'TPR.G23029' => 'tpr', 'TPR.G27731' => 'tpr', 'TPR.G28889' => 'tpr', 'TPR.G28899' => 'tpr', 'TPR.G30846' => 'tpr', 'TPR.G5452' => 'tpr', 'TPR.G5713' => 'tpr', 'TPR.G9046' => 'tpr', 'TPR.G9061' => 'tpr', 'TWI09G1075' => 'twi', 'TWI12G0806' => 'twi', 'TWI18G0108' => 'twi', 'TWI53G1361' => 'twi', 'TWI73G0185' => 'twi', 'TWI73G0427' => 'twi', 'unitig_37.g12001' => 'ugi', 'unitig_747.g21660' => 'ugi', 'unitig_748.g7232' => 'ugi', 'unitig_748.g7315' => 'ugi', 'unitig_85.g27262' => 'ugi', 'unitig_92.g28220' => 'ugi', 'vmacro02632' => 'vma', 'vmacro08410' => 'vma', 'vmacro08411' => 'vma', 'vmacro15407' => 'vma', 'VMungo0251G3619' => 'vmu', 'VMungo0720G1204' => 'vmu', 'VMungo0720G1918' => 'vmu', 'VMungo0720G2387' => 'vmu', 'VMungo0720G2961' => 'vmu', 'VMungo1215G2154' => 'vmu', 'VMungo1383G2411' => 'vmu', 'Zm00001eb051130' => 'zma', 'Zm00001eb116830' => 'zma', 'Zm00001eb116850' => 'zma', 'Zm00001eb151740' => 'zma', 'Zm00001eb292360' => 'zma', 'Zm00001eb301640' => 'zma' ) $gf_id = 'HOM05D000856' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000856' ) $data_identifier = 'HOM05D000856' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 13, 'ath' => (int) 10, 'atr' => (int) 1, 'acertr' => (int) 8, 'cqu' => (int) 6, 'bca' => (int) 21, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 11, 'car' => (int) 9, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 8, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 5, 'fan' => (int) 16, 'fve' => (int) 6, 'gma' => (int) 11, 'ghi' => (int) 19, 'gra' => (int) 9, 'vvi' => (int) 7, 'han' => (int) 17, 'cav' => (int) 5, 'hma' => (int) 2, 'vpl' => (int) 2, 'sun' => (int) 7, 'lal' => (int) 9, 'lja' => (int) 5, 'lonja' => (int) 9, 'lsa' => (int) 5, 'mes' => (int) 8, 'mpo' => (int) 3, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 10, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 15, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 9, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 9, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 6, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 5, 'spa' => (int) 10, 'tar' => (int) 10, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 11, 'tpr' => (int) 11, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 4, 'vmu' => (int) 7, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb301640' $species_info = array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ) $local_species = 'cla' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000856', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p00010' => 'bna', 'A03p04160' => 'bna', 'A03p17160' => 'bna', 'A04p23370' => 'bna', 'A05p14860' => 'bna', 'A08p37020' => 'bna', 'A09p08050' => 'bna', 'A09p66800' => 'bna', 'A09p67940' => 'bna', 'A10p02680' => 'bna', 'A10p05320' => 'bna', 'Aa31LG1G20560' => 'aar', 'Aa31LG1G20610' => 'aar', 'Aa31LG1G7810' => 'aar', 'Aa31LG5G3590' => 'aar', 'Aa31LG5G6140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3819' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4683' => 'aag', 'Actinidia04480' => 'ach', 'Actinidia05466' => 'ach', 'Actinidia08445' => 'ach', 'Actinidia21170' => 'ach', 'Actinidia24812' => 'ach', 'Actinidia24951' => 'ach', 'Actinidia40088' => 'ach', 'Ah.02g111660' => 'amhyb', 'Ah.11g048900' => 'amhyb', 'Ah.11g049910' => 'amhyb', 'AL1G13870' => 'aly', 'AL1G13880' => 'aly', 'AL1G16760' => 'aly', 'AL390U10020' => 'aly', 'AL4G25520' => 'aly', 'AL6G19890' => 'aly', 'AL6G19900' => 'aly', 'AL6G19910' => 'aly', 'AL8G40100' => 'aly', 'Aqoxy2G03562' => 'aox', 'Aqoxy5G00316' => 'aox', 'Aqoxy5G00926' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1628KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1H403S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2FU6SJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.882I6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8YRY2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YN1SN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AF70II' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZA8L1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F916KL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHRD8H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KTZ8QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S22EMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8M29T' => 'arhy', 'AT1G04270' => 'ath', 'AT1G04280' => 'ath', 'AT1G06750' => 'ath', 'AT1G33850' => 'ath', 'AT2G30630' => 'ath', 'AT5G09490' => 'ath', 'AT5G09500' => 'ath', 'AT5G09510' => 'ath', 'AT5G43640' => 'ath', 'AT5G63070' => 'ath', 'ATR0605G315' => 'atr', 'Atru.chr11.175' => 'acertr', 'Atru.chr11.653' => 'acertr', 'Atru.chr3.1616' => 'acertr', 'Atru.chr4.2230' => 'acertr', 'Atru.chr4.2232' => 'acertr', 'Atru.chr5.1598' => 'acertr', 'Atru.chr5.1600' => 'acertr', 'Atru.chr5.2188' => 'acertr', 'AUR62008326' => 'cqu', 'AUR62011922' => 'cqu', 'AUR62011924' => 'cqu', 'AUR62021771' => 'cqu', 'AUR62032237' => 'cqu', 'AUR62032240' => 'cqu', 'BcaB01g05572' => 'bca', 'BcaB02g10337' => 'bca', 'BcaB04g19944' => 'bca', 'BcaB05g21548' => 'bca', 'BcaB05g21549' => 'bca', 'BcaB05g23227' => 'bca', 'BcaB06g26256' => 'bca', 'BcaB06g26257' => 'bca', 'BcaB06g28379' => 'bca', 'BcaC02g11159' => 'bca', 'BcaC03g13258' => 'bca', 'BcaC03g13259' => 'bca', 'BcaC05g24456' => 'bca', 'BcaC05g24457' => 'bca', 'BcaC07g36922' => 'bca', 'BcaC07g36923' => 'bca', 'BcaC07g42050' => 'bca', 'BcaC07g42176' => 'bca', 'BcaC07g42195' => 'bca', 'BcaC07g42196' => 'bca', 'BcaNung06674' => 'bca', 'BolC2t06351H' => 'bol', 'BolC2t06352H' => 'bol', 'BolC3t12993H' => 'bol', 'BolC4t23525H' => 'bol', 'BolC4t27475H' => 'bol', 'BolC5t29025H' => 'bol', 'BolC5t29026H' => 'bol', 'BolC8t46898H' => 'bol', 'BolC8t46899H' => 'bol', 'BolC8t52630H' => 'bol', 'BolC8t52765H' => 'bol', 'BolC9t53824H' => 'bol', 'BraA03t09760Z' => 'bra', 'BraA03t10990Z' => 'bra', 'BraA05t20413Z' => 'bra', 'BraA08t35602Z' => 'bra', 'BraA09t36458Z' => 'bra', 'BraA09t42018Z' => 'bra', 'BraA09t42129Z' => 'bra', 'BraA10t42536Z' => 'bra', 'BraA10t42537Z' => 'bra', 'C01p10690' => 'bna', 'C02p03890' => 'bna', 'C02p03900' => 'bna', 'C03p04620' => 'bna', 'C04p19870' => 'bna', 'C04p59670' => 'bna', 'C05p02460' => 'bna', 'C05p02470' => 'bna', 'C08p00980' => 'bna', 'C08p00990' => 'bna', 'C08p51030' => 'bna', 'C08p52360' => 'bna', 'C09p09120' => 'bna', 'CAN.G19.15' => 'can', 'CAN.G251.10' => 'can', 'CAN.G251.9' => 'can', 'CAN.G398.24' => 'can', 'CAN.G410.32' => 'can', 'CAN.G881.2' => 'can', 'CANSAT01G3025' => 'cansat', 'CANSAT78G1211' => 'cansat', 'CANSAT78G1218' => 'cansat', 'CANSAT78G1521' => 'cansat', 'CANSAT78G1670' => 'cansat', 'CARHR003600' => 'chi', 'CARHR003610' => 'chi', 'CARHR006290' => 'chi', 'CARHR006430' => 'chi', 'CARHR124110' => 'chi', 'CARHR203870' => 'chi', 'CARHR203880' => 'chi', 'CARHR203890' => 'chi', 'CARHR276880' => 'chi', 'Carub.0001s0346' => 'cru', 'Carub.0001s0347' => 'cru', 'Carub.0001s0607' => 'cru', 'Carub.0003s2768' => 'cru', 'Carub.0003s2769' => 'cru', 'Carub.0004s1178' => 'cru', 'Carub.0006s0806' => 'cru', 'Carub.0006s0807' => 'cru', 'Carub.0006s0808' => 'cru', 'Carub.0008s0501' => 'cru', 'Carub.0008s2379' => 'cru', 'Ca_08655_v3' => 'car', 'Ca_08922_v3' => 'car', 'Ca_08923_v3' => 'car', 'Ca_09119_v3' => 'car', 'Ca_09703_v3' => 'car', 'Ca_09705_v3' => 'car', 'Ca_09835_v3' => 'car', 'Ca_26403_v3' => 'car', 'Ca_30719_v3' => 'car', 'CBR_g17958' => 'cbr', 'CBR_g40516' => 'cbr', 'Cc00_g05350' => 'ccan', 'Cc01_g18690' => 'ccan', 'Cc03_g04830' => 'ccan', 'Cc03_g04850' => 'ccan', 'CDE02G4469' => 'cde', 'CDE06G0883' => 'cde', 'CDE06G1295' => 'cde', 'CDE06G1390' => 'cde', 'CDE07G0584' => 'cde', 'CDE07G1084' => 'cde', 'CDE08G1259' => 'cde', 'Cfa002341' => 'cfa', 'Cfa024337' => 'cfa', 'Ciclev10004749m.g' => 'ccl', 'Ciclev10006127m.g' => 'ccl', 'Ciclev10019720m.g' => 'ccl', 'Ciclev10022652m.g' => 'ccl', 'CiPaw.01G190400' => 'cil', 'CiPaw.01G190500' => 'cil', 'CiPaw.02G116400' => 'cil', 'CiPaw.02G116500' => 'cil', 'CiPaw.04G183000' => 'cil', 'CiPaw.04G183300' => 'cil', 'ClCG05G004610' => 'cla', 'ClCG05G004620' => 'cla', 'ClCG06G006730' => 'cla', 'ClCG06G006740' => 'cla', 'ClCG11G003690' => 'cla', 'COL.COLO4_08276' => 'col', 'COL.COLO4_08277' => 'col', 'COL.COLO4_15787' => 'col', 'COL.COLO4_15789' => 'col', 'Cpa.g.c44815' => 'cpa', 'Cpa.g.sc52.144' => 'cpa', 'Cpa.g.sc58.46' => 'cpa', 'Cpa.g.sc58.47' => 'cpa', 'Cre08.g360900' => 'cre', 'CsaV3_2G013030' => 'csa', 'CsaV3_2G013050' => 'csa', 'CsaV3_2G015620' => 'csa', 'CsaV3_3G012590' => 'csa', 'CsaV3_3G012600' => 'csa', 'CSS0001641' => 'camsi', 'CSS0008310' => 'camsi', 'CSS0013011' => 'camsi', 'CSS0017147' => 'camsi', 'CSS0022970' => 'camsi', 'CSS0025655' => 'camsi', 'CSS0028665' => 'camsi', 'CSS0029117' => 'camsi', 'CSS0032024' => 'camsi', 'CSS0039681' => 'camsi', 'CSS0046516' => 'camsi', 'CSS0050307' => 'camsi', 'DCAR_005871' => 'dca', 'DCAR_007342' => 'dca', 'DCAR_024228' => 'dca', 'DCAR_027277' => 'dca', 'DCAR_030718' => 'dca', 'Dinv20287' => 'din', 'Dinv22461' => 'din', 'Dinv22464' => 'din', 'Dinv29912' => 'din', 'Dinv29913' => 'din', 'Dinv34580' => 'din', 'Dinv34582' => 'din', 'Dinv44632' => 'din', 'Duzib052G0266' => 'dzi', 'Duzib133G0907' => 'dzi', 'Duzib133G1034' => 'dzi', 'Duzib138G0207' => 'dzi', 'Duzib138G0491' => 'dzi', 'Duzib151G0812' => 'dzi', 'Duzib151G1166' => 'dzi', 'Duzib168G0192' => 'dzi', 'Duzib211G0077' => 'dzi', 'Duzib212G0429' => 'dzi', 'Duzib212G0472' => 'dzi', 'ECA233G2617' => 'eca', 'ECA236G4188' => 'eca', 'ECA240G0936' => 'eca', 'ECA240G1129' => 'eca', 'ECA247G0623' => 'eca', 'EL10Ac5g10451' => 'bvu', 'EL10Ac5g10453' => 'bvu', 'EL10Ac5g10894' => 'bvu', 'Eucgr.H00192' => 'egr', 'Eucgr.H00193' => 'egr', 'Eucgr.H00194' => 'egr', 'Eucgr.J01562' => 'egr', 'Eucgr.K03301' => 'egr', 'FAN02G0632' => 'fan', 'FAN05G5378' => 'fan', 'FAN09G3247' => 'fan', 'FAN12G0435' => 'fan', 'FAN12G2426' => 'fan', 'FAN14G1707' => 'fan', 'FAN14G4725' => 'fan', 'FAN15G2071' => 'fan', 'FAN17G3065' => 'fan', 'FAN19G1376' => 'fan', 'FAN20G0354' => 'fan', 'FAN20G2429' => 'fan', 'FAN20G2658' => 'fan', 'FAN24G2343' => 'fan', 'FAN27G2362' => 'fan', 'FAN28G1765' => 'fan', 'FvH4_1g16020' => 'fve', 'FvH4_2g04890' => 'fve', 'FvH4_2g22270' => 'fve', 'FvH4_4g02630' => 'fve', 'FvH4_4g02640' => 'fve', 'FvH4_6g02650' => 'fve', 'Glyma.02G140600' => 'gma', 'Glyma.03G159900' => 'gma', 'Glyma.05G234800' => 'gma', 'Glyma.07G269600' => 'gma', 'Glyma.08G042300' => 'gma', 'Glyma.10G033500' => 'gma', 'Glyma.10G185200' => 'gma', 'Glyma.17G004300' => 'gma', 'Glyma.19G161900' => 'gma', 'Glyma.20G205100' => 'gma', 'Glyma.20G205200' => 'gma', 'Gohir.A01G139101' => 'ghi', 'Gohir.A02G035600' => 'ghi', 'Gohir.A02G117901' => 'ghi', 'Gohir.A07G210100' => 'ghi', 'Gohir.A07G210200' => 'ghi', 'Gohir.A08G061100' => 'ghi', 'Gohir.A09G223000' => 'ghi', 'Gohir.A09G223100' => 'ghi', 'Gohir.A10G113900' => 'ghi', 'Gohir.A10G114000' => 'ghi', 'Gohir.D02G042300' => 'ghi', 'Gohir.D07G216100' => 'ghi', 'Gohir.D07G216200' => 'ghi', 'Gohir.D08G070400' => 'ghi', 'Gohir.D09G225000' => 'ghi', 'Gohir.D09G225100' => 'ghi', 'Gohir.D10G152300' => 'ghi', 'Gohir.D10G153200' => 'ghi', 'Gohir.D11G133701' => 'ghi', 'Gorai.004G074100' => 'gra', 'Gorai.005G046800' => 'gra', 'Gorai.006G246500' => 'gra', 'Gorai.006G246600' => 'gra', 'Gorai.007G142900' => 'gra', 'Gorai.011G171000' => 'gra', 'Gorai.011G171100' => 'gra', 'Gorai.013G104300' => 'gra', 'Gorai.013G104400' => 'gra', 'GSVIVG01000754001' => 'vvi', 'GSVIVG01000756001' => 'vvi', 'GSVIVG01010903001' => 'vvi', 'GSVIVG01017623001' => 'vvi', 'GSVIVG01018113001' => 'vvi', 'GSVIVG01018116001' => 'vvi', 'GSVIVG01018118001' => 'vvi', 'HanXRQChr03g0076211' => 'han', 'HanXRQChr03g0092431' => 'han', 'HanXRQChr03g0092441' => 'han', 'HanXRQChr03g0092591' => 'han', 'HanXRQChr03g0092671' => 'han', 'HanXRQChr03g0092681' => 'han', 'HanXRQChr03g0092691' => 'han', 'HanXRQChr03g0092701' => 'han', 'HanXRQChr03g0092721' => 'han', 'HanXRQChr03g0092731' => 'han', 'HanXRQChr04g0113681' => 'han', 'HanXRQChr10g0281371' => 'han', 'HanXRQChr11g0337141' => 'han', 'HanXRQChr13g0424521' => 'han', 'HanXRQChr13g0424531' => 'han', 'HanXRQChr13g0424541' => 'han', 'HanXRQChr16g0498221' => 'han', 'Haze_04377' => 'cav', 'Haze_11298' => 'cav', 'Haze_24547' => 'cav', 'Haze_24550' => 'cav', 'Haze_26587' => 'cav', 'Hma1.2p1_0650F.1_g195410' => 'hma', 'Hma1.2p1_0893F.1_g233470' => 'hma', 'HPP92_006508' => 'vpl', 'HPP92_024780' => 'vpl', 'Hund02688' => 'sun', 'Hund09380' => 'sun', 'Hund09381' => 'sun', 'Hund09832' => 'sun', 'Hund09833' => 'sun', 'Hund11351' => 'sun', 'Hund11513' => 'sun', 'Lalb_Chr06g0162591' => 'lal', 'Lalb_Chr06g0162601' => 'lal', 'Lalb_Chr06g0169321' => 'lal', 'Lalb_Chr09g0330951' => 'lal', 'Lalb_Chr16g0387631' => 'lal', 'Lalb_Chr21g0306241' => 'lal', 'Lalb_Chr25g0290051' => 'lal', 'Lalb_Chr25g0290061' => 'lal', 'Lalb_Chr25g0290071' => 'lal', 'Lj1g0003876' => 'lja', 'Lj1P1207T36' => 'lonja', 'Lj2C1156G12' => 'lonja', 'Lj3A793G39' => 'lonja', 'Lj3C580G2' => 'lonja', 'Lj3C780G2' => 'lonja', 'Lj3C780T4' => 'lonja', 'Lj3C793G9' => 'lonja', 'Lj4g0012960' => 'lja', 'Lj5g0021252' => 'lja', 'Lj5g0021484' => 'lja', 'Lj5g0024528' => 'lja', 'Lj6A399T12' => 'lonja', 'Lj6A656G65' => 'lonja', 'Lsat_1_v5_gn_3_125500' => 'lsa', 'Lsat_1_v5_gn_3_125540' => 'lsa', 'Lsat_1_v5_gn_5_72701' => 'lsa', 'Lsat_1_v5_gn_8_91560' => 'lsa', 'Lsat_1_v5_gn_9_9640' => 'lsa', 'Manes.01G200600' => 'mes', 'Manes.01G200700' => 'mes', 'Manes.03G168900' => 'mes', 'Manes.03G169000' => 'mes', 'Manes.05G085801' => 'mes', 'Manes.05G086200' => 'mes', 'Manes.15G036700' => 'mes', 'Manes.15G036900' => 'mes', 'Mapoly0004s0172' => 'mpo', 'Mapoly0023s0001' => 'mpo', 'Mapoly0142s0012' => 'mpo', 'MBI01_g32854_MAGBIO' => 'mbi', 'MBI11_g24427_MAGBIO' => 'mbi', 'MBI11_g47319_MAGBIO' => 'mbi', 'MCO01G433' => 'mco', 'MD00G1187800' => 'mdo', 'MD04G1226500' => 'mdo', 'MD05G1203900' => 'mdo', 'MD10G1191100' => 'mdo', 'MD12G1243500' => 'mdo', 'MD13G1207000' => 'mdo', 'MD13G1207100' => 'mdo', 'MD16G1208600' => 'mdo', 'Medtr1g050352' => 'mtr', 'Medtr1g070385' => 'mtr', 'Medtr1g070450' => 'mtr', 'Medtr1g075200' => 'mtr', 'Medtr1g075250' => 'mtr', 'Medtr1g075260' => 'mtr', 'Medtr1g475250' => 'mtr', 'Medtr4g075450' => 'mtr', 'Medtr7g096300' => 'mtr', 'Medtr8g105110' => 'mtr', 'MELO3C006470.2' => 'cme', 'MELO3C006471.2' => 'cme', 'MELO3C020772.2' => 'cme', 'MELO3C026780.2' => 'cme', 'MELO3C026781.2' => 'cme', 'Migut.D00390' => 'egut', 'Migut.G00435' => 'egut', 'Migut.G00436' => 'egut', 'Migut.G00718' => 'egut', 'MSTRG.21891' => 'ama', 'MSTRG.26910' => 'ama', 'MSTRG.4099' => 'ama', 'MSTRG.9925' => 'ama', 'Nitab4.5_0000165g0010' => 'nta', 'Nitab4.5_0000209g0180' => 'nta', 'Nitab4.5_0000244g0440' => 'nta', 'Nitab4.5_0000525g0220' => 'nta', 'Nitab4.5_0001597g0020' => 'nta', 'Nitab4.5_0001878g0040' => 'nta', 'Nitab4.5_0001878g0060' => 'nta', 'Nitab4.5_0002838g0100' => 'nta', 'Nitab4.5_0002838g0120' => 'nta', 'Nitab4.5_0004798g0030' => 'nta', 'Nitab4.5_0005420g0010' => 'nta', 'Nitab4.5_0005507g0010' => 'nta', 'Nitab4.5_0005574g0020' => 'nta', 'Nitab4.5_0005838g0010' => 'nta', 'Nitab4.5_0010580g0020' => 'nta', 'Nn1g02599' => 'nnu', 'Nn1g02608' => 'nnu', 'Nn3g17742' => 'nnu', 'Nn3g19534' => 'nnu', 'Nn3g19535' => 'nnu', 'Oeu008790.1' => 'oeu', 'Oeu008792.1' => 'oeu', 'Oeu032590.1' => 'oeu', 'Oeu035349.1' => 'oeu', 'Oeu049791.1' => 'oeu', 'Os01g0774500' => 'osa', 'Os03g0628800' => 'osa', 'Os03g0798600' => 'osa', 'Os05g0508800' => 'osa', 'Peaxi162Scf00036g02018' => 'pax', 'Peaxi162Scf00578g00032' => 'pax', 'Peaxi162Scf00578g00317' => 'pax', 'Peaxi162Scf00785g00114' => 'pax', 'Peaxi162Scf00813g00119' => 'pax', 'Peaxi162Scf00906g00227' => 'pax', 'PGR004G0875' => 'pgr', 'PGR004G2424' => 'pgr', 'PGR031G1239' => 'pgr', 'PGR031G2474' => 'pgr', 'PGR044G0423' => 'pgr', 'PGSC0003DMG400001128' => 'stu', 'PGSC0003DMG400007336' => 'stu', 'PGSC0003DMG400016318' => 'stu', 'PGSC0003DMG400016319' => 'stu', 'PGSC0003DMG400018074' => 'stu', 'Phvul.001G157700' => 'pvu', 'Phvul.002G148550' => 'pvu', 'Phvul.002G320200' => 'pvu', 'Phvul.003G089200' => 'pvu', 'Phvul.007G126000' => 'pvu', 'Phvul.007G126100' => 'pvu', 'Phvul.007G178000' => 'pvu', 'Phvul.007G178200' => 'pvu', 'Potri.002G043000' => 'ptr', 'Potri.002G043200' => 'ptr', 'Potri.003G123750' => 'ptr', 'Potri.005G055401' => 'ptr', 'Potri.005G219700' => 'ptr', 'Potri.005G220000' => 'ptr', 'Potri.008G161901' => 'ptr', 'Potri.008G162000' => 'ptr', 'Potri.008G162400' => 'ptr', 'Potri.010G076900' => 'ptr', 'Pp3c12_9180' => 'ppa', 'Pp3c13_19770' => 'ppa', 'Pp3c14_22950' => 'ppa', 'Pp3c16_12160' => 'ppa', 'Pp3c27_7820' => 'ppa', 'Pp3c2_3490' => 'ppa', 'Pp3c3_23700' => 'ppa', 'Pp3c3_36520' => 'ppa', 'Pp3c4_15250' => 'ppa', 'PRCOL_00007002' => 'pco', 'Prupe.1G030600' => 'ppe', 'Prupe.1G030700' => 'ppe', 'Prupe.6G345200' => 'ppe', 'Prupe.8G230300' => 'ppe', 'Prupe.8G230500' => 'ppe', 'Psat3g059600' => 'psa', 'Psat5g200920' => 'psa', 'Psat6g056440' => 'psa', 'Psat6g057360' => 'psa', 'Psat6g134120' => 'psa', 'Psat6g134160' => 'psa', 'Psat7g008640' => 'psa', 'Psat7g185240' => 'psa', 'PSO017G1330' => 'pso', 'PSO063G6097' => 'pso', 'PSO170G0835' => 'pso', 'PSO170G2499' => 'pso', 'PSO210G5058' => 'pso', 'PSO210G6154' => 'pso', 'PSO585G0031' => 'pso', 'PSO832G0264' => 'pso', 'PSO832G4288' => 'pso', 'QL03p027355' => 'qlo', 'QL03p027430' => 'qlo', 'QL04p081380' => 'qlo', 'QL06p015642' => 'qlo', 'QL06p015650' => 'qlo', 'QL06p015686' => 'qlo', 'QL12p042927' => 'qlo', 'QL93p1863_0035' => 'qlo', 'RcHm_v2.0_Chr3g0450581' => 'rch', 'RcHm_v2.0_Chr4g0390371' => 'rch', 'RcHm_v2.0_Chr4g0390381' => 'rch', 'RcHm_v2.0_Chr4g0390491' => 'rch', 'RcHm_v2.0_Chr4g0390501' => 'rch', 'RcHm_v2.0_Chr6g0289231' => 'rch', 'Rhsim04G0190400' => 'rsi', 'Rhsim04G0190500' => 'rsi', 'Rhsim04G0190600' => 'rsi', 'Rhsim13G0031400' => 'rsi', 'Rhsim13G0165600' => 'rsi', 'RhsimUnG0114600' => 'rsi', 'RhsimUnG0114700' => 'rsi', 'Sabra02G0034800' => 'sbr', 'Sabra02G0035100' => 'sbr', 'Sabra05G0168600' => 'sbr', 'Sabra05G0168800' => 'sbr', 'Sabra08G0123700' => 'sbr', 'Sabra10G0031900' => 'sbr', 'Sabra13G0039000' => 'sbr', 'SalBow2G0782' => 'sbo', 'SalBow2G1403' => 'sbo', 'SalBow4G0074' => 'sbo', 'SalBow4G2635' => 'sbo', 'SalBow5G3010' => 'sbo', 'Sc05g0000870' => 'sci', 'Sc05g0000890' => 'sci', 'Sc13g0005000' => 'sci', 'Sc13g0005030' => 'sci', 'Sc19g0003790' => 'sci', 'Sc19g0003800' => 'sci', 'Sed0003467' => 'sed', 'Sed0009355' => 'sed', 'Sed0009894' => 'sed', 'Sed0011972' => 'sed', 'Sed0021483' => 'sed', 'Sed0021750' => 'sed', 'Sed0026279' => 'sed', 'SEGI_05312' => 'sgi', 'SEGI_10112' => 'sgi', 'SEGI_15835' => 'sgi', 'SEGI_30386' => 'sgi', 'SEGI_34122' => 'sgi', 'SEGI_35063' => 'sgi', 'SGA_v2.0_scaffold101G29794' => 'sas', 'SGA_v2.0_scaffold1G00573' => 'sas', 'SGA_v2.0_scaffold79G25637' => 'sas', 'SGA_v2.0_scaffold88G27283' => 'sas', 'SGA_v2.0_scaffold88G27285' => 'sas', 'SGA_v2.0_scaffold88G27331' => 'sas', 'SHI09937' => 'shi', 'SMO119G0302' => 'smo', 'SMO137G0231' => 'smo', 'SMO367G1151' => 'smo', 'Solyc02g082000.3' => 'sly', 'Solyc06g031670.3' => 'sly', 'Solyc06g053810.3' => 'sly', 'Solyc07g025457.1' => 'sly', 'Solyc08g059740.1' => 'sly', 'Solyc08g059750.3' => 'sly', 'Solyc09g083370.3' => 'sly', 'Solyc12g038950.3' => 'sly', 'Sopen02g026630' => 'spe', 'Sopen06g018930' => 'spe', 'Sopen06g018940' => 'spe', 'Sopen08g009460' => 'spe', 'Sopen09g032290' => 'spe', 'Sp1g03080' => 'spa', 'Sp1g03090' => 'spa', 'Sp1g05480' => 'spa', 'Sp2g07860' => 'spa', 'Sp2g08430' => 'spa', 'Sp2g08440' => 'spa', 'Sp2g26200' => 'spa', 'Sp4g13170' => 'spa', 'Sp6g33840' => 'spa', 'SpUn1204_0010' => 'spa', 'TAR365G0908' => 'tar', 'TAR381G1270' => 'tar', 'TAR381G1651' => 'tar', 'TAR625G1131' => 'tar', 'TAR633G0962' => 'tar', 'TAR633G1729' => 'tar', 'TAR633G1864' => 'tar', 'TAR636G0221' => 'tar', 'TAR636G0314' => 'tar', 'TAR636G3202' => 'tar', 'THA.LOC104800805' => 'tha', 'THA.LOC104801096' => 'tha', 'THA.LOC104801555' => 'tha', 'THA.LOC104808491' => 'tha', 'THA.LOC104808595' => 'tha', 'THA.LOC104815985' => 'tha', 'THA.LOC104822250' => 'tha', 'THA.LOC104826071' => 'tha', 'Thecc.01G265200' => 'tca', 'Thecc.01G265300' => 'tca', 'Thecc.01G265700' => 'tca', 'Thecc.03G109100' => 'tca', 'Thecc.04G245900' => 'tca', 'Thecc.04G246000' => 'tca', 'Thhalv10003334m.g' => 'esa', 'Thhalv10005508m.g' => 'esa', 'Thhalv10005643m.g' => 'esa', 'Thhalv10007316m.g' => 'esa', 'Thhalv10009006m.g' => 'esa', 'Thhalv10009309m.g' => 'esa', 'Thhalv10014917m.g' => 'esa', 'Thhalv10014919m.g' => 'esa', 'Thhalv10015393m.g' => 'esa', 'Thhalv10016515m.g' => 'esa', 'Thhalv10029242m.g' => 'esa', 'TPR.G16654' => 'tpr', 'TPR.G20589' => 'tpr', 'TPR.G23029' => 'tpr', 'TPR.G27731' => 'tpr', 'TPR.G28889' => 'tpr', 'TPR.G28899' => 'tpr', 'TPR.G30846' => 'tpr', 'TPR.G5452' => 'tpr', 'TPR.G5713' => 'tpr', 'TPR.G9046' => 'tpr', 'TPR.G9061' => 'tpr', 'TWI09G1075' => 'twi', 'TWI12G0806' => 'twi', 'TWI18G0108' => 'twi', 'TWI53G1361' => 'twi', 'TWI73G0185' => 'twi', 'TWI73G0427' => 'twi', 'unitig_37.g12001' => 'ugi', 'unitig_747.g21660' => 'ugi', 'unitig_748.g7232' => 'ugi', 'unitig_748.g7315' => 'ugi', 'unitig_85.g27262' => 'ugi', 'unitig_92.g28220' => 'ugi', 'vmacro02632' => 'vma', 'vmacro08410' => 'vma', 'vmacro08411' => 'vma', 'vmacro15407' => 'vma', 'VMungo0251G3619' => 'vmu', 'VMungo0720G1204' => 'vmu', 'VMungo0720G1918' => 'vmu', 'VMungo0720G2387' => 'vmu', 'VMungo0720G2961' => 'vmu', 'VMungo1215G2154' => 'vmu', 'VMungo1383G2411' => 'vmu', 'Zm00001eb051130' => 'zma', 'Zm00001eb116830' => 'zma', 'Zm00001eb116850' => 'zma', 'Zm00001eb151740' => 'zma', 'Zm00001eb292360' => 'zma', 'Zm00001eb301640' => 'zma' ), 'gf_id' => 'HOM05D000856', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000856' ), 'data_identifier' => 'HOM05D000856', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000856', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p00010' => 'bna', 'A03p04160' => 'bna', 'A03p17160' => 'bna', 'A04p23370' => 'bna', 'A05p14860' => 'bna', 'A08p37020' => 'bna', 'A09p08050' => 'bna', 'A09p66800' => 'bna', 'A09p67940' => 'bna', 'A10p02680' => 'bna', 'A10p05320' => 'bna', 'Aa31LG1G20560' => 'aar', 'Aa31LG1G20610' => 'aar', 'Aa31LG1G7810' => 'aar', 'Aa31LG5G3590' => 'aar', 'Aa31LG5G6140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3819' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4683' => 'aag', 'Actinidia04480' => 'ach', 'Actinidia05466' => 'ach', 'Actinidia08445' => 'ach', 'Actinidia21170' => 'ach', 'Actinidia24812' => 'ach', 'Actinidia24951' => 'ach', 'Actinidia40088' => 'ach', 'Ah.02g111660' => 'amhyb', 'Ah.11g048900' => 'amhyb', 'Ah.11g049910' => 'amhyb', 'AL1G13870' => 'aly', 'AL1G13880' => 'aly', 'AL1G16760' => 'aly', 'AL390U10020' => 'aly', 'AL4G25520' => 'aly', 'AL6G19890' => 'aly', 'AL6G19900' => 'aly', 'AL6G19910' => 'aly', 'AL8G40100' => 'aly', 'Aqoxy2G03562' => 'aox', 'Aqoxy5G00316' => 'aox', 'Aqoxy5G00926' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1628KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1H403S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2FU6SJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.882I6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8YRY2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YN1SN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AF70II' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZA8L1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F916KL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHRD8H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KTZ8QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S22EMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8M29T' => 'arhy', 'AT1G04270' => 'ath', 'AT1G04280' => 'ath', 'AT1G06750' => 'ath', 'AT1G33850' => 'ath', 'AT2G30630' => 'ath', 'AT5G09490' => 'ath', 'AT5G09500' => 'ath', 'AT5G09510' => 'ath', 'AT5G43640' => 'ath', 'AT5G63070' => 'ath', 'ATR0605G315' => 'atr', 'Atru.chr11.175' => 'acertr', 'Atru.chr11.653' => 'acertr', 'Atru.chr3.1616' => 'acertr', 'Atru.chr4.2230' => 'acertr', 'Atru.chr4.2232' => 'acertr', 'Atru.chr5.1598' => 'acertr', 'Atru.chr5.1600' => 'acertr', 'Atru.chr5.2188' => 'acertr', 'AUR62008326' => 'cqu', 'AUR62011922' => 'cqu', 'AUR62011924' => 'cqu', 'AUR62021771' => 'cqu', 'AUR62032237' => 'cqu', 'AUR62032240' => 'cqu', 'BcaB01g05572' => 'bca', 'BcaB02g10337' => 'bca', 'BcaB04g19944' => 'bca', 'BcaB05g21548' => 'bca', 'BcaB05g21549' => 'bca', 'BcaB05g23227' => 'bca', 'BcaB06g26256' => 'bca', 'BcaB06g26257' => 'bca', 'BcaB06g28379' => 'bca', 'BcaC02g11159' => 'bca', 'BcaC03g13258' => 'bca', 'BcaC03g13259' => 'bca', 'BcaC05g24456' => 'bca', 'BcaC05g24457' => 'bca', 'BcaC07g36922' => 'bca', 'BcaC07g36923' => 'bca', 'BcaC07g42050' => 'bca', 'BcaC07g42176' => 'bca', 'BcaC07g42195' => 'bca', 'BcaC07g42196' => 'bca', 'BcaNung06674' => 'bca', 'BolC2t06351H' => 'bol', 'BolC2t06352H' => 'bol', 'BolC3t12993H' => 'bol', 'BolC4t23525H' => 'bol', 'BolC4t27475H' => 'bol', 'BolC5t29025H' => 'bol', 'BolC5t29026H' => 'bol', 'BolC8t46898H' => 'bol', 'BolC8t46899H' => 'bol', 'BolC8t52630H' => 'bol', 'BolC8t52765H' => 'bol', 'BolC9t53824H' => 'bol', 'BraA03t09760Z' => 'bra', 'BraA03t10990Z' => 'bra', 'BraA05t20413Z' => 'bra', 'BraA08t35602Z' => 'bra', 'BraA09t36458Z' => 'bra', 'BraA09t42018Z' => 'bra', 'BraA09t42129Z' => 'bra', 'BraA10t42536Z' => 'bra', 'BraA10t42537Z' => 'bra', 'C01p10690' => 'bna', 'C02p03890' => 'bna', 'C02p03900' => 'bna', 'C03p04620' => 'bna', 'C04p19870' => 'bna', 'C04p59670' => 'bna', 'C05p02460' => 'bna', 'C05p02470' => 'bna', 'C08p00980' => 'bna', 'C08p00990' => 'bna', 'C08p51030' => 'bna', 'C08p52360' => 'bna', 'C09p09120' => 'bna', 'CAN.G19.15' => 'can', 'CAN.G251.10' => 'can', 'CAN.G251.9' => 'can', 'CAN.G398.24' => 'can', 'CAN.G410.32' => 'can', 'CAN.G881.2' => 'can', 'CANSAT01G3025' => 'cansat', 'CANSAT78G1211' => 'cansat', 'CANSAT78G1218' => 'cansat', 'CANSAT78G1521' => 'cansat', 'CANSAT78G1670' => 'cansat', 'CARHR003600' => 'chi', 'CARHR003610' => 'chi', 'CARHR006290' => 'chi', 'CARHR006430' => 'chi', 'CARHR124110' => 'chi', 'CARHR203870' => 'chi', 'CARHR203880' => 'chi', 'CARHR203890' => 'chi', 'CARHR276880' => 'chi', 'Carub.0001s0346' => 'cru', 'Carub.0001s0347' => 'cru', 'Carub.0001s0607' => 'cru', 'Carub.0003s2768' => 'cru', 'Carub.0003s2769' => 'cru', 'Carub.0004s1178' => 'cru', 'Carub.0006s0806' => 'cru', 'Carub.0006s0807' => 'cru', 'Carub.0006s0808' => 'cru', 'Carub.0008s0501' => 'cru', 'Carub.0008s2379' => 'cru', 'Ca_08655_v3' => 'car', 'Ca_08922_v3' => 'car', 'Ca_08923_v3' => 'car', 'Ca_09119_v3' => 'car', 'Ca_09703_v3' => 'car', 'Ca_09705_v3' => 'car', 'Ca_09835_v3' => 'car', 'Ca_26403_v3' => 'car', 'Ca_30719_v3' => 'car', 'CBR_g17958' => 'cbr', 'CBR_g40516' => 'cbr', 'Cc00_g05350' => 'ccan', 'Cc01_g18690' => 'ccan', 'Cc03_g04830' => 'ccan', 'Cc03_g04850' => 'ccan', 'CDE02G4469' => 'cde', 'CDE06G0883' => 'cde', 'CDE06G1295' => 'cde', 'CDE06G1390' => 'cde', 'CDE07G0584' => 'cde', 'CDE07G1084' => 'cde', 'CDE08G1259' => 'cde', 'Cfa002341' => 'cfa', 'Cfa024337' => 'cfa', 'Ciclev10004749m.g' => 'ccl', 'Ciclev10006127m.g' => 'ccl', 'Ciclev10019720m.g' => 'ccl', 'Ciclev10022652m.g' => 'ccl', 'CiPaw.01G190400' => 'cil', 'CiPaw.01G190500' => 'cil', 'CiPaw.02G116400' => 'cil', 'CiPaw.02G116500' => 'cil', 'CiPaw.04G183000' => 'cil', 'CiPaw.04G183300' => 'cil', 'ClCG05G004610' => 'cla', 'ClCG05G004620' => 'cla', 'ClCG06G006730' => 'cla', 'ClCG06G006740' => 'cla', 'ClCG11G003690' => 'cla', 'COL.COLO4_08276' => 'col', 'COL.COLO4_08277' => 'col', 'COL.COLO4_15787' => 'col', 'COL.COLO4_15789' => 'col', 'Cpa.g.c44815' => 'cpa', 'Cpa.g.sc52.144' => 'cpa', 'Cpa.g.sc58.46' => 'cpa', 'Cpa.g.sc58.47' => 'cpa', 'Cre08.g360900' => 'cre', 'CsaV3_2G013030' => 'csa', 'CsaV3_2G013050' => 'csa', 'CsaV3_2G015620' => 'csa', 'CsaV3_3G012590' => 'csa', 'CsaV3_3G012600' => 'csa', 'CSS0001641' => 'camsi', 'CSS0008310' => 'camsi', 'CSS0013011' => 'camsi', 'CSS0017147' => 'camsi', 'CSS0022970' => 'camsi', 'CSS0025655' => 'camsi', 'CSS0028665' => 'camsi', 'CSS0029117' => 'camsi', 'CSS0032024' => 'camsi', 'CSS0039681' => 'camsi', 'CSS0046516' => 'camsi', 'CSS0050307' => 'camsi', 'DCAR_005871' => 'dca', 'DCAR_007342' => 'dca', 'DCAR_024228' => 'dca', 'DCAR_027277' => 'dca', 'DCAR_030718' => 'dca', 'Dinv20287' => 'din', 'Dinv22461' => 'din', 'Dinv22464' => 'din', 'Dinv29912' => 'din', 'Dinv29913' => 'din', 'Dinv34580' => 'din', 'Dinv34582' => 'din', 'Dinv44632' => 'din', 'Duzib052G0266' => 'dzi', 'Duzib133G0907' => 'dzi', 'Duzib133G1034' => 'dzi', 'Duzib138G0207' => 'dzi', 'Duzib138G0491' => 'dzi', 'Duzib151G0812' => 'dzi', 'Duzib151G1166' => 'dzi', 'Duzib168G0192' => 'dzi', 'Duzib211G0077' => 'dzi', 'Duzib212G0429' => 'dzi', 'Duzib212G0472' => 'dzi', 'ECA233G2617' => 'eca', 'ECA236G4188' => 'eca', 'ECA240G0936' => 'eca', 'ECA240G1129' => 'eca', 'ECA247G0623' => 'eca', 'EL10Ac5g10451' => 'bvu', 'EL10Ac5g10453' => 'bvu', 'EL10Ac5g10894' => 'bvu', 'Eucgr.H00192' => 'egr', 'Eucgr.H00193' => 'egr', 'Eucgr.H00194' => 'egr', 'Eucgr.J01562' => 'egr', 'Eucgr.K03301' => 'egr', 'FAN02G0632' => 'fan', 'FAN05G5378' => 'fan', 'FAN09G3247' => 'fan', 'FAN12G0435' => 'fan', 'FAN12G2426' => 'fan', 'FAN14G1707' => 'fan', 'FAN14G4725' => 'fan', 'FAN15G2071' => 'fan', 'FAN17G3065' => 'fan', 'FAN19G1376' => 'fan', 'FAN20G0354' => 'fan', 'FAN20G2429' => 'fan', 'FAN20G2658' => 'fan', 'FAN24G2343' => 'fan', 'FAN27G2362' => 'fan', 'FAN28G1765' => 'fan', 'FvH4_1g16020' => 'fve', 'FvH4_2g04890' => 'fve', 'FvH4_2g22270' => 'fve', 'FvH4_4g02630' => 'fve', 'FvH4_4g02640' => 'fve', 'FvH4_6g02650' => 'fve', 'Glyma.02G140600' => 'gma', 'Glyma.03G159900' => 'gma', 'Glyma.05G234800' => 'gma', 'Glyma.07G269600' => 'gma', 'Glyma.08G042300' => 'gma', 'Glyma.10G033500' => 'gma', 'Glyma.10G185200' => 'gma', 'Glyma.17G004300' => 'gma', 'Glyma.19G161900' => 'gma', 'Glyma.20G205100' => 'gma', 'Glyma.20G205200' => 'gma', 'Gohir.A01G139101' => 'ghi', 'Gohir.A02G035600' => 'ghi', 'Gohir.A02G117901' => 'ghi', 'Gohir.A07G210100' => 'ghi', 'Gohir.A07G210200' => 'ghi', 'Gohir.A08G061100' => 'ghi', 'Gohir.A09G223000' => 'ghi', 'Gohir.A09G223100' => 'ghi', 'Gohir.A10G113900' => 'ghi', 'Gohir.A10G114000' => 'ghi', 'Gohir.D02G042300' => 'ghi', 'Gohir.D07G216100' => 'ghi', 'Gohir.D07G216200' => 'ghi', 'Gohir.D08G070400' => 'ghi', 'Gohir.D09G225000' => 'ghi', 'Gohir.D09G225100' => 'ghi', 'Gohir.D10G152300' => 'ghi', 'Gohir.D10G153200' => 'ghi', 'Gohir.D11G133701' => 'ghi', 'Gorai.004G074100' => 'gra', 'Gorai.005G046800' => 'gra', 'Gorai.006G246500' => 'gra', 'Gorai.006G246600' => 'gra', 'Gorai.007G142900' => 'gra', 'Gorai.011G171000' => 'gra', 'Gorai.011G171100' => 'gra', 'Gorai.013G104300' => 'gra', 'Gorai.013G104400' => 'gra', 'GSVIVG01000754001' => 'vvi', 'GSVIVG01000756001' => 'vvi', 'GSVIVG01010903001' => 'vvi', 'GSVIVG01017623001' => 'vvi', 'GSVIVG01018113001' => 'vvi', 'GSVIVG01018116001' => 'vvi', 'GSVIVG01018118001' => 'vvi', 'HanXRQChr03g0076211' => 'han', 'HanXRQChr03g0092431' => 'han', 'HanXRQChr03g0092441' => 'han', 'HanXRQChr03g0092591' => 'han', 'HanXRQChr03g0092671' => 'han', 'HanXRQChr03g0092681' => 'han', 'HanXRQChr03g0092691' => 'han', 'HanXRQChr03g0092701' => 'han', 'HanXRQChr03g0092721' => 'han', 'HanXRQChr03g0092731' => 'han', 'HanXRQChr04g0113681' => 'han', 'HanXRQChr10g0281371' => 'han', 'HanXRQChr11g0337141' => 'han', 'HanXRQChr13g0424521' => 'han', 'HanXRQChr13g0424531' => 'han', 'HanXRQChr13g0424541' => 'han', 'HanXRQChr16g0498221' => 'han', 'Haze_04377' => 'cav', 'Haze_11298' => 'cav', 'Haze_24547' => 'cav', 'Haze_24550' => 'cav', 'Haze_26587' => 'cav', 'Hma1.2p1_0650F.1_g195410' => 'hma', 'Hma1.2p1_0893F.1_g233470' => 'hma', 'HPP92_006508' => 'vpl', 'HPP92_024780' => 'vpl', 'Hund02688' => 'sun', 'Hund09380' => 'sun', 'Hund09381' => 'sun', 'Hund09832' => 'sun', 'Hund09833' => 'sun', 'Hund11351' => 'sun', 'Hund11513' => 'sun', 'Lalb_Chr06g0162591' => 'lal', 'Lalb_Chr06g0162601' => 'lal', 'Lalb_Chr06g0169321' => 'lal', 'Lalb_Chr09g0330951' => 'lal', 'Lalb_Chr16g0387631' => 'lal', 'Lalb_Chr21g0306241' => 'lal', 'Lalb_Chr25g0290051' => 'lal', 'Lalb_Chr25g0290061' => 'lal', 'Lalb_Chr25g0290071' => 'lal', 'Lj1g0003876' => 'lja', 'Lj1P1207T36' => 'lonja', 'Lj2C1156G12' => 'lonja', 'Lj3A793G39' => 'lonja', 'Lj3C580G2' => 'lonja', 'Lj3C780G2' => 'lonja', 'Lj3C780T4' => 'lonja', 'Lj3C793G9' => 'lonja', 'Lj4g0012960' => 'lja', 'Lj5g0021252' => 'lja', 'Lj5g0021484' => 'lja', 'Lj5g0024528' => 'lja', 'Lj6A399T12' => 'lonja', 'Lj6A656G65' => 'lonja', 'Lsat_1_v5_gn_3_125500' => 'lsa', 'Lsat_1_v5_gn_3_125540' => 'lsa', 'Lsat_1_v5_gn_5_72701' => 'lsa', 'Lsat_1_v5_gn_8_91560' => 'lsa', 'Lsat_1_v5_gn_9_9640' => 'lsa', 'Manes.01G200600' => 'mes', 'Manes.01G200700' => 'mes', 'Manes.03G168900' => 'mes', 'Manes.03G169000' => 'mes', 'Manes.05G085801' => 'mes', 'Manes.05G086200' => 'mes', 'Manes.15G036700' => 'mes', 'Manes.15G036900' => 'mes', 'Mapoly0004s0172' => 'mpo', 'Mapoly0023s0001' => 'mpo', 'Mapoly0142s0012' => 'mpo', 'MBI01_g32854_MAGBIO' => 'mbi', 'MBI11_g24427_MAGBIO' => 'mbi', 'MBI11_g47319_MAGBIO' => 'mbi', 'MCO01G433' => 'mco', 'MD00G1187800' => 'mdo', 'MD04G1226500' => 'mdo', 'MD05G1203900' => 'mdo', 'MD10G1191100' => 'mdo', 'MD12G1243500' => 'mdo', 'MD13G1207000' => 'mdo', 'MD13G1207100' => 'mdo', 'MD16G1208600' => 'mdo', 'Medtr1g050352' => 'mtr', 'Medtr1g070385' => 'mtr', 'Medtr1g070450' => 'mtr', 'Medtr1g075200' => 'mtr', 'Medtr1g075250' => 'mtr', 'Medtr1g075260' => 'mtr', 'Medtr1g475250' => 'mtr', 'Medtr4g075450' => 'mtr', 'Medtr7g096300' => 'mtr', 'Medtr8g105110' => 'mtr', 'MELO3C006470.2' => 'cme', 'MELO3C006471.2' => 'cme', 'MELO3C020772.2' => 'cme', 'MELO3C026780.2' => 'cme', 'MELO3C026781.2' => 'cme', 'Migut.D00390' => 'egut', 'Migut.G00435' => 'egut', 'Migut.G00436' => 'egut', 'Migut.G00718' => 'egut', 'MSTRG.21891' => 'ama', 'MSTRG.26910' => 'ama', 'MSTRG.4099' => 'ama', 'MSTRG.9925' => 'ama', 'Nitab4.5_0000165g0010' => 'nta', 'Nitab4.5_0000209g0180' => 'nta', 'Nitab4.5_0000244g0440' => 'nta', 'Nitab4.5_0000525g0220' => 'nta', 'Nitab4.5_0001597g0020' => 'nta', 'Nitab4.5_0001878g0040' => 'nta', 'Nitab4.5_0001878g0060' => 'nta', 'Nitab4.5_0002838g0100' => 'nta', 'Nitab4.5_0002838g0120' => 'nta', 'Nitab4.5_0004798g0030' => 'nta', 'Nitab4.5_0005420g0010' => 'nta', 'Nitab4.5_0005507g0010' => 'nta', 'Nitab4.5_0005574g0020' => 'nta', 'Nitab4.5_0005838g0010' => 'nta', 'Nitab4.5_0010580g0020' => 'nta', 'Nn1g02599' => 'nnu', 'Nn1g02608' => 'nnu', 'Nn3g17742' => 'nnu', 'Nn3g19534' => 'nnu', 'Nn3g19535' => 'nnu', 'Oeu008790.1' => 'oeu', 'Oeu008792.1' => 'oeu', 'Oeu032590.1' => 'oeu', 'Oeu035349.1' => 'oeu', 'Oeu049791.1' => 'oeu', 'Os01g0774500' => 'osa', 'Os03g0628800' => 'osa', 'Os03g0798600' => 'osa', 'Os05g0508800' => 'osa', 'Peaxi162Scf00036g02018' => 'pax', 'Peaxi162Scf00578g00032' => 'pax', 'Peaxi162Scf00578g00317' => 'pax', 'Peaxi162Scf00785g00114' => 'pax', 'Peaxi162Scf00813g00119' => 'pax', 'Peaxi162Scf00906g00227' => 'pax', 'PGR004G0875' => 'pgr', 'PGR004G2424' => 'pgr', 'PGR031G1239' => 'pgr', 'PGR031G2474' => 'pgr', 'PGR044G0423' => 'pgr', 'PGSC0003DMG400001128' => 'stu', 'PGSC0003DMG400007336' => 'stu', 'PGSC0003DMG400016318' => 'stu', 'PGSC0003DMG400016319' => 'stu', 'PGSC0003DMG400018074' => 'stu', 'Phvul.001G157700' => 'pvu', 'Phvul.002G148550' => 'pvu', 'Phvul.002G320200' => 'pvu', 'Phvul.003G089200' => 'pvu', 'Phvul.007G126000' => 'pvu', 'Phvul.007G126100' => 'pvu', 'Phvul.007G178000' => 'pvu', 'Phvul.007G178200' => 'pvu', 'Potri.002G043000' => 'ptr', 'Potri.002G043200' => 'ptr', 'Potri.003G123750' => 'ptr', 'Potri.005G055401' => 'ptr', 'Potri.005G219700' => 'ptr', 'Potri.005G220000' => 'ptr', 'Potri.008G161901' => 'ptr', 'Potri.008G162000' => 'ptr', 'Potri.008G162400' => 'ptr', 'Potri.010G076900' => 'ptr', 'Pp3c12_9180' => 'ppa', 'Pp3c13_19770' => 'ppa', 'Pp3c14_22950' => 'ppa', 'Pp3c16_12160' => 'ppa', 'Pp3c27_7820' => 'ppa', 'Pp3c2_3490' => 'ppa', 'Pp3c3_23700' => 'ppa', 'Pp3c3_36520' => 'ppa', 'Pp3c4_15250' => 'ppa', 'PRCOL_00007002' => 'pco', 'Prupe.1G030600' => 'ppe', 'Prupe.1G030700' => 'ppe', 'Prupe.6G345200' => 'ppe', 'Prupe.8G230300' => 'ppe', 'Prupe.8G230500' => 'ppe', 'Psat3g059600' => 'psa', 'Psat5g200920' => 'psa', 'Psat6g056440' => 'psa', 'Psat6g057360' => 'psa', 'Psat6g134120' => 'psa', 'Psat6g134160' => 'psa', 'Psat7g008640' => 'psa', 'Psat7g185240' => 'psa', 'PSO017G1330' => 'pso', 'PSO063G6097' => 'pso', 'PSO170G0835' => 'pso', 'PSO170G2499' => 'pso', 'PSO210G5058' => 'pso', 'PSO210G6154' => 'pso', 'PSO585G0031' => 'pso', 'PSO832G0264' => 'pso', 'PSO832G4288' => 'pso', 'QL03p027355' => 'qlo', 'QL03p027430' => 'qlo', 'QL04p081380' => 'qlo', 'QL06p015642' => 'qlo', 'QL06p015650' => 'qlo', 'QL06p015686' => 'qlo', 'QL12p042927' => 'qlo', 'QL93p1863_0035' => 'qlo', 'RcHm_v2.0_Chr3g0450581' => 'rch', 'RcHm_v2.0_Chr4g0390371' => 'rch', 'RcHm_v2.0_Chr4g0390381' => 'rch', 'RcHm_v2.0_Chr4g0390491' => 'rch', 'RcHm_v2.0_Chr4g0390501' => 'rch', 'RcHm_v2.0_Chr6g0289231' => 'rch', 'Rhsim04G0190400' => 'rsi', 'Rhsim04G0190500' => 'rsi', 'Rhsim04G0190600' => 'rsi', 'Rhsim13G0031400' => 'rsi', 'Rhsim13G0165600' => 'rsi', 'RhsimUnG0114600' => 'rsi', 'RhsimUnG0114700' => 'rsi', 'Sabra02G0034800' => 'sbr', 'Sabra02G0035100' => 'sbr', 'Sabra05G0168600' => 'sbr', 'Sabra05G0168800' => 'sbr', 'Sabra08G0123700' => 'sbr', 'Sabra10G0031900' => 'sbr', 'Sabra13G0039000' => 'sbr', 'SalBow2G0782' => 'sbo', 'SalBow2G1403' => 'sbo', 'SalBow4G0074' => 'sbo', 'SalBow4G2635' => 'sbo', 'SalBow5G3010' => 'sbo', 'Sc05g0000870' => 'sci', 'Sc05g0000890' => 'sci', 'Sc13g0005000' => 'sci', 'Sc13g0005030' => 'sci', 'Sc19g0003790' => 'sci', 'Sc19g0003800' => 'sci', 'Sed0003467' => 'sed', 'Sed0009355' => 'sed', 'Sed0009894' => 'sed', 'Sed0011972' => 'sed', 'Sed0021483' => 'sed', 'Sed0021750' => 'sed', 'Sed0026279' => 'sed', 'SEGI_05312' => 'sgi', 'SEGI_10112' => 'sgi', 'SEGI_15835' => 'sgi', 'SEGI_30386' => 'sgi', 'SEGI_34122' => 'sgi', 'SEGI_35063' => 'sgi', 'SGA_v2.0_scaffold101G29794' => 'sas', 'SGA_v2.0_scaffold1G00573' => 'sas', 'SGA_v2.0_scaffold79G25637' => 'sas', 'SGA_v2.0_scaffold88G27283' => 'sas', 'SGA_v2.0_scaffold88G27285' => 'sas', 'SGA_v2.0_scaffold88G27331' => 'sas', 'SHI09937' => 'shi', 'SMO119G0302' => 'smo', 'SMO137G0231' => 'smo', 'SMO367G1151' => 'smo', 'Solyc02g082000.3' => 'sly', 'Solyc06g031670.3' => 'sly', 'Solyc06g053810.3' => 'sly', 'Solyc07g025457.1' => 'sly', 'Solyc08g059740.1' => 'sly', 'Solyc08g059750.3' => 'sly', 'Solyc09g083370.3' => 'sly', 'Solyc12g038950.3' => 'sly', 'Sopen02g026630' => 'spe', 'Sopen06g018930' => 'spe', 'Sopen06g018940' => 'spe', 'Sopen08g009460' => 'spe', 'Sopen09g032290' => 'spe', 'Sp1g03080' => 'spa', 'Sp1g03090' => 'spa', 'Sp1g05480' => 'spa', 'Sp2g07860' => 'spa', 'Sp2g08430' => 'spa', 'Sp2g08440' => 'spa', 'Sp2g26200' => 'spa', 'Sp4g13170' => 'spa', 'Sp6g33840' => 'spa', 'SpUn1204_0010' => 'spa', 'TAR365G0908' => 'tar', 'TAR381G1270' => 'tar', 'TAR381G1651' => 'tar', 'TAR625G1131' => 'tar', 'TAR633G0962' => 'tar', 'TAR633G1729' => 'tar', 'TAR633G1864' => 'tar', 'TAR636G0221' => 'tar', 'TAR636G0314' => 'tar', 'TAR636G3202' => 'tar', 'THA.LOC104800805' => 'tha', 'THA.LOC104801096' => 'tha', 'THA.LOC104801555' => 'tha', 'THA.LOC104808491' => 'tha', 'THA.LOC104808595' => 'tha', 'THA.LOC104815985' => 'tha', 'THA.LOC104822250' => 'tha', 'THA.LOC104826071' => 'tha', 'Thecc.01G265200' => 'tca', 'Thecc.01G265300' => 'tca', 'Thecc.01G265700' => 'tca', 'Thecc.03G109100' => 'tca', 'Thecc.04G245900' => 'tca', 'Thecc.04G246000' => 'tca', 'Thhalv10003334m.g' => 'esa', 'Thhalv10005508m.g' => 'esa', 'Thhalv10005643m.g' => 'esa', 'Thhalv10007316m.g' => 'esa', 'Thhalv10009006m.g' => 'esa', 'Thhalv10009309m.g' => 'esa', 'Thhalv10014917m.g' => 'esa', 'Thhalv10014919m.g' => 'esa', 'Thhalv10015393m.g' => 'esa', 'Thhalv10016515m.g' => 'esa', 'Thhalv10029242m.g' => 'esa', 'TPR.G16654' => 'tpr', 'TPR.G20589' => 'tpr', 'TPR.G23029' => 'tpr', 'TPR.G27731' => 'tpr', 'TPR.G28889' => 'tpr', 'TPR.G28899' => 'tpr', 'TPR.G30846' => 'tpr', 'TPR.G5452' => 'tpr', 'TPR.G5713' => 'tpr', 'TPR.G9046' => 'tpr', 'TPR.G9061' => 'tpr', 'TWI09G1075' => 'twi', 'TWI12G0806' => 'twi', 'TWI18G0108' => 'twi', 'TWI53G1361' => 'twi', 'TWI73G0185' => 'twi', 'TWI73G0427' => 'twi', 'unitig_37.g12001' => 'ugi', 'unitig_747.g21660' => 'ugi', 'unitig_748.g7232' => 'ugi', 'unitig_748.g7315' => 'ugi', 'unitig_85.g27262' => 'ugi', 'unitig_92.g28220' => 'ugi', 'vmacro02632' => 'vma', 'vmacro08410' => 'vma', 'vmacro08411' => 'vma', 'vmacro15407' => 'vma', 'VMungo0251G3619' => 'vmu', 'VMungo0720G1204' => 'vmu', 'VMungo0720G1918' => 'vmu', 'VMungo0720G2387' => 'vmu', 'VMungo0720G2961' => 'vmu', 'VMungo1215G2154' => 'vmu', 'VMungo1383G2411' => 'vmu', 'Zm00001eb051130' => 'zma', 'Zm00001eb116830' => 'zma', 'Zm00001eb116850' => 'zma', 'Zm00001eb151740' => 'zma', 'Zm00001eb292360' => 'zma', 'Zm00001eb301640' => 'zma' ) $gf_id = 'HOM05D000856' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000856' ) $data_identifier = 'HOM05D000856' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 13, 'ath' => (int) 10, 'atr' => (int) 1, 'acertr' => (int) 8, 'cqu' => (int) 6, 'bca' => (int) 21, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 11, 'car' => (int) 9, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 8, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 5, 'fan' => (int) 16, 'fve' => (int) 6, 'gma' => (int) 11, 'ghi' => (int) 19, 'gra' => (int) 9, 'vvi' => (int) 7, 'han' => (int) 17, 'cav' => (int) 5, 'hma' => (int) 2, 'vpl' => (int) 2, 'sun' => (int) 7, 'lal' => (int) 9, 'lja' => (int) 5, 'lonja' => (int) 9, 'lsa' => (int) 5, 'mes' => (int) 8, 'mpo' => (int) 3, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 10, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 15, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 9, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 9, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 6, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 5, 'spa' => (int) 10, 'tar' => (int) 10, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 11, 'tpr' => (int) 11, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 4, 'vmu' => (int) 7, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb301640' $species_info = array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ) $local_species = 'ccl' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000856', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p00010' => 'bna', 'A03p04160' => 'bna', 'A03p17160' => 'bna', 'A04p23370' => 'bna', 'A05p14860' => 'bna', 'A08p37020' => 'bna', 'A09p08050' => 'bna', 'A09p66800' => 'bna', 'A09p67940' => 'bna', 'A10p02680' => 'bna', 'A10p05320' => 'bna', 'Aa31LG1G20560' => 'aar', 'Aa31LG1G20610' => 'aar', 'Aa31LG1G7810' => 'aar', 'Aa31LG5G3590' => 'aar', 'Aa31LG5G6140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3819' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4683' => 'aag', 'Actinidia04480' => 'ach', 'Actinidia05466' => 'ach', 'Actinidia08445' => 'ach', 'Actinidia21170' => 'ach', 'Actinidia24812' => 'ach', 'Actinidia24951' => 'ach', 'Actinidia40088' => 'ach', 'Ah.02g111660' => 'amhyb', 'Ah.11g048900' => 'amhyb', 'Ah.11g049910' => 'amhyb', 'AL1G13870' => 'aly', 'AL1G13880' => 'aly', 'AL1G16760' => 'aly', 'AL390U10020' => 'aly', 'AL4G25520' => 'aly', 'AL6G19890' => 'aly', 'AL6G19900' => 'aly', 'AL6G19910' => 'aly', 'AL8G40100' => 'aly', 'Aqoxy2G03562' => 'aox', 'Aqoxy5G00316' => 'aox', 'Aqoxy5G00926' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1628KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1H403S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2FU6SJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.882I6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8YRY2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YN1SN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AF70II' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZA8L1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F916KL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHRD8H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KTZ8QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S22EMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8M29T' => 'arhy', 'AT1G04270' => 'ath', 'AT1G04280' => 'ath', 'AT1G06750' => 'ath', 'AT1G33850' => 'ath', 'AT2G30630' => 'ath', 'AT5G09490' => 'ath', 'AT5G09500' => 'ath', 'AT5G09510' => 'ath', 'AT5G43640' => 'ath', 'AT5G63070' => 'ath', 'ATR0605G315' => 'atr', 'Atru.chr11.175' => 'acertr', 'Atru.chr11.653' => 'acertr', 'Atru.chr3.1616' => 'acertr', 'Atru.chr4.2230' => 'acertr', 'Atru.chr4.2232' => 'acertr', 'Atru.chr5.1598' => 'acertr', 'Atru.chr5.1600' => 'acertr', 'Atru.chr5.2188' => 'acertr', 'AUR62008326' => 'cqu', 'AUR62011922' => 'cqu', 'AUR62011924' => 'cqu', 'AUR62021771' => 'cqu', 'AUR62032237' => 'cqu', 'AUR62032240' => 'cqu', 'BcaB01g05572' => 'bca', 'BcaB02g10337' => 'bca', 'BcaB04g19944' => 'bca', 'BcaB05g21548' => 'bca', 'BcaB05g21549' => 'bca', 'BcaB05g23227' => 'bca', 'BcaB06g26256' => 'bca', 'BcaB06g26257' => 'bca', 'BcaB06g28379' => 'bca', 'BcaC02g11159' => 'bca', 'BcaC03g13258' => 'bca', 'BcaC03g13259' => 'bca', 'BcaC05g24456' => 'bca', 'BcaC05g24457' => 'bca', 'BcaC07g36922' => 'bca', 'BcaC07g36923' => 'bca', 'BcaC07g42050' => 'bca', 'BcaC07g42176' => 'bca', 'BcaC07g42195' => 'bca', 'BcaC07g42196' => 'bca', 'BcaNung06674' => 'bca', 'BolC2t06351H' => 'bol', 'BolC2t06352H' => 'bol', 'BolC3t12993H' => 'bol', 'BolC4t23525H' => 'bol', 'BolC4t27475H' => 'bol', 'BolC5t29025H' => 'bol', 'BolC5t29026H' => 'bol', 'BolC8t46898H' => 'bol', 'BolC8t46899H' => 'bol', 'BolC8t52630H' => 'bol', 'BolC8t52765H' => 'bol', 'BolC9t53824H' => 'bol', 'BraA03t09760Z' => 'bra', 'BraA03t10990Z' => 'bra', 'BraA05t20413Z' => 'bra', 'BraA08t35602Z' => 'bra', 'BraA09t36458Z' => 'bra', 'BraA09t42018Z' => 'bra', 'BraA09t42129Z' => 'bra', 'BraA10t42536Z' => 'bra', 'BraA10t42537Z' => 'bra', 'C01p10690' => 'bna', 'C02p03890' => 'bna', 'C02p03900' => 'bna', 'C03p04620' => 'bna', 'C04p19870' => 'bna', 'C04p59670' => 'bna', 'C05p02460' => 'bna', 'C05p02470' => 'bna', 'C08p00980' => 'bna', 'C08p00990' => 'bna', 'C08p51030' => 'bna', 'C08p52360' => 'bna', 'C09p09120' => 'bna', 'CAN.G19.15' => 'can', 'CAN.G251.10' => 'can', 'CAN.G251.9' => 'can', 'CAN.G398.24' => 'can', 'CAN.G410.32' => 'can', 'CAN.G881.2' => 'can', 'CANSAT01G3025' => 'cansat', 'CANSAT78G1211' => 'cansat', 'CANSAT78G1218' => 'cansat', 'CANSAT78G1521' => 'cansat', 'CANSAT78G1670' => 'cansat', 'CARHR003600' => 'chi', 'CARHR003610' => 'chi', 'CARHR006290' => 'chi', 'CARHR006430' => 'chi', 'CARHR124110' => 'chi', 'CARHR203870' => 'chi', 'CARHR203880' => 'chi', 'CARHR203890' => 'chi', 'CARHR276880' => 'chi', 'Carub.0001s0346' => 'cru', 'Carub.0001s0347' => 'cru', 'Carub.0001s0607' => 'cru', 'Carub.0003s2768' => 'cru', 'Carub.0003s2769' => 'cru', 'Carub.0004s1178' => 'cru', 'Carub.0006s0806' => 'cru', 'Carub.0006s0807' => 'cru', 'Carub.0006s0808' => 'cru', 'Carub.0008s0501' => 'cru', 'Carub.0008s2379' => 'cru', 'Ca_08655_v3' => 'car', 'Ca_08922_v3' => 'car', 'Ca_08923_v3' => 'car', 'Ca_09119_v3' => 'car', 'Ca_09703_v3' => 'car', 'Ca_09705_v3' => 'car', 'Ca_09835_v3' => 'car', 'Ca_26403_v3' => 'car', 'Ca_30719_v3' => 'car', 'CBR_g17958' => 'cbr', 'CBR_g40516' => 'cbr', 'Cc00_g05350' => 'ccan', 'Cc01_g18690' => 'ccan', 'Cc03_g04830' => 'ccan', 'Cc03_g04850' => 'ccan', 'CDE02G4469' => 'cde', 'CDE06G0883' => 'cde', 'CDE06G1295' => 'cde', 'CDE06G1390' => 'cde', 'CDE07G0584' => 'cde', 'CDE07G1084' => 'cde', 'CDE08G1259' => 'cde', 'Cfa002341' => 'cfa', 'Cfa024337' => 'cfa', 'Ciclev10004749m.g' => 'ccl', 'Ciclev10006127m.g' => 'ccl', 'Ciclev10019720m.g' => 'ccl', 'Ciclev10022652m.g' => 'ccl', 'CiPaw.01G190400' => 'cil', 'CiPaw.01G190500' => 'cil', 'CiPaw.02G116400' => 'cil', 'CiPaw.02G116500' => 'cil', 'CiPaw.04G183000' => 'cil', 'CiPaw.04G183300' => 'cil', 'ClCG05G004610' => 'cla', 'ClCG05G004620' => 'cla', 'ClCG06G006730' => 'cla', 'ClCG06G006740' => 'cla', 'ClCG11G003690' => 'cla', 'COL.COLO4_08276' => 'col', 'COL.COLO4_08277' => 'col', 'COL.COLO4_15787' => 'col', 'COL.COLO4_15789' => 'col', 'Cpa.g.c44815' => 'cpa', 'Cpa.g.sc52.144' => 'cpa', 'Cpa.g.sc58.46' => 'cpa', 'Cpa.g.sc58.47' => 'cpa', 'Cre08.g360900' => 'cre', 'CsaV3_2G013030' => 'csa', 'CsaV3_2G013050' => 'csa', 'CsaV3_2G015620' => 'csa', 'CsaV3_3G012590' => 'csa', 'CsaV3_3G012600' => 'csa', 'CSS0001641' => 'camsi', 'CSS0008310' => 'camsi', 'CSS0013011' => 'camsi', 'CSS0017147' => 'camsi', 'CSS0022970' => 'camsi', 'CSS0025655' => 'camsi', 'CSS0028665' => 'camsi', 'CSS0029117' => 'camsi', 'CSS0032024' => 'camsi', 'CSS0039681' => 'camsi', 'CSS0046516' => 'camsi', 'CSS0050307' => 'camsi', 'DCAR_005871' => 'dca', 'DCAR_007342' => 'dca', 'DCAR_024228' => 'dca', 'DCAR_027277' => 'dca', 'DCAR_030718' => 'dca', 'Dinv20287' => 'din', 'Dinv22461' => 'din', 'Dinv22464' => 'din', 'Dinv29912' => 'din', 'Dinv29913' => 'din', 'Dinv34580' => 'din', 'Dinv34582' => 'din', 'Dinv44632' => 'din', 'Duzib052G0266' => 'dzi', 'Duzib133G0907' => 'dzi', 'Duzib133G1034' => 'dzi', 'Duzib138G0207' => 'dzi', 'Duzib138G0491' => 'dzi', 'Duzib151G0812' => 'dzi', 'Duzib151G1166' => 'dzi', 'Duzib168G0192' => 'dzi', 'Duzib211G0077' => 'dzi', 'Duzib212G0429' => 'dzi', 'Duzib212G0472' => 'dzi', 'ECA233G2617' => 'eca', 'ECA236G4188' => 'eca', 'ECA240G0936' => 'eca', 'ECA240G1129' => 'eca', 'ECA247G0623' => 'eca', 'EL10Ac5g10451' => 'bvu', 'EL10Ac5g10453' => 'bvu', 'EL10Ac5g10894' => 'bvu', 'Eucgr.H00192' => 'egr', 'Eucgr.H00193' => 'egr', 'Eucgr.H00194' => 'egr', 'Eucgr.J01562' => 'egr', 'Eucgr.K03301' => 'egr', 'FAN02G0632' => 'fan', 'FAN05G5378' => 'fan', 'FAN09G3247' => 'fan', 'FAN12G0435' => 'fan', 'FAN12G2426' => 'fan', 'FAN14G1707' => 'fan', 'FAN14G4725' => 'fan', 'FAN15G2071' => 'fan', 'FAN17G3065' => 'fan', 'FAN19G1376' => 'fan', 'FAN20G0354' => 'fan', 'FAN20G2429' => 'fan', 'FAN20G2658' => 'fan', 'FAN24G2343' => 'fan', 'FAN27G2362' => 'fan', 'FAN28G1765' => 'fan', 'FvH4_1g16020' => 'fve', 'FvH4_2g04890' => 'fve', 'FvH4_2g22270' => 'fve', 'FvH4_4g02630' => 'fve', 'FvH4_4g02640' => 'fve', 'FvH4_6g02650' => 'fve', 'Glyma.02G140600' => 'gma', 'Glyma.03G159900' => 'gma', 'Glyma.05G234800' => 'gma', 'Glyma.07G269600' => 'gma', 'Glyma.08G042300' => 'gma', 'Glyma.10G033500' => 'gma', 'Glyma.10G185200' => 'gma', 'Glyma.17G004300' => 'gma', 'Glyma.19G161900' => 'gma', 'Glyma.20G205100' => 'gma', 'Glyma.20G205200' => 'gma', 'Gohir.A01G139101' => 'ghi', 'Gohir.A02G035600' => 'ghi', 'Gohir.A02G117901' => 'ghi', 'Gohir.A07G210100' => 'ghi', 'Gohir.A07G210200' => 'ghi', 'Gohir.A08G061100' => 'ghi', 'Gohir.A09G223000' => 'ghi', 'Gohir.A09G223100' => 'ghi', 'Gohir.A10G113900' => 'ghi', 'Gohir.A10G114000' => 'ghi', 'Gohir.D02G042300' => 'ghi', 'Gohir.D07G216100' => 'ghi', 'Gohir.D07G216200' => 'ghi', 'Gohir.D08G070400' => 'ghi', 'Gohir.D09G225000' => 'ghi', 'Gohir.D09G225100' => 'ghi', 'Gohir.D10G152300' => 'ghi', 'Gohir.D10G153200' => 'ghi', 'Gohir.D11G133701' => 'ghi', 'Gorai.004G074100' => 'gra', 'Gorai.005G046800' => 'gra', 'Gorai.006G246500' => 'gra', 'Gorai.006G246600' => 'gra', 'Gorai.007G142900' => 'gra', 'Gorai.011G171000' => 'gra', 'Gorai.011G171100' => 'gra', 'Gorai.013G104300' => 'gra', 'Gorai.013G104400' => 'gra', 'GSVIVG01000754001' => 'vvi', 'GSVIVG01000756001' => 'vvi', 'GSVIVG01010903001' => 'vvi', 'GSVIVG01017623001' => 'vvi', 'GSVIVG01018113001' => 'vvi', 'GSVIVG01018116001' => 'vvi', 'GSVIVG01018118001' => 'vvi', 'HanXRQChr03g0076211' => 'han', 'HanXRQChr03g0092431' => 'han', 'HanXRQChr03g0092441' => 'han', 'HanXRQChr03g0092591' => 'han', 'HanXRQChr03g0092671' => 'han', 'HanXRQChr03g0092681' => 'han', 'HanXRQChr03g0092691' => 'han', 'HanXRQChr03g0092701' => 'han', 'HanXRQChr03g0092721' => 'han', 'HanXRQChr03g0092731' => 'han', 'HanXRQChr04g0113681' => 'han', 'HanXRQChr10g0281371' => 'han', 'HanXRQChr11g0337141' => 'han', 'HanXRQChr13g0424521' => 'han', 'HanXRQChr13g0424531' => 'han', 'HanXRQChr13g0424541' => 'han', 'HanXRQChr16g0498221' => 'han', 'Haze_04377' => 'cav', 'Haze_11298' => 'cav', 'Haze_24547' => 'cav', 'Haze_24550' => 'cav', 'Haze_26587' => 'cav', 'Hma1.2p1_0650F.1_g195410' => 'hma', 'Hma1.2p1_0893F.1_g233470' => 'hma', 'HPP92_006508' => 'vpl', 'HPP92_024780' => 'vpl', 'Hund02688' => 'sun', 'Hund09380' => 'sun', 'Hund09381' => 'sun', 'Hund09832' => 'sun', 'Hund09833' => 'sun', 'Hund11351' => 'sun', 'Hund11513' => 'sun', 'Lalb_Chr06g0162591' => 'lal', 'Lalb_Chr06g0162601' => 'lal', 'Lalb_Chr06g0169321' => 'lal', 'Lalb_Chr09g0330951' => 'lal', 'Lalb_Chr16g0387631' => 'lal', 'Lalb_Chr21g0306241' => 'lal', 'Lalb_Chr25g0290051' => 'lal', 'Lalb_Chr25g0290061' => 'lal', 'Lalb_Chr25g0290071' => 'lal', 'Lj1g0003876' => 'lja', 'Lj1P1207T36' => 'lonja', 'Lj2C1156G12' => 'lonja', 'Lj3A793G39' => 'lonja', 'Lj3C580G2' => 'lonja', 'Lj3C780G2' => 'lonja', 'Lj3C780T4' => 'lonja', 'Lj3C793G9' => 'lonja', 'Lj4g0012960' => 'lja', 'Lj5g0021252' => 'lja', 'Lj5g0021484' => 'lja', 'Lj5g0024528' => 'lja', 'Lj6A399T12' => 'lonja', 'Lj6A656G65' => 'lonja', 'Lsat_1_v5_gn_3_125500' => 'lsa', 'Lsat_1_v5_gn_3_125540' => 'lsa', 'Lsat_1_v5_gn_5_72701' => 'lsa', 'Lsat_1_v5_gn_8_91560' => 'lsa', 'Lsat_1_v5_gn_9_9640' => 'lsa', 'Manes.01G200600' => 'mes', 'Manes.01G200700' => 'mes', 'Manes.03G168900' => 'mes', 'Manes.03G169000' => 'mes', 'Manes.05G085801' => 'mes', 'Manes.05G086200' => 'mes', 'Manes.15G036700' => 'mes', 'Manes.15G036900' => 'mes', 'Mapoly0004s0172' => 'mpo', 'Mapoly0023s0001' => 'mpo', 'Mapoly0142s0012' => 'mpo', 'MBI01_g32854_MAGBIO' => 'mbi', 'MBI11_g24427_MAGBIO' => 'mbi', 'MBI11_g47319_MAGBIO' => 'mbi', 'MCO01G433' => 'mco', 'MD00G1187800' => 'mdo', 'MD04G1226500' => 'mdo', 'MD05G1203900' => 'mdo', 'MD10G1191100' => 'mdo', 'MD12G1243500' => 'mdo', 'MD13G1207000' => 'mdo', 'MD13G1207100' => 'mdo', 'MD16G1208600' => 'mdo', 'Medtr1g050352' => 'mtr', 'Medtr1g070385' => 'mtr', 'Medtr1g070450' => 'mtr', 'Medtr1g075200' => 'mtr', 'Medtr1g075250' => 'mtr', 'Medtr1g075260' => 'mtr', 'Medtr1g475250' => 'mtr', 'Medtr4g075450' => 'mtr', 'Medtr7g096300' => 'mtr', 'Medtr8g105110' => 'mtr', 'MELO3C006470.2' => 'cme', 'MELO3C006471.2' => 'cme', 'MELO3C020772.2' => 'cme', 'MELO3C026780.2' => 'cme', 'MELO3C026781.2' => 'cme', 'Migut.D00390' => 'egut', 'Migut.G00435' => 'egut', 'Migut.G00436' => 'egut', 'Migut.G00718' => 'egut', 'MSTRG.21891' => 'ama', 'MSTRG.26910' => 'ama', 'MSTRG.4099' => 'ama', 'MSTRG.9925' => 'ama', 'Nitab4.5_0000165g0010' => 'nta', 'Nitab4.5_0000209g0180' => 'nta', 'Nitab4.5_0000244g0440' => 'nta', 'Nitab4.5_0000525g0220' => 'nta', 'Nitab4.5_0001597g0020' => 'nta', 'Nitab4.5_0001878g0040' => 'nta', 'Nitab4.5_0001878g0060' => 'nta', 'Nitab4.5_0002838g0100' => 'nta', 'Nitab4.5_0002838g0120' => 'nta', 'Nitab4.5_0004798g0030' => 'nta', 'Nitab4.5_0005420g0010' => 'nta', 'Nitab4.5_0005507g0010' => 'nta', 'Nitab4.5_0005574g0020' => 'nta', 'Nitab4.5_0005838g0010' => 'nta', 'Nitab4.5_0010580g0020' => 'nta', 'Nn1g02599' => 'nnu', 'Nn1g02608' => 'nnu', 'Nn3g17742' => 'nnu', 'Nn3g19534' => 'nnu', 'Nn3g19535' => 'nnu', 'Oeu008790.1' => 'oeu', 'Oeu008792.1' => 'oeu', 'Oeu032590.1' => 'oeu', 'Oeu035349.1' => 'oeu', 'Oeu049791.1' => 'oeu', 'Os01g0774500' => 'osa', 'Os03g0628800' => 'osa', 'Os03g0798600' => 'osa', 'Os05g0508800' => 'osa', 'Peaxi162Scf00036g02018' => 'pax', 'Peaxi162Scf00578g00032' => 'pax', 'Peaxi162Scf00578g00317' => 'pax', 'Peaxi162Scf00785g00114' => 'pax', 'Peaxi162Scf00813g00119' => 'pax', 'Peaxi162Scf00906g00227' => 'pax', 'PGR004G0875' => 'pgr', 'PGR004G2424' => 'pgr', 'PGR031G1239' => 'pgr', 'PGR031G2474' => 'pgr', 'PGR044G0423' => 'pgr', 'PGSC0003DMG400001128' => 'stu', 'PGSC0003DMG400007336' => 'stu', 'PGSC0003DMG400016318' => 'stu', 'PGSC0003DMG400016319' => 'stu', 'PGSC0003DMG400018074' => 'stu', 'Phvul.001G157700' => 'pvu', 'Phvul.002G148550' => 'pvu', 'Phvul.002G320200' => 'pvu', 'Phvul.003G089200' => 'pvu', 'Phvul.007G126000' => 'pvu', 'Phvul.007G126100' => 'pvu', 'Phvul.007G178000' => 'pvu', 'Phvul.007G178200' => 'pvu', 'Potri.002G043000' => 'ptr', 'Potri.002G043200' => 'ptr', 'Potri.003G123750' => 'ptr', 'Potri.005G055401' => 'ptr', 'Potri.005G219700' => 'ptr', 'Potri.005G220000' => 'ptr', 'Potri.008G161901' => 'ptr', 'Potri.008G162000' => 'ptr', 'Potri.008G162400' => 'ptr', 'Potri.010G076900' => 'ptr', 'Pp3c12_9180' => 'ppa', 'Pp3c13_19770' => 'ppa', 'Pp3c14_22950' => 'ppa', 'Pp3c16_12160' => 'ppa', 'Pp3c27_7820' => 'ppa', 'Pp3c2_3490' => 'ppa', 'Pp3c3_23700' => 'ppa', 'Pp3c3_36520' => 'ppa', 'Pp3c4_15250' => 'ppa', 'PRCOL_00007002' => 'pco', 'Prupe.1G030600' => 'ppe', 'Prupe.1G030700' => 'ppe', 'Prupe.6G345200' => 'ppe', 'Prupe.8G230300' => 'ppe', 'Prupe.8G230500' => 'ppe', 'Psat3g059600' => 'psa', 'Psat5g200920' => 'psa', 'Psat6g056440' => 'psa', 'Psat6g057360' => 'psa', 'Psat6g134120' => 'psa', 'Psat6g134160' => 'psa', 'Psat7g008640' => 'psa', 'Psat7g185240' => 'psa', 'PSO017G1330' => 'pso', 'PSO063G6097' => 'pso', 'PSO170G0835' => 'pso', 'PSO170G2499' => 'pso', 'PSO210G5058' => 'pso', 'PSO210G6154' => 'pso', 'PSO585G0031' => 'pso', 'PSO832G0264' => 'pso', 'PSO832G4288' => 'pso', 'QL03p027355' => 'qlo', 'QL03p027430' => 'qlo', 'QL04p081380' => 'qlo', 'QL06p015642' => 'qlo', 'QL06p015650' => 'qlo', 'QL06p015686' => 'qlo', 'QL12p042927' => 'qlo', 'QL93p1863_0035' => 'qlo', 'RcHm_v2.0_Chr3g0450581' => 'rch', 'RcHm_v2.0_Chr4g0390371' => 'rch', 'RcHm_v2.0_Chr4g0390381' => 'rch', 'RcHm_v2.0_Chr4g0390491' => 'rch', 'RcHm_v2.0_Chr4g0390501' => 'rch', 'RcHm_v2.0_Chr6g0289231' => 'rch', 'Rhsim04G0190400' => 'rsi', 'Rhsim04G0190500' => 'rsi', 'Rhsim04G0190600' => 'rsi', 'Rhsim13G0031400' => 'rsi', 'Rhsim13G0165600' => 'rsi', 'RhsimUnG0114600' => 'rsi', 'RhsimUnG0114700' => 'rsi', 'Sabra02G0034800' => 'sbr', 'Sabra02G0035100' => 'sbr', 'Sabra05G0168600' => 'sbr', 'Sabra05G0168800' => 'sbr', 'Sabra08G0123700' => 'sbr', 'Sabra10G0031900' => 'sbr', 'Sabra13G0039000' => 'sbr', 'SalBow2G0782' => 'sbo', 'SalBow2G1403' => 'sbo', 'SalBow4G0074' => 'sbo', 'SalBow4G2635' => 'sbo', 'SalBow5G3010' => 'sbo', 'Sc05g0000870' => 'sci', 'Sc05g0000890' => 'sci', 'Sc13g0005000' => 'sci', 'Sc13g0005030' => 'sci', 'Sc19g0003790' => 'sci', 'Sc19g0003800' => 'sci', 'Sed0003467' => 'sed', 'Sed0009355' => 'sed', 'Sed0009894' => 'sed', 'Sed0011972' => 'sed', 'Sed0021483' => 'sed', 'Sed0021750' => 'sed', 'Sed0026279' => 'sed', 'SEGI_05312' => 'sgi', 'SEGI_10112' => 'sgi', 'SEGI_15835' => 'sgi', 'SEGI_30386' => 'sgi', 'SEGI_34122' => 'sgi', 'SEGI_35063' => 'sgi', 'SGA_v2.0_scaffold101G29794' => 'sas', 'SGA_v2.0_scaffold1G00573' => 'sas', 'SGA_v2.0_scaffold79G25637' => 'sas', 'SGA_v2.0_scaffold88G27283' => 'sas', 'SGA_v2.0_scaffold88G27285' => 'sas', 'SGA_v2.0_scaffold88G27331' => 'sas', 'SHI09937' => 'shi', 'SMO119G0302' => 'smo', 'SMO137G0231' => 'smo', 'SMO367G1151' => 'smo', 'Solyc02g082000.3' => 'sly', 'Solyc06g031670.3' => 'sly', 'Solyc06g053810.3' => 'sly', 'Solyc07g025457.1' => 'sly', 'Solyc08g059740.1' => 'sly', 'Solyc08g059750.3' => 'sly', 'Solyc09g083370.3' => 'sly', 'Solyc12g038950.3' => 'sly', 'Sopen02g026630' => 'spe', 'Sopen06g018930' => 'spe', 'Sopen06g018940' => 'spe', 'Sopen08g009460' => 'spe', 'Sopen09g032290' => 'spe', 'Sp1g03080' => 'spa', 'Sp1g03090' => 'spa', 'Sp1g05480' => 'spa', 'Sp2g07860' => 'spa', 'Sp2g08430' => 'spa', 'Sp2g08440' => 'spa', 'Sp2g26200' => 'spa', 'Sp4g13170' => 'spa', 'Sp6g33840' => 'spa', 'SpUn1204_0010' => 'spa', 'TAR365G0908' => 'tar', 'TAR381G1270' => 'tar', 'TAR381G1651' => 'tar', 'TAR625G1131' => 'tar', 'TAR633G0962' => 'tar', 'TAR633G1729' => 'tar', 'TAR633G1864' => 'tar', 'TAR636G0221' => 'tar', 'TAR636G0314' => 'tar', 'TAR636G3202' => 'tar', 'THA.LOC104800805' => 'tha', 'THA.LOC104801096' => 'tha', 'THA.LOC104801555' => 'tha', 'THA.LOC104808491' => 'tha', 'THA.LOC104808595' => 'tha', 'THA.LOC104815985' => 'tha', 'THA.LOC104822250' => 'tha', 'THA.LOC104826071' => 'tha', 'Thecc.01G265200' => 'tca', 'Thecc.01G265300' => 'tca', 'Thecc.01G265700' => 'tca', 'Thecc.03G109100' => 'tca', 'Thecc.04G245900' => 'tca', 'Thecc.04G246000' => 'tca', 'Thhalv10003334m.g' => 'esa', 'Thhalv10005508m.g' => 'esa', 'Thhalv10005643m.g' => 'esa', 'Thhalv10007316m.g' => 'esa', 'Thhalv10009006m.g' => 'esa', 'Thhalv10009309m.g' => 'esa', 'Thhalv10014917m.g' => 'esa', 'Thhalv10014919m.g' => 'esa', 'Thhalv10015393m.g' => 'esa', 'Thhalv10016515m.g' => 'esa', 'Thhalv10029242m.g' => 'esa', 'TPR.G16654' => 'tpr', 'TPR.G20589' => 'tpr', 'TPR.G23029' => 'tpr', 'TPR.G27731' => 'tpr', 'TPR.G28889' => 'tpr', 'TPR.G28899' => 'tpr', 'TPR.G30846' => 'tpr', 'TPR.G5452' => 'tpr', 'TPR.G5713' => 'tpr', 'TPR.G9046' => 'tpr', 'TPR.G9061' => 'tpr', 'TWI09G1075' => 'twi', 'TWI12G0806' => 'twi', 'TWI18G0108' => 'twi', 'TWI53G1361' => 'twi', 'TWI73G0185' => 'twi', 'TWI73G0427' => 'twi', 'unitig_37.g12001' => 'ugi', 'unitig_747.g21660' => 'ugi', 'unitig_748.g7232' => 'ugi', 'unitig_748.g7315' => 'ugi', 'unitig_85.g27262' => 'ugi', 'unitig_92.g28220' => 'ugi', 'vmacro02632' => 'vma', 'vmacro08410' => 'vma', 'vmacro08411' => 'vma', 'vmacro15407' => 'vma', 'VMungo0251G3619' => 'vmu', 'VMungo0720G1204' => 'vmu', 'VMungo0720G1918' => 'vmu', 'VMungo0720G2387' => 'vmu', 'VMungo0720G2961' => 'vmu', 'VMungo1215G2154' => 'vmu', 'VMungo1383G2411' => 'vmu', 'Zm00001eb051130' => 'zma', 'Zm00001eb116830' => 'zma', 'Zm00001eb116850' => 'zma', 'Zm00001eb151740' => 'zma', 'Zm00001eb292360' => 'zma', 'Zm00001eb301640' => 'zma' ), 'gf_id' => 'HOM05D000856', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000856' ), 'data_identifier' => 'HOM05D000856', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000856', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p00010' => 'bna', 'A03p04160' => 'bna', 'A03p17160' => 'bna', 'A04p23370' => 'bna', 'A05p14860' => 'bna', 'A08p37020' => 'bna', 'A09p08050' => 'bna', 'A09p66800' => 'bna', 'A09p67940' => 'bna', 'A10p02680' => 'bna', 'A10p05320' => 'bna', 'Aa31LG1G20560' => 'aar', 'Aa31LG1G20610' => 'aar', 'Aa31LG1G7810' => 'aar', 'Aa31LG5G3590' => 'aar', 'Aa31LG5G6140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3819' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4683' => 'aag', 'Actinidia04480' => 'ach', 'Actinidia05466' => 'ach', 'Actinidia08445' => 'ach', 'Actinidia21170' => 'ach', 'Actinidia24812' => 'ach', 'Actinidia24951' => 'ach', 'Actinidia40088' => 'ach', 'Ah.02g111660' => 'amhyb', 'Ah.11g048900' => 'amhyb', 'Ah.11g049910' => 'amhyb', 'AL1G13870' => 'aly', 'AL1G13880' => 'aly', 'AL1G16760' => 'aly', 'AL390U10020' => 'aly', 'AL4G25520' => 'aly', 'AL6G19890' => 'aly', 'AL6G19900' => 'aly', 'AL6G19910' => 'aly', 'AL8G40100' => 'aly', 'Aqoxy2G03562' => 'aox', 'Aqoxy5G00316' => 'aox', 'Aqoxy5G00926' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1628KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1H403S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2FU6SJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.882I6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8YRY2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YN1SN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AF70II' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZA8L1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F916KL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHRD8H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KTZ8QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S22EMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8M29T' => 'arhy', 'AT1G04270' => 'ath', 'AT1G04280' => 'ath', 'AT1G06750' => 'ath', 'AT1G33850' => 'ath', 'AT2G30630' => 'ath', 'AT5G09490' => 'ath', 'AT5G09500' => 'ath', 'AT5G09510' => 'ath', 'AT5G43640' => 'ath', 'AT5G63070' => 'ath', 'ATR0605G315' => 'atr', 'Atru.chr11.175' => 'acertr', 'Atru.chr11.653' => 'acertr', 'Atru.chr3.1616' => 'acertr', 'Atru.chr4.2230' => 'acertr', 'Atru.chr4.2232' => 'acertr', 'Atru.chr5.1598' => 'acertr', 'Atru.chr5.1600' => 'acertr', 'Atru.chr5.2188' => 'acertr', 'AUR62008326' => 'cqu', 'AUR62011922' => 'cqu', 'AUR62011924' => 'cqu', 'AUR62021771' => 'cqu', 'AUR62032237' => 'cqu', 'AUR62032240' => 'cqu', 'BcaB01g05572' => 'bca', 'BcaB02g10337' => 'bca', 'BcaB04g19944' => 'bca', 'BcaB05g21548' => 'bca', 'BcaB05g21549' => 'bca', 'BcaB05g23227' => 'bca', 'BcaB06g26256' => 'bca', 'BcaB06g26257' => 'bca', 'BcaB06g28379' => 'bca', 'BcaC02g11159' => 'bca', 'BcaC03g13258' => 'bca', 'BcaC03g13259' => 'bca', 'BcaC05g24456' => 'bca', 'BcaC05g24457' => 'bca', 'BcaC07g36922' => 'bca', 'BcaC07g36923' => 'bca', 'BcaC07g42050' => 'bca', 'BcaC07g42176' => 'bca', 'BcaC07g42195' => 'bca', 'BcaC07g42196' => 'bca', 'BcaNung06674' => 'bca', 'BolC2t06351H' => 'bol', 'BolC2t06352H' => 'bol', 'BolC3t12993H' => 'bol', 'BolC4t23525H' => 'bol', 'BolC4t27475H' => 'bol', 'BolC5t29025H' => 'bol', 'BolC5t29026H' => 'bol', 'BolC8t46898H' => 'bol', 'BolC8t46899H' => 'bol', 'BolC8t52630H' => 'bol', 'BolC8t52765H' => 'bol', 'BolC9t53824H' => 'bol', 'BraA03t09760Z' => 'bra', 'BraA03t10990Z' => 'bra', 'BraA05t20413Z' => 'bra', 'BraA08t35602Z' => 'bra', 'BraA09t36458Z' => 'bra', 'BraA09t42018Z' => 'bra', 'BraA09t42129Z' => 'bra', 'BraA10t42536Z' => 'bra', 'BraA10t42537Z' => 'bra', 'C01p10690' => 'bna', 'C02p03890' => 'bna', 'C02p03900' => 'bna', 'C03p04620' => 'bna', 'C04p19870' => 'bna', 'C04p59670' => 'bna', 'C05p02460' => 'bna', 'C05p02470' => 'bna', 'C08p00980' => 'bna', 'C08p00990' => 'bna', 'C08p51030' => 'bna', 'C08p52360' => 'bna', 'C09p09120' => 'bna', 'CAN.G19.15' => 'can', 'CAN.G251.10' => 'can', 'CAN.G251.9' => 'can', 'CAN.G398.24' => 'can', 'CAN.G410.32' => 'can', 'CAN.G881.2' => 'can', 'CANSAT01G3025' => 'cansat', 'CANSAT78G1211' => 'cansat', 'CANSAT78G1218' => 'cansat', 'CANSAT78G1521' => 'cansat', 'CANSAT78G1670' => 'cansat', 'CARHR003600' => 'chi', 'CARHR003610' => 'chi', 'CARHR006290' => 'chi', 'CARHR006430' => 'chi', 'CARHR124110' => 'chi', 'CARHR203870' => 'chi', 'CARHR203880' => 'chi', 'CARHR203890' => 'chi', 'CARHR276880' => 'chi', 'Carub.0001s0346' => 'cru', 'Carub.0001s0347' => 'cru', 'Carub.0001s0607' => 'cru', 'Carub.0003s2768' => 'cru', 'Carub.0003s2769' => 'cru', 'Carub.0004s1178' => 'cru', 'Carub.0006s0806' => 'cru', 'Carub.0006s0807' => 'cru', 'Carub.0006s0808' => 'cru', 'Carub.0008s0501' => 'cru', 'Carub.0008s2379' => 'cru', 'Ca_08655_v3' => 'car', 'Ca_08922_v3' => 'car', 'Ca_08923_v3' => 'car', 'Ca_09119_v3' => 'car', 'Ca_09703_v3' => 'car', 'Ca_09705_v3' => 'car', 'Ca_09835_v3' => 'car', 'Ca_26403_v3' => 'car', 'Ca_30719_v3' => 'car', 'CBR_g17958' => 'cbr', 'CBR_g40516' => 'cbr', 'Cc00_g05350' => 'ccan', 'Cc01_g18690' => 'ccan', 'Cc03_g04830' => 'ccan', 'Cc03_g04850' => 'ccan', 'CDE02G4469' => 'cde', 'CDE06G0883' => 'cde', 'CDE06G1295' => 'cde', 'CDE06G1390' => 'cde', 'CDE07G0584' => 'cde', 'CDE07G1084' => 'cde', 'CDE08G1259' => 'cde', 'Cfa002341' => 'cfa', 'Cfa024337' => 'cfa', 'Ciclev10004749m.g' => 'ccl', 'Ciclev10006127m.g' => 'ccl', 'Ciclev10019720m.g' => 'ccl', 'Ciclev10022652m.g' => 'ccl', 'CiPaw.01G190400' => 'cil', 'CiPaw.01G190500' => 'cil', 'CiPaw.02G116400' => 'cil', 'CiPaw.02G116500' => 'cil', 'CiPaw.04G183000' => 'cil', 'CiPaw.04G183300' => 'cil', 'ClCG05G004610' => 'cla', 'ClCG05G004620' => 'cla', 'ClCG06G006730' => 'cla', 'ClCG06G006740' => 'cla', 'ClCG11G003690' => 'cla', 'COL.COLO4_08276' => 'col', 'COL.COLO4_08277' => 'col', 'COL.COLO4_15787' => 'col', 'COL.COLO4_15789' => 'col', 'Cpa.g.c44815' => 'cpa', 'Cpa.g.sc52.144' => 'cpa', 'Cpa.g.sc58.46' => 'cpa', 'Cpa.g.sc58.47' => 'cpa', 'Cre08.g360900' => 'cre', 'CsaV3_2G013030' => 'csa', 'CsaV3_2G013050' => 'csa', 'CsaV3_2G015620' => 'csa', 'CsaV3_3G012590' => 'csa', 'CsaV3_3G012600' => 'csa', 'CSS0001641' => 'camsi', 'CSS0008310' => 'camsi', 'CSS0013011' => 'camsi', 'CSS0017147' => 'camsi', 'CSS0022970' => 'camsi', 'CSS0025655' => 'camsi', 'CSS0028665' => 'camsi', 'CSS0029117' => 'camsi', 'CSS0032024' => 'camsi', 'CSS0039681' => 'camsi', 'CSS0046516' => 'camsi', 'CSS0050307' => 'camsi', 'DCAR_005871' => 'dca', 'DCAR_007342' => 'dca', 'DCAR_024228' => 'dca', 'DCAR_027277' => 'dca', 'DCAR_030718' => 'dca', 'Dinv20287' => 'din', 'Dinv22461' => 'din', 'Dinv22464' => 'din', 'Dinv29912' => 'din', 'Dinv29913' => 'din', 'Dinv34580' => 'din', 'Dinv34582' => 'din', 'Dinv44632' => 'din', 'Duzib052G0266' => 'dzi', 'Duzib133G0907' => 'dzi', 'Duzib133G1034' => 'dzi', 'Duzib138G0207' => 'dzi', 'Duzib138G0491' => 'dzi', 'Duzib151G0812' => 'dzi', 'Duzib151G1166' => 'dzi', 'Duzib168G0192' => 'dzi', 'Duzib211G0077' => 'dzi', 'Duzib212G0429' => 'dzi', 'Duzib212G0472' => 'dzi', 'ECA233G2617' => 'eca', 'ECA236G4188' => 'eca', 'ECA240G0936' => 'eca', 'ECA240G1129' => 'eca', 'ECA247G0623' => 'eca', 'EL10Ac5g10451' => 'bvu', 'EL10Ac5g10453' => 'bvu', 'EL10Ac5g10894' => 'bvu', 'Eucgr.H00192' => 'egr', 'Eucgr.H00193' => 'egr', 'Eucgr.H00194' => 'egr', 'Eucgr.J01562' => 'egr', 'Eucgr.K03301' => 'egr', 'FAN02G0632' => 'fan', 'FAN05G5378' => 'fan', 'FAN09G3247' => 'fan', 'FAN12G0435' => 'fan', 'FAN12G2426' => 'fan', 'FAN14G1707' => 'fan', 'FAN14G4725' => 'fan', 'FAN15G2071' => 'fan', 'FAN17G3065' => 'fan', 'FAN19G1376' => 'fan', 'FAN20G0354' => 'fan', 'FAN20G2429' => 'fan', 'FAN20G2658' => 'fan', 'FAN24G2343' => 'fan', 'FAN27G2362' => 'fan', 'FAN28G1765' => 'fan', 'FvH4_1g16020' => 'fve', 'FvH4_2g04890' => 'fve', 'FvH4_2g22270' => 'fve', 'FvH4_4g02630' => 'fve', 'FvH4_4g02640' => 'fve', 'FvH4_6g02650' => 'fve', 'Glyma.02G140600' => 'gma', 'Glyma.03G159900' => 'gma', 'Glyma.05G234800' => 'gma', 'Glyma.07G269600' => 'gma', 'Glyma.08G042300' => 'gma', 'Glyma.10G033500' => 'gma', 'Glyma.10G185200' => 'gma', 'Glyma.17G004300' => 'gma', 'Glyma.19G161900' => 'gma', 'Glyma.20G205100' => 'gma', 'Glyma.20G205200' => 'gma', 'Gohir.A01G139101' => 'ghi', 'Gohir.A02G035600' => 'ghi', 'Gohir.A02G117901' => 'ghi', 'Gohir.A07G210100' => 'ghi', 'Gohir.A07G210200' => 'ghi', 'Gohir.A08G061100' => 'ghi', 'Gohir.A09G223000' => 'ghi', 'Gohir.A09G223100' => 'ghi', 'Gohir.A10G113900' => 'ghi', 'Gohir.A10G114000' => 'ghi', 'Gohir.D02G042300' => 'ghi', 'Gohir.D07G216100' => 'ghi', 'Gohir.D07G216200' => 'ghi', 'Gohir.D08G070400' => 'ghi', 'Gohir.D09G225000' => 'ghi', 'Gohir.D09G225100' => 'ghi', 'Gohir.D10G152300' => 'ghi', 'Gohir.D10G153200' => 'ghi', 'Gohir.D11G133701' => 'ghi', 'Gorai.004G074100' => 'gra', 'Gorai.005G046800' => 'gra', 'Gorai.006G246500' => 'gra', 'Gorai.006G246600' => 'gra', 'Gorai.007G142900' => 'gra', 'Gorai.011G171000' => 'gra', 'Gorai.011G171100' => 'gra', 'Gorai.013G104300' => 'gra', 'Gorai.013G104400' => 'gra', 'GSVIVG01000754001' => 'vvi', 'GSVIVG01000756001' => 'vvi', 'GSVIVG01010903001' => 'vvi', 'GSVIVG01017623001' => 'vvi', 'GSVIVG01018113001' => 'vvi', 'GSVIVG01018116001' => 'vvi', 'GSVIVG01018118001' => 'vvi', 'HanXRQChr03g0076211' => 'han', 'HanXRQChr03g0092431' => 'han', 'HanXRQChr03g0092441' => 'han', 'HanXRQChr03g0092591' => 'han', 'HanXRQChr03g0092671' => 'han', 'HanXRQChr03g0092681' => 'han', 'HanXRQChr03g0092691' => 'han', 'HanXRQChr03g0092701' => 'han', 'HanXRQChr03g0092721' => 'han', 'HanXRQChr03g0092731' => 'han', 'HanXRQChr04g0113681' => 'han', 'HanXRQChr10g0281371' => 'han', 'HanXRQChr11g0337141' => 'han', 'HanXRQChr13g0424521' => 'han', 'HanXRQChr13g0424531' => 'han', 'HanXRQChr13g0424541' => 'han', 'HanXRQChr16g0498221' => 'han', 'Haze_04377' => 'cav', 'Haze_11298' => 'cav', 'Haze_24547' => 'cav', 'Haze_24550' => 'cav', 'Haze_26587' => 'cav', 'Hma1.2p1_0650F.1_g195410' => 'hma', 'Hma1.2p1_0893F.1_g233470' => 'hma', 'HPP92_006508' => 'vpl', 'HPP92_024780' => 'vpl', 'Hund02688' => 'sun', 'Hund09380' => 'sun', 'Hund09381' => 'sun', 'Hund09832' => 'sun', 'Hund09833' => 'sun', 'Hund11351' => 'sun', 'Hund11513' => 'sun', 'Lalb_Chr06g0162591' => 'lal', 'Lalb_Chr06g0162601' => 'lal', 'Lalb_Chr06g0169321' => 'lal', 'Lalb_Chr09g0330951' => 'lal', 'Lalb_Chr16g0387631' => 'lal', 'Lalb_Chr21g0306241' => 'lal', 'Lalb_Chr25g0290051' => 'lal', 'Lalb_Chr25g0290061' => 'lal', 'Lalb_Chr25g0290071' => 'lal', 'Lj1g0003876' => 'lja', 'Lj1P1207T36' => 'lonja', 'Lj2C1156G12' => 'lonja', 'Lj3A793G39' => 'lonja', 'Lj3C580G2' => 'lonja', 'Lj3C780G2' => 'lonja', 'Lj3C780T4' => 'lonja', 'Lj3C793G9' => 'lonja', 'Lj4g0012960' => 'lja', 'Lj5g0021252' => 'lja', 'Lj5g0021484' => 'lja', 'Lj5g0024528' => 'lja', 'Lj6A399T12' => 'lonja', 'Lj6A656G65' => 'lonja', 'Lsat_1_v5_gn_3_125500' => 'lsa', 'Lsat_1_v5_gn_3_125540' => 'lsa', 'Lsat_1_v5_gn_5_72701' => 'lsa', 'Lsat_1_v5_gn_8_91560' => 'lsa', 'Lsat_1_v5_gn_9_9640' => 'lsa', 'Manes.01G200600' => 'mes', 'Manes.01G200700' => 'mes', 'Manes.03G168900' => 'mes', 'Manes.03G169000' => 'mes', 'Manes.05G085801' => 'mes', 'Manes.05G086200' => 'mes', 'Manes.15G036700' => 'mes', 'Manes.15G036900' => 'mes', 'Mapoly0004s0172' => 'mpo', 'Mapoly0023s0001' => 'mpo', 'Mapoly0142s0012' => 'mpo', 'MBI01_g32854_MAGBIO' => 'mbi', 'MBI11_g24427_MAGBIO' => 'mbi', 'MBI11_g47319_MAGBIO' => 'mbi', 'MCO01G433' => 'mco', 'MD00G1187800' => 'mdo', 'MD04G1226500' => 'mdo', 'MD05G1203900' => 'mdo', 'MD10G1191100' => 'mdo', 'MD12G1243500' => 'mdo', 'MD13G1207000' => 'mdo', 'MD13G1207100' => 'mdo', 'MD16G1208600' => 'mdo', 'Medtr1g050352' => 'mtr', 'Medtr1g070385' => 'mtr', 'Medtr1g070450' => 'mtr', 'Medtr1g075200' => 'mtr', 'Medtr1g075250' => 'mtr', 'Medtr1g075260' => 'mtr', 'Medtr1g475250' => 'mtr', 'Medtr4g075450' => 'mtr', 'Medtr7g096300' => 'mtr', 'Medtr8g105110' => 'mtr', 'MELO3C006470.2' => 'cme', 'MELO3C006471.2' => 'cme', 'MELO3C020772.2' => 'cme', 'MELO3C026780.2' => 'cme', 'MELO3C026781.2' => 'cme', 'Migut.D00390' => 'egut', 'Migut.G00435' => 'egut', 'Migut.G00436' => 'egut', 'Migut.G00718' => 'egut', 'MSTRG.21891' => 'ama', 'MSTRG.26910' => 'ama', 'MSTRG.4099' => 'ama', 'MSTRG.9925' => 'ama', 'Nitab4.5_0000165g0010' => 'nta', 'Nitab4.5_0000209g0180' => 'nta', 'Nitab4.5_0000244g0440' => 'nta', 'Nitab4.5_0000525g0220' => 'nta', 'Nitab4.5_0001597g0020' => 'nta', 'Nitab4.5_0001878g0040' => 'nta', 'Nitab4.5_0001878g0060' => 'nta', 'Nitab4.5_0002838g0100' => 'nta', 'Nitab4.5_0002838g0120' => 'nta', 'Nitab4.5_0004798g0030' => 'nta', 'Nitab4.5_0005420g0010' => 'nta', 'Nitab4.5_0005507g0010' => 'nta', 'Nitab4.5_0005574g0020' => 'nta', 'Nitab4.5_0005838g0010' => 'nta', 'Nitab4.5_0010580g0020' => 'nta', 'Nn1g02599' => 'nnu', 'Nn1g02608' => 'nnu', 'Nn3g17742' => 'nnu', 'Nn3g19534' => 'nnu', 'Nn3g19535' => 'nnu', 'Oeu008790.1' => 'oeu', 'Oeu008792.1' => 'oeu', 'Oeu032590.1' => 'oeu', 'Oeu035349.1' => 'oeu', 'Oeu049791.1' => 'oeu', 'Os01g0774500' => 'osa', 'Os03g0628800' => 'osa', 'Os03g0798600' => 'osa', 'Os05g0508800' => 'osa', 'Peaxi162Scf00036g02018' => 'pax', 'Peaxi162Scf00578g00032' => 'pax', 'Peaxi162Scf00578g00317' => 'pax', 'Peaxi162Scf00785g00114' => 'pax', 'Peaxi162Scf00813g00119' => 'pax', 'Peaxi162Scf00906g00227' => 'pax', 'PGR004G0875' => 'pgr', 'PGR004G2424' => 'pgr', 'PGR031G1239' => 'pgr', 'PGR031G2474' => 'pgr', 'PGR044G0423' => 'pgr', 'PGSC0003DMG400001128' => 'stu', 'PGSC0003DMG400007336' => 'stu', 'PGSC0003DMG400016318' => 'stu', 'PGSC0003DMG400016319' => 'stu', 'PGSC0003DMG400018074' => 'stu', 'Phvul.001G157700' => 'pvu', 'Phvul.002G148550' => 'pvu', 'Phvul.002G320200' => 'pvu', 'Phvul.003G089200' => 'pvu', 'Phvul.007G126000' => 'pvu', 'Phvul.007G126100' => 'pvu', 'Phvul.007G178000' => 'pvu', 'Phvul.007G178200' => 'pvu', 'Potri.002G043000' => 'ptr', 'Potri.002G043200' => 'ptr', 'Potri.003G123750' => 'ptr', 'Potri.005G055401' => 'ptr', 'Potri.005G219700' => 'ptr', 'Potri.005G220000' => 'ptr', 'Potri.008G161901' => 'ptr', 'Potri.008G162000' => 'ptr', 'Potri.008G162400' => 'ptr', 'Potri.010G076900' => 'ptr', 'Pp3c12_9180' => 'ppa', 'Pp3c13_19770' => 'ppa', 'Pp3c14_22950' => 'ppa', 'Pp3c16_12160' => 'ppa', 'Pp3c27_7820' => 'ppa', 'Pp3c2_3490' => 'ppa', 'Pp3c3_23700' => 'ppa', 'Pp3c3_36520' => 'ppa', 'Pp3c4_15250' => 'ppa', 'PRCOL_00007002' => 'pco', 'Prupe.1G030600' => 'ppe', 'Prupe.1G030700' => 'ppe', 'Prupe.6G345200' => 'ppe', 'Prupe.8G230300' => 'ppe', 'Prupe.8G230500' => 'ppe', 'Psat3g059600' => 'psa', 'Psat5g200920' => 'psa', 'Psat6g056440' => 'psa', 'Psat6g057360' => 'psa', 'Psat6g134120' => 'psa', 'Psat6g134160' => 'psa', 'Psat7g008640' => 'psa', 'Psat7g185240' => 'psa', 'PSO017G1330' => 'pso', 'PSO063G6097' => 'pso', 'PSO170G0835' => 'pso', 'PSO170G2499' => 'pso', 'PSO210G5058' => 'pso', 'PSO210G6154' => 'pso', 'PSO585G0031' => 'pso', 'PSO832G0264' => 'pso', 'PSO832G4288' => 'pso', 'QL03p027355' => 'qlo', 'QL03p027430' => 'qlo', 'QL04p081380' => 'qlo', 'QL06p015642' => 'qlo', 'QL06p015650' => 'qlo', 'QL06p015686' => 'qlo', 'QL12p042927' => 'qlo', 'QL93p1863_0035' => 'qlo', 'RcHm_v2.0_Chr3g0450581' => 'rch', 'RcHm_v2.0_Chr4g0390371' => 'rch', 'RcHm_v2.0_Chr4g0390381' => 'rch', 'RcHm_v2.0_Chr4g0390491' => 'rch', 'RcHm_v2.0_Chr4g0390501' => 'rch', 'RcHm_v2.0_Chr6g0289231' => 'rch', 'Rhsim04G0190400' => 'rsi', 'Rhsim04G0190500' => 'rsi', 'Rhsim04G0190600' => 'rsi', 'Rhsim13G0031400' => 'rsi', 'Rhsim13G0165600' => 'rsi', 'RhsimUnG0114600' => 'rsi', 'RhsimUnG0114700' => 'rsi', 'Sabra02G0034800' => 'sbr', 'Sabra02G0035100' => 'sbr', 'Sabra05G0168600' => 'sbr', 'Sabra05G0168800' => 'sbr', 'Sabra08G0123700' => 'sbr', 'Sabra10G0031900' => 'sbr', 'Sabra13G0039000' => 'sbr', 'SalBow2G0782' => 'sbo', 'SalBow2G1403' => 'sbo', 'SalBow4G0074' => 'sbo', 'SalBow4G2635' => 'sbo', 'SalBow5G3010' => 'sbo', 'Sc05g0000870' => 'sci', 'Sc05g0000890' => 'sci', 'Sc13g0005000' => 'sci', 'Sc13g0005030' => 'sci', 'Sc19g0003790' => 'sci', 'Sc19g0003800' => 'sci', 'Sed0003467' => 'sed', 'Sed0009355' => 'sed', 'Sed0009894' => 'sed', 'Sed0011972' => 'sed', 'Sed0021483' => 'sed', 'Sed0021750' => 'sed', 'Sed0026279' => 'sed', 'SEGI_05312' => 'sgi', 'SEGI_10112' => 'sgi', 'SEGI_15835' => 'sgi', 'SEGI_30386' => 'sgi', 'SEGI_34122' => 'sgi', 'SEGI_35063' => 'sgi', 'SGA_v2.0_scaffold101G29794' => 'sas', 'SGA_v2.0_scaffold1G00573' => 'sas', 'SGA_v2.0_scaffold79G25637' => 'sas', 'SGA_v2.0_scaffold88G27283' => 'sas', 'SGA_v2.0_scaffold88G27285' => 'sas', 'SGA_v2.0_scaffold88G27331' => 'sas', 'SHI09937' => 'shi', 'SMO119G0302' => 'smo', 'SMO137G0231' => 'smo', 'SMO367G1151' => 'smo', 'Solyc02g082000.3' => 'sly', 'Solyc06g031670.3' => 'sly', 'Solyc06g053810.3' => 'sly', 'Solyc07g025457.1' => 'sly', 'Solyc08g059740.1' => 'sly', 'Solyc08g059750.3' => 'sly', 'Solyc09g083370.3' => 'sly', 'Solyc12g038950.3' => 'sly', 'Sopen02g026630' => 'spe', 'Sopen06g018930' => 'spe', 'Sopen06g018940' => 'spe', 'Sopen08g009460' => 'spe', 'Sopen09g032290' => 'spe', 'Sp1g03080' => 'spa', 'Sp1g03090' => 'spa', 'Sp1g05480' => 'spa', 'Sp2g07860' => 'spa', 'Sp2g08430' => 'spa', 'Sp2g08440' => 'spa', 'Sp2g26200' => 'spa', 'Sp4g13170' => 'spa', 'Sp6g33840' => 'spa', 'SpUn1204_0010' => 'spa', 'TAR365G0908' => 'tar', 'TAR381G1270' => 'tar', 'TAR381G1651' => 'tar', 'TAR625G1131' => 'tar', 'TAR633G0962' => 'tar', 'TAR633G1729' => 'tar', 'TAR633G1864' => 'tar', 'TAR636G0221' => 'tar', 'TAR636G0314' => 'tar', 'TAR636G3202' => 'tar', 'THA.LOC104800805' => 'tha', 'THA.LOC104801096' => 'tha', 'THA.LOC104801555' => 'tha', 'THA.LOC104808491' => 'tha', 'THA.LOC104808595' => 'tha', 'THA.LOC104815985' => 'tha', 'THA.LOC104822250' => 'tha', 'THA.LOC104826071' => 'tha', 'Thecc.01G265200' => 'tca', 'Thecc.01G265300' => 'tca', 'Thecc.01G265700' => 'tca', 'Thecc.03G109100' => 'tca', 'Thecc.04G245900' => 'tca', 'Thecc.04G246000' => 'tca', 'Thhalv10003334m.g' => 'esa', 'Thhalv10005508m.g' => 'esa', 'Thhalv10005643m.g' => 'esa', 'Thhalv10007316m.g' => 'esa', 'Thhalv10009006m.g' => 'esa', 'Thhalv10009309m.g' => 'esa', 'Thhalv10014917m.g' => 'esa', 'Thhalv10014919m.g' => 'esa', 'Thhalv10015393m.g' => 'esa', 'Thhalv10016515m.g' => 'esa', 'Thhalv10029242m.g' => 'esa', 'TPR.G16654' => 'tpr', 'TPR.G20589' => 'tpr', 'TPR.G23029' => 'tpr', 'TPR.G27731' => 'tpr', 'TPR.G28889' => 'tpr', 'TPR.G28899' => 'tpr', 'TPR.G30846' => 'tpr', 'TPR.G5452' => 'tpr', 'TPR.G5713' => 'tpr', 'TPR.G9046' => 'tpr', 'TPR.G9061' => 'tpr', 'TWI09G1075' => 'twi', 'TWI12G0806' => 'twi', 'TWI18G0108' => 'twi', 'TWI53G1361' => 'twi', 'TWI73G0185' => 'twi', 'TWI73G0427' => 'twi', 'unitig_37.g12001' => 'ugi', 'unitig_747.g21660' => 'ugi', 'unitig_748.g7232' => 'ugi', 'unitig_748.g7315' => 'ugi', 'unitig_85.g27262' => 'ugi', 'unitig_92.g28220' => 'ugi', 'vmacro02632' => 'vma', 'vmacro08410' => 'vma', 'vmacro08411' => 'vma', 'vmacro15407' => 'vma', 'VMungo0251G3619' => 'vmu', 'VMungo0720G1204' => 'vmu', 'VMungo0720G1918' => 'vmu', 'VMungo0720G2387' => 'vmu', 'VMungo0720G2961' => 'vmu', 'VMungo1215G2154' => 'vmu', 'VMungo1383G2411' => 'vmu', 'Zm00001eb051130' => 'zma', 'Zm00001eb116830' => 'zma', 'Zm00001eb116850' => 'zma', 'Zm00001eb151740' => 'zma', 'Zm00001eb292360' => 'zma', 'Zm00001eb301640' => 'zma' ) $gf_id = 'HOM05D000856' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000856' ) $data_identifier = 'HOM05D000856' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 13, 'ath' => (int) 10, 'atr' => (int) 1, 'acertr' => (int) 8, 'cqu' => (int) 6, 'bca' => (int) 21, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 11, 'car' => (int) 9, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 8, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 5, 'fan' => (int) 16, 'fve' => (int) 6, 'gma' => (int) 11, 'ghi' => (int) 19, 'gra' => (int) 9, 'vvi' => (int) 7, 'han' => (int) 17, 'cav' => (int) 5, 'hma' => (int) 2, 'vpl' => (int) 2, 'sun' => (int) 7, 'lal' => (int) 9, 'lja' => (int) 5, 'lonja' => (int) 9, 'lsa' => (int) 5, 'mes' => (int) 8, 'mpo' => (int) 3, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 10, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 15, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 9, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 9, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 6, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 5, 'spa' => (int) 10, 'tar' => (int) 10, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 11, 'tpr' => (int) 11, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 4, 'vmu' => (int) 7, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb301640' $species_info = array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ) $local_species = 'ccl' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000856', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p00010' => 'bna', 'A03p04160' => 'bna', 'A03p17160' => 'bna', 'A04p23370' => 'bna', 'A05p14860' => 'bna', 'A08p37020' => 'bna', 'A09p08050' => 'bna', 'A09p66800' => 'bna', 'A09p67940' => 'bna', 'A10p02680' => 'bna', 'A10p05320' => 'bna', 'Aa31LG1G20560' => 'aar', 'Aa31LG1G20610' => 'aar', 'Aa31LG1G7810' => 'aar', 'Aa31LG5G3590' => 'aar', 'Aa31LG5G6140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3819' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4683' => 'aag', 'Actinidia04480' => 'ach', 'Actinidia05466' => 'ach', 'Actinidia08445' => 'ach', 'Actinidia21170' => 'ach', 'Actinidia24812' => 'ach', 'Actinidia24951' => 'ach', 'Actinidia40088' => 'ach', 'Ah.02g111660' => 'amhyb', 'Ah.11g048900' => 'amhyb', 'Ah.11g049910' => 'amhyb', 'AL1G13870' => 'aly', 'AL1G13880' => 'aly', 'AL1G16760' => 'aly', 'AL390U10020' => 'aly', 'AL4G25520' => 'aly', 'AL6G19890' => 'aly', 'AL6G19900' => 'aly', 'AL6G19910' => 'aly', 'AL8G40100' => 'aly', 'Aqoxy2G03562' => 'aox', 'Aqoxy5G00316' => 'aox', 'Aqoxy5G00926' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1628KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1H403S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2FU6SJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.882I6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8YRY2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YN1SN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AF70II' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZA8L1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F916KL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHRD8H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KTZ8QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S22EMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8M29T' => 'arhy', 'AT1G04270' => 'ath', 'AT1G04280' => 'ath', 'AT1G06750' => 'ath', 'AT1G33850' => 'ath', 'AT2G30630' => 'ath', 'AT5G09490' => 'ath', 'AT5G09500' => 'ath', 'AT5G09510' => 'ath', 'AT5G43640' => 'ath', 'AT5G63070' => 'ath', 'ATR0605G315' => 'atr', 'Atru.chr11.175' => 'acertr', 'Atru.chr11.653' => 'acertr', 'Atru.chr3.1616' => 'acertr', 'Atru.chr4.2230' => 'acertr', 'Atru.chr4.2232' => 'acertr', 'Atru.chr5.1598' => 'acertr', 'Atru.chr5.1600' => 'acertr', 'Atru.chr5.2188' => 'acertr', 'AUR62008326' => 'cqu', 'AUR62011922' => 'cqu', 'AUR62011924' => 'cqu', 'AUR62021771' => 'cqu', 'AUR62032237' => 'cqu', 'AUR62032240' => 'cqu', 'BcaB01g05572' => 'bca', 'BcaB02g10337' => 'bca', 'BcaB04g19944' => 'bca', 'BcaB05g21548' => 'bca', 'BcaB05g21549' => 'bca', 'BcaB05g23227' => 'bca', 'BcaB06g26256' => 'bca', 'BcaB06g26257' => 'bca', 'BcaB06g28379' => 'bca', 'BcaC02g11159' => 'bca', 'BcaC03g13258' => 'bca', 'BcaC03g13259' => 'bca', 'BcaC05g24456' => 'bca', 'BcaC05g24457' => 'bca', 'BcaC07g36922' => 'bca', 'BcaC07g36923' => 'bca', 'BcaC07g42050' => 'bca', 'BcaC07g42176' => 'bca', 'BcaC07g42195' => 'bca', 'BcaC07g42196' => 'bca', 'BcaNung06674' => 'bca', 'BolC2t06351H' => 'bol', 'BolC2t06352H' => 'bol', 'BolC3t12993H' => 'bol', 'BolC4t23525H' => 'bol', 'BolC4t27475H' => 'bol', 'BolC5t29025H' => 'bol', 'BolC5t29026H' => 'bol', 'BolC8t46898H' => 'bol', 'BolC8t46899H' => 'bol', 'BolC8t52630H' => 'bol', 'BolC8t52765H' => 'bol', 'BolC9t53824H' => 'bol', 'BraA03t09760Z' => 'bra', 'BraA03t10990Z' => 'bra', 'BraA05t20413Z' => 'bra', 'BraA08t35602Z' => 'bra', 'BraA09t36458Z' => 'bra', 'BraA09t42018Z' => 'bra', 'BraA09t42129Z' => 'bra', 'BraA10t42536Z' => 'bra', 'BraA10t42537Z' => 'bra', 'C01p10690' => 'bna', 'C02p03890' => 'bna', 'C02p03900' => 'bna', 'C03p04620' => 'bna', 'C04p19870' => 'bna', 'C04p59670' => 'bna', 'C05p02460' => 'bna', 'C05p02470' => 'bna', 'C08p00980' => 'bna', 'C08p00990' => 'bna', 'C08p51030' => 'bna', 'C08p52360' => 'bna', 'C09p09120' => 'bna', 'CAN.G19.15' => 'can', 'CAN.G251.10' => 'can', 'CAN.G251.9' => 'can', 'CAN.G398.24' => 'can', 'CAN.G410.32' => 'can', 'CAN.G881.2' => 'can', 'CANSAT01G3025' => 'cansat', 'CANSAT78G1211' => 'cansat', 'CANSAT78G1218' => 'cansat', 'CANSAT78G1521' => 'cansat', 'CANSAT78G1670' => 'cansat', 'CARHR003600' => 'chi', 'CARHR003610' => 'chi', 'CARHR006290' => 'chi', 'CARHR006430' => 'chi', 'CARHR124110' => 'chi', 'CARHR203870' => 'chi', 'CARHR203880' => 'chi', 'CARHR203890' => 'chi', 'CARHR276880' => 'chi', 'Carub.0001s0346' => 'cru', 'Carub.0001s0347' => 'cru', 'Carub.0001s0607' => 'cru', 'Carub.0003s2768' => 'cru', 'Carub.0003s2769' => 'cru', 'Carub.0004s1178' => 'cru', 'Carub.0006s0806' => 'cru', 'Carub.0006s0807' => 'cru', 'Carub.0006s0808' => 'cru', 'Carub.0008s0501' => 'cru', 'Carub.0008s2379' => 'cru', 'Ca_08655_v3' => 'car', 'Ca_08922_v3' => 'car', 'Ca_08923_v3' => 'car', 'Ca_09119_v3' => 'car', 'Ca_09703_v3' => 'car', 'Ca_09705_v3' => 'car', 'Ca_09835_v3' => 'car', 'Ca_26403_v3' => 'car', 'Ca_30719_v3' => 'car', 'CBR_g17958' => 'cbr', 'CBR_g40516' => 'cbr', 'Cc00_g05350' => 'ccan', 'Cc01_g18690' => 'ccan', 'Cc03_g04830' => 'ccan', 'Cc03_g04850' => 'ccan', 'CDE02G4469' => 'cde', 'CDE06G0883' => 'cde', 'CDE06G1295' => 'cde', 'CDE06G1390' => 'cde', 'CDE07G0584' => 'cde', 'CDE07G1084' => 'cde', 'CDE08G1259' => 'cde', 'Cfa002341' => 'cfa', 'Cfa024337' => 'cfa', 'Ciclev10004749m.g' => 'ccl', 'Ciclev10006127m.g' => 'ccl', 'Ciclev10019720m.g' => 'ccl', 'Ciclev10022652m.g' => 'ccl', 'CiPaw.01G190400' => 'cil', 'CiPaw.01G190500' => 'cil', 'CiPaw.02G116400' => 'cil', 'CiPaw.02G116500' => 'cil', 'CiPaw.04G183000' => 'cil', 'CiPaw.04G183300' => 'cil', 'ClCG05G004610' => 'cla', 'ClCG05G004620' => 'cla', 'ClCG06G006730' => 'cla', 'ClCG06G006740' => 'cla', 'ClCG11G003690' => 'cla', 'COL.COLO4_08276' => 'col', 'COL.COLO4_08277' => 'col', 'COL.COLO4_15787' => 'col', 'COL.COLO4_15789' => 'col', 'Cpa.g.c44815' => 'cpa', 'Cpa.g.sc52.144' => 'cpa', 'Cpa.g.sc58.46' => 'cpa', 'Cpa.g.sc58.47' => 'cpa', 'Cre08.g360900' => 'cre', 'CsaV3_2G013030' => 'csa', 'CsaV3_2G013050' => 'csa', 'CsaV3_2G015620' => 'csa', 'CsaV3_3G012590' => 'csa', 'CsaV3_3G012600' => 'csa', 'CSS0001641' => 'camsi', 'CSS0008310' => 'camsi', 'CSS0013011' => 'camsi', 'CSS0017147' => 'camsi', 'CSS0022970' => 'camsi', 'CSS0025655' => 'camsi', 'CSS0028665' => 'camsi', 'CSS0029117' => 'camsi', 'CSS0032024' => 'camsi', 'CSS0039681' => 'camsi', 'CSS0046516' => 'camsi', 'CSS0050307' => 'camsi', 'DCAR_005871' => 'dca', 'DCAR_007342' => 'dca', 'DCAR_024228' => 'dca', 'DCAR_027277' => 'dca', 'DCAR_030718' => 'dca', 'Dinv20287' => 'din', 'Dinv22461' => 'din', 'Dinv22464' => 'din', 'Dinv29912' => 'din', 'Dinv29913' => 'din', 'Dinv34580' => 'din', 'Dinv34582' => 'din', 'Dinv44632' => 'din', 'Duzib052G0266' => 'dzi', 'Duzib133G0907' => 'dzi', 'Duzib133G1034' => 'dzi', 'Duzib138G0207' => 'dzi', 'Duzib138G0491' => 'dzi', 'Duzib151G0812' => 'dzi', 'Duzib151G1166' => 'dzi', 'Duzib168G0192' => 'dzi', 'Duzib211G0077' => 'dzi', 'Duzib212G0429' => 'dzi', 'Duzib212G0472' => 'dzi', 'ECA233G2617' => 'eca', 'ECA236G4188' => 'eca', 'ECA240G0936' => 'eca', 'ECA240G1129' => 'eca', 'ECA247G0623' => 'eca', 'EL10Ac5g10451' => 'bvu', 'EL10Ac5g10453' => 'bvu', 'EL10Ac5g10894' => 'bvu', 'Eucgr.H00192' => 'egr', 'Eucgr.H00193' => 'egr', 'Eucgr.H00194' => 'egr', 'Eucgr.J01562' => 'egr', 'Eucgr.K03301' => 'egr', 'FAN02G0632' => 'fan', 'FAN05G5378' => 'fan', 'FAN09G3247' => 'fan', 'FAN12G0435' => 'fan', 'FAN12G2426' => 'fan', 'FAN14G1707' => 'fan', 'FAN14G4725' => 'fan', 'FAN15G2071' => 'fan', 'FAN17G3065' => 'fan', 'FAN19G1376' => 'fan', 'FAN20G0354' => 'fan', 'FAN20G2429' => 'fan', 'FAN20G2658' => 'fan', 'FAN24G2343' => 'fan', 'FAN27G2362' => 'fan', 'FAN28G1765' => 'fan', 'FvH4_1g16020' => 'fve', 'FvH4_2g04890' => 'fve', 'FvH4_2g22270' => 'fve', 'FvH4_4g02630' => 'fve', 'FvH4_4g02640' => 'fve', 'FvH4_6g02650' => 'fve', 'Glyma.02G140600' => 'gma', 'Glyma.03G159900' => 'gma', 'Glyma.05G234800' => 'gma', 'Glyma.07G269600' => 'gma', 'Glyma.08G042300' => 'gma', 'Glyma.10G033500' => 'gma', 'Glyma.10G185200' => 'gma', 'Glyma.17G004300' => 'gma', 'Glyma.19G161900' => 'gma', 'Glyma.20G205100' => 'gma', 'Glyma.20G205200' => 'gma', 'Gohir.A01G139101' => 'ghi', 'Gohir.A02G035600' => 'ghi', 'Gohir.A02G117901' => 'ghi', 'Gohir.A07G210100' => 'ghi', 'Gohir.A07G210200' => 'ghi', 'Gohir.A08G061100' => 'ghi', 'Gohir.A09G223000' => 'ghi', 'Gohir.A09G223100' => 'ghi', 'Gohir.A10G113900' => 'ghi', 'Gohir.A10G114000' => 'ghi', 'Gohir.D02G042300' => 'ghi', 'Gohir.D07G216100' => 'ghi', 'Gohir.D07G216200' => 'ghi', 'Gohir.D08G070400' => 'ghi', 'Gohir.D09G225000' => 'ghi', 'Gohir.D09G225100' => 'ghi', 'Gohir.D10G152300' => 'ghi', 'Gohir.D10G153200' => 'ghi', 'Gohir.D11G133701' => 'ghi', 'Gorai.004G074100' => 'gra', 'Gorai.005G046800' => 'gra', 'Gorai.006G246500' => 'gra', 'Gorai.006G246600' => 'gra', 'Gorai.007G142900' => 'gra', 'Gorai.011G171000' => 'gra', 'Gorai.011G171100' => 'gra', 'Gorai.013G104300' => 'gra', 'Gorai.013G104400' => 'gra', 'GSVIVG01000754001' => 'vvi', 'GSVIVG01000756001' => 'vvi', 'GSVIVG01010903001' => 'vvi', 'GSVIVG01017623001' => 'vvi', 'GSVIVG01018113001' => 'vvi', 'GSVIVG01018116001' => 'vvi', 'GSVIVG01018118001' => 'vvi', 'HanXRQChr03g0076211' => 'han', 'HanXRQChr03g0092431' => 'han', 'HanXRQChr03g0092441' => 'han', 'HanXRQChr03g0092591' => 'han', 'HanXRQChr03g0092671' => 'han', 'HanXRQChr03g0092681' => 'han', 'HanXRQChr03g0092691' => 'han', 'HanXRQChr03g0092701' => 'han', 'HanXRQChr03g0092721' => 'han', 'HanXRQChr03g0092731' => 'han', 'HanXRQChr04g0113681' => 'han', 'HanXRQChr10g0281371' => 'han', 'HanXRQChr11g0337141' => 'han', 'HanXRQChr13g0424521' => 'han', 'HanXRQChr13g0424531' => 'han', 'HanXRQChr13g0424541' => 'han', 'HanXRQChr16g0498221' => 'han', 'Haze_04377' => 'cav', 'Haze_11298' => 'cav', 'Haze_24547' => 'cav', 'Haze_24550' => 'cav', 'Haze_26587' => 'cav', 'Hma1.2p1_0650F.1_g195410' => 'hma', 'Hma1.2p1_0893F.1_g233470' => 'hma', 'HPP92_006508' => 'vpl', 'HPP92_024780' => 'vpl', 'Hund02688' => 'sun', 'Hund09380' => 'sun', 'Hund09381' => 'sun', 'Hund09832' => 'sun', 'Hund09833' => 'sun', 'Hund11351' => 'sun', 'Hund11513' => 'sun', 'Lalb_Chr06g0162591' => 'lal', 'Lalb_Chr06g0162601' => 'lal', 'Lalb_Chr06g0169321' => 'lal', 'Lalb_Chr09g0330951' => 'lal', 'Lalb_Chr16g0387631' => 'lal', 'Lalb_Chr21g0306241' => 'lal', 'Lalb_Chr25g0290051' => 'lal', 'Lalb_Chr25g0290061' => 'lal', 'Lalb_Chr25g0290071' => 'lal', 'Lj1g0003876' => 'lja', 'Lj1P1207T36' => 'lonja', 'Lj2C1156G12' => 'lonja', 'Lj3A793G39' => 'lonja', 'Lj3C580G2' => 'lonja', 'Lj3C780G2' => 'lonja', 'Lj3C780T4' => 'lonja', 'Lj3C793G9' => 'lonja', 'Lj4g0012960' => 'lja', 'Lj5g0021252' => 'lja', 'Lj5g0021484' => 'lja', 'Lj5g0024528' => 'lja', 'Lj6A399T12' => 'lonja', 'Lj6A656G65' => 'lonja', 'Lsat_1_v5_gn_3_125500' => 'lsa', 'Lsat_1_v5_gn_3_125540' => 'lsa', 'Lsat_1_v5_gn_5_72701' => 'lsa', 'Lsat_1_v5_gn_8_91560' => 'lsa', 'Lsat_1_v5_gn_9_9640' => 'lsa', 'Manes.01G200600' => 'mes', 'Manes.01G200700' => 'mes', 'Manes.03G168900' => 'mes', 'Manes.03G169000' => 'mes', 'Manes.05G085801' => 'mes', 'Manes.05G086200' => 'mes', 'Manes.15G036700' => 'mes', 'Manes.15G036900' => 'mes', 'Mapoly0004s0172' => 'mpo', 'Mapoly0023s0001' => 'mpo', 'Mapoly0142s0012' => 'mpo', 'MBI01_g32854_MAGBIO' => 'mbi', 'MBI11_g24427_MAGBIO' => 'mbi', 'MBI11_g47319_MAGBIO' => 'mbi', 'MCO01G433' => 'mco', 'MD00G1187800' => 'mdo', 'MD04G1226500' => 'mdo', 'MD05G1203900' => 'mdo', 'MD10G1191100' => 'mdo', 'MD12G1243500' => 'mdo', 'MD13G1207000' => 'mdo', 'MD13G1207100' => 'mdo', 'MD16G1208600' => 'mdo', 'Medtr1g050352' => 'mtr', 'Medtr1g070385' => 'mtr', 'Medtr1g070450' => 'mtr', 'Medtr1g075200' => 'mtr', 'Medtr1g075250' => 'mtr', 'Medtr1g075260' => 'mtr', 'Medtr1g475250' => 'mtr', 'Medtr4g075450' => 'mtr', 'Medtr7g096300' => 'mtr', 'Medtr8g105110' => 'mtr', 'MELO3C006470.2' => 'cme', 'MELO3C006471.2' => 'cme', 'MELO3C020772.2' => 'cme', 'MELO3C026780.2' => 'cme', 'MELO3C026781.2' => 'cme', 'Migut.D00390' => 'egut', 'Migut.G00435' => 'egut', 'Migut.G00436' => 'egut', 'Migut.G00718' => 'egut', 'MSTRG.21891' => 'ama', 'MSTRG.26910' => 'ama', 'MSTRG.4099' => 'ama', 'MSTRG.9925' => 'ama', 'Nitab4.5_0000165g0010' => 'nta', 'Nitab4.5_0000209g0180' => 'nta', 'Nitab4.5_0000244g0440' => 'nta', 'Nitab4.5_0000525g0220' => 'nta', 'Nitab4.5_0001597g0020' => 'nta', 'Nitab4.5_0001878g0040' => 'nta', 'Nitab4.5_0001878g0060' => 'nta', 'Nitab4.5_0002838g0100' => 'nta', 'Nitab4.5_0002838g0120' => 'nta', 'Nitab4.5_0004798g0030' => 'nta', 'Nitab4.5_0005420g0010' => 'nta', 'Nitab4.5_0005507g0010' => 'nta', 'Nitab4.5_0005574g0020' => 'nta', 'Nitab4.5_0005838g0010' => 'nta', 'Nitab4.5_0010580g0020' => 'nta', 'Nn1g02599' => 'nnu', 'Nn1g02608' => 'nnu', 'Nn3g17742' => 'nnu', 'Nn3g19534' => 'nnu', 'Nn3g19535' => 'nnu', 'Oeu008790.1' => 'oeu', 'Oeu008792.1' => 'oeu', 'Oeu032590.1' => 'oeu', 'Oeu035349.1' => 'oeu', 'Oeu049791.1' => 'oeu', 'Os01g0774500' => 'osa', 'Os03g0628800' => 'osa', 'Os03g0798600' => 'osa', 'Os05g0508800' => 'osa', 'Peaxi162Scf00036g02018' => 'pax', 'Peaxi162Scf00578g00032' => 'pax', 'Peaxi162Scf00578g00317' => 'pax', 'Peaxi162Scf00785g00114' => 'pax', 'Peaxi162Scf00813g00119' => 'pax', 'Peaxi162Scf00906g00227' => 'pax', 'PGR004G0875' => 'pgr', 'PGR004G2424' => 'pgr', 'PGR031G1239' => 'pgr', 'PGR031G2474' => 'pgr', 'PGR044G0423' => 'pgr', 'PGSC0003DMG400001128' => 'stu', 'PGSC0003DMG400007336' => 'stu', 'PGSC0003DMG400016318' => 'stu', 'PGSC0003DMG400016319' => 'stu', 'PGSC0003DMG400018074' => 'stu', 'Phvul.001G157700' => 'pvu', 'Phvul.002G148550' => 'pvu', 'Phvul.002G320200' => 'pvu', 'Phvul.003G089200' => 'pvu', 'Phvul.007G126000' => 'pvu', 'Phvul.007G126100' => 'pvu', 'Phvul.007G178000' => 'pvu', 'Phvul.007G178200' => 'pvu', 'Potri.002G043000' => 'ptr', 'Potri.002G043200' => 'ptr', 'Potri.003G123750' => 'ptr', 'Potri.005G055401' => 'ptr', 'Potri.005G219700' => 'ptr', 'Potri.005G220000' => 'ptr', 'Potri.008G161901' => 'ptr', 'Potri.008G162000' => 'ptr', 'Potri.008G162400' => 'ptr', 'Potri.010G076900' => 'ptr', 'Pp3c12_9180' => 'ppa', 'Pp3c13_19770' => 'ppa', 'Pp3c14_22950' => 'ppa', 'Pp3c16_12160' => 'ppa', 'Pp3c27_7820' => 'ppa', 'Pp3c2_3490' => 'ppa', 'Pp3c3_23700' => 'ppa', 'Pp3c3_36520' => 'ppa', 'Pp3c4_15250' => 'ppa', 'PRCOL_00007002' => 'pco', 'Prupe.1G030600' => 'ppe', 'Prupe.1G030700' => 'ppe', 'Prupe.6G345200' => 'ppe', 'Prupe.8G230300' => 'ppe', 'Prupe.8G230500' => 'ppe', 'Psat3g059600' => 'psa', 'Psat5g200920' => 'psa', 'Psat6g056440' => 'psa', 'Psat6g057360' => 'psa', 'Psat6g134120' => 'psa', 'Psat6g134160' => 'psa', 'Psat7g008640' => 'psa', 'Psat7g185240' => 'psa', 'PSO017G1330' => 'pso', 'PSO063G6097' => 'pso', 'PSO170G0835' => 'pso', 'PSO170G2499' => 'pso', 'PSO210G5058' => 'pso', 'PSO210G6154' => 'pso', 'PSO585G0031' => 'pso', 'PSO832G0264' => 'pso', 'PSO832G4288' => 'pso', 'QL03p027355' => 'qlo', 'QL03p027430' => 'qlo', 'QL04p081380' => 'qlo', 'QL06p015642' => 'qlo', 'QL06p015650' => 'qlo', 'QL06p015686' => 'qlo', 'QL12p042927' => 'qlo', 'QL93p1863_0035' => 'qlo', 'RcHm_v2.0_Chr3g0450581' => 'rch', 'RcHm_v2.0_Chr4g0390371' => 'rch', 'RcHm_v2.0_Chr4g0390381' => 'rch', 'RcHm_v2.0_Chr4g0390491' => 'rch', 'RcHm_v2.0_Chr4g0390501' => 'rch', 'RcHm_v2.0_Chr6g0289231' => 'rch', 'Rhsim04G0190400' => 'rsi', 'Rhsim04G0190500' => 'rsi', 'Rhsim04G0190600' => 'rsi', 'Rhsim13G0031400' => 'rsi', 'Rhsim13G0165600' => 'rsi', 'RhsimUnG0114600' => 'rsi', 'RhsimUnG0114700' => 'rsi', 'Sabra02G0034800' => 'sbr', 'Sabra02G0035100' => 'sbr', 'Sabra05G0168600' => 'sbr', 'Sabra05G0168800' => 'sbr', 'Sabra08G0123700' => 'sbr', 'Sabra10G0031900' => 'sbr', 'Sabra13G0039000' => 'sbr', 'SalBow2G0782' => 'sbo', 'SalBow2G1403' => 'sbo', 'SalBow4G0074' => 'sbo', 'SalBow4G2635' => 'sbo', 'SalBow5G3010' => 'sbo', 'Sc05g0000870' => 'sci', 'Sc05g0000890' => 'sci', 'Sc13g0005000' => 'sci', 'Sc13g0005030' => 'sci', 'Sc19g0003790' => 'sci', 'Sc19g0003800' => 'sci', 'Sed0003467' => 'sed', 'Sed0009355' => 'sed', 'Sed0009894' => 'sed', 'Sed0011972' => 'sed', 'Sed0021483' => 'sed', 'Sed0021750' => 'sed', 'Sed0026279' => 'sed', 'SEGI_05312' => 'sgi', 'SEGI_10112' => 'sgi', 'SEGI_15835' => 'sgi', 'SEGI_30386' => 'sgi', 'SEGI_34122' => 'sgi', 'SEGI_35063' => 'sgi', 'SGA_v2.0_scaffold101G29794' => 'sas', 'SGA_v2.0_scaffold1G00573' => 'sas', 'SGA_v2.0_scaffold79G25637' => 'sas', 'SGA_v2.0_scaffold88G27283' => 'sas', 'SGA_v2.0_scaffold88G27285' => 'sas', 'SGA_v2.0_scaffold88G27331' => 'sas', 'SHI09937' => 'shi', 'SMO119G0302' => 'smo', 'SMO137G0231' => 'smo', 'SMO367G1151' => 'smo', 'Solyc02g082000.3' => 'sly', 'Solyc06g031670.3' => 'sly', 'Solyc06g053810.3' => 'sly', 'Solyc07g025457.1' => 'sly', 'Solyc08g059740.1' => 'sly', 'Solyc08g059750.3' => 'sly', 'Solyc09g083370.3' => 'sly', 'Solyc12g038950.3' => 'sly', 'Sopen02g026630' => 'spe', 'Sopen06g018930' => 'spe', 'Sopen06g018940' => 'spe', 'Sopen08g009460' => 'spe', 'Sopen09g032290' => 'spe', 'Sp1g03080' => 'spa', 'Sp1g03090' => 'spa', 'Sp1g05480' => 'spa', 'Sp2g07860' => 'spa', 'Sp2g08430' => 'spa', 'Sp2g08440' => 'spa', 'Sp2g26200' => 'spa', 'Sp4g13170' => 'spa', 'Sp6g33840' => 'spa', 'SpUn1204_0010' => 'spa', 'TAR365G0908' => 'tar', 'TAR381G1270' => 'tar', 'TAR381G1651' => 'tar', 'TAR625G1131' => 'tar', 'TAR633G0962' => 'tar', 'TAR633G1729' => 'tar', 'TAR633G1864' => 'tar', 'TAR636G0221' => 'tar', 'TAR636G0314' => 'tar', 'TAR636G3202' => 'tar', 'THA.LOC104800805' => 'tha', 'THA.LOC104801096' => 'tha', 'THA.LOC104801555' => 'tha', 'THA.LOC104808491' => 'tha', 'THA.LOC104808595' => 'tha', 'THA.LOC104815985' => 'tha', 'THA.LOC104822250' => 'tha', 'THA.LOC104826071' => 'tha', 'Thecc.01G265200' => 'tca', 'Thecc.01G265300' => 'tca', 'Thecc.01G265700' => 'tca', 'Thecc.03G109100' => 'tca', 'Thecc.04G245900' => 'tca', 'Thecc.04G246000' => 'tca', 'Thhalv10003334m.g' => 'esa', 'Thhalv10005508m.g' => 'esa', 'Thhalv10005643m.g' => 'esa', 'Thhalv10007316m.g' => 'esa', 'Thhalv10009006m.g' => 'esa', 'Thhalv10009309m.g' => 'esa', 'Thhalv10014917m.g' => 'esa', 'Thhalv10014919m.g' => 'esa', 'Thhalv10015393m.g' => 'esa', 'Thhalv10016515m.g' => 'esa', 'Thhalv10029242m.g' => 'esa', 'TPR.G16654' => 'tpr', 'TPR.G20589' => 'tpr', 'TPR.G23029' => 'tpr', 'TPR.G27731' => 'tpr', 'TPR.G28889' => 'tpr', 'TPR.G28899' => 'tpr', 'TPR.G30846' => 'tpr', 'TPR.G5452' => 'tpr', 'TPR.G5713' => 'tpr', 'TPR.G9046' => 'tpr', 'TPR.G9061' => 'tpr', 'TWI09G1075' => 'twi', 'TWI12G0806' => 'twi', 'TWI18G0108' => 'twi', 'TWI53G1361' => 'twi', 'TWI73G0185' => 'twi', 'TWI73G0427' => 'twi', 'unitig_37.g12001' => 'ugi', 'unitig_747.g21660' => 'ugi', 'unitig_748.g7232' => 'ugi', 'unitig_748.g7315' => 'ugi', 'unitig_85.g27262' => 'ugi', 'unitig_92.g28220' => 'ugi', 'vmacro02632' => 'vma', 'vmacro08410' => 'vma', 'vmacro08411' => 'vma', 'vmacro15407' => 'vma', 'VMungo0251G3619' => 'vmu', 'VMungo0720G1204' => 'vmu', 'VMungo0720G1918' => 'vmu', 'VMungo0720G2387' => 'vmu', 'VMungo0720G2961' => 'vmu', 'VMungo1215G2154' => 'vmu', 'VMungo1383G2411' => 'vmu', 'Zm00001eb051130' => 'zma', 'Zm00001eb116830' => 'zma', 'Zm00001eb116850' => 'zma', 'Zm00001eb151740' => 'zma', 'Zm00001eb292360' => 'zma', 'Zm00001eb301640' => 'zma' ), 'gf_id' => 'HOM05D000856', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000856' ), 'data_identifier' => 'HOM05D000856', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000856', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p00010' => 'bna', 'A03p04160' => 'bna', 'A03p17160' => 'bna', 'A04p23370' => 'bna', 'A05p14860' => 'bna', 'A08p37020' => 'bna', 'A09p08050' => 'bna', 'A09p66800' => 'bna', 'A09p67940' => 'bna', 'A10p02680' => 'bna', 'A10p05320' => 'bna', 'Aa31LG1G20560' => 'aar', 'Aa31LG1G20610' => 'aar', 'Aa31LG1G7810' => 'aar', 'Aa31LG5G3590' => 'aar', 'Aa31LG5G6140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3819' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4683' => 'aag', 'Actinidia04480' => 'ach', 'Actinidia05466' => 'ach', 'Actinidia08445' => 'ach', 'Actinidia21170' => 'ach', 'Actinidia24812' => 'ach', 'Actinidia24951' => 'ach', 'Actinidia40088' => 'ach', 'Ah.02g111660' => 'amhyb', 'Ah.11g048900' => 'amhyb', 'Ah.11g049910' => 'amhyb', 'AL1G13870' => 'aly', 'AL1G13880' => 'aly', 'AL1G16760' => 'aly', 'AL390U10020' => 'aly', 'AL4G25520' => 'aly', 'AL6G19890' => 'aly', 'AL6G19900' => 'aly', 'AL6G19910' => 'aly', 'AL8G40100' => 'aly', 'Aqoxy2G03562' => 'aox', 'Aqoxy5G00316' => 'aox', 'Aqoxy5G00926' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1628KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1H403S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2FU6SJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.882I6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8YRY2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YN1SN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AF70II' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZA8L1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F916KL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHRD8H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KTZ8QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S22EMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8M29T' => 'arhy', 'AT1G04270' => 'ath', 'AT1G04280' => 'ath', 'AT1G06750' => 'ath', 'AT1G33850' => 'ath', 'AT2G30630' => 'ath', 'AT5G09490' => 'ath', 'AT5G09500' => 'ath', 'AT5G09510' => 'ath', 'AT5G43640' => 'ath', 'AT5G63070' => 'ath', 'ATR0605G315' => 'atr', 'Atru.chr11.175' => 'acertr', 'Atru.chr11.653' => 'acertr', 'Atru.chr3.1616' => 'acertr', 'Atru.chr4.2230' => 'acertr', 'Atru.chr4.2232' => 'acertr', 'Atru.chr5.1598' => 'acertr', 'Atru.chr5.1600' => 'acertr', 'Atru.chr5.2188' => 'acertr', 'AUR62008326' => 'cqu', 'AUR62011922' => 'cqu', 'AUR62011924' => 'cqu', 'AUR62021771' => 'cqu', 'AUR62032237' => 'cqu', 'AUR62032240' => 'cqu', 'BcaB01g05572' => 'bca', 'BcaB02g10337' => 'bca', 'BcaB04g19944' => 'bca', 'BcaB05g21548' => 'bca', 'BcaB05g21549' => 'bca', 'BcaB05g23227' => 'bca', 'BcaB06g26256' => 'bca', 'BcaB06g26257' => 'bca', 'BcaB06g28379' => 'bca', 'BcaC02g11159' => 'bca', 'BcaC03g13258' => 'bca', 'BcaC03g13259' => 'bca', 'BcaC05g24456' => 'bca', 'BcaC05g24457' => 'bca', 'BcaC07g36922' => 'bca', 'BcaC07g36923' => 'bca', 'BcaC07g42050' => 'bca', 'BcaC07g42176' => 'bca', 'BcaC07g42195' => 'bca', 'BcaC07g42196' => 'bca', 'BcaNung06674' => 'bca', 'BolC2t06351H' => 'bol', 'BolC2t06352H' => 'bol', 'BolC3t12993H' => 'bol', 'BolC4t23525H' => 'bol', 'BolC4t27475H' => 'bol', 'BolC5t29025H' => 'bol', 'BolC5t29026H' => 'bol', 'BolC8t46898H' => 'bol', 'BolC8t46899H' => 'bol', 'BolC8t52630H' => 'bol', 'BolC8t52765H' => 'bol', 'BolC9t53824H' => 'bol', 'BraA03t09760Z' => 'bra', 'BraA03t10990Z' => 'bra', 'BraA05t20413Z' => 'bra', 'BraA08t35602Z' => 'bra', 'BraA09t36458Z' => 'bra', 'BraA09t42018Z' => 'bra', 'BraA09t42129Z' => 'bra', 'BraA10t42536Z' => 'bra', 'BraA10t42537Z' => 'bra', 'C01p10690' => 'bna', 'C02p03890' => 'bna', 'C02p03900' => 'bna', 'C03p04620' => 'bna', 'C04p19870' => 'bna', 'C04p59670' => 'bna', 'C05p02460' => 'bna', 'C05p02470' => 'bna', 'C08p00980' => 'bna', 'C08p00990' => 'bna', 'C08p51030' => 'bna', 'C08p52360' => 'bna', 'C09p09120' => 'bna', 'CAN.G19.15' => 'can', 'CAN.G251.10' => 'can', 'CAN.G251.9' => 'can', 'CAN.G398.24' => 'can', 'CAN.G410.32' => 'can', 'CAN.G881.2' => 'can', 'CANSAT01G3025' => 'cansat', 'CANSAT78G1211' => 'cansat', 'CANSAT78G1218' => 'cansat', 'CANSAT78G1521' => 'cansat', 'CANSAT78G1670' => 'cansat', 'CARHR003600' => 'chi', 'CARHR003610' => 'chi', 'CARHR006290' => 'chi', 'CARHR006430' => 'chi', 'CARHR124110' => 'chi', 'CARHR203870' => 'chi', 'CARHR203880' => 'chi', 'CARHR203890' => 'chi', 'CARHR276880' => 'chi', 'Carub.0001s0346' => 'cru', 'Carub.0001s0347' => 'cru', 'Carub.0001s0607' => 'cru', 'Carub.0003s2768' => 'cru', 'Carub.0003s2769' => 'cru', 'Carub.0004s1178' => 'cru', 'Carub.0006s0806' => 'cru', 'Carub.0006s0807' => 'cru', 'Carub.0006s0808' => 'cru', 'Carub.0008s0501' => 'cru', 'Carub.0008s2379' => 'cru', 'Ca_08655_v3' => 'car', 'Ca_08922_v3' => 'car', 'Ca_08923_v3' => 'car', 'Ca_09119_v3' => 'car', 'Ca_09703_v3' => 'car', 'Ca_09705_v3' => 'car', 'Ca_09835_v3' => 'car', 'Ca_26403_v3' => 'car', 'Ca_30719_v3' => 'car', 'CBR_g17958' => 'cbr', 'CBR_g40516' => 'cbr', 'Cc00_g05350' => 'ccan', 'Cc01_g18690' => 'ccan', 'Cc03_g04830' => 'ccan', 'Cc03_g04850' => 'ccan', 'CDE02G4469' => 'cde', 'CDE06G0883' => 'cde', 'CDE06G1295' => 'cde', 'CDE06G1390' => 'cde', 'CDE07G0584' => 'cde', 'CDE07G1084' => 'cde', 'CDE08G1259' => 'cde', 'Cfa002341' => 'cfa', 'Cfa024337' => 'cfa', 'Ciclev10004749m.g' => 'ccl', 'Ciclev10006127m.g' => 'ccl', 'Ciclev10019720m.g' => 'ccl', 'Ciclev10022652m.g' => 'ccl', 'CiPaw.01G190400' => 'cil', 'CiPaw.01G190500' => 'cil', 'CiPaw.02G116400' => 'cil', 'CiPaw.02G116500' => 'cil', 'CiPaw.04G183000' => 'cil', 'CiPaw.04G183300' => 'cil', 'ClCG05G004610' => 'cla', 'ClCG05G004620' => 'cla', 'ClCG06G006730' => 'cla', 'ClCG06G006740' => 'cla', 'ClCG11G003690' => 'cla', 'COL.COLO4_08276' => 'col', 'COL.COLO4_08277' => 'col', 'COL.COLO4_15787' => 'col', 'COL.COLO4_15789' => 'col', 'Cpa.g.c44815' => 'cpa', 'Cpa.g.sc52.144' => 'cpa', 'Cpa.g.sc58.46' => 'cpa', 'Cpa.g.sc58.47' => 'cpa', 'Cre08.g360900' => 'cre', 'CsaV3_2G013030' => 'csa', 'CsaV3_2G013050' => 'csa', 'CsaV3_2G015620' => 'csa', 'CsaV3_3G012590' => 'csa', 'CsaV3_3G012600' => 'csa', 'CSS0001641' => 'camsi', 'CSS0008310' => 'camsi', 'CSS0013011' => 'camsi', 'CSS0017147' => 'camsi', 'CSS0022970' => 'camsi', 'CSS0025655' => 'camsi', 'CSS0028665' => 'camsi', 'CSS0029117' => 'camsi', 'CSS0032024' => 'camsi', 'CSS0039681' => 'camsi', 'CSS0046516' => 'camsi', 'CSS0050307' => 'camsi', 'DCAR_005871' => 'dca', 'DCAR_007342' => 'dca', 'DCAR_024228' => 'dca', 'DCAR_027277' => 'dca', 'DCAR_030718' => 'dca', 'Dinv20287' => 'din', 'Dinv22461' => 'din', 'Dinv22464' => 'din', 'Dinv29912' => 'din', 'Dinv29913' => 'din', 'Dinv34580' => 'din', 'Dinv34582' => 'din', 'Dinv44632' => 'din', 'Duzib052G0266' => 'dzi', 'Duzib133G0907' => 'dzi', 'Duzib133G1034' => 'dzi', 'Duzib138G0207' => 'dzi', 'Duzib138G0491' => 'dzi', 'Duzib151G0812' => 'dzi', 'Duzib151G1166' => 'dzi', 'Duzib168G0192' => 'dzi', 'Duzib211G0077' => 'dzi', 'Duzib212G0429' => 'dzi', 'Duzib212G0472' => 'dzi', 'ECA233G2617' => 'eca', 'ECA236G4188' => 'eca', 'ECA240G0936' => 'eca', 'ECA240G1129' => 'eca', 'ECA247G0623' => 'eca', 'EL10Ac5g10451' => 'bvu', 'EL10Ac5g10453' => 'bvu', 'EL10Ac5g10894' => 'bvu', 'Eucgr.H00192' => 'egr', 'Eucgr.H00193' => 'egr', 'Eucgr.H00194' => 'egr', 'Eucgr.J01562' => 'egr', 'Eucgr.K03301' => 'egr', 'FAN02G0632' => 'fan', 'FAN05G5378' => 'fan', 'FAN09G3247' => 'fan', 'FAN12G0435' => 'fan', 'FAN12G2426' => 'fan', 'FAN14G1707' => 'fan', 'FAN14G4725' => 'fan', 'FAN15G2071' => 'fan', 'FAN17G3065' => 'fan', 'FAN19G1376' => 'fan', 'FAN20G0354' => 'fan', 'FAN20G2429' => 'fan', 'FAN20G2658' => 'fan', 'FAN24G2343' => 'fan', 'FAN27G2362' => 'fan', 'FAN28G1765' => 'fan', 'FvH4_1g16020' => 'fve', 'FvH4_2g04890' => 'fve', 'FvH4_2g22270' => 'fve', 'FvH4_4g02630' => 'fve', 'FvH4_4g02640' => 'fve', 'FvH4_6g02650' => 'fve', 'Glyma.02G140600' => 'gma', 'Glyma.03G159900' => 'gma', 'Glyma.05G234800' => 'gma', 'Glyma.07G269600' => 'gma', 'Glyma.08G042300' => 'gma', 'Glyma.10G033500' => 'gma', 'Glyma.10G185200' => 'gma', 'Glyma.17G004300' => 'gma', 'Glyma.19G161900' => 'gma', 'Glyma.20G205100' => 'gma', 'Glyma.20G205200' => 'gma', 'Gohir.A01G139101' => 'ghi', 'Gohir.A02G035600' => 'ghi', 'Gohir.A02G117901' => 'ghi', 'Gohir.A07G210100' => 'ghi', 'Gohir.A07G210200' => 'ghi', 'Gohir.A08G061100' => 'ghi', 'Gohir.A09G223000' => 'ghi', 'Gohir.A09G223100' => 'ghi', 'Gohir.A10G113900' => 'ghi', 'Gohir.A10G114000' => 'ghi', 'Gohir.D02G042300' => 'ghi', 'Gohir.D07G216100' => 'ghi', 'Gohir.D07G216200' => 'ghi', 'Gohir.D08G070400' => 'ghi', 'Gohir.D09G225000' => 'ghi', 'Gohir.D09G225100' => 'ghi', 'Gohir.D10G152300' => 'ghi', 'Gohir.D10G153200' => 'ghi', 'Gohir.D11G133701' => 'ghi', 'Gorai.004G074100' => 'gra', 'Gorai.005G046800' => 'gra', 'Gorai.006G246500' => 'gra', 'Gorai.006G246600' => 'gra', 'Gorai.007G142900' => 'gra', 'Gorai.011G171000' => 'gra', 'Gorai.011G171100' => 'gra', 'Gorai.013G104300' => 'gra', 'Gorai.013G104400' => 'gra', 'GSVIVG01000754001' => 'vvi', 'GSVIVG01000756001' => 'vvi', 'GSVIVG01010903001' => 'vvi', 'GSVIVG01017623001' => 'vvi', 'GSVIVG01018113001' => 'vvi', 'GSVIVG01018116001' => 'vvi', 'GSVIVG01018118001' => 'vvi', 'HanXRQChr03g0076211' => 'han', 'HanXRQChr03g0092431' => 'han', 'HanXRQChr03g0092441' => 'han', 'HanXRQChr03g0092591' => 'han', 'HanXRQChr03g0092671' => 'han', 'HanXRQChr03g0092681' => 'han', 'HanXRQChr03g0092691' => 'han', 'HanXRQChr03g0092701' => 'han', 'HanXRQChr03g0092721' => 'han', 'HanXRQChr03g0092731' => 'han', 'HanXRQChr04g0113681' => 'han', 'HanXRQChr10g0281371' => 'han', 'HanXRQChr11g0337141' => 'han', 'HanXRQChr13g0424521' => 'han', 'HanXRQChr13g0424531' => 'han', 'HanXRQChr13g0424541' => 'han', 'HanXRQChr16g0498221' => 'han', 'Haze_04377' => 'cav', 'Haze_11298' => 'cav', 'Haze_24547' => 'cav', 'Haze_24550' => 'cav', 'Haze_26587' => 'cav', 'Hma1.2p1_0650F.1_g195410' => 'hma', 'Hma1.2p1_0893F.1_g233470' => 'hma', 'HPP92_006508' => 'vpl', 'HPP92_024780' => 'vpl', 'Hund02688' => 'sun', 'Hund09380' => 'sun', 'Hund09381' => 'sun', 'Hund09832' => 'sun', 'Hund09833' => 'sun', 'Hund11351' => 'sun', 'Hund11513' => 'sun', 'Lalb_Chr06g0162591' => 'lal', 'Lalb_Chr06g0162601' => 'lal', 'Lalb_Chr06g0169321' => 'lal', 'Lalb_Chr09g0330951' => 'lal', 'Lalb_Chr16g0387631' => 'lal', 'Lalb_Chr21g0306241' => 'lal', 'Lalb_Chr25g0290051' => 'lal', 'Lalb_Chr25g0290061' => 'lal', 'Lalb_Chr25g0290071' => 'lal', 'Lj1g0003876' => 'lja', 'Lj1P1207T36' => 'lonja', 'Lj2C1156G12' => 'lonja', 'Lj3A793G39' => 'lonja', 'Lj3C580G2' => 'lonja', 'Lj3C780G2' => 'lonja', 'Lj3C780T4' => 'lonja', 'Lj3C793G9' => 'lonja', 'Lj4g0012960' => 'lja', 'Lj5g0021252' => 'lja', 'Lj5g0021484' => 'lja', 'Lj5g0024528' => 'lja', 'Lj6A399T12' => 'lonja', 'Lj6A656G65' => 'lonja', 'Lsat_1_v5_gn_3_125500' => 'lsa', 'Lsat_1_v5_gn_3_125540' => 'lsa', 'Lsat_1_v5_gn_5_72701' => 'lsa', 'Lsat_1_v5_gn_8_91560' => 'lsa', 'Lsat_1_v5_gn_9_9640' => 'lsa', 'Manes.01G200600' => 'mes', 'Manes.01G200700' => 'mes', 'Manes.03G168900' => 'mes', 'Manes.03G169000' => 'mes', 'Manes.05G085801' => 'mes', 'Manes.05G086200' => 'mes', 'Manes.15G036700' => 'mes', 'Manes.15G036900' => 'mes', 'Mapoly0004s0172' => 'mpo', 'Mapoly0023s0001' => 'mpo', 'Mapoly0142s0012' => 'mpo', 'MBI01_g32854_MAGBIO' => 'mbi', 'MBI11_g24427_MAGBIO' => 'mbi', 'MBI11_g47319_MAGBIO' => 'mbi', 'MCO01G433' => 'mco', 'MD00G1187800' => 'mdo', 'MD04G1226500' => 'mdo', 'MD05G1203900' => 'mdo', 'MD10G1191100' => 'mdo', 'MD12G1243500' => 'mdo', 'MD13G1207000' => 'mdo', 'MD13G1207100' => 'mdo', 'MD16G1208600' => 'mdo', 'Medtr1g050352' => 'mtr', 'Medtr1g070385' => 'mtr', 'Medtr1g070450' => 'mtr', 'Medtr1g075200' => 'mtr', 'Medtr1g075250' => 'mtr', 'Medtr1g075260' => 'mtr', 'Medtr1g475250' => 'mtr', 'Medtr4g075450' => 'mtr', 'Medtr7g096300' => 'mtr', 'Medtr8g105110' => 'mtr', 'MELO3C006470.2' => 'cme', 'MELO3C006471.2' => 'cme', 'MELO3C020772.2' => 'cme', 'MELO3C026780.2' => 'cme', 'MELO3C026781.2' => 'cme', 'Migut.D00390' => 'egut', 'Migut.G00435' => 'egut', 'Migut.G00436' => 'egut', 'Migut.G00718' => 'egut', 'MSTRG.21891' => 'ama', 'MSTRG.26910' => 'ama', 'MSTRG.4099' => 'ama', 'MSTRG.9925' => 'ama', 'Nitab4.5_0000165g0010' => 'nta', 'Nitab4.5_0000209g0180' => 'nta', 'Nitab4.5_0000244g0440' => 'nta', 'Nitab4.5_0000525g0220' => 'nta', 'Nitab4.5_0001597g0020' => 'nta', 'Nitab4.5_0001878g0040' => 'nta', 'Nitab4.5_0001878g0060' => 'nta', 'Nitab4.5_0002838g0100' => 'nta', 'Nitab4.5_0002838g0120' => 'nta', 'Nitab4.5_0004798g0030' => 'nta', 'Nitab4.5_0005420g0010' => 'nta', 'Nitab4.5_0005507g0010' => 'nta', 'Nitab4.5_0005574g0020' => 'nta', 'Nitab4.5_0005838g0010' => 'nta', 'Nitab4.5_0010580g0020' => 'nta', 'Nn1g02599' => 'nnu', 'Nn1g02608' => 'nnu', 'Nn3g17742' => 'nnu', 'Nn3g19534' => 'nnu', 'Nn3g19535' => 'nnu', 'Oeu008790.1' => 'oeu', 'Oeu008792.1' => 'oeu', 'Oeu032590.1' => 'oeu', 'Oeu035349.1' => 'oeu', 'Oeu049791.1' => 'oeu', 'Os01g0774500' => 'osa', 'Os03g0628800' => 'osa', 'Os03g0798600' => 'osa', 'Os05g0508800' => 'osa', 'Peaxi162Scf00036g02018' => 'pax', 'Peaxi162Scf00578g00032' => 'pax', 'Peaxi162Scf00578g00317' => 'pax', 'Peaxi162Scf00785g00114' => 'pax', 'Peaxi162Scf00813g00119' => 'pax', 'Peaxi162Scf00906g00227' => 'pax', 'PGR004G0875' => 'pgr', 'PGR004G2424' => 'pgr', 'PGR031G1239' => 'pgr', 'PGR031G2474' => 'pgr', 'PGR044G0423' => 'pgr', 'PGSC0003DMG400001128' => 'stu', 'PGSC0003DMG400007336' => 'stu', 'PGSC0003DMG400016318' => 'stu', 'PGSC0003DMG400016319' => 'stu', 'PGSC0003DMG400018074' => 'stu', 'Phvul.001G157700' => 'pvu', 'Phvul.002G148550' => 'pvu', 'Phvul.002G320200' => 'pvu', 'Phvul.003G089200' => 'pvu', 'Phvul.007G126000' => 'pvu', 'Phvul.007G126100' => 'pvu', 'Phvul.007G178000' => 'pvu', 'Phvul.007G178200' => 'pvu', 'Potri.002G043000' => 'ptr', 'Potri.002G043200' => 'ptr', 'Potri.003G123750' => 'ptr', 'Potri.005G055401' => 'ptr', 'Potri.005G219700' => 'ptr', 'Potri.005G220000' => 'ptr', 'Potri.008G161901' => 'ptr', 'Potri.008G162000' => 'ptr', 'Potri.008G162400' => 'ptr', 'Potri.010G076900' => 'ptr', 'Pp3c12_9180' => 'ppa', 'Pp3c13_19770' => 'ppa', 'Pp3c14_22950' => 'ppa', 'Pp3c16_12160' => 'ppa', 'Pp3c27_7820' => 'ppa', 'Pp3c2_3490' => 'ppa', 'Pp3c3_23700' => 'ppa', 'Pp3c3_36520' => 'ppa', 'Pp3c4_15250' => 'ppa', 'PRCOL_00007002' => 'pco', 'Prupe.1G030600' => 'ppe', 'Prupe.1G030700' => 'ppe', 'Prupe.6G345200' => 'ppe', 'Prupe.8G230300' => 'ppe', 'Prupe.8G230500' => 'ppe', 'Psat3g059600' => 'psa', 'Psat5g200920' => 'psa', 'Psat6g056440' => 'psa', 'Psat6g057360' => 'psa', 'Psat6g134120' => 'psa', 'Psat6g134160' => 'psa', 'Psat7g008640' => 'psa', 'Psat7g185240' => 'psa', 'PSO017G1330' => 'pso', 'PSO063G6097' => 'pso', 'PSO170G0835' => 'pso', 'PSO170G2499' => 'pso', 'PSO210G5058' => 'pso', 'PSO210G6154' => 'pso', 'PSO585G0031' => 'pso', 'PSO832G0264' => 'pso', 'PSO832G4288' => 'pso', 'QL03p027355' => 'qlo', 'QL03p027430' => 'qlo', 'QL04p081380' => 'qlo', 'QL06p015642' => 'qlo', 'QL06p015650' => 'qlo', 'QL06p015686' => 'qlo', 'QL12p042927' => 'qlo', 'QL93p1863_0035' => 'qlo', 'RcHm_v2.0_Chr3g0450581' => 'rch', 'RcHm_v2.0_Chr4g0390371' => 'rch', 'RcHm_v2.0_Chr4g0390381' => 'rch', 'RcHm_v2.0_Chr4g0390491' => 'rch', 'RcHm_v2.0_Chr4g0390501' => 'rch', 'RcHm_v2.0_Chr6g0289231' => 'rch', 'Rhsim04G0190400' => 'rsi', 'Rhsim04G0190500' => 'rsi', 'Rhsim04G0190600' => 'rsi', 'Rhsim13G0031400' => 'rsi', 'Rhsim13G0165600' => 'rsi', 'RhsimUnG0114600' => 'rsi', 'RhsimUnG0114700' => 'rsi', 'Sabra02G0034800' => 'sbr', 'Sabra02G0035100' => 'sbr', 'Sabra05G0168600' => 'sbr', 'Sabra05G0168800' => 'sbr', 'Sabra08G0123700' => 'sbr', 'Sabra10G0031900' => 'sbr', 'Sabra13G0039000' => 'sbr', 'SalBow2G0782' => 'sbo', 'SalBow2G1403' => 'sbo', 'SalBow4G0074' => 'sbo', 'SalBow4G2635' => 'sbo', 'SalBow5G3010' => 'sbo', 'Sc05g0000870' => 'sci', 'Sc05g0000890' => 'sci', 'Sc13g0005000' => 'sci', 'Sc13g0005030' => 'sci', 'Sc19g0003790' => 'sci', 'Sc19g0003800' => 'sci', 'Sed0003467' => 'sed', 'Sed0009355' => 'sed', 'Sed0009894' => 'sed', 'Sed0011972' => 'sed', 'Sed0021483' => 'sed', 'Sed0021750' => 'sed', 'Sed0026279' => 'sed', 'SEGI_05312' => 'sgi', 'SEGI_10112' => 'sgi', 'SEGI_15835' => 'sgi', 'SEGI_30386' => 'sgi', 'SEGI_34122' => 'sgi', 'SEGI_35063' => 'sgi', 'SGA_v2.0_scaffold101G29794' => 'sas', 'SGA_v2.0_scaffold1G00573' => 'sas', 'SGA_v2.0_scaffold79G25637' => 'sas', 'SGA_v2.0_scaffold88G27283' => 'sas', 'SGA_v2.0_scaffold88G27285' => 'sas', 'SGA_v2.0_scaffold88G27331' => 'sas', 'SHI09937' => 'shi', 'SMO119G0302' => 'smo', 'SMO137G0231' => 'smo', 'SMO367G1151' => 'smo', 'Solyc02g082000.3' => 'sly', 'Solyc06g031670.3' => 'sly', 'Solyc06g053810.3' => 'sly', 'Solyc07g025457.1' => 'sly', 'Solyc08g059740.1' => 'sly', 'Solyc08g059750.3' => 'sly', 'Solyc09g083370.3' => 'sly', 'Solyc12g038950.3' => 'sly', 'Sopen02g026630' => 'spe', 'Sopen06g018930' => 'spe', 'Sopen06g018940' => 'spe', 'Sopen08g009460' => 'spe', 'Sopen09g032290' => 'spe', 'Sp1g03080' => 'spa', 'Sp1g03090' => 'spa', 'Sp1g05480' => 'spa', 'Sp2g07860' => 'spa', 'Sp2g08430' => 'spa', 'Sp2g08440' => 'spa', 'Sp2g26200' => 'spa', 'Sp4g13170' => 'spa', 'Sp6g33840' => 'spa', 'SpUn1204_0010' => 'spa', 'TAR365G0908' => 'tar', 'TAR381G1270' => 'tar', 'TAR381G1651' => 'tar', 'TAR625G1131' => 'tar', 'TAR633G0962' => 'tar', 'TAR633G1729' => 'tar', 'TAR633G1864' => 'tar', 'TAR636G0221' => 'tar', 'TAR636G0314' => 'tar', 'TAR636G3202' => 'tar', 'THA.LOC104800805' => 'tha', 'THA.LOC104801096' => 'tha', 'THA.LOC104801555' => 'tha', 'THA.LOC104808491' => 'tha', 'THA.LOC104808595' => 'tha', 'THA.LOC104815985' => 'tha', 'THA.LOC104822250' => 'tha', 'THA.LOC104826071' => 'tha', 'Thecc.01G265200' => 'tca', 'Thecc.01G265300' => 'tca', 'Thecc.01G265700' => 'tca', 'Thecc.03G109100' => 'tca', 'Thecc.04G245900' => 'tca', 'Thecc.04G246000' => 'tca', 'Thhalv10003334m.g' => 'esa', 'Thhalv10005508m.g' => 'esa', 'Thhalv10005643m.g' => 'esa', 'Thhalv10007316m.g' => 'esa', 'Thhalv10009006m.g' => 'esa', 'Thhalv10009309m.g' => 'esa', 'Thhalv10014917m.g' => 'esa', 'Thhalv10014919m.g' => 'esa', 'Thhalv10015393m.g' => 'esa', 'Thhalv10016515m.g' => 'esa', 'Thhalv10029242m.g' => 'esa', 'TPR.G16654' => 'tpr', 'TPR.G20589' => 'tpr', 'TPR.G23029' => 'tpr', 'TPR.G27731' => 'tpr', 'TPR.G28889' => 'tpr', 'TPR.G28899' => 'tpr', 'TPR.G30846' => 'tpr', 'TPR.G5452' => 'tpr', 'TPR.G5713' => 'tpr', 'TPR.G9046' => 'tpr', 'TPR.G9061' => 'tpr', 'TWI09G1075' => 'twi', 'TWI12G0806' => 'twi', 'TWI18G0108' => 'twi', 'TWI53G1361' => 'twi', 'TWI73G0185' => 'twi', 'TWI73G0427' => 'twi', 'unitig_37.g12001' => 'ugi', 'unitig_747.g21660' => 'ugi', 'unitig_748.g7232' => 'ugi', 'unitig_748.g7315' => 'ugi', 'unitig_85.g27262' => 'ugi', 'unitig_92.g28220' => 'ugi', 'vmacro02632' => 'vma', 'vmacro08410' => 'vma', 'vmacro08411' => 'vma', 'vmacro15407' => 'vma', 'VMungo0251G3619' => 'vmu', 'VMungo0720G1204' => 'vmu', 'VMungo0720G1918' => 'vmu', 'VMungo0720G2387' => 'vmu', 'VMungo0720G2961' => 'vmu', 'VMungo1215G2154' => 'vmu', 'VMungo1383G2411' => 'vmu', 'Zm00001eb051130' => 'zma', 'Zm00001eb116830' => 'zma', 'Zm00001eb116850' => 'zma', 'Zm00001eb151740' => 'zma', 'Zm00001eb292360' => 'zma', 'Zm00001eb301640' => 'zma' ) $gf_id = 'HOM05D000856' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000856' ) $data_identifier = 'HOM05D000856' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 13, 'ath' => (int) 10, 'atr' => (int) 1, 'acertr' => (int) 8, 'cqu' => (int) 6, 'bca' => (int) 21, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 11, 'car' => (int) 9, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 8, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 5, 'fan' => (int) 16, 'fve' => (int) 6, 'gma' => (int) 11, 'ghi' => (int) 19, 'gra' => (int) 9, 'vvi' => (int) 7, 'han' => (int) 17, 'cav' => (int) 5, 'hma' => (int) 2, 'vpl' => (int) 2, 'sun' => (int) 7, 'lal' => (int) 9, 'lja' => (int) 5, 'lonja' => (int) 9, 'lsa' => (int) 5, 'mes' => (int) 8, 'mpo' => (int) 3, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 10, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 15, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 9, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 9, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 6, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 5, 'spa' => (int) 10, 'tar' => (int) 10, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 11, 'tpr' => (int) 11, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 4, 'vmu' => (int) 7, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb301640' $species_info = array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ) $local_species = 'ccan' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000856', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p00010' => 'bna', 'A03p04160' => 'bna', 'A03p17160' => 'bna', 'A04p23370' => 'bna', 'A05p14860' => 'bna', 'A08p37020' => 'bna', 'A09p08050' => 'bna', 'A09p66800' => 'bna', 'A09p67940' => 'bna', 'A10p02680' => 'bna', 'A10p05320' => 'bna', 'Aa31LG1G20560' => 'aar', 'Aa31LG1G20610' => 'aar', 'Aa31LG1G7810' => 'aar', 'Aa31LG5G3590' => 'aar', 'Aa31LG5G6140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3819' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4683' => 'aag', 'Actinidia04480' => 'ach', 'Actinidia05466' => 'ach', 'Actinidia08445' => 'ach', 'Actinidia21170' => 'ach', 'Actinidia24812' => 'ach', 'Actinidia24951' => 'ach', 'Actinidia40088' => 'ach', 'Ah.02g111660' => 'amhyb', 'Ah.11g048900' => 'amhyb', 'Ah.11g049910' => 'amhyb', 'AL1G13870' => 'aly', 'AL1G13880' => 'aly', 'AL1G16760' => 'aly', 'AL390U10020' => 'aly', 'AL4G25520' => 'aly', 'AL6G19890' => 'aly', 'AL6G19900' => 'aly', 'AL6G19910' => 'aly', 'AL8G40100' => 'aly', 'Aqoxy2G03562' => 'aox', 'Aqoxy5G00316' => 'aox', 'Aqoxy5G00926' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1628KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1H403S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2FU6SJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.882I6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8YRY2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YN1SN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AF70II' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZA8L1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F916KL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHRD8H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KTZ8QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S22EMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8M29T' => 'arhy', 'AT1G04270' => 'ath', 'AT1G04280' => 'ath', 'AT1G06750' => 'ath', 'AT1G33850' => 'ath', 'AT2G30630' => 'ath', 'AT5G09490' => 'ath', 'AT5G09500' => 'ath', 'AT5G09510' => 'ath', 'AT5G43640' => 'ath', 'AT5G63070' => 'ath', 'ATR0605G315' => 'atr', 'Atru.chr11.175' => 'acertr', 'Atru.chr11.653' => 'acertr', 'Atru.chr3.1616' => 'acertr', 'Atru.chr4.2230' => 'acertr', 'Atru.chr4.2232' => 'acertr', 'Atru.chr5.1598' => 'acertr', 'Atru.chr5.1600' => 'acertr', 'Atru.chr5.2188' => 'acertr', 'AUR62008326' => 'cqu', 'AUR62011922' => 'cqu', 'AUR62011924' => 'cqu', 'AUR62021771' => 'cqu', 'AUR62032237' => 'cqu', 'AUR62032240' => 'cqu', 'BcaB01g05572' => 'bca', 'BcaB02g10337' => 'bca', 'BcaB04g19944' => 'bca', 'BcaB05g21548' => 'bca', 'BcaB05g21549' => 'bca', 'BcaB05g23227' => 'bca', 'BcaB06g26256' => 'bca', 'BcaB06g26257' => 'bca', 'BcaB06g28379' => 'bca', 'BcaC02g11159' => 'bca', 'BcaC03g13258' => 'bca', 'BcaC03g13259' => 'bca', 'BcaC05g24456' => 'bca', 'BcaC05g24457' => 'bca', 'BcaC07g36922' => 'bca', 'BcaC07g36923' => 'bca', 'BcaC07g42050' => 'bca', 'BcaC07g42176' => 'bca', 'BcaC07g42195' => 'bca', 'BcaC07g42196' => 'bca', 'BcaNung06674' => 'bca', 'BolC2t06351H' => 'bol', 'BolC2t06352H' => 'bol', 'BolC3t12993H' => 'bol', 'BolC4t23525H' => 'bol', 'BolC4t27475H' => 'bol', 'BolC5t29025H' => 'bol', 'BolC5t29026H' => 'bol', 'BolC8t46898H' => 'bol', 'BolC8t46899H' => 'bol', 'BolC8t52630H' => 'bol', 'BolC8t52765H' => 'bol', 'BolC9t53824H' => 'bol', 'BraA03t09760Z' => 'bra', 'BraA03t10990Z' => 'bra', 'BraA05t20413Z' => 'bra', 'BraA08t35602Z' => 'bra', 'BraA09t36458Z' => 'bra', 'BraA09t42018Z' => 'bra', 'BraA09t42129Z' => 'bra', 'BraA10t42536Z' => 'bra', 'BraA10t42537Z' => 'bra', 'C01p10690' => 'bna', 'C02p03890' => 'bna', 'C02p03900' => 'bna', 'C03p04620' => 'bna', 'C04p19870' => 'bna', 'C04p59670' => 'bna', 'C05p02460' => 'bna', 'C05p02470' => 'bna', 'C08p00980' => 'bna', 'C08p00990' => 'bna', 'C08p51030' => 'bna', 'C08p52360' => 'bna', 'C09p09120' => 'bna', 'CAN.G19.15' => 'can', 'CAN.G251.10' => 'can', 'CAN.G251.9' => 'can', 'CAN.G398.24' => 'can', 'CAN.G410.32' => 'can', 'CAN.G881.2' => 'can', 'CANSAT01G3025' => 'cansat', 'CANSAT78G1211' => 'cansat', 'CANSAT78G1218' => 'cansat', 'CANSAT78G1521' => 'cansat', 'CANSAT78G1670' => 'cansat', 'CARHR003600' => 'chi', 'CARHR003610' => 'chi', 'CARHR006290' => 'chi', 'CARHR006430' => 'chi', 'CARHR124110' => 'chi', 'CARHR203870' => 'chi', 'CARHR203880' => 'chi', 'CARHR203890' => 'chi', 'CARHR276880' => 'chi', 'Carub.0001s0346' => 'cru', 'Carub.0001s0347' => 'cru', 'Carub.0001s0607' => 'cru', 'Carub.0003s2768' => 'cru', 'Carub.0003s2769' => 'cru', 'Carub.0004s1178' => 'cru', 'Carub.0006s0806' => 'cru', 'Carub.0006s0807' => 'cru', 'Carub.0006s0808' => 'cru', 'Carub.0008s0501' => 'cru', 'Carub.0008s2379' => 'cru', 'Ca_08655_v3' => 'car', 'Ca_08922_v3' => 'car', 'Ca_08923_v3' => 'car', 'Ca_09119_v3' => 'car', 'Ca_09703_v3' => 'car', 'Ca_09705_v3' => 'car', 'Ca_09835_v3' => 'car', 'Ca_26403_v3' => 'car', 'Ca_30719_v3' => 'car', 'CBR_g17958' => 'cbr', 'CBR_g40516' => 'cbr', 'Cc00_g05350' => 'ccan', 'Cc01_g18690' => 'ccan', 'Cc03_g04830' => 'ccan', 'Cc03_g04850' => 'ccan', 'CDE02G4469' => 'cde', 'CDE06G0883' => 'cde', 'CDE06G1295' => 'cde', 'CDE06G1390' => 'cde', 'CDE07G0584' => 'cde', 'CDE07G1084' => 'cde', 'CDE08G1259' => 'cde', 'Cfa002341' => 'cfa', 'Cfa024337' => 'cfa', 'Ciclev10004749m.g' => 'ccl', 'Ciclev10006127m.g' => 'ccl', 'Ciclev10019720m.g' => 'ccl', 'Ciclev10022652m.g' => 'ccl', 'CiPaw.01G190400' => 'cil', 'CiPaw.01G190500' => 'cil', 'CiPaw.02G116400' => 'cil', 'CiPaw.02G116500' => 'cil', 'CiPaw.04G183000' => 'cil', 'CiPaw.04G183300' => 'cil', 'ClCG05G004610' => 'cla', 'ClCG05G004620' => 'cla', 'ClCG06G006730' => 'cla', 'ClCG06G006740' => 'cla', 'ClCG11G003690' => 'cla', 'COL.COLO4_08276' => 'col', 'COL.COLO4_08277' => 'col', 'COL.COLO4_15787' => 'col', 'COL.COLO4_15789' => 'col', 'Cpa.g.c44815' => 'cpa', 'Cpa.g.sc52.144' => 'cpa', 'Cpa.g.sc58.46' => 'cpa', 'Cpa.g.sc58.47' => 'cpa', 'Cre08.g360900' => 'cre', 'CsaV3_2G013030' => 'csa', 'CsaV3_2G013050' => 'csa', 'CsaV3_2G015620' => 'csa', 'CsaV3_3G012590' => 'csa', 'CsaV3_3G012600' => 'csa', 'CSS0001641' => 'camsi', 'CSS0008310' => 'camsi', 'CSS0013011' => 'camsi', 'CSS0017147' => 'camsi', 'CSS0022970' => 'camsi', 'CSS0025655' => 'camsi', 'CSS0028665' => 'camsi', 'CSS0029117' => 'camsi', 'CSS0032024' => 'camsi', 'CSS0039681' => 'camsi', 'CSS0046516' => 'camsi', 'CSS0050307' => 'camsi', 'DCAR_005871' => 'dca', 'DCAR_007342' => 'dca', 'DCAR_024228' => 'dca', 'DCAR_027277' => 'dca', 'DCAR_030718' => 'dca', 'Dinv20287' => 'din', 'Dinv22461' => 'din', 'Dinv22464' => 'din', 'Dinv29912' => 'din', 'Dinv29913' => 'din', 'Dinv34580' => 'din', 'Dinv34582' => 'din', 'Dinv44632' => 'din', 'Duzib052G0266' => 'dzi', 'Duzib133G0907' => 'dzi', 'Duzib133G1034' => 'dzi', 'Duzib138G0207' => 'dzi', 'Duzib138G0491' => 'dzi', 'Duzib151G0812' => 'dzi', 'Duzib151G1166' => 'dzi', 'Duzib168G0192' => 'dzi', 'Duzib211G0077' => 'dzi', 'Duzib212G0429' => 'dzi', 'Duzib212G0472' => 'dzi', 'ECA233G2617' => 'eca', 'ECA236G4188' => 'eca', 'ECA240G0936' => 'eca', 'ECA240G1129' => 'eca', 'ECA247G0623' => 'eca', 'EL10Ac5g10451' => 'bvu', 'EL10Ac5g10453' => 'bvu', 'EL10Ac5g10894' => 'bvu', 'Eucgr.H00192' => 'egr', 'Eucgr.H00193' => 'egr', 'Eucgr.H00194' => 'egr', 'Eucgr.J01562' => 'egr', 'Eucgr.K03301' => 'egr', 'FAN02G0632' => 'fan', 'FAN05G5378' => 'fan', 'FAN09G3247' => 'fan', 'FAN12G0435' => 'fan', 'FAN12G2426' => 'fan', 'FAN14G1707' => 'fan', 'FAN14G4725' => 'fan', 'FAN15G2071' => 'fan', 'FAN17G3065' => 'fan', 'FAN19G1376' => 'fan', 'FAN20G0354' => 'fan', 'FAN20G2429' => 'fan', 'FAN20G2658' => 'fan', 'FAN24G2343' => 'fan', 'FAN27G2362' => 'fan', 'FAN28G1765' => 'fan', 'FvH4_1g16020' => 'fve', 'FvH4_2g04890' => 'fve', 'FvH4_2g22270' => 'fve', 'FvH4_4g02630' => 'fve', 'FvH4_4g02640' => 'fve', 'FvH4_6g02650' => 'fve', 'Glyma.02G140600' => 'gma', 'Glyma.03G159900' => 'gma', 'Glyma.05G234800' => 'gma', 'Glyma.07G269600' => 'gma', 'Glyma.08G042300' => 'gma', 'Glyma.10G033500' => 'gma', 'Glyma.10G185200' => 'gma', 'Glyma.17G004300' => 'gma', 'Glyma.19G161900' => 'gma', 'Glyma.20G205100' => 'gma', 'Glyma.20G205200' => 'gma', 'Gohir.A01G139101' => 'ghi', 'Gohir.A02G035600' => 'ghi', 'Gohir.A02G117901' => 'ghi', 'Gohir.A07G210100' => 'ghi', 'Gohir.A07G210200' => 'ghi', 'Gohir.A08G061100' => 'ghi', 'Gohir.A09G223000' => 'ghi', 'Gohir.A09G223100' => 'ghi', 'Gohir.A10G113900' => 'ghi', 'Gohir.A10G114000' => 'ghi', 'Gohir.D02G042300' => 'ghi', 'Gohir.D07G216100' => 'ghi', 'Gohir.D07G216200' => 'ghi', 'Gohir.D08G070400' => 'ghi', 'Gohir.D09G225000' => 'ghi', 'Gohir.D09G225100' => 'ghi', 'Gohir.D10G152300' => 'ghi', 'Gohir.D10G153200' => 'ghi', 'Gohir.D11G133701' => 'ghi', 'Gorai.004G074100' => 'gra', 'Gorai.005G046800' => 'gra', 'Gorai.006G246500' => 'gra', 'Gorai.006G246600' => 'gra', 'Gorai.007G142900' => 'gra', 'Gorai.011G171000' => 'gra', 'Gorai.011G171100' => 'gra', 'Gorai.013G104300' => 'gra', 'Gorai.013G104400' => 'gra', 'GSVIVG01000754001' => 'vvi', 'GSVIVG01000756001' => 'vvi', 'GSVIVG01010903001' => 'vvi', 'GSVIVG01017623001' => 'vvi', 'GSVIVG01018113001' => 'vvi', 'GSVIVG01018116001' => 'vvi', 'GSVIVG01018118001' => 'vvi', 'HanXRQChr03g0076211' => 'han', 'HanXRQChr03g0092431' => 'han', 'HanXRQChr03g0092441' => 'han', 'HanXRQChr03g0092591' => 'han', 'HanXRQChr03g0092671' => 'han', 'HanXRQChr03g0092681' => 'han', 'HanXRQChr03g0092691' => 'han', 'HanXRQChr03g0092701' => 'han', 'HanXRQChr03g0092721' => 'han', 'HanXRQChr03g0092731' => 'han', 'HanXRQChr04g0113681' => 'han', 'HanXRQChr10g0281371' => 'han', 'HanXRQChr11g0337141' => 'han', 'HanXRQChr13g0424521' => 'han', 'HanXRQChr13g0424531' => 'han', 'HanXRQChr13g0424541' => 'han', 'HanXRQChr16g0498221' => 'han', 'Haze_04377' => 'cav', 'Haze_11298' => 'cav', 'Haze_24547' => 'cav', 'Haze_24550' => 'cav', 'Haze_26587' => 'cav', 'Hma1.2p1_0650F.1_g195410' => 'hma', 'Hma1.2p1_0893F.1_g233470' => 'hma', 'HPP92_006508' => 'vpl', 'HPP92_024780' => 'vpl', 'Hund02688' => 'sun', 'Hund09380' => 'sun', 'Hund09381' => 'sun', 'Hund09832' => 'sun', 'Hund09833' => 'sun', 'Hund11351' => 'sun', 'Hund11513' => 'sun', 'Lalb_Chr06g0162591' => 'lal', 'Lalb_Chr06g0162601' => 'lal', 'Lalb_Chr06g0169321' => 'lal', 'Lalb_Chr09g0330951' => 'lal', 'Lalb_Chr16g0387631' => 'lal', 'Lalb_Chr21g0306241' => 'lal', 'Lalb_Chr25g0290051' => 'lal', 'Lalb_Chr25g0290061' => 'lal', 'Lalb_Chr25g0290071' => 'lal', 'Lj1g0003876' => 'lja', 'Lj1P1207T36' => 'lonja', 'Lj2C1156G12' => 'lonja', 'Lj3A793G39' => 'lonja', 'Lj3C580G2' => 'lonja', 'Lj3C780G2' => 'lonja', 'Lj3C780T4' => 'lonja', 'Lj3C793G9' => 'lonja', 'Lj4g0012960' => 'lja', 'Lj5g0021252' => 'lja', 'Lj5g0021484' => 'lja', 'Lj5g0024528' => 'lja', 'Lj6A399T12' => 'lonja', 'Lj6A656G65' => 'lonja', 'Lsat_1_v5_gn_3_125500' => 'lsa', 'Lsat_1_v5_gn_3_125540' => 'lsa', 'Lsat_1_v5_gn_5_72701' => 'lsa', 'Lsat_1_v5_gn_8_91560' => 'lsa', 'Lsat_1_v5_gn_9_9640' => 'lsa', 'Manes.01G200600' => 'mes', 'Manes.01G200700' => 'mes', 'Manes.03G168900' => 'mes', 'Manes.03G169000' => 'mes', 'Manes.05G085801' => 'mes', 'Manes.05G086200' => 'mes', 'Manes.15G036700' => 'mes', 'Manes.15G036900' => 'mes', 'Mapoly0004s0172' => 'mpo', 'Mapoly0023s0001' => 'mpo', 'Mapoly0142s0012' => 'mpo', 'MBI01_g32854_MAGBIO' => 'mbi', 'MBI11_g24427_MAGBIO' => 'mbi', 'MBI11_g47319_MAGBIO' => 'mbi', 'MCO01G433' => 'mco', 'MD00G1187800' => 'mdo', 'MD04G1226500' => 'mdo', 'MD05G1203900' => 'mdo', 'MD10G1191100' => 'mdo', 'MD12G1243500' => 'mdo', 'MD13G1207000' => 'mdo', 'MD13G1207100' => 'mdo', 'MD16G1208600' => 'mdo', 'Medtr1g050352' => 'mtr', 'Medtr1g070385' => 'mtr', 'Medtr1g070450' => 'mtr', 'Medtr1g075200' => 'mtr', 'Medtr1g075250' => 'mtr', 'Medtr1g075260' => 'mtr', 'Medtr1g475250' => 'mtr', 'Medtr4g075450' => 'mtr', 'Medtr7g096300' => 'mtr', 'Medtr8g105110' => 'mtr', 'MELO3C006470.2' => 'cme', 'MELO3C006471.2' => 'cme', 'MELO3C020772.2' => 'cme', 'MELO3C026780.2' => 'cme', 'MELO3C026781.2' => 'cme', 'Migut.D00390' => 'egut', 'Migut.G00435' => 'egut', 'Migut.G00436' => 'egut', 'Migut.G00718' => 'egut', 'MSTRG.21891' => 'ama', 'MSTRG.26910' => 'ama', 'MSTRG.4099' => 'ama', 'MSTRG.9925' => 'ama', 'Nitab4.5_0000165g0010' => 'nta', 'Nitab4.5_0000209g0180' => 'nta', 'Nitab4.5_0000244g0440' => 'nta', 'Nitab4.5_0000525g0220' => 'nta', 'Nitab4.5_0001597g0020' => 'nta', 'Nitab4.5_0001878g0040' => 'nta', 'Nitab4.5_0001878g0060' => 'nta', 'Nitab4.5_0002838g0100' => 'nta', 'Nitab4.5_0002838g0120' => 'nta', 'Nitab4.5_0004798g0030' => 'nta', 'Nitab4.5_0005420g0010' => 'nta', 'Nitab4.5_0005507g0010' => 'nta', 'Nitab4.5_0005574g0020' => 'nta', 'Nitab4.5_0005838g0010' => 'nta', 'Nitab4.5_0010580g0020' => 'nta', 'Nn1g02599' => 'nnu', 'Nn1g02608' => 'nnu', 'Nn3g17742' => 'nnu', 'Nn3g19534' => 'nnu', 'Nn3g19535' => 'nnu', 'Oeu008790.1' => 'oeu', 'Oeu008792.1' => 'oeu', 'Oeu032590.1' => 'oeu', 'Oeu035349.1' => 'oeu', 'Oeu049791.1' => 'oeu', 'Os01g0774500' => 'osa', 'Os03g0628800' => 'osa', 'Os03g0798600' => 'osa', 'Os05g0508800' => 'osa', 'Peaxi162Scf00036g02018' => 'pax', 'Peaxi162Scf00578g00032' => 'pax', 'Peaxi162Scf00578g00317' => 'pax', 'Peaxi162Scf00785g00114' => 'pax', 'Peaxi162Scf00813g00119' => 'pax', 'Peaxi162Scf00906g00227' => 'pax', 'PGR004G0875' => 'pgr', 'PGR004G2424' => 'pgr', 'PGR031G1239' => 'pgr', 'PGR031G2474' => 'pgr', 'PGR044G0423' => 'pgr', 'PGSC0003DMG400001128' => 'stu', 'PGSC0003DMG400007336' => 'stu', 'PGSC0003DMG400016318' => 'stu', 'PGSC0003DMG400016319' => 'stu', 'PGSC0003DMG400018074' => 'stu', 'Phvul.001G157700' => 'pvu', 'Phvul.002G148550' => 'pvu', 'Phvul.002G320200' => 'pvu', 'Phvul.003G089200' => 'pvu', 'Phvul.007G126000' => 'pvu', 'Phvul.007G126100' => 'pvu', 'Phvul.007G178000' => 'pvu', 'Phvul.007G178200' => 'pvu', 'Potri.002G043000' => 'ptr', 'Potri.002G043200' => 'ptr', 'Potri.003G123750' => 'ptr', 'Potri.005G055401' => 'ptr', 'Potri.005G219700' => 'ptr', 'Potri.005G220000' => 'ptr', 'Potri.008G161901' => 'ptr', 'Potri.008G162000' => 'ptr', 'Potri.008G162400' => 'ptr', 'Potri.010G076900' => 'ptr', 'Pp3c12_9180' => 'ppa', 'Pp3c13_19770' => 'ppa', 'Pp3c14_22950' => 'ppa', 'Pp3c16_12160' => 'ppa', 'Pp3c27_7820' => 'ppa', 'Pp3c2_3490' => 'ppa', 'Pp3c3_23700' => 'ppa', 'Pp3c3_36520' => 'ppa', 'Pp3c4_15250' => 'ppa', 'PRCOL_00007002' => 'pco', 'Prupe.1G030600' => 'ppe', 'Prupe.1G030700' => 'ppe', 'Prupe.6G345200' => 'ppe', 'Prupe.8G230300' => 'ppe', 'Prupe.8G230500' => 'ppe', 'Psat3g059600' => 'psa', 'Psat5g200920' => 'psa', 'Psat6g056440' => 'psa', 'Psat6g057360' => 'psa', 'Psat6g134120' => 'psa', 'Psat6g134160' => 'psa', 'Psat7g008640' => 'psa', 'Psat7g185240' => 'psa', 'PSO017G1330' => 'pso', 'PSO063G6097' => 'pso', 'PSO170G0835' => 'pso', 'PSO170G2499' => 'pso', 'PSO210G5058' => 'pso', 'PSO210G6154' => 'pso', 'PSO585G0031' => 'pso', 'PSO832G0264' => 'pso', 'PSO832G4288' => 'pso', 'QL03p027355' => 'qlo', 'QL03p027430' => 'qlo', 'QL04p081380' => 'qlo', 'QL06p015642' => 'qlo', 'QL06p015650' => 'qlo', 'QL06p015686' => 'qlo', 'QL12p042927' => 'qlo', 'QL93p1863_0035' => 'qlo', 'RcHm_v2.0_Chr3g0450581' => 'rch', 'RcHm_v2.0_Chr4g0390371' => 'rch', 'RcHm_v2.0_Chr4g0390381' => 'rch', 'RcHm_v2.0_Chr4g0390491' => 'rch', 'RcHm_v2.0_Chr4g0390501' => 'rch', 'RcHm_v2.0_Chr6g0289231' => 'rch', 'Rhsim04G0190400' => 'rsi', 'Rhsim04G0190500' => 'rsi', 'Rhsim04G0190600' => 'rsi', 'Rhsim13G0031400' => 'rsi', 'Rhsim13G0165600' => 'rsi', 'RhsimUnG0114600' => 'rsi', 'RhsimUnG0114700' => 'rsi', 'Sabra02G0034800' => 'sbr', 'Sabra02G0035100' => 'sbr', 'Sabra05G0168600' => 'sbr', 'Sabra05G0168800' => 'sbr', 'Sabra08G0123700' => 'sbr', 'Sabra10G0031900' => 'sbr', 'Sabra13G0039000' => 'sbr', 'SalBow2G0782' => 'sbo', 'SalBow2G1403' => 'sbo', 'SalBow4G0074' => 'sbo', 'SalBow4G2635' => 'sbo', 'SalBow5G3010' => 'sbo', 'Sc05g0000870' => 'sci', 'Sc05g0000890' => 'sci', 'Sc13g0005000' => 'sci', 'Sc13g0005030' => 'sci', 'Sc19g0003790' => 'sci', 'Sc19g0003800' => 'sci', 'Sed0003467' => 'sed', 'Sed0009355' => 'sed', 'Sed0009894' => 'sed', 'Sed0011972' => 'sed', 'Sed0021483' => 'sed', 'Sed0021750' => 'sed', 'Sed0026279' => 'sed', 'SEGI_05312' => 'sgi', 'SEGI_10112' => 'sgi', 'SEGI_15835' => 'sgi', 'SEGI_30386' => 'sgi', 'SEGI_34122' => 'sgi', 'SEGI_35063' => 'sgi', 'SGA_v2.0_scaffold101G29794' => 'sas', 'SGA_v2.0_scaffold1G00573' => 'sas', 'SGA_v2.0_scaffold79G25637' => 'sas', 'SGA_v2.0_scaffold88G27283' => 'sas', 'SGA_v2.0_scaffold88G27285' => 'sas', 'SGA_v2.0_scaffold88G27331' => 'sas', 'SHI09937' => 'shi', 'SMO119G0302' => 'smo', 'SMO137G0231' => 'smo', 'SMO367G1151' => 'smo', 'Solyc02g082000.3' => 'sly', 'Solyc06g031670.3' => 'sly', 'Solyc06g053810.3' => 'sly', 'Solyc07g025457.1' => 'sly', 'Solyc08g059740.1' => 'sly', 'Solyc08g059750.3' => 'sly', 'Solyc09g083370.3' => 'sly', 'Solyc12g038950.3' => 'sly', 'Sopen02g026630' => 'spe', 'Sopen06g018930' => 'spe', 'Sopen06g018940' => 'spe', 'Sopen08g009460' => 'spe', 'Sopen09g032290' => 'spe', 'Sp1g03080' => 'spa', 'Sp1g03090' => 'spa', 'Sp1g05480' => 'spa', 'Sp2g07860' => 'spa', 'Sp2g08430' => 'spa', 'Sp2g08440' => 'spa', 'Sp2g26200' => 'spa', 'Sp4g13170' => 'spa', 'Sp6g33840' => 'spa', 'SpUn1204_0010' => 'spa', 'TAR365G0908' => 'tar', 'TAR381G1270' => 'tar', 'TAR381G1651' => 'tar', 'TAR625G1131' => 'tar', 'TAR633G0962' => 'tar', 'TAR633G1729' => 'tar', 'TAR633G1864' => 'tar', 'TAR636G0221' => 'tar', 'TAR636G0314' => 'tar', 'TAR636G3202' => 'tar', 'THA.LOC104800805' => 'tha', 'THA.LOC104801096' => 'tha', 'THA.LOC104801555' => 'tha', 'THA.LOC104808491' => 'tha', 'THA.LOC104808595' => 'tha', 'THA.LOC104815985' => 'tha', 'THA.LOC104822250' => 'tha', 'THA.LOC104826071' => 'tha', 'Thecc.01G265200' => 'tca', 'Thecc.01G265300' => 'tca', 'Thecc.01G265700' => 'tca', 'Thecc.03G109100' => 'tca', 'Thecc.04G245900' => 'tca', 'Thecc.04G246000' => 'tca', 'Thhalv10003334m.g' => 'esa', 'Thhalv10005508m.g' => 'esa', 'Thhalv10005643m.g' => 'esa', 'Thhalv10007316m.g' => 'esa', 'Thhalv10009006m.g' => 'esa', 'Thhalv10009309m.g' => 'esa', 'Thhalv10014917m.g' => 'esa', 'Thhalv10014919m.g' => 'esa', 'Thhalv10015393m.g' => 'esa', 'Thhalv10016515m.g' => 'esa', 'Thhalv10029242m.g' => 'esa', 'TPR.G16654' => 'tpr', 'TPR.G20589' => 'tpr', 'TPR.G23029' => 'tpr', 'TPR.G27731' => 'tpr', 'TPR.G28889' => 'tpr', 'TPR.G28899' => 'tpr', 'TPR.G30846' => 'tpr', 'TPR.G5452' => 'tpr', 'TPR.G5713' => 'tpr', 'TPR.G9046' => 'tpr', 'TPR.G9061' => 'tpr', 'TWI09G1075' => 'twi', 'TWI12G0806' => 'twi', 'TWI18G0108' => 'twi', 'TWI53G1361' => 'twi', 'TWI73G0185' => 'twi', 'TWI73G0427' => 'twi', 'unitig_37.g12001' => 'ugi', 'unitig_747.g21660' => 'ugi', 'unitig_748.g7232' => 'ugi', 'unitig_748.g7315' => 'ugi', 'unitig_85.g27262' => 'ugi', 'unitig_92.g28220' => 'ugi', 'vmacro02632' => 'vma', 'vmacro08410' => 'vma', 'vmacro08411' => 'vma', 'vmacro15407' => 'vma', 'VMungo0251G3619' => 'vmu', 'VMungo0720G1204' => 'vmu', 'VMungo0720G1918' => 'vmu', 'VMungo0720G2387' => 'vmu', 'VMungo0720G2961' => 'vmu', 'VMungo1215G2154' => 'vmu', 'VMungo1383G2411' => 'vmu', 'Zm00001eb051130' => 'zma', 'Zm00001eb116830' => 'zma', 'Zm00001eb116850' => 'zma', 'Zm00001eb151740' => 'zma', 'Zm00001eb292360' => 'zma', 'Zm00001eb301640' => 'zma' ), 'gf_id' => 'HOM05D000856', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000856' ), 'data_identifier' => 'HOM05D000856', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000856', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p00010' => 'bna', 'A03p04160' => 'bna', 'A03p17160' => 'bna', 'A04p23370' => 'bna', 'A05p14860' => 'bna', 'A08p37020' => 'bna', 'A09p08050' => 'bna', 'A09p66800' => 'bna', 'A09p67940' => 'bna', 'A10p02680' => 'bna', 'A10p05320' => 'bna', 'Aa31LG1G20560' => 'aar', 'Aa31LG1G20610' => 'aar', 'Aa31LG1G7810' => 'aar', 'Aa31LG5G3590' => 'aar', 'Aa31LG5G6140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3819' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4683' => 'aag', 'Actinidia04480' => 'ach', 'Actinidia05466' => 'ach', 'Actinidia08445' => 'ach', 'Actinidia21170' => 'ach', 'Actinidia24812' => 'ach', 'Actinidia24951' => 'ach', 'Actinidia40088' => 'ach', 'Ah.02g111660' => 'amhyb', 'Ah.11g048900' => 'amhyb', 'Ah.11g049910' => 'amhyb', 'AL1G13870' => 'aly', 'AL1G13880' => 'aly', 'AL1G16760' => 'aly', 'AL390U10020' => 'aly', 'AL4G25520' => 'aly', 'AL6G19890' => 'aly', 'AL6G19900' => 'aly', 'AL6G19910' => 'aly', 'AL8G40100' => 'aly', 'Aqoxy2G03562' => 'aox', 'Aqoxy5G00316' => 'aox', 'Aqoxy5G00926' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1628KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1H403S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2FU6SJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.882I6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8YRY2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YN1SN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AF70II' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZA8L1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F916KL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHRD8H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KTZ8QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S22EMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8M29T' => 'arhy', 'AT1G04270' => 'ath', 'AT1G04280' => 'ath', 'AT1G06750' => 'ath', 'AT1G33850' => 'ath', 'AT2G30630' => 'ath', 'AT5G09490' => 'ath', 'AT5G09500' => 'ath', 'AT5G09510' => 'ath', 'AT5G43640' => 'ath', 'AT5G63070' => 'ath', 'ATR0605G315' => 'atr', 'Atru.chr11.175' => 'acertr', 'Atru.chr11.653' => 'acertr', 'Atru.chr3.1616' => 'acertr', 'Atru.chr4.2230' => 'acertr', 'Atru.chr4.2232' => 'acertr', 'Atru.chr5.1598' => 'acertr', 'Atru.chr5.1600' => 'acertr', 'Atru.chr5.2188' => 'acertr', 'AUR62008326' => 'cqu', 'AUR62011922' => 'cqu', 'AUR62011924' => 'cqu', 'AUR62021771' => 'cqu', 'AUR62032237' => 'cqu', 'AUR62032240' => 'cqu', 'BcaB01g05572' => 'bca', 'BcaB02g10337' => 'bca', 'BcaB04g19944' => 'bca', 'BcaB05g21548' => 'bca', 'BcaB05g21549' => 'bca', 'BcaB05g23227' => 'bca', 'BcaB06g26256' => 'bca', 'BcaB06g26257' => 'bca', 'BcaB06g28379' => 'bca', 'BcaC02g11159' => 'bca', 'BcaC03g13258' => 'bca', 'BcaC03g13259' => 'bca', 'BcaC05g24456' => 'bca', 'BcaC05g24457' => 'bca', 'BcaC07g36922' => 'bca', 'BcaC07g36923' => 'bca', 'BcaC07g42050' => 'bca', 'BcaC07g42176' => 'bca', 'BcaC07g42195' => 'bca', 'BcaC07g42196' => 'bca', 'BcaNung06674' => 'bca', 'BolC2t06351H' => 'bol', 'BolC2t06352H' => 'bol', 'BolC3t12993H' => 'bol', 'BolC4t23525H' => 'bol', 'BolC4t27475H' => 'bol', 'BolC5t29025H' => 'bol', 'BolC5t29026H' => 'bol', 'BolC8t46898H' => 'bol', 'BolC8t46899H' => 'bol', 'BolC8t52630H' => 'bol', 'BolC8t52765H' => 'bol', 'BolC9t53824H' => 'bol', 'BraA03t09760Z' => 'bra', 'BraA03t10990Z' => 'bra', 'BraA05t20413Z' => 'bra', 'BraA08t35602Z' => 'bra', 'BraA09t36458Z' => 'bra', 'BraA09t42018Z' => 'bra', 'BraA09t42129Z' => 'bra', 'BraA10t42536Z' => 'bra', 'BraA10t42537Z' => 'bra', 'C01p10690' => 'bna', 'C02p03890' => 'bna', 'C02p03900' => 'bna', 'C03p04620' => 'bna', 'C04p19870' => 'bna', 'C04p59670' => 'bna', 'C05p02460' => 'bna', 'C05p02470' => 'bna', 'C08p00980' => 'bna', 'C08p00990' => 'bna', 'C08p51030' => 'bna', 'C08p52360' => 'bna', 'C09p09120' => 'bna', 'CAN.G19.15' => 'can', 'CAN.G251.10' => 'can', 'CAN.G251.9' => 'can', 'CAN.G398.24' => 'can', 'CAN.G410.32' => 'can', 'CAN.G881.2' => 'can', 'CANSAT01G3025' => 'cansat', 'CANSAT78G1211' => 'cansat', 'CANSAT78G1218' => 'cansat', 'CANSAT78G1521' => 'cansat', 'CANSAT78G1670' => 'cansat', 'CARHR003600' => 'chi', 'CARHR003610' => 'chi', 'CARHR006290' => 'chi', 'CARHR006430' => 'chi', 'CARHR124110' => 'chi', 'CARHR203870' => 'chi', 'CARHR203880' => 'chi', 'CARHR203890' => 'chi', 'CARHR276880' => 'chi', 'Carub.0001s0346' => 'cru', 'Carub.0001s0347' => 'cru', 'Carub.0001s0607' => 'cru', 'Carub.0003s2768' => 'cru', 'Carub.0003s2769' => 'cru', 'Carub.0004s1178' => 'cru', 'Carub.0006s0806' => 'cru', 'Carub.0006s0807' => 'cru', 'Carub.0006s0808' => 'cru', 'Carub.0008s0501' => 'cru', 'Carub.0008s2379' => 'cru', 'Ca_08655_v3' => 'car', 'Ca_08922_v3' => 'car', 'Ca_08923_v3' => 'car', 'Ca_09119_v3' => 'car', 'Ca_09703_v3' => 'car', 'Ca_09705_v3' => 'car', 'Ca_09835_v3' => 'car', 'Ca_26403_v3' => 'car', 'Ca_30719_v3' => 'car', 'CBR_g17958' => 'cbr', 'CBR_g40516' => 'cbr', 'Cc00_g05350' => 'ccan', 'Cc01_g18690' => 'ccan', 'Cc03_g04830' => 'ccan', 'Cc03_g04850' => 'ccan', 'CDE02G4469' => 'cde', 'CDE06G0883' => 'cde', 'CDE06G1295' => 'cde', 'CDE06G1390' => 'cde', 'CDE07G0584' => 'cde', 'CDE07G1084' => 'cde', 'CDE08G1259' => 'cde', 'Cfa002341' => 'cfa', 'Cfa024337' => 'cfa', 'Ciclev10004749m.g' => 'ccl', 'Ciclev10006127m.g' => 'ccl', 'Ciclev10019720m.g' => 'ccl', 'Ciclev10022652m.g' => 'ccl', 'CiPaw.01G190400' => 'cil', 'CiPaw.01G190500' => 'cil', 'CiPaw.02G116400' => 'cil', 'CiPaw.02G116500' => 'cil', 'CiPaw.04G183000' => 'cil', 'CiPaw.04G183300' => 'cil', 'ClCG05G004610' => 'cla', 'ClCG05G004620' => 'cla', 'ClCG06G006730' => 'cla', 'ClCG06G006740' => 'cla', 'ClCG11G003690' => 'cla', 'COL.COLO4_08276' => 'col', 'COL.COLO4_08277' => 'col', 'COL.COLO4_15787' => 'col', 'COL.COLO4_15789' => 'col', 'Cpa.g.c44815' => 'cpa', 'Cpa.g.sc52.144' => 'cpa', 'Cpa.g.sc58.46' => 'cpa', 'Cpa.g.sc58.47' => 'cpa', 'Cre08.g360900' => 'cre', 'CsaV3_2G013030' => 'csa', 'CsaV3_2G013050' => 'csa', 'CsaV3_2G015620' => 'csa', 'CsaV3_3G012590' => 'csa', 'CsaV3_3G012600' => 'csa', 'CSS0001641' => 'camsi', 'CSS0008310' => 'camsi', 'CSS0013011' => 'camsi', 'CSS0017147' => 'camsi', 'CSS0022970' => 'camsi', 'CSS0025655' => 'camsi', 'CSS0028665' => 'camsi', 'CSS0029117' => 'camsi', 'CSS0032024' => 'camsi', 'CSS0039681' => 'camsi', 'CSS0046516' => 'camsi', 'CSS0050307' => 'camsi', 'DCAR_005871' => 'dca', 'DCAR_007342' => 'dca', 'DCAR_024228' => 'dca', 'DCAR_027277' => 'dca', 'DCAR_030718' => 'dca', 'Dinv20287' => 'din', 'Dinv22461' => 'din', 'Dinv22464' => 'din', 'Dinv29912' => 'din', 'Dinv29913' => 'din', 'Dinv34580' => 'din', 'Dinv34582' => 'din', 'Dinv44632' => 'din', 'Duzib052G0266' => 'dzi', 'Duzib133G0907' => 'dzi', 'Duzib133G1034' => 'dzi', 'Duzib138G0207' => 'dzi', 'Duzib138G0491' => 'dzi', 'Duzib151G0812' => 'dzi', 'Duzib151G1166' => 'dzi', 'Duzib168G0192' => 'dzi', 'Duzib211G0077' => 'dzi', 'Duzib212G0429' => 'dzi', 'Duzib212G0472' => 'dzi', 'ECA233G2617' => 'eca', 'ECA236G4188' => 'eca', 'ECA240G0936' => 'eca', 'ECA240G1129' => 'eca', 'ECA247G0623' => 'eca', 'EL10Ac5g10451' => 'bvu', 'EL10Ac5g10453' => 'bvu', 'EL10Ac5g10894' => 'bvu', 'Eucgr.H00192' => 'egr', 'Eucgr.H00193' => 'egr', 'Eucgr.H00194' => 'egr', 'Eucgr.J01562' => 'egr', 'Eucgr.K03301' => 'egr', 'FAN02G0632' => 'fan', 'FAN05G5378' => 'fan', 'FAN09G3247' => 'fan', 'FAN12G0435' => 'fan', 'FAN12G2426' => 'fan', 'FAN14G1707' => 'fan', 'FAN14G4725' => 'fan', 'FAN15G2071' => 'fan', 'FAN17G3065' => 'fan', 'FAN19G1376' => 'fan', 'FAN20G0354' => 'fan', 'FAN20G2429' => 'fan', 'FAN20G2658' => 'fan', 'FAN24G2343' => 'fan', 'FAN27G2362' => 'fan', 'FAN28G1765' => 'fan', 'FvH4_1g16020' => 'fve', 'FvH4_2g04890' => 'fve', 'FvH4_2g22270' => 'fve', 'FvH4_4g02630' => 'fve', 'FvH4_4g02640' => 'fve', 'FvH4_6g02650' => 'fve', 'Glyma.02G140600' => 'gma', 'Glyma.03G159900' => 'gma', 'Glyma.05G234800' => 'gma', 'Glyma.07G269600' => 'gma', 'Glyma.08G042300' => 'gma', 'Glyma.10G033500' => 'gma', 'Glyma.10G185200' => 'gma', 'Glyma.17G004300' => 'gma', 'Glyma.19G161900' => 'gma', 'Glyma.20G205100' => 'gma', 'Glyma.20G205200' => 'gma', 'Gohir.A01G139101' => 'ghi', 'Gohir.A02G035600' => 'ghi', 'Gohir.A02G117901' => 'ghi', 'Gohir.A07G210100' => 'ghi', 'Gohir.A07G210200' => 'ghi', 'Gohir.A08G061100' => 'ghi', 'Gohir.A09G223000' => 'ghi', 'Gohir.A09G223100' => 'ghi', 'Gohir.A10G113900' => 'ghi', 'Gohir.A10G114000' => 'ghi', 'Gohir.D02G042300' => 'ghi', 'Gohir.D07G216100' => 'ghi', 'Gohir.D07G216200' => 'ghi', 'Gohir.D08G070400' => 'ghi', 'Gohir.D09G225000' => 'ghi', 'Gohir.D09G225100' => 'ghi', 'Gohir.D10G152300' => 'ghi', 'Gohir.D10G153200' => 'ghi', 'Gohir.D11G133701' => 'ghi', 'Gorai.004G074100' => 'gra', 'Gorai.005G046800' => 'gra', 'Gorai.006G246500' => 'gra', 'Gorai.006G246600' => 'gra', 'Gorai.007G142900' => 'gra', 'Gorai.011G171000' => 'gra', 'Gorai.011G171100' => 'gra', 'Gorai.013G104300' => 'gra', 'Gorai.013G104400' => 'gra', 'GSVIVG01000754001' => 'vvi', 'GSVIVG01000756001' => 'vvi', 'GSVIVG01010903001' => 'vvi', 'GSVIVG01017623001' => 'vvi', 'GSVIVG01018113001' => 'vvi', 'GSVIVG01018116001' => 'vvi', 'GSVIVG01018118001' => 'vvi', 'HanXRQChr03g0076211' => 'han', 'HanXRQChr03g0092431' => 'han', 'HanXRQChr03g0092441' => 'han', 'HanXRQChr03g0092591' => 'han', 'HanXRQChr03g0092671' => 'han', 'HanXRQChr03g0092681' => 'han', 'HanXRQChr03g0092691' => 'han', 'HanXRQChr03g0092701' => 'han', 'HanXRQChr03g0092721' => 'han', 'HanXRQChr03g0092731' => 'han', 'HanXRQChr04g0113681' => 'han', 'HanXRQChr10g0281371' => 'han', 'HanXRQChr11g0337141' => 'han', 'HanXRQChr13g0424521' => 'han', 'HanXRQChr13g0424531' => 'han', 'HanXRQChr13g0424541' => 'han', 'HanXRQChr16g0498221' => 'han', 'Haze_04377' => 'cav', 'Haze_11298' => 'cav', 'Haze_24547' => 'cav', 'Haze_24550' => 'cav', 'Haze_26587' => 'cav', 'Hma1.2p1_0650F.1_g195410' => 'hma', 'Hma1.2p1_0893F.1_g233470' => 'hma', 'HPP92_006508' => 'vpl', 'HPP92_024780' => 'vpl', 'Hund02688' => 'sun', 'Hund09380' => 'sun', 'Hund09381' => 'sun', 'Hund09832' => 'sun', 'Hund09833' => 'sun', 'Hund11351' => 'sun', 'Hund11513' => 'sun', 'Lalb_Chr06g0162591' => 'lal', 'Lalb_Chr06g0162601' => 'lal', 'Lalb_Chr06g0169321' => 'lal', 'Lalb_Chr09g0330951' => 'lal', 'Lalb_Chr16g0387631' => 'lal', 'Lalb_Chr21g0306241' => 'lal', 'Lalb_Chr25g0290051' => 'lal', 'Lalb_Chr25g0290061' => 'lal', 'Lalb_Chr25g0290071' => 'lal', 'Lj1g0003876' => 'lja', 'Lj1P1207T36' => 'lonja', 'Lj2C1156G12' => 'lonja', 'Lj3A793G39' => 'lonja', 'Lj3C580G2' => 'lonja', 'Lj3C780G2' => 'lonja', 'Lj3C780T4' => 'lonja', 'Lj3C793G9' => 'lonja', 'Lj4g0012960' => 'lja', 'Lj5g0021252' => 'lja', 'Lj5g0021484' => 'lja', 'Lj5g0024528' => 'lja', 'Lj6A399T12' => 'lonja', 'Lj6A656G65' => 'lonja', 'Lsat_1_v5_gn_3_125500' => 'lsa', 'Lsat_1_v5_gn_3_125540' => 'lsa', 'Lsat_1_v5_gn_5_72701' => 'lsa', 'Lsat_1_v5_gn_8_91560' => 'lsa', 'Lsat_1_v5_gn_9_9640' => 'lsa', 'Manes.01G200600' => 'mes', 'Manes.01G200700' => 'mes', 'Manes.03G168900' => 'mes', 'Manes.03G169000' => 'mes', 'Manes.05G085801' => 'mes', 'Manes.05G086200' => 'mes', 'Manes.15G036700' => 'mes', 'Manes.15G036900' => 'mes', 'Mapoly0004s0172' => 'mpo', 'Mapoly0023s0001' => 'mpo', 'Mapoly0142s0012' => 'mpo', 'MBI01_g32854_MAGBIO' => 'mbi', 'MBI11_g24427_MAGBIO' => 'mbi', 'MBI11_g47319_MAGBIO' => 'mbi', 'MCO01G433' => 'mco', 'MD00G1187800' => 'mdo', 'MD04G1226500' => 'mdo', 'MD05G1203900' => 'mdo', 'MD10G1191100' => 'mdo', 'MD12G1243500' => 'mdo', 'MD13G1207000' => 'mdo', 'MD13G1207100' => 'mdo', 'MD16G1208600' => 'mdo', 'Medtr1g050352' => 'mtr', 'Medtr1g070385' => 'mtr', 'Medtr1g070450' => 'mtr', 'Medtr1g075200' => 'mtr', 'Medtr1g075250' => 'mtr', 'Medtr1g075260' => 'mtr', 'Medtr1g475250' => 'mtr', 'Medtr4g075450' => 'mtr', 'Medtr7g096300' => 'mtr', 'Medtr8g105110' => 'mtr', 'MELO3C006470.2' => 'cme', 'MELO3C006471.2' => 'cme', 'MELO3C020772.2' => 'cme', 'MELO3C026780.2' => 'cme', 'MELO3C026781.2' => 'cme', 'Migut.D00390' => 'egut', 'Migut.G00435' => 'egut', 'Migut.G00436' => 'egut', 'Migut.G00718' => 'egut', 'MSTRG.21891' => 'ama', 'MSTRG.26910' => 'ama', 'MSTRG.4099' => 'ama', 'MSTRG.9925' => 'ama', 'Nitab4.5_0000165g0010' => 'nta', 'Nitab4.5_0000209g0180' => 'nta', 'Nitab4.5_0000244g0440' => 'nta', 'Nitab4.5_0000525g0220' => 'nta', 'Nitab4.5_0001597g0020' => 'nta', 'Nitab4.5_0001878g0040' => 'nta', 'Nitab4.5_0001878g0060' => 'nta', 'Nitab4.5_0002838g0100' => 'nta', 'Nitab4.5_0002838g0120' => 'nta', 'Nitab4.5_0004798g0030' => 'nta', 'Nitab4.5_0005420g0010' => 'nta', 'Nitab4.5_0005507g0010' => 'nta', 'Nitab4.5_0005574g0020' => 'nta', 'Nitab4.5_0005838g0010' => 'nta', 'Nitab4.5_0010580g0020' => 'nta', 'Nn1g02599' => 'nnu', 'Nn1g02608' => 'nnu', 'Nn3g17742' => 'nnu', 'Nn3g19534' => 'nnu', 'Nn3g19535' => 'nnu', 'Oeu008790.1' => 'oeu', 'Oeu008792.1' => 'oeu', 'Oeu032590.1' => 'oeu', 'Oeu035349.1' => 'oeu', 'Oeu049791.1' => 'oeu', 'Os01g0774500' => 'osa', 'Os03g0628800' => 'osa', 'Os03g0798600' => 'osa', 'Os05g0508800' => 'osa', 'Peaxi162Scf00036g02018' => 'pax', 'Peaxi162Scf00578g00032' => 'pax', 'Peaxi162Scf00578g00317' => 'pax', 'Peaxi162Scf00785g00114' => 'pax', 'Peaxi162Scf00813g00119' => 'pax', 'Peaxi162Scf00906g00227' => 'pax', 'PGR004G0875' => 'pgr', 'PGR004G2424' => 'pgr', 'PGR031G1239' => 'pgr', 'PGR031G2474' => 'pgr', 'PGR044G0423' => 'pgr', 'PGSC0003DMG400001128' => 'stu', 'PGSC0003DMG400007336' => 'stu', 'PGSC0003DMG400016318' => 'stu', 'PGSC0003DMG400016319' => 'stu', 'PGSC0003DMG400018074' => 'stu', 'Phvul.001G157700' => 'pvu', 'Phvul.002G148550' => 'pvu', 'Phvul.002G320200' => 'pvu', 'Phvul.003G089200' => 'pvu', 'Phvul.007G126000' => 'pvu', 'Phvul.007G126100' => 'pvu', 'Phvul.007G178000' => 'pvu', 'Phvul.007G178200' => 'pvu', 'Potri.002G043000' => 'ptr', 'Potri.002G043200' => 'ptr', 'Potri.003G123750' => 'ptr', 'Potri.005G055401' => 'ptr', 'Potri.005G219700' => 'ptr', 'Potri.005G220000' => 'ptr', 'Potri.008G161901' => 'ptr', 'Potri.008G162000' => 'ptr', 'Potri.008G162400' => 'ptr', 'Potri.010G076900' => 'ptr', 'Pp3c12_9180' => 'ppa', 'Pp3c13_19770' => 'ppa', 'Pp3c14_22950' => 'ppa', 'Pp3c16_12160' => 'ppa', 'Pp3c27_7820' => 'ppa', 'Pp3c2_3490' => 'ppa', 'Pp3c3_23700' => 'ppa', 'Pp3c3_36520' => 'ppa', 'Pp3c4_15250' => 'ppa', 'PRCOL_00007002' => 'pco', 'Prupe.1G030600' => 'ppe', 'Prupe.1G030700' => 'ppe', 'Prupe.6G345200' => 'ppe', 'Prupe.8G230300' => 'ppe', 'Prupe.8G230500' => 'ppe', 'Psat3g059600' => 'psa', 'Psat5g200920' => 'psa', 'Psat6g056440' => 'psa', 'Psat6g057360' => 'psa', 'Psat6g134120' => 'psa', 'Psat6g134160' => 'psa', 'Psat7g008640' => 'psa', 'Psat7g185240' => 'psa', 'PSO017G1330' => 'pso', 'PSO063G6097' => 'pso', 'PSO170G0835' => 'pso', 'PSO170G2499' => 'pso', 'PSO210G5058' => 'pso', 'PSO210G6154' => 'pso', 'PSO585G0031' => 'pso', 'PSO832G0264' => 'pso', 'PSO832G4288' => 'pso', 'QL03p027355' => 'qlo', 'QL03p027430' => 'qlo', 'QL04p081380' => 'qlo', 'QL06p015642' => 'qlo', 'QL06p015650' => 'qlo', 'QL06p015686' => 'qlo', 'QL12p042927' => 'qlo', 'QL93p1863_0035' => 'qlo', 'RcHm_v2.0_Chr3g0450581' => 'rch', 'RcHm_v2.0_Chr4g0390371' => 'rch', 'RcHm_v2.0_Chr4g0390381' => 'rch', 'RcHm_v2.0_Chr4g0390491' => 'rch', 'RcHm_v2.0_Chr4g0390501' => 'rch', 'RcHm_v2.0_Chr6g0289231' => 'rch', 'Rhsim04G0190400' => 'rsi', 'Rhsim04G0190500' => 'rsi', 'Rhsim04G0190600' => 'rsi', 'Rhsim13G0031400' => 'rsi', 'Rhsim13G0165600' => 'rsi', 'RhsimUnG0114600' => 'rsi', 'RhsimUnG0114700' => 'rsi', 'Sabra02G0034800' => 'sbr', 'Sabra02G0035100' => 'sbr', 'Sabra05G0168600' => 'sbr', 'Sabra05G0168800' => 'sbr', 'Sabra08G0123700' => 'sbr', 'Sabra10G0031900' => 'sbr', 'Sabra13G0039000' => 'sbr', 'SalBow2G0782' => 'sbo', 'SalBow2G1403' => 'sbo', 'SalBow4G0074' => 'sbo', 'SalBow4G2635' => 'sbo', 'SalBow5G3010' => 'sbo', 'Sc05g0000870' => 'sci', 'Sc05g0000890' => 'sci', 'Sc13g0005000' => 'sci', 'Sc13g0005030' => 'sci', 'Sc19g0003790' => 'sci', 'Sc19g0003800' => 'sci', 'Sed0003467' => 'sed', 'Sed0009355' => 'sed', 'Sed0009894' => 'sed', 'Sed0011972' => 'sed', 'Sed0021483' => 'sed', 'Sed0021750' => 'sed', 'Sed0026279' => 'sed', 'SEGI_05312' => 'sgi', 'SEGI_10112' => 'sgi', 'SEGI_15835' => 'sgi', 'SEGI_30386' => 'sgi', 'SEGI_34122' => 'sgi', 'SEGI_35063' => 'sgi', 'SGA_v2.0_scaffold101G29794' => 'sas', 'SGA_v2.0_scaffold1G00573' => 'sas', 'SGA_v2.0_scaffold79G25637' => 'sas', 'SGA_v2.0_scaffold88G27283' => 'sas', 'SGA_v2.0_scaffold88G27285' => 'sas', 'SGA_v2.0_scaffold88G27331' => 'sas', 'SHI09937' => 'shi', 'SMO119G0302' => 'smo', 'SMO137G0231' => 'smo', 'SMO367G1151' => 'smo', 'Solyc02g082000.3' => 'sly', 'Solyc06g031670.3' => 'sly', 'Solyc06g053810.3' => 'sly', 'Solyc07g025457.1' => 'sly', 'Solyc08g059740.1' => 'sly', 'Solyc08g059750.3' => 'sly', 'Solyc09g083370.3' => 'sly', 'Solyc12g038950.3' => 'sly', 'Sopen02g026630' => 'spe', 'Sopen06g018930' => 'spe', 'Sopen06g018940' => 'spe', 'Sopen08g009460' => 'spe', 'Sopen09g032290' => 'spe', 'Sp1g03080' => 'spa', 'Sp1g03090' => 'spa', 'Sp1g05480' => 'spa', 'Sp2g07860' => 'spa', 'Sp2g08430' => 'spa', 'Sp2g08440' => 'spa', 'Sp2g26200' => 'spa', 'Sp4g13170' => 'spa', 'Sp6g33840' => 'spa', 'SpUn1204_0010' => 'spa', 'TAR365G0908' => 'tar', 'TAR381G1270' => 'tar', 'TAR381G1651' => 'tar', 'TAR625G1131' => 'tar', 'TAR633G0962' => 'tar', 'TAR633G1729' => 'tar', 'TAR633G1864' => 'tar', 'TAR636G0221' => 'tar', 'TAR636G0314' => 'tar', 'TAR636G3202' => 'tar', 'THA.LOC104800805' => 'tha', 'THA.LOC104801096' => 'tha', 'THA.LOC104801555' => 'tha', 'THA.LOC104808491' => 'tha', 'THA.LOC104808595' => 'tha', 'THA.LOC104815985' => 'tha', 'THA.LOC104822250' => 'tha', 'THA.LOC104826071' => 'tha', 'Thecc.01G265200' => 'tca', 'Thecc.01G265300' => 'tca', 'Thecc.01G265700' => 'tca', 'Thecc.03G109100' => 'tca', 'Thecc.04G245900' => 'tca', 'Thecc.04G246000' => 'tca', 'Thhalv10003334m.g' => 'esa', 'Thhalv10005508m.g' => 'esa', 'Thhalv10005643m.g' => 'esa', 'Thhalv10007316m.g' => 'esa', 'Thhalv10009006m.g' => 'esa', 'Thhalv10009309m.g' => 'esa', 'Thhalv10014917m.g' => 'esa', 'Thhalv10014919m.g' => 'esa', 'Thhalv10015393m.g' => 'esa', 'Thhalv10016515m.g' => 'esa', 'Thhalv10029242m.g' => 'esa', 'TPR.G16654' => 'tpr', 'TPR.G20589' => 'tpr', 'TPR.G23029' => 'tpr', 'TPR.G27731' => 'tpr', 'TPR.G28889' => 'tpr', 'TPR.G28899' => 'tpr', 'TPR.G30846' => 'tpr', 'TPR.G5452' => 'tpr', 'TPR.G5713' => 'tpr', 'TPR.G9046' => 'tpr', 'TPR.G9061' => 'tpr', 'TWI09G1075' => 'twi', 'TWI12G0806' => 'twi', 'TWI18G0108' => 'twi', 'TWI53G1361' => 'twi', 'TWI73G0185' => 'twi', 'TWI73G0427' => 'twi', 'unitig_37.g12001' => 'ugi', 'unitig_747.g21660' => 'ugi', 'unitig_748.g7232' => 'ugi', 'unitig_748.g7315' => 'ugi', 'unitig_85.g27262' => 'ugi', 'unitig_92.g28220' => 'ugi', 'vmacro02632' => 'vma', 'vmacro08410' => 'vma', 'vmacro08411' => 'vma', 'vmacro15407' => 'vma', 'VMungo0251G3619' => 'vmu', 'VMungo0720G1204' => 'vmu', 'VMungo0720G1918' => 'vmu', 'VMungo0720G2387' => 'vmu', 'VMungo0720G2961' => 'vmu', 'VMungo1215G2154' => 'vmu', 'VMungo1383G2411' => 'vmu', 'Zm00001eb051130' => 'zma', 'Zm00001eb116830' => 'zma', 'Zm00001eb116850' => 'zma', 'Zm00001eb151740' => 'zma', 'Zm00001eb292360' => 'zma', 'Zm00001eb301640' => 'zma' ) $gf_id = 'HOM05D000856' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000856' ) $data_identifier = 'HOM05D000856' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 13, 'ath' => (int) 10, 'atr' => (int) 1, 'acertr' => (int) 8, 'cqu' => (int) 6, 'bca' => (int) 21, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 11, 'car' => (int) 9, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 8, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 5, 'fan' => (int) 16, 'fve' => (int) 6, 'gma' => (int) 11, 'ghi' => (int) 19, 'gra' => (int) 9, 'vvi' => (int) 7, 'han' => (int) 17, 'cav' => (int) 5, 'hma' => (int) 2, 'vpl' => (int) 2, 'sun' => (int) 7, 'lal' => (int) 9, 'lja' => (int) 5, 'lonja' => (int) 9, 'lsa' => (int) 5, 'mes' => (int) 8, 'mpo' => (int) 3, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 10, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 15, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 9, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 9, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 6, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 5, 'spa' => (int) 10, 'tar' => (int) 10, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 11, 'tpr' => (int) 11, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 4, 'vmu' => (int) 7, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb301640' $species_info = array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ) $local_species = 'ccan' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000856', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p00010' => 'bna', 'A03p04160' => 'bna', 'A03p17160' => 'bna', 'A04p23370' => 'bna', 'A05p14860' => 'bna', 'A08p37020' => 'bna', 'A09p08050' => 'bna', 'A09p66800' => 'bna', 'A09p67940' => 'bna', 'A10p02680' => 'bna', 'A10p05320' => 'bna', 'Aa31LG1G20560' => 'aar', 'Aa31LG1G20610' => 'aar', 'Aa31LG1G7810' => 'aar', 'Aa31LG5G3590' => 'aar', 'Aa31LG5G6140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3819' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4683' => 'aag', 'Actinidia04480' => 'ach', 'Actinidia05466' => 'ach', 'Actinidia08445' => 'ach', 'Actinidia21170' => 'ach', 'Actinidia24812' => 'ach', 'Actinidia24951' => 'ach', 'Actinidia40088' => 'ach', 'Ah.02g111660' => 'amhyb', 'Ah.11g048900' => 'amhyb', 'Ah.11g049910' => 'amhyb', 'AL1G13870' => 'aly', 'AL1G13880' => 'aly', 'AL1G16760' => 'aly', 'AL390U10020' => 'aly', 'AL4G25520' => 'aly', 'AL6G19890' => 'aly', 'AL6G19900' => 'aly', 'AL6G19910' => 'aly', 'AL8G40100' => 'aly', 'Aqoxy2G03562' => 'aox', 'Aqoxy5G00316' => 'aox', 'Aqoxy5G00926' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1628KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1H403S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2FU6SJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.882I6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8YRY2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YN1SN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AF70II' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZA8L1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F916KL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHRD8H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KTZ8QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S22EMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8M29T' => 'arhy', 'AT1G04270' => 'ath', 'AT1G04280' => 'ath', 'AT1G06750' => 'ath', 'AT1G33850' => 'ath', 'AT2G30630' => 'ath', 'AT5G09490' => 'ath', 'AT5G09500' => 'ath', 'AT5G09510' => 'ath', 'AT5G43640' => 'ath', 'AT5G63070' => 'ath', 'ATR0605G315' => 'atr', 'Atru.chr11.175' => 'acertr', 'Atru.chr11.653' => 'acertr', 'Atru.chr3.1616' => 'acertr', 'Atru.chr4.2230' => 'acertr', 'Atru.chr4.2232' => 'acertr', 'Atru.chr5.1598' => 'acertr', 'Atru.chr5.1600' => 'acertr', 'Atru.chr5.2188' => 'acertr', 'AUR62008326' => 'cqu', 'AUR62011922' => 'cqu', 'AUR62011924' => 'cqu', 'AUR62021771' => 'cqu', 'AUR62032237' => 'cqu', 'AUR62032240' => 'cqu', 'BcaB01g05572' => 'bca', 'BcaB02g10337' => 'bca', 'BcaB04g19944' => 'bca', 'BcaB05g21548' => 'bca', 'BcaB05g21549' => 'bca', 'BcaB05g23227' => 'bca', 'BcaB06g26256' => 'bca', 'BcaB06g26257' => 'bca', 'BcaB06g28379' => 'bca', 'BcaC02g11159' => 'bca', 'BcaC03g13258' => 'bca', 'BcaC03g13259' => 'bca', 'BcaC05g24456' => 'bca', 'BcaC05g24457' => 'bca', 'BcaC07g36922' => 'bca', 'BcaC07g36923' => 'bca', 'BcaC07g42050' => 'bca', 'BcaC07g42176' => 'bca', 'BcaC07g42195' => 'bca', 'BcaC07g42196' => 'bca', 'BcaNung06674' => 'bca', 'BolC2t06351H' => 'bol', 'BolC2t06352H' => 'bol', 'BolC3t12993H' => 'bol', 'BolC4t23525H' => 'bol', 'BolC4t27475H' => 'bol', 'BolC5t29025H' => 'bol', 'BolC5t29026H' => 'bol', 'BolC8t46898H' => 'bol', 'BolC8t46899H' => 'bol', 'BolC8t52630H' => 'bol', 'BolC8t52765H' => 'bol', 'BolC9t53824H' => 'bol', 'BraA03t09760Z' => 'bra', 'BraA03t10990Z' => 'bra', 'BraA05t20413Z' => 'bra', 'BraA08t35602Z' => 'bra', 'BraA09t36458Z' => 'bra', 'BraA09t42018Z' => 'bra', 'BraA09t42129Z' => 'bra', 'BraA10t42536Z' => 'bra', 'BraA10t42537Z' => 'bra', 'C01p10690' => 'bna', 'C02p03890' => 'bna', 'C02p03900' => 'bna', 'C03p04620' => 'bna', 'C04p19870' => 'bna', 'C04p59670' => 'bna', 'C05p02460' => 'bna', 'C05p02470' => 'bna', 'C08p00980' => 'bna', 'C08p00990' => 'bna', 'C08p51030' => 'bna', 'C08p52360' => 'bna', 'C09p09120' => 'bna', 'CAN.G19.15' => 'can', 'CAN.G251.10' => 'can', 'CAN.G251.9' => 'can', 'CAN.G398.24' => 'can', 'CAN.G410.32' => 'can', 'CAN.G881.2' => 'can', 'CANSAT01G3025' => 'cansat', 'CANSAT78G1211' => 'cansat', 'CANSAT78G1218' => 'cansat', 'CANSAT78G1521' => 'cansat', 'CANSAT78G1670' => 'cansat', 'CARHR003600' => 'chi', 'CARHR003610' => 'chi', 'CARHR006290' => 'chi', 'CARHR006430' => 'chi', 'CARHR124110' => 'chi', 'CARHR203870' => 'chi', 'CARHR203880' => 'chi', 'CARHR203890' => 'chi', 'CARHR276880' => 'chi', 'Carub.0001s0346' => 'cru', 'Carub.0001s0347' => 'cru', 'Carub.0001s0607' => 'cru', 'Carub.0003s2768' => 'cru', 'Carub.0003s2769' => 'cru', 'Carub.0004s1178' => 'cru', 'Carub.0006s0806' => 'cru', 'Carub.0006s0807' => 'cru', 'Carub.0006s0808' => 'cru', 'Carub.0008s0501' => 'cru', 'Carub.0008s2379' => 'cru', 'Ca_08655_v3' => 'car', 'Ca_08922_v3' => 'car', 'Ca_08923_v3' => 'car', 'Ca_09119_v3' => 'car', 'Ca_09703_v3' => 'car', 'Ca_09705_v3' => 'car', 'Ca_09835_v3' => 'car', 'Ca_26403_v3' => 'car', 'Ca_30719_v3' => 'car', 'CBR_g17958' => 'cbr', 'CBR_g40516' => 'cbr', 'Cc00_g05350' => 'ccan', 'Cc01_g18690' => 'ccan', 'Cc03_g04830' => 'ccan', 'Cc03_g04850' => 'ccan', 'CDE02G4469' => 'cde', 'CDE06G0883' => 'cde', 'CDE06G1295' => 'cde', 'CDE06G1390' => 'cde', 'CDE07G0584' => 'cde', 'CDE07G1084' => 'cde', 'CDE08G1259' => 'cde', 'Cfa002341' => 'cfa', 'Cfa024337' => 'cfa', 'Ciclev10004749m.g' => 'ccl', 'Ciclev10006127m.g' => 'ccl', 'Ciclev10019720m.g' => 'ccl', 'Ciclev10022652m.g' => 'ccl', 'CiPaw.01G190400' => 'cil', 'CiPaw.01G190500' => 'cil', 'CiPaw.02G116400' => 'cil', 'CiPaw.02G116500' => 'cil', 'CiPaw.04G183000' => 'cil', 'CiPaw.04G183300' => 'cil', 'ClCG05G004610' => 'cla', 'ClCG05G004620' => 'cla', 'ClCG06G006730' => 'cla', 'ClCG06G006740' => 'cla', 'ClCG11G003690' => 'cla', 'COL.COLO4_08276' => 'col', 'COL.COLO4_08277' => 'col', 'COL.COLO4_15787' => 'col', 'COL.COLO4_15789' => 'col', 'Cpa.g.c44815' => 'cpa', 'Cpa.g.sc52.144' => 'cpa', 'Cpa.g.sc58.46' => 'cpa', 'Cpa.g.sc58.47' => 'cpa', 'Cre08.g360900' => 'cre', 'CsaV3_2G013030' => 'csa', 'CsaV3_2G013050' => 'csa', 'CsaV3_2G015620' => 'csa', 'CsaV3_3G012590' => 'csa', 'CsaV3_3G012600' => 'csa', 'CSS0001641' => 'camsi', 'CSS0008310' => 'camsi', 'CSS0013011' => 'camsi', 'CSS0017147' => 'camsi', 'CSS0022970' => 'camsi', 'CSS0025655' => 'camsi', 'CSS0028665' => 'camsi', 'CSS0029117' => 'camsi', 'CSS0032024' => 'camsi', 'CSS0039681' => 'camsi', 'CSS0046516' => 'camsi', 'CSS0050307' => 'camsi', 'DCAR_005871' => 'dca', 'DCAR_007342' => 'dca', 'DCAR_024228' => 'dca', 'DCAR_027277' => 'dca', 'DCAR_030718' => 'dca', 'Dinv20287' => 'din', 'Dinv22461' => 'din', 'Dinv22464' => 'din', 'Dinv29912' => 'din', 'Dinv29913' => 'din', 'Dinv34580' => 'din', 'Dinv34582' => 'din', 'Dinv44632' => 'din', 'Duzib052G0266' => 'dzi', 'Duzib133G0907' => 'dzi', 'Duzib133G1034' => 'dzi', 'Duzib138G0207' => 'dzi', 'Duzib138G0491' => 'dzi', 'Duzib151G0812' => 'dzi', 'Duzib151G1166' => 'dzi', 'Duzib168G0192' => 'dzi', 'Duzib211G0077' => 'dzi', 'Duzib212G0429' => 'dzi', 'Duzib212G0472' => 'dzi', 'ECA233G2617' => 'eca', 'ECA236G4188' => 'eca', 'ECA240G0936' => 'eca', 'ECA240G1129' => 'eca', 'ECA247G0623' => 'eca', 'EL10Ac5g10451' => 'bvu', 'EL10Ac5g10453' => 'bvu', 'EL10Ac5g10894' => 'bvu', 'Eucgr.H00192' => 'egr', 'Eucgr.H00193' => 'egr', 'Eucgr.H00194' => 'egr', 'Eucgr.J01562' => 'egr', 'Eucgr.K03301' => 'egr', 'FAN02G0632' => 'fan', 'FAN05G5378' => 'fan', 'FAN09G3247' => 'fan', 'FAN12G0435' => 'fan', 'FAN12G2426' => 'fan', 'FAN14G1707' => 'fan', 'FAN14G4725' => 'fan', 'FAN15G2071' => 'fan', 'FAN17G3065' => 'fan', 'FAN19G1376' => 'fan', 'FAN20G0354' => 'fan', 'FAN20G2429' => 'fan', 'FAN20G2658' => 'fan', 'FAN24G2343' => 'fan', 'FAN27G2362' => 'fan', 'FAN28G1765' => 'fan', 'FvH4_1g16020' => 'fve', 'FvH4_2g04890' => 'fve', 'FvH4_2g22270' => 'fve', 'FvH4_4g02630' => 'fve', 'FvH4_4g02640' => 'fve', 'FvH4_6g02650' => 'fve', 'Glyma.02G140600' => 'gma', 'Glyma.03G159900' => 'gma', 'Glyma.05G234800' => 'gma', 'Glyma.07G269600' => 'gma', 'Glyma.08G042300' => 'gma', 'Glyma.10G033500' => 'gma', 'Glyma.10G185200' => 'gma', 'Glyma.17G004300' => 'gma', 'Glyma.19G161900' => 'gma', 'Glyma.20G205100' => 'gma', 'Glyma.20G205200' => 'gma', 'Gohir.A01G139101' => 'ghi', 'Gohir.A02G035600' => 'ghi', 'Gohir.A02G117901' => 'ghi', 'Gohir.A07G210100' => 'ghi', 'Gohir.A07G210200' => 'ghi', 'Gohir.A08G061100' => 'ghi', 'Gohir.A09G223000' => 'ghi', 'Gohir.A09G223100' => 'ghi', 'Gohir.A10G113900' => 'ghi', 'Gohir.A10G114000' => 'ghi', 'Gohir.D02G042300' => 'ghi', 'Gohir.D07G216100' => 'ghi', 'Gohir.D07G216200' => 'ghi', 'Gohir.D08G070400' => 'ghi', 'Gohir.D09G225000' => 'ghi', 'Gohir.D09G225100' => 'ghi', 'Gohir.D10G152300' => 'ghi', 'Gohir.D10G153200' => 'ghi', 'Gohir.D11G133701' => 'ghi', 'Gorai.004G074100' => 'gra', 'Gorai.005G046800' => 'gra', 'Gorai.006G246500' => 'gra', 'Gorai.006G246600' => 'gra', 'Gorai.007G142900' => 'gra', 'Gorai.011G171000' => 'gra', 'Gorai.011G171100' => 'gra', 'Gorai.013G104300' => 'gra', 'Gorai.013G104400' => 'gra', 'GSVIVG01000754001' => 'vvi', 'GSVIVG01000756001' => 'vvi', 'GSVIVG01010903001' => 'vvi', 'GSVIVG01017623001' => 'vvi', 'GSVIVG01018113001' => 'vvi', 'GSVIVG01018116001' => 'vvi', 'GSVIVG01018118001' => 'vvi', 'HanXRQChr03g0076211' => 'han', 'HanXRQChr03g0092431' => 'han', 'HanXRQChr03g0092441' => 'han', 'HanXRQChr03g0092591' => 'han', 'HanXRQChr03g0092671' => 'han', 'HanXRQChr03g0092681' => 'han', 'HanXRQChr03g0092691' => 'han', 'HanXRQChr03g0092701' => 'han', 'HanXRQChr03g0092721' => 'han', 'HanXRQChr03g0092731' => 'han', 'HanXRQChr04g0113681' => 'han', 'HanXRQChr10g0281371' => 'han', 'HanXRQChr11g0337141' => 'han', 'HanXRQChr13g0424521' => 'han', 'HanXRQChr13g0424531' => 'han', 'HanXRQChr13g0424541' => 'han', 'HanXRQChr16g0498221' => 'han', 'Haze_04377' => 'cav', 'Haze_11298' => 'cav', 'Haze_24547' => 'cav', 'Haze_24550' => 'cav', 'Haze_26587' => 'cav', 'Hma1.2p1_0650F.1_g195410' => 'hma', 'Hma1.2p1_0893F.1_g233470' => 'hma', 'HPP92_006508' => 'vpl', 'HPP92_024780' => 'vpl', 'Hund02688' => 'sun', 'Hund09380' => 'sun', 'Hund09381' => 'sun', 'Hund09832' => 'sun', 'Hund09833' => 'sun', 'Hund11351' => 'sun', 'Hund11513' => 'sun', 'Lalb_Chr06g0162591' => 'lal', 'Lalb_Chr06g0162601' => 'lal', 'Lalb_Chr06g0169321' => 'lal', 'Lalb_Chr09g0330951' => 'lal', 'Lalb_Chr16g0387631' => 'lal', 'Lalb_Chr21g0306241' => 'lal', 'Lalb_Chr25g0290051' => 'lal', 'Lalb_Chr25g0290061' => 'lal', 'Lalb_Chr25g0290071' => 'lal', 'Lj1g0003876' => 'lja', 'Lj1P1207T36' => 'lonja', 'Lj2C1156G12' => 'lonja', 'Lj3A793G39' => 'lonja', 'Lj3C580G2' => 'lonja', 'Lj3C780G2' => 'lonja', 'Lj3C780T4' => 'lonja', 'Lj3C793G9' => 'lonja', 'Lj4g0012960' => 'lja', 'Lj5g0021252' => 'lja', 'Lj5g0021484' => 'lja', 'Lj5g0024528' => 'lja', 'Lj6A399T12' => 'lonja', 'Lj6A656G65' => 'lonja', 'Lsat_1_v5_gn_3_125500' => 'lsa', 'Lsat_1_v5_gn_3_125540' => 'lsa', 'Lsat_1_v5_gn_5_72701' => 'lsa', 'Lsat_1_v5_gn_8_91560' => 'lsa', 'Lsat_1_v5_gn_9_9640' => 'lsa', 'Manes.01G200600' => 'mes', 'Manes.01G200700' => 'mes', 'Manes.03G168900' => 'mes', 'Manes.03G169000' => 'mes', 'Manes.05G085801' => 'mes', 'Manes.05G086200' => 'mes', 'Manes.15G036700' => 'mes', 'Manes.15G036900' => 'mes', 'Mapoly0004s0172' => 'mpo', 'Mapoly0023s0001' => 'mpo', 'Mapoly0142s0012' => 'mpo', 'MBI01_g32854_MAGBIO' => 'mbi', 'MBI11_g24427_MAGBIO' => 'mbi', 'MBI11_g47319_MAGBIO' => 'mbi', 'MCO01G433' => 'mco', 'MD00G1187800' => 'mdo', 'MD04G1226500' => 'mdo', 'MD05G1203900' => 'mdo', 'MD10G1191100' => 'mdo', 'MD12G1243500' => 'mdo', 'MD13G1207000' => 'mdo', 'MD13G1207100' => 'mdo', 'MD16G1208600' => 'mdo', 'Medtr1g050352' => 'mtr', 'Medtr1g070385' => 'mtr', 'Medtr1g070450' => 'mtr', 'Medtr1g075200' => 'mtr', 'Medtr1g075250' => 'mtr', 'Medtr1g075260' => 'mtr', 'Medtr1g475250' => 'mtr', 'Medtr4g075450' => 'mtr', 'Medtr7g096300' => 'mtr', 'Medtr8g105110' => 'mtr', 'MELO3C006470.2' => 'cme', 'MELO3C006471.2' => 'cme', 'MELO3C020772.2' => 'cme', 'MELO3C026780.2' => 'cme', 'MELO3C026781.2' => 'cme', 'Migut.D00390' => 'egut', 'Migut.G00435' => 'egut', 'Migut.G00436' => 'egut', 'Migut.G00718' => 'egut', 'MSTRG.21891' => 'ama', 'MSTRG.26910' => 'ama', 'MSTRG.4099' => 'ama', 'MSTRG.9925' => 'ama', 'Nitab4.5_0000165g0010' => 'nta', 'Nitab4.5_0000209g0180' => 'nta', 'Nitab4.5_0000244g0440' => 'nta', 'Nitab4.5_0000525g0220' => 'nta', 'Nitab4.5_0001597g0020' => 'nta', 'Nitab4.5_0001878g0040' => 'nta', 'Nitab4.5_0001878g0060' => 'nta', 'Nitab4.5_0002838g0100' => 'nta', 'Nitab4.5_0002838g0120' => 'nta', 'Nitab4.5_0004798g0030' => 'nta', 'Nitab4.5_0005420g0010' => 'nta', 'Nitab4.5_0005507g0010' => 'nta', 'Nitab4.5_0005574g0020' => 'nta', 'Nitab4.5_0005838g0010' => 'nta', 'Nitab4.5_0010580g0020' => 'nta', 'Nn1g02599' => 'nnu', 'Nn1g02608' => 'nnu', 'Nn3g17742' => 'nnu', 'Nn3g19534' => 'nnu', 'Nn3g19535' => 'nnu', 'Oeu008790.1' => 'oeu', 'Oeu008792.1' => 'oeu', 'Oeu032590.1' => 'oeu', 'Oeu035349.1' => 'oeu', 'Oeu049791.1' => 'oeu', 'Os01g0774500' => 'osa', 'Os03g0628800' => 'osa', 'Os03g0798600' => 'osa', 'Os05g0508800' => 'osa', 'Peaxi162Scf00036g02018' => 'pax', 'Peaxi162Scf00578g00032' => 'pax', 'Peaxi162Scf00578g00317' => 'pax', 'Peaxi162Scf00785g00114' => 'pax', 'Peaxi162Scf00813g00119' => 'pax', 'Peaxi162Scf00906g00227' => 'pax', 'PGR004G0875' => 'pgr', 'PGR004G2424' => 'pgr', 'PGR031G1239' => 'pgr', 'PGR031G2474' => 'pgr', 'PGR044G0423' => 'pgr', 'PGSC0003DMG400001128' => 'stu', 'PGSC0003DMG400007336' => 'stu', 'PGSC0003DMG400016318' => 'stu', 'PGSC0003DMG400016319' => 'stu', 'PGSC0003DMG400018074' => 'stu', 'Phvul.001G157700' => 'pvu', 'Phvul.002G148550' => 'pvu', 'Phvul.002G320200' => 'pvu', 'Phvul.003G089200' => 'pvu', 'Phvul.007G126000' => 'pvu', 'Phvul.007G126100' => 'pvu', 'Phvul.007G178000' => 'pvu', 'Phvul.007G178200' => 'pvu', 'Potri.002G043000' => 'ptr', 'Potri.002G043200' => 'ptr', 'Potri.003G123750' => 'ptr', 'Potri.005G055401' => 'ptr', 'Potri.005G219700' => 'ptr', 'Potri.005G220000' => 'ptr', 'Potri.008G161901' => 'ptr', 'Potri.008G162000' => 'ptr', 'Potri.008G162400' => 'ptr', 'Potri.010G076900' => 'ptr', 'Pp3c12_9180' => 'ppa', 'Pp3c13_19770' => 'ppa', 'Pp3c14_22950' => 'ppa', 'Pp3c16_12160' => 'ppa', 'Pp3c27_7820' => 'ppa', 'Pp3c2_3490' => 'ppa', 'Pp3c3_23700' => 'ppa', 'Pp3c3_36520' => 'ppa', 'Pp3c4_15250' => 'ppa', 'PRCOL_00007002' => 'pco', 'Prupe.1G030600' => 'ppe', 'Prupe.1G030700' => 'ppe', 'Prupe.6G345200' => 'ppe', 'Prupe.8G230300' => 'ppe', 'Prupe.8G230500' => 'ppe', 'Psat3g059600' => 'psa', 'Psat5g200920' => 'psa', 'Psat6g056440' => 'psa', 'Psat6g057360' => 'psa', 'Psat6g134120' => 'psa', 'Psat6g134160' => 'psa', 'Psat7g008640' => 'psa', 'Psat7g185240' => 'psa', 'PSO017G1330' => 'pso', 'PSO063G6097' => 'pso', 'PSO170G0835' => 'pso', 'PSO170G2499' => 'pso', 'PSO210G5058' => 'pso', 'PSO210G6154' => 'pso', 'PSO585G0031' => 'pso', 'PSO832G0264' => 'pso', 'PSO832G4288' => 'pso', 'QL03p027355' => 'qlo', 'QL03p027430' => 'qlo', 'QL04p081380' => 'qlo', 'QL06p015642' => 'qlo', 'QL06p015650' => 'qlo', 'QL06p015686' => 'qlo', 'QL12p042927' => 'qlo', 'QL93p1863_0035' => 'qlo', 'RcHm_v2.0_Chr3g0450581' => 'rch', 'RcHm_v2.0_Chr4g0390371' => 'rch', 'RcHm_v2.0_Chr4g0390381' => 'rch', 'RcHm_v2.0_Chr4g0390491' => 'rch', 'RcHm_v2.0_Chr4g0390501' => 'rch', 'RcHm_v2.0_Chr6g0289231' => 'rch', 'Rhsim04G0190400' => 'rsi', 'Rhsim04G0190500' => 'rsi', 'Rhsim04G0190600' => 'rsi', 'Rhsim13G0031400' => 'rsi', 'Rhsim13G0165600' => 'rsi', 'RhsimUnG0114600' => 'rsi', 'RhsimUnG0114700' => 'rsi', 'Sabra02G0034800' => 'sbr', 'Sabra02G0035100' => 'sbr', 'Sabra05G0168600' => 'sbr', 'Sabra05G0168800' => 'sbr', 'Sabra08G0123700' => 'sbr', 'Sabra10G0031900' => 'sbr', 'Sabra13G0039000' => 'sbr', 'SalBow2G0782' => 'sbo', 'SalBow2G1403' => 'sbo', 'SalBow4G0074' => 'sbo', 'SalBow4G2635' => 'sbo', 'SalBow5G3010' => 'sbo', 'Sc05g0000870' => 'sci', 'Sc05g0000890' => 'sci', 'Sc13g0005000' => 'sci', 'Sc13g0005030' => 'sci', 'Sc19g0003790' => 'sci', 'Sc19g0003800' => 'sci', 'Sed0003467' => 'sed', 'Sed0009355' => 'sed', 'Sed0009894' => 'sed', 'Sed0011972' => 'sed', 'Sed0021483' => 'sed', 'Sed0021750' => 'sed', 'Sed0026279' => 'sed', 'SEGI_05312' => 'sgi', 'SEGI_10112' => 'sgi', 'SEGI_15835' => 'sgi', 'SEGI_30386' => 'sgi', 'SEGI_34122' => 'sgi', 'SEGI_35063' => 'sgi', 'SGA_v2.0_scaffold101G29794' => 'sas', 'SGA_v2.0_scaffold1G00573' => 'sas', 'SGA_v2.0_scaffold79G25637' => 'sas', 'SGA_v2.0_scaffold88G27283' => 'sas', 'SGA_v2.0_scaffold88G27285' => 'sas', 'SGA_v2.0_scaffold88G27331' => 'sas', 'SHI09937' => 'shi', 'SMO119G0302' => 'smo', 'SMO137G0231' => 'smo', 'SMO367G1151' => 'smo', 'Solyc02g082000.3' => 'sly', 'Solyc06g031670.3' => 'sly', 'Solyc06g053810.3' => 'sly', 'Solyc07g025457.1' => 'sly', 'Solyc08g059740.1' => 'sly', 'Solyc08g059750.3' => 'sly', 'Solyc09g083370.3' => 'sly', 'Solyc12g038950.3' => 'sly', 'Sopen02g026630' => 'spe', 'Sopen06g018930' => 'spe', 'Sopen06g018940' => 'spe', 'Sopen08g009460' => 'spe', 'Sopen09g032290' => 'spe', 'Sp1g03080' => 'spa', 'Sp1g03090' => 'spa', 'Sp1g05480' => 'spa', 'Sp2g07860' => 'spa', 'Sp2g08430' => 'spa', 'Sp2g08440' => 'spa', 'Sp2g26200' => 'spa', 'Sp4g13170' => 'spa', 'Sp6g33840' => 'spa', 'SpUn1204_0010' => 'spa', 'TAR365G0908' => 'tar', 'TAR381G1270' => 'tar', 'TAR381G1651' => 'tar', 'TAR625G1131' => 'tar', 'TAR633G0962' => 'tar', 'TAR633G1729' => 'tar', 'TAR633G1864' => 'tar', 'TAR636G0221' => 'tar', 'TAR636G0314' => 'tar', 'TAR636G3202' => 'tar', 'THA.LOC104800805' => 'tha', 'THA.LOC104801096' => 'tha', 'THA.LOC104801555' => 'tha', 'THA.LOC104808491' => 'tha', 'THA.LOC104808595' => 'tha', 'THA.LOC104815985' => 'tha', 'THA.LOC104822250' => 'tha', 'THA.LOC104826071' => 'tha', 'Thecc.01G265200' => 'tca', 'Thecc.01G265300' => 'tca', 'Thecc.01G265700' => 'tca', 'Thecc.03G109100' => 'tca', 'Thecc.04G245900' => 'tca', 'Thecc.04G246000' => 'tca', 'Thhalv10003334m.g' => 'esa', 'Thhalv10005508m.g' => 'esa', 'Thhalv10005643m.g' => 'esa', 'Thhalv10007316m.g' => 'esa', 'Thhalv10009006m.g' => 'esa', 'Thhalv10009309m.g' => 'esa', 'Thhalv10014917m.g' => 'esa', 'Thhalv10014919m.g' => 'esa', 'Thhalv10015393m.g' => 'esa', 'Thhalv10016515m.g' => 'esa', 'Thhalv10029242m.g' => 'esa', 'TPR.G16654' => 'tpr', 'TPR.G20589' => 'tpr', 'TPR.G23029' => 'tpr', 'TPR.G27731' => 'tpr', 'TPR.G28889' => 'tpr', 'TPR.G28899' => 'tpr', 'TPR.G30846' => 'tpr', 'TPR.G5452' => 'tpr', 'TPR.G5713' => 'tpr', 'TPR.G9046' => 'tpr', 'TPR.G9061' => 'tpr', 'TWI09G1075' => 'twi', 'TWI12G0806' => 'twi', 'TWI18G0108' => 'twi', 'TWI53G1361' => 'twi', 'TWI73G0185' => 'twi', 'TWI73G0427' => 'twi', 'unitig_37.g12001' => 'ugi', 'unitig_747.g21660' => 'ugi', 'unitig_748.g7232' => 'ugi', 'unitig_748.g7315' => 'ugi', 'unitig_85.g27262' => 'ugi', 'unitig_92.g28220' => 'ugi', 'vmacro02632' => 'vma', 'vmacro08410' => 'vma', 'vmacro08411' => 'vma', 'vmacro15407' => 'vma', 'VMungo0251G3619' => 'vmu', 'VMungo0720G1204' => 'vmu', 'VMungo0720G1918' => 'vmu', 'VMungo0720G2387' => 'vmu', 'VMungo0720G2961' => 'vmu', 'VMungo1215G2154' => 'vmu', 'VMungo1383G2411' => 'vmu', 'Zm00001eb051130' => 'zma', 'Zm00001eb116830' => 'zma', 'Zm00001eb116850' => 'zma', 'Zm00001eb151740' => 'zma', 'Zm00001eb292360' => 'zma', 'Zm00001eb301640' => 'zma' ), 'gf_id' => 'HOM05D000856', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000856' ), 'data_identifier' => 'HOM05D000856', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000856', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p00010' => 'bna', 'A03p04160' => 'bna', 'A03p17160' => 'bna', 'A04p23370' => 'bna', 'A05p14860' => 'bna', 'A08p37020' => 'bna', 'A09p08050' => 'bna', 'A09p66800' => 'bna', 'A09p67940' => 'bna', 'A10p02680' => 'bna', 'A10p05320' => 'bna', 'Aa31LG1G20560' => 'aar', 'Aa31LG1G20610' => 'aar', 'Aa31LG1G7810' => 'aar', 'Aa31LG5G3590' => 'aar', 'Aa31LG5G6140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3819' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4683' => 'aag', 'Actinidia04480' => 'ach', 'Actinidia05466' => 'ach', 'Actinidia08445' => 'ach', 'Actinidia21170' => 'ach', 'Actinidia24812' => 'ach', 'Actinidia24951' => 'ach', 'Actinidia40088' => 'ach', 'Ah.02g111660' => 'amhyb', 'Ah.11g048900' => 'amhyb', 'Ah.11g049910' => 'amhyb', 'AL1G13870' => 'aly', 'AL1G13880' => 'aly', 'AL1G16760' => 'aly', 'AL390U10020' => 'aly', 'AL4G25520' => 'aly', 'AL6G19890' => 'aly', 'AL6G19900' => 'aly', 'AL6G19910' => 'aly', 'AL8G40100' => 'aly', 'Aqoxy2G03562' => 'aox', 'Aqoxy5G00316' => 'aox', 'Aqoxy5G00926' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1628KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1H403S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2FU6SJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.882I6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8YRY2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YN1SN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AF70II' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZA8L1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F916KL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHRD8H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KTZ8QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S22EMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8M29T' => 'arhy', 'AT1G04270' => 'ath', 'AT1G04280' => 'ath', 'AT1G06750' => 'ath', 'AT1G33850' => 'ath', 'AT2G30630' => 'ath', 'AT5G09490' => 'ath', 'AT5G09500' => 'ath', 'AT5G09510' => 'ath', 'AT5G43640' => 'ath', 'AT5G63070' => 'ath', 'ATR0605G315' => 'atr', 'Atru.chr11.175' => 'acertr', 'Atru.chr11.653' => 'acertr', 'Atru.chr3.1616' => 'acertr', 'Atru.chr4.2230' => 'acertr', 'Atru.chr4.2232' => 'acertr', 'Atru.chr5.1598' => 'acertr', 'Atru.chr5.1600' => 'acertr', 'Atru.chr5.2188' => 'acertr', 'AUR62008326' => 'cqu', 'AUR62011922' => 'cqu', 'AUR62011924' => 'cqu', 'AUR62021771' => 'cqu', 'AUR62032237' => 'cqu', 'AUR62032240' => 'cqu', 'BcaB01g05572' => 'bca', 'BcaB02g10337' => 'bca', 'BcaB04g19944' => 'bca', 'BcaB05g21548' => 'bca', 'BcaB05g21549' => 'bca', 'BcaB05g23227' => 'bca', 'BcaB06g26256' => 'bca', 'BcaB06g26257' => 'bca', 'BcaB06g28379' => 'bca', 'BcaC02g11159' => 'bca', 'BcaC03g13258' => 'bca', 'BcaC03g13259' => 'bca', 'BcaC05g24456' => 'bca', 'BcaC05g24457' => 'bca', 'BcaC07g36922' => 'bca', 'BcaC07g36923' => 'bca', 'BcaC07g42050' => 'bca', 'BcaC07g42176' => 'bca', 'BcaC07g42195' => 'bca', 'BcaC07g42196' => 'bca', 'BcaNung06674' => 'bca', 'BolC2t06351H' => 'bol', 'BolC2t06352H' => 'bol', 'BolC3t12993H' => 'bol', 'BolC4t23525H' => 'bol', 'BolC4t27475H' => 'bol', 'BolC5t29025H' => 'bol', 'BolC5t29026H' => 'bol', 'BolC8t46898H' => 'bol', 'BolC8t46899H' => 'bol', 'BolC8t52630H' => 'bol', 'BolC8t52765H' => 'bol', 'BolC9t53824H' => 'bol', 'BraA03t09760Z' => 'bra', 'BraA03t10990Z' => 'bra', 'BraA05t20413Z' => 'bra', 'BraA08t35602Z' => 'bra', 'BraA09t36458Z' => 'bra', 'BraA09t42018Z' => 'bra', 'BraA09t42129Z' => 'bra', 'BraA10t42536Z' => 'bra', 'BraA10t42537Z' => 'bra', 'C01p10690' => 'bna', 'C02p03890' => 'bna', 'C02p03900' => 'bna', 'C03p04620' => 'bna', 'C04p19870' => 'bna', 'C04p59670' => 'bna', 'C05p02460' => 'bna', 'C05p02470' => 'bna', 'C08p00980' => 'bna', 'C08p00990' => 'bna', 'C08p51030' => 'bna', 'C08p52360' => 'bna', 'C09p09120' => 'bna', 'CAN.G19.15' => 'can', 'CAN.G251.10' => 'can', 'CAN.G251.9' => 'can', 'CAN.G398.24' => 'can', 'CAN.G410.32' => 'can', 'CAN.G881.2' => 'can', 'CANSAT01G3025' => 'cansat', 'CANSAT78G1211' => 'cansat', 'CANSAT78G1218' => 'cansat', 'CANSAT78G1521' => 'cansat', 'CANSAT78G1670' => 'cansat', 'CARHR003600' => 'chi', 'CARHR003610' => 'chi', 'CARHR006290' => 'chi', 'CARHR006430' => 'chi', 'CARHR124110' => 'chi', 'CARHR203870' => 'chi', 'CARHR203880' => 'chi', 'CARHR203890' => 'chi', 'CARHR276880' => 'chi', 'Carub.0001s0346' => 'cru', 'Carub.0001s0347' => 'cru', 'Carub.0001s0607' => 'cru', 'Carub.0003s2768' => 'cru', 'Carub.0003s2769' => 'cru', 'Carub.0004s1178' => 'cru', 'Carub.0006s0806' => 'cru', 'Carub.0006s0807' => 'cru', 'Carub.0006s0808' => 'cru', 'Carub.0008s0501' => 'cru', 'Carub.0008s2379' => 'cru', 'Ca_08655_v3' => 'car', 'Ca_08922_v3' => 'car', 'Ca_08923_v3' => 'car', 'Ca_09119_v3' => 'car', 'Ca_09703_v3' => 'car', 'Ca_09705_v3' => 'car', 'Ca_09835_v3' => 'car', 'Ca_26403_v3' => 'car', 'Ca_30719_v3' => 'car', 'CBR_g17958' => 'cbr', 'CBR_g40516' => 'cbr', 'Cc00_g05350' => 'ccan', 'Cc01_g18690' => 'ccan', 'Cc03_g04830' => 'ccan', 'Cc03_g04850' => 'ccan', 'CDE02G4469' => 'cde', 'CDE06G0883' => 'cde', 'CDE06G1295' => 'cde', 'CDE06G1390' => 'cde', 'CDE07G0584' => 'cde', 'CDE07G1084' => 'cde', 'CDE08G1259' => 'cde', 'Cfa002341' => 'cfa', 'Cfa024337' => 'cfa', 'Ciclev10004749m.g' => 'ccl', 'Ciclev10006127m.g' => 'ccl', 'Ciclev10019720m.g' => 'ccl', 'Ciclev10022652m.g' => 'ccl', 'CiPaw.01G190400' => 'cil', 'CiPaw.01G190500' => 'cil', 'CiPaw.02G116400' => 'cil', 'CiPaw.02G116500' => 'cil', 'CiPaw.04G183000' => 'cil', 'CiPaw.04G183300' => 'cil', 'ClCG05G004610' => 'cla', 'ClCG05G004620' => 'cla', 'ClCG06G006730' => 'cla', 'ClCG06G006740' => 'cla', 'ClCG11G003690' => 'cla', 'COL.COLO4_08276' => 'col', 'COL.COLO4_08277' => 'col', 'COL.COLO4_15787' => 'col', 'COL.COLO4_15789' => 'col', 'Cpa.g.c44815' => 'cpa', 'Cpa.g.sc52.144' => 'cpa', 'Cpa.g.sc58.46' => 'cpa', 'Cpa.g.sc58.47' => 'cpa', 'Cre08.g360900' => 'cre', 'CsaV3_2G013030' => 'csa', 'CsaV3_2G013050' => 'csa', 'CsaV3_2G015620' => 'csa', 'CsaV3_3G012590' => 'csa', 'CsaV3_3G012600' => 'csa', 'CSS0001641' => 'camsi', 'CSS0008310' => 'camsi', 'CSS0013011' => 'camsi', 'CSS0017147' => 'camsi', 'CSS0022970' => 'camsi', 'CSS0025655' => 'camsi', 'CSS0028665' => 'camsi', 'CSS0029117' => 'camsi', 'CSS0032024' => 'camsi', 'CSS0039681' => 'camsi', 'CSS0046516' => 'camsi', 'CSS0050307' => 'camsi', 'DCAR_005871' => 'dca', 'DCAR_007342' => 'dca', 'DCAR_024228' => 'dca', 'DCAR_027277' => 'dca', 'DCAR_030718' => 'dca', 'Dinv20287' => 'din', 'Dinv22461' => 'din', 'Dinv22464' => 'din', 'Dinv29912' => 'din', 'Dinv29913' => 'din', 'Dinv34580' => 'din', 'Dinv34582' => 'din', 'Dinv44632' => 'din', 'Duzib052G0266' => 'dzi', 'Duzib133G0907' => 'dzi', 'Duzib133G1034' => 'dzi', 'Duzib138G0207' => 'dzi', 'Duzib138G0491' => 'dzi', 'Duzib151G0812' => 'dzi', 'Duzib151G1166' => 'dzi', 'Duzib168G0192' => 'dzi', 'Duzib211G0077' => 'dzi', 'Duzib212G0429' => 'dzi', 'Duzib212G0472' => 'dzi', 'ECA233G2617' => 'eca', 'ECA236G4188' => 'eca', 'ECA240G0936' => 'eca', 'ECA240G1129' => 'eca', 'ECA247G0623' => 'eca', 'EL10Ac5g10451' => 'bvu', 'EL10Ac5g10453' => 'bvu', 'EL10Ac5g10894' => 'bvu', 'Eucgr.H00192' => 'egr', 'Eucgr.H00193' => 'egr', 'Eucgr.H00194' => 'egr', 'Eucgr.J01562' => 'egr', 'Eucgr.K03301' => 'egr', 'FAN02G0632' => 'fan', 'FAN05G5378' => 'fan', 'FAN09G3247' => 'fan', 'FAN12G0435' => 'fan', 'FAN12G2426' => 'fan', 'FAN14G1707' => 'fan', 'FAN14G4725' => 'fan', 'FAN15G2071' => 'fan', 'FAN17G3065' => 'fan', 'FAN19G1376' => 'fan', 'FAN20G0354' => 'fan', 'FAN20G2429' => 'fan', 'FAN20G2658' => 'fan', 'FAN24G2343' => 'fan', 'FAN27G2362' => 'fan', 'FAN28G1765' => 'fan', 'FvH4_1g16020' => 'fve', 'FvH4_2g04890' => 'fve', 'FvH4_2g22270' => 'fve', 'FvH4_4g02630' => 'fve', 'FvH4_4g02640' => 'fve', 'FvH4_6g02650' => 'fve', 'Glyma.02G140600' => 'gma', 'Glyma.03G159900' => 'gma', 'Glyma.05G234800' => 'gma', 'Glyma.07G269600' => 'gma', 'Glyma.08G042300' => 'gma', 'Glyma.10G033500' => 'gma', 'Glyma.10G185200' => 'gma', 'Glyma.17G004300' => 'gma', 'Glyma.19G161900' => 'gma', 'Glyma.20G205100' => 'gma', 'Glyma.20G205200' => 'gma', 'Gohir.A01G139101' => 'ghi', 'Gohir.A02G035600' => 'ghi', 'Gohir.A02G117901' => 'ghi', 'Gohir.A07G210100' => 'ghi', 'Gohir.A07G210200' => 'ghi', 'Gohir.A08G061100' => 'ghi', 'Gohir.A09G223000' => 'ghi', 'Gohir.A09G223100' => 'ghi', 'Gohir.A10G113900' => 'ghi', 'Gohir.A10G114000' => 'ghi', 'Gohir.D02G042300' => 'ghi', 'Gohir.D07G216100' => 'ghi', 'Gohir.D07G216200' => 'ghi', 'Gohir.D08G070400' => 'ghi', 'Gohir.D09G225000' => 'ghi', 'Gohir.D09G225100' => 'ghi', 'Gohir.D10G152300' => 'ghi', 'Gohir.D10G153200' => 'ghi', 'Gohir.D11G133701' => 'ghi', 'Gorai.004G074100' => 'gra', 'Gorai.005G046800' => 'gra', 'Gorai.006G246500' => 'gra', 'Gorai.006G246600' => 'gra', 'Gorai.007G142900' => 'gra', 'Gorai.011G171000' => 'gra', 'Gorai.011G171100' => 'gra', 'Gorai.013G104300' => 'gra', 'Gorai.013G104400' => 'gra', 'GSVIVG01000754001' => 'vvi', 'GSVIVG01000756001' => 'vvi', 'GSVIVG01010903001' => 'vvi', 'GSVIVG01017623001' => 'vvi', 'GSVIVG01018113001' => 'vvi', 'GSVIVG01018116001' => 'vvi', 'GSVIVG01018118001' => 'vvi', 'HanXRQChr03g0076211' => 'han', 'HanXRQChr03g0092431' => 'han', 'HanXRQChr03g0092441' => 'han', 'HanXRQChr03g0092591' => 'han', 'HanXRQChr03g0092671' => 'han', 'HanXRQChr03g0092681' => 'han', 'HanXRQChr03g0092691' => 'han', 'HanXRQChr03g0092701' => 'han', 'HanXRQChr03g0092721' => 'han', 'HanXRQChr03g0092731' => 'han', 'HanXRQChr04g0113681' => 'han', 'HanXRQChr10g0281371' => 'han', 'HanXRQChr11g0337141' => 'han', 'HanXRQChr13g0424521' => 'han', 'HanXRQChr13g0424531' => 'han', 'HanXRQChr13g0424541' => 'han', 'HanXRQChr16g0498221' => 'han', 'Haze_04377' => 'cav', 'Haze_11298' => 'cav', 'Haze_24547' => 'cav', 'Haze_24550' => 'cav', 'Haze_26587' => 'cav', 'Hma1.2p1_0650F.1_g195410' => 'hma', 'Hma1.2p1_0893F.1_g233470' => 'hma', 'HPP92_006508' => 'vpl', 'HPP92_024780' => 'vpl', 'Hund02688' => 'sun', 'Hund09380' => 'sun', 'Hund09381' => 'sun', 'Hund09832' => 'sun', 'Hund09833' => 'sun', 'Hund11351' => 'sun', 'Hund11513' => 'sun', 'Lalb_Chr06g0162591' => 'lal', 'Lalb_Chr06g0162601' => 'lal', 'Lalb_Chr06g0169321' => 'lal', 'Lalb_Chr09g0330951' => 'lal', 'Lalb_Chr16g0387631' => 'lal', 'Lalb_Chr21g0306241' => 'lal', 'Lalb_Chr25g0290051' => 'lal', 'Lalb_Chr25g0290061' => 'lal', 'Lalb_Chr25g0290071' => 'lal', 'Lj1g0003876' => 'lja', 'Lj1P1207T36' => 'lonja', 'Lj2C1156G12' => 'lonja', 'Lj3A793G39' => 'lonja', 'Lj3C580G2' => 'lonja', 'Lj3C780G2' => 'lonja', 'Lj3C780T4' => 'lonja', 'Lj3C793G9' => 'lonja', 'Lj4g0012960' => 'lja', 'Lj5g0021252' => 'lja', 'Lj5g0021484' => 'lja', 'Lj5g0024528' => 'lja', 'Lj6A399T12' => 'lonja', 'Lj6A656G65' => 'lonja', 'Lsat_1_v5_gn_3_125500' => 'lsa', 'Lsat_1_v5_gn_3_125540' => 'lsa', 'Lsat_1_v5_gn_5_72701' => 'lsa', 'Lsat_1_v5_gn_8_91560' => 'lsa', 'Lsat_1_v5_gn_9_9640' => 'lsa', 'Manes.01G200600' => 'mes', 'Manes.01G200700' => 'mes', 'Manes.03G168900' => 'mes', 'Manes.03G169000' => 'mes', 'Manes.05G085801' => 'mes', 'Manes.05G086200' => 'mes', 'Manes.15G036700' => 'mes', 'Manes.15G036900' => 'mes', 'Mapoly0004s0172' => 'mpo', 'Mapoly0023s0001' => 'mpo', 'Mapoly0142s0012' => 'mpo', 'MBI01_g32854_MAGBIO' => 'mbi', 'MBI11_g24427_MAGBIO' => 'mbi', 'MBI11_g47319_MAGBIO' => 'mbi', 'MCO01G433' => 'mco', 'MD00G1187800' => 'mdo', 'MD04G1226500' => 'mdo', 'MD05G1203900' => 'mdo', 'MD10G1191100' => 'mdo', 'MD12G1243500' => 'mdo', 'MD13G1207000' => 'mdo', 'MD13G1207100' => 'mdo', 'MD16G1208600' => 'mdo', 'Medtr1g050352' => 'mtr', 'Medtr1g070385' => 'mtr', 'Medtr1g070450' => 'mtr', 'Medtr1g075200' => 'mtr', 'Medtr1g075250' => 'mtr', 'Medtr1g075260' => 'mtr', 'Medtr1g475250' => 'mtr', 'Medtr4g075450' => 'mtr', 'Medtr7g096300' => 'mtr', 'Medtr8g105110' => 'mtr', 'MELO3C006470.2' => 'cme', 'MELO3C006471.2' => 'cme', 'MELO3C020772.2' => 'cme', 'MELO3C026780.2' => 'cme', 'MELO3C026781.2' => 'cme', 'Migut.D00390' => 'egut', 'Migut.G00435' => 'egut', 'Migut.G00436' => 'egut', 'Migut.G00718' => 'egut', 'MSTRG.21891' => 'ama', 'MSTRG.26910' => 'ama', 'MSTRG.4099' => 'ama', 'MSTRG.9925' => 'ama', 'Nitab4.5_0000165g0010' => 'nta', 'Nitab4.5_0000209g0180' => 'nta', 'Nitab4.5_0000244g0440' => 'nta', 'Nitab4.5_0000525g0220' => 'nta', 'Nitab4.5_0001597g0020' => 'nta', 'Nitab4.5_0001878g0040' => 'nta', 'Nitab4.5_0001878g0060' => 'nta', 'Nitab4.5_0002838g0100' => 'nta', 'Nitab4.5_0002838g0120' => 'nta', 'Nitab4.5_0004798g0030' => 'nta', 'Nitab4.5_0005420g0010' => 'nta', 'Nitab4.5_0005507g0010' => 'nta', 'Nitab4.5_0005574g0020' => 'nta', 'Nitab4.5_0005838g0010' => 'nta', 'Nitab4.5_0010580g0020' => 'nta', 'Nn1g02599' => 'nnu', 'Nn1g02608' => 'nnu', 'Nn3g17742' => 'nnu', 'Nn3g19534' => 'nnu', 'Nn3g19535' => 'nnu', 'Oeu008790.1' => 'oeu', 'Oeu008792.1' => 'oeu', 'Oeu032590.1' => 'oeu', 'Oeu035349.1' => 'oeu', 'Oeu049791.1' => 'oeu', 'Os01g0774500' => 'osa', 'Os03g0628800' => 'osa', 'Os03g0798600' => 'osa', 'Os05g0508800' => 'osa', 'Peaxi162Scf00036g02018' => 'pax', 'Peaxi162Scf00578g00032' => 'pax', 'Peaxi162Scf00578g00317' => 'pax', 'Peaxi162Scf00785g00114' => 'pax', 'Peaxi162Scf00813g00119' => 'pax', 'Peaxi162Scf00906g00227' => 'pax', 'PGR004G0875' => 'pgr', 'PGR004G2424' => 'pgr', 'PGR031G1239' => 'pgr', 'PGR031G2474' => 'pgr', 'PGR044G0423' => 'pgr', 'PGSC0003DMG400001128' => 'stu', 'PGSC0003DMG400007336' => 'stu', 'PGSC0003DMG400016318' => 'stu', 'PGSC0003DMG400016319' => 'stu', 'PGSC0003DMG400018074' => 'stu', 'Phvul.001G157700' => 'pvu', 'Phvul.002G148550' => 'pvu', 'Phvul.002G320200' => 'pvu', 'Phvul.003G089200' => 'pvu', 'Phvul.007G126000' => 'pvu', 'Phvul.007G126100' => 'pvu', 'Phvul.007G178000' => 'pvu', 'Phvul.007G178200' => 'pvu', 'Potri.002G043000' => 'ptr', 'Potri.002G043200' => 'ptr', 'Potri.003G123750' => 'ptr', 'Potri.005G055401' => 'ptr', 'Potri.005G219700' => 'ptr', 'Potri.005G220000' => 'ptr', 'Potri.008G161901' => 'ptr', 'Potri.008G162000' => 'ptr', 'Potri.008G162400' => 'ptr', 'Potri.010G076900' => 'ptr', 'Pp3c12_9180' => 'ppa', 'Pp3c13_19770' => 'ppa', 'Pp3c14_22950' => 'ppa', 'Pp3c16_12160' => 'ppa', 'Pp3c27_7820' => 'ppa', 'Pp3c2_3490' => 'ppa', 'Pp3c3_23700' => 'ppa', 'Pp3c3_36520' => 'ppa', 'Pp3c4_15250' => 'ppa', 'PRCOL_00007002' => 'pco', 'Prupe.1G030600' => 'ppe', 'Prupe.1G030700' => 'ppe', 'Prupe.6G345200' => 'ppe', 'Prupe.8G230300' => 'ppe', 'Prupe.8G230500' => 'ppe', 'Psat3g059600' => 'psa', 'Psat5g200920' => 'psa', 'Psat6g056440' => 'psa', 'Psat6g057360' => 'psa', 'Psat6g134120' => 'psa', 'Psat6g134160' => 'psa', 'Psat7g008640' => 'psa', 'Psat7g185240' => 'psa', 'PSO017G1330' => 'pso', 'PSO063G6097' => 'pso', 'PSO170G0835' => 'pso', 'PSO170G2499' => 'pso', 'PSO210G5058' => 'pso', 'PSO210G6154' => 'pso', 'PSO585G0031' => 'pso', 'PSO832G0264' => 'pso', 'PSO832G4288' => 'pso', 'QL03p027355' => 'qlo', 'QL03p027430' => 'qlo', 'QL04p081380' => 'qlo', 'QL06p015642' => 'qlo', 'QL06p015650' => 'qlo', 'QL06p015686' => 'qlo', 'QL12p042927' => 'qlo', 'QL93p1863_0035' => 'qlo', 'RcHm_v2.0_Chr3g0450581' => 'rch', 'RcHm_v2.0_Chr4g0390371' => 'rch', 'RcHm_v2.0_Chr4g0390381' => 'rch', 'RcHm_v2.0_Chr4g0390491' => 'rch', 'RcHm_v2.0_Chr4g0390501' => 'rch', 'RcHm_v2.0_Chr6g0289231' => 'rch', 'Rhsim04G0190400' => 'rsi', 'Rhsim04G0190500' => 'rsi', 'Rhsim04G0190600' => 'rsi', 'Rhsim13G0031400' => 'rsi', 'Rhsim13G0165600' => 'rsi', 'RhsimUnG0114600' => 'rsi', 'RhsimUnG0114700' => 'rsi', 'Sabra02G0034800' => 'sbr', 'Sabra02G0035100' => 'sbr', 'Sabra05G0168600' => 'sbr', 'Sabra05G0168800' => 'sbr', 'Sabra08G0123700' => 'sbr', 'Sabra10G0031900' => 'sbr', 'Sabra13G0039000' => 'sbr', 'SalBow2G0782' => 'sbo', 'SalBow2G1403' => 'sbo', 'SalBow4G0074' => 'sbo', 'SalBow4G2635' => 'sbo', 'SalBow5G3010' => 'sbo', 'Sc05g0000870' => 'sci', 'Sc05g0000890' => 'sci', 'Sc13g0005000' => 'sci', 'Sc13g0005030' => 'sci', 'Sc19g0003790' => 'sci', 'Sc19g0003800' => 'sci', 'Sed0003467' => 'sed', 'Sed0009355' => 'sed', 'Sed0009894' => 'sed', 'Sed0011972' => 'sed', 'Sed0021483' => 'sed', 'Sed0021750' => 'sed', 'Sed0026279' => 'sed', 'SEGI_05312' => 'sgi', 'SEGI_10112' => 'sgi', 'SEGI_15835' => 'sgi', 'SEGI_30386' => 'sgi', 'SEGI_34122' => 'sgi', 'SEGI_35063' => 'sgi', 'SGA_v2.0_scaffold101G29794' => 'sas', 'SGA_v2.0_scaffold1G00573' => 'sas', 'SGA_v2.0_scaffold79G25637' => 'sas', 'SGA_v2.0_scaffold88G27283' => 'sas', 'SGA_v2.0_scaffold88G27285' => 'sas', 'SGA_v2.0_scaffold88G27331' => 'sas', 'SHI09937' => 'shi', 'SMO119G0302' => 'smo', 'SMO137G0231' => 'smo', 'SMO367G1151' => 'smo', 'Solyc02g082000.3' => 'sly', 'Solyc06g031670.3' => 'sly', 'Solyc06g053810.3' => 'sly', 'Solyc07g025457.1' => 'sly', 'Solyc08g059740.1' => 'sly', 'Solyc08g059750.3' => 'sly', 'Solyc09g083370.3' => 'sly', 'Solyc12g038950.3' => 'sly', 'Sopen02g026630' => 'spe', 'Sopen06g018930' => 'spe', 'Sopen06g018940' => 'spe', 'Sopen08g009460' => 'spe', 'Sopen09g032290' => 'spe', 'Sp1g03080' => 'spa', 'Sp1g03090' => 'spa', 'Sp1g05480' => 'spa', 'Sp2g07860' => 'spa', 'Sp2g08430' => 'spa', 'Sp2g08440' => 'spa', 'Sp2g26200' => 'spa', 'Sp4g13170' => 'spa', 'Sp6g33840' => 'spa', 'SpUn1204_0010' => 'spa', 'TAR365G0908' => 'tar', 'TAR381G1270' => 'tar', 'TAR381G1651' => 'tar', 'TAR625G1131' => 'tar', 'TAR633G0962' => 'tar', 'TAR633G1729' => 'tar', 'TAR633G1864' => 'tar', 'TAR636G0221' => 'tar', 'TAR636G0314' => 'tar', 'TAR636G3202' => 'tar', 'THA.LOC104800805' => 'tha', 'THA.LOC104801096' => 'tha', 'THA.LOC104801555' => 'tha', 'THA.LOC104808491' => 'tha', 'THA.LOC104808595' => 'tha', 'THA.LOC104815985' => 'tha', 'THA.LOC104822250' => 'tha', 'THA.LOC104826071' => 'tha', 'Thecc.01G265200' => 'tca', 'Thecc.01G265300' => 'tca', 'Thecc.01G265700' => 'tca', 'Thecc.03G109100' => 'tca', 'Thecc.04G245900' => 'tca', 'Thecc.04G246000' => 'tca', 'Thhalv10003334m.g' => 'esa', 'Thhalv10005508m.g' => 'esa', 'Thhalv10005643m.g' => 'esa', 'Thhalv10007316m.g' => 'esa', 'Thhalv10009006m.g' => 'esa', 'Thhalv10009309m.g' => 'esa', 'Thhalv10014917m.g' => 'esa', 'Thhalv10014919m.g' => 'esa', 'Thhalv10015393m.g' => 'esa', 'Thhalv10016515m.g' => 'esa', 'Thhalv10029242m.g' => 'esa', 'TPR.G16654' => 'tpr', 'TPR.G20589' => 'tpr', 'TPR.G23029' => 'tpr', 'TPR.G27731' => 'tpr', 'TPR.G28889' => 'tpr', 'TPR.G28899' => 'tpr', 'TPR.G30846' => 'tpr', 'TPR.G5452' => 'tpr', 'TPR.G5713' => 'tpr', 'TPR.G9046' => 'tpr', 'TPR.G9061' => 'tpr', 'TWI09G1075' => 'twi', 'TWI12G0806' => 'twi', 'TWI18G0108' => 'twi', 'TWI53G1361' => 'twi', 'TWI73G0185' => 'twi', 'TWI73G0427' => 'twi', 'unitig_37.g12001' => 'ugi', 'unitig_747.g21660' => 'ugi', 'unitig_748.g7232' => 'ugi', 'unitig_748.g7315' => 'ugi', 'unitig_85.g27262' => 'ugi', 'unitig_92.g28220' => 'ugi', 'vmacro02632' => 'vma', 'vmacro08410' => 'vma', 'vmacro08411' => 'vma', 'vmacro15407' => 'vma', 'VMungo0251G3619' => 'vmu', 'VMungo0720G1204' => 'vmu', 'VMungo0720G1918' => 'vmu', 'VMungo0720G2387' => 'vmu', 'VMungo0720G2961' => 'vmu', 'VMungo1215G2154' => 'vmu', 'VMungo1383G2411' => 'vmu', 'Zm00001eb051130' => 'zma', 'Zm00001eb116830' => 'zma', 'Zm00001eb116850' => 'zma', 'Zm00001eb151740' => 'zma', 'Zm00001eb292360' => 'zma', 'Zm00001eb301640' => 'zma' ) $gf_id = 'HOM05D000856' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000856' ) $data_identifier = 'HOM05D000856' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 13, 'ath' => (int) 10, 'atr' => (int) 1, 'acertr' => (int) 8, 'cqu' => (int) 6, 'bca' => (int) 21, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 11, 'car' => (int) 9, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 8, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 5, 'fan' => (int) 16, 'fve' => (int) 6, 'gma' => (int) 11, 'ghi' => (int) 19, 'gra' => (int) 9, 'vvi' => (int) 7, 'han' => (int) 17, 'cav' => (int) 5, 'hma' => (int) 2, 'vpl' => (int) 2, 'sun' => (int) 7, 'lal' => (int) 9, 'lja' => (int) 5, 'lonja' => (int) 9, 'lsa' => (int) 5, 'mes' => (int) 8, 'mpo' => (int) 3, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 10, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 15, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 9, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 9, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 6, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 5, 'spa' => (int) 10, 'tar' => (int) 10, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 11, 'tpr' => (int) 11, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 4, 'vmu' => (int) 7, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb301640' $species_info = array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ) $local_species = 'col' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000856', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p00010' => 'bna', 'A03p04160' => 'bna', 'A03p17160' => 'bna', 'A04p23370' => 'bna', 'A05p14860' => 'bna', 'A08p37020' => 'bna', 'A09p08050' => 'bna', 'A09p66800' => 'bna', 'A09p67940' => 'bna', 'A10p02680' => 'bna', 'A10p05320' => 'bna', 'Aa31LG1G20560' => 'aar', 'Aa31LG1G20610' => 'aar', 'Aa31LG1G7810' => 'aar', 'Aa31LG5G3590' => 'aar', 'Aa31LG5G6140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3819' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4683' => 'aag', 'Actinidia04480' => 'ach', 'Actinidia05466' => 'ach', 'Actinidia08445' => 'ach', 'Actinidia21170' => 'ach', 'Actinidia24812' => 'ach', 'Actinidia24951' => 'ach', 'Actinidia40088' => 'ach', 'Ah.02g111660' => 'amhyb', 'Ah.11g048900' => 'amhyb', 'Ah.11g049910' => 'amhyb', 'AL1G13870' => 'aly', 'AL1G13880' => 'aly', 'AL1G16760' => 'aly', 'AL390U10020' => 'aly', 'AL4G25520' => 'aly', 'AL6G19890' => 'aly', 'AL6G19900' => 'aly', 'AL6G19910' => 'aly', 'AL8G40100' => 'aly', 'Aqoxy2G03562' => 'aox', 'Aqoxy5G00316' => 'aox', 'Aqoxy5G00926' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1628KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1H403S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2FU6SJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.882I6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8YRY2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YN1SN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AF70II' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZA8L1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F916KL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHRD8H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KTZ8QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S22EMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8M29T' => 'arhy', 'AT1G04270' => 'ath', 'AT1G04280' => 'ath', 'AT1G06750' => 'ath', 'AT1G33850' => 'ath', 'AT2G30630' => 'ath', 'AT5G09490' => 'ath', 'AT5G09500' => 'ath', 'AT5G09510' => 'ath', 'AT5G43640' => 'ath', 'AT5G63070' => 'ath', 'ATR0605G315' => 'atr', 'Atru.chr11.175' => 'acertr', 'Atru.chr11.653' => 'acertr', 'Atru.chr3.1616' => 'acertr', 'Atru.chr4.2230' => 'acertr', 'Atru.chr4.2232' => 'acertr', 'Atru.chr5.1598' => 'acertr', 'Atru.chr5.1600' => 'acertr', 'Atru.chr5.2188' => 'acertr', 'AUR62008326' => 'cqu', 'AUR62011922' => 'cqu', 'AUR62011924' => 'cqu', 'AUR62021771' => 'cqu', 'AUR62032237' => 'cqu', 'AUR62032240' => 'cqu', 'BcaB01g05572' => 'bca', 'BcaB02g10337' => 'bca', 'BcaB04g19944' => 'bca', 'BcaB05g21548' => 'bca', 'BcaB05g21549' => 'bca', 'BcaB05g23227' => 'bca', 'BcaB06g26256' => 'bca', 'BcaB06g26257' => 'bca', 'BcaB06g28379' => 'bca', 'BcaC02g11159' => 'bca', 'BcaC03g13258' => 'bca', 'BcaC03g13259' => 'bca', 'BcaC05g24456' => 'bca', 'BcaC05g24457' => 'bca', 'BcaC07g36922' => 'bca', 'BcaC07g36923' => 'bca', 'BcaC07g42050' => 'bca', 'BcaC07g42176' => 'bca', 'BcaC07g42195' => 'bca', 'BcaC07g42196' => 'bca', 'BcaNung06674' => 'bca', 'BolC2t06351H' => 'bol', 'BolC2t06352H' => 'bol', 'BolC3t12993H' => 'bol', 'BolC4t23525H' => 'bol', 'BolC4t27475H' => 'bol', 'BolC5t29025H' => 'bol', 'BolC5t29026H' => 'bol', 'BolC8t46898H' => 'bol', 'BolC8t46899H' => 'bol', 'BolC8t52630H' => 'bol', 'BolC8t52765H' => 'bol', 'BolC9t53824H' => 'bol', 'BraA03t09760Z' => 'bra', 'BraA03t10990Z' => 'bra', 'BraA05t20413Z' => 'bra', 'BraA08t35602Z' => 'bra', 'BraA09t36458Z' => 'bra', 'BraA09t42018Z' => 'bra', 'BraA09t42129Z' => 'bra', 'BraA10t42536Z' => 'bra', 'BraA10t42537Z' => 'bra', 'C01p10690' => 'bna', 'C02p03890' => 'bna', 'C02p03900' => 'bna', 'C03p04620' => 'bna', 'C04p19870' => 'bna', 'C04p59670' => 'bna', 'C05p02460' => 'bna', 'C05p02470' => 'bna', 'C08p00980' => 'bna', 'C08p00990' => 'bna', 'C08p51030' => 'bna', 'C08p52360' => 'bna', 'C09p09120' => 'bna', 'CAN.G19.15' => 'can', 'CAN.G251.10' => 'can', 'CAN.G251.9' => 'can', 'CAN.G398.24' => 'can', 'CAN.G410.32' => 'can', 'CAN.G881.2' => 'can', 'CANSAT01G3025' => 'cansat', 'CANSAT78G1211' => 'cansat', 'CANSAT78G1218' => 'cansat', 'CANSAT78G1521' => 'cansat', 'CANSAT78G1670' => 'cansat', 'CARHR003600' => 'chi', 'CARHR003610' => 'chi', 'CARHR006290' => 'chi', 'CARHR006430' => 'chi', 'CARHR124110' => 'chi', 'CARHR203870' => 'chi', 'CARHR203880' => 'chi', 'CARHR203890' => 'chi', 'CARHR276880' => 'chi', 'Carub.0001s0346' => 'cru', 'Carub.0001s0347' => 'cru', 'Carub.0001s0607' => 'cru', 'Carub.0003s2768' => 'cru', 'Carub.0003s2769' => 'cru', 'Carub.0004s1178' => 'cru', 'Carub.0006s0806' => 'cru', 'Carub.0006s0807' => 'cru', 'Carub.0006s0808' => 'cru', 'Carub.0008s0501' => 'cru', 'Carub.0008s2379' => 'cru', 'Ca_08655_v3' => 'car', 'Ca_08922_v3' => 'car', 'Ca_08923_v3' => 'car', 'Ca_09119_v3' => 'car', 'Ca_09703_v3' => 'car', 'Ca_09705_v3' => 'car', 'Ca_09835_v3' => 'car', 'Ca_26403_v3' => 'car', 'Ca_30719_v3' => 'car', 'CBR_g17958' => 'cbr', 'CBR_g40516' => 'cbr', 'Cc00_g05350' => 'ccan', 'Cc01_g18690' => 'ccan', 'Cc03_g04830' => 'ccan', 'Cc03_g04850' => 'ccan', 'CDE02G4469' => 'cde', 'CDE06G0883' => 'cde', 'CDE06G1295' => 'cde', 'CDE06G1390' => 'cde', 'CDE07G0584' => 'cde', 'CDE07G1084' => 'cde', 'CDE08G1259' => 'cde', 'Cfa002341' => 'cfa', 'Cfa024337' => 'cfa', 'Ciclev10004749m.g' => 'ccl', 'Ciclev10006127m.g' => 'ccl', 'Ciclev10019720m.g' => 'ccl', 'Ciclev10022652m.g' => 'ccl', 'CiPaw.01G190400' => 'cil', 'CiPaw.01G190500' => 'cil', 'CiPaw.02G116400' => 'cil', 'CiPaw.02G116500' => 'cil', 'CiPaw.04G183000' => 'cil', 'CiPaw.04G183300' => 'cil', 'ClCG05G004610' => 'cla', 'ClCG05G004620' => 'cla', 'ClCG06G006730' => 'cla', 'ClCG06G006740' => 'cla', 'ClCG11G003690' => 'cla', 'COL.COLO4_08276' => 'col', 'COL.COLO4_08277' => 'col', 'COL.COLO4_15787' => 'col', 'COL.COLO4_15789' => 'col', 'Cpa.g.c44815' => 'cpa', 'Cpa.g.sc52.144' => 'cpa', 'Cpa.g.sc58.46' => 'cpa', 'Cpa.g.sc58.47' => 'cpa', 'Cre08.g360900' => 'cre', 'CsaV3_2G013030' => 'csa', 'CsaV3_2G013050' => 'csa', 'CsaV3_2G015620' => 'csa', 'CsaV3_3G012590' => 'csa', 'CsaV3_3G012600' => 'csa', 'CSS0001641' => 'camsi', 'CSS0008310' => 'camsi', 'CSS0013011' => 'camsi', 'CSS0017147' => 'camsi', 'CSS0022970' => 'camsi', 'CSS0025655' => 'camsi', 'CSS0028665' => 'camsi', 'CSS0029117' => 'camsi', 'CSS0032024' => 'camsi', 'CSS0039681' => 'camsi', 'CSS0046516' => 'camsi', 'CSS0050307' => 'camsi', 'DCAR_005871' => 'dca', 'DCAR_007342' => 'dca', 'DCAR_024228' => 'dca', 'DCAR_027277' => 'dca', 'DCAR_030718' => 'dca', 'Dinv20287' => 'din', 'Dinv22461' => 'din', 'Dinv22464' => 'din', 'Dinv29912' => 'din', 'Dinv29913' => 'din', 'Dinv34580' => 'din', 'Dinv34582' => 'din', 'Dinv44632' => 'din', 'Duzib052G0266' => 'dzi', 'Duzib133G0907' => 'dzi', 'Duzib133G1034' => 'dzi', 'Duzib138G0207' => 'dzi', 'Duzib138G0491' => 'dzi', 'Duzib151G0812' => 'dzi', 'Duzib151G1166' => 'dzi', 'Duzib168G0192' => 'dzi', 'Duzib211G0077' => 'dzi', 'Duzib212G0429' => 'dzi', 'Duzib212G0472' => 'dzi', 'ECA233G2617' => 'eca', 'ECA236G4188' => 'eca', 'ECA240G0936' => 'eca', 'ECA240G1129' => 'eca', 'ECA247G0623' => 'eca', 'EL10Ac5g10451' => 'bvu', 'EL10Ac5g10453' => 'bvu', 'EL10Ac5g10894' => 'bvu', 'Eucgr.H00192' => 'egr', 'Eucgr.H00193' => 'egr', 'Eucgr.H00194' => 'egr', 'Eucgr.J01562' => 'egr', 'Eucgr.K03301' => 'egr', 'FAN02G0632' => 'fan', 'FAN05G5378' => 'fan', 'FAN09G3247' => 'fan', 'FAN12G0435' => 'fan', 'FAN12G2426' => 'fan', 'FAN14G1707' => 'fan', 'FAN14G4725' => 'fan', 'FAN15G2071' => 'fan', 'FAN17G3065' => 'fan', 'FAN19G1376' => 'fan', 'FAN20G0354' => 'fan', 'FAN20G2429' => 'fan', 'FAN20G2658' => 'fan', 'FAN24G2343' => 'fan', 'FAN27G2362' => 'fan', 'FAN28G1765' => 'fan', 'FvH4_1g16020' => 'fve', 'FvH4_2g04890' => 'fve', 'FvH4_2g22270' => 'fve', 'FvH4_4g02630' => 'fve', 'FvH4_4g02640' => 'fve', 'FvH4_6g02650' => 'fve', 'Glyma.02G140600' => 'gma', 'Glyma.03G159900' => 'gma', 'Glyma.05G234800' => 'gma', 'Glyma.07G269600' => 'gma', 'Glyma.08G042300' => 'gma', 'Glyma.10G033500' => 'gma', 'Glyma.10G185200' => 'gma', 'Glyma.17G004300' => 'gma', 'Glyma.19G161900' => 'gma', 'Glyma.20G205100' => 'gma', 'Glyma.20G205200' => 'gma', 'Gohir.A01G139101' => 'ghi', 'Gohir.A02G035600' => 'ghi', 'Gohir.A02G117901' => 'ghi', 'Gohir.A07G210100' => 'ghi', 'Gohir.A07G210200' => 'ghi', 'Gohir.A08G061100' => 'ghi', 'Gohir.A09G223000' => 'ghi', 'Gohir.A09G223100' => 'ghi', 'Gohir.A10G113900' => 'ghi', 'Gohir.A10G114000' => 'ghi', 'Gohir.D02G042300' => 'ghi', 'Gohir.D07G216100' => 'ghi', 'Gohir.D07G216200' => 'ghi', 'Gohir.D08G070400' => 'ghi', 'Gohir.D09G225000' => 'ghi', 'Gohir.D09G225100' => 'ghi', 'Gohir.D10G152300' => 'ghi', 'Gohir.D10G153200' => 'ghi', 'Gohir.D11G133701' => 'ghi', 'Gorai.004G074100' => 'gra', 'Gorai.005G046800' => 'gra', 'Gorai.006G246500' => 'gra', 'Gorai.006G246600' => 'gra', 'Gorai.007G142900' => 'gra', 'Gorai.011G171000' => 'gra', 'Gorai.011G171100' => 'gra', 'Gorai.013G104300' => 'gra', 'Gorai.013G104400' => 'gra', 'GSVIVG01000754001' => 'vvi', 'GSVIVG01000756001' => 'vvi', 'GSVIVG01010903001' => 'vvi', 'GSVIVG01017623001' => 'vvi', 'GSVIVG01018113001' => 'vvi', 'GSVIVG01018116001' => 'vvi', 'GSVIVG01018118001' => 'vvi', 'HanXRQChr03g0076211' => 'han', 'HanXRQChr03g0092431' => 'han', 'HanXRQChr03g0092441' => 'han', 'HanXRQChr03g0092591' => 'han', 'HanXRQChr03g0092671' => 'han', 'HanXRQChr03g0092681' => 'han', 'HanXRQChr03g0092691' => 'han', 'HanXRQChr03g0092701' => 'han', 'HanXRQChr03g0092721' => 'han', 'HanXRQChr03g0092731' => 'han', 'HanXRQChr04g0113681' => 'han', 'HanXRQChr10g0281371' => 'han', 'HanXRQChr11g0337141' => 'han', 'HanXRQChr13g0424521' => 'han', 'HanXRQChr13g0424531' => 'han', 'HanXRQChr13g0424541' => 'han', 'HanXRQChr16g0498221' => 'han', 'Haze_04377' => 'cav', 'Haze_11298' => 'cav', 'Haze_24547' => 'cav', 'Haze_24550' => 'cav', 'Haze_26587' => 'cav', 'Hma1.2p1_0650F.1_g195410' => 'hma', 'Hma1.2p1_0893F.1_g233470' => 'hma', 'HPP92_006508' => 'vpl', 'HPP92_024780' => 'vpl', 'Hund02688' => 'sun', 'Hund09380' => 'sun', 'Hund09381' => 'sun', 'Hund09832' => 'sun', 'Hund09833' => 'sun', 'Hund11351' => 'sun', 'Hund11513' => 'sun', 'Lalb_Chr06g0162591' => 'lal', 'Lalb_Chr06g0162601' => 'lal', 'Lalb_Chr06g0169321' => 'lal', 'Lalb_Chr09g0330951' => 'lal', 'Lalb_Chr16g0387631' => 'lal', 'Lalb_Chr21g0306241' => 'lal', 'Lalb_Chr25g0290051' => 'lal', 'Lalb_Chr25g0290061' => 'lal', 'Lalb_Chr25g0290071' => 'lal', 'Lj1g0003876' => 'lja', 'Lj1P1207T36' => 'lonja', 'Lj2C1156G12' => 'lonja', 'Lj3A793G39' => 'lonja', 'Lj3C580G2' => 'lonja', 'Lj3C780G2' => 'lonja', 'Lj3C780T4' => 'lonja', 'Lj3C793G9' => 'lonja', 'Lj4g0012960' => 'lja', 'Lj5g0021252' => 'lja', 'Lj5g0021484' => 'lja', 'Lj5g0024528' => 'lja', 'Lj6A399T12' => 'lonja', 'Lj6A656G65' => 'lonja', 'Lsat_1_v5_gn_3_125500' => 'lsa', 'Lsat_1_v5_gn_3_125540' => 'lsa', 'Lsat_1_v5_gn_5_72701' => 'lsa', 'Lsat_1_v5_gn_8_91560' => 'lsa', 'Lsat_1_v5_gn_9_9640' => 'lsa', 'Manes.01G200600' => 'mes', 'Manes.01G200700' => 'mes', 'Manes.03G168900' => 'mes', 'Manes.03G169000' => 'mes', 'Manes.05G085801' => 'mes', 'Manes.05G086200' => 'mes', 'Manes.15G036700' => 'mes', 'Manes.15G036900' => 'mes', 'Mapoly0004s0172' => 'mpo', 'Mapoly0023s0001' => 'mpo', 'Mapoly0142s0012' => 'mpo', 'MBI01_g32854_MAGBIO' => 'mbi', 'MBI11_g24427_MAGBIO' => 'mbi', 'MBI11_g47319_MAGBIO' => 'mbi', 'MCO01G433' => 'mco', 'MD00G1187800' => 'mdo', 'MD04G1226500' => 'mdo', 'MD05G1203900' => 'mdo', 'MD10G1191100' => 'mdo', 'MD12G1243500' => 'mdo', 'MD13G1207000' => 'mdo', 'MD13G1207100' => 'mdo', 'MD16G1208600' => 'mdo', 'Medtr1g050352' => 'mtr', 'Medtr1g070385' => 'mtr', 'Medtr1g070450' => 'mtr', 'Medtr1g075200' => 'mtr', 'Medtr1g075250' => 'mtr', 'Medtr1g075260' => 'mtr', 'Medtr1g475250' => 'mtr', 'Medtr4g075450' => 'mtr', 'Medtr7g096300' => 'mtr', 'Medtr8g105110' => 'mtr', 'MELO3C006470.2' => 'cme', 'MELO3C006471.2' => 'cme', 'MELO3C020772.2' => 'cme', 'MELO3C026780.2' => 'cme', 'MELO3C026781.2' => 'cme', 'Migut.D00390' => 'egut', 'Migut.G00435' => 'egut', 'Migut.G00436' => 'egut', 'Migut.G00718' => 'egut', 'MSTRG.21891' => 'ama', 'MSTRG.26910' => 'ama', 'MSTRG.4099' => 'ama', 'MSTRG.9925' => 'ama', 'Nitab4.5_0000165g0010' => 'nta', 'Nitab4.5_0000209g0180' => 'nta', 'Nitab4.5_0000244g0440' => 'nta', 'Nitab4.5_0000525g0220' => 'nta', 'Nitab4.5_0001597g0020' => 'nta', 'Nitab4.5_0001878g0040' => 'nta', 'Nitab4.5_0001878g0060' => 'nta', 'Nitab4.5_0002838g0100' => 'nta', 'Nitab4.5_0002838g0120' => 'nta', 'Nitab4.5_0004798g0030' => 'nta', 'Nitab4.5_0005420g0010' => 'nta', 'Nitab4.5_0005507g0010' => 'nta', 'Nitab4.5_0005574g0020' => 'nta', 'Nitab4.5_0005838g0010' => 'nta', 'Nitab4.5_0010580g0020' => 'nta', 'Nn1g02599' => 'nnu', 'Nn1g02608' => 'nnu', 'Nn3g17742' => 'nnu', 'Nn3g19534' => 'nnu', 'Nn3g19535' => 'nnu', 'Oeu008790.1' => 'oeu', 'Oeu008792.1' => 'oeu', 'Oeu032590.1' => 'oeu', 'Oeu035349.1' => 'oeu', 'Oeu049791.1' => 'oeu', 'Os01g0774500' => 'osa', 'Os03g0628800' => 'osa', 'Os03g0798600' => 'osa', 'Os05g0508800' => 'osa', 'Peaxi162Scf00036g02018' => 'pax', 'Peaxi162Scf00578g00032' => 'pax', 'Peaxi162Scf00578g00317' => 'pax', 'Peaxi162Scf00785g00114' => 'pax', 'Peaxi162Scf00813g00119' => 'pax', 'Peaxi162Scf00906g00227' => 'pax', 'PGR004G0875' => 'pgr', 'PGR004G2424' => 'pgr', 'PGR031G1239' => 'pgr', 'PGR031G2474' => 'pgr', 'PGR044G0423' => 'pgr', 'PGSC0003DMG400001128' => 'stu', 'PGSC0003DMG400007336' => 'stu', 'PGSC0003DMG400016318' => 'stu', 'PGSC0003DMG400016319' => 'stu', 'PGSC0003DMG400018074' => 'stu', 'Phvul.001G157700' => 'pvu', 'Phvul.002G148550' => 'pvu', 'Phvul.002G320200' => 'pvu', 'Phvul.003G089200' => 'pvu', 'Phvul.007G126000' => 'pvu', 'Phvul.007G126100' => 'pvu', 'Phvul.007G178000' => 'pvu', 'Phvul.007G178200' => 'pvu', 'Potri.002G043000' => 'ptr', 'Potri.002G043200' => 'ptr', 'Potri.003G123750' => 'ptr', 'Potri.005G055401' => 'ptr', 'Potri.005G219700' => 'ptr', 'Potri.005G220000' => 'ptr', 'Potri.008G161901' => 'ptr', 'Potri.008G162000' => 'ptr', 'Potri.008G162400' => 'ptr', 'Potri.010G076900' => 'ptr', 'Pp3c12_9180' => 'ppa', 'Pp3c13_19770' => 'ppa', 'Pp3c14_22950' => 'ppa', 'Pp3c16_12160' => 'ppa', 'Pp3c27_7820' => 'ppa', 'Pp3c2_3490' => 'ppa', 'Pp3c3_23700' => 'ppa', 'Pp3c3_36520' => 'ppa', 'Pp3c4_15250' => 'ppa', 'PRCOL_00007002' => 'pco', 'Prupe.1G030600' => 'ppe', 'Prupe.1G030700' => 'ppe', 'Prupe.6G345200' => 'ppe', 'Prupe.8G230300' => 'ppe', 'Prupe.8G230500' => 'ppe', 'Psat3g059600' => 'psa', 'Psat5g200920' => 'psa', 'Psat6g056440' => 'psa', 'Psat6g057360' => 'psa', 'Psat6g134120' => 'psa', 'Psat6g134160' => 'psa', 'Psat7g008640' => 'psa', 'Psat7g185240' => 'psa', 'PSO017G1330' => 'pso', 'PSO063G6097' => 'pso', 'PSO170G0835' => 'pso', 'PSO170G2499' => 'pso', 'PSO210G5058' => 'pso', 'PSO210G6154' => 'pso', 'PSO585G0031' => 'pso', 'PSO832G0264' => 'pso', 'PSO832G4288' => 'pso', 'QL03p027355' => 'qlo', 'QL03p027430' => 'qlo', 'QL04p081380' => 'qlo', 'QL06p015642' => 'qlo', 'QL06p015650' => 'qlo', 'QL06p015686' => 'qlo', 'QL12p042927' => 'qlo', 'QL93p1863_0035' => 'qlo', 'RcHm_v2.0_Chr3g0450581' => 'rch', 'RcHm_v2.0_Chr4g0390371' => 'rch', 'RcHm_v2.0_Chr4g0390381' => 'rch', 'RcHm_v2.0_Chr4g0390491' => 'rch', 'RcHm_v2.0_Chr4g0390501' => 'rch', 'RcHm_v2.0_Chr6g0289231' => 'rch', 'Rhsim04G0190400' => 'rsi', 'Rhsim04G0190500' => 'rsi', 'Rhsim04G0190600' => 'rsi', 'Rhsim13G0031400' => 'rsi', 'Rhsim13G0165600' => 'rsi', 'RhsimUnG0114600' => 'rsi', 'RhsimUnG0114700' => 'rsi', 'Sabra02G0034800' => 'sbr', 'Sabra02G0035100' => 'sbr', 'Sabra05G0168600' => 'sbr', 'Sabra05G0168800' => 'sbr', 'Sabra08G0123700' => 'sbr', 'Sabra10G0031900' => 'sbr', 'Sabra13G0039000' => 'sbr', 'SalBow2G0782' => 'sbo', 'SalBow2G1403' => 'sbo', 'SalBow4G0074' => 'sbo', 'SalBow4G2635' => 'sbo', 'SalBow5G3010' => 'sbo', 'Sc05g0000870' => 'sci', 'Sc05g0000890' => 'sci', 'Sc13g0005000' => 'sci', 'Sc13g0005030' => 'sci', 'Sc19g0003790' => 'sci', 'Sc19g0003800' => 'sci', 'Sed0003467' => 'sed', 'Sed0009355' => 'sed', 'Sed0009894' => 'sed', 'Sed0011972' => 'sed', 'Sed0021483' => 'sed', 'Sed0021750' => 'sed', 'Sed0026279' => 'sed', 'SEGI_05312' => 'sgi', 'SEGI_10112' => 'sgi', 'SEGI_15835' => 'sgi', 'SEGI_30386' => 'sgi', 'SEGI_34122' => 'sgi', 'SEGI_35063' => 'sgi', 'SGA_v2.0_scaffold101G29794' => 'sas', 'SGA_v2.0_scaffold1G00573' => 'sas', 'SGA_v2.0_scaffold79G25637' => 'sas', 'SGA_v2.0_scaffold88G27283' => 'sas', 'SGA_v2.0_scaffold88G27285' => 'sas', 'SGA_v2.0_scaffold88G27331' => 'sas', 'SHI09937' => 'shi', 'SMO119G0302' => 'smo', 'SMO137G0231' => 'smo', 'SMO367G1151' => 'smo', 'Solyc02g082000.3' => 'sly', 'Solyc06g031670.3' => 'sly', 'Solyc06g053810.3' => 'sly', 'Solyc07g025457.1' => 'sly', 'Solyc08g059740.1' => 'sly', 'Solyc08g059750.3' => 'sly', 'Solyc09g083370.3' => 'sly', 'Solyc12g038950.3' => 'sly', 'Sopen02g026630' => 'spe', 'Sopen06g018930' => 'spe', 'Sopen06g018940' => 'spe', 'Sopen08g009460' => 'spe', 'Sopen09g032290' => 'spe', 'Sp1g03080' => 'spa', 'Sp1g03090' => 'spa', 'Sp1g05480' => 'spa', 'Sp2g07860' => 'spa', 'Sp2g08430' => 'spa', 'Sp2g08440' => 'spa', 'Sp2g26200' => 'spa', 'Sp4g13170' => 'spa', 'Sp6g33840' => 'spa', 'SpUn1204_0010' => 'spa', 'TAR365G0908' => 'tar', 'TAR381G1270' => 'tar', 'TAR381G1651' => 'tar', 'TAR625G1131' => 'tar', 'TAR633G0962' => 'tar', 'TAR633G1729' => 'tar', 'TAR633G1864' => 'tar', 'TAR636G0221' => 'tar', 'TAR636G0314' => 'tar', 'TAR636G3202' => 'tar', 'THA.LOC104800805' => 'tha', 'THA.LOC104801096' => 'tha', 'THA.LOC104801555' => 'tha', 'THA.LOC104808491' => 'tha', 'THA.LOC104808595' => 'tha', 'THA.LOC104815985' => 'tha', 'THA.LOC104822250' => 'tha', 'THA.LOC104826071' => 'tha', 'Thecc.01G265200' => 'tca', 'Thecc.01G265300' => 'tca', 'Thecc.01G265700' => 'tca', 'Thecc.03G109100' => 'tca', 'Thecc.04G245900' => 'tca', 'Thecc.04G246000' => 'tca', 'Thhalv10003334m.g' => 'esa', 'Thhalv10005508m.g' => 'esa', 'Thhalv10005643m.g' => 'esa', 'Thhalv10007316m.g' => 'esa', 'Thhalv10009006m.g' => 'esa', 'Thhalv10009309m.g' => 'esa', 'Thhalv10014917m.g' => 'esa', 'Thhalv10014919m.g' => 'esa', 'Thhalv10015393m.g' => 'esa', 'Thhalv10016515m.g' => 'esa', 'Thhalv10029242m.g' => 'esa', 'TPR.G16654' => 'tpr', 'TPR.G20589' => 'tpr', 'TPR.G23029' => 'tpr', 'TPR.G27731' => 'tpr', 'TPR.G28889' => 'tpr', 'TPR.G28899' => 'tpr', 'TPR.G30846' => 'tpr', 'TPR.G5452' => 'tpr', 'TPR.G5713' => 'tpr', 'TPR.G9046' => 'tpr', 'TPR.G9061' => 'tpr', 'TWI09G1075' => 'twi', 'TWI12G0806' => 'twi', 'TWI18G0108' => 'twi', 'TWI53G1361' => 'twi', 'TWI73G0185' => 'twi', 'TWI73G0427' => 'twi', 'unitig_37.g12001' => 'ugi', 'unitig_747.g21660' => 'ugi', 'unitig_748.g7232' => 'ugi', 'unitig_748.g7315' => 'ugi', 'unitig_85.g27262' => 'ugi', 'unitig_92.g28220' => 'ugi', 'vmacro02632' => 'vma', 'vmacro08410' => 'vma', 'vmacro08411' => 'vma', 'vmacro15407' => 'vma', 'VMungo0251G3619' => 'vmu', 'VMungo0720G1204' => 'vmu', 'VMungo0720G1918' => 'vmu', 'VMungo0720G2387' => 'vmu', 'VMungo0720G2961' => 'vmu', 'VMungo1215G2154' => 'vmu', 'VMungo1383G2411' => 'vmu', 'Zm00001eb051130' => 'zma', 'Zm00001eb116830' => 'zma', 'Zm00001eb116850' => 'zma', 'Zm00001eb151740' => 'zma', 'Zm00001eb292360' => 'zma', 'Zm00001eb301640' => 'zma' ), 'gf_id' => 'HOM05D000856', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000856' ), 'data_identifier' => 'HOM05D000856', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000856', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p00010' => 'bna', 'A03p04160' => 'bna', 'A03p17160' => 'bna', 'A04p23370' => 'bna', 'A05p14860' => 'bna', 'A08p37020' => 'bna', 'A09p08050' => 'bna', 'A09p66800' => 'bna', 'A09p67940' => 'bna', 'A10p02680' => 'bna', 'A10p05320' => 'bna', 'Aa31LG1G20560' => 'aar', 'Aa31LG1G20610' => 'aar', 'Aa31LG1G7810' => 'aar', 'Aa31LG5G3590' => 'aar', 'Aa31LG5G6140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3819' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4683' => 'aag', 'Actinidia04480' => 'ach', 'Actinidia05466' => 'ach', 'Actinidia08445' => 'ach', 'Actinidia21170' => 'ach', 'Actinidia24812' => 'ach', 'Actinidia24951' => 'ach', 'Actinidia40088' => 'ach', 'Ah.02g111660' => 'amhyb', 'Ah.11g048900' => 'amhyb', 'Ah.11g049910' => 'amhyb', 'AL1G13870' => 'aly', 'AL1G13880' => 'aly', 'AL1G16760' => 'aly', 'AL390U10020' => 'aly', 'AL4G25520' => 'aly', 'AL6G19890' => 'aly', 'AL6G19900' => 'aly', 'AL6G19910' => 'aly', 'AL8G40100' => 'aly', 'Aqoxy2G03562' => 'aox', 'Aqoxy5G00316' => 'aox', 'Aqoxy5G00926' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1628KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1H403S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2FU6SJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.882I6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8YRY2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YN1SN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AF70II' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZA8L1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F916KL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHRD8H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KTZ8QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S22EMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8M29T' => 'arhy', 'AT1G04270' => 'ath', 'AT1G04280' => 'ath', 'AT1G06750' => 'ath', 'AT1G33850' => 'ath', 'AT2G30630' => 'ath', 'AT5G09490' => 'ath', 'AT5G09500' => 'ath', 'AT5G09510' => 'ath', 'AT5G43640' => 'ath', 'AT5G63070' => 'ath', 'ATR0605G315' => 'atr', 'Atru.chr11.175' => 'acertr', 'Atru.chr11.653' => 'acertr', 'Atru.chr3.1616' => 'acertr', 'Atru.chr4.2230' => 'acertr', 'Atru.chr4.2232' => 'acertr', 'Atru.chr5.1598' => 'acertr', 'Atru.chr5.1600' => 'acertr', 'Atru.chr5.2188' => 'acertr', 'AUR62008326' => 'cqu', 'AUR62011922' => 'cqu', 'AUR62011924' => 'cqu', 'AUR62021771' => 'cqu', 'AUR62032237' => 'cqu', 'AUR62032240' => 'cqu', 'BcaB01g05572' => 'bca', 'BcaB02g10337' => 'bca', 'BcaB04g19944' => 'bca', 'BcaB05g21548' => 'bca', 'BcaB05g21549' => 'bca', 'BcaB05g23227' => 'bca', 'BcaB06g26256' => 'bca', 'BcaB06g26257' => 'bca', 'BcaB06g28379' => 'bca', 'BcaC02g11159' => 'bca', 'BcaC03g13258' => 'bca', 'BcaC03g13259' => 'bca', 'BcaC05g24456' => 'bca', 'BcaC05g24457' => 'bca', 'BcaC07g36922' => 'bca', 'BcaC07g36923' => 'bca', 'BcaC07g42050' => 'bca', 'BcaC07g42176' => 'bca', 'BcaC07g42195' => 'bca', 'BcaC07g42196' => 'bca', 'BcaNung06674' => 'bca', 'BolC2t06351H' => 'bol', 'BolC2t06352H' => 'bol', 'BolC3t12993H' => 'bol', 'BolC4t23525H' => 'bol', 'BolC4t27475H' => 'bol', 'BolC5t29025H' => 'bol', 'BolC5t29026H' => 'bol', 'BolC8t46898H' => 'bol', 'BolC8t46899H' => 'bol', 'BolC8t52630H' => 'bol', 'BolC8t52765H' => 'bol', 'BolC9t53824H' => 'bol', 'BraA03t09760Z' => 'bra', 'BraA03t10990Z' => 'bra', 'BraA05t20413Z' => 'bra', 'BraA08t35602Z' => 'bra', 'BraA09t36458Z' => 'bra', 'BraA09t42018Z' => 'bra', 'BraA09t42129Z' => 'bra', 'BraA10t42536Z' => 'bra', 'BraA10t42537Z' => 'bra', 'C01p10690' => 'bna', 'C02p03890' => 'bna', 'C02p03900' => 'bna', 'C03p04620' => 'bna', 'C04p19870' => 'bna', 'C04p59670' => 'bna', 'C05p02460' => 'bna', 'C05p02470' => 'bna', 'C08p00980' => 'bna', 'C08p00990' => 'bna', 'C08p51030' => 'bna', 'C08p52360' => 'bna', 'C09p09120' => 'bna', 'CAN.G19.15' => 'can', 'CAN.G251.10' => 'can', 'CAN.G251.9' => 'can', 'CAN.G398.24' => 'can', 'CAN.G410.32' => 'can', 'CAN.G881.2' => 'can', 'CANSAT01G3025' => 'cansat', 'CANSAT78G1211' => 'cansat', 'CANSAT78G1218' => 'cansat', 'CANSAT78G1521' => 'cansat', 'CANSAT78G1670' => 'cansat', 'CARHR003600' => 'chi', 'CARHR003610' => 'chi', 'CARHR006290' => 'chi', 'CARHR006430' => 'chi', 'CARHR124110' => 'chi', 'CARHR203870' => 'chi', 'CARHR203880' => 'chi', 'CARHR203890' => 'chi', 'CARHR276880' => 'chi', 'Carub.0001s0346' => 'cru', 'Carub.0001s0347' => 'cru', 'Carub.0001s0607' => 'cru', 'Carub.0003s2768' => 'cru', 'Carub.0003s2769' => 'cru', 'Carub.0004s1178' => 'cru', 'Carub.0006s0806' => 'cru', 'Carub.0006s0807' => 'cru', 'Carub.0006s0808' => 'cru', 'Carub.0008s0501' => 'cru', 'Carub.0008s2379' => 'cru', 'Ca_08655_v3' => 'car', 'Ca_08922_v3' => 'car', 'Ca_08923_v3' => 'car', 'Ca_09119_v3' => 'car', 'Ca_09703_v3' => 'car', 'Ca_09705_v3' => 'car', 'Ca_09835_v3' => 'car', 'Ca_26403_v3' => 'car', 'Ca_30719_v3' => 'car', 'CBR_g17958' => 'cbr', 'CBR_g40516' => 'cbr', 'Cc00_g05350' => 'ccan', 'Cc01_g18690' => 'ccan', 'Cc03_g04830' => 'ccan', 'Cc03_g04850' => 'ccan', 'CDE02G4469' => 'cde', 'CDE06G0883' => 'cde', 'CDE06G1295' => 'cde', 'CDE06G1390' => 'cde', 'CDE07G0584' => 'cde', 'CDE07G1084' => 'cde', 'CDE08G1259' => 'cde', 'Cfa002341' => 'cfa', 'Cfa024337' => 'cfa', 'Ciclev10004749m.g' => 'ccl', 'Ciclev10006127m.g' => 'ccl', 'Ciclev10019720m.g' => 'ccl', 'Ciclev10022652m.g' => 'ccl', 'CiPaw.01G190400' => 'cil', 'CiPaw.01G190500' => 'cil', 'CiPaw.02G116400' => 'cil', 'CiPaw.02G116500' => 'cil', 'CiPaw.04G183000' => 'cil', 'CiPaw.04G183300' => 'cil', 'ClCG05G004610' => 'cla', 'ClCG05G004620' => 'cla', 'ClCG06G006730' => 'cla', 'ClCG06G006740' => 'cla', 'ClCG11G003690' => 'cla', 'COL.COLO4_08276' => 'col', 'COL.COLO4_08277' => 'col', 'COL.COLO4_15787' => 'col', 'COL.COLO4_15789' => 'col', 'Cpa.g.c44815' => 'cpa', 'Cpa.g.sc52.144' => 'cpa', 'Cpa.g.sc58.46' => 'cpa', 'Cpa.g.sc58.47' => 'cpa', 'Cre08.g360900' => 'cre', 'CsaV3_2G013030' => 'csa', 'CsaV3_2G013050' => 'csa', 'CsaV3_2G015620' => 'csa', 'CsaV3_3G012590' => 'csa', 'CsaV3_3G012600' => 'csa', 'CSS0001641' => 'camsi', 'CSS0008310' => 'camsi', 'CSS0013011' => 'camsi', 'CSS0017147' => 'camsi', 'CSS0022970' => 'camsi', 'CSS0025655' => 'camsi', 'CSS0028665' => 'camsi', 'CSS0029117' => 'camsi', 'CSS0032024' => 'camsi', 'CSS0039681' => 'camsi', 'CSS0046516' => 'camsi', 'CSS0050307' => 'camsi', 'DCAR_005871' => 'dca', 'DCAR_007342' => 'dca', 'DCAR_024228' => 'dca', 'DCAR_027277' => 'dca', 'DCAR_030718' => 'dca', 'Dinv20287' => 'din', 'Dinv22461' => 'din', 'Dinv22464' => 'din', 'Dinv29912' => 'din', 'Dinv29913' => 'din', 'Dinv34580' => 'din', 'Dinv34582' => 'din', 'Dinv44632' => 'din', 'Duzib052G0266' => 'dzi', 'Duzib133G0907' => 'dzi', 'Duzib133G1034' => 'dzi', 'Duzib138G0207' => 'dzi', 'Duzib138G0491' => 'dzi', 'Duzib151G0812' => 'dzi', 'Duzib151G1166' => 'dzi', 'Duzib168G0192' => 'dzi', 'Duzib211G0077' => 'dzi', 'Duzib212G0429' => 'dzi', 'Duzib212G0472' => 'dzi', 'ECA233G2617' => 'eca', 'ECA236G4188' => 'eca', 'ECA240G0936' => 'eca', 'ECA240G1129' => 'eca', 'ECA247G0623' => 'eca', 'EL10Ac5g10451' => 'bvu', 'EL10Ac5g10453' => 'bvu', 'EL10Ac5g10894' => 'bvu', 'Eucgr.H00192' => 'egr', 'Eucgr.H00193' => 'egr', 'Eucgr.H00194' => 'egr', 'Eucgr.J01562' => 'egr', 'Eucgr.K03301' => 'egr', 'FAN02G0632' => 'fan', 'FAN05G5378' => 'fan', 'FAN09G3247' => 'fan', 'FAN12G0435' => 'fan', 'FAN12G2426' => 'fan', 'FAN14G1707' => 'fan', 'FAN14G4725' => 'fan', 'FAN15G2071' => 'fan', 'FAN17G3065' => 'fan', 'FAN19G1376' => 'fan', 'FAN20G0354' => 'fan', 'FAN20G2429' => 'fan', 'FAN20G2658' => 'fan', 'FAN24G2343' => 'fan', 'FAN27G2362' => 'fan', 'FAN28G1765' => 'fan', 'FvH4_1g16020' => 'fve', 'FvH4_2g04890' => 'fve', 'FvH4_2g22270' => 'fve', 'FvH4_4g02630' => 'fve', 'FvH4_4g02640' => 'fve', 'FvH4_6g02650' => 'fve', 'Glyma.02G140600' => 'gma', 'Glyma.03G159900' => 'gma', 'Glyma.05G234800' => 'gma', 'Glyma.07G269600' => 'gma', 'Glyma.08G042300' => 'gma', 'Glyma.10G033500' => 'gma', 'Glyma.10G185200' => 'gma', 'Glyma.17G004300' => 'gma', 'Glyma.19G161900' => 'gma', 'Glyma.20G205100' => 'gma', 'Glyma.20G205200' => 'gma', 'Gohir.A01G139101' => 'ghi', 'Gohir.A02G035600' => 'ghi', 'Gohir.A02G117901' => 'ghi', 'Gohir.A07G210100' => 'ghi', 'Gohir.A07G210200' => 'ghi', 'Gohir.A08G061100' => 'ghi', 'Gohir.A09G223000' => 'ghi', 'Gohir.A09G223100' => 'ghi', 'Gohir.A10G113900' => 'ghi', 'Gohir.A10G114000' => 'ghi', 'Gohir.D02G042300' => 'ghi', 'Gohir.D07G216100' => 'ghi', 'Gohir.D07G216200' => 'ghi', 'Gohir.D08G070400' => 'ghi', 'Gohir.D09G225000' => 'ghi', 'Gohir.D09G225100' => 'ghi', 'Gohir.D10G152300' => 'ghi', 'Gohir.D10G153200' => 'ghi', 'Gohir.D11G133701' => 'ghi', 'Gorai.004G074100' => 'gra', 'Gorai.005G046800' => 'gra', 'Gorai.006G246500' => 'gra', 'Gorai.006G246600' => 'gra', 'Gorai.007G142900' => 'gra', 'Gorai.011G171000' => 'gra', 'Gorai.011G171100' => 'gra', 'Gorai.013G104300' => 'gra', 'Gorai.013G104400' => 'gra', 'GSVIVG01000754001' => 'vvi', 'GSVIVG01000756001' => 'vvi', 'GSVIVG01010903001' => 'vvi', 'GSVIVG01017623001' => 'vvi', 'GSVIVG01018113001' => 'vvi', 'GSVIVG01018116001' => 'vvi', 'GSVIVG01018118001' => 'vvi', 'HanXRQChr03g0076211' => 'han', 'HanXRQChr03g0092431' => 'han', 'HanXRQChr03g0092441' => 'han', 'HanXRQChr03g0092591' => 'han', 'HanXRQChr03g0092671' => 'han', 'HanXRQChr03g0092681' => 'han', 'HanXRQChr03g0092691' => 'han', 'HanXRQChr03g0092701' => 'han', 'HanXRQChr03g0092721' => 'han', 'HanXRQChr03g0092731' => 'han', 'HanXRQChr04g0113681' => 'han', 'HanXRQChr10g0281371' => 'han', 'HanXRQChr11g0337141' => 'han', 'HanXRQChr13g0424521' => 'han', 'HanXRQChr13g0424531' => 'han', 'HanXRQChr13g0424541' => 'han', 'HanXRQChr16g0498221' => 'han', 'Haze_04377' => 'cav', 'Haze_11298' => 'cav', 'Haze_24547' => 'cav', 'Haze_24550' => 'cav', 'Haze_26587' => 'cav', 'Hma1.2p1_0650F.1_g195410' => 'hma', 'Hma1.2p1_0893F.1_g233470' => 'hma', 'HPP92_006508' => 'vpl', 'HPP92_024780' => 'vpl', 'Hund02688' => 'sun', 'Hund09380' => 'sun', 'Hund09381' => 'sun', 'Hund09832' => 'sun', 'Hund09833' => 'sun', 'Hund11351' => 'sun', 'Hund11513' => 'sun', 'Lalb_Chr06g0162591' => 'lal', 'Lalb_Chr06g0162601' => 'lal', 'Lalb_Chr06g0169321' => 'lal', 'Lalb_Chr09g0330951' => 'lal', 'Lalb_Chr16g0387631' => 'lal', 'Lalb_Chr21g0306241' => 'lal', 'Lalb_Chr25g0290051' => 'lal', 'Lalb_Chr25g0290061' => 'lal', 'Lalb_Chr25g0290071' => 'lal', 'Lj1g0003876' => 'lja', 'Lj1P1207T36' => 'lonja', 'Lj2C1156G12' => 'lonja', 'Lj3A793G39' => 'lonja', 'Lj3C580G2' => 'lonja', 'Lj3C780G2' => 'lonja', 'Lj3C780T4' => 'lonja', 'Lj3C793G9' => 'lonja', 'Lj4g0012960' => 'lja', 'Lj5g0021252' => 'lja', 'Lj5g0021484' => 'lja', 'Lj5g0024528' => 'lja', 'Lj6A399T12' => 'lonja', 'Lj6A656G65' => 'lonja', 'Lsat_1_v5_gn_3_125500' => 'lsa', 'Lsat_1_v5_gn_3_125540' => 'lsa', 'Lsat_1_v5_gn_5_72701' => 'lsa', 'Lsat_1_v5_gn_8_91560' => 'lsa', 'Lsat_1_v5_gn_9_9640' => 'lsa', 'Manes.01G200600' => 'mes', 'Manes.01G200700' => 'mes', 'Manes.03G168900' => 'mes', 'Manes.03G169000' => 'mes', 'Manes.05G085801' => 'mes', 'Manes.05G086200' => 'mes', 'Manes.15G036700' => 'mes', 'Manes.15G036900' => 'mes', 'Mapoly0004s0172' => 'mpo', 'Mapoly0023s0001' => 'mpo', 'Mapoly0142s0012' => 'mpo', 'MBI01_g32854_MAGBIO' => 'mbi', 'MBI11_g24427_MAGBIO' => 'mbi', 'MBI11_g47319_MAGBIO' => 'mbi', 'MCO01G433' => 'mco', 'MD00G1187800' => 'mdo', 'MD04G1226500' => 'mdo', 'MD05G1203900' => 'mdo', 'MD10G1191100' => 'mdo', 'MD12G1243500' => 'mdo', 'MD13G1207000' => 'mdo', 'MD13G1207100' => 'mdo', 'MD16G1208600' => 'mdo', 'Medtr1g050352' => 'mtr', 'Medtr1g070385' => 'mtr', 'Medtr1g070450' => 'mtr', 'Medtr1g075200' => 'mtr', 'Medtr1g075250' => 'mtr', 'Medtr1g075260' => 'mtr', 'Medtr1g475250' => 'mtr', 'Medtr4g075450' => 'mtr', 'Medtr7g096300' => 'mtr', 'Medtr8g105110' => 'mtr', 'MELO3C006470.2' => 'cme', 'MELO3C006471.2' => 'cme', 'MELO3C020772.2' => 'cme', 'MELO3C026780.2' => 'cme', 'MELO3C026781.2' => 'cme', 'Migut.D00390' => 'egut', 'Migut.G00435' => 'egut', 'Migut.G00436' => 'egut', 'Migut.G00718' => 'egut', 'MSTRG.21891' => 'ama', 'MSTRG.26910' => 'ama', 'MSTRG.4099' => 'ama', 'MSTRG.9925' => 'ama', 'Nitab4.5_0000165g0010' => 'nta', 'Nitab4.5_0000209g0180' => 'nta', 'Nitab4.5_0000244g0440' => 'nta', 'Nitab4.5_0000525g0220' => 'nta', 'Nitab4.5_0001597g0020' => 'nta', 'Nitab4.5_0001878g0040' => 'nta', 'Nitab4.5_0001878g0060' => 'nta', 'Nitab4.5_0002838g0100' => 'nta', 'Nitab4.5_0002838g0120' => 'nta', 'Nitab4.5_0004798g0030' => 'nta', 'Nitab4.5_0005420g0010' => 'nta', 'Nitab4.5_0005507g0010' => 'nta', 'Nitab4.5_0005574g0020' => 'nta', 'Nitab4.5_0005838g0010' => 'nta', 'Nitab4.5_0010580g0020' => 'nta', 'Nn1g02599' => 'nnu', 'Nn1g02608' => 'nnu', 'Nn3g17742' => 'nnu', 'Nn3g19534' => 'nnu', 'Nn3g19535' => 'nnu', 'Oeu008790.1' => 'oeu', 'Oeu008792.1' => 'oeu', 'Oeu032590.1' => 'oeu', 'Oeu035349.1' => 'oeu', 'Oeu049791.1' => 'oeu', 'Os01g0774500' => 'osa', 'Os03g0628800' => 'osa', 'Os03g0798600' => 'osa', 'Os05g0508800' => 'osa', 'Peaxi162Scf00036g02018' => 'pax', 'Peaxi162Scf00578g00032' => 'pax', 'Peaxi162Scf00578g00317' => 'pax', 'Peaxi162Scf00785g00114' => 'pax', 'Peaxi162Scf00813g00119' => 'pax', 'Peaxi162Scf00906g00227' => 'pax', 'PGR004G0875' => 'pgr', 'PGR004G2424' => 'pgr', 'PGR031G1239' => 'pgr', 'PGR031G2474' => 'pgr', 'PGR044G0423' => 'pgr', 'PGSC0003DMG400001128' => 'stu', 'PGSC0003DMG400007336' => 'stu', 'PGSC0003DMG400016318' => 'stu', 'PGSC0003DMG400016319' => 'stu', 'PGSC0003DMG400018074' => 'stu', 'Phvul.001G157700' => 'pvu', 'Phvul.002G148550' => 'pvu', 'Phvul.002G320200' => 'pvu', 'Phvul.003G089200' => 'pvu', 'Phvul.007G126000' => 'pvu', 'Phvul.007G126100' => 'pvu', 'Phvul.007G178000' => 'pvu', 'Phvul.007G178200' => 'pvu', 'Potri.002G043000' => 'ptr', 'Potri.002G043200' => 'ptr', 'Potri.003G123750' => 'ptr', 'Potri.005G055401' => 'ptr', 'Potri.005G219700' => 'ptr', 'Potri.005G220000' => 'ptr', 'Potri.008G161901' => 'ptr', 'Potri.008G162000' => 'ptr', 'Potri.008G162400' => 'ptr', 'Potri.010G076900' => 'ptr', 'Pp3c12_9180' => 'ppa', 'Pp3c13_19770' => 'ppa', 'Pp3c14_22950' => 'ppa', 'Pp3c16_12160' => 'ppa', 'Pp3c27_7820' => 'ppa', 'Pp3c2_3490' => 'ppa', 'Pp3c3_23700' => 'ppa', 'Pp3c3_36520' => 'ppa', 'Pp3c4_15250' => 'ppa', 'PRCOL_00007002' => 'pco', 'Prupe.1G030600' => 'ppe', 'Prupe.1G030700' => 'ppe', 'Prupe.6G345200' => 'ppe', 'Prupe.8G230300' => 'ppe', 'Prupe.8G230500' => 'ppe', 'Psat3g059600' => 'psa', 'Psat5g200920' => 'psa', 'Psat6g056440' => 'psa', 'Psat6g057360' => 'psa', 'Psat6g134120' => 'psa', 'Psat6g134160' => 'psa', 'Psat7g008640' => 'psa', 'Psat7g185240' => 'psa', 'PSO017G1330' => 'pso', 'PSO063G6097' => 'pso', 'PSO170G0835' => 'pso', 'PSO170G2499' => 'pso', 'PSO210G5058' => 'pso', 'PSO210G6154' => 'pso', 'PSO585G0031' => 'pso', 'PSO832G0264' => 'pso', 'PSO832G4288' => 'pso', 'QL03p027355' => 'qlo', 'QL03p027430' => 'qlo', 'QL04p081380' => 'qlo', 'QL06p015642' => 'qlo', 'QL06p015650' => 'qlo', 'QL06p015686' => 'qlo', 'QL12p042927' => 'qlo', 'QL93p1863_0035' => 'qlo', 'RcHm_v2.0_Chr3g0450581' => 'rch', 'RcHm_v2.0_Chr4g0390371' => 'rch', 'RcHm_v2.0_Chr4g0390381' => 'rch', 'RcHm_v2.0_Chr4g0390491' => 'rch', 'RcHm_v2.0_Chr4g0390501' => 'rch', 'RcHm_v2.0_Chr6g0289231' => 'rch', 'Rhsim04G0190400' => 'rsi', 'Rhsim04G0190500' => 'rsi', 'Rhsim04G0190600' => 'rsi', 'Rhsim13G0031400' => 'rsi', 'Rhsim13G0165600' => 'rsi', 'RhsimUnG0114600' => 'rsi', 'RhsimUnG0114700' => 'rsi', 'Sabra02G0034800' => 'sbr', 'Sabra02G0035100' => 'sbr', 'Sabra05G0168600' => 'sbr', 'Sabra05G0168800' => 'sbr', 'Sabra08G0123700' => 'sbr', 'Sabra10G0031900' => 'sbr', 'Sabra13G0039000' => 'sbr', 'SalBow2G0782' => 'sbo', 'SalBow2G1403' => 'sbo', 'SalBow4G0074' => 'sbo', 'SalBow4G2635' => 'sbo', 'SalBow5G3010' => 'sbo', 'Sc05g0000870' => 'sci', 'Sc05g0000890' => 'sci', 'Sc13g0005000' => 'sci', 'Sc13g0005030' => 'sci', 'Sc19g0003790' => 'sci', 'Sc19g0003800' => 'sci', 'Sed0003467' => 'sed', 'Sed0009355' => 'sed', 'Sed0009894' => 'sed', 'Sed0011972' => 'sed', 'Sed0021483' => 'sed', 'Sed0021750' => 'sed', 'Sed0026279' => 'sed', 'SEGI_05312' => 'sgi', 'SEGI_10112' => 'sgi', 'SEGI_15835' => 'sgi', 'SEGI_30386' => 'sgi', 'SEGI_34122' => 'sgi', 'SEGI_35063' => 'sgi', 'SGA_v2.0_scaffold101G29794' => 'sas', 'SGA_v2.0_scaffold1G00573' => 'sas', 'SGA_v2.0_scaffold79G25637' => 'sas', 'SGA_v2.0_scaffold88G27283' => 'sas', 'SGA_v2.0_scaffold88G27285' => 'sas', 'SGA_v2.0_scaffold88G27331' => 'sas', 'SHI09937' => 'shi', 'SMO119G0302' => 'smo', 'SMO137G0231' => 'smo', 'SMO367G1151' => 'smo', 'Solyc02g082000.3' => 'sly', 'Solyc06g031670.3' => 'sly', 'Solyc06g053810.3' => 'sly', 'Solyc07g025457.1' => 'sly', 'Solyc08g059740.1' => 'sly', 'Solyc08g059750.3' => 'sly', 'Solyc09g083370.3' => 'sly', 'Solyc12g038950.3' => 'sly', 'Sopen02g026630' => 'spe', 'Sopen06g018930' => 'spe', 'Sopen06g018940' => 'spe', 'Sopen08g009460' => 'spe', 'Sopen09g032290' => 'spe', 'Sp1g03080' => 'spa', 'Sp1g03090' => 'spa', 'Sp1g05480' => 'spa', 'Sp2g07860' => 'spa', 'Sp2g08430' => 'spa', 'Sp2g08440' => 'spa', 'Sp2g26200' => 'spa', 'Sp4g13170' => 'spa', 'Sp6g33840' => 'spa', 'SpUn1204_0010' => 'spa', 'TAR365G0908' => 'tar', 'TAR381G1270' => 'tar', 'TAR381G1651' => 'tar', 'TAR625G1131' => 'tar', 'TAR633G0962' => 'tar', 'TAR633G1729' => 'tar', 'TAR633G1864' => 'tar', 'TAR636G0221' => 'tar', 'TAR636G0314' => 'tar', 'TAR636G3202' => 'tar', 'THA.LOC104800805' => 'tha', 'THA.LOC104801096' => 'tha', 'THA.LOC104801555' => 'tha', 'THA.LOC104808491' => 'tha', 'THA.LOC104808595' => 'tha', 'THA.LOC104815985' => 'tha', 'THA.LOC104822250' => 'tha', 'THA.LOC104826071' => 'tha', 'Thecc.01G265200' => 'tca', 'Thecc.01G265300' => 'tca', 'Thecc.01G265700' => 'tca', 'Thecc.03G109100' => 'tca', 'Thecc.04G245900' => 'tca', 'Thecc.04G246000' => 'tca', 'Thhalv10003334m.g' => 'esa', 'Thhalv10005508m.g' => 'esa', 'Thhalv10005643m.g' => 'esa', 'Thhalv10007316m.g' => 'esa', 'Thhalv10009006m.g' => 'esa', 'Thhalv10009309m.g' => 'esa', 'Thhalv10014917m.g' => 'esa', 'Thhalv10014919m.g' => 'esa', 'Thhalv10015393m.g' => 'esa', 'Thhalv10016515m.g' => 'esa', 'Thhalv10029242m.g' => 'esa', 'TPR.G16654' => 'tpr', 'TPR.G20589' => 'tpr', 'TPR.G23029' => 'tpr', 'TPR.G27731' => 'tpr', 'TPR.G28889' => 'tpr', 'TPR.G28899' => 'tpr', 'TPR.G30846' => 'tpr', 'TPR.G5452' => 'tpr', 'TPR.G5713' => 'tpr', 'TPR.G9046' => 'tpr', 'TPR.G9061' => 'tpr', 'TWI09G1075' => 'twi', 'TWI12G0806' => 'twi', 'TWI18G0108' => 'twi', 'TWI53G1361' => 'twi', 'TWI73G0185' => 'twi', 'TWI73G0427' => 'twi', 'unitig_37.g12001' => 'ugi', 'unitig_747.g21660' => 'ugi', 'unitig_748.g7232' => 'ugi', 'unitig_748.g7315' => 'ugi', 'unitig_85.g27262' => 'ugi', 'unitig_92.g28220' => 'ugi', 'vmacro02632' => 'vma', 'vmacro08410' => 'vma', 'vmacro08411' => 'vma', 'vmacro15407' => 'vma', 'VMungo0251G3619' => 'vmu', 'VMungo0720G1204' => 'vmu', 'VMungo0720G1918' => 'vmu', 'VMungo0720G2387' => 'vmu', 'VMungo0720G2961' => 'vmu', 'VMungo1215G2154' => 'vmu', 'VMungo1383G2411' => 'vmu', 'Zm00001eb051130' => 'zma', 'Zm00001eb116830' => 'zma', 'Zm00001eb116850' => 'zma', 'Zm00001eb151740' => 'zma', 'Zm00001eb292360' => 'zma', 'Zm00001eb301640' => 'zma' ) $gf_id = 'HOM05D000856' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000856' ) $data_identifier = 'HOM05D000856' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 13, 'ath' => (int) 10, 'atr' => (int) 1, 'acertr' => (int) 8, 'cqu' => (int) 6, 'bca' => (int) 21, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 11, 'car' => (int) 9, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 8, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 5, 'fan' => (int) 16, 'fve' => (int) 6, 'gma' => (int) 11, 'ghi' => (int) 19, 'gra' => (int) 9, 'vvi' => (int) 7, 'han' => (int) 17, 'cav' => (int) 5, 'hma' => (int) 2, 'vpl' => (int) 2, 'sun' => (int) 7, 'lal' => (int) 9, 'lja' => (int) 5, 'lonja' => (int) 9, 'lsa' => (int) 5, 'mes' => (int) 8, 'mpo' => (int) 3, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 10, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 15, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 9, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 9, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 6, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 5, 'spa' => (int) 10, 'tar' => (int) 10, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 11, 'tpr' => (int) 11, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 4, 'vmu' => (int) 7, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb301640' $species_info = array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ) $local_species = 'col' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000856', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p00010' => 'bna', 'A03p04160' => 'bna', 'A03p17160' => 'bna', 'A04p23370' => 'bna', 'A05p14860' => 'bna', 'A08p37020' => 'bna', 'A09p08050' => 'bna', 'A09p66800' => 'bna', 'A09p67940' => 'bna', 'A10p02680' => 'bna', 'A10p05320' => 'bna', 'Aa31LG1G20560' => 'aar', 'Aa31LG1G20610' => 'aar', 'Aa31LG1G7810' => 'aar', 'Aa31LG5G3590' => 'aar', 'Aa31LG5G6140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3819' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4683' => 'aag', 'Actinidia04480' => 'ach', 'Actinidia05466' => 'ach', 'Actinidia08445' => 'ach', 'Actinidia21170' => 'ach', 'Actinidia24812' => 'ach', 'Actinidia24951' => 'ach', 'Actinidia40088' => 'ach', 'Ah.02g111660' => 'amhyb', 'Ah.11g048900' => 'amhyb', 'Ah.11g049910' => 'amhyb', 'AL1G13870' => 'aly', 'AL1G13880' => 'aly', 'AL1G16760' => 'aly', 'AL390U10020' => 'aly', 'AL4G25520' => 'aly', 'AL6G19890' => 'aly', 'AL6G19900' => 'aly', 'AL6G19910' => 'aly', 'AL8G40100' => 'aly', 'Aqoxy2G03562' => 'aox', 'Aqoxy5G00316' => 'aox', 'Aqoxy5G00926' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1628KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1H403S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2FU6SJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.882I6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8YRY2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YN1SN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AF70II' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZA8L1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F916KL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHRD8H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KTZ8QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S22EMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8M29T' => 'arhy', 'AT1G04270' => 'ath', 'AT1G04280' => 'ath', 'AT1G06750' => 'ath', 'AT1G33850' => 'ath', 'AT2G30630' => 'ath', 'AT5G09490' => 'ath', 'AT5G09500' => 'ath', 'AT5G09510' => 'ath', 'AT5G43640' => 'ath', 'AT5G63070' => 'ath', 'ATR0605G315' => 'atr', 'Atru.chr11.175' => 'acertr', 'Atru.chr11.653' => 'acertr', 'Atru.chr3.1616' => 'acertr', 'Atru.chr4.2230' => 'acertr', 'Atru.chr4.2232' => 'acertr', 'Atru.chr5.1598' => 'acertr', 'Atru.chr5.1600' => 'acertr', 'Atru.chr5.2188' => 'acertr', 'AUR62008326' => 'cqu', 'AUR62011922' => 'cqu', 'AUR62011924' => 'cqu', 'AUR62021771' => 'cqu', 'AUR62032237' => 'cqu', 'AUR62032240' => 'cqu', 'BcaB01g05572' => 'bca', 'BcaB02g10337' => 'bca', 'BcaB04g19944' => 'bca', 'BcaB05g21548' => 'bca', 'BcaB05g21549' => 'bca', 'BcaB05g23227' => 'bca', 'BcaB06g26256' => 'bca', 'BcaB06g26257' => 'bca', 'BcaB06g28379' => 'bca', 'BcaC02g11159' => 'bca', 'BcaC03g13258' => 'bca', 'BcaC03g13259' => 'bca', 'BcaC05g24456' => 'bca', 'BcaC05g24457' => 'bca', 'BcaC07g36922' => 'bca', 'BcaC07g36923' => 'bca', 'BcaC07g42050' => 'bca', 'BcaC07g42176' => 'bca', 'BcaC07g42195' => 'bca', 'BcaC07g42196' => 'bca', 'BcaNung06674' => 'bca', 'BolC2t06351H' => 'bol', 'BolC2t06352H' => 'bol', 'BolC3t12993H' => 'bol', 'BolC4t23525H' => 'bol', 'BolC4t27475H' => 'bol', 'BolC5t29025H' => 'bol', 'BolC5t29026H' => 'bol', 'BolC8t46898H' => 'bol', 'BolC8t46899H' => 'bol', 'BolC8t52630H' => 'bol', 'BolC8t52765H' => 'bol', 'BolC9t53824H' => 'bol', 'BraA03t09760Z' => 'bra', 'BraA03t10990Z' => 'bra', 'BraA05t20413Z' => 'bra', 'BraA08t35602Z' => 'bra', 'BraA09t36458Z' => 'bra', 'BraA09t42018Z' => 'bra', 'BraA09t42129Z' => 'bra', 'BraA10t42536Z' => 'bra', 'BraA10t42537Z' => 'bra', 'C01p10690' => 'bna', 'C02p03890' => 'bna', 'C02p03900' => 'bna', 'C03p04620' => 'bna', 'C04p19870' => 'bna', 'C04p59670' => 'bna', 'C05p02460' => 'bna', 'C05p02470' => 'bna', 'C08p00980' => 'bna', 'C08p00990' => 'bna', 'C08p51030' => 'bna', 'C08p52360' => 'bna', 'C09p09120' => 'bna', 'CAN.G19.15' => 'can', 'CAN.G251.10' => 'can', 'CAN.G251.9' => 'can', 'CAN.G398.24' => 'can', 'CAN.G410.32' => 'can', 'CAN.G881.2' => 'can', 'CANSAT01G3025' => 'cansat', 'CANSAT78G1211' => 'cansat', 'CANSAT78G1218' => 'cansat', 'CANSAT78G1521' => 'cansat', 'CANSAT78G1670' => 'cansat', 'CARHR003600' => 'chi', 'CARHR003610' => 'chi', 'CARHR006290' => 'chi', 'CARHR006430' => 'chi', 'CARHR124110' => 'chi', 'CARHR203870' => 'chi', 'CARHR203880' => 'chi', 'CARHR203890' => 'chi', 'CARHR276880' => 'chi', 'Carub.0001s0346' => 'cru', 'Carub.0001s0347' => 'cru', 'Carub.0001s0607' => 'cru', 'Carub.0003s2768' => 'cru', 'Carub.0003s2769' => 'cru', 'Carub.0004s1178' => 'cru', 'Carub.0006s0806' => 'cru', 'Carub.0006s0807' => 'cru', 'Carub.0006s0808' => 'cru', 'Carub.0008s0501' => 'cru', 'Carub.0008s2379' => 'cru', 'Ca_08655_v3' => 'car', 'Ca_08922_v3' => 'car', 'Ca_08923_v3' => 'car', 'Ca_09119_v3' => 'car', 'Ca_09703_v3' => 'car', 'Ca_09705_v3' => 'car', 'Ca_09835_v3' => 'car', 'Ca_26403_v3' => 'car', 'Ca_30719_v3' => 'car', 'CBR_g17958' => 'cbr', 'CBR_g40516' => 'cbr', 'Cc00_g05350' => 'ccan', 'Cc01_g18690' => 'ccan', 'Cc03_g04830' => 'ccan', 'Cc03_g04850' => 'ccan', 'CDE02G4469' => 'cde', 'CDE06G0883' => 'cde', 'CDE06G1295' => 'cde', 'CDE06G1390' => 'cde', 'CDE07G0584' => 'cde', 'CDE07G1084' => 'cde', 'CDE08G1259' => 'cde', 'Cfa002341' => 'cfa', 'Cfa024337' => 'cfa', 'Ciclev10004749m.g' => 'ccl', 'Ciclev10006127m.g' => 'ccl', 'Ciclev10019720m.g' => 'ccl', 'Ciclev10022652m.g' => 'ccl', 'CiPaw.01G190400' => 'cil', 'CiPaw.01G190500' => 'cil', 'CiPaw.02G116400' => 'cil', 'CiPaw.02G116500' => 'cil', 'CiPaw.04G183000' => 'cil', 'CiPaw.04G183300' => 'cil', 'ClCG05G004610' => 'cla', 'ClCG05G004620' => 'cla', 'ClCG06G006730' => 'cla', 'ClCG06G006740' => 'cla', 'ClCG11G003690' => 'cla', 'COL.COLO4_08276' => 'col', 'COL.COLO4_08277' => 'col', 'COL.COLO4_15787' => 'col', 'COL.COLO4_15789' => 'col', 'Cpa.g.c44815' => 'cpa', 'Cpa.g.sc52.144' => 'cpa', 'Cpa.g.sc58.46' => 'cpa', 'Cpa.g.sc58.47' => 'cpa', 'Cre08.g360900' => 'cre', 'CsaV3_2G013030' => 'csa', 'CsaV3_2G013050' => 'csa', 'CsaV3_2G015620' => 'csa', 'CsaV3_3G012590' => 'csa', 'CsaV3_3G012600' => 'csa', 'CSS0001641' => 'camsi', 'CSS0008310' => 'camsi', 'CSS0013011' => 'camsi', 'CSS0017147' => 'camsi', 'CSS0022970' => 'camsi', 'CSS0025655' => 'camsi', 'CSS0028665' => 'camsi', 'CSS0029117' => 'camsi', 'CSS0032024' => 'camsi', 'CSS0039681' => 'camsi', 'CSS0046516' => 'camsi', 'CSS0050307' => 'camsi', 'DCAR_005871' => 'dca', 'DCAR_007342' => 'dca', 'DCAR_024228' => 'dca', 'DCAR_027277' => 'dca', 'DCAR_030718' => 'dca', 'Dinv20287' => 'din', 'Dinv22461' => 'din', 'Dinv22464' => 'din', 'Dinv29912' => 'din', 'Dinv29913' => 'din', 'Dinv34580' => 'din', 'Dinv34582' => 'din', 'Dinv44632' => 'din', 'Duzib052G0266' => 'dzi', 'Duzib133G0907' => 'dzi', 'Duzib133G1034' => 'dzi', 'Duzib138G0207' => 'dzi', 'Duzib138G0491' => 'dzi', 'Duzib151G0812' => 'dzi', 'Duzib151G1166' => 'dzi', 'Duzib168G0192' => 'dzi', 'Duzib211G0077' => 'dzi', 'Duzib212G0429' => 'dzi', 'Duzib212G0472' => 'dzi', 'ECA233G2617' => 'eca', 'ECA236G4188' => 'eca', 'ECA240G0936' => 'eca', 'ECA240G1129' => 'eca', 'ECA247G0623' => 'eca', 'EL10Ac5g10451' => 'bvu', 'EL10Ac5g10453' => 'bvu', 'EL10Ac5g10894' => 'bvu', 'Eucgr.H00192' => 'egr', 'Eucgr.H00193' => 'egr', 'Eucgr.H00194' => 'egr', 'Eucgr.J01562' => 'egr', 'Eucgr.K03301' => 'egr', 'FAN02G0632' => 'fan', 'FAN05G5378' => 'fan', 'FAN09G3247' => 'fan', 'FAN12G0435' => 'fan', 'FAN12G2426' => 'fan', 'FAN14G1707' => 'fan', 'FAN14G4725' => 'fan', 'FAN15G2071' => 'fan', 'FAN17G3065' => 'fan', 'FAN19G1376' => 'fan', 'FAN20G0354' => 'fan', 'FAN20G2429' => 'fan', 'FAN20G2658' => 'fan', 'FAN24G2343' => 'fan', 'FAN27G2362' => 'fan', 'FAN28G1765' => 'fan', 'FvH4_1g16020' => 'fve', 'FvH4_2g04890' => 'fve', 'FvH4_2g22270' => 'fve', 'FvH4_4g02630' => 'fve', 'FvH4_4g02640' => 'fve', 'FvH4_6g02650' => 'fve', 'Glyma.02G140600' => 'gma', 'Glyma.03G159900' => 'gma', 'Glyma.05G234800' => 'gma', 'Glyma.07G269600' => 'gma', 'Glyma.08G042300' => 'gma', 'Glyma.10G033500' => 'gma', 'Glyma.10G185200' => 'gma', 'Glyma.17G004300' => 'gma', 'Glyma.19G161900' => 'gma', 'Glyma.20G205100' => 'gma', 'Glyma.20G205200' => 'gma', 'Gohir.A01G139101' => 'ghi', 'Gohir.A02G035600' => 'ghi', 'Gohir.A02G117901' => 'ghi', 'Gohir.A07G210100' => 'ghi', 'Gohir.A07G210200' => 'ghi', 'Gohir.A08G061100' => 'ghi', 'Gohir.A09G223000' => 'ghi', 'Gohir.A09G223100' => 'ghi', 'Gohir.A10G113900' => 'ghi', 'Gohir.A10G114000' => 'ghi', 'Gohir.D02G042300' => 'ghi', 'Gohir.D07G216100' => 'ghi', 'Gohir.D07G216200' => 'ghi', 'Gohir.D08G070400' => 'ghi', 'Gohir.D09G225000' => 'ghi', 'Gohir.D09G225100' => 'ghi', 'Gohir.D10G152300' => 'ghi', 'Gohir.D10G153200' => 'ghi', 'Gohir.D11G133701' => 'ghi', 'Gorai.004G074100' => 'gra', 'Gorai.005G046800' => 'gra', 'Gorai.006G246500' => 'gra', 'Gorai.006G246600' => 'gra', 'Gorai.007G142900' => 'gra', 'Gorai.011G171000' => 'gra', 'Gorai.011G171100' => 'gra', 'Gorai.013G104300' => 'gra', 'Gorai.013G104400' => 'gra', 'GSVIVG01000754001' => 'vvi', 'GSVIVG01000756001' => 'vvi', 'GSVIVG01010903001' => 'vvi', 'GSVIVG01017623001' => 'vvi', 'GSVIVG01018113001' => 'vvi', 'GSVIVG01018116001' => 'vvi', 'GSVIVG01018118001' => 'vvi', 'HanXRQChr03g0076211' => 'han', 'HanXRQChr03g0092431' => 'han', 'HanXRQChr03g0092441' => 'han', 'HanXRQChr03g0092591' => 'han', 'HanXRQChr03g0092671' => 'han', 'HanXRQChr03g0092681' => 'han', 'HanXRQChr03g0092691' => 'han', 'HanXRQChr03g0092701' => 'han', 'HanXRQChr03g0092721' => 'han', 'HanXRQChr03g0092731' => 'han', 'HanXRQChr04g0113681' => 'han', 'HanXRQChr10g0281371' => 'han', 'HanXRQChr11g0337141' => 'han', 'HanXRQChr13g0424521' => 'han', 'HanXRQChr13g0424531' => 'han', 'HanXRQChr13g0424541' => 'han', 'HanXRQChr16g0498221' => 'han', 'Haze_04377' => 'cav', 'Haze_11298' => 'cav', 'Haze_24547' => 'cav', 'Haze_24550' => 'cav', 'Haze_26587' => 'cav', 'Hma1.2p1_0650F.1_g195410' => 'hma', 'Hma1.2p1_0893F.1_g233470' => 'hma', 'HPP92_006508' => 'vpl', 'HPP92_024780' => 'vpl', 'Hund02688' => 'sun', 'Hund09380' => 'sun', 'Hund09381' => 'sun', 'Hund09832' => 'sun', 'Hund09833' => 'sun', 'Hund11351' => 'sun', 'Hund11513' => 'sun', 'Lalb_Chr06g0162591' => 'lal', 'Lalb_Chr06g0162601' => 'lal', 'Lalb_Chr06g0169321' => 'lal', 'Lalb_Chr09g0330951' => 'lal', 'Lalb_Chr16g0387631' => 'lal', 'Lalb_Chr21g0306241' => 'lal', 'Lalb_Chr25g0290051' => 'lal', 'Lalb_Chr25g0290061' => 'lal', 'Lalb_Chr25g0290071' => 'lal', 'Lj1g0003876' => 'lja', 'Lj1P1207T36' => 'lonja', 'Lj2C1156G12' => 'lonja', 'Lj3A793G39' => 'lonja', 'Lj3C580G2' => 'lonja', 'Lj3C780G2' => 'lonja', 'Lj3C780T4' => 'lonja', 'Lj3C793G9' => 'lonja', 'Lj4g0012960' => 'lja', 'Lj5g0021252' => 'lja', 'Lj5g0021484' => 'lja', 'Lj5g0024528' => 'lja', 'Lj6A399T12' => 'lonja', 'Lj6A656G65' => 'lonja', 'Lsat_1_v5_gn_3_125500' => 'lsa', 'Lsat_1_v5_gn_3_125540' => 'lsa', 'Lsat_1_v5_gn_5_72701' => 'lsa', 'Lsat_1_v5_gn_8_91560' => 'lsa', 'Lsat_1_v5_gn_9_9640' => 'lsa', 'Manes.01G200600' => 'mes', 'Manes.01G200700' => 'mes', 'Manes.03G168900' => 'mes', 'Manes.03G169000' => 'mes', 'Manes.05G085801' => 'mes', 'Manes.05G086200' => 'mes', 'Manes.15G036700' => 'mes', 'Manes.15G036900' => 'mes', 'Mapoly0004s0172' => 'mpo', 'Mapoly0023s0001' => 'mpo', 'Mapoly0142s0012' => 'mpo', 'MBI01_g32854_MAGBIO' => 'mbi', 'MBI11_g24427_MAGBIO' => 'mbi', 'MBI11_g47319_MAGBIO' => 'mbi', 'MCO01G433' => 'mco', 'MD00G1187800' => 'mdo', 'MD04G1226500' => 'mdo', 'MD05G1203900' => 'mdo', 'MD10G1191100' => 'mdo', 'MD12G1243500' => 'mdo', 'MD13G1207000' => 'mdo', 'MD13G1207100' => 'mdo', 'MD16G1208600' => 'mdo', 'Medtr1g050352' => 'mtr', 'Medtr1g070385' => 'mtr', 'Medtr1g070450' => 'mtr', 'Medtr1g075200' => 'mtr', 'Medtr1g075250' => 'mtr', 'Medtr1g075260' => 'mtr', 'Medtr1g475250' => 'mtr', 'Medtr4g075450' => 'mtr', 'Medtr7g096300' => 'mtr', 'Medtr8g105110' => 'mtr', 'MELO3C006470.2' => 'cme', 'MELO3C006471.2' => 'cme', 'MELO3C020772.2' => 'cme', 'MELO3C026780.2' => 'cme', 'MELO3C026781.2' => 'cme', 'Migut.D00390' => 'egut', 'Migut.G00435' => 'egut', 'Migut.G00436' => 'egut', 'Migut.G00718' => 'egut', 'MSTRG.21891' => 'ama', 'MSTRG.26910' => 'ama', 'MSTRG.4099' => 'ama', 'MSTRG.9925' => 'ama', 'Nitab4.5_0000165g0010' => 'nta', 'Nitab4.5_0000209g0180' => 'nta', 'Nitab4.5_0000244g0440' => 'nta', 'Nitab4.5_0000525g0220' => 'nta', 'Nitab4.5_0001597g0020' => 'nta', 'Nitab4.5_0001878g0040' => 'nta', 'Nitab4.5_0001878g0060' => 'nta', 'Nitab4.5_0002838g0100' => 'nta', 'Nitab4.5_0002838g0120' => 'nta', 'Nitab4.5_0004798g0030' => 'nta', 'Nitab4.5_0005420g0010' => 'nta', 'Nitab4.5_0005507g0010' => 'nta', 'Nitab4.5_0005574g0020' => 'nta', 'Nitab4.5_0005838g0010' => 'nta', 'Nitab4.5_0010580g0020' => 'nta', 'Nn1g02599' => 'nnu', 'Nn1g02608' => 'nnu', 'Nn3g17742' => 'nnu', 'Nn3g19534' => 'nnu', 'Nn3g19535' => 'nnu', 'Oeu008790.1' => 'oeu', 'Oeu008792.1' => 'oeu', 'Oeu032590.1' => 'oeu', 'Oeu035349.1' => 'oeu', 'Oeu049791.1' => 'oeu', 'Os01g0774500' => 'osa', 'Os03g0628800' => 'osa', 'Os03g0798600' => 'osa', 'Os05g0508800' => 'osa', 'Peaxi162Scf00036g02018' => 'pax', 'Peaxi162Scf00578g00032' => 'pax', 'Peaxi162Scf00578g00317' => 'pax', 'Peaxi162Scf00785g00114' => 'pax', 'Peaxi162Scf00813g00119' => 'pax', 'Peaxi162Scf00906g00227' => 'pax', 'PGR004G0875' => 'pgr', 'PGR004G2424' => 'pgr', 'PGR031G1239' => 'pgr', 'PGR031G2474' => 'pgr', 'PGR044G0423' => 'pgr', 'PGSC0003DMG400001128' => 'stu', 'PGSC0003DMG400007336' => 'stu', 'PGSC0003DMG400016318' => 'stu', 'PGSC0003DMG400016319' => 'stu', 'PGSC0003DMG400018074' => 'stu', 'Phvul.001G157700' => 'pvu', 'Phvul.002G148550' => 'pvu', 'Phvul.002G320200' => 'pvu', 'Phvul.003G089200' => 'pvu', 'Phvul.007G126000' => 'pvu', 'Phvul.007G126100' => 'pvu', 'Phvul.007G178000' => 'pvu', 'Phvul.007G178200' => 'pvu', 'Potri.002G043000' => 'ptr', 'Potri.002G043200' => 'ptr', 'Potri.003G123750' => 'ptr', 'Potri.005G055401' => 'ptr', 'Potri.005G219700' => 'ptr', 'Potri.005G220000' => 'ptr', 'Potri.008G161901' => 'ptr', 'Potri.008G162000' => 'ptr', 'Potri.008G162400' => 'ptr', 'Potri.010G076900' => 'ptr', 'Pp3c12_9180' => 'ppa', 'Pp3c13_19770' => 'ppa', 'Pp3c14_22950' => 'ppa', 'Pp3c16_12160' => 'ppa', 'Pp3c27_7820' => 'ppa', 'Pp3c2_3490' => 'ppa', 'Pp3c3_23700' => 'ppa', 'Pp3c3_36520' => 'ppa', 'Pp3c4_15250' => 'ppa', 'PRCOL_00007002' => 'pco', 'Prupe.1G030600' => 'ppe', 'Prupe.1G030700' => 'ppe', 'Prupe.6G345200' => 'ppe', 'Prupe.8G230300' => 'ppe', 'Prupe.8G230500' => 'ppe', 'Psat3g059600' => 'psa', 'Psat5g200920' => 'psa', 'Psat6g056440' => 'psa', 'Psat6g057360' => 'psa', 'Psat6g134120' => 'psa', 'Psat6g134160' => 'psa', 'Psat7g008640' => 'psa', 'Psat7g185240' => 'psa', 'PSO017G1330' => 'pso', 'PSO063G6097' => 'pso', 'PSO170G0835' => 'pso', 'PSO170G2499' => 'pso', 'PSO210G5058' => 'pso', 'PSO210G6154' => 'pso', 'PSO585G0031' => 'pso', 'PSO832G0264' => 'pso', 'PSO832G4288' => 'pso', 'QL03p027355' => 'qlo', 'QL03p027430' => 'qlo', 'QL04p081380' => 'qlo', 'QL06p015642' => 'qlo', 'QL06p015650' => 'qlo', 'QL06p015686' => 'qlo', 'QL12p042927' => 'qlo', 'QL93p1863_0035' => 'qlo', 'RcHm_v2.0_Chr3g0450581' => 'rch', 'RcHm_v2.0_Chr4g0390371' => 'rch', 'RcHm_v2.0_Chr4g0390381' => 'rch', 'RcHm_v2.0_Chr4g0390491' => 'rch', 'RcHm_v2.0_Chr4g0390501' => 'rch', 'RcHm_v2.0_Chr6g0289231' => 'rch', 'Rhsim04G0190400' => 'rsi', 'Rhsim04G0190500' => 'rsi', 'Rhsim04G0190600' => 'rsi', 'Rhsim13G0031400' => 'rsi', 'Rhsim13G0165600' => 'rsi', 'RhsimUnG0114600' => 'rsi', 'RhsimUnG0114700' => 'rsi', 'Sabra02G0034800' => 'sbr', 'Sabra02G0035100' => 'sbr', 'Sabra05G0168600' => 'sbr', 'Sabra05G0168800' => 'sbr', 'Sabra08G0123700' => 'sbr', 'Sabra10G0031900' => 'sbr', 'Sabra13G0039000' => 'sbr', 'SalBow2G0782' => 'sbo', 'SalBow2G1403' => 'sbo', 'SalBow4G0074' => 'sbo', 'SalBow4G2635' => 'sbo', 'SalBow5G3010' => 'sbo', 'Sc05g0000870' => 'sci', 'Sc05g0000890' => 'sci', 'Sc13g0005000' => 'sci', 'Sc13g0005030' => 'sci', 'Sc19g0003790' => 'sci', 'Sc19g0003800' => 'sci', 'Sed0003467' => 'sed', 'Sed0009355' => 'sed', 'Sed0009894' => 'sed', 'Sed0011972' => 'sed', 'Sed0021483' => 'sed', 'Sed0021750' => 'sed', 'Sed0026279' => 'sed', 'SEGI_05312' => 'sgi', 'SEGI_10112' => 'sgi', 'SEGI_15835' => 'sgi', 'SEGI_30386' => 'sgi', 'SEGI_34122' => 'sgi', 'SEGI_35063' => 'sgi', 'SGA_v2.0_scaffold101G29794' => 'sas', 'SGA_v2.0_scaffold1G00573' => 'sas', 'SGA_v2.0_scaffold79G25637' => 'sas', 'SGA_v2.0_scaffold88G27283' => 'sas', 'SGA_v2.0_scaffold88G27285' => 'sas', 'SGA_v2.0_scaffold88G27331' => 'sas', 'SHI09937' => 'shi', 'SMO119G0302' => 'smo', 'SMO137G0231' => 'smo', 'SMO367G1151' => 'smo', 'Solyc02g082000.3' => 'sly', 'Solyc06g031670.3' => 'sly', 'Solyc06g053810.3' => 'sly', 'Solyc07g025457.1' => 'sly', 'Solyc08g059740.1' => 'sly', 'Solyc08g059750.3' => 'sly', 'Solyc09g083370.3' => 'sly', 'Solyc12g038950.3' => 'sly', 'Sopen02g026630' => 'spe', 'Sopen06g018930' => 'spe', 'Sopen06g018940' => 'spe', 'Sopen08g009460' => 'spe', 'Sopen09g032290' => 'spe', 'Sp1g03080' => 'spa', 'Sp1g03090' => 'spa', 'Sp1g05480' => 'spa', 'Sp2g07860' => 'spa', 'Sp2g08430' => 'spa', 'Sp2g08440' => 'spa', 'Sp2g26200' => 'spa', 'Sp4g13170' => 'spa', 'Sp6g33840' => 'spa', 'SpUn1204_0010' => 'spa', 'TAR365G0908' => 'tar', 'TAR381G1270' => 'tar', 'TAR381G1651' => 'tar', 'TAR625G1131' => 'tar', 'TAR633G0962' => 'tar', 'TAR633G1729' => 'tar', 'TAR633G1864' => 'tar', 'TAR636G0221' => 'tar', 'TAR636G0314' => 'tar', 'TAR636G3202' => 'tar', 'THA.LOC104800805' => 'tha', 'THA.LOC104801096' => 'tha', 'THA.LOC104801555' => 'tha', 'THA.LOC104808491' => 'tha', 'THA.LOC104808595' => 'tha', 'THA.LOC104815985' => 'tha', 'THA.LOC104822250' => 'tha', 'THA.LOC104826071' => 'tha', 'Thecc.01G265200' => 'tca', 'Thecc.01G265300' => 'tca', 'Thecc.01G265700' => 'tca', 'Thecc.03G109100' => 'tca', 'Thecc.04G245900' => 'tca', 'Thecc.04G246000' => 'tca', 'Thhalv10003334m.g' => 'esa', 'Thhalv10005508m.g' => 'esa', 'Thhalv10005643m.g' => 'esa', 'Thhalv10007316m.g' => 'esa', 'Thhalv10009006m.g' => 'esa', 'Thhalv10009309m.g' => 'esa', 'Thhalv10014917m.g' => 'esa', 'Thhalv10014919m.g' => 'esa', 'Thhalv10015393m.g' => 'esa', 'Thhalv10016515m.g' => 'esa', 'Thhalv10029242m.g' => 'esa', 'TPR.G16654' => 'tpr', 'TPR.G20589' => 'tpr', 'TPR.G23029' => 'tpr', 'TPR.G27731' => 'tpr', 'TPR.G28889' => 'tpr', 'TPR.G28899' => 'tpr', 'TPR.G30846' => 'tpr', 'TPR.G5452' => 'tpr', 'TPR.G5713' => 'tpr', 'TPR.G9046' => 'tpr', 'TPR.G9061' => 'tpr', 'TWI09G1075' => 'twi', 'TWI12G0806' => 'twi', 'TWI18G0108' => 'twi', 'TWI53G1361' => 'twi', 'TWI73G0185' => 'twi', 'TWI73G0427' => 'twi', 'unitig_37.g12001' => 'ugi', 'unitig_747.g21660' => 'ugi', 'unitig_748.g7232' => 'ugi', 'unitig_748.g7315' => 'ugi', 'unitig_85.g27262' => 'ugi', 'unitig_92.g28220' => 'ugi', 'vmacro02632' => 'vma', 'vmacro08410' => 'vma', 'vmacro08411' => 'vma', 'vmacro15407' => 'vma', 'VMungo0251G3619' => 'vmu', 'VMungo0720G1204' => 'vmu', 'VMungo0720G1918' => 'vmu', 'VMungo0720G2387' => 'vmu', 'VMungo0720G2961' => 'vmu', 'VMungo1215G2154' => 'vmu', 'VMungo1383G2411' => 'vmu', 'Zm00001eb051130' => 'zma', 'Zm00001eb116830' => 'zma', 'Zm00001eb116850' => 'zma', 'Zm00001eb151740' => 'zma', 'Zm00001eb292360' => 'zma', 'Zm00001eb301640' => 'zma' ), 'gf_id' => 'HOM05D000856', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000856' ), 'data_identifier' => 'HOM05D000856', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000856', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p00010' => 'bna', 'A03p04160' => 'bna', 'A03p17160' => 'bna', 'A04p23370' => 'bna', 'A05p14860' => 'bna', 'A08p37020' => 'bna', 'A09p08050' => 'bna', 'A09p66800' => 'bna', 'A09p67940' => 'bna', 'A10p02680' => 'bna', 'A10p05320' => 'bna', 'Aa31LG1G20560' => 'aar', 'Aa31LG1G20610' => 'aar', 'Aa31LG1G7810' => 'aar', 'Aa31LG5G3590' => 'aar', 'Aa31LG5G6140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3819' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4683' => 'aag', 'Actinidia04480' => 'ach', 'Actinidia05466' => 'ach', 'Actinidia08445' => 'ach', 'Actinidia21170' => 'ach', 'Actinidia24812' => 'ach', 'Actinidia24951' => 'ach', 'Actinidia40088' => 'ach', 'Ah.02g111660' => 'amhyb', 'Ah.11g048900' => 'amhyb', 'Ah.11g049910' => 'amhyb', 'AL1G13870' => 'aly', 'AL1G13880' => 'aly', 'AL1G16760' => 'aly', 'AL390U10020' => 'aly', 'AL4G25520' => 'aly', 'AL6G19890' => 'aly', 'AL6G19900' => 'aly', 'AL6G19910' => 'aly', 'AL8G40100' => 'aly', 'Aqoxy2G03562' => 'aox', 'Aqoxy5G00316' => 'aox', 'Aqoxy5G00926' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1628KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1H403S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2FU6SJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.882I6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8YRY2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YN1SN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AF70II' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZA8L1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F916KL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHRD8H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KTZ8QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S22EMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8M29T' => 'arhy', 'AT1G04270' => 'ath', 'AT1G04280' => 'ath', 'AT1G06750' => 'ath', 'AT1G33850' => 'ath', 'AT2G30630' => 'ath', 'AT5G09490' => 'ath', 'AT5G09500' => 'ath', 'AT5G09510' => 'ath', 'AT5G43640' => 'ath', 'AT5G63070' => 'ath', 'ATR0605G315' => 'atr', 'Atru.chr11.175' => 'acertr', 'Atru.chr11.653' => 'acertr', 'Atru.chr3.1616' => 'acertr', 'Atru.chr4.2230' => 'acertr', 'Atru.chr4.2232' => 'acertr', 'Atru.chr5.1598' => 'acertr', 'Atru.chr5.1600' => 'acertr', 'Atru.chr5.2188' => 'acertr', 'AUR62008326' => 'cqu', 'AUR62011922' => 'cqu', 'AUR62011924' => 'cqu', 'AUR62021771' => 'cqu', 'AUR62032237' => 'cqu', 'AUR62032240' => 'cqu', 'BcaB01g05572' => 'bca', 'BcaB02g10337' => 'bca', 'BcaB04g19944' => 'bca', 'BcaB05g21548' => 'bca', 'BcaB05g21549' => 'bca', 'BcaB05g23227' => 'bca', 'BcaB06g26256' => 'bca', 'BcaB06g26257' => 'bca', 'BcaB06g28379' => 'bca', 'BcaC02g11159' => 'bca', 'BcaC03g13258' => 'bca', 'BcaC03g13259' => 'bca', 'BcaC05g24456' => 'bca', 'BcaC05g24457' => 'bca', 'BcaC07g36922' => 'bca', 'BcaC07g36923' => 'bca', 'BcaC07g42050' => 'bca', 'BcaC07g42176' => 'bca', 'BcaC07g42195' => 'bca', 'BcaC07g42196' => 'bca', 'BcaNung06674' => 'bca', 'BolC2t06351H' => 'bol', 'BolC2t06352H' => 'bol', 'BolC3t12993H' => 'bol', 'BolC4t23525H' => 'bol', 'BolC4t27475H' => 'bol', 'BolC5t29025H' => 'bol', 'BolC5t29026H' => 'bol', 'BolC8t46898H' => 'bol', 'BolC8t46899H' => 'bol', 'BolC8t52630H' => 'bol', 'BolC8t52765H' => 'bol', 'BolC9t53824H' => 'bol', 'BraA03t09760Z' => 'bra', 'BraA03t10990Z' => 'bra', 'BraA05t20413Z' => 'bra', 'BraA08t35602Z' => 'bra', 'BraA09t36458Z' => 'bra', 'BraA09t42018Z' => 'bra', 'BraA09t42129Z' => 'bra', 'BraA10t42536Z' => 'bra', 'BraA10t42537Z' => 'bra', 'C01p10690' => 'bna', 'C02p03890' => 'bna', 'C02p03900' => 'bna', 'C03p04620' => 'bna', 'C04p19870' => 'bna', 'C04p59670' => 'bna', 'C05p02460' => 'bna', 'C05p02470' => 'bna', 'C08p00980' => 'bna', 'C08p00990' => 'bna', 'C08p51030' => 'bna', 'C08p52360' => 'bna', 'C09p09120' => 'bna', 'CAN.G19.15' => 'can', 'CAN.G251.10' => 'can', 'CAN.G251.9' => 'can', 'CAN.G398.24' => 'can', 'CAN.G410.32' => 'can', 'CAN.G881.2' => 'can', 'CANSAT01G3025' => 'cansat', 'CANSAT78G1211' => 'cansat', 'CANSAT78G1218' => 'cansat', 'CANSAT78G1521' => 'cansat', 'CANSAT78G1670' => 'cansat', 'CARHR003600' => 'chi', 'CARHR003610' => 'chi', 'CARHR006290' => 'chi', 'CARHR006430' => 'chi', 'CARHR124110' => 'chi', 'CARHR203870' => 'chi', 'CARHR203880' => 'chi', 'CARHR203890' => 'chi', 'CARHR276880' => 'chi', 'Carub.0001s0346' => 'cru', 'Carub.0001s0347' => 'cru', 'Carub.0001s0607' => 'cru', 'Carub.0003s2768' => 'cru', 'Carub.0003s2769' => 'cru', 'Carub.0004s1178' => 'cru', 'Carub.0006s0806' => 'cru', 'Carub.0006s0807' => 'cru', 'Carub.0006s0808' => 'cru', 'Carub.0008s0501' => 'cru', 'Carub.0008s2379' => 'cru', 'Ca_08655_v3' => 'car', 'Ca_08922_v3' => 'car', 'Ca_08923_v3' => 'car', 'Ca_09119_v3' => 'car', 'Ca_09703_v3' => 'car', 'Ca_09705_v3' => 'car', 'Ca_09835_v3' => 'car', 'Ca_26403_v3' => 'car', 'Ca_30719_v3' => 'car', 'CBR_g17958' => 'cbr', 'CBR_g40516' => 'cbr', 'Cc00_g05350' => 'ccan', 'Cc01_g18690' => 'ccan', 'Cc03_g04830' => 'ccan', 'Cc03_g04850' => 'ccan', 'CDE02G4469' => 'cde', 'CDE06G0883' => 'cde', 'CDE06G1295' => 'cde', 'CDE06G1390' => 'cde', 'CDE07G0584' => 'cde', 'CDE07G1084' => 'cde', 'CDE08G1259' => 'cde', 'Cfa002341' => 'cfa', 'Cfa024337' => 'cfa', 'Ciclev10004749m.g' => 'ccl', 'Ciclev10006127m.g' => 'ccl', 'Ciclev10019720m.g' => 'ccl', 'Ciclev10022652m.g' => 'ccl', 'CiPaw.01G190400' => 'cil', 'CiPaw.01G190500' => 'cil', 'CiPaw.02G116400' => 'cil', 'CiPaw.02G116500' => 'cil', 'CiPaw.04G183000' => 'cil', 'CiPaw.04G183300' => 'cil', 'ClCG05G004610' => 'cla', 'ClCG05G004620' => 'cla', 'ClCG06G006730' => 'cla', 'ClCG06G006740' => 'cla', 'ClCG11G003690' => 'cla', 'COL.COLO4_08276' => 'col', 'COL.COLO4_08277' => 'col', 'COL.COLO4_15787' => 'col', 'COL.COLO4_15789' => 'col', 'Cpa.g.c44815' => 'cpa', 'Cpa.g.sc52.144' => 'cpa', 'Cpa.g.sc58.46' => 'cpa', 'Cpa.g.sc58.47' => 'cpa', 'Cre08.g360900' => 'cre', 'CsaV3_2G013030' => 'csa', 'CsaV3_2G013050' => 'csa', 'CsaV3_2G015620' => 'csa', 'CsaV3_3G012590' => 'csa', 'CsaV3_3G012600' => 'csa', 'CSS0001641' => 'camsi', 'CSS0008310' => 'camsi', 'CSS0013011' => 'camsi', 'CSS0017147' => 'camsi', 'CSS0022970' => 'camsi', 'CSS0025655' => 'camsi', 'CSS0028665' => 'camsi', 'CSS0029117' => 'camsi', 'CSS0032024' => 'camsi', 'CSS0039681' => 'camsi', 'CSS0046516' => 'camsi', 'CSS0050307' => 'camsi', 'DCAR_005871' => 'dca', 'DCAR_007342' => 'dca', 'DCAR_024228' => 'dca', 'DCAR_027277' => 'dca', 'DCAR_030718' => 'dca', 'Dinv20287' => 'din', 'Dinv22461' => 'din', 'Dinv22464' => 'din', 'Dinv29912' => 'din', 'Dinv29913' => 'din', 'Dinv34580' => 'din', 'Dinv34582' => 'din', 'Dinv44632' => 'din', 'Duzib052G0266' => 'dzi', 'Duzib133G0907' => 'dzi', 'Duzib133G1034' => 'dzi', 'Duzib138G0207' => 'dzi', 'Duzib138G0491' => 'dzi', 'Duzib151G0812' => 'dzi', 'Duzib151G1166' => 'dzi', 'Duzib168G0192' => 'dzi', 'Duzib211G0077' => 'dzi', 'Duzib212G0429' => 'dzi', 'Duzib212G0472' => 'dzi', 'ECA233G2617' => 'eca', 'ECA236G4188' => 'eca', 'ECA240G0936' => 'eca', 'ECA240G1129' => 'eca', 'ECA247G0623' => 'eca', 'EL10Ac5g10451' => 'bvu', 'EL10Ac5g10453' => 'bvu', 'EL10Ac5g10894' => 'bvu', 'Eucgr.H00192' => 'egr', 'Eucgr.H00193' => 'egr', 'Eucgr.H00194' => 'egr', 'Eucgr.J01562' => 'egr', 'Eucgr.K03301' => 'egr', 'FAN02G0632' => 'fan', 'FAN05G5378' => 'fan', 'FAN09G3247' => 'fan', 'FAN12G0435' => 'fan', 'FAN12G2426' => 'fan', 'FAN14G1707' => 'fan', 'FAN14G4725' => 'fan', 'FAN15G2071' => 'fan', 'FAN17G3065' => 'fan', 'FAN19G1376' => 'fan', 'FAN20G0354' => 'fan', 'FAN20G2429' => 'fan', 'FAN20G2658' => 'fan', 'FAN24G2343' => 'fan', 'FAN27G2362' => 'fan', 'FAN28G1765' => 'fan', 'FvH4_1g16020' => 'fve', 'FvH4_2g04890' => 'fve', 'FvH4_2g22270' => 'fve', 'FvH4_4g02630' => 'fve', 'FvH4_4g02640' => 'fve', 'FvH4_6g02650' => 'fve', 'Glyma.02G140600' => 'gma', 'Glyma.03G159900' => 'gma', 'Glyma.05G234800' => 'gma', 'Glyma.07G269600' => 'gma', 'Glyma.08G042300' => 'gma', 'Glyma.10G033500' => 'gma', 'Glyma.10G185200' => 'gma', 'Glyma.17G004300' => 'gma', 'Glyma.19G161900' => 'gma', 'Glyma.20G205100' => 'gma', 'Glyma.20G205200' => 'gma', 'Gohir.A01G139101' => 'ghi', 'Gohir.A02G035600' => 'ghi', 'Gohir.A02G117901' => 'ghi', 'Gohir.A07G210100' => 'ghi', 'Gohir.A07G210200' => 'ghi', 'Gohir.A08G061100' => 'ghi', 'Gohir.A09G223000' => 'ghi', 'Gohir.A09G223100' => 'ghi', 'Gohir.A10G113900' => 'ghi', 'Gohir.A10G114000' => 'ghi', 'Gohir.D02G042300' => 'ghi', 'Gohir.D07G216100' => 'ghi', 'Gohir.D07G216200' => 'ghi', 'Gohir.D08G070400' => 'ghi', 'Gohir.D09G225000' => 'ghi', 'Gohir.D09G225100' => 'ghi', 'Gohir.D10G152300' => 'ghi', 'Gohir.D10G153200' => 'ghi', 'Gohir.D11G133701' => 'ghi', 'Gorai.004G074100' => 'gra', 'Gorai.005G046800' => 'gra', 'Gorai.006G246500' => 'gra', 'Gorai.006G246600' => 'gra', 'Gorai.007G142900' => 'gra', 'Gorai.011G171000' => 'gra', 'Gorai.011G171100' => 'gra', 'Gorai.013G104300' => 'gra', 'Gorai.013G104400' => 'gra', 'GSVIVG01000754001' => 'vvi', 'GSVIVG01000756001' => 'vvi', 'GSVIVG01010903001' => 'vvi', 'GSVIVG01017623001' => 'vvi', 'GSVIVG01018113001' => 'vvi', 'GSVIVG01018116001' => 'vvi', 'GSVIVG01018118001' => 'vvi', 'HanXRQChr03g0076211' => 'han', 'HanXRQChr03g0092431' => 'han', 'HanXRQChr03g0092441' => 'han', 'HanXRQChr03g0092591' => 'han', 'HanXRQChr03g0092671' => 'han', 'HanXRQChr03g0092681' => 'han', 'HanXRQChr03g0092691' => 'han', 'HanXRQChr03g0092701' => 'han', 'HanXRQChr03g0092721' => 'han', 'HanXRQChr03g0092731' => 'han', 'HanXRQChr04g0113681' => 'han', 'HanXRQChr10g0281371' => 'han', 'HanXRQChr11g0337141' => 'han', 'HanXRQChr13g0424521' => 'han', 'HanXRQChr13g0424531' => 'han', 'HanXRQChr13g0424541' => 'han', 'HanXRQChr16g0498221' => 'han', 'Haze_04377' => 'cav', 'Haze_11298' => 'cav', 'Haze_24547' => 'cav', 'Haze_24550' => 'cav', 'Haze_26587' => 'cav', 'Hma1.2p1_0650F.1_g195410' => 'hma', 'Hma1.2p1_0893F.1_g233470' => 'hma', 'HPP92_006508' => 'vpl', 'HPP92_024780' => 'vpl', 'Hund02688' => 'sun', 'Hund09380' => 'sun', 'Hund09381' => 'sun', 'Hund09832' => 'sun', 'Hund09833' => 'sun', 'Hund11351' => 'sun', 'Hund11513' => 'sun', 'Lalb_Chr06g0162591' => 'lal', 'Lalb_Chr06g0162601' => 'lal', 'Lalb_Chr06g0169321' => 'lal', 'Lalb_Chr09g0330951' => 'lal', 'Lalb_Chr16g0387631' => 'lal', 'Lalb_Chr21g0306241' => 'lal', 'Lalb_Chr25g0290051' => 'lal', 'Lalb_Chr25g0290061' => 'lal', 'Lalb_Chr25g0290071' => 'lal', 'Lj1g0003876' => 'lja', 'Lj1P1207T36' => 'lonja', 'Lj2C1156G12' => 'lonja', 'Lj3A793G39' => 'lonja', 'Lj3C580G2' => 'lonja', 'Lj3C780G2' => 'lonja', 'Lj3C780T4' => 'lonja', 'Lj3C793G9' => 'lonja', 'Lj4g0012960' => 'lja', 'Lj5g0021252' => 'lja', 'Lj5g0021484' => 'lja', 'Lj5g0024528' => 'lja', 'Lj6A399T12' => 'lonja', 'Lj6A656G65' => 'lonja', 'Lsat_1_v5_gn_3_125500' => 'lsa', 'Lsat_1_v5_gn_3_125540' => 'lsa', 'Lsat_1_v5_gn_5_72701' => 'lsa', 'Lsat_1_v5_gn_8_91560' => 'lsa', 'Lsat_1_v5_gn_9_9640' => 'lsa', 'Manes.01G200600' => 'mes', 'Manes.01G200700' => 'mes', 'Manes.03G168900' => 'mes', 'Manes.03G169000' => 'mes', 'Manes.05G085801' => 'mes', 'Manes.05G086200' => 'mes', 'Manes.15G036700' => 'mes', 'Manes.15G036900' => 'mes', 'Mapoly0004s0172' => 'mpo', 'Mapoly0023s0001' => 'mpo', 'Mapoly0142s0012' => 'mpo', 'MBI01_g32854_MAGBIO' => 'mbi', 'MBI11_g24427_MAGBIO' => 'mbi', 'MBI11_g47319_MAGBIO' => 'mbi', 'MCO01G433' => 'mco', 'MD00G1187800' => 'mdo', 'MD04G1226500' => 'mdo', 'MD05G1203900' => 'mdo', 'MD10G1191100' => 'mdo', 'MD12G1243500' => 'mdo', 'MD13G1207000' => 'mdo', 'MD13G1207100' => 'mdo', 'MD16G1208600' => 'mdo', 'Medtr1g050352' => 'mtr', 'Medtr1g070385' => 'mtr', 'Medtr1g070450' => 'mtr', 'Medtr1g075200' => 'mtr', 'Medtr1g075250' => 'mtr', 'Medtr1g075260' => 'mtr', 'Medtr1g475250' => 'mtr', 'Medtr4g075450' => 'mtr', 'Medtr7g096300' => 'mtr', 'Medtr8g105110' => 'mtr', 'MELO3C006470.2' => 'cme', 'MELO3C006471.2' => 'cme', 'MELO3C020772.2' => 'cme', 'MELO3C026780.2' => 'cme', 'MELO3C026781.2' => 'cme', 'Migut.D00390' => 'egut', 'Migut.G00435' => 'egut', 'Migut.G00436' => 'egut', 'Migut.G00718' => 'egut', 'MSTRG.21891' => 'ama', 'MSTRG.26910' => 'ama', 'MSTRG.4099' => 'ama', 'MSTRG.9925' => 'ama', 'Nitab4.5_0000165g0010' => 'nta', 'Nitab4.5_0000209g0180' => 'nta', 'Nitab4.5_0000244g0440' => 'nta', 'Nitab4.5_0000525g0220' => 'nta', 'Nitab4.5_0001597g0020' => 'nta', 'Nitab4.5_0001878g0040' => 'nta', 'Nitab4.5_0001878g0060' => 'nta', 'Nitab4.5_0002838g0100' => 'nta', 'Nitab4.5_0002838g0120' => 'nta', 'Nitab4.5_0004798g0030' => 'nta', 'Nitab4.5_0005420g0010' => 'nta', 'Nitab4.5_0005507g0010' => 'nta', 'Nitab4.5_0005574g0020' => 'nta', 'Nitab4.5_0005838g0010' => 'nta', 'Nitab4.5_0010580g0020' => 'nta', 'Nn1g02599' => 'nnu', 'Nn1g02608' => 'nnu', 'Nn3g17742' => 'nnu', 'Nn3g19534' => 'nnu', 'Nn3g19535' => 'nnu', 'Oeu008790.1' => 'oeu', 'Oeu008792.1' => 'oeu', 'Oeu032590.1' => 'oeu', 'Oeu035349.1' => 'oeu', 'Oeu049791.1' => 'oeu', 'Os01g0774500' => 'osa', 'Os03g0628800' => 'osa', 'Os03g0798600' => 'osa', 'Os05g0508800' => 'osa', 'Peaxi162Scf00036g02018' => 'pax', 'Peaxi162Scf00578g00032' => 'pax', 'Peaxi162Scf00578g00317' => 'pax', 'Peaxi162Scf00785g00114' => 'pax', 'Peaxi162Scf00813g00119' => 'pax', 'Peaxi162Scf00906g00227' => 'pax', 'PGR004G0875' => 'pgr', 'PGR004G2424' => 'pgr', 'PGR031G1239' => 'pgr', 'PGR031G2474' => 'pgr', 'PGR044G0423' => 'pgr', 'PGSC0003DMG400001128' => 'stu', 'PGSC0003DMG400007336' => 'stu', 'PGSC0003DMG400016318' => 'stu', 'PGSC0003DMG400016319' => 'stu', 'PGSC0003DMG400018074' => 'stu', 'Phvul.001G157700' => 'pvu', 'Phvul.002G148550' => 'pvu', 'Phvul.002G320200' => 'pvu', 'Phvul.003G089200' => 'pvu', 'Phvul.007G126000' => 'pvu', 'Phvul.007G126100' => 'pvu', 'Phvul.007G178000' => 'pvu', 'Phvul.007G178200' => 'pvu', 'Potri.002G043000' => 'ptr', 'Potri.002G043200' => 'ptr', 'Potri.003G123750' => 'ptr', 'Potri.005G055401' => 'ptr', 'Potri.005G219700' => 'ptr', 'Potri.005G220000' => 'ptr', 'Potri.008G161901' => 'ptr', 'Potri.008G162000' => 'ptr', 'Potri.008G162400' => 'ptr', 'Potri.010G076900' => 'ptr', 'Pp3c12_9180' => 'ppa', 'Pp3c13_19770' => 'ppa', 'Pp3c14_22950' => 'ppa', 'Pp3c16_12160' => 'ppa', 'Pp3c27_7820' => 'ppa', 'Pp3c2_3490' => 'ppa', 'Pp3c3_23700' => 'ppa', 'Pp3c3_36520' => 'ppa', 'Pp3c4_15250' => 'ppa', 'PRCOL_00007002' => 'pco', 'Prupe.1G030600' => 'ppe', 'Prupe.1G030700' => 'ppe', 'Prupe.6G345200' => 'ppe', 'Prupe.8G230300' => 'ppe', 'Prupe.8G230500' => 'ppe', 'Psat3g059600' => 'psa', 'Psat5g200920' => 'psa', 'Psat6g056440' => 'psa', 'Psat6g057360' => 'psa', 'Psat6g134120' => 'psa', 'Psat6g134160' => 'psa', 'Psat7g008640' => 'psa', 'Psat7g185240' => 'psa', 'PSO017G1330' => 'pso', 'PSO063G6097' => 'pso', 'PSO170G0835' => 'pso', 'PSO170G2499' => 'pso', 'PSO210G5058' => 'pso', 'PSO210G6154' => 'pso', 'PSO585G0031' => 'pso', 'PSO832G0264' => 'pso', 'PSO832G4288' => 'pso', 'QL03p027355' => 'qlo', 'QL03p027430' => 'qlo', 'QL04p081380' => 'qlo', 'QL06p015642' => 'qlo', 'QL06p015650' => 'qlo', 'QL06p015686' => 'qlo', 'QL12p042927' => 'qlo', 'QL93p1863_0035' => 'qlo', 'RcHm_v2.0_Chr3g0450581' => 'rch', 'RcHm_v2.0_Chr4g0390371' => 'rch', 'RcHm_v2.0_Chr4g0390381' => 'rch', 'RcHm_v2.0_Chr4g0390491' => 'rch', 'RcHm_v2.0_Chr4g0390501' => 'rch', 'RcHm_v2.0_Chr6g0289231' => 'rch', 'Rhsim04G0190400' => 'rsi', 'Rhsim04G0190500' => 'rsi', 'Rhsim04G0190600' => 'rsi', 'Rhsim13G0031400' => 'rsi', 'Rhsim13G0165600' => 'rsi', 'RhsimUnG0114600' => 'rsi', 'RhsimUnG0114700' => 'rsi', 'Sabra02G0034800' => 'sbr', 'Sabra02G0035100' => 'sbr', 'Sabra05G0168600' => 'sbr', 'Sabra05G0168800' => 'sbr', 'Sabra08G0123700' => 'sbr', 'Sabra10G0031900' => 'sbr', 'Sabra13G0039000' => 'sbr', 'SalBow2G0782' => 'sbo', 'SalBow2G1403' => 'sbo', 'SalBow4G0074' => 'sbo', 'SalBow4G2635' => 'sbo', 'SalBow5G3010' => 'sbo', 'Sc05g0000870' => 'sci', 'Sc05g0000890' => 'sci', 'Sc13g0005000' => 'sci', 'Sc13g0005030' => 'sci', 'Sc19g0003790' => 'sci', 'Sc19g0003800' => 'sci', 'Sed0003467' => 'sed', 'Sed0009355' => 'sed', 'Sed0009894' => 'sed', 'Sed0011972' => 'sed', 'Sed0021483' => 'sed', 'Sed0021750' => 'sed', 'Sed0026279' => 'sed', 'SEGI_05312' => 'sgi', 'SEGI_10112' => 'sgi', 'SEGI_15835' => 'sgi', 'SEGI_30386' => 'sgi', 'SEGI_34122' => 'sgi', 'SEGI_35063' => 'sgi', 'SGA_v2.0_scaffold101G29794' => 'sas', 'SGA_v2.0_scaffold1G00573' => 'sas', 'SGA_v2.0_scaffold79G25637' => 'sas', 'SGA_v2.0_scaffold88G27283' => 'sas', 'SGA_v2.0_scaffold88G27285' => 'sas', 'SGA_v2.0_scaffold88G27331' => 'sas', 'SHI09937' => 'shi', 'SMO119G0302' => 'smo', 'SMO137G0231' => 'smo', 'SMO367G1151' => 'smo', 'Solyc02g082000.3' => 'sly', 'Solyc06g031670.3' => 'sly', 'Solyc06g053810.3' => 'sly', 'Solyc07g025457.1' => 'sly', 'Solyc08g059740.1' => 'sly', 'Solyc08g059750.3' => 'sly', 'Solyc09g083370.3' => 'sly', 'Solyc12g038950.3' => 'sly', 'Sopen02g026630' => 'spe', 'Sopen06g018930' => 'spe', 'Sopen06g018940' => 'spe', 'Sopen08g009460' => 'spe', 'Sopen09g032290' => 'spe', 'Sp1g03080' => 'spa', 'Sp1g03090' => 'spa', 'Sp1g05480' => 'spa', 'Sp2g07860' => 'spa', 'Sp2g08430' => 'spa', 'Sp2g08440' => 'spa', 'Sp2g26200' => 'spa', 'Sp4g13170' => 'spa', 'Sp6g33840' => 'spa', 'SpUn1204_0010' => 'spa', 'TAR365G0908' => 'tar', 'TAR381G1270' => 'tar', 'TAR381G1651' => 'tar', 'TAR625G1131' => 'tar', 'TAR633G0962' => 'tar', 'TAR633G1729' => 'tar', 'TAR633G1864' => 'tar', 'TAR636G0221' => 'tar', 'TAR636G0314' => 'tar', 'TAR636G3202' => 'tar', 'THA.LOC104800805' => 'tha', 'THA.LOC104801096' => 'tha', 'THA.LOC104801555' => 'tha', 'THA.LOC104808491' => 'tha', 'THA.LOC104808595' => 'tha', 'THA.LOC104815985' => 'tha', 'THA.LOC104822250' => 'tha', 'THA.LOC104826071' => 'tha', 'Thecc.01G265200' => 'tca', 'Thecc.01G265300' => 'tca', 'Thecc.01G265700' => 'tca', 'Thecc.03G109100' => 'tca', 'Thecc.04G245900' => 'tca', 'Thecc.04G246000' => 'tca', 'Thhalv10003334m.g' => 'esa', 'Thhalv10005508m.g' => 'esa', 'Thhalv10005643m.g' => 'esa', 'Thhalv10007316m.g' => 'esa', 'Thhalv10009006m.g' => 'esa', 'Thhalv10009309m.g' => 'esa', 'Thhalv10014917m.g' => 'esa', 'Thhalv10014919m.g' => 'esa', 'Thhalv10015393m.g' => 'esa', 'Thhalv10016515m.g' => 'esa', 'Thhalv10029242m.g' => 'esa', 'TPR.G16654' => 'tpr', 'TPR.G20589' => 'tpr', 'TPR.G23029' => 'tpr', 'TPR.G27731' => 'tpr', 'TPR.G28889' => 'tpr', 'TPR.G28899' => 'tpr', 'TPR.G30846' => 'tpr', 'TPR.G5452' => 'tpr', 'TPR.G5713' => 'tpr', 'TPR.G9046' => 'tpr', 'TPR.G9061' => 'tpr', 'TWI09G1075' => 'twi', 'TWI12G0806' => 'twi', 'TWI18G0108' => 'twi', 'TWI53G1361' => 'twi', 'TWI73G0185' => 'twi', 'TWI73G0427' => 'twi', 'unitig_37.g12001' => 'ugi', 'unitig_747.g21660' => 'ugi', 'unitig_748.g7232' => 'ugi', 'unitig_748.g7315' => 'ugi', 'unitig_85.g27262' => 'ugi', 'unitig_92.g28220' => 'ugi', 'vmacro02632' => 'vma', 'vmacro08410' => 'vma', 'vmacro08411' => 'vma', 'vmacro15407' => 'vma', 'VMungo0251G3619' => 'vmu', 'VMungo0720G1204' => 'vmu', 'VMungo0720G1918' => 'vmu', 'VMungo0720G2387' => 'vmu', 'VMungo0720G2961' => 'vmu', 'VMungo1215G2154' => 'vmu', 'VMungo1383G2411' => 'vmu', 'Zm00001eb051130' => 'zma', 'Zm00001eb116830' => 'zma', 'Zm00001eb116850' => 'zma', 'Zm00001eb151740' => 'zma', 'Zm00001eb292360' => 'zma', 'Zm00001eb301640' => 'zma' ) $gf_id = 'HOM05D000856' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000856' ) $data_identifier = 'HOM05D000856' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 13, 'ath' => (int) 10, 'atr' => (int) 1, 'acertr' => (int) 8, 'cqu' => (int) 6, 'bca' => (int) 21, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 11, 'car' => (int) 9, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 8, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 5, 'fan' => (int) 16, 'fve' => (int) 6, 'gma' => (int) 11, 'ghi' => (int) 19, 'gra' => (int) 9, 'vvi' => (int) 7, 'han' => (int) 17, 'cav' => (int) 5, 'hma' => (int) 2, 'vpl' => (int) 2, 'sun' => (int) 7, 'lal' => (int) 9, 'lja' => (int) 5, 'lonja' => (int) 9, 'lsa' => (int) 5, 'mes' => (int) 8, 'mpo' => (int) 3, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 10, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 15, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 9, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 9, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 6, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 5, 'spa' => (int) 10, 'tar' => (int) 10, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 11, 'tpr' => (int) 11, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 4, 'vmu' => (int) 7, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb301640' $species_info = array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ) $local_species = 'cav' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000856', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p00010' => 'bna', 'A03p04160' => 'bna', 'A03p17160' => 'bna', 'A04p23370' => 'bna', 'A05p14860' => 'bna', 'A08p37020' => 'bna', 'A09p08050' => 'bna', 'A09p66800' => 'bna', 'A09p67940' => 'bna', 'A10p02680' => 'bna', 'A10p05320' => 'bna', 'Aa31LG1G20560' => 'aar', 'Aa31LG1G20610' => 'aar', 'Aa31LG1G7810' => 'aar', 'Aa31LG5G3590' => 'aar', 'Aa31LG5G6140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3819' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4683' => 'aag', 'Actinidia04480' => 'ach', 'Actinidia05466' => 'ach', 'Actinidia08445' => 'ach', 'Actinidia21170' => 'ach', 'Actinidia24812' => 'ach', 'Actinidia24951' => 'ach', 'Actinidia40088' => 'ach', 'Ah.02g111660' => 'amhyb', 'Ah.11g048900' => 'amhyb', 'Ah.11g049910' => 'amhyb', 'AL1G13870' => 'aly', 'AL1G13880' => 'aly', 'AL1G16760' => 'aly', 'AL390U10020' => 'aly', 'AL4G25520' => 'aly', 'AL6G19890' => 'aly', 'AL6G19900' => 'aly', 'AL6G19910' => 'aly', 'AL8G40100' => 'aly', 'Aqoxy2G03562' => 'aox', 'Aqoxy5G00316' => 'aox', 'Aqoxy5G00926' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1628KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1H403S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2FU6SJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.882I6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8YRY2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YN1SN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AF70II' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZA8L1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F916KL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHRD8H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KTZ8QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S22EMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8M29T' => 'arhy', 'AT1G04270' => 'ath', 'AT1G04280' => 'ath', 'AT1G06750' => 'ath', 'AT1G33850' => 'ath', 'AT2G30630' => 'ath', 'AT5G09490' => 'ath', 'AT5G09500' => 'ath', 'AT5G09510' => 'ath', 'AT5G43640' => 'ath', 'AT5G63070' => 'ath', 'ATR0605G315' => 'atr', 'Atru.chr11.175' => 'acertr', 'Atru.chr11.653' => 'acertr', 'Atru.chr3.1616' => 'acertr', 'Atru.chr4.2230' => 'acertr', 'Atru.chr4.2232' => 'acertr', 'Atru.chr5.1598' => 'acertr', 'Atru.chr5.1600' => 'acertr', 'Atru.chr5.2188' => 'acertr', 'AUR62008326' => 'cqu', 'AUR62011922' => 'cqu', 'AUR62011924' => 'cqu', 'AUR62021771' => 'cqu', 'AUR62032237' => 'cqu', 'AUR62032240' => 'cqu', 'BcaB01g05572' => 'bca', 'BcaB02g10337' => 'bca', 'BcaB04g19944' => 'bca', 'BcaB05g21548' => 'bca', 'BcaB05g21549' => 'bca', 'BcaB05g23227' => 'bca', 'BcaB06g26256' => 'bca', 'BcaB06g26257' => 'bca', 'BcaB06g28379' => 'bca', 'BcaC02g11159' => 'bca', 'BcaC03g13258' => 'bca', 'BcaC03g13259' => 'bca', 'BcaC05g24456' => 'bca', 'BcaC05g24457' => 'bca', 'BcaC07g36922' => 'bca', 'BcaC07g36923' => 'bca', 'BcaC07g42050' => 'bca', 'BcaC07g42176' => 'bca', 'BcaC07g42195' => 'bca', 'BcaC07g42196' => 'bca', 'BcaNung06674' => 'bca', 'BolC2t06351H' => 'bol', 'BolC2t06352H' => 'bol', 'BolC3t12993H' => 'bol', 'BolC4t23525H' => 'bol', 'BolC4t27475H' => 'bol', 'BolC5t29025H' => 'bol', 'BolC5t29026H' => 'bol', 'BolC8t46898H' => 'bol', 'BolC8t46899H' => 'bol', 'BolC8t52630H' => 'bol', 'BolC8t52765H' => 'bol', 'BolC9t53824H' => 'bol', 'BraA03t09760Z' => 'bra', 'BraA03t10990Z' => 'bra', 'BraA05t20413Z' => 'bra', 'BraA08t35602Z' => 'bra', 'BraA09t36458Z' => 'bra', 'BraA09t42018Z' => 'bra', 'BraA09t42129Z' => 'bra', 'BraA10t42536Z' => 'bra', 'BraA10t42537Z' => 'bra', 'C01p10690' => 'bna', 'C02p03890' => 'bna', 'C02p03900' => 'bna', 'C03p04620' => 'bna', 'C04p19870' => 'bna', 'C04p59670' => 'bna', 'C05p02460' => 'bna', 'C05p02470' => 'bna', 'C08p00980' => 'bna', 'C08p00990' => 'bna', 'C08p51030' => 'bna', 'C08p52360' => 'bna', 'C09p09120' => 'bna', 'CAN.G19.15' => 'can', 'CAN.G251.10' => 'can', 'CAN.G251.9' => 'can', 'CAN.G398.24' => 'can', 'CAN.G410.32' => 'can', 'CAN.G881.2' => 'can', 'CANSAT01G3025' => 'cansat', 'CANSAT78G1211' => 'cansat', 'CANSAT78G1218' => 'cansat', 'CANSAT78G1521' => 'cansat', 'CANSAT78G1670' => 'cansat', 'CARHR003600' => 'chi', 'CARHR003610' => 'chi', 'CARHR006290' => 'chi', 'CARHR006430' => 'chi', 'CARHR124110' => 'chi', 'CARHR203870' => 'chi', 'CARHR203880' => 'chi', 'CARHR203890' => 'chi', 'CARHR276880' => 'chi', 'Carub.0001s0346' => 'cru', 'Carub.0001s0347' => 'cru', 'Carub.0001s0607' => 'cru', 'Carub.0003s2768' => 'cru', 'Carub.0003s2769' => 'cru', 'Carub.0004s1178' => 'cru', 'Carub.0006s0806' => 'cru', 'Carub.0006s0807' => 'cru', 'Carub.0006s0808' => 'cru', 'Carub.0008s0501' => 'cru', 'Carub.0008s2379' => 'cru', 'Ca_08655_v3' => 'car', 'Ca_08922_v3' => 'car', 'Ca_08923_v3' => 'car', 'Ca_09119_v3' => 'car', 'Ca_09703_v3' => 'car', 'Ca_09705_v3' => 'car', 'Ca_09835_v3' => 'car', 'Ca_26403_v3' => 'car', 'Ca_30719_v3' => 'car', 'CBR_g17958' => 'cbr', 'CBR_g40516' => 'cbr', 'Cc00_g05350' => 'ccan', 'Cc01_g18690' => 'ccan', 'Cc03_g04830' => 'ccan', 'Cc03_g04850' => 'ccan', 'CDE02G4469' => 'cde', 'CDE06G0883' => 'cde', 'CDE06G1295' => 'cde', 'CDE06G1390' => 'cde', 'CDE07G0584' => 'cde', 'CDE07G1084' => 'cde', 'CDE08G1259' => 'cde', 'Cfa002341' => 'cfa', 'Cfa024337' => 'cfa', 'Ciclev10004749m.g' => 'ccl', 'Ciclev10006127m.g' => 'ccl', 'Ciclev10019720m.g' => 'ccl', 'Ciclev10022652m.g' => 'ccl', 'CiPaw.01G190400' => 'cil', 'CiPaw.01G190500' => 'cil', 'CiPaw.02G116400' => 'cil', 'CiPaw.02G116500' => 'cil', 'CiPaw.04G183000' => 'cil', 'CiPaw.04G183300' => 'cil', 'ClCG05G004610' => 'cla', 'ClCG05G004620' => 'cla', 'ClCG06G006730' => 'cla', 'ClCG06G006740' => 'cla', 'ClCG11G003690' => 'cla', 'COL.COLO4_08276' => 'col', 'COL.COLO4_08277' => 'col', 'COL.COLO4_15787' => 'col', 'COL.COLO4_15789' => 'col', 'Cpa.g.c44815' => 'cpa', 'Cpa.g.sc52.144' => 'cpa', 'Cpa.g.sc58.46' => 'cpa', 'Cpa.g.sc58.47' => 'cpa', 'Cre08.g360900' => 'cre', 'CsaV3_2G013030' => 'csa', 'CsaV3_2G013050' => 'csa', 'CsaV3_2G015620' => 'csa', 'CsaV3_3G012590' => 'csa', 'CsaV3_3G012600' => 'csa', 'CSS0001641' => 'camsi', 'CSS0008310' => 'camsi', 'CSS0013011' => 'camsi', 'CSS0017147' => 'camsi', 'CSS0022970' => 'camsi', 'CSS0025655' => 'camsi', 'CSS0028665' => 'camsi', 'CSS0029117' => 'camsi', 'CSS0032024' => 'camsi', 'CSS0039681' => 'camsi', 'CSS0046516' => 'camsi', 'CSS0050307' => 'camsi', 'DCAR_005871' => 'dca', 'DCAR_007342' => 'dca', 'DCAR_024228' => 'dca', 'DCAR_027277' => 'dca', 'DCAR_030718' => 'dca', 'Dinv20287' => 'din', 'Dinv22461' => 'din', 'Dinv22464' => 'din', 'Dinv29912' => 'din', 'Dinv29913' => 'din', 'Dinv34580' => 'din', 'Dinv34582' => 'din', 'Dinv44632' => 'din', 'Duzib052G0266' => 'dzi', 'Duzib133G0907' => 'dzi', 'Duzib133G1034' => 'dzi', 'Duzib138G0207' => 'dzi', 'Duzib138G0491' => 'dzi', 'Duzib151G0812' => 'dzi', 'Duzib151G1166' => 'dzi', 'Duzib168G0192' => 'dzi', 'Duzib211G0077' => 'dzi', 'Duzib212G0429' => 'dzi', 'Duzib212G0472' => 'dzi', 'ECA233G2617' => 'eca', 'ECA236G4188' => 'eca', 'ECA240G0936' => 'eca', 'ECA240G1129' => 'eca', 'ECA247G0623' => 'eca', 'EL10Ac5g10451' => 'bvu', 'EL10Ac5g10453' => 'bvu', 'EL10Ac5g10894' => 'bvu', 'Eucgr.H00192' => 'egr', 'Eucgr.H00193' => 'egr', 'Eucgr.H00194' => 'egr', 'Eucgr.J01562' => 'egr', 'Eucgr.K03301' => 'egr', 'FAN02G0632' => 'fan', 'FAN05G5378' => 'fan', 'FAN09G3247' => 'fan', 'FAN12G0435' => 'fan', 'FAN12G2426' => 'fan', 'FAN14G1707' => 'fan', 'FAN14G4725' => 'fan', 'FAN15G2071' => 'fan', 'FAN17G3065' => 'fan', 'FAN19G1376' => 'fan', 'FAN20G0354' => 'fan', 'FAN20G2429' => 'fan', 'FAN20G2658' => 'fan', 'FAN24G2343' => 'fan', 'FAN27G2362' => 'fan', 'FAN28G1765' => 'fan', 'FvH4_1g16020' => 'fve', 'FvH4_2g04890' => 'fve', 'FvH4_2g22270' => 'fve', 'FvH4_4g02630' => 'fve', 'FvH4_4g02640' => 'fve', 'FvH4_6g02650' => 'fve', 'Glyma.02G140600' => 'gma', 'Glyma.03G159900' => 'gma', 'Glyma.05G234800' => 'gma', 'Glyma.07G269600' => 'gma', 'Glyma.08G042300' => 'gma', 'Glyma.10G033500' => 'gma', 'Glyma.10G185200' => 'gma', 'Glyma.17G004300' => 'gma', 'Glyma.19G161900' => 'gma', 'Glyma.20G205100' => 'gma', 'Glyma.20G205200' => 'gma', 'Gohir.A01G139101' => 'ghi', 'Gohir.A02G035600' => 'ghi', 'Gohir.A02G117901' => 'ghi', 'Gohir.A07G210100' => 'ghi', 'Gohir.A07G210200' => 'ghi', 'Gohir.A08G061100' => 'ghi', 'Gohir.A09G223000' => 'ghi', 'Gohir.A09G223100' => 'ghi', 'Gohir.A10G113900' => 'ghi', 'Gohir.A10G114000' => 'ghi', 'Gohir.D02G042300' => 'ghi', 'Gohir.D07G216100' => 'ghi', 'Gohir.D07G216200' => 'ghi', 'Gohir.D08G070400' => 'ghi', 'Gohir.D09G225000' => 'ghi', 'Gohir.D09G225100' => 'ghi', 'Gohir.D10G152300' => 'ghi', 'Gohir.D10G153200' => 'ghi', 'Gohir.D11G133701' => 'ghi', 'Gorai.004G074100' => 'gra', 'Gorai.005G046800' => 'gra', 'Gorai.006G246500' => 'gra', 'Gorai.006G246600' => 'gra', 'Gorai.007G142900' => 'gra', 'Gorai.011G171000' => 'gra', 'Gorai.011G171100' => 'gra', 'Gorai.013G104300' => 'gra', 'Gorai.013G104400' => 'gra', 'GSVIVG01000754001' => 'vvi', 'GSVIVG01000756001' => 'vvi', 'GSVIVG01010903001' => 'vvi', 'GSVIVG01017623001' => 'vvi', 'GSVIVG01018113001' => 'vvi', 'GSVIVG01018116001' => 'vvi', 'GSVIVG01018118001' => 'vvi', 'HanXRQChr03g0076211' => 'han', 'HanXRQChr03g0092431' => 'han', 'HanXRQChr03g0092441' => 'han', 'HanXRQChr03g0092591' => 'han', 'HanXRQChr03g0092671' => 'han', 'HanXRQChr03g0092681' => 'han', 'HanXRQChr03g0092691' => 'han', 'HanXRQChr03g0092701' => 'han', 'HanXRQChr03g0092721' => 'han', 'HanXRQChr03g0092731' => 'han', 'HanXRQChr04g0113681' => 'han', 'HanXRQChr10g0281371' => 'han', 'HanXRQChr11g0337141' => 'han', 'HanXRQChr13g0424521' => 'han', 'HanXRQChr13g0424531' => 'han', 'HanXRQChr13g0424541' => 'han', 'HanXRQChr16g0498221' => 'han', 'Haze_04377' => 'cav', 'Haze_11298' => 'cav', 'Haze_24547' => 'cav', 'Haze_24550' => 'cav', 'Haze_26587' => 'cav', 'Hma1.2p1_0650F.1_g195410' => 'hma', 'Hma1.2p1_0893F.1_g233470' => 'hma', 'HPP92_006508' => 'vpl', 'HPP92_024780' => 'vpl', 'Hund02688' => 'sun', 'Hund09380' => 'sun', 'Hund09381' => 'sun', 'Hund09832' => 'sun', 'Hund09833' => 'sun', 'Hund11351' => 'sun', 'Hund11513' => 'sun', 'Lalb_Chr06g0162591' => 'lal', 'Lalb_Chr06g0162601' => 'lal', 'Lalb_Chr06g0169321' => 'lal', 'Lalb_Chr09g0330951' => 'lal', 'Lalb_Chr16g0387631' => 'lal', 'Lalb_Chr21g0306241' => 'lal', 'Lalb_Chr25g0290051' => 'lal', 'Lalb_Chr25g0290061' => 'lal', 'Lalb_Chr25g0290071' => 'lal', 'Lj1g0003876' => 'lja', 'Lj1P1207T36' => 'lonja', 'Lj2C1156G12' => 'lonja', 'Lj3A793G39' => 'lonja', 'Lj3C580G2' => 'lonja', 'Lj3C780G2' => 'lonja', 'Lj3C780T4' => 'lonja', 'Lj3C793G9' => 'lonja', 'Lj4g0012960' => 'lja', 'Lj5g0021252' => 'lja', 'Lj5g0021484' => 'lja', 'Lj5g0024528' => 'lja', 'Lj6A399T12' => 'lonja', 'Lj6A656G65' => 'lonja', 'Lsat_1_v5_gn_3_125500' => 'lsa', 'Lsat_1_v5_gn_3_125540' => 'lsa', 'Lsat_1_v5_gn_5_72701' => 'lsa', 'Lsat_1_v5_gn_8_91560' => 'lsa', 'Lsat_1_v5_gn_9_9640' => 'lsa', 'Manes.01G200600' => 'mes', 'Manes.01G200700' => 'mes', 'Manes.03G168900' => 'mes', 'Manes.03G169000' => 'mes', 'Manes.05G085801' => 'mes', 'Manes.05G086200' => 'mes', 'Manes.15G036700' => 'mes', 'Manes.15G036900' => 'mes', 'Mapoly0004s0172' => 'mpo', 'Mapoly0023s0001' => 'mpo', 'Mapoly0142s0012' => 'mpo', 'MBI01_g32854_MAGBIO' => 'mbi', 'MBI11_g24427_MAGBIO' => 'mbi', 'MBI11_g47319_MAGBIO' => 'mbi', 'MCO01G433' => 'mco', 'MD00G1187800' => 'mdo', 'MD04G1226500' => 'mdo', 'MD05G1203900' => 'mdo', 'MD10G1191100' => 'mdo', 'MD12G1243500' => 'mdo', 'MD13G1207000' => 'mdo', 'MD13G1207100' => 'mdo', 'MD16G1208600' => 'mdo', 'Medtr1g050352' => 'mtr', 'Medtr1g070385' => 'mtr', 'Medtr1g070450' => 'mtr', 'Medtr1g075200' => 'mtr', 'Medtr1g075250' => 'mtr', 'Medtr1g075260' => 'mtr', 'Medtr1g475250' => 'mtr', 'Medtr4g075450' => 'mtr', 'Medtr7g096300' => 'mtr', 'Medtr8g105110' => 'mtr', 'MELO3C006470.2' => 'cme', 'MELO3C006471.2' => 'cme', 'MELO3C020772.2' => 'cme', 'MELO3C026780.2' => 'cme', 'MELO3C026781.2' => 'cme', 'Migut.D00390' => 'egut', 'Migut.G00435' => 'egut', 'Migut.G00436' => 'egut', 'Migut.G00718' => 'egut', 'MSTRG.21891' => 'ama', 'MSTRG.26910' => 'ama', 'MSTRG.4099' => 'ama', 'MSTRG.9925' => 'ama', 'Nitab4.5_0000165g0010' => 'nta', 'Nitab4.5_0000209g0180' => 'nta', 'Nitab4.5_0000244g0440' => 'nta', 'Nitab4.5_0000525g0220' => 'nta', 'Nitab4.5_0001597g0020' => 'nta', 'Nitab4.5_0001878g0040' => 'nta', 'Nitab4.5_0001878g0060' => 'nta', 'Nitab4.5_0002838g0100' => 'nta', 'Nitab4.5_0002838g0120' => 'nta', 'Nitab4.5_0004798g0030' => 'nta', 'Nitab4.5_0005420g0010' => 'nta', 'Nitab4.5_0005507g0010' => 'nta', 'Nitab4.5_0005574g0020' => 'nta', 'Nitab4.5_0005838g0010' => 'nta', 'Nitab4.5_0010580g0020' => 'nta', 'Nn1g02599' => 'nnu', 'Nn1g02608' => 'nnu', 'Nn3g17742' => 'nnu', 'Nn3g19534' => 'nnu', 'Nn3g19535' => 'nnu', 'Oeu008790.1' => 'oeu', 'Oeu008792.1' => 'oeu', 'Oeu032590.1' => 'oeu', 'Oeu035349.1' => 'oeu', 'Oeu049791.1' => 'oeu', 'Os01g0774500' => 'osa', 'Os03g0628800' => 'osa', 'Os03g0798600' => 'osa', 'Os05g0508800' => 'osa', 'Peaxi162Scf00036g02018' => 'pax', 'Peaxi162Scf00578g00032' => 'pax', 'Peaxi162Scf00578g00317' => 'pax', 'Peaxi162Scf00785g00114' => 'pax', 'Peaxi162Scf00813g00119' => 'pax', 'Peaxi162Scf00906g00227' => 'pax', 'PGR004G0875' => 'pgr', 'PGR004G2424' => 'pgr', 'PGR031G1239' => 'pgr', 'PGR031G2474' => 'pgr', 'PGR044G0423' => 'pgr', 'PGSC0003DMG400001128' => 'stu', 'PGSC0003DMG400007336' => 'stu', 'PGSC0003DMG400016318' => 'stu', 'PGSC0003DMG400016319' => 'stu', 'PGSC0003DMG400018074' => 'stu', 'Phvul.001G157700' => 'pvu', 'Phvul.002G148550' => 'pvu', 'Phvul.002G320200' => 'pvu', 'Phvul.003G089200' => 'pvu', 'Phvul.007G126000' => 'pvu', 'Phvul.007G126100' => 'pvu', 'Phvul.007G178000' => 'pvu', 'Phvul.007G178200' => 'pvu', 'Potri.002G043000' => 'ptr', 'Potri.002G043200' => 'ptr', 'Potri.003G123750' => 'ptr', 'Potri.005G055401' => 'ptr', 'Potri.005G219700' => 'ptr', 'Potri.005G220000' => 'ptr', 'Potri.008G161901' => 'ptr', 'Potri.008G162000' => 'ptr', 'Potri.008G162400' => 'ptr', 'Potri.010G076900' => 'ptr', 'Pp3c12_9180' => 'ppa', 'Pp3c13_19770' => 'ppa', 'Pp3c14_22950' => 'ppa', 'Pp3c16_12160' => 'ppa', 'Pp3c27_7820' => 'ppa', 'Pp3c2_3490' => 'ppa', 'Pp3c3_23700' => 'ppa', 'Pp3c3_36520' => 'ppa', 'Pp3c4_15250' => 'ppa', 'PRCOL_00007002' => 'pco', 'Prupe.1G030600' => 'ppe', 'Prupe.1G030700' => 'ppe', 'Prupe.6G345200' => 'ppe', 'Prupe.8G230300' => 'ppe', 'Prupe.8G230500' => 'ppe', 'Psat3g059600' => 'psa', 'Psat5g200920' => 'psa', 'Psat6g056440' => 'psa', 'Psat6g057360' => 'psa', 'Psat6g134120' => 'psa', 'Psat6g134160' => 'psa', 'Psat7g008640' => 'psa', 'Psat7g185240' => 'psa', 'PSO017G1330' => 'pso', 'PSO063G6097' => 'pso', 'PSO170G0835' => 'pso', 'PSO170G2499' => 'pso', 'PSO210G5058' => 'pso', 'PSO210G6154' => 'pso', 'PSO585G0031' => 'pso', 'PSO832G0264' => 'pso', 'PSO832G4288' => 'pso', 'QL03p027355' => 'qlo', 'QL03p027430' => 'qlo', 'QL04p081380' => 'qlo', 'QL06p015642' => 'qlo', 'QL06p015650' => 'qlo', 'QL06p015686' => 'qlo', 'QL12p042927' => 'qlo', 'QL93p1863_0035' => 'qlo', 'RcHm_v2.0_Chr3g0450581' => 'rch', 'RcHm_v2.0_Chr4g0390371' => 'rch', 'RcHm_v2.0_Chr4g0390381' => 'rch', 'RcHm_v2.0_Chr4g0390491' => 'rch', 'RcHm_v2.0_Chr4g0390501' => 'rch', 'RcHm_v2.0_Chr6g0289231' => 'rch', 'Rhsim04G0190400' => 'rsi', 'Rhsim04G0190500' => 'rsi', 'Rhsim04G0190600' => 'rsi', 'Rhsim13G0031400' => 'rsi', 'Rhsim13G0165600' => 'rsi', 'RhsimUnG0114600' => 'rsi', 'RhsimUnG0114700' => 'rsi', 'Sabra02G0034800' => 'sbr', 'Sabra02G0035100' => 'sbr', 'Sabra05G0168600' => 'sbr', 'Sabra05G0168800' => 'sbr', 'Sabra08G0123700' => 'sbr', 'Sabra10G0031900' => 'sbr', 'Sabra13G0039000' => 'sbr', 'SalBow2G0782' => 'sbo', 'SalBow2G1403' => 'sbo', 'SalBow4G0074' => 'sbo', 'SalBow4G2635' => 'sbo', 'SalBow5G3010' => 'sbo', 'Sc05g0000870' => 'sci', 'Sc05g0000890' => 'sci', 'Sc13g0005000' => 'sci', 'Sc13g0005030' => 'sci', 'Sc19g0003790' => 'sci', 'Sc19g0003800' => 'sci', 'Sed0003467' => 'sed', 'Sed0009355' => 'sed', 'Sed0009894' => 'sed', 'Sed0011972' => 'sed', 'Sed0021483' => 'sed', 'Sed0021750' => 'sed', 'Sed0026279' => 'sed', 'SEGI_05312' => 'sgi', 'SEGI_10112' => 'sgi', 'SEGI_15835' => 'sgi', 'SEGI_30386' => 'sgi', 'SEGI_34122' => 'sgi', 'SEGI_35063' => 'sgi', 'SGA_v2.0_scaffold101G29794' => 'sas', 'SGA_v2.0_scaffold1G00573' => 'sas', 'SGA_v2.0_scaffold79G25637' => 'sas', 'SGA_v2.0_scaffold88G27283' => 'sas', 'SGA_v2.0_scaffold88G27285' => 'sas', 'SGA_v2.0_scaffold88G27331' => 'sas', 'SHI09937' => 'shi', 'SMO119G0302' => 'smo', 'SMO137G0231' => 'smo', 'SMO367G1151' => 'smo', 'Solyc02g082000.3' => 'sly', 'Solyc06g031670.3' => 'sly', 'Solyc06g053810.3' => 'sly', 'Solyc07g025457.1' => 'sly', 'Solyc08g059740.1' => 'sly', 'Solyc08g059750.3' => 'sly', 'Solyc09g083370.3' => 'sly', 'Solyc12g038950.3' => 'sly', 'Sopen02g026630' => 'spe', 'Sopen06g018930' => 'spe', 'Sopen06g018940' => 'spe', 'Sopen08g009460' => 'spe', 'Sopen09g032290' => 'spe', 'Sp1g03080' => 'spa', 'Sp1g03090' => 'spa', 'Sp1g05480' => 'spa', 'Sp2g07860' => 'spa', 'Sp2g08430' => 'spa', 'Sp2g08440' => 'spa', 'Sp2g26200' => 'spa', 'Sp4g13170' => 'spa', 'Sp6g33840' => 'spa', 'SpUn1204_0010' => 'spa', 'TAR365G0908' => 'tar', 'TAR381G1270' => 'tar', 'TAR381G1651' => 'tar', 'TAR625G1131' => 'tar', 'TAR633G0962' => 'tar', 'TAR633G1729' => 'tar', 'TAR633G1864' => 'tar', 'TAR636G0221' => 'tar', 'TAR636G0314' => 'tar', 'TAR636G3202' => 'tar', 'THA.LOC104800805' => 'tha', 'THA.LOC104801096' => 'tha', 'THA.LOC104801555' => 'tha', 'THA.LOC104808491' => 'tha', 'THA.LOC104808595' => 'tha', 'THA.LOC104815985' => 'tha', 'THA.LOC104822250' => 'tha', 'THA.LOC104826071' => 'tha', 'Thecc.01G265200' => 'tca', 'Thecc.01G265300' => 'tca', 'Thecc.01G265700' => 'tca', 'Thecc.03G109100' => 'tca', 'Thecc.04G245900' => 'tca', 'Thecc.04G246000' => 'tca', 'Thhalv10003334m.g' => 'esa', 'Thhalv10005508m.g' => 'esa', 'Thhalv10005643m.g' => 'esa', 'Thhalv10007316m.g' => 'esa', 'Thhalv10009006m.g' => 'esa', 'Thhalv10009309m.g' => 'esa', 'Thhalv10014917m.g' => 'esa', 'Thhalv10014919m.g' => 'esa', 'Thhalv10015393m.g' => 'esa', 'Thhalv10016515m.g' => 'esa', 'Thhalv10029242m.g' => 'esa', 'TPR.G16654' => 'tpr', 'TPR.G20589' => 'tpr', 'TPR.G23029' => 'tpr', 'TPR.G27731' => 'tpr', 'TPR.G28889' => 'tpr', 'TPR.G28899' => 'tpr', 'TPR.G30846' => 'tpr', 'TPR.G5452' => 'tpr', 'TPR.G5713' => 'tpr', 'TPR.G9046' => 'tpr', 'TPR.G9061' => 'tpr', 'TWI09G1075' => 'twi', 'TWI12G0806' => 'twi', 'TWI18G0108' => 'twi', 'TWI53G1361' => 'twi', 'TWI73G0185' => 'twi', 'TWI73G0427' => 'twi', 'unitig_37.g12001' => 'ugi', 'unitig_747.g21660' => 'ugi', 'unitig_748.g7232' => 'ugi', 'unitig_748.g7315' => 'ugi', 'unitig_85.g27262' => 'ugi', 'unitig_92.g28220' => 'ugi', 'vmacro02632' => 'vma', 'vmacro08410' => 'vma', 'vmacro08411' => 'vma', 'vmacro15407' => 'vma', 'VMungo0251G3619' => 'vmu', 'VMungo0720G1204' => 'vmu', 'VMungo0720G1918' => 'vmu', 'VMungo0720G2387' => 'vmu', 'VMungo0720G2961' => 'vmu', 'VMungo1215G2154' => 'vmu', 'VMungo1383G2411' => 'vmu', 'Zm00001eb051130' => 'zma', 'Zm00001eb116830' => 'zma', 'Zm00001eb116850' => 'zma', 'Zm00001eb151740' => 'zma', 'Zm00001eb292360' => 'zma', 'Zm00001eb301640' => 'zma' ), 'gf_id' => 'HOM05D000856', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000856' ), 'data_identifier' => 'HOM05D000856', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000856', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p00010' => 'bna', 'A03p04160' => 'bna', 'A03p17160' => 'bna', 'A04p23370' => 'bna', 'A05p14860' => 'bna', 'A08p37020' => 'bna', 'A09p08050' => 'bna', 'A09p66800' => 'bna', 'A09p67940' => 'bna', 'A10p02680' => 'bna', 'A10p05320' => 'bna', 'Aa31LG1G20560' => 'aar', 'Aa31LG1G20610' => 'aar', 'Aa31LG1G7810' => 'aar', 'Aa31LG5G3590' => 'aar', 'Aa31LG5G6140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3819' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4683' => 'aag', 'Actinidia04480' => 'ach', 'Actinidia05466' => 'ach', 'Actinidia08445' => 'ach', 'Actinidia21170' => 'ach', 'Actinidia24812' => 'ach', 'Actinidia24951' => 'ach', 'Actinidia40088' => 'ach', 'Ah.02g111660' => 'amhyb', 'Ah.11g048900' => 'amhyb', 'Ah.11g049910' => 'amhyb', 'AL1G13870' => 'aly', 'AL1G13880' => 'aly', 'AL1G16760' => 'aly', 'AL390U10020' => 'aly', 'AL4G25520' => 'aly', 'AL6G19890' => 'aly', 'AL6G19900' => 'aly', 'AL6G19910' => 'aly', 'AL8G40100' => 'aly', 'Aqoxy2G03562' => 'aox', 'Aqoxy5G00316' => 'aox', 'Aqoxy5G00926' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1628KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1H403S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2FU6SJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.882I6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8YRY2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YN1SN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AF70II' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZA8L1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F916KL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHRD8H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KTZ8QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S22EMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8M29T' => 'arhy', 'AT1G04270' => 'ath', 'AT1G04280' => 'ath', 'AT1G06750' => 'ath', 'AT1G33850' => 'ath', 'AT2G30630' => 'ath', 'AT5G09490' => 'ath', 'AT5G09500' => 'ath', 'AT5G09510' => 'ath', 'AT5G43640' => 'ath', 'AT5G63070' => 'ath', 'ATR0605G315' => 'atr', 'Atru.chr11.175' => 'acertr', 'Atru.chr11.653' => 'acertr', 'Atru.chr3.1616' => 'acertr', 'Atru.chr4.2230' => 'acertr', 'Atru.chr4.2232' => 'acertr', 'Atru.chr5.1598' => 'acertr', 'Atru.chr5.1600' => 'acertr', 'Atru.chr5.2188' => 'acertr', 'AUR62008326' => 'cqu', 'AUR62011922' => 'cqu', 'AUR62011924' => 'cqu', 'AUR62021771' => 'cqu', 'AUR62032237' => 'cqu', 'AUR62032240' => 'cqu', 'BcaB01g05572' => 'bca', 'BcaB02g10337' => 'bca', 'BcaB04g19944' => 'bca', 'BcaB05g21548' => 'bca', 'BcaB05g21549' => 'bca', 'BcaB05g23227' => 'bca', 'BcaB06g26256' => 'bca', 'BcaB06g26257' => 'bca', 'BcaB06g28379' => 'bca', 'BcaC02g11159' => 'bca', 'BcaC03g13258' => 'bca', 'BcaC03g13259' => 'bca', 'BcaC05g24456' => 'bca', 'BcaC05g24457' => 'bca', 'BcaC07g36922' => 'bca', 'BcaC07g36923' => 'bca', 'BcaC07g42050' => 'bca', 'BcaC07g42176' => 'bca', 'BcaC07g42195' => 'bca', 'BcaC07g42196' => 'bca', 'BcaNung06674' => 'bca', 'BolC2t06351H' => 'bol', 'BolC2t06352H' => 'bol', 'BolC3t12993H' => 'bol', 'BolC4t23525H' => 'bol', 'BolC4t27475H' => 'bol', 'BolC5t29025H' => 'bol', 'BolC5t29026H' => 'bol', 'BolC8t46898H' => 'bol', 'BolC8t46899H' => 'bol', 'BolC8t52630H' => 'bol', 'BolC8t52765H' => 'bol', 'BolC9t53824H' => 'bol', 'BraA03t09760Z' => 'bra', 'BraA03t10990Z' => 'bra', 'BraA05t20413Z' => 'bra', 'BraA08t35602Z' => 'bra', 'BraA09t36458Z' => 'bra', 'BraA09t42018Z' => 'bra', 'BraA09t42129Z' => 'bra', 'BraA10t42536Z' => 'bra', 'BraA10t42537Z' => 'bra', 'C01p10690' => 'bna', 'C02p03890' => 'bna', 'C02p03900' => 'bna', 'C03p04620' => 'bna', 'C04p19870' => 'bna', 'C04p59670' => 'bna', 'C05p02460' => 'bna', 'C05p02470' => 'bna', 'C08p00980' => 'bna', 'C08p00990' => 'bna', 'C08p51030' => 'bna', 'C08p52360' => 'bna', 'C09p09120' => 'bna', 'CAN.G19.15' => 'can', 'CAN.G251.10' => 'can', 'CAN.G251.9' => 'can', 'CAN.G398.24' => 'can', 'CAN.G410.32' => 'can', 'CAN.G881.2' => 'can', 'CANSAT01G3025' => 'cansat', 'CANSAT78G1211' => 'cansat', 'CANSAT78G1218' => 'cansat', 'CANSAT78G1521' => 'cansat', 'CANSAT78G1670' => 'cansat', 'CARHR003600' => 'chi', 'CARHR003610' => 'chi', 'CARHR006290' => 'chi', 'CARHR006430' => 'chi', 'CARHR124110' => 'chi', 'CARHR203870' => 'chi', 'CARHR203880' => 'chi', 'CARHR203890' => 'chi', 'CARHR276880' => 'chi', 'Carub.0001s0346' => 'cru', 'Carub.0001s0347' => 'cru', 'Carub.0001s0607' => 'cru', 'Carub.0003s2768' => 'cru', 'Carub.0003s2769' => 'cru', 'Carub.0004s1178' => 'cru', 'Carub.0006s0806' => 'cru', 'Carub.0006s0807' => 'cru', 'Carub.0006s0808' => 'cru', 'Carub.0008s0501' => 'cru', 'Carub.0008s2379' => 'cru', 'Ca_08655_v3' => 'car', 'Ca_08922_v3' => 'car', 'Ca_08923_v3' => 'car', 'Ca_09119_v3' => 'car', 'Ca_09703_v3' => 'car', 'Ca_09705_v3' => 'car', 'Ca_09835_v3' => 'car', 'Ca_26403_v3' => 'car', 'Ca_30719_v3' => 'car', 'CBR_g17958' => 'cbr', 'CBR_g40516' => 'cbr', 'Cc00_g05350' => 'ccan', 'Cc01_g18690' => 'ccan', 'Cc03_g04830' => 'ccan', 'Cc03_g04850' => 'ccan', 'CDE02G4469' => 'cde', 'CDE06G0883' => 'cde', 'CDE06G1295' => 'cde', 'CDE06G1390' => 'cde', 'CDE07G0584' => 'cde', 'CDE07G1084' => 'cde', 'CDE08G1259' => 'cde', 'Cfa002341' => 'cfa', 'Cfa024337' => 'cfa', 'Ciclev10004749m.g' => 'ccl', 'Ciclev10006127m.g' => 'ccl', 'Ciclev10019720m.g' => 'ccl', 'Ciclev10022652m.g' => 'ccl', 'CiPaw.01G190400' => 'cil', 'CiPaw.01G190500' => 'cil', 'CiPaw.02G116400' => 'cil', 'CiPaw.02G116500' => 'cil', 'CiPaw.04G183000' => 'cil', 'CiPaw.04G183300' => 'cil', 'ClCG05G004610' => 'cla', 'ClCG05G004620' => 'cla', 'ClCG06G006730' => 'cla', 'ClCG06G006740' => 'cla', 'ClCG11G003690' => 'cla', 'COL.COLO4_08276' => 'col', 'COL.COLO4_08277' => 'col', 'COL.COLO4_15787' => 'col', 'COL.COLO4_15789' => 'col', 'Cpa.g.c44815' => 'cpa', 'Cpa.g.sc52.144' => 'cpa', 'Cpa.g.sc58.46' => 'cpa', 'Cpa.g.sc58.47' => 'cpa', 'Cre08.g360900' => 'cre', 'CsaV3_2G013030' => 'csa', 'CsaV3_2G013050' => 'csa', 'CsaV3_2G015620' => 'csa', 'CsaV3_3G012590' => 'csa', 'CsaV3_3G012600' => 'csa', 'CSS0001641' => 'camsi', 'CSS0008310' => 'camsi', 'CSS0013011' => 'camsi', 'CSS0017147' => 'camsi', 'CSS0022970' => 'camsi', 'CSS0025655' => 'camsi', 'CSS0028665' => 'camsi', 'CSS0029117' => 'camsi', 'CSS0032024' => 'camsi', 'CSS0039681' => 'camsi', 'CSS0046516' => 'camsi', 'CSS0050307' => 'camsi', 'DCAR_005871' => 'dca', 'DCAR_007342' => 'dca', 'DCAR_024228' => 'dca', 'DCAR_027277' => 'dca', 'DCAR_030718' => 'dca', 'Dinv20287' => 'din', 'Dinv22461' => 'din', 'Dinv22464' => 'din', 'Dinv29912' => 'din', 'Dinv29913' => 'din', 'Dinv34580' => 'din', 'Dinv34582' => 'din', 'Dinv44632' => 'din', 'Duzib052G0266' => 'dzi', 'Duzib133G0907' => 'dzi', 'Duzib133G1034' => 'dzi', 'Duzib138G0207' => 'dzi', 'Duzib138G0491' => 'dzi', 'Duzib151G0812' => 'dzi', 'Duzib151G1166' => 'dzi', 'Duzib168G0192' => 'dzi', 'Duzib211G0077' => 'dzi', 'Duzib212G0429' => 'dzi', 'Duzib212G0472' => 'dzi', 'ECA233G2617' => 'eca', 'ECA236G4188' => 'eca', 'ECA240G0936' => 'eca', 'ECA240G1129' => 'eca', 'ECA247G0623' => 'eca', 'EL10Ac5g10451' => 'bvu', 'EL10Ac5g10453' => 'bvu', 'EL10Ac5g10894' => 'bvu', 'Eucgr.H00192' => 'egr', 'Eucgr.H00193' => 'egr', 'Eucgr.H00194' => 'egr', 'Eucgr.J01562' => 'egr', 'Eucgr.K03301' => 'egr', 'FAN02G0632' => 'fan', 'FAN05G5378' => 'fan', 'FAN09G3247' => 'fan', 'FAN12G0435' => 'fan', 'FAN12G2426' => 'fan', 'FAN14G1707' => 'fan', 'FAN14G4725' => 'fan', 'FAN15G2071' => 'fan', 'FAN17G3065' => 'fan', 'FAN19G1376' => 'fan', 'FAN20G0354' => 'fan', 'FAN20G2429' => 'fan', 'FAN20G2658' => 'fan', 'FAN24G2343' => 'fan', 'FAN27G2362' => 'fan', 'FAN28G1765' => 'fan', 'FvH4_1g16020' => 'fve', 'FvH4_2g04890' => 'fve', 'FvH4_2g22270' => 'fve', 'FvH4_4g02630' => 'fve', 'FvH4_4g02640' => 'fve', 'FvH4_6g02650' => 'fve', 'Glyma.02G140600' => 'gma', 'Glyma.03G159900' => 'gma', 'Glyma.05G234800' => 'gma', 'Glyma.07G269600' => 'gma', 'Glyma.08G042300' => 'gma', 'Glyma.10G033500' => 'gma', 'Glyma.10G185200' => 'gma', 'Glyma.17G004300' => 'gma', 'Glyma.19G161900' => 'gma', 'Glyma.20G205100' => 'gma', 'Glyma.20G205200' => 'gma', 'Gohir.A01G139101' => 'ghi', 'Gohir.A02G035600' => 'ghi', 'Gohir.A02G117901' => 'ghi', 'Gohir.A07G210100' => 'ghi', 'Gohir.A07G210200' => 'ghi', 'Gohir.A08G061100' => 'ghi', 'Gohir.A09G223000' => 'ghi', 'Gohir.A09G223100' => 'ghi', 'Gohir.A10G113900' => 'ghi', 'Gohir.A10G114000' => 'ghi', 'Gohir.D02G042300' => 'ghi', 'Gohir.D07G216100' => 'ghi', 'Gohir.D07G216200' => 'ghi', 'Gohir.D08G070400' => 'ghi', 'Gohir.D09G225000' => 'ghi', 'Gohir.D09G225100' => 'ghi', 'Gohir.D10G152300' => 'ghi', 'Gohir.D10G153200' => 'ghi', 'Gohir.D11G133701' => 'ghi', 'Gorai.004G074100' => 'gra', 'Gorai.005G046800' => 'gra', 'Gorai.006G246500' => 'gra', 'Gorai.006G246600' => 'gra', 'Gorai.007G142900' => 'gra', 'Gorai.011G171000' => 'gra', 'Gorai.011G171100' => 'gra', 'Gorai.013G104300' => 'gra', 'Gorai.013G104400' => 'gra', 'GSVIVG01000754001' => 'vvi', 'GSVIVG01000756001' => 'vvi', 'GSVIVG01010903001' => 'vvi', 'GSVIVG01017623001' => 'vvi', 'GSVIVG01018113001' => 'vvi', 'GSVIVG01018116001' => 'vvi', 'GSVIVG01018118001' => 'vvi', 'HanXRQChr03g0076211' => 'han', 'HanXRQChr03g0092431' => 'han', 'HanXRQChr03g0092441' => 'han', 'HanXRQChr03g0092591' => 'han', 'HanXRQChr03g0092671' => 'han', 'HanXRQChr03g0092681' => 'han', 'HanXRQChr03g0092691' => 'han', 'HanXRQChr03g0092701' => 'han', 'HanXRQChr03g0092721' => 'han', 'HanXRQChr03g0092731' => 'han', 'HanXRQChr04g0113681' => 'han', 'HanXRQChr10g0281371' => 'han', 'HanXRQChr11g0337141' => 'han', 'HanXRQChr13g0424521' => 'han', 'HanXRQChr13g0424531' => 'han', 'HanXRQChr13g0424541' => 'han', 'HanXRQChr16g0498221' => 'han', 'Haze_04377' => 'cav', 'Haze_11298' => 'cav', 'Haze_24547' => 'cav', 'Haze_24550' => 'cav', 'Haze_26587' => 'cav', 'Hma1.2p1_0650F.1_g195410' => 'hma', 'Hma1.2p1_0893F.1_g233470' => 'hma', 'HPP92_006508' => 'vpl', 'HPP92_024780' => 'vpl', 'Hund02688' => 'sun', 'Hund09380' => 'sun', 'Hund09381' => 'sun', 'Hund09832' => 'sun', 'Hund09833' => 'sun', 'Hund11351' => 'sun', 'Hund11513' => 'sun', 'Lalb_Chr06g0162591' => 'lal', 'Lalb_Chr06g0162601' => 'lal', 'Lalb_Chr06g0169321' => 'lal', 'Lalb_Chr09g0330951' => 'lal', 'Lalb_Chr16g0387631' => 'lal', 'Lalb_Chr21g0306241' => 'lal', 'Lalb_Chr25g0290051' => 'lal', 'Lalb_Chr25g0290061' => 'lal', 'Lalb_Chr25g0290071' => 'lal', 'Lj1g0003876' => 'lja', 'Lj1P1207T36' => 'lonja', 'Lj2C1156G12' => 'lonja', 'Lj3A793G39' => 'lonja', 'Lj3C580G2' => 'lonja', 'Lj3C780G2' => 'lonja', 'Lj3C780T4' => 'lonja', 'Lj3C793G9' => 'lonja', 'Lj4g0012960' => 'lja', 'Lj5g0021252' => 'lja', 'Lj5g0021484' => 'lja', 'Lj5g0024528' => 'lja', 'Lj6A399T12' => 'lonja', 'Lj6A656G65' => 'lonja', 'Lsat_1_v5_gn_3_125500' => 'lsa', 'Lsat_1_v5_gn_3_125540' => 'lsa', 'Lsat_1_v5_gn_5_72701' => 'lsa', 'Lsat_1_v5_gn_8_91560' => 'lsa', 'Lsat_1_v5_gn_9_9640' => 'lsa', 'Manes.01G200600' => 'mes', 'Manes.01G200700' => 'mes', 'Manes.03G168900' => 'mes', 'Manes.03G169000' => 'mes', 'Manes.05G085801' => 'mes', 'Manes.05G086200' => 'mes', 'Manes.15G036700' => 'mes', 'Manes.15G036900' => 'mes', 'Mapoly0004s0172' => 'mpo', 'Mapoly0023s0001' => 'mpo', 'Mapoly0142s0012' => 'mpo', 'MBI01_g32854_MAGBIO' => 'mbi', 'MBI11_g24427_MAGBIO' => 'mbi', 'MBI11_g47319_MAGBIO' => 'mbi', 'MCO01G433' => 'mco', 'MD00G1187800' => 'mdo', 'MD04G1226500' => 'mdo', 'MD05G1203900' => 'mdo', 'MD10G1191100' => 'mdo', 'MD12G1243500' => 'mdo', 'MD13G1207000' => 'mdo', 'MD13G1207100' => 'mdo', 'MD16G1208600' => 'mdo', 'Medtr1g050352' => 'mtr', 'Medtr1g070385' => 'mtr', 'Medtr1g070450' => 'mtr', 'Medtr1g075200' => 'mtr', 'Medtr1g075250' => 'mtr', 'Medtr1g075260' => 'mtr', 'Medtr1g475250' => 'mtr', 'Medtr4g075450' => 'mtr', 'Medtr7g096300' => 'mtr', 'Medtr8g105110' => 'mtr', 'MELO3C006470.2' => 'cme', 'MELO3C006471.2' => 'cme', 'MELO3C020772.2' => 'cme', 'MELO3C026780.2' => 'cme', 'MELO3C026781.2' => 'cme', 'Migut.D00390' => 'egut', 'Migut.G00435' => 'egut', 'Migut.G00436' => 'egut', 'Migut.G00718' => 'egut', 'MSTRG.21891' => 'ama', 'MSTRG.26910' => 'ama', 'MSTRG.4099' => 'ama', 'MSTRG.9925' => 'ama', 'Nitab4.5_0000165g0010' => 'nta', 'Nitab4.5_0000209g0180' => 'nta', 'Nitab4.5_0000244g0440' => 'nta', 'Nitab4.5_0000525g0220' => 'nta', 'Nitab4.5_0001597g0020' => 'nta', 'Nitab4.5_0001878g0040' => 'nta', 'Nitab4.5_0001878g0060' => 'nta', 'Nitab4.5_0002838g0100' => 'nta', 'Nitab4.5_0002838g0120' => 'nta', 'Nitab4.5_0004798g0030' => 'nta', 'Nitab4.5_0005420g0010' => 'nta', 'Nitab4.5_0005507g0010' => 'nta', 'Nitab4.5_0005574g0020' => 'nta', 'Nitab4.5_0005838g0010' => 'nta', 'Nitab4.5_0010580g0020' => 'nta', 'Nn1g02599' => 'nnu', 'Nn1g02608' => 'nnu', 'Nn3g17742' => 'nnu', 'Nn3g19534' => 'nnu', 'Nn3g19535' => 'nnu', 'Oeu008790.1' => 'oeu', 'Oeu008792.1' => 'oeu', 'Oeu032590.1' => 'oeu', 'Oeu035349.1' => 'oeu', 'Oeu049791.1' => 'oeu', 'Os01g0774500' => 'osa', 'Os03g0628800' => 'osa', 'Os03g0798600' => 'osa', 'Os05g0508800' => 'osa', 'Peaxi162Scf00036g02018' => 'pax', 'Peaxi162Scf00578g00032' => 'pax', 'Peaxi162Scf00578g00317' => 'pax', 'Peaxi162Scf00785g00114' => 'pax', 'Peaxi162Scf00813g00119' => 'pax', 'Peaxi162Scf00906g00227' => 'pax', 'PGR004G0875' => 'pgr', 'PGR004G2424' => 'pgr', 'PGR031G1239' => 'pgr', 'PGR031G2474' => 'pgr', 'PGR044G0423' => 'pgr', 'PGSC0003DMG400001128' => 'stu', 'PGSC0003DMG400007336' => 'stu', 'PGSC0003DMG400016318' => 'stu', 'PGSC0003DMG400016319' => 'stu', 'PGSC0003DMG400018074' => 'stu', 'Phvul.001G157700' => 'pvu', 'Phvul.002G148550' => 'pvu', 'Phvul.002G320200' => 'pvu', 'Phvul.003G089200' => 'pvu', 'Phvul.007G126000' => 'pvu', 'Phvul.007G126100' => 'pvu', 'Phvul.007G178000' => 'pvu', 'Phvul.007G178200' => 'pvu', 'Potri.002G043000' => 'ptr', 'Potri.002G043200' => 'ptr', 'Potri.003G123750' => 'ptr', 'Potri.005G055401' => 'ptr', 'Potri.005G219700' => 'ptr', 'Potri.005G220000' => 'ptr', 'Potri.008G161901' => 'ptr', 'Potri.008G162000' => 'ptr', 'Potri.008G162400' => 'ptr', 'Potri.010G076900' => 'ptr', 'Pp3c12_9180' => 'ppa', 'Pp3c13_19770' => 'ppa', 'Pp3c14_22950' => 'ppa', 'Pp3c16_12160' => 'ppa', 'Pp3c27_7820' => 'ppa', 'Pp3c2_3490' => 'ppa', 'Pp3c3_23700' => 'ppa', 'Pp3c3_36520' => 'ppa', 'Pp3c4_15250' => 'ppa', 'PRCOL_00007002' => 'pco', 'Prupe.1G030600' => 'ppe', 'Prupe.1G030700' => 'ppe', 'Prupe.6G345200' => 'ppe', 'Prupe.8G230300' => 'ppe', 'Prupe.8G230500' => 'ppe', 'Psat3g059600' => 'psa', 'Psat5g200920' => 'psa', 'Psat6g056440' => 'psa', 'Psat6g057360' => 'psa', 'Psat6g134120' => 'psa', 'Psat6g134160' => 'psa', 'Psat7g008640' => 'psa', 'Psat7g185240' => 'psa', 'PSO017G1330' => 'pso', 'PSO063G6097' => 'pso', 'PSO170G0835' => 'pso', 'PSO170G2499' => 'pso', 'PSO210G5058' => 'pso', 'PSO210G6154' => 'pso', 'PSO585G0031' => 'pso', 'PSO832G0264' => 'pso', 'PSO832G4288' => 'pso', 'QL03p027355' => 'qlo', 'QL03p027430' => 'qlo', 'QL04p081380' => 'qlo', 'QL06p015642' => 'qlo', 'QL06p015650' => 'qlo', 'QL06p015686' => 'qlo', 'QL12p042927' => 'qlo', 'QL93p1863_0035' => 'qlo', 'RcHm_v2.0_Chr3g0450581' => 'rch', 'RcHm_v2.0_Chr4g0390371' => 'rch', 'RcHm_v2.0_Chr4g0390381' => 'rch', 'RcHm_v2.0_Chr4g0390491' => 'rch', 'RcHm_v2.0_Chr4g0390501' => 'rch', 'RcHm_v2.0_Chr6g0289231' => 'rch', 'Rhsim04G0190400' => 'rsi', 'Rhsim04G0190500' => 'rsi', 'Rhsim04G0190600' => 'rsi', 'Rhsim13G0031400' => 'rsi', 'Rhsim13G0165600' => 'rsi', 'RhsimUnG0114600' => 'rsi', 'RhsimUnG0114700' => 'rsi', 'Sabra02G0034800' => 'sbr', 'Sabra02G0035100' => 'sbr', 'Sabra05G0168600' => 'sbr', 'Sabra05G0168800' => 'sbr', 'Sabra08G0123700' => 'sbr', 'Sabra10G0031900' => 'sbr', 'Sabra13G0039000' => 'sbr', 'SalBow2G0782' => 'sbo', 'SalBow2G1403' => 'sbo', 'SalBow4G0074' => 'sbo', 'SalBow4G2635' => 'sbo', 'SalBow5G3010' => 'sbo', 'Sc05g0000870' => 'sci', 'Sc05g0000890' => 'sci', 'Sc13g0005000' => 'sci', 'Sc13g0005030' => 'sci', 'Sc19g0003790' => 'sci', 'Sc19g0003800' => 'sci', 'Sed0003467' => 'sed', 'Sed0009355' => 'sed', 'Sed0009894' => 'sed', 'Sed0011972' => 'sed', 'Sed0021483' => 'sed', 'Sed0021750' => 'sed', 'Sed0026279' => 'sed', 'SEGI_05312' => 'sgi', 'SEGI_10112' => 'sgi', 'SEGI_15835' => 'sgi', 'SEGI_30386' => 'sgi', 'SEGI_34122' => 'sgi', 'SEGI_35063' => 'sgi', 'SGA_v2.0_scaffold101G29794' => 'sas', 'SGA_v2.0_scaffold1G00573' => 'sas', 'SGA_v2.0_scaffold79G25637' => 'sas', 'SGA_v2.0_scaffold88G27283' => 'sas', 'SGA_v2.0_scaffold88G27285' => 'sas', 'SGA_v2.0_scaffold88G27331' => 'sas', 'SHI09937' => 'shi', 'SMO119G0302' => 'smo', 'SMO137G0231' => 'smo', 'SMO367G1151' => 'smo', 'Solyc02g082000.3' => 'sly', 'Solyc06g031670.3' => 'sly', 'Solyc06g053810.3' => 'sly', 'Solyc07g025457.1' => 'sly', 'Solyc08g059740.1' => 'sly', 'Solyc08g059750.3' => 'sly', 'Solyc09g083370.3' => 'sly', 'Solyc12g038950.3' => 'sly', 'Sopen02g026630' => 'spe', 'Sopen06g018930' => 'spe', 'Sopen06g018940' => 'spe', 'Sopen08g009460' => 'spe', 'Sopen09g032290' => 'spe', 'Sp1g03080' => 'spa', 'Sp1g03090' => 'spa', 'Sp1g05480' => 'spa', 'Sp2g07860' => 'spa', 'Sp2g08430' => 'spa', 'Sp2g08440' => 'spa', 'Sp2g26200' => 'spa', 'Sp4g13170' => 'spa', 'Sp6g33840' => 'spa', 'SpUn1204_0010' => 'spa', 'TAR365G0908' => 'tar', 'TAR381G1270' => 'tar', 'TAR381G1651' => 'tar', 'TAR625G1131' => 'tar', 'TAR633G0962' => 'tar', 'TAR633G1729' => 'tar', 'TAR633G1864' => 'tar', 'TAR636G0221' => 'tar', 'TAR636G0314' => 'tar', 'TAR636G3202' => 'tar', 'THA.LOC104800805' => 'tha', 'THA.LOC104801096' => 'tha', 'THA.LOC104801555' => 'tha', 'THA.LOC104808491' => 'tha', 'THA.LOC104808595' => 'tha', 'THA.LOC104815985' => 'tha', 'THA.LOC104822250' => 'tha', 'THA.LOC104826071' => 'tha', 'Thecc.01G265200' => 'tca', 'Thecc.01G265300' => 'tca', 'Thecc.01G265700' => 'tca', 'Thecc.03G109100' => 'tca', 'Thecc.04G245900' => 'tca', 'Thecc.04G246000' => 'tca', 'Thhalv10003334m.g' => 'esa', 'Thhalv10005508m.g' => 'esa', 'Thhalv10005643m.g' => 'esa', 'Thhalv10007316m.g' => 'esa', 'Thhalv10009006m.g' => 'esa', 'Thhalv10009309m.g' => 'esa', 'Thhalv10014917m.g' => 'esa', 'Thhalv10014919m.g' => 'esa', 'Thhalv10015393m.g' => 'esa', 'Thhalv10016515m.g' => 'esa', 'Thhalv10029242m.g' => 'esa', 'TPR.G16654' => 'tpr', 'TPR.G20589' => 'tpr', 'TPR.G23029' => 'tpr', 'TPR.G27731' => 'tpr', 'TPR.G28889' => 'tpr', 'TPR.G28899' => 'tpr', 'TPR.G30846' => 'tpr', 'TPR.G5452' => 'tpr', 'TPR.G5713' => 'tpr', 'TPR.G9046' => 'tpr', 'TPR.G9061' => 'tpr', 'TWI09G1075' => 'twi', 'TWI12G0806' => 'twi', 'TWI18G0108' => 'twi', 'TWI53G1361' => 'twi', 'TWI73G0185' => 'twi', 'TWI73G0427' => 'twi', 'unitig_37.g12001' => 'ugi', 'unitig_747.g21660' => 'ugi', 'unitig_748.g7232' => 'ugi', 'unitig_748.g7315' => 'ugi', 'unitig_85.g27262' => 'ugi', 'unitig_92.g28220' => 'ugi', 'vmacro02632' => 'vma', 'vmacro08410' => 'vma', 'vmacro08411' => 'vma', 'vmacro15407' => 'vma', 'VMungo0251G3619' => 'vmu', 'VMungo0720G1204' => 'vmu', 'VMungo0720G1918' => 'vmu', 'VMungo0720G2387' => 'vmu', 'VMungo0720G2961' => 'vmu', 'VMungo1215G2154' => 'vmu', 'VMungo1383G2411' => 'vmu', 'Zm00001eb051130' => 'zma', 'Zm00001eb116830' => 'zma', 'Zm00001eb116850' => 'zma', 'Zm00001eb151740' => 'zma', 'Zm00001eb292360' => 'zma', 'Zm00001eb301640' => 'zma' ) $gf_id = 'HOM05D000856' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000856' ) $data_identifier = 'HOM05D000856' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 13, 'ath' => (int) 10, 'atr' => (int) 1, 'acertr' => (int) 8, 'cqu' => (int) 6, 'bca' => (int) 21, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 11, 'car' => (int) 9, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 8, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 5, 'fan' => (int) 16, 'fve' => (int) 6, 'gma' => (int) 11, 'ghi' => (int) 19, 'gra' => (int) 9, 'vvi' => (int) 7, 'han' => (int) 17, 'cav' => (int) 5, 'hma' => (int) 2, 'vpl' => (int) 2, 'sun' => (int) 7, 'lal' => (int) 9, 'lja' => (int) 5, 'lonja' => (int) 9, 'lsa' => (int) 5, 'mes' => (int) 8, 'mpo' => (int) 3, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 10, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 15, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 9, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 9, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 6, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 5, 'spa' => (int) 10, 'tar' => (int) 10, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 11, 'tpr' => (int) 11, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 4, 'vmu' => (int) 7, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb301640' $species_info = array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ) $local_species = 'cav' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000856', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p00010' => 'bna', 'A03p04160' => 'bna', 'A03p17160' => 'bna', 'A04p23370' => 'bna', 'A05p14860' => 'bna', 'A08p37020' => 'bna', 'A09p08050' => 'bna', 'A09p66800' => 'bna', 'A09p67940' => 'bna', 'A10p02680' => 'bna', 'A10p05320' => 'bna', 'Aa31LG1G20560' => 'aar', 'Aa31LG1G20610' => 'aar', 'Aa31LG1G7810' => 'aar', 'Aa31LG5G3590' => 'aar', 'Aa31LG5G6140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3819' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4683' => 'aag', 'Actinidia04480' => 'ach', 'Actinidia05466' => 'ach', 'Actinidia08445' => 'ach', 'Actinidia21170' => 'ach', 'Actinidia24812' => 'ach', 'Actinidia24951' => 'ach', 'Actinidia40088' => 'ach', 'Ah.02g111660' => 'amhyb', 'Ah.11g048900' => 'amhyb', 'Ah.11g049910' => 'amhyb', 'AL1G13870' => 'aly', 'AL1G13880' => 'aly', 'AL1G16760' => 'aly', 'AL390U10020' => 'aly', 'AL4G25520' => 'aly', 'AL6G19890' => 'aly', 'AL6G19900' => 'aly', 'AL6G19910' => 'aly', 'AL8G40100' => 'aly', 'Aqoxy2G03562' => 'aox', 'Aqoxy5G00316' => 'aox', 'Aqoxy5G00926' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1628KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1H403S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2FU6SJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.882I6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8YRY2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YN1SN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AF70II' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZA8L1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F916KL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHRD8H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KTZ8QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S22EMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8M29T' => 'arhy', 'AT1G04270' => 'ath', 'AT1G04280' => 'ath', 'AT1G06750' => 'ath', 'AT1G33850' => 'ath', 'AT2G30630' => 'ath', 'AT5G09490' => 'ath', 'AT5G09500' => 'ath', 'AT5G09510' => 'ath', 'AT5G43640' => 'ath', 'AT5G63070' => 'ath', 'ATR0605G315' => 'atr', 'Atru.chr11.175' => 'acertr', 'Atru.chr11.653' => 'acertr', 'Atru.chr3.1616' => 'acertr', 'Atru.chr4.2230' => 'acertr', 'Atru.chr4.2232' => 'acertr', 'Atru.chr5.1598' => 'acertr', 'Atru.chr5.1600' => 'acertr', 'Atru.chr5.2188' => 'acertr', 'AUR62008326' => 'cqu', 'AUR62011922' => 'cqu', 'AUR62011924' => 'cqu', 'AUR62021771' => 'cqu', 'AUR62032237' => 'cqu', 'AUR62032240' => 'cqu', 'BcaB01g05572' => 'bca', 'BcaB02g10337' => 'bca', 'BcaB04g19944' => 'bca', 'BcaB05g21548' => 'bca', 'BcaB05g21549' => 'bca', 'BcaB05g23227' => 'bca', 'BcaB06g26256' => 'bca', 'BcaB06g26257' => 'bca', 'BcaB06g28379' => 'bca', 'BcaC02g11159' => 'bca', 'BcaC03g13258' => 'bca', 'BcaC03g13259' => 'bca', 'BcaC05g24456' => 'bca', 'BcaC05g24457' => 'bca', 'BcaC07g36922' => 'bca', 'BcaC07g36923' => 'bca', 'BcaC07g42050' => 'bca', 'BcaC07g42176' => 'bca', 'BcaC07g42195' => 'bca', 'BcaC07g42196' => 'bca', 'BcaNung06674' => 'bca', 'BolC2t06351H' => 'bol', 'BolC2t06352H' => 'bol', 'BolC3t12993H' => 'bol', 'BolC4t23525H' => 'bol', 'BolC4t27475H' => 'bol', 'BolC5t29025H' => 'bol', 'BolC5t29026H' => 'bol', 'BolC8t46898H' => 'bol', 'BolC8t46899H' => 'bol', 'BolC8t52630H' => 'bol', 'BolC8t52765H' => 'bol', 'BolC9t53824H' => 'bol', 'BraA03t09760Z' => 'bra', 'BraA03t10990Z' => 'bra', 'BraA05t20413Z' => 'bra', 'BraA08t35602Z' => 'bra', 'BraA09t36458Z' => 'bra', 'BraA09t42018Z' => 'bra', 'BraA09t42129Z' => 'bra', 'BraA10t42536Z' => 'bra', 'BraA10t42537Z' => 'bra', 'C01p10690' => 'bna', 'C02p03890' => 'bna', 'C02p03900' => 'bna', 'C03p04620' => 'bna', 'C04p19870' => 'bna', 'C04p59670' => 'bna', 'C05p02460' => 'bna', 'C05p02470' => 'bna', 'C08p00980' => 'bna', 'C08p00990' => 'bna', 'C08p51030' => 'bna', 'C08p52360' => 'bna', 'C09p09120' => 'bna', 'CAN.G19.15' => 'can', 'CAN.G251.10' => 'can', 'CAN.G251.9' => 'can', 'CAN.G398.24' => 'can', 'CAN.G410.32' => 'can', 'CAN.G881.2' => 'can', 'CANSAT01G3025' => 'cansat', 'CANSAT78G1211' => 'cansat', 'CANSAT78G1218' => 'cansat', 'CANSAT78G1521' => 'cansat', 'CANSAT78G1670' => 'cansat', 'CARHR003600' => 'chi', 'CARHR003610' => 'chi', 'CARHR006290' => 'chi', 'CARHR006430' => 'chi', 'CARHR124110' => 'chi', 'CARHR203870' => 'chi', 'CARHR203880' => 'chi', 'CARHR203890' => 'chi', 'CARHR276880' => 'chi', 'Carub.0001s0346' => 'cru', 'Carub.0001s0347' => 'cru', 'Carub.0001s0607' => 'cru', 'Carub.0003s2768' => 'cru', 'Carub.0003s2769' => 'cru', 'Carub.0004s1178' => 'cru', 'Carub.0006s0806' => 'cru', 'Carub.0006s0807' => 'cru', 'Carub.0006s0808' => 'cru', 'Carub.0008s0501' => 'cru', 'Carub.0008s2379' => 'cru', 'Ca_08655_v3' => 'car', 'Ca_08922_v3' => 'car', 'Ca_08923_v3' => 'car', 'Ca_09119_v3' => 'car', 'Ca_09703_v3' => 'car', 'Ca_09705_v3' => 'car', 'Ca_09835_v3' => 'car', 'Ca_26403_v3' => 'car', 'Ca_30719_v3' => 'car', 'CBR_g17958' => 'cbr', 'CBR_g40516' => 'cbr', 'Cc00_g05350' => 'ccan', 'Cc01_g18690' => 'ccan', 'Cc03_g04830' => 'ccan', 'Cc03_g04850' => 'ccan', 'CDE02G4469' => 'cde', 'CDE06G0883' => 'cde', 'CDE06G1295' => 'cde', 'CDE06G1390' => 'cde', 'CDE07G0584' => 'cde', 'CDE07G1084' => 'cde', 'CDE08G1259' => 'cde', 'Cfa002341' => 'cfa', 'Cfa024337' => 'cfa', 'Ciclev10004749m.g' => 'ccl', 'Ciclev10006127m.g' => 'ccl', 'Ciclev10019720m.g' => 'ccl', 'Ciclev10022652m.g' => 'ccl', 'CiPaw.01G190400' => 'cil', 'CiPaw.01G190500' => 'cil', 'CiPaw.02G116400' => 'cil', 'CiPaw.02G116500' => 'cil', 'CiPaw.04G183000' => 'cil', 'CiPaw.04G183300' => 'cil', 'ClCG05G004610' => 'cla', 'ClCG05G004620' => 'cla', 'ClCG06G006730' => 'cla', 'ClCG06G006740' => 'cla', 'ClCG11G003690' => 'cla', 'COL.COLO4_08276' => 'col', 'COL.COLO4_08277' => 'col', 'COL.COLO4_15787' => 'col', 'COL.COLO4_15789' => 'col', 'Cpa.g.c44815' => 'cpa', 'Cpa.g.sc52.144' => 'cpa', 'Cpa.g.sc58.46' => 'cpa', 'Cpa.g.sc58.47' => 'cpa', 'Cre08.g360900' => 'cre', 'CsaV3_2G013030' => 'csa', 'CsaV3_2G013050' => 'csa', 'CsaV3_2G015620' => 'csa', 'CsaV3_3G012590' => 'csa', 'CsaV3_3G012600' => 'csa', 'CSS0001641' => 'camsi', 'CSS0008310' => 'camsi', 'CSS0013011' => 'camsi', 'CSS0017147' => 'camsi', 'CSS0022970' => 'camsi', 'CSS0025655' => 'camsi', 'CSS0028665' => 'camsi', 'CSS0029117' => 'camsi', 'CSS0032024' => 'camsi', 'CSS0039681' => 'camsi', 'CSS0046516' => 'camsi', 'CSS0050307' => 'camsi', 'DCAR_005871' => 'dca', 'DCAR_007342' => 'dca', 'DCAR_024228' => 'dca', 'DCAR_027277' => 'dca', 'DCAR_030718' => 'dca', 'Dinv20287' => 'din', 'Dinv22461' => 'din', 'Dinv22464' => 'din', 'Dinv29912' => 'din', 'Dinv29913' => 'din', 'Dinv34580' => 'din', 'Dinv34582' => 'din', 'Dinv44632' => 'din', 'Duzib052G0266' => 'dzi', 'Duzib133G0907' => 'dzi', 'Duzib133G1034' => 'dzi', 'Duzib138G0207' => 'dzi', 'Duzib138G0491' => 'dzi', 'Duzib151G0812' => 'dzi', 'Duzib151G1166' => 'dzi', 'Duzib168G0192' => 'dzi', 'Duzib211G0077' => 'dzi', 'Duzib212G0429' => 'dzi', 'Duzib212G0472' => 'dzi', 'ECA233G2617' => 'eca', 'ECA236G4188' => 'eca', 'ECA240G0936' => 'eca', 'ECA240G1129' => 'eca', 'ECA247G0623' => 'eca', 'EL10Ac5g10451' => 'bvu', 'EL10Ac5g10453' => 'bvu', 'EL10Ac5g10894' => 'bvu', 'Eucgr.H00192' => 'egr', 'Eucgr.H00193' => 'egr', 'Eucgr.H00194' => 'egr', 'Eucgr.J01562' => 'egr', 'Eucgr.K03301' => 'egr', 'FAN02G0632' => 'fan', 'FAN05G5378' => 'fan', 'FAN09G3247' => 'fan', 'FAN12G0435' => 'fan', 'FAN12G2426' => 'fan', 'FAN14G1707' => 'fan', 'FAN14G4725' => 'fan', 'FAN15G2071' => 'fan', 'FAN17G3065' => 'fan', 'FAN19G1376' => 'fan', 'FAN20G0354' => 'fan', 'FAN20G2429' => 'fan', 'FAN20G2658' => 'fan', 'FAN24G2343' => 'fan', 'FAN27G2362' => 'fan', 'FAN28G1765' => 'fan', 'FvH4_1g16020' => 'fve', 'FvH4_2g04890' => 'fve', 'FvH4_2g22270' => 'fve', 'FvH4_4g02630' => 'fve', 'FvH4_4g02640' => 'fve', 'FvH4_6g02650' => 'fve', 'Glyma.02G140600' => 'gma', 'Glyma.03G159900' => 'gma', 'Glyma.05G234800' => 'gma', 'Glyma.07G269600' => 'gma', 'Glyma.08G042300' => 'gma', 'Glyma.10G033500' => 'gma', 'Glyma.10G185200' => 'gma', 'Glyma.17G004300' => 'gma', 'Glyma.19G161900' => 'gma', 'Glyma.20G205100' => 'gma', 'Glyma.20G205200' => 'gma', 'Gohir.A01G139101' => 'ghi', 'Gohir.A02G035600' => 'ghi', 'Gohir.A02G117901' => 'ghi', 'Gohir.A07G210100' => 'ghi', 'Gohir.A07G210200' => 'ghi', 'Gohir.A08G061100' => 'ghi', 'Gohir.A09G223000' => 'ghi', 'Gohir.A09G223100' => 'ghi', 'Gohir.A10G113900' => 'ghi', 'Gohir.A10G114000' => 'ghi', 'Gohir.D02G042300' => 'ghi', 'Gohir.D07G216100' => 'ghi', 'Gohir.D07G216200' => 'ghi', 'Gohir.D08G070400' => 'ghi', 'Gohir.D09G225000' => 'ghi', 'Gohir.D09G225100' => 'ghi', 'Gohir.D10G152300' => 'ghi', 'Gohir.D10G153200' => 'ghi', 'Gohir.D11G133701' => 'ghi', 'Gorai.004G074100' => 'gra', 'Gorai.005G046800' => 'gra', 'Gorai.006G246500' => 'gra', 'Gorai.006G246600' => 'gra', 'Gorai.007G142900' => 'gra', 'Gorai.011G171000' => 'gra', 'Gorai.011G171100' => 'gra', 'Gorai.013G104300' => 'gra', 'Gorai.013G104400' => 'gra', 'GSVIVG01000754001' => 'vvi', 'GSVIVG01000756001' => 'vvi', 'GSVIVG01010903001' => 'vvi', 'GSVIVG01017623001' => 'vvi', 'GSVIVG01018113001' => 'vvi', 'GSVIVG01018116001' => 'vvi', 'GSVIVG01018118001' => 'vvi', 'HanXRQChr03g0076211' => 'han', 'HanXRQChr03g0092431' => 'han', 'HanXRQChr03g0092441' => 'han', 'HanXRQChr03g0092591' => 'han', 'HanXRQChr03g0092671' => 'han', 'HanXRQChr03g0092681' => 'han', 'HanXRQChr03g0092691' => 'han', 'HanXRQChr03g0092701' => 'han', 'HanXRQChr03g0092721' => 'han', 'HanXRQChr03g0092731' => 'han', 'HanXRQChr04g0113681' => 'han', 'HanXRQChr10g0281371' => 'han', 'HanXRQChr11g0337141' => 'han', 'HanXRQChr13g0424521' => 'han', 'HanXRQChr13g0424531' => 'han', 'HanXRQChr13g0424541' => 'han', 'HanXRQChr16g0498221' => 'han', 'Haze_04377' => 'cav', 'Haze_11298' => 'cav', 'Haze_24547' => 'cav', 'Haze_24550' => 'cav', 'Haze_26587' => 'cav', 'Hma1.2p1_0650F.1_g195410' => 'hma', 'Hma1.2p1_0893F.1_g233470' => 'hma', 'HPP92_006508' => 'vpl', 'HPP92_024780' => 'vpl', 'Hund02688' => 'sun', 'Hund09380' => 'sun', 'Hund09381' => 'sun', 'Hund09832' => 'sun', 'Hund09833' => 'sun', 'Hund11351' => 'sun', 'Hund11513' => 'sun', 'Lalb_Chr06g0162591' => 'lal', 'Lalb_Chr06g0162601' => 'lal', 'Lalb_Chr06g0169321' => 'lal', 'Lalb_Chr09g0330951' => 'lal', 'Lalb_Chr16g0387631' => 'lal', 'Lalb_Chr21g0306241' => 'lal', 'Lalb_Chr25g0290051' => 'lal', 'Lalb_Chr25g0290061' => 'lal', 'Lalb_Chr25g0290071' => 'lal', 'Lj1g0003876' => 'lja', 'Lj1P1207T36' => 'lonja', 'Lj2C1156G12' => 'lonja', 'Lj3A793G39' => 'lonja', 'Lj3C580G2' => 'lonja', 'Lj3C780G2' => 'lonja', 'Lj3C780T4' => 'lonja', 'Lj3C793G9' => 'lonja', 'Lj4g0012960' => 'lja', 'Lj5g0021252' => 'lja', 'Lj5g0021484' => 'lja', 'Lj5g0024528' => 'lja', 'Lj6A399T12' => 'lonja', 'Lj6A656G65' => 'lonja', 'Lsat_1_v5_gn_3_125500' => 'lsa', 'Lsat_1_v5_gn_3_125540' => 'lsa', 'Lsat_1_v5_gn_5_72701' => 'lsa', 'Lsat_1_v5_gn_8_91560' => 'lsa', 'Lsat_1_v5_gn_9_9640' => 'lsa', 'Manes.01G200600' => 'mes', 'Manes.01G200700' => 'mes', 'Manes.03G168900' => 'mes', 'Manes.03G169000' => 'mes', 'Manes.05G085801' => 'mes', 'Manes.05G086200' => 'mes', 'Manes.15G036700' => 'mes', 'Manes.15G036900' => 'mes', 'Mapoly0004s0172' => 'mpo', 'Mapoly0023s0001' => 'mpo', 'Mapoly0142s0012' => 'mpo', 'MBI01_g32854_MAGBIO' => 'mbi', 'MBI11_g24427_MAGBIO' => 'mbi', 'MBI11_g47319_MAGBIO' => 'mbi', 'MCO01G433' => 'mco', 'MD00G1187800' => 'mdo', 'MD04G1226500' => 'mdo', 'MD05G1203900' => 'mdo', 'MD10G1191100' => 'mdo', 'MD12G1243500' => 'mdo', 'MD13G1207000' => 'mdo', 'MD13G1207100' => 'mdo', 'MD16G1208600' => 'mdo', 'Medtr1g050352' => 'mtr', 'Medtr1g070385' => 'mtr', 'Medtr1g070450' => 'mtr', 'Medtr1g075200' => 'mtr', 'Medtr1g075250' => 'mtr', 'Medtr1g075260' => 'mtr', 'Medtr1g475250' => 'mtr', 'Medtr4g075450' => 'mtr', 'Medtr7g096300' => 'mtr', 'Medtr8g105110' => 'mtr', 'MELO3C006470.2' => 'cme', 'MELO3C006471.2' => 'cme', 'MELO3C020772.2' => 'cme', 'MELO3C026780.2' => 'cme', 'MELO3C026781.2' => 'cme', 'Migut.D00390' => 'egut', 'Migut.G00435' => 'egut', 'Migut.G00436' => 'egut', 'Migut.G00718' => 'egut', 'MSTRG.21891' => 'ama', 'MSTRG.26910' => 'ama', 'MSTRG.4099' => 'ama', 'MSTRG.9925' => 'ama', 'Nitab4.5_0000165g0010' => 'nta', 'Nitab4.5_0000209g0180' => 'nta', 'Nitab4.5_0000244g0440' => 'nta', 'Nitab4.5_0000525g0220' => 'nta', 'Nitab4.5_0001597g0020' => 'nta', 'Nitab4.5_0001878g0040' => 'nta', 'Nitab4.5_0001878g0060' => 'nta', 'Nitab4.5_0002838g0100' => 'nta', 'Nitab4.5_0002838g0120' => 'nta', 'Nitab4.5_0004798g0030' => 'nta', 'Nitab4.5_0005420g0010' => 'nta', 'Nitab4.5_0005507g0010' => 'nta', 'Nitab4.5_0005574g0020' => 'nta', 'Nitab4.5_0005838g0010' => 'nta', 'Nitab4.5_0010580g0020' => 'nta', 'Nn1g02599' => 'nnu', 'Nn1g02608' => 'nnu', 'Nn3g17742' => 'nnu', 'Nn3g19534' => 'nnu', 'Nn3g19535' => 'nnu', 'Oeu008790.1' => 'oeu', 'Oeu008792.1' => 'oeu', 'Oeu032590.1' => 'oeu', 'Oeu035349.1' => 'oeu', 'Oeu049791.1' => 'oeu', 'Os01g0774500' => 'osa', 'Os03g0628800' => 'osa', 'Os03g0798600' => 'osa', 'Os05g0508800' => 'osa', 'Peaxi162Scf00036g02018' => 'pax', 'Peaxi162Scf00578g00032' => 'pax', 'Peaxi162Scf00578g00317' => 'pax', 'Peaxi162Scf00785g00114' => 'pax', 'Peaxi162Scf00813g00119' => 'pax', 'Peaxi162Scf00906g00227' => 'pax', 'PGR004G0875' => 'pgr', 'PGR004G2424' => 'pgr', 'PGR031G1239' => 'pgr', 'PGR031G2474' => 'pgr', 'PGR044G0423' => 'pgr', 'PGSC0003DMG400001128' => 'stu', 'PGSC0003DMG400007336' => 'stu', 'PGSC0003DMG400016318' => 'stu', 'PGSC0003DMG400016319' => 'stu', 'PGSC0003DMG400018074' => 'stu', 'Phvul.001G157700' => 'pvu', 'Phvul.002G148550' => 'pvu', 'Phvul.002G320200' => 'pvu', 'Phvul.003G089200' => 'pvu', 'Phvul.007G126000' => 'pvu', 'Phvul.007G126100' => 'pvu', 'Phvul.007G178000' => 'pvu', 'Phvul.007G178200' => 'pvu', 'Potri.002G043000' => 'ptr', 'Potri.002G043200' => 'ptr', 'Potri.003G123750' => 'ptr', 'Potri.005G055401' => 'ptr', 'Potri.005G219700' => 'ptr', 'Potri.005G220000' => 'ptr', 'Potri.008G161901' => 'ptr', 'Potri.008G162000' => 'ptr', 'Potri.008G162400' => 'ptr', 'Potri.010G076900' => 'ptr', 'Pp3c12_9180' => 'ppa', 'Pp3c13_19770' => 'ppa', 'Pp3c14_22950' => 'ppa', 'Pp3c16_12160' => 'ppa', 'Pp3c27_7820' => 'ppa', 'Pp3c2_3490' => 'ppa', 'Pp3c3_23700' => 'ppa', 'Pp3c3_36520' => 'ppa', 'Pp3c4_15250' => 'ppa', 'PRCOL_00007002' => 'pco', 'Prupe.1G030600' => 'ppe', 'Prupe.1G030700' => 'ppe', 'Prupe.6G345200' => 'ppe', 'Prupe.8G230300' => 'ppe', 'Prupe.8G230500' => 'ppe', 'Psat3g059600' => 'psa', 'Psat5g200920' => 'psa', 'Psat6g056440' => 'psa', 'Psat6g057360' => 'psa', 'Psat6g134120' => 'psa', 'Psat6g134160' => 'psa', 'Psat7g008640' => 'psa', 'Psat7g185240' => 'psa', 'PSO017G1330' => 'pso', 'PSO063G6097' => 'pso', 'PSO170G0835' => 'pso', 'PSO170G2499' => 'pso', 'PSO210G5058' => 'pso', 'PSO210G6154' => 'pso', 'PSO585G0031' => 'pso', 'PSO832G0264' => 'pso', 'PSO832G4288' => 'pso', 'QL03p027355' => 'qlo', 'QL03p027430' => 'qlo', 'QL04p081380' => 'qlo', 'QL06p015642' => 'qlo', 'QL06p015650' => 'qlo', 'QL06p015686' => 'qlo', 'QL12p042927' => 'qlo', 'QL93p1863_0035' => 'qlo', 'RcHm_v2.0_Chr3g0450581' => 'rch', 'RcHm_v2.0_Chr4g0390371' => 'rch', 'RcHm_v2.0_Chr4g0390381' => 'rch', 'RcHm_v2.0_Chr4g0390491' => 'rch', 'RcHm_v2.0_Chr4g0390501' => 'rch', 'RcHm_v2.0_Chr6g0289231' => 'rch', 'Rhsim04G0190400' => 'rsi', 'Rhsim04G0190500' => 'rsi', 'Rhsim04G0190600' => 'rsi', 'Rhsim13G0031400' => 'rsi', 'Rhsim13G0165600' => 'rsi', 'RhsimUnG0114600' => 'rsi', 'RhsimUnG0114700' => 'rsi', 'Sabra02G0034800' => 'sbr', 'Sabra02G0035100' => 'sbr', 'Sabra05G0168600' => 'sbr', 'Sabra05G0168800' => 'sbr', 'Sabra08G0123700' => 'sbr', 'Sabra10G0031900' => 'sbr', 'Sabra13G0039000' => 'sbr', 'SalBow2G0782' => 'sbo', 'SalBow2G1403' => 'sbo', 'SalBow4G0074' => 'sbo', 'SalBow4G2635' => 'sbo', 'SalBow5G3010' => 'sbo', 'Sc05g0000870' => 'sci', 'Sc05g0000890' => 'sci', 'Sc13g0005000' => 'sci', 'Sc13g0005030' => 'sci', 'Sc19g0003790' => 'sci', 'Sc19g0003800' => 'sci', 'Sed0003467' => 'sed', 'Sed0009355' => 'sed', 'Sed0009894' => 'sed', 'Sed0011972' => 'sed', 'Sed0021483' => 'sed', 'Sed0021750' => 'sed', 'Sed0026279' => 'sed', 'SEGI_05312' => 'sgi', 'SEGI_10112' => 'sgi', 'SEGI_15835' => 'sgi', 'SEGI_30386' => 'sgi', 'SEGI_34122' => 'sgi', 'SEGI_35063' => 'sgi', 'SGA_v2.0_scaffold101G29794' => 'sas', 'SGA_v2.0_scaffold1G00573' => 'sas', 'SGA_v2.0_scaffold79G25637' => 'sas', 'SGA_v2.0_scaffold88G27283' => 'sas', 'SGA_v2.0_scaffold88G27285' => 'sas', 'SGA_v2.0_scaffold88G27331' => 'sas', 'SHI09937' => 'shi', 'SMO119G0302' => 'smo', 'SMO137G0231' => 'smo', 'SMO367G1151' => 'smo', 'Solyc02g082000.3' => 'sly', 'Solyc06g031670.3' => 'sly', 'Solyc06g053810.3' => 'sly', 'Solyc07g025457.1' => 'sly', 'Solyc08g059740.1' => 'sly', 'Solyc08g059750.3' => 'sly', 'Solyc09g083370.3' => 'sly', 'Solyc12g038950.3' => 'sly', 'Sopen02g026630' => 'spe', 'Sopen06g018930' => 'spe', 'Sopen06g018940' => 'spe', 'Sopen08g009460' => 'spe', 'Sopen09g032290' => 'spe', 'Sp1g03080' => 'spa', 'Sp1g03090' => 'spa', 'Sp1g05480' => 'spa', 'Sp2g07860' => 'spa', 'Sp2g08430' => 'spa', 'Sp2g08440' => 'spa', 'Sp2g26200' => 'spa', 'Sp4g13170' => 'spa', 'Sp6g33840' => 'spa', 'SpUn1204_0010' => 'spa', 'TAR365G0908' => 'tar', 'TAR381G1270' => 'tar', 'TAR381G1651' => 'tar', 'TAR625G1131' => 'tar', 'TAR633G0962' => 'tar', 'TAR633G1729' => 'tar', 'TAR633G1864' => 'tar', 'TAR636G0221' => 'tar', 'TAR636G0314' => 'tar', 'TAR636G3202' => 'tar', 'THA.LOC104800805' => 'tha', 'THA.LOC104801096' => 'tha', 'THA.LOC104801555' => 'tha', 'THA.LOC104808491' => 'tha', 'THA.LOC104808595' => 'tha', 'THA.LOC104815985' => 'tha', 'THA.LOC104822250' => 'tha', 'THA.LOC104826071' => 'tha', 'Thecc.01G265200' => 'tca', 'Thecc.01G265300' => 'tca', 'Thecc.01G265700' => 'tca', 'Thecc.03G109100' => 'tca', 'Thecc.04G245900' => 'tca', 'Thecc.04G246000' => 'tca', 'Thhalv10003334m.g' => 'esa', 'Thhalv10005508m.g' => 'esa', 'Thhalv10005643m.g' => 'esa', 'Thhalv10007316m.g' => 'esa', 'Thhalv10009006m.g' => 'esa', 'Thhalv10009309m.g' => 'esa', 'Thhalv10014917m.g' => 'esa', 'Thhalv10014919m.g' => 'esa', 'Thhalv10015393m.g' => 'esa', 'Thhalv10016515m.g' => 'esa', 'Thhalv10029242m.g' => 'esa', 'TPR.G16654' => 'tpr', 'TPR.G20589' => 'tpr', 'TPR.G23029' => 'tpr', 'TPR.G27731' => 'tpr', 'TPR.G28889' => 'tpr', 'TPR.G28899' => 'tpr', 'TPR.G30846' => 'tpr', 'TPR.G5452' => 'tpr', 'TPR.G5713' => 'tpr', 'TPR.G9046' => 'tpr', 'TPR.G9061' => 'tpr', 'TWI09G1075' => 'twi', 'TWI12G0806' => 'twi', 'TWI18G0108' => 'twi', 'TWI53G1361' => 'twi', 'TWI73G0185' => 'twi', 'TWI73G0427' => 'twi', 'unitig_37.g12001' => 'ugi', 'unitig_747.g21660' => 'ugi', 'unitig_748.g7232' => 'ugi', 'unitig_748.g7315' => 'ugi', 'unitig_85.g27262' => 'ugi', 'unitig_92.g28220' => 'ugi', 'vmacro02632' => 'vma', 'vmacro08410' => 'vma', 'vmacro08411' => 'vma', 'vmacro15407' => 'vma', 'VMungo0251G3619' => 'vmu', 'VMungo0720G1204' => 'vmu', 'VMungo0720G1918' => 'vmu', 'VMungo0720G2387' => 'vmu', 'VMungo0720G2961' => 'vmu', 'VMungo1215G2154' => 'vmu', 'VMungo1383G2411' => 'vmu', 'Zm00001eb051130' => 'zma', 'Zm00001eb116830' => 'zma', 'Zm00001eb116850' => 'zma', 'Zm00001eb151740' => 'zma', 'Zm00001eb292360' => 'zma', 'Zm00001eb301640' => 'zma' ), 'gf_id' => 'HOM05D000856', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000856' ), 'data_identifier' => 'HOM05D000856', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000856', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p00010' => 'bna', 'A03p04160' => 'bna', 'A03p17160' => 'bna', 'A04p23370' => 'bna', 'A05p14860' => 'bna', 'A08p37020' => 'bna', 'A09p08050' => 'bna', 'A09p66800' => 'bna', 'A09p67940' => 'bna', 'A10p02680' => 'bna', 'A10p05320' => 'bna', 'Aa31LG1G20560' => 'aar', 'Aa31LG1G20610' => 'aar', 'Aa31LG1G7810' => 'aar', 'Aa31LG5G3590' => 'aar', 'Aa31LG5G6140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3819' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4683' => 'aag', 'Actinidia04480' => 'ach', 'Actinidia05466' => 'ach', 'Actinidia08445' => 'ach', 'Actinidia21170' => 'ach', 'Actinidia24812' => 'ach', 'Actinidia24951' => 'ach', 'Actinidia40088' => 'ach', 'Ah.02g111660' => 'amhyb', 'Ah.11g048900' => 'amhyb', 'Ah.11g049910' => 'amhyb', 'AL1G13870' => 'aly', 'AL1G13880' => 'aly', 'AL1G16760' => 'aly', 'AL390U10020' => 'aly', 'AL4G25520' => 'aly', 'AL6G19890' => 'aly', 'AL6G19900' => 'aly', 'AL6G19910' => 'aly', 'AL8G40100' => 'aly', 'Aqoxy2G03562' => 'aox', 'Aqoxy5G00316' => 'aox', 'Aqoxy5G00926' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1628KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1H403S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2FU6SJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.882I6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8YRY2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YN1SN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AF70II' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZA8L1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F916KL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHRD8H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KTZ8QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S22EMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8M29T' => 'arhy', 'AT1G04270' => 'ath', 'AT1G04280' => 'ath', 'AT1G06750' => 'ath', 'AT1G33850' => 'ath', 'AT2G30630' => 'ath', 'AT5G09490' => 'ath', 'AT5G09500' => 'ath', 'AT5G09510' => 'ath', 'AT5G43640' => 'ath', 'AT5G63070' => 'ath', 'ATR0605G315' => 'atr', 'Atru.chr11.175' => 'acertr', 'Atru.chr11.653' => 'acertr', 'Atru.chr3.1616' => 'acertr', 'Atru.chr4.2230' => 'acertr', 'Atru.chr4.2232' => 'acertr', 'Atru.chr5.1598' => 'acertr', 'Atru.chr5.1600' => 'acertr', 'Atru.chr5.2188' => 'acertr', 'AUR62008326' => 'cqu', 'AUR62011922' => 'cqu', 'AUR62011924' => 'cqu', 'AUR62021771' => 'cqu', 'AUR62032237' => 'cqu', 'AUR62032240' => 'cqu', 'BcaB01g05572' => 'bca', 'BcaB02g10337' => 'bca', 'BcaB04g19944' => 'bca', 'BcaB05g21548' => 'bca', 'BcaB05g21549' => 'bca', 'BcaB05g23227' => 'bca', 'BcaB06g26256' => 'bca', 'BcaB06g26257' => 'bca', 'BcaB06g28379' => 'bca', 'BcaC02g11159' => 'bca', 'BcaC03g13258' => 'bca', 'BcaC03g13259' => 'bca', 'BcaC05g24456' => 'bca', 'BcaC05g24457' => 'bca', 'BcaC07g36922' => 'bca', 'BcaC07g36923' => 'bca', 'BcaC07g42050' => 'bca', 'BcaC07g42176' => 'bca', 'BcaC07g42195' => 'bca', 'BcaC07g42196' => 'bca', 'BcaNung06674' => 'bca', 'BolC2t06351H' => 'bol', 'BolC2t06352H' => 'bol', 'BolC3t12993H' => 'bol', 'BolC4t23525H' => 'bol', 'BolC4t27475H' => 'bol', 'BolC5t29025H' => 'bol', 'BolC5t29026H' => 'bol', 'BolC8t46898H' => 'bol', 'BolC8t46899H' => 'bol', 'BolC8t52630H' => 'bol', 'BolC8t52765H' => 'bol', 'BolC9t53824H' => 'bol', 'BraA03t09760Z' => 'bra', 'BraA03t10990Z' => 'bra', 'BraA05t20413Z' => 'bra', 'BraA08t35602Z' => 'bra', 'BraA09t36458Z' => 'bra', 'BraA09t42018Z' => 'bra', 'BraA09t42129Z' => 'bra', 'BraA10t42536Z' => 'bra', 'BraA10t42537Z' => 'bra', 'C01p10690' => 'bna', 'C02p03890' => 'bna', 'C02p03900' => 'bna', 'C03p04620' => 'bna', 'C04p19870' => 'bna', 'C04p59670' => 'bna', 'C05p02460' => 'bna', 'C05p02470' => 'bna', 'C08p00980' => 'bna', 'C08p00990' => 'bna', 'C08p51030' => 'bna', 'C08p52360' => 'bna', 'C09p09120' => 'bna', 'CAN.G19.15' => 'can', 'CAN.G251.10' => 'can', 'CAN.G251.9' => 'can', 'CAN.G398.24' => 'can', 'CAN.G410.32' => 'can', 'CAN.G881.2' => 'can', 'CANSAT01G3025' => 'cansat', 'CANSAT78G1211' => 'cansat', 'CANSAT78G1218' => 'cansat', 'CANSAT78G1521' => 'cansat', 'CANSAT78G1670' => 'cansat', 'CARHR003600' => 'chi', 'CARHR003610' => 'chi', 'CARHR006290' => 'chi', 'CARHR006430' => 'chi', 'CARHR124110' => 'chi', 'CARHR203870' => 'chi', 'CARHR203880' => 'chi', 'CARHR203890' => 'chi', 'CARHR276880' => 'chi', 'Carub.0001s0346' => 'cru', 'Carub.0001s0347' => 'cru', 'Carub.0001s0607' => 'cru', 'Carub.0003s2768' => 'cru', 'Carub.0003s2769' => 'cru', 'Carub.0004s1178' => 'cru', 'Carub.0006s0806' => 'cru', 'Carub.0006s0807' => 'cru', 'Carub.0006s0808' => 'cru', 'Carub.0008s0501' => 'cru', 'Carub.0008s2379' => 'cru', 'Ca_08655_v3' => 'car', 'Ca_08922_v3' => 'car', 'Ca_08923_v3' => 'car', 'Ca_09119_v3' => 'car', 'Ca_09703_v3' => 'car', 'Ca_09705_v3' => 'car', 'Ca_09835_v3' => 'car', 'Ca_26403_v3' => 'car', 'Ca_30719_v3' => 'car', 'CBR_g17958' => 'cbr', 'CBR_g40516' => 'cbr', 'Cc00_g05350' => 'ccan', 'Cc01_g18690' => 'ccan', 'Cc03_g04830' => 'ccan', 'Cc03_g04850' => 'ccan', 'CDE02G4469' => 'cde', 'CDE06G0883' => 'cde', 'CDE06G1295' => 'cde', 'CDE06G1390' => 'cde', 'CDE07G0584' => 'cde', 'CDE07G1084' => 'cde', 'CDE08G1259' => 'cde', 'Cfa002341' => 'cfa', 'Cfa024337' => 'cfa', 'Ciclev10004749m.g' => 'ccl', 'Ciclev10006127m.g' => 'ccl', 'Ciclev10019720m.g' => 'ccl', 'Ciclev10022652m.g' => 'ccl', 'CiPaw.01G190400' => 'cil', 'CiPaw.01G190500' => 'cil', 'CiPaw.02G116400' => 'cil', 'CiPaw.02G116500' => 'cil', 'CiPaw.04G183000' => 'cil', 'CiPaw.04G183300' => 'cil', 'ClCG05G004610' => 'cla', 'ClCG05G004620' => 'cla', 'ClCG06G006730' => 'cla', 'ClCG06G006740' => 'cla', 'ClCG11G003690' => 'cla', 'COL.COLO4_08276' => 'col', 'COL.COLO4_08277' => 'col', 'COL.COLO4_15787' => 'col', 'COL.COLO4_15789' => 'col', 'Cpa.g.c44815' => 'cpa', 'Cpa.g.sc52.144' => 'cpa', 'Cpa.g.sc58.46' => 'cpa', 'Cpa.g.sc58.47' => 'cpa', 'Cre08.g360900' => 'cre', 'CsaV3_2G013030' => 'csa', 'CsaV3_2G013050' => 'csa', 'CsaV3_2G015620' => 'csa', 'CsaV3_3G012590' => 'csa', 'CsaV3_3G012600' => 'csa', 'CSS0001641' => 'camsi', 'CSS0008310' => 'camsi', 'CSS0013011' => 'camsi', 'CSS0017147' => 'camsi', 'CSS0022970' => 'camsi', 'CSS0025655' => 'camsi', 'CSS0028665' => 'camsi', 'CSS0029117' => 'camsi', 'CSS0032024' => 'camsi', 'CSS0039681' => 'camsi', 'CSS0046516' => 'camsi', 'CSS0050307' => 'camsi', 'DCAR_005871' => 'dca', 'DCAR_007342' => 'dca', 'DCAR_024228' => 'dca', 'DCAR_027277' => 'dca', 'DCAR_030718' => 'dca', 'Dinv20287' => 'din', 'Dinv22461' => 'din', 'Dinv22464' => 'din', 'Dinv29912' => 'din', 'Dinv29913' => 'din', 'Dinv34580' => 'din', 'Dinv34582' => 'din', 'Dinv44632' => 'din', 'Duzib052G0266' => 'dzi', 'Duzib133G0907' => 'dzi', 'Duzib133G1034' => 'dzi', 'Duzib138G0207' => 'dzi', 'Duzib138G0491' => 'dzi', 'Duzib151G0812' => 'dzi', 'Duzib151G1166' => 'dzi', 'Duzib168G0192' => 'dzi', 'Duzib211G0077' => 'dzi', 'Duzib212G0429' => 'dzi', 'Duzib212G0472' => 'dzi', 'ECA233G2617' => 'eca', 'ECA236G4188' => 'eca', 'ECA240G0936' => 'eca', 'ECA240G1129' => 'eca', 'ECA247G0623' => 'eca', 'EL10Ac5g10451' => 'bvu', 'EL10Ac5g10453' => 'bvu', 'EL10Ac5g10894' => 'bvu', 'Eucgr.H00192' => 'egr', 'Eucgr.H00193' => 'egr', 'Eucgr.H00194' => 'egr', 'Eucgr.J01562' => 'egr', 'Eucgr.K03301' => 'egr', 'FAN02G0632' => 'fan', 'FAN05G5378' => 'fan', 'FAN09G3247' => 'fan', 'FAN12G0435' => 'fan', 'FAN12G2426' => 'fan', 'FAN14G1707' => 'fan', 'FAN14G4725' => 'fan', 'FAN15G2071' => 'fan', 'FAN17G3065' => 'fan', 'FAN19G1376' => 'fan', 'FAN20G0354' => 'fan', 'FAN20G2429' => 'fan', 'FAN20G2658' => 'fan', 'FAN24G2343' => 'fan', 'FAN27G2362' => 'fan', 'FAN28G1765' => 'fan', 'FvH4_1g16020' => 'fve', 'FvH4_2g04890' => 'fve', 'FvH4_2g22270' => 'fve', 'FvH4_4g02630' => 'fve', 'FvH4_4g02640' => 'fve', 'FvH4_6g02650' => 'fve', 'Glyma.02G140600' => 'gma', 'Glyma.03G159900' => 'gma', 'Glyma.05G234800' => 'gma', 'Glyma.07G269600' => 'gma', 'Glyma.08G042300' => 'gma', 'Glyma.10G033500' => 'gma', 'Glyma.10G185200' => 'gma', 'Glyma.17G004300' => 'gma', 'Glyma.19G161900' => 'gma', 'Glyma.20G205100' => 'gma', 'Glyma.20G205200' => 'gma', 'Gohir.A01G139101' => 'ghi', 'Gohir.A02G035600' => 'ghi', 'Gohir.A02G117901' => 'ghi', 'Gohir.A07G210100' => 'ghi', 'Gohir.A07G210200' => 'ghi', 'Gohir.A08G061100' => 'ghi', 'Gohir.A09G223000' => 'ghi', 'Gohir.A09G223100' => 'ghi', 'Gohir.A10G113900' => 'ghi', 'Gohir.A10G114000' => 'ghi', 'Gohir.D02G042300' => 'ghi', 'Gohir.D07G216100' => 'ghi', 'Gohir.D07G216200' => 'ghi', 'Gohir.D08G070400' => 'ghi', 'Gohir.D09G225000' => 'ghi', 'Gohir.D09G225100' => 'ghi', 'Gohir.D10G152300' => 'ghi', 'Gohir.D10G153200' => 'ghi', 'Gohir.D11G133701' => 'ghi', 'Gorai.004G074100' => 'gra', 'Gorai.005G046800' => 'gra', 'Gorai.006G246500' => 'gra', 'Gorai.006G246600' => 'gra', 'Gorai.007G142900' => 'gra', 'Gorai.011G171000' => 'gra', 'Gorai.011G171100' => 'gra', 'Gorai.013G104300' => 'gra', 'Gorai.013G104400' => 'gra', 'GSVIVG01000754001' => 'vvi', 'GSVIVG01000756001' => 'vvi', 'GSVIVG01010903001' => 'vvi', 'GSVIVG01017623001' => 'vvi', 'GSVIVG01018113001' => 'vvi', 'GSVIVG01018116001' => 'vvi', 'GSVIVG01018118001' => 'vvi', 'HanXRQChr03g0076211' => 'han', 'HanXRQChr03g0092431' => 'han', 'HanXRQChr03g0092441' => 'han', 'HanXRQChr03g0092591' => 'han', 'HanXRQChr03g0092671' => 'han', 'HanXRQChr03g0092681' => 'han', 'HanXRQChr03g0092691' => 'han', 'HanXRQChr03g0092701' => 'han', 'HanXRQChr03g0092721' => 'han', 'HanXRQChr03g0092731' => 'han', 'HanXRQChr04g0113681' => 'han', 'HanXRQChr10g0281371' => 'han', 'HanXRQChr11g0337141' => 'han', 'HanXRQChr13g0424521' => 'han', 'HanXRQChr13g0424531' => 'han', 'HanXRQChr13g0424541' => 'han', 'HanXRQChr16g0498221' => 'han', 'Haze_04377' => 'cav', 'Haze_11298' => 'cav', 'Haze_24547' => 'cav', 'Haze_24550' => 'cav', 'Haze_26587' => 'cav', 'Hma1.2p1_0650F.1_g195410' => 'hma', 'Hma1.2p1_0893F.1_g233470' => 'hma', 'HPP92_006508' => 'vpl', 'HPP92_024780' => 'vpl', 'Hund02688' => 'sun', 'Hund09380' => 'sun', 'Hund09381' => 'sun', 'Hund09832' => 'sun', 'Hund09833' => 'sun', 'Hund11351' => 'sun', 'Hund11513' => 'sun', 'Lalb_Chr06g0162591' => 'lal', 'Lalb_Chr06g0162601' => 'lal', 'Lalb_Chr06g0169321' => 'lal', 'Lalb_Chr09g0330951' => 'lal', 'Lalb_Chr16g0387631' => 'lal', 'Lalb_Chr21g0306241' => 'lal', 'Lalb_Chr25g0290051' => 'lal', 'Lalb_Chr25g0290061' => 'lal', 'Lalb_Chr25g0290071' => 'lal', 'Lj1g0003876' => 'lja', 'Lj1P1207T36' => 'lonja', 'Lj2C1156G12' => 'lonja', 'Lj3A793G39' => 'lonja', 'Lj3C580G2' => 'lonja', 'Lj3C780G2' => 'lonja', 'Lj3C780T4' => 'lonja', 'Lj3C793G9' => 'lonja', 'Lj4g0012960' => 'lja', 'Lj5g0021252' => 'lja', 'Lj5g0021484' => 'lja', 'Lj5g0024528' => 'lja', 'Lj6A399T12' => 'lonja', 'Lj6A656G65' => 'lonja', 'Lsat_1_v5_gn_3_125500' => 'lsa', 'Lsat_1_v5_gn_3_125540' => 'lsa', 'Lsat_1_v5_gn_5_72701' => 'lsa', 'Lsat_1_v5_gn_8_91560' => 'lsa', 'Lsat_1_v5_gn_9_9640' => 'lsa', 'Manes.01G200600' => 'mes', 'Manes.01G200700' => 'mes', 'Manes.03G168900' => 'mes', 'Manes.03G169000' => 'mes', 'Manes.05G085801' => 'mes', 'Manes.05G086200' => 'mes', 'Manes.15G036700' => 'mes', 'Manes.15G036900' => 'mes', 'Mapoly0004s0172' => 'mpo', 'Mapoly0023s0001' => 'mpo', 'Mapoly0142s0012' => 'mpo', 'MBI01_g32854_MAGBIO' => 'mbi', 'MBI11_g24427_MAGBIO' => 'mbi', 'MBI11_g47319_MAGBIO' => 'mbi', 'MCO01G433' => 'mco', 'MD00G1187800' => 'mdo', 'MD04G1226500' => 'mdo', 'MD05G1203900' => 'mdo', 'MD10G1191100' => 'mdo', 'MD12G1243500' => 'mdo', 'MD13G1207000' => 'mdo', 'MD13G1207100' => 'mdo', 'MD16G1208600' => 'mdo', 'Medtr1g050352' => 'mtr', 'Medtr1g070385' => 'mtr', 'Medtr1g070450' => 'mtr', 'Medtr1g075200' => 'mtr', 'Medtr1g075250' => 'mtr', 'Medtr1g075260' => 'mtr', 'Medtr1g475250' => 'mtr', 'Medtr4g075450' => 'mtr', 'Medtr7g096300' => 'mtr', 'Medtr8g105110' => 'mtr', 'MELO3C006470.2' => 'cme', 'MELO3C006471.2' => 'cme', 'MELO3C020772.2' => 'cme', 'MELO3C026780.2' => 'cme', 'MELO3C026781.2' => 'cme', 'Migut.D00390' => 'egut', 'Migut.G00435' => 'egut', 'Migut.G00436' => 'egut', 'Migut.G00718' => 'egut', 'MSTRG.21891' => 'ama', 'MSTRG.26910' => 'ama', 'MSTRG.4099' => 'ama', 'MSTRG.9925' => 'ama', 'Nitab4.5_0000165g0010' => 'nta', 'Nitab4.5_0000209g0180' => 'nta', 'Nitab4.5_0000244g0440' => 'nta', 'Nitab4.5_0000525g0220' => 'nta', 'Nitab4.5_0001597g0020' => 'nta', 'Nitab4.5_0001878g0040' => 'nta', 'Nitab4.5_0001878g0060' => 'nta', 'Nitab4.5_0002838g0100' => 'nta', 'Nitab4.5_0002838g0120' => 'nta', 'Nitab4.5_0004798g0030' => 'nta', 'Nitab4.5_0005420g0010' => 'nta', 'Nitab4.5_0005507g0010' => 'nta', 'Nitab4.5_0005574g0020' => 'nta', 'Nitab4.5_0005838g0010' => 'nta', 'Nitab4.5_0010580g0020' => 'nta', 'Nn1g02599' => 'nnu', 'Nn1g02608' => 'nnu', 'Nn3g17742' => 'nnu', 'Nn3g19534' => 'nnu', 'Nn3g19535' => 'nnu', 'Oeu008790.1' => 'oeu', 'Oeu008792.1' => 'oeu', 'Oeu032590.1' => 'oeu', 'Oeu035349.1' => 'oeu', 'Oeu049791.1' => 'oeu', 'Os01g0774500' => 'osa', 'Os03g0628800' => 'osa', 'Os03g0798600' => 'osa', 'Os05g0508800' => 'osa', 'Peaxi162Scf00036g02018' => 'pax', 'Peaxi162Scf00578g00032' => 'pax', 'Peaxi162Scf00578g00317' => 'pax', 'Peaxi162Scf00785g00114' => 'pax', 'Peaxi162Scf00813g00119' => 'pax', 'Peaxi162Scf00906g00227' => 'pax', 'PGR004G0875' => 'pgr', 'PGR004G2424' => 'pgr', 'PGR031G1239' => 'pgr', 'PGR031G2474' => 'pgr', 'PGR044G0423' => 'pgr', 'PGSC0003DMG400001128' => 'stu', 'PGSC0003DMG400007336' => 'stu', 'PGSC0003DMG400016318' => 'stu', 'PGSC0003DMG400016319' => 'stu', 'PGSC0003DMG400018074' => 'stu', 'Phvul.001G157700' => 'pvu', 'Phvul.002G148550' => 'pvu', 'Phvul.002G320200' => 'pvu', 'Phvul.003G089200' => 'pvu', 'Phvul.007G126000' => 'pvu', 'Phvul.007G126100' => 'pvu', 'Phvul.007G178000' => 'pvu', 'Phvul.007G178200' => 'pvu', 'Potri.002G043000' => 'ptr', 'Potri.002G043200' => 'ptr', 'Potri.003G123750' => 'ptr', 'Potri.005G055401' => 'ptr', 'Potri.005G219700' => 'ptr', 'Potri.005G220000' => 'ptr', 'Potri.008G161901' => 'ptr', 'Potri.008G162000' => 'ptr', 'Potri.008G162400' => 'ptr', 'Potri.010G076900' => 'ptr', 'Pp3c12_9180' => 'ppa', 'Pp3c13_19770' => 'ppa', 'Pp3c14_22950' => 'ppa', 'Pp3c16_12160' => 'ppa', 'Pp3c27_7820' => 'ppa', 'Pp3c2_3490' => 'ppa', 'Pp3c3_23700' => 'ppa', 'Pp3c3_36520' => 'ppa', 'Pp3c4_15250' => 'ppa', 'PRCOL_00007002' => 'pco', 'Prupe.1G030600' => 'ppe', 'Prupe.1G030700' => 'ppe', 'Prupe.6G345200' => 'ppe', 'Prupe.8G230300' => 'ppe', 'Prupe.8G230500' => 'ppe', 'Psat3g059600' => 'psa', 'Psat5g200920' => 'psa', 'Psat6g056440' => 'psa', 'Psat6g057360' => 'psa', 'Psat6g134120' => 'psa', 'Psat6g134160' => 'psa', 'Psat7g008640' => 'psa', 'Psat7g185240' => 'psa', 'PSO017G1330' => 'pso', 'PSO063G6097' => 'pso', 'PSO170G0835' => 'pso', 'PSO170G2499' => 'pso', 'PSO210G5058' => 'pso', 'PSO210G6154' => 'pso', 'PSO585G0031' => 'pso', 'PSO832G0264' => 'pso', 'PSO832G4288' => 'pso', 'QL03p027355' => 'qlo', 'QL03p027430' => 'qlo', 'QL04p081380' => 'qlo', 'QL06p015642' => 'qlo', 'QL06p015650' => 'qlo', 'QL06p015686' => 'qlo', 'QL12p042927' => 'qlo', 'QL93p1863_0035' => 'qlo', 'RcHm_v2.0_Chr3g0450581' => 'rch', 'RcHm_v2.0_Chr4g0390371' => 'rch', 'RcHm_v2.0_Chr4g0390381' => 'rch', 'RcHm_v2.0_Chr4g0390491' => 'rch', 'RcHm_v2.0_Chr4g0390501' => 'rch', 'RcHm_v2.0_Chr6g0289231' => 'rch', 'Rhsim04G0190400' => 'rsi', 'Rhsim04G0190500' => 'rsi', 'Rhsim04G0190600' => 'rsi', 'Rhsim13G0031400' => 'rsi', 'Rhsim13G0165600' => 'rsi', 'RhsimUnG0114600' => 'rsi', 'RhsimUnG0114700' => 'rsi', 'Sabra02G0034800' => 'sbr', 'Sabra02G0035100' => 'sbr', 'Sabra05G0168600' => 'sbr', 'Sabra05G0168800' => 'sbr', 'Sabra08G0123700' => 'sbr', 'Sabra10G0031900' => 'sbr', 'Sabra13G0039000' => 'sbr', 'SalBow2G0782' => 'sbo', 'SalBow2G1403' => 'sbo', 'SalBow4G0074' => 'sbo', 'SalBow4G2635' => 'sbo', 'SalBow5G3010' => 'sbo', 'Sc05g0000870' => 'sci', 'Sc05g0000890' => 'sci', 'Sc13g0005000' => 'sci', 'Sc13g0005030' => 'sci', 'Sc19g0003790' => 'sci', 'Sc19g0003800' => 'sci', 'Sed0003467' => 'sed', 'Sed0009355' => 'sed', 'Sed0009894' => 'sed', 'Sed0011972' => 'sed', 'Sed0021483' => 'sed', 'Sed0021750' => 'sed', 'Sed0026279' => 'sed', 'SEGI_05312' => 'sgi', 'SEGI_10112' => 'sgi', 'SEGI_15835' => 'sgi', 'SEGI_30386' => 'sgi', 'SEGI_34122' => 'sgi', 'SEGI_35063' => 'sgi', 'SGA_v2.0_scaffold101G29794' => 'sas', 'SGA_v2.0_scaffold1G00573' => 'sas', 'SGA_v2.0_scaffold79G25637' => 'sas', 'SGA_v2.0_scaffold88G27283' => 'sas', 'SGA_v2.0_scaffold88G27285' => 'sas', 'SGA_v2.0_scaffold88G27331' => 'sas', 'SHI09937' => 'shi', 'SMO119G0302' => 'smo', 'SMO137G0231' => 'smo', 'SMO367G1151' => 'smo', 'Solyc02g082000.3' => 'sly', 'Solyc06g031670.3' => 'sly', 'Solyc06g053810.3' => 'sly', 'Solyc07g025457.1' => 'sly', 'Solyc08g059740.1' => 'sly', 'Solyc08g059750.3' => 'sly', 'Solyc09g083370.3' => 'sly', 'Solyc12g038950.3' => 'sly', 'Sopen02g026630' => 'spe', 'Sopen06g018930' => 'spe', 'Sopen06g018940' => 'spe', 'Sopen08g009460' => 'spe', 'Sopen09g032290' => 'spe', 'Sp1g03080' => 'spa', 'Sp1g03090' => 'spa', 'Sp1g05480' => 'spa', 'Sp2g07860' => 'spa', 'Sp2g08430' => 'spa', 'Sp2g08440' => 'spa', 'Sp2g26200' => 'spa', 'Sp4g13170' => 'spa', 'Sp6g33840' => 'spa', 'SpUn1204_0010' => 'spa', 'TAR365G0908' => 'tar', 'TAR381G1270' => 'tar', 'TAR381G1651' => 'tar', 'TAR625G1131' => 'tar', 'TAR633G0962' => 'tar', 'TAR633G1729' => 'tar', 'TAR633G1864' => 'tar', 'TAR636G0221' => 'tar', 'TAR636G0314' => 'tar', 'TAR636G3202' => 'tar', 'THA.LOC104800805' => 'tha', 'THA.LOC104801096' => 'tha', 'THA.LOC104801555' => 'tha', 'THA.LOC104808491' => 'tha', 'THA.LOC104808595' => 'tha', 'THA.LOC104815985' => 'tha', 'THA.LOC104822250' => 'tha', 'THA.LOC104826071' => 'tha', 'Thecc.01G265200' => 'tca', 'Thecc.01G265300' => 'tca', 'Thecc.01G265700' => 'tca', 'Thecc.03G109100' => 'tca', 'Thecc.04G245900' => 'tca', 'Thecc.04G246000' => 'tca', 'Thhalv10003334m.g' => 'esa', 'Thhalv10005508m.g' => 'esa', 'Thhalv10005643m.g' => 'esa', 'Thhalv10007316m.g' => 'esa', 'Thhalv10009006m.g' => 'esa', 'Thhalv10009309m.g' => 'esa', 'Thhalv10014917m.g' => 'esa', 'Thhalv10014919m.g' => 'esa', 'Thhalv10015393m.g' => 'esa', 'Thhalv10016515m.g' => 'esa', 'Thhalv10029242m.g' => 'esa', 'TPR.G16654' => 'tpr', 'TPR.G20589' => 'tpr', 'TPR.G23029' => 'tpr', 'TPR.G27731' => 'tpr', 'TPR.G28889' => 'tpr', 'TPR.G28899' => 'tpr', 'TPR.G30846' => 'tpr', 'TPR.G5452' => 'tpr', 'TPR.G5713' => 'tpr', 'TPR.G9046' => 'tpr', 'TPR.G9061' => 'tpr', 'TWI09G1075' => 'twi', 'TWI12G0806' => 'twi', 'TWI18G0108' => 'twi', 'TWI53G1361' => 'twi', 'TWI73G0185' => 'twi', 'TWI73G0427' => 'twi', 'unitig_37.g12001' => 'ugi', 'unitig_747.g21660' => 'ugi', 'unitig_748.g7232' => 'ugi', 'unitig_748.g7315' => 'ugi', 'unitig_85.g27262' => 'ugi', 'unitig_92.g28220' => 'ugi', 'vmacro02632' => 'vma', 'vmacro08410' => 'vma', 'vmacro08411' => 'vma', 'vmacro15407' => 'vma', 'VMungo0251G3619' => 'vmu', 'VMungo0720G1204' => 'vmu', 'VMungo0720G1918' => 'vmu', 'VMungo0720G2387' => 'vmu', 'VMungo0720G2961' => 'vmu', 'VMungo1215G2154' => 'vmu', 'VMungo1383G2411' => 'vmu', 'Zm00001eb051130' => 'zma', 'Zm00001eb116830' => 'zma', 'Zm00001eb116850' => 'zma', 'Zm00001eb151740' => 'zma', 'Zm00001eb292360' => 'zma', 'Zm00001eb301640' => 'zma' ) $gf_id = 'HOM05D000856' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000856' ) $data_identifier = 'HOM05D000856' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 13, 'ath' => (int) 10, 'atr' => (int) 1, 'acertr' => (int) 8, 'cqu' => (int) 6, 'bca' => (int) 21, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 11, 'car' => (int) 9, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 8, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 5, 'fan' => (int) 16, 'fve' => (int) 6, 'gma' => (int) 11, 'ghi' => (int) 19, 'gra' => (int) 9, 'vvi' => (int) 7, 'han' => (int) 17, 'cav' => (int) 5, 'hma' => (int) 2, 'vpl' => (int) 2, 'sun' => (int) 7, 'lal' => (int) 9, 'lja' => (int) 5, 'lonja' => (int) 9, 'lsa' => (int) 5, 'mes' => (int) 8, 'mpo' => (int) 3, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 10, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 15, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 9, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 9, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 6, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 5, 'spa' => (int) 10, 'tar' => (int) 10, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 11, 'tpr' => (int) 11, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 4, 'vmu' => (int) 7, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb301640' $species_info = array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ) $local_species = 'cme' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000856', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p00010' => 'bna', 'A03p04160' => 'bna', 'A03p17160' => 'bna', 'A04p23370' => 'bna', 'A05p14860' => 'bna', 'A08p37020' => 'bna', 'A09p08050' => 'bna', 'A09p66800' => 'bna', 'A09p67940' => 'bna', 'A10p02680' => 'bna', 'A10p05320' => 'bna', 'Aa31LG1G20560' => 'aar', 'Aa31LG1G20610' => 'aar', 'Aa31LG1G7810' => 'aar', 'Aa31LG5G3590' => 'aar', 'Aa31LG5G6140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3819' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4683' => 'aag', 'Actinidia04480' => 'ach', 'Actinidia05466' => 'ach', 'Actinidia08445' => 'ach', 'Actinidia21170' => 'ach', 'Actinidia24812' => 'ach', 'Actinidia24951' => 'ach', 'Actinidia40088' => 'ach', 'Ah.02g111660' => 'amhyb', 'Ah.11g048900' => 'amhyb', 'Ah.11g049910' => 'amhyb', 'AL1G13870' => 'aly', 'AL1G13880' => 'aly', 'AL1G16760' => 'aly', 'AL390U10020' => 'aly', 'AL4G25520' => 'aly', 'AL6G19890' => 'aly', 'AL6G19900' => 'aly', 'AL6G19910' => 'aly', 'AL8G40100' => 'aly', 'Aqoxy2G03562' => 'aox', 'Aqoxy5G00316' => 'aox', 'Aqoxy5G00926' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1628KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1H403S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2FU6SJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.882I6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8YRY2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YN1SN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AF70II' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZA8L1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F916KL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHRD8H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KTZ8QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S22EMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8M29T' => 'arhy', 'AT1G04270' => 'ath', 'AT1G04280' => 'ath', 'AT1G06750' => 'ath', 'AT1G33850' => 'ath', 'AT2G30630' => 'ath', 'AT5G09490' => 'ath', 'AT5G09500' => 'ath', 'AT5G09510' => 'ath', 'AT5G43640' => 'ath', 'AT5G63070' => 'ath', 'ATR0605G315' => 'atr', 'Atru.chr11.175' => 'acertr', 'Atru.chr11.653' => 'acertr', 'Atru.chr3.1616' => 'acertr', 'Atru.chr4.2230' => 'acertr', 'Atru.chr4.2232' => 'acertr', 'Atru.chr5.1598' => 'acertr', 'Atru.chr5.1600' => 'acertr', 'Atru.chr5.2188' => 'acertr', 'AUR62008326' => 'cqu', 'AUR62011922' => 'cqu', 'AUR62011924' => 'cqu', 'AUR62021771' => 'cqu', 'AUR62032237' => 'cqu', 'AUR62032240' => 'cqu', 'BcaB01g05572' => 'bca', 'BcaB02g10337' => 'bca', 'BcaB04g19944' => 'bca', 'BcaB05g21548' => 'bca', 'BcaB05g21549' => 'bca', 'BcaB05g23227' => 'bca', 'BcaB06g26256' => 'bca', 'BcaB06g26257' => 'bca', 'BcaB06g28379' => 'bca', 'BcaC02g11159' => 'bca', 'BcaC03g13258' => 'bca', 'BcaC03g13259' => 'bca', 'BcaC05g24456' => 'bca', 'BcaC05g24457' => 'bca', 'BcaC07g36922' => 'bca', 'BcaC07g36923' => 'bca', 'BcaC07g42050' => 'bca', 'BcaC07g42176' => 'bca', 'BcaC07g42195' => 'bca', 'BcaC07g42196' => 'bca', 'BcaNung06674' => 'bca', 'BolC2t06351H' => 'bol', 'BolC2t06352H' => 'bol', 'BolC3t12993H' => 'bol', 'BolC4t23525H' => 'bol', 'BolC4t27475H' => 'bol', 'BolC5t29025H' => 'bol', 'BolC5t29026H' => 'bol', 'BolC8t46898H' => 'bol', 'BolC8t46899H' => 'bol', 'BolC8t52630H' => 'bol', 'BolC8t52765H' => 'bol', 'BolC9t53824H' => 'bol', 'BraA03t09760Z' => 'bra', 'BraA03t10990Z' => 'bra', 'BraA05t20413Z' => 'bra', 'BraA08t35602Z' => 'bra', 'BraA09t36458Z' => 'bra', 'BraA09t42018Z' => 'bra', 'BraA09t42129Z' => 'bra', 'BraA10t42536Z' => 'bra', 'BraA10t42537Z' => 'bra', 'C01p10690' => 'bna', 'C02p03890' => 'bna', 'C02p03900' => 'bna', 'C03p04620' => 'bna', 'C04p19870' => 'bna', 'C04p59670' => 'bna', 'C05p02460' => 'bna', 'C05p02470' => 'bna', 'C08p00980' => 'bna', 'C08p00990' => 'bna', 'C08p51030' => 'bna', 'C08p52360' => 'bna', 'C09p09120' => 'bna', 'CAN.G19.15' => 'can', 'CAN.G251.10' => 'can', 'CAN.G251.9' => 'can', 'CAN.G398.24' => 'can', 'CAN.G410.32' => 'can', 'CAN.G881.2' => 'can', 'CANSAT01G3025' => 'cansat', 'CANSAT78G1211' => 'cansat', 'CANSAT78G1218' => 'cansat', 'CANSAT78G1521' => 'cansat', 'CANSAT78G1670' => 'cansat', 'CARHR003600' => 'chi', 'CARHR003610' => 'chi', 'CARHR006290' => 'chi', 'CARHR006430' => 'chi', 'CARHR124110' => 'chi', 'CARHR203870' => 'chi', 'CARHR203880' => 'chi', 'CARHR203890' => 'chi', 'CARHR276880' => 'chi', 'Carub.0001s0346' => 'cru', 'Carub.0001s0347' => 'cru', 'Carub.0001s0607' => 'cru', 'Carub.0003s2768' => 'cru', 'Carub.0003s2769' => 'cru', 'Carub.0004s1178' => 'cru', 'Carub.0006s0806' => 'cru', 'Carub.0006s0807' => 'cru', 'Carub.0006s0808' => 'cru', 'Carub.0008s0501' => 'cru', 'Carub.0008s2379' => 'cru', 'Ca_08655_v3' => 'car', 'Ca_08922_v3' => 'car', 'Ca_08923_v3' => 'car', 'Ca_09119_v3' => 'car', 'Ca_09703_v3' => 'car', 'Ca_09705_v3' => 'car', 'Ca_09835_v3' => 'car', 'Ca_26403_v3' => 'car', 'Ca_30719_v3' => 'car', 'CBR_g17958' => 'cbr', 'CBR_g40516' => 'cbr', 'Cc00_g05350' => 'ccan', 'Cc01_g18690' => 'ccan', 'Cc03_g04830' => 'ccan', 'Cc03_g04850' => 'ccan', 'CDE02G4469' => 'cde', 'CDE06G0883' => 'cde', 'CDE06G1295' => 'cde', 'CDE06G1390' => 'cde', 'CDE07G0584' => 'cde', 'CDE07G1084' => 'cde', 'CDE08G1259' => 'cde', 'Cfa002341' => 'cfa', 'Cfa024337' => 'cfa', 'Ciclev10004749m.g' => 'ccl', 'Ciclev10006127m.g' => 'ccl', 'Ciclev10019720m.g' => 'ccl', 'Ciclev10022652m.g' => 'ccl', 'CiPaw.01G190400' => 'cil', 'CiPaw.01G190500' => 'cil', 'CiPaw.02G116400' => 'cil', 'CiPaw.02G116500' => 'cil', 'CiPaw.04G183000' => 'cil', 'CiPaw.04G183300' => 'cil', 'ClCG05G004610' => 'cla', 'ClCG05G004620' => 'cla', 'ClCG06G006730' => 'cla', 'ClCG06G006740' => 'cla', 'ClCG11G003690' => 'cla', 'COL.COLO4_08276' => 'col', 'COL.COLO4_08277' => 'col', 'COL.COLO4_15787' => 'col', 'COL.COLO4_15789' => 'col', 'Cpa.g.c44815' => 'cpa', 'Cpa.g.sc52.144' => 'cpa', 'Cpa.g.sc58.46' => 'cpa', 'Cpa.g.sc58.47' => 'cpa', 'Cre08.g360900' => 'cre', 'CsaV3_2G013030' => 'csa', 'CsaV3_2G013050' => 'csa', 'CsaV3_2G015620' => 'csa', 'CsaV3_3G012590' => 'csa', 'CsaV3_3G012600' => 'csa', 'CSS0001641' => 'camsi', 'CSS0008310' => 'camsi', 'CSS0013011' => 'camsi', 'CSS0017147' => 'camsi', 'CSS0022970' => 'camsi', 'CSS0025655' => 'camsi', 'CSS0028665' => 'camsi', 'CSS0029117' => 'camsi', 'CSS0032024' => 'camsi', 'CSS0039681' => 'camsi', 'CSS0046516' => 'camsi', 'CSS0050307' => 'camsi', 'DCAR_005871' => 'dca', 'DCAR_007342' => 'dca', 'DCAR_024228' => 'dca', 'DCAR_027277' => 'dca', 'DCAR_030718' => 'dca', 'Dinv20287' => 'din', 'Dinv22461' => 'din', 'Dinv22464' => 'din', 'Dinv29912' => 'din', 'Dinv29913' => 'din', 'Dinv34580' => 'din', 'Dinv34582' => 'din', 'Dinv44632' => 'din', 'Duzib052G0266' => 'dzi', 'Duzib133G0907' => 'dzi', 'Duzib133G1034' => 'dzi', 'Duzib138G0207' => 'dzi', 'Duzib138G0491' => 'dzi', 'Duzib151G0812' => 'dzi', 'Duzib151G1166' => 'dzi', 'Duzib168G0192' => 'dzi', 'Duzib211G0077' => 'dzi', 'Duzib212G0429' => 'dzi', 'Duzib212G0472' => 'dzi', 'ECA233G2617' => 'eca', 'ECA236G4188' => 'eca', 'ECA240G0936' => 'eca', 'ECA240G1129' => 'eca', 'ECA247G0623' => 'eca', 'EL10Ac5g10451' => 'bvu', 'EL10Ac5g10453' => 'bvu', 'EL10Ac5g10894' => 'bvu', 'Eucgr.H00192' => 'egr', 'Eucgr.H00193' => 'egr', 'Eucgr.H00194' => 'egr', 'Eucgr.J01562' => 'egr', 'Eucgr.K03301' => 'egr', 'FAN02G0632' => 'fan', 'FAN05G5378' => 'fan', 'FAN09G3247' => 'fan', 'FAN12G0435' => 'fan', 'FAN12G2426' => 'fan', 'FAN14G1707' => 'fan', 'FAN14G4725' => 'fan', 'FAN15G2071' => 'fan', 'FAN17G3065' => 'fan', 'FAN19G1376' => 'fan', 'FAN20G0354' => 'fan', 'FAN20G2429' => 'fan', 'FAN20G2658' => 'fan', 'FAN24G2343' => 'fan', 'FAN27G2362' => 'fan', 'FAN28G1765' => 'fan', 'FvH4_1g16020' => 'fve', 'FvH4_2g04890' => 'fve', 'FvH4_2g22270' => 'fve', 'FvH4_4g02630' => 'fve', 'FvH4_4g02640' => 'fve', 'FvH4_6g02650' => 'fve', 'Glyma.02G140600' => 'gma', 'Glyma.03G159900' => 'gma', 'Glyma.05G234800' => 'gma', 'Glyma.07G269600' => 'gma', 'Glyma.08G042300' => 'gma', 'Glyma.10G033500' => 'gma', 'Glyma.10G185200' => 'gma', 'Glyma.17G004300' => 'gma', 'Glyma.19G161900' => 'gma', 'Glyma.20G205100' => 'gma', 'Glyma.20G205200' => 'gma', 'Gohir.A01G139101' => 'ghi', 'Gohir.A02G035600' => 'ghi', 'Gohir.A02G117901' => 'ghi', 'Gohir.A07G210100' => 'ghi', 'Gohir.A07G210200' => 'ghi', 'Gohir.A08G061100' => 'ghi', 'Gohir.A09G223000' => 'ghi', 'Gohir.A09G223100' => 'ghi', 'Gohir.A10G113900' => 'ghi', 'Gohir.A10G114000' => 'ghi', 'Gohir.D02G042300' => 'ghi', 'Gohir.D07G216100' => 'ghi', 'Gohir.D07G216200' => 'ghi', 'Gohir.D08G070400' => 'ghi', 'Gohir.D09G225000' => 'ghi', 'Gohir.D09G225100' => 'ghi', 'Gohir.D10G152300' => 'ghi', 'Gohir.D10G153200' => 'ghi', 'Gohir.D11G133701' => 'ghi', 'Gorai.004G074100' => 'gra', 'Gorai.005G046800' => 'gra', 'Gorai.006G246500' => 'gra', 'Gorai.006G246600' => 'gra', 'Gorai.007G142900' => 'gra', 'Gorai.011G171000' => 'gra', 'Gorai.011G171100' => 'gra', 'Gorai.013G104300' => 'gra', 'Gorai.013G104400' => 'gra', 'GSVIVG01000754001' => 'vvi', 'GSVIVG01000756001' => 'vvi', 'GSVIVG01010903001' => 'vvi', 'GSVIVG01017623001' => 'vvi', 'GSVIVG01018113001' => 'vvi', 'GSVIVG01018116001' => 'vvi', 'GSVIVG01018118001' => 'vvi', 'HanXRQChr03g0076211' => 'han', 'HanXRQChr03g0092431' => 'han', 'HanXRQChr03g0092441' => 'han', 'HanXRQChr03g0092591' => 'han', 'HanXRQChr03g0092671' => 'han', 'HanXRQChr03g0092681' => 'han', 'HanXRQChr03g0092691' => 'han', 'HanXRQChr03g0092701' => 'han', 'HanXRQChr03g0092721' => 'han', 'HanXRQChr03g0092731' => 'han', 'HanXRQChr04g0113681' => 'han', 'HanXRQChr10g0281371' => 'han', 'HanXRQChr11g0337141' => 'han', 'HanXRQChr13g0424521' => 'han', 'HanXRQChr13g0424531' => 'han', 'HanXRQChr13g0424541' => 'han', 'HanXRQChr16g0498221' => 'han', 'Haze_04377' => 'cav', 'Haze_11298' => 'cav', 'Haze_24547' => 'cav', 'Haze_24550' => 'cav', 'Haze_26587' => 'cav', 'Hma1.2p1_0650F.1_g195410' => 'hma', 'Hma1.2p1_0893F.1_g233470' => 'hma', 'HPP92_006508' => 'vpl', 'HPP92_024780' => 'vpl', 'Hund02688' => 'sun', 'Hund09380' => 'sun', 'Hund09381' => 'sun', 'Hund09832' => 'sun', 'Hund09833' => 'sun', 'Hund11351' => 'sun', 'Hund11513' => 'sun', 'Lalb_Chr06g0162591' => 'lal', 'Lalb_Chr06g0162601' => 'lal', 'Lalb_Chr06g0169321' => 'lal', 'Lalb_Chr09g0330951' => 'lal', 'Lalb_Chr16g0387631' => 'lal', 'Lalb_Chr21g0306241' => 'lal', 'Lalb_Chr25g0290051' => 'lal', 'Lalb_Chr25g0290061' => 'lal', 'Lalb_Chr25g0290071' => 'lal', 'Lj1g0003876' => 'lja', 'Lj1P1207T36' => 'lonja', 'Lj2C1156G12' => 'lonja', 'Lj3A793G39' => 'lonja', 'Lj3C580G2' => 'lonja', 'Lj3C780G2' => 'lonja', 'Lj3C780T4' => 'lonja', 'Lj3C793G9' => 'lonja', 'Lj4g0012960' => 'lja', 'Lj5g0021252' => 'lja', 'Lj5g0021484' => 'lja', 'Lj5g0024528' => 'lja', 'Lj6A399T12' => 'lonja', 'Lj6A656G65' => 'lonja', 'Lsat_1_v5_gn_3_125500' => 'lsa', 'Lsat_1_v5_gn_3_125540' => 'lsa', 'Lsat_1_v5_gn_5_72701' => 'lsa', 'Lsat_1_v5_gn_8_91560' => 'lsa', 'Lsat_1_v5_gn_9_9640' => 'lsa', 'Manes.01G200600' => 'mes', 'Manes.01G200700' => 'mes', 'Manes.03G168900' => 'mes', 'Manes.03G169000' => 'mes', 'Manes.05G085801' => 'mes', 'Manes.05G086200' => 'mes', 'Manes.15G036700' => 'mes', 'Manes.15G036900' => 'mes', 'Mapoly0004s0172' => 'mpo', 'Mapoly0023s0001' => 'mpo', 'Mapoly0142s0012' => 'mpo', 'MBI01_g32854_MAGBIO' => 'mbi', 'MBI11_g24427_MAGBIO' => 'mbi', 'MBI11_g47319_MAGBIO' => 'mbi', 'MCO01G433' => 'mco', 'MD00G1187800' => 'mdo', 'MD04G1226500' => 'mdo', 'MD05G1203900' => 'mdo', 'MD10G1191100' => 'mdo', 'MD12G1243500' => 'mdo', 'MD13G1207000' => 'mdo', 'MD13G1207100' => 'mdo', 'MD16G1208600' => 'mdo', 'Medtr1g050352' => 'mtr', 'Medtr1g070385' => 'mtr', 'Medtr1g070450' => 'mtr', 'Medtr1g075200' => 'mtr', 'Medtr1g075250' => 'mtr', 'Medtr1g075260' => 'mtr', 'Medtr1g475250' => 'mtr', 'Medtr4g075450' => 'mtr', 'Medtr7g096300' => 'mtr', 'Medtr8g105110' => 'mtr', 'MELO3C006470.2' => 'cme', 'MELO3C006471.2' => 'cme', 'MELO3C020772.2' => 'cme', 'MELO3C026780.2' => 'cme', 'MELO3C026781.2' => 'cme', 'Migut.D00390' => 'egut', 'Migut.G00435' => 'egut', 'Migut.G00436' => 'egut', 'Migut.G00718' => 'egut', 'MSTRG.21891' => 'ama', 'MSTRG.26910' => 'ama', 'MSTRG.4099' => 'ama', 'MSTRG.9925' => 'ama', 'Nitab4.5_0000165g0010' => 'nta', 'Nitab4.5_0000209g0180' => 'nta', 'Nitab4.5_0000244g0440' => 'nta', 'Nitab4.5_0000525g0220' => 'nta', 'Nitab4.5_0001597g0020' => 'nta', 'Nitab4.5_0001878g0040' => 'nta', 'Nitab4.5_0001878g0060' => 'nta', 'Nitab4.5_0002838g0100' => 'nta', 'Nitab4.5_0002838g0120' => 'nta', 'Nitab4.5_0004798g0030' => 'nta', 'Nitab4.5_0005420g0010' => 'nta', 'Nitab4.5_0005507g0010' => 'nta', 'Nitab4.5_0005574g0020' => 'nta', 'Nitab4.5_0005838g0010' => 'nta', 'Nitab4.5_0010580g0020' => 'nta', 'Nn1g02599' => 'nnu', 'Nn1g02608' => 'nnu', 'Nn3g17742' => 'nnu', 'Nn3g19534' => 'nnu', 'Nn3g19535' => 'nnu', 'Oeu008790.1' => 'oeu', 'Oeu008792.1' => 'oeu', 'Oeu032590.1' => 'oeu', 'Oeu035349.1' => 'oeu', 'Oeu049791.1' => 'oeu', 'Os01g0774500' => 'osa', 'Os03g0628800' => 'osa', 'Os03g0798600' => 'osa', 'Os05g0508800' => 'osa', 'Peaxi162Scf00036g02018' => 'pax', 'Peaxi162Scf00578g00032' => 'pax', 'Peaxi162Scf00578g00317' => 'pax', 'Peaxi162Scf00785g00114' => 'pax', 'Peaxi162Scf00813g00119' => 'pax', 'Peaxi162Scf00906g00227' => 'pax', 'PGR004G0875' => 'pgr', 'PGR004G2424' => 'pgr', 'PGR031G1239' => 'pgr', 'PGR031G2474' => 'pgr', 'PGR044G0423' => 'pgr', 'PGSC0003DMG400001128' => 'stu', 'PGSC0003DMG400007336' => 'stu', 'PGSC0003DMG400016318' => 'stu', 'PGSC0003DMG400016319' => 'stu', 'PGSC0003DMG400018074' => 'stu', 'Phvul.001G157700' => 'pvu', 'Phvul.002G148550' => 'pvu', 'Phvul.002G320200' => 'pvu', 'Phvul.003G089200' => 'pvu', 'Phvul.007G126000' => 'pvu', 'Phvul.007G126100' => 'pvu', 'Phvul.007G178000' => 'pvu', 'Phvul.007G178200' => 'pvu', 'Potri.002G043000' => 'ptr', 'Potri.002G043200' => 'ptr', 'Potri.003G123750' => 'ptr', 'Potri.005G055401' => 'ptr', 'Potri.005G219700' => 'ptr', 'Potri.005G220000' => 'ptr', 'Potri.008G161901' => 'ptr', 'Potri.008G162000' => 'ptr', 'Potri.008G162400' => 'ptr', 'Potri.010G076900' => 'ptr', 'Pp3c12_9180' => 'ppa', 'Pp3c13_19770' => 'ppa', 'Pp3c14_22950' => 'ppa', 'Pp3c16_12160' => 'ppa', 'Pp3c27_7820' => 'ppa', 'Pp3c2_3490' => 'ppa', 'Pp3c3_23700' => 'ppa', 'Pp3c3_36520' => 'ppa', 'Pp3c4_15250' => 'ppa', 'PRCOL_00007002' => 'pco', 'Prupe.1G030600' => 'ppe', 'Prupe.1G030700' => 'ppe', 'Prupe.6G345200' => 'ppe', 'Prupe.8G230300' => 'ppe', 'Prupe.8G230500' => 'ppe', 'Psat3g059600' => 'psa', 'Psat5g200920' => 'psa', 'Psat6g056440' => 'psa', 'Psat6g057360' => 'psa', 'Psat6g134120' => 'psa', 'Psat6g134160' => 'psa', 'Psat7g008640' => 'psa', 'Psat7g185240' => 'psa', 'PSO017G1330' => 'pso', 'PSO063G6097' => 'pso', 'PSO170G0835' => 'pso', 'PSO170G2499' => 'pso', 'PSO210G5058' => 'pso', 'PSO210G6154' => 'pso', 'PSO585G0031' => 'pso', 'PSO832G0264' => 'pso', 'PSO832G4288' => 'pso', 'QL03p027355' => 'qlo', 'QL03p027430' => 'qlo', 'QL04p081380' => 'qlo', 'QL06p015642' => 'qlo', 'QL06p015650' => 'qlo', 'QL06p015686' => 'qlo', 'QL12p042927' => 'qlo', 'QL93p1863_0035' => 'qlo', 'RcHm_v2.0_Chr3g0450581' => 'rch', 'RcHm_v2.0_Chr4g0390371' => 'rch', 'RcHm_v2.0_Chr4g0390381' => 'rch', 'RcHm_v2.0_Chr4g0390491' => 'rch', 'RcHm_v2.0_Chr4g0390501' => 'rch', 'RcHm_v2.0_Chr6g0289231' => 'rch', 'Rhsim04G0190400' => 'rsi', 'Rhsim04G0190500' => 'rsi', 'Rhsim04G0190600' => 'rsi', 'Rhsim13G0031400' => 'rsi', 'Rhsim13G0165600' => 'rsi', 'RhsimUnG0114600' => 'rsi', 'RhsimUnG0114700' => 'rsi', 'Sabra02G0034800' => 'sbr', 'Sabra02G0035100' => 'sbr', 'Sabra05G0168600' => 'sbr', 'Sabra05G0168800' => 'sbr', 'Sabra08G0123700' => 'sbr', 'Sabra10G0031900' => 'sbr', 'Sabra13G0039000' => 'sbr', 'SalBow2G0782' => 'sbo', 'SalBow2G1403' => 'sbo', 'SalBow4G0074' => 'sbo', 'SalBow4G2635' => 'sbo', 'SalBow5G3010' => 'sbo', 'Sc05g0000870' => 'sci', 'Sc05g0000890' => 'sci', 'Sc13g0005000' => 'sci', 'Sc13g0005030' => 'sci', 'Sc19g0003790' => 'sci', 'Sc19g0003800' => 'sci', 'Sed0003467' => 'sed', 'Sed0009355' => 'sed', 'Sed0009894' => 'sed', 'Sed0011972' => 'sed', 'Sed0021483' => 'sed', 'Sed0021750' => 'sed', 'Sed0026279' => 'sed', 'SEGI_05312' => 'sgi', 'SEGI_10112' => 'sgi', 'SEGI_15835' => 'sgi', 'SEGI_30386' => 'sgi', 'SEGI_34122' => 'sgi', 'SEGI_35063' => 'sgi', 'SGA_v2.0_scaffold101G29794' => 'sas', 'SGA_v2.0_scaffold1G00573' => 'sas', 'SGA_v2.0_scaffold79G25637' => 'sas', 'SGA_v2.0_scaffold88G27283' => 'sas', 'SGA_v2.0_scaffold88G27285' => 'sas', 'SGA_v2.0_scaffold88G27331' => 'sas', 'SHI09937' => 'shi', 'SMO119G0302' => 'smo', 'SMO137G0231' => 'smo', 'SMO367G1151' => 'smo', 'Solyc02g082000.3' => 'sly', 'Solyc06g031670.3' => 'sly', 'Solyc06g053810.3' => 'sly', 'Solyc07g025457.1' => 'sly', 'Solyc08g059740.1' => 'sly', 'Solyc08g059750.3' => 'sly', 'Solyc09g083370.3' => 'sly', 'Solyc12g038950.3' => 'sly', 'Sopen02g026630' => 'spe', 'Sopen06g018930' => 'spe', 'Sopen06g018940' => 'spe', 'Sopen08g009460' => 'spe', 'Sopen09g032290' => 'spe', 'Sp1g03080' => 'spa', 'Sp1g03090' => 'spa', 'Sp1g05480' => 'spa', 'Sp2g07860' => 'spa', 'Sp2g08430' => 'spa', 'Sp2g08440' => 'spa', 'Sp2g26200' => 'spa', 'Sp4g13170' => 'spa', 'Sp6g33840' => 'spa', 'SpUn1204_0010' => 'spa', 'TAR365G0908' => 'tar', 'TAR381G1270' => 'tar', 'TAR381G1651' => 'tar', 'TAR625G1131' => 'tar', 'TAR633G0962' => 'tar', 'TAR633G1729' => 'tar', 'TAR633G1864' => 'tar', 'TAR636G0221' => 'tar', 'TAR636G0314' => 'tar', 'TAR636G3202' => 'tar', 'THA.LOC104800805' => 'tha', 'THA.LOC104801096' => 'tha', 'THA.LOC104801555' => 'tha', 'THA.LOC104808491' => 'tha', 'THA.LOC104808595' => 'tha', 'THA.LOC104815985' => 'tha', 'THA.LOC104822250' => 'tha', 'THA.LOC104826071' => 'tha', 'Thecc.01G265200' => 'tca', 'Thecc.01G265300' => 'tca', 'Thecc.01G265700' => 'tca', 'Thecc.03G109100' => 'tca', 'Thecc.04G245900' => 'tca', 'Thecc.04G246000' => 'tca', 'Thhalv10003334m.g' => 'esa', 'Thhalv10005508m.g' => 'esa', 'Thhalv10005643m.g' => 'esa', 'Thhalv10007316m.g' => 'esa', 'Thhalv10009006m.g' => 'esa', 'Thhalv10009309m.g' => 'esa', 'Thhalv10014917m.g' => 'esa', 'Thhalv10014919m.g' => 'esa', 'Thhalv10015393m.g' => 'esa', 'Thhalv10016515m.g' => 'esa', 'Thhalv10029242m.g' => 'esa', 'TPR.G16654' => 'tpr', 'TPR.G20589' => 'tpr', 'TPR.G23029' => 'tpr', 'TPR.G27731' => 'tpr', 'TPR.G28889' => 'tpr', 'TPR.G28899' => 'tpr', 'TPR.G30846' => 'tpr', 'TPR.G5452' => 'tpr', 'TPR.G5713' => 'tpr', 'TPR.G9046' => 'tpr', 'TPR.G9061' => 'tpr', 'TWI09G1075' => 'twi', 'TWI12G0806' => 'twi', 'TWI18G0108' => 'twi', 'TWI53G1361' => 'twi', 'TWI73G0185' => 'twi', 'TWI73G0427' => 'twi', 'unitig_37.g12001' => 'ugi', 'unitig_747.g21660' => 'ugi', 'unitig_748.g7232' => 'ugi', 'unitig_748.g7315' => 'ugi', 'unitig_85.g27262' => 'ugi', 'unitig_92.g28220' => 'ugi', 'vmacro02632' => 'vma', 'vmacro08410' => 'vma', 'vmacro08411' => 'vma', 'vmacro15407' => 'vma', 'VMungo0251G3619' => 'vmu', 'VMungo0720G1204' => 'vmu', 'VMungo0720G1918' => 'vmu', 'VMungo0720G2387' => 'vmu', 'VMungo0720G2961' => 'vmu', 'VMungo1215G2154' => 'vmu', 'VMungo1383G2411' => 'vmu', 'Zm00001eb051130' => 'zma', 'Zm00001eb116830' => 'zma', 'Zm00001eb116850' => 'zma', 'Zm00001eb151740' => 'zma', 'Zm00001eb292360' => 'zma', 'Zm00001eb301640' => 'zma' ), 'gf_id' => 'HOM05D000856', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000856' ), 'data_identifier' => 'HOM05D000856', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000856', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p00010' => 'bna', 'A03p04160' => 'bna', 'A03p17160' => 'bna', 'A04p23370' => 'bna', 'A05p14860' => 'bna', 'A08p37020' => 'bna', 'A09p08050' => 'bna', 'A09p66800' => 'bna', 'A09p67940' => 'bna', 'A10p02680' => 'bna', 'A10p05320' => 'bna', 'Aa31LG1G20560' => 'aar', 'Aa31LG1G20610' => 'aar', 'Aa31LG1G7810' => 'aar', 'Aa31LG5G3590' => 'aar', 'Aa31LG5G6140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3819' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4683' => 'aag', 'Actinidia04480' => 'ach', 'Actinidia05466' => 'ach', 'Actinidia08445' => 'ach', 'Actinidia21170' => 'ach', 'Actinidia24812' => 'ach', 'Actinidia24951' => 'ach', 'Actinidia40088' => 'ach', 'Ah.02g111660' => 'amhyb', 'Ah.11g048900' => 'amhyb', 'Ah.11g049910' => 'amhyb', 'AL1G13870' => 'aly', 'AL1G13880' => 'aly', 'AL1G16760' => 'aly', 'AL390U10020' => 'aly', 'AL4G25520' => 'aly', 'AL6G19890' => 'aly', 'AL6G19900' => 'aly', 'AL6G19910' => 'aly', 'AL8G40100' => 'aly', 'Aqoxy2G03562' => 'aox', 'Aqoxy5G00316' => 'aox', 'Aqoxy5G00926' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1628KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1H403S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2FU6SJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.882I6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8YRY2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YN1SN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AF70II' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZA8L1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F916KL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHRD8H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KTZ8QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S22EMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8M29T' => 'arhy', 'AT1G04270' => 'ath', 'AT1G04280' => 'ath', 'AT1G06750' => 'ath', 'AT1G33850' => 'ath', 'AT2G30630' => 'ath', 'AT5G09490' => 'ath', 'AT5G09500' => 'ath', 'AT5G09510' => 'ath', 'AT5G43640' => 'ath', 'AT5G63070' => 'ath', 'ATR0605G315' => 'atr', 'Atru.chr11.175' => 'acertr', 'Atru.chr11.653' => 'acertr', 'Atru.chr3.1616' => 'acertr', 'Atru.chr4.2230' => 'acertr', 'Atru.chr4.2232' => 'acertr', 'Atru.chr5.1598' => 'acertr', 'Atru.chr5.1600' => 'acertr', 'Atru.chr5.2188' => 'acertr', 'AUR62008326' => 'cqu', 'AUR62011922' => 'cqu', 'AUR62011924' => 'cqu', 'AUR62021771' => 'cqu', 'AUR62032237' => 'cqu', 'AUR62032240' => 'cqu', 'BcaB01g05572' => 'bca', 'BcaB02g10337' => 'bca', 'BcaB04g19944' => 'bca', 'BcaB05g21548' => 'bca', 'BcaB05g21549' => 'bca', 'BcaB05g23227' => 'bca', 'BcaB06g26256' => 'bca', 'BcaB06g26257' => 'bca', 'BcaB06g28379' => 'bca', 'BcaC02g11159' => 'bca', 'BcaC03g13258' => 'bca', 'BcaC03g13259' => 'bca', 'BcaC05g24456' => 'bca', 'BcaC05g24457' => 'bca', 'BcaC07g36922' => 'bca', 'BcaC07g36923' => 'bca', 'BcaC07g42050' => 'bca', 'BcaC07g42176' => 'bca', 'BcaC07g42195' => 'bca', 'BcaC07g42196' => 'bca', 'BcaNung06674' => 'bca', 'BolC2t06351H' => 'bol', 'BolC2t06352H' => 'bol', 'BolC3t12993H' => 'bol', 'BolC4t23525H' => 'bol', 'BolC4t27475H' => 'bol', 'BolC5t29025H' => 'bol', 'BolC5t29026H' => 'bol', 'BolC8t46898H' => 'bol', 'BolC8t46899H' => 'bol', 'BolC8t52630H' => 'bol', 'BolC8t52765H' => 'bol', 'BolC9t53824H' => 'bol', 'BraA03t09760Z' => 'bra', 'BraA03t10990Z' => 'bra', 'BraA05t20413Z' => 'bra', 'BraA08t35602Z' => 'bra', 'BraA09t36458Z' => 'bra', 'BraA09t42018Z' => 'bra', 'BraA09t42129Z' => 'bra', 'BraA10t42536Z' => 'bra', 'BraA10t42537Z' => 'bra', 'C01p10690' => 'bna', 'C02p03890' => 'bna', 'C02p03900' => 'bna', 'C03p04620' => 'bna', 'C04p19870' => 'bna', 'C04p59670' => 'bna', 'C05p02460' => 'bna', 'C05p02470' => 'bna', 'C08p00980' => 'bna', 'C08p00990' => 'bna', 'C08p51030' => 'bna', 'C08p52360' => 'bna', 'C09p09120' => 'bna', 'CAN.G19.15' => 'can', 'CAN.G251.10' => 'can', 'CAN.G251.9' => 'can', 'CAN.G398.24' => 'can', 'CAN.G410.32' => 'can', 'CAN.G881.2' => 'can', 'CANSAT01G3025' => 'cansat', 'CANSAT78G1211' => 'cansat', 'CANSAT78G1218' => 'cansat', 'CANSAT78G1521' => 'cansat', 'CANSAT78G1670' => 'cansat', 'CARHR003600' => 'chi', 'CARHR003610' => 'chi', 'CARHR006290' => 'chi', 'CARHR006430' => 'chi', 'CARHR124110' => 'chi', 'CARHR203870' => 'chi', 'CARHR203880' => 'chi', 'CARHR203890' => 'chi', 'CARHR276880' => 'chi', 'Carub.0001s0346' => 'cru', 'Carub.0001s0347' => 'cru', 'Carub.0001s0607' => 'cru', 'Carub.0003s2768' => 'cru', 'Carub.0003s2769' => 'cru', 'Carub.0004s1178' => 'cru', 'Carub.0006s0806' => 'cru', 'Carub.0006s0807' => 'cru', 'Carub.0006s0808' => 'cru', 'Carub.0008s0501' => 'cru', 'Carub.0008s2379' => 'cru', 'Ca_08655_v3' => 'car', 'Ca_08922_v3' => 'car', 'Ca_08923_v3' => 'car', 'Ca_09119_v3' => 'car', 'Ca_09703_v3' => 'car', 'Ca_09705_v3' => 'car', 'Ca_09835_v3' => 'car', 'Ca_26403_v3' => 'car', 'Ca_30719_v3' => 'car', 'CBR_g17958' => 'cbr', 'CBR_g40516' => 'cbr', 'Cc00_g05350' => 'ccan', 'Cc01_g18690' => 'ccan', 'Cc03_g04830' => 'ccan', 'Cc03_g04850' => 'ccan', 'CDE02G4469' => 'cde', 'CDE06G0883' => 'cde', 'CDE06G1295' => 'cde', 'CDE06G1390' => 'cde', 'CDE07G0584' => 'cde', 'CDE07G1084' => 'cde', 'CDE08G1259' => 'cde', 'Cfa002341' => 'cfa', 'Cfa024337' => 'cfa', 'Ciclev10004749m.g' => 'ccl', 'Ciclev10006127m.g' => 'ccl', 'Ciclev10019720m.g' => 'ccl', 'Ciclev10022652m.g' => 'ccl', 'CiPaw.01G190400' => 'cil', 'CiPaw.01G190500' => 'cil', 'CiPaw.02G116400' => 'cil', 'CiPaw.02G116500' => 'cil', 'CiPaw.04G183000' => 'cil', 'CiPaw.04G183300' => 'cil', 'ClCG05G004610' => 'cla', 'ClCG05G004620' => 'cla', 'ClCG06G006730' => 'cla', 'ClCG06G006740' => 'cla', 'ClCG11G003690' => 'cla', 'COL.COLO4_08276' => 'col', 'COL.COLO4_08277' => 'col', 'COL.COLO4_15787' => 'col', 'COL.COLO4_15789' => 'col', 'Cpa.g.c44815' => 'cpa', 'Cpa.g.sc52.144' => 'cpa', 'Cpa.g.sc58.46' => 'cpa', 'Cpa.g.sc58.47' => 'cpa', 'Cre08.g360900' => 'cre', 'CsaV3_2G013030' => 'csa', 'CsaV3_2G013050' => 'csa', 'CsaV3_2G015620' => 'csa', 'CsaV3_3G012590' => 'csa', 'CsaV3_3G012600' => 'csa', 'CSS0001641' => 'camsi', 'CSS0008310' => 'camsi', 'CSS0013011' => 'camsi', 'CSS0017147' => 'camsi', 'CSS0022970' => 'camsi', 'CSS0025655' => 'camsi', 'CSS0028665' => 'camsi', 'CSS0029117' => 'camsi', 'CSS0032024' => 'camsi', 'CSS0039681' => 'camsi', 'CSS0046516' => 'camsi', 'CSS0050307' => 'camsi', 'DCAR_005871' => 'dca', 'DCAR_007342' => 'dca', 'DCAR_024228' => 'dca', 'DCAR_027277' => 'dca', 'DCAR_030718' => 'dca', 'Dinv20287' => 'din', 'Dinv22461' => 'din', 'Dinv22464' => 'din', 'Dinv29912' => 'din', 'Dinv29913' => 'din', 'Dinv34580' => 'din', 'Dinv34582' => 'din', 'Dinv44632' => 'din', 'Duzib052G0266' => 'dzi', 'Duzib133G0907' => 'dzi', 'Duzib133G1034' => 'dzi', 'Duzib138G0207' => 'dzi', 'Duzib138G0491' => 'dzi', 'Duzib151G0812' => 'dzi', 'Duzib151G1166' => 'dzi', 'Duzib168G0192' => 'dzi', 'Duzib211G0077' => 'dzi', 'Duzib212G0429' => 'dzi', 'Duzib212G0472' => 'dzi', 'ECA233G2617' => 'eca', 'ECA236G4188' => 'eca', 'ECA240G0936' => 'eca', 'ECA240G1129' => 'eca', 'ECA247G0623' => 'eca', 'EL10Ac5g10451' => 'bvu', 'EL10Ac5g10453' => 'bvu', 'EL10Ac5g10894' => 'bvu', 'Eucgr.H00192' => 'egr', 'Eucgr.H00193' => 'egr', 'Eucgr.H00194' => 'egr', 'Eucgr.J01562' => 'egr', 'Eucgr.K03301' => 'egr', 'FAN02G0632' => 'fan', 'FAN05G5378' => 'fan', 'FAN09G3247' => 'fan', 'FAN12G0435' => 'fan', 'FAN12G2426' => 'fan', 'FAN14G1707' => 'fan', 'FAN14G4725' => 'fan', 'FAN15G2071' => 'fan', 'FAN17G3065' => 'fan', 'FAN19G1376' => 'fan', 'FAN20G0354' => 'fan', 'FAN20G2429' => 'fan', 'FAN20G2658' => 'fan', 'FAN24G2343' => 'fan', 'FAN27G2362' => 'fan', 'FAN28G1765' => 'fan', 'FvH4_1g16020' => 'fve', 'FvH4_2g04890' => 'fve', 'FvH4_2g22270' => 'fve', 'FvH4_4g02630' => 'fve', 'FvH4_4g02640' => 'fve', 'FvH4_6g02650' => 'fve', 'Glyma.02G140600' => 'gma', 'Glyma.03G159900' => 'gma', 'Glyma.05G234800' => 'gma', 'Glyma.07G269600' => 'gma', 'Glyma.08G042300' => 'gma', 'Glyma.10G033500' => 'gma', 'Glyma.10G185200' => 'gma', 'Glyma.17G004300' => 'gma', 'Glyma.19G161900' => 'gma', 'Glyma.20G205100' => 'gma', 'Glyma.20G205200' => 'gma', 'Gohir.A01G139101' => 'ghi', 'Gohir.A02G035600' => 'ghi', 'Gohir.A02G117901' => 'ghi', 'Gohir.A07G210100' => 'ghi', 'Gohir.A07G210200' => 'ghi', 'Gohir.A08G061100' => 'ghi', 'Gohir.A09G223000' => 'ghi', 'Gohir.A09G223100' => 'ghi', 'Gohir.A10G113900' => 'ghi', 'Gohir.A10G114000' => 'ghi', 'Gohir.D02G042300' => 'ghi', 'Gohir.D07G216100' => 'ghi', 'Gohir.D07G216200' => 'ghi', 'Gohir.D08G070400' => 'ghi', 'Gohir.D09G225000' => 'ghi', 'Gohir.D09G225100' => 'ghi', 'Gohir.D10G152300' => 'ghi', 'Gohir.D10G153200' => 'ghi', 'Gohir.D11G133701' => 'ghi', 'Gorai.004G074100' => 'gra', 'Gorai.005G046800' => 'gra', 'Gorai.006G246500' => 'gra', 'Gorai.006G246600' => 'gra', 'Gorai.007G142900' => 'gra', 'Gorai.011G171000' => 'gra', 'Gorai.011G171100' => 'gra', 'Gorai.013G104300' => 'gra', 'Gorai.013G104400' => 'gra', 'GSVIVG01000754001' => 'vvi', 'GSVIVG01000756001' => 'vvi', 'GSVIVG01010903001' => 'vvi', 'GSVIVG01017623001' => 'vvi', 'GSVIVG01018113001' => 'vvi', 'GSVIVG01018116001' => 'vvi', 'GSVIVG01018118001' => 'vvi', 'HanXRQChr03g0076211' => 'han', 'HanXRQChr03g0092431' => 'han', 'HanXRQChr03g0092441' => 'han', 'HanXRQChr03g0092591' => 'han', 'HanXRQChr03g0092671' => 'han', 'HanXRQChr03g0092681' => 'han', 'HanXRQChr03g0092691' => 'han', 'HanXRQChr03g0092701' => 'han', 'HanXRQChr03g0092721' => 'han', 'HanXRQChr03g0092731' => 'han', 'HanXRQChr04g0113681' => 'han', 'HanXRQChr10g0281371' => 'han', 'HanXRQChr11g0337141' => 'han', 'HanXRQChr13g0424521' => 'han', 'HanXRQChr13g0424531' => 'han', 'HanXRQChr13g0424541' => 'han', 'HanXRQChr16g0498221' => 'han', 'Haze_04377' => 'cav', 'Haze_11298' => 'cav', 'Haze_24547' => 'cav', 'Haze_24550' => 'cav', 'Haze_26587' => 'cav', 'Hma1.2p1_0650F.1_g195410' => 'hma', 'Hma1.2p1_0893F.1_g233470' => 'hma', 'HPP92_006508' => 'vpl', 'HPP92_024780' => 'vpl', 'Hund02688' => 'sun', 'Hund09380' => 'sun', 'Hund09381' => 'sun', 'Hund09832' => 'sun', 'Hund09833' => 'sun', 'Hund11351' => 'sun', 'Hund11513' => 'sun', 'Lalb_Chr06g0162591' => 'lal', 'Lalb_Chr06g0162601' => 'lal', 'Lalb_Chr06g0169321' => 'lal', 'Lalb_Chr09g0330951' => 'lal', 'Lalb_Chr16g0387631' => 'lal', 'Lalb_Chr21g0306241' => 'lal', 'Lalb_Chr25g0290051' => 'lal', 'Lalb_Chr25g0290061' => 'lal', 'Lalb_Chr25g0290071' => 'lal', 'Lj1g0003876' => 'lja', 'Lj1P1207T36' => 'lonja', 'Lj2C1156G12' => 'lonja', 'Lj3A793G39' => 'lonja', 'Lj3C580G2' => 'lonja', 'Lj3C780G2' => 'lonja', 'Lj3C780T4' => 'lonja', 'Lj3C793G9' => 'lonja', 'Lj4g0012960' => 'lja', 'Lj5g0021252' => 'lja', 'Lj5g0021484' => 'lja', 'Lj5g0024528' => 'lja', 'Lj6A399T12' => 'lonja', 'Lj6A656G65' => 'lonja', 'Lsat_1_v5_gn_3_125500' => 'lsa', 'Lsat_1_v5_gn_3_125540' => 'lsa', 'Lsat_1_v5_gn_5_72701' => 'lsa', 'Lsat_1_v5_gn_8_91560' => 'lsa', 'Lsat_1_v5_gn_9_9640' => 'lsa', 'Manes.01G200600' => 'mes', 'Manes.01G200700' => 'mes', 'Manes.03G168900' => 'mes', 'Manes.03G169000' => 'mes', 'Manes.05G085801' => 'mes', 'Manes.05G086200' => 'mes', 'Manes.15G036700' => 'mes', 'Manes.15G036900' => 'mes', 'Mapoly0004s0172' => 'mpo', 'Mapoly0023s0001' => 'mpo', 'Mapoly0142s0012' => 'mpo', 'MBI01_g32854_MAGBIO' => 'mbi', 'MBI11_g24427_MAGBIO' => 'mbi', 'MBI11_g47319_MAGBIO' => 'mbi', 'MCO01G433' => 'mco', 'MD00G1187800' => 'mdo', 'MD04G1226500' => 'mdo', 'MD05G1203900' => 'mdo', 'MD10G1191100' => 'mdo', 'MD12G1243500' => 'mdo', 'MD13G1207000' => 'mdo', 'MD13G1207100' => 'mdo', 'MD16G1208600' => 'mdo', 'Medtr1g050352' => 'mtr', 'Medtr1g070385' => 'mtr', 'Medtr1g070450' => 'mtr', 'Medtr1g075200' => 'mtr', 'Medtr1g075250' => 'mtr', 'Medtr1g075260' => 'mtr', 'Medtr1g475250' => 'mtr', 'Medtr4g075450' => 'mtr', 'Medtr7g096300' => 'mtr', 'Medtr8g105110' => 'mtr', 'MELO3C006470.2' => 'cme', 'MELO3C006471.2' => 'cme', 'MELO3C020772.2' => 'cme', 'MELO3C026780.2' => 'cme', 'MELO3C026781.2' => 'cme', 'Migut.D00390' => 'egut', 'Migut.G00435' => 'egut', 'Migut.G00436' => 'egut', 'Migut.G00718' => 'egut', 'MSTRG.21891' => 'ama', 'MSTRG.26910' => 'ama', 'MSTRG.4099' => 'ama', 'MSTRG.9925' => 'ama', 'Nitab4.5_0000165g0010' => 'nta', 'Nitab4.5_0000209g0180' => 'nta', 'Nitab4.5_0000244g0440' => 'nta', 'Nitab4.5_0000525g0220' => 'nta', 'Nitab4.5_0001597g0020' => 'nta', 'Nitab4.5_0001878g0040' => 'nta', 'Nitab4.5_0001878g0060' => 'nta', 'Nitab4.5_0002838g0100' => 'nta', 'Nitab4.5_0002838g0120' => 'nta', 'Nitab4.5_0004798g0030' => 'nta', 'Nitab4.5_0005420g0010' => 'nta', 'Nitab4.5_0005507g0010' => 'nta', 'Nitab4.5_0005574g0020' => 'nta', 'Nitab4.5_0005838g0010' => 'nta', 'Nitab4.5_0010580g0020' => 'nta', 'Nn1g02599' => 'nnu', 'Nn1g02608' => 'nnu', 'Nn3g17742' => 'nnu', 'Nn3g19534' => 'nnu', 'Nn3g19535' => 'nnu', 'Oeu008790.1' => 'oeu', 'Oeu008792.1' => 'oeu', 'Oeu032590.1' => 'oeu', 'Oeu035349.1' => 'oeu', 'Oeu049791.1' => 'oeu', 'Os01g0774500' => 'osa', 'Os03g0628800' => 'osa', 'Os03g0798600' => 'osa', 'Os05g0508800' => 'osa', 'Peaxi162Scf00036g02018' => 'pax', 'Peaxi162Scf00578g00032' => 'pax', 'Peaxi162Scf00578g00317' => 'pax', 'Peaxi162Scf00785g00114' => 'pax', 'Peaxi162Scf00813g00119' => 'pax', 'Peaxi162Scf00906g00227' => 'pax', 'PGR004G0875' => 'pgr', 'PGR004G2424' => 'pgr', 'PGR031G1239' => 'pgr', 'PGR031G2474' => 'pgr', 'PGR044G0423' => 'pgr', 'PGSC0003DMG400001128' => 'stu', 'PGSC0003DMG400007336' => 'stu', 'PGSC0003DMG400016318' => 'stu', 'PGSC0003DMG400016319' => 'stu', 'PGSC0003DMG400018074' => 'stu', 'Phvul.001G157700' => 'pvu', 'Phvul.002G148550' => 'pvu', 'Phvul.002G320200' => 'pvu', 'Phvul.003G089200' => 'pvu', 'Phvul.007G126000' => 'pvu', 'Phvul.007G126100' => 'pvu', 'Phvul.007G178000' => 'pvu', 'Phvul.007G178200' => 'pvu', 'Potri.002G043000' => 'ptr', 'Potri.002G043200' => 'ptr', 'Potri.003G123750' => 'ptr', 'Potri.005G055401' => 'ptr', 'Potri.005G219700' => 'ptr', 'Potri.005G220000' => 'ptr', 'Potri.008G161901' => 'ptr', 'Potri.008G162000' => 'ptr', 'Potri.008G162400' => 'ptr', 'Potri.010G076900' => 'ptr', 'Pp3c12_9180' => 'ppa', 'Pp3c13_19770' => 'ppa', 'Pp3c14_22950' => 'ppa', 'Pp3c16_12160' => 'ppa', 'Pp3c27_7820' => 'ppa', 'Pp3c2_3490' => 'ppa', 'Pp3c3_23700' => 'ppa', 'Pp3c3_36520' => 'ppa', 'Pp3c4_15250' => 'ppa', 'PRCOL_00007002' => 'pco', 'Prupe.1G030600' => 'ppe', 'Prupe.1G030700' => 'ppe', 'Prupe.6G345200' => 'ppe', 'Prupe.8G230300' => 'ppe', 'Prupe.8G230500' => 'ppe', 'Psat3g059600' => 'psa', 'Psat5g200920' => 'psa', 'Psat6g056440' => 'psa', 'Psat6g057360' => 'psa', 'Psat6g134120' => 'psa', 'Psat6g134160' => 'psa', 'Psat7g008640' => 'psa', 'Psat7g185240' => 'psa', 'PSO017G1330' => 'pso', 'PSO063G6097' => 'pso', 'PSO170G0835' => 'pso', 'PSO170G2499' => 'pso', 'PSO210G5058' => 'pso', 'PSO210G6154' => 'pso', 'PSO585G0031' => 'pso', 'PSO832G0264' => 'pso', 'PSO832G4288' => 'pso', 'QL03p027355' => 'qlo', 'QL03p027430' => 'qlo', 'QL04p081380' => 'qlo', 'QL06p015642' => 'qlo', 'QL06p015650' => 'qlo', 'QL06p015686' => 'qlo', 'QL12p042927' => 'qlo', 'QL93p1863_0035' => 'qlo', 'RcHm_v2.0_Chr3g0450581' => 'rch', 'RcHm_v2.0_Chr4g0390371' => 'rch', 'RcHm_v2.0_Chr4g0390381' => 'rch', 'RcHm_v2.0_Chr4g0390491' => 'rch', 'RcHm_v2.0_Chr4g0390501' => 'rch', 'RcHm_v2.0_Chr6g0289231' => 'rch', 'Rhsim04G0190400' => 'rsi', 'Rhsim04G0190500' => 'rsi', 'Rhsim04G0190600' => 'rsi', 'Rhsim13G0031400' => 'rsi', 'Rhsim13G0165600' => 'rsi', 'RhsimUnG0114600' => 'rsi', 'RhsimUnG0114700' => 'rsi', 'Sabra02G0034800' => 'sbr', 'Sabra02G0035100' => 'sbr', 'Sabra05G0168600' => 'sbr', 'Sabra05G0168800' => 'sbr', 'Sabra08G0123700' => 'sbr', 'Sabra10G0031900' => 'sbr', 'Sabra13G0039000' => 'sbr', 'SalBow2G0782' => 'sbo', 'SalBow2G1403' => 'sbo', 'SalBow4G0074' => 'sbo', 'SalBow4G2635' => 'sbo', 'SalBow5G3010' => 'sbo', 'Sc05g0000870' => 'sci', 'Sc05g0000890' => 'sci', 'Sc13g0005000' => 'sci', 'Sc13g0005030' => 'sci', 'Sc19g0003790' => 'sci', 'Sc19g0003800' => 'sci', 'Sed0003467' => 'sed', 'Sed0009355' => 'sed', 'Sed0009894' => 'sed', 'Sed0011972' => 'sed', 'Sed0021483' => 'sed', 'Sed0021750' => 'sed', 'Sed0026279' => 'sed', 'SEGI_05312' => 'sgi', 'SEGI_10112' => 'sgi', 'SEGI_15835' => 'sgi', 'SEGI_30386' => 'sgi', 'SEGI_34122' => 'sgi', 'SEGI_35063' => 'sgi', 'SGA_v2.0_scaffold101G29794' => 'sas', 'SGA_v2.0_scaffold1G00573' => 'sas', 'SGA_v2.0_scaffold79G25637' => 'sas', 'SGA_v2.0_scaffold88G27283' => 'sas', 'SGA_v2.0_scaffold88G27285' => 'sas', 'SGA_v2.0_scaffold88G27331' => 'sas', 'SHI09937' => 'shi', 'SMO119G0302' => 'smo', 'SMO137G0231' => 'smo', 'SMO367G1151' => 'smo', 'Solyc02g082000.3' => 'sly', 'Solyc06g031670.3' => 'sly', 'Solyc06g053810.3' => 'sly', 'Solyc07g025457.1' => 'sly', 'Solyc08g059740.1' => 'sly', 'Solyc08g059750.3' => 'sly', 'Solyc09g083370.3' => 'sly', 'Solyc12g038950.3' => 'sly', 'Sopen02g026630' => 'spe', 'Sopen06g018930' => 'spe', 'Sopen06g018940' => 'spe', 'Sopen08g009460' => 'spe', 'Sopen09g032290' => 'spe', 'Sp1g03080' => 'spa', 'Sp1g03090' => 'spa', 'Sp1g05480' => 'spa', 'Sp2g07860' => 'spa', 'Sp2g08430' => 'spa', 'Sp2g08440' => 'spa', 'Sp2g26200' => 'spa', 'Sp4g13170' => 'spa', 'Sp6g33840' => 'spa', 'SpUn1204_0010' => 'spa', 'TAR365G0908' => 'tar', 'TAR381G1270' => 'tar', 'TAR381G1651' => 'tar', 'TAR625G1131' => 'tar', 'TAR633G0962' => 'tar', 'TAR633G1729' => 'tar', 'TAR633G1864' => 'tar', 'TAR636G0221' => 'tar', 'TAR636G0314' => 'tar', 'TAR636G3202' => 'tar', 'THA.LOC104800805' => 'tha', 'THA.LOC104801096' => 'tha', 'THA.LOC104801555' => 'tha', 'THA.LOC104808491' => 'tha', 'THA.LOC104808595' => 'tha', 'THA.LOC104815985' => 'tha', 'THA.LOC104822250' => 'tha', 'THA.LOC104826071' => 'tha', 'Thecc.01G265200' => 'tca', 'Thecc.01G265300' => 'tca', 'Thecc.01G265700' => 'tca', 'Thecc.03G109100' => 'tca', 'Thecc.04G245900' => 'tca', 'Thecc.04G246000' => 'tca', 'Thhalv10003334m.g' => 'esa', 'Thhalv10005508m.g' => 'esa', 'Thhalv10005643m.g' => 'esa', 'Thhalv10007316m.g' => 'esa', 'Thhalv10009006m.g' => 'esa', 'Thhalv10009309m.g' => 'esa', 'Thhalv10014917m.g' => 'esa', 'Thhalv10014919m.g' => 'esa', 'Thhalv10015393m.g' => 'esa', 'Thhalv10016515m.g' => 'esa', 'Thhalv10029242m.g' => 'esa', 'TPR.G16654' => 'tpr', 'TPR.G20589' => 'tpr', 'TPR.G23029' => 'tpr', 'TPR.G27731' => 'tpr', 'TPR.G28889' => 'tpr', 'TPR.G28899' => 'tpr', 'TPR.G30846' => 'tpr', 'TPR.G5452' => 'tpr', 'TPR.G5713' => 'tpr', 'TPR.G9046' => 'tpr', 'TPR.G9061' => 'tpr', 'TWI09G1075' => 'twi', 'TWI12G0806' => 'twi', 'TWI18G0108' => 'twi', 'TWI53G1361' => 'twi', 'TWI73G0185' => 'twi', 'TWI73G0427' => 'twi', 'unitig_37.g12001' => 'ugi', 'unitig_747.g21660' => 'ugi', 'unitig_748.g7232' => 'ugi', 'unitig_748.g7315' => 'ugi', 'unitig_85.g27262' => 'ugi', 'unitig_92.g28220' => 'ugi', 'vmacro02632' => 'vma', 'vmacro08410' => 'vma', 'vmacro08411' => 'vma', 'vmacro15407' => 'vma', 'VMungo0251G3619' => 'vmu', 'VMungo0720G1204' => 'vmu', 'VMungo0720G1918' => 'vmu', 'VMungo0720G2387' => 'vmu', 'VMungo0720G2961' => 'vmu', 'VMungo1215G2154' => 'vmu', 'VMungo1383G2411' => 'vmu', 'Zm00001eb051130' => 'zma', 'Zm00001eb116830' => 'zma', 'Zm00001eb116850' => 'zma', 'Zm00001eb151740' => 'zma', 'Zm00001eb292360' => 'zma', 'Zm00001eb301640' => 'zma' ) $gf_id = 'HOM05D000856' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000856' ) $data_identifier = 'HOM05D000856' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 13, 'ath' => (int) 10, 'atr' => (int) 1, 'acertr' => (int) 8, 'cqu' => (int) 6, 'bca' => (int) 21, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 11, 'car' => (int) 9, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 8, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 5, 'fan' => (int) 16, 'fve' => (int) 6, 'gma' => (int) 11, 'ghi' => (int) 19, 'gra' => (int) 9, 'vvi' => (int) 7, 'han' => (int) 17, 'cav' => (int) 5, 'hma' => (int) 2, 'vpl' => (int) 2, 'sun' => (int) 7, 'lal' => (int) 9, 'lja' => (int) 5, 'lonja' => (int) 9, 'lsa' => (int) 5, 'mes' => (int) 8, 'mpo' => (int) 3, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 10, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 15, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 9, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 9, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 6, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 5, 'spa' => (int) 10, 'tar' => (int) 10, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 11, 'tpr' => (int) 11, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 4, 'vmu' => (int) 7, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb301640' $species_info = array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ) $local_species = 'cme' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000856', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p00010' => 'bna', 'A03p04160' => 'bna', 'A03p17160' => 'bna', 'A04p23370' => 'bna', 'A05p14860' => 'bna', 'A08p37020' => 'bna', 'A09p08050' => 'bna', 'A09p66800' => 'bna', 'A09p67940' => 'bna', 'A10p02680' => 'bna', 'A10p05320' => 'bna', 'Aa31LG1G20560' => 'aar', 'Aa31LG1G20610' => 'aar', 'Aa31LG1G7810' => 'aar', 'Aa31LG5G3590' => 'aar', 'Aa31LG5G6140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3819' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4683' => 'aag', 'Actinidia04480' => 'ach', 'Actinidia05466' => 'ach', 'Actinidia08445' => 'ach', 'Actinidia21170' => 'ach', 'Actinidia24812' => 'ach', 'Actinidia24951' => 'ach', 'Actinidia40088' => 'ach', 'Ah.02g111660' => 'amhyb', 'Ah.11g048900' => 'amhyb', 'Ah.11g049910' => 'amhyb', 'AL1G13870' => 'aly', 'AL1G13880' => 'aly', 'AL1G16760' => 'aly', 'AL390U10020' => 'aly', 'AL4G25520' => 'aly', 'AL6G19890' => 'aly', 'AL6G19900' => 'aly', 'AL6G19910' => 'aly', 'AL8G40100' => 'aly', 'Aqoxy2G03562' => 'aox', 'Aqoxy5G00316' => 'aox', 'Aqoxy5G00926' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1628KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1H403S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2FU6SJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.882I6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8YRY2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YN1SN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AF70II' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZA8L1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F916KL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHRD8H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KTZ8QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S22EMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8M29T' => 'arhy', 'AT1G04270' => 'ath', 'AT1G04280' => 'ath', 'AT1G06750' => 'ath', 'AT1G33850' => 'ath', 'AT2G30630' => 'ath', 'AT5G09490' => 'ath', 'AT5G09500' => 'ath', 'AT5G09510' => 'ath', 'AT5G43640' => 'ath', 'AT5G63070' => 'ath', 'ATR0605G315' => 'atr', 'Atru.chr11.175' => 'acertr', 'Atru.chr11.653' => 'acertr', 'Atru.chr3.1616' => 'acertr', 'Atru.chr4.2230' => 'acertr', 'Atru.chr4.2232' => 'acertr', 'Atru.chr5.1598' => 'acertr', 'Atru.chr5.1600' => 'acertr', 'Atru.chr5.2188' => 'acertr', 'AUR62008326' => 'cqu', 'AUR62011922' => 'cqu', 'AUR62011924' => 'cqu', 'AUR62021771' => 'cqu', 'AUR62032237' => 'cqu', 'AUR62032240' => 'cqu', 'BcaB01g05572' => 'bca', 'BcaB02g10337' => 'bca', 'BcaB04g19944' => 'bca', 'BcaB05g21548' => 'bca', 'BcaB05g21549' => 'bca', 'BcaB05g23227' => 'bca', 'BcaB06g26256' => 'bca', 'BcaB06g26257' => 'bca', 'BcaB06g28379' => 'bca', 'BcaC02g11159' => 'bca', 'BcaC03g13258' => 'bca', 'BcaC03g13259' => 'bca', 'BcaC05g24456' => 'bca', 'BcaC05g24457' => 'bca', 'BcaC07g36922' => 'bca', 'BcaC07g36923' => 'bca', 'BcaC07g42050' => 'bca', 'BcaC07g42176' => 'bca', 'BcaC07g42195' => 'bca', 'BcaC07g42196' => 'bca', 'BcaNung06674' => 'bca', 'BolC2t06351H' => 'bol', 'BolC2t06352H' => 'bol', 'BolC3t12993H' => 'bol', 'BolC4t23525H' => 'bol', 'BolC4t27475H' => 'bol', 'BolC5t29025H' => 'bol', 'BolC5t29026H' => 'bol', 'BolC8t46898H' => 'bol', 'BolC8t46899H' => 'bol', 'BolC8t52630H' => 'bol', 'BolC8t52765H' => 'bol', 'BolC9t53824H' => 'bol', 'BraA03t09760Z' => 'bra', 'BraA03t10990Z' => 'bra', 'BraA05t20413Z' => 'bra', 'BraA08t35602Z' => 'bra', 'BraA09t36458Z' => 'bra', 'BraA09t42018Z' => 'bra', 'BraA09t42129Z' => 'bra', 'BraA10t42536Z' => 'bra', 'BraA10t42537Z' => 'bra', 'C01p10690' => 'bna', 'C02p03890' => 'bna', 'C02p03900' => 'bna', 'C03p04620' => 'bna', 'C04p19870' => 'bna', 'C04p59670' => 'bna', 'C05p02460' => 'bna', 'C05p02470' => 'bna', 'C08p00980' => 'bna', 'C08p00990' => 'bna', 'C08p51030' => 'bna', 'C08p52360' => 'bna', 'C09p09120' => 'bna', 'CAN.G19.15' => 'can', 'CAN.G251.10' => 'can', 'CAN.G251.9' => 'can', 'CAN.G398.24' => 'can', 'CAN.G410.32' => 'can', 'CAN.G881.2' => 'can', 'CANSAT01G3025' => 'cansat', 'CANSAT78G1211' => 'cansat', 'CANSAT78G1218' => 'cansat', 'CANSAT78G1521' => 'cansat', 'CANSAT78G1670' => 'cansat', 'CARHR003600' => 'chi', 'CARHR003610' => 'chi', 'CARHR006290' => 'chi', 'CARHR006430' => 'chi', 'CARHR124110' => 'chi', 'CARHR203870' => 'chi', 'CARHR203880' => 'chi', 'CARHR203890' => 'chi', 'CARHR276880' => 'chi', 'Carub.0001s0346' => 'cru', 'Carub.0001s0347' => 'cru', 'Carub.0001s0607' => 'cru', 'Carub.0003s2768' => 'cru', 'Carub.0003s2769' => 'cru', 'Carub.0004s1178' => 'cru', 'Carub.0006s0806' => 'cru', 'Carub.0006s0807' => 'cru', 'Carub.0006s0808' => 'cru', 'Carub.0008s0501' => 'cru', 'Carub.0008s2379' => 'cru', 'Ca_08655_v3' => 'car', 'Ca_08922_v3' => 'car', 'Ca_08923_v3' => 'car', 'Ca_09119_v3' => 'car', 'Ca_09703_v3' => 'car', 'Ca_09705_v3' => 'car', 'Ca_09835_v3' => 'car', 'Ca_26403_v3' => 'car', 'Ca_30719_v3' => 'car', 'CBR_g17958' => 'cbr', 'CBR_g40516' => 'cbr', 'Cc00_g05350' => 'ccan', 'Cc01_g18690' => 'ccan', 'Cc03_g04830' => 'ccan', 'Cc03_g04850' => 'ccan', 'CDE02G4469' => 'cde', 'CDE06G0883' => 'cde', 'CDE06G1295' => 'cde', 'CDE06G1390' => 'cde', 'CDE07G0584' => 'cde', 'CDE07G1084' => 'cde', 'CDE08G1259' => 'cde', 'Cfa002341' => 'cfa', 'Cfa024337' => 'cfa', 'Ciclev10004749m.g' => 'ccl', 'Ciclev10006127m.g' => 'ccl', 'Ciclev10019720m.g' => 'ccl', 'Ciclev10022652m.g' => 'ccl', 'CiPaw.01G190400' => 'cil', 'CiPaw.01G190500' => 'cil', 'CiPaw.02G116400' => 'cil', 'CiPaw.02G116500' => 'cil', 'CiPaw.04G183000' => 'cil', 'CiPaw.04G183300' => 'cil', 'ClCG05G004610' => 'cla', 'ClCG05G004620' => 'cla', 'ClCG06G006730' => 'cla', 'ClCG06G006740' => 'cla', 'ClCG11G003690' => 'cla', 'COL.COLO4_08276' => 'col', 'COL.COLO4_08277' => 'col', 'COL.COLO4_15787' => 'col', 'COL.COLO4_15789' => 'col', 'Cpa.g.c44815' => 'cpa', 'Cpa.g.sc52.144' => 'cpa', 'Cpa.g.sc58.46' => 'cpa', 'Cpa.g.sc58.47' => 'cpa', 'Cre08.g360900' => 'cre', 'CsaV3_2G013030' => 'csa', 'CsaV3_2G013050' => 'csa', 'CsaV3_2G015620' => 'csa', 'CsaV3_3G012590' => 'csa', 'CsaV3_3G012600' => 'csa', 'CSS0001641' => 'camsi', 'CSS0008310' => 'camsi', 'CSS0013011' => 'camsi', 'CSS0017147' => 'camsi', 'CSS0022970' => 'camsi', 'CSS0025655' => 'camsi', 'CSS0028665' => 'camsi', 'CSS0029117' => 'camsi', 'CSS0032024' => 'camsi', 'CSS0039681' => 'camsi', 'CSS0046516' => 'camsi', 'CSS0050307' => 'camsi', 'DCAR_005871' => 'dca', 'DCAR_007342' => 'dca', 'DCAR_024228' => 'dca', 'DCAR_027277' => 'dca', 'DCAR_030718' => 'dca', 'Dinv20287' => 'din', 'Dinv22461' => 'din', 'Dinv22464' => 'din', 'Dinv29912' => 'din', 'Dinv29913' => 'din', 'Dinv34580' => 'din', 'Dinv34582' => 'din', 'Dinv44632' => 'din', 'Duzib052G0266' => 'dzi', 'Duzib133G0907' => 'dzi', 'Duzib133G1034' => 'dzi', 'Duzib138G0207' => 'dzi', 'Duzib138G0491' => 'dzi', 'Duzib151G0812' => 'dzi', 'Duzib151G1166' => 'dzi', 'Duzib168G0192' => 'dzi', 'Duzib211G0077' => 'dzi', 'Duzib212G0429' => 'dzi', 'Duzib212G0472' => 'dzi', 'ECA233G2617' => 'eca', 'ECA236G4188' => 'eca', 'ECA240G0936' => 'eca', 'ECA240G1129' => 'eca', 'ECA247G0623' => 'eca', 'EL10Ac5g10451' => 'bvu', 'EL10Ac5g10453' => 'bvu', 'EL10Ac5g10894' => 'bvu', 'Eucgr.H00192' => 'egr', 'Eucgr.H00193' => 'egr', 'Eucgr.H00194' => 'egr', 'Eucgr.J01562' => 'egr', 'Eucgr.K03301' => 'egr', 'FAN02G0632' => 'fan', 'FAN05G5378' => 'fan', 'FAN09G3247' => 'fan', 'FAN12G0435' => 'fan', 'FAN12G2426' => 'fan', 'FAN14G1707' => 'fan', 'FAN14G4725' => 'fan', 'FAN15G2071' => 'fan', 'FAN17G3065' => 'fan', 'FAN19G1376' => 'fan', 'FAN20G0354' => 'fan', 'FAN20G2429' => 'fan', 'FAN20G2658' => 'fan', 'FAN24G2343' => 'fan', 'FAN27G2362' => 'fan', 'FAN28G1765' => 'fan', 'FvH4_1g16020' => 'fve', 'FvH4_2g04890' => 'fve', 'FvH4_2g22270' => 'fve', 'FvH4_4g02630' => 'fve', 'FvH4_4g02640' => 'fve', 'FvH4_6g02650' => 'fve', 'Glyma.02G140600' => 'gma', 'Glyma.03G159900' => 'gma', 'Glyma.05G234800' => 'gma', 'Glyma.07G269600' => 'gma', 'Glyma.08G042300' => 'gma', 'Glyma.10G033500' => 'gma', 'Glyma.10G185200' => 'gma', 'Glyma.17G004300' => 'gma', 'Glyma.19G161900' => 'gma', 'Glyma.20G205100' => 'gma', 'Glyma.20G205200' => 'gma', 'Gohir.A01G139101' => 'ghi', 'Gohir.A02G035600' => 'ghi', 'Gohir.A02G117901' => 'ghi', 'Gohir.A07G210100' => 'ghi', 'Gohir.A07G210200' => 'ghi', 'Gohir.A08G061100' => 'ghi', 'Gohir.A09G223000' => 'ghi', 'Gohir.A09G223100' => 'ghi', 'Gohir.A10G113900' => 'ghi', 'Gohir.A10G114000' => 'ghi', 'Gohir.D02G042300' => 'ghi', 'Gohir.D07G216100' => 'ghi', 'Gohir.D07G216200' => 'ghi', 'Gohir.D08G070400' => 'ghi', 'Gohir.D09G225000' => 'ghi', 'Gohir.D09G225100' => 'ghi', 'Gohir.D10G152300' => 'ghi', 'Gohir.D10G153200' => 'ghi', 'Gohir.D11G133701' => 'ghi', 'Gorai.004G074100' => 'gra', 'Gorai.005G046800' => 'gra', 'Gorai.006G246500' => 'gra', 'Gorai.006G246600' => 'gra', 'Gorai.007G142900' => 'gra', 'Gorai.011G171000' => 'gra', 'Gorai.011G171100' => 'gra', 'Gorai.013G104300' => 'gra', 'Gorai.013G104400' => 'gra', 'GSVIVG01000754001' => 'vvi', 'GSVIVG01000756001' => 'vvi', 'GSVIVG01010903001' => 'vvi', 'GSVIVG01017623001' => 'vvi', 'GSVIVG01018113001' => 'vvi', 'GSVIVG01018116001' => 'vvi', 'GSVIVG01018118001' => 'vvi', 'HanXRQChr03g0076211' => 'han', 'HanXRQChr03g0092431' => 'han', 'HanXRQChr03g0092441' => 'han', 'HanXRQChr03g0092591' => 'han', 'HanXRQChr03g0092671' => 'han', 'HanXRQChr03g0092681' => 'han', 'HanXRQChr03g0092691' => 'han', 'HanXRQChr03g0092701' => 'han', 'HanXRQChr03g0092721' => 'han', 'HanXRQChr03g0092731' => 'han', 'HanXRQChr04g0113681' => 'han', 'HanXRQChr10g0281371' => 'han', 'HanXRQChr11g0337141' => 'han', 'HanXRQChr13g0424521' => 'han', 'HanXRQChr13g0424531' => 'han', 'HanXRQChr13g0424541' => 'han', 'HanXRQChr16g0498221' => 'han', 'Haze_04377' => 'cav', 'Haze_11298' => 'cav', 'Haze_24547' => 'cav', 'Haze_24550' => 'cav', 'Haze_26587' => 'cav', 'Hma1.2p1_0650F.1_g195410' => 'hma', 'Hma1.2p1_0893F.1_g233470' => 'hma', 'HPP92_006508' => 'vpl', 'HPP92_024780' => 'vpl', 'Hund02688' => 'sun', 'Hund09380' => 'sun', 'Hund09381' => 'sun', 'Hund09832' => 'sun', 'Hund09833' => 'sun', 'Hund11351' => 'sun', 'Hund11513' => 'sun', 'Lalb_Chr06g0162591' => 'lal', 'Lalb_Chr06g0162601' => 'lal', 'Lalb_Chr06g0169321' => 'lal', 'Lalb_Chr09g0330951' => 'lal', 'Lalb_Chr16g0387631' => 'lal', 'Lalb_Chr21g0306241' => 'lal', 'Lalb_Chr25g0290051' => 'lal', 'Lalb_Chr25g0290061' => 'lal', 'Lalb_Chr25g0290071' => 'lal', 'Lj1g0003876' => 'lja', 'Lj1P1207T36' => 'lonja', 'Lj2C1156G12' => 'lonja', 'Lj3A793G39' => 'lonja', 'Lj3C580G2' => 'lonja', 'Lj3C780G2' => 'lonja', 'Lj3C780T4' => 'lonja', 'Lj3C793G9' => 'lonja', 'Lj4g0012960' => 'lja', 'Lj5g0021252' => 'lja', 'Lj5g0021484' => 'lja', 'Lj5g0024528' => 'lja', 'Lj6A399T12' => 'lonja', 'Lj6A656G65' => 'lonja', 'Lsat_1_v5_gn_3_125500' => 'lsa', 'Lsat_1_v5_gn_3_125540' => 'lsa', 'Lsat_1_v5_gn_5_72701' => 'lsa', 'Lsat_1_v5_gn_8_91560' => 'lsa', 'Lsat_1_v5_gn_9_9640' => 'lsa', 'Manes.01G200600' => 'mes', 'Manes.01G200700' => 'mes', 'Manes.03G168900' => 'mes', 'Manes.03G169000' => 'mes', 'Manes.05G085801' => 'mes', 'Manes.05G086200' => 'mes', 'Manes.15G036700' => 'mes', 'Manes.15G036900' => 'mes', 'Mapoly0004s0172' => 'mpo', 'Mapoly0023s0001' => 'mpo', 'Mapoly0142s0012' => 'mpo', 'MBI01_g32854_MAGBIO' => 'mbi', 'MBI11_g24427_MAGBIO' => 'mbi', 'MBI11_g47319_MAGBIO' => 'mbi', 'MCO01G433' => 'mco', 'MD00G1187800' => 'mdo', 'MD04G1226500' => 'mdo', 'MD05G1203900' => 'mdo', 'MD10G1191100' => 'mdo', 'MD12G1243500' => 'mdo', 'MD13G1207000' => 'mdo', 'MD13G1207100' => 'mdo', 'MD16G1208600' => 'mdo', 'Medtr1g050352' => 'mtr', 'Medtr1g070385' => 'mtr', 'Medtr1g070450' => 'mtr', 'Medtr1g075200' => 'mtr', 'Medtr1g075250' => 'mtr', 'Medtr1g075260' => 'mtr', 'Medtr1g475250' => 'mtr', 'Medtr4g075450' => 'mtr', 'Medtr7g096300' => 'mtr', 'Medtr8g105110' => 'mtr', 'MELO3C006470.2' => 'cme', 'MELO3C006471.2' => 'cme', 'MELO3C020772.2' => 'cme', 'MELO3C026780.2' => 'cme', 'MELO3C026781.2' => 'cme', 'Migut.D00390' => 'egut', 'Migut.G00435' => 'egut', 'Migut.G00436' => 'egut', 'Migut.G00718' => 'egut', 'MSTRG.21891' => 'ama', 'MSTRG.26910' => 'ama', 'MSTRG.4099' => 'ama', 'MSTRG.9925' => 'ama', 'Nitab4.5_0000165g0010' => 'nta', 'Nitab4.5_0000209g0180' => 'nta', 'Nitab4.5_0000244g0440' => 'nta', 'Nitab4.5_0000525g0220' => 'nta', 'Nitab4.5_0001597g0020' => 'nta', 'Nitab4.5_0001878g0040' => 'nta', 'Nitab4.5_0001878g0060' => 'nta', 'Nitab4.5_0002838g0100' => 'nta', 'Nitab4.5_0002838g0120' => 'nta', 'Nitab4.5_0004798g0030' => 'nta', 'Nitab4.5_0005420g0010' => 'nta', 'Nitab4.5_0005507g0010' => 'nta', 'Nitab4.5_0005574g0020' => 'nta', 'Nitab4.5_0005838g0010' => 'nta', 'Nitab4.5_0010580g0020' => 'nta', 'Nn1g02599' => 'nnu', 'Nn1g02608' => 'nnu', 'Nn3g17742' => 'nnu', 'Nn3g19534' => 'nnu', 'Nn3g19535' => 'nnu', 'Oeu008790.1' => 'oeu', 'Oeu008792.1' => 'oeu', 'Oeu032590.1' => 'oeu', 'Oeu035349.1' => 'oeu', 'Oeu049791.1' => 'oeu', 'Os01g0774500' => 'osa', 'Os03g0628800' => 'osa', 'Os03g0798600' => 'osa', 'Os05g0508800' => 'osa', 'Peaxi162Scf00036g02018' => 'pax', 'Peaxi162Scf00578g00032' => 'pax', 'Peaxi162Scf00578g00317' => 'pax', 'Peaxi162Scf00785g00114' => 'pax', 'Peaxi162Scf00813g00119' => 'pax', 'Peaxi162Scf00906g00227' => 'pax', 'PGR004G0875' => 'pgr', 'PGR004G2424' => 'pgr', 'PGR031G1239' => 'pgr', 'PGR031G2474' => 'pgr', 'PGR044G0423' => 'pgr', 'PGSC0003DMG400001128' => 'stu', 'PGSC0003DMG400007336' => 'stu', 'PGSC0003DMG400016318' => 'stu', 'PGSC0003DMG400016319' => 'stu', 'PGSC0003DMG400018074' => 'stu', 'Phvul.001G157700' => 'pvu', 'Phvul.002G148550' => 'pvu', 'Phvul.002G320200' => 'pvu', 'Phvul.003G089200' => 'pvu', 'Phvul.007G126000' => 'pvu', 'Phvul.007G126100' => 'pvu', 'Phvul.007G178000' => 'pvu', 'Phvul.007G178200' => 'pvu', 'Potri.002G043000' => 'ptr', 'Potri.002G043200' => 'ptr', 'Potri.003G123750' => 'ptr', 'Potri.005G055401' => 'ptr', 'Potri.005G219700' => 'ptr', 'Potri.005G220000' => 'ptr', 'Potri.008G161901' => 'ptr', 'Potri.008G162000' => 'ptr', 'Potri.008G162400' => 'ptr', 'Potri.010G076900' => 'ptr', 'Pp3c12_9180' => 'ppa', 'Pp3c13_19770' => 'ppa', 'Pp3c14_22950' => 'ppa', 'Pp3c16_12160' => 'ppa', 'Pp3c27_7820' => 'ppa', 'Pp3c2_3490' => 'ppa', 'Pp3c3_23700' => 'ppa', 'Pp3c3_36520' => 'ppa', 'Pp3c4_15250' => 'ppa', 'PRCOL_00007002' => 'pco', 'Prupe.1G030600' => 'ppe', 'Prupe.1G030700' => 'ppe', 'Prupe.6G345200' => 'ppe', 'Prupe.8G230300' => 'ppe', 'Prupe.8G230500' => 'ppe', 'Psat3g059600' => 'psa', 'Psat5g200920' => 'psa', 'Psat6g056440' => 'psa', 'Psat6g057360' => 'psa', 'Psat6g134120' => 'psa', 'Psat6g134160' => 'psa', 'Psat7g008640' => 'psa', 'Psat7g185240' => 'psa', 'PSO017G1330' => 'pso', 'PSO063G6097' => 'pso', 'PSO170G0835' => 'pso', 'PSO170G2499' => 'pso', 'PSO210G5058' => 'pso', 'PSO210G6154' => 'pso', 'PSO585G0031' => 'pso', 'PSO832G0264' => 'pso', 'PSO832G4288' => 'pso', 'QL03p027355' => 'qlo', 'QL03p027430' => 'qlo', 'QL04p081380' => 'qlo', 'QL06p015642' => 'qlo', 'QL06p015650' => 'qlo', 'QL06p015686' => 'qlo', 'QL12p042927' => 'qlo', 'QL93p1863_0035' => 'qlo', 'RcHm_v2.0_Chr3g0450581' => 'rch', 'RcHm_v2.0_Chr4g0390371' => 'rch', 'RcHm_v2.0_Chr4g0390381' => 'rch', 'RcHm_v2.0_Chr4g0390491' => 'rch', 'RcHm_v2.0_Chr4g0390501' => 'rch', 'RcHm_v2.0_Chr6g0289231' => 'rch', 'Rhsim04G0190400' => 'rsi', 'Rhsim04G0190500' => 'rsi', 'Rhsim04G0190600' => 'rsi', 'Rhsim13G0031400' => 'rsi', 'Rhsim13G0165600' => 'rsi', 'RhsimUnG0114600' => 'rsi', 'RhsimUnG0114700' => 'rsi', 'Sabra02G0034800' => 'sbr', 'Sabra02G0035100' => 'sbr', 'Sabra05G0168600' => 'sbr', 'Sabra05G0168800' => 'sbr', 'Sabra08G0123700' => 'sbr', 'Sabra10G0031900' => 'sbr', 'Sabra13G0039000' => 'sbr', 'SalBow2G0782' => 'sbo', 'SalBow2G1403' => 'sbo', 'SalBow4G0074' => 'sbo', 'SalBow4G2635' => 'sbo', 'SalBow5G3010' => 'sbo', 'Sc05g0000870' => 'sci', 'Sc05g0000890' => 'sci', 'Sc13g0005000' => 'sci', 'Sc13g0005030' => 'sci', 'Sc19g0003790' => 'sci', 'Sc19g0003800' => 'sci', 'Sed0003467' => 'sed', 'Sed0009355' => 'sed', 'Sed0009894' => 'sed', 'Sed0011972' => 'sed', 'Sed0021483' => 'sed', 'Sed0021750' => 'sed', 'Sed0026279' => 'sed', 'SEGI_05312' => 'sgi', 'SEGI_10112' => 'sgi', 'SEGI_15835' => 'sgi', 'SEGI_30386' => 'sgi', 'SEGI_34122' => 'sgi', 'SEGI_35063' => 'sgi', 'SGA_v2.0_scaffold101G29794' => 'sas', 'SGA_v2.0_scaffold1G00573' => 'sas', 'SGA_v2.0_scaffold79G25637' => 'sas', 'SGA_v2.0_scaffold88G27283' => 'sas', 'SGA_v2.0_scaffold88G27285' => 'sas', 'SGA_v2.0_scaffold88G27331' => 'sas', 'SHI09937' => 'shi', 'SMO119G0302' => 'smo', 'SMO137G0231' => 'smo', 'SMO367G1151' => 'smo', 'Solyc02g082000.3' => 'sly', 'Solyc06g031670.3' => 'sly', 'Solyc06g053810.3' => 'sly', 'Solyc07g025457.1' => 'sly', 'Solyc08g059740.1' => 'sly', 'Solyc08g059750.3' => 'sly', 'Solyc09g083370.3' => 'sly', 'Solyc12g038950.3' => 'sly', 'Sopen02g026630' => 'spe', 'Sopen06g018930' => 'spe', 'Sopen06g018940' => 'spe', 'Sopen08g009460' => 'spe', 'Sopen09g032290' => 'spe', 'Sp1g03080' => 'spa', 'Sp1g03090' => 'spa', 'Sp1g05480' => 'spa', 'Sp2g07860' => 'spa', 'Sp2g08430' => 'spa', 'Sp2g08440' => 'spa', 'Sp2g26200' => 'spa', 'Sp4g13170' => 'spa', 'Sp6g33840' => 'spa', 'SpUn1204_0010' => 'spa', 'TAR365G0908' => 'tar', 'TAR381G1270' => 'tar', 'TAR381G1651' => 'tar', 'TAR625G1131' => 'tar', 'TAR633G0962' => 'tar', 'TAR633G1729' => 'tar', 'TAR633G1864' => 'tar', 'TAR636G0221' => 'tar', 'TAR636G0314' => 'tar', 'TAR636G3202' => 'tar', 'THA.LOC104800805' => 'tha', 'THA.LOC104801096' => 'tha', 'THA.LOC104801555' => 'tha', 'THA.LOC104808491' => 'tha', 'THA.LOC104808595' => 'tha', 'THA.LOC104815985' => 'tha', 'THA.LOC104822250' => 'tha', 'THA.LOC104826071' => 'tha', 'Thecc.01G265200' => 'tca', 'Thecc.01G265300' => 'tca', 'Thecc.01G265700' => 'tca', 'Thecc.03G109100' => 'tca', 'Thecc.04G245900' => 'tca', 'Thecc.04G246000' => 'tca', 'Thhalv10003334m.g' => 'esa', 'Thhalv10005508m.g' => 'esa', 'Thhalv10005643m.g' => 'esa', 'Thhalv10007316m.g' => 'esa', 'Thhalv10009006m.g' => 'esa', 'Thhalv10009309m.g' => 'esa', 'Thhalv10014917m.g' => 'esa', 'Thhalv10014919m.g' => 'esa', 'Thhalv10015393m.g' => 'esa', 'Thhalv10016515m.g' => 'esa', 'Thhalv10029242m.g' => 'esa', 'TPR.G16654' => 'tpr', 'TPR.G20589' => 'tpr', 'TPR.G23029' => 'tpr', 'TPR.G27731' => 'tpr', 'TPR.G28889' => 'tpr', 'TPR.G28899' => 'tpr', 'TPR.G30846' => 'tpr', 'TPR.G5452' => 'tpr', 'TPR.G5713' => 'tpr', 'TPR.G9046' => 'tpr', 'TPR.G9061' => 'tpr', 'TWI09G1075' => 'twi', 'TWI12G0806' => 'twi', 'TWI18G0108' => 'twi', 'TWI53G1361' => 'twi', 'TWI73G0185' => 'twi', 'TWI73G0427' => 'twi', 'unitig_37.g12001' => 'ugi', 'unitig_747.g21660' => 'ugi', 'unitig_748.g7232' => 'ugi', 'unitig_748.g7315' => 'ugi', 'unitig_85.g27262' => 'ugi', 'unitig_92.g28220' => 'ugi', 'vmacro02632' => 'vma', 'vmacro08410' => 'vma', 'vmacro08411' => 'vma', 'vmacro15407' => 'vma', 'VMungo0251G3619' => 'vmu', 'VMungo0720G1204' => 'vmu', 'VMungo0720G1918' => 'vmu', 'VMungo0720G2387' => 'vmu', 'VMungo0720G2961' => 'vmu', 'VMungo1215G2154' => 'vmu', 'VMungo1383G2411' => 'vmu', 'Zm00001eb051130' => 'zma', 'Zm00001eb116830' => 'zma', 'Zm00001eb116850' => 'zma', 'Zm00001eb151740' => 'zma', 'Zm00001eb292360' => 'zma', 'Zm00001eb301640' => 'zma' ), 'gf_id' => 'HOM05D000856', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000856' ), 'data_identifier' => 'HOM05D000856', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000856', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p00010' => 'bna', 'A03p04160' => 'bna', 'A03p17160' => 'bna', 'A04p23370' => 'bna', 'A05p14860' => 'bna', 'A08p37020' => 'bna', 'A09p08050' => 'bna', 'A09p66800' => 'bna', 'A09p67940' => 'bna', 'A10p02680' => 'bna', 'A10p05320' => 'bna', 'Aa31LG1G20560' => 'aar', 'Aa31LG1G20610' => 'aar', 'Aa31LG1G7810' => 'aar', 'Aa31LG5G3590' => 'aar', 'Aa31LG5G6140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3819' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4683' => 'aag', 'Actinidia04480' => 'ach', 'Actinidia05466' => 'ach', 'Actinidia08445' => 'ach', 'Actinidia21170' => 'ach', 'Actinidia24812' => 'ach', 'Actinidia24951' => 'ach', 'Actinidia40088' => 'ach', 'Ah.02g111660' => 'amhyb', 'Ah.11g048900' => 'amhyb', 'Ah.11g049910' => 'amhyb', 'AL1G13870' => 'aly', 'AL1G13880' => 'aly', 'AL1G16760' => 'aly', 'AL390U10020' => 'aly', 'AL4G25520' => 'aly', 'AL6G19890' => 'aly', 'AL6G19900' => 'aly', 'AL6G19910' => 'aly', 'AL8G40100' => 'aly', 'Aqoxy2G03562' => 'aox', 'Aqoxy5G00316' => 'aox', 'Aqoxy5G00926' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1628KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1H403S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2FU6SJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.882I6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8YRY2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YN1SN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AF70II' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZA8L1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F916KL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHRD8H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KTZ8QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S22EMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8M29T' => 'arhy', 'AT1G04270' => 'ath', 'AT1G04280' => 'ath', 'AT1G06750' => 'ath', 'AT1G33850' => 'ath', 'AT2G30630' => 'ath', 'AT5G09490' => 'ath', 'AT5G09500' => 'ath', 'AT5G09510' => 'ath', 'AT5G43640' => 'ath', 'AT5G63070' => 'ath', 'ATR0605G315' => 'atr', 'Atru.chr11.175' => 'acertr', 'Atru.chr11.653' => 'acertr', 'Atru.chr3.1616' => 'acertr', 'Atru.chr4.2230' => 'acertr', 'Atru.chr4.2232' => 'acertr', 'Atru.chr5.1598' => 'acertr', 'Atru.chr5.1600' => 'acertr', 'Atru.chr5.2188' => 'acertr', 'AUR62008326' => 'cqu', 'AUR62011922' => 'cqu', 'AUR62011924' => 'cqu', 'AUR62021771' => 'cqu', 'AUR62032237' => 'cqu', 'AUR62032240' => 'cqu', 'BcaB01g05572' => 'bca', 'BcaB02g10337' => 'bca', 'BcaB04g19944' => 'bca', 'BcaB05g21548' => 'bca', 'BcaB05g21549' => 'bca', 'BcaB05g23227' => 'bca', 'BcaB06g26256' => 'bca', 'BcaB06g26257' => 'bca', 'BcaB06g28379' => 'bca', 'BcaC02g11159' => 'bca', 'BcaC03g13258' => 'bca', 'BcaC03g13259' => 'bca', 'BcaC05g24456' => 'bca', 'BcaC05g24457' => 'bca', 'BcaC07g36922' => 'bca', 'BcaC07g36923' => 'bca', 'BcaC07g42050' => 'bca', 'BcaC07g42176' => 'bca', 'BcaC07g42195' => 'bca', 'BcaC07g42196' => 'bca', 'BcaNung06674' => 'bca', 'BolC2t06351H' => 'bol', 'BolC2t06352H' => 'bol', 'BolC3t12993H' => 'bol', 'BolC4t23525H' => 'bol', 'BolC4t27475H' => 'bol', 'BolC5t29025H' => 'bol', 'BolC5t29026H' => 'bol', 'BolC8t46898H' => 'bol', 'BolC8t46899H' => 'bol', 'BolC8t52630H' => 'bol', 'BolC8t52765H' => 'bol', 'BolC9t53824H' => 'bol', 'BraA03t09760Z' => 'bra', 'BraA03t10990Z' => 'bra', 'BraA05t20413Z' => 'bra', 'BraA08t35602Z' => 'bra', 'BraA09t36458Z' => 'bra', 'BraA09t42018Z' => 'bra', 'BraA09t42129Z' => 'bra', 'BraA10t42536Z' => 'bra', 'BraA10t42537Z' => 'bra', 'C01p10690' => 'bna', 'C02p03890' => 'bna', 'C02p03900' => 'bna', 'C03p04620' => 'bna', 'C04p19870' => 'bna', 'C04p59670' => 'bna', 'C05p02460' => 'bna', 'C05p02470' => 'bna', 'C08p00980' => 'bna', 'C08p00990' => 'bna', 'C08p51030' => 'bna', 'C08p52360' => 'bna', 'C09p09120' => 'bna', 'CAN.G19.15' => 'can', 'CAN.G251.10' => 'can', 'CAN.G251.9' => 'can', 'CAN.G398.24' => 'can', 'CAN.G410.32' => 'can', 'CAN.G881.2' => 'can', 'CANSAT01G3025' => 'cansat', 'CANSAT78G1211' => 'cansat', 'CANSAT78G1218' => 'cansat', 'CANSAT78G1521' => 'cansat', 'CANSAT78G1670' => 'cansat', 'CARHR003600' => 'chi', 'CARHR003610' => 'chi', 'CARHR006290' => 'chi', 'CARHR006430' => 'chi', 'CARHR124110' => 'chi', 'CARHR203870' => 'chi', 'CARHR203880' => 'chi', 'CARHR203890' => 'chi', 'CARHR276880' => 'chi', 'Carub.0001s0346' => 'cru', 'Carub.0001s0347' => 'cru', 'Carub.0001s0607' => 'cru', 'Carub.0003s2768' => 'cru', 'Carub.0003s2769' => 'cru', 'Carub.0004s1178' => 'cru', 'Carub.0006s0806' => 'cru', 'Carub.0006s0807' => 'cru', 'Carub.0006s0808' => 'cru', 'Carub.0008s0501' => 'cru', 'Carub.0008s2379' => 'cru', 'Ca_08655_v3' => 'car', 'Ca_08922_v3' => 'car', 'Ca_08923_v3' => 'car', 'Ca_09119_v3' => 'car', 'Ca_09703_v3' => 'car', 'Ca_09705_v3' => 'car', 'Ca_09835_v3' => 'car', 'Ca_26403_v3' => 'car', 'Ca_30719_v3' => 'car', 'CBR_g17958' => 'cbr', 'CBR_g40516' => 'cbr', 'Cc00_g05350' => 'ccan', 'Cc01_g18690' => 'ccan', 'Cc03_g04830' => 'ccan', 'Cc03_g04850' => 'ccan', 'CDE02G4469' => 'cde', 'CDE06G0883' => 'cde', 'CDE06G1295' => 'cde', 'CDE06G1390' => 'cde', 'CDE07G0584' => 'cde', 'CDE07G1084' => 'cde', 'CDE08G1259' => 'cde', 'Cfa002341' => 'cfa', 'Cfa024337' => 'cfa', 'Ciclev10004749m.g' => 'ccl', 'Ciclev10006127m.g' => 'ccl', 'Ciclev10019720m.g' => 'ccl', 'Ciclev10022652m.g' => 'ccl', 'CiPaw.01G190400' => 'cil', 'CiPaw.01G190500' => 'cil', 'CiPaw.02G116400' => 'cil', 'CiPaw.02G116500' => 'cil', 'CiPaw.04G183000' => 'cil', 'CiPaw.04G183300' => 'cil', 'ClCG05G004610' => 'cla', 'ClCG05G004620' => 'cla', 'ClCG06G006730' => 'cla', 'ClCG06G006740' => 'cla', 'ClCG11G003690' => 'cla', 'COL.COLO4_08276' => 'col', 'COL.COLO4_08277' => 'col', 'COL.COLO4_15787' => 'col', 'COL.COLO4_15789' => 'col', 'Cpa.g.c44815' => 'cpa', 'Cpa.g.sc52.144' => 'cpa', 'Cpa.g.sc58.46' => 'cpa', 'Cpa.g.sc58.47' => 'cpa', 'Cre08.g360900' => 'cre', 'CsaV3_2G013030' => 'csa', 'CsaV3_2G013050' => 'csa', 'CsaV3_2G015620' => 'csa', 'CsaV3_3G012590' => 'csa', 'CsaV3_3G012600' => 'csa', 'CSS0001641' => 'camsi', 'CSS0008310' => 'camsi', 'CSS0013011' => 'camsi', 'CSS0017147' => 'camsi', 'CSS0022970' => 'camsi', 'CSS0025655' => 'camsi', 'CSS0028665' => 'camsi', 'CSS0029117' => 'camsi', 'CSS0032024' => 'camsi', 'CSS0039681' => 'camsi', 'CSS0046516' => 'camsi', 'CSS0050307' => 'camsi', 'DCAR_005871' => 'dca', 'DCAR_007342' => 'dca', 'DCAR_024228' => 'dca', 'DCAR_027277' => 'dca', 'DCAR_030718' => 'dca', 'Dinv20287' => 'din', 'Dinv22461' => 'din', 'Dinv22464' => 'din', 'Dinv29912' => 'din', 'Dinv29913' => 'din', 'Dinv34580' => 'din', 'Dinv34582' => 'din', 'Dinv44632' => 'din', 'Duzib052G0266' => 'dzi', 'Duzib133G0907' => 'dzi', 'Duzib133G1034' => 'dzi', 'Duzib138G0207' => 'dzi', 'Duzib138G0491' => 'dzi', 'Duzib151G0812' => 'dzi', 'Duzib151G1166' => 'dzi', 'Duzib168G0192' => 'dzi', 'Duzib211G0077' => 'dzi', 'Duzib212G0429' => 'dzi', 'Duzib212G0472' => 'dzi', 'ECA233G2617' => 'eca', 'ECA236G4188' => 'eca', 'ECA240G0936' => 'eca', 'ECA240G1129' => 'eca', 'ECA247G0623' => 'eca', 'EL10Ac5g10451' => 'bvu', 'EL10Ac5g10453' => 'bvu', 'EL10Ac5g10894' => 'bvu', 'Eucgr.H00192' => 'egr', 'Eucgr.H00193' => 'egr', 'Eucgr.H00194' => 'egr', 'Eucgr.J01562' => 'egr', 'Eucgr.K03301' => 'egr', 'FAN02G0632' => 'fan', 'FAN05G5378' => 'fan', 'FAN09G3247' => 'fan', 'FAN12G0435' => 'fan', 'FAN12G2426' => 'fan', 'FAN14G1707' => 'fan', 'FAN14G4725' => 'fan', 'FAN15G2071' => 'fan', 'FAN17G3065' => 'fan', 'FAN19G1376' => 'fan', 'FAN20G0354' => 'fan', 'FAN20G2429' => 'fan', 'FAN20G2658' => 'fan', 'FAN24G2343' => 'fan', 'FAN27G2362' => 'fan', 'FAN28G1765' => 'fan', 'FvH4_1g16020' => 'fve', 'FvH4_2g04890' => 'fve', 'FvH4_2g22270' => 'fve', 'FvH4_4g02630' => 'fve', 'FvH4_4g02640' => 'fve', 'FvH4_6g02650' => 'fve', 'Glyma.02G140600' => 'gma', 'Glyma.03G159900' => 'gma', 'Glyma.05G234800' => 'gma', 'Glyma.07G269600' => 'gma', 'Glyma.08G042300' => 'gma', 'Glyma.10G033500' => 'gma', 'Glyma.10G185200' => 'gma', 'Glyma.17G004300' => 'gma', 'Glyma.19G161900' => 'gma', 'Glyma.20G205100' => 'gma', 'Glyma.20G205200' => 'gma', 'Gohir.A01G139101' => 'ghi', 'Gohir.A02G035600' => 'ghi', 'Gohir.A02G117901' => 'ghi', 'Gohir.A07G210100' => 'ghi', 'Gohir.A07G210200' => 'ghi', 'Gohir.A08G061100' => 'ghi', 'Gohir.A09G223000' => 'ghi', 'Gohir.A09G223100' => 'ghi', 'Gohir.A10G113900' => 'ghi', 'Gohir.A10G114000' => 'ghi', 'Gohir.D02G042300' => 'ghi', 'Gohir.D07G216100' => 'ghi', 'Gohir.D07G216200' => 'ghi', 'Gohir.D08G070400' => 'ghi', 'Gohir.D09G225000' => 'ghi', 'Gohir.D09G225100' => 'ghi', 'Gohir.D10G152300' => 'ghi', 'Gohir.D10G153200' => 'ghi', 'Gohir.D11G133701' => 'ghi', 'Gorai.004G074100' => 'gra', 'Gorai.005G046800' => 'gra', 'Gorai.006G246500' => 'gra', 'Gorai.006G246600' => 'gra', 'Gorai.007G142900' => 'gra', 'Gorai.011G171000' => 'gra', 'Gorai.011G171100' => 'gra', 'Gorai.013G104300' => 'gra', 'Gorai.013G104400' => 'gra', 'GSVIVG01000754001' => 'vvi', 'GSVIVG01000756001' => 'vvi', 'GSVIVG01010903001' => 'vvi', 'GSVIVG01017623001' => 'vvi', 'GSVIVG01018113001' => 'vvi', 'GSVIVG01018116001' => 'vvi', 'GSVIVG01018118001' => 'vvi', 'HanXRQChr03g0076211' => 'han', 'HanXRQChr03g0092431' => 'han', 'HanXRQChr03g0092441' => 'han', 'HanXRQChr03g0092591' => 'han', 'HanXRQChr03g0092671' => 'han', 'HanXRQChr03g0092681' => 'han', 'HanXRQChr03g0092691' => 'han', 'HanXRQChr03g0092701' => 'han', 'HanXRQChr03g0092721' => 'han', 'HanXRQChr03g0092731' => 'han', 'HanXRQChr04g0113681' => 'han', 'HanXRQChr10g0281371' => 'han', 'HanXRQChr11g0337141' => 'han', 'HanXRQChr13g0424521' => 'han', 'HanXRQChr13g0424531' => 'han', 'HanXRQChr13g0424541' => 'han', 'HanXRQChr16g0498221' => 'han', 'Haze_04377' => 'cav', 'Haze_11298' => 'cav', 'Haze_24547' => 'cav', 'Haze_24550' => 'cav', 'Haze_26587' => 'cav', 'Hma1.2p1_0650F.1_g195410' => 'hma', 'Hma1.2p1_0893F.1_g233470' => 'hma', 'HPP92_006508' => 'vpl', 'HPP92_024780' => 'vpl', 'Hund02688' => 'sun', 'Hund09380' => 'sun', 'Hund09381' => 'sun', 'Hund09832' => 'sun', 'Hund09833' => 'sun', 'Hund11351' => 'sun', 'Hund11513' => 'sun', 'Lalb_Chr06g0162591' => 'lal', 'Lalb_Chr06g0162601' => 'lal', 'Lalb_Chr06g0169321' => 'lal', 'Lalb_Chr09g0330951' => 'lal', 'Lalb_Chr16g0387631' => 'lal', 'Lalb_Chr21g0306241' => 'lal', 'Lalb_Chr25g0290051' => 'lal', 'Lalb_Chr25g0290061' => 'lal', 'Lalb_Chr25g0290071' => 'lal', 'Lj1g0003876' => 'lja', 'Lj1P1207T36' => 'lonja', 'Lj2C1156G12' => 'lonja', 'Lj3A793G39' => 'lonja', 'Lj3C580G2' => 'lonja', 'Lj3C780G2' => 'lonja', 'Lj3C780T4' => 'lonja', 'Lj3C793G9' => 'lonja', 'Lj4g0012960' => 'lja', 'Lj5g0021252' => 'lja', 'Lj5g0021484' => 'lja', 'Lj5g0024528' => 'lja', 'Lj6A399T12' => 'lonja', 'Lj6A656G65' => 'lonja', 'Lsat_1_v5_gn_3_125500' => 'lsa', 'Lsat_1_v5_gn_3_125540' => 'lsa', 'Lsat_1_v5_gn_5_72701' => 'lsa', 'Lsat_1_v5_gn_8_91560' => 'lsa', 'Lsat_1_v5_gn_9_9640' => 'lsa', 'Manes.01G200600' => 'mes', 'Manes.01G200700' => 'mes', 'Manes.03G168900' => 'mes', 'Manes.03G169000' => 'mes', 'Manes.05G085801' => 'mes', 'Manes.05G086200' => 'mes', 'Manes.15G036700' => 'mes', 'Manes.15G036900' => 'mes', 'Mapoly0004s0172' => 'mpo', 'Mapoly0023s0001' => 'mpo', 'Mapoly0142s0012' => 'mpo', 'MBI01_g32854_MAGBIO' => 'mbi', 'MBI11_g24427_MAGBIO' => 'mbi', 'MBI11_g47319_MAGBIO' => 'mbi', 'MCO01G433' => 'mco', 'MD00G1187800' => 'mdo', 'MD04G1226500' => 'mdo', 'MD05G1203900' => 'mdo', 'MD10G1191100' => 'mdo', 'MD12G1243500' => 'mdo', 'MD13G1207000' => 'mdo', 'MD13G1207100' => 'mdo', 'MD16G1208600' => 'mdo', 'Medtr1g050352' => 'mtr', 'Medtr1g070385' => 'mtr', 'Medtr1g070450' => 'mtr', 'Medtr1g075200' => 'mtr', 'Medtr1g075250' => 'mtr', 'Medtr1g075260' => 'mtr', 'Medtr1g475250' => 'mtr', 'Medtr4g075450' => 'mtr', 'Medtr7g096300' => 'mtr', 'Medtr8g105110' => 'mtr', 'MELO3C006470.2' => 'cme', 'MELO3C006471.2' => 'cme', 'MELO3C020772.2' => 'cme', 'MELO3C026780.2' => 'cme', 'MELO3C026781.2' => 'cme', 'Migut.D00390' => 'egut', 'Migut.G00435' => 'egut', 'Migut.G00436' => 'egut', 'Migut.G00718' => 'egut', 'MSTRG.21891' => 'ama', 'MSTRG.26910' => 'ama', 'MSTRG.4099' => 'ama', 'MSTRG.9925' => 'ama', 'Nitab4.5_0000165g0010' => 'nta', 'Nitab4.5_0000209g0180' => 'nta', 'Nitab4.5_0000244g0440' => 'nta', 'Nitab4.5_0000525g0220' => 'nta', 'Nitab4.5_0001597g0020' => 'nta', 'Nitab4.5_0001878g0040' => 'nta', 'Nitab4.5_0001878g0060' => 'nta', 'Nitab4.5_0002838g0100' => 'nta', 'Nitab4.5_0002838g0120' => 'nta', 'Nitab4.5_0004798g0030' => 'nta', 'Nitab4.5_0005420g0010' => 'nta', 'Nitab4.5_0005507g0010' => 'nta', 'Nitab4.5_0005574g0020' => 'nta', 'Nitab4.5_0005838g0010' => 'nta', 'Nitab4.5_0010580g0020' => 'nta', 'Nn1g02599' => 'nnu', 'Nn1g02608' => 'nnu', 'Nn3g17742' => 'nnu', 'Nn3g19534' => 'nnu', 'Nn3g19535' => 'nnu', 'Oeu008790.1' => 'oeu', 'Oeu008792.1' => 'oeu', 'Oeu032590.1' => 'oeu', 'Oeu035349.1' => 'oeu', 'Oeu049791.1' => 'oeu', 'Os01g0774500' => 'osa', 'Os03g0628800' => 'osa', 'Os03g0798600' => 'osa', 'Os05g0508800' => 'osa', 'Peaxi162Scf00036g02018' => 'pax', 'Peaxi162Scf00578g00032' => 'pax', 'Peaxi162Scf00578g00317' => 'pax', 'Peaxi162Scf00785g00114' => 'pax', 'Peaxi162Scf00813g00119' => 'pax', 'Peaxi162Scf00906g00227' => 'pax', 'PGR004G0875' => 'pgr', 'PGR004G2424' => 'pgr', 'PGR031G1239' => 'pgr', 'PGR031G2474' => 'pgr', 'PGR044G0423' => 'pgr', 'PGSC0003DMG400001128' => 'stu', 'PGSC0003DMG400007336' => 'stu', 'PGSC0003DMG400016318' => 'stu', 'PGSC0003DMG400016319' => 'stu', 'PGSC0003DMG400018074' => 'stu', 'Phvul.001G157700' => 'pvu', 'Phvul.002G148550' => 'pvu', 'Phvul.002G320200' => 'pvu', 'Phvul.003G089200' => 'pvu', 'Phvul.007G126000' => 'pvu', 'Phvul.007G126100' => 'pvu', 'Phvul.007G178000' => 'pvu', 'Phvul.007G178200' => 'pvu', 'Potri.002G043000' => 'ptr', 'Potri.002G043200' => 'ptr', 'Potri.003G123750' => 'ptr', 'Potri.005G055401' => 'ptr', 'Potri.005G219700' => 'ptr', 'Potri.005G220000' => 'ptr', 'Potri.008G161901' => 'ptr', 'Potri.008G162000' => 'ptr', 'Potri.008G162400' => 'ptr', 'Potri.010G076900' => 'ptr', 'Pp3c12_9180' => 'ppa', 'Pp3c13_19770' => 'ppa', 'Pp3c14_22950' => 'ppa', 'Pp3c16_12160' => 'ppa', 'Pp3c27_7820' => 'ppa', 'Pp3c2_3490' => 'ppa', 'Pp3c3_23700' => 'ppa', 'Pp3c3_36520' => 'ppa', 'Pp3c4_15250' => 'ppa', 'PRCOL_00007002' => 'pco', 'Prupe.1G030600' => 'ppe', 'Prupe.1G030700' => 'ppe', 'Prupe.6G345200' => 'ppe', 'Prupe.8G230300' => 'ppe', 'Prupe.8G230500' => 'ppe', 'Psat3g059600' => 'psa', 'Psat5g200920' => 'psa', 'Psat6g056440' => 'psa', 'Psat6g057360' => 'psa', 'Psat6g134120' => 'psa', 'Psat6g134160' => 'psa', 'Psat7g008640' => 'psa', 'Psat7g185240' => 'psa', 'PSO017G1330' => 'pso', 'PSO063G6097' => 'pso', 'PSO170G0835' => 'pso', 'PSO170G2499' => 'pso', 'PSO210G5058' => 'pso', 'PSO210G6154' => 'pso', 'PSO585G0031' => 'pso', 'PSO832G0264' => 'pso', 'PSO832G4288' => 'pso', 'QL03p027355' => 'qlo', 'QL03p027430' => 'qlo', 'QL04p081380' => 'qlo', 'QL06p015642' => 'qlo', 'QL06p015650' => 'qlo', 'QL06p015686' => 'qlo', 'QL12p042927' => 'qlo', 'QL93p1863_0035' => 'qlo', 'RcHm_v2.0_Chr3g0450581' => 'rch', 'RcHm_v2.0_Chr4g0390371' => 'rch', 'RcHm_v2.0_Chr4g0390381' => 'rch', 'RcHm_v2.0_Chr4g0390491' => 'rch', 'RcHm_v2.0_Chr4g0390501' => 'rch', 'RcHm_v2.0_Chr6g0289231' => 'rch', 'Rhsim04G0190400' => 'rsi', 'Rhsim04G0190500' => 'rsi', 'Rhsim04G0190600' => 'rsi', 'Rhsim13G0031400' => 'rsi', 'Rhsim13G0165600' => 'rsi', 'RhsimUnG0114600' => 'rsi', 'RhsimUnG0114700' => 'rsi', 'Sabra02G0034800' => 'sbr', 'Sabra02G0035100' => 'sbr', 'Sabra05G0168600' => 'sbr', 'Sabra05G0168800' => 'sbr', 'Sabra08G0123700' => 'sbr', 'Sabra10G0031900' => 'sbr', 'Sabra13G0039000' => 'sbr', 'SalBow2G0782' => 'sbo', 'SalBow2G1403' => 'sbo', 'SalBow4G0074' => 'sbo', 'SalBow4G2635' => 'sbo', 'SalBow5G3010' => 'sbo', 'Sc05g0000870' => 'sci', 'Sc05g0000890' => 'sci', 'Sc13g0005000' => 'sci', 'Sc13g0005030' => 'sci', 'Sc19g0003790' => 'sci', 'Sc19g0003800' => 'sci', 'Sed0003467' => 'sed', 'Sed0009355' => 'sed', 'Sed0009894' => 'sed', 'Sed0011972' => 'sed', 'Sed0021483' => 'sed', 'Sed0021750' => 'sed', 'Sed0026279' => 'sed', 'SEGI_05312' => 'sgi', 'SEGI_10112' => 'sgi', 'SEGI_15835' => 'sgi', 'SEGI_30386' => 'sgi', 'SEGI_34122' => 'sgi', 'SEGI_35063' => 'sgi', 'SGA_v2.0_scaffold101G29794' => 'sas', 'SGA_v2.0_scaffold1G00573' => 'sas', 'SGA_v2.0_scaffold79G25637' => 'sas', 'SGA_v2.0_scaffold88G27283' => 'sas', 'SGA_v2.0_scaffold88G27285' => 'sas', 'SGA_v2.0_scaffold88G27331' => 'sas', 'SHI09937' => 'shi', 'SMO119G0302' => 'smo', 'SMO137G0231' => 'smo', 'SMO367G1151' => 'smo', 'Solyc02g082000.3' => 'sly', 'Solyc06g031670.3' => 'sly', 'Solyc06g053810.3' => 'sly', 'Solyc07g025457.1' => 'sly', 'Solyc08g059740.1' => 'sly', 'Solyc08g059750.3' => 'sly', 'Solyc09g083370.3' => 'sly', 'Solyc12g038950.3' => 'sly', 'Sopen02g026630' => 'spe', 'Sopen06g018930' => 'spe', 'Sopen06g018940' => 'spe', 'Sopen08g009460' => 'spe', 'Sopen09g032290' => 'spe', 'Sp1g03080' => 'spa', 'Sp1g03090' => 'spa', 'Sp1g05480' => 'spa', 'Sp2g07860' => 'spa', 'Sp2g08430' => 'spa', 'Sp2g08440' => 'spa', 'Sp2g26200' => 'spa', 'Sp4g13170' => 'spa', 'Sp6g33840' => 'spa', 'SpUn1204_0010' => 'spa', 'TAR365G0908' => 'tar', 'TAR381G1270' => 'tar', 'TAR381G1651' => 'tar', 'TAR625G1131' => 'tar', 'TAR633G0962' => 'tar', 'TAR633G1729' => 'tar', 'TAR633G1864' => 'tar', 'TAR636G0221' => 'tar', 'TAR636G0314' => 'tar', 'TAR636G3202' => 'tar', 'THA.LOC104800805' => 'tha', 'THA.LOC104801096' => 'tha', 'THA.LOC104801555' => 'tha', 'THA.LOC104808491' => 'tha', 'THA.LOC104808595' => 'tha', 'THA.LOC104815985' => 'tha', 'THA.LOC104822250' => 'tha', 'THA.LOC104826071' => 'tha', 'Thecc.01G265200' => 'tca', 'Thecc.01G265300' => 'tca', 'Thecc.01G265700' => 'tca', 'Thecc.03G109100' => 'tca', 'Thecc.04G245900' => 'tca', 'Thecc.04G246000' => 'tca', 'Thhalv10003334m.g' => 'esa', 'Thhalv10005508m.g' => 'esa', 'Thhalv10005643m.g' => 'esa', 'Thhalv10007316m.g' => 'esa', 'Thhalv10009006m.g' => 'esa', 'Thhalv10009309m.g' => 'esa', 'Thhalv10014917m.g' => 'esa', 'Thhalv10014919m.g' => 'esa', 'Thhalv10015393m.g' => 'esa', 'Thhalv10016515m.g' => 'esa', 'Thhalv10029242m.g' => 'esa', 'TPR.G16654' => 'tpr', 'TPR.G20589' => 'tpr', 'TPR.G23029' => 'tpr', 'TPR.G27731' => 'tpr', 'TPR.G28889' => 'tpr', 'TPR.G28899' => 'tpr', 'TPR.G30846' => 'tpr', 'TPR.G5452' => 'tpr', 'TPR.G5713' => 'tpr', 'TPR.G9046' => 'tpr', 'TPR.G9061' => 'tpr', 'TWI09G1075' => 'twi', 'TWI12G0806' => 'twi', 'TWI18G0108' => 'twi', 'TWI53G1361' => 'twi', 'TWI73G0185' => 'twi', 'TWI73G0427' => 'twi', 'unitig_37.g12001' => 'ugi', 'unitig_747.g21660' => 'ugi', 'unitig_748.g7232' => 'ugi', 'unitig_748.g7315' => 'ugi', 'unitig_85.g27262' => 'ugi', 'unitig_92.g28220' => 'ugi', 'vmacro02632' => 'vma', 'vmacro08410' => 'vma', 'vmacro08411' => 'vma', 'vmacro15407' => 'vma', 'VMungo0251G3619' => 'vmu', 'VMungo0720G1204' => 'vmu', 'VMungo0720G1918' => 'vmu', 'VMungo0720G2387' => 'vmu', 'VMungo0720G2961' => 'vmu', 'VMungo1215G2154' => 'vmu', 'VMungo1383G2411' => 'vmu', 'Zm00001eb051130' => 'zma', 'Zm00001eb116830' => 'zma', 'Zm00001eb116850' => 'zma', 'Zm00001eb151740' => 'zma', 'Zm00001eb292360' => 'zma', 'Zm00001eb301640' => 'zma' ) $gf_id = 'HOM05D000856' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000856' ) $data_identifier = 'HOM05D000856' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 13, 'ath' => (int) 10, 'atr' => (int) 1, 'acertr' => (int) 8, 'cqu' => (int) 6, 'bca' => (int) 21, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 11, 'car' => (int) 9, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 8, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 5, 'fan' => (int) 16, 'fve' => (int) 6, 'gma' => (int) 11, 'ghi' => (int) 19, 'gra' => (int) 9, 'vvi' => (int) 7, 'han' => (int) 17, 'cav' => (int) 5, 'hma' => (int) 2, 'vpl' => (int) 2, 'sun' => (int) 7, 'lal' => (int) 9, 'lja' => (int) 5, 'lonja' => (int) 9, 'lsa' => (int) 5, 'mes' => (int) 8, 'mpo' => (int) 3, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 10, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 15, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 9, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 9, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 6, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 5, 'spa' => (int) 10, 'tar' => (int) 10, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 11, 'tpr' => (int) 11, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 4, 'vmu' => (int) 7, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb301640' $species_info = array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ) $local_species = 'csa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000856', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p00010' => 'bna', 'A03p04160' => 'bna', 'A03p17160' => 'bna', 'A04p23370' => 'bna', 'A05p14860' => 'bna', 'A08p37020' => 'bna', 'A09p08050' => 'bna', 'A09p66800' => 'bna', 'A09p67940' => 'bna', 'A10p02680' => 'bna', 'A10p05320' => 'bna', 'Aa31LG1G20560' => 'aar', 'Aa31LG1G20610' => 'aar', 'Aa31LG1G7810' => 'aar', 'Aa31LG5G3590' => 'aar', 'Aa31LG5G6140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3819' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4683' => 'aag', 'Actinidia04480' => 'ach', 'Actinidia05466' => 'ach', 'Actinidia08445' => 'ach', 'Actinidia21170' => 'ach', 'Actinidia24812' => 'ach', 'Actinidia24951' => 'ach', 'Actinidia40088' => 'ach', 'Ah.02g111660' => 'amhyb', 'Ah.11g048900' => 'amhyb', 'Ah.11g049910' => 'amhyb', 'AL1G13870' => 'aly', 'AL1G13880' => 'aly', 'AL1G16760' => 'aly', 'AL390U10020' => 'aly', 'AL4G25520' => 'aly', 'AL6G19890' => 'aly', 'AL6G19900' => 'aly', 'AL6G19910' => 'aly', 'AL8G40100' => 'aly', 'Aqoxy2G03562' => 'aox', 'Aqoxy5G00316' => 'aox', 'Aqoxy5G00926' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1628KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1H403S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2FU6SJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.882I6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8YRY2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YN1SN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AF70II' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZA8L1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F916KL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHRD8H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KTZ8QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S22EMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8M29T' => 'arhy', 'AT1G04270' => 'ath', 'AT1G04280' => 'ath', 'AT1G06750' => 'ath', 'AT1G33850' => 'ath', 'AT2G30630' => 'ath', 'AT5G09490' => 'ath', 'AT5G09500' => 'ath', 'AT5G09510' => 'ath', 'AT5G43640' => 'ath', 'AT5G63070' => 'ath', 'ATR0605G315' => 'atr', 'Atru.chr11.175' => 'acertr', 'Atru.chr11.653' => 'acertr', 'Atru.chr3.1616' => 'acertr', 'Atru.chr4.2230' => 'acertr', 'Atru.chr4.2232' => 'acertr', 'Atru.chr5.1598' => 'acertr', 'Atru.chr5.1600' => 'acertr', 'Atru.chr5.2188' => 'acertr', 'AUR62008326' => 'cqu', 'AUR62011922' => 'cqu', 'AUR62011924' => 'cqu', 'AUR62021771' => 'cqu', 'AUR62032237' => 'cqu', 'AUR62032240' => 'cqu', 'BcaB01g05572' => 'bca', 'BcaB02g10337' => 'bca', 'BcaB04g19944' => 'bca', 'BcaB05g21548' => 'bca', 'BcaB05g21549' => 'bca', 'BcaB05g23227' => 'bca', 'BcaB06g26256' => 'bca', 'BcaB06g26257' => 'bca', 'BcaB06g28379' => 'bca', 'BcaC02g11159' => 'bca', 'BcaC03g13258' => 'bca', 'BcaC03g13259' => 'bca', 'BcaC05g24456' => 'bca', 'BcaC05g24457' => 'bca', 'BcaC07g36922' => 'bca', 'BcaC07g36923' => 'bca', 'BcaC07g42050' => 'bca', 'BcaC07g42176' => 'bca', 'BcaC07g42195' => 'bca', 'BcaC07g42196' => 'bca', 'BcaNung06674' => 'bca', 'BolC2t06351H' => 'bol', 'BolC2t06352H' => 'bol', 'BolC3t12993H' => 'bol', 'BolC4t23525H' => 'bol', 'BolC4t27475H' => 'bol', 'BolC5t29025H' => 'bol', 'BolC5t29026H' => 'bol', 'BolC8t46898H' => 'bol', 'BolC8t46899H' => 'bol', 'BolC8t52630H' => 'bol', 'BolC8t52765H' => 'bol', 'BolC9t53824H' => 'bol', 'BraA03t09760Z' => 'bra', 'BraA03t10990Z' => 'bra', 'BraA05t20413Z' => 'bra', 'BraA08t35602Z' => 'bra', 'BraA09t36458Z' => 'bra', 'BraA09t42018Z' => 'bra', 'BraA09t42129Z' => 'bra', 'BraA10t42536Z' => 'bra', 'BraA10t42537Z' => 'bra', 'C01p10690' => 'bna', 'C02p03890' => 'bna', 'C02p03900' => 'bna', 'C03p04620' => 'bna', 'C04p19870' => 'bna', 'C04p59670' => 'bna', 'C05p02460' => 'bna', 'C05p02470' => 'bna', 'C08p00980' => 'bna', 'C08p00990' => 'bna', 'C08p51030' => 'bna', 'C08p52360' => 'bna', 'C09p09120' => 'bna', 'CAN.G19.15' => 'can', 'CAN.G251.10' => 'can', 'CAN.G251.9' => 'can', 'CAN.G398.24' => 'can', 'CAN.G410.32' => 'can', 'CAN.G881.2' => 'can', 'CANSAT01G3025' => 'cansat', 'CANSAT78G1211' => 'cansat', 'CANSAT78G1218' => 'cansat', 'CANSAT78G1521' => 'cansat', 'CANSAT78G1670' => 'cansat', 'CARHR003600' => 'chi', 'CARHR003610' => 'chi', 'CARHR006290' => 'chi', 'CARHR006430' => 'chi', 'CARHR124110' => 'chi', 'CARHR203870' => 'chi', 'CARHR203880' => 'chi', 'CARHR203890' => 'chi', 'CARHR276880' => 'chi', 'Carub.0001s0346' => 'cru', 'Carub.0001s0347' => 'cru', 'Carub.0001s0607' => 'cru', 'Carub.0003s2768' => 'cru', 'Carub.0003s2769' => 'cru', 'Carub.0004s1178' => 'cru', 'Carub.0006s0806' => 'cru', 'Carub.0006s0807' => 'cru', 'Carub.0006s0808' => 'cru', 'Carub.0008s0501' => 'cru', 'Carub.0008s2379' => 'cru', 'Ca_08655_v3' => 'car', 'Ca_08922_v3' => 'car', 'Ca_08923_v3' => 'car', 'Ca_09119_v3' => 'car', 'Ca_09703_v3' => 'car', 'Ca_09705_v3' => 'car', 'Ca_09835_v3' => 'car', 'Ca_26403_v3' => 'car', 'Ca_30719_v3' => 'car', 'CBR_g17958' => 'cbr', 'CBR_g40516' => 'cbr', 'Cc00_g05350' => 'ccan', 'Cc01_g18690' => 'ccan', 'Cc03_g04830' => 'ccan', 'Cc03_g04850' => 'ccan', 'CDE02G4469' => 'cde', 'CDE06G0883' => 'cde', 'CDE06G1295' => 'cde', 'CDE06G1390' => 'cde', 'CDE07G0584' => 'cde', 'CDE07G1084' => 'cde', 'CDE08G1259' => 'cde', 'Cfa002341' => 'cfa', 'Cfa024337' => 'cfa', 'Ciclev10004749m.g' => 'ccl', 'Ciclev10006127m.g' => 'ccl', 'Ciclev10019720m.g' => 'ccl', 'Ciclev10022652m.g' => 'ccl', 'CiPaw.01G190400' => 'cil', 'CiPaw.01G190500' => 'cil', 'CiPaw.02G116400' => 'cil', 'CiPaw.02G116500' => 'cil', 'CiPaw.04G183000' => 'cil', 'CiPaw.04G183300' => 'cil', 'ClCG05G004610' => 'cla', 'ClCG05G004620' => 'cla', 'ClCG06G006730' => 'cla', 'ClCG06G006740' => 'cla', 'ClCG11G003690' => 'cla', 'COL.COLO4_08276' => 'col', 'COL.COLO4_08277' => 'col', 'COL.COLO4_15787' => 'col', 'COL.COLO4_15789' => 'col', 'Cpa.g.c44815' => 'cpa', 'Cpa.g.sc52.144' => 'cpa', 'Cpa.g.sc58.46' => 'cpa', 'Cpa.g.sc58.47' => 'cpa', 'Cre08.g360900' => 'cre', 'CsaV3_2G013030' => 'csa', 'CsaV3_2G013050' => 'csa', 'CsaV3_2G015620' => 'csa', 'CsaV3_3G012590' => 'csa', 'CsaV3_3G012600' => 'csa', 'CSS0001641' => 'camsi', 'CSS0008310' => 'camsi', 'CSS0013011' => 'camsi', 'CSS0017147' => 'camsi', 'CSS0022970' => 'camsi', 'CSS0025655' => 'camsi', 'CSS0028665' => 'camsi', 'CSS0029117' => 'camsi', 'CSS0032024' => 'camsi', 'CSS0039681' => 'camsi', 'CSS0046516' => 'camsi', 'CSS0050307' => 'camsi', 'DCAR_005871' => 'dca', 'DCAR_007342' => 'dca', 'DCAR_024228' => 'dca', 'DCAR_027277' => 'dca', 'DCAR_030718' => 'dca', 'Dinv20287' => 'din', 'Dinv22461' => 'din', 'Dinv22464' => 'din', 'Dinv29912' => 'din', 'Dinv29913' => 'din', 'Dinv34580' => 'din', 'Dinv34582' => 'din', 'Dinv44632' => 'din', 'Duzib052G0266' => 'dzi', 'Duzib133G0907' => 'dzi', 'Duzib133G1034' => 'dzi', 'Duzib138G0207' => 'dzi', 'Duzib138G0491' => 'dzi', 'Duzib151G0812' => 'dzi', 'Duzib151G1166' => 'dzi', 'Duzib168G0192' => 'dzi', 'Duzib211G0077' => 'dzi', 'Duzib212G0429' => 'dzi', 'Duzib212G0472' => 'dzi', 'ECA233G2617' => 'eca', 'ECA236G4188' => 'eca', 'ECA240G0936' => 'eca', 'ECA240G1129' => 'eca', 'ECA247G0623' => 'eca', 'EL10Ac5g10451' => 'bvu', 'EL10Ac5g10453' => 'bvu', 'EL10Ac5g10894' => 'bvu', 'Eucgr.H00192' => 'egr', 'Eucgr.H00193' => 'egr', 'Eucgr.H00194' => 'egr', 'Eucgr.J01562' => 'egr', 'Eucgr.K03301' => 'egr', 'FAN02G0632' => 'fan', 'FAN05G5378' => 'fan', 'FAN09G3247' => 'fan', 'FAN12G0435' => 'fan', 'FAN12G2426' => 'fan', 'FAN14G1707' => 'fan', 'FAN14G4725' => 'fan', 'FAN15G2071' => 'fan', 'FAN17G3065' => 'fan', 'FAN19G1376' => 'fan', 'FAN20G0354' => 'fan', 'FAN20G2429' => 'fan', 'FAN20G2658' => 'fan', 'FAN24G2343' => 'fan', 'FAN27G2362' => 'fan', 'FAN28G1765' => 'fan', 'FvH4_1g16020' => 'fve', 'FvH4_2g04890' => 'fve', 'FvH4_2g22270' => 'fve', 'FvH4_4g02630' => 'fve', 'FvH4_4g02640' => 'fve', 'FvH4_6g02650' => 'fve', 'Glyma.02G140600' => 'gma', 'Glyma.03G159900' => 'gma', 'Glyma.05G234800' => 'gma', 'Glyma.07G269600' => 'gma', 'Glyma.08G042300' => 'gma', 'Glyma.10G033500' => 'gma', 'Glyma.10G185200' => 'gma', 'Glyma.17G004300' => 'gma', 'Glyma.19G161900' => 'gma', 'Glyma.20G205100' => 'gma', 'Glyma.20G205200' => 'gma', 'Gohir.A01G139101' => 'ghi', 'Gohir.A02G035600' => 'ghi', 'Gohir.A02G117901' => 'ghi', 'Gohir.A07G210100' => 'ghi', 'Gohir.A07G210200' => 'ghi', 'Gohir.A08G061100' => 'ghi', 'Gohir.A09G223000' => 'ghi', 'Gohir.A09G223100' => 'ghi', 'Gohir.A10G113900' => 'ghi', 'Gohir.A10G114000' => 'ghi', 'Gohir.D02G042300' => 'ghi', 'Gohir.D07G216100' => 'ghi', 'Gohir.D07G216200' => 'ghi', 'Gohir.D08G070400' => 'ghi', 'Gohir.D09G225000' => 'ghi', 'Gohir.D09G225100' => 'ghi', 'Gohir.D10G152300' => 'ghi', 'Gohir.D10G153200' => 'ghi', 'Gohir.D11G133701' => 'ghi', 'Gorai.004G074100' => 'gra', 'Gorai.005G046800' => 'gra', 'Gorai.006G246500' => 'gra', 'Gorai.006G246600' => 'gra', 'Gorai.007G142900' => 'gra', 'Gorai.011G171000' => 'gra', 'Gorai.011G171100' => 'gra', 'Gorai.013G104300' => 'gra', 'Gorai.013G104400' => 'gra', 'GSVIVG01000754001' => 'vvi', 'GSVIVG01000756001' => 'vvi', 'GSVIVG01010903001' => 'vvi', 'GSVIVG01017623001' => 'vvi', 'GSVIVG01018113001' => 'vvi', 'GSVIVG01018116001' => 'vvi', 'GSVIVG01018118001' => 'vvi', 'HanXRQChr03g0076211' => 'han', 'HanXRQChr03g0092431' => 'han', 'HanXRQChr03g0092441' => 'han', 'HanXRQChr03g0092591' => 'han', 'HanXRQChr03g0092671' => 'han', 'HanXRQChr03g0092681' => 'han', 'HanXRQChr03g0092691' => 'han', 'HanXRQChr03g0092701' => 'han', 'HanXRQChr03g0092721' => 'han', 'HanXRQChr03g0092731' => 'han', 'HanXRQChr04g0113681' => 'han', 'HanXRQChr10g0281371' => 'han', 'HanXRQChr11g0337141' => 'han', 'HanXRQChr13g0424521' => 'han', 'HanXRQChr13g0424531' => 'han', 'HanXRQChr13g0424541' => 'han', 'HanXRQChr16g0498221' => 'han', 'Haze_04377' => 'cav', 'Haze_11298' => 'cav', 'Haze_24547' => 'cav', 'Haze_24550' => 'cav', 'Haze_26587' => 'cav', 'Hma1.2p1_0650F.1_g195410' => 'hma', 'Hma1.2p1_0893F.1_g233470' => 'hma', 'HPP92_006508' => 'vpl', 'HPP92_024780' => 'vpl', 'Hund02688' => 'sun', 'Hund09380' => 'sun', 'Hund09381' => 'sun', 'Hund09832' => 'sun', 'Hund09833' => 'sun', 'Hund11351' => 'sun', 'Hund11513' => 'sun', 'Lalb_Chr06g0162591' => 'lal', 'Lalb_Chr06g0162601' => 'lal', 'Lalb_Chr06g0169321' => 'lal', 'Lalb_Chr09g0330951' => 'lal', 'Lalb_Chr16g0387631' => 'lal', 'Lalb_Chr21g0306241' => 'lal', 'Lalb_Chr25g0290051' => 'lal', 'Lalb_Chr25g0290061' => 'lal', 'Lalb_Chr25g0290071' => 'lal', 'Lj1g0003876' => 'lja', 'Lj1P1207T36' => 'lonja', 'Lj2C1156G12' => 'lonja', 'Lj3A793G39' => 'lonja', 'Lj3C580G2' => 'lonja', 'Lj3C780G2' => 'lonja', 'Lj3C780T4' => 'lonja', 'Lj3C793G9' => 'lonja', 'Lj4g0012960' => 'lja', 'Lj5g0021252' => 'lja', 'Lj5g0021484' => 'lja', 'Lj5g0024528' => 'lja', 'Lj6A399T12' => 'lonja', 'Lj6A656G65' => 'lonja', 'Lsat_1_v5_gn_3_125500' => 'lsa', 'Lsat_1_v5_gn_3_125540' => 'lsa', 'Lsat_1_v5_gn_5_72701' => 'lsa', 'Lsat_1_v5_gn_8_91560' => 'lsa', 'Lsat_1_v5_gn_9_9640' => 'lsa', 'Manes.01G200600' => 'mes', 'Manes.01G200700' => 'mes', 'Manes.03G168900' => 'mes', 'Manes.03G169000' => 'mes', 'Manes.05G085801' => 'mes', 'Manes.05G086200' => 'mes', 'Manes.15G036700' => 'mes', 'Manes.15G036900' => 'mes', 'Mapoly0004s0172' => 'mpo', 'Mapoly0023s0001' => 'mpo', 'Mapoly0142s0012' => 'mpo', 'MBI01_g32854_MAGBIO' => 'mbi', 'MBI11_g24427_MAGBIO' => 'mbi', 'MBI11_g47319_MAGBIO' => 'mbi', 'MCO01G433' => 'mco', 'MD00G1187800' => 'mdo', 'MD04G1226500' => 'mdo', 'MD05G1203900' => 'mdo', 'MD10G1191100' => 'mdo', 'MD12G1243500' => 'mdo', 'MD13G1207000' => 'mdo', 'MD13G1207100' => 'mdo', 'MD16G1208600' => 'mdo', 'Medtr1g050352' => 'mtr', 'Medtr1g070385' => 'mtr', 'Medtr1g070450' => 'mtr', 'Medtr1g075200' => 'mtr', 'Medtr1g075250' => 'mtr', 'Medtr1g075260' => 'mtr', 'Medtr1g475250' => 'mtr', 'Medtr4g075450' => 'mtr', 'Medtr7g096300' => 'mtr', 'Medtr8g105110' => 'mtr', 'MELO3C006470.2' => 'cme', 'MELO3C006471.2' => 'cme', 'MELO3C020772.2' => 'cme', 'MELO3C026780.2' => 'cme', 'MELO3C026781.2' => 'cme', 'Migut.D00390' => 'egut', 'Migut.G00435' => 'egut', 'Migut.G00436' => 'egut', 'Migut.G00718' => 'egut', 'MSTRG.21891' => 'ama', 'MSTRG.26910' => 'ama', 'MSTRG.4099' => 'ama', 'MSTRG.9925' => 'ama', 'Nitab4.5_0000165g0010' => 'nta', 'Nitab4.5_0000209g0180' => 'nta', 'Nitab4.5_0000244g0440' => 'nta', 'Nitab4.5_0000525g0220' => 'nta', 'Nitab4.5_0001597g0020' => 'nta', 'Nitab4.5_0001878g0040' => 'nta', 'Nitab4.5_0001878g0060' => 'nta', 'Nitab4.5_0002838g0100' => 'nta', 'Nitab4.5_0002838g0120' => 'nta', 'Nitab4.5_0004798g0030' => 'nta', 'Nitab4.5_0005420g0010' => 'nta', 'Nitab4.5_0005507g0010' => 'nta', 'Nitab4.5_0005574g0020' => 'nta', 'Nitab4.5_0005838g0010' => 'nta', 'Nitab4.5_0010580g0020' => 'nta', 'Nn1g02599' => 'nnu', 'Nn1g02608' => 'nnu', 'Nn3g17742' => 'nnu', 'Nn3g19534' => 'nnu', 'Nn3g19535' => 'nnu', 'Oeu008790.1' => 'oeu', 'Oeu008792.1' => 'oeu', 'Oeu032590.1' => 'oeu', 'Oeu035349.1' => 'oeu', 'Oeu049791.1' => 'oeu', 'Os01g0774500' => 'osa', 'Os03g0628800' => 'osa', 'Os03g0798600' => 'osa', 'Os05g0508800' => 'osa', 'Peaxi162Scf00036g02018' => 'pax', 'Peaxi162Scf00578g00032' => 'pax', 'Peaxi162Scf00578g00317' => 'pax', 'Peaxi162Scf00785g00114' => 'pax', 'Peaxi162Scf00813g00119' => 'pax', 'Peaxi162Scf00906g00227' => 'pax', 'PGR004G0875' => 'pgr', 'PGR004G2424' => 'pgr', 'PGR031G1239' => 'pgr', 'PGR031G2474' => 'pgr', 'PGR044G0423' => 'pgr', 'PGSC0003DMG400001128' => 'stu', 'PGSC0003DMG400007336' => 'stu', 'PGSC0003DMG400016318' => 'stu', 'PGSC0003DMG400016319' => 'stu', 'PGSC0003DMG400018074' => 'stu', 'Phvul.001G157700' => 'pvu', 'Phvul.002G148550' => 'pvu', 'Phvul.002G320200' => 'pvu', 'Phvul.003G089200' => 'pvu', 'Phvul.007G126000' => 'pvu', 'Phvul.007G126100' => 'pvu', 'Phvul.007G178000' => 'pvu', 'Phvul.007G178200' => 'pvu', 'Potri.002G043000' => 'ptr', 'Potri.002G043200' => 'ptr', 'Potri.003G123750' => 'ptr', 'Potri.005G055401' => 'ptr', 'Potri.005G219700' => 'ptr', 'Potri.005G220000' => 'ptr', 'Potri.008G161901' => 'ptr', 'Potri.008G162000' => 'ptr', 'Potri.008G162400' => 'ptr', 'Potri.010G076900' => 'ptr', 'Pp3c12_9180' => 'ppa', 'Pp3c13_19770' => 'ppa', 'Pp3c14_22950' => 'ppa', 'Pp3c16_12160' => 'ppa', 'Pp3c27_7820' => 'ppa', 'Pp3c2_3490' => 'ppa', 'Pp3c3_23700' => 'ppa', 'Pp3c3_36520' => 'ppa', 'Pp3c4_15250' => 'ppa', 'PRCOL_00007002' => 'pco', 'Prupe.1G030600' => 'ppe', 'Prupe.1G030700' => 'ppe', 'Prupe.6G345200' => 'ppe', 'Prupe.8G230300' => 'ppe', 'Prupe.8G230500' => 'ppe', 'Psat3g059600' => 'psa', 'Psat5g200920' => 'psa', 'Psat6g056440' => 'psa', 'Psat6g057360' => 'psa', 'Psat6g134120' => 'psa', 'Psat6g134160' => 'psa', 'Psat7g008640' => 'psa', 'Psat7g185240' => 'psa', 'PSO017G1330' => 'pso', 'PSO063G6097' => 'pso', 'PSO170G0835' => 'pso', 'PSO170G2499' => 'pso', 'PSO210G5058' => 'pso', 'PSO210G6154' => 'pso', 'PSO585G0031' => 'pso', 'PSO832G0264' => 'pso', 'PSO832G4288' => 'pso', 'QL03p027355' => 'qlo', 'QL03p027430' => 'qlo', 'QL04p081380' => 'qlo', 'QL06p015642' => 'qlo', 'QL06p015650' => 'qlo', 'QL06p015686' => 'qlo', 'QL12p042927' => 'qlo', 'QL93p1863_0035' => 'qlo', 'RcHm_v2.0_Chr3g0450581' => 'rch', 'RcHm_v2.0_Chr4g0390371' => 'rch', 'RcHm_v2.0_Chr4g0390381' => 'rch', 'RcHm_v2.0_Chr4g0390491' => 'rch', 'RcHm_v2.0_Chr4g0390501' => 'rch', 'RcHm_v2.0_Chr6g0289231' => 'rch', 'Rhsim04G0190400' => 'rsi', 'Rhsim04G0190500' => 'rsi', 'Rhsim04G0190600' => 'rsi', 'Rhsim13G0031400' => 'rsi', 'Rhsim13G0165600' => 'rsi', 'RhsimUnG0114600' => 'rsi', 'RhsimUnG0114700' => 'rsi', 'Sabra02G0034800' => 'sbr', 'Sabra02G0035100' => 'sbr', 'Sabra05G0168600' => 'sbr', 'Sabra05G0168800' => 'sbr', 'Sabra08G0123700' => 'sbr', 'Sabra10G0031900' => 'sbr', 'Sabra13G0039000' => 'sbr', 'SalBow2G0782' => 'sbo', 'SalBow2G1403' => 'sbo', 'SalBow4G0074' => 'sbo', 'SalBow4G2635' => 'sbo', 'SalBow5G3010' => 'sbo', 'Sc05g0000870' => 'sci', 'Sc05g0000890' => 'sci', 'Sc13g0005000' => 'sci', 'Sc13g0005030' => 'sci', 'Sc19g0003790' => 'sci', 'Sc19g0003800' => 'sci', 'Sed0003467' => 'sed', 'Sed0009355' => 'sed', 'Sed0009894' => 'sed', 'Sed0011972' => 'sed', 'Sed0021483' => 'sed', 'Sed0021750' => 'sed', 'Sed0026279' => 'sed', 'SEGI_05312' => 'sgi', 'SEGI_10112' => 'sgi', 'SEGI_15835' => 'sgi', 'SEGI_30386' => 'sgi', 'SEGI_34122' => 'sgi', 'SEGI_35063' => 'sgi', 'SGA_v2.0_scaffold101G29794' => 'sas', 'SGA_v2.0_scaffold1G00573' => 'sas', 'SGA_v2.0_scaffold79G25637' => 'sas', 'SGA_v2.0_scaffold88G27283' => 'sas', 'SGA_v2.0_scaffold88G27285' => 'sas', 'SGA_v2.0_scaffold88G27331' => 'sas', 'SHI09937' => 'shi', 'SMO119G0302' => 'smo', 'SMO137G0231' => 'smo', 'SMO367G1151' => 'smo', 'Solyc02g082000.3' => 'sly', 'Solyc06g031670.3' => 'sly', 'Solyc06g053810.3' => 'sly', 'Solyc07g025457.1' => 'sly', 'Solyc08g059740.1' => 'sly', 'Solyc08g059750.3' => 'sly', 'Solyc09g083370.3' => 'sly', 'Solyc12g038950.3' => 'sly', 'Sopen02g026630' => 'spe', 'Sopen06g018930' => 'spe', 'Sopen06g018940' => 'spe', 'Sopen08g009460' => 'spe', 'Sopen09g032290' => 'spe', 'Sp1g03080' => 'spa', 'Sp1g03090' => 'spa', 'Sp1g05480' => 'spa', 'Sp2g07860' => 'spa', 'Sp2g08430' => 'spa', 'Sp2g08440' => 'spa', 'Sp2g26200' => 'spa', 'Sp4g13170' => 'spa', 'Sp6g33840' => 'spa', 'SpUn1204_0010' => 'spa', 'TAR365G0908' => 'tar', 'TAR381G1270' => 'tar', 'TAR381G1651' => 'tar', 'TAR625G1131' => 'tar', 'TAR633G0962' => 'tar', 'TAR633G1729' => 'tar', 'TAR633G1864' => 'tar', 'TAR636G0221' => 'tar', 'TAR636G0314' => 'tar', 'TAR636G3202' => 'tar', 'THA.LOC104800805' => 'tha', 'THA.LOC104801096' => 'tha', 'THA.LOC104801555' => 'tha', 'THA.LOC104808491' => 'tha', 'THA.LOC104808595' => 'tha', 'THA.LOC104815985' => 'tha', 'THA.LOC104822250' => 'tha', 'THA.LOC104826071' => 'tha', 'Thecc.01G265200' => 'tca', 'Thecc.01G265300' => 'tca', 'Thecc.01G265700' => 'tca', 'Thecc.03G109100' => 'tca', 'Thecc.04G245900' => 'tca', 'Thecc.04G246000' => 'tca', 'Thhalv10003334m.g' => 'esa', 'Thhalv10005508m.g' => 'esa', 'Thhalv10005643m.g' => 'esa', 'Thhalv10007316m.g' => 'esa', 'Thhalv10009006m.g' => 'esa', 'Thhalv10009309m.g' => 'esa', 'Thhalv10014917m.g' => 'esa', 'Thhalv10014919m.g' => 'esa', 'Thhalv10015393m.g' => 'esa', 'Thhalv10016515m.g' => 'esa', 'Thhalv10029242m.g' => 'esa', 'TPR.G16654' => 'tpr', 'TPR.G20589' => 'tpr', 'TPR.G23029' => 'tpr', 'TPR.G27731' => 'tpr', 'TPR.G28889' => 'tpr', 'TPR.G28899' => 'tpr', 'TPR.G30846' => 'tpr', 'TPR.G5452' => 'tpr', 'TPR.G5713' => 'tpr', 'TPR.G9046' => 'tpr', 'TPR.G9061' => 'tpr', 'TWI09G1075' => 'twi', 'TWI12G0806' => 'twi', 'TWI18G0108' => 'twi', 'TWI53G1361' => 'twi', 'TWI73G0185' => 'twi', 'TWI73G0427' => 'twi', 'unitig_37.g12001' => 'ugi', 'unitig_747.g21660' => 'ugi', 'unitig_748.g7232' => 'ugi', 'unitig_748.g7315' => 'ugi', 'unitig_85.g27262' => 'ugi', 'unitig_92.g28220' => 'ugi', 'vmacro02632' => 'vma', 'vmacro08410' => 'vma', 'vmacro08411' => 'vma', 'vmacro15407' => 'vma', 'VMungo0251G3619' => 'vmu', 'VMungo0720G1204' => 'vmu', 'VMungo0720G1918' => 'vmu', 'VMungo0720G2387' => 'vmu', 'VMungo0720G2961' => 'vmu', 'VMungo1215G2154' => 'vmu', 'VMungo1383G2411' => 'vmu', 'Zm00001eb051130' => 'zma', 'Zm00001eb116830' => 'zma', 'Zm00001eb116850' => 'zma', 'Zm00001eb151740' => 'zma', 'Zm00001eb292360' => 'zma', 'Zm00001eb301640' => 'zma' ), 'gf_id' => 'HOM05D000856', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000856' ), 'data_identifier' => 'HOM05D000856', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000856', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p00010' => 'bna', 'A03p04160' => 'bna', 'A03p17160' => 'bna', 'A04p23370' => 'bna', 'A05p14860' => 'bna', 'A08p37020' => 'bna', 'A09p08050' => 'bna', 'A09p66800' => 'bna', 'A09p67940' => 'bna', 'A10p02680' => 'bna', 'A10p05320' => 'bna', 'Aa31LG1G20560' => 'aar', 'Aa31LG1G20610' => 'aar', 'Aa31LG1G7810' => 'aar', 'Aa31LG5G3590' => 'aar', 'Aa31LG5G6140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3819' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4683' => 'aag', 'Actinidia04480' => 'ach', 'Actinidia05466' => 'ach', 'Actinidia08445' => 'ach', 'Actinidia21170' => 'ach', 'Actinidia24812' => 'ach', 'Actinidia24951' => 'ach', 'Actinidia40088' => 'ach', 'Ah.02g111660' => 'amhyb', 'Ah.11g048900' => 'amhyb', 'Ah.11g049910' => 'amhyb', 'AL1G13870' => 'aly', 'AL1G13880' => 'aly', 'AL1G16760' => 'aly', 'AL390U10020' => 'aly', 'AL4G25520' => 'aly', 'AL6G19890' => 'aly', 'AL6G19900' => 'aly', 'AL6G19910' => 'aly', 'AL8G40100' => 'aly', 'Aqoxy2G03562' => 'aox', 'Aqoxy5G00316' => 'aox', 'Aqoxy5G00926' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1628KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1H403S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2FU6SJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.882I6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8YRY2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YN1SN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AF70II' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZA8L1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F916KL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHRD8H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KTZ8QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S22EMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8M29T' => 'arhy', 'AT1G04270' => 'ath', 'AT1G04280' => 'ath', 'AT1G06750' => 'ath', 'AT1G33850' => 'ath', 'AT2G30630' => 'ath', 'AT5G09490' => 'ath', 'AT5G09500' => 'ath', 'AT5G09510' => 'ath', 'AT5G43640' => 'ath', 'AT5G63070' => 'ath', 'ATR0605G315' => 'atr', 'Atru.chr11.175' => 'acertr', 'Atru.chr11.653' => 'acertr', 'Atru.chr3.1616' => 'acertr', 'Atru.chr4.2230' => 'acertr', 'Atru.chr4.2232' => 'acertr', 'Atru.chr5.1598' => 'acertr', 'Atru.chr5.1600' => 'acertr', 'Atru.chr5.2188' => 'acertr', 'AUR62008326' => 'cqu', 'AUR62011922' => 'cqu', 'AUR62011924' => 'cqu', 'AUR62021771' => 'cqu', 'AUR62032237' => 'cqu', 'AUR62032240' => 'cqu', 'BcaB01g05572' => 'bca', 'BcaB02g10337' => 'bca', 'BcaB04g19944' => 'bca', 'BcaB05g21548' => 'bca', 'BcaB05g21549' => 'bca', 'BcaB05g23227' => 'bca', 'BcaB06g26256' => 'bca', 'BcaB06g26257' => 'bca', 'BcaB06g28379' => 'bca', 'BcaC02g11159' => 'bca', 'BcaC03g13258' => 'bca', 'BcaC03g13259' => 'bca', 'BcaC05g24456' => 'bca', 'BcaC05g24457' => 'bca', 'BcaC07g36922' => 'bca', 'BcaC07g36923' => 'bca', 'BcaC07g42050' => 'bca', 'BcaC07g42176' => 'bca', 'BcaC07g42195' => 'bca', 'BcaC07g42196' => 'bca', 'BcaNung06674' => 'bca', 'BolC2t06351H' => 'bol', 'BolC2t06352H' => 'bol', 'BolC3t12993H' => 'bol', 'BolC4t23525H' => 'bol', 'BolC4t27475H' => 'bol', 'BolC5t29025H' => 'bol', 'BolC5t29026H' => 'bol', 'BolC8t46898H' => 'bol', 'BolC8t46899H' => 'bol', 'BolC8t52630H' => 'bol', 'BolC8t52765H' => 'bol', 'BolC9t53824H' => 'bol', 'BraA03t09760Z' => 'bra', 'BraA03t10990Z' => 'bra', 'BraA05t20413Z' => 'bra', 'BraA08t35602Z' => 'bra', 'BraA09t36458Z' => 'bra', 'BraA09t42018Z' => 'bra', 'BraA09t42129Z' => 'bra', 'BraA10t42536Z' => 'bra', 'BraA10t42537Z' => 'bra', 'C01p10690' => 'bna', 'C02p03890' => 'bna', 'C02p03900' => 'bna', 'C03p04620' => 'bna', 'C04p19870' => 'bna', 'C04p59670' => 'bna', 'C05p02460' => 'bna', 'C05p02470' => 'bna', 'C08p00980' => 'bna', 'C08p00990' => 'bna', 'C08p51030' => 'bna', 'C08p52360' => 'bna', 'C09p09120' => 'bna', 'CAN.G19.15' => 'can', 'CAN.G251.10' => 'can', 'CAN.G251.9' => 'can', 'CAN.G398.24' => 'can', 'CAN.G410.32' => 'can', 'CAN.G881.2' => 'can', 'CANSAT01G3025' => 'cansat', 'CANSAT78G1211' => 'cansat', 'CANSAT78G1218' => 'cansat', 'CANSAT78G1521' => 'cansat', 'CANSAT78G1670' => 'cansat', 'CARHR003600' => 'chi', 'CARHR003610' => 'chi', 'CARHR006290' => 'chi', 'CARHR006430' => 'chi', 'CARHR124110' => 'chi', 'CARHR203870' => 'chi', 'CARHR203880' => 'chi', 'CARHR203890' => 'chi', 'CARHR276880' => 'chi', 'Carub.0001s0346' => 'cru', 'Carub.0001s0347' => 'cru', 'Carub.0001s0607' => 'cru', 'Carub.0003s2768' => 'cru', 'Carub.0003s2769' => 'cru', 'Carub.0004s1178' => 'cru', 'Carub.0006s0806' => 'cru', 'Carub.0006s0807' => 'cru', 'Carub.0006s0808' => 'cru', 'Carub.0008s0501' => 'cru', 'Carub.0008s2379' => 'cru', 'Ca_08655_v3' => 'car', 'Ca_08922_v3' => 'car', 'Ca_08923_v3' => 'car', 'Ca_09119_v3' => 'car', 'Ca_09703_v3' => 'car', 'Ca_09705_v3' => 'car', 'Ca_09835_v3' => 'car', 'Ca_26403_v3' => 'car', 'Ca_30719_v3' => 'car', 'CBR_g17958' => 'cbr', 'CBR_g40516' => 'cbr', 'Cc00_g05350' => 'ccan', 'Cc01_g18690' => 'ccan', 'Cc03_g04830' => 'ccan', 'Cc03_g04850' => 'ccan', 'CDE02G4469' => 'cde', 'CDE06G0883' => 'cde', 'CDE06G1295' => 'cde', 'CDE06G1390' => 'cde', 'CDE07G0584' => 'cde', 'CDE07G1084' => 'cde', 'CDE08G1259' => 'cde', 'Cfa002341' => 'cfa', 'Cfa024337' => 'cfa', 'Ciclev10004749m.g' => 'ccl', 'Ciclev10006127m.g' => 'ccl', 'Ciclev10019720m.g' => 'ccl', 'Ciclev10022652m.g' => 'ccl', 'CiPaw.01G190400' => 'cil', 'CiPaw.01G190500' => 'cil', 'CiPaw.02G116400' => 'cil', 'CiPaw.02G116500' => 'cil', 'CiPaw.04G183000' => 'cil', 'CiPaw.04G183300' => 'cil', 'ClCG05G004610' => 'cla', 'ClCG05G004620' => 'cla', 'ClCG06G006730' => 'cla', 'ClCG06G006740' => 'cla', 'ClCG11G003690' => 'cla', 'COL.COLO4_08276' => 'col', 'COL.COLO4_08277' => 'col', 'COL.COLO4_15787' => 'col', 'COL.COLO4_15789' => 'col', 'Cpa.g.c44815' => 'cpa', 'Cpa.g.sc52.144' => 'cpa', 'Cpa.g.sc58.46' => 'cpa', 'Cpa.g.sc58.47' => 'cpa', 'Cre08.g360900' => 'cre', 'CsaV3_2G013030' => 'csa', 'CsaV3_2G013050' => 'csa', 'CsaV3_2G015620' => 'csa', 'CsaV3_3G012590' => 'csa', 'CsaV3_3G012600' => 'csa', 'CSS0001641' => 'camsi', 'CSS0008310' => 'camsi', 'CSS0013011' => 'camsi', 'CSS0017147' => 'camsi', 'CSS0022970' => 'camsi', 'CSS0025655' => 'camsi', 'CSS0028665' => 'camsi', 'CSS0029117' => 'camsi', 'CSS0032024' => 'camsi', 'CSS0039681' => 'camsi', 'CSS0046516' => 'camsi', 'CSS0050307' => 'camsi', 'DCAR_005871' => 'dca', 'DCAR_007342' => 'dca', 'DCAR_024228' => 'dca', 'DCAR_027277' => 'dca', 'DCAR_030718' => 'dca', 'Dinv20287' => 'din', 'Dinv22461' => 'din', 'Dinv22464' => 'din', 'Dinv29912' => 'din', 'Dinv29913' => 'din', 'Dinv34580' => 'din', 'Dinv34582' => 'din', 'Dinv44632' => 'din', 'Duzib052G0266' => 'dzi', 'Duzib133G0907' => 'dzi', 'Duzib133G1034' => 'dzi', 'Duzib138G0207' => 'dzi', 'Duzib138G0491' => 'dzi', 'Duzib151G0812' => 'dzi', 'Duzib151G1166' => 'dzi', 'Duzib168G0192' => 'dzi', 'Duzib211G0077' => 'dzi', 'Duzib212G0429' => 'dzi', 'Duzib212G0472' => 'dzi', 'ECA233G2617' => 'eca', 'ECA236G4188' => 'eca', 'ECA240G0936' => 'eca', 'ECA240G1129' => 'eca', 'ECA247G0623' => 'eca', 'EL10Ac5g10451' => 'bvu', 'EL10Ac5g10453' => 'bvu', 'EL10Ac5g10894' => 'bvu', 'Eucgr.H00192' => 'egr', 'Eucgr.H00193' => 'egr', 'Eucgr.H00194' => 'egr', 'Eucgr.J01562' => 'egr', 'Eucgr.K03301' => 'egr', 'FAN02G0632' => 'fan', 'FAN05G5378' => 'fan', 'FAN09G3247' => 'fan', 'FAN12G0435' => 'fan', 'FAN12G2426' => 'fan', 'FAN14G1707' => 'fan', 'FAN14G4725' => 'fan', 'FAN15G2071' => 'fan', 'FAN17G3065' => 'fan', 'FAN19G1376' => 'fan', 'FAN20G0354' => 'fan', 'FAN20G2429' => 'fan', 'FAN20G2658' => 'fan', 'FAN24G2343' => 'fan', 'FAN27G2362' => 'fan', 'FAN28G1765' => 'fan', 'FvH4_1g16020' => 'fve', 'FvH4_2g04890' => 'fve', 'FvH4_2g22270' => 'fve', 'FvH4_4g02630' => 'fve', 'FvH4_4g02640' => 'fve', 'FvH4_6g02650' => 'fve', 'Glyma.02G140600' => 'gma', 'Glyma.03G159900' => 'gma', 'Glyma.05G234800' => 'gma', 'Glyma.07G269600' => 'gma', 'Glyma.08G042300' => 'gma', 'Glyma.10G033500' => 'gma', 'Glyma.10G185200' => 'gma', 'Glyma.17G004300' => 'gma', 'Glyma.19G161900' => 'gma', 'Glyma.20G205100' => 'gma', 'Glyma.20G205200' => 'gma', 'Gohir.A01G139101' => 'ghi', 'Gohir.A02G035600' => 'ghi', 'Gohir.A02G117901' => 'ghi', 'Gohir.A07G210100' => 'ghi', 'Gohir.A07G210200' => 'ghi', 'Gohir.A08G061100' => 'ghi', 'Gohir.A09G223000' => 'ghi', 'Gohir.A09G223100' => 'ghi', 'Gohir.A10G113900' => 'ghi', 'Gohir.A10G114000' => 'ghi', 'Gohir.D02G042300' => 'ghi', 'Gohir.D07G216100' => 'ghi', 'Gohir.D07G216200' => 'ghi', 'Gohir.D08G070400' => 'ghi', 'Gohir.D09G225000' => 'ghi', 'Gohir.D09G225100' => 'ghi', 'Gohir.D10G152300' => 'ghi', 'Gohir.D10G153200' => 'ghi', 'Gohir.D11G133701' => 'ghi', 'Gorai.004G074100' => 'gra', 'Gorai.005G046800' => 'gra', 'Gorai.006G246500' => 'gra', 'Gorai.006G246600' => 'gra', 'Gorai.007G142900' => 'gra', 'Gorai.011G171000' => 'gra', 'Gorai.011G171100' => 'gra', 'Gorai.013G104300' => 'gra', 'Gorai.013G104400' => 'gra', 'GSVIVG01000754001' => 'vvi', 'GSVIVG01000756001' => 'vvi', 'GSVIVG01010903001' => 'vvi', 'GSVIVG01017623001' => 'vvi', 'GSVIVG01018113001' => 'vvi', 'GSVIVG01018116001' => 'vvi', 'GSVIVG01018118001' => 'vvi', 'HanXRQChr03g0076211' => 'han', 'HanXRQChr03g0092431' => 'han', 'HanXRQChr03g0092441' => 'han', 'HanXRQChr03g0092591' => 'han', 'HanXRQChr03g0092671' => 'han', 'HanXRQChr03g0092681' => 'han', 'HanXRQChr03g0092691' => 'han', 'HanXRQChr03g0092701' => 'han', 'HanXRQChr03g0092721' => 'han', 'HanXRQChr03g0092731' => 'han', 'HanXRQChr04g0113681' => 'han', 'HanXRQChr10g0281371' => 'han', 'HanXRQChr11g0337141' => 'han', 'HanXRQChr13g0424521' => 'han', 'HanXRQChr13g0424531' => 'han', 'HanXRQChr13g0424541' => 'han', 'HanXRQChr16g0498221' => 'han', 'Haze_04377' => 'cav', 'Haze_11298' => 'cav', 'Haze_24547' => 'cav', 'Haze_24550' => 'cav', 'Haze_26587' => 'cav', 'Hma1.2p1_0650F.1_g195410' => 'hma', 'Hma1.2p1_0893F.1_g233470' => 'hma', 'HPP92_006508' => 'vpl', 'HPP92_024780' => 'vpl', 'Hund02688' => 'sun', 'Hund09380' => 'sun', 'Hund09381' => 'sun', 'Hund09832' => 'sun', 'Hund09833' => 'sun', 'Hund11351' => 'sun', 'Hund11513' => 'sun', 'Lalb_Chr06g0162591' => 'lal', 'Lalb_Chr06g0162601' => 'lal', 'Lalb_Chr06g0169321' => 'lal', 'Lalb_Chr09g0330951' => 'lal', 'Lalb_Chr16g0387631' => 'lal', 'Lalb_Chr21g0306241' => 'lal', 'Lalb_Chr25g0290051' => 'lal', 'Lalb_Chr25g0290061' => 'lal', 'Lalb_Chr25g0290071' => 'lal', 'Lj1g0003876' => 'lja', 'Lj1P1207T36' => 'lonja', 'Lj2C1156G12' => 'lonja', 'Lj3A793G39' => 'lonja', 'Lj3C580G2' => 'lonja', 'Lj3C780G2' => 'lonja', 'Lj3C780T4' => 'lonja', 'Lj3C793G9' => 'lonja', 'Lj4g0012960' => 'lja', 'Lj5g0021252' => 'lja', 'Lj5g0021484' => 'lja', 'Lj5g0024528' => 'lja', 'Lj6A399T12' => 'lonja', 'Lj6A656G65' => 'lonja', 'Lsat_1_v5_gn_3_125500' => 'lsa', 'Lsat_1_v5_gn_3_125540' => 'lsa', 'Lsat_1_v5_gn_5_72701' => 'lsa', 'Lsat_1_v5_gn_8_91560' => 'lsa', 'Lsat_1_v5_gn_9_9640' => 'lsa', 'Manes.01G200600' => 'mes', 'Manes.01G200700' => 'mes', 'Manes.03G168900' => 'mes', 'Manes.03G169000' => 'mes', 'Manes.05G085801' => 'mes', 'Manes.05G086200' => 'mes', 'Manes.15G036700' => 'mes', 'Manes.15G036900' => 'mes', 'Mapoly0004s0172' => 'mpo', 'Mapoly0023s0001' => 'mpo', 'Mapoly0142s0012' => 'mpo', 'MBI01_g32854_MAGBIO' => 'mbi', 'MBI11_g24427_MAGBIO' => 'mbi', 'MBI11_g47319_MAGBIO' => 'mbi', 'MCO01G433' => 'mco', 'MD00G1187800' => 'mdo', 'MD04G1226500' => 'mdo', 'MD05G1203900' => 'mdo', 'MD10G1191100' => 'mdo', 'MD12G1243500' => 'mdo', 'MD13G1207000' => 'mdo', 'MD13G1207100' => 'mdo', 'MD16G1208600' => 'mdo', 'Medtr1g050352' => 'mtr', 'Medtr1g070385' => 'mtr', 'Medtr1g070450' => 'mtr', 'Medtr1g075200' => 'mtr', 'Medtr1g075250' => 'mtr', 'Medtr1g075260' => 'mtr', 'Medtr1g475250' => 'mtr', 'Medtr4g075450' => 'mtr', 'Medtr7g096300' => 'mtr', 'Medtr8g105110' => 'mtr', 'MELO3C006470.2' => 'cme', 'MELO3C006471.2' => 'cme', 'MELO3C020772.2' => 'cme', 'MELO3C026780.2' => 'cme', 'MELO3C026781.2' => 'cme', 'Migut.D00390' => 'egut', 'Migut.G00435' => 'egut', 'Migut.G00436' => 'egut', 'Migut.G00718' => 'egut', 'MSTRG.21891' => 'ama', 'MSTRG.26910' => 'ama', 'MSTRG.4099' => 'ama', 'MSTRG.9925' => 'ama', 'Nitab4.5_0000165g0010' => 'nta', 'Nitab4.5_0000209g0180' => 'nta', 'Nitab4.5_0000244g0440' => 'nta', 'Nitab4.5_0000525g0220' => 'nta', 'Nitab4.5_0001597g0020' => 'nta', 'Nitab4.5_0001878g0040' => 'nta', 'Nitab4.5_0001878g0060' => 'nta', 'Nitab4.5_0002838g0100' => 'nta', 'Nitab4.5_0002838g0120' => 'nta', 'Nitab4.5_0004798g0030' => 'nta', 'Nitab4.5_0005420g0010' => 'nta', 'Nitab4.5_0005507g0010' => 'nta', 'Nitab4.5_0005574g0020' => 'nta', 'Nitab4.5_0005838g0010' => 'nta', 'Nitab4.5_0010580g0020' => 'nta', 'Nn1g02599' => 'nnu', 'Nn1g02608' => 'nnu', 'Nn3g17742' => 'nnu', 'Nn3g19534' => 'nnu', 'Nn3g19535' => 'nnu', 'Oeu008790.1' => 'oeu', 'Oeu008792.1' => 'oeu', 'Oeu032590.1' => 'oeu', 'Oeu035349.1' => 'oeu', 'Oeu049791.1' => 'oeu', 'Os01g0774500' => 'osa', 'Os03g0628800' => 'osa', 'Os03g0798600' => 'osa', 'Os05g0508800' => 'osa', 'Peaxi162Scf00036g02018' => 'pax', 'Peaxi162Scf00578g00032' => 'pax', 'Peaxi162Scf00578g00317' => 'pax', 'Peaxi162Scf00785g00114' => 'pax', 'Peaxi162Scf00813g00119' => 'pax', 'Peaxi162Scf00906g00227' => 'pax', 'PGR004G0875' => 'pgr', 'PGR004G2424' => 'pgr', 'PGR031G1239' => 'pgr', 'PGR031G2474' => 'pgr', 'PGR044G0423' => 'pgr', 'PGSC0003DMG400001128' => 'stu', 'PGSC0003DMG400007336' => 'stu', 'PGSC0003DMG400016318' => 'stu', 'PGSC0003DMG400016319' => 'stu', 'PGSC0003DMG400018074' => 'stu', 'Phvul.001G157700' => 'pvu', 'Phvul.002G148550' => 'pvu', 'Phvul.002G320200' => 'pvu', 'Phvul.003G089200' => 'pvu', 'Phvul.007G126000' => 'pvu', 'Phvul.007G126100' => 'pvu', 'Phvul.007G178000' => 'pvu', 'Phvul.007G178200' => 'pvu', 'Potri.002G043000' => 'ptr', 'Potri.002G043200' => 'ptr', 'Potri.003G123750' => 'ptr', 'Potri.005G055401' => 'ptr', 'Potri.005G219700' => 'ptr', 'Potri.005G220000' => 'ptr', 'Potri.008G161901' => 'ptr', 'Potri.008G162000' => 'ptr', 'Potri.008G162400' => 'ptr', 'Potri.010G076900' => 'ptr', 'Pp3c12_9180' => 'ppa', 'Pp3c13_19770' => 'ppa', 'Pp3c14_22950' => 'ppa', 'Pp3c16_12160' => 'ppa', 'Pp3c27_7820' => 'ppa', 'Pp3c2_3490' => 'ppa', 'Pp3c3_23700' => 'ppa', 'Pp3c3_36520' => 'ppa', 'Pp3c4_15250' => 'ppa', 'PRCOL_00007002' => 'pco', 'Prupe.1G030600' => 'ppe', 'Prupe.1G030700' => 'ppe', 'Prupe.6G345200' => 'ppe', 'Prupe.8G230300' => 'ppe', 'Prupe.8G230500' => 'ppe', 'Psat3g059600' => 'psa', 'Psat5g200920' => 'psa', 'Psat6g056440' => 'psa', 'Psat6g057360' => 'psa', 'Psat6g134120' => 'psa', 'Psat6g134160' => 'psa', 'Psat7g008640' => 'psa', 'Psat7g185240' => 'psa', 'PSO017G1330' => 'pso', 'PSO063G6097' => 'pso', 'PSO170G0835' => 'pso', 'PSO170G2499' => 'pso', 'PSO210G5058' => 'pso', 'PSO210G6154' => 'pso', 'PSO585G0031' => 'pso', 'PSO832G0264' => 'pso', 'PSO832G4288' => 'pso', 'QL03p027355' => 'qlo', 'QL03p027430' => 'qlo', 'QL04p081380' => 'qlo', 'QL06p015642' => 'qlo', 'QL06p015650' => 'qlo', 'QL06p015686' => 'qlo', 'QL12p042927' => 'qlo', 'QL93p1863_0035' => 'qlo', 'RcHm_v2.0_Chr3g0450581' => 'rch', 'RcHm_v2.0_Chr4g0390371' => 'rch', 'RcHm_v2.0_Chr4g0390381' => 'rch', 'RcHm_v2.0_Chr4g0390491' => 'rch', 'RcHm_v2.0_Chr4g0390501' => 'rch', 'RcHm_v2.0_Chr6g0289231' => 'rch', 'Rhsim04G0190400' => 'rsi', 'Rhsim04G0190500' => 'rsi', 'Rhsim04G0190600' => 'rsi', 'Rhsim13G0031400' => 'rsi', 'Rhsim13G0165600' => 'rsi', 'RhsimUnG0114600' => 'rsi', 'RhsimUnG0114700' => 'rsi', 'Sabra02G0034800' => 'sbr', 'Sabra02G0035100' => 'sbr', 'Sabra05G0168600' => 'sbr', 'Sabra05G0168800' => 'sbr', 'Sabra08G0123700' => 'sbr', 'Sabra10G0031900' => 'sbr', 'Sabra13G0039000' => 'sbr', 'SalBow2G0782' => 'sbo', 'SalBow2G1403' => 'sbo', 'SalBow4G0074' => 'sbo', 'SalBow4G2635' => 'sbo', 'SalBow5G3010' => 'sbo', 'Sc05g0000870' => 'sci', 'Sc05g0000890' => 'sci', 'Sc13g0005000' => 'sci', 'Sc13g0005030' => 'sci', 'Sc19g0003790' => 'sci', 'Sc19g0003800' => 'sci', 'Sed0003467' => 'sed', 'Sed0009355' => 'sed', 'Sed0009894' => 'sed', 'Sed0011972' => 'sed', 'Sed0021483' => 'sed', 'Sed0021750' => 'sed', 'Sed0026279' => 'sed', 'SEGI_05312' => 'sgi', 'SEGI_10112' => 'sgi', 'SEGI_15835' => 'sgi', 'SEGI_30386' => 'sgi', 'SEGI_34122' => 'sgi', 'SEGI_35063' => 'sgi', 'SGA_v2.0_scaffold101G29794' => 'sas', 'SGA_v2.0_scaffold1G00573' => 'sas', 'SGA_v2.0_scaffold79G25637' => 'sas', 'SGA_v2.0_scaffold88G27283' => 'sas', 'SGA_v2.0_scaffold88G27285' => 'sas', 'SGA_v2.0_scaffold88G27331' => 'sas', 'SHI09937' => 'shi', 'SMO119G0302' => 'smo', 'SMO137G0231' => 'smo', 'SMO367G1151' => 'smo', 'Solyc02g082000.3' => 'sly', 'Solyc06g031670.3' => 'sly', 'Solyc06g053810.3' => 'sly', 'Solyc07g025457.1' => 'sly', 'Solyc08g059740.1' => 'sly', 'Solyc08g059750.3' => 'sly', 'Solyc09g083370.3' => 'sly', 'Solyc12g038950.3' => 'sly', 'Sopen02g026630' => 'spe', 'Sopen06g018930' => 'spe', 'Sopen06g018940' => 'spe', 'Sopen08g009460' => 'spe', 'Sopen09g032290' => 'spe', 'Sp1g03080' => 'spa', 'Sp1g03090' => 'spa', 'Sp1g05480' => 'spa', 'Sp2g07860' => 'spa', 'Sp2g08430' => 'spa', 'Sp2g08440' => 'spa', 'Sp2g26200' => 'spa', 'Sp4g13170' => 'spa', 'Sp6g33840' => 'spa', 'SpUn1204_0010' => 'spa', 'TAR365G0908' => 'tar', 'TAR381G1270' => 'tar', 'TAR381G1651' => 'tar', 'TAR625G1131' => 'tar', 'TAR633G0962' => 'tar', 'TAR633G1729' => 'tar', 'TAR633G1864' => 'tar', 'TAR636G0221' => 'tar', 'TAR636G0314' => 'tar', 'TAR636G3202' => 'tar', 'THA.LOC104800805' => 'tha', 'THA.LOC104801096' => 'tha', 'THA.LOC104801555' => 'tha', 'THA.LOC104808491' => 'tha', 'THA.LOC104808595' => 'tha', 'THA.LOC104815985' => 'tha', 'THA.LOC104822250' => 'tha', 'THA.LOC104826071' => 'tha', 'Thecc.01G265200' => 'tca', 'Thecc.01G265300' => 'tca', 'Thecc.01G265700' => 'tca', 'Thecc.03G109100' => 'tca', 'Thecc.04G245900' => 'tca', 'Thecc.04G246000' => 'tca', 'Thhalv10003334m.g' => 'esa', 'Thhalv10005508m.g' => 'esa', 'Thhalv10005643m.g' => 'esa', 'Thhalv10007316m.g' => 'esa', 'Thhalv10009006m.g' => 'esa', 'Thhalv10009309m.g' => 'esa', 'Thhalv10014917m.g' => 'esa', 'Thhalv10014919m.g' => 'esa', 'Thhalv10015393m.g' => 'esa', 'Thhalv10016515m.g' => 'esa', 'Thhalv10029242m.g' => 'esa', 'TPR.G16654' => 'tpr', 'TPR.G20589' => 'tpr', 'TPR.G23029' => 'tpr', 'TPR.G27731' => 'tpr', 'TPR.G28889' => 'tpr', 'TPR.G28899' => 'tpr', 'TPR.G30846' => 'tpr', 'TPR.G5452' => 'tpr', 'TPR.G5713' => 'tpr', 'TPR.G9046' => 'tpr', 'TPR.G9061' => 'tpr', 'TWI09G1075' => 'twi', 'TWI12G0806' => 'twi', 'TWI18G0108' => 'twi', 'TWI53G1361' => 'twi', 'TWI73G0185' => 'twi', 'TWI73G0427' => 'twi', 'unitig_37.g12001' => 'ugi', 'unitig_747.g21660' => 'ugi', 'unitig_748.g7232' => 'ugi', 'unitig_748.g7315' => 'ugi', 'unitig_85.g27262' => 'ugi', 'unitig_92.g28220' => 'ugi', 'vmacro02632' => 'vma', 'vmacro08410' => 'vma', 'vmacro08411' => 'vma', 'vmacro15407' => 'vma', 'VMungo0251G3619' => 'vmu', 'VMungo0720G1204' => 'vmu', 'VMungo0720G1918' => 'vmu', 'VMungo0720G2387' => 'vmu', 'VMungo0720G2961' => 'vmu', 'VMungo1215G2154' => 'vmu', 'VMungo1383G2411' => 'vmu', 'Zm00001eb051130' => 'zma', 'Zm00001eb116830' => 'zma', 'Zm00001eb116850' => 'zma', 'Zm00001eb151740' => 'zma', 'Zm00001eb292360' => 'zma', 'Zm00001eb301640' => 'zma' ) $gf_id = 'HOM05D000856' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000856' ) $data_identifier = 'HOM05D000856' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 13, 'ath' => (int) 10, 'atr' => (int) 1, 'acertr' => (int) 8, 'cqu' => (int) 6, 'bca' => (int) 21, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 11, 'car' => (int) 9, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 8, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 5, 'fan' => (int) 16, 'fve' => (int) 6, 'gma' => (int) 11, 'ghi' => (int) 19, 'gra' => (int) 9, 'vvi' => (int) 7, 'han' => (int) 17, 'cav' => (int) 5, 'hma' => (int) 2, 'vpl' => (int) 2, 'sun' => (int) 7, 'lal' => (int) 9, 'lja' => (int) 5, 'lonja' => (int) 9, 'lsa' => (int) 5, 'mes' => (int) 8, 'mpo' => (int) 3, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 10, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 15, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 9, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 9, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 6, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 5, 'spa' => (int) 10, 'tar' => (int) 10, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 11, 'tpr' => (int) 11, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 4, 'vmu' => (int) 7, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb301640' $species_info = array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ) $local_species = 'csa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000856', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p00010' => 'bna', 'A03p04160' => 'bna', 'A03p17160' => 'bna', 'A04p23370' => 'bna', 'A05p14860' => 'bna', 'A08p37020' => 'bna', 'A09p08050' => 'bna', 'A09p66800' => 'bna', 'A09p67940' => 'bna', 'A10p02680' => 'bna', 'A10p05320' => 'bna', 'Aa31LG1G20560' => 'aar', 'Aa31LG1G20610' => 'aar', 'Aa31LG1G7810' => 'aar', 'Aa31LG5G3590' => 'aar', 'Aa31LG5G6140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3819' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4683' => 'aag', 'Actinidia04480' => 'ach', 'Actinidia05466' => 'ach', 'Actinidia08445' => 'ach', 'Actinidia21170' => 'ach', 'Actinidia24812' => 'ach', 'Actinidia24951' => 'ach', 'Actinidia40088' => 'ach', 'Ah.02g111660' => 'amhyb', 'Ah.11g048900' => 'amhyb', 'Ah.11g049910' => 'amhyb', 'AL1G13870' => 'aly', 'AL1G13880' => 'aly', 'AL1G16760' => 'aly', 'AL390U10020' => 'aly', 'AL4G25520' => 'aly', 'AL6G19890' => 'aly', 'AL6G19900' => 'aly', 'AL6G19910' => 'aly', 'AL8G40100' => 'aly', 'Aqoxy2G03562' => 'aox', 'Aqoxy5G00316' => 'aox', 'Aqoxy5G00926' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1628KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1H403S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2FU6SJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.882I6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8YRY2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YN1SN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AF70II' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZA8L1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F916KL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHRD8H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KTZ8QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S22EMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8M29T' => 'arhy', 'AT1G04270' => 'ath', 'AT1G04280' => 'ath', 'AT1G06750' => 'ath', 'AT1G33850' => 'ath', 'AT2G30630' => 'ath', 'AT5G09490' => 'ath', 'AT5G09500' => 'ath', 'AT5G09510' => 'ath', 'AT5G43640' => 'ath', 'AT5G63070' => 'ath', 'ATR0605G315' => 'atr', 'Atru.chr11.175' => 'acertr', 'Atru.chr11.653' => 'acertr', 'Atru.chr3.1616' => 'acertr', 'Atru.chr4.2230' => 'acertr', 'Atru.chr4.2232' => 'acertr', 'Atru.chr5.1598' => 'acertr', 'Atru.chr5.1600' => 'acertr', 'Atru.chr5.2188' => 'acertr', 'AUR62008326' => 'cqu', 'AUR62011922' => 'cqu', 'AUR62011924' => 'cqu', 'AUR62021771' => 'cqu', 'AUR62032237' => 'cqu', 'AUR62032240' => 'cqu', 'BcaB01g05572' => 'bca', 'BcaB02g10337' => 'bca', 'BcaB04g19944' => 'bca', 'BcaB05g21548' => 'bca', 'BcaB05g21549' => 'bca', 'BcaB05g23227' => 'bca', 'BcaB06g26256' => 'bca', 'BcaB06g26257' => 'bca', 'BcaB06g28379' => 'bca', 'BcaC02g11159' => 'bca', 'BcaC03g13258' => 'bca', 'BcaC03g13259' => 'bca', 'BcaC05g24456' => 'bca', 'BcaC05g24457' => 'bca', 'BcaC07g36922' => 'bca', 'BcaC07g36923' => 'bca', 'BcaC07g42050' => 'bca', 'BcaC07g42176' => 'bca', 'BcaC07g42195' => 'bca', 'BcaC07g42196' => 'bca', 'BcaNung06674' => 'bca', 'BolC2t06351H' => 'bol', 'BolC2t06352H' => 'bol', 'BolC3t12993H' => 'bol', 'BolC4t23525H' => 'bol', 'BolC4t27475H' => 'bol', 'BolC5t29025H' => 'bol', 'BolC5t29026H' => 'bol', 'BolC8t46898H' => 'bol', 'BolC8t46899H' => 'bol', 'BolC8t52630H' => 'bol', 'BolC8t52765H' => 'bol', 'BolC9t53824H' => 'bol', 'BraA03t09760Z' => 'bra', 'BraA03t10990Z' => 'bra', 'BraA05t20413Z' => 'bra', 'BraA08t35602Z' => 'bra', 'BraA09t36458Z' => 'bra', 'BraA09t42018Z' => 'bra', 'BraA09t42129Z' => 'bra', 'BraA10t42536Z' => 'bra', 'BraA10t42537Z' => 'bra', 'C01p10690' => 'bna', 'C02p03890' => 'bna', 'C02p03900' => 'bna', 'C03p04620' => 'bna', 'C04p19870' => 'bna', 'C04p59670' => 'bna', 'C05p02460' => 'bna', 'C05p02470' => 'bna', 'C08p00980' => 'bna', 'C08p00990' => 'bna', 'C08p51030' => 'bna', 'C08p52360' => 'bna', 'C09p09120' => 'bna', 'CAN.G19.15' => 'can', 'CAN.G251.10' => 'can', 'CAN.G251.9' => 'can', 'CAN.G398.24' => 'can', 'CAN.G410.32' => 'can', 'CAN.G881.2' => 'can', 'CANSAT01G3025' => 'cansat', 'CANSAT78G1211' => 'cansat', 'CANSAT78G1218' => 'cansat', 'CANSAT78G1521' => 'cansat', 'CANSAT78G1670' => 'cansat', 'CARHR003600' => 'chi', 'CARHR003610' => 'chi', 'CARHR006290' => 'chi', 'CARHR006430' => 'chi', 'CARHR124110' => 'chi', 'CARHR203870' => 'chi', 'CARHR203880' => 'chi', 'CARHR203890' => 'chi', 'CARHR276880' => 'chi', 'Carub.0001s0346' => 'cru', 'Carub.0001s0347' => 'cru', 'Carub.0001s0607' => 'cru', 'Carub.0003s2768' => 'cru', 'Carub.0003s2769' => 'cru', 'Carub.0004s1178' => 'cru', 'Carub.0006s0806' => 'cru', 'Carub.0006s0807' => 'cru', 'Carub.0006s0808' => 'cru', 'Carub.0008s0501' => 'cru', 'Carub.0008s2379' => 'cru', 'Ca_08655_v3' => 'car', 'Ca_08922_v3' => 'car', 'Ca_08923_v3' => 'car', 'Ca_09119_v3' => 'car', 'Ca_09703_v3' => 'car', 'Ca_09705_v3' => 'car', 'Ca_09835_v3' => 'car', 'Ca_26403_v3' => 'car', 'Ca_30719_v3' => 'car', 'CBR_g17958' => 'cbr', 'CBR_g40516' => 'cbr', 'Cc00_g05350' => 'ccan', 'Cc01_g18690' => 'ccan', 'Cc03_g04830' => 'ccan', 'Cc03_g04850' => 'ccan', 'CDE02G4469' => 'cde', 'CDE06G0883' => 'cde', 'CDE06G1295' => 'cde', 'CDE06G1390' => 'cde', 'CDE07G0584' => 'cde', 'CDE07G1084' => 'cde', 'CDE08G1259' => 'cde', 'Cfa002341' => 'cfa', 'Cfa024337' => 'cfa', 'Ciclev10004749m.g' => 'ccl', 'Ciclev10006127m.g' => 'ccl', 'Ciclev10019720m.g' => 'ccl', 'Ciclev10022652m.g' => 'ccl', 'CiPaw.01G190400' => 'cil', 'CiPaw.01G190500' => 'cil', 'CiPaw.02G116400' => 'cil', 'CiPaw.02G116500' => 'cil', 'CiPaw.04G183000' => 'cil', 'CiPaw.04G183300' => 'cil', 'ClCG05G004610' => 'cla', 'ClCG05G004620' => 'cla', 'ClCG06G006730' => 'cla', 'ClCG06G006740' => 'cla', 'ClCG11G003690' => 'cla', 'COL.COLO4_08276' => 'col', 'COL.COLO4_08277' => 'col', 'COL.COLO4_15787' => 'col', 'COL.COLO4_15789' => 'col', 'Cpa.g.c44815' => 'cpa', 'Cpa.g.sc52.144' => 'cpa', 'Cpa.g.sc58.46' => 'cpa', 'Cpa.g.sc58.47' => 'cpa', 'Cre08.g360900' => 'cre', 'CsaV3_2G013030' => 'csa', 'CsaV3_2G013050' => 'csa', 'CsaV3_2G015620' => 'csa', 'CsaV3_3G012590' => 'csa', 'CsaV3_3G012600' => 'csa', 'CSS0001641' => 'camsi', 'CSS0008310' => 'camsi', 'CSS0013011' => 'camsi', 'CSS0017147' => 'camsi', 'CSS0022970' => 'camsi', 'CSS0025655' => 'camsi', 'CSS0028665' => 'camsi', 'CSS0029117' => 'camsi', 'CSS0032024' => 'camsi', 'CSS0039681' => 'camsi', 'CSS0046516' => 'camsi', 'CSS0050307' => 'camsi', 'DCAR_005871' => 'dca', 'DCAR_007342' => 'dca', 'DCAR_024228' => 'dca', 'DCAR_027277' => 'dca', 'DCAR_030718' => 'dca', 'Dinv20287' => 'din', 'Dinv22461' => 'din', 'Dinv22464' => 'din', 'Dinv29912' => 'din', 'Dinv29913' => 'din', 'Dinv34580' => 'din', 'Dinv34582' => 'din', 'Dinv44632' => 'din', 'Duzib052G0266' => 'dzi', 'Duzib133G0907' => 'dzi', 'Duzib133G1034' => 'dzi', 'Duzib138G0207' => 'dzi', 'Duzib138G0491' => 'dzi', 'Duzib151G0812' => 'dzi', 'Duzib151G1166' => 'dzi', 'Duzib168G0192' => 'dzi', 'Duzib211G0077' => 'dzi', 'Duzib212G0429' => 'dzi', 'Duzib212G0472' => 'dzi', 'ECA233G2617' => 'eca', 'ECA236G4188' => 'eca', 'ECA240G0936' => 'eca', 'ECA240G1129' => 'eca', 'ECA247G0623' => 'eca', 'EL10Ac5g10451' => 'bvu', 'EL10Ac5g10453' => 'bvu', 'EL10Ac5g10894' => 'bvu', 'Eucgr.H00192' => 'egr', 'Eucgr.H00193' => 'egr', 'Eucgr.H00194' => 'egr', 'Eucgr.J01562' => 'egr', 'Eucgr.K03301' => 'egr', 'FAN02G0632' => 'fan', 'FAN05G5378' => 'fan', 'FAN09G3247' => 'fan', 'FAN12G0435' => 'fan', 'FAN12G2426' => 'fan', 'FAN14G1707' => 'fan', 'FAN14G4725' => 'fan', 'FAN15G2071' => 'fan', 'FAN17G3065' => 'fan', 'FAN19G1376' => 'fan', 'FAN20G0354' => 'fan', 'FAN20G2429' => 'fan', 'FAN20G2658' => 'fan', 'FAN24G2343' => 'fan', 'FAN27G2362' => 'fan', 'FAN28G1765' => 'fan', 'FvH4_1g16020' => 'fve', 'FvH4_2g04890' => 'fve', 'FvH4_2g22270' => 'fve', 'FvH4_4g02630' => 'fve', 'FvH4_4g02640' => 'fve', 'FvH4_6g02650' => 'fve', 'Glyma.02G140600' => 'gma', 'Glyma.03G159900' => 'gma', 'Glyma.05G234800' => 'gma', 'Glyma.07G269600' => 'gma', 'Glyma.08G042300' => 'gma', 'Glyma.10G033500' => 'gma', 'Glyma.10G185200' => 'gma', 'Glyma.17G004300' => 'gma', 'Glyma.19G161900' => 'gma', 'Glyma.20G205100' => 'gma', 'Glyma.20G205200' => 'gma', 'Gohir.A01G139101' => 'ghi', 'Gohir.A02G035600' => 'ghi', 'Gohir.A02G117901' => 'ghi', 'Gohir.A07G210100' => 'ghi', 'Gohir.A07G210200' => 'ghi', 'Gohir.A08G061100' => 'ghi', 'Gohir.A09G223000' => 'ghi', 'Gohir.A09G223100' => 'ghi', 'Gohir.A10G113900' => 'ghi', 'Gohir.A10G114000' => 'ghi', 'Gohir.D02G042300' => 'ghi', 'Gohir.D07G216100' => 'ghi', 'Gohir.D07G216200' => 'ghi', 'Gohir.D08G070400' => 'ghi', 'Gohir.D09G225000' => 'ghi', 'Gohir.D09G225100' => 'ghi', 'Gohir.D10G152300' => 'ghi', 'Gohir.D10G153200' => 'ghi', 'Gohir.D11G133701' => 'ghi', 'Gorai.004G074100' => 'gra', 'Gorai.005G046800' => 'gra', 'Gorai.006G246500' => 'gra', 'Gorai.006G246600' => 'gra', 'Gorai.007G142900' => 'gra', 'Gorai.011G171000' => 'gra', 'Gorai.011G171100' => 'gra', 'Gorai.013G104300' => 'gra', 'Gorai.013G104400' => 'gra', 'GSVIVG01000754001' => 'vvi', 'GSVIVG01000756001' => 'vvi', 'GSVIVG01010903001' => 'vvi', 'GSVIVG01017623001' => 'vvi', 'GSVIVG01018113001' => 'vvi', 'GSVIVG01018116001' => 'vvi', 'GSVIVG01018118001' => 'vvi', 'HanXRQChr03g0076211' => 'han', 'HanXRQChr03g0092431' => 'han', 'HanXRQChr03g0092441' => 'han', 'HanXRQChr03g0092591' => 'han', 'HanXRQChr03g0092671' => 'han', 'HanXRQChr03g0092681' => 'han', 'HanXRQChr03g0092691' => 'han', 'HanXRQChr03g0092701' => 'han', 'HanXRQChr03g0092721' => 'han', 'HanXRQChr03g0092731' => 'han', 'HanXRQChr04g0113681' => 'han', 'HanXRQChr10g0281371' => 'han', 'HanXRQChr11g0337141' => 'han', 'HanXRQChr13g0424521' => 'han', 'HanXRQChr13g0424531' => 'han', 'HanXRQChr13g0424541' => 'han', 'HanXRQChr16g0498221' => 'han', 'Haze_04377' => 'cav', 'Haze_11298' => 'cav', 'Haze_24547' => 'cav', 'Haze_24550' => 'cav', 'Haze_26587' => 'cav', 'Hma1.2p1_0650F.1_g195410' => 'hma', 'Hma1.2p1_0893F.1_g233470' => 'hma', 'HPP92_006508' => 'vpl', 'HPP92_024780' => 'vpl', 'Hund02688' => 'sun', 'Hund09380' => 'sun', 'Hund09381' => 'sun', 'Hund09832' => 'sun', 'Hund09833' => 'sun', 'Hund11351' => 'sun', 'Hund11513' => 'sun', 'Lalb_Chr06g0162591' => 'lal', 'Lalb_Chr06g0162601' => 'lal', 'Lalb_Chr06g0169321' => 'lal', 'Lalb_Chr09g0330951' => 'lal', 'Lalb_Chr16g0387631' => 'lal', 'Lalb_Chr21g0306241' => 'lal', 'Lalb_Chr25g0290051' => 'lal', 'Lalb_Chr25g0290061' => 'lal', 'Lalb_Chr25g0290071' => 'lal', 'Lj1g0003876' => 'lja', 'Lj1P1207T36' => 'lonja', 'Lj2C1156G12' => 'lonja', 'Lj3A793G39' => 'lonja', 'Lj3C580G2' => 'lonja', 'Lj3C780G2' => 'lonja', 'Lj3C780T4' => 'lonja', 'Lj3C793G9' => 'lonja', 'Lj4g0012960' => 'lja', 'Lj5g0021252' => 'lja', 'Lj5g0021484' => 'lja', 'Lj5g0024528' => 'lja', 'Lj6A399T12' => 'lonja', 'Lj6A656G65' => 'lonja', 'Lsat_1_v5_gn_3_125500' => 'lsa', 'Lsat_1_v5_gn_3_125540' => 'lsa', 'Lsat_1_v5_gn_5_72701' => 'lsa', 'Lsat_1_v5_gn_8_91560' => 'lsa', 'Lsat_1_v5_gn_9_9640' => 'lsa', 'Manes.01G200600' => 'mes', 'Manes.01G200700' => 'mes', 'Manes.03G168900' => 'mes', 'Manes.03G169000' => 'mes', 'Manes.05G085801' => 'mes', 'Manes.05G086200' => 'mes', 'Manes.15G036700' => 'mes', 'Manes.15G036900' => 'mes', 'Mapoly0004s0172' => 'mpo', 'Mapoly0023s0001' => 'mpo', 'Mapoly0142s0012' => 'mpo', 'MBI01_g32854_MAGBIO' => 'mbi', 'MBI11_g24427_MAGBIO' => 'mbi', 'MBI11_g47319_MAGBIO' => 'mbi', 'MCO01G433' => 'mco', 'MD00G1187800' => 'mdo', 'MD04G1226500' => 'mdo', 'MD05G1203900' => 'mdo', 'MD10G1191100' => 'mdo', 'MD12G1243500' => 'mdo', 'MD13G1207000' => 'mdo', 'MD13G1207100' => 'mdo', 'MD16G1208600' => 'mdo', 'Medtr1g050352' => 'mtr', 'Medtr1g070385' => 'mtr', 'Medtr1g070450' => 'mtr', 'Medtr1g075200' => 'mtr', 'Medtr1g075250' => 'mtr', 'Medtr1g075260' => 'mtr', 'Medtr1g475250' => 'mtr', 'Medtr4g075450' => 'mtr', 'Medtr7g096300' => 'mtr', 'Medtr8g105110' => 'mtr', 'MELO3C006470.2' => 'cme', 'MELO3C006471.2' => 'cme', 'MELO3C020772.2' => 'cme', 'MELO3C026780.2' => 'cme', 'MELO3C026781.2' => 'cme', 'Migut.D00390' => 'egut', 'Migut.G00435' => 'egut', 'Migut.G00436' => 'egut', 'Migut.G00718' => 'egut', 'MSTRG.21891' => 'ama', 'MSTRG.26910' => 'ama', 'MSTRG.4099' => 'ama', 'MSTRG.9925' => 'ama', 'Nitab4.5_0000165g0010' => 'nta', 'Nitab4.5_0000209g0180' => 'nta', 'Nitab4.5_0000244g0440' => 'nta', 'Nitab4.5_0000525g0220' => 'nta', 'Nitab4.5_0001597g0020' => 'nta', 'Nitab4.5_0001878g0040' => 'nta', 'Nitab4.5_0001878g0060' => 'nta', 'Nitab4.5_0002838g0100' => 'nta', 'Nitab4.5_0002838g0120' => 'nta', 'Nitab4.5_0004798g0030' => 'nta', 'Nitab4.5_0005420g0010' => 'nta', 'Nitab4.5_0005507g0010' => 'nta', 'Nitab4.5_0005574g0020' => 'nta', 'Nitab4.5_0005838g0010' => 'nta', 'Nitab4.5_0010580g0020' => 'nta', 'Nn1g02599' => 'nnu', 'Nn1g02608' => 'nnu', 'Nn3g17742' => 'nnu', 'Nn3g19534' => 'nnu', 'Nn3g19535' => 'nnu', 'Oeu008790.1' => 'oeu', 'Oeu008792.1' => 'oeu', 'Oeu032590.1' => 'oeu', 'Oeu035349.1' => 'oeu', 'Oeu049791.1' => 'oeu', 'Os01g0774500' => 'osa', 'Os03g0628800' => 'osa', 'Os03g0798600' => 'osa', 'Os05g0508800' => 'osa', 'Peaxi162Scf00036g02018' => 'pax', 'Peaxi162Scf00578g00032' => 'pax', 'Peaxi162Scf00578g00317' => 'pax', 'Peaxi162Scf00785g00114' => 'pax', 'Peaxi162Scf00813g00119' => 'pax', 'Peaxi162Scf00906g00227' => 'pax', 'PGR004G0875' => 'pgr', 'PGR004G2424' => 'pgr', 'PGR031G1239' => 'pgr', 'PGR031G2474' => 'pgr', 'PGR044G0423' => 'pgr', 'PGSC0003DMG400001128' => 'stu', 'PGSC0003DMG400007336' => 'stu', 'PGSC0003DMG400016318' => 'stu', 'PGSC0003DMG400016319' => 'stu', 'PGSC0003DMG400018074' => 'stu', 'Phvul.001G157700' => 'pvu', 'Phvul.002G148550' => 'pvu', 'Phvul.002G320200' => 'pvu', 'Phvul.003G089200' => 'pvu', 'Phvul.007G126000' => 'pvu', 'Phvul.007G126100' => 'pvu', 'Phvul.007G178000' => 'pvu', 'Phvul.007G178200' => 'pvu', 'Potri.002G043000' => 'ptr', 'Potri.002G043200' => 'ptr', 'Potri.003G123750' => 'ptr', 'Potri.005G055401' => 'ptr', 'Potri.005G219700' => 'ptr', 'Potri.005G220000' => 'ptr', 'Potri.008G161901' => 'ptr', 'Potri.008G162000' => 'ptr', 'Potri.008G162400' => 'ptr', 'Potri.010G076900' => 'ptr', 'Pp3c12_9180' => 'ppa', 'Pp3c13_19770' => 'ppa', 'Pp3c14_22950' => 'ppa', 'Pp3c16_12160' => 'ppa', 'Pp3c27_7820' => 'ppa', 'Pp3c2_3490' => 'ppa', 'Pp3c3_23700' => 'ppa', 'Pp3c3_36520' => 'ppa', 'Pp3c4_15250' => 'ppa', 'PRCOL_00007002' => 'pco', 'Prupe.1G030600' => 'ppe', 'Prupe.1G030700' => 'ppe', 'Prupe.6G345200' => 'ppe', 'Prupe.8G230300' => 'ppe', 'Prupe.8G230500' => 'ppe', 'Psat3g059600' => 'psa', 'Psat5g200920' => 'psa', 'Psat6g056440' => 'psa', 'Psat6g057360' => 'psa', 'Psat6g134120' => 'psa', 'Psat6g134160' => 'psa', 'Psat7g008640' => 'psa', 'Psat7g185240' => 'psa', 'PSO017G1330' => 'pso', 'PSO063G6097' => 'pso', 'PSO170G0835' => 'pso', 'PSO170G2499' => 'pso', 'PSO210G5058' => 'pso', 'PSO210G6154' => 'pso', 'PSO585G0031' => 'pso', 'PSO832G0264' => 'pso', 'PSO832G4288' => 'pso', 'QL03p027355' => 'qlo', 'QL03p027430' => 'qlo', 'QL04p081380' => 'qlo', 'QL06p015642' => 'qlo', 'QL06p015650' => 'qlo', 'QL06p015686' => 'qlo', 'QL12p042927' => 'qlo', 'QL93p1863_0035' => 'qlo', 'RcHm_v2.0_Chr3g0450581' => 'rch', 'RcHm_v2.0_Chr4g0390371' => 'rch', 'RcHm_v2.0_Chr4g0390381' => 'rch', 'RcHm_v2.0_Chr4g0390491' => 'rch', 'RcHm_v2.0_Chr4g0390501' => 'rch', 'RcHm_v2.0_Chr6g0289231' => 'rch', 'Rhsim04G0190400' => 'rsi', 'Rhsim04G0190500' => 'rsi', 'Rhsim04G0190600' => 'rsi', 'Rhsim13G0031400' => 'rsi', 'Rhsim13G0165600' => 'rsi', 'RhsimUnG0114600' => 'rsi', 'RhsimUnG0114700' => 'rsi', 'Sabra02G0034800' => 'sbr', 'Sabra02G0035100' => 'sbr', 'Sabra05G0168600' => 'sbr', 'Sabra05G0168800' => 'sbr', 'Sabra08G0123700' => 'sbr', 'Sabra10G0031900' => 'sbr', 'Sabra13G0039000' => 'sbr', 'SalBow2G0782' => 'sbo', 'SalBow2G1403' => 'sbo', 'SalBow4G0074' => 'sbo', 'SalBow4G2635' => 'sbo', 'SalBow5G3010' => 'sbo', 'Sc05g0000870' => 'sci', 'Sc05g0000890' => 'sci', 'Sc13g0005000' => 'sci', 'Sc13g0005030' => 'sci', 'Sc19g0003790' => 'sci', 'Sc19g0003800' => 'sci', 'Sed0003467' => 'sed', 'Sed0009355' => 'sed', 'Sed0009894' => 'sed', 'Sed0011972' => 'sed', 'Sed0021483' => 'sed', 'Sed0021750' => 'sed', 'Sed0026279' => 'sed', 'SEGI_05312' => 'sgi', 'SEGI_10112' => 'sgi', 'SEGI_15835' => 'sgi', 'SEGI_30386' => 'sgi', 'SEGI_34122' => 'sgi', 'SEGI_35063' => 'sgi', 'SGA_v2.0_scaffold101G29794' => 'sas', 'SGA_v2.0_scaffold1G00573' => 'sas', 'SGA_v2.0_scaffold79G25637' => 'sas', 'SGA_v2.0_scaffold88G27283' => 'sas', 'SGA_v2.0_scaffold88G27285' => 'sas', 'SGA_v2.0_scaffold88G27331' => 'sas', 'SHI09937' => 'shi', 'SMO119G0302' => 'smo', 'SMO137G0231' => 'smo', 'SMO367G1151' => 'smo', 'Solyc02g082000.3' => 'sly', 'Solyc06g031670.3' => 'sly', 'Solyc06g053810.3' => 'sly', 'Solyc07g025457.1' => 'sly', 'Solyc08g059740.1' => 'sly', 'Solyc08g059750.3' => 'sly', 'Solyc09g083370.3' => 'sly', 'Solyc12g038950.3' => 'sly', 'Sopen02g026630' => 'spe', 'Sopen06g018930' => 'spe', 'Sopen06g018940' => 'spe', 'Sopen08g009460' => 'spe', 'Sopen09g032290' => 'spe', 'Sp1g03080' => 'spa', 'Sp1g03090' => 'spa', 'Sp1g05480' => 'spa', 'Sp2g07860' => 'spa', 'Sp2g08430' => 'spa', 'Sp2g08440' => 'spa', 'Sp2g26200' => 'spa', 'Sp4g13170' => 'spa', 'Sp6g33840' => 'spa', 'SpUn1204_0010' => 'spa', 'TAR365G0908' => 'tar', 'TAR381G1270' => 'tar', 'TAR381G1651' => 'tar', 'TAR625G1131' => 'tar', 'TAR633G0962' => 'tar', 'TAR633G1729' => 'tar', 'TAR633G1864' => 'tar', 'TAR636G0221' => 'tar', 'TAR636G0314' => 'tar', 'TAR636G3202' => 'tar', 'THA.LOC104800805' => 'tha', 'THA.LOC104801096' => 'tha', 'THA.LOC104801555' => 'tha', 'THA.LOC104808491' => 'tha', 'THA.LOC104808595' => 'tha', 'THA.LOC104815985' => 'tha', 'THA.LOC104822250' => 'tha', 'THA.LOC104826071' => 'tha', 'Thecc.01G265200' => 'tca', 'Thecc.01G265300' => 'tca', 'Thecc.01G265700' => 'tca', 'Thecc.03G109100' => 'tca', 'Thecc.04G245900' => 'tca', 'Thecc.04G246000' => 'tca', 'Thhalv10003334m.g' => 'esa', 'Thhalv10005508m.g' => 'esa', 'Thhalv10005643m.g' => 'esa', 'Thhalv10007316m.g' => 'esa', 'Thhalv10009006m.g' => 'esa', 'Thhalv10009309m.g' => 'esa', 'Thhalv10014917m.g' => 'esa', 'Thhalv10014919m.g' => 'esa', 'Thhalv10015393m.g' => 'esa', 'Thhalv10016515m.g' => 'esa', 'Thhalv10029242m.g' => 'esa', 'TPR.G16654' => 'tpr', 'TPR.G20589' => 'tpr', 'TPR.G23029' => 'tpr', 'TPR.G27731' => 'tpr', 'TPR.G28889' => 'tpr', 'TPR.G28899' => 'tpr', 'TPR.G30846' => 'tpr', 'TPR.G5452' => 'tpr', 'TPR.G5713' => 'tpr', 'TPR.G9046' => 'tpr', 'TPR.G9061' => 'tpr', 'TWI09G1075' => 'twi', 'TWI12G0806' => 'twi', 'TWI18G0108' => 'twi', 'TWI53G1361' => 'twi', 'TWI73G0185' => 'twi', 'TWI73G0427' => 'twi', 'unitig_37.g12001' => 'ugi', 'unitig_747.g21660' => 'ugi', 'unitig_748.g7232' => 'ugi', 'unitig_748.g7315' => 'ugi', 'unitig_85.g27262' => 'ugi', 'unitig_92.g28220' => 'ugi', 'vmacro02632' => 'vma', 'vmacro08410' => 'vma', 'vmacro08411' => 'vma', 'vmacro15407' => 'vma', 'VMungo0251G3619' => 'vmu', 'VMungo0720G1204' => 'vmu', 'VMungo0720G1918' => 'vmu', 'VMungo0720G2387' => 'vmu', 'VMungo0720G2961' => 'vmu', 'VMungo1215G2154' => 'vmu', 'VMungo1383G2411' => 'vmu', 'Zm00001eb051130' => 'zma', 'Zm00001eb116830' => 'zma', 'Zm00001eb116850' => 'zma', 'Zm00001eb151740' => 'zma', 'Zm00001eb292360' => 'zma', 'Zm00001eb301640' => 'zma' ), 'gf_id' => 'HOM05D000856', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000856' ), 'data_identifier' => 'HOM05D000856', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000856', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p00010' => 'bna', 'A03p04160' => 'bna', 'A03p17160' => 'bna', 'A04p23370' => 'bna', 'A05p14860' => 'bna', 'A08p37020' => 'bna', 'A09p08050' => 'bna', 'A09p66800' => 'bna', 'A09p67940' => 'bna', 'A10p02680' => 'bna', 'A10p05320' => 'bna', 'Aa31LG1G20560' => 'aar', 'Aa31LG1G20610' => 'aar', 'Aa31LG1G7810' => 'aar', 'Aa31LG5G3590' => 'aar', 'Aa31LG5G6140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3819' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4683' => 'aag', 'Actinidia04480' => 'ach', 'Actinidia05466' => 'ach', 'Actinidia08445' => 'ach', 'Actinidia21170' => 'ach', 'Actinidia24812' => 'ach', 'Actinidia24951' => 'ach', 'Actinidia40088' => 'ach', 'Ah.02g111660' => 'amhyb', 'Ah.11g048900' => 'amhyb', 'Ah.11g049910' => 'amhyb', 'AL1G13870' => 'aly', 'AL1G13880' => 'aly', 'AL1G16760' => 'aly', 'AL390U10020' => 'aly', 'AL4G25520' => 'aly', 'AL6G19890' => 'aly', 'AL6G19900' => 'aly', 'AL6G19910' => 'aly', 'AL8G40100' => 'aly', 'Aqoxy2G03562' => 'aox', 'Aqoxy5G00316' => 'aox', 'Aqoxy5G00926' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1628KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1H403S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2FU6SJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.882I6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8YRY2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YN1SN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AF70II' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZA8L1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F916KL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHRD8H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KTZ8QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S22EMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8M29T' => 'arhy', 'AT1G04270' => 'ath', 'AT1G04280' => 'ath', 'AT1G06750' => 'ath', 'AT1G33850' => 'ath', 'AT2G30630' => 'ath', 'AT5G09490' => 'ath', 'AT5G09500' => 'ath', 'AT5G09510' => 'ath', 'AT5G43640' => 'ath', 'AT5G63070' => 'ath', 'ATR0605G315' => 'atr', 'Atru.chr11.175' => 'acertr', 'Atru.chr11.653' => 'acertr', 'Atru.chr3.1616' => 'acertr', 'Atru.chr4.2230' => 'acertr', 'Atru.chr4.2232' => 'acertr', 'Atru.chr5.1598' => 'acertr', 'Atru.chr5.1600' => 'acertr', 'Atru.chr5.2188' => 'acertr', 'AUR62008326' => 'cqu', 'AUR62011922' => 'cqu', 'AUR62011924' => 'cqu', 'AUR62021771' => 'cqu', 'AUR62032237' => 'cqu', 'AUR62032240' => 'cqu', 'BcaB01g05572' => 'bca', 'BcaB02g10337' => 'bca', 'BcaB04g19944' => 'bca', 'BcaB05g21548' => 'bca', 'BcaB05g21549' => 'bca', 'BcaB05g23227' => 'bca', 'BcaB06g26256' => 'bca', 'BcaB06g26257' => 'bca', 'BcaB06g28379' => 'bca', 'BcaC02g11159' => 'bca', 'BcaC03g13258' => 'bca', 'BcaC03g13259' => 'bca', 'BcaC05g24456' => 'bca', 'BcaC05g24457' => 'bca', 'BcaC07g36922' => 'bca', 'BcaC07g36923' => 'bca', 'BcaC07g42050' => 'bca', 'BcaC07g42176' => 'bca', 'BcaC07g42195' => 'bca', 'BcaC07g42196' => 'bca', 'BcaNung06674' => 'bca', 'BolC2t06351H' => 'bol', 'BolC2t06352H' => 'bol', 'BolC3t12993H' => 'bol', 'BolC4t23525H' => 'bol', 'BolC4t27475H' => 'bol', 'BolC5t29025H' => 'bol', 'BolC5t29026H' => 'bol', 'BolC8t46898H' => 'bol', 'BolC8t46899H' => 'bol', 'BolC8t52630H' => 'bol', 'BolC8t52765H' => 'bol', 'BolC9t53824H' => 'bol', 'BraA03t09760Z' => 'bra', 'BraA03t10990Z' => 'bra', 'BraA05t20413Z' => 'bra', 'BraA08t35602Z' => 'bra', 'BraA09t36458Z' => 'bra', 'BraA09t42018Z' => 'bra', 'BraA09t42129Z' => 'bra', 'BraA10t42536Z' => 'bra', 'BraA10t42537Z' => 'bra', 'C01p10690' => 'bna', 'C02p03890' => 'bna', 'C02p03900' => 'bna', 'C03p04620' => 'bna', 'C04p19870' => 'bna', 'C04p59670' => 'bna', 'C05p02460' => 'bna', 'C05p02470' => 'bna', 'C08p00980' => 'bna', 'C08p00990' => 'bna', 'C08p51030' => 'bna', 'C08p52360' => 'bna', 'C09p09120' => 'bna', 'CAN.G19.15' => 'can', 'CAN.G251.10' => 'can', 'CAN.G251.9' => 'can', 'CAN.G398.24' => 'can', 'CAN.G410.32' => 'can', 'CAN.G881.2' => 'can', 'CANSAT01G3025' => 'cansat', 'CANSAT78G1211' => 'cansat', 'CANSAT78G1218' => 'cansat', 'CANSAT78G1521' => 'cansat', 'CANSAT78G1670' => 'cansat', 'CARHR003600' => 'chi', 'CARHR003610' => 'chi', 'CARHR006290' => 'chi', 'CARHR006430' => 'chi', 'CARHR124110' => 'chi', 'CARHR203870' => 'chi', 'CARHR203880' => 'chi', 'CARHR203890' => 'chi', 'CARHR276880' => 'chi', 'Carub.0001s0346' => 'cru', 'Carub.0001s0347' => 'cru', 'Carub.0001s0607' => 'cru', 'Carub.0003s2768' => 'cru', 'Carub.0003s2769' => 'cru', 'Carub.0004s1178' => 'cru', 'Carub.0006s0806' => 'cru', 'Carub.0006s0807' => 'cru', 'Carub.0006s0808' => 'cru', 'Carub.0008s0501' => 'cru', 'Carub.0008s2379' => 'cru', 'Ca_08655_v3' => 'car', 'Ca_08922_v3' => 'car', 'Ca_08923_v3' => 'car', 'Ca_09119_v3' => 'car', 'Ca_09703_v3' => 'car', 'Ca_09705_v3' => 'car', 'Ca_09835_v3' => 'car', 'Ca_26403_v3' => 'car', 'Ca_30719_v3' => 'car', 'CBR_g17958' => 'cbr', 'CBR_g40516' => 'cbr', 'Cc00_g05350' => 'ccan', 'Cc01_g18690' => 'ccan', 'Cc03_g04830' => 'ccan', 'Cc03_g04850' => 'ccan', 'CDE02G4469' => 'cde', 'CDE06G0883' => 'cde', 'CDE06G1295' => 'cde', 'CDE06G1390' => 'cde', 'CDE07G0584' => 'cde', 'CDE07G1084' => 'cde', 'CDE08G1259' => 'cde', 'Cfa002341' => 'cfa', 'Cfa024337' => 'cfa', 'Ciclev10004749m.g' => 'ccl', 'Ciclev10006127m.g' => 'ccl', 'Ciclev10019720m.g' => 'ccl', 'Ciclev10022652m.g' => 'ccl', 'CiPaw.01G190400' => 'cil', 'CiPaw.01G190500' => 'cil', 'CiPaw.02G116400' => 'cil', 'CiPaw.02G116500' => 'cil', 'CiPaw.04G183000' => 'cil', 'CiPaw.04G183300' => 'cil', 'ClCG05G004610' => 'cla', 'ClCG05G004620' => 'cla', 'ClCG06G006730' => 'cla', 'ClCG06G006740' => 'cla', 'ClCG11G003690' => 'cla', 'COL.COLO4_08276' => 'col', 'COL.COLO4_08277' => 'col', 'COL.COLO4_15787' => 'col', 'COL.COLO4_15789' => 'col', 'Cpa.g.c44815' => 'cpa', 'Cpa.g.sc52.144' => 'cpa', 'Cpa.g.sc58.46' => 'cpa', 'Cpa.g.sc58.47' => 'cpa', 'Cre08.g360900' => 'cre', 'CsaV3_2G013030' => 'csa', 'CsaV3_2G013050' => 'csa', 'CsaV3_2G015620' => 'csa', 'CsaV3_3G012590' => 'csa', 'CsaV3_3G012600' => 'csa', 'CSS0001641' => 'camsi', 'CSS0008310' => 'camsi', 'CSS0013011' => 'camsi', 'CSS0017147' => 'camsi', 'CSS0022970' => 'camsi', 'CSS0025655' => 'camsi', 'CSS0028665' => 'camsi', 'CSS0029117' => 'camsi', 'CSS0032024' => 'camsi', 'CSS0039681' => 'camsi', 'CSS0046516' => 'camsi', 'CSS0050307' => 'camsi', 'DCAR_005871' => 'dca', 'DCAR_007342' => 'dca', 'DCAR_024228' => 'dca', 'DCAR_027277' => 'dca', 'DCAR_030718' => 'dca', 'Dinv20287' => 'din', 'Dinv22461' => 'din', 'Dinv22464' => 'din', 'Dinv29912' => 'din', 'Dinv29913' => 'din', 'Dinv34580' => 'din', 'Dinv34582' => 'din', 'Dinv44632' => 'din', 'Duzib052G0266' => 'dzi', 'Duzib133G0907' => 'dzi', 'Duzib133G1034' => 'dzi', 'Duzib138G0207' => 'dzi', 'Duzib138G0491' => 'dzi', 'Duzib151G0812' => 'dzi', 'Duzib151G1166' => 'dzi', 'Duzib168G0192' => 'dzi', 'Duzib211G0077' => 'dzi', 'Duzib212G0429' => 'dzi', 'Duzib212G0472' => 'dzi', 'ECA233G2617' => 'eca', 'ECA236G4188' => 'eca', 'ECA240G0936' => 'eca', 'ECA240G1129' => 'eca', 'ECA247G0623' => 'eca', 'EL10Ac5g10451' => 'bvu', 'EL10Ac5g10453' => 'bvu', 'EL10Ac5g10894' => 'bvu', 'Eucgr.H00192' => 'egr', 'Eucgr.H00193' => 'egr', 'Eucgr.H00194' => 'egr', 'Eucgr.J01562' => 'egr', 'Eucgr.K03301' => 'egr', 'FAN02G0632' => 'fan', 'FAN05G5378' => 'fan', 'FAN09G3247' => 'fan', 'FAN12G0435' => 'fan', 'FAN12G2426' => 'fan', 'FAN14G1707' => 'fan', 'FAN14G4725' => 'fan', 'FAN15G2071' => 'fan', 'FAN17G3065' => 'fan', 'FAN19G1376' => 'fan', 'FAN20G0354' => 'fan', 'FAN20G2429' => 'fan', 'FAN20G2658' => 'fan', 'FAN24G2343' => 'fan', 'FAN27G2362' => 'fan', 'FAN28G1765' => 'fan', 'FvH4_1g16020' => 'fve', 'FvH4_2g04890' => 'fve', 'FvH4_2g22270' => 'fve', 'FvH4_4g02630' => 'fve', 'FvH4_4g02640' => 'fve', 'FvH4_6g02650' => 'fve', 'Glyma.02G140600' => 'gma', 'Glyma.03G159900' => 'gma', 'Glyma.05G234800' => 'gma', 'Glyma.07G269600' => 'gma', 'Glyma.08G042300' => 'gma', 'Glyma.10G033500' => 'gma', 'Glyma.10G185200' => 'gma', 'Glyma.17G004300' => 'gma', 'Glyma.19G161900' => 'gma', 'Glyma.20G205100' => 'gma', 'Glyma.20G205200' => 'gma', 'Gohir.A01G139101' => 'ghi', 'Gohir.A02G035600' => 'ghi', 'Gohir.A02G117901' => 'ghi', 'Gohir.A07G210100' => 'ghi', 'Gohir.A07G210200' => 'ghi', 'Gohir.A08G061100' => 'ghi', 'Gohir.A09G223000' => 'ghi', 'Gohir.A09G223100' => 'ghi', 'Gohir.A10G113900' => 'ghi', 'Gohir.A10G114000' => 'ghi', 'Gohir.D02G042300' => 'ghi', 'Gohir.D07G216100' => 'ghi', 'Gohir.D07G216200' => 'ghi', 'Gohir.D08G070400' => 'ghi', 'Gohir.D09G225000' => 'ghi', 'Gohir.D09G225100' => 'ghi', 'Gohir.D10G152300' => 'ghi', 'Gohir.D10G153200' => 'ghi', 'Gohir.D11G133701' => 'ghi', 'Gorai.004G074100' => 'gra', 'Gorai.005G046800' => 'gra', 'Gorai.006G246500' => 'gra', 'Gorai.006G246600' => 'gra', 'Gorai.007G142900' => 'gra', 'Gorai.011G171000' => 'gra', 'Gorai.011G171100' => 'gra', 'Gorai.013G104300' => 'gra', 'Gorai.013G104400' => 'gra', 'GSVIVG01000754001' => 'vvi', 'GSVIVG01000756001' => 'vvi', 'GSVIVG01010903001' => 'vvi', 'GSVIVG01017623001' => 'vvi', 'GSVIVG01018113001' => 'vvi', 'GSVIVG01018116001' => 'vvi', 'GSVIVG01018118001' => 'vvi', 'HanXRQChr03g0076211' => 'han', 'HanXRQChr03g0092431' => 'han', 'HanXRQChr03g0092441' => 'han', 'HanXRQChr03g0092591' => 'han', 'HanXRQChr03g0092671' => 'han', 'HanXRQChr03g0092681' => 'han', 'HanXRQChr03g0092691' => 'han', 'HanXRQChr03g0092701' => 'han', 'HanXRQChr03g0092721' => 'han', 'HanXRQChr03g0092731' => 'han', 'HanXRQChr04g0113681' => 'han', 'HanXRQChr10g0281371' => 'han', 'HanXRQChr11g0337141' => 'han', 'HanXRQChr13g0424521' => 'han', 'HanXRQChr13g0424531' => 'han', 'HanXRQChr13g0424541' => 'han', 'HanXRQChr16g0498221' => 'han', 'Haze_04377' => 'cav', 'Haze_11298' => 'cav', 'Haze_24547' => 'cav', 'Haze_24550' => 'cav', 'Haze_26587' => 'cav', 'Hma1.2p1_0650F.1_g195410' => 'hma', 'Hma1.2p1_0893F.1_g233470' => 'hma', 'HPP92_006508' => 'vpl', 'HPP92_024780' => 'vpl', 'Hund02688' => 'sun', 'Hund09380' => 'sun', 'Hund09381' => 'sun', 'Hund09832' => 'sun', 'Hund09833' => 'sun', 'Hund11351' => 'sun', 'Hund11513' => 'sun', 'Lalb_Chr06g0162591' => 'lal', 'Lalb_Chr06g0162601' => 'lal', 'Lalb_Chr06g0169321' => 'lal', 'Lalb_Chr09g0330951' => 'lal', 'Lalb_Chr16g0387631' => 'lal', 'Lalb_Chr21g0306241' => 'lal', 'Lalb_Chr25g0290051' => 'lal', 'Lalb_Chr25g0290061' => 'lal', 'Lalb_Chr25g0290071' => 'lal', 'Lj1g0003876' => 'lja', 'Lj1P1207T36' => 'lonja', 'Lj2C1156G12' => 'lonja', 'Lj3A793G39' => 'lonja', 'Lj3C580G2' => 'lonja', 'Lj3C780G2' => 'lonja', 'Lj3C780T4' => 'lonja', 'Lj3C793G9' => 'lonja', 'Lj4g0012960' => 'lja', 'Lj5g0021252' => 'lja', 'Lj5g0021484' => 'lja', 'Lj5g0024528' => 'lja', 'Lj6A399T12' => 'lonja', 'Lj6A656G65' => 'lonja', 'Lsat_1_v5_gn_3_125500' => 'lsa', 'Lsat_1_v5_gn_3_125540' => 'lsa', 'Lsat_1_v5_gn_5_72701' => 'lsa', 'Lsat_1_v5_gn_8_91560' => 'lsa', 'Lsat_1_v5_gn_9_9640' => 'lsa', 'Manes.01G200600' => 'mes', 'Manes.01G200700' => 'mes', 'Manes.03G168900' => 'mes', 'Manes.03G169000' => 'mes', 'Manes.05G085801' => 'mes', 'Manes.05G086200' => 'mes', 'Manes.15G036700' => 'mes', 'Manes.15G036900' => 'mes', 'Mapoly0004s0172' => 'mpo', 'Mapoly0023s0001' => 'mpo', 'Mapoly0142s0012' => 'mpo', 'MBI01_g32854_MAGBIO' => 'mbi', 'MBI11_g24427_MAGBIO' => 'mbi', 'MBI11_g47319_MAGBIO' => 'mbi', 'MCO01G433' => 'mco', 'MD00G1187800' => 'mdo', 'MD04G1226500' => 'mdo', 'MD05G1203900' => 'mdo', 'MD10G1191100' => 'mdo', 'MD12G1243500' => 'mdo', 'MD13G1207000' => 'mdo', 'MD13G1207100' => 'mdo', 'MD16G1208600' => 'mdo', 'Medtr1g050352' => 'mtr', 'Medtr1g070385' => 'mtr', 'Medtr1g070450' => 'mtr', 'Medtr1g075200' => 'mtr', 'Medtr1g075250' => 'mtr', 'Medtr1g075260' => 'mtr', 'Medtr1g475250' => 'mtr', 'Medtr4g075450' => 'mtr', 'Medtr7g096300' => 'mtr', 'Medtr8g105110' => 'mtr', 'MELO3C006470.2' => 'cme', 'MELO3C006471.2' => 'cme', 'MELO3C020772.2' => 'cme', 'MELO3C026780.2' => 'cme', 'MELO3C026781.2' => 'cme', 'Migut.D00390' => 'egut', 'Migut.G00435' => 'egut', 'Migut.G00436' => 'egut', 'Migut.G00718' => 'egut', 'MSTRG.21891' => 'ama', 'MSTRG.26910' => 'ama', 'MSTRG.4099' => 'ama', 'MSTRG.9925' => 'ama', 'Nitab4.5_0000165g0010' => 'nta', 'Nitab4.5_0000209g0180' => 'nta', 'Nitab4.5_0000244g0440' => 'nta', 'Nitab4.5_0000525g0220' => 'nta', 'Nitab4.5_0001597g0020' => 'nta', 'Nitab4.5_0001878g0040' => 'nta', 'Nitab4.5_0001878g0060' => 'nta', 'Nitab4.5_0002838g0100' => 'nta', 'Nitab4.5_0002838g0120' => 'nta', 'Nitab4.5_0004798g0030' => 'nta', 'Nitab4.5_0005420g0010' => 'nta', 'Nitab4.5_0005507g0010' => 'nta', 'Nitab4.5_0005574g0020' => 'nta', 'Nitab4.5_0005838g0010' => 'nta', 'Nitab4.5_0010580g0020' => 'nta', 'Nn1g02599' => 'nnu', 'Nn1g02608' => 'nnu', 'Nn3g17742' => 'nnu', 'Nn3g19534' => 'nnu', 'Nn3g19535' => 'nnu', 'Oeu008790.1' => 'oeu', 'Oeu008792.1' => 'oeu', 'Oeu032590.1' => 'oeu', 'Oeu035349.1' => 'oeu', 'Oeu049791.1' => 'oeu', 'Os01g0774500' => 'osa', 'Os03g0628800' => 'osa', 'Os03g0798600' => 'osa', 'Os05g0508800' => 'osa', 'Peaxi162Scf00036g02018' => 'pax', 'Peaxi162Scf00578g00032' => 'pax', 'Peaxi162Scf00578g00317' => 'pax', 'Peaxi162Scf00785g00114' => 'pax', 'Peaxi162Scf00813g00119' => 'pax', 'Peaxi162Scf00906g00227' => 'pax', 'PGR004G0875' => 'pgr', 'PGR004G2424' => 'pgr', 'PGR031G1239' => 'pgr', 'PGR031G2474' => 'pgr', 'PGR044G0423' => 'pgr', 'PGSC0003DMG400001128' => 'stu', 'PGSC0003DMG400007336' => 'stu', 'PGSC0003DMG400016318' => 'stu', 'PGSC0003DMG400016319' => 'stu', 'PGSC0003DMG400018074' => 'stu', 'Phvul.001G157700' => 'pvu', 'Phvul.002G148550' => 'pvu', 'Phvul.002G320200' => 'pvu', 'Phvul.003G089200' => 'pvu', 'Phvul.007G126000' => 'pvu', 'Phvul.007G126100' => 'pvu', 'Phvul.007G178000' => 'pvu', 'Phvul.007G178200' => 'pvu', 'Potri.002G043000' => 'ptr', 'Potri.002G043200' => 'ptr', 'Potri.003G123750' => 'ptr', 'Potri.005G055401' => 'ptr', 'Potri.005G219700' => 'ptr', 'Potri.005G220000' => 'ptr', 'Potri.008G161901' => 'ptr', 'Potri.008G162000' => 'ptr', 'Potri.008G162400' => 'ptr', 'Potri.010G076900' => 'ptr', 'Pp3c12_9180' => 'ppa', 'Pp3c13_19770' => 'ppa', 'Pp3c14_22950' => 'ppa', 'Pp3c16_12160' => 'ppa', 'Pp3c27_7820' => 'ppa', 'Pp3c2_3490' => 'ppa', 'Pp3c3_23700' => 'ppa', 'Pp3c3_36520' => 'ppa', 'Pp3c4_15250' => 'ppa', 'PRCOL_00007002' => 'pco', 'Prupe.1G030600' => 'ppe', 'Prupe.1G030700' => 'ppe', 'Prupe.6G345200' => 'ppe', 'Prupe.8G230300' => 'ppe', 'Prupe.8G230500' => 'ppe', 'Psat3g059600' => 'psa', 'Psat5g200920' => 'psa', 'Psat6g056440' => 'psa', 'Psat6g057360' => 'psa', 'Psat6g134120' => 'psa', 'Psat6g134160' => 'psa', 'Psat7g008640' => 'psa', 'Psat7g185240' => 'psa', 'PSO017G1330' => 'pso', 'PSO063G6097' => 'pso', 'PSO170G0835' => 'pso', 'PSO170G2499' => 'pso', 'PSO210G5058' => 'pso', 'PSO210G6154' => 'pso', 'PSO585G0031' => 'pso', 'PSO832G0264' => 'pso', 'PSO832G4288' => 'pso', 'QL03p027355' => 'qlo', 'QL03p027430' => 'qlo', 'QL04p081380' => 'qlo', 'QL06p015642' => 'qlo', 'QL06p015650' => 'qlo', 'QL06p015686' => 'qlo', 'QL12p042927' => 'qlo', 'QL93p1863_0035' => 'qlo', 'RcHm_v2.0_Chr3g0450581' => 'rch', 'RcHm_v2.0_Chr4g0390371' => 'rch', 'RcHm_v2.0_Chr4g0390381' => 'rch', 'RcHm_v2.0_Chr4g0390491' => 'rch', 'RcHm_v2.0_Chr4g0390501' => 'rch', 'RcHm_v2.0_Chr6g0289231' => 'rch', 'Rhsim04G0190400' => 'rsi', 'Rhsim04G0190500' => 'rsi', 'Rhsim04G0190600' => 'rsi', 'Rhsim13G0031400' => 'rsi', 'Rhsim13G0165600' => 'rsi', 'RhsimUnG0114600' => 'rsi', 'RhsimUnG0114700' => 'rsi', 'Sabra02G0034800' => 'sbr', 'Sabra02G0035100' => 'sbr', 'Sabra05G0168600' => 'sbr', 'Sabra05G0168800' => 'sbr', 'Sabra08G0123700' => 'sbr', 'Sabra10G0031900' => 'sbr', 'Sabra13G0039000' => 'sbr', 'SalBow2G0782' => 'sbo', 'SalBow2G1403' => 'sbo', 'SalBow4G0074' => 'sbo', 'SalBow4G2635' => 'sbo', 'SalBow5G3010' => 'sbo', 'Sc05g0000870' => 'sci', 'Sc05g0000890' => 'sci', 'Sc13g0005000' => 'sci', 'Sc13g0005030' => 'sci', 'Sc19g0003790' => 'sci', 'Sc19g0003800' => 'sci', 'Sed0003467' => 'sed', 'Sed0009355' => 'sed', 'Sed0009894' => 'sed', 'Sed0011972' => 'sed', 'Sed0021483' => 'sed', 'Sed0021750' => 'sed', 'Sed0026279' => 'sed', 'SEGI_05312' => 'sgi', 'SEGI_10112' => 'sgi', 'SEGI_15835' => 'sgi', 'SEGI_30386' => 'sgi', 'SEGI_34122' => 'sgi', 'SEGI_35063' => 'sgi', 'SGA_v2.0_scaffold101G29794' => 'sas', 'SGA_v2.0_scaffold1G00573' => 'sas', 'SGA_v2.0_scaffold79G25637' => 'sas', 'SGA_v2.0_scaffold88G27283' => 'sas', 'SGA_v2.0_scaffold88G27285' => 'sas', 'SGA_v2.0_scaffold88G27331' => 'sas', 'SHI09937' => 'shi', 'SMO119G0302' => 'smo', 'SMO137G0231' => 'smo', 'SMO367G1151' => 'smo', 'Solyc02g082000.3' => 'sly', 'Solyc06g031670.3' => 'sly', 'Solyc06g053810.3' => 'sly', 'Solyc07g025457.1' => 'sly', 'Solyc08g059740.1' => 'sly', 'Solyc08g059750.3' => 'sly', 'Solyc09g083370.3' => 'sly', 'Solyc12g038950.3' => 'sly', 'Sopen02g026630' => 'spe', 'Sopen06g018930' => 'spe', 'Sopen06g018940' => 'spe', 'Sopen08g009460' => 'spe', 'Sopen09g032290' => 'spe', 'Sp1g03080' => 'spa', 'Sp1g03090' => 'spa', 'Sp1g05480' => 'spa', 'Sp2g07860' => 'spa', 'Sp2g08430' => 'spa', 'Sp2g08440' => 'spa', 'Sp2g26200' => 'spa', 'Sp4g13170' => 'spa', 'Sp6g33840' => 'spa', 'SpUn1204_0010' => 'spa', 'TAR365G0908' => 'tar', 'TAR381G1270' => 'tar', 'TAR381G1651' => 'tar', 'TAR625G1131' => 'tar', 'TAR633G0962' => 'tar', 'TAR633G1729' => 'tar', 'TAR633G1864' => 'tar', 'TAR636G0221' => 'tar', 'TAR636G0314' => 'tar', 'TAR636G3202' => 'tar', 'THA.LOC104800805' => 'tha', 'THA.LOC104801096' => 'tha', 'THA.LOC104801555' => 'tha', 'THA.LOC104808491' => 'tha', 'THA.LOC104808595' => 'tha', 'THA.LOC104815985' => 'tha', 'THA.LOC104822250' => 'tha', 'THA.LOC104826071' => 'tha', 'Thecc.01G265200' => 'tca', 'Thecc.01G265300' => 'tca', 'Thecc.01G265700' => 'tca', 'Thecc.03G109100' => 'tca', 'Thecc.04G245900' => 'tca', 'Thecc.04G246000' => 'tca', 'Thhalv10003334m.g' => 'esa', 'Thhalv10005508m.g' => 'esa', 'Thhalv10005643m.g' => 'esa', 'Thhalv10007316m.g' => 'esa', 'Thhalv10009006m.g' => 'esa', 'Thhalv10009309m.g' => 'esa', 'Thhalv10014917m.g' => 'esa', 'Thhalv10014919m.g' => 'esa', 'Thhalv10015393m.g' => 'esa', 'Thhalv10016515m.g' => 'esa', 'Thhalv10029242m.g' => 'esa', 'TPR.G16654' => 'tpr', 'TPR.G20589' => 'tpr', 'TPR.G23029' => 'tpr', 'TPR.G27731' => 'tpr', 'TPR.G28889' => 'tpr', 'TPR.G28899' => 'tpr', 'TPR.G30846' => 'tpr', 'TPR.G5452' => 'tpr', 'TPR.G5713' => 'tpr', 'TPR.G9046' => 'tpr', 'TPR.G9061' => 'tpr', 'TWI09G1075' => 'twi', 'TWI12G0806' => 'twi', 'TWI18G0108' => 'twi', 'TWI53G1361' => 'twi', 'TWI73G0185' => 'twi', 'TWI73G0427' => 'twi', 'unitig_37.g12001' => 'ugi', 'unitig_747.g21660' => 'ugi', 'unitig_748.g7232' => 'ugi', 'unitig_748.g7315' => 'ugi', 'unitig_85.g27262' => 'ugi', 'unitig_92.g28220' => 'ugi', 'vmacro02632' => 'vma', 'vmacro08410' => 'vma', 'vmacro08411' => 'vma', 'vmacro15407' => 'vma', 'VMungo0251G3619' => 'vmu', 'VMungo0720G1204' => 'vmu', 'VMungo0720G1918' => 'vmu', 'VMungo0720G2387' => 'vmu', 'VMungo0720G2961' => 'vmu', 'VMungo1215G2154' => 'vmu', 'VMungo1383G2411' => 'vmu', 'Zm00001eb051130' => 'zma', 'Zm00001eb116830' => 'zma', 'Zm00001eb116850' => 'zma', 'Zm00001eb151740' => 'zma', 'Zm00001eb292360' => 'zma', 'Zm00001eb301640' => 'zma' ) $gf_id = 'HOM05D000856' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000856' ) $data_identifier = 'HOM05D000856' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 13, 'ath' => (int) 10, 'atr' => (int) 1, 'acertr' => (int) 8, 'cqu' => (int) 6, 'bca' => (int) 21, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 11, 'car' => (int) 9, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 8, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 5, 'fan' => (int) 16, 'fve' => (int) 6, 'gma' => (int) 11, 'ghi' => (int) 19, 'gra' => (int) 9, 'vvi' => (int) 7, 'han' => (int) 17, 'cav' => (int) 5, 'hma' => (int) 2, 'vpl' => (int) 2, 'sun' => (int) 7, 'lal' => (int) 9, 'lja' => (int) 5, 'lonja' => (int) 9, 'lsa' => (int) 5, 'mes' => (int) 8, 'mpo' => (int) 3, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 10, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 15, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 9, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 9, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 6, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 5, 'spa' => (int) 10, 'tar' => (int) 10, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 11, 'tpr' => (int) 11, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 4, 'vmu' => (int) 7, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb301640' $species_info = array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ) $local_species = 'dca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000856', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p00010' => 'bna', 'A03p04160' => 'bna', 'A03p17160' => 'bna', 'A04p23370' => 'bna', 'A05p14860' => 'bna', 'A08p37020' => 'bna', 'A09p08050' => 'bna', 'A09p66800' => 'bna', 'A09p67940' => 'bna', 'A10p02680' => 'bna', 'A10p05320' => 'bna', 'Aa31LG1G20560' => 'aar', 'Aa31LG1G20610' => 'aar', 'Aa31LG1G7810' => 'aar', 'Aa31LG5G3590' => 'aar', 'Aa31LG5G6140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3819' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4683' => 'aag', 'Actinidia04480' => 'ach', 'Actinidia05466' => 'ach', 'Actinidia08445' => 'ach', 'Actinidia21170' => 'ach', 'Actinidia24812' => 'ach', 'Actinidia24951' => 'ach', 'Actinidia40088' => 'ach', 'Ah.02g111660' => 'amhyb', 'Ah.11g048900' => 'amhyb', 'Ah.11g049910' => 'amhyb', 'AL1G13870' => 'aly', 'AL1G13880' => 'aly', 'AL1G16760' => 'aly', 'AL390U10020' => 'aly', 'AL4G25520' => 'aly', 'AL6G19890' => 'aly', 'AL6G19900' => 'aly', 'AL6G19910' => 'aly', 'AL8G40100' => 'aly', 'Aqoxy2G03562' => 'aox', 'Aqoxy5G00316' => 'aox', 'Aqoxy5G00926' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1628KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1H403S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2FU6SJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.882I6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8YRY2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YN1SN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AF70II' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZA8L1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F916KL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHRD8H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KTZ8QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S22EMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8M29T' => 'arhy', 'AT1G04270' => 'ath', 'AT1G04280' => 'ath', 'AT1G06750' => 'ath', 'AT1G33850' => 'ath', 'AT2G30630' => 'ath', 'AT5G09490' => 'ath', 'AT5G09500' => 'ath', 'AT5G09510' => 'ath', 'AT5G43640' => 'ath', 'AT5G63070' => 'ath', 'ATR0605G315' => 'atr', 'Atru.chr11.175' => 'acertr', 'Atru.chr11.653' => 'acertr', 'Atru.chr3.1616' => 'acertr', 'Atru.chr4.2230' => 'acertr', 'Atru.chr4.2232' => 'acertr', 'Atru.chr5.1598' => 'acertr', 'Atru.chr5.1600' => 'acertr', 'Atru.chr5.2188' => 'acertr', 'AUR62008326' => 'cqu', 'AUR62011922' => 'cqu', 'AUR62011924' => 'cqu', 'AUR62021771' => 'cqu', 'AUR62032237' => 'cqu', 'AUR62032240' => 'cqu', 'BcaB01g05572' => 'bca', 'BcaB02g10337' => 'bca', 'BcaB04g19944' => 'bca', 'BcaB05g21548' => 'bca', 'BcaB05g21549' => 'bca', 'BcaB05g23227' => 'bca', 'BcaB06g26256' => 'bca', 'BcaB06g26257' => 'bca', 'BcaB06g28379' => 'bca', 'BcaC02g11159' => 'bca', 'BcaC03g13258' => 'bca', 'BcaC03g13259' => 'bca', 'BcaC05g24456' => 'bca', 'BcaC05g24457' => 'bca', 'BcaC07g36922' => 'bca', 'BcaC07g36923' => 'bca', 'BcaC07g42050' => 'bca', 'BcaC07g42176' => 'bca', 'BcaC07g42195' => 'bca', 'BcaC07g42196' => 'bca', 'BcaNung06674' => 'bca', 'BolC2t06351H' => 'bol', 'BolC2t06352H' => 'bol', 'BolC3t12993H' => 'bol', 'BolC4t23525H' => 'bol', 'BolC4t27475H' => 'bol', 'BolC5t29025H' => 'bol', 'BolC5t29026H' => 'bol', 'BolC8t46898H' => 'bol', 'BolC8t46899H' => 'bol', 'BolC8t52630H' => 'bol', 'BolC8t52765H' => 'bol', 'BolC9t53824H' => 'bol', 'BraA03t09760Z' => 'bra', 'BraA03t10990Z' => 'bra', 'BraA05t20413Z' => 'bra', 'BraA08t35602Z' => 'bra', 'BraA09t36458Z' => 'bra', 'BraA09t42018Z' => 'bra', 'BraA09t42129Z' => 'bra', 'BraA10t42536Z' => 'bra', 'BraA10t42537Z' => 'bra', 'C01p10690' => 'bna', 'C02p03890' => 'bna', 'C02p03900' => 'bna', 'C03p04620' => 'bna', 'C04p19870' => 'bna', 'C04p59670' => 'bna', 'C05p02460' => 'bna', 'C05p02470' => 'bna', 'C08p00980' => 'bna', 'C08p00990' => 'bna', 'C08p51030' => 'bna', 'C08p52360' => 'bna', 'C09p09120' => 'bna', 'CAN.G19.15' => 'can', 'CAN.G251.10' => 'can', 'CAN.G251.9' => 'can', 'CAN.G398.24' => 'can', 'CAN.G410.32' => 'can', 'CAN.G881.2' => 'can', 'CANSAT01G3025' => 'cansat', 'CANSAT78G1211' => 'cansat', 'CANSAT78G1218' => 'cansat', 'CANSAT78G1521' => 'cansat', 'CANSAT78G1670' => 'cansat', 'CARHR003600' => 'chi', 'CARHR003610' => 'chi', 'CARHR006290' => 'chi', 'CARHR006430' => 'chi', 'CARHR124110' => 'chi', 'CARHR203870' => 'chi', 'CARHR203880' => 'chi', 'CARHR203890' => 'chi', 'CARHR276880' => 'chi', 'Carub.0001s0346' => 'cru', 'Carub.0001s0347' => 'cru', 'Carub.0001s0607' => 'cru', 'Carub.0003s2768' => 'cru', 'Carub.0003s2769' => 'cru', 'Carub.0004s1178' => 'cru', 'Carub.0006s0806' => 'cru', 'Carub.0006s0807' => 'cru', 'Carub.0006s0808' => 'cru', 'Carub.0008s0501' => 'cru', 'Carub.0008s2379' => 'cru', 'Ca_08655_v3' => 'car', 'Ca_08922_v3' => 'car', 'Ca_08923_v3' => 'car', 'Ca_09119_v3' => 'car', 'Ca_09703_v3' => 'car', 'Ca_09705_v3' => 'car', 'Ca_09835_v3' => 'car', 'Ca_26403_v3' => 'car', 'Ca_30719_v3' => 'car', 'CBR_g17958' => 'cbr', 'CBR_g40516' => 'cbr', 'Cc00_g05350' => 'ccan', 'Cc01_g18690' => 'ccan', 'Cc03_g04830' => 'ccan', 'Cc03_g04850' => 'ccan', 'CDE02G4469' => 'cde', 'CDE06G0883' => 'cde', 'CDE06G1295' => 'cde', 'CDE06G1390' => 'cde', 'CDE07G0584' => 'cde', 'CDE07G1084' => 'cde', 'CDE08G1259' => 'cde', 'Cfa002341' => 'cfa', 'Cfa024337' => 'cfa', 'Ciclev10004749m.g' => 'ccl', 'Ciclev10006127m.g' => 'ccl', 'Ciclev10019720m.g' => 'ccl', 'Ciclev10022652m.g' => 'ccl', 'CiPaw.01G190400' => 'cil', 'CiPaw.01G190500' => 'cil', 'CiPaw.02G116400' => 'cil', 'CiPaw.02G116500' => 'cil', 'CiPaw.04G183000' => 'cil', 'CiPaw.04G183300' => 'cil', 'ClCG05G004610' => 'cla', 'ClCG05G004620' => 'cla', 'ClCG06G006730' => 'cla', 'ClCG06G006740' => 'cla', 'ClCG11G003690' => 'cla', 'COL.COLO4_08276' => 'col', 'COL.COLO4_08277' => 'col', 'COL.COLO4_15787' => 'col', 'COL.COLO4_15789' => 'col', 'Cpa.g.c44815' => 'cpa', 'Cpa.g.sc52.144' => 'cpa', 'Cpa.g.sc58.46' => 'cpa', 'Cpa.g.sc58.47' => 'cpa', 'Cre08.g360900' => 'cre', 'CsaV3_2G013030' => 'csa', 'CsaV3_2G013050' => 'csa', 'CsaV3_2G015620' => 'csa', 'CsaV3_3G012590' => 'csa', 'CsaV3_3G012600' => 'csa', 'CSS0001641' => 'camsi', 'CSS0008310' => 'camsi', 'CSS0013011' => 'camsi', 'CSS0017147' => 'camsi', 'CSS0022970' => 'camsi', 'CSS0025655' => 'camsi', 'CSS0028665' => 'camsi', 'CSS0029117' => 'camsi', 'CSS0032024' => 'camsi', 'CSS0039681' => 'camsi', 'CSS0046516' => 'camsi', 'CSS0050307' => 'camsi', 'DCAR_005871' => 'dca', 'DCAR_007342' => 'dca', 'DCAR_024228' => 'dca', 'DCAR_027277' => 'dca', 'DCAR_030718' => 'dca', 'Dinv20287' => 'din', 'Dinv22461' => 'din', 'Dinv22464' => 'din', 'Dinv29912' => 'din', 'Dinv29913' => 'din', 'Dinv34580' => 'din', 'Dinv34582' => 'din', 'Dinv44632' => 'din', 'Duzib052G0266' => 'dzi', 'Duzib133G0907' => 'dzi', 'Duzib133G1034' => 'dzi', 'Duzib138G0207' => 'dzi', 'Duzib138G0491' => 'dzi', 'Duzib151G0812' => 'dzi', 'Duzib151G1166' => 'dzi', 'Duzib168G0192' => 'dzi', 'Duzib211G0077' => 'dzi', 'Duzib212G0429' => 'dzi', 'Duzib212G0472' => 'dzi', 'ECA233G2617' => 'eca', 'ECA236G4188' => 'eca', 'ECA240G0936' => 'eca', 'ECA240G1129' => 'eca', 'ECA247G0623' => 'eca', 'EL10Ac5g10451' => 'bvu', 'EL10Ac5g10453' => 'bvu', 'EL10Ac5g10894' => 'bvu', 'Eucgr.H00192' => 'egr', 'Eucgr.H00193' => 'egr', 'Eucgr.H00194' => 'egr', 'Eucgr.J01562' => 'egr', 'Eucgr.K03301' => 'egr', 'FAN02G0632' => 'fan', 'FAN05G5378' => 'fan', 'FAN09G3247' => 'fan', 'FAN12G0435' => 'fan', 'FAN12G2426' => 'fan', 'FAN14G1707' => 'fan', 'FAN14G4725' => 'fan', 'FAN15G2071' => 'fan', 'FAN17G3065' => 'fan', 'FAN19G1376' => 'fan', 'FAN20G0354' => 'fan', 'FAN20G2429' => 'fan', 'FAN20G2658' => 'fan', 'FAN24G2343' => 'fan', 'FAN27G2362' => 'fan', 'FAN28G1765' => 'fan', 'FvH4_1g16020' => 'fve', 'FvH4_2g04890' => 'fve', 'FvH4_2g22270' => 'fve', 'FvH4_4g02630' => 'fve', 'FvH4_4g02640' => 'fve', 'FvH4_6g02650' => 'fve', 'Glyma.02G140600' => 'gma', 'Glyma.03G159900' => 'gma', 'Glyma.05G234800' => 'gma', 'Glyma.07G269600' => 'gma', 'Glyma.08G042300' => 'gma', 'Glyma.10G033500' => 'gma', 'Glyma.10G185200' => 'gma', 'Glyma.17G004300' => 'gma', 'Glyma.19G161900' => 'gma', 'Glyma.20G205100' => 'gma', 'Glyma.20G205200' => 'gma', 'Gohir.A01G139101' => 'ghi', 'Gohir.A02G035600' => 'ghi', 'Gohir.A02G117901' => 'ghi', 'Gohir.A07G210100' => 'ghi', 'Gohir.A07G210200' => 'ghi', 'Gohir.A08G061100' => 'ghi', 'Gohir.A09G223000' => 'ghi', 'Gohir.A09G223100' => 'ghi', 'Gohir.A10G113900' => 'ghi', 'Gohir.A10G114000' => 'ghi', 'Gohir.D02G042300' => 'ghi', 'Gohir.D07G216100' => 'ghi', 'Gohir.D07G216200' => 'ghi', 'Gohir.D08G070400' => 'ghi', 'Gohir.D09G225000' => 'ghi', 'Gohir.D09G225100' => 'ghi', 'Gohir.D10G152300' => 'ghi', 'Gohir.D10G153200' => 'ghi', 'Gohir.D11G133701' => 'ghi', 'Gorai.004G074100' => 'gra', 'Gorai.005G046800' => 'gra', 'Gorai.006G246500' => 'gra', 'Gorai.006G246600' => 'gra', 'Gorai.007G142900' => 'gra', 'Gorai.011G171000' => 'gra', 'Gorai.011G171100' => 'gra', 'Gorai.013G104300' => 'gra', 'Gorai.013G104400' => 'gra', 'GSVIVG01000754001' => 'vvi', 'GSVIVG01000756001' => 'vvi', 'GSVIVG01010903001' => 'vvi', 'GSVIVG01017623001' => 'vvi', 'GSVIVG01018113001' => 'vvi', 'GSVIVG01018116001' => 'vvi', 'GSVIVG01018118001' => 'vvi', 'HanXRQChr03g0076211' => 'han', 'HanXRQChr03g0092431' => 'han', 'HanXRQChr03g0092441' => 'han', 'HanXRQChr03g0092591' => 'han', 'HanXRQChr03g0092671' => 'han', 'HanXRQChr03g0092681' => 'han', 'HanXRQChr03g0092691' => 'han', 'HanXRQChr03g0092701' => 'han', 'HanXRQChr03g0092721' => 'han', 'HanXRQChr03g0092731' => 'han', 'HanXRQChr04g0113681' => 'han', 'HanXRQChr10g0281371' => 'han', 'HanXRQChr11g0337141' => 'han', 'HanXRQChr13g0424521' => 'han', 'HanXRQChr13g0424531' => 'han', 'HanXRQChr13g0424541' => 'han', 'HanXRQChr16g0498221' => 'han', 'Haze_04377' => 'cav', 'Haze_11298' => 'cav', 'Haze_24547' => 'cav', 'Haze_24550' => 'cav', 'Haze_26587' => 'cav', 'Hma1.2p1_0650F.1_g195410' => 'hma', 'Hma1.2p1_0893F.1_g233470' => 'hma', 'HPP92_006508' => 'vpl', 'HPP92_024780' => 'vpl', 'Hund02688' => 'sun', 'Hund09380' => 'sun', 'Hund09381' => 'sun', 'Hund09832' => 'sun', 'Hund09833' => 'sun', 'Hund11351' => 'sun', 'Hund11513' => 'sun', 'Lalb_Chr06g0162591' => 'lal', 'Lalb_Chr06g0162601' => 'lal', 'Lalb_Chr06g0169321' => 'lal', 'Lalb_Chr09g0330951' => 'lal', 'Lalb_Chr16g0387631' => 'lal', 'Lalb_Chr21g0306241' => 'lal', 'Lalb_Chr25g0290051' => 'lal', 'Lalb_Chr25g0290061' => 'lal', 'Lalb_Chr25g0290071' => 'lal', 'Lj1g0003876' => 'lja', 'Lj1P1207T36' => 'lonja', 'Lj2C1156G12' => 'lonja', 'Lj3A793G39' => 'lonja', 'Lj3C580G2' => 'lonja', 'Lj3C780G2' => 'lonja', 'Lj3C780T4' => 'lonja', 'Lj3C793G9' => 'lonja', 'Lj4g0012960' => 'lja', 'Lj5g0021252' => 'lja', 'Lj5g0021484' => 'lja', 'Lj5g0024528' => 'lja', 'Lj6A399T12' => 'lonja', 'Lj6A656G65' => 'lonja', 'Lsat_1_v5_gn_3_125500' => 'lsa', 'Lsat_1_v5_gn_3_125540' => 'lsa', 'Lsat_1_v5_gn_5_72701' => 'lsa', 'Lsat_1_v5_gn_8_91560' => 'lsa', 'Lsat_1_v5_gn_9_9640' => 'lsa', 'Manes.01G200600' => 'mes', 'Manes.01G200700' => 'mes', 'Manes.03G168900' => 'mes', 'Manes.03G169000' => 'mes', 'Manes.05G085801' => 'mes', 'Manes.05G086200' => 'mes', 'Manes.15G036700' => 'mes', 'Manes.15G036900' => 'mes', 'Mapoly0004s0172' => 'mpo', 'Mapoly0023s0001' => 'mpo', 'Mapoly0142s0012' => 'mpo', 'MBI01_g32854_MAGBIO' => 'mbi', 'MBI11_g24427_MAGBIO' => 'mbi', 'MBI11_g47319_MAGBIO' => 'mbi', 'MCO01G433' => 'mco', 'MD00G1187800' => 'mdo', 'MD04G1226500' => 'mdo', 'MD05G1203900' => 'mdo', 'MD10G1191100' => 'mdo', 'MD12G1243500' => 'mdo', 'MD13G1207000' => 'mdo', 'MD13G1207100' => 'mdo', 'MD16G1208600' => 'mdo', 'Medtr1g050352' => 'mtr', 'Medtr1g070385' => 'mtr', 'Medtr1g070450' => 'mtr', 'Medtr1g075200' => 'mtr', 'Medtr1g075250' => 'mtr', 'Medtr1g075260' => 'mtr', 'Medtr1g475250' => 'mtr', 'Medtr4g075450' => 'mtr', 'Medtr7g096300' => 'mtr', 'Medtr8g105110' => 'mtr', 'MELO3C006470.2' => 'cme', 'MELO3C006471.2' => 'cme', 'MELO3C020772.2' => 'cme', 'MELO3C026780.2' => 'cme', 'MELO3C026781.2' => 'cme', 'Migut.D00390' => 'egut', 'Migut.G00435' => 'egut', 'Migut.G00436' => 'egut', 'Migut.G00718' => 'egut', 'MSTRG.21891' => 'ama', 'MSTRG.26910' => 'ama', 'MSTRG.4099' => 'ama', 'MSTRG.9925' => 'ama', 'Nitab4.5_0000165g0010' => 'nta', 'Nitab4.5_0000209g0180' => 'nta', 'Nitab4.5_0000244g0440' => 'nta', 'Nitab4.5_0000525g0220' => 'nta', 'Nitab4.5_0001597g0020' => 'nta', 'Nitab4.5_0001878g0040' => 'nta', 'Nitab4.5_0001878g0060' => 'nta', 'Nitab4.5_0002838g0100' => 'nta', 'Nitab4.5_0002838g0120' => 'nta', 'Nitab4.5_0004798g0030' => 'nta', 'Nitab4.5_0005420g0010' => 'nta', 'Nitab4.5_0005507g0010' => 'nta', 'Nitab4.5_0005574g0020' => 'nta', 'Nitab4.5_0005838g0010' => 'nta', 'Nitab4.5_0010580g0020' => 'nta', 'Nn1g02599' => 'nnu', 'Nn1g02608' => 'nnu', 'Nn3g17742' => 'nnu', 'Nn3g19534' => 'nnu', 'Nn3g19535' => 'nnu', 'Oeu008790.1' => 'oeu', 'Oeu008792.1' => 'oeu', 'Oeu032590.1' => 'oeu', 'Oeu035349.1' => 'oeu', 'Oeu049791.1' => 'oeu', 'Os01g0774500' => 'osa', 'Os03g0628800' => 'osa', 'Os03g0798600' => 'osa', 'Os05g0508800' => 'osa', 'Peaxi162Scf00036g02018' => 'pax', 'Peaxi162Scf00578g00032' => 'pax', 'Peaxi162Scf00578g00317' => 'pax', 'Peaxi162Scf00785g00114' => 'pax', 'Peaxi162Scf00813g00119' => 'pax', 'Peaxi162Scf00906g00227' => 'pax', 'PGR004G0875' => 'pgr', 'PGR004G2424' => 'pgr', 'PGR031G1239' => 'pgr', 'PGR031G2474' => 'pgr', 'PGR044G0423' => 'pgr', 'PGSC0003DMG400001128' => 'stu', 'PGSC0003DMG400007336' => 'stu', 'PGSC0003DMG400016318' => 'stu', 'PGSC0003DMG400016319' => 'stu', 'PGSC0003DMG400018074' => 'stu', 'Phvul.001G157700' => 'pvu', 'Phvul.002G148550' => 'pvu', 'Phvul.002G320200' => 'pvu', 'Phvul.003G089200' => 'pvu', 'Phvul.007G126000' => 'pvu', 'Phvul.007G126100' => 'pvu', 'Phvul.007G178000' => 'pvu', 'Phvul.007G178200' => 'pvu', 'Potri.002G043000' => 'ptr', 'Potri.002G043200' => 'ptr', 'Potri.003G123750' => 'ptr', 'Potri.005G055401' => 'ptr', 'Potri.005G219700' => 'ptr', 'Potri.005G220000' => 'ptr', 'Potri.008G161901' => 'ptr', 'Potri.008G162000' => 'ptr', 'Potri.008G162400' => 'ptr', 'Potri.010G076900' => 'ptr', 'Pp3c12_9180' => 'ppa', 'Pp3c13_19770' => 'ppa', 'Pp3c14_22950' => 'ppa', 'Pp3c16_12160' => 'ppa', 'Pp3c27_7820' => 'ppa', 'Pp3c2_3490' => 'ppa', 'Pp3c3_23700' => 'ppa', 'Pp3c3_36520' => 'ppa', 'Pp3c4_15250' => 'ppa', 'PRCOL_00007002' => 'pco', 'Prupe.1G030600' => 'ppe', 'Prupe.1G030700' => 'ppe', 'Prupe.6G345200' => 'ppe', 'Prupe.8G230300' => 'ppe', 'Prupe.8G230500' => 'ppe', 'Psat3g059600' => 'psa', 'Psat5g200920' => 'psa', 'Psat6g056440' => 'psa', 'Psat6g057360' => 'psa', 'Psat6g134120' => 'psa', 'Psat6g134160' => 'psa', 'Psat7g008640' => 'psa', 'Psat7g185240' => 'psa', 'PSO017G1330' => 'pso', 'PSO063G6097' => 'pso', 'PSO170G0835' => 'pso', 'PSO170G2499' => 'pso', 'PSO210G5058' => 'pso', 'PSO210G6154' => 'pso', 'PSO585G0031' => 'pso', 'PSO832G0264' => 'pso', 'PSO832G4288' => 'pso', 'QL03p027355' => 'qlo', 'QL03p027430' => 'qlo', 'QL04p081380' => 'qlo', 'QL06p015642' => 'qlo', 'QL06p015650' => 'qlo', 'QL06p015686' => 'qlo', 'QL12p042927' => 'qlo', 'QL93p1863_0035' => 'qlo', 'RcHm_v2.0_Chr3g0450581' => 'rch', 'RcHm_v2.0_Chr4g0390371' => 'rch', 'RcHm_v2.0_Chr4g0390381' => 'rch', 'RcHm_v2.0_Chr4g0390491' => 'rch', 'RcHm_v2.0_Chr4g0390501' => 'rch', 'RcHm_v2.0_Chr6g0289231' => 'rch', 'Rhsim04G0190400' => 'rsi', 'Rhsim04G0190500' => 'rsi', 'Rhsim04G0190600' => 'rsi', 'Rhsim13G0031400' => 'rsi', 'Rhsim13G0165600' => 'rsi', 'RhsimUnG0114600' => 'rsi', 'RhsimUnG0114700' => 'rsi', 'Sabra02G0034800' => 'sbr', 'Sabra02G0035100' => 'sbr', 'Sabra05G0168600' => 'sbr', 'Sabra05G0168800' => 'sbr', 'Sabra08G0123700' => 'sbr', 'Sabra10G0031900' => 'sbr', 'Sabra13G0039000' => 'sbr', 'SalBow2G0782' => 'sbo', 'SalBow2G1403' => 'sbo', 'SalBow4G0074' => 'sbo', 'SalBow4G2635' => 'sbo', 'SalBow5G3010' => 'sbo', 'Sc05g0000870' => 'sci', 'Sc05g0000890' => 'sci', 'Sc13g0005000' => 'sci', 'Sc13g0005030' => 'sci', 'Sc19g0003790' => 'sci', 'Sc19g0003800' => 'sci', 'Sed0003467' => 'sed', 'Sed0009355' => 'sed', 'Sed0009894' => 'sed', 'Sed0011972' => 'sed', 'Sed0021483' => 'sed', 'Sed0021750' => 'sed', 'Sed0026279' => 'sed', 'SEGI_05312' => 'sgi', 'SEGI_10112' => 'sgi', 'SEGI_15835' => 'sgi', 'SEGI_30386' => 'sgi', 'SEGI_34122' => 'sgi', 'SEGI_35063' => 'sgi', 'SGA_v2.0_scaffold101G29794' => 'sas', 'SGA_v2.0_scaffold1G00573' => 'sas', 'SGA_v2.0_scaffold79G25637' => 'sas', 'SGA_v2.0_scaffold88G27283' => 'sas', 'SGA_v2.0_scaffold88G27285' => 'sas', 'SGA_v2.0_scaffold88G27331' => 'sas', 'SHI09937' => 'shi', 'SMO119G0302' => 'smo', 'SMO137G0231' => 'smo', 'SMO367G1151' => 'smo', 'Solyc02g082000.3' => 'sly', 'Solyc06g031670.3' => 'sly', 'Solyc06g053810.3' => 'sly', 'Solyc07g025457.1' => 'sly', 'Solyc08g059740.1' => 'sly', 'Solyc08g059750.3' => 'sly', 'Solyc09g083370.3' => 'sly', 'Solyc12g038950.3' => 'sly', 'Sopen02g026630' => 'spe', 'Sopen06g018930' => 'spe', 'Sopen06g018940' => 'spe', 'Sopen08g009460' => 'spe', 'Sopen09g032290' => 'spe', 'Sp1g03080' => 'spa', 'Sp1g03090' => 'spa', 'Sp1g05480' => 'spa', 'Sp2g07860' => 'spa', 'Sp2g08430' => 'spa', 'Sp2g08440' => 'spa', 'Sp2g26200' => 'spa', 'Sp4g13170' => 'spa', 'Sp6g33840' => 'spa', 'SpUn1204_0010' => 'spa', 'TAR365G0908' => 'tar', 'TAR381G1270' => 'tar', 'TAR381G1651' => 'tar', 'TAR625G1131' => 'tar', 'TAR633G0962' => 'tar', 'TAR633G1729' => 'tar', 'TAR633G1864' => 'tar', 'TAR636G0221' => 'tar', 'TAR636G0314' => 'tar', 'TAR636G3202' => 'tar', 'THA.LOC104800805' => 'tha', 'THA.LOC104801096' => 'tha', 'THA.LOC104801555' => 'tha', 'THA.LOC104808491' => 'tha', 'THA.LOC104808595' => 'tha', 'THA.LOC104815985' => 'tha', 'THA.LOC104822250' => 'tha', 'THA.LOC104826071' => 'tha', 'Thecc.01G265200' => 'tca', 'Thecc.01G265300' => 'tca', 'Thecc.01G265700' => 'tca', 'Thecc.03G109100' => 'tca', 'Thecc.04G245900' => 'tca', 'Thecc.04G246000' => 'tca', 'Thhalv10003334m.g' => 'esa', 'Thhalv10005508m.g' => 'esa', 'Thhalv10005643m.g' => 'esa', 'Thhalv10007316m.g' => 'esa', 'Thhalv10009006m.g' => 'esa', 'Thhalv10009309m.g' => 'esa', 'Thhalv10014917m.g' => 'esa', 'Thhalv10014919m.g' => 'esa', 'Thhalv10015393m.g' => 'esa', 'Thhalv10016515m.g' => 'esa', 'Thhalv10029242m.g' => 'esa', 'TPR.G16654' => 'tpr', 'TPR.G20589' => 'tpr', 'TPR.G23029' => 'tpr', 'TPR.G27731' => 'tpr', 'TPR.G28889' => 'tpr', 'TPR.G28899' => 'tpr', 'TPR.G30846' => 'tpr', 'TPR.G5452' => 'tpr', 'TPR.G5713' => 'tpr', 'TPR.G9046' => 'tpr', 'TPR.G9061' => 'tpr', 'TWI09G1075' => 'twi', 'TWI12G0806' => 'twi', 'TWI18G0108' => 'twi', 'TWI53G1361' => 'twi', 'TWI73G0185' => 'twi', 'TWI73G0427' => 'twi', 'unitig_37.g12001' => 'ugi', 'unitig_747.g21660' => 'ugi', 'unitig_748.g7232' => 'ugi', 'unitig_748.g7315' => 'ugi', 'unitig_85.g27262' => 'ugi', 'unitig_92.g28220' => 'ugi', 'vmacro02632' => 'vma', 'vmacro08410' => 'vma', 'vmacro08411' => 'vma', 'vmacro15407' => 'vma', 'VMungo0251G3619' => 'vmu', 'VMungo0720G1204' => 'vmu', 'VMungo0720G1918' => 'vmu', 'VMungo0720G2387' => 'vmu', 'VMungo0720G2961' => 'vmu', 'VMungo1215G2154' => 'vmu', 'VMungo1383G2411' => 'vmu', 'Zm00001eb051130' => 'zma', 'Zm00001eb116830' => 'zma', 'Zm00001eb116850' => 'zma', 'Zm00001eb151740' => 'zma', 'Zm00001eb292360' => 'zma', 'Zm00001eb301640' => 'zma' ), 'gf_id' => 'HOM05D000856', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000856' ), 'data_identifier' => 'HOM05D000856', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000856', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p00010' => 'bna', 'A03p04160' => 'bna', 'A03p17160' => 'bna', 'A04p23370' => 'bna', 'A05p14860' => 'bna', 'A08p37020' => 'bna', 'A09p08050' => 'bna', 'A09p66800' => 'bna', 'A09p67940' => 'bna', 'A10p02680' => 'bna', 'A10p05320' => 'bna', 'Aa31LG1G20560' => 'aar', 'Aa31LG1G20610' => 'aar', 'Aa31LG1G7810' => 'aar', 'Aa31LG5G3590' => 'aar', 'Aa31LG5G6140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3819' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4683' => 'aag', 'Actinidia04480' => 'ach', 'Actinidia05466' => 'ach', 'Actinidia08445' => 'ach', 'Actinidia21170' => 'ach', 'Actinidia24812' => 'ach', 'Actinidia24951' => 'ach', 'Actinidia40088' => 'ach', 'Ah.02g111660' => 'amhyb', 'Ah.11g048900' => 'amhyb', 'Ah.11g049910' => 'amhyb', 'AL1G13870' => 'aly', 'AL1G13880' => 'aly', 'AL1G16760' => 'aly', 'AL390U10020' => 'aly', 'AL4G25520' => 'aly', 'AL6G19890' => 'aly', 'AL6G19900' => 'aly', 'AL6G19910' => 'aly', 'AL8G40100' => 'aly', 'Aqoxy2G03562' => 'aox', 'Aqoxy5G00316' => 'aox', 'Aqoxy5G00926' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1628KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1H403S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2FU6SJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.882I6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8YRY2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YN1SN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AF70II' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZA8L1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F916KL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHRD8H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KTZ8QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S22EMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8M29T' => 'arhy', 'AT1G04270' => 'ath', 'AT1G04280' => 'ath', 'AT1G06750' => 'ath', 'AT1G33850' => 'ath', 'AT2G30630' => 'ath', 'AT5G09490' => 'ath', 'AT5G09500' => 'ath', 'AT5G09510' => 'ath', 'AT5G43640' => 'ath', 'AT5G63070' => 'ath', 'ATR0605G315' => 'atr', 'Atru.chr11.175' => 'acertr', 'Atru.chr11.653' => 'acertr', 'Atru.chr3.1616' => 'acertr', 'Atru.chr4.2230' => 'acertr', 'Atru.chr4.2232' => 'acertr', 'Atru.chr5.1598' => 'acertr', 'Atru.chr5.1600' => 'acertr', 'Atru.chr5.2188' => 'acertr', 'AUR62008326' => 'cqu', 'AUR62011922' => 'cqu', 'AUR62011924' => 'cqu', 'AUR62021771' => 'cqu', 'AUR62032237' => 'cqu', 'AUR62032240' => 'cqu', 'BcaB01g05572' => 'bca', 'BcaB02g10337' => 'bca', 'BcaB04g19944' => 'bca', 'BcaB05g21548' => 'bca', 'BcaB05g21549' => 'bca', 'BcaB05g23227' => 'bca', 'BcaB06g26256' => 'bca', 'BcaB06g26257' => 'bca', 'BcaB06g28379' => 'bca', 'BcaC02g11159' => 'bca', 'BcaC03g13258' => 'bca', 'BcaC03g13259' => 'bca', 'BcaC05g24456' => 'bca', 'BcaC05g24457' => 'bca', 'BcaC07g36922' => 'bca', 'BcaC07g36923' => 'bca', 'BcaC07g42050' => 'bca', 'BcaC07g42176' => 'bca', 'BcaC07g42195' => 'bca', 'BcaC07g42196' => 'bca', 'BcaNung06674' => 'bca', 'BolC2t06351H' => 'bol', 'BolC2t06352H' => 'bol', 'BolC3t12993H' => 'bol', 'BolC4t23525H' => 'bol', 'BolC4t27475H' => 'bol', 'BolC5t29025H' => 'bol', 'BolC5t29026H' => 'bol', 'BolC8t46898H' => 'bol', 'BolC8t46899H' => 'bol', 'BolC8t52630H' => 'bol', 'BolC8t52765H' => 'bol', 'BolC9t53824H' => 'bol', 'BraA03t09760Z' => 'bra', 'BraA03t10990Z' => 'bra', 'BraA05t20413Z' => 'bra', 'BraA08t35602Z' => 'bra', 'BraA09t36458Z' => 'bra', 'BraA09t42018Z' => 'bra', 'BraA09t42129Z' => 'bra', 'BraA10t42536Z' => 'bra', 'BraA10t42537Z' => 'bra', 'C01p10690' => 'bna', 'C02p03890' => 'bna', 'C02p03900' => 'bna', 'C03p04620' => 'bna', 'C04p19870' => 'bna', 'C04p59670' => 'bna', 'C05p02460' => 'bna', 'C05p02470' => 'bna', 'C08p00980' => 'bna', 'C08p00990' => 'bna', 'C08p51030' => 'bna', 'C08p52360' => 'bna', 'C09p09120' => 'bna', 'CAN.G19.15' => 'can', 'CAN.G251.10' => 'can', 'CAN.G251.9' => 'can', 'CAN.G398.24' => 'can', 'CAN.G410.32' => 'can', 'CAN.G881.2' => 'can', 'CANSAT01G3025' => 'cansat', 'CANSAT78G1211' => 'cansat', 'CANSAT78G1218' => 'cansat', 'CANSAT78G1521' => 'cansat', 'CANSAT78G1670' => 'cansat', 'CARHR003600' => 'chi', 'CARHR003610' => 'chi', 'CARHR006290' => 'chi', 'CARHR006430' => 'chi', 'CARHR124110' => 'chi', 'CARHR203870' => 'chi', 'CARHR203880' => 'chi', 'CARHR203890' => 'chi', 'CARHR276880' => 'chi', 'Carub.0001s0346' => 'cru', 'Carub.0001s0347' => 'cru', 'Carub.0001s0607' => 'cru', 'Carub.0003s2768' => 'cru', 'Carub.0003s2769' => 'cru', 'Carub.0004s1178' => 'cru', 'Carub.0006s0806' => 'cru', 'Carub.0006s0807' => 'cru', 'Carub.0006s0808' => 'cru', 'Carub.0008s0501' => 'cru', 'Carub.0008s2379' => 'cru', 'Ca_08655_v3' => 'car', 'Ca_08922_v3' => 'car', 'Ca_08923_v3' => 'car', 'Ca_09119_v3' => 'car', 'Ca_09703_v3' => 'car', 'Ca_09705_v3' => 'car', 'Ca_09835_v3' => 'car', 'Ca_26403_v3' => 'car', 'Ca_30719_v3' => 'car', 'CBR_g17958' => 'cbr', 'CBR_g40516' => 'cbr', 'Cc00_g05350' => 'ccan', 'Cc01_g18690' => 'ccan', 'Cc03_g04830' => 'ccan', 'Cc03_g04850' => 'ccan', 'CDE02G4469' => 'cde', 'CDE06G0883' => 'cde', 'CDE06G1295' => 'cde', 'CDE06G1390' => 'cde', 'CDE07G0584' => 'cde', 'CDE07G1084' => 'cde', 'CDE08G1259' => 'cde', 'Cfa002341' => 'cfa', 'Cfa024337' => 'cfa', 'Ciclev10004749m.g' => 'ccl', 'Ciclev10006127m.g' => 'ccl', 'Ciclev10019720m.g' => 'ccl', 'Ciclev10022652m.g' => 'ccl', 'CiPaw.01G190400' => 'cil', 'CiPaw.01G190500' => 'cil', 'CiPaw.02G116400' => 'cil', 'CiPaw.02G116500' => 'cil', 'CiPaw.04G183000' => 'cil', 'CiPaw.04G183300' => 'cil', 'ClCG05G004610' => 'cla', 'ClCG05G004620' => 'cla', 'ClCG06G006730' => 'cla', 'ClCG06G006740' => 'cla', 'ClCG11G003690' => 'cla', 'COL.COLO4_08276' => 'col', 'COL.COLO4_08277' => 'col', 'COL.COLO4_15787' => 'col', 'COL.COLO4_15789' => 'col', 'Cpa.g.c44815' => 'cpa', 'Cpa.g.sc52.144' => 'cpa', 'Cpa.g.sc58.46' => 'cpa', 'Cpa.g.sc58.47' => 'cpa', 'Cre08.g360900' => 'cre', 'CsaV3_2G013030' => 'csa', 'CsaV3_2G013050' => 'csa', 'CsaV3_2G015620' => 'csa', 'CsaV3_3G012590' => 'csa', 'CsaV3_3G012600' => 'csa', 'CSS0001641' => 'camsi', 'CSS0008310' => 'camsi', 'CSS0013011' => 'camsi', 'CSS0017147' => 'camsi', 'CSS0022970' => 'camsi', 'CSS0025655' => 'camsi', 'CSS0028665' => 'camsi', 'CSS0029117' => 'camsi', 'CSS0032024' => 'camsi', 'CSS0039681' => 'camsi', 'CSS0046516' => 'camsi', 'CSS0050307' => 'camsi', 'DCAR_005871' => 'dca', 'DCAR_007342' => 'dca', 'DCAR_024228' => 'dca', 'DCAR_027277' => 'dca', 'DCAR_030718' => 'dca', 'Dinv20287' => 'din', 'Dinv22461' => 'din', 'Dinv22464' => 'din', 'Dinv29912' => 'din', 'Dinv29913' => 'din', 'Dinv34580' => 'din', 'Dinv34582' => 'din', 'Dinv44632' => 'din', 'Duzib052G0266' => 'dzi', 'Duzib133G0907' => 'dzi', 'Duzib133G1034' => 'dzi', 'Duzib138G0207' => 'dzi', 'Duzib138G0491' => 'dzi', 'Duzib151G0812' => 'dzi', 'Duzib151G1166' => 'dzi', 'Duzib168G0192' => 'dzi', 'Duzib211G0077' => 'dzi', 'Duzib212G0429' => 'dzi', 'Duzib212G0472' => 'dzi', 'ECA233G2617' => 'eca', 'ECA236G4188' => 'eca', 'ECA240G0936' => 'eca', 'ECA240G1129' => 'eca', 'ECA247G0623' => 'eca', 'EL10Ac5g10451' => 'bvu', 'EL10Ac5g10453' => 'bvu', 'EL10Ac5g10894' => 'bvu', 'Eucgr.H00192' => 'egr', 'Eucgr.H00193' => 'egr', 'Eucgr.H00194' => 'egr', 'Eucgr.J01562' => 'egr', 'Eucgr.K03301' => 'egr', 'FAN02G0632' => 'fan', 'FAN05G5378' => 'fan', 'FAN09G3247' => 'fan', 'FAN12G0435' => 'fan', 'FAN12G2426' => 'fan', 'FAN14G1707' => 'fan', 'FAN14G4725' => 'fan', 'FAN15G2071' => 'fan', 'FAN17G3065' => 'fan', 'FAN19G1376' => 'fan', 'FAN20G0354' => 'fan', 'FAN20G2429' => 'fan', 'FAN20G2658' => 'fan', 'FAN24G2343' => 'fan', 'FAN27G2362' => 'fan', 'FAN28G1765' => 'fan', 'FvH4_1g16020' => 'fve', 'FvH4_2g04890' => 'fve', 'FvH4_2g22270' => 'fve', 'FvH4_4g02630' => 'fve', 'FvH4_4g02640' => 'fve', 'FvH4_6g02650' => 'fve', 'Glyma.02G140600' => 'gma', 'Glyma.03G159900' => 'gma', 'Glyma.05G234800' => 'gma', 'Glyma.07G269600' => 'gma', 'Glyma.08G042300' => 'gma', 'Glyma.10G033500' => 'gma', 'Glyma.10G185200' => 'gma', 'Glyma.17G004300' => 'gma', 'Glyma.19G161900' => 'gma', 'Glyma.20G205100' => 'gma', 'Glyma.20G205200' => 'gma', 'Gohir.A01G139101' => 'ghi', 'Gohir.A02G035600' => 'ghi', 'Gohir.A02G117901' => 'ghi', 'Gohir.A07G210100' => 'ghi', 'Gohir.A07G210200' => 'ghi', 'Gohir.A08G061100' => 'ghi', 'Gohir.A09G223000' => 'ghi', 'Gohir.A09G223100' => 'ghi', 'Gohir.A10G113900' => 'ghi', 'Gohir.A10G114000' => 'ghi', 'Gohir.D02G042300' => 'ghi', 'Gohir.D07G216100' => 'ghi', 'Gohir.D07G216200' => 'ghi', 'Gohir.D08G070400' => 'ghi', 'Gohir.D09G225000' => 'ghi', 'Gohir.D09G225100' => 'ghi', 'Gohir.D10G152300' => 'ghi', 'Gohir.D10G153200' => 'ghi', 'Gohir.D11G133701' => 'ghi', 'Gorai.004G074100' => 'gra', 'Gorai.005G046800' => 'gra', 'Gorai.006G246500' => 'gra', 'Gorai.006G246600' => 'gra', 'Gorai.007G142900' => 'gra', 'Gorai.011G171000' => 'gra', 'Gorai.011G171100' => 'gra', 'Gorai.013G104300' => 'gra', 'Gorai.013G104400' => 'gra', 'GSVIVG01000754001' => 'vvi', 'GSVIVG01000756001' => 'vvi', 'GSVIVG01010903001' => 'vvi', 'GSVIVG01017623001' => 'vvi', 'GSVIVG01018113001' => 'vvi', 'GSVIVG01018116001' => 'vvi', 'GSVIVG01018118001' => 'vvi', 'HanXRQChr03g0076211' => 'han', 'HanXRQChr03g0092431' => 'han', 'HanXRQChr03g0092441' => 'han', 'HanXRQChr03g0092591' => 'han', 'HanXRQChr03g0092671' => 'han', 'HanXRQChr03g0092681' => 'han', 'HanXRQChr03g0092691' => 'han', 'HanXRQChr03g0092701' => 'han', 'HanXRQChr03g0092721' => 'han', 'HanXRQChr03g0092731' => 'han', 'HanXRQChr04g0113681' => 'han', 'HanXRQChr10g0281371' => 'han', 'HanXRQChr11g0337141' => 'han', 'HanXRQChr13g0424521' => 'han', 'HanXRQChr13g0424531' => 'han', 'HanXRQChr13g0424541' => 'han', 'HanXRQChr16g0498221' => 'han', 'Haze_04377' => 'cav', 'Haze_11298' => 'cav', 'Haze_24547' => 'cav', 'Haze_24550' => 'cav', 'Haze_26587' => 'cav', 'Hma1.2p1_0650F.1_g195410' => 'hma', 'Hma1.2p1_0893F.1_g233470' => 'hma', 'HPP92_006508' => 'vpl', 'HPP92_024780' => 'vpl', 'Hund02688' => 'sun', 'Hund09380' => 'sun', 'Hund09381' => 'sun', 'Hund09832' => 'sun', 'Hund09833' => 'sun', 'Hund11351' => 'sun', 'Hund11513' => 'sun', 'Lalb_Chr06g0162591' => 'lal', 'Lalb_Chr06g0162601' => 'lal', 'Lalb_Chr06g0169321' => 'lal', 'Lalb_Chr09g0330951' => 'lal', 'Lalb_Chr16g0387631' => 'lal', 'Lalb_Chr21g0306241' => 'lal', 'Lalb_Chr25g0290051' => 'lal', 'Lalb_Chr25g0290061' => 'lal', 'Lalb_Chr25g0290071' => 'lal', 'Lj1g0003876' => 'lja', 'Lj1P1207T36' => 'lonja', 'Lj2C1156G12' => 'lonja', 'Lj3A793G39' => 'lonja', 'Lj3C580G2' => 'lonja', 'Lj3C780G2' => 'lonja', 'Lj3C780T4' => 'lonja', 'Lj3C793G9' => 'lonja', 'Lj4g0012960' => 'lja', 'Lj5g0021252' => 'lja', 'Lj5g0021484' => 'lja', 'Lj5g0024528' => 'lja', 'Lj6A399T12' => 'lonja', 'Lj6A656G65' => 'lonja', 'Lsat_1_v5_gn_3_125500' => 'lsa', 'Lsat_1_v5_gn_3_125540' => 'lsa', 'Lsat_1_v5_gn_5_72701' => 'lsa', 'Lsat_1_v5_gn_8_91560' => 'lsa', 'Lsat_1_v5_gn_9_9640' => 'lsa', 'Manes.01G200600' => 'mes', 'Manes.01G200700' => 'mes', 'Manes.03G168900' => 'mes', 'Manes.03G169000' => 'mes', 'Manes.05G085801' => 'mes', 'Manes.05G086200' => 'mes', 'Manes.15G036700' => 'mes', 'Manes.15G036900' => 'mes', 'Mapoly0004s0172' => 'mpo', 'Mapoly0023s0001' => 'mpo', 'Mapoly0142s0012' => 'mpo', 'MBI01_g32854_MAGBIO' => 'mbi', 'MBI11_g24427_MAGBIO' => 'mbi', 'MBI11_g47319_MAGBIO' => 'mbi', 'MCO01G433' => 'mco', 'MD00G1187800' => 'mdo', 'MD04G1226500' => 'mdo', 'MD05G1203900' => 'mdo', 'MD10G1191100' => 'mdo', 'MD12G1243500' => 'mdo', 'MD13G1207000' => 'mdo', 'MD13G1207100' => 'mdo', 'MD16G1208600' => 'mdo', 'Medtr1g050352' => 'mtr', 'Medtr1g070385' => 'mtr', 'Medtr1g070450' => 'mtr', 'Medtr1g075200' => 'mtr', 'Medtr1g075250' => 'mtr', 'Medtr1g075260' => 'mtr', 'Medtr1g475250' => 'mtr', 'Medtr4g075450' => 'mtr', 'Medtr7g096300' => 'mtr', 'Medtr8g105110' => 'mtr', 'MELO3C006470.2' => 'cme', 'MELO3C006471.2' => 'cme', 'MELO3C020772.2' => 'cme', 'MELO3C026780.2' => 'cme', 'MELO3C026781.2' => 'cme', 'Migut.D00390' => 'egut', 'Migut.G00435' => 'egut', 'Migut.G00436' => 'egut', 'Migut.G00718' => 'egut', 'MSTRG.21891' => 'ama', 'MSTRG.26910' => 'ama', 'MSTRG.4099' => 'ama', 'MSTRG.9925' => 'ama', 'Nitab4.5_0000165g0010' => 'nta', 'Nitab4.5_0000209g0180' => 'nta', 'Nitab4.5_0000244g0440' => 'nta', 'Nitab4.5_0000525g0220' => 'nta', 'Nitab4.5_0001597g0020' => 'nta', 'Nitab4.5_0001878g0040' => 'nta', 'Nitab4.5_0001878g0060' => 'nta', 'Nitab4.5_0002838g0100' => 'nta', 'Nitab4.5_0002838g0120' => 'nta', 'Nitab4.5_0004798g0030' => 'nta', 'Nitab4.5_0005420g0010' => 'nta', 'Nitab4.5_0005507g0010' => 'nta', 'Nitab4.5_0005574g0020' => 'nta', 'Nitab4.5_0005838g0010' => 'nta', 'Nitab4.5_0010580g0020' => 'nta', 'Nn1g02599' => 'nnu', 'Nn1g02608' => 'nnu', 'Nn3g17742' => 'nnu', 'Nn3g19534' => 'nnu', 'Nn3g19535' => 'nnu', 'Oeu008790.1' => 'oeu', 'Oeu008792.1' => 'oeu', 'Oeu032590.1' => 'oeu', 'Oeu035349.1' => 'oeu', 'Oeu049791.1' => 'oeu', 'Os01g0774500' => 'osa', 'Os03g0628800' => 'osa', 'Os03g0798600' => 'osa', 'Os05g0508800' => 'osa', 'Peaxi162Scf00036g02018' => 'pax', 'Peaxi162Scf00578g00032' => 'pax', 'Peaxi162Scf00578g00317' => 'pax', 'Peaxi162Scf00785g00114' => 'pax', 'Peaxi162Scf00813g00119' => 'pax', 'Peaxi162Scf00906g00227' => 'pax', 'PGR004G0875' => 'pgr', 'PGR004G2424' => 'pgr', 'PGR031G1239' => 'pgr', 'PGR031G2474' => 'pgr', 'PGR044G0423' => 'pgr', 'PGSC0003DMG400001128' => 'stu', 'PGSC0003DMG400007336' => 'stu', 'PGSC0003DMG400016318' => 'stu', 'PGSC0003DMG400016319' => 'stu', 'PGSC0003DMG400018074' => 'stu', 'Phvul.001G157700' => 'pvu', 'Phvul.002G148550' => 'pvu', 'Phvul.002G320200' => 'pvu', 'Phvul.003G089200' => 'pvu', 'Phvul.007G126000' => 'pvu', 'Phvul.007G126100' => 'pvu', 'Phvul.007G178000' => 'pvu', 'Phvul.007G178200' => 'pvu', 'Potri.002G043000' => 'ptr', 'Potri.002G043200' => 'ptr', 'Potri.003G123750' => 'ptr', 'Potri.005G055401' => 'ptr', 'Potri.005G219700' => 'ptr', 'Potri.005G220000' => 'ptr', 'Potri.008G161901' => 'ptr', 'Potri.008G162000' => 'ptr', 'Potri.008G162400' => 'ptr', 'Potri.010G076900' => 'ptr', 'Pp3c12_9180' => 'ppa', 'Pp3c13_19770' => 'ppa', 'Pp3c14_22950' => 'ppa', 'Pp3c16_12160' => 'ppa', 'Pp3c27_7820' => 'ppa', 'Pp3c2_3490' => 'ppa', 'Pp3c3_23700' => 'ppa', 'Pp3c3_36520' => 'ppa', 'Pp3c4_15250' => 'ppa', 'PRCOL_00007002' => 'pco', 'Prupe.1G030600' => 'ppe', 'Prupe.1G030700' => 'ppe', 'Prupe.6G345200' => 'ppe', 'Prupe.8G230300' => 'ppe', 'Prupe.8G230500' => 'ppe', 'Psat3g059600' => 'psa', 'Psat5g200920' => 'psa', 'Psat6g056440' => 'psa', 'Psat6g057360' => 'psa', 'Psat6g134120' => 'psa', 'Psat6g134160' => 'psa', 'Psat7g008640' => 'psa', 'Psat7g185240' => 'psa', 'PSO017G1330' => 'pso', 'PSO063G6097' => 'pso', 'PSO170G0835' => 'pso', 'PSO170G2499' => 'pso', 'PSO210G5058' => 'pso', 'PSO210G6154' => 'pso', 'PSO585G0031' => 'pso', 'PSO832G0264' => 'pso', 'PSO832G4288' => 'pso', 'QL03p027355' => 'qlo', 'QL03p027430' => 'qlo', 'QL04p081380' => 'qlo', 'QL06p015642' => 'qlo', 'QL06p015650' => 'qlo', 'QL06p015686' => 'qlo', 'QL12p042927' => 'qlo', 'QL93p1863_0035' => 'qlo', 'RcHm_v2.0_Chr3g0450581' => 'rch', 'RcHm_v2.0_Chr4g0390371' => 'rch', 'RcHm_v2.0_Chr4g0390381' => 'rch', 'RcHm_v2.0_Chr4g0390491' => 'rch', 'RcHm_v2.0_Chr4g0390501' => 'rch', 'RcHm_v2.0_Chr6g0289231' => 'rch', 'Rhsim04G0190400' => 'rsi', 'Rhsim04G0190500' => 'rsi', 'Rhsim04G0190600' => 'rsi', 'Rhsim13G0031400' => 'rsi', 'Rhsim13G0165600' => 'rsi', 'RhsimUnG0114600' => 'rsi', 'RhsimUnG0114700' => 'rsi', 'Sabra02G0034800' => 'sbr', 'Sabra02G0035100' => 'sbr', 'Sabra05G0168600' => 'sbr', 'Sabra05G0168800' => 'sbr', 'Sabra08G0123700' => 'sbr', 'Sabra10G0031900' => 'sbr', 'Sabra13G0039000' => 'sbr', 'SalBow2G0782' => 'sbo', 'SalBow2G1403' => 'sbo', 'SalBow4G0074' => 'sbo', 'SalBow4G2635' => 'sbo', 'SalBow5G3010' => 'sbo', 'Sc05g0000870' => 'sci', 'Sc05g0000890' => 'sci', 'Sc13g0005000' => 'sci', 'Sc13g0005030' => 'sci', 'Sc19g0003790' => 'sci', 'Sc19g0003800' => 'sci', 'Sed0003467' => 'sed', 'Sed0009355' => 'sed', 'Sed0009894' => 'sed', 'Sed0011972' => 'sed', 'Sed0021483' => 'sed', 'Sed0021750' => 'sed', 'Sed0026279' => 'sed', 'SEGI_05312' => 'sgi', 'SEGI_10112' => 'sgi', 'SEGI_15835' => 'sgi', 'SEGI_30386' => 'sgi', 'SEGI_34122' => 'sgi', 'SEGI_35063' => 'sgi', 'SGA_v2.0_scaffold101G29794' => 'sas', 'SGA_v2.0_scaffold1G00573' => 'sas', 'SGA_v2.0_scaffold79G25637' => 'sas', 'SGA_v2.0_scaffold88G27283' => 'sas', 'SGA_v2.0_scaffold88G27285' => 'sas', 'SGA_v2.0_scaffold88G27331' => 'sas', 'SHI09937' => 'shi', 'SMO119G0302' => 'smo', 'SMO137G0231' => 'smo', 'SMO367G1151' => 'smo', 'Solyc02g082000.3' => 'sly', 'Solyc06g031670.3' => 'sly', 'Solyc06g053810.3' => 'sly', 'Solyc07g025457.1' => 'sly', 'Solyc08g059740.1' => 'sly', 'Solyc08g059750.3' => 'sly', 'Solyc09g083370.3' => 'sly', 'Solyc12g038950.3' => 'sly', 'Sopen02g026630' => 'spe', 'Sopen06g018930' => 'spe', 'Sopen06g018940' => 'spe', 'Sopen08g009460' => 'spe', 'Sopen09g032290' => 'spe', 'Sp1g03080' => 'spa', 'Sp1g03090' => 'spa', 'Sp1g05480' => 'spa', 'Sp2g07860' => 'spa', 'Sp2g08430' => 'spa', 'Sp2g08440' => 'spa', 'Sp2g26200' => 'spa', 'Sp4g13170' => 'spa', 'Sp6g33840' => 'spa', 'SpUn1204_0010' => 'spa', 'TAR365G0908' => 'tar', 'TAR381G1270' => 'tar', 'TAR381G1651' => 'tar', 'TAR625G1131' => 'tar', 'TAR633G0962' => 'tar', 'TAR633G1729' => 'tar', 'TAR633G1864' => 'tar', 'TAR636G0221' => 'tar', 'TAR636G0314' => 'tar', 'TAR636G3202' => 'tar', 'THA.LOC104800805' => 'tha', 'THA.LOC104801096' => 'tha', 'THA.LOC104801555' => 'tha', 'THA.LOC104808491' => 'tha', 'THA.LOC104808595' => 'tha', 'THA.LOC104815985' => 'tha', 'THA.LOC104822250' => 'tha', 'THA.LOC104826071' => 'tha', 'Thecc.01G265200' => 'tca', 'Thecc.01G265300' => 'tca', 'Thecc.01G265700' => 'tca', 'Thecc.03G109100' => 'tca', 'Thecc.04G245900' => 'tca', 'Thecc.04G246000' => 'tca', 'Thhalv10003334m.g' => 'esa', 'Thhalv10005508m.g' => 'esa', 'Thhalv10005643m.g' => 'esa', 'Thhalv10007316m.g' => 'esa', 'Thhalv10009006m.g' => 'esa', 'Thhalv10009309m.g' => 'esa', 'Thhalv10014917m.g' => 'esa', 'Thhalv10014919m.g' => 'esa', 'Thhalv10015393m.g' => 'esa', 'Thhalv10016515m.g' => 'esa', 'Thhalv10029242m.g' => 'esa', 'TPR.G16654' => 'tpr', 'TPR.G20589' => 'tpr', 'TPR.G23029' => 'tpr', 'TPR.G27731' => 'tpr', 'TPR.G28889' => 'tpr', 'TPR.G28899' => 'tpr', 'TPR.G30846' => 'tpr', 'TPR.G5452' => 'tpr', 'TPR.G5713' => 'tpr', 'TPR.G9046' => 'tpr', 'TPR.G9061' => 'tpr', 'TWI09G1075' => 'twi', 'TWI12G0806' => 'twi', 'TWI18G0108' => 'twi', 'TWI53G1361' => 'twi', 'TWI73G0185' => 'twi', 'TWI73G0427' => 'twi', 'unitig_37.g12001' => 'ugi', 'unitig_747.g21660' => 'ugi', 'unitig_748.g7232' => 'ugi', 'unitig_748.g7315' => 'ugi', 'unitig_85.g27262' => 'ugi', 'unitig_92.g28220' => 'ugi', 'vmacro02632' => 'vma', 'vmacro08410' => 'vma', 'vmacro08411' => 'vma', 'vmacro15407' => 'vma', 'VMungo0251G3619' => 'vmu', 'VMungo0720G1204' => 'vmu', 'VMungo0720G1918' => 'vmu', 'VMungo0720G2387' => 'vmu', 'VMungo0720G2961' => 'vmu', 'VMungo1215G2154' => 'vmu', 'VMungo1383G2411' => 'vmu', 'Zm00001eb051130' => 'zma', 'Zm00001eb116830' => 'zma', 'Zm00001eb116850' => 'zma', 'Zm00001eb151740' => 'zma', 'Zm00001eb292360' => 'zma', 'Zm00001eb301640' => 'zma' ) $gf_id = 'HOM05D000856' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000856' ) $data_identifier = 'HOM05D000856' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 13, 'ath' => (int) 10, 'atr' => (int) 1, 'acertr' => (int) 8, 'cqu' => (int) 6, 'bca' => (int) 21, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 11, 'car' => (int) 9, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 8, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 5, 'fan' => (int) 16, 'fve' => (int) 6, 'gma' => (int) 11, 'ghi' => (int) 19, 'gra' => (int) 9, 'vvi' => (int) 7, 'han' => (int) 17, 'cav' => (int) 5, 'hma' => (int) 2, 'vpl' => (int) 2, 'sun' => (int) 7, 'lal' => (int) 9, 'lja' => (int) 5, 'lonja' => (int) 9, 'lsa' => (int) 5, 'mes' => (int) 8, 'mpo' => (int) 3, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 10, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 15, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 9, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 9, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 6, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 5, 'spa' => (int) 10, 'tar' => (int) 10, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 11, 'tpr' => (int) 11, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 4, 'vmu' => (int) 7, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb301640' $species_info = array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ) $local_species = 'dca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000856', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p00010' => 'bna', 'A03p04160' => 'bna', 'A03p17160' => 'bna', 'A04p23370' => 'bna', 'A05p14860' => 'bna', 'A08p37020' => 'bna', 'A09p08050' => 'bna', 'A09p66800' => 'bna', 'A09p67940' => 'bna', 'A10p02680' => 'bna', 'A10p05320' => 'bna', 'Aa31LG1G20560' => 'aar', 'Aa31LG1G20610' => 'aar', 'Aa31LG1G7810' => 'aar', 'Aa31LG5G3590' => 'aar', 'Aa31LG5G6140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3819' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4683' => 'aag', 'Actinidia04480' => 'ach', 'Actinidia05466' => 'ach', 'Actinidia08445' => 'ach', 'Actinidia21170' => 'ach', 'Actinidia24812' => 'ach', 'Actinidia24951' => 'ach', 'Actinidia40088' => 'ach', 'Ah.02g111660' => 'amhyb', 'Ah.11g048900' => 'amhyb', 'Ah.11g049910' => 'amhyb', 'AL1G13870' => 'aly', 'AL1G13880' => 'aly', 'AL1G16760' => 'aly', 'AL390U10020' => 'aly', 'AL4G25520' => 'aly', 'AL6G19890' => 'aly', 'AL6G19900' => 'aly', 'AL6G19910' => 'aly', 'AL8G40100' => 'aly', 'Aqoxy2G03562' => 'aox', 'Aqoxy5G00316' => 'aox', 'Aqoxy5G00926' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1628KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1H403S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2FU6SJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.882I6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8YRY2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YN1SN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AF70II' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZA8L1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F916KL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHRD8H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KTZ8QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S22EMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8M29T' => 'arhy', 'AT1G04270' => 'ath', 'AT1G04280' => 'ath', 'AT1G06750' => 'ath', 'AT1G33850' => 'ath', 'AT2G30630' => 'ath', 'AT5G09490' => 'ath', 'AT5G09500' => 'ath', 'AT5G09510' => 'ath', 'AT5G43640' => 'ath', 'AT5G63070' => 'ath', 'ATR0605G315' => 'atr', 'Atru.chr11.175' => 'acertr', 'Atru.chr11.653' => 'acertr', 'Atru.chr3.1616' => 'acertr', 'Atru.chr4.2230' => 'acertr', 'Atru.chr4.2232' => 'acertr', 'Atru.chr5.1598' => 'acertr', 'Atru.chr5.1600' => 'acertr', 'Atru.chr5.2188' => 'acertr', 'AUR62008326' => 'cqu', 'AUR62011922' => 'cqu', 'AUR62011924' => 'cqu', 'AUR62021771' => 'cqu', 'AUR62032237' => 'cqu', 'AUR62032240' => 'cqu', 'BcaB01g05572' => 'bca', 'BcaB02g10337' => 'bca', 'BcaB04g19944' => 'bca', 'BcaB05g21548' => 'bca', 'BcaB05g21549' => 'bca', 'BcaB05g23227' => 'bca', 'BcaB06g26256' => 'bca', 'BcaB06g26257' => 'bca', 'BcaB06g28379' => 'bca', 'BcaC02g11159' => 'bca', 'BcaC03g13258' => 'bca', 'BcaC03g13259' => 'bca', 'BcaC05g24456' => 'bca', 'BcaC05g24457' => 'bca', 'BcaC07g36922' => 'bca', 'BcaC07g36923' => 'bca', 'BcaC07g42050' => 'bca', 'BcaC07g42176' => 'bca', 'BcaC07g42195' => 'bca', 'BcaC07g42196' => 'bca', 'BcaNung06674' => 'bca', 'BolC2t06351H' => 'bol', 'BolC2t06352H' => 'bol', 'BolC3t12993H' => 'bol', 'BolC4t23525H' => 'bol', 'BolC4t27475H' => 'bol', 'BolC5t29025H' => 'bol', 'BolC5t29026H' => 'bol', 'BolC8t46898H' => 'bol', 'BolC8t46899H' => 'bol', 'BolC8t52630H' => 'bol', 'BolC8t52765H' => 'bol', 'BolC9t53824H' => 'bol', 'BraA03t09760Z' => 'bra', 'BraA03t10990Z' => 'bra', 'BraA05t20413Z' => 'bra', 'BraA08t35602Z' => 'bra', 'BraA09t36458Z' => 'bra', 'BraA09t42018Z' => 'bra', 'BraA09t42129Z' => 'bra', 'BraA10t42536Z' => 'bra', 'BraA10t42537Z' => 'bra', 'C01p10690' => 'bna', 'C02p03890' => 'bna', 'C02p03900' => 'bna', 'C03p04620' => 'bna', 'C04p19870' => 'bna', 'C04p59670' => 'bna', 'C05p02460' => 'bna', 'C05p02470' => 'bna', 'C08p00980' => 'bna', 'C08p00990' => 'bna', 'C08p51030' => 'bna', 'C08p52360' => 'bna', 'C09p09120' => 'bna', 'CAN.G19.15' => 'can', 'CAN.G251.10' => 'can', 'CAN.G251.9' => 'can', 'CAN.G398.24' => 'can', 'CAN.G410.32' => 'can', 'CAN.G881.2' => 'can', 'CANSAT01G3025' => 'cansat', 'CANSAT78G1211' => 'cansat', 'CANSAT78G1218' => 'cansat', 'CANSAT78G1521' => 'cansat', 'CANSAT78G1670' => 'cansat', 'CARHR003600' => 'chi', 'CARHR003610' => 'chi', 'CARHR006290' => 'chi', 'CARHR006430' => 'chi', 'CARHR124110' => 'chi', 'CARHR203870' => 'chi', 'CARHR203880' => 'chi', 'CARHR203890' => 'chi', 'CARHR276880' => 'chi', 'Carub.0001s0346' => 'cru', 'Carub.0001s0347' => 'cru', 'Carub.0001s0607' => 'cru', 'Carub.0003s2768' => 'cru', 'Carub.0003s2769' => 'cru', 'Carub.0004s1178' => 'cru', 'Carub.0006s0806' => 'cru', 'Carub.0006s0807' => 'cru', 'Carub.0006s0808' => 'cru', 'Carub.0008s0501' => 'cru', 'Carub.0008s2379' => 'cru', 'Ca_08655_v3' => 'car', 'Ca_08922_v3' => 'car', 'Ca_08923_v3' => 'car', 'Ca_09119_v3' => 'car', 'Ca_09703_v3' => 'car', 'Ca_09705_v3' => 'car', 'Ca_09835_v3' => 'car', 'Ca_26403_v3' => 'car', 'Ca_30719_v3' => 'car', 'CBR_g17958' => 'cbr', 'CBR_g40516' => 'cbr', 'Cc00_g05350' => 'ccan', 'Cc01_g18690' => 'ccan', 'Cc03_g04830' => 'ccan', 'Cc03_g04850' => 'ccan', 'CDE02G4469' => 'cde', 'CDE06G0883' => 'cde', 'CDE06G1295' => 'cde', 'CDE06G1390' => 'cde', 'CDE07G0584' => 'cde', 'CDE07G1084' => 'cde', 'CDE08G1259' => 'cde', 'Cfa002341' => 'cfa', 'Cfa024337' => 'cfa', 'Ciclev10004749m.g' => 'ccl', 'Ciclev10006127m.g' => 'ccl', 'Ciclev10019720m.g' => 'ccl', 'Ciclev10022652m.g' => 'ccl', 'CiPaw.01G190400' => 'cil', 'CiPaw.01G190500' => 'cil', 'CiPaw.02G116400' => 'cil', 'CiPaw.02G116500' => 'cil', 'CiPaw.04G183000' => 'cil', 'CiPaw.04G183300' => 'cil', 'ClCG05G004610' => 'cla', 'ClCG05G004620' => 'cla', 'ClCG06G006730' => 'cla', 'ClCG06G006740' => 'cla', 'ClCG11G003690' => 'cla', 'COL.COLO4_08276' => 'col', 'COL.COLO4_08277' => 'col', 'COL.COLO4_15787' => 'col', 'COL.COLO4_15789' => 'col', 'Cpa.g.c44815' => 'cpa', 'Cpa.g.sc52.144' => 'cpa', 'Cpa.g.sc58.46' => 'cpa', 'Cpa.g.sc58.47' => 'cpa', 'Cre08.g360900' => 'cre', 'CsaV3_2G013030' => 'csa', 'CsaV3_2G013050' => 'csa', 'CsaV3_2G015620' => 'csa', 'CsaV3_3G012590' => 'csa', 'CsaV3_3G012600' => 'csa', 'CSS0001641' => 'camsi', 'CSS0008310' => 'camsi', 'CSS0013011' => 'camsi', 'CSS0017147' => 'camsi', 'CSS0022970' => 'camsi', 'CSS0025655' => 'camsi', 'CSS0028665' => 'camsi', 'CSS0029117' => 'camsi', 'CSS0032024' => 'camsi', 'CSS0039681' => 'camsi', 'CSS0046516' => 'camsi', 'CSS0050307' => 'camsi', 'DCAR_005871' => 'dca', 'DCAR_007342' => 'dca', 'DCAR_024228' => 'dca', 'DCAR_027277' => 'dca', 'DCAR_030718' => 'dca', 'Dinv20287' => 'din', 'Dinv22461' => 'din', 'Dinv22464' => 'din', 'Dinv29912' => 'din', 'Dinv29913' => 'din', 'Dinv34580' => 'din', 'Dinv34582' => 'din', 'Dinv44632' => 'din', 'Duzib052G0266' => 'dzi', 'Duzib133G0907' => 'dzi', 'Duzib133G1034' => 'dzi', 'Duzib138G0207' => 'dzi', 'Duzib138G0491' => 'dzi', 'Duzib151G0812' => 'dzi', 'Duzib151G1166' => 'dzi', 'Duzib168G0192' => 'dzi', 'Duzib211G0077' => 'dzi', 'Duzib212G0429' => 'dzi', 'Duzib212G0472' => 'dzi', 'ECA233G2617' => 'eca', 'ECA236G4188' => 'eca', 'ECA240G0936' => 'eca', 'ECA240G1129' => 'eca', 'ECA247G0623' => 'eca', 'EL10Ac5g10451' => 'bvu', 'EL10Ac5g10453' => 'bvu', 'EL10Ac5g10894' => 'bvu', 'Eucgr.H00192' => 'egr', 'Eucgr.H00193' => 'egr', 'Eucgr.H00194' => 'egr', 'Eucgr.J01562' => 'egr', 'Eucgr.K03301' => 'egr', 'FAN02G0632' => 'fan', 'FAN05G5378' => 'fan', 'FAN09G3247' => 'fan', 'FAN12G0435' => 'fan', 'FAN12G2426' => 'fan', 'FAN14G1707' => 'fan', 'FAN14G4725' => 'fan', 'FAN15G2071' => 'fan', 'FAN17G3065' => 'fan', 'FAN19G1376' => 'fan', 'FAN20G0354' => 'fan', 'FAN20G2429' => 'fan', 'FAN20G2658' => 'fan', 'FAN24G2343' => 'fan', 'FAN27G2362' => 'fan', 'FAN28G1765' => 'fan', 'FvH4_1g16020' => 'fve', 'FvH4_2g04890' => 'fve', 'FvH4_2g22270' => 'fve', 'FvH4_4g02630' => 'fve', 'FvH4_4g02640' => 'fve', 'FvH4_6g02650' => 'fve', 'Glyma.02G140600' => 'gma', 'Glyma.03G159900' => 'gma', 'Glyma.05G234800' => 'gma', 'Glyma.07G269600' => 'gma', 'Glyma.08G042300' => 'gma', 'Glyma.10G033500' => 'gma', 'Glyma.10G185200' => 'gma', 'Glyma.17G004300' => 'gma', 'Glyma.19G161900' => 'gma', 'Glyma.20G205100' => 'gma', 'Glyma.20G205200' => 'gma', 'Gohir.A01G139101' => 'ghi', 'Gohir.A02G035600' => 'ghi', 'Gohir.A02G117901' => 'ghi', 'Gohir.A07G210100' => 'ghi', 'Gohir.A07G210200' => 'ghi', 'Gohir.A08G061100' => 'ghi', 'Gohir.A09G223000' => 'ghi', 'Gohir.A09G223100' => 'ghi', 'Gohir.A10G113900' => 'ghi', 'Gohir.A10G114000' => 'ghi', 'Gohir.D02G042300' => 'ghi', 'Gohir.D07G216100' => 'ghi', 'Gohir.D07G216200' => 'ghi', 'Gohir.D08G070400' => 'ghi', 'Gohir.D09G225000' => 'ghi', 'Gohir.D09G225100' => 'ghi', 'Gohir.D10G152300' => 'ghi', 'Gohir.D10G153200' => 'ghi', 'Gohir.D11G133701' => 'ghi', 'Gorai.004G074100' => 'gra', 'Gorai.005G046800' => 'gra', 'Gorai.006G246500' => 'gra', 'Gorai.006G246600' => 'gra', 'Gorai.007G142900' => 'gra', 'Gorai.011G171000' => 'gra', 'Gorai.011G171100' => 'gra', 'Gorai.013G104300' => 'gra', 'Gorai.013G104400' => 'gra', 'GSVIVG01000754001' => 'vvi', 'GSVIVG01000756001' => 'vvi', 'GSVIVG01010903001' => 'vvi', 'GSVIVG01017623001' => 'vvi', 'GSVIVG01018113001' => 'vvi', 'GSVIVG01018116001' => 'vvi', 'GSVIVG01018118001' => 'vvi', 'HanXRQChr03g0076211' => 'han', 'HanXRQChr03g0092431' => 'han', 'HanXRQChr03g0092441' => 'han', 'HanXRQChr03g0092591' => 'han', 'HanXRQChr03g0092671' => 'han', 'HanXRQChr03g0092681' => 'han', 'HanXRQChr03g0092691' => 'han', 'HanXRQChr03g0092701' => 'han', 'HanXRQChr03g0092721' => 'han', 'HanXRQChr03g0092731' => 'han', 'HanXRQChr04g0113681' => 'han', 'HanXRQChr10g0281371' => 'han', 'HanXRQChr11g0337141' => 'han', 'HanXRQChr13g0424521' => 'han', 'HanXRQChr13g0424531' => 'han', 'HanXRQChr13g0424541' => 'han', 'HanXRQChr16g0498221' => 'han', 'Haze_04377' => 'cav', 'Haze_11298' => 'cav', 'Haze_24547' => 'cav', 'Haze_24550' => 'cav', 'Haze_26587' => 'cav', 'Hma1.2p1_0650F.1_g195410' => 'hma', 'Hma1.2p1_0893F.1_g233470' => 'hma', 'HPP92_006508' => 'vpl', 'HPP92_024780' => 'vpl', 'Hund02688' => 'sun', 'Hund09380' => 'sun', 'Hund09381' => 'sun', 'Hund09832' => 'sun', 'Hund09833' => 'sun', 'Hund11351' => 'sun', 'Hund11513' => 'sun', 'Lalb_Chr06g0162591' => 'lal', 'Lalb_Chr06g0162601' => 'lal', 'Lalb_Chr06g0169321' => 'lal', 'Lalb_Chr09g0330951' => 'lal', 'Lalb_Chr16g0387631' => 'lal', 'Lalb_Chr21g0306241' => 'lal', 'Lalb_Chr25g0290051' => 'lal', 'Lalb_Chr25g0290061' => 'lal', 'Lalb_Chr25g0290071' => 'lal', 'Lj1g0003876' => 'lja', 'Lj1P1207T36' => 'lonja', 'Lj2C1156G12' => 'lonja', 'Lj3A793G39' => 'lonja', 'Lj3C580G2' => 'lonja', 'Lj3C780G2' => 'lonja', 'Lj3C780T4' => 'lonja', 'Lj3C793G9' => 'lonja', 'Lj4g0012960' => 'lja', 'Lj5g0021252' => 'lja', 'Lj5g0021484' => 'lja', 'Lj5g0024528' => 'lja', 'Lj6A399T12' => 'lonja', 'Lj6A656G65' => 'lonja', 'Lsat_1_v5_gn_3_125500' => 'lsa', 'Lsat_1_v5_gn_3_125540' => 'lsa', 'Lsat_1_v5_gn_5_72701' => 'lsa', 'Lsat_1_v5_gn_8_91560' => 'lsa', 'Lsat_1_v5_gn_9_9640' => 'lsa', 'Manes.01G200600' => 'mes', 'Manes.01G200700' => 'mes', 'Manes.03G168900' => 'mes', 'Manes.03G169000' => 'mes', 'Manes.05G085801' => 'mes', 'Manes.05G086200' => 'mes', 'Manes.15G036700' => 'mes', 'Manes.15G036900' => 'mes', 'Mapoly0004s0172' => 'mpo', 'Mapoly0023s0001' => 'mpo', 'Mapoly0142s0012' => 'mpo', 'MBI01_g32854_MAGBIO' => 'mbi', 'MBI11_g24427_MAGBIO' => 'mbi', 'MBI11_g47319_MAGBIO' => 'mbi', 'MCO01G433' => 'mco', 'MD00G1187800' => 'mdo', 'MD04G1226500' => 'mdo', 'MD05G1203900' => 'mdo', 'MD10G1191100' => 'mdo', 'MD12G1243500' => 'mdo', 'MD13G1207000' => 'mdo', 'MD13G1207100' => 'mdo', 'MD16G1208600' => 'mdo', 'Medtr1g050352' => 'mtr', 'Medtr1g070385' => 'mtr', 'Medtr1g070450' => 'mtr', 'Medtr1g075200' => 'mtr', 'Medtr1g075250' => 'mtr', 'Medtr1g075260' => 'mtr', 'Medtr1g475250' => 'mtr', 'Medtr4g075450' => 'mtr', 'Medtr7g096300' => 'mtr', 'Medtr8g105110' => 'mtr', 'MELO3C006470.2' => 'cme', 'MELO3C006471.2' => 'cme', 'MELO3C020772.2' => 'cme', 'MELO3C026780.2' => 'cme', 'MELO3C026781.2' => 'cme', 'Migut.D00390' => 'egut', 'Migut.G00435' => 'egut', 'Migut.G00436' => 'egut', 'Migut.G00718' => 'egut', 'MSTRG.21891' => 'ama', 'MSTRG.26910' => 'ama', 'MSTRG.4099' => 'ama', 'MSTRG.9925' => 'ama', 'Nitab4.5_0000165g0010' => 'nta', 'Nitab4.5_0000209g0180' => 'nta', 'Nitab4.5_0000244g0440' => 'nta', 'Nitab4.5_0000525g0220' => 'nta', 'Nitab4.5_0001597g0020' => 'nta', 'Nitab4.5_0001878g0040' => 'nta', 'Nitab4.5_0001878g0060' => 'nta', 'Nitab4.5_0002838g0100' => 'nta', 'Nitab4.5_0002838g0120' => 'nta', 'Nitab4.5_0004798g0030' => 'nta', 'Nitab4.5_0005420g0010' => 'nta', 'Nitab4.5_0005507g0010' => 'nta', 'Nitab4.5_0005574g0020' => 'nta', 'Nitab4.5_0005838g0010' => 'nta', 'Nitab4.5_0010580g0020' => 'nta', 'Nn1g02599' => 'nnu', 'Nn1g02608' => 'nnu', 'Nn3g17742' => 'nnu', 'Nn3g19534' => 'nnu', 'Nn3g19535' => 'nnu', 'Oeu008790.1' => 'oeu', 'Oeu008792.1' => 'oeu', 'Oeu032590.1' => 'oeu', 'Oeu035349.1' => 'oeu', 'Oeu049791.1' => 'oeu', 'Os01g0774500' => 'osa', 'Os03g0628800' => 'osa', 'Os03g0798600' => 'osa', 'Os05g0508800' => 'osa', 'Peaxi162Scf00036g02018' => 'pax', 'Peaxi162Scf00578g00032' => 'pax', 'Peaxi162Scf00578g00317' => 'pax', 'Peaxi162Scf00785g00114' => 'pax', 'Peaxi162Scf00813g00119' => 'pax', 'Peaxi162Scf00906g00227' => 'pax', 'PGR004G0875' => 'pgr', 'PGR004G2424' => 'pgr', 'PGR031G1239' => 'pgr', 'PGR031G2474' => 'pgr', 'PGR044G0423' => 'pgr', 'PGSC0003DMG400001128' => 'stu', 'PGSC0003DMG400007336' => 'stu', 'PGSC0003DMG400016318' => 'stu', 'PGSC0003DMG400016319' => 'stu', 'PGSC0003DMG400018074' => 'stu', 'Phvul.001G157700' => 'pvu', 'Phvul.002G148550' => 'pvu', 'Phvul.002G320200' => 'pvu', 'Phvul.003G089200' => 'pvu', 'Phvul.007G126000' => 'pvu', 'Phvul.007G126100' => 'pvu', 'Phvul.007G178000' => 'pvu', 'Phvul.007G178200' => 'pvu', 'Potri.002G043000' => 'ptr', 'Potri.002G043200' => 'ptr', 'Potri.003G123750' => 'ptr', 'Potri.005G055401' => 'ptr', 'Potri.005G219700' => 'ptr', 'Potri.005G220000' => 'ptr', 'Potri.008G161901' => 'ptr', 'Potri.008G162000' => 'ptr', 'Potri.008G162400' => 'ptr', 'Potri.010G076900' => 'ptr', 'Pp3c12_9180' => 'ppa', 'Pp3c13_19770' => 'ppa', 'Pp3c14_22950' => 'ppa', 'Pp3c16_12160' => 'ppa', 'Pp3c27_7820' => 'ppa', 'Pp3c2_3490' => 'ppa', 'Pp3c3_23700' => 'ppa', 'Pp3c3_36520' => 'ppa', 'Pp3c4_15250' => 'ppa', 'PRCOL_00007002' => 'pco', 'Prupe.1G030600' => 'ppe', 'Prupe.1G030700' => 'ppe', 'Prupe.6G345200' => 'ppe', 'Prupe.8G230300' => 'ppe', 'Prupe.8G230500' => 'ppe', 'Psat3g059600' => 'psa', 'Psat5g200920' => 'psa', 'Psat6g056440' => 'psa', 'Psat6g057360' => 'psa', 'Psat6g134120' => 'psa', 'Psat6g134160' => 'psa', 'Psat7g008640' => 'psa', 'Psat7g185240' => 'psa', 'PSO017G1330' => 'pso', 'PSO063G6097' => 'pso', 'PSO170G0835' => 'pso', 'PSO170G2499' => 'pso', 'PSO210G5058' => 'pso', 'PSO210G6154' => 'pso', 'PSO585G0031' => 'pso', 'PSO832G0264' => 'pso', 'PSO832G4288' => 'pso', 'QL03p027355' => 'qlo', 'QL03p027430' => 'qlo', 'QL04p081380' => 'qlo', 'QL06p015642' => 'qlo', 'QL06p015650' => 'qlo', 'QL06p015686' => 'qlo', 'QL12p042927' => 'qlo', 'QL93p1863_0035' => 'qlo', 'RcHm_v2.0_Chr3g0450581' => 'rch', 'RcHm_v2.0_Chr4g0390371' => 'rch', 'RcHm_v2.0_Chr4g0390381' => 'rch', 'RcHm_v2.0_Chr4g0390491' => 'rch', 'RcHm_v2.0_Chr4g0390501' => 'rch', 'RcHm_v2.0_Chr6g0289231' => 'rch', 'Rhsim04G0190400' => 'rsi', 'Rhsim04G0190500' => 'rsi', 'Rhsim04G0190600' => 'rsi', 'Rhsim13G0031400' => 'rsi', 'Rhsim13G0165600' => 'rsi', 'RhsimUnG0114600' => 'rsi', 'RhsimUnG0114700' => 'rsi', 'Sabra02G0034800' => 'sbr', 'Sabra02G0035100' => 'sbr', 'Sabra05G0168600' => 'sbr', 'Sabra05G0168800' => 'sbr', 'Sabra08G0123700' => 'sbr', 'Sabra10G0031900' => 'sbr', 'Sabra13G0039000' => 'sbr', 'SalBow2G0782' => 'sbo', 'SalBow2G1403' => 'sbo', 'SalBow4G0074' => 'sbo', 'SalBow4G2635' => 'sbo', 'SalBow5G3010' => 'sbo', 'Sc05g0000870' => 'sci', 'Sc05g0000890' => 'sci', 'Sc13g0005000' => 'sci', 'Sc13g0005030' => 'sci', 'Sc19g0003790' => 'sci', 'Sc19g0003800' => 'sci', 'Sed0003467' => 'sed', 'Sed0009355' => 'sed', 'Sed0009894' => 'sed', 'Sed0011972' => 'sed', 'Sed0021483' => 'sed', 'Sed0021750' => 'sed', 'Sed0026279' => 'sed', 'SEGI_05312' => 'sgi', 'SEGI_10112' => 'sgi', 'SEGI_15835' => 'sgi', 'SEGI_30386' => 'sgi', 'SEGI_34122' => 'sgi', 'SEGI_35063' => 'sgi', 'SGA_v2.0_scaffold101G29794' => 'sas', 'SGA_v2.0_scaffold1G00573' => 'sas', 'SGA_v2.0_scaffold79G25637' => 'sas', 'SGA_v2.0_scaffold88G27283' => 'sas', 'SGA_v2.0_scaffold88G27285' => 'sas', 'SGA_v2.0_scaffold88G27331' => 'sas', 'SHI09937' => 'shi', 'SMO119G0302' => 'smo', 'SMO137G0231' => 'smo', 'SMO367G1151' => 'smo', 'Solyc02g082000.3' => 'sly', 'Solyc06g031670.3' => 'sly', 'Solyc06g053810.3' => 'sly', 'Solyc07g025457.1' => 'sly', 'Solyc08g059740.1' => 'sly', 'Solyc08g059750.3' => 'sly', 'Solyc09g083370.3' => 'sly', 'Solyc12g038950.3' => 'sly', 'Sopen02g026630' => 'spe', 'Sopen06g018930' => 'spe', 'Sopen06g018940' => 'spe', 'Sopen08g009460' => 'spe', 'Sopen09g032290' => 'spe', 'Sp1g03080' => 'spa', 'Sp1g03090' => 'spa', 'Sp1g05480' => 'spa', 'Sp2g07860' => 'spa', 'Sp2g08430' => 'spa', 'Sp2g08440' => 'spa', 'Sp2g26200' => 'spa', 'Sp4g13170' => 'spa', 'Sp6g33840' => 'spa', 'SpUn1204_0010' => 'spa', 'TAR365G0908' => 'tar', 'TAR381G1270' => 'tar', 'TAR381G1651' => 'tar', 'TAR625G1131' => 'tar', 'TAR633G0962' => 'tar', 'TAR633G1729' => 'tar', 'TAR633G1864' => 'tar', 'TAR636G0221' => 'tar', 'TAR636G0314' => 'tar', 'TAR636G3202' => 'tar', 'THA.LOC104800805' => 'tha', 'THA.LOC104801096' => 'tha', 'THA.LOC104801555' => 'tha', 'THA.LOC104808491' => 'tha', 'THA.LOC104808595' => 'tha', 'THA.LOC104815985' => 'tha', 'THA.LOC104822250' => 'tha', 'THA.LOC104826071' => 'tha', 'Thecc.01G265200' => 'tca', 'Thecc.01G265300' => 'tca', 'Thecc.01G265700' => 'tca', 'Thecc.03G109100' => 'tca', 'Thecc.04G245900' => 'tca', 'Thecc.04G246000' => 'tca', 'Thhalv10003334m.g' => 'esa', 'Thhalv10005508m.g' => 'esa', 'Thhalv10005643m.g' => 'esa', 'Thhalv10007316m.g' => 'esa', 'Thhalv10009006m.g' => 'esa', 'Thhalv10009309m.g' => 'esa', 'Thhalv10014917m.g' => 'esa', 'Thhalv10014919m.g' => 'esa', 'Thhalv10015393m.g' => 'esa', 'Thhalv10016515m.g' => 'esa', 'Thhalv10029242m.g' => 'esa', 'TPR.G16654' => 'tpr', 'TPR.G20589' => 'tpr', 'TPR.G23029' => 'tpr', 'TPR.G27731' => 'tpr', 'TPR.G28889' => 'tpr', 'TPR.G28899' => 'tpr', 'TPR.G30846' => 'tpr', 'TPR.G5452' => 'tpr', 'TPR.G5713' => 'tpr', 'TPR.G9046' => 'tpr', 'TPR.G9061' => 'tpr', 'TWI09G1075' => 'twi', 'TWI12G0806' => 'twi', 'TWI18G0108' => 'twi', 'TWI53G1361' => 'twi', 'TWI73G0185' => 'twi', 'TWI73G0427' => 'twi', 'unitig_37.g12001' => 'ugi', 'unitig_747.g21660' => 'ugi', 'unitig_748.g7232' => 'ugi', 'unitig_748.g7315' => 'ugi', 'unitig_85.g27262' => 'ugi', 'unitig_92.g28220' => 'ugi', 'vmacro02632' => 'vma', 'vmacro08410' => 'vma', 'vmacro08411' => 'vma', 'vmacro15407' => 'vma', 'VMungo0251G3619' => 'vmu', 'VMungo0720G1204' => 'vmu', 'VMungo0720G1918' => 'vmu', 'VMungo0720G2387' => 'vmu', 'VMungo0720G2961' => 'vmu', 'VMungo1215G2154' => 'vmu', 'VMungo1383G2411' => 'vmu', 'Zm00001eb051130' => 'zma', 'Zm00001eb116830' => 'zma', 'Zm00001eb116850' => 'zma', 'Zm00001eb151740' => 'zma', 'Zm00001eb292360' => 'zma', 'Zm00001eb301640' => 'zma' ), 'gf_id' => 'HOM05D000856', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000856' ), 'data_identifier' => 'HOM05D000856', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000856', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p00010' => 'bna', 'A03p04160' => 'bna', 'A03p17160' => 'bna', 'A04p23370' => 'bna', 'A05p14860' => 'bna', 'A08p37020' => 'bna', 'A09p08050' => 'bna', 'A09p66800' => 'bna', 'A09p67940' => 'bna', 'A10p02680' => 'bna', 'A10p05320' => 'bna', 'Aa31LG1G20560' => 'aar', 'Aa31LG1G20610' => 'aar', 'Aa31LG1G7810' => 'aar', 'Aa31LG5G3590' => 'aar', 'Aa31LG5G6140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3819' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4683' => 'aag', 'Actinidia04480' => 'ach', 'Actinidia05466' => 'ach', 'Actinidia08445' => 'ach', 'Actinidia21170' => 'ach', 'Actinidia24812' => 'ach', 'Actinidia24951' => 'ach', 'Actinidia40088' => 'ach', 'Ah.02g111660' => 'amhyb', 'Ah.11g048900' => 'amhyb', 'Ah.11g049910' => 'amhyb', 'AL1G13870' => 'aly', 'AL1G13880' => 'aly', 'AL1G16760' => 'aly', 'AL390U10020' => 'aly', 'AL4G25520' => 'aly', 'AL6G19890' => 'aly', 'AL6G19900' => 'aly', 'AL6G19910' => 'aly', 'AL8G40100' => 'aly', 'Aqoxy2G03562' => 'aox', 'Aqoxy5G00316' => 'aox', 'Aqoxy5G00926' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1628KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1H403S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2FU6SJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.882I6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8YRY2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YN1SN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AF70II' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZA8L1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F916KL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHRD8H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KTZ8QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S22EMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8M29T' => 'arhy', 'AT1G04270' => 'ath', 'AT1G04280' => 'ath', 'AT1G06750' => 'ath', 'AT1G33850' => 'ath', 'AT2G30630' => 'ath', 'AT5G09490' => 'ath', 'AT5G09500' => 'ath', 'AT5G09510' => 'ath', 'AT5G43640' => 'ath', 'AT5G63070' => 'ath', 'ATR0605G315' => 'atr', 'Atru.chr11.175' => 'acertr', 'Atru.chr11.653' => 'acertr', 'Atru.chr3.1616' => 'acertr', 'Atru.chr4.2230' => 'acertr', 'Atru.chr4.2232' => 'acertr', 'Atru.chr5.1598' => 'acertr', 'Atru.chr5.1600' => 'acertr', 'Atru.chr5.2188' => 'acertr', 'AUR62008326' => 'cqu', 'AUR62011922' => 'cqu', 'AUR62011924' => 'cqu', 'AUR62021771' => 'cqu', 'AUR62032237' => 'cqu', 'AUR62032240' => 'cqu', 'BcaB01g05572' => 'bca', 'BcaB02g10337' => 'bca', 'BcaB04g19944' => 'bca', 'BcaB05g21548' => 'bca', 'BcaB05g21549' => 'bca', 'BcaB05g23227' => 'bca', 'BcaB06g26256' => 'bca', 'BcaB06g26257' => 'bca', 'BcaB06g28379' => 'bca', 'BcaC02g11159' => 'bca', 'BcaC03g13258' => 'bca', 'BcaC03g13259' => 'bca', 'BcaC05g24456' => 'bca', 'BcaC05g24457' => 'bca', 'BcaC07g36922' => 'bca', 'BcaC07g36923' => 'bca', 'BcaC07g42050' => 'bca', 'BcaC07g42176' => 'bca', 'BcaC07g42195' => 'bca', 'BcaC07g42196' => 'bca', 'BcaNung06674' => 'bca', 'BolC2t06351H' => 'bol', 'BolC2t06352H' => 'bol', 'BolC3t12993H' => 'bol', 'BolC4t23525H' => 'bol', 'BolC4t27475H' => 'bol', 'BolC5t29025H' => 'bol', 'BolC5t29026H' => 'bol', 'BolC8t46898H' => 'bol', 'BolC8t46899H' => 'bol', 'BolC8t52630H' => 'bol', 'BolC8t52765H' => 'bol', 'BolC9t53824H' => 'bol', 'BraA03t09760Z' => 'bra', 'BraA03t10990Z' => 'bra', 'BraA05t20413Z' => 'bra', 'BraA08t35602Z' => 'bra', 'BraA09t36458Z' => 'bra', 'BraA09t42018Z' => 'bra', 'BraA09t42129Z' => 'bra', 'BraA10t42536Z' => 'bra', 'BraA10t42537Z' => 'bra', 'C01p10690' => 'bna', 'C02p03890' => 'bna', 'C02p03900' => 'bna', 'C03p04620' => 'bna', 'C04p19870' => 'bna', 'C04p59670' => 'bna', 'C05p02460' => 'bna', 'C05p02470' => 'bna', 'C08p00980' => 'bna', 'C08p00990' => 'bna', 'C08p51030' => 'bna', 'C08p52360' => 'bna', 'C09p09120' => 'bna', 'CAN.G19.15' => 'can', 'CAN.G251.10' => 'can', 'CAN.G251.9' => 'can', 'CAN.G398.24' => 'can', 'CAN.G410.32' => 'can', 'CAN.G881.2' => 'can', 'CANSAT01G3025' => 'cansat', 'CANSAT78G1211' => 'cansat', 'CANSAT78G1218' => 'cansat', 'CANSAT78G1521' => 'cansat', 'CANSAT78G1670' => 'cansat', 'CARHR003600' => 'chi', 'CARHR003610' => 'chi', 'CARHR006290' => 'chi', 'CARHR006430' => 'chi', 'CARHR124110' => 'chi', 'CARHR203870' => 'chi', 'CARHR203880' => 'chi', 'CARHR203890' => 'chi', 'CARHR276880' => 'chi', 'Carub.0001s0346' => 'cru', 'Carub.0001s0347' => 'cru', 'Carub.0001s0607' => 'cru', 'Carub.0003s2768' => 'cru', 'Carub.0003s2769' => 'cru', 'Carub.0004s1178' => 'cru', 'Carub.0006s0806' => 'cru', 'Carub.0006s0807' => 'cru', 'Carub.0006s0808' => 'cru', 'Carub.0008s0501' => 'cru', 'Carub.0008s2379' => 'cru', 'Ca_08655_v3' => 'car', 'Ca_08922_v3' => 'car', 'Ca_08923_v3' => 'car', 'Ca_09119_v3' => 'car', 'Ca_09703_v3' => 'car', 'Ca_09705_v3' => 'car', 'Ca_09835_v3' => 'car', 'Ca_26403_v3' => 'car', 'Ca_30719_v3' => 'car', 'CBR_g17958' => 'cbr', 'CBR_g40516' => 'cbr', 'Cc00_g05350' => 'ccan', 'Cc01_g18690' => 'ccan', 'Cc03_g04830' => 'ccan', 'Cc03_g04850' => 'ccan', 'CDE02G4469' => 'cde', 'CDE06G0883' => 'cde', 'CDE06G1295' => 'cde', 'CDE06G1390' => 'cde', 'CDE07G0584' => 'cde', 'CDE07G1084' => 'cde', 'CDE08G1259' => 'cde', 'Cfa002341' => 'cfa', 'Cfa024337' => 'cfa', 'Ciclev10004749m.g' => 'ccl', 'Ciclev10006127m.g' => 'ccl', 'Ciclev10019720m.g' => 'ccl', 'Ciclev10022652m.g' => 'ccl', 'CiPaw.01G190400' => 'cil', 'CiPaw.01G190500' => 'cil', 'CiPaw.02G116400' => 'cil', 'CiPaw.02G116500' => 'cil', 'CiPaw.04G183000' => 'cil', 'CiPaw.04G183300' => 'cil', 'ClCG05G004610' => 'cla', 'ClCG05G004620' => 'cla', 'ClCG06G006730' => 'cla', 'ClCG06G006740' => 'cla', 'ClCG11G003690' => 'cla', 'COL.COLO4_08276' => 'col', 'COL.COLO4_08277' => 'col', 'COL.COLO4_15787' => 'col', 'COL.COLO4_15789' => 'col', 'Cpa.g.c44815' => 'cpa', 'Cpa.g.sc52.144' => 'cpa', 'Cpa.g.sc58.46' => 'cpa', 'Cpa.g.sc58.47' => 'cpa', 'Cre08.g360900' => 'cre', 'CsaV3_2G013030' => 'csa', 'CsaV3_2G013050' => 'csa', 'CsaV3_2G015620' => 'csa', 'CsaV3_3G012590' => 'csa', 'CsaV3_3G012600' => 'csa', 'CSS0001641' => 'camsi', 'CSS0008310' => 'camsi', 'CSS0013011' => 'camsi', 'CSS0017147' => 'camsi', 'CSS0022970' => 'camsi', 'CSS0025655' => 'camsi', 'CSS0028665' => 'camsi', 'CSS0029117' => 'camsi', 'CSS0032024' => 'camsi', 'CSS0039681' => 'camsi', 'CSS0046516' => 'camsi', 'CSS0050307' => 'camsi', 'DCAR_005871' => 'dca', 'DCAR_007342' => 'dca', 'DCAR_024228' => 'dca', 'DCAR_027277' => 'dca', 'DCAR_030718' => 'dca', 'Dinv20287' => 'din', 'Dinv22461' => 'din', 'Dinv22464' => 'din', 'Dinv29912' => 'din', 'Dinv29913' => 'din', 'Dinv34580' => 'din', 'Dinv34582' => 'din', 'Dinv44632' => 'din', 'Duzib052G0266' => 'dzi', 'Duzib133G0907' => 'dzi', 'Duzib133G1034' => 'dzi', 'Duzib138G0207' => 'dzi', 'Duzib138G0491' => 'dzi', 'Duzib151G0812' => 'dzi', 'Duzib151G1166' => 'dzi', 'Duzib168G0192' => 'dzi', 'Duzib211G0077' => 'dzi', 'Duzib212G0429' => 'dzi', 'Duzib212G0472' => 'dzi', 'ECA233G2617' => 'eca', 'ECA236G4188' => 'eca', 'ECA240G0936' => 'eca', 'ECA240G1129' => 'eca', 'ECA247G0623' => 'eca', 'EL10Ac5g10451' => 'bvu', 'EL10Ac5g10453' => 'bvu', 'EL10Ac5g10894' => 'bvu', 'Eucgr.H00192' => 'egr', 'Eucgr.H00193' => 'egr', 'Eucgr.H00194' => 'egr', 'Eucgr.J01562' => 'egr', 'Eucgr.K03301' => 'egr', 'FAN02G0632' => 'fan', 'FAN05G5378' => 'fan', 'FAN09G3247' => 'fan', 'FAN12G0435' => 'fan', 'FAN12G2426' => 'fan', 'FAN14G1707' => 'fan', 'FAN14G4725' => 'fan', 'FAN15G2071' => 'fan', 'FAN17G3065' => 'fan', 'FAN19G1376' => 'fan', 'FAN20G0354' => 'fan', 'FAN20G2429' => 'fan', 'FAN20G2658' => 'fan', 'FAN24G2343' => 'fan', 'FAN27G2362' => 'fan', 'FAN28G1765' => 'fan', 'FvH4_1g16020' => 'fve', 'FvH4_2g04890' => 'fve', 'FvH4_2g22270' => 'fve', 'FvH4_4g02630' => 'fve', 'FvH4_4g02640' => 'fve', 'FvH4_6g02650' => 'fve', 'Glyma.02G140600' => 'gma', 'Glyma.03G159900' => 'gma', 'Glyma.05G234800' => 'gma', 'Glyma.07G269600' => 'gma', 'Glyma.08G042300' => 'gma', 'Glyma.10G033500' => 'gma', 'Glyma.10G185200' => 'gma', 'Glyma.17G004300' => 'gma', 'Glyma.19G161900' => 'gma', 'Glyma.20G205100' => 'gma', 'Glyma.20G205200' => 'gma', 'Gohir.A01G139101' => 'ghi', 'Gohir.A02G035600' => 'ghi', 'Gohir.A02G117901' => 'ghi', 'Gohir.A07G210100' => 'ghi', 'Gohir.A07G210200' => 'ghi', 'Gohir.A08G061100' => 'ghi', 'Gohir.A09G223000' => 'ghi', 'Gohir.A09G223100' => 'ghi', 'Gohir.A10G113900' => 'ghi', 'Gohir.A10G114000' => 'ghi', 'Gohir.D02G042300' => 'ghi', 'Gohir.D07G216100' => 'ghi', 'Gohir.D07G216200' => 'ghi', 'Gohir.D08G070400' => 'ghi', 'Gohir.D09G225000' => 'ghi', 'Gohir.D09G225100' => 'ghi', 'Gohir.D10G152300' => 'ghi', 'Gohir.D10G153200' => 'ghi', 'Gohir.D11G133701' => 'ghi', 'Gorai.004G074100' => 'gra', 'Gorai.005G046800' => 'gra', 'Gorai.006G246500' => 'gra', 'Gorai.006G246600' => 'gra', 'Gorai.007G142900' => 'gra', 'Gorai.011G171000' => 'gra', 'Gorai.011G171100' => 'gra', 'Gorai.013G104300' => 'gra', 'Gorai.013G104400' => 'gra', 'GSVIVG01000754001' => 'vvi', 'GSVIVG01000756001' => 'vvi', 'GSVIVG01010903001' => 'vvi', 'GSVIVG01017623001' => 'vvi', 'GSVIVG01018113001' => 'vvi', 'GSVIVG01018116001' => 'vvi', 'GSVIVG01018118001' => 'vvi', 'HanXRQChr03g0076211' => 'han', 'HanXRQChr03g0092431' => 'han', 'HanXRQChr03g0092441' => 'han', 'HanXRQChr03g0092591' => 'han', 'HanXRQChr03g0092671' => 'han', 'HanXRQChr03g0092681' => 'han', 'HanXRQChr03g0092691' => 'han', 'HanXRQChr03g0092701' => 'han', 'HanXRQChr03g0092721' => 'han', 'HanXRQChr03g0092731' => 'han', 'HanXRQChr04g0113681' => 'han', 'HanXRQChr10g0281371' => 'han', 'HanXRQChr11g0337141' => 'han', 'HanXRQChr13g0424521' => 'han', 'HanXRQChr13g0424531' => 'han', 'HanXRQChr13g0424541' => 'han', 'HanXRQChr16g0498221' => 'han', 'Haze_04377' => 'cav', 'Haze_11298' => 'cav', 'Haze_24547' => 'cav', 'Haze_24550' => 'cav', 'Haze_26587' => 'cav', 'Hma1.2p1_0650F.1_g195410' => 'hma', 'Hma1.2p1_0893F.1_g233470' => 'hma', 'HPP92_006508' => 'vpl', 'HPP92_024780' => 'vpl', 'Hund02688' => 'sun', 'Hund09380' => 'sun', 'Hund09381' => 'sun', 'Hund09832' => 'sun', 'Hund09833' => 'sun', 'Hund11351' => 'sun', 'Hund11513' => 'sun', 'Lalb_Chr06g0162591' => 'lal', 'Lalb_Chr06g0162601' => 'lal', 'Lalb_Chr06g0169321' => 'lal', 'Lalb_Chr09g0330951' => 'lal', 'Lalb_Chr16g0387631' => 'lal', 'Lalb_Chr21g0306241' => 'lal', 'Lalb_Chr25g0290051' => 'lal', 'Lalb_Chr25g0290061' => 'lal', 'Lalb_Chr25g0290071' => 'lal', 'Lj1g0003876' => 'lja', 'Lj1P1207T36' => 'lonja', 'Lj2C1156G12' => 'lonja', 'Lj3A793G39' => 'lonja', 'Lj3C580G2' => 'lonja', 'Lj3C780G2' => 'lonja', 'Lj3C780T4' => 'lonja', 'Lj3C793G9' => 'lonja', 'Lj4g0012960' => 'lja', 'Lj5g0021252' => 'lja', 'Lj5g0021484' => 'lja', 'Lj5g0024528' => 'lja', 'Lj6A399T12' => 'lonja', 'Lj6A656G65' => 'lonja', 'Lsat_1_v5_gn_3_125500' => 'lsa', 'Lsat_1_v5_gn_3_125540' => 'lsa', 'Lsat_1_v5_gn_5_72701' => 'lsa', 'Lsat_1_v5_gn_8_91560' => 'lsa', 'Lsat_1_v5_gn_9_9640' => 'lsa', 'Manes.01G200600' => 'mes', 'Manes.01G200700' => 'mes', 'Manes.03G168900' => 'mes', 'Manes.03G169000' => 'mes', 'Manes.05G085801' => 'mes', 'Manes.05G086200' => 'mes', 'Manes.15G036700' => 'mes', 'Manes.15G036900' => 'mes', 'Mapoly0004s0172' => 'mpo', 'Mapoly0023s0001' => 'mpo', 'Mapoly0142s0012' => 'mpo', 'MBI01_g32854_MAGBIO' => 'mbi', 'MBI11_g24427_MAGBIO' => 'mbi', 'MBI11_g47319_MAGBIO' => 'mbi', 'MCO01G433' => 'mco', 'MD00G1187800' => 'mdo', 'MD04G1226500' => 'mdo', 'MD05G1203900' => 'mdo', 'MD10G1191100' => 'mdo', 'MD12G1243500' => 'mdo', 'MD13G1207000' => 'mdo', 'MD13G1207100' => 'mdo', 'MD16G1208600' => 'mdo', 'Medtr1g050352' => 'mtr', 'Medtr1g070385' => 'mtr', 'Medtr1g070450' => 'mtr', 'Medtr1g075200' => 'mtr', 'Medtr1g075250' => 'mtr', 'Medtr1g075260' => 'mtr', 'Medtr1g475250' => 'mtr', 'Medtr4g075450' => 'mtr', 'Medtr7g096300' => 'mtr', 'Medtr8g105110' => 'mtr', 'MELO3C006470.2' => 'cme', 'MELO3C006471.2' => 'cme', 'MELO3C020772.2' => 'cme', 'MELO3C026780.2' => 'cme', 'MELO3C026781.2' => 'cme', 'Migut.D00390' => 'egut', 'Migut.G00435' => 'egut', 'Migut.G00436' => 'egut', 'Migut.G00718' => 'egut', 'MSTRG.21891' => 'ama', 'MSTRG.26910' => 'ama', 'MSTRG.4099' => 'ama', 'MSTRG.9925' => 'ama', 'Nitab4.5_0000165g0010' => 'nta', 'Nitab4.5_0000209g0180' => 'nta', 'Nitab4.5_0000244g0440' => 'nta', 'Nitab4.5_0000525g0220' => 'nta', 'Nitab4.5_0001597g0020' => 'nta', 'Nitab4.5_0001878g0040' => 'nta', 'Nitab4.5_0001878g0060' => 'nta', 'Nitab4.5_0002838g0100' => 'nta', 'Nitab4.5_0002838g0120' => 'nta', 'Nitab4.5_0004798g0030' => 'nta', 'Nitab4.5_0005420g0010' => 'nta', 'Nitab4.5_0005507g0010' => 'nta', 'Nitab4.5_0005574g0020' => 'nta', 'Nitab4.5_0005838g0010' => 'nta', 'Nitab4.5_0010580g0020' => 'nta', 'Nn1g02599' => 'nnu', 'Nn1g02608' => 'nnu', 'Nn3g17742' => 'nnu', 'Nn3g19534' => 'nnu', 'Nn3g19535' => 'nnu', 'Oeu008790.1' => 'oeu', 'Oeu008792.1' => 'oeu', 'Oeu032590.1' => 'oeu', 'Oeu035349.1' => 'oeu', 'Oeu049791.1' => 'oeu', 'Os01g0774500' => 'osa', 'Os03g0628800' => 'osa', 'Os03g0798600' => 'osa', 'Os05g0508800' => 'osa', 'Peaxi162Scf00036g02018' => 'pax', 'Peaxi162Scf00578g00032' => 'pax', 'Peaxi162Scf00578g00317' => 'pax', 'Peaxi162Scf00785g00114' => 'pax', 'Peaxi162Scf00813g00119' => 'pax', 'Peaxi162Scf00906g00227' => 'pax', 'PGR004G0875' => 'pgr', 'PGR004G2424' => 'pgr', 'PGR031G1239' => 'pgr', 'PGR031G2474' => 'pgr', 'PGR044G0423' => 'pgr', 'PGSC0003DMG400001128' => 'stu', 'PGSC0003DMG400007336' => 'stu', 'PGSC0003DMG400016318' => 'stu', 'PGSC0003DMG400016319' => 'stu', 'PGSC0003DMG400018074' => 'stu', 'Phvul.001G157700' => 'pvu', 'Phvul.002G148550' => 'pvu', 'Phvul.002G320200' => 'pvu', 'Phvul.003G089200' => 'pvu', 'Phvul.007G126000' => 'pvu', 'Phvul.007G126100' => 'pvu', 'Phvul.007G178000' => 'pvu', 'Phvul.007G178200' => 'pvu', 'Potri.002G043000' => 'ptr', 'Potri.002G043200' => 'ptr', 'Potri.003G123750' => 'ptr', 'Potri.005G055401' => 'ptr', 'Potri.005G219700' => 'ptr', 'Potri.005G220000' => 'ptr', 'Potri.008G161901' => 'ptr', 'Potri.008G162000' => 'ptr', 'Potri.008G162400' => 'ptr', 'Potri.010G076900' => 'ptr', 'Pp3c12_9180' => 'ppa', 'Pp3c13_19770' => 'ppa', 'Pp3c14_22950' => 'ppa', 'Pp3c16_12160' => 'ppa', 'Pp3c27_7820' => 'ppa', 'Pp3c2_3490' => 'ppa', 'Pp3c3_23700' => 'ppa', 'Pp3c3_36520' => 'ppa', 'Pp3c4_15250' => 'ppa', 'PRCOL_00007002' => 'pco', 'Prupe.1G030600' => 'ppe', 'Prupe.1G030700' => 'ppe', 'Prupe.6G345200' => 'ppe', 'Prupe.8G230300' => 'ppe', 'Prupe.8G230500' => 'ppe', 'Psat3g059600' => 'psa', 'Psat5g200920' => 'psa', 'Psat6g056440' => 'psa', 'Psat6g057360' => 'psa', 'Psat6g134120' => 'psa', 'Psat6g134160' => 'psa', 'Psat7g008640' => 'psa', 'Psat7g185240' => 'psa', 'PSO017G1330' => 'pso', 'PSO063G6097' => 'pso', 'PSO170G0835' => 'pso', 'PSO170G2499' => 'pso', 'PSO210G5058' => 'pso', 'PSO210G6154' => 'pso', 'PSO585G0031' => 'pso', 'PSO832G0264' => 'pso', 'PSO832G4288' => 'pso', 'QL03p027355' => 'qlo', 'QL03p027430' => 'qlo', 'QL04p081380' => 'qlo', 'QL06p015642' => 'qlo', 'QL06p015650' => 'qlo', 'QL06p015686' => 'qlo', 'QL12p042927' => 'qlo', 'QL93p1863_0035' => 'qlo', 'RcHm_v2.0_Chr3g0450581' => 'rch', 'RcHm_v2.0_Chr4g0390371' => 'rch', 'RcHm_v2.0_Chr4g0390381' => 'rch', 'RcHm_v2.0_Chr4g0390491' => 'rch', 'RcHm_v2.0_Chr4g0390501' => 'rch', 'RcHm_v2.0_Chr6g0289231' => 'rch', 'Rhsim04G0190400' => 'rsi', 'Rhsim04G0190500' => 'rsi', 'Rhsim04G0190600' => 'rsi', 'Rhsim13G0031400' => 'rsi', 'Rhsim13G0165600' => 'rsi', 'RhsimUnG0114600' => 'rsi', 'RhsimUnG0114700' => 'rsi', 'Sabra02G0034800' => 'sbr', 'Sabra02G0035100' => 'sbr', 'Sabra05G0168600' => 'sbr', 'Sabra05G0168800' => 'sbr', 'Sabra08G0123700' => 'sbr', 'Sabra10G0031900' => 'sbr', 'Sabra13G0039000' => 'sbr', 'SalBow2G0782' => 'sbo', 'SalBow2G1403' => 'sbo', 'SalBow4G0074' => 'sbo', 'SalBow4G2635' => 'sbo', 'SalBow5G3010' => 'sbo', 'Sc05g0000870' => 'sci', 'Sc05g0000890' => 'sci', 'Sc13g0005000' => 'sci', 'Sc13g0005030' => 'sci', 'Sc19g0003790' => 'sci', 'Sc19g0003800' => 'sci', 'Sed0003467' => 'sed', 'Sed0009355' => 'sed', 'Sed0009894' => 'sed', 'Sed0011972' => 'sed', 'Sed0021483' => 'sed', 'Sed0021750' => 'sed', 'Sed0026279' => 'sed', 'SEGI_05312' => 'sgi', 'SEGI_10112' => 'sgi', 'SEGI_15835' => 'sgi', 'SEGI_30386' => 'sgi', 'SEGI_34122' => 'sgi', 'SEGI_35063' => 'sgi', 'SGA_v2.0_scaffold101G29794' => 'sas', 'SGA_v2.0_scaffold1G00573' => 'sas', 'SGA_v2.0_scaffold79G25637' => 'sas', 'SGA_v2.0_scaffold88G27283' => 'sas', 'SGA_v2.0_scaffold88G27285' => 'sas', 'SGA_v2.0_scaffold88G27331' => 'sas', 'SHI09937' => 'shi', 'SMO119G0302' => 'smo', 'SMO137G0231' => 'smo', 'SMO367G1151' => 'smo', 'Solyc02g082000.3' => 'sly', 'Solyc06g031670.3' => 'sly', 'Solyc06g053810.3' => 'sly', 'Solyc07g025457.1' => 'sly', 'Solyc08g059740.1' => 'sly', 'Solyc08g059750.3' => 'sly', 'Solyc09g083370.3' => 'sly', 'Solyc12g038950.3' => 'sly', 'Sopen02g026630' => 'spe', 'Sopen06g018930' => 'spe', 'Sopen06g018940' => 'spe', 'Sopen08g009460' => 'spe', 'Sopen09g032290' => 'spe', 'Sp1g03080' => 'spa', 'Sp1g03090' => 'spa', 'Sp1g05480' => 'spa', 'Sp2g07860' => 'spa', 'Sp2g08430' => 'spa', 'Sp2g08440' => 'spa', 'Sp2g26200' => 'spa', 'Sp4g13170' => 'spa', 'Sp6g33840' => 'spa', 'SpUn1204_0010' => 'spa', 'TAR365G0908' => 'tar', 'TAR381G1270' => 'tar', 'TAR381G1651' => 'tar', 'TAR625G1131' => 'tar', 'TAR633G0962' => 'tar', 'TAR633G1729' => 'tar', 'TAR633G1864' => 'tar', 'TAR636G0221' => 'tar', 'TAR636G0314' => 'tar', 'TAR636G3202' => 'tar', 'THA.LOC104800805' => 'tha', 'THA.LOC104801096' => 'tha', 'THA.LOC104801555' => 'tha', 'THA.LOC104808491' => 'tha', 'THA.LOC104808595' => 'tha', 'THA.LOC104815985' => 'tha', 'THA.LOC104822250' => 'tha', 'THA.LOC104826071' => 'tha', 'Thecc.01G265200' => 'tca', 'Thecc.01G265300' => 'tca', 'Thecc.01G265700' => 'tca', 'Thecc.03G109100' => 'tca', 'Thecc.04G245900' => 'tca', 'Thecc.04G246000' => 'tca', 'Thhalv10003334m.g' => 'esa', 'Thhalv10005508m.g' => 'esa', 'Thhalv10005643m.g' => 'esa', 'Thhalv10007316m.g' => 'esa', 'Thhalv10009006m.g' => 'esa', 'Thhalv10009309m.g' => 'esa', 'Thhalv10014917m.g' => 'esa', 'Thhalv10014919m.g' => 'esa', 'Thhalv10015393m.g' => 'esa', 'Thhalv10016515m.g' => 'esa', 'Thhalv10029242m.g' => 'esa', 'TPR.G16654' => 'tpr', 'TPR.G20589' => 'tpr', 'TPR.G23029' => 'tpr', 'TPR.G27731' => 'tpr', 'TPR.G28889' => 'tpr', 'TPR.G28899' => 'tpr', 'TPR.G30846' => 'tpr', 'TPR.G5452' => 'tpr', 'TPR.G5713' => 'tpr', 'TPR.G9046' => 'tpr', 'TPR.G9061' => 'tpr', 'TWI09G1075' => 'twi', 'TWI12G0806' => 'twi', 'TWI18G0108' => 'twi', 'TWI53G1361' => 'twi', 'TWI73G0185' => 'twi', 'TWI73G0427' => 'twi', 'unitig_37.g12001' => 'ugi', 'unitig_747.g21660' => 'ugi', 'unitig_748.g7232' => 'ugi', 'unitig_748.g7315' => 'ugi', 'unitig_85.g27262' => 'ugi', 'unitig_92.g28220' => 'ugi', 'vmacro02632' => 'vma', 'vmacro08410' => 'vma', 'vmacro08411' => 'vma', 'vmacro15407' => 'vma', 'VMungo0251G3619' => 'vmu', 'VMungo0720G1204' => 'vmu', 'VMungo0720G1918' => 'vmu', 'VMungo0720G2387' => 'vmu', 'VMungo0720G2961' => 'vmu', 'VMungo1215G2154' => 'vmu', 'VMungo1383G2411' => 'vmu', 'Zm00001eb051130' => 'zma', 'Zm00001eb116830' => 'zma', 'Zm00001eb116850' => 'zma', 'Zm00001eb151740' => 'zma', 'Zm00001eb292360' => 'zma', 'Zm00001eb301640' => 'zma' ) $gf_id = 'HOM05D000856' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000856' ) $data_identifier = 'HOM05D000856' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 13, 'ath' => (int) 10, 'atr' => (int) 1, 'acertr' => (int) 8, 'cqu' => (int) 6, 'bca' => (int) 21, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 11, 'car' => (int) 9, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 8, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 5, 'fan' => (int) 16, 'fve' => (int) 6, 'gma' => (int) 11, 'ghi' => (int) 19, 'gra' => (int) 9, 'vvi' => (int) 7, 'han' => (int) 17, 'cav' => (int) 5, 'hma' => (int) 2, 'vpl' => (int) 2, 'sun' => (int) 7, 'lal' => (int) 9, 'lja' => (int) 5, 'lonja' => (int) 9, 'lsa' => (int) 5, 'mes' => (int) 8, 'mpo' => (int) 3, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 10, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 15, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 9, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 9, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 6, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 5, 'spa' => (int) 10, 'tar' => (int) 10, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 11, 'tpr' => (int) 11, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 4, 'vmu' => (int) 7, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb301640' $species_info = array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ) $local_species = 'din' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000856', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p00010' => 'bna', 'A03p04160' => 'bna', 'A03p17160' => 'bna', 'A04p23370' => 'bna', 'A05p14860' => 'bna', 'A08p37020' => 'bna', 'A09p08050' => 'bna', 'A09p66800' => 'bna', 'A09p67940' => 'bna', 'A10p02680' => 'bna', 'A10p05320' => 'bna', 'Aa31LG1G20560' => 'aar', 'Aa31LG1G20610' => 'aar', 'Aa31LG1G7810' => 'aar', 'Aa31LG5G3590' => 'aar', 'Aa31LG5G6140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3819' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4683' => 'aag', 'Actinidia04480' => 'ach', 'Actinidia05466' => 'ach', 'Actinidia08445' => 'ach', 'Actinidia21170' => 'ach', 'Actinidia24812' => 'ach', 'Actinidia24951' => 'ach', 'Actinidia40088' => 'ach', 'Ah.02g111660' => 'amhyb', 'Ah.11g048900' => 'amhyb', 'Ah.11g049910' => 'amhyb', 'AL1G13870' => 'aly', 'AL1G13880' => 'aly', 'AL1G16760' => 'aly', 'AL390U10020' => 'aly', 'AL4G25520' => 'aly', 'AL6G19890' => 'aly', 'AL6G19900' => 'aly', 'AL6G19910' => 'aly', 'AL8G40100' => 'aly', 'Aqoxy2G03562' => 'aox', 'Aqoxy5G00316' => 'aox', 'Aqoxy5G00926' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1628KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1H403S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2FU6SJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.882I6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8YRY2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YN1SN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AF70II' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZA8L1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F916KL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHRD8H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KTZ8QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S22EMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8M29T' => 'arhy', 'AT1G04270' => 'ath', 'AT1G04280' => 'ath', 'AT1G06750' => 'ath', 'AT1G33850' => 'ath', 'AT2G30630' => 'ath', 'AT5G09490' => 'ath', 'AT5G09500' => 'ath', 'AT5G09510' => 'ath', 'AT5G43640' => 'ath', 'AT5G63070' => 'ath', 'ATR0605G315' => 'atr', 'Atru.chr11.175' => 'acertr', 'Atru.chr11.653' => 'acertr', 'Atru.chr3.1616' => 'acertr', 'Atru.chr4.2230' => 'acertr', 'Atru.chr4.2232' => 'acertr', 'Atru.chr5.1598' => 'acertr', 'Atru.chr5.1600' => 'acertr', 'Atru.chr5.2188' => 'acertr', 'AUR62008326' => 'cqu', 'AUR62011922' => 'cqu', 'AUR62011924' => 'cqu', 'AUR62021771' => 'cqu', 'AUR62032237' => 'cqu', 'AUR62032240' => 'cqu', 'BcaB01g05572' => 'bca', 'BcaB02g10337' => 'bca', 'BcaB04g19944' => 'bca', 'BcaB05g21548' => 'bca', 'BcaB05g21549' => 'bca', 'BcaB05g23227' => 'bca', 'BcaB06g26256' => 'bca', 'BcaB06g26257' => 'bca', 'BcaB06g28379' => 'bca', 'BcaC02g11159' => 'bca', 'BcaC03g13258' => 'bca', 'BcaC03g13259' => 'bca', 'BcaC05g24456' => 'bca', 'BcaC05g24457' => 'bca', 'BcaC07g36922' => 'bca', 'BcaC07g36923' => 'bca', 'BcaC07g42050' => 'bca', 'BcaC07g42176' => 'bca', 'BcaC07g42195' => 'bca', 'BcaC07g42196' => 'bca', 'BcaNung06674' => 'bca', 'BolC2t06351H' => 'bol', 'BolC2t06352H' => 'bol', 'BolC3t12993H' => 'bol', 'BolC4t23525H' => 'bol', 'BolC4t27475H' => 'bol', 'BolC5t29025H' => 'bol', 'BolC5t29026H' => 'bol', 'BolC8t46898H' => 'bol', 'BolC8t46899H' => 'bol', 'BolC8t52630H' => 'bol', 'BolC8t52765H' => 'bol', 'BolC9t53824H' => 'bol', 'BraA03t09760Z' => 'bra', 'BraA03t10990Z' => 'bra', 'BraA05t20413Z' => 'bra', 'BraA08t35602Z' => 'bra', 'BraA09t36458Z' => 'bra', 'BraA09t42018Z' => 'bra', 'BraA09t42129Z' => 'bra', 'BraA10t42536Z' => 'bra', 'BraA10t42537Z' => 'bra', 'C01p10690' => 'bna', 'C02p03890' => 'bna', 'C02p03900' => 'bna', 'C03p04620' => 'bna', 'C04p19870' => 'bna', 'C04p59670' => 'bna', 'C05p02460' => 'bna', 'C05p02470' => 'bna', 'C08p00980' => 'bna', 'C08p00990' => 'bna', 'C08p51030' => 'bna', 'C08p52360' => 'bna', 'C09p09120' => 'bna', 'CAN.G19.15' => 'can', 'CAN.G251.10' => 'can', 'CAN.G251.9' => 'can', 'CAN.G398.24' => 'can', 'CAN.G410.32' => 'can', 'CAN.G881.2' => 'can', 'CANSAT01G3025' => 'cansat', 'CANSAT78G1211' => 'cansat', 'CANSAT78G1218' => 'cansat', 'CANSAT78G1521' => 'cansat', 'CANSAT78G1670' => 'cansat', 'CARHR003600' => 'chi', 'CARHR003610' => 'chi', 'CARHR006290' => 'chi', 'CARHR006430' => 'chi', 'CARHR124110' => 'chi', 'CARHR203870' => 'chi', 'CARHR203880' => 'chi', 'CARHR203890' => 'chi', 'CARHR276880' => 'chi', 'Carub.0001s0346' => 'cru', 'Carub.0001s0347' => 'cru', 'Carub.0001s0607' => 'cru', 'Carub.0003s2768' => 'cru', 'Carub.0003s2769' => 'cru', 'Carub.0004s1178' => 'cru', 'Carub.0006s0806' => 'cru', 'Carub.0006s0807' => 'cru', 'Carub.0006s0808' => 'cru', 'Carub.0008s0501' => 'cru', 'Carub.0008s2379' => 'cru', 'Ca_08655_v3' => 'car', 'Ca_08922_v3' => 'car', 'Ca_08923_v3' => 'car', 'Ca_09119_v3' => 'car', 'Ca_09703_v3' => 'car', 'Ca_09705_v3' => 'car', 'Ca_09835_v3' => 'car', 'Ca_26403_v3' => 'car', 'Ca_30719_v3' => 'car', 'CBR_g17958' => 'cbr', 'CBR_g40516' => 'cbr', 'Cc00_g05350' => 'ccan', 'Cc01_g18690' => 'ccan', 'Cc03_g04830' => 'ccan', 'Cc03_g04850' => 'ccan', 'CDE02G4469' => 'cde', 'CDE06G0883' => 'cde', 'CDE06G1295' => 'cde', 'CDE06G1390' => 'cde', 'CDE07G0584' => 'cde', 'CDE07G1084' => 'cde', 'CDE08G1259' => 'cde', 'Cfa002341' => 'cfa', 'Cfa024337' => 'cfa', 'Ciclev10004749m.g' => 'ccl', 'Ciclev10006127m.g' => 'ccl', 'Ciclev10019720m.g' => 'ccl', 'Ciclev10022652m.g' => 'ccl', 'CiPaw.01G190400' => 'cil', 'CiPaw.01G190500' => 'cil', 'CiPaw.02G116400' => 'cil', 'CiPaw.02G116500' => 'cil', 'CiPaw.04G183000' => 'cil', 'CiPaw.04G183300' => 'cil', 'ClCG05G004610' => 'cla', 'ClCG05G004620' => 'cla', 'ClCG06G006730' => 'cla', 'ClCG06G006740' => 'cla', 'ClCG11G003690' => 'cla', 'COL.COLO4_08276' => 'col', 'COL.COLO4_08277' => 'col', 'COL.COLO4_15787' => 'col', 'COL.COLO4_15789' => 'col', 'Cpa.g.c44815' => 'cpa', 'Cpa.g.sc52.144' => 'cpa', 'Cpa.g.sc58.46' => 'cpa', 'Cpa.g.sc58.47' => 'cpa', 'Cre08.g360900' => 'cre', 'CsaV3_2G013030' => 'csa', 'CsaV3_2G013050' => 'csa', 'CsaV3_2G015620' => 'csa', 'CsaV3_3G012590' => 'csa', 'CsaV3_3G012600' => 'csa', 'CSS0001641' => 'camsi', 'CSS0008310' => 'camsi', 'CSS0013011' => 'camsi', 'CSS0017147' => 'camsi', 'CSS0022970' => 'camsi', 'CSS0025655' => 'camsi', 'CSS0028665' => 'camsi', 'CSS0029117' => 'camsi', 'CSS0032024' => 'camsi', 'CSS0039681' => 'camsi', 'CSS0046516' => 'camsi', 'CSS0050307' => 'camsi', 'DCAR_005871' => 'dca', 'DCAR_007342' => 'dca', 'DCAR_024228' => 'dca', 'DCAR_027277' => 'dca', 'DCAR_030718' => 'dca', 'Dinv20287' => 'din', 'Dinv22461' => 'din', 'Dinv22464' => 'din', 'Dinv29912' => 'din', 'Dinv29913' => 'din', 'Dinv34580' => 'din', 'Dinv34582' => 'din', 'Dinv44632' => 'din', 'Duzib052G0266' => 'dzi', 'Duzib133G0907' => 'dzi', 'Duzib133G1034' => 'dzi', 'Duzib138G0207' => 'dzi', 'Duzib138G0491' => 'dzi', 'Duzib151G0812' => 'dzi', 'Duzib151G1166' => 'dzi', 'Duzib168G0192' => 'dzi', 'Duzib211G0077' => 'dzi', 'Duzib212G0429' => 'dzi', 'Duzib212G0472' => 'dzi', 'ECA233G2617' => 'eca', 'ECA236G4188' => 'eca', 'ECA240G0936' => 'eca', 'ECA240G1129' => 'eca', 'ECA247G0623' => 'eca', 'EL10Ac5g10451' => 'bvu', 'EL10Ac5g10453' => 'bvu', 'EL10Ac5g10894' => 'bvu', 'Eucgr.H00192' => 'egr', 'Eucgr.H00193' => 'egr', 'Eucgr.H00194' => 'egr', 'Eucgr.J01562' => 'egr', 'Eucgr.K03301' => 'egr', 'FAN02G0632' => 'fan', 'FAN05G5378' => 'fan', 'FAN09G3247' => 'fan', 'FAN12G0435' => 'fan', 'FAN12G2426' => 'fan', 'FAN14G1707' => 'fan', 'FAN14G4725' => 'fan', 'FAN15G2071' => 'fan', 'FAN17G3065' => 'fan', 'FAN19G1376' => 'fan', 'FAN20G0354' => 'fan', 'FAN20G2429' => 'fan', 'FAN20G2658' => 'fan', 'FAN24G2343' => 'fan', 'FAN27G2362' => 'fan', 'FAN28G1765' => 'fan', 'FvH4_1g16020' => 'fve', 'FvH4_2g04890' => 'fve', 'FvH4_2g22270' => 'fve', 'FvH4_4g02630' => 'fve', 'FvH4_4g02640' => 'fve', 'FvH4_6g02650' => 'fve', 'Glyma.02G140600' => 'gma', 'Glyma.03G159900' => 'gma', 'Glyma.05G234800' => 'gma', 'Glyma.07G269600' => 'gma', 'Glyma.08G042300' => 'gma', 'Glyma.10G033500' => 'gma', 'Glyma.10G185200' => 'gma', 'Glyma.17G004300' => 'gma', 'Glyma.19G161900' => 'gma', 'Glyma.20G205100' => 'gma', 'Glyma.20G205200' => 'gma', 'Gohir.A01G139101' => 'ghi', 'Gohir.A02G035600' => 'ghi', 'Gohir.A02G117901' => 'ghi', 'Gohir.A07G210100' => 'ghi', 'Gohir.A07G210200' => 'ghi', 'Gohir.A08G061100' => 'ghi', 'Gohir.A09G223000' => 'ghi', 'Gohir.A09G223100' => 'ghi', 'Gohir.A10G113900' => 'ghi', 'Gohir.A10G114000' => 'ghi', 'Gohir.D02G042300' => 'ghi', 'Gohir.D07G216100' => 'ghi', 'Gohir.D07G216200' => 'ghi', 'Gohir.D08G070400' => 'ghi', 'Gohir.D09G225000' => 'ghi', 'Gohir.D09G225100' => 'ghi', 'Gohir.D10G152300' => 'ghi', 'Gohir.D10G153200' => 'ghi', 'Gohir.D11G133701' => 'ghi', 'Gorai.004G074100' => 'gra', 'Gorai.005G046800' => 'gra', 'Gorai.006G246500' => 'gra', 'Gorai.006G246600' => 'gra', 'Gorai.007G142900' => 'gra', 'Gorai.011G171000' => 'gra', 'Gorai.011G171100' => 'gra', 'Gorai.013G104300' => 'gra', 'Gorai.013G104400' => 'gra', 'GSVIVG01000754001' => 'vvi', 'GSVIVG01000756001' => 'vvi', 'GSVIVG01010903001' => 'vvi', 'GSVIVG01017623001' => 'vvi', 'GSVIVG01018113001' => 'vvi', 'GSVIVG01018116001' => 'vvi', 'GSVIVG01018118001' => 'vvi', 'HanXRQChr03g0076211' => 'han', 'HanXRQChr03g0092431' => 'han', 'HanXRQChr03g0092441' => 'han', 'HanXRQChr03g0092591' => 'han', 'HanXRQChr03g0092671' => 'han', 'HanXRQChr03g0092681' => 'han', 'HanXRQChr03g0092691' => 'han', 'HanXRQChr03g0092701' => 'han', 'HanXRQChr03g0092721' => 'han', 'HanXRQChr03g0092731' => 'han', 'HanXRQChr04g0113681' => 'han', 'HanXRQChr10g0281371' => 'han', 'HanXRQChr11g0337141' => 'han', 'HanXRQChr13g0424521' => 'han', 'HanXRQChr13g0424531' => 'han', 'HanXRQChr13g0424541' => 'han', 'HanXRQChr16g0498221' => 'han', 'Haze_04377' => 'cav', 'Haze_11298' => 'cav', 'Haze_24547' => 'cav', 'Haze_24550' => 'cav', 'Haze_26587' => 'cav', 'Hma1.2p1_0650F.1_g195410' => 'hma', 'Hma1.2p1_0893F.1_g233470' => 'hma', 'HPP92_006508' => 'vpl', 'HPP92_024780' => 'vpl', 'Hund02688' => 'sun', 'Hund09380' => 'sun', 'Hund09381' => 'sun', 'Hund09832' => 'sun', 'Hund09833' => 'sun', 'Hund11351' => 'sun', 'Hund11513' => 'sun', 'Lalb_Chr06g0162591' => 'lal', 'Lalb_Chr06g0162601' => 'lal', 'Lalb_Chr06g0169321' => 'lal', 'Lalb_Chr09g0330951' => 'lal', 'Lalb_Chr16g0387631' => 'lal', 'Lalb_Chr21g0306241' => 'lal', 'Lalb_Chr25g0290051' => 'lal', 'Lalb_Chr25g0290061' => 'lal', 'Lalb_Chr25g0290071' => 'lal', 'Lj1g0003876' => 'lja', 'Lj1P1207T36' => 'lonja', 'Lj2C1156G12' => 'lonja', 'Lj3A793G39' => 'lonja', 'Lj3C580G2' => 'lonja', 'Lj3C780G2' => 'lonja', 'Lj3C780T4' => 'lonja', 'Lj3C793G9' => 'lonja', 'Lj4g0012960' => 'lja', 'Lj5g0021252' => 'lja', 'Lj5g0021484' => 'lja', 'Lj5g0024528' => 'lja', 'Lj6A399T12' => 'lonja', 'Lj6A656G65' => 'lonja', 'Lsat_1_v5_gn_3_125500' => 'lsa', 'Lsat_1_v5_gn_3_125540' => 'lsa', 'Lsat_1_v5_gn_5_72701' => 'lsa', 'Lsat_1_v5_gn_8_91560' => 'lsa', 'Lsat_1_v5_gn_9_9640' => 'lsa', 'Manes.01G200600' => 'mes', 'Manes.01G200700' => 'mes', 'Manes.03G168900' => 'mes', 'Manes.03G169000' => 'mes', 'Manes.05G085801' => 'mes', 'Manes.05G086200' => 'mes', 'Manes.15G036700' => 'mes', 'Manes.15G036900' => 'mes', 'Mapoly0004s0172' => 'mpo', 'Mapoly0023s0001' => 'mpo', 'Mapoly0142s0012' => 'mpo', 'MBI01_g32854_MAGBIO' => 'mbi', 'MBI11_g24427_MAGBIO' => 'mbi', 'MBI11_g47319_MAGBIO' => 'mbi', 'MCO01G433' => 'mco', 'MD00G1187800' => 'mdo', 'MD04G1226500' => 'mdo', 'MD05G1203900' => 'mdo', 'MD10G1191100' => 'mdo', 'MD12G1243500' => 'mdo', 'MD13G1207000' => 'mdo', 'MD13G1207100' => 'mdo', 'MD16G1208600' => 'mdo', 'Medtr1g050352' => 'mtr', 'Medtr1g070385' => 'mtr', 'Medtr1g070450' => 'mtr', 'Medtr1g075200' => 'mtr', 'Medtr1g075250' => 'mtr', 'Medtr1g075260' => 'mtr', 'Medtr1g475250' => 'mtr', 'Medtr4g075450' => 'mtr', 'Medtr7g096300' => 'mtr', 'Medtr8g105110' => 'mtr', 'MELO3C006470.2' => 'cme', 'MELO3C006471.2' => 'cme', 'MELO3C020772.2' => 'cme', 'MELO3C026780.2' => 'cme', 'MELO3C026781.2' => 'cme', 'Migut.D00390' => 'egut', 'Migut.G00435' => 'egut', 'Migut.G00436' => 'egut', 'Migut.G00718' => 'egut', 'MSTRG.21891' => 'ama', 'MSTRG.26910' => 'ama', 'MSTRG.4099' => 'ama', 'MSTRG.9925' => 'ama', 'Nitab4.5_0000165g0010' => 'nta', 'Nitab4.5_0000209g0180' => 'nta', 'Nitab4.5_0000244g0440' => 'nta', 'Nitab4.5_0000525g0220' => 'nta', 'Nitab4.5_0001597g0020' => 'nta', 'Nitab4.5_0001878g0040' => 'nta', 'Nitab4.5_0001878g0060' => 'nta', 'Nitab4.5_0002838g0100' => 'nta', 'Nitab4.5_0002838g0120' => 'nta', 'Nitab4.5_0004798g0030' => 'nta', 'Nitab4.5_0005420g0010' => 'nta', 'Nitab4.5_0005507g0010' => 'nta', 'Nitab4.5_0005574g0020' => 'nta', 'Nitab4.5_0005838g0010' => 'nta', 'Nitab4.5_0010580g0020' => 'nta', 'Nn1g02599' => 'nnu', 'Nn1g02608' => 'nnu', 'Nn3g17742' => 'nnu', 'Nn3g19534' => 'nnu', 'Nn3g19535' => 'nnu', 'Oeu008790.1' => 'oeu', 'Oeu008792.1' => 'oeu', 'Oeu032590.1' => 'oeu', 'Oeu035349.1' => 'oeu', 'Oeu049791.1' => 'oeu', 'Os01g0774500' => 'osa', 'Os03g0628800' => 'osa', 'Os03g0798600' => 'osa', 'Os05g0508800' => 'osa', 'Peaxi162Scf00036g02018' => 'pax', 'Peaxi162Scf00578g00032' => 'pax', 'Peaxi162Scf00578g00317' => 'pax', 'Peaxi162Scf00785g00114' => 'pax', 'Peaxi162Scf00813g00119' => 'pax', 'Peaxi162Scf00906g00227' => 'pax', 'PGR004G0875' => 'pgr', 'PGR004G2424' => 'pgr', 'PGR031G1239' => 'pgr', 'PGR031G2474' => 'pgr', 'PGR044G0423' => 'pgr', 'PGSC0003DMG400001128' => 'stu', 'PGSC0003DMG400007336' => 'stu', 'PGSC0003DMG400016318' => 'stu', 'PGSC0003DMG400016319' => 'stu', 'PGSC0003DMG400018074' => 'stu', 'Phvul.001G157700' => 'pvu', 'Phvul.002G148550' => 'pvu', 'Phvul.002G320200' => 'pvu', 'Phvul.003G089200' => 'pvu', 'Phvul.007G126000' => 'pvu', 'Phvul.007G126100' => 'pvu', 'Phvul.007G178000' => 'pvu', 'Phvul.007G178200' => 'pvu', 'Potri.002G043000' => 'ptr', 'Potri.002G043200' => 'ptr', 'Potri.003G123750' => 'ptr', 'Potri.005G055401' => 'ptr', 'Potri.005G219700' => 'ptr', 'Potri.005G220000' => 'ptr', 'Potri.008G161901' => 'ptr', 'Potri.008G162000' => 'ptr', 'Potri.008G162400' => 'ptr', 'Potri.010G076900' => 'ptr', 'Pp3c12_9180' => 'ppa', 'Pp3c13_19770' => 'ppa', 'Pp3c14_22950' => 'ppa', 'Pp3c16_12160' => 'ppa', 'Pp3c27_7820' => 'ppa', 'Pp3c2_3490' => 'ppa', 'Pp3c3_23700' => 'ppa', 'Pp3c3_36520' => 'ppa', 'Pp3c4_15250' => 'ppa', 'PRCOL_00007002' => 'pco', 'Prupe.1G030600' => 'ppe', 'Prupe.1G030700' => 'ppe', 'Prupe.6G345200' => 'ppe', 'Prupe.8G230300' => 'ppe', 'Prupe.8G230500' => 'ppe', 'Psat3g059600' => 'psa', 'Psat5g200920' => 'psa', 'Psat6g056440' => 'psa', 'Psat6g057360' => 'psa', 'Psat6g134120' => 'psa', 'Psat6g134160' => 'psa', 'Psat7g008640' => 'psa', 'Psat7g185240' => 'psa', 'PSO017G1330' => 'pso', 'PSO063G6097' => 'pso', 'PSO170G0835' => 'pso', 'PSO170G2499' => 'pso', 'PSO210G5058' => 'pso', 'PSO210G6154' => 'pso', 'PSO585G0031' => 'pso', 'PSO832G0264' => 'pso', 'PSO832G4288' => 'pso', 'QL03p027355' => 'qlo', 'QL03p027430' => 'qlo', 'QL04p081380' => 'qlo', 'QL06p015642' => 'qlo', 'QL06p015650' => 'qlo', 'QL06p015686' => 'qlo', 'QL12p042927' => 'qlo', 'QL93p1863_0035' => 'qlo', 'RcHm_v2.0_Chr3g0450581' => 'rch', 'RcHm_v2.0_Chr4g0390371' => 'rch', 'RcHm_v2.0_Chr4g0390381' => 'rch', 'RcHm_v2.0_Chr4g0390491' => 'rch', 'RcHm_v2.0_Chr4g0390501' => 'rch', 'RcHm_v2.0_Chr6g0289231' => 'rch', 'Rhsim04G0190400' => 'rsi', 'Rhsim04G0190500' => 'rsi', 'Rhsim04G0190600' => 'rsi', 'Rhsim13G0031400' => 'rsi', 'Rhsim13G0165600' => 'rsi', 'RhsimUnG0114600' => 'rsi', 'RhsimUnG0114700' => 'rsi', 'Sabra02G0034800' => 'sbr', 'Sabra02G0035100' => 'sbr', 'Sabra05G0168600' => 'sbr', 'Sabra05G0168800' => 'sbr', 'Sabra08G0123700' => 'sbr', 'Sabra10G0031900' => 'sbr', 'Sabra13G0039000' => 'sbr', 'SalBow2G0782' => 'sbo', 'SalBow2G1403' => 'sbo', 'SalBow4G0074' => 'sbo', 'SalBow4G2635' => 'sbo', 'SalBow5G3010' => 'sbo', 'Sc05g0000870' => 'sci', 'Sc05g0000890' => 'sci', 'Sc13g0005000' => 'sci', 'Sc13g0005030' => 'sci', 'Sc19g0003790' => 'sci', 'Sc19g0003800' => 'sci', 'Sed0003467' => 'sed', 'Sed0009355' => 'sed', 'Sed0009894' => 'sed', 'Sed0011972' => 'sed', 'Sed0021483' => 'sed', 'Sed0021750' => 'sed', 'Sed0026279' => 'sed', 'SEGI_05312' => 'sgi', 'SEGI_10112' => 'sgi', 'SEGI_15835' => 'sgi', 'SEGI_30386' => 'sgi', 'SEGI_34122' => 'sgi', 'SEGI_35063' => 'sgi', 'SGA_v2.0_scaffold101G29794' => 'sas', 'SGA_v2.0_scaffold1G00573' => 'sas', 'SGA_v2.0_scaffold79G25637' => 'sas', 'SGA_v2.0_scaffold88G27283' => 'sas', 'SGA_v2.0_scaffold88G27285' => 'sas', 'SGA_v2.0_scaffold88G27331' => 'sas', 'SHI09937' => 'shi', 'SMO119G0302' => 'smo', 'SMO137G0231' => 'smo', 'SMO367G1151' => 'smo', 'Solyc02g082000.3' => 'sly', 'Solyc06g031670.3' => 'sly', 'Solyc06g053810.3' => 'sly', 'Solyc07g025457.1' => 'sly', 'Solyc08g059740.1' => 'sly', 'Solyc08g059750.3' => 'sly', 'Solyc09g083370.3' => 'sly', 'Solyc12g038950.3' => 'sly', 'Sopen02g026630' => 'spe', 'Sopen06g018930' => 'spe', 'Sopen06g018940' => 'spe', 'Sopen08g009460' => 'spe', 'Sopen09g032290' => 'spe', 'Sp1g03080' => 'spa', 'Sp1g03090' => 'spa', 'Sp1g05480' => 'spa', 'Sp2g07860' => 'spa', 'Sp2g08430' => 'spa', 'Sp2g08440' => 'spa', 'Sp2g26200' => 'spa', 'Sp4g13170' => 'spa', 'Sp6g33840' => 'spa', 'SpUn1204_0010' => 'spa', 'TAR365G0908' => 'tar', 'TAR381G1270' => 'tar', 'TAR381G1651' => 'tar', 'TAR625G1131' => 'tar', 'TAR633G0962' => 'tar', 'TAR633G1729' => 'tar', 'TAR633G1864' => 'tar', 'TAR636G0221' => 'tar', 'TAR636G0314' => 'tar', 'TAR636G3202' => 'tar', 'THA.LOC104800805' => 'tha', 'THA.LOC104801096' => 'tha', 'THA.LOC104801555' => 'tha', 'THA.LOC104808491' => 'tha', 'THA.LOC104808595' => 'tha', 'THA.LOC104815985' => 'tha', 'THA.LOC104822250' => 'tha', 'THA.LOC104826071' => 'tha', 'Thecc.01G265200' => 'tca', 'Thecc.01G265300' => 'tca', 'Thecc.01G265700' => 'tca', 'Thecc.03G109100' => 'tca', 'Thecc.04G245900' => 'tca', 'Thecc.04G246000' => 'tca', 'Thhalv10003334m.g' => 'esa', 'Thhalv10005508m.g' => 'esa', 'Thhalv10005643m.g' => 'esa', 'Thhalv10007316m.g' => 'esa', 'Thhalv10009006m.g' => 'esa', 'Thhalv10009309m.g' => 'esa', 'Thhalv10014917m.g' => 'esa', 'Thhalv10014919m.g' => 'esa', 'Thhalv10015393m.g' => 'esa', 'Thhalv10016515m.g' => 'esa', 'Thhalv10029242m.g' => 'esa', 'TPR.G16654' => 'tpr', 'TPR.G20589' => 'tpr', 'TPR.G23029' => 'tpr', 'TPR.G27731' => 'tpr', 'TPR.G28889' => 'tpr', 'TPR.G28899' => 'tpr', 'TPR.G30846' => 'tpr', 'TPR.G5452' => 'tpr', 'TPR.G5713' => 'tpr', 'TPR.G9046' => 'tpr', 'TPR.G9061' => 'tpr', 'TWI09G1075' => 'twi', 'TWI12G0806' => 'twi', 'TWI18G0108' => 'twi', 'TWI53G1361' => 'twi', 'TWI73G0185' => 'twi', 'TWI73G0427' => 'twi', 'unitig_37.g12001' => 'ugi', 'unitig_747.g21660' => 'ugi', 'unitig_748.g7232' => 'ugi', 'unitig_748.g7315' => 'ugi', 'unitig_85.g27262' => 'ugi', 'unitig_92.g28220' => 'ugi', 'vmacro02632' => 'vma', 'vmacro08410' => 'vma', 'vmacro08411' => 'vma', 'vmacro15407' => 'vma', 'VMungo0251G3619' => 'vmu', 'VMungo0720G1204' => 'vmu', 'VMungo0720G1918' => 'vmu', 'VMungo0720G2387' => 'vmu', 'VMungo0720G2961' => 'vmu', 'VMungo1215G2154' => 'vmu', 'VMungo1383G2411' => 'vmu', 'Zm00001eb051130' => 'zma', 'Zm00001eb116830' => 'zma', 'Zm00001eb116850' => 'zma', 'Zm00001eb151740' => 'zma', 'Zm00001eb292360' => 'zma', 'Zm00001eb301640' => 'zma' ), 'gf_id' => 'HOM05D000856', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000856' ), 'data_identifier' => 'HOM05D000856', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000856', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p00010' => 'bna', 'A03p04160' => 'bna', 'A03p17160' => 'bna', 'A04p23370' => 'bna', 'A05p14860' => 'bna', 'A08p37020' => 'bna', 'A09p08050' => 'bna', 'A09p66800' => 'bna', 'A09p67940' => 'bna', 'A10p02680' => 'bna', 'A10p05320' => 'bna', 'Aa31LG1G20560' => 'aar', 'Aa31LG1G20610' => 'aar', 'Aa31LG1G7810' => 'aar', 'Aa31LG5G3590' => 'aar', 'Aa31LG5G6140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3819' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4683' => 'aag', 'Actinidia04480' => 'ach', 'Actinidia05466' => 'ach', 'Actinidia08445' => 'ach', 'Actinidia21170' => 'ach', 'Actinidia24812' => 'ach', 'Actinidia24951' => 'ach', 'Actinidia40088' => 'ach', 'Ah.02g111660' => 'amhyb', 'Ah.11g048900' => 'amhyb', 'Ah.11g049910' => 'amhyb', 'AL1G13870' => 'aly', 'AL1G13880' => 'aly', 'AL1G16760' => 'aly', 'AL390U10020' => 'aly', 'AL4G25520' => 'aly', 'AL6G19890' => 'aly', 'AL6G19900' => 'aly', 'AL6G19910' => 'aly', 'AL8G40100' => 'aly', 'Aqoxy2G03562' => 'aox', 'Aqoxy5G00316' => 'aox', 'Aqoxy5G00926' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1628KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1H403S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2FU6SJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.882I6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8YRY2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YN1SN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AF70II' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZA8L1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F916KL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHRD8H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KTZ8QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S22EMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8M29T' => 'arhy', 'AT1G04270' => 'ath', 'AT1G04280' => 'ath', 'AT1G06750' => 'ath', 'AT1G33850' => 'ath', 'AT2G30630' => 'ath', 'AT5G09490' => 'ath', 'AT5G09500' => 'ath', 'AT5G09510' => 'ath', 'AT5G43640' => 'ath', 'AT5G63070' => 'ath', 'ATR0605G315' => 'atr', 'Atru.chr11.175' => 'acertr', 'Atru.chr11.653' => 'acertr', 'Atru.chr3.1616' => 'acertr', 'Atru.chr4.2230' => 'acertr', 'Atru.chr4.2232' => 'acertr', 'Atru.chr5.1598' => 'acertr', 'Atru.chr5.1600' => 'acertr', 'Atru.chr5.2188' => 'acertr', 'AUR62008326' => 'cqu', 'AUR62011922' => 'cqu', 'AUR62011924' => 'cqu', 'AUR62021771' => 'cqu', 'AUR62032237' => 'cqu', 'AUR62032240' => 'cqu', 'BcaB01g05572' => 'bca', 'BcaB02g10337' => 'bca', 'BcaB04g19944' => 'bca', 'BcaB05g21548' => 'bca', 'BcaB05g21549' => 'bca', 'BcaB05g23227' => 'bca', 'BcaB06g26256' => 'bca', 'BcaB06g26257' => 'bca', 'BcaB06g28379' => 'bca', 'BcaC02g11159' => 'bca', 'BcaC03g13258' => 'bca', 'BcaC03g13259' => 'bca', 'BcaC05g24456' => 'bca', 'BcaC05g24457' => 'bca', 'BcaC07g36922' => 'bca', 'BcaC07g36923' => 'bca', 'BcaC07g42050' => 'bca', 'BcaC07g42176' => 'bca', 'BcaC07g42195' => 'bca', 'BcaC07g42196' => 'bca', 'BcaNung06674' => 'bca', 'BolC2t06351H' => 'bol', 'BolC2t06352H' => 'bol', 'BolC3t12993H' => 'bol', 'BolC4t23525H' => 'bol', 'BolC4t27475H' => 'bol', 'BolC5t29025H' => 'bol', 'BolC5t29026H' => 'bol', 'BolC8t46898H' => 'bol', 'BolC8t46899H' => 'bol', 'BolC8t52630H' => 'bol', 'BolC8t52765H' => 'bol', 'BolC9t53824H' => 'bol', 'BraA03t09760Z' => 'bra', 'BraA03t10990Z' => 'bra', 'BraA05t20413Z' => 'bra', 'BraA08t35602Z' => 'bra', 'BraA09t36458Z' => 'bra', 'BraA09t42018Z' => 'bra', 'BraA09t42129Z' => 'bra', 'BraA10t42536Z' => 'bra', 'BraA10t42537Z' => 'bra', 'C01p10690' => 'bna', 'C02p03890' => 'bna', 'C02p03900' => 'bna', 'C03p04620' => 'bna', 'C04p19870' => 'bna', 'C04p59670' => 'bna', 'C05p02460' => 'bna', 'C05p02470' => 'bna', 'C08p00980' => 'bna', 'C08p00990' => 'bna', 'C08p51030' => 'bna', 'C08p52360' => 'bna', 'C09p09120' => 'bna', 'CAN.G19.15' => 'can', 'CAN.G251.10' => 'can', 'CAN.G251.9' => 'can', 'CAN.G398.24' => 'can', 'CAN.G410.32' => 'can', 'CAN.G881.2' => 'can', 'CANSAT01G3025' => 'cansat', 'CANSAT78G1211' => 'cansat', 'CANSAT78G1218' => 'cansat', 'CANSAT78G1521' => 'cansat', 'CANSAT78G1670' => 'cansat', 'CARHR003600' => 'chi', 'CARHR003610' => 'chi', 'CARHR006290' => 'chi', 'CARHR006430' => 'chi', 'CARHR124110' => 'chi', 'CARHR203870' => 'chi', 'CARHR203880' => 'chi', 'CARHR203890' => 'chi', 'CARHR276880' => 'chi', 'Carub.0001s0346' => 'cru', 'Carub.0001s0347' => 'cru', 'Carub.0001s0607' => 'cru', 'Carub.0003s2768' => 'cru', 'Carub.0003s2769' => 'cru', 'Carub.0004s1178' => 'cru', 'Carub.0006s0806' => 'cru', 'Carub.0006s0807' => 'cru', 'Carub.0006s0808' => 'cru', 'Carub.0008s0501' => 'cru', 'Carub.0008s2379' => 'cru', 'Ca_08655_v3' => 'car', 'Ca_08922_v3' => 'car', 'Ca_08923_v3' => 'car', 'Ca_09119_v3' => 'car', 'Ca_09703_v3' => 'car', 'Ca_09705_v3' => 'car', 'Ca_09835_v3' => 'car', 'Ca_26403_v3' => 'car', 'Ca_30719_v3' => 'car', 'CBR_g17958' => 'cbr', 'CBR_g40516' => 'cbr', 'Cc00_g05350' => 'ccan', 'Cc01_g18690' => 'ccan', 'Cc03_g04830' => 'ccan', 'Cc03_g04850' => 'ccan', 'CDE02G4469' => 'cde', 'CDE06G0883' => 'cde', 'CDE06G1295' => 'cde', 'CDE06G1390' => 'cde', 'CDE07G0584' => 'cde', 'CDE07G1084' => 'cde', 'CDE08G1259' => 'cde', 'Cfa002341' => 'cfa', 'Cfa024337' => 'cfa', 'Ciclev10004749m.g' => 'ccl', 'Ciclev10006127m.g' => 'ccl', 'Ciclev10019720m.g' => 'ccl', 'Ciclev10022652m.g' => 'ccl', 'CiPaw.01G190400' => 'cil', 'CiPaw.01G190500' => 'cil', 'CiPaw.02G116400' => 'cil', 'CiPaw.02G116500' => 'cil', 'CiPaw.04G183000' => 'cil', 'CiPaw.04G183300' => 'cil', 'ClCG05G004610' => 'cla', 'ClCG05G004620' => 'cla', 'ClCG06G006730' => 'cla', 'ClCG06G006740' => 'cla', 'ClCG11G003690' => 'cla', 'COL.COLO4_08276' => 'col', 'COL.COLO4_08277' => 'col', 'COL.COLO4_15787' => 'col', 'COL.COLO4_15789' => 'col', 'Cpa.g.c44815' => 'cpa', 'Cpa.g.sc52.144' => 'cpa', 'Cpa.g.sc58.46' => 'cpa', 'Cpa.g.sc58.47' => 'cpa', 'Cre08.g360900' => 'cre', 'CsaV3_2G013030' => 'csa', 'CsaV3_2G013050' => 'csa', 'CsaV3_2G015620' => 'csa', 'CsaV3_3G012590' => 'csa', 'CsaV3_3G012600' => 'csa', 'CSS0001641' => 'camsi', 'CSS0008310' => 'camsi', 'CSS0013011' => 'camsi', 'CSS0017147' => 'camsi', 'CSS0022970' => 'camsi', 'CSS0025655' => 'camsi', 'CSS0028665' => 'camsi', 'CSS0029117' => 'camsi', 'CSS0032024' => 'camsi', 'CSS0039681' => 'camsi', 'CSS0046516' => 'camsi', 'CSS0050307' => 'camsi', 'DCAR_005871' => 'dca', 'DCAR_007342' => 'dca', 'DCAR_024228' => 'dca', 'DCAR_027277' => 'dca', 'DCAR_030718' => 'dca', 'Dinv20287' => 'din', 'Dinv22461' => 'din', 'Dinv22464' => 'din', 'Dinv29912' => 'din', 'Dinv29913' => 'din', 'Dinv34580' => 'din', 'Dinv34582' => 'din', 'Dinv44632' => 'din', 'Duzib052G0266' => 'dzi', 'Duzib133G0907' => 'dzi', 'Duzib133G1034' => 'dzi', 'Duzib138G0207' => 'dzi', 'Duzib138G0491' => 'dzi', 'Duzib151G0812' => 'dzi', 'Duzib151G1166' => 'dzi', 'Duzib168G0192' => 'dzi', 'Duzib211G0077' => 'dzi', 'Duzib212G0429' => 'dzi', 'Duzib212G0472' => 'dzi', 'ECA233G2617' => 'eca', 'ECA236G4188' => 'eca', 'ECA240G0936' => 'eca', 'ECA240G1129' => 'eca', 'ECA247G0623' => 'eca', 'EL10Ac5g10451' => 'bvu', 'EL10Ac5g10453' => 'bvu', 'EL10Ac5g10894' => 'bvu', 'Eucgr.H00192' => 'egr', 'Eucgr.H00193' => 'egr', 'Eucgr.H00194' => 'egr', 'Eucgr.J01562' => 'egr', 'Eucgr.K03301' => 'egr', 'FAN02G0632' => 'fan', 'FAN05G5378' => 'fan', 'FAN09G3247' => 'fan', 'FAN12G0435' => 'fan', 'FAN12G2426' => 'fan', 'FAN14G1707' => 'fan', 'FAN14G4725' => 'fan', 'FAN15G2071' => 'fan', 'FAN17G3065' => 'fan', 'FAN19G1376' => 'fan', 'FAN20G0354' => 'fan', 'FAN20G2429' => 'fan', 'FAN20G2658' => 'fan', 'FAN24G2343' => 'fan', 'FAN27G2362' => 'fan', 'FAN28G1765' => 'fan', 'FvH4_1g16020' => 'fve', 'FvH4_2g04890' => 'fve', 'FvH4_2g22270' => 'fve', 'FvH4_4g02630' => 'fve', 'FvH4_4g02640' => 'fve', 'FvH4_6g02650' => 'fve', 'Glyma.02G140600' => 'gma', 'Glyma.03G159900' => 'gma', 'Glyma.05G234800' => 'gma', 'Glyma.07G269600' => 'gma', 'Glyma.08G042300' => 'gma', 'Glyma.10G033500' => 'gma', 'Glyma.10G185200' => 'gma', 'Glyma.17G004300' => 'gma', 'Glyma.19G161900' => 'gma', 'Glyma.20G205100' => 'gma', 'Glyma.20G205200' => 'gma', 'Gohir.A01G139101' => 'ghi', 'Gohir.A02G035600' => 'ghi', 'Gohir.A02G117901' => 'ghi', 'Gohir.A07G210100' => 'ghi', 'Gohir.A07G210200' => 'ghi', 'Gohir.A08G061100' => 'ghi', 'Gohir.A09G223000' => 'ghi', 'Gohir.A09G223100' => 'ghi', 'Gohir.A10G113900' => 'ghi', 'Gohir.A10G114000' => 'ghi', 'Gohir.D02G042300' => 'ghi', 'Gohir.D07G216100' => 'ghi', 'Gohir.D07G216200' => 'ghi', 'Gohir.D08G070400' => 'ghi', 'Gohir.D09G225000' => 'ghi', 'Gohir.D09G225100' => 'ghi', 'Gohir.D10G152300' => 'ghi', 'Gohir.D10G153200' => 'ghi', 'Gohir.D11G133701' => 'ghi', 'Gorai.004G074100' => 'gra', 'Gorai.005G046800' => 'gra', 'Gorai.006G246500' => 'gra', 'Gorai.006G246600' => 'gra', 'Gorai.007G142900' => 'gra', 'Gorai.011G171000' => 'gra', 'Gorai.011G171100' => 'gra', 'Gorai.013G104300' => 'gra', 'Gorai.013G104400' => 'gra', 'GSVIVG01000754001' => 'vvi', 'GSVIVG01000756001' => 'vvi', 'GSVIVG01010903001' => 'vvi', 'GSVIVG01017623001' => 'vvi', 'GSVIVG01018113001' => 'vvi', 'GSVIVG01018116001' => 'vvi', 'GSVIVG01018118001' => 'vvi', 'HanXRQChr03g0076211' => 'han', 'HanXRQChr03g0092431' => 'han', 'HanXRQChr03g0092441' => 'han', 'HanXRQChr03g0092591' => 'han', 'HanXRQChr03g0092671' => 'han', 'HanXRQChr03g0092681' => 'han', 'HanXRQChr03g0092691' => 'han', 'HanXRQChr03g0092701' => 'han', 'HanXRQChr03g0092721' => 'han', 'HanXRQChr03g0092731' => 'han', 'HanXRQChr04g0113681' => 'han', 'HanXRQChr10g0281371' => 'han', 'HanXRQChr11g0337141' => 'han', 'HanXRQChr13g0424521' => 'han', 'HanXRQChr13g0424531' => 'han', 'HanXRQChr13g0424541' => 'han', 'HanXRQChr16g0498221' => 'han', 'Haze_04377' => 'cav', 'Haze_11298' => 'cav', 'Haze_24547' => 'cav', 'Haze_24550' => 'cav', 'Haze_26587' => 'cav', 'Hma1.2p1_0650F.1_g195410' => 'hma', 'Hma1.2p1_0893F.1_g233470' => 'hma', 'HPP92_006508' => 'vpl', 'HPP92_024780' => 'vpl', 'Hund02688' => 'sun', 'Hund09380' => 'sun', 'Hund09381' => 'sun', 'Hund09832' => 'sun', 'Hund09833' => 'sun', 'Hund11351' => 'sun', 'Hund11513' => 'sun', 'Lalb_Chr06g0162591' => 'lal', 'Lalb_Chr06g0162601' => 'lal', 'Lalb_Chr06g0169321' => 'lal', 'Lalb_Chr09g0330951' => 'lal', 'Lalb_Chr16g0387631' => 'lal', 'Lalb_Chr21g0306241' => 'lal', 'Lalb_Chr25g0290051' => 'lal', 'Lalb_Chr25g0290061' => 'lal', 'Lalb_Chr25g0290071' => 'lal', 'Lj1g0003876' => 'lja', 'Lj1P1207T36' => 'lonja', 'Lj2C1156G12' => 'lonja', 'Lj3A793G39' => 'lonja', 'Lj3C580G2' => 'lonja', 'Lj3C780G2' => 'lonja', 'Lj3C780T4' => 'lonja', 'Lj3C793G9' => 'lonja', 'Lj4g0012960' => 'lja', 'Lj5g0021252' => 'lja', 'Lj5g0021484' => 'lja', 'Lj5g0024528' => 'lja', 'Lj6A399T12' => 'lonja', 'Lj6A656G65' => 'lonja', 'Lsat_1_v5_gn_3_125500' => 'lsa', 'Lsat_1_v5_gn_3_125540' => 'lsa', 'Lsat_1_v5_gn_5_72701' => 'lsa', 'Lsat_1_v5_gn_8_91560' => 'lsa', 'Lsat_1_v5_gn_9_9640' => 'lsa', 'Manes.01G200600' => 'mes', 'Manes.01G200700' => 'mes', 'Manes.03G168900' => 'mes', 'Manes.03G169000' => 'mes', 'Manes.05G085801' => 'mes', 'Manes.05G086200' => 'mes', 'Manes.15G036700' => 'mes', 'Manes.15G036900' => 'mes', 'Mapoly0004s0172' => 'mpo', 'Mapoly0023s0001' => 'mpo', 'Mapoly0142s0012' => 'mpo', 'MBI01_g32854_MAGBIO' => 'mbi', 'MBI11_g24427_MAGBIO' => 'mbi', 'MBI11_g47319_MAGBIO' => 'mbi', 'MCO01G433' => 'mco', 'MD00G1187800' => 'mdo', 'MD04G1226500' => 'mdo', 'MD05G1203900' => 'mdo', 'MD10G1191100' => 'mdo', 'MD12G1243500' => 'mdo', 'MD13G1207000' => 'mdo', 'MD13G1207100' => 'mdo', 'MD16G1208600' => 'mdo', 'Medtr1g050352' => 'mtr', 'Medtr1g070385' => 'mtr', 'Medtr1g070450' => 'mtr', 'Medtr1g075200' => 'mtr', 'Medtr1g075250' => 'mtr', 'Medtr1g075260' => 'mtr', 'Medtr1g475250' => 'mtr', 'Medtr4g075450' => 'mtr', 'Medtr7g096300' => 'mtr', 'Medtr8g105110' => 'mtr', 'MELO3C006470.2' => 'cme', 'MELO3C006471.2' => 'cme', 'MELO3C020772.2' => 'cme', 'MELO3C026780.2' => 'cme', 'MELO3C026781.2' => 'cme', 'Migut.D00390' => 'egut', 'Migut.G00435' => 'egut', 'Migut.G00436' => 'egut', 'Migut.G00718' => 'egut', 'MSTRG.21891' => 'ama', 'MSTRG.26910' => 'ama', 'MSTRG.4099' => 'ama', 'MSTRG.9925' => 'ama', 'Nitab4.5_0000165g0010' => 'nta', 'Nitab4.5_0000209g0180' => 'nta', 'Nitab4.5_0000244g0440' => 'nta', 'Nitab4.5_0000525g0220' => 'nta', 'Nitab4.5_0001597g0020' => 'nta', 'Nitab4.5_0001878g0040' => 'nta', 'Nitab4.5_0001878g0060' => 'nta', 'Nitab4.5_0002838g0100' => 'nta', 'Nitab4.5_0002838g0120' => 'nta', 'Nitab4.5_0004798g0030' => 'nta', 'Nitab4.5_0005420g0010' => 'nta', 'Nitab4.5_0005507g0010' => 'nta', 'Nitab4.5_0005574g0020' => 'nta', 'Nitab4.5_0005838g0010' => 'nta', 'Nitab4.5_0010580g0020' => 'nta', 'Nn1g02599' => 'nnu', 'Nn1g02608' => 'nnu', 'Nn3g17742' => 'nnu', 'Nn3g19534' => 'nnu', 'Nn3g19535' => 'nnu', 'Oeu008790.1' => 'oeu', 'Oeu008792.1' => 'oeu', 'Oeu032590.1' => 'oeu', 'Oeu035349.1' => 'oeu', 'Oeu049791.1' => 'oeu', 'Os01g0774500' => 'osa', 'Os03g0628800' => 'osa', 'Os03g0798600' => 'osa', 'Os05g0508800' => 'osa', 'Peaxi162Scf00036g02018' => 'pax', 'Peaxi162Scf00578g00032' => 'pax', 'Peaxi162Scf00578g00317' => 'pax', 'Peaxi162Scf00785g00114' => 'pax', 'Peaxi162Scf00813g00119' => 'pax', 'Peaxi162Scf00906g00227' => 'pax', 'PGR004G0875' => 'pgr', 'PGR004G2424' => 'pgr', 'PGR031G1239' => 'pgr', 'PGR031G2474' => 'pgr', 'PGR044G0423' => 'pgr', 'PGSC0003DMG400001128' => 'stu', 'PGSC0003DMG400007336' => 'stu', 'PGSC0003DMG400016318' => 'stu', 'PGSC0003DMG400016319' => 'stu', 'PGSC0003DMG400018074' => 'stu', 'Phvul.001G157700' => 'pvu', 'Phvul.002G148550' => 'pvu', 'Phvul.002G320200' => 'pvu', 'Phvul.003G089200' => 'pvu', 'Phvul.007G126000' => 'pvu', 'Phvul.007G126100' => 'pvu', 'Phvul.007G178000' => 'pvu', 'Phvul.007G178200' => 'pvu', 'Potri.002G043000' => 'ptr', 'Potri.002G043200' => 'ptr', 'Potri.003G123750' => 'ptr', 'Potri.005G055401' => 'ptr', 'Potri.005G219700' => 'ptr', 'Potri.005G220000' => 'ptr', 'Potri.008G161901' => 'ptr', 'Potri.008G162000' => 'ptr', 'Potri.008G162400' => 'ptr', 'Potri.010G076900' => 'ptr', 'Pp3c12_9180' => 'ppa', 'Pp3c13_19770' => 'ppa', 'Pp3c14_22950' => 'ppa', 'Pp3c16_12160' => 'ppa', 'Pp3c27_7820' => 'ppa', 'Pp3c2_3490' => 'ppa', 'Pp3c3_23700' => 'ppa', 'Pp3c3_36520' => 'ppa', 'Pp3c4_15250' => 'ppa', 'PRCOL_00007002' => 'pco', 'Prupe.1G030600' => 'ppe', 'Prupe.1G030700' => 'ppe', 'Prupe.6G345200' => 'ppe', 'Prupe.8G230300' => 'ppe', 'Prupe.8G230500' => 'ppe', 'Psat3g059600' => 'psa', 'Psat5g200920' => 'psa', 'Psat6g056440' => 'psa', 'Psat6g057360' => 'psa', 'Psat6g134120' => 'psa', 'Psat6g134160' => 'psa', 'Psat7g008640' => 'psa', 'Psat7g185240' => 'psa', 'PSO017G1330' => 'pso', 'PSO063G6097' => 'pso', 'PSO170G0835' => 'pso', 'PSO170G2499' => 'pso', 'PSO210G5058' => 'pso', 'PSO210G6154' => 'pso', 'PSO585G0031' => 'pso', 'PSO832G0264' => 'pso', 'PSO832G4288' => 'pso', 'QL03p027355' => 'qlo', 'QL03p027430' => 'qlo', 'QL04p081380' => 'qlo', 'QL06p015642' => 'qlo', 'QL06p015650' => 'qlo', 'QL06p015686' => 'qlo', 'QL12p042927' => 'qlo', 'QL93p1863_0035' => 'qlo', 'RcHm_v2.0_Chr3g0450581' => 'rch', 'RcHm_v2.0_Chr4g0390371' => 'rch', 'RcHm_v2.0_Chr4g0390381' => 'rch', 'RcHm_v2.0_Chr4g0390491' => 'rch', 'RcHm_v2.0_Chr4g0390501' => 'rch', 'RcHm_v2.0_Chr6g0289231' => 'rch', 'Rhsim04G0190400' => 'rsi', 'Rhsim04G0190500' => 'rsi', 'Rhsim04G0190600' => 'rsi', 'Rhsim13G0031400' => 'rsi', 'Rhsim13G0165600' => 'rsi', 'RhsimUnG0114600' => 'rsi', 'RhsimUnG0114700' => 'rsi', 'Sabra02G0034800' => 'sbr', 'Sabra02G0035100' => 'sbr', 'Sabra05G0168600' => 'sbr', 'Sabra05G0168800' => 'sbr', 'Sabra08G0123700' => 'sbr', 'Sabra10G0031900' => 'sbr', 'Sabra13G0039000' => 'sbr', 'SalBow2G0782' => 'sbo', 'SalBow2G1403' => 'sbo', 'SalBow4G0074' => 'sbo', 'SalBow4G2635' => 'sbo', 'SalBow5G3010' => 'sbo', 'Sc05g0000870' => 'sci', 'Sc05g0000890' => 'sci', 'Sc13g0005000' => 'sci', 'Sc13g0005030' => 'sci', 'Sc19g0003790' => 'sci', 'Sc19g0003800' => 'sci', 'Sed0003467' => 'sed', 'Sed0009355' => 'sed', 'Sed0009894' => 'sed', 'Sed0011972' => 'sed', 'Sed0021483' => 'sed', 'Sed0021750' => 'sed', 'Sed0026279' => 'sed', 'SEGI_05312' => 'sgi', 'SEGI_10112' => 'sgi', 'SEGI_15835' => 'sgi', 'SEGI_30386' => 'sgi', 'SEGI_34122' => 'sgi', 'SEGI_35063' => 'sgi', 'SGA_v2.0_scaffold101G29794' => 'sas', 'SGA_v2.0_scaffold1G00573' => 'sas', 'SGA_v2.0_scaffold79G25637' => 'sas', 'SGA_v2.0_scaffold88G27283' => 'sas', 'SGA_v2.0_scaffold88G27285' => 'sas', 'SGA_v2.0_scaffold88G27331' => 'sas', 'SHI09937' => 'shi', 'SMO119G0302' => 'smo', 'SMO137G0231' => 'smo', 'SMO367G1151' => 'smo', 'Solyc02g082000.3' => 'sly', 'Solyc06g031670.3' => 'sly', 'Solyc06g053810.3' => 'sly', 'Solyc07g025457.1' => 'sly', 'Solyc08g059740.1' => 'sly', 'Solyc08g059750.3' => 'sly', 'Solyc09g083370.3' => 'sly', 'Solyc12g038950.3' => 'sly', 'Sopen02g026630' => 'spe', 'Sopen06g018930' => 'spe', 'Sopen06g018940' => 'spe', 'Sopen08g009460' => 'spe', 'Sopen09g032290' => 'spe', 'Sp1g03080' => 'spa', 'Sp1g03090' => 'spa', 'Sp1g05480' => 'spa', 'Sp2g07860' => 'spa', 'Sp2g08430' => 'spa', 'Sp2g08440' => 'spa', 'Sp2g26200' => 'spa', 'Sp4g13170' => 'spa', 'Sp6g33840' => 'spa', 'SpUn1204_0010' => 'spa', 'TAR365G0908' => 'tar', 'TAR381G1270' => 'tar', 'TAR381G1651' => 'tar', 'TAR625G1131' => 'tar', 'TAR633G0962' => 'tar', 'TAR633G1729' => 'tar', 'TAR633G1864' => 'tar', 'TAR636G0221' => 'tar', 'TAR636G0314' => 'tar', 'TAR636G3202' => 'tar', 'THA.LOC104800805' => 'tha', 'THA.LOC104801096' => 'tha', 'THA.LOC104801555' => 'tha', 'THA.LOC104808491' => 'tha', 'THA.LOC104808595' => 'tha', 'THA.LOC104815985' => 'tha', 'THA.LOC104822250' => 'tha', 'THA.LOC104826071' => 'tha', 'Thecc.01G265200' => 'tca', 'Thecc.01G265300' => 'tca', 'Thecc.01G265700' => 'tca', 'Thecc.03G109100' => 'tca', 'Thecc.04G245900' => 'tca', 'Thecc.04G246000' => 'tca', 'Thhalv10003334m.g' => 'esa', 'Thhalv10005508m.g' => 'esa', 'Thhalv10005643m.g' => 'esa', 'Thhalv10007316m.g' => 'esa', 'Thhalv10009006m.g' => 'esa', 'Thhalv10009309m.g' => 'esa', 'Thhalv10014917m.g' => 'esa', 'Thhalv10014919m.g' => 'esa', 'Thhalv10015393m.g' => 'esa', 'Thhalv10016515m.g' => 'esa', 'Thhalv10029242m.g' => 'esa', 'TPR.G16654' => 'tpr', 'TPR.G20589' => 'tpr', 'TPR.G23029' => 'tpr', 'TPR.G27731' => 'tpr', 'TPR.G28889' => 'tpr', 'TPR.G28899' => 'tpr', 'TPR.G30846' => 'tpr', 'TPR.G5452' => 'tpr', 'TPR.G5713' => 'tpr', 'TPR.G9046' => 'tpr', 'TPR.G9061' => 'tpr', 'TWI09G1075' => 'twi', 'TWI12G0806' => 'twi', 'TWI18G0108' => 'twi', 'TWI53G1361' => 'twi', 'TWI73G0185' => 'twi', 'TWI73G0427' => 'twi', 'unitig_37.g12001' => 'ugi', 'unitig_747.g21660' => 'ugi', 'unitig_748.g7232' => 'ugi', 'unitig_748.g7315' => 'ugi', 'unitig_85.g27262' => 'ugi', 'unitig_92.g28220' => 'ugi', 'vmacro02632' => 'vma', 'vmacro08410' => 'vma', 'vmacro08411' => 'vma', 'vmacro15407' => 'vma', 'VMungo0251G3619' => 'vmu', 'VMungo0720G1204' => 'vmu', 'VMungo0720G1918' => 'vmu', 'VMungo0720G2387' => 'vmu', 'VMungo0720G2961' => 'vmu', 'VMungo1215G2154' => 'vmu', 'VMungo1383G2411' => 'vmu', 'Zm00001eb051130' => 'zma', 'Zm00001eb116830' => 'zma', 'Zm00001eb116850' => 'zma', 'Zm00001eb151740' => 'zma', 'Zm00001eb292360' => 'zma', 'Zm00001eb301640' => 'zma' ) $gf_id = 'HOM05D000856' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000856' ) $data_identifier = 'HOM05D000856' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 13, 'ath' => (int) 10, 'atr' => (int) 1, 'acertr' => (int) 8, 'cqu' => (int) 6, 'bca' => (int) 21, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 11, 'car' => (int) 9, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 8, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 5, 'fan' => (int) 16, 'fve' => (int) 6, 'gma' => (int) 11, 'ghi' => (int) 19, 'gra' => (int) 9, 'vvi' => (int) 7, 'han' => (int) 17, 'cav' => (int) 5, 'hma' => (int) 2, 'vpl' => (int) 2, 'sun' => (int) 7, 'lal' => (int) 9, 'lja' => (int) 5, 'lonja' => (int) 9, 'lsa' => (int) 5, 'mes' => (int) 8, 'mpo' => (int) 3, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 10, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 15, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 9, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 9, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 6, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 5, 'spa' => (int) 10, 'tar' => (int) 10, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 11, 'tpr' => (int) 11, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 4, 'vmu' => (int) 7, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb301640' $species_info = array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ) $local_species = 'din' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000856', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p00010' => 'bna', 'A03p04160' => 'bna', 'A03p17160' => 'bna', 'A04p23370' => 'bna', 'A05p14860' => 'bna', 'A08p37020' => 'bna', 'A09p08050' => 'bna', 'A09p66800' => 'bna', 'A09p67940' => 'bna', 'A10p02680' => 'bna', 'A10p05320' => 'bna', 'Aa31LG1G20560' => 'aar', 'Aa31LG1G20610' => 'aar', 'Aa31LG1G7810' => 'aar', 'Aa31LG5G3590' => 'aar', 'Aa31LG5G6140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3819' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4683' => 'aag', 'Actinidia04480' => 'ach', 'Actinidia05466' => 'ach', 'Actinidia08445' => 'ach', 'Actinidia21170' => 'ach', 'Actinidia24812' => 'ach', 'Actinidia24951' => 'ach', 'Actinidia40088' => 'ach', 'Ah.02g111660' => 'amhyb', 'Ah.11g048900' => 'amhyb', 'Ah.11g049910' => 'amhyb', 'AL1G13870' => 'aly', 'AL1G13880' => 'aly', 'AL1G16760' => 'aly', 'AL390U10020' => 'aly', 'AL4G25520' => 'aly', 'AL6G19890' => 'aly', 'AL6G19900' => 'aly', 'AL6G19910' => 'aly', 'AL8G40100' => 'aly', 'Aqoxy2G03562' => 'aox', 'Aqoxy5G00316' => 'aox', 'Aqoxy5G00926' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1628KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1H403S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2FU6SJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.882I6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8YRY2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YN1SN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AF70II' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZA8L1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F916KL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHRD8H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KTZ8QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S22EMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8M29T' => 'arhy', 'AT1G04270' => 'ath', 'AT1G04280' => 'ath', 'AT1G06750' => 'ath', 'AT1G33850' => 'ath', 'AT2G30630' => 'ath', 'AT5G09490' => 'ath', 'AT5G09500' => 'ath', 'AT5G09510' => 'ath', 'AT5G43640' => 'ath', 'AT5G63070' => 'ath', 'ATR0605G315' => 'atr', 'Atru.chr11.175' => 'acertr', 'Atru.chr11.653' => 'acertr', 'Atru.chr3.1616' => 'acertr', 'Atru.chr4.2230' => 'acertr', 'Atru.chr4.2232' => 'acertr', 'Atru.chr5.1598' => 'acertr', 'Atru.chr5.1600' => 'acertr', 'Atru.chr5.2188' => 'acertr', 'AUR62008326' => 'cqu', 'AUR62011922' => 'cqu', 'AUR62011924' => 'cqu', 'AUR62021771' => 'cqu', 'AUR62032237' => 'cqu', 'AUR62032240' => 'cqu', 'BcaB01g05572' => 'bca', 'BcaB02g10337' => 'bca', 'BcaB04g19944' => 'bca', 'BcaB05g21548' => 'bca', 'BcaB05g21549' => 'bca', 'BcaB05g23227' => 'bca', 'BcaB06g26256' => 'bca', 'BcaB06g26257' => 'bca', 'BcaB06g28379' => 'bca', 'BcaC02g11159' => 'bca', 'BcaC03g13258' => 'bca', 'BcaC03g13259' => 'bca', 'BcaC05g24456' => 'bca', 'BcaC05g24457' => 'bca', 'BcaC07g36922' => 'bca', 'BcaC07g36923' => 'bca', 'BcaC07g42050' => 'bca', 'BcaC07g42176' => 'bca', 'BcaC07g42195' => 'bca', 'BcaC07g42196' => 'bca', 'BcaNung06674' => 'bca', 'BolC2t06351H' => 'bol', 'BolC2t06352H' => 'bol', 'BolC3t12993H' => 'bol', 'BolC4t23525H' => 'bol', 'BolC4t27475H' => 'bol', 'BolC5t29025H' => 'bol', 'BolC5t29026H' => 'bol', 'BolC8t46898H' => 'bol', 'BolC8t46899H' => 'bol', 'BolC8t52630H' => 'bol', 'BolC8t52765H' => 'bol', 'BolC9t53824H' => 'bol', 'BraA03t09760Z' => 'bra', 'BraA03t10990Z' => 'bra', 'BraA05t20413Z' => 'bra', 'BraA08t35602Z' => 'bra', 'BraA09t36458Z' => 'bra', 'BraA09t42018Z' => 'bra', 'BraA09t42129Z' => 'bra', 'BraA10t42536Z' => 'bra', 'BraA10t42537Z' => 'bra', 'C01p10690' => 'bna', 'C02p03890' => 'bna', 'C02p03900' => 'bna', 'C03p04620' => 'bna', 'C04p19870' => 'bna', 'C04p59670' => 'bna', 'C05p02460' => 'bna', 'C05p02470' => 'bna', 'C08p00980' => 'bna', 'C08p00990' => 'bna', 'C08p51030' => 'bna', 'C08p52360' => 'bna', 'C09p09120' => 'bna', 'CAN.G19.15' => 'can', 'CAN.G251.10' => 'can', 'CAN.G251.9' => 'can', 'CAN.G398.24' => 'can', 'CAN.G410.32' => 'can', 'CAN.G881.2' => 'can', 'CANSAT01G3025' => 'cansat', 'CANSAT78G1211' => 'cansat', 'CANSAT78G1218' => 'cansat', 'CANSAT78G1521' => 'cansat', 'CANSAT78G1670' => 'cansat', 'CARHR003600' => 'chi', 'CARHR003610' => 'chi', 'CARHR006290' => 'chi', 'CARHR006430' => 'chi', 'CARHR124110' => 'chi', 'CARHR203870' => 'chi', 'CARHR203880' => 'chi', 'CARHR203890' => 'chi', 'CARHR276880' => 'chi', 'Carub.0001s0346' => 'cru', 'Carub.0001s0347' => 'cru', 'Carub.0001s0607' => 'cru', 'Carub.0003s2768' => 'cru', 'Carub.0003s2769' => 'cru', 'Carub.0004s1178' => 'cru', 'Carub.0006s0806' => 'cru', 'Carub.0006s0807' => 'cru', 'Carub.0006s0808' => 'cru', 'Carub.0008s0501' => 'cru', 'Carub.0008s2379' => 'cru', 'Ca_08655_v3' => 'car', 'Ca_08922_v3' => 'car', 'Ca_08923_v3' => 'car', 'Ca_09119_v3' => 'car', 'Ca_09703_v3' => 'car', 'Ca_09705_v3' => 'car', 'Ca_09835_v3' => 'car', 'Ca_26403_v3' => 'car', 'Ca_30719_v3' => 'car', 'CBR_g17958' => 'cbr', 'CBR_g40516' => 'cbr', 'Cc00_g05350' => 'ccan', 'Cc01_g18690' => 'ccan', 'Cc03_g04830' => 'ccan', 'Cc03_g04850' => 'ccan', 'CDE02G4469' => 'cde', 'CDE06G0883' => 'cde', 'CDE06G1295' => 'cde', 'CDE06G1390' => 'cde', 'CDE07G0584' => 'cde', 'CDE07G1084' => 'cde', 'CDE08G1259' => 'cde', 'Cfa002341' => 'cfa', 'Cfa024337' => 'cfa', 'Ciclev10004749m.g' => 'ccl', 'Ciclev10006127m.g' => 'ccl', 'Ciclev10019720m.g' => 'ccl', 'Ciclev10022652m.g' => 'ccl', 'CiPaw.01G190400' => 'cil', 'CiPaw.01G190500' => 'cil', 'CiPaw.02G116400' => 'cil', 'CiPaw.02G116500' => 'cil', 'CiPaw.04G183000' => 'cil', 'CiPaw.04G183300' => 'cil', 'ClCG05G004610' => 'cla', 'ClCG05G004620' => 'cla', 'ClCG06G006730' => 'cla', 'ClCG06G006740' => 'cla', 'ClCG11G003690' => 'cla', 'COL.COLO4_08276' => 'col', 'COL.COLO4_08277' => 'col', 'COL.COLO4_15787' => 'col', 'COL.COLO4_15789' => 'col', 'Cpa.g.c44815' => 'cpa', 'Cpa.g.sc52.144' => 'cpa', 'Cpa.g.sc58.46' => 'cpa', 'Cpa.g.sc58.47' => 'cpa', 'Cre08.g360900' => 'cre', 'CsaV3_2G013030' => 'csa', 'CsaV3_2G013050' => 'csa', 'CsaV3_2G015620' => 'csa', 'CsaV3_3G012590' => 'csa', 'CsaV3_3G012600' => 'csa', 'CSS0001641' => 'camsi', 'CSS0008310' => 'camsi', 'CSS0013011' => 'camsi', 'CSS0017147' => 'camsi', 'CSS0022970' => 'camsi', 'CSS0025655' => 'camsi', 'CSS0028665' => 'camsi', 'CSS0029117' => 'camsi', 'CSS0032024' => 'camsi', 'CSS0039681' => 'camsi', 'CSS0046516' => 'camsi', 'CSS0050307' => 'camsi', 'DCAR_005871' => 'dca', 'DCAR_007342' => 'dca', 'DCAR_024228' => 'dca', 'DCAR_027277' => 'dca', 'DCAR_030718' => 'dca', 'Dinv20287' => 'din', 'Dinv22461' => 'din', 'Dinv22464' => 'din', 'Dinv29912' => 'din', 'Dinv29913' => 'din', 'Dinv34580' => 'din', 'Dinv34582' => 'din', 'Dinv44632' => 'din', 'Duzib052G0266' => 'dzi', 'Duzib133G0907' => 'dzi', 'Duzib133G1034' => 'dzi', 'Duzib138G0207' => 'dzi', 'Duzib138G0491' => 'dzi', 'Duzib151G0812' => 'dzi', 'Duzib151G1166' => 'dzi', 'Duzib168G0192' => 'dzi', 'Duzib211G0077' => 'dzi', 'Duzib212G0429' => 'dzi', 'Duzib212G0472' => 'dzi', 'ECA233G2617' => 'eca', 'ECA236G4188' => 'eca', 'ECA240G0936' => 'eca', 'ECA240G1129' => 'eca', 'ECA247G0623' => 'eca', 'EL10Ac5g10451' => 'bvu', 'EL10Ac5g10453' => 'bvu', 'EL10Ac5g10894' => 'bvu', 'Eucgr.H00192' => 'egr', 'Eucgr.H00193' => 'egr', 'Eucgr.H00194' => 'egr', 'Eucgr.J01562' => 'egr', 'Eucgr.K03301' => 'egr', 'FAN02G0632' => 'fan', 'FAN05G5378' => 'fan', 'FAN09G3247' => 'fan', 'FAN12G0435' => 'fan', 'FAN12G2426' => 'fan', 'FAN14G1707' => 'fan', 'FAN14G4725' => 'fan', 'FAN15G2071' => 'fan', 'FAN17G3065' => 'fan', 'FAN19G1376' => 'fan', 'FAN20G0354' => 'fan', 'FAN20G2429' => 'fan', 'FAN20G2658' => 'fan', 'FAN24G2343' => 'fan', 'FAN27G2362' => 'fan', 'FAN28G1765' => 'fan', 'FvH4_1g16020' => 'fve', 'FvH4_2g04890' => 'fve', 'FvH4_2g22270' => 'fve', 'FvH4_4g02630' => 'fve', 'FvH4_4g02640' => 'fve', 'FvH4_6g02650' => 'fve', 'Glyma.02G140600' => 'gma', 'Glyma.03G159900' => 'gma', 'Glyma.05G234800' => 'gma', 'Glyma.07G269600' => 'gma', 'Glyma.08G042300' => 'gma', 'Glyma.10G033500' => 'gma', 'Glyma.10G185200' => 'gma', 'Glyma.17G004300' => 'gma', 'Glyma.19G161900' => 'gma', 'Glyma.20G205100' => 'gma', 'Glyma.20G205200' => 'gma', 'Gohir.A01G139101' => 'ghi', 'Gohir.A02G035600' => 'ghi', 'Gohir.A02G117901' => 'ghi', 'Gohir.A07G210100' => 'ghi', 'Gohir.A07G210200' => 'ghi', 'Gohir.A08G061100' => 'ghi', 'Gohir.A09G223000' => 'ghi', 'Gohir.A09G223100' => 'ghi', 'Gohir.A10G113900' => 'ghi', 'Gohir.A10G114000' => 'ghi', 'Gohir.D02G042300' => 'ghi', 'Gohir.D07G216100' => 'ghi', 'Gohir.D07G216200' => 'ghi', 'Gohir.D08G070400' => 'ghi', 'Gohir.D09G225000' => 'ghi', 'Gohir.D09G225100' => 'ghi', 'Gohir.D10G152300' => 'ghi', 'Gohir.D10G153200' => 'ghi', 'Gohir.D11G133701' => 'ghi', 'Gorai.004G074100' => 'gra', 'Gorai.005G046800' => 'gra', 'Gorai.006G246500' => 'gra', 'Gorai.006G246600' => 'gra', 'Gorai.007G142900' => 'gra', 'Gorai.011G171000' => 'gra', 'Gorai.011G171100' => 'gra', 'Gorai.013G104300' => 'gra', 'Gorai.013G104400' => 'gra', 'GSVIVG01000754001' => 'vvi', 'GSVIVG01000756001' => 'vvi', 'GSVIVG01010903001' => 'vvi', 'GSVIVG01017623001' => 'vvi', 'GSVIVG01018113001' => 'vvi', 'GSVIVG01018116001' => 'vvi', 'GSVIVG01018118001' => 'vvi', 'HanXRQChr03g0076211' => 'han', 'HanXRQChr03g0092431' => 'han', 'HanXRQChr03g0092441' => 'han', 'HanXRQChr03g0092591' => 'han', 'HanXRQChr03g0092671' => 'han', 'HanXRQChr03g0092681' => 'han', 'HanXRQChr03g0092691' => 'han', 'HanXRQChr03g0092701' => 'han', 'HanXRQChr03g0092721' => 'han', 'HanXRQChr03g0092731' => 'han', 'HanXRQChr04g0113681' => 'han', 'HanXRQChr10g0281371' => 'han', 'HanXRQChr11g0337141' => 'han', 'HanXRQChr13g0424521' => 'han', 'HanXRQChr13g0424531' => 'han', 'HanXRQChr13g0424541' => 'han', 'HanXRQChr16g0498221' => 'han', 'Haze_04377' => 'cav', 'Haze_11298' => 'cav', 'Haze_24547' => 'cav', 'Haze_24550' => 'cav', 'Haze_26587' => 'cav', 'Hma1.2p1_0650F.1_g195410' => 'hma', 'Hma1.2p1_0893F.1_g233470' => 'hma', 'HPP92_006508' => 'vpl', 'HPP92_024780' => 'vpl', 'Hund02688' => 'sun', 'Hund09380' => 'sun', 'Hund09381' => 'sun', 'Hund09832' => 'sun', 'Hund09833' => 'sun', 'Hund11351' => 'sun', 'Hund11513' => 'sun', 'Lalb_Chr06g0162591' => 'lal', 'Lalb_Chr06g0162601' => 'lal', 'Lalb_Chr06g0169321' => 'lal', 'Lalb_Chr09g0330951' => 'lal', 'Lalb_Chr16g0387631' => 'lal', 'Lalb_Chr21g0306241' => 'lal', 'Lalb_Chr25g0290051' => 'lal', 'Lalb_Chr25g0290061' => 'lal', 'Lalb_Chr25g0290071' => 'lal', 'Lj1g0003876' => 'lja', 'Lj1P1207T36' => 'lonja', 'Lj2C1156G12' => 'lonja', 'Lj3A793G39' => 'lonja', 'Lj3C580G2' => 'lonja', 'Lj3C780G2' => 'lonja', 'Lj3C780T4' => 'lonja', 'Lj3C793G9' => 'lonja', 'Lj4g0012960' => 'lja', 'Lj5g0021252' => 'lja', 'Lj5g0021484' => 'lja', 'Lj5g0024528' => 'lja', 'Lj6A399T12' => 'lonja', 'Lj6A656G65' => 'lonja', 'Lsat_1_v5_gn_3_125500' => 'lsa', 'Lsat_1_v5_gn_3_125540' => 'lsa', 'Lsat_1_v5_gn_5_72701' => 'lsa', 'Lsat_1_v5_gn_8_91560' => 'lsa', 'Lsat_1_v5_gn_9_9640' => 'lsa', 'Manes.01G200600' => 'mes', 'Manes.01G200700' => 'mes', 'Manes.03G168900' => 'mes', 'Manes.03G169000' => 'mes', 'Manes.05G085801' => 'mes', 'Manes.05G086200' => 'mes', 'Manes.15G036700' => 'mes', 'Manes.15G036900' => 'mes', 'Mapoly0004s0172' => 'mpo', 'Mapoly0023s0001' => 'mpo', 'Mapoly0142s0012' => 'mpo', 'MBI01_g32854_MAGBIO' => 'mbi', 'MBI11_g24427_MAGBIO' => 'mbi', 'MBI11_g47319_MAGBIO' => 'mbi', 'MCO01G433' => 'mco', 'MD00G1187800' => 'mdo', 'MD04G1226500' => 'mdo', 'MD05G1203900' => 'mdo', 'MD10G1191100' => 'mdo', 'MD12G1243500' => 'mdo', 'MD13G1207000' => 'mdo', 'MD13G1207100' => 'mdo', 'MD16G1208600' => 'mdo', 'Medtr1g050352' => 'mtr', 'Medtr1g070385' => 'mtr', 'Medtr1g070450' => 'mtr', 'Medtr1g075200' => 'mtr', 'Medtr1g075250' => 'mtr', 'Medtr1g075260' => 'mtr', 'Medtr1g475250' => 'mtr', 'Medtr4g075450' => 'mtr', 'Medtr7g096300' => 'mtr', 'Medtr8g105110' => 'mtr', 'MELO3C006470.2' => 'cme', 'MELO3C006471.2' => 'cme', 'MELO3C020772.2' => 'cme', 'MELO3C026780.2' => 'cme', 'MELO3C026781.2' => 'cme', 'Migut.D00390' => 'egut', 'Migut.G00435' => 'egut', 'Migut.G00436' => 'egut', 'Migut.G00718' => 'egut', 'MSTRG.21891' => 'ama', 'MSTRG.26910' => 'ama', 'MSTRG.4099' => 'ama', 'MSTRG.9925' => 'ama', 'Nitab4.5_0000165g0010' => 'nta', 'Nitab4.5_0000209g0180' => 'nta', 'Nitab4.5_0000244g0440' => 'nta', 'Nitab4.5_0000525g0220' => 'nta', 'Nitab4.5_0001597g0020' => 'nta', 'Nitab4.5_0001878g0040' => 'nta', 'Nitab4.5_0001878g0060' => 'nta', 'Nitab4.5_0002838g0100' => 'nta', 'Nitab4.5_0002838g0120' => 'nta', 'Nitab4.5_0004798g0030' => 'nta', 'Nitab4.5_0005420g0010' => 'nta', 'Nitab4.5_0005507g0010' => 'nta', 'Nitab4.5_0005574g0020' => 'nta', 'Nitab4.5_0005838g0010' => 'nta', 'Nitab4.5_0010580g0020' => 'nta', 'Nn1g02599' => 'nnu', 'Nn1g02608' => 'nnu', 'Nn3g17742' => 'nnu', 'Nn3g19534' => 'nnu', 'Nn3g19535' => 'nnu', 'Oeu008790.1' => 'oeu', 'Oeu008792.1' => 'oeu', 'Oeu032590.1' => 'oeu', 'Oeu035349.1' => 'oeu', 'Oeu049791.1' => 'oeu', 'Os01g0774500' => 'osa', 'Os03g0628800' => 'osa', 'Os03g0798600' => 'osa', 'Os05g0508800' => 'osa', 'Peaxi162Scf00036g02018' => 'pax', 'Peaxi162Scf00578g00032' => 'pax', 'Peaxi162Scf00578g00317' => 'pax', 'Peaxi162Scf00785g00114' => 'pax', 'Peaxi162Scf00813g00119' => 'pax', 'Peaxi162Scf00906g00227' => 'pax', 'PGR004G0875' => 'pgr', 'PGR004G2424' => 'pgr', 'PGR031G1239' => 'pgr', 'PGR031G2474' => 'pgr', 'PGR044G0423' => 'pgr', 'PGSC0003DMG400001128' => 'stu', 'PGSC0003DMG400007336' => 'stu', 'PGSC0003DMG400016318' => 'stu', 'PGSC0003DMG400016319' => 'stu', 'PGSC0003DMG400018074' => 'stu', 'Phvul.001G157700' => 'pvu', 'Phvul.002G148550' => 'pvu', 'Phvul.002G320200' => 'pvu', 'Phvul.003G089200' => 'pvu', 'Phvul.007G126000' => 'pvu', 'Phvul.007G126100' => 'pvu', 'Phvul.007G178000' => 'pvu', 'Phvul.007G178200' => 'pvu', 'Potri.002G043000' => 'ptr', 'Potri.002G043200' => 'ptr', 'Potri.003G123750' => 'ptr', 'Potri.005G055401' => 'ptr', 'Potri.005G219700' => 'ptr', 'Potri.005G220000' => 'ptr', 'Potri.008G161901' => 'ptr', 'Potri.008G162000' => 'ptr', 'Potri.008G162400' => 'ptr', 'Potri.010G076900' => 'ptr', 'Pp3c12_9180' => 'ppa', 'Pp3c13_19770' => 'ppa', 'Pp3c14_22950' => 'ppa', 'Pp3c16_12160' => 'ppa', 'Pp3c27_7820' => 'ppa', 'Pp3c2_3490' => 'ppa', 'Pp3c3_23700' => 'ppa', 'Pp3c3_36520' => 'ppa', 'Pp3c4_15250' => 'ppa', 'PRCOL_00007002' => 'pco', 'Prupe.1G030600' => 'ppe', 'Prupe.1G030700' => 'ppe', 'Prupe.6G345200' => 'ppe', 'Prupe.8G230300' => 'ppe', 'Prupe.8G230500' => 'ppe', 'Psat3g059600' => 'psa', 'Psat5g200920' => 'psa', 'Psat6g056440' => 'psa', 'Psat6g057360' => 'psa', 'Psat6g134120' => 'psa', 'Psat6g134160' => 'psa', 'Psat7g008640' => 'psa', 'Psat7g185240' => 'psa', 'PSO017G1330' => 'pso', 'PSO063G6097' => 'pso', 'PSO170G0835' => 'pso', 'PSO170G2499' => 'pso', 'PSO210G5058' => 'pso', 'PSO210G6154' => 'pso', 'PSO585G0031' => 'pso', 'PSO832G0264' => 'pso', 'PSO832G4288' => 'pso', 'QL03p027355' => 'qlo', 'QL03p027430' => 'qlo', 'QL04p081380' => 'qlo', 'QL06p015642' => 'qlo', 'QL06p015650' => 'qlo', 'QL06p015686' => 'qlo', 'QL12p042927' => 'qlo', 'QL93p1863_0035' => 'qlo', 'RcHm_v2.0_Chr3g0450581' => 'rch', 'RcHm_v2.0_Chr4g0390371' => 'rch', 'RcHm_v2.0_Chr4g0390381' => 'rch', 'RcHm_v2.0_Chr4g0390491' => 'rch', 'RcHm_v2.0_Chr4g0390501' => 'rch', 'RcHm_v2.0_Chr6g0289231' => 'rch', 'Rhsim04G0190400' => 'rsi', 'Rhsim04G0190500' => 'rsi', 'Rhsim04G0190600' => 'rsi', 'Rhsim13G0031400' => 'rsi', 'Rhsim13G0165600' => 'rsi', 'RhsimUnG0114600' => 'rsi', 'RhsimUnG0114700' => 'rsi', 'Sabra02G0034800' => 'sbr', 'Sabra02G0035100' => 'sbr', 'Sabra05G0168600' => 'sbr', 'Sabra05G0168800' => 'sbr', 'Sabra08G0123700' => 'sbr', 'Sabra10G0031900' => 'sbr', 'Sabra13G0039000' => 'sbr', 'SalBow2G0782' => 'sbo', 'SalBow2G1403' => 'sbo', 'SalBow4G0074' => 'sbo', 'SalBow4G2635' => 'sbo', 'SalBow5G3010' => 'sbo', 'Sc05g0000870' => 'sci', 'Sc05g0000890' => 'sci', 'Sc13g0005000' => 'sci', 'Sc13g0005030' => 'sci', 'Sc19g0003790' => 'sci', 'Sc19g0003800' => 'sci', 'Sed0003467' => 'sed', 'Sed0009355' => 'sed', 'Sed0009894' => 'sed', 'Sed0011972' => 'sed', 'Sed0021483' => 'sed', 'Sed0021750' => 'sed', 'Sed0026279' => 'sed', 'SEGI_05312' => 'sgi', 'SEGI_10112' => 'sgi', 'SEGI_15835' => 'sgi', 'SEGI_30386' => 'sgi', 'SEGI_34122' => 'sgi', 'SEGI_35063' => 'sgi', 'SGA_v2.0_scaffold101G29794' => 'sas', 'SGA_v2.0_scaffold1G00573' => 'sas', 'SGA_v2.0_scaffold79G25637' => 'sas', 'SGA_v2.0_scaffold88G27283' => 'sas', 'SGA_v2.0_scaffold88G27285' => 'sas', 'SGA_v2.0_scaffold88G27331' => 'sas', 'SHI09937' => 'shi', 'SMO119G0302' => 'smo', 'SMO137G0231' => 'smo', 'SMO367G1151' => 'smo', 'Solyc02g082000.3' => 'sly', 'Solyc06g031670.3' => 'sly', 'Solyc06g053810.3' => 'sly', 'Solyc07g025457.1' => 'sly', 'Solyc08g059740.1' => 'sly', 'Solyc08g059750.3' => 'sly', 'Solyc09g083370.3' => 'sly', 'Solyc12g038950.3' => 'sly', 'Sopen02g026630' => 'spe', 'Sopen06g018930' => 'spe', 'Sopen06g018940' => 'spe', 'Sopen08g009460' => 'spe', 'Sopen09g032290' => 'spe', 'Sp1g03080' => 'spa', 'Sp1g03090' => 'spa', 'Sp1g05480' => 'spa', 'Sp2g07860' => 'spa', 'Sp2g08430' => 'spa', 'Sp2g08440' => 'spa', 'Sp2g26200' => 'spa', 'Sp4g13170' => 'spa', 'Sp6g33840' => 'spa', 'SpUn1204_0010' => 'spa', 'TAR365G0908' => 'tar', 'TAR381G1270' => 'tar', 'TAR381G1651' => 'tar', 'TAR625G1131' => 'tar', 'TAR633G0962' => 'tar', 'TAR633G1729' => 'tar', 'TAR633G1864' => 'tar', 'TAR636G0221' => 'tar', 'TAR636G0314' => 'tar', 'TAR636G3202' => 'tar', 'THA.LOC104800805' => 'tha', 'THA.LOC104801096' => 'tha', 'THA.LOC104801555' => 'tha', 'THA.LOC104808491' => 'tha', 'THA.LOC104808595' => 'tha', 'THA.LOC104815985' => 'tha', 'THA.LOC104822250' => 'tha', 'THA.LOC104826071' => 'tha', 'Thecc.01G265200' => 'tca', 'Thecc.01G265300' => 'tca', 'Thecc.01G265700' => 'tca', 'Thecc.03G109100' => 'tca', 'Thecc.04G245900' => 'tca', 'Thecc.04G246000' => 'tca', 'Thhalv10003334m.g' => 'esa', 'Thhalv10005508m.g' => 'esa', 'Thhalv10005643m.g' => 'esa', 'Thhalv10007316m.g' => 'esa', 'Thhalv10009006m.g' => 'esa', 'Thhalv10009309m.g' => 'esa', 'Thhalv10014917m.g' => 'esa', 'Thhalv10014919m.g' => 'esa', 'Thhalv10015393m.g' => 'esa', 'Thhalv10016515m.g' => 'esa', 'Thhalv10029242m.g' => 'esa', 'TPR.G16654' => 'tpr', 'TPR.G20589' => 'tpr', 'TPR.G23029' => 'tpr', 'TPR.G27731' => 'tpr', 'TPR.G28889' => 'tpr', 'TPR.G28899' => 'tpr', 'TPR.G30846' => 'tpr', 'TPR.G5452' => 'tpr', 'TPR.G5713' => 'tpr', 'TPR.G9046' => 'tpr', 'TPR.G9061' => 'tpr', 'TWI09G1075' => 'twi', 'TWI12G0806' => 'twi', 'TWI18G0108' => 'twi', 'TWI53G1361' => 'twi', 'TWI73G0185' => 'twi', 'TWI73G0427' => 'twi', 'unitig_37.g12001' => 'ugi', 'unitig_747.g21660' => 'ugi', 'unitig_748.g7232' => 'ugi', 'unitig_748.g7315' => 'ugi', 'unitig_85.g27262' => 'ugi', 'unitig_92.g28220' => 'ugi', 'vmacro02632' => 'vma', 'vmacro08410' => 'vma', 'vmacro08411' => 'vma', 'vmacro15407' => 'vma', 'VMungo0251G3619' => 'vmu', 'VMungo0720G1204' => 'vmu', 'VMungo0720G1918' => 'vmu', 'VMungo0720G2387' => 'vmu', 'VMungo0720G2961' => 'vmu', 'VMungo1215G2154' => 'vmu', 'VMungo1383G2411' => 'vmu', 'Zm00001eb051130' => 'zma', 'Zm00001eb116830' => 'zma', 'Zm00001eb116850' => 'zma', 'Zm00001eb151740' => 'zma', 'Zm00001eb292360' => 'zma', 'Zm00001eb301640' => 'zma' ), 'gf_id' => 'HOM05D000856', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000856' ), 'data_identifier' => 'HOM05D000856', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000856', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p00010' => 'bna', 'A03p04160' => 'bna', 'A03p17160' => 'bna', 'A04p23370' => 'bna', 'A05p14860' => 'bna', 'A08p37020' => 'bna', 'A09p08050' => 'bna', 'A09p66800' => 'bna', 'A09p67940' => 'bna', 'A10p02680' => 'bna', 'A10p05320' => 'bna', 'Aa31LG1G20560' => 'aar', 'Aa31LG1G20610' => 'aar', 'Aa31LG1G7810' => 'aar', 'Aa31LG5G3590' => 'aar', 'Aa31LG5G6140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3819' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4683' => 'aag', 'Actinidia04480' => 'ach', 'Actinidia05466' => 'ach', 'Actinidia08445' => 'ach', 'Actinidia21170' => 'ach', 'Actinidia24812' => 'ach', 'Actinidia24951' => 'ach', 'Actinidia40088' => 'ach', 'Ah.02g111660' => 'amhyb', 'Ah.11g048900' => 'amhyb', 'Ah.11g049910' => 'amhyb', 'AL1G13870' => 'aly', 'AL1G13880' => 'aly', 'AL1G16760' => 'aly', 'AL390U10020' => 'aly', 'AL4G25520' => 'aly', 'AL6G19890' => 'aly', 'AL6G19900' => 'aly', 'AL6G19910' => 'aly', 'AL8G40100' => 'aly', 'Aqoxy2G03562' => 'aox', 'Aqoxy5G00316' => 'aox', 'Aqoxy5G00926' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1628KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1H403S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2FU6SJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.882I6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8YRY2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YN1SN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AF70II' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZA8L1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F916KL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHRD8H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KTZ8QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S22EMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8M29T' => 'arhy', 'AT1G04270' => 'ath', 'AT1G04280' => 'ath', 'AT1G06750' => 'ath', 'AT1G33850' => 'ath', 'AT2G30630' => 'ath', 'AT5G09490' => 'ath', 'AT5G09500' => 'ath', 'AT5G09510' => 'ath', 'AT5G43640' => 'ath', 'AT5G63070' => 'ath', 'ATR0605G315' => 'atr', 'Atru.chr11.175' => 'acertr', 'Atru.chr11.653' => 'acertr', 'Atru.chr3.1616' => 'acertr', 'Atru.chr4.2230' => 'acertr', 'Atru.chr4.2232' => 'acertr', 'Atru.chr5.1598' => 'acertr', 'Atru.chr5.1600' => 'acertr', 'Atru.chr5.2188' => 'acertr', 'AUR62008326' => 'cqu', 'AUR62011922' => 'cqu', 'AUR62011924' => 'cqu', 'AUR62021771' => 'cqu', 'AUR62032237' => 'cqu', 'AUR62032240' => 'cqu', 'BcaB01g05572' => 'bca', 'BcaB02g10337' => 'bca', 'BcaB04g19944' => 'bca', 'BcaB05g21548' => 'bca', 'BcaB05g21549' => 'bca', 'BcaB05g23227' => 'bca', 'BcaB06g26256' => 'bca', 'BcaB06g26257' => 'bca', 'BcaB06g28379' => 'bca', 'BcaC02g11159' => 'bca', 'BcaC03g13258' => 'bca', 'BcaC03g13259' => 'bca', 'BcaC05g24456' => 'bca', 'BcaC05g24457' => 'bca', 'BcaC07g36922' => 'bca', 'BcaC07g36923' => 'bca', 'BcaC07g42050' => 'bca', 'BcaC07g42176' => 'bca', 'BcaC07g42195' => 'bca', 'BcaC07g42196' => 'bca', 'BcaNung06674' => 'bca', 'BolC2t06351H' => 'bol', 'BolC2t06352H' => 'bol', 'BolC3t12993H' => 'bol', 'BolC4t23525H' => 'bol', 'BolC4t27475H' => 'bol', 'BolC5t29025H' => 'bol', 'BolC5t29026H' => 'bol', 'BolC8t46898H' => 'bol', 'BolC8t46899H' => 'bol', 'BolC8t52630H' => 'bol', 'BolC8t52765H' => 'bol', 'BolC9t53824H' => 'bol', 'BraA03t09760Z' => 'bra', 'BraA03t10990Z' => 'bra', 'BraA05t20413Z' => 'bra', 'BraA08t35602Z' => 'bra', 'BraA09t36458Z' => 'bra', 'BraA09t42018Z' => 'bra', 'BraA09t42129Z' => 'bra', 'BraA10t42536Z' => 'bra', 'BraA10t42537Z' => 'bra', 'C01p10690' => 'bna', 'C02p03890' => 'bna', 'C02p03900' => 'bna', 'C03p04620' => 'bna', 'C04p19870' => 'bna', 'C04p59670' => 'bna', 'C05p02460' => 'bna', 'C05p02470' => 'bna', 'C08p00980' => 'bna', 'C08p00990' => 'bna', 'C08p51030' => 'bna', 'C08p52360' => 'bna', 'C09p09120' => 'bna', 'CAN.G19.15' => 'can', 'CAN.G251.10' => 'can', 'CAN.G251.9' => 'can', 'CAN.G398.24' => 'can', 'CAN.G410.32' => 'can', 'CAN.G881.2' => 'can', 'CANSAT01G3025' => 'cansat', 'CANSAT78G1211' => 'cansat', 'CANSAT78G1218' => 'cansat', 'CANSAT78G1521' => 'cansat', 'CANSAT78G1670' => 'cansat', 'CARHR003600' => 'chi', 'CARHR003610' => 'chi', 'CARHR006290' => 'chi', 'CARHR006430' => 'chi', 'CARHR124110' => 'chi', 'CARHR203870' => 'chi', 'CARHR203880' => 'chi', 'CARHR203890' => 'chi', 'CARHR276880' => 'chi', 'Carub.0001s0346' => 'cru', 'Carub.0001s0347' => 'cru', 'Carub.0001s0607' => 'cru', 'Carub.0003s2768' => 'cru', 'Carub.0003s2769' => 'cru', 'Carub.0004s1178' => 'cru', 'Carub.0006s0806' => 'cru', 'Carub.0006s0807' => 'cru', 'Carub.0006s0808' => 'cru', 'Carub.0008s0501' => 'cru', 'Carub.0008s2379' => 'cru', 'Ca_08655_v3' => 'car', 'Ca_08922_v3' => 'car', 'Ca_08923_v3' => 'car', 'Ca_09119_v3' => 'car', 'Ca_09703_v3' => 'car', 'Ca_09705_v3' => 'car', 'Ca_09835_v3' => 'car', 'Ca_26403_v3' => 'car', 'Ca_30719_v3' => 'car', 'CBR_g17958' => 'cbr', 'CBR_g40516' => 'cbr', 'Cc00_g05350' => 'ccan', 'Cc01_g18690' => 'ccan', 'Cc03_g04830' => 'ccan', 'Cc03_g04850' => 'ccan', 'CDE02G4469' => 'cde', 'CDE06G0883' => 'cde', 'CDE06G1295' => 'cde', 'CDE06G1390' => 'cde', 'CDE07G0584' => 'cde', 'CDE07G1084' => 'cde', 'CDE08G1259' => 'cde', 'Cfa002341' => 'cfa', 'Cfa024337' => 'cfa', 'Ciclev10004749m.g' => 'ccl', 'Ciclev10006127m.g' => 'ccl', 'Ciclev10019720m.g' => 'ccl', 'Ciclev10022652m.g' => 'ccl', 'CiPaw.01G190400' => 'cil', 'CiPaw.01G190500' => 'cil', 'CiPaw.02G116400' => 'cil', 'CiPaw.02G116500' => 'cil', 'CiPaw.04G183000' => 'cil', 'CiPaw.04G183300' => 'cil', 'ClCG05G004610' => 'cla', 'ClCG05G004620' => 'cla', 'ClCG06G006730' => 'cla', 'ClCG06G006740' => 'cla', 'ClCG11G003690' => 'cla', 'COL.COLO4_08276' => 'col', 'COL.COLO4_08277' => 'col', 'COL.COLO4_15787' => 'col', 'COL.COLO4_15789' => 'col', 'Cpa.g.c44815' => 'cpa', 'Cpa.g.sc52.144' => 'cpa', 'Cpa.g.sc58.46' => 'cpa', 'Cpa.g.sc58.47' => 'cpa', 'Cre08.g360900' => 'cre', 'CsaV3_2G013030' => 'csa', 'CsaV3_2G013050' => 'csa', 'CsaV3_2G015620' => 'csa', 'CsaV3_3G012590' => 'csa', 'CsaV3_3G012600' => 'csa', 'CSS0001641' => 'camsi', 'CSS0008310' => 'camsi', 'CSS0013011' => 'camsi', 'CSS0017147' => 'camsi', 'CSS0022970' => 'camsi', 'CSS0025655' => 'camsi', 'CSS0028665' => 'camsi', 'CSS0029117' => 'camsi', 'CSS0032024' => 'camsi', 'CSS0039681' => 'camsi', 'CSS0046516' => 'camsi', 'CSS0050307' => 'camsi', 'DCAR_005871' => 'dca', 'DCAR_007342' => 'dca', 'DCAR_024228' => 'dca', 'DCAR_027277' => 'dca', 'DCAR_030718' => 'dca', 'Dinv20287' => 'din', 'Dinv22461' => 'din', 'Dinv22464' => 'din', 'Dinv29912' => 'din', 'Dinv29913' => 'din', 'Dinv34580' => 'din', 'Dinv34582' => 'din', 'Dinv44632' => 'din', 'Duzib052G0266' => 'dzi', 'Duzib133G0907' => 'dzi', 'Duzib133G1034' => 'dzi', 'Duzib138G0207' => 'dzi', 'Duzib138G0491' => 'dzi', 'Duzib151G0812' => 'dzi', 'Duzib151G1166' => 'dzi', 'Duzib168G0192' => 'dzi', 'Duzib211G0077' => 'dzi', 'Duzib212G0429' => 'dzi', 'Duzib212G0472' => 'dzi', 'ECA233G2617' => 'eca', 'ECA236G4188' => 'eca', 'ECA240G0936' => 'eca', 'ECA240G1129' => 'eca', 'ECA247G0623' => 'eca', 'EL10Ac5g10451' => 'bvu', 'EL10Ac5g10453' => 'bvu', 'EL10Ac5g10894' => 'bvu', 'Eucgr.H00192' => 'egr', 'Eucgr.H00193' => 'egr', 'Eucgr.H00194' => 'egr', 'Eucgr.J01562' => 'egr', 'Eucgr.K03301' => 'egr', 'FAN02G0632' => 'fan', 'FAN05G5378' => 'fan', 'FAN09G3247' => 'fan', 'FAN12G0435' => 'fan', 'FAN12G2426' => 'fan', 'FAN14G1707' => 'fan', 'FAN14G4725' => 'fan', 'FAN15G2071' => 'fan', 'FAN17G3065' => 'fan', 'FAN19G1376' => 'fan', 'FAN20G0354' => 'fan', 'FAN20G2429' => 'fan', 'FAN20G2658' => 'fan', 'FAN24G2343' => 'fan', 'FAN27G2362' => 'fan', 'FAN28G1765' => 'fan', 'FvH4_1g16020' => 'fve', 'FvH4_2g04890' => 'fve', 'FvH4_2g22270' => 'fve', 'FvH4_4g02630' => 'fve', 'FvH4_4g02640' => 'fve', 'FvH4_6g02650' => 'fve', 'Glyma.02G140600' => 'gma', 'Glyma.03G159900' => 'gma', 'Glyma.05G234800' => 'gma', 'Glyma.07G269600' => 'gma', 'Glyma.08G042300' => 'gma', 'Glyma.10G033500' => 'gma', 'Glyma.10G185200' => 'gma', 'Glyma.17G004300' => 'gma', 'Glyma.19G161900' => 'gma', 'Glyma.20G205100' => 'gma', 'Glyma.20G205200' => 'gma', 'Gohir.A01G139101' => 'ghi', 'Gohir.A02G035600' => 'ghi', 'Gohir.A02G117901' => 'ghi', 'Gohir.A07G210100' => 'ghi', 'Gohir.A07G210200' => 'ghi', 'Gohir.A08G061100' => 'ghi', 'Gohir.A09G223000' => 'ghi', 'Gohir.A09G223100' => 'ghi', 'Gohir.A10G113900' => 'ghi', 'Gohir.A10G114000' => 'ghi', 'Gohir.D02G042300' => 'ghi', 'Gohir.D07G216100' => 'ghi', 'Gohir.D07G216200' => 'ghi', 'Gohir.D08G070400' => 'ghi', 'Gohir.D09G225000' => 'ghi', 'Gohir.D09G225100' => 'ghi', 'Gohir.D10G152300' => 'ghi', 'Gohir.D10G153200' => 'ghi', 'Gohir.D11G133701' => 'ghi', 'Gorai.004G074100' => 'gra', 'Gorai.005G046800' => 'gra', 'Gorai.006G246500' => 'gra', 'Gorai.006G246600' => 'gra', 'Gorai.007G142900' => 'gra', 'Gorai.011G171000' => 'gra', 'Gorai.011G171100' => 'gra', 'Gorai.013G104300' => 'gra', 'Gorai.013G104400' => 'gra', 'GSVIVG01000754001' => 'vvi', 'GSVIVG01000756001' => 'vvi', 'GSVIVG01010903001' => 'vvi', 'GSVIVG01017623001' => 'vvi', 'GSVIVG01018113001' => 'vvi', 'GSVIVG01018116001' => 'vvi', 'GSVIVG01018118001' => 'vvi', 'HanXRQChr03g0076211' => 'han', 'HanXRQChr03g0092431' => 'han', 'HanXRQChr03g0092441' => 'han', 'HanXRQChr03g0092591' => 'han', 'HanXRQChr03g0092671' => 'han', 'HanXRQChr03g0092681' => 'han', 'HanXRQChr03g0092691' => 'han', 'HanXRQChr03g0092701' => 'han', 'HanXRQChr03g0092721' => 'han', 'HanXRQChr03g0092731' => 'han', 'HanXRQChr04g0113681' => 'han', 'HanXRQChr10g0281371' => 'han', 'HanXRQChr11g0337141' => 'han', 'HanXRQChr13g0424521' => 'han', 'HanXRQChr13g0424531' => 'han', 'HanXRQChr13g0424541' => 'han', 'HanXRQChr16g0498221' => 'han', 'Haze_04377' => 'cav', 'Haze_11298' => 'cav', 'Haze_24547' => 'cav', 'Haze_24550' => 'cav', 'Haze_26587' => 'cav', 'Hma1.2p1_0650F.1_g195410' => 'hma', 'Hma1.2p1_0893F.1_g233470' => 'hma', 'HPP92_006508' => 'vpl', 'HPP92_024780' => 'vpl', 'Hund02688' => 'sun', 'Hund09380' => 'sun', 'Hund09381' => 'sun', 'Hund09832' => 'sun', 'Hund09833' => 'sun', 'Hund11351' => 'sun', 'Hund11513' => 'sun', 'Lalb_Chr06g0162591' => 'lal', 'Lalb_Chr06g0162601' => 'lal', 'Lalb_Chr06g0169321' => 'lal', 'Lalb_Chr09g0330951' => 'lal', 'Lalb_Chr16g0387631' => 'lal', 'Lalb_Chr21g0306241' => 'lal', 'Lalb_Chr25g0290051' => 'lal', 'Lalb_Chr25g0290061' => 'lal', 'Lalb_Chr25g0290071' => 'lal', 'Lj1g0003876' => 'lja', 'Lj1P1207T36' => 'lonja', 'Lj2C1156G12' => 'lonja', 'Lj3A793G39' => 'lonja', 'Lj3C580G2' => 'lonja', 'Lj3C780G2' => 'lonja', 'Lj3C780T4' => 'lonja', 'Lj3C793G9' => 'lonja', 'Lj4g0012960' => 'lja', 'Lj5g0021252' => 'lja', 'Lj5g0021484' => 'lja', 'Lj5g0024528' => 'lja', 'Lj6A399T12' => 'lonja', 'Lj6A656G65' => 'lonja', 'Lsat_1_v5_gn_3_125500' => 'lsa', 'Lsat_1_v5_gn_3_125540' => 'lsa', 'Lsat_1_v5_gn_5_72701' => 'lsa', 'Lsat_1_v5_gn_8_91560' => 'lsa', 'Lsat_1_v5_gn_9_9640' => 'lsa', 'Manes.01G200600' => 'mes', 'Manes.01G200700' => 'mes', 'Manes.03G168900' => 'mes', 'Manes.03G169000' => 'mes', 'Manes.05G085801' => 'mes', 'Manes.05G086200' => 'mes', 'Manes.15G036700' => 'mes', 'Manes.15G036900' => 'mes', 'Mapoly0004s0172' => 'mpo', 'Mapoly0023s0001' => 'mpo', 'Mapoly0142s0012' => 'mpo', 'MBI01_g32854_MAGBIO' => 'mbi', 'MBI11_g24427_MAGBIO' => 'mbi', 'MBI11_g47319_MAGBIO' => 'mbi', 'MCO01G433' => 'mco', 'MD00G1187800' => 'mdo', 'MD04G1226500' => 'mdo', 'MD05G1203900' => 'mdo', 'MD10G1191100' => 'mdo', 'MD12G1243500' => 'mdo', 'MD13G1207000' => 'mdo', 'MD13G1207100' => 'mdo', 'MD16G1208600' => 'mdo', 'Medtr1g050352' => 'mtr', 'Medtr1g070385' => 'mtr', 'Medtr1g070450' => 'mtr', 'Medtr1g075200' => 'mtr', 'Medtr1g075250' => 'mtr', 'Medtr1g075260' => 'mtr', 'Medtr1g475250' => 'mtr', 'Medtr4g075450' => 'mtr', 'Medtr7g096300' => 'mtr', 'Medtr8g105110' => 'mtr', 'MELO3C006470.2' => 'cme', 'MELO3C006471.2' => 'cme', 'MELO3C020772.2' => 'cme', 'MELO3C026780.2' => 'cme', 'MELO3C026781.2' => 'cme', 'Migut.D00390' => 'egut', 'Migut.G00435' => 'egut', 'Migut.G00436' => 'egut', 'Migut.G00718' => 'egut', 'MSTRG.21891' => 'ama', 'MSTRG.26910' => 'ama', 'MSTRG.4099' => 'ama', 'MSTRG.9925' => 'ama', 'Nitab4.5_0000165g0010' => 'nta', 'Nitab4.5_0000209g0180' => 'nta', 'Nitab4.5_0000244g0440' => 'nta', 'Nitab4.5_0000525g0220' => 'nta', 'Nitab4.5_0001597g0020' => 'nta', 'Nitab4.5_0001878g0040' => 'nta', 'Nitab4.5_0001878g0060' => 'nta', 'Nitab4.5_0002838g0100' => 'nta', 'Nitab4.5_0002838g0120' => 'nta', 'Nitab4.5_0004798g0030' => 'nta', 'Nitab4.5_0005420g0010' => 'nta', 'Nitab4.5_0005507g0010' => 'nta', 'Nitab4.5_0005574g0020' => 'nta', 'Nitab4.5_0005838g0010' => 'nta', 'Nitab4.5_0010580g0020' => 'nta', 'Nn1g02599' => 'nnu', 'Nn1g02608' => 'nnu', 'Nn3g17742' => 'nnu', 'Nn3g19534' => 'nnu', 'Nn3g19535' => 'nnu', 'Oeu008790.1' => 'oeu', 'Oeu008792.1' => 'oeu', 'Oeu032590.1' => 'oeu', 'Oeu035349.1' => 'oeu', 'Oeu049791.1' => 'oeu', 'Os01g0774500' => 'osa', 'Os03g0628800' => 'osa', 'Os03g0798600' => 'osa', 'Os05g0508800' => 'osa', 'Peaxi162Scf00036g02018' => 'pax', 'Peaxi162Scf00578g00032' => 'pax', 'Peaxi162Scf00578g00317' => 'pax', 'Peaxi162Scf00785g00114' => 'pax', 'Peaxi162Scf00813g00119' => 'pax', 'Peaxi162Scf00906g00227' => 'pax', 'PGR004G0875' => 'pgr', 'PGR004G2424' => 'pgr', 'PGR031G1239' => 'pgr', 'PGR031G2474' => 'pgr', 'PGR044G0423' => 'pgr', 'PGSC0003DMG400001128' => 'stu', 'PGSC0003DMG400007336' => 'stu', 'PGSC0003DMG400016318' => 'stu', 'PGSC0003DMG400016319' => 'stu', 'PGSC0003DMG400018074' => 'stu', 'Phvul.001G157700' => 'pvu', 'Phvul.002G148550' => 'pvu', 'Phvul.002G320200' => 'pvu', 'Phvul.003G089200' => 'pvu', 'Phvul.007G126000' => 'pvu', 'Phvul.007G126100' => 'pvu', 'Phvul.007G178000' => 'pvu', 'Phvul.007G178200' => 'pvu', 'Potri.002G043000' => 'ptr', 'Potri.002G043200' => 'ptr', 'Potri.003G123750' => 'ptr', 'Potri.005G055401' => 'ptr', 'Potri.005G219700' => 'ptr', 'Potri.005G220000' => 'ptr', 'Potri.008G161901' => 'ptr', 'Potri.008G162000' => 'ptr', 'Potri.008G162400' => 'ptr', 'Potri.010G076900' => 'ptr', 'Pp3c12_9180' => 'ppa', 'Pp3c13_19770' => 'ppa', 'Pp3c14_22950' => 'ppa', 'Pp3c16_12160' => 'ppa', 'Pp3c27_7820' => 'ppa', 'Pp3c2_3490' => 'ppa', 'Pp3c3_23700' => 'ppa', 'Pp3c3_36520' => 'ppa', 'Pp3c4_15250' => 'ppa', 'PRCOL_00007002' => 'pco', 'Prupe.1G030600' => 'ppe', 'Prupe.1G030700' => 'ppe', 'Prupe.6G345200' => 'ppe', 'Prupe.8G230300' => 'ppe', 'Prupe.8G230500' => 'ppe', 'Psat3g059600' => 'psa', 'Psat5g200920' => 'psa', 'Psat6g056440' => 'psa', 'Psat6g057360' => 'psa', 'Psat6g134120' => 'psa', 'Psat6g134160' => 'psa', 'Psat7g008640' => 'psa', 'Psat7g185240' => 'psa', 'PSO017G1330' => 'pso', 'PSO063G6097' => 'pso', 'PSO170G0835' => 'pso', 'PSO170G2499' => 'pso', 'PSO210G5058' => 'pso', 'PSO210G6154' => 'pso', 'PSO585G0031' => 'pso', 'PSO832G0264' => 'pso', 'PSO832G4288' => 'pso', 'QL03p027355' => 'qlo', 'QL03p027430' => 'qlo', 'QL04p081380' => 'qlo', 'QL06p015642' => 'qlo', 'QL06p015650' => 'qlo', 'QL06p015686' => 'qlo', 'QL12p042927' => 'qlo', 'QL93p1863_0035' => 'qlo', 'RcHm_v2.0_Chr3g0450581' => 'rch', 'RcHm_v2.0_Chr4g0390371' => 'rch', 'RcHm_v2.0_Chr4g0390381' => 'rch', 'RcHm_v2.0_Chr4g0390491' => 'rch', 'RcHm_v2.0_Chr4g0390501' => 'rch', 'RcHm_v2.0_Chr6g0289231' => 'rch', 'Rhsim04G0190400' => 'rsi', 'Rhsim04G0190500' => 'rsi', 'Rhsim04G0190600' => 'rsi', 'Rhsim13G0031400' => 'rsi', 'Rhsim13G0165600' => 'rsi', 'RhsimUnG0114600' => 'rsi', 'RhsimUnG0114700' => 'rsi', 'Sabra02G0034800' => 'sbr', 'Sabra02G0035100' => 'sbr', 'Sabra05G0168600' => 'sbr', 'Sabra05G0168800' => 'sbr', 'Sabra08G0123700' => 'sbr', 'Sabra10G0031900' => 'sbr', 'Sabra13G0039000' => 'sbr', 'SalBow2G0782' => 'sbo', 'SalBow2G1403' => 'sbo', 'SalBow4G0074' => 'sbo', 'SalBow4G2635' => 'sbo', 'SalBow5G3010' => 'sbo', 'Sc05g0000870' => 'sci', 'Sc05g0000890' => 'sci', 'Sc13g0005000' => 'sci', 'Sc13g0005030' => 'sci', 'Sc19g0003790' => 'sci', 'Sc19g0003800' => 'sci', 'Sed0003467' => 'sed', 'Sed0009355' => 'sed', 'Sed0009894' => 'sed', 'Sed0011972' => 'sed', 'Sed0021483' => 'sed', 'Sed0021750' => 'sed', 'Sed0026279' => 'sed', 'SEGI_05312' => 'sgi', 'SEGI_10112' => 'sgi', 'SEGI_15835' => 'sgi', 'SEGI_30386' => 'sgi', 'SEGI_34122' => 'sgi', 'SEGI_35063' => 'sgi', 'SGA_v2.0_scaffold101G29794' => 'sas', 'SGA_v2.0_scaffold1G00573' => 'sas', 'SGA_v2.0_scaffold79G25637' => 'sas', 'SGA_v2.0_scaffold88G27283' => 'sas', 'SGA_v2.0_scaffold88G27285' => 'sas', 'SGA_v2.0_scaffold88G27331' => 'sas', 'SHI09937' => 'shi', 'SMO119G0302' => 'smo', 'SMO137G0231' => 'smo', 'SMO367G1151' => 'smo', 'Solyc02g082000.3' => 'sly', 'Solyc06g031670.3' => 'sly', 'Solyc06g053810.3' => 'sly', 'Solyc07g025457.1' => 'sly', 'Solyc08g059740.1' => 'sly', 'Solyc08g059750.3' => 'sly', 'Solyc09g083370.3' => 'sly', 'Solyc12g038950.3' => 'sly', 'Sopen02g026630' => 'spe', 'Sopen06g018930' => 'spe', 'Sopen06g018940' => 'spe', 'Sopen08g009460' => 'spe', 'Sopen09g032290' => 'spe', 'Sp1g03080' => 'spa', 'Sp1g03090' => 'spa', 'Sp1g05480' => 'spa', 'Sp2g07860' => 'spa', 'Sp2g08430' => 'spa', 'Sp2g08440' => 'spa', 'Sp2g26200' => 'spa', 'Sp4g13170' => 'spa', 'Sp6g33840' => 'spa', 'SpUn1204_0010' => 'spa', 'TAR365G0908' => 'tar', 'TAR381G1270' => 'tar', 'TAR381G1651' => 'tar', 'TAR625G1131' => 'tar', 'TAR633G0962' => 'tar', 'TAR633G1729' => 'tar', 'TAR633G1864' => 'tar', 'TAR636G0221' => 'tar', 'TAR636G0314' => 'tar', 'TAR636G3202' => 'tar', 'THA.LOC104800805' => 'tha', 'THA.LOC104801096' => 'tha', 'THA.LOC104801555' => 'tha', 'THA.LOC104808491' => 'tha', 'THA.LOC104808595' => 'tha', 'THA.LOC104815985' => 'tha', 'THA.LOC104822250' => 'tha', 'THA.LOC104826071' => 'tha', 'Thecc.01G265200' => 'tca', 'Thecc.01G265300' => 'tca', 'Thecc.01G265700' => 'tca', 'Thecc.03G109100' => 'tca', 'Thecc.04G245900' => 'tca', 'Thecc.04G246000' => 'tca', 'Thhalv10003334m.g' => 'esa', 'Thhalv10005508m.g' => 'esa', 'Thhalv10005643m.g' => 'esa', 'Thhalv10007316m.g' => 'esa', 'Thhalv10009006m.g' => 'esa', 'Thhalv10009309m.g' => 'esa', 'Thhalv10014917m.g' => 'esa', 'Thhalv10014919m.g' => 'esa', 'Thhalv10015393m.g' => 'esa', 'Thhalv10016515m.g' => 'esa', 'Thhalv10029242m.g' => 'esa', 'TPR.G16654' => 'tpr', 'TPR.G20589' => 'tpr', 'TPR.G23029' => 'tpr', 'TPR.G27731' => 'tpr', 'TPR.G28889' => 'tpr', 'TPR.G28899' => 'tpr', 'TPR.G30846' => 'tpr', 'TPR.G5452' => 'tpr', 'TPR.G5713' => 'tpr', 'TPR.G9046' => 'tpr', 'TPR.G9061' => 'tpr', 'TWI09G1075' => 'twi', 'TWI12G0806' => 'twi', 'TWI18G0108' => 'twi', 'TWI53G1361' => 'twi', 'TWI73G0185' => 'twi', 'TWI73G0427' => 'twi', 'unitig_37.g12001' => 'ugi', 'unitig_747.g21660' => 'ugi', 'unitig_748.g7232' => 'ugi', 'unitig_748.g7315' => 'ugi', 'unitig_85.g27262' => 'ugi', 'unitig_92.g28220' => 'ugi', 'vmacro02632' => 'vma', 'vmacro08410' => 'vma', 'vmacro08411' => 'vma', 'vmacro15407' => 'vma', 'VMungo0251G3619' => 'vmu', 'VMungo0720G1204' => 'vmu', 'VMungo0720G1918' => 'vmu', 'VMungo0720G2387' => 'vmu', 'VMungo0720G2961' => 'vmu', 'VMungo1215G2154' => 'vmu', 'VMungo1383G2411' => 'vmu', 'Zm00001eb051130' => 'zma', 'Zm00001eb116830' => 'zma', 'Zm00001eb116850' => 'zma', 'Zm00001eb151740' => 'zma', 'Zm00001eb292360' => 'zma', 'Zm00001eb301640' => 'zma' ) $gf_id = 'HOM05D000856' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000856' ) $data_identifier = 'HOM05D000856' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 13, 'ath' => (int) 10, 'atr' => (int) 1, 'acertr' => (int) 8, 'cqu' => (int) 6, 'bca' => (int) 21, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 11, 'car' => (int) 9, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 8, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 5, 'fan' => (int) 16, 'fve' => (int) 6, 'gma' => (int) 11, 'ghi' => (int) 19, 'gra' => (int) 9, 'vvi' => (int) 7, 'han' => (int) 17, 'cav' => (int) 5, 'hma' => (int) 2, 'vpl' => (int) 2, 'sun' => (int) 7, 'lal' => (int) 9, 'lja' => (int) 5, 'lonja' => (int) 9, 'lsa' => (int) 5, 'mes' => (int) 8, 'mpo' => (int) 3, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 10, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 15, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 9, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 9, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 6, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 5, 'spa' => (int) 10, 'tar' => (int) 10, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 11, 'tpr' => (int) 11, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 4, 'vmu' => (int) 7, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb301640' $species_info = array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ) $local_species = 'dzi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000856', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p00010' => 'bna', 'A03p04160' => 'bna', 'A03p17160' => 'bna', 'A04p23370' => 'bna', 'A05p14860' => 'bna', 'A08p37020' => 'bna', 'A09p08050' => 'bna', 'A09p66800' => 'bna', 'A09p67940' => 'bna', 'A10p02680' => 'bna', 'A10p05320' => 'bna', 'Aa31LG1G20560' => 'aar', 'Aa31LG1G20610' => 'aar', 'Aa31LG1G7810' => 'aar', 'Aa31LG5G3590' => 'aar', 'Aa31LG5G6140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3819' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4683' => 'aag', 'Actinidia04480' => 'ach', 'Actinidia05466' => 'ach', 'Actinidia08445' => 'ach', 'Actinidia21170' => 'ach', 'Actinidia24812' => 'ach', 'Actinidia24951' => 'ach', 'Actinidia40088' => 'ach', 'Ah.02g111660' => 'amhyb', 'Ah.11g048900' => 'amhyb', 'Ah.11g049910' => 'amhyb', 'AL1G13870' => 'aly', 'AL1G13880' => 'aly', 'AL1G16760' => 'aly', 'AL390U10020' => 'aly', 'AL4G25520' => 'aly', 'AL6G19890' => 'aly', 'AL6G19900' => 'aly', 'AL6G19910' => 'aly', 'AL8G40100' => 'aly', 'Aqoxy2G03562' => 'aox', 'Aqoxy5G00316' => 'aox', 'Aqoxy5G00926' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1628KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1H403S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2FU6SJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.882I6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8YRY2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YN1SN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AF70II' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZA8L1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F916KL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHRD8H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KTZ8QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S22EMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8M29T' => 'arhy', 'AT1G04270' => 'ath', 'AT1G04280' => 'ath', 'AT1G06750' => 'ath', 'AT1G33850' => 'ath', 'AT2G30630' => 'ath', 'AT5G09490' => 'ath', 'AT5G09500' => 'ath', 'AT5G09510' => 'ath', 'AT5G43640' => 'ath', 'AT5G63070' => 'ath', 'ATR0605G315' => 'atr', 'Atru.chr11.175' => 'acertr', 'Atru.chr11.653' => 'acertr', 'Atru.chr3.1616' => 'acertr', 'Atru.chr4.2230' => 'acertr', 'Atru.chr4.2232' => 'acertr', 'Atru.chr5.1598' => 'acertr', 'Atru.chr5.1600' => 'acertr', 'Atru.chr5.2188' => 'acertr', 'AUR62008326' => 'cqu', 'AUR62011922' => 'cqu', 'AUR62011924' => 'cqu', 'AUR62021771' => 'cqu', 'AUR62032237' => 'cqu', 'AUR62032240' => 'cqu', 'BcaB01g05572' => 'bca', 'BcaB02g10337' => 'bca', 'BcaB04g19944' => 'bca', 'BcaB05g21548' => 'bca', 'BcaB05g21549' => 'bca', 'BcaB05g23227' => 'bca', 'BcaB06g26256' => 'bca', 'BcaB06g26257' => 'bca', 'BcaB06g28379' => 'bca', 'BcaC02g11159' => 'bca', 'BcaC03g13258' => 'bca', 'BcaC03g13259' => 'bca', 'BcaC05g24456' => 'bca', 'BcaC05g24457' => 'bca', 'BcaC07g36922' => 'bca', 'BcaC07g36923' => 'bca', 'BcaC07g42050' => 'bca', 'BcaC07g42176' => 'bca', 'BcaC07g42195' => 'bca', 'BcaC07g42196' => 'bca', 'BcaNung06674' => 'bca', 'BolC2t06351H' => 'bol', 'BolC2t06352H' => 'bol', 'BolC3t12993H' => 'bol', 'BolC4t23525H' => 'bol', 'BolC4t27475H' => 'bol', 'BolC5t29025H' => 'bol', 'BolC5t29026H' => 'bol', 'BolC8t46898H' => 'bol', 'BolC8t46899H' => 'bol', 'BolC8t52630H' => 'bol', 'BolC8t52765H' => 'bol', 'BolC9t53824H' => 'bol', 'BraA03t09760Z' => 'bra', 'BraA03t10990Z' => 'bra', 'BraA05t20413Z' => 'bra', 'BraA08t35602Z' => 'bra', 'BraA09t36458Z' => 'bra', 'BraA09t42018Z' => 'bra', 'BraA09t42129Z' => 'bra', 'BraA10t42536Z' => 'bra', 'BraA10t42537Z' => 'bra', 'C01p10690' => 'bna', 'C02p03890' => 'bna', 'C02p03900' => 'bna', 'C03p04620' => 'bna', 'C04p19870' => 'bna', 'C04p59670' => 'bna', 'C05p02460' => 'bna', 'C05p02470' => 'bna', 'C08p00980' => 'bna', 'C08p00990' => 'bna', 'C08p51030' => 'bna', 'C08p52360' => 'bna', 'C09p09120' => 'bna', 'CAN.G19.15' => 'can', 'CAN.G251.10' => 'can', 'CAN.G251.9' => 'can', 'CAN.G398.24' => 'can', 'CAN.G410.32' => 'can', 'CAN.G881.2' => 'can', 'CANSAT01G3025' => 'cansat', 'CANSAT78G1211' => 'cansat', 'CANSAT78G1218' => 'cansat', 'CANSAT78G1521' => 'cansat', 'CANSAT78G1670' => 'cansat', 'CARHR003600' => 'chi', 'CARHR003610' => 'chi', 'CARHR006290' => 'chi', 'CARHR006430' => 'chi', 'CARHR124110' => 'chi', 'CARHR203870' => 'chi', 'CARHR203880' => 'chi', 'CARHR203890' => 'chi', 'CARHR276880' => 'chi', 'Carub.0001s0346' => 'cru', 'Carub.0001s0347' => 'cru', 'Carub.0001s0607' => 'cru', 'Carub.0003s2768' => 'cru', 'Carub.0003s2769' => 'cru', 'Carub.0004s1178' => 'cru', 'Carub.0006s0806' => 'cru', 'Carub.0006s0807' => 'cru', 'Carub.0006s0808' => 'cru', 'Carub.0008s0501' => 'cru', 'Carub.0008s2379' => 'cru', 'Ca_08655_v3' => 'car', 'Ca_08922_v3' => 'car', 'Ca_08923_v3' => 'car', 'Ca_09119_v3' => 'car', 'Ca_09703_v3' => 'car', 'Ca_09705_v3' => 'car', 'Ca_09835_v3' => 'car', 'Ca_26403_v3' => 'car', 'Ca_30719_v3' => 'car', 'CBR_g17958' => 'cbr', 'CBR_g40516' => 'cbr', 'Cc00_g05350' => 'ccan', 'Cc01_g18690' => 'ccan', 'Cc03_g04830' => 'ccan', 'Cc03_g04850' => 'ccan', 'CDE02G4469' => 'cde', 'CDE06G0883' => 'cde', 'CDE06G1295' => 'cde', 'CDE06G1390' => 'cde', 'CDE07G0584' => 'cde', 'CDE07G1084' => 'cde', 'CDE08G1259' => 'cde', 'Cfa002341' => 'cfa', 'Cfa024337' => 'cfa', 'Ciclev10004749m.g' => 'ccl', 'Ciclev10006127m.g' => 'ccl', 'Ciclev10019720m.g' => 'ccl', 'Ciclev10022652m.g' => 'ccl', 'CiPaw.01G190400' => 'cil', 'CiPaw.01G190500' => 'cil', 'CiPaw.02G116400' => 'cil', 'CiPaw.02G116500' => 'cil', 'CiPaw.04G183000' => 'cil', 'CiPaw.04G183300' => 'cil', 'ClCG05G004610' => 'cla', 'ClCG05G004620' => 'cla', 'ClCG06G006730' => 'cla', 'ClCG06G006740' => 'cla', 'ClCG11G003690' => 'cla', 'COL.COLO4_08276' => 'col', 'COL.COLO4_08277' => 'col', 'COL.COLO4_15787' => 'col', 'COL.COLO4_15789' => 'col', 'Cpa.g.c44815' => 'cpa', 'Cpa.g.sc52.144' => 'cpa', 'Cpa.g.sc58.46' => 'cpa', 'Cpa.g.sc58.47' => 'cpa', 'Cre08.g360900' => 'cre', 'CsaV3_2G013030' => 'csa', 'CsaV3_2G013050' => 'csa', 'CsaV3_2G015620' => 'csa', 'CsaV3_3G012590' => 'csa', 'CsaV3_3G012600' => 'csa', 'CSS0001641' => 'camsi', 'CSS0008310' => 'camsi', 'CSS0013011' => 'camsi', 'CSS0017147' => 'camsi', 'CSS0022970' => 'camsi', 'CSS0025655' => 'camsi', 'CSS0028665' => 'camsi', 'CSS0029117' => 'camsi', 'CSS0032024' => 'camsi', 'CSS0039681' => 'camsi', 'CSS0046516' => 'camsi', 'CSS0050307' => 'camsi', 'DCAR_005871' => 'dca', 'DCAR_007342' => 'dca', 'DCAR_024228' => 'dca', 'DCAR_027277' => 'dca', 'DCAR_030718' => 'dca', 'Dinv20287' => 'din', 'Dinv22461' => 'din', 'Dinv22464' => 'din', 'Dinv29912' => 'din', 'Dinv29913' => 'din', 'Dinv34580' => 'din', 'Dinv34582' => 'din', 'Dinv44632' => 'din', 'Duzib052G0266' => 'dzi', 'Duzib133G0907' => 'dzi', 'Duzib133G1034' => 'dzi', 'Duzib138G0207' => 'dzi', 'Duzib138G0491' => 'dzi', 'Duzib151G0812' => 'dzi', 'Duzib151G1166' => 'dzi', 'Duzib168G0192' => 'dzi', 'Duzib211G0077' => 'dzi', 'Duzib212G0429' => 'dzi', 'Duzib212G0472' => 'dzi', 'ECA233G2617' => 'eca', 'ECA236G4188' => 'eca', 'ECA240G0936' => 'eca', 'ECA240G1129' => 'eca', 'ECA247G0623' => 'eca', 'EL10Ac5g10451' => 'bvu', 'EL10Ac5g10453' => 'bvu', 'EL10Ac5g10894' => 'bvu', 'Eucgr.H00192' => 'egr', 'Eucgr.H00193' => 'egr', 'Eucgr.H00194' => 'egr', 'Eucgr.J01562' => 'egr', 'Eucgr.K03301' => 'egr', 'FAN02G0632' => 'fan', 'FAN05G5378' => 'fan', 'FAN09G3247' => 'fan', 'FAN12G0435' => 'fan', 'FAN12G2426' => 'fan', 'FAN14G1707' => 'fan', 'FAN14G4725' => 'fan', 'FAN15G2071' => 'fan', 'FAN17G3065' => 'fan', 'FAN19G1376' => 'fan', 'FAN20G0354' => 'fan', 'FAN20G2429' => 'fan', 'FAN20G2658' => 'fan', 'FAN24G2343' => 'fan', 'FAN27G2362' => 'fan', 'FAN28G1765' => 'fan', 'FvH4_1g16020' => 'fve', 'FvH4_2g04890' => 'fve', 'FvH4_2g22270' => 'fve', 'FvH4_4g02630' => 'fve', 'FvH4_4g02640' => 'fve', 'FvH4_6g02650' => 'fve', 'Glyma.02G140600' => 'gma', 'Glyma.03G159900' => 'gma', 'Glyma.05G234800' => 'gma', 'Glyma.07G269600' => 'gma', 'Glyma.08G042300' => 'gma', 'Glyma.10G033500' => 'gma', 'Glyma.10G185200' => 'gma', 'Glyma.17G004300' => 'gma', 'Glyma.19G161900' => 'gma', 'Glyma.20G205100' => 'gma', 'Glyma.20G205200' => 'gma', 'Gohir.A01G139101' => 'ghi', 'Gohir.A02G035600' => 'ghi', 'Gohir.A02G117901' => 'ghi', 'Gohir.A07G210100' => 'ghi', 'Gohir.A07G210200' => 'ghi', 'Gohir.A08G061100' => 'ghi', 'Gohir.A09G223000' => 'ghi', 'Gohir.A09G223100' => 'ghi', 'Gohir.A10G113900' => 'ghi', 'Gohir.A10G114000' => 'ghi', 'Gohir.D02G042300' => 'ghi', 'Gohir.D07G216100' => 'ghi', 'Gohir.D07G216200' => 'ghi', 'Gohir.D08G070400' => 'ghi', 'Gohir.D09G225000' => 'ghi', 'Gohir.D09G225100' => 'ghi', 'Gohir.D10G152300' => 'ghi', 'Gohir.D10G153200' => 'ghi', 'Gohir.D11G133701' => 'ghi', 'Gorai.004G074100' => 'gra', 'Gorai.005G046800' => 'gra', 'Gorai.006G246500' => 'gra', 'Gorai.006G246600' => 'gra', 'Gorai.007G142900' => 'gra', 'Gorai.011G171000' => 'gra', 'Gorai.011G171100' => 'gra', 'Gorai.013G104300' => 'gra', 'Gorai.013G104400' => 'gra', 'GSVIVG01000754001' => 'vvi', 'GSVIVG01000756001' => 'vvi', 'GSVIVG01010903001' => 'vvi', 'GSVIVG01017623001' => 'vvi', 'GSVIVG01018113001' => 'vvi', 'GSVIVG01018116001' => 'vvi', 'GSVIVG01018118001' => 'vvi', 'HanXRQChr03g0076211' => 'han', 'HanXRQChr03g0092431' => 'han', 'HanXRQChr03g0092441' => 'han', 'HanXRQChr03g0092591' => 'han', 'HanXRQChr03g0092671' => 'han', 'HanXRQChr03g0092681' => 'han', 'HanXRQChr03g0092691' => 'han', 'HanXRQChr03g0092701' => 'han', 'HanXRQChr03g0092721' => 'han', 'HanXRQChr03g0092731' => 'han', 'HanXRQChr04g0113681' => 'han', 'HanXRQChr10g0281371' => 'han', 'HanXRQChr11g0337141' => 'han', 'HanXRQChr13g0424521' => 'han', 'HanXRQChr13g0424531' => 'han', 'HanXRQChr13g0424541' => 'han', 'HanXRQChr16g0498221' => 'han', 'Haze_04377' => 'cav', 'Haze_11298' => 'cav', 'Haze_24547' => 'cav', 'Haze_24550' => 'cav', 'Haze_26587' => 'cav', 'Hma1.2p1_0650F.1_g195410' => 'hma', 'Hma1.2p1_0893F.1_g233470' => 'hma', 'HPP92_006508' => 'vpl', 'HPP92_024780' => 'vpl', 'Hund02688' => 'sun', 'Hund09380' => 'sun', 'Hund09381' => 'sun', 'Hund09832' => 'sun', 'Hund09833' => 'sun', 'Hund11351' => 'sun', 'Hund11513' => 'sun', 'Lalb_Chr06g0162591' => 'lal', 'Lalb_Chr06g0162601' => 'lal', 'Lalb_Chr06g0169321' => 'lal', 'Lalb_Chr09g0330951' => 'lal', 'Lalb_Chr16g0387631' => 'lal', 'Lalb_Chr21g0306241' => 'lal', 'Lalb_Chr25g0290051' => 'lal', 'Lalb_Chr25g0290061' => 'lal', 'Lalb_Chr25g0290071' => 'lal', 'Lj1g0003876' => 'lja', 'Lj1P1207T36' => 'lonja', 'Lj2C1156G12' => 'lonja', 'Lj3A793G39' => 'lonja', 'Lj3C580G2' => 'lonja', 'Lj3C780G2' => 'lonja', 'Lj3C780T4' => 'lonja', 'Lj3C793G9' => 'lonja', 'Lj4g0012960' => 'lja', 'Lj5g0021252' => 'lja', 'Lj5g0021484' => 'lja', 'Lj5g0024528' => 'lja', 'Lj6A399T12' => 'lonja', 'Lj6A656G65' => 'lonja', 'Lsat_1_v5_gn_3_125500' => 'lsa', 'Lsat_1_v5_gn_3_125540' => 'lsa', 'Lsat_1_v5_gn_5_72701' => 'lsa', 'Lsat_1_v5_gn_8_91560' => 'lsa', 'Lsat_1_v5_gn_9_9640' => 'lsa', 'Manes.01G200600' => 'mes', 'Manes.01G200700' => 'mes', 'Manes.03G168900' => 'mes', 'Manes.03G169000' => 'mes', 'Manes.05G085801' => 'mes', 'Manes.05G086200' => 'mes', 'Manes.15G036700' => 'mes', 'Manes.15G036900' => 'mes', 'Mapoly0004s0172' => 'mpo', 'Mapoly0023s0001' => 'mpo', 'Mapoly0142s0012' => 'mpo', 'MBI01_g32854_MAGBIO' => 'mbi', 'MBI11_g24427_MAGBIO' => 'mbi', 'MBI11_g47319_MAGBIO' => 'mbi', 'MCO01G433' => 'mco', 'MD00G1187800' => 'mdo', 'MD04G1226500' => 'mdo', 'MD05G1203900' => 'mdo', 'MD10G1191100' => 'mdo', 'MD12G1243500' => 'mdo', 'MD13G1207000' => 'mdo', 'MD13G1207100' => 'mdo', 'MD16G1208600' => 'mdo', 'Medtr1g050352' => 'mtr', 'Medtr1g070385' => 'mtr', 'Medtr1g070450' => 'mtr', 'Medtr1g075200' => 'mtr', 'Medtr1g075250' => 'mtr', 'Medtr1g075260' => 'mtr', 'Medtr1g475250' => 'mtr', 'Medtr4g075450' => 'mtr', 'Medtr7g096300' => 'mtr', 'Medtr8g105110' => 'mtr', 'MELO3C006470.2' => 'cme', 'MELO3C006471.2' => 'cme', 'MELO3C020772.2' => 'cme', 'MELO3C026780.2' => 'cme', 'MELO3C026781.2' => 'cme', 'Migut.D00390' => 'egut', 'Migut.G00435' => 'egut', 'Migut.G00436' => 'egut', 'Migut.G00718' => 'egut', 'MSTRG.21891' => 'ama', 'MSTRG.26910' => 'ama', 'MSTRG.4099' => 'ama', 'MSTRG.9925' => 'ama', 'Nitab4.5_0000165g0010' => 'nta', 'Nitab4.5_0000209g0180' => 'nta', 'Nitab4.5_0000244g0440' => 'nta', 'Nitab4.5_0000525g0220' => 'nta', 'Nitab4.5_0001597g0020' => 'nta', 'Nitab4.5_0001878g0040' => 'nta', 'Nitab4.5_0001878g0060' => 'nta', 'Nitab4.5_0002838g0100' => 'nta', 'Nitab4.5_0002838g0120' => 'nta', 'Nitab4.5_0004798g0030' => 'nta', 'Nitab4.5_0005420g0010' => 'nta', 'Nitab4.5_0005507g0010' => 'nta', 'Nitab4.5_0005574g0020' => 'nta', 'Nitab4.5_0005838g0010' => 'nta', 'Nitab4.5_0010580g0020' => 'nta', 'Nn1g02599' => 'nnu', 'Nn1g02608' => 'nnu', 'Nn3g17742' => 'nnu', 'Nn3g19534' => 'nnu', 'Nn3g19535' => 'nnu', 'Oeu008790.1' => 'oeu', 'Oeu008792.1' => 'oeu', 'Oeu032590.1' => 'oeu', 'Oeu035349.1' => 'oeu', 'Oeu049791.1' => 'oeu', 'Os01g0774500' => 'osa', 'Os03g0628800' => 'osa', 'Os03g0798600' => 'osa', 'Os05g0508800' => 'osa', 'Peaxi162Scf00036g02018' => 'pax', 'Peaxi162Scf00578g00032' => 'pax', 'Peaxi162Scf00578g00317' => 'pax', 'Peaxi162Scf00785g00114' => 'pax', 'Peaxi162Scf00813g00119' => 'pax', 'Peaxi162Scf00906g00227' => 'pax', 'PGR004G0875' => 'pgr', 'PGR004G2424' => 'pgr', 'PGR031G1239' => 'pgr', 'PGR031G2474' => 'pgr', 'PGR044G0423' => 'pgr', 'PGSC0003DMG400001128' => 'stu', 'PGSC0003DMG400007336' => 'stu', 'PGSC0003DMG400016318' => 'stu', 'PGSC0003DMG400016319' => 'stu', 'PGSC0003DMG400018074' => 'stu', 'Phvul.001G157700' => 'pvu', 'Phvul.002G148550' => 'pvu', 'Phvul.002G320200' => 'pvu', 'Phvul.003G089200' => 'pvu', 'Phvul.007G126000' => 'pvu', 'Phvul.007G126100' => 'pvu', 'Phvul.007G178000' => 'pvu', 'Phvul.007G178200' => 'pvu', 'Potri.002G043000' => 'ptr', 'Potri.002G043200' => 'ptr', 'Potri.003G123750' => 'ptr', 'Potri.005G055401' => 'ptr', 'Potri.005G219700' => 'ptr', 'Potri.005G220000' => 'ptr', 'Potri.008G161901' => 'ptr', 'Potri.008G162000' => 'ptr', 'Potri.008G162400' => 'ptr', 'Potri.010G076900' => 'ptr', 'Pp3c12_9180' => 'ppa', 'Pp3c13_19770' => 'ppa', 'Pp3c14_22950' => 'ppa', 'Pp3c16_12160' => 'ppa', 'Pp3c27_7820' => 'ppa', 'Pp3c2_3490' => 'ppa', 'Pp3c3_23700' => 'ppa', 'Pp3c3_36520' => 'ppa', 'Pp3c4_15250' => 'ppa', 'PRCOL_00007002' => 'pco', 'Prupe.1G030600' => 'ppe', 'Prupe.1G030700' => 'ppe', 'Prupe.6G345200' => 'ppe', 'Prupe.8G230300' => 'ppe', 'Prupe.8G230500' => 'ppe', 'Psat3g059600' => 'psa', 'Psat5g200920' => 'psa', 'Psat6g056440' => 'psa', 'Psat6g057360' => 'psa', 'Psat6g134120' => 'psa', 'Psat6g134160' => 'psa', 'Psat7g008640' => 'psa', 'Psat7g185240' => 'psa', 'PSO017G1330' => 'pso', 'PSO063G6097' => 'pso', 'PSO170G0835' => 'pso', 'PSO170G2499' => 'pso', 'PSO210G5058' => 'pso', 'PSO210G6154' => 'pso', 'PSO585G0031' => 'pso', 'PSO832G0264' => 'pso', 'PSO832G4288' => 'pso', 'QL03p027355' => 'qlo', 'QL03p027430' => 'qlo', 'QL04p081380' => 'qlo', 'QL06p015642' => 'qlo', 'QL06p015650' => 'qlo', 'QL06p015686' => 'qlo', 'QL12p042927' => 'qlo', 'QL93p1863_0035' => 'qlo', 'RcHm_v2.0_Chr3g0450581' => 'rch', 'RcHm_v2.0_Chr4g0390371' => 'rch', 'RcHm_v2.0_Chr4g0390381' => 'rch', 'RcHm_v2.0_Chr4g0390491' => 'rch', 'RcHm_v2.0_Chr4g0390501' => 'rch', 'RcHm_v2.0_Chr6g0289231' => 'rch', 'Rhsim04G0190400' => 'rsi', 'Rhsim04G0190500' => 'rsi', 'Rhsim04G0190600' => 'rsi', 'Rhsim13G0031400' => 'rsi', 'Rhsim13G0165600' => 'rsi', 'RhsimUnG0114600' => 'rsi', 'RhsimUnG0114700' => 'rsi', 'Sabra02G0034800' => 'sbr', 'Sabra02G0035100' => 'sbr', 'Sabra05G0168600' => 'sbr', 'Sabra05G0168800' => 'sbr', 'Sabra08G0123700' => 'sbr', 'Sabra10G0031900' => 'sbr', 'Sabra13G0039000' => 'sbr', 'SalBow2G0782' => 'sbo', 'SalBow2G1403' => 'sbo', 'SalBow4G0074' => 'sbo', 'SalBow4G2635' => 'sbo', 'SalBow5G3010' => 'sbo', 'Sc05g0000870' => 'sci', 'Sc05g0000890' => 'sci', 'Sc13g0005000' => 'sci', 'Sc13g0005030' => 'sci', 'Sc19g0003790' => 'sci', 'Sc19g0003800' => 'sci', 'Sed0003467' => 'sed', 'Sed0009355' => 'sed', 'Sed0009894' => 'sed', 'Sed0011972' => 'sed', 'Sed0021483' => 'sed', 'Sed0021750' => 'sed', 'Sed0026279' => 'sed', 'SEGI_05312' => 'sgi', 'SEGI_10112' => 'sgi', 'SEGI_15835' => 'sgi', 'SEGI_30386' => 'sgi', 'SEGI_34122' => 'sgi', 'SEGI_35063' => 'sgi', 'SGA_v2.0_scaffold101G29794' => 'sas', 'SGA_v2.0_scaffold1G00573' => 'sas', 'SGA_v2.0_scaffold79G25637' => 'sas', 'SGA_v2.0_scaffold88G27283' => 'sas', 'SGA_v2.0_scaffold88G27285' => 'sas', 'SGA_v2.0_scaffold88G27331' => 'sas', 'SHI09937' => 'shi', 'SMO119G0302' => 'smo', 'SMO137G0231' => 'smo', 'SMO367G1151' => 'smo', 'Solyc02g082000.3' => 'sly', 'Solyc06g031670.3' => 'sly', 'Solyc06g053810.3' => 'sly', 'Solyc07g025457.1' => 'sly', 'Solyc08g059740.1' => 'sly', 'Solyc08g059750.3' => 'sly', 'Solyc09g083370.3' => 'sly', 'Solyc12g038950.3' => 'sly', 'Sopen02g026630' => 'spe', 'Sopen06g018930' => 'spe', 'Sopen06g018940' => 'spe', 'Sopen08g009460' => 'spe', 'Sopen09g032290' => 'spe', 'Sp1g03080' => 'spa', 'Sp1g03090' => 'spa', 'Sp1g05480' => 'spa', 'Sp2g07860' => 'spa', 'Sp2g08430' => 'spa', 'Sp2g08440' => 'spa', 'Sp2g26200' => 'spa', 'Sp4g13170' => 'spa', 'Sp6g33840' => 'spa', 'SpUn1204_0010' => 'spa', 'TAR365G0908' => 'tar', 'TAR381G1270' => 'tar', 'TAR381G1651' => 'tar', 'TAR625G1131' => 'tar', 'TAR633G0962' => 'tar', 'TAR633G1729' => 'tar', 'TAR633G1864' => 'tar', 'TAR636G0221' => 'tar', 'TAR636G0314' => 'tar', 'TAR636G3202' => 'tar', 'THA.LOC104800805' => 'tha', 'THA.LOC104801096' => 'tha', 'THA.LOC104801555' => 'tha', 'THA.LOC104808491' => 'tha', 'THA.LOC104808595' => 'tha', 'THA.LOC104815985' => 'tha', 'THA.LOC104822250' => 'tha', 'THA.LOC104826071' => 'tha', 'Thecc.01G265200' => 'tca', 'Thecc.01G265300' => 'tca', 'Thecc.01G265700' => 'tca', 'Thecc.03G109100' => 'tca', 'Thecc.04G245900' => 'tca', 'Thecc.04G246000' => 'tca', 'Thhalv10003334m.g' => 'esa', 'Thhalv10005508m.g' => 'esa', 'Thhalv10005643m.g' => 'esa', 'Thhalv10007316m.g' => 'esa', 'Thhalv10009006m.g' => 'esa', 'Thhalv10009309m.g' => 'esa', 'Thhalv10014917m.g' => 'esa', 'Thhalv10014919m.g' => 'esa', 'Thhalv10015393m.g' => 'esa', 'Thhalv10016515m.g' => 'esa', 'Thhalv10029242m.g' => 'esa', 'TPR.G16654' => 'tpr', 'TPR.G20589' => 'tpr', 'TPR.G23029' => 'tpr', 'TPR.G27731' => 'tpr', 'TPR.G28889' => 'tpr', 'TPR.G28899' => 'tpr', 'TPR.G30846' => 'tpr', 'TPR.G5452' => 'tpr', 'TPR.G5713' => 'tpr', 'TPR.G9046' => 'tpr', 'TPR.G9061' => 'tpr', 'TWI09G1075' => 'twi', 'TWI12G0806' => 'twi', 'TWI18G0108' => 'twi', 'TWI53G1361' => 'twi', 'TWI73G0185' => 'twi', 'TWI73G0427' => 'twi', 'unitig_37.g12001' => 'ugi', 'unitig_747.g21660' => 'ugi', 'unitig_748.g7232' => 'ugi', 'unitig_748.g7315' => 'ugi', 'unitig_85.g27262' => 'ugi', 'unitig_92.g28220' => 'ugi', 'vmacro02632' => 'vma', 'vmacro08410' => 'vma', 'vmacro08411' => 'vma', 'vmacro15407' => 'vma', 'VMungo0251G3619' => 'vmu', 'VMungo0720G1204' => 'vmu', 'VMungo0720G1918' => 'vmu', 'VMungo0720G2387' => 'vmu', 'VMungo0720G2961' => 'vmu', 'VMungo1215G2154' => 'vmu', 'VMungo1383G2411' => 'vmu', 'Zm00001eb051130' => 'zma', 'Zm00001eb116830' => 'zma', 'Zm00001eb116850' => 'zma', 'Zm00001eb151740' => 'zma', 'Zm00001eb292360' => 'zma', 'Zm00001eb301640' => 'zma' ), 'gf_id' => 'HOM05D000856', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000856' ), 'data_identifier' => 'HOM05D000856', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000856', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p00010' => 'bna', 'A03p04160' => 'bna', 'A03p17160' => 'bna', 'A04p23370' => 'bna', 'A05p14860' => 'bna', 'A08p37020' => 'bna', 'A09p08050' => 'bna', 'A09p66800' => 'bna', 'A09p67940' => 'bna', 'A10p02680' => 'bna', 'A10p05320' => 'bna', 'Aa31LG1G20560' => 'aar', 'Aa31LG1G20610' => 'aar', 'Aa31LG1G7810' => 'aar', 'Aa31LG5G3590' => 'aar', 'Aa31LG5G6140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3819' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4683' => 'aag', 'Actinidia04480' => 'ach', 'Actinidia05466' => 'ach', 'Actinidia08445' => 'ach', 'Actinidia21170' => 'ach', 'Actinidia24812' => 'ach', 'Actinidia24951' => 'ach', 'Actinidia40088' => 'ach', 'Ah.02g111660' => 'amhyb', 'Ah.11g048900' => 'amhyb', 'Ah.11g049910' => 'amhyb', 'AL1G13870' => 'aly', 'AL1G13880' => 'aly', 'AL1G16760' => 'aly', 'AL390U10020' => 'aly', 'AL4G25520' => 'aly', 'AL6G19890' => 'aly', 'AL6G19900' => 'aly', 'AL6G19910' => 'aly', 'AL8G40100' => 'aly', 'Aqoxy2G03562' => 'aox', 'Aqoxy5G00316' => 'aox', 'Aqoxy5G00926' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1628KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1H403S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2FU6SJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.882I6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8YRY2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YN1SN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AF70II' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZA8L1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F916KL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHRD8H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KTZ8QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S22EMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8M29T' => 'arhy', 'AT1G04270' => 'ath', 'AT1G04280' => 'ath', 'AT1G06750' => 'ath', 'AT1G33850' => 'ath', 'AT2G30630' => 'ath', 'AT5G09490' => 'ath', 'AT5G09500' => 'ath', 'AT5G09510' => 'ath', 'AT5G43640' => 'ath', 'AT5G63070' => 'ath', 'ATR0605G315' => 'atr', 'Atru.chr11.175' => 'acertr', 'Atru.chr11.653' => 'acertr', 'Atru.chr3.1616' => 'acertr', 'Atru.chr4.2230' => 'acertr', 'Atru.chr4.2232' => 'acertr', 'Atru.chr5.1598' => 'acertr', 'Atru.chr5.1600' => 'acertr', 'Atru.chr5.2188' => 'acertr', 'AUR62008326' => 'cqu', 'AUR62011922' => 'cqu', 'AUR62011924' => 'cqu', 'AUR62021771' => 'cqu', 'AUR62032237' => 'cqu', 'AUR62032240' => 'cqu', 'BcaB01g05572' => 'bca', 'BcaB02g10337' => 'bca', 'BcaB04g19944' => 'bca', 'BcaB05g21548' => 'bca', 'BcaB05g21549' => 'bca', 'BcaB05g23227' => 'bca', 'BcaB06g26256' => 'bca', 'BcaB06g26257' => 'bca', 'BcaB06g28379' => 'bca', 'BcaC02g11159' => 'bca', 'BcaC03g13258' => 'bca', 'BcaC03g13259' => 'bca', 'BcaC05g24456' => 'bca', 'BcaC05g24457' => 'bca', 'BcaC07g36922' => 'bca', 'BcaC07g36923' => 'bca', 'BcaC07g42050' => 'bca', 'BcaC07g42176' => 'bca', 'BcaC07g42195' => 'bca', 'BcaC07g42196' => 'bca', 'BcaNung06674' => 'bca', 'BolC2t06351H' => 'bol', 'BolC2t06352H' => 'bol', 'BolC3t12993H' => 'bol', 'BolC4t23525H' => 'bol', 'BolC4t27475H' => 'bol', 'BolC5t29025H' => 'bol', 'BolC5t29026H' => 'bol', 'BolC8t46898H' => 'bol', 'BolC8t46899H' => 'bol', 'BolC8t52630H' => 'bol', 'BolC8t52765H' => 'bol', 'BolC9t53824H' => 'bol', 'BraA03t09760Z' => 'bra', 'BraA03t10990Z' => 'bra', 'BraA05t20413Z' => 'bra', 'BraA08t35602Z' => 'bra', 'BraA09t36458Z' => 'bra', 'BraA09t42018Z' => 'bra', 'BraA09t42129Z' => 'bra', 'BraA10t42536Z' => 'bra', 'BraA10t42537Z' => 'bra', 'C01p10690' => 'bna', 'C02p03890' => 'bna', 'C02p03900' => 'bna', 'C03p04620' => 'bna', 'C04p19870' => 'bna', 'C04p59670' => 'bna', 'C05p02460' => 'bna', 'C05p02470' => 'bna', 'C08p00980' => 'bna', 'C08p00990' => 'bna', 'C08p51030' => 'bna', 'C08p52360' => 'bna', 'C09p09120' => 'bna', 'CAN.G19.15' => 'can', 'CAN.G251.10' => 'can', 'CAN.G251.9' => 'can', 'CAN.G398.24' => 'can', 'CAN.G410.32' => 'can', 'CAN.G881.2' => 'can', 'CANSAT01G3025' => 'cansat', 'CANSAT78G1211' => 'cansat', 'CANSAT78G1218' => 'cansat', 'CANSAT78G1521' => 'cansat', 'CANSAT78G1670' => 'cansat', 'CARHR003600' => 'chi', 'CARHR003610' => 'chi', 'CARHR006290' => 'chi', 'CARHR006430' => 'chi', 'CARHR124110' => 'chi', 'CARHR203870' => 'chi', 'CARHR203880' => 'chi', 'CARHR203890' => 'chi', 'CARHR276880' => 'chi', 'Carub.0001s0346' => 'cru', 'Carub.0001s0347' => 'cru', 'Carub.0001s0607' => 'cru', 'Carub.0003s2768' => 'cru', 'Carub.0003s2769' => 'cru', 'Carub.0004s1178' => 'cru', 'Carub.0006s0806' => 'cru', 'Carub.0006s0807' => 'cru', 'Carub.0006s0808' => 'cru', 'Carub.0008s0501' => 'cru', 'Carub.0008s2379' => 'cru', 'Ca_08655_v3' => 'car', 'Ca_08922_v3' => 'car', 'Ca_08923_v3' => 'car', 'Ca_09119_v3' => 'car', 'Ca_09703_v3' => 'car', 'Ca_09705_v3' => 'car', 'Ca_09835_v3' => 'car', 'Ca_26403_v3' => 'car', 'Ca_30719_v3' => 'car', 'CBR_g17958' => 'cbr', 'CBR_g40516' => 'cbr', 'Cc00_g05350' => 'ccan', 'Cc01_g18690' => 'ccan', 'Cc03_g04830' => 'ccan', 'Cc03_g04850' => 'ccan', 'CDE02G4469' => 'cde', 'CDE06G0883' => 'cde', 'CDE06G1295' => 'cde', 'CDE06G1390' => 'cde', 'CDE07G0584' => 'cde', 'CDE07G1084' => 'cde', 'CDE08G1259' => 'cde', 'Cfa002341' => 'cfa', 'Cfa024337' => 'cfa', 'Ciclev10004749m.g' => 'ccl', 'Ciclev10006127m.g' => 'ccl', 'Ciclev10019720m.g' => 'ccl', 'Ciclev10022652m.g' => 'ccl', 'CiPaw.01G190400' => 'cil', 'CiPaw.01G190500' => 'cil', 'CiPaw.02G116400' => 'cil', 'CiPaw.02G116500' => 'cil', 'CiPaw.04G183000' => 'cil', 'CiPaw.04G183300' => 'cil', 'ClCG05G004610' => 'cla', 'ClCG05G004620' => 'cla', 'ClCG06G006730' => 'cla', 'ClCG06G006740' => 'cla', 'ClCG11G003690' => 'cla', 'COL.COLO4_08276' => 'col', 'COL.COLO4_08277' => 'col', 'COL.COLO4_15787' => 'col', 'COL.COLO4_15789' => 'col', 'Cpa.g.c44815' => 'cpa', 'Cpa.g.sc52.144' => 'cpa', 'Cpa.g.sc58.46' => 'cpa', 'Cpa.g.sc58.47' => 'cpa', 'Cre08.g360900' => 'cre', 'CsaV3_2G013030' => 'csa', 'CsaV3_2G013050' => 'csa', 'CsaV3_2G015620' => 'csa', 'CsaV3_3G012590' => 'csa', 'CsaV3_3G012600' => 'csa', 'CSS0001641' => 'camsi', 'CSS0008310' => 'camsi', 'CSS0013011' => 'camsi', 'CSS0017147' => 'camsi', 'CSS0022970' => 'camsi', 'CSS0025655' => 'camsi', 'CSS0028665' => 'camsi', 'CSS0029117' => 'camsi', 'CSS0032024' => 'camsi', 'CSS0039681' => 'camsi', 'CSS0046516' => 'camsi', 'CSS0050307' => 'camsi', 'DCAR_005871' => 'dca', 'DCAR_007342' => 'dca', 'DCAR_024228' => 'dca', 'DCAR_027277' => 'dca', 'DCAR_030718' => 'dca', 'Dinv20287' => 'din', 'Dinv22461' => 'din', 'Dinv22464' => 'din', 'Dinv29912' => 'din', 'Dinv29913' => 'din', 'Dinv34580' => 'din', 'Dinv34582' => 'din', 'Dinv44632' => 'din', 'Duzib052G0266' => 'dzi', 'Duzib133G0907' => 'dzi', 'Duzib133G1034' => 'dzi', 'Duzib138G0207' => 'dzi', 'Duzib138G0491' => 'dzi', 'Duzib151G0812' => 'dzi', 'Duzib151G1166' => 'dzi', 'Duzib168G0192' => 'dzi', 'Duzib211G0077' => 'dzi', 'Duzib212G0429' => 'dzi', 'Duzib212G0472' => 'dzi', 'ECA233G2617' => 'eca', 'ECA236G4188' => 'eca', 'ECA240G0936' => 'eca', 'ECA240G1129' => 'eca', 'ECA247G0623' => 'eca', 'EL10Ac5g10451' => 'bvu', 'EL10Ac5g10453' => 'bvu', 'EL10Ac5g10894' => 'bvu', 'Eucgr.H00192' => 'egr', 'Eucgr.H00193' => 'egr', 'Eucgr.H00194' => 'egr', 'Eucgr.J01562' => 'egr', 'Eucgr.K03301' => 'egr', 'FAN02G0632' => 'fan', 'FAN05G5378' => 'fan', 'FAN09G3247' => 'fan', 'FAN12G0435' => 'fan', 'FAN12G2426' => 'fan', 'FAN14G1707' => 'fan', 'FAN14G4725' => 'fan', 'FAN15G2071' => 'fan', 'FAN17G3065' => 'fan', 'FAN19G1376' => 'fan', 'FAN20G0354' => 'fan', 'FAN20G2429' => 'fan', 'FAN20G2658' => 'fan', 'FAN24G2343' => 'fan', 'FAN27G2362' => 'fan', 'FAN28G1765' => 'fan', 'FvH4_1g16020' => 'fve', 'FvH4_2g04890' => 'fve', 'FvH4_2g22270' => 'fve', 'FvH4_4g02630' => 'fve', 'FvH4_4g02640' => 'fve', 'FvH4_6g02650' => 'fve', 'Glyma.02G140600' => 'gma', 'Glyma.03G159900' => 'gma', 'Glyma.05G234800' => 'gma', 'Glyma.07G269600' => 'gma', 'Glyma.08G042300' => 'gma', 'Glyma.10G033500' => 'gma', 'Glyma.10G185200' => 'gma', 'Glyma.17G004300' => 'gma', 'Glyma.19G161900' => 'gma', 'Glyma.20G205100' => 'gma', 'Glyma.20G205200' => 'gma', 'Gohir.A01G139101' => 'ghi', 'Gohir.A02G035600' => 'ghi', 'Gohir.A02G117901' => 'ghi', 'Gohir.A07G210100' => 'ghi', 'Gohir.A07G210200' => 'ghi', 'Gohir.A08G061100' => 'ghi', 'Gohir.A09G223000' => 'ghi', 'Gohir.A09G223100' => 'ghi', 'Gohir.A10G113900' => 'ghi', 'Gohir.A10G114000' => 'ghi', 'Gohir.D02G042300' => 'ghi', 'Gohir.D07G216100' => 'ghi', 'Gohir.D07G216200' => 'ghi', 'Gohir.D08G070400' => 'ghi', 'Gohir.D09G225000' => 'ghi', 'Gohir.D09G225100' => 'ghi', 'Gohir.D10G152300' => 'ghi', 'Gohir.D10G153200' => 'ghi', 'Gohir.D11G133701' => 'ghi', 'Gorai.004G074100' => 'gra', 'Gorai.005G046800' => 'gra', 'Gorai.006G246500' => 'gra', 'Gorai.006G246600' => 'gra', 'Gorai.007G142900' => 'gra', 'Gorai.011G171000' => 'gra', 'Gorai.011G171100' => 'gra', 'Gorai.013G104300' => 'gra', 'Gorai.013G104400' => 'gra', 'GSVIVG01000754001' => 'vvi', 'GSVIVG01000756001' => 'vvi', 'GSVIVG01010903001' => 'vvi', 'GSVIVG01017623001' => 'vvi', 'GSVIVG01018113001' => 'vvi', 'GSVIVG01018116001' => 'vvi', 'GSVIVG01018118001' => 'vvi', 'HanXRQChr03g0076211' => 'han', 'HanXRQChr03g0092431' => 'han', 'HanXRQChr03g0092441' => 'han', 'HanXRQChr03g0092591' => 'han', 'HanXRQChr03g0092671' => 'han', 'HanXRQChr03g0092681' => 'han', 'HanXRQChr03g0092691' => 'han', 'HanXRQChr03g0092701' => 'han', 'HanXRQChr03g0092721' => 'han', 'HanXRQChr03g0092731' => 'han', 'HanXRQChr04g0113681' => 'han', 'HanXRQChr10g0281371' => 'han', 'HanXRQChr11g0337141' => 'han', 'HanXRQChr13g0424521' => 'han', 'HanXRQChr13g0424531' => 'han', 'HanXRQChr13g0424541' => 'han', 'HanXRQChr16g0498221' => 'han', 'Haze_04377' => 'cav', 'Haze_11298' => 'cav', 'Haze_24547' => 'cav', 'Haze_24550' => 'cav', 'Haze_26587' => 'cav', 'Hma1.2p1_0650F.1_g195410' => 'hma', 'Hma1.2p1_0893F.1_g233470' => 'hma', 'HPP92_006508' => 'vpl', 'HPP92_024780' => 'vpl', 'Hund02688' => 'sun', 'Hund09380' => 'sun', 'Hund09381' => 'sun', 'Hund09832' => 'sun', 'Hund09833' => 'sun', 'Hund11351' => 'sun', 'Hund11513' => 'sun', 'Lalb_Chr06g0162591' => 'lal', 'Lalb_Chr06g0162601' => 'lal', 'Lalb_Chr06g0169321' => 'lal', 'Lalb_Chr09g0330951' => 'lal', 'Lalb_Chr16g0387631' => 'lal', 'Lalb_Chr21g0306241' => 'lal', 'Lalb_Chr25g0290051' => 'lal', 'Lalb_Chr25g0290061' => 'lal', 'Lalb_Chr25g0290071' => 'lal', 'Lj1g0003876' => 'lja', 'Lj1P1207T36' => 'lonja', 'Lj2C1156G12' => 'lonja', 'Lj3A793G39' => 'lonja', 'Lj3C580G2' => 'lonja', 'Lj3C780G2' => 'lonja', 'Lj3C780T4' => 'lonja', 'Lj3C793G9' => 'lonja', 'Lj4g0012960' => 'lja', 'Lj5g0021252' => 'lja', 'Lj5g0021484' => 'lja', 'Lj5g0024528' => 'lja', 'Lj6A399T12' => 'lonja', 'Lj6A656G65' => 'lonja', 'Lsat_1_v5_gn_3_125500' => 'lsa', 'Lsat_1_v5_gn_3_125540' => 'lsa', 'Lsat_1_v5_gn_5_72701' => 'lsa', 'Lsat_1_v5_gn_8_91560' => 'lsa', 'Lsat_1_v5_gn_9_9640' => 'lsa', 'Manes.01G200600' => 'mes', 'Manes.01G200700' => 'mes', 'Manes.03G168900' => 'mes', 'Manes.03G169000' => 'mes', 'Manes.05G085801' => 'mes', 'Manes.05G086200' => 'mes', 'Manes.15G036700' => 'mes', 'Manes.15G036900' => 'mes', 'Mapoly0004s0172' => 'mpo', 'Mapoly0023s0001' => 'mpo', 'Mapoly0142s0012' => 'mpo', 'MBI01_g32854_MAGBIO' => 'mbi', 'MBI11_g24427_MAGBIO' => 'mbi', 'MBI11_g47319_MAGBIO' => 'mbi', 'MCO01G433' => 'mco', 'MD00G1187800' => 'mdo', 'MD04G1226500' => 'mdo', 'MD05G1203900' => 'mdo', 'MD10G1191100' => 'mdo', 'MD12G1243500' => 'mdo', 'MD13G1207000' => 'mdo', 'MD13G1207100' => 'mdo', 'MD16G1208600' => 'mdo', 'Medtr1g050352' => 'mtr', 'Medtr1g070385' => 'mtr', 'Medtr1g070450' => 'mtr', 'Medtr1g075200' => 'mtr', 'Medtr1g075250' => 'mtr', 'Medtr1g075260' => 'mtr', 'Medtr1g475250' => 'mtr', 'Medtr4g075450' => 'mtr', 'Medtr7g096300' => 'mtr', 'Medtr8g105110' => 'mtr', 'MELO3C006470.2' => 'cme', 'MELO3C006471.2' => 'cme', 'MELO3C020772.2' => 'cme', 'MELO3C026780.2' => 'cme', 'MELO3C026781.2' => 'cme', 'Migut.D00390' => 'egut', 'Migut.G00435' => 'egut', 'Migut.G00436' => 'egut', 'Migut.G00718' => 'egut', 'MSTRG.21891' => 'ama', 'MSTRG.26910' => 'ama', 'MSTRG.4099' => 'ama', 'MSTRG.9925' => 'ama', 'Nitab4.5_0000165g0010' => 'nta', 'Nitab4.5_0000209g0180' => 'nta', 'Nitab4.5_0000244g0440' => 'nta', 'Nitab4.5_0000525g0220' => 'nta', 'Nitab4.5_0001597g0020' => 'nta', 'Nitab4.5_0001878g0040' => 'nta', 'Nitab4.5_0001878g0060' => 'nta', 'Nitab4.5_0002838g0100' => 'nta', 'Nitab4.5_0002838g0120' => 'nta', 'Nitab4.5_0004798g0030' => 'nta', 'Nitab4.5_0005420g0010' => 'nta', 'Nitab4.5_0005507g0010' => 'nta', 'Nitab4.5_0005574g0020' => 'nta', 'Nitab4.5_0005838g0010' => 'nta', 'Nitab4.5_0010580g0020' => 'nta', 'Nn1g02599' => 'nnu', 'Nn1g02608' => 'nnu', 'Nn3g17742' => 'nnu', 'Nn3g19534' => 'nnu', 'Nn3g19535' => 'nnu', 'Oeu008790.1' => 'oeu', 'Oeu008792.1' => 'oeu', 'Oeu032590.1' => 'oeu', 'Oeu035349.1' => 'oeu', 'Oeu049791.1' => 'oeu', 'Os01g0774500' => 'osa', 'Os03g0628800' => 'osa', 'Os03g0798600' => 'osa', 'Os05g0508800' => 'osa', 'Peaxi162Scf00036g02018' => 'pax', 'Peaxi162Scf00578g00032' => 'pax', 'Peaxi162Scf00578g00317' => 'pax', 'Peaxi162Scf00785g00114' => 'pax', 'Peaxi162Scf00813g00119' => 'pax', 'Peaxi162Scf00906g00227' => 'pax', 'PGR004G0875' => 'pgr', 'PGR004G2424' => 'pgr', 'PGR031G1239' => 'pgr', 'PGR031G2474' => 'pgr', 'PGR044G0423' => 'pgr', 'PGSC0003DMG400001128' => 'stu', 'PGSC0003DMG400007336' => 'stu', 'PGSC0003DMG400016318' => 'stu', 'PGSC0003DMG400016319' => 'stu', 'PGSC0003DMG400018074' => 'stu', 'Phvul.001G157700' => 'pvu', 'Phvul.002G148550' => 'pvu', 'Phvul.002G320200' => 'pvu', 'Phvul.003G089200' => 'pvu', 'Phvul.007G126000' => 'pvu', 'Phvul.007G126100' => 'pvu', 'Phvul.007G178000' => 'pvu', 'Phvul.007G178200' => 'pvu', 'Potri.002G043000' => 'ptr', 'Potri.002G043200' => 'ptr', 'Potri.003G123750' => 'ptr', 'Potri.005G055401' => 'ptr', 'Potri.005G219700' => 'ptr', 'Potri.005G220000' => 'ptr', 'Potri.008G161901' => 'ptr', 'Potri.008G162000' => 'ptr', 'Potri.008G162400' => 'ptr', 'Potri.010G076900' => 'ptr', 'Pp3c12_9180' => 'ppa', 'Pp3c13_19770' => 'ppa', 'Pp3c14_22950' => 'ppa', 'Pp3c16_12160' => 'ppa', 'Pp3c27_7820' => 'ppa', 'Pp3c2_3490' => 'ppa', 'Pp3c3_23700' => 'ppa', 'Pp3c3_36520' => 'ppa', 'Pp3c4_15250' => 'ppa', 'PRCOL_00007002' => 'pco', 'Prupe.1G030600' => 'ppe', 'Prupe.1G030700' => 'ppe', 'Prupe.6G345200' => 'ppe', 'Prupe.8G230300' => 'ppe', 'Prupe.8G230500' => 'ppe', 'Psat3g059600' => 'psa', 'Psat5g200920' => 'psa', 'Psat6g056440' => 'psa', 'Psat6g057360' => 'psa', 'Psat6g134120' => 'psa', 'Psat6g134160' => 'psa', 'Psat7g008640' => 'psa', 'Psat7g185240' => 'psa', 'PSO017G1330' => 'pso', 'PSO063G6097' => 'pso', 'PSO170G0835' => 'pso', 'PSO170G2499' => 'pso', 'PSO210G5058' => 'pso', 'PSO210G6154' => 'pso', 'PSO585G0031' => 'pso', 'PSO832G0264' => 'pso', 'PSO832G4288' => 'pso', 'QL03p027355' => 'qlo', 'QL03p027430' => 'qlo', 'QL04p081380' => 'qlo', 'QL06p015642' => 'qlo', 'QL06p015650' => 'qlo', 'QL06p015686' => 'qlo', 'QL12p042927' => 'qlo', 'QL93p1863_0035' => 'qlo', 'RcHm_v2.0_Chr3g0450581' => 'rch', 'RcHm_v2.0_Chr4g0390371' => 'rch', 'RcHm_v2.0_Chr4g0390381' => 'rch', 'RcHm_v2.0_Chr4g0390491' => 'rch', 'RcHm_v2.0_Chr4g0390501' => 'rch', 'RcHm_v2.0_Chr6g0289231' => 'rch', 'Rhsim04G0190400' => 'rsi', 'Rhsim04G0190500' => 'rsi', 'Rhsim04G0190600' => 'rsi', 'Rhsim13G0031400' => 'rsi', 'Rhsim13G0165600' => 'rsi', 'RhsimUnG0114600' => 'rsi', 'RhsimUnG0114700' => 'rsi', 'Sabra02G0034800' => 'sbr', 'Sabra02G0035100' => 'sbr', 'Sabra05G0168600' => 'sbr', 'Sabra05G0168800' => 'sbr', 'Sabra08G0123700' => 'sbr', 'Sabra10G0031900' => 'sbr', 'Sabra13G0039000' => 'sbr', 'SalBow2G0782' => 'sbo', 'SalBow2G1403' => 'sbo', 'SalBow4G0074' => 'sbo', 'SalBow4G2635' => 'sbo', 'SalBow5G3010' => 'sbo', 'Sc05g0000870' => 'sci', 'Sc05g0000890' => 'sci', 'Sc13g0005000' => 'sci', 'Sc13g0005030' => 'sci', 'Sc19g0003790' => 'sci', 'Sc19g0003800' => 'sci', 'Sed0003467' => 'sed', 'Sed0009355' => 'sed', 'Sed0009894' => 'sed', 'Sed0011972' => 'sed', 'Sed0021483' => 'sed', 'Sed0021750' => 'sed', 'Sed0026279' => 'sed', 'SEGI_05312' => 'sgi', 'SEGI_10112' => 'sgi', 'SEGI_15835' => 'sgi', 'SEGI_30386' => 'sgi', 'SEGI_34122' => 'sgi', 'SEGI_35063' => 'sgi', 'SGA_v2.0_scaffold101G29794' => 'sas', 'SGA_v2.0_scaffold1G00573' => 'sas', 'SGA_v2.0_scaffold79G25637' => 'sas', 'SGA_v2.0_scaffold88G27283' => 'sas', 'SGA_v2.0_scaffold88G27285' => 'sas', 'SGA_v2.0_scaffold88G27331' => 'sas', 'SHI09937' => 'shi', 'SMO119G0302' => 'smo', 'SMO137G0231' => 'smo', 'SMO367G1151' => 'smo', 'Solyc02g082000.3' => 'sly', 'Solyc06g031670.3' => 'sly', 'Solyc06g053810.3' => 'sly', 'Solyc07g025457.1' => 'sly', 'Solyc08g059740.1' => 'sly', 'Solyc08g059750.3' => 'sly', 'Solyc09g083370.3' => 'sly', 'Solyc12g038950.3' => 'sly', 'Sopen02g026630' => 'spe', 'Sopen06g018930' => 'spe', 'Sopen06g018940' => 'spe', 'Sopen08g009460' => 'spe', 'Sopen09g032290' => 'spe', 'Sp1g03080' => 'spa', 'Sp1g03090' => 'spa', 'Sp1g05480' => 'spa', 'Sp2g07860' => 'spa', 'Sp2g08430' => 'spa', 'Sp2g08440' => 'spa', 'Sp2g26200' => 'spa', 'Sp4g13170' => 'spa', 'Sp6g33840' => 'spa', 'SpUn1204_0010' => 'spa', 'TAR365G0908' => 'tar', 'TAR381G1270' => 'tar', 'TAR381G1651' => 'tar', 'TAR625G1131' => 'tar', 'TAR633G0962' => 'tar', 'TAR633G1729' => 'tar', 'TAR633G1864' => 'tar', 'TAR636G0221' => 'tar', 'TAR636G0314' => 'tar', 'TAR636G3202' => 'tar', 'THA.LOC104800805' => 'tha', 'THA.LOC104801096' => 'tha', 'THA.LOC104801555' => 'tha', 'THA.LOC104808491' => 'tha', 'THA.LOC104808595' => 'tha', 'THA.LOC104815985' => 'tha', 'THA.LOC104822250' => 'tha', 'THA.LOC104826071' => 'tha', 'Thecc.01G265200' => 'tca', 'Thecc.01G265300' => 'tca', 'Thecc.01G265700' => 'tca', 'Thecc.03G109100' => 'tca', 'Thecc.04G245900' => 'tca', 'Thecc.04G246000' => 'tca', 'Thhalv10003334m.g' => 'esa', 'Thhalv10005508m.g' => 'esa', 'Thhalv10005643m.g' => 'esa', 'Thhalv10007316m.g' => 'esa', 'Thhalv10009006m.g' => 'esa', 'Thhalv10009309m.g' => 'esa', 'Thhalv10014917m.g' => 'esa', 'Thhalv10014919m.g' => 'esa', 'Thhalv10015393m.g' => 'esa', 'Thhalv10016515m.g' => 'esa', 'Thhalv10029242m.g' => 'esa', 'TPR.G16654' => 'tpr', 'TPR.G20589' => 'tpr', 'TPR.G23029' => 'tpr', 'TPR.G27731' => 'tpr', 'TPR.G28889' => 'tpr', 'TPR.G28899' => 'tpr', 'TPR.G30846' => 'tpr', 'TPR.G5452' => 'tpr', 'TPR.G5713' => 'tpr', 'TPR.G9046' => 'tpr', 'TPR.G9061' => 'tpr', 'TWI09G1075' => 'twi', 'TWI12G0806' => 'twi', 'TWI18G0108' => 'twi', 'TWI53G1361' => 'twi', 'TWI73G0185' => 'twi', 'TWI73G0427' => 'twi', 'unitig_37.g12001' => 'ugi', 'unitig_747.g21660' => 'ugi', 'unitig_748.g7232' => 'ugi', 'unitig_748.g7315' => 'ugi', 'unitig_85.g27262' => 'ugi', 'unitig_92.g28220' => 'ugi', 'vmacro02632' => 'vma', 'vmacro08410' => 'vma', 'vmacro08411' => 'vma', 'vmacro15407' => 'vma', 'VMungo0251G3619' => 'vmu', 'VMungo0720G1204' => 'vmu', 'VMungo0720G1918' => 'vmu', 'VMungo0720G2387' => 'vmu', 'VMungo0720G2961' => 'vmu', 'VMungo1215G2154' => 'vmu', 'VMungo1383G2411' => 'vmu', 'Zm00001eb051130' => 'zma', 'Zm00001eb116830' => 'zma', 'Zm00001eb116850' => 'zma', 'Zm00001eb151740' => 'zma', 'Zm00001eb292360' => 'zma', 'Zm00001eb301640' => 'zma' ) $gf_id = 'HOM05D000856' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000856' ) $data_identifier = 'HOM05D000856' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 13, 'ath' => (int) 10, 'atr' => (int) 1, 'acertr' => (int) 8, 'cqu' => (int) 6, 'bca' => (int) 21, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 11, 'car' => (int) 9, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 8, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 5, 'fan' => (int) 16, 'fve' => (int) 6, 'gma' => (int) 11, 'ghi' => (int) 19, 'gra' => (int) 9, 'vvi' => (int) 7, 'han' => (int) 17, 'cav' => (int) 5, 'hma' => (int) 2, 'vpl' => (int) 2, 'sun' => (int) 7, 'lal' => (int) 9, 'lja' => (int) 5, 'lonja' => (int) 9, 'lsa' => (int) 5, 'mes' => (int) 8, 'mpo' => (int) 3, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 10, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 15, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 9, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 9, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 6, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 5, 'spa' => (int) 10, 'tar' => (int) 10, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 11, 'tpr' => (int) 11, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 4, 'vmu' => (int) 7, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb301640' $species_info = array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ) $local_species = 'dzi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000856', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p00010' => 'bna', 'A03p04160' => 'bna', 'A03p17160' => 'bna', 'A04p23370' => 'bna', 'A05p14860' => 'bna', 'A08p37020' => 'bna', 'A09p08050' => 'bna', 'A09p66800' => 'bna', 'A09p67940' => 'bna', 'A10p02680' => 'bna', 'A10p05320' => 'bna', 'Aa31LG1G20560' => 'aar', 'Aa31LG1G20610' => 'aar', 'Aa31LG1G7810' => 'aar', 'Aa31LG5G3590' => 'aar', 'Aa31LG5G6140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3819' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4683' => 'aag', 'Actinidia04480' => 'ach', 'Actinidia05466' => 'ach', 'Actinidia08445' => 'ach', 'Actinidia21170' => 'ach', 'Actinidia24812' => 'ach', 'Actinidia24951' => 'ach', 'Actinidia40088' => 'ach', 'Ah.02g111660' => 'amhyb', 'Ah.11g048900' => 'amhyb', 'Ah.11g049910' => 'amhyb', 'AL1G13870' => 'aly', 'AL1G13880' => 'aly', 'AL1G16760' => 'aly', 'AL390U10020' => 'aly', 'AL4G25520' => 'aly', 'AL6G19890' => 'aly', 'AL6G19900' => 'aly', 'AL6G19910' => 'aly', 'AL8G40100' => 'aly', 'Aqoxy2G03562' => 'aox', 'Aqoxy5G00316' => 'aox', 'Aqoxy5G00926' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1628KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1H403S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2FU6SJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.882I6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8YRY2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YN1SN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AF70II' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZA8L1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F916KL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHRD8H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KTZ8QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S22EMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8M29T' => 'arhy', 'AT1G04270' => 'ath', 'AT1G04280' => 'ath', 'AT1G06750' => 'ath', 'AT1G33850' => 'ath', 'AT2G30630' => 'ath', 'AT5G09490' => 'ath', 'AT5G09500' => 'ath', 'AT5G09510' => 'ath', 'AT5G43640' => 'ath', 'AT5G63070' => 'ath', 'ATR0605G315' => 'atr', 'Atru.chr11.175' => 'acertr', 'Atru.chr11.653' => 'acertr', 'Atru.chr3.1616' => 'acertr', 'Atru.chr4.2230' => 'acertr', 'Atru.chr4.2232' => 'acertr', 'Atru.chr5.1598' => 'acertr', 'Atru.chr5.1600' => 'acertr', 'Atru.chr5.2188' => 'acertr', 'AUR62008326' => 'cqu', 'AUR62011922' => 'cqu', 'AUR62011924' => 'cqu', 'AUR62021771' => 'cqu', 'AUR62032237' => 'cqu', 'AUR62032240' => 'cqu', 'BcaB01g05572' => 'bca', 'BcaB02g10337' => 'bca', 'BcaB04g19944' => 'bca', 'BcaB05g21548' => 'bca', 'BcaB05g21549' => 'bca', 'BcaB05g23227' => 'bca', 'BcaB06g26256' => 'bca', 'BcaB06g26257' => 'bca', 'BcaB06g28379' => 'bca', 'BcaC02g11159' => 'bca', 'BcaC03g13258' => 'bca', 'BcaC03g13259' => 'bca', 'BcaC05g24456' => 'bca', 'BcaC05g24457' => 'bca', 'BcaC07g36922' => 'bca', 'BcaC07g36923' => 'bca', 'BcaC07g42050' => 'bca', 'BcaC07g42176' => 'bca', 'BcaC07g42195' => 'bca', 'BcaC07g42196' => 'bca', 'BcaNung06674' => 'bca', 'BolC2t06351H' => 'bol', 'BolC2t06352H' => 'bol', 'BolC3t12993H' => 'bol', 'BolC4t23525H' => 'bol', 'BolC4t27475H' => 'bol', 'BolC5t29025H' => 'bol', 'BolC5t29026H' => 'bol', 'BolC8t46898H' => 'bol', 'BolC8t46899H' => 'bol', 'BolC8t52630H' => 'bol', 'BolC8t52765H' => 'bol', 'BolC9t53824H' => 'bol', 'BraA03t09760Z' => 'bra', 'BraA03t10990Z' => 'bra', 'BraA05t20413Z' => 'bra', 'BraA08t35602Z' => 'bra', 'BraA09t36458Z' => 'bra', 'BraA09t42018Z' => 'bra', 'BraA09t42129Z' => 'bra', 'BraA10t42536Z' => 'bra', 'BraA10t42537Z' => 'bra', 'C01p10690' => 'bna', 'C02p03890' => 'bna', 'C02p03900' => 'bna', 'C03p04620' => 'bna', 'C04p19870' => 'bna', 'C04p59670' => 'bna', 'C05p02460' => 'bna', 'C05p02470' => 'bna', 'C08p00980' => 'bna', 'C08p00990' => 'bna', 'C08p51030' => 'bna', 'C08p52360' => 'bna', 'C09p09120' => 'bna', 'CAN.G19.15' => 'can', 'CAN.G251.10' => 'can', 'CAN.G251.9' => 'can', 'CAN.G398.24' => 'can', 'CAN.G410.32' => 'can', 'CAN.G881.2' => 'can', 'CANSAT01G3025' => 'cansat', 'CANSAT78G1211' => 'cansat', 'CANSAT78G1218' => 'cansat', 'CANSAT78G1521' => 'cansat', 'CANSAT78G1670' => 'cansat', 'CARHR003600' => 'chi', 'CARHR003610' => 'chi', 'CARHR006290' => 'chi', 'CARHR006430' => 'chi', 'CARHR124110' => 'chi', 'CARHR203870' => 'chi', 'CARHR203880' => 'chi', 'CARHR203890' => 'chi', 'CARHR276880' => 'chi', 'Carub.0001s0346' => 'cru', 'Carub.0001s0347' => 'cru', 'Carub.0001s0607' => 'cru', 'Carub.0003s2768' => 'cru', 'Carub.0003s2769' => 'cru', 'Carub.0004s1178' => 'cru', 'Carub.0006s0806' => 'cru', 'Carub.0006s0807' => 'cru', 'Carub.0006s0808' => 'cru', 'Carub.0008s0501' => 'cru', 'Carub.0008s2379' => 'cru', 'Ca_08655_v3' => 'car', 'Ca_08922_v3' => 'car', 'Ca_08923_v3' => 'car', 'Ca_09119_v3' => 'car', 'Ca_09703_v3' => 'car', 'Ca_09705_v3' => 'car', 'Ca_09835_v3' => 'car', 'Ca_26403_v3' => 'car', 'Ca_30719_v3' => 'car', 'CBR_g17958' => 'cbr', 'CBR_g40516' => 'cbr', 'Cc00_g05350' => 'ccan', 'Cc01_g18690' => 'ccan', 'Cc03_g04830' => 'ccan', 'Cc03_g04850' => 'ccan', 'CDE02G4469' => 'cde', 'CDE06G0883' => 'cde', 'CDE06G1295' => 'cde', 'CDE06G1390' => 'cde', 'CDE07G0584' => 'cde', 'CDE07G1084' => 'cde', 'CDE08G1259' => 'cde', 'Cfa002341' => 'cfa', 'Cfa024337' => 'cfa', 'Ciclev10004749m.g' => 'ccl', 'Ciclev10006127m.g' => 'ccl', 'Ciclev10019720m.g' => 'ccl', 'Ciclev10022652m.g' => 'ccl', 'CiPaw.01G190400' => 'cil', 'CiPaw.01G190500' => 'cil', 'CiPaw.02G116400' => 'cil', 'CiPaw.02G116500' => 'cil', 'CiPaw.04G183000' => 'cil', 'CiPaw.04G183300' => 'cil', 'ClCG05G004610' => 'cla', 'ClCG05G004620' => 'cla', 'ClCG06G006730' => 'cla', 'ClCG06G006740' => 'cla', 'ClCG11G003690' => 'cla', 'COL.COLO4_08276' => 'col', 'COL.COLO4_08277' => 'col', 'COL.COLO4_15787' => 'col', 'COL.COLO4_15789' => 'col', 'Cpa.g.c44815' => 'cpa', 'Cpa.g.sc52.144' => 'cpa', 'Cpa.g.sc58.46' => 'cpa', 'Cpa.g.sc58.47' => 'cpa', 'Cre08.g360900' => 'cre', 'CsaV3_2G013030' => 'csa', 'CsaV3_2G013050' => 'csa', 'CsaV3_2G015620' => 'csa', 'CsaV3_3G012590' => 'csa', 'CsaV3_3G012600' => 'csa', 'CSS0001641' => 'camsi', 'CSS0008310' => 'camsi', 'CSS0013011' => 'camsi', 'CSS0017147' => 'camsi', 'CSS0022970' => 'camsi', 'CSS0025655' => 'camsi', 'CSS0028665' => 'camsi', 'CSS0029117' => 'camsi', 'CSS0032024' => 'camsi', 'CSS0039681' => 'camsi', 'CSS0046516' => 'camsi', 'CSS0050307' => 'camsi', 'DCAR_005871' => 'dca', 'DCAR_007342' => 'dca', 'DCAR_024228' => 'dca', 'DCAR_027277' => 'dca', 'DCAR_030718' => 'dca', 'Dinv20287' => 'din', 'Dinv22461' => 'din', 'Dinv22464' => 'din', 'Dinv29912' => 'din', 'Dinv29913' => 'din', 'Dinv34580' => 'din', 'Dinv34582' => 'din', 'Dinv44632' => 'din', 'Duzib052G0266' => 'dzi', 'Duzib133G0907' => 'dzi', 'Duzib133G1034' => 'dzi', 'Duzib138G0207' => 'dzi', 'Duzib138G0491' => 'dzi', 'Duzib151G0812' => 'dzi', 'Duzib151G1166' => 'dzi', 'Duzib168G0192' => 'dzi', 'Duzib211G0077' => 'dzi', 'Duzib212G0429' => 'dzi', 'Duzib212G0472' => 'dzi', 'ECA233G2617' => 'eca', 'ECA236G4188' => 'eca', 'ECA240G0936' => 'eca', 'ECA240G1129' => 'eca', 'ECA247G0623' => 'eca', 'EL10Ac5g10451' => 'bvu', 'EL10Ac5g10453' => 'bvu', 'EL10Ac5g10894' => 'bvu', 'Eucgr.H00192' => 'egr', 'Eucgr.H00193' => 'egr', 'Eucgr.H00194' => 'egr', 'Eucgr.J01562' => 'egr', 'Eucgr.K03301' => 'egr', 'FAN02G0632' => 'fan', 'FAN05G5378' => 'fan', 'FAN09G3247' => 'fan', 'FAN12G0435' => 'fan', 'FAN12G2426' => 'fan', 'FAN14G1707' => 'fan', 'FAN14G4725' => 'fan', 'FAN15G2071' => 'fan', 'FAN17G3065' => 'fan', 'FAN19G1376' => 'fan', 'FAN20G0354' => 'fan', 'FAN20G2429' => 'fan', 'FAN20G2658' => 'fan', 'FAN24G2343' => 'fan', 'FAN27G2362' => 'fan', 'FAN28G1765' => 'fan', 'FvH4_1g16020' => 'fve', 'FvH4_2g04890' => 'fve', 'FvH4_2g22270' => 'fve', 'FvH4_4g02630' => 'fve', 'FvH4_4g02640' => 'fve', 'FvH4_6g02650' => 'fve', 'Glyma.02G140600' => 'gma', 'Glyma.03G159900' => 'gma', 'Glyma.05G234800' => 'gma', 'Glyma.07G269600' => 'gma', 'Glyma.08G042300' => 'gma', 'Glyma.10G033500' => 'gma', 'Glyma.10G185200' => 'gma', 'Glyma.17G004300' => 'gma', 'Glyma.19G161900' => 'gma', 'Glyma.20G205100' => 'gma', 'Glyma.20G205200' => 'gma', 'Gohir.A01G139101' => 'ghi', 'Gohir.A02G035600' => 'ghi', 'Gohir.A02G117901' => 'ghi', 'Gohir.A07G210100' => 'ghi', 'Gohir.A07G210200' => 'ghi', 'Gohir.A08G061100' => 'ghi', 'Gohir.A09G223000' => 'ghi', 'Gohir.A09G223100' => 'ghi', 'Gohir.A10G113900' => 'ghi', 'Gohir.A10G114000' => 'ghi', 'Gohir.D02G042300' => 'ghi', 'Gohir.D07G216100' => 'ghi', 'Gohir.D07G216200' => 'ghi', 'Gohir.D08G070400' => 'ghi', 'Gohir.D09G225000' => 'ghi', 'Gohir.D09G225100' => 'ghi', 'Gohir.D10G152300' => 'ghi', 'Gohir.D10G153200' => 'ghi', 'Gohir.D11G133701' => 'ghi', 'Gorai.004G074100' => 'gra', 'Gorai.005G046800' => 'gra', 'Gorai.006G246500' => 'gra', 'Gorai.006G246600' => 'gra', 'Gorai.007G142900' => 'gra', 'Gorai.011G171000' => 'gra', 'Gorai.011G171100' => 'gra', 'Gorai.013G104300' => 'gra', 'Gorai.013G104400' => 'gra', 'GSVIVG01000754001' => 'vvi', 'GSVIVG01000756001' => 'vvi', 'GSVIVG01010903001' => 'vvi', 'GSVIVG01017623001' => 'vvi', 'GSVIVG01018113001' => 'vvi', 'GSVIVG01018116001' => 'vvi', 'GSVIVG01018118001' => 'vvi', 'HanXRQChr03g0076211' => 'han', 'HanXRQChr03g0092431' => 'han', 'HanXRQChr03g0092441' => 'han', 'HanXRQChr03g0092591' => 'han', 'HanXRQChr03g0092671' => 'han', 'HanXRQChr03g0092681' => 'han', 'HanXRQChr03g0092691' => 'han', 'HanXRQChr03g0092701' => 'han', 'HanXRQChr03g0092721' => 'han', 'HanXRQChr03g0092731' => 'han', 'HanXRQChr04g0113681' => 'han', 'HanXRQChr10g0281371' => 'han', 'HanXRQChr11g0337141' => 'han', 'HanXRQChr13g0424521' => 'han', 'HanXRQChr13g0424531' => 'han', 'HanXRQChr13g0424541' => 'han', 'HanXRQChr16g0498221' => 'han', 'Haze_04377' => 'cav', 'Haze_11298' => 'cav', 'Haze_24547' => 'cav', 'Haze_24550' => 'cav', 'Haze_26587' => 'cav', 'Hma1.2p1_0650F.1_g195410' => 'hma', 'Hma1.2p1_0893F.1_g233470' => 'hma', 'HPP92_006508' => 'vpl', 'HPP92_024780' => 'vpl', 'Hund02688' => 'sun', 'Hund09380' => 'sun', 'Hund09381' => 'sun', 'Hund09832' => 'sun', 'Hund09833' => 'sun', 'Hund11351' => 'sun', 'Hund11513' => 'sun', 'Lalb_Chr06g0162591' => 'lal', 'Lalb_Chr06g0162601' => 'lal', 'Lalb_Chr06g0169321' => 'lal', 'Lalb_Chr09g0330951' => 'lal', 'Lalb_Chr16g0387631' => 'lal', 'Lalb_Chr21g0306241' => 'lal', 'Lalb_Chr25g0290051' => 'lal', 'Lalb_Chr25g0290061' => 'lal', 'Lalb_Chr25g0290071' => 'lal', 'Lj1g0003876' => 'lja', 'Lj1P1207T36' => 'lonja', 'Lj2C1156G12' => 'lonja', 'Lj3A793G39' => 'lonja', 'Lj3C580G2' => 'lonja', 'Lj3C780G2' => 'lonja', 'Lj3C780T4' => 'lonja', 'Lj3C793G9' => 'lonja', 'Lj4g0012960' => 'lja', 'Lj5g0021252' => 'lja', 'Lj5g0021484' => 'lja', 'Lj5g0024528' => 'lja', 'Lj6A399T12' => 'lonja', 'Lj6A656G65' => 'lonja', 'Lsat_1_v5_gn_3_125500' => 'lsa', 'Lsat_1_v5_gn_3_125540' => 'lsa', 'Lsat_1_v5_gn_5_72701' => 'lsa', 'Lsat_1_v5_gn_8_91560' => 'lsa', 'Lsat_1_v5_gn_9_9640' => 'lsa', 'Manes.01G200600' => 'mes', 'Manes.01G200700' => 'mes', 'Manes.03G168900' => 'mes', 'Manes.03G169000' => 'mes', 'Manes.05G085801' => 'mes', 'Manes.05G086200' => 'mes', 'Manes.15G036700' => 'mes', 'Manes.15G036900' => 'mes', 'Mapoly0004s0172' => 'mpo', 'Mapoly0023s0001' => 'mpo', 'Mapoly0142s0012' => 'mpo', 'MBI01_g32854_MAGBIO' => 'mbi', 'MBI11_g24427_MAGBIO' => 'mbi', 'MBI11_g47319_MAGBIO' => 'mbi', 'MCO01G433' => 'mco', 'MD00G1187800' => 'mdo', 'MD04G1226500' => 'mdo', 'MD05G1203900' => 'mdo', 'MD10G1191100' => 'mdo', 'MD12G1243500' => 'mdo', 'MD13G1207000' => 'mdo', 'MD13G1207100' => 'mdo', 'MD16G1208600' => 'mdo', 'Medtr1g050352' => 'mtr', 'Medtr1g070385' => 'mtr', 'Medtr1g070450' => 'mtr', 'Medtr1g075200' => 'mtr', 'Medtr1g075250' => 'mtr', 'Medtr1g075260' => 'mtr', 'Medtr1g475250' => 'mtr', 'Medtr4g075450' => 'mtr', 'Medtr7g096300' => 'mtr', 'Medtr8g105110' => 'mtr', 'MELO3C006470.2' => 'cme', 'MELO3C006471.2' => 'cme', 'MELO3C020772.2' => 'cme', 'MELO3C026780.2' => 'cme', 'MELO3C026781.2' => 'cme', 'Migut.D00390' => 'egut', 'Migut.G00435' => 'egut', 'Migut.G00436' => 'egut', 'Migut.G00718' => 'egut', 'MSTRG.21891' => 'ama', 'MSTRG.26910' => 'ama', 'MSTRG.4099' => 'ama', 'MSTRG.9925' => 'ama', 'Nitab4.5_0000165g0010' => 'nta', 'Nitab4.5_0000209g0180' => 'nta', 'Nitab4.5_0000244g0440' => 'nta', 'Nitab4.5_0000525g0220' => 'nta', 'Nitab4.5_0001597g0020' => 'nta', 'Nitab4.5_0001878g0040' => 'nta', 'Nitab4.5_0001878g0060' => 'nta', 'Nitab4.5_0002838g0100' => 'nta', 'Nitab4.5_0002838g0120' => 'nta', 'Nitab4.5_0004798g0030' => 'nta', 'Nitab4.5_0005420g0010' => 'nta', 'Nitab4.5_0005507g0010' => 'nta', 'Nitab4.5_0005574g0020' => 'nta', 'Nitab4.5_0005838g0010' => 'nta', 'Nitab4.5_0010580g0020' => 'nta', 'Nn1g02599' => 'nnu', 'Nn1g02608' => 'nnu', 'Nn3g17742' => 'nnu', 'Nn3g19534' => 'nnu', 'Nn3g19535' => 'nnu', 'Oeu008790.1' => 'oeu', 'Oeu008792.1' => 'oeu', 'Oeu032590.1' => 'oeu', 'Oeu035349.1' => 'oeu', 'Oeu049791.1' => 'oeu', 'Os01g0774500' => 'osa', 'Os03g0628800' => 'osa', 'Os03g0798600' => 'osa', 'Os05g0508800' => 'osa', 'Peaxi162Scf00036g02018' => 'pax', 'Peaxi162Scf00578g00032' => 'pax', 'Peaxi162Scf00578g00317' => 'pax', 'Peaxi162Scf00785g00114' => 'pax', 'Peaxi162Scf00813g00119' => 'pax', 'Peaxi162Scf00906g00227' => 'pax', 'PGR004G0875' => 'pgr', 'PGR004G2424' => 'pgr', 'PGR031G1239' => 'pgr', 'PGR031G2474' => 'pgr', 'PGR044G0423' => 'pgr', 'PGSC0003DMG400001128' => 'stu', 'PGSC0003DMG400007336' => 'stu', 'PGSC0003DMG400016318' => 'stu', 'PGSC0003DMG400016319' => 'stu', 'PGSC0003DMG400018074' => 'stu', 'Phvul.001G157700' => 'pvu', 'Phvul.002G148550' => 'pvu', 'Phvul.002G320200' => 'pvu', 'Phvul.003G089200' => 'pvu', 'Phvul.007G126000' => 'pvu', 'Phvul.007G126100' => 'pvu', 'Phvul.007G178000' => 'pvu', 'Phvul.007G178200' => 'pvu', 'Potri.002G043000' => 'ptr', 'Potri.002G043200' => 'ptr', 'Potri.003G123750' => 'ptr', 'Potri.005G055401' => 'ptr', 'Potri.005G219700' => 'ptr', 'Potri.005G220000' => 'ptr', 'Potri.008G161901' => 'ptr', 'Potri.008G162000' => 'ptr', 'Potri.008G162400' => 'ptr', 'Potri.010G076900' => 'ptr', 'Pp3c12_9180' => 'ppa', 'Pp3c13_19770' => 'ppa', 'Pp3c14_22950' => 'ppa', 'Pp3c16_12160' => 'ppa', 'Pp3c27_7820' => 'ppa', 'Pp3c2_3490' => 'ppa', 'Pp3c3_23700' => 'ppa', 'Pp3c3_36520' => 'ppa', 'Pp3c4_15250' => 'ppa', 'PRCOL_00007002' => 'pco', 'Prupe.1G030600' => 'ppe', 'Prupe.1G030700' => 'ppe', 'Prupe.6G345200' => 'ppe', 'Prupe.8G230300' => 'ppe', 'Prupe.8G230500' => 'ppe', 'Psat3g059600' => 'psa', 'Psat5g200920' => 'psa', 'Psat6g056440' => 'psa', 'Psat6g057360' => 'psa', 'Psat6g134120' => 'psa', 'Psat6g134160' => 'psa', 'Psat7g008640' => 'psa', 'Psat7g185240' => 'psa', 'PSO017G1330' => 'pso', 'PSO063G6097' => 'pso', 'PSO170G0835' => 'pso', 'PSO170G2499' => 'pso', 'PSO210G5058' => 'pso', 'PSO210G6154' => 'pso', 'PSO585G0031' => 'pso', 'PSO832G0264' => 'pso', 'PSO832G4288' => 'pso', 'QL03p027355' => 'qlo', 'QL03p027430' => 'qlo', 'QL04p081380' => 'qlo', 'QL06p015642' => 'qlo', 'QL06p015650' => 'qlo', 'QL06p015686' => 'qlo', 'QL12p042927' => 'qlo', 'QL93p1863_0035' => 'qlo', 'RcHm_v2.0_Chr3g0450581' => 'rch', 'RcHm_v2.0_Chr4g0390371' => 'rch', 'RcHm_v2.0_Chr4g0390381' => 'rch', 'RcHm_v2.0_Chr4g0390491' => 'rch', 'RcHm_v2.0_Chr4g0390501' => 'rch', 'RcHm_v2.0_Chr6g0289231' => 'rch', 'Rhsim04G0190400' => 'rsi', 'Rhsim04G0190500' => 'rsi', 'Rhsim04G0190600' => 'rsi', 'Rhsim13G0031400' => 'rsi', 'Rhsim13G0165600' => 'rsi', 'RhsimUnG0114600' => 'rsi', 'RhsimUnG0114700' => 'rsi', 'Sabra02G0034800' => 'sbr', 'Sabra02G0035100' => 'sbr', 'Sabra05G0168600' => 'sbr', 'Sabra05G0168800' => 'sbr', 'Sabra08G0123700' => 'sbr', 'Sabra10G0031900' => 'sbr', 'Sabra13G0039000' => 'sbr', 'SalBow2G0782' => 'sbo', 'SalBow2G1403' => 'sbo', 'SalBow4G0074' => 'sbo', 'SalBow4G2635' => 'sbo', 'SalBow5G3010' => 'sbo', 'Sc05g0000870' => 'sci', 'Sc05g0000890' => 'sci', 'Sc13g0005000' => 'sci', 'Sc13g0005030' => 'sci', 'Sc19g0003790' => 'sci', 'Sc19g0003800' => 'sci', 'Sed0003467' => 'sed', 'Sed0009355' => 'sed', 'Sed0009894' => 'sed', 'Sed0011972' => 'sed', 'Sed0021483' => 'sed', 'Sed0021750' => 'sed', 'Sed0026279' => 'sed', 'SEGI_05312' => 'sgi', 'SEGI_10112' => 'sgi', 'SEGI_15835' => 'sgi', 'SEGI_30386' => 'sgi', 'SEGI_34122' => 'sgi', 'SEGI_35063' => 'sgi', 'SGA_v2.0_scaffold101G29794' => 'sas', 'SGA_v2.0_scaffold1G00573' => 'sas', 'SGA_v2.0_scaffold79G25637' => 'sas', 'SGA_v2.0_scaffold88G27283' => 'sas', 'SGA_v2.0_scaffold88G27285' => 'sas', 'SGA_v2.0_scaffold88G27331' => 'sas', 'SHI09937' => 'shi', 'SMO119G0302' => 'smo', 'SMO137G0231' => 'smo', 'SMO367G1151' => 'smo', 'Solyc02g082000.3' => 'sly', 'Solyc06g031670.3' => 'sly', 'Solyc06g053810.3' => 'sly', 'Solyc07g025457.1' => 'sly', 'Solyc08g059740.1' => 'sly', 'Solyc08g059750.3' => 'sly', 'Solyc09g083370.3' => 'sly', 'Solyc12g038950.3' => 'sly', 'Sopen02g026630' => 'spe', 'Sopen06g018930' => 'spe', 'Sopen06g018940' => 'spe', 'Sopen08g009460' => 'spe', 'Sopen09g032290' => 'spe', 'Sp1g03080' => 'spa', 'Sp1g03090' => 'spa', 'Sp1g05480' => 'spa', 'Sp2g07860' => 'spa', 'Sp2g08430' => 'spa', 'Sp2g08440' => 'spa', 'Sp2g26200' => 'spa', 'Sp4g13170' => 'spa', 'Sp6g33840' => 'spa', 'SpUn1204_0010' => 'spa', 'TAR365G0908' => 'tar', 'TAR381G1270' => 'tar', 'TAR381G1651' => 'tar', 'TAR625G1131' => 'tar', 'TAR633G0962' => 'tar', 'TAR633G1729' => 'tar', 'TAR633G1864' => 'tar', 'TAR636G0221' => 'tar', 'TAR636G0314' => 'tar', 'TAR636G3202' => 'tar', 'THA.LOC104800805' => 'tha', 'THA.LOC104801096' => 'tha', 'THA.LOC104801555' => 'tha', 'THA.LOC104808491' => 'tha', 'THA.LOC104808595' => 'tha', 'THA.LOC104815985' => 'tha', 'THA.LOC104822250' => 'tha', 'THA.LOC104826071' => 'tha', 'Thecc.01G265200' => 'tca', 'Thecc.01G265300' => 'tca', 'Thecc.01G265700' => 'tca', 'Thecc.03G109100' => 'tca', 'Thecc.04G245900' => 'tca', 'Thecc.04G246000' => 'tca', 'Thhalv10003334m.g' => 'esa', 'Thhalv10005508m.g' => 'esa', 'Thhalv10005643m.g' => 'esa', 'Thhalv10007316m.g' => 'esa', 'Thhalv10009006m.g' => 'esa', 'Thhalv10009309m.g' => 'esa', 'Thhalv10014917m.g' => 'esa', 'Thhalv10014919m.g' => 'esa', 'Thhalv10015393m.g' => 'esa', 'Thhalv10016515m.g' => 'esa', 'Thhalv10029242m.g' => 'esa', 'TPR.G16654' => 'tpr', 'TPR.G20589' => 'tpr', 'TPR.G23029' => 'tpr', 'TPR.G27731' => 'tpr', 'TPR.G28889' => 'tpr', 'TPR.G28899' => 'tpr', 'TPR.G30846' => 'tpr', 'TPR.G5452' => 'tpr', 'TPR.G5713' => 'tpr', 'TPR.G9046' => 'tpr', 'TPR.G9061' => 'tpr', 'TWI09G1075' => 'twi', 'TWI12G0806' => 'twi', 'TWI18G0108' => 'twi', 'TWI53G1361' => 'twi', 'TWI73G0185' => 'twi', 'TWI73G0427' => 'twi', 'unitig_37.g12001' => 'ugi', 'unitig_747.g21660' => 'ugi', 'unitig_748.g7232' => 'ugi', 'unitig_748.g7315' => 'ugi', 'unitig_85.g27262' => 'ugi', 'unitig_92.g28220' => 'ugi', 'vmacro02632' => 'vma', 'vmacro08410' => 'vma', 'vmacro08411' => 'vma', 'vmacro15407' => 'vma', 'VMungo0251G3619' => 'vmu', 'VMungo0720G1204' => 'vmu', 'VMungo0720G1918' => 'vmu', 'VMungo0720G2387' => 'vmu', 'VMungo0720G2961' => 'vmu', 'VMungo1215G2154' => 'vmu', 'VMungo1383G2411' => 'vmu', 'Zm00001eb051130' => 'zma', 'Zm00001eb116830' => 'zma', 'Zm00001eb116850' => 'zma', 'Zm00001eb151740' => 'zma', 'Zm00001eb292360' => 'zma', 'Zm00001eb301640' => 'zma' ), 'gf_id' => 'HOM05D000856', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000856' ), 'data_identifier' => 'HOM05D000856', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000856', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p00010' => 'bna', 'A03p04160' => 'bna', 'A03p17160' => 'bna', 'A04p23370' => 'bna', 'A05p14860' => 'bna', 'A08p37020' => 'bna', 'A09p08050' => 'bna', 'A09p66800' => 'bna', 'A09p67940' => 'bna', 'A10p02680' => 'bna', 'A10p05320' => 'bna', 'Aa31LG1G20560' => 'aar', 'Aa31LG1G20610' => 'aar', 'Aa31LG1G7810' => 'aar', 'Aa31LG5G3590' => 'aar', 'Aa31LG5G6140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3819' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4683' => 'aag', 'Actinidia04480' => 'ach', 'Actinidia05466' => 'ach', 'Actinidia08445' => 'ach', 'Actinidia21170' => 'ach', 'Actinidia24812' => 'ach', 'Actinidia24951' => 'ach', 'Actinidia40088' => 'ach', 'Ah.02g111660' => 'amhyb', 'Ah.11g048900' => 'amhyb', 'Ah.11g049910' => 'amhyb', 'AL1G13870' => 'aly', 'AL1G13880' => 'aly', 'AL1G16760' => 'aly', 'AL390U10020' => 'aly', 'AL4G25520' => 'aly', 'AL6G19890' => 'aly', 'AL6G19900' => 'aly', 'AL6G19910' => 'aly', 'AL8G40100' => 'aly', 'Aqoxy2G03562' => 'aox', 'Aqoxy5G00316' => 'aox', 'Aqoxy5G00926' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1628KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1H403S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2FU6SJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.882I6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8YRY2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YN1SN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AF70II' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZA8L1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F916KL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHRD8H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KTZ8QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S22EMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8M29T' => 'arhy', 'AT1G04270' => 'ath', 'AT1G04280' => 'ath', 'AT1G06750' => 'ath', 'AT1G33850' => 'ath', 'AT2G30630' => 'ath', 'AT5G09490' => 'ath', 'AT5G09500' => 'ath', 'AT5G09510' => 'ath', 'AT5G43640' => 'ath', 'AT5G63070' => 'ath', 'ATR0605G315' => 'atr', 'Atru.chr11.175' => 'acertr', 'Atru.chr11.653' => 'acertr', 'Atru.chr3.1616' => 'acertr', 'Atru.chr4.2230' => 'acertr', 'Atru.chr4.2232' => 'acertr', 'Atru.chr5.1598' => 'acertr', 'Atru.chr5.1600' => 'acertr', 'Atru.chr5.2188' => 'acertr', 'AUR62008326' => 'cqu', 'AUR62011922' => 'cqu', 'AUR62011924' => 'cqu', 'AUR62021771' => 'cqu', 'AUR62032237' => 'cqu', 'AUR62032240' => 'cqu', 'BcaB01g05572' => 'bca', 'BcaB02g10337' => 'bca', 'BcaB04g19944' => 'bca', 'BcaB05g21548' => 'bca', 'BcaB05g21549' => 'bca', 'BcaB05g23227' => 'bca', 'BcaB06g26256' => 'bca', 'BcaB06g26257' => 'bca', 'BcaB06g28379' => 'bca', 'BcaC02g11159' => 'bca', 'BcaC03g13258' => 'bca', 'BcaC03g13259' => 'bca', 'BcaC05g24456' => 'bca', 'BcaC05g24457' => 'bca', 'BcaC07g36922' => 'bca', 'BcaC07g36923' => 'bca', 'BcaC07g42050' => 'bca', 'BcaC07g42176' => 'bca', 'BcaC07g42195' => 'bca', 'BcaC07g42196' => 'bca', 'BcaNung06674' => 'bca', 'BolC2t06351H' => 'bol', 'BolC2t06352H' => 'bol', 'BolC3t12993H' => 'bol', 'BolC4t23525H' => 'bol', 'BolC4t27475H' => 'bol', 'BolC5t29025H' => 'bol', 'BolC5t29026H' => 'bol', 'BolC8t46898H' => 'bol', 'BolC8t46899H' => 'bol', 'BolC8t52630H' => 'bol', 'BolC8t52765H' => 'bol', 'BolC9t53824H' => 'bol', 'BraA03t09760Z' => 'bra', 'BraA03t10990Z' => 'bra', 'BraA05t20413Z' => 'bra', 'BraA08t35602Z' => 'bra', 'BraA09t36458Z' => 'bra', 'BraA09t42018Z' => 'bra', 'BraA09t42129Z' => 'bra', 'BraA10t42536Z' => 'bra', 'BraA10t42537Z' => 'bra', 'C01p10690' => 'bna', 'C02p03890' => 'bna', 'C02p03900' => 'bna', 'C03p04620' => 'bna', 'C04p19870' => 'bna', 'C04p59670' => 'bna', 'C05p02460' => 'bna', 'C05p02470' => 'bna', 'C08p00980' => 'bna', 'C08p00990' => 'bna', 'C08p51030' => 'bna', 'C08p52360' => 'bna', 'C09p09120' => 'bna', 'CAN.G19.15' => 'can', 'CAN.G251.10' => 'can', 'CAN.G251.9' => 'can', 'CAN.G398.24' => 'can', 'CAN.G410.32' => 'can', 'CAN.G881.2' => 'can', 'CANSAT01G3025' => 'cansat', 'CANSAT78G1211' => 'cansat', 'CANSAT78G1218' => 'cansat', 'CANSAT78G1521' => 'cansat', 'CANSAT78G1670' => 'cansat', 'CARHR003600' => 'chi', 'CARHR003610' => 'chi', 'CARHR006290' => 'chi', 'CARHR006430' => 'chi', 'CARHR124110' => 'chi', 'CARHR203870' => 'chi', 'CARHR203880' => 'chi', 'CARHR203890' => 'chi', 'CARHR276880' => 'chi', 'Carub.0001s0346' => 'cru', 'Carub.0001s0347' => 'cru', 'Carub.0001s0607' => 'cru', 'Carub.0003s2768' => 'cru', 'Carub.0003s2769' => 'cru', 'Carub.0004s1178' => 'cru', 'Carub.0006s0806' => 'cru', 'Carub.0006s0807' => 'cru', 'Carub.0006s0808' => 'cru', 'Carub.0008s0501' => 'cru', 'Carub.0008s2379' => 'cru', 'Ca_08655_v3' => 'car', 'Ca_08922_v3' => 'car', 'Ca_08923_v3' => 'car', 'Ca_09119_v3' => 'car', 'Ca_09703_v3' => 'car', 'Ca_09705_v3' => 'car', 'Ca_09835_v3' => 'car', 'Ca_26403_v3' => 'car', 'Ca_30719_v3' => 'car', 'CBR_g17958' => 'cbr', 'CBR_g40516' => 'cbr', 'Cc00_g05350' => 'ccan', 'Cc01_g18690' => 'ccan', 'Cc03_g04830' => 'ccan', 'Cc03_g04850' => 'ccan', 'CDE02G4469' => 'cde', 'CDE06G0883' => 'cde', 'CDE06G1295' => 'cde', 'CDE06G1390' => 'cde', 'CDE07G0584' => 'cde', 'CDE07G1084' => 'cde', 'CDE08G1259' => 'cde', 'Cfa002341' => 'cfa', 'Cfa024337' => 'cfa', 'Ciclev10004749m.g' => 'ccl', 'Ciclev10006127m.g' => 'ccl', 'Ciclev10019720m.g' => 'ccl', 'Ciclev10022652m.g' => 'ccl', 'CiPaw.01G190400' => 'cil', 'CiPaw.01G190500' => 'cil', 'CiPaw.02G116400' => 'cil', 'CiPaw.02G116500' => 'cil', 'CiPaw.04G183000' => 'cil', 'CiPaw.04G183300' => 'cil', 'ClCG05G004610' => 'cla', 'ClCG05G004620' => 'cla', 'ClCG06G006730' => 'cla', 'ClCG06G006740' => 'cla', 'ClCG11G003690' => 'cla', 'COL.COLO4_08276' => 'col', 'COL.COLO4_08277' => 'col', 'COL.COLO4_15787' => 'col', 'COL.COLO4_15789' => 'col', 'Cpa.g.c44815' => 'cpa', 'Cpa.g.sc52.144' => 'cpa', 'Cpa.g.sc58.46' => 'cpa', 'Cpa.g.sc58.47' => 'cpa', 'Cre08.g360900' => 'cre', 'CsaV3_2G013030' => 'csa', 'CsaV3_2G013050' => 'csa', 'CsaV3_2G015620' => 'csa', 'CsaV3_3G012590' => 'csa', 'CsaV3_3G012600' => 'csa', 'CSS0001641' => 'camsi', 'CSS0008310' => 'camsi', 'CSS0013011' => 'camsi', 'CSS0017147' => 'camsi', 'CSS0022970' => 'camsi', 'CSS0025655' => 'camsi', 'CSS0028665' => 'camsi', 'CSS0029117' => 'camsi', 'CSS0032024' => 'camsi', 'CSS0039681' => 'camsi', 'CSS0046516' => 'camsi', 'CSS0050307' => 'camsi', 'DCAR_005871' => 'dca', 'DCAR_007342' => 'dca', 'DCAR_024228' => 'dca', 'DCAR_027277' => 'dca', 'DCAR_030718' => 'dca', 'Dinv20287' => 'din', 'Dinv22461' => 'din', 'Dinv22464' => 'din', 'Dinv29912' => 'din', 'Dinv29913' => 'din', 'Dinv34580' => 'din', 'Dinv34582' => 'din', 'Dinv44632' => 'din', 'Duzib052G0266' => 'dzi', 'Duzib133G0907' => 'dzi', 'Duzib133G1034' => 'dzi', 'Duzib138G0207' => 'dzi', 'Duzib138G0491' => 'dzi', 'Duzib151G0812' => 'dzi', 'Duzib151G1166' => 'dzi', 'Duzib168G0192' => 'dzi', 'Duzib211G0077' => 'dzi', 'Duzib212G0429' => 'dzi', 'Duzib212G0472' => 'dzi', 'ECA233G2617' => 'eca', 'ECA236G4188' => 'eca', 'ECA240G0936' => 'eca', 'ECA240G1129' => 'eca', 'ECA247G0623' => 'eca', 'EL10Ac5g10451' => 'bvu', 'EL10Ac5g10453' => 'bvu', 'EL10Ac5g10894' => 'bvu', 'Eucgr.H00192' => 'egr', 'Eucgr.H00193' => 'egr', 'Eucgr.H00194' => 'egr', 'Eucgr.J01562' => 'egr', 'Eucgr.K03301' => 'egr', 'FAN02G0632' => 'fan', 'FAN05G5378' => 'fan', 'FAN09G3247' => 'fan', 'FAN12G0435' => 'fan', 'FAN12G2426' => 'fan', 'FAN14G1707' => 'fan', 'FAN14G4725' => 'fan', 'FAN15G2071' => 'fan', 'FAN17G3065' => 'fan', 'FAN19G1376' => 'fan', 'FAN20G0354' => 'fan', 'FAN20G2429' => 'fan', 'FAN20G2658' => 'fan', 'FAN24G2343' => 'fan', 'FAN27G2362' => 'fan', 'FAN28G1765' => 'fan', 'FvH4_1g16020' => 'fve', 'FvH4_2g04890' => 'fve', 'FvH4_2g22270' => 'fve', 'FvH4_4g02630' => 'fve', 'FvH4_4g02640' => 'fve', 'FvH4_6g02650' => 'fve', 'Glyma.02G140600' => 'gma', 'Glyma.03G159900' => 'gma', 'Glyma.05G234800' => 'gma', 'Glyma.07G269600' => 'gma', 'Glyma.08G042300' => 'gma', 'Glyma.10G033500' => 'gma', 'Glyma.10G185200' => 'gma', 'Glyma.17G004300' => 'gma', 'Glyma.19G161900' => 'gma', 'Glyma.20G205100' => 'gma', 'Glyma.20G205200' => 'gma', 'Gohir.A01G139101' => 'ghi', 'Gohir.A02G035600' => 'ghi', 'Gohir.A02G117901' => 'ghi', 'Gohir.A07G210100' => 'ghi', 'Gohir.A07G210200' => 'ghi', 'Gohir.A08G061100' => 'ghi', 'Gohir.A09G223000' => 'ghi', 'Gohir.A09G223100' => 'ghi', 'Gohir.A10G113900' => 'ghi', 'Gohir.A10G114000' => 'ghi', 'Gohir.D02G042300' => 'ghi', 'Gohir.D07G216100' => 'ghi', 'Gohir.D07G216200' => 'ghi', 'Gohir.D08G070400' => 'ghi', 'Gohir.D09G225000' => 'ghi', 'Gohir.D09G225100' => 'ghi', 'Gohir.D10G152300' => 'ghi', 'Gohir.D10G153200' => 'ghi', 'Gohir.D11G133701' => 'ghi', 'Gorai.004G074100' => 'gra', 'Gorai.005G046800' => 'gra', 'Gorai.006G246500' => 'gra', 'Gorai.006G246600' => 'gra', 'Gorai.007G142900' => 'gra', 'Gorai.011G171000' => 'gra', 'Gorai.011G171100' => 'gra', 'Gorai.013G104300' => 'gra', 'Gorai.013G104400' => 'gra', 'GSVIVG01000754001' => 'vvi', 'GSVIVG01000756001' => 'vvi', 'GSVIVG01010903001' => 'vvi', 'GSVIVG01017623001' => 'vvi', 'GSVIVG01018113001' => 'vvi', 'GSVIVG01018116001' => 'vvi', 'GSVIVG01018118001' => 'vvi', 'HanXRQChr03g0076211' => 'han', 'HanXRQChr03g0092431' => 'han', 'HanXRQChr03g0092441' => 'han', 'HanXRQChr03g0092591' => 'han', 'HanXRQChr03g0092671' => 'han', 'HanXRQChr03g0092681' => 'han', 'HanXRQChr03g0092691' => 'han', 'HanXRQChr03g0092701' => 'han', 'HanXRQChr03g0092721' => 'han', 'HanXRQChr03g0092731' => 'han', 'HanXRQChr04g0113681' => 'han', 'HanXRQChr10g0281371' => 'han', 'HanXRQChr11g0337141' => 'han', 'HanXRQChr13g0424521' => 'han', 'HanXRQChr13g0424531' => 'han', 'HanXRQChr13g0424541' => 'han', 'HanXRQChr16g0498221' => 'han', 'Haze_04377' => 'cav', 'Haze_11298' => 'cav', 'Haze_24547' => 'cav', 'Haze_24550' => 'cav', 'Haze_26587' => 'cav', 'Hma1.2p1_0650F.1_g195410' => 'hma', 'Hma1.2p1_0893F.1_g233470' => 'hma', 'HPP92_006508' => 'vpl', 'HPP92_024780' => 'vpl', 'Hund02688' => 'sun', 'Hund09380' => 'sun', 'Hund09381' => 'sun', 'Hund09832' => 'sun', 'Hund09833' => 'sun', 'Hund11351' => 'sun', 'Hund11513' => 'sun', 'Lalb_Chr06g0162591' => 'lal', 'Lalb_Chr06g0162601' => 'lal', 'Lalb_Chr06g0169321' => 'lal', 'Lalb_Chr09g0330951' => 'lal', 'Lalb_Chr16g0387631' => 'lal', 'Lalb_Chr21g0306241' => 'lal', 'Lalb_Chr25g0290051' => 'lal', 'Lalb_Chr25g0290061' => 'lal', 'Lalb_Chr25g0290071' => 'lal', 'Lj1g0003876' => 'lja', 'Lj1P1207T36' => 'lonja', 'Lj2C1156G12' => 'lonja', 'Lj3A793G39' => 'lonja', 'Lj3C580G2' => 'lonja', 'Lj3C780G2' => 'lonja', 'Lj3C780T4' => 'lonja', 'Lj3C793G9' => 'lonja', 'Lj4g0012960' => 'lja', 'Lj5g0021252' => 'lja', 'Lj5g0021484' => 'lja', 'Lj5g0024528' => 'lja', 'Lj6A399T12' => 'lonja', 'Lj6A656G65' => 'lonja', 'Lsat_1_v5_gn_3_125500' => 'lsa', 'Lsat_1_v5_gn_3_125540' => 'lsa', 'Lsat_1_v5_gn_5_72701' => 'lsa', 'Lsat_1_v5_gn_8_91560' => 'lsa', 'Lsat_1_v5_gn_9_9640' => 'lsa', 'Manes.01G200600' => 'mes', 'Manes.01G200700' => 'mes', 'Manes.03G168900' => 'mes', 'Manes.03G169000' => 'mes', 'Manes.05G085801' => 'mes', 'Manes.05G086200' => 'mes', 'Manes.15G036700' => 'mes', 'Manes.15G036900' => 'mes', 'Mapoly0004s0172' => 'mpo', 'Mapoly0023s0001' => 'mpo', 'Mapoly0142s0012' => 'mpo', 'MBI01_g32854_MAGBIO' => 'mbi', 'MBI11_g24427_MAGBIO' => 'mbi', 'MBI11_g47319_MAGBIO' => 'mbi', 'MCO01G433' => 'mco', 'MD00G1187800' => 'mdo', 'MD04G1226500' => 'mdo', 'MD05G1203900' => 'mdo', 'MD10G1191100' => 'mdo', 'MD12G1243500' => 'mdo', 'MD13G1207000' => 'mdo', 'MD13G1207100' => 'mdo', 'MD16G1208600' => 'mdo', 'Medtr1g050352' => 'mtr', 'Medtr1g070385' => 'mtr', 'Medtr1g070450' => 'mtr', 'Medtr1g075200' => 'mtr', 'Medtr1g075250' => 'mtr', 'Medtr1g075260' => 'mtr', 'Medtr1g475250' => 'mtr', 'Medtr4g075450' => 'mtr', 'Medtr7g096300' => 'mtr', 'Medtr8g105110' => 'mtr', 'MELO3C006470.2' => 'cme', 'MELO3C006471.2' => 'cme', 'MELO3C020772.2' => 'cme', 'MELO3C026780.2' => 'cme', 'MELO3C026781.2' => 'cme', 'Migut.D00390' => 'egut', 'Migut.G00435' => 'egut', 'Migut.G00436' => 'egut', 'Migut.G00718' => 'egut', 'MSTRG.21891' => 'ama', 'MSTRG.26910' => 'ama', 'MSTRG.4099' => 'ama', 'MSTRG.9925' => 'ama', 'Nitab4.5_0000165g0010' => 'nta', 'Nitab4.5_0000209g0180' => 'nta', 'Nitab4.5_0000244g0440' => 'nta', 'Nitab4.5_0000525g0220' => 'nta', 'Nitab4.5_0001597g0020' => 'nta', 'Nitab4.5_0001878g0040' => 'nta', 'Nitab4.5_0001878g0060' => 'nta', 'Nitab4.5_0002838g0100' => 'nta', 'Nitab4.5_0002838g0120' => 'nta', 'Nitab4.5_0004798g0030' => 'nta', 'Nitab4.5_0005420g0010' => 'nta', 'Nitab4.5_0005507g0010' => 'nta', 'Nitab4.5_0005574g0020' => 'nta', 'Nitab4.5_0005838g0010' => 'nta', 'Nitab4.5_0010580g0020' => 'nta', 'Nn1g02599' => 'nnu', 'Nn1g02608' => 'nnu', 'Nn3g17742' => 'nnu', 'Nn3g19534' => 'nnu', 'Nn3g19535' => 'nnu', 'Oeu008790.1' => 'oeu', 'Oeu008792.1' => 'oeu', 'Oeu032590.1' => 'oeu', 'Oeu035349.1' => 'oeu', 'Oeu049791.1' => 'oeu', 'Os01g0774500' => 'osa', 'Os03g0628800' => 'osa', 'Os03g0798600' => 'osa', 'Os05g0508800' => 'osa', 'Peaxi162Scf00036g02018' => 'pax', 'Peaxi162Scf00578g00032' => 'pax', 'Peaxi162Scf00578g00317' => 'pax', 'Peaxi162Scf00785g00114' => 'pax', 'Peaxi162Scf00813g00119' => 'pax', 'Peaxi162Scf00906g00227' => 'pax', 'PGR004G0875' => 'pgr', 'PGR004G2424' => 'pgr', 'PGR031G1239' => 'pgr', 'PGR031G2474' => 'pgr', 'PGR044G0423' => 'pgr', 'PGSC0003DMG400001128' => 'stu', 'PGSC0003DMG400007336' => 'stu', 'PGSC0003DMG400016318' => 'stu', 'PGSC0003DMG400016319' => 'stu', 'PGSC0003DMG400018074' => 'stu', 'Phvul.001G157700' => 'pvu', 'Phvul.002G148550' => 'pvu', 'Phvul.002G320200' => 'pvu', 'Phvul.003G089200' => 'pvu', 'Phvul.007G126000' => 'pvu', 'Phvul.007G126100' => 'pvu', 'Phvul.007G178000' => 'pvu', 'Phvul.007G178200' => 'pvu', 'Potri.002G043000' => 'ptr', 'Potri.002G043200' => 'ptr', 'Potri.003G123750' => 'ptr', 'Potri.005G055401' => 'ptr', 'Potri.005G219700' => 'ptr', 'Potri.005G220000' => 'ptr', 'Potri.008G161901' => 'ptr', 'Potri.008G162000' => 'ptr', 'Potri.008G162400' => 'ptr', 'Potri.010G076900' => 'ptr', 'Pp3c12_9180' => 'ppa', 'Pp3c13_19770' => 'ppa', 'Pp3c14_22950' => 'ppa', 'Pp3c16_12160' => 'ppa', 'Pp3c27_7820' => 'ppa', 'Pp3c2_3490' => 'ppa', 'Pp3c3_23700' => 'ppa', 'Pp3c3_36520' => 'ppa', 'Pp3c4_15250' => 'ppa', 'PRCOL_00007002' => 'pco', 'Prupe.1G030600' => 'ppe', 'Prupe.1G030700' => 'ppe', 'Prupe.6G345200' => 'ppe', 'Prupe.8G230300' => 'ppe', 'Prupe.8G230500' => 'ppe', 'Psat3g059600' => 'psa', 'Psat5g200920' => 'psa', 'Psat6g056440' => 'psa', 'Psat6g057360' => 'psa', 'Psat6g134120' => 'psa', 'Psat6g134160' => 'psa', 'Psat7g008640' => 'psa', 'Psat7g185240' => 'psa', 'PSO017G1330' => 'pso', 'PSO063G6097' => 'pso', 'PSO170G0835' => 'pso', 'PSO170G2499' => 'pso', 'PSO210G5058' => 'pso', 'PSO210G6154' => 'pso', 'PSO585G0031' => 'pso', 'PSO832G0264' => 'pso', 'PSO832G4288' => 'pso', 'QL03p027355' => 'qlo', 'QL03p027430' => 'qlo', 'QL04p081380' => 'qlo', 'QL06p015642' => 'qlo', 'QL06p015650' => 'qlo', 'QL06p015686' => 'qlo', 'QL12p042927' => 'qlo', 'QL93p1863_0035' => 'qlo', 'RcHm_v2.0_Chr3g0450581' => 'rch', 'RcHm_v2.0_Chr4g0390371' => 'rch', 'RcHm_v2.0_Chr4g0390381' => 'rch', 'RcHm_v2.0_Chr4g0390491' => 'rch', 'RcHm_v2.0_Chr4g0390501' => 'rch', 'RcHm_v2.0_Chr6g0289231' => 'rch', 'Rhsim04G0190400' => 'rsi', 'Rhsim04G0190500' => 'rsi', 'Rhsim04G0190600' => 'rsi', 'Rhsim13G0031400' => 'rsi', 'Rhsim13G0165600' => 'rsi', 'RhsimUnG0114600' => 'rsi', 'RhsimUnG0114700' => 'rsi', 'Sabra02G0034800' => 'sbr', 'Sabra02G0035100' => 'sbr', 'Sabra05G0168600' => 'sbr', 'Sabra05G0168800' => 'sbr', 'Sabra08G0123700' => 'sbr', 'Sabra10G0031900' => 'sbr', 'Sabra13G0039000' => 'sbr', 'SalBow2G0782' => 'sbo', 'SalBow2G1403' => 'sbo', 'SalBow4G0074' => 'sbo', 'SalBow4G2635' => 'sbo', 'SalBow5G3010' => 'sbo', 'Sc05g0000870' => 'sci', 'Sc05g0000890' => 'sci', 'Sc13g0005000' => 'sci', 'Sc13g0005030' => 'sci', 'Sc19g0003790' => 'sci', 'Sc19g0003800' => 'sci', 'Sed0003467' => 'sed', 'Sed0009355' => 'sed', 'Sed0009894' => 'sed', 'Sed0011972' => 'sed', 'Sed0021483' => 'sed', 'Sed0021750' => 'sed', 'Sed0026279' => 'sed', 'SEGI_05312' => 'sgi', 'SEGI_10112' => 'sgi', 'SEGI_15835' => 'sgi', 'SEGI_30386' => 'sgi', 'SEGI_34122' => 'sgi', 'SEGI_35063' => 'sgi', 'SGA_v2.0_scaffold101G29794' => 'sas', 'SGA_v2.0_scaffold1G00573' => 'sas', 'SGA_v2.0_scaffold79G25637' => 'sas', 'SGA_v2.0_scaffold88G27283' => 'sas', 'SGA_v2.0_scaffold88G27285' => 'sas', 'SGA_v2.0_scaffold88G27331' => 'sas', 'SHI09937' => 'shi', 'SMO119G0302' => 'smo', 'SMO137G0231' => 'smo', 'SMO367G1151' => 'smo', 'Solyc02g082000.3' => 'sly', 'Solyc06g031670.3' => 'sly', 'Solyc06g053810.3' => 'sly', 'Solyc07g025457.1' => 'sly', 'Solyc08g059740.1' => 'sly', 'Solyc08g059750.3' => 'sly', 'Solyc09g083370.3' => 'sly', 'Solyc12g038950.3' => 'sly', 'Sopen02g026630' => 'spe', 'Sopen06g018930' => 'spe', 'Sopen06g018940' => 'spe', 'Sopen08g009460' => 'spe', 'Sopen09g032290' => 'spe', 'Sp1g03080' => 'spa', 'Sp1g03090' => 'spa', 'Sp1g05480' => 'spa', 'Sp2g07860' => 'spa', 'Sp2g08430' => 'spa', 'Sp2g08440' => 'spa', 'Sp2g26200' => 'spa', 'Sp4g13170' => 'spa', 'Sp6g33840' => 'spa', 'SpUn1204_0010' => 'spa', 'TAR365G0908' => 'tar', 'TAR381G1270' => 'tar', 'TAR381G1651' => 'tar', 'TAR625G1131' => 'tar', 'TAR633G0962' => 'tar', 'TAR633G1729' => 'tar', 'TAR633G1864' => 'tar', 'TAR636G0221' => 'tar', 'TAR636G0314' => 'tar', 'TAR636G3202' => 'tar', 'THA.LOC104800805' => 'tha', 'THA.LOC104801096' => 'tha', 'THA.LOC104801555' => 'tha', 'THA.LOC104808491' => 'tha', 'THA.LOC104808595' => 'tha', 'THA.LOC104815985' => 'tha', 'THA.LOC104822250' => 'tha', 'THA.LOC104826071' => 'tha', 'Thecc.01G265200' => 'tca', 'Thecc.01G265300' => 'tca', 'Thecc.01G265700' => 'tca', 'Thecc.03G109100' => 'tca', 'Thecc.04G245900' => 'tca', 'Thecc.04G246000' => 'tca', 'Thhalv10003334m.g' => 'esa', 'Thhalv10005508m.g' => 'esa', 'Thhalv10005643m.g' => 'esa', 'Thhalv10007316m.g' => 'esa', 'Thhalv10009006m.g' => 'esa', 'Thhalv10009309m.g' => 'esa', 'Thhalv10014917m.g' => 'esa', 'Thhalv10014919m.g' => 'esa', 'Thhalv10015393m.g' => 'esa', 'Thhalv10016515m.g' => 'esa', 'Thhalv10029242m.g' => 'esa', 'TPR.G16654' => 'tpr', 'TPR.G20589' => 'tpr', 'TPR.G23029' => 'tpr', 'TPR.G27731' => 'tpr', 'TPR.G28889' => 'tpr', 'TPR.G28899' => 'tpr', 'TPR.G30846' => 'tpr', 'TPR.G5452' => 'tpr', 'TPR.G5713' => 'tpr', 'TPR.G9046' => 'tpr', 'TPR.G9061' => 'tpr', 'TWI09G1075' => 'twi', 'TWI12G0806' => 'twi', 'TWI18G0108' => 'twi', 'TWI53G1361' => 'twi', 'TWI73G0185' => 'twi', 'TWI73G0427' => 'twi', 'unitig_37.g12001' => 'ugi', 'unitig_747.g21660' => 'ugi', 'unitig_748.g7232' => 'ugi', 'unitig_748.g7315' => 'ugi', 'unitig_85.g27262' => 'ugi', 'unitig_92.g28220' => 'ugi', 'vmacro02632' => 'vma', 'vmacro08410' => 'vma', 'vmacro08411' => 'vma', 'vmacro15407' => 'vma', 'VMungo0251G3619' => 'vmu', 'VMungo0720G1204' => 'vmu', 'VMungo0720G1918' => 'vmu', 'VMungo0720G2387' => 'vmu', 'VMungo0720G2961' => 'vmu', 'VMungo1215G2154' => 'vmu', 'VMungo1383G2411' => 'vmu', 'Zm00001eb051130' => 'zma', 'Zm00001eb116830' => 'zma', 'Zm00001eb116850' => 'zma', 'Zm00001eb151740' => 'zma', 'Zm00001eb292360' => 'zma', 'Zm00001eb301640' => 'zma' ) $gf_id = 'HOM05D000856' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000856' ) $data_identifier = 'HOM05D000856' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 13, 'ath' => (int) 10, 'atr' => (int) 1, 'acertr' => (int) 8, 'cqu' => (int) 6, 'bca' => (int) 21, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 11, 'car' => (int) 9, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 8, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 5, 'fan' => (int) 16, 'fve' => (int) 6, 'gma' => (int) 11, 'ghi' => (int) 19, 'gra' => (int) 9, 'vvi' => (int) 7, 'han' => (int) 17, 'cav' => (int) 5, 'hma' => (int) 2, 'vpl' => (int) 2, 'sun' => (int) 7, 'lal' => (int) 9, 'lja' => (int) 5, 'lonja' => (int) 9, 'lsa' => (int) 5, 'mes' => (int) 8, 'mpo' => (int) 3, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 10, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 15, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 9, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 9, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 6, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 5, 'spa' => (int) 10, 'tar' => (int) 10, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 11, 'tpr' => (int) 11, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 4, 'vmu' => (int) 7, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb301640' $species_info = array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ) $local_species = 'eca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000856', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p00010' => 'bna', 'A03p04160' => 'bna', 'A03p17160' => 'bna', 'A04p23370' => 'bna', 'A05p14860' => 'bna', 'A08p37020' => 'bna', 'A09p08050' => 'bna', 'A09p66800' => 'bna', 'A09p67940' => 'bna', 'A10p02680' => 'bna', 'A10p05320' => 'bna', 'Aa31LG1G20560' => 'aar', 'Aa31LG1G20610' => 'aar', 'Aa31LG1G7810' => 'aar', 'Aa31LG5G3590' => 'aar', 'Aa31LG5G6140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3819' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4683' => 'aag', 'Actinidia04480' => 'ach', 'Actinidia05466' => 'ach', 'Actinidia08445' => 'ach', 'Actinidia21170' => 'ach', 'Actinidia24812' => 'ach', 'Actinidia24951' => 'ach', 'Actinidia40088' => 'ach', 'Ah.02g111660' => 'amhyb', 'Ah.11g048900' => 'amhyb', 'Ah.11g049910' => 'amhyb', 'AL1G13870' => 'aly', 'AL1G13880' => 'aly', 'AL1G16760' => 'aly', 'AL390U10020' => 'aly', 'AL4G25520' => 'aly', 'AL6G19890' => 'aly', 'AL6G19900' => 'aly', 'AL6G19910' => 'aly', 'AL8G40100' => 'aly', 'Aqoxy2G03562' => 'aox', 'Aqoxy5G00316' => 'aox', 'Aqoxy5G00926' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1628KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1H403S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2FU6SJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.882I6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8YRY2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YN1SN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AF70II' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZA8L1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F916KL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHRD8H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KTZ8QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S22EMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8M29T' => 'arhy', 'AT1G04270' => 'ath', 'AT1G04280' => 'ath', 'AT1G06750' => 'ath', 'AT1G33850' => 'ath', 'AT2G30630' => 'ath', 'AT5G09490' => 'ath', 'AT5G09500' => 'ath', 'AT5G09510' => 'ath', 'AT5G43640' => 'ath', 'AT5G63070' => 'ath', 'ATR0605G315' => 'atr', 'Atru.chr11.175' => 'acertr', 'Atru.chr11.653' => 'acertr', 'Atru.chr3.1616' => 'acertr', 'Atru.chr4.2230' => 'acertr', 'Atru.chr4.2232' => 'acertr', 'Atru.chr5.1598' => 'acertr', 'Atru.chr5.1600' => 'acertr', 'Atru.chr5.2188' => 'acertr', 'AUR62008326' => 'cqu', 'AUR62011922' => 'cqu', 'AUR62011924' => 'cqu', 'AUR62021771' => 'cqu', 'AUR62032237' => 'cqu', 'AUR62032240' => 'cqu', 'BcaB01g05572' => 'bca', 'BcaB02g10337' => 'bca', 'BcaB04g19944' => 'bca', 'BcaB05g21548' => 'bca', 'BcaB05g21549' => 'bca', 'BcaB05g23227' => 'bca', 'BcaB06g26256' => 'bca', 'BcaB06g26257' => 'bca', 'BcaB06g28379' => 'bca', 'BcaC02g11159' => 'bca', 'BcaC03g13258' => 'bca', 'BcaC03g13259' => 'bca', 'BcaC05g24456' => 'bca', 'BcaC05g24457' => 'bca', 'BcaC07g36922' => 'bca', 'BcaC07g36923' => 'bca', 'BcaC07g42050' => 'bca', 'BcaC07g42176' => 'bca', 'BcaC07g42195' => 'bca', 'BcaC07g42196' => 'bca', 'BcaNung06674' => 'bca', 'BolC2t06351H' => 'bol', 'BolC2t06352H' => 'bol', 'BolC3t12993H' => 'bol', 'BolC4t23525H' => 'bol', 'BolC4t27475H' => 'bol', 'BolC5t29025H' => 'bol', 'BolC5t29026H' => 'bol', 'BolC8t46898H' => 'bol', 'BolC8t46899H' => 'bol', 'BolC8t52630H' => 'bol', 'BolC8t52765H' => 'bol', 'BolC9t53824H' => 'bol', 'BraA03t09760Z' => 'bra', 'BraA03t10990Z' => 'bra', 'BraA05t20413Z' => 'bra', 'BraA08t35602Z' => 'bra', 'BraA09t36458Z' => 'bra', 'BraA09t42018Z' => 'bra', 'BraA09t42129Z' => 'bra', 'BraA10t42536Z' => 'bra', 'BraA10t42537Z' => 'bra', 'C01p10690' => 'bna', 'C02p03890' => 'bna', 'C02p03900' => 'bna', 'C03p04620' => 'bna', 'C04p19870' => 'bna', 'C04p59670' => 'bna', 'C05p02460' => 'bna', 'C05p02470' => 'bna', 'C08p00980' => 'bna', 'C08p00990' => 'bna', 'C08p51030' => 'bna', 'C08p52360' => 'bna', 'C09p09120' => 'bna', 'CAN.G19.15' => 'can', 'CAN.G251.10' => 'can', 'CAN.G251.9' => 'can', 'CAN.G398.24' => 'can', 'CAN.G410.32' => 'can', 'CAN.G881.2' => 'can', 'CANSAT01G3025' => 'cansat', 'CANSAT78G1211' => 'cansat', 'CANSAT78G1218' => 'cansat', 'CANSAT78G1521' => 'cansat', 'CANSAT78G1670' => 'cansat', 'CARHR003600' => 'chi', 'CARHR003610' => 'chi', 'CARHR006290' => 'chi', 'CARHR006430' => 'chi', 'CARHR124110' => 'chi', 'CARHR203870' => 'chi', 'CARHR203880' => 'chi', 'CARHR203890' => 'chi', 'CARHR276880' => 'chi', 'Carub.0001s0346' => 'cru', 'Carub.0001s0347' => 'cru', 'Carub.0001s0607' => 'cru', 'Carub.0003s2768' => 'cru', 'Carub.0003s2769' => 'cru', 'Carub.0004s1178' => 'cru', 'Carub.0006s0806' => 'cru', 'Carub.0006s0807' => 'cru', 'Carub.0006s0808' => 'cru', 'Carub.0008s0501' => 'cru', 'Carub.0008s2379' => 'cru', 'Ca_08655_v3' => 'car', 'Ca_08922_v3' => 'car', 'Ca_08923_v3' => 'car', 'Ca_09119_v3' => 'car', 'Ca_09703_v3' => 'car', 'Ca_09705_v3' => 'car', 'Ca_09835_v3' => 'car', 'Ca_26403_v3' => 'car', 'Ca_30719_v3' => 'car', 'CBR_g17958' => 'cbr', 'CBR_g40516' => 'cbr', 'Cc00_g05350' => 'ccan', 'Cc01_g18690' => 'ccan', 'Cc03_g04830' => 'ccan', 'Cc03_g04850' => 'ccan', 'CDE02G4469' => 'cde', 'CDE06G0883' => 'cde', 'CDE06G1295' => 'cde', 'CDE06G1390' => 'cde', 'CDE07G0584' => 'cde', 'CDE07G1084' => 'cde', 'CDE08G1259' => 'cde', 'Cfa002341' => 'cfa', 'Cfa024337' => 'cfa', 'Ciclev10004749m.g' => 'ccl', 'Ciclev10006127m.g' => 'ccl', 'Ciclev10019720m.g' => 'ccl', 'Ciclev10022652m.g' => 'ccl', 'CiPaw.01G190400' => 'cil', 'CiPaw.01G190500' => 'cil', 'CiPaw.02G116400' => 'cil', 'CiPaw.02G116500' => 'cil', 'CiPaw.04G183000' => 'cil', 'CiPaw.04G183300' => 'cil', 'ClCG05G004610' => 'cla', 'ClCG05G004620' => 'cla', 'ClCG06G006730' => 'cla', 'ClCG06G006740' => 'cla', 'ClCG11G003690' => 'cla', 'COL.COLO4_08276' => 'col', 'COL.COLO4_08277' => 'col', 'COL.COLO4_15787' => 'col', 'COL.COLO4_15789' => 'col', 'Cpa.g.c44815' => 'cpa', 'Cpa.g.sc52.144' => 'cpa', 'Cpa.g.sc58.46' => 'cpa', 'Cpa.g.sc58.47' => 'cpa', 'Cre08.g360900' => 'cre', 'CsaV3_2G013030' => 'csa', 'CsaV3_2G013050' => 'csa', 'CsaV3_2G015620' => 'csa', 'CsaV3_3G012590' => 'csa', 'CsaV3_3G012600' => 'csa', 'CSS0001641' => 'camsi', 'CSS0008310' => 'camsi', 'CSS0013011' => 'camsi', 'CSS0017147' => 'camsi', 'CSS0022970' => 'camsi', 'CSS0025655' => 'camsi', 'CSS0028665' => 'camsi', 'CSS0029117' => 'camsi', 'CSS0032024' => 'camsi', 'CSS0039681' => 'camsi', 'CSS0046516' => 'camsi', 'CSS0050307' => 'camsi', 'DCAR_005871' => 'dca', 'DCAR_007342' => 'dca', 'DCAR_024228' => 'dca', 'DCAR_027277' => 'dca', 'DCAR_030718' => 'dca', 'Dinv20287' => 'din', 'Dinv22461' => 'din', 'Dinv22464' => 'din', 'Dinv29912' => 'din', 'Dinv29913' => 'din', 'Dinv34580' => 'din', 'Dinv34582' => 'din', 'Dinv44632' => 'din', 'Duzib052G0266' => 'dzi', 'Duzib133G0907' => 'dzi', 'Duzib133G1034' => 'dzi', 'Duzib138G0207' => 'dzi', 'Duzib138G0491' => 'dzi', 'Duzib151G0812' => 'dzi', 'Duzib151G1166' => 'dzi', 'Duzib168G0192' => 'dzi', 'Duzib211G0077' => 'dzi', 'Duzib212G0429' => 'dzi', 'Duzib212G0472' => 'dzi', 'ECA233G2617' => 'eca', 'ECA236G4188' => 'eca', 'ECA240G0936' => 'eca', 'ECA240G1129' => 'eca', 'ECA247G0623' => 'eca', 'EL10Ac5g10451' => 'bvu', 'EL10Ac5g10453' => 'bvu', 'EL10Ac5g10894' => 'bvu', 'Eucgr.H00192' => 'egr', 'Eucgr.H00193' => 'egr', 'Eucgr.H00194' => 'egr', 'Eucgr.J01562' => 'egr', 'Eucgr.K03301' => 'egr', 'FAN02G0632' => 'fan', 'FAN05G5378' => 'fan', 'FAN09G3247' => 'fan', 'FAN12G0435' => 'fan', 'FAN12G2426' => 'fan', 'FAN14G1707' => 'fan', 'FAN14G4725' => 'fan', 'FAN15G2071' => 'fan', 'FAN17G3065' => 'fan', 'FAN19G1376' => 'fan', 'FAN20G0354' => 'fan', 'FAN20G2429' => 'fan', 'FAN20G2658' => 'fan', 'FAN24G2343' => 'fan', 'FAN27G2362' => 'fan', 'FAN28G1765' => 'fan', 'FvH4_1g16020' => 'fve', 'FvH4_2g04890' => 'fve', 'FvH4_2g22270' => 'fve', 'FvH4_4g02630' => 'fve', 'FvH4_4g02640' => 'fve', 'FvH4_6g02650' => 'fve', 'Glyma.02G140600' => 'gma', 'Glyma.03G159900' => 'gma', 'Glyma.05G234800' => 'gma', 'Glyma.07G269600' => 'gma', 'Glyma.08G042300' => 'gma', 'Glyma.10G033500' => 'gma', 'Glyma.10G185200' => 'gma', 'Glyma.17G004300' => 'gma', 'Glyma.19G161900' => 'gma', 'Glyma.20G205100' => 'gma', 'Glyma.20G205200' => 'gma', 'Gohir.A01G139101' => 'ghi', 'Gohir.A02G035600' => 'ghi', 'Gohir.A02G117901' => 'ghi', 'Gohir.A07G210100' => 'ghi', 'Gohir.A07G210200' => 'ghi', 'Gohir.A08G061100' => 'ghi', 'Gohir.A09G223000' => 'ghi', 'Gohir.A09G223100' => 'ghi', 'Gohir.A10G113900' => 'ghi', 'Gohir.A10G114000' => 'ghi', 'Gohir.D02G042300' => 'ghi', 'Gohir.D07G216100' => 'ghi', 'Gohir.D07G216200' => 'ghi', 'Gohir.D08G070400' => 'ghi', 'Gohir.D09G225000' => 'ghi', 'Gohir.D09G225100' => 'ghi', 'Gohir.D10G152300' => 'ghi', 'Gohir.D10G153200' => 'ghi', 'Gohir.D11G133701' => 'ghi', 'Gorai.004G074100' => 'gra', 'Gorai.005G046800' => 'gra', 'Gorai.006G246500' => 'gra', 'Gorai.006G246600' => 'gra', 'Gorai.007G142900' => 'gra', 'Gorai.011G171000' => 'gra', 'Gorai.011G171100' => 'gra', 'Gorai.013G104300' => 'gra', 'Gorai.013G104400' => 'gra', 'GSVIVG01000754001' => 'vvi', 'GSVIVG01000756001' => 'vvi', 'GSVIVG01010903001' => 'vvi', 'GSVIVG01017623001' => 'vvi', 'GSVIVG01018113001' => 'vvi', 'GSVIVG01018116001' => 'vvi', 'GSVIVG01018118001' => 'vvi', 'HanXRQChr03g0076211' => 'han', 'HanXRQChr03g0092431' => 'han', 'HanXRQChr03g0092441' => 'han', 'HanXRQChr03g0092591' => 'han', 'HanXRQChr03g0092671' => 'han', 'HanXRQChr03g0092681' => 'han', 'HanXRQChr03g0092691' => 'han', 'HanXRQChr03g0092701' => 'han', 'HanXRQChr03g0092721' => 'han', 'HanXRQChr03g0092731' => 'han', 'HanXRQChr04g0113681' => 'han', 'HanXRQChr10g0281371' => 'han', 'HanXRQChr11g0337141' => 'han', 'HanXRQChr13g0424521' => 'han', 'HanXRQChr13g0424531' => 'han', 'HanXRQChr13g0424541' => 'han', 'HanXRQChr16g0498221' => 'han', 'Haze_04377' => 'cav', 'Haze_11298' => 'cav', 'Haze_24547' => 'cav', 'Haze_24550' => 'cav', 'Haze_26587' => 'cav', 'Hma1.2p1_0650F.1_g195410' => 'hma', 'Hma1.2p1_0893F.1_g233470' => 'hma', 'HPP92_006508' => 'vpl', 'HPP92_024780' => 'vpl', 'Hund02688' => 'sun', 'Hund09380' => 'sun', 'Hund09381' => 'sun', 'Hund09832' => 'sun', 'Hund09833' => 'sun', 'Hund11351' => 'sun', 'Hund11513' => 'sun', 'Lalb_Chr06g0162591' => 'lal', 'Lalb_Chr06g0162601' => 'lal', 'Lalb_Chr06g0169321' => 'lal', 'Lalb_Chr09g0330951' => 'lal', 'Lalb_Chr16g0387631' => 'lal', 'Lalb_Chr21g0306241' => 'lal', 'Lalb_Chr25g0290051' => 'lal', 'Lalb_Chr25g0290061' => 'lal', 'Lalb_Chr25g0290071' => 'lal', 'Lj1g0003876' => 'lja', 'Lj1P1207T36' => 'lonja', 'Lj2C1156G12' => 'lonja', 'Lj3A793G39' => 'lonja', 'Lj3C580G2' => 'lonja', 'Lj3C780G2' => 'lonja', 'Lj3C780T4' => 'lonja', 'Lj3C793G9' => 'lonja', 'Lj4g0012960' => 'lja', 'Lj5g0021252' => 'lja', 'Lj5g0021484' => 'lja', 'Lj5g0024528' => 'lja', 'Lj6A399T12' => 'lonja', 'Lj6A656G65' => 'lonja', 'Lsat_1_v5_gn_3_125500' => 'lsa', 'Lsat_1_v5_gn_3_125540' => 'lsa', 'Lsat_1_v5_gn_5_72701' => 'lsa', 'Lsat_1_v5_gn_8_91560' => 'lsa', 'Lsat_1_v5_gn_9_9640' => 'lsa', 'Manes.01G200600' => 'mes', 'Manes.01G200700' => 'mes', 'Manes.03G168900' => 'mes', 'Manes.03G169000' => 'mes', 'Manes.05G085801' => 'mes', 'Manes.05G086200' => 'mes', 'Manes.15G036700' => 'mes', 'Manes.15G036900' => 'mes', 'Mapoly0004s0172' => 'mpo', 'Mapoly0023s0001' => 'mpo', 'Mapoly0142s0012' => 'mpo', 'MBI01_g32854_MAGBIO' => 'mbi', 'MBI11_g24427_MAGBIO' => 'mbi', 'MBI11_g47319_MAGBIO' => 'mbi', 'MCO01G433' => 'mco', 'MD00G1187800' => 'mdo', 'MD04G1226500' => 'mdo', 'MD05G1203900' => 'mdo', 'MD10G1191100' => 'mdo', 'MD12G1243500' => 'mdo', 'MD13G1207000' => 'mdo', 'MD13G1207100' => 'mdo', 'MD16G1208600' => 'mdo', 'Medtr1g050352' => 'mtr', 'Medtr1g070385' => 'mtr', 'Medtr1g070450' => 'mtr', 'Medtr1g075200' => 'mtr', 'Medtr1g075250' => 'mtr', 'Medtr1g075260' => 'mtr', 'Medtr1g475250' => 'mtr', 'Medtr4g075450' => 'mtr', 'Medtr7g096300' => 'mtr', 'Medtr8g105110' => 'mtr', 'MELO3C006470.2' => 'cme', 'MELO3C006471.2' => 'cme', 'MELO3C020772.2' => 'cme', 'MELO3C026780.2' => 'cme', 'MELO3C026781.2' => 'cme', 'Migut.D00390' => 'egut', 'Migut.G00435' => 'egut', 'Migut.G00436' => 'egut', 'Migut.G00718' => 'egut', 'MSTRG.21891' => 'ama', 'MSTRG.26910' => 'ama', 'MSTRG.4099' => 'ama', 'MSTRG.9925' => 'ama', 'Nitab4.5_0000165g0010' => 'nta', 'Nitab4.5_0000209g0180' => 'nta', 'Nitab4.5_0000244g0440' => 'nta', 'Nitab4.5_0000525g0220' => 'nta', 'Nitab4.5_0001597g0020' => 'nta', 'Nitab4.5_0001878g0040' => 'nta', 'Nitab4.5_0001878g0060' => 'nta', 'Nitab4.5_0002838g0100' => 'nta', 'Nitab4.5_0002838g0120' => 'nta', 'Nitab4.5_0004798g0030' => 'nta', 'Nitab4.5_0005420g0010' => 'nta', 'Nitab4.5_0005507g0010' => 'nta', 'Nitab4.5_0005574g0020' => 'nta', 'Nitab4.5_0005838g0010' => 'nta', 'Nitab4.5_0010580g0020' => 'nta', 'Nn1g02599' => 'nnu', 'Nn1g02608' => 'nnu', 'Nn3g17742' => 'nnu', 'Nn3g19534' => 'nnu', 'Nn3g19535' => 'nnu', 'Oeu008790.1' => 'oeu', 'Oeu008792.1' => 'oeu', 'Oeu032590.1' => 'oeu', 'Oeu035349.1' => 'oeu', 'Oeu049791.1' => 'oeu', 'Os01g0774500' => 'osa', 'Os03g0628800' => 'osa', 'Os03g0798600' => 'osa', 'Os05g0508800' => 'osa', 'Peaxi162Scf00036g02018' => 'pax', 'Peaxi162Scf00578g00032' => 'pax', 'Peaxi162Scf00578g00317' => 'pax', 'Peaxi162Scf00785g00114' => 'pax', 'Peaxi162Scf00813g00119' => 'pax', 'Peaxi162Scf00906g00227' => 'pax', 'PGR004G0875' => 'pgr', 'PGR004G2424' => 'pgr', 'PGR031G1239' => 'pgr', 'PGR031G2474' => 'pgr', 'PGR044G0423' => 'pgr', 'PGSC0003DMG400001128' => 'stu', 'PGSC0003DMG400007336' => 'stu', 'PGSC0003DMG400016318' => 'stu', 'PGSC0003DMG400016319' => 'stu', 'PGSC0003DMG400018074' => 'stu', 'Phvul.001G157700' => 'pvu', 'Phvul.002G148550' => 'pvu', 'Phvul.002G320200' => 'pvu', 'Phvul.003G089200' => 'pvu', 'Phvul.007G126000' => 'pvu', 'Phvul.007G126100' => 'pvu', 'Phvul.007G178000' => 'pvu', 'Phvul.007G178200' => 'pvu', 'Potri.002G043000' => 'ptr', 'Potri.002G043200' => 'ptr', 'Potri.003G123750' => 'ptr', 'Potri.005G055401' => 'ptr', 'Potri.005G219700' => 'ptr', 'Potri.005G220000' => 'ptr', 'Potri.008G161901' => 'ptr', 'Potri.008G162000' => 'ptr', 'Potri.008G162400' => 'ptr', 'Potri.010G076900' => 'ptr', 'Pp3c12_9180' => 'ppa', 'Pp3c13_19770' => 'ppa', 'Pp3c14_22950' => 'ppa', 'Pp3c16_12160' => 'ppa', 'Pp3c27_7820' => 'ppa', 'Pp3c2_3490' => 'ppa', 'Pp3c3_23700' => 'ppa', 'Pp3c3_36520' => 'ppa', 'Pp3c4_15250' => 'ppa', 'PRCOL_00007002' => 'pco', 'Prupe.1G030600' => 'ppe', 'Prupe.1G030700' => 'ppe', 'Prupe.6G345200' => 'ppe', 'Prupe.8G230300' => 'ppe', 'Prupe.8G230500' => 'ppe', 'Psat3g059600' => 'psa', 'Psat5g200920' => 'psa', 'Psat6g056440' => 'psa', 'Psat6g057360' => 'psa', 'Psat6g134120' => 'psa', 'Psat6g134160' => 'psa', 'Psat7g008640' => 'psa', 'Psat7g185240' => 'psa', 'PSO017G1330' => 'pso', 'PSO063G6097' => 'pso', 'PSO170G0835' => 'pso', 'PSO170G2499' => 'pso', 'PSO210G5058' => 'pso', 'PSO210G6154' => 'pso', 'PSO585G0031' => 'pso', 'PSO832G0264' => 'pso', 'PSO832G4288' => 'pso', 'QL03p027355' => 'qlo', 'QL03p027430' => 'qlo', 'QL04p081380' => 'qlo', 'QL06p015642' => 'qlo', 'QL06p015650' => 'qlo', 'QL06p015686' => 'qlo', 'QL12p042927' => 'qlo', 'QL93p1863_0035' => 'qlo', 'RcHm_v2.0_Chr3g0450581' => 'rch', 'RcHm_v2.0_Chr4g0390371' => 'rch', 'RcHm_v2.0_Chr4g0390381' => 'rch', 'RcHm_v2.0_Chr4g0390491' => 'rch', 'RcHm_v2.0_Chr4g0390501' => 'rch', 'RcHm_v2.0_Chr6g0289231' => 'rch', 'Rhsim04G0190400' => 'rsi', 'Rhsim04G0190500' => 'rsi', 'Rhsim04G0190600' => 'rsi', 'Rhsim13G0031400' => 'rsi', 'Rhsim13G0165600' => 'rsi', 'RhsimUnG0114600' => 'rsi', 'RhsimUnG0114700' => 'rsi', 'Sabra02G0034800' => 'sbr', 'Sabra02G0035100' => 'sbr', 'Sabra05G0168600' => 'sbr', 'Sabra05G0168800' => 'sbr', 'Sabra08G0123700' => 'sbr', 'Sabra10G0031900' => 'sbr', 'Sabra13G0039000' => 'sbr', 'SalBow2G0782' => 'sbo', 'SalBow2G1403' => 'sbo', 'SalBow4G0074' => 'sbo', 'SalBow4G2635' => 'sbo', 'SalBow5G3010' => 'sbo', 'Sc05g0000870' => 'sci', 'Sc05g0000890' => 'sci', 'Sc13g0005000' => 'sci', 'Sc13g0005030' => 'sci', 'Sc19g0003790' => 'sci', 'Sc19g0003800' => 'sci', 'Sed0003467' => 'sed', 'Sed0009355' => 'sed', 'Sed0009894' => 'sed', 'Sed0011972' => 'sed', 'Sed0021483' => 'sed', 'Sed0021750' => 'sed', 'Sed0026279' => 'sed', 'SEGI_05312' => 'sgi', 'SEGI_10112' => 'sgi', 'SEGI_15835' => 'sgi', 'SEGI_30386' => 'sgi', 'SEGI_34122' => 'sgi', 'SEGI_35063' => 'sgi', 'SGA_v2.0_scaffold101G29794' => 'sas', 'SGA_v2.0_scaffold1G00573' => 'sas', 'SGA_v2.0_scaffold79G25637' => 'sas', 'SGA_v2.0_scaffold88G27283' => 'sas', 'SGA_v2.0_scaffold88G27285' => 'sas', 'SGA_v2.0_scaffold88G27331' => 'sas', 'SHI09937' => 'shi', 'SMO119G0302' => 'smo', 'SMO137G0231' => 'smo', 'SMO367G1151' => 'smo', 'Solyc02g082000.3' => 'sly', 'Solyc06g031670.3' => 'sly', 'Solyc06g053810.3' => 'sly', 'Solyc07g025457.1' => 'sly', 'Solyc08g059740.1' => 'sly', 'Solyc08g059750.3' => 'sly', 'Solyc09g083370.3' => 'sly', 'Solyc12g038950.3' => 'sly', 'Sopen02g026630' => 'spe', 'Sopen06g018930' => 'spe', 'Sopen06g018940' => 'spe', 'Sopen08g009460' => 'spe', 'Sopen09g032290' => 'spe', 'Sp1g03080' => 'spa', 'Sp1g03090' => 'spa', 'Sp1g05480' => 'spa', 'Sp2g07860' => 'spa', 'Sp2g08430' => 'spa', 'Sp2g08440' => 'spa', 'Sp2g26200' => 'spa', 'Sp4g13170' => 'spa', 'Sp6g33840' => 'spa', 'SpUn1204_0010' => 'spa', 'TAR365G0908' => 'tar', 'TAR381G1270' => 'tar', 'TAR381G1651' => 'tar', 'TAR625G1131' => 'tar', 'TAR633G0962' => 'tar', 'TAR633G1729' => 'tar', 'TAR633G1864' => 'tar', 'TAR636G0221' => 'tar', 'TAR636G0314' => 'tar', 'TAR636G3202' => 'tar', 'THA.LOC104800805' => 'tha', 'THA.LOC104801096' => 'tha', 'THA.LOC104801555' => 'tha', 'THA.LOC104808491' => 'tha', 'THA.LOC104808595' => 'tha', 'THA.LOC104815985' => 'tha', 'THA.LOC104822250' => 'tha', 'THA.LOC104826071' => 'tha', 'Thecc.01G265200' => 'tca', 'Thecc.01G265300' => 'tca', 'Thecc.01G265700' => 'tca', 'Thecc.03G109100' => 'tca', 'Thecc.04G245900' => 'tca', 'Thecc.04G246000' => 'tca', 'Thhalv10003334m.g' => 'esa', 'Thhalv10005508m.g' => 'esa', 'Thhalv10005643m.g' => 'esa', 'Thhalv10007316m.g' => 'esa', 'Thhalv10009006m.g' => 'esa', 'Thhalv10009309m.g' => 'esa', 'Thhalv10014917m.g' => 'esa', 'Thhalv10014919m.g' => 'esa', 'Thhalv10015393m.g' => 'esa', 'Thhalv10016515m.g' => 'esa', 'Thhalv10029242m.g' => 'esa', 'TPR.G16654' => 'tpr', 'TPR.G20589' => 'tpr', 'TPR.G23029' => 'tpr', 'TPR.G27731' => 'tpr', 'TPR.G28889' => 'tpr', 'TPR.G28899' => 'tpr', 'TPR.G30846' => 'tpr', 'TPR.G5452' => 'tpr', 'TPR.G5713' => 'tpr', 'TPR.G9046' => 'tpr', 'TPR.G9061' => 'tpr', 'TWI09G1075' => 'twi', 'TWI12G0806' => 'twi', 'TWI18G0108' => 'twi', 'TWI53G1361' => 'twi', 'TWI73G0185' => 'twi', 'TWI73G0427' => 'twi', 'unitig_37.g12001' => 'ugi', 'unitig_747.g21660' => 'ugi', 'unitig_748.g7232' => 'ugi', 'unitig_748.g7315' => 'ugi', 'unitig_85.g27262' => 'ugi', 'unitig_92.g28220' => 'ugi', 'vmacro02632' => 'vma', 'vmacro08410' => 'vma', 'vmacro08411' => 'vma', 'vmacro15407' => 'vma', 'VMungo0251G3619' => 'vmu', 'VMungo0720G1204' => 'vmu', 'VMungo0720G1918' => 'vmu', 'VMungo0720G2387' => 'vmu', 'VMungo0720G2961' => 'vmu', 'VMungo1215G2154' => 'vmu', 'VMungo1383G2411' => 'vmu', 'Zm00001eb051130' => 'zma', 'Zm00001eb116830' => 'zma', 'Zm00001eb116850' => 'zma', 'Zm00001eb151740' => 'zma', 'Zm00001eb292360' => 'zma', 'Zm00001eb301640' => 'zma' ), 'gf_id' => 'HOM05D000856', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000856' ), 'data_identifier' => 'HOM05D000856', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000856', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p00010' => 'bna', 'A03p04160' => 'bna', 'A03p17160' => 'bna', 'A04p23370' => 'bna', 'A05p14860' => 'bna', 'A08p37020' => 'bna', 'A09p08050' => 'bna', 'A09p66800' => 'bna', 'A09p67940' => 'bna', 'A10p02680' => 'bna', 'A10p05320' => 'bna', 'Aa31LG1G20560' => 'aar', 'Aa31LG1G20610' => 'aar', 'Aa31LG1G7810' => 'aar', 'Aa31LG5G3590' => 'aar', 'Aa31LG5G6140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3819' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4683' => 'aag', 'Actinidia04480' => 'ach', 'Actinidia05466' => 'ach', 'Actinidia08445' => 'ach', 'Actinidia21170' => 'ach', 'Actinidia24812' => 'ach', 'Actinidia24951' => 'ach', 'Actinidia40088' => 'ach', 'Ah.02g111660' => 'amhyb', 'Ah.11g048900' => 'amhyb', 'Ah.11g049910' => 'amhyb', 'AL1G13870' => 'aly', 'AL1G13880' => 'aly', 'AL1G16760' => 'aly', 'AL390U10020' => 'aly', 'AL4G25520' => 'aly', 'AL6G19890' => 'aly', 'AL6G19900' => 'aly', 'AL6G19910' => 'aly', 'AL8G40100' => 'aly', 'Aqoxy2G03562' => 'aox', 'Aqoxy5G00316' => 'aox', 'Aqoxy5G00926' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1628KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1H403S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2FU6SJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.882I6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8YRY2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YN1SN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AF70II' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZA8L1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F916KL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHRD8H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KTZ8QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S22EMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8M29T' => 'arhy', 'AT1G04270' => 'ath', 'AT1G04280' => 'ath', 'AT1G06750' => 'ath', 'AT1G33850' => 'ath', 'AT2G30630' => 'ath', 'AT5G09490' => 'ath', 'AT5G09500' => 'ath', 'AT5G09510' => 'ath', 'AT5G43640' => 'ath', 'AT5G63070' => 'ath', 'ATR0605G315' => 'atr', 'Atru.chr11.175' => 'acertr', 'Atru.chr11.653' => 'acertr', 'Atru.chr3.1616' => 'acertr', 'Atru.chr4.2230' => 'acertr', 'Atru.chr4.2232' => 'acertr', 'Atru.chr5.1598' => 'acertr', 'Atru.chr5.1600' => 'acertr', 'Atru.chr5.2188' => 'acertr', 'AUR62008326' => 'cqu', 'AUR62011922' => 'cqu', 'AUR62011924' => 'cqu', 'AUR62021771' => 'cqu', 'AUR62032237' => 'cqu', 'AUR62032240' => 'cqu', 'BcaB01g05572' => 'bca', 'BcaB02g10337' => 'bca', 'BcaB04g19944' => 'bca', 'BcaB05g21548' => 'bca', 'BcaB05g21549' => 'bca', 'BcaB05g23227' => 'bca', 'BcaB06g26256' => 'bca', 'BcaB06g26257' => 'bca', 'BcaB06g28379' => 'bca', 'BcaC02g11159' => 'bca', 'BcaC03g13258' => 'bca', 'BcaC03g13259' => 'bca', 'BcaC05g24456' => 'bca', 'BcaC05g24457' => 'bca', 'BcaC07g36922' => 'bca', 'BcaC07g36923' => 'bca', 'BcaC07g42050' => 'bca', 'BcaC07g42176' => 'bca', 'BcaC07g42195' => 'bca', 'BcaC07g42196' => 'bca', 'BcaNung06674' => 'bca', 'BolC2t06351H' => 'bol', 'BolC2t06352H' => 'bol', 'BolC3t12993H' => 'bol', 'BolC4t23525H' => 'bol', 'BolC4t27475H' => 'bol', 'BolC5t29025H' => 'bol', 'BolC5t29026H' => 'bol', 'BolC8t46898H' => 'bol', 'BolC8t46899H' => 'bol', 'BolC8t52630H' => 'bol', 'BolC8t52765H' => 'bol', 'BolC9t53824H' => 'bol', 'BraA03t09760Z' => 'bra', 'BraA03t10990Z' => 'bra', 'BraA05t20413Z' => 'bra', 'BraA08t35602Z' => 'bra', 'BraA09t36458Z' => 'bra', 'BraA09t42018Z' => 'bra', 'BraA09t42129Z' => 'bra', 'BraA10t42536Z' => 'bra', 'BraA10t42537Z' => 'bra', 'C01p10690' => 'bna', 'C02p03890' => 'bna', 'C02p03900' => 'bna', 'C03p04620' => 'bna', 'C04p19870' => 'bna', 'C04p59670' => 'bna', 'C05p02460' => 'bna', 'C05p02470' => 'bna', 'C08p00980' => 'bna', 'C08p00990' => 'bna', 'C08p51030' => 'bna', 'C08p52360' => 'bna', 'C09p09120' => 'bna', 'CAN.G19.15' => 'can', 'CAN.G251.10' => 'can', 'CAN.G251.9' => 'can', 'CAN.G398.24' => 'can', 'CAN.G410.32' => 'can', 'CAN.G881.2' => 'can', 'CANSAT01G3025' => 'cansat', 'CANSAT78G1211' => 'cansat', 'CANSAT78G1218' => 'cansat', 'CANSAT78G1521' => 'cansat', 'CANSAT78G1670' => 'cansat', 'CARHR003600' => 'chi', 'CARHR003610' => 'chi', 'CARHR006290' => 'chi', 'CARHR006430' => 'chi', 'CARHR124110' => 'chi', 'CARHR203870' => 'chi', 'CARHR203880' => 'chi', 'CARHR203890' => 'chi', 'CARHR276880' => 'chi', 'Carub.0001s0346' => 'cru', 'Carub.0001s0347' => 'cru', 'Carub.0001s0607' => 'cru', 'Carub.0003s2768' => 'cru', 'Carub.0003s2769' => 'cru', 'Carub.0004s1178' => 'cru', 'Carub.0006s0806' => 'cru', 'Carub.0006s0807' => 'cru', 'Carub.0006s0808' => 'cru', 'Carub.0008s0501' => 'cru', 'Carub.0008s2379' => 'cru', 'Ca_08655_v3' => 'car', 'Ca_08922_v3' => 'car', 'Ca_08923_v3' => 'car', 'Ca_09119_v3' => 'car', 'Ca_09703_v3' => 'car', 'Ca_09705_v3' => 'car', 'Ca_09835_v3' => 'car', 'Ca_26403_v3' => 'car', 'Ca_30719_v3' => 'car', 'CBR_g17958' => 'cbr', 'CBR_g40516' => 'cbr', 'Cc00_g05350' => 'ccan', 'Cc01_g18690' => 'ccan', 'Cc03_g04830' => 'ccan', 'Cc03_g04850' => 'ccan', 'CDE02G4469' => 'cde', 'CDE06G0883' => 'cde', 'CDE06G1295' => 'cde', 'CDE06G1390' => 'cde', 'CDE07G0584' => 'cde', 'CDE07G1084' => 'cde', 'CDE08G1259' => 'cde', 'Cfa002341' => 'cfa', 'Cfa024337' => 'cfa', 'Ciclev10004749m.g' => 'ccl', 'Ciclev10006127m.g' => 'ccl', 'Ciclev10019720m.g' => 'ccl', 'Ciclev10022652m.g' => 'ccl', 'CiPaw.01G190400' => 'cil', 'CiPaw.01G190500' => 'cil', 'CiPaw.02G116400' => 'cil', 'CiPaw.02G116500' => 'cil', 'CiPaw.04G183000' => 'cil', 'CiPaw.04G183300' => 'cil', 'ClCG05G004610' => 'cla', 'ClCG05G004620' => 'cla', 'ClCG06G006730' => 'cla', 'ClCG06G006740' => 'cla', 'ClCG11G003690' => 'cla', 'COL.COLO4_08276' => 'col', 'COL.COLO4_08277' => 'col', 'COL.COLO4_15787' => 'col', 'COL.COLO4_15789' => 'col', 'Cpa.g.c44815' => 'cpa', 'Cpa.g.sc52.144' => 'cpa', 'Cpa.g.sc58.46' => 'cpa', 'Cpa.g.sc58.47' => 'cpa', 'Cre08.g360900' => 'cre', 'CsaV3_2G013030' => 'csa', 'CsaV3_2G013050' => 'csa', 'CsaV3_2G015620' => 'csa', 'CsaV3_3G012590' => 'csa', 'CsaV3_3G012600' => 'csa', 'CSS0001641' => 'camsi', 'CSS0008310' => 'camsi', 'CSS0013011' => 'camsi', 'CSS0017147' => 'camsi', 'CSS0022970' => 'camsi', 'CSS0025655' => 'camsi', 'CSS0028665' => 'camsi', 'CSS0029117' => 'camsi', 'CSS0032024' => 'camsi', 'CSS0039681' => 'camsi', 'CSS0046516' => 'camsi', 'CSS0050307' => 'camsi', 'DCAR_005871' => 'dca', 'DCAR_007342' => 'dca', 'DCAR_024228' => 'dca', 'DCAR_027277' => 'dca', 'DCAR_030718' => 'dca', 'Dinv20287' => 'din', 'Dinv22461' => 'din', 'Dinv22464' => 'din', 'Dinv29912' => 'din', 'Dinv29913' => 'din', 'Dinv34580' => 'din', 'Dinv34582' => 'din', 'Dinv44632' => 'din', 'Duzib052G0266' => 'dzi', 'Duzib133G0907' => 'dzi', 'Duzib133G1034' => 'dzi', 'Duzib138G0207' => 'dzi', 'Duzib138G0491' => 'dzi', 'Duzib151G0812' => 'dzi', 'Duzib151G1166' => 'dzi', 'Duzib168G0192' => 'dzi', 'Duzib211G0077' => 'dzi', 'Duzib212G0429' => 'dzi', 'Duzib212G0472' => 'dzi', 'ECA233G2617' => 'eca', 'ECA236G4188' => 'eca', 'ECA240G0936' => 'eca', 'ECA240G1129' => 'eca', 'ECA247G0623' => 'eca', 'EL10Ac5g10451' => 'bvu', 'EL10Ac5g10453' => 'bvu', 'EL10Ac5g10894' => 'bvu', 'Eucgr.H00192' => 'egr', 'Eucgr.H00193' => 'egr', 'Eucgr.H00194' => 'egr', 'Eucgr.J01562' => 'egr', 'Eucgr.K03301' => 'egr', 'FAN02G0632' => 'fan', 'FAN05G5378' => 'fan', 'FAN09G3247' => 'fan', 'FAN12G0435' => 'fan', 'FAN12G2426' => 'fan', 'FAN14G1707' => 'fan', 'FAN14G4725' => 'fan', 'FAN15G2071' => 'fan', 'FAN17G3065' => 'fan', 'FAN19G1376' => 'fan', 'FAN20G0354' => 'fan', 'FAN20G2429' => 'fan', 'FAN20G2658' => 'fan', 'FAN24G2343' => 'fan', 'FAN27G2362' => 'fan', 'FAN28G1765' => 'fan', 'FvH4_1g16020' => 'fve', 'FvH4_2g04890' => 'fve', 'FvH4_2g22270' => 'fve', 'FvH4_4g02630' => 'fve', 'FvH4_4g02640' => 'fve', 'FvH4_6g02650' => 'fve', 'Glyma.02G140600' => 'gma', 'Glyma.03G159900' => 'gma', 'Glyma.05G234800' => 'gma', 'Glyma.07G269600' => 'gma', 'Glyma.08G042300' => 'gma', 'Glyma.10G033500' => 'gma', 'Glyma.10G185200' => 'gma', 'Glyma.17G004300' => 'gma', 'Glyma.19G161900' => 'gma', 'Glyma.20G205100' => 'gma', 'Glyma.20G205200' => 'gma', 'Gohir.A01G139101' => 'ghi', 'Gohir.A02G035600' => 'ghi', 'Gohir.A02G117901' => 'ghi', 'Gohir.A07G210100' => 'ghi', 'Gohir.A07G210200' => 'ghi', 'Gohir.A08G061100' => 'ghi', 'Gohir.A09G223000' => 'ghi', 'Gohir.A09G223100' => 'ghi', 'Gohir.A10G113900' => 'ghi', 'Gohir.A10G114000' => 'ghi', 'Gohir.D02G042300' => 'ghi', 'Gohir.D07G216100' => 'ghi', 'Gohir.D07G216200' => 'ghi', 'Gohir.D08G070400' => 'ghi', 'Gohir.D09G225000' => 'ghi', 'Gohir.D09G225100' => 'ghi', 'Gohir.D10G152300' => 'ghi', 'Gohir.D10G153200' => 'ghi', 'Gohir.D11G133701' => 'ghi', 'Gorai.004G074100' => 'gra', 'Gorai.005G046800' => 'gra', 'Gorai.006G246500' => 'gra', 'Gorai.006G246600' => 'gra', 'Gorai.007G142900' => 'gra', 'Gorai.011G171000' => 'gra', 'Gorai.011G171100' => 'gra', 'Gorai.013G104300' => 'gra', 'Gorai.013G104400' => 'gra', 'GSVIVG01000754001' => 'vvi', 'GSVIVG01000756001' => 'vvi', 'GSVIVG01010903001' => 'vvi', 'GSVIVG01017623001' => 'vvi', 'GSVIVG01018113001' => 'vvi', 'GSVIVG01018116001' => 'vvi', 'GSVIVG01018118001' => 'vvi', 'HanXRQChr03g0076211' => 'han', 'HanXRQChr03g0092431' => 'han', 'HanXRQChr03g0092441' => 'han', 'HanXRQChr03g0092591' => 'han', 'HanXRQChr03g0092671' => 'han', 'HanXRQChr03g0092681' => 'han', 'HanXRQChr03g0092691' => 'han', 'HanXRQChr03g0092701' => 'han', 'HanXRQChr03g0092721' => 'han', 'HanXRQChr03g0092731' => 'han', 'HanXRQChr04g0113681' => 'han', 'HanXRQChr10g0281371' => 'han', 'HanXRQChr11g0337141' => 'han', 'HanXRQChr13g0424521' => 'han', 'HanXRQChr13g0424531' => 'han', 'HanXRQChr13g0424541' => 'han', 'HanXRQChr16g0498221' => 'han', 'Haze_04377' => 'cav', 'Haze_11298' => 'cav', 'Haze_24547' => 'cav', 'Haze_24550' => 'cav', 'Haze_26587' => 'cav', 'Hma1.2p1_0650F.1_g195410' => 'hma', 'Hma1.2p1_0893F.1_g233470' => 'hma', 'HPP92_006508' => 'vpl', 'HPP92_024780' => 'vpl', 'Hund02688' => 'sun', 'Hund09380' => 'sun', 'Hund09381' => 'sun', 'Hund09832' => 'sun', 'Hund09833' => 'sun', 'Hund11351' => 'sun', 'Hund11513' => 'sun', 'Lalb_Chr06g0162591' => 'lal', 'Lalb_Chr06g0162601' => 'lal', 'Lalb_Chr06g0169321' => 'lal', 'Lalb_Chr09g0330951' => 'lal', 'Lalb_Chr16g0387631' => 'lal', 'Lalb_Chr21g0306241' => 'lal', 'Lalb_Chr25g0290051' => 'lal', 'Lalb_Chr25g0290061' => 'lal', 'Lalb_Chr25g0290071' => 'lal', 'Lj1g0003876' => 'lja', 'Lj1P1207T36' => 'lonja', 'Lj2C1156G12' => 'lonja', 'Lj3A793G39' => 'lonja', 'Lj3C580G2' => 'lonja', 'Lj3C780G2' => 'lonja', 'Lj3C780T4' => 'lonja', 'Lj3C793G9' => 'lonja', 'Lj4g0012960' => 'lja', 'Lj5g0021252' => 'lja', 'Lj5g0021484' => 'lja', 'Lj5g0024528' => 'lja', 'Lj6A399T12' => 'lonja', 'Lj6A656G65' => 'lonja', 'Lsat_1_v5_gn_3_125500' => 'lsa', 'Lsat_1_v5_gn_3_125540' => 'lsa', 'Lsat_1_v5_gn_5_72701' => 'lsa', 'Lsat_1_v5_gn_8_91560' => 'lsa', 'Lsat_1_v5_gn_9_9640' => 'lsa', 'Manes.01G200600' => 'mes', 'Manes.01G200700' => 'mes', 'Manes.03G168900' => 'mes', 'Manes.03G169000' => 'mes', 'Manes.05G085801' => 'mes', 'Manes.05G086200' => 'mes', 'Manes.15G036700' => 'mes', 'Manes.15G036900' => 'mes', 'Mapoly0004s0172' => 'mpo', 'Mapoly0023s0001' => 'mpo', 'Mapoly0142s0012' => 'mpo', 'MBI01_g32854_MAGBIO' => 'mbi', 'MBI11_g24427_MAGBIO' => 'mbi', 'MBI11_g47319_MAGBIO' => 'mbi', 'MCO01G433' => 'mco', 'MD00G1187800' => 'mdo', 'MD04G1226500' => 'mdo', 'MD05G1203900' => 'mdo', 'MD10G1191100' => 'mdo', 'MD12G1243500' => 'mdo', 'MD13G1207000' => 'mdo', 'MD13G1207100' => 'mdo', 'MD16G1208600' => 'mdo', 'Medtr1g050352' => 'mtr', 'Medtr1g070385' => 'mtr', 'Medtr1g070450' => 'mtr', 'Medtr1g075200' => 'mtr', 'Medtr1g075250' => 'mtr', 'Medtr1g075260' => 'mtr', 'Medtr1g475250' => 'mtr', 'Medtr4g075450' => 'mtr', 'Medtr7g096300' => 'mtr', 'Medtr8g105110' => 'mtr', 'MELO3C006470.2' => 'cme', 'MELO3C006471.2' => 'cme', 'MELO3C020772.2' => 'cme', 'MELO3C026780.2' => 'cme', 'MELO3C026781.2' => 'cme', 'Migut.D00390' => 'egut', 'Migut.G00435' => 'egut', 'Migut.G00436' => 'egut', 'Migut.G00718' => 'egut', 'MSTRG.21891' => 'ama', 'MSTRG.26910' => 'ama', 'MSTRG.4099' => 'ama', 'MSTRG.9925' => 'ama', 'Nitab4.5_0000165g0010' => 'nta', 'Nitab4.5_0000209g0180' => 'nta', 'Nitab4.5_0000244g0440' => 'nta', 'Nitab4.5_0000525g0220' => 'nta', 'Nitab4.5_0001597g0020' => 'nta', 'Nitab4.5_0001878g0040' => 'nta', 'Nitab4.5_0001878g0060' => 'nta', 'Nitab4.5_0002838g0100' => 'nta', 'Nitab4.5_0002838g0120' => 'nta', 'Nitab4.5_0004798g0030' => 'nta', 'Nitab4.5_0005420g0010' => 'nta', 'Nitab4.5_0005507g0010' => 'nta', 'Nitab4.5_0005574g0020' => 'nta', 'Nitab4.5_0005838g0010' => 'nta', 'Nitab4.5_0010580g0020' => 'nta', 'Nn1g02599' => 'nnu', 'Nn1g02608' => 'nnu', 'Nn3g17742' => 'nnu', 'Nn3g19534' => 'nnu', 'Nn3g19535' => 'nnu', 'Oeu008790.1' => 'oeu', 'Oeu008792.1' => 'oeu', 'Oeu032590.1' => 'oeu', 'Oeu035349.1' => 'oeu', 'Oeu049791.1' => 'oeu', 'Os01g0774500' => 'osa', 'Os03g0628800' => 'osa', 'Os03g0798600' => 'osa', 'Os05g0508800' => 'osa', 'Peaxi162Scf00036g02018' => 'pax', 'Peaxi162Scf00578g00032' => 'pax', 'Peaxi162Scf00578g00317' => 'pax', 'Peaxi162Scf00785g00114' => 'pax', 'Peaxi162Scf00813g00119' => 'pax', 'Peaxi162Scf00906g00227' => 'pax', 'PGR004G0875' => 'pgr', 'PGR004G2424' => 'pgr', 'PGR031G1239' => 'pgr', 'PGR031G2474' => 'pgr', 'PGR044G0423' => 'pgr', 'PGSC0003DMG400001128' => 'stu', 'PGSC0003DMG400007336' => 'stu', 'PGSC0003DMG400016318' => 'stu', 'PGSC0003DMG400016319' => 'stu', 'PGSC0003DMG400018074' => 'stu', 'Phvul.001G157700' => 'pvu', 'Phvul.002G148550' => 'pvu', 'Phvul.002G320200' => 'pvu', 'Phvul.003G089200' => 'pvu', 'Phvul.007G126000' => 'pvu', 'Phvul.007G126100' => 'pvu', 'Phvul.007G178000' => 'pvu', 'Phvul.007G178200' => 'pvu', 'Potri.002G043000' => 'ptr', 'Potri.002G043200' => 'ptr', 'Potri.003G123750' => 'ptr', 'Potri.005G055401' => 'ptr', 'Potri.005G219700' => 'ptr', 'Potri.005G220000' => 'ptr', 'Potri.008G161901' => 'ptr', 'Potri.008G162000' => 'ptr', 'Potri.008G162400' => 'ptr', 'Potri.010G076900' => 'ptr', 'Pp3c12_9180' => 'ppa', 'Pp3c13_19770' => 'ppa', 'Pp3c14_22950' => 'ppa', 'Pp3c16_12160' => 'ppa', 'Pp3c27_7820' => 'ppa', 'Pp3c2_3490' => 'ppa', 'Pp3c3_23700' => 'ppa', 'Pp3c3_36520' => 'ppa', 'Pp3c4_15250' => 'ppa', 'PRCOL_00007002' => 'pco', 'Prupe.1G030600' => 'ppe', 'Prupe.1G030700' => 'ppe', 'Prupe.6G345200' => 'ppe', 'Prupe.8G230300' => 'ppe', 'Prupe.8G230500' => 'ppe', 'Psat3g059600' => 'psa', 'Psat5g200920' => 'psa', 'Psat6g056440' => 'psa', 'Psat6g057360' => 'psa', 'Psat6g134120' => 'psa', 'Psat6g134160' => 'psa', 'Psat7g008640' => 'psa', 'Psat7g185240' => 'psa', 'PSO017G1330' => 'pso', 'PSO063G6097' => 'pso', 'PSO170G0835' => 'pso', 'PSO170G2499' => 'pso', 'PSO210G5058' => 'pso', 'PSO210G6154' => 'pso', 'PSO585G0031' => 'pso', 'PSO832G0264' => 'pso', 'PSO832G4288' => 'pso', 'QL03p027355' => 'qlo', 'QL03p027430' => 'qlo', 'QL04p081380' => 'qlo', 'QL06p015642' => 'qlo', 'QL06p015650' => 'qlo', 'QL06p015686' => 'qlo', 'QL12p042927' => 'qlo', 'QL93p1863_0035' => 'qlo', 'RcHm_v2.0_Chr3g0450581' => 'rch', 'RcHm_v2.0_Chr4g0390371' => 'rch', 'RcHm_v2.0_Chr4g0390381' => 'rch', 'RcHm_v2.0_Chr4g0390491' => 'rch', 'RcHm_v2.0_Chr4g0390501' => 'rch', 'RcHm_v2.0_Chr6g0289231' => 'rch', 'Rhsim04G0190400' => 'rsi', 'Rhsim04G0190500' => 'rsi', 'Rhsim04G0190600' => 'rsi', 'Rhsim13G0031400' => 'rsi', 'Rhsim13G0165600' => 'rsi', 'RhsimUnG0114600' => 'rsi', 'RhsimUnG0114700' => 'rsi', 'Sabra02G0034800' => 'sbr', 'Sabra02G0035100' => 'sbr', 'Sabra05G0168600' => 'sbr', 'Sabra05G0168800' => 'sbr', 'Sabra08G0123700' => 'sbr', 'Sabra10G0031900' => 'sbr', 'Sabra13G0039000' => 'sbr', 'SalBow2G0782' => 'sbo', 'SalBow2G1403' => 'sbo', 'SalBow4G0074' => 'sbo', 'SalBow4G2635' => 'sbo', 'SalBow5G3010' => 'sbo', 'Sc05g0000870' => 'sci', 'Sc05g0000890' => 'sci', 'Sc13g0005000' => 'sci', 'Sc13g0005030' => 'sci', 'Sc19g0003790' => 'sci', 'Sc19g0003800' => 'sci', 'Sed0003467' => 'sed', 'Sed0009355' => 'sed', 'Sed0009894' => 'sed', 'Sed0011972' => 'sed', 'Sed0021483' => 'sed', 'Sed0021750' => 'sed', 'Sed0026279' => 'sed', 'SEGI_05312' => 'sgi', 'SEGI_10112' => 'sgi', 'SEGI_15835' => 'sgi', 'SEGI_30386' => 'sgi', 'SEGI_34122' => 'sgi', 'SEGI_35063' => 'sgi', 'SGA_v2.0_scaffold101G29794' => 'sas', 'SGA_v2.0_scaffold1G00573' => 'sas', 'SGA_v2.0_scaffold79G25637' => 'sas', 'SGA_v2.0_scaffold88G27283' => 'sas', 'SGA_v2.0_scaffold88G27285' => 'sas', 'SGA_v2.0_scaffold88G27331' => 'sas', 'SHI09937' => 'shi', 'SMO119G0302' => 'smo', 'SMO137G0231' => 'smo', 'SMO367G1151' => 'smo', 'Solyc02g082000.3' => 'sly', 'Solyc06g031670.3' => 'sly', 'Solyc06g053810.3' => 'sly', 'Solyc07g025457.1' => 'sly', 'Solyc08g059740.1' => 'sly', 'Solyc08g059750.3' => 'sly', 'Solyc09g083370.3' => 'sly', 'Solyc12g038950.3' => 'sly', 'Sopen02g026630' => 'spe', 'Sopen06g018930' => 'spe', 'Sopen06g018940' => 'spe', 'Sopen08g009460' => 'spe', 'Sopen09g032290' => 'spe', 'Sp1g03080' => 'spa', 'Sp1g03090' => 'spa', 'Sp1g05480' => 'spa', 'Sp2g07860' => 'spa', 'Sp2g08430' => 'spa', 'Sp2g08440' => 'spa', 'Sp2g26200' => 'spa', 'Sp4g13170' => 'spa', 'Sp6g33840' => 'spa', 'SpUn1204_0010' => 'spa', 'TAR365G0908' => 'tar', 'TAR381G1270' => 'tar', 'TAR381G1651' => 'tar', 'TAR625G1131' => 'tar', 'TAR633G0962' => 'tar', 'TAR633G1729' => 'tar', 'TAR633G1864' => 'tar', 'TAR636G0221' => 'tar', 'TAR636G0314' => 'tar', 'TAR636G3202' => 'tar', 'THA.LOC104800805' => 'tha', 'THA.LOC104801096' => 'tha', 'THA.LOC104801555' => 'tha', 'THA.LOC104808491' => 'tha', 'THA.LOC104808595' => 'tha', 'THA.LOC104815985' => 'tha', 'THA.LOC104822250' => 'tha', 'THA.LOC104826071' => 'tha', 'Thecc.01G265200' => 'tca', 'Thecc.01G265300' => 'tca', 'Thecc.01G265700' => 'tca', 'Thecc.03G109100' => 'tca', 'Thecc.04G245900' => 'tca', 'Thecc.04G246000' => 'tca', 'Thhalv10003334m.g' => 'esa', 'Thhalv10005508m.g' => 'esa', 'Thhalv10005643m.g' => 'esa', 'Thhalv10007316m.g' => 'esa', 'Thhalv10009006m.g' => 'esa', 'Thhalv10009309m.g' => 'esa', 'Thhalv10014917m.g' => 'esa', 'Thhalv10014919m.g' => 'esa', 'Thhalv10015393m.g' => 'esa', 'Thhalv10016515m.g' => 'esa', 'Thhalv10029242m.g' => 'esa', 'TPR.G16654' => 'tpr', 'TPR.G20589' => 'tpr', 'TPR.G23029' => 'tpr', 'TPR.G27731' => 'tpr', 'TPR.G28889' => 'tpr', 'TPR.G28899' => 'tpr', 'TPR.G30846' => 'tpr', 'TPR.G5452' => 'tpr', 'TPR.G5713' => 'tpr', 'TPR.G9046' => 'tpr', 'TPR.G9061' => 'tpr', 'TWI09G1075' => 'twi', 'TWI12G0806' => 'twi', 'TWI18G0108' => 'twi', 'TWI53G1361' => 'twi', 'TWI73G0185' => 'twi', 'TWI73G0427' => 'twi', 'unitig_37.g12001' => 'ugi', 'unitig_747.g21660' => 'ugi', 'unitig_748.g7232' => 'ugi', 'unitig_748.g7315' => 'ugi', 'unitig_85.g27262' => 'ugi', 'unitig_92.g28220' => 'ugi', 'vmacro02632' => 'vma', 'vmacro08410' => 'vma', 'vmacro08411' => 'vma', 'vmacro15407' => 'vma', 'VMungo0251G3619' => 'vmu', 'VMungo0720G1204' => 'vmu', 'VMungo0720G1918' => 'vmu', 'VMungo0720G2387' => 'vmu', 'VMungo0720G2961' => 'vmu', 'VMungo1215G2154' => 'vmu', 'VMungo1383G2411' => 'vmu', 'Zm00001eb051130' => 'zma', 'Zm00001eb116830' => 'zma', 'Zm00001eb116850' => 'zma', 'Zm00001eb151740' => 'zma', 'Zm00001eb292360' => 'zma', 'Zm00001eb301640' => 'zma' ) $gf_id = 'HOM05D000856' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000856' ) $data_identifier = 'HOM05D000856' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 13, 'ath' => (int) 10, 'atr' => (int) 1, 'acertr' => (int) 8, 'cqu' => (int) 6, 'bca' => (int) 21, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 11, 'car' => (int) 9, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 8, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 5, 'fan' => (int) 16, 'fve' => (int) 6, 'gma' => (int) 11, 'ghi' => (int) 19, 'gra' => (int) 9, 'vvi' => (int) 7, 'han' => (int) 17, 'cav' => (int) 5, 'hma' => (int) 2, 'vpl' => (int) 2, 'sun' => (int) 7, 'lal' => (int) 9, 'lja' => (int) 5, 'lonja' => (int) 9, 'lsa' => (int) 5, 'mes' => (int) 8, 'mpo' => (int) 3, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 10, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 15, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 9, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 9, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 6, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 5, 'spa' => (int) 10, 'tar' => (int) 10, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 11, 'tpr' => (int) 11, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 4, 'vmu' => (int) 7, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb301640' $species_info = array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ) $local_species = 'eca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000856', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p00010' => 'bna', 'A03p04160' => 'bna', 'A03p17160' => 'bna', 'A04p23370' => 'bna', 'A05p14860' => 'bna', 'A08p37020' => 'bna', 'A09p08050' => 'bna', 'A09p66800' => 'bna', 'A09p67940' => 'bna', 'A10p02680' => 'bna', 'A10p05320' => 'bna', 'Aa31LG1G20560' => 'aar', 'Aa31LG1G20610' => 'aar', 'Aa31LG1G7810' => 'aar', 'Aa31LG5G3590' => 'aar', 'Aa31LG5G6140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3819' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4683' => 'aag', 'Actinidia04480' => 'ach', 'Actinidia05466' => 'ach', 'Actinidia08445' => 'ach', 'Actinidia21170' => 'ach', 'Actinidia24812' => 'ach', 'Actinidia24951' => 'ach', 'Actinidia40088' => 'ach', 'Ah.02g111660' => 'amhyb', 'Ah.11g048900' => 'amhyb', 'Ah.11g049910' => 'amhyb', 'AL1G13870' => 'aly', 'AL1G13880' => 'aly', 'AL1G16760' => 'aly', 'AL390U10020' => 'aly', 'AL4G25520' => 'aly', 'AL6G19890' => 'aly', 'AL6G19900' => 'aly', 'AL6G19910' => 'aly', 'AL8G40100' => 'aly', 'Aqoxy2G03562' => 'aox', 'Aqoxy5G00316' => 'aox', 'Aqoxy5G00926' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1628KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1H403S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2FU6SJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.882I6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8YRY2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YN1SN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AF70II' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZA8L1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F916KL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHRD8H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KTZ8QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S22EMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8M29T' => 'arhy', 'AT1G04270' => 'ath', 'AT1G04280' => 'ath', 'AT1G06750' => 'ath', 'AT1G33850' => 'ath', 'AT2G30630' => 'ath', 'AT5G09490' => 'ath', 'AT5G09500' => 'ath', 'AT5G09510' => 'ath', 'AT5G43640' => 'ath', 'AT5G63070' => 'ath', 'ATR0605G315' => 'atr', 'Atru.chr11.175' => 'acertr', 'Atru.chr11.653' => 'acertr', 'Atru.chr3.1616' => 'acertr', 'Atru.chr4.2230' => 'acertr', 'Atru.chr4.2232' => 'acertr', 'Atru.chr5.1598' => 'acertr', 'Atru.chr5.1600' => 'acertr', 'Atru.chr5.2188' => 'acertr', 'AUR62008326' => 'cqu', 'AUR62011922' => 'cqu', 'AUR62011924' => 'cqu', 'AUR62021771' => 'cqu', 'AUR62032237' => 'cqu', 'AUR62032240' => 'cqu', 'BcaB01g05572' => 'bca', 'BcaB02g10337' => 'bca', 'BcaB04g19944' => 'bca', 'BcaB05g21548' => 'bca', 'BcaB05g21549' => 'bca', 'BcaB05g23227' => 'bca', 'BcaB06g26256' => 'bca', 'BcaB06g26257' => 'bca', 'BcaB06g28379' => 'bca', 'BcaC02g11159' => 'bca', 'BcaC03g13258' => 'bca', 'BcaC03g13259' => 'bca', 'BcaC05g24456' => 'bca', 'BcaC05g24457' => 'bca', 'BcaC07g36922' => 'bca', 'BcaC07g36923' => 'bca', 'BcaC07g42050' => 'bca', 'BcaC07g42176' => 'bca', 'BcaC07g42195' => 'bca', 'BcaC07g42196' => 'bca', 'BcaNung06674' => 'bca', 'BolC2t06351H' => 'bol', 'BolC2t06352H' => 'bol', 'BolC3t12993H' => 'bol', 'BolC4t23525H' => 'bol', 'BolC4t27475H' => 'bol', 'BolC5t29025H' => 'bol', 'BolC5t29026H' => 'bol', 'BolC8t46898H' => 'bol', 'BolC8t46899H' => 'bol', 'BolC8t52630H' => 'bol', 'BolC8t52765H' => 'bol', 'BolC9t53824H' => 'bol', 'BraA03t09760Z' => 'bra', 'BraA03t10990Z' => 'bra', 'BraA05t20413Z' => 'bra', 'BraA08t35602Z' => 'bra', 'BraA09t36458Z' => 'bra', 'BraA09t42018Z' => 'bra', 'BraA09t42129Z' => 'bra', 'BraA10t42536Z' => 'bra', 'BraA10t42537Z' => 'bra', 'C01p10690' => 'bna', 'C02p03890' => 'bna', 'C02p03900' => 'bna', 'C03p04620' => 'bna', 'C04p19870' => 'bna', 'C04p59670' => 'bna', 'C05p02460' => 'bna', 'C05p02470' => 'bna', 'C08p00980' => 'bna', 'C08p00990' => 'bna', 'C08p51030' => 'bna', 'C08p52360' => 'bna', 'C09p09120' => 'bna', 'CAN.G19.15' => 'can', 'CAN.G251.10' => 'can', 'CAN.G251.9' => 'can', 'CAN.G398.24' => 'can', 'CAN.G410.32' => 'can', 'CAN.G881.2' => 'can', 'CANSAT01G3025' => 'cansat', 'CANSAT78G1211' => 'cansat', 'CANSAT78G1218' => 'cansat', 'CANSAT78G1521' => 'cansat', 'CANSAT78G1670' => 'cansat', 'CARHR003600' => 'chi', 'CARHR003610' => 'chi', 'CARHR006290' => 'chi', 'CARHR006430' => 'chi', 'CARHR124110' => 'chi', 'CARHR203870' => 'chi', 'CARHR203880' => 'chi', 'CARHR203890' => 'chi', 'CARHR276880' => 'chi', 'Carub.0001s0346' => 'cru', 'Carub.0001s0347' => 'cru', 'Carub.0001s0607' => 'cru', 'Carub.0003s2768' => 'cru', 'Carub.0003s2769' => 'cru', 'Carub.0004s1178' => 'cru', 'Carub.0006s0806' => 'cru', 'Carub.0006s0807' => 'cru', 'Carub.0006s0808' => 'cru', 'Carub.0008s0501' => 'cru', 'Carub.0008s2379' => 'cru', 'Ca_08655_v3' => 'car', 'Ca_08922_v3' => 'car', 'Ca_08923_v3' => 'car', 'Ca_09119_v3' => 'car', 'Ca_09703_v3' => 'car', 'Ca_09705_v3' => 'car', 'Ca_09835_v3' => 'car', 'Ca_26403_v3' => 'car', 'Ca_30719_v3' => 'car', 'CBR_g17958' => 'cbr', 'CBR_g40516' => 'cbr', 'Cc00_g05350' => 'ccan', 'Cc01_g18690' => 'ccan', 'Cc03_g04830' => 'ccan', 'Cc03_g04850' => 'ccan', 'CDE02G4469' => 'cde', 'CDE06G0883' => 'cde', 'CDE06G1295' => 'cde', 'CDE06G1390' => 'cde', 'CDE07G0584' => 'cde', 'CDE07G1084' => 'cde', 'CDE08G1259' => 'cde', 'Cfa002341' => 'cfa', 'Cfa024337' => 'cfa', 'Ciclev10004749m.g' => 'ccl', 'Ciclev10006127m.g' => 'ccl', 'Ciclev10019720m.g' => 'ccl', 'Ciclev10022652m.g' => 'ccl', 'CiPaw.01G190400' => 'cil', 'CiPaw.01G190500' => 'cil', 'CiPaw.02G116400' => 'cil', 'CiPaw.02G116500' => 'cil', 'CiPaw.04G183000' => 'cil', 'CiPaw.04G183300' => 'cil', 'ClCG05G004610' => 'cla', 'ClCG05G004620' => 'cla', 'ClCG06G006730' => 'cla', 'ClCG06G006740' => 'cla', 'ClCG11G003690' => 'cla', 'COL.COLO4_08276' => 'col', 'COL.COLO4_08277' => 'col', 'COL.COLO4_15787' => 'col', 'COL.COLO4_15789' => 'col', 'Cpa.g.c44815' => 'cpa', 'Cpa.g.sc52.144' => 'cpa', 'Cpa.g.sc58.46' => 'cpa', 'Cpa.g.sc58.47' => 'cpa', 'Cre08.g360900' => 'cre', 'CsaV3_2G013030' => 'csa', 'CsaV3_2G013050' => 'csa', 'CsaV3_2G015620' => 'csa', 'CsaV3_3G012590' => 'csa', 'CsaV3_3G012600' => 'csa', 'CSS0001641' => 'camsi', 'CSS0008310' => 'camsi', 'CSS0013011' => 'camsi', 'CSS0017147' => 'camsi', 'CSS0022970' => 'camsi', 'CSS0025655' => 'camsi', 'CSS0028665' => 'camsi', 'CSS0029117' => 'camsi', 'CSS0032024' => 'camsi', 'CSS0039681' => 'camsi', 'CSS0046516' => 'camsi', 'CSS0050307' => 'camsi', 'DCAR_005871' => 'dca', 'DCAR_007342' => 'dca', 'DCAR_024228' => 'dca', 'DCAR_027277' => 'dca', 'DCAR_030718' => 'dca', 'Dinv20287' => 'din', 'Dinv22461' => 'din', 'Dinv22464' => 'din', 'Dinv29912' => 'din', 'Dinv29913' => 'din', 'Dinv34580' => 'din', 'Dinv34582' => 'din', 'Dinv44632' => 'din', 'Duzib052G0266' => 'dzi', 'Duzib133G0907' => 'dzi', 'Duzib133G1034' => 'dzi', 'Duzib138G0207' => 'dzi', 'Duzib138G0491' => 'dzi', 'Duzib151G0812' => 'dzi', 'Duzib151G1166' => 'dzi', 'Duzib168G0192' => 'dzi', 'Duzib211G0077' => 'dzi', 'Duzib212G0429' => 'dzi', 'Duzib212G0472' => 'dzi', 'ECA233G2617' => 'eca', 'ECA236G4188' => 'eca', 'ECA240G0936' => 'eca', 'ECA240G1129' => 'eca', 'ECA247G0623' => 'eca', 'EL10Ac5g10451' => 'bvu', 'EL10Ac5g10453' => 'bvu', 'EL10Ac5g10894' => 'bvu', 'Eucgr.H00192' => 'egr', 'Eucgr.H00193' => 'egr', 'Eucgr.H00194' => 'egr', 'Eucgr.J01562' => 'egr', 'Eucgr.K03301' => 'egr', 'FAN02G0632' => 'fan', 'FAN05G5378' => 'fan', 'FAN09G3247' => 'fan', 'FAN12G0435' => 'fan', 'FAN12G2426' => 'fan', 'FAN14G1707' => 'fan', 'FAN14G4725' => 'fan', 'FAN15G2071' => 'fan', 'FAN17G3065' => 'fan', 'FAN19G1376' => 'fan', 'FAN20G0354' => 'fan', 'FAN20G2429' => 'fan', 'FAN20G2658' => 'fan', 'FAN24G2343' => 'fan', 'FAN27G2362' => 'fan', 'FAN28G1765' => 'fan', 'FvH4_1g16020' => 'fve', 'FvH4_2g04890' => 'fve', 'FvH4_2g22270' => 'fve', 'FvH4_4g02630' => 'fve', 'FvH4_4g02640' => 'fve', 'FvH4_6g02650' => 'fve', 'Glyma.02G140600' => 'gma', 'Glyma.03G159900' => 'gma', 'Glyma.05G234800' => 'gma', 'Glyma.07G269600' => 'gma', 'Glyma.08G042300' => 'gma', 'Glyma.10G033500' => 'gma', 'Glyma.10G185200' => 'gma', 'Glyma.17G004300' => 'gma', 'Glyma.19G161900' => 'gma', 'Glyma.20G205100' => 'gma', 'Glyma.20G205200' => 'gma', 'Gohir.A01G139101' => 'ghi', 'Gohir.A02G035600' => 'ghi', 'Gohir.A02G117901' => 'ghi', 'Gohir.A07G210100' => 'ghi', 'Gohir.A07G210200' => 'ghi', 'Gohir.A08G061100' => 'ghi', 'Gohir.A09G223000' => 'ghi', 'Gohir.A09G223100' => 'ghi', 'Gohir.A10G113900' => 'ghi', 'Gohir.A10G114000' => 'ghi', 'Gohir.D02G042300' => 'ghi', 'Gohir.D07G216100' => 'ghi', 'Gohir.D07G216200' => 'ghi', 'Gohir.D08G070400' => 'ghi', 'Gohir.D09G225000' => 'ghi', 'Gohir.D09G225100' => 'ghi', 'Gohir.D10G152300' => 'ghi', 'Gohir.D10G153200' => 'ghi', 'Gohir.D11G133701' => 'ghi', 'Gorai.004G074100' => 'gra', 'Gorai.005G046800' => 'gra', 'Gorai.006G246500' => 'gra', 'Gorai.006G246600' => 'gra', 'Gorai.007G142900' => 'gra', 'Gorai.011G171000' => 'gra', 'Gorai.011G171100' => 'gra', 'Gorai.013G104300' => 'gra', 'Gorai.013G104400' => 'gra', 'GSVIVG01000754001' => 'vvi', 'GSVIVG01000756001' => 'vvi', 'GSVIVG01010903001' => 'vvi', 'GSVIVG01017623001' => 'vvi', 'GSVIVG01018113001' => 'vvi', 'GSVIVG01018116001' => 'vvi', 'GSVIVG01018118001' => 'vvi', 'HanXRQChr03g0076211' => 'han', 'HanXRQChr03g0092431' => 'han', 'HanXRQChr03g0092441' => 'han', 'HanXRQChr03g0092591' => 'han', 'HanXRQChr03g0092671' => 'han', 'HanXRQChr03g0092681' => 'han', 'HanXRQChr03g0092691' => 'han', 'HanXRQChr03g0092701' => 'han', 'HanXRQChr03g0092721' => 'han', 'HanXRQChr03g0092731' => 'han', 'HanXRQChr04g0113681' => 'han', 'HanXRQChr10g0281371' => 'han', 'HanXRQChr11g0337141' => 'han', 'HanXRQChr13g0424521' => 'han', 'HanXRQChr13g0424531' => 'han', 'HanXRQChr13g0424541' => 'han', 'HanXRQChr16g0498221' => 'han', 'Haze_04377' => 'cav', 'Haze_11298' => 'cav', 'Haze_24547' => 'cav', 'Haze_24550' => 'cav', 'Haze_26587' => 'cav', 'Hma1.2p1_0650F.1_g195410' => 'hma', 'Hma1.2p1_0893F.1_g233470' => 'hma', 'HPP92_006508' => 'vpl', 'HPP92_024780' => 'vpl', 'Hund02688' => 'sun', 'Hund09380' => 'sun', 'Hund09381' => 'sun', 'Hund09832' => 'sun', 'Hund09833' => 'sun', 'Hund11351' => 'sun', 'Hund11513' => 'sun', 'Lalb_Chr06g0162591' => 'lal', 'Lalb_Chr06g0162601' => 'lal', 'Lalb_Chr06g0169321' => 'lal', 'Lalb_Chr09g0330951' => 'lal', 'Lalb_Chr16g0387631' => 'lal', 'Lalb_Chr21g0306241' => 'lal', 'Lalb_Chr25g0290051' => 'lal', 'Lalb_Chr25g0290061' => 'lal', 'Lalb_Chr25g0290071' => 'lal', 'Lj1g0003876' => 'lja', 'Lj1P1207T36' => 'lonja', 'Lj2C1156G12' => 'lonja', 'Lj3A793G39' => 'lonja', 'Lj3C580G2' => 'lonja', 'Lj3C780G2' => 'lonja', 'Lj3C780T4' => 'lonja', 'Lj3C793G9' => 'lonja', 'Lj4g0012960' => 'lja', 'Lj5g0021252' => 'lja', 'Lj5g0021484' => 'lja', 'Lj5g0024528' => 'lja', 'Lj6A399T12' => 'lonja', 'Lj6A656G65' => 'lonja', 'Lsat_1_v5_gn_3_125500' => 'lsa', 'Lsat_1_v5_gn_3_125540' => 'lsa', 'Lsat_1_v5_gn_5_72701' => 'lsa', 'Lsat_1_v5_gn_8_91560' => 'lsa', 'Lsat_1_v5_gn_9_9640' => 'lsa', 'Manes.01G200600' => 'mes', 'Manes.01G200700' => 'mes', 'Manes.03G168900' => 'mes', 'Manes.03G169000' => 'mes', 'Manes.05G085801' => 'mes', 'Manes.05G086200' => 'mes', 'Manes.15G036700' => 'mes', 'Manes.15G036900' => 'mes', 'Mapoly0004s0172' => 'mpo', 'Mapoly0023s0001' => 'mpo', 'Mapoly0142s0012' => 'mpo', 'MBI01_g32854_MAGBIO' => 'mbi', 'MBI11_g24427_MAGBIO' => 'mbi', 'MBI11_g47319_MAGBIO' => 'mbi', 'MCO01G433' => 'mco', 'MD00G1187800' => 'mdo', 'MD04G1226500' => 'mdo', 'MD05G1203900' => 'mdo', 'MD10G1191100' => 'mdo', 'MD12G1243500' => 'mdo', 'MD13G1207000' => 'mdo', 'MD13G1207100' => 'mdo', 'MD16G1208600' => 'mdo', 'Medtr1g050352' => 'mtr', 'Medtr1g070385' => 'mtr', 'Medtr1g070450' => 'mtr', 'Medtr1g075200' => 'mtr', 'Medtr1g075250' => 'mtr', 'Medtr1g075260' => 'mtr', 'Medtr1g475250' => 'mtr', 'Medtr4g075450' => 'mtr', 'Medtr7g096300' => 'mtr', 'Medtr8g105110' => 'mtr', 'MELO3C006470.2' => 'cme', 'MELO3C006471.2' => 'cme', 'MELO3C020772.2' => 'cme', 'MELO3C026780.2' => 'cme', 'MELO3C026781.2' => 'cme', 'Migut.D00390' => 'egut', 'Migut.G00435' => 'egut', 'Migut.G00436' => 'egut', 'Migut.G00718' => 'egut', 'MSTRG.21891' => 'ama', 'MSTRG.26910' => 'ama', 'MSTRG.4099' => 'ama', 'MSTRG.9925' => 'ama', 'Nitab4.5_0000165g0010' => 'nta', 'Nitab4.5_0000209g0180' => 'nta', 'Nitab4.5_0000244g0440' => 'nta', 'Nitab4.5_0000525g0220' => 'nta', 'Nitab4.5_0001597g0020' => 'nta', 'Nitab4.5_0001878g0040' => 'nta', 'Nitab4.5_0001878g0060' => 'nta', 'Nitab4.5_0002838g0100' => 'nta', 'Nitab4.5_0002838g0120' => 'nta', 'Nitab4.5_0004798g0030' => 'nta', 'Nitab4.5_0005420g0010' => 'nta', 'Nitab4.5_0005507g0010' => 'nta', 'Nitab4.5_0005574g0020' => 'nta', 'Nitab4.5_0005838g0010' => 'nta', 'Nitab4.5_0010580g0020' => 'nta', 'Nn1g02599' => 'nnu', 'Nn1g02608' => 'nnu', 'Nn3g17742' => 'nnu', 'Nn3g19534' => 'nnu', 'Nn3g19535' => 'nnu', 'Oeu008790.1' => 'oeu', 'Oeu008792.1' => 'oeu', 'Oeu032590.1' => 'oeu', 'Oeu035349.1' => 'oeu', 'Oeu049791.1' => 'oeu', 'Os01g0774500' => 'osa', 'Os03g0628800' => 'osa', 'Os03g0798600' => 'osa', 'Os05g0508800' => 'osa', 'Peaxi162Scf00036g02018' => 'pax', 'Peaxi162Scf00578g00032' => 'pax', 'Peaxi162Scf00578g00317' => 'pax', 'Peaxi162Scf00785g00114' => 'pax', 'Peaxi162Scf00813g00119' => 'pax', 'Peaxi162Scf00906g00227' => 'pax', 'PGR004G0875' => 'pgr', 'PGR004G2424' => 'pgr', 'PGR031G1239' => 'pgr', 'PGR031G2474' => 'pgr', 'PGR044G0423' => 'pgr', 'PGSC0003DMG400001128' => 'stu', 'PGSC0003DMG400007336' => 'stu', 'PGSC0003DMG400016318' => 'stu', 'PGSC0003DMG400016319' => 'stu', 'PGSC0003DMG400018074' => 'stu', 'Phvul.001G157700' => 'pvu', 'Phvul.002G148550' => 'pvu', 'Phvul.002G320200' => 'pvu', 'Phvul.003G089200' => 'pvu', 'Phvul.007G126000' => 'pvu', 'Phvul.007G126100' => 'pvu', 'Phvul.007G178000' => 'pvu', 'Phvul.007G178200' => 'pvu', 'Potri.002G043000' => 'ptr', 'Potri.002G043200' => 'ptr', 'Potri.003G123750' => 'ptr', 'Potri.005G055401' => 'ptr', 'Potri.005G219700' => 'ptr', 'Potri.005G220000' => 'ptr', 'Potri.008G161901' => 'ptr', 'Potri.008G162000' => 'ptr', 'Potri.008G162400' => 'ptr', 'Potri.010G076900' => 'ptr', 'Pp3c12_9180' => 'ppa', 'Pp3c13_19770' => 'ppa', 'Pp3c14_22950' => 'ppa', 'Pp3c16_12160' => 'ppa', 'Pp3c27_7820' => 'ppa', 'Pp3c2_3490' => 'ppa', 'Pp3c3_23700' => 'ppa', 'Pp3c3_36520' => 'ppa', 'Pp3c4_15250' => 'ppa', 'PRCOL_00007002' => 'pco', 'Prupe.1G030600' => 'ppe', 'Prupe.1G030700' => 'ppe', 'Prupe.6G345200' => 'ppe', 'Prupe.8G230300' => 'ppe', 'Prupe.8G230500' => 'ppe', 'Psat3g059600' => 'psa', 'Psat5g200920' => 'psa', 'Psat6g056440' => 'psa', 'Psat6g057360' => 'psa', 'Psat6g134120' => 'psa', 'Psat6g134160' => 'psa', 'Psat7g008640' => 'psa', 'Psat7g185240' => 'psa', 'PSO017G1330' => 'pso', 'PSO063G6097' => 'pso', 'PSO170G0835' => 'pso', 'PSO170G2499' => 'pso', 'PSO210G5058' => 'pso', 'PSO210G6154' => 'pso', 'PSO585G0031' => 'pso', 'PSO832G0264' => 'pso', 'PSO832G4288' => 'pso', 'QL03p027355' => 'qlo', 'QL03p027430' => 'qlo', 'QL04p081380' => 'qlo', 'QL06p015642' => 'qlo', 'QL06p015650' => 'qlo', 'QL06p015686' => 'qlo', 'QL12p042927' => 'qlo', 'QL93p1863_0035' => 'qlo', 'RcHm_v2.0_Chr3g0450581' => 'rch', 'RcHm_v2.0_Chr4g0390371' => 'rch', 'RcHm_v2.0_Chr4g0390381' => 'rch', 'RcHm_v2.0_Chr4g0390491' => 'rch', 'RcHm_v2.0_Chr4g0390501' => 'rch', 'RcHm_v2.0_Chr6g0289231' => 'rch', 'Rhsim04G0190400' => 'rsi', 'Rhsim04G0190500' => 'rsi', 'Rhsim04G0190600' => 'rsi', 'Rhsim13G0031400' => 'rsi', 'Rhsim13G0165600' => 'rsi', 'RhsimUnG0114600' => 'rsi', 'RhsimUnG0114700' => 'rsi', 'Sabra02G0034800' => 'sbr', 'Sabra02G0035100' => 'sbr', 'Sabra05G0168600' => 'sbr', 'Sabra05G0168800' => 'sbr', 'Sabra08G0123700' => 'sbr', 'Sabra10G0031900' => 'sbr', 'Sabra13G0039000' => 'sbr', 'SalBow2G0782' => 'sbo', 'SalBow2G1403' => 'sbo', 'SalBow4G0074' => 'sbo', 'SalBow4G2635' => 'sbo', 'SalBow5G3010' => 'sbo', 'Sc05g0000870' => 'sci', 'Sc05g0000890' => 'sci', 'Sc13g0005000' => 'sci', 'Sc13g0005030' => 'sci', 'Sc19g0003790' => 'sci', 'Sc19g0003800' => 'sci', 'Sed0003467' => 'sed', 'Sed0009355' => 'sed', 'Sed0009894' => 'sed', 'Sed0011972' => 'sed', 'Sed0021483' => 'sed', 'Sed0021750' => 'sed', 'Sed0026279' => 'sed', 'SEGI_05312' => 'sgi', 'SEGI_10112' => 'sgi', 'SEGI_15835' => 'sgi', 'SEGI_30386' => 'sgi', 'SEGI_34122' => 'sgi', 'SEGI_35063' => 'sgi', 'SGA_v2.0_scaffold101G29794' => 'sas', 'SGA_v2.0_scaffold1G00573' => 'sas', 'SGA_v2.0_scaffold79G25637' => 'sas', 'SGA_v2.0_scaffold88G27283' => 'sas', 'SGA_v2.0_scaffold88G27285' => 'sas', 'SGA_v2.0_scaffold88G27331' => 'sas', 'SHI09937' => 'shi', 'SMO119G0302' => 'smo', 'SMO137G0231' => 'smo', 'SMO367G1151' => 'smo', 'Solyc02g082000.3' => 'sly', 'Solyc06g031670.3' => 'sly', 'Solyc06g053810.3' => 'sly', 'Solyc07g025457.1' => 'sly', 'Solyc08g059740.1' => 'sly', 'Solyc08g059750.3' => 'sly', 'Solyc09g083370.3' => 'sly', 'Solyc12g038950.3' => 'sly', 'Sopen02g026630' => 'spe', 'Sopen06g018930' => 'spe', 'Sopen06g018940' => 'spe', 'Sopen08g009460' => 'spe', 'Sopen09g032290' => 'spe', 'Sp1g03080' => 'spa', 'Sp1g03090' => 'spa', 'Sp1g05480' => 'spa', 'Sp2g07860' => 'spa', 'Sp2g08430' => 'spa', 'Sp2g08440' => 'spa', 'Sp2g26200' => 'spa', 'Sp4g13170' => 'spa', 'Sp6g33840' => 'spa', 'SpUn1204_0010' => 'spa', 'TAR365G0908' => 'tar', 'TAR381G1270' => 'tar', 'TAR381G1651' => 'tar', 'TAR625G1131' => 'tar', 'TAR633G0962' => 'tar', 'TAR633G1729' => 'tar', 'TAR633G1864' => 'tar', 'TAR636G0221' => 'tar', 'TAR636G0314' => 'tar', 'TAR636G3202' => 'tar', 'THA.LOC104800805' => 'tha', 'THA.LOC104801096' => 'tha', 'THA.LOC104801555' => 'tha', 'THA.LOC104808491' => 'tha', 'THA.LOC104808595' => 'tha', 'THA.LOC104815985' => 'tha', 'THA.LOC104822250' => 'tha', 'THA.LOC104826071' => 'tha', 'Thecc.01G265200' => 'tca', 'Thecc.01G265300' => 'tca', 'Thecc.01G265700' => 'tca', 'Thecc.03G109100' => 'tca', 'Thecc.04G245900' => 'tca', 'Thecc.04G246000' => 'tca', 'Thhalv10003334m.g' => 'esa', 'Thhalv10005508m.g' => 'esa', 'Thhalv10005643m.g' => 'esa', 'Thhalv10007316m.g' => 'esa', 'Thhalv10009006m.g' => 'esa', 'Thhalv10009309m.g' => 'esa', 'Thhalv10014917m.g' => 'esa', 'Thhalv10014919m.g' => 'esa', 'Thhalv10015393m.g' => 'esa', 'Thhalv10016515m.g' => 'esa', 'Thhalv10029242m.g' => 'esa', 'TPR.G16654' => 'tpr', 'TPR.G20589' => 'tpr', 'TPR.G23029' => 'tpr', 'TPR.G27731' => 'tpr', 'TPR.G28889' => 'tpr', 'TPR.G28899' => 'tpr', 'TPR.G30846' => 'tpr', 'TPR.G5452' => 'tpr', 'TPR.G5713' => 'tpr', 'TPR.G9046' => 'tpr', 'TPR.G9061' => 'tpr', 'TWI09G1075' => 'twi', 'TWI12G0806' => 'twi', 'TWI18G0108' => 'twi', 'TWI53G1361' => 'twi', 'TWI73G0185' => 'twi', 'TWI73G0427' => 'twi', 'unitig_37.g12001' => 'ugi', 'unitig_747.g21660' => 'ugi', 'unitig_748.g7232' => 'ugi', 'unitig_748.g7315' => 'ugi', 'unitig_85.g27262' => 'ugi', 'unitig_92.g28220' => 'ugi', 'vmacro02632' => 'vma', 'vmacro08410' => 'vma', 'vmacro08411' => 'vma', 'vmacro15407' => 'vma', 'VMungo0251G3619' => 'vmu', 'VMungo0720G1204' => 'vmu', 'VMungo0720G1918' => 'vmu', 'VMungo0720G2387' => 'vmu', 'VMungo0720G2961' => 'vmu', 'VMungo1215G2154' => 'vmu', 'VMungo1383G2411' => 'vmu', 'Zm00001eb051130' => 'zma', 'Zm00001eb116830' => 'zma', 'Zm00001eb116850' => 'zma', 'Zm00001eb151740' => 'zma', 'Zm00001eb292360' => 'zma', 'Zm00001eb301640' => 'zma' ), 'gf_id' => 'HOM05D000856', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000856' ), 'data_identifier' => 'HOM05D000856', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000856', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p00010' => 'bna', 'A03p04160' => 'bna', 'A03p17160' => 'bna', 'A04p23370' => 'bna', 'A05p14860' => 'bna', 'A08p37020' => 'bna', 'A09p08050' => 'bna', 'A09p66800' => 'bna', 'A09p67940' => 'bna', 'A10p02680' => 'bna', 'A10p05320' => 'bna', 'Aa31LG1G20560' => 'aar', 'Aa31LG1G20610' => 'aar', 'Aa31LG1G7810' => 'aar', 'Aa31LG5G3590' => 'aar', 'Aa31LG5G6140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3819' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4683' => 'aag', 'Actinidia04480' => 'ach', 'Actinidia05466' => 'ach', 'Actinidia08445' => 'ach', 'Actinidia21170' => 'ach', 'Actinidia24812' => 'ach', 'Actinidia24951' => 'ach', 'Actinidia40088' => 'ach', 'Ah.02g111660' => 'amhyb', 'Ah.11g048900' => 'amhyb', 'Ah.11g049910' => 'amhyb', 'AL1G13870' => 'aly', 'AL1G13880' => 'aly', 'AL1G16760' => 'aly', 'AL390U10020' => 'aly', 'AL4G25520' => 'aly', 'AL6G19890' => 'aly', 'AL6G19900' => 'aly', 'AL6G19910' => 'aly', 'AL8G40100' => 'aly', 'Aqoxy2G03562' => 'aox', 'Aqoxy5G00316' => 'aox', 'Aqoxy5G00926' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1628KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1H403S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2FU6SJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.882I6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8YRY2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YN1SN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AF70II' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZA8L1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F916KL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHRD8H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KTZ8QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S22EMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8M29T' => 'arhy', 'AT1G04270' => 'ath', 'AT1G04280' => 'ath', 'AT1G06750' => 'ath', 'AT1G33850' => 'ath', 'AT2G30630' => 'ath', 'AT5G09490' => 'ath', 'AT5G09500' => 'ath', 'AT5G09510' => 'ath', 'AT5G43640' => 'ath', 'AT5G63070' => 'ath', 'ATR0605G315' => 'atr', 'Atru.chr11.175' => 'acertr', 'Atru.chr11.653' => 'acertr', 'Atru.chr3.1616' => 'acertr', 'Atru.chr4.2230' => 'acertr', 'Atru.chr4.2232' => 'acertr', 'Atru.chr5.1598' => 'acertr', 'Atru.chr5.1600' => 'acertr', 'Atru.chr5.2188' => 'acertr', 'AUR62008326' => 'cqu', 'AUR62011922' => 'cqu', 'AUR62011924' => 'cqu', 'AUR62021771' => 'cqu', 'AUR62032237' => 'cqu', 'AUR62032240' => 'cqu', 'BcaB01g05572' => 'bca', 'BcaB02g10337' => 'bca', 'BcaB04g19944' => 'bca', 'BcaB05g21548' => 'bca', 'BcaB05g21549' => 'bca', 'BcaB05g23227' => 'bca', 'BcaB06g26256' => 'bca', 'BcaB06g26257' => 'bca', 'BcaB06g28379' => 'bca', 'BcaC02g11159' => 'bca', 'BcaC03g13258' => 'bca', 'BcaC03g13259' => 'bca', 'BcaC05g24456' => 'bca', 'BcaC05g24457' => 'bca', 'BcaC07g36922' => 'bca', 'BcaC07g36923' => 'bca', 'BcaC07g42050' => 'bca', 'BcaC07g42176' => 'bca', 'BcaC07g42195' => 'bca', 'BcaC07g42196' => 'bca', 'BcaNung06674' => 'bca', 'BolC2t06351H' => 'bol', 'BolC2t06352H' => 'bol', 'BolC3t12993H' => 'bol', 'BolC4t23525H' => 'bol', 'BolC4t27475H' => 'bol', 'BolC5t29025H' => 'bol', 'BolC5t29026H' => 'bol', 'BolC8t46898H' => 'bol', 'BolC8t46899H' => 'bol', 'BolC8t52630H' => 'bol', 'BolC8t52765H' => 'bol', 'BolC9t53824H' => 'bol', 'BraA03t09760Z' => 'bra', 'BraA03t10990Z' => 'bra', 'BraA05t20413Z' => 'bra', 'BraA08t35602Z' => 'bra', 'BraA09t36458Z' => 'bra', 'BraA09t42018Z' => 'bra', 'BraA09t42129Z' => 'bra', 'BraA10t42536Z' => 'bra', 'BraA10t42537Z' => 'bra', 'C01p10690' => 'bna', 'C02p03890' => 'bna', 'C02p03900' => 'bna', 'C03p04620' => 'bna', 'C04p19870' => 'bna', 'C04p59670' => 'bna', 'C05p02460' => 'bna', 'C05p02470' => 'bna', 'C08p00980' => 'bna', 'C08p00990' => 'bna', 'C08p51030' => 'bna', 'C08p52360' => 'bna', 'C09p09120' => 'bna', 'CAN.G19.15' => 'can', 'CAN.G251.10' => 'can', 'CAN.G251.9' => 'can', 'CAN.G398.24' => 'can', 'CAN.G410.32' => 'can', 'CAN.G881.2' => 'can', 'CANSAT01G3025' => 'cansat', 'CANSAT78G1211' => 'cansat', 'CANSAT78G1218' => 'cansat', 'CANSAT78G1521' => 'cansat', 'CANSAT78G1670' => 'cansat', 'CARHR003600' => 'chi', 'CARHR003610' => 'chi', 'CARHR006290' => 'chi', 'CARHR006430' => 'chi', 'CARHR124110' => 'chi', 'CARHR203870' => 'chi', 'CARHR203880' => 'chi', 'CARHR203890' => 'chi', 'CARHR276880' => 'chi', 'Carub.0001s0346' => 'cru', 'Carub.0001s0347' => 'cru', 'Carub.0001s0607' => 'cru', 'Carub.0003s2768' => 'cru', 'Carub.0003s2769' => 'cru', 'Carub.0004s1178' => 'cru', 'Carub.0006s0806' => 'cru', 'Carub.0006s0807' => 'cru', 'Carub.0006s0808' => 'cru', 'Carub.0008s0501' => 'cru', 'Carub.0008s2379' => 'cru', 'Ca_08655_v3' => 'car', 'Ca_08922_v3' => 'car', 'Ca_08923_v3' => 'car', 'Ca_09119_v3' => 'car', 'Ca_09703_v3' => 'car', 'Ca_09705_v3' => 'car', 'Ca_09835_v3' => 'car', 'Ca_26403_v3' => 'car', 'Ca_30719_v3' => 'car', 'CBR_g17958' => 'cbr', 'CBR_g40516' => 'cbr', 'Cc00_g05350' => 'ccan', 'Cc01_g18690' => 'ccan', 'Cc03_g04830' => 'ccan', 'Cc03_g04850' => 'ccan', 'CDE02G4469' => 'cde', 'CDE06G0883' => 'cde', 'CDE06G1295' => 'cde', 'CDE06G1390' => 'cde', 'CDE07G0584' => 'cde', 'CDE07G1084' => 'cde', 'CDE08G1259' => 'cde', 'Cfa002341' => 'cfa', 'Cfa024337' => 'cfa', 'Ciclev10004749m.g' => 'ccl', 'Ciclev10006127m.g' => 'ccl', 'Ciclev10019720m.g' => 'ccl', 'Ciclev10022652m.g' => 'ccl', 'CiPaw.01G190400' => 'cil', 'CiPaw.01G190500' => 'cil', 'CiPaw.02G116400' => 'cil', 'CiPaw.02G116500' => 'cil', 'CiPaw.04G183000' => 'cil', 'CiPaw.04G183300' => 'cil', 'ClCG05G004610' => 'cla', 'ClCG05G004620' => 'cla', 'ClCG06G006730' => 'cla', 'ClCG06G006740' => 'cla', 'ClCG11G003690' => 'cla', 'COL.COLO4_08276' => 'col', 'COL.COLO4_08277' => 'col', 'COL.COLO4_15787' => 'col', 'COL.COLO4_15789' => 'col', 'Cpa.g.c44815' => 'cpa', 'Cpa.g.sc52.144' => 'cpa', 'Cpa.g.sc58.46' => 'cpa', 'Cpa.g.sc58.47' => 'cpa', 'Cre08.g360900' => 'cre', 'CsaV3_2G013030' => 'csa', 'CsaV3_2G013050' => 'csa', 'CsaV3_2G015620' => 'csa', 'CsaV3_3G012590' => 'csa', 'CsaV3_3G012600' => 'csa', 'CSS0001641' => 'camsi', 'CSS0008310' => 'camsi', 'CSS0013011' => 'camsi', 'CSS0017147' => 'camsi', 'CSS0022970' => 'camsi', 'CSS0025655' => 'camsi', 'CSS0028665' => 'camsi', 'CSS0029117' => 'camsi', 'CSS0032024' => 'camsi', 'CSS0039681' => 'camsi', 'CSS0046516' => 'camsi', 'CSS0050307' => 'camsi', 'DCAR_005871' => 'dca', 'DCAR_007342' => 'dca', 'DCAR_024228' => 'dca', 'DCAR_027277' => 'dca', 'DCAR_030718' => 'dca', 'Dinv20287' => 'din', 'Dinv22461' => 'din', 'Dinv22464' => 'din', 'Dinv29912' => 'din', 'Dinv29913' => 'din', 'Dinv34580' => 'din', 'Dinv34582' => 'din', 'Dinv44632' => 'din', 'Duzib052G0266' => 'dzi', 'Duzib133G0907' => 'dzi', 'Duzib133G1034' => 'dzi', 'Duzib138G0207' => 'dzi', 'Duzib138G0491' => 'dzi', 'Duzib151G0812' => 'dzi', 'Duzib151G1166' => 'dzi', 'Duzib168G0192' => 'dzi', 'Duzib211G0077' => 'dzi', 'Duzib212G0429' => 'dzi', 'Duzib212G0472' => 'dzi', 'ECA233G2617' => 'eca', 'ECA236G4188' => 'eca', 'ECA240G0936' => 'eca', 'ECA240G1129' => 'eca', 'ECA247G0623' => 'eca', 'EL10Ac5g10451' => 'bvu', 'EL10Ac5g10453' => 'bvu', 'EL10Ac5g10894' => 'bvu', 'Eucgr.H00192' => 'egr', 'Eucgr.H00193' => 'egr', 'Eucgr.H00194' => 'egr', 'Eucgr.J01562' => 'egr', 'Eucgr.K03301' => 'egr', 'FAN02G0632' => 'fan', 'FAN05G5378' => 'fan', 'FAN09G3247' => 'fan', 'FAN12G0435' => 'fan', 'FAN12G2426' => 'fan', 'FAN14G1707' => 'fan', 'FAN14G4725' => 'fan', 'FAN15G2071' => 'fan', 'FAN17G3065' => 'fan', 'FAN19G1376' => 'fan', 'FAN20G0354' => 'fan', 'FAN20G2429' => 'fan', 'FAN20G2658' => 'fan', 'FAN24G2343' => 'fan', 'FAN27G2362' => 'fan', 'FAN28G1765' => 'fan', 'FvH4_1g16020' => 'fve', 'FvH4_2g04890' => 'fve', 'FvH4_2g22270' => 'fve', 'FvH4_4g02630' => 'fve', 'FvH4_4g02640' => 'fve', 'FvH4_6g02650' => 'fve', 'Glyma.02G140600' => 'gma', 'Glyma.03G159900' => 'gma', 'Glyma.05G234800' => 'gma', 'Glyma.07G269600' => 'gma', 'Glyma.08G042300' => 'gma', 'Glyma.10G033500' => 'gma', 'Glyma.10G185200' => 'gma', 'Glyma.17G004300' => 'gma', 'Glyma.19G161900' => 'gma', 'Glyma.20G205100' => 'gma', 'Glyma.20G205200' => 'gma', 'Gohir.A01G139101' => 'ghi', 'Gohir.A02G035600' => 'ghi', 'Gohir.A02G117901' => 'ghi', 'Gohir.A07G210100' => 'ghi', 'Gohir.A07G210200' => 'ghi', 'Gohir.A08G061100' => 'ghi', 'Gohir.A09G223000' => 'ghi', 'Gohir.A09G223100' => 'ghi', 'Gohir.A10G113900' => 'ghi', 'Gohir.A10G114000' => 'ghi', 'Gohir.D02G042300' => 'ghi', 'Gohir.D07G216100' => 'ghi', 'Gohir.D07G216200' => 'ghi', 'Gohir.D08G070400' => 'ghi', 'Gohir.D09G225000' => 'ghi', 'Gohir.D09G225100' => 'ghi', 'Gohir.D10G152300' => 'ghi', 'Gohir.D10G153200' => 'ghi', 'Gohir.D11G133701' => 'ghi', 'Gorai.004G074100' => 'gra', 'Gorai.005G046800' => 'gra', 'Gorai.006G246500' => 'gra', 'Gorai.006G246600' => 'gra', 'Gorai.007G142900' => 'gra', 'Gorai.011G171000' => 'gra', 'Gorai.011G171100' => 'gra', 'Gorai.013G104300' => 'gra', 'Gorai.013G104400' => 'gra', 'GSVIVG01000754001' => 'vvi', 'GSVIVG01000756001' => 'vvi', 'GSVIVG01010903001' => 'vvi', 'GSVIVG01017623001' => 'vvi', 'GSVIVG01018113001' => 'vvi', 'GSVIVG01018116001' => 'vvi', 'GSVIVG01018118001' => 'vvi', 'HanXRQChr03g0076211' => 'han', 'HanXRQChr03g0092431' => 'han', 'HanXRQChr03g0092441' => 'han', 'HanXRQChr03g0092591' => 'han', 'HanXRQChr03g0092671' => 'han', 'HanXRQChr03g0092681' => 'han', 'HanXRQChr03g0092691' => 'han', 'HanXRQChr03g0092701' => 'han', 'HanXRQChr03g0092721' => 'han', 'HanXRQChr03g0092731' => 'han', 'HanXRQChr04g0113681' => 'han', 'HanXRQChr10g0281371' => 'han', 'HanXRQChr11g0337141' => 'han', 'HanXRQChr13g0424521' => 'han', 'HanXRQChr13g0424531' => 'han', 'HanXRQChr13g0424541' => 'han', 'HanXRQChr16g0498221' => 'han', 'Haze_04377' => 'cav', 'Haze_11298' => 'cav', 'Haze_24547' => 'cav', 'Haze_24550' => 'cav', 'Haze_26587' => 'cav', 'Hma1.2p1_0650F.1_g195410' => 'hma', 'Hma1.2p1_0893F.1_g233470' => 'hma', 'HPP92_006508' => 'vpl', 'HPP92_024780' => 'vpl', 'Hund02688' => 'sun', 'Hund09380' => 'sun', 'Hund09381' => 'sun', 'Hund09832' => 'sun', 'Hund09833' => 'sun', 'Hund11351' => 'sun', 'Hund11513' => 'sun', 'Lalb_Chr06g0162591' => 'lal', 'Lalb_Chr06g0162601' => 'lal', 'Lalb_Chr06g0169321' => 'lal', 'Lalb_Chr09g0330951' => 'lal', 'Lalb_Chr16g0387631' => 'lal', 'Lalb_Chr21g0306241' => 'lal', 'Lalb_Chr25g0290051' => 'lal', 'Lalb_Chr25g0290061' => 'lal', 'Lalb_Chr25g0290071' => 'lal', 'Lj1g0003876' => 'lja', 'Lj1P1207T36' => 'lonja', 'Lj2C1156G12' => 'lonja', 'Lj3A793G39' => 'lonja', 'Lj3C580G2' => 'lonja', 'Lj3C780G2' => 'lonja', 'Lj3C780T4' => 'lonja', 'Lj3C793G9' => 'lonja', 'Lj4g0012960' => 'lja', 'Lj5g0021252' => 'lja', 'Lj5g0021484' => 'lja', 'Lj5g0024528' => 'lja', 'Lj6A399T12' => 'lonja', 'Lj6A656G65' => 'lonja', 'Lsat_1_v5_gn_3_125500' => 'lsa', 'Lsat_1_v5_gn_3_125540' => 'lsa', 'Lsat_1_v5_gn_5_72701' => 'lsa', 'Lsat_1_v5_gn_8_91560' => 'lsa', 'Lsat_1_v5_gn_9_9640' => 'lsa', 'Manes.01G200600' => 'mes', 'Manes.01G200700' => 'mes', 'Manes.03G168900' => 'mes', 'Manes.03G169000' => 'mes', 'Manes.05G085801' => 'mes', 'Manes.05G086200' => 'mes', 'Manes.15G036700' => 'mes', 'Manes.15G036900' => 'mes', 'Mapoly0004s0172' => 'mpo', 'Mapoly0023s0001' => 'mpo', 'Mapoly0142s0012' => 'mpo', 'MBI01_g32854_MAGBIO' => 'mbi', 'MBI11_g24427_MAGBIO' => 'mbi', 'MBI11_g47319_MAGBIO' => 'mbi', 'MCO01G433' => 'mco', 'MD00G1187800' => 'mdo', 'MD04G1226500' => 'mdo', 'MD05G1203900' => 'mdo', 'MD10G1191100' => 'mdo', 'MD12G1243500' => 'mdo', 'MD13G1207000' => 'mdo', 'MD13G1207100' => 'mdo', 'MD16G1208600' => 'mdo', 'Medtr1g050352' => 'mtr', 'Medtr1g070385' => 'mtr', 'Medtr1g070450' => 'mtr', 'Medtr1g075200' => 'mtr', 'Medtr1g075250' => 'mtr', 'Medtr1g075260' => 'mtr', 'Medtr1g475250' => 'mtr', 'Medtr4g075450' => 'mtr', 'Medtr7g096300' => 'mtr', 'Medtr8g105110' => 'mtr', 'MELO3C006470.2' => 'cme', 'MELO3C006471.2' => 'cme', 'MELO3C020772.2' => 'cme', 'MELO3C026780.2' => 'cme', 'MELO3C026781.2' => 'cme', 'Migut.D00390' => 'egut', 'Migut.G00435' => 'egut', 'Migut.G00436' => 'egut', 'Migut.G00718' => 'egut', 'MSTRG.21891' => 'ama', 'MSTRG.26910' => 'ama', 'MSTRG.4099' => 'ama', 'MSTRG.9925' => 'ama', 'Nitab4.5_0000165g0010' => 'nta', 'Nitab4.5_0000209g0180' => 'nta', 'Nitab4.5_0000244g0440' => 'nta', 'Nitab4.5_0000525g0220' => 'nta', 'Nitab4.5_0001597g0020' => 'nta', 'Nitab4.5_0001878g0040' => 'nta', 'Nitab4.5_0001878g0060' => 'nta', 'Nitab4.5_0002838g0100' => 'nta', 'Nitab4.5_0002838g0120' => 'nta', 'Nitab4.5_0004798g0030' => 'nta', 'Nitab4.5_0005420g0010' => 'nta', 'Nitab4.5_0005507g0010' => 'nta', 'Nitab4.5_0005574g0020' => 'nta', 'Nitab4.5_0005838g0010' => 'nta', 'Nitab4.5_0010580g0020' => 'nta', 'Nn1g02599' => 'nnu', 'Nn1g02608' => 'nnu', 'Nn3g17742' => 'nnu', 'Nn3g19534' => 'nnu', 'Nn3g19535' => 'nnu', 'Oeu008790.1' => 'oeu', 'Oeu008792.1' => 'oeu', 'Oeu032590.1' => 'oeu', 'Oeu035349.1' => 'oeu', 'Oeu049791.1' => 'oeu', 'Os01g0774500' => 'osa', 'Os03g0628800' => 'osa', 'Os03g0798600' => 'osa', 'Os05g0508800' => 'osa', 'Peaxi162Scf00036g02018' => 'pax', 'Peaxi162Scf00578g00032' => 'pax', 'Peaxi162Scf00578g00317' => 'pax', 'Peaxi162Scf00785g00114' => 'pax', 'Peaxi162Scf00813g00119' => 'pax', 'Peaxi162Scf00906g00227' => 'pax', 'PGR004G0875' => 'pgr', 'PGR004G2424' => 'pgr', 'PGR031G1239' => 'pgr', 'PGR031G2474' => 'pgr', 'PGR044G0423' => 'pgr', 'PGSC0003DMG400001128' => 'stu', 'PGSC0003DMG400007336' => 'stu', 'PGSC0003DMG400016318' => 'stu', 'PGSC0003DMG400016319' => 'stu', 'PGSC0003DMG400018074' => 'stu', 'Phvul.001G157700' => 'pvu', 'Phvul.002G148550' => 'pvu', 'Phvul.002G320200' => 'pvu', 'Phvul.003G089200' => 'pvu', 'Phvul.007G126000' => 'pvu', 'Phvul.007G126100' => 'pvu', 'Phvul.007G178000' => 'pvu', 'Phvul.007G178200' => 'pvu', 'Potri.002G043000' => 'ptr', 'Potri.002G043200' => 'ptr', 'Potri.003G123750' => 'ptr', 'Potri.005G055401' => 'ptr', 'Potri.005G219700' => 'ptr', 'Potri.005G220000' => 'ptr', 'Potri.008G161901' => 'ptr', 'Potri.008G162000' => 'ptr', 'Potri.008G162400' => 'ptr', 'Potri.010G076900' => 'ptr', 'Pp3c12_9180' => 'ppa', 'Pp3c13_19770' => 'ppa', 'Pp3c14_22950' => 'ppa', 'Pp3c16_12160' => 'ppa', 'Pp3c27_7820' => 'ppa', 'Pp3c2_3490' => 'ppa', 'Pp3c3_23700' => 'ppa', 'Pp3c3_36520' => 'ppa', 'Pp3c4_15250' => 'ppa', 'PRCOL_00007002' => 'pco', 'Prupe.1G030600' => 'ppe', 'Prupe.1G030700' => 'ppe', 'Prupe.6G345200' => 'ppe', 'Prupe.8G230300' => 'ppe', 'Prupe.8G230500' => 'ppe', 'Psat3g059600' => 'psa', 'Psat5g200920' => 'psa', 'Psat6g056440' => 'psa', 'Psat6g057360' => 'psa', 'Psat6g134120' => 'psa', 'Psat6g134160' => 'psa', 'Psat7g008640' => 'psa', 'Psat7g185240' => 'psa', 'PSO017G1330' => 'pso', 'PSO063G6097' => 'pso', 'PSO170G0835' => 'pso', 'PSO170G2499' => 'pso', 'PSO210G5058' => 'pso', 'PSO210G6154' => 'pso', 'PSO585G0031' => 'pso', 'PSO832G0264' => 'pso', 'PSO832G4288' => 'pso', 'QL03p027355' => 'qlo', 'QL03p027430' => 'qlo', 'QL04p081380' => 'qlo', 'QL06p015642' => 'qlo', 'QL06p015650' => 'qlo', 'QL06p015686' => 'qlo', 'QL12p042927' => 'qlo', 'QL93p1863_0035' => 'qlo', 'RcHm_v2.0_Chr3g0450581' => 'rch', 'RcHm_v2.0_Chr4g0390371' => 'rch', 'RcHm_v2.0_Chr4g0390381' => 'rch', 'RcHm_v2.0_Chr4g0390491' => 'rch', 'RcHm_v2.0_Chr4g0390501' => 'rch', 'RcHm_v2.0_Chr6g0289231' => 'rch', 'Rhsim04G0190400' => 'rsi', 'Rhsim04G0190500' => 'rsi', 'Rhsim04G0190600' => 'rsi', 'Rhsim13G0031400' => 'rsi', 'Rhsim13G0165600' => 'rsi', 'RhsimUnG0114600' => 'rsi', 'RhsimUnG0114700' => 'rsi', 'Sabra02G0034800' => 'sbr', 'Sabra02G0035100' => 'sbr', 'Sabra05G0168600' => 'sbr', 'Sabra05G0168800' => 'sbr', 'Sabra08G0123700' => 'sbr', 'Sabra10G0031900' => 'sbr', 'Sabra13G0039000' => 'sbr', 'SalBow2G0782' => 'sbo', 'SalBow2G1403' => 'sbo', 'SalBow4G0074' => 'sbo', 'SalBow4G2635' => 'sbo', 'SalBow5G3010' => 'sbo', 'Sc05g0000870' => 'sci', 'Sc05g0000890' => 'sci', 'Sc13g0005000' => 'sci', 'Sc13g0005030' => 'sci', 'Sc19g0003790' => 'sci', 'Sc19g0003800' => 'sci', 'Sed0003467' => 'sed', 'Sed0009355' => 'sed', 'Sed0009894' => 'sed', 'Sed0011972' => 'sed', 'Sed0021483' => 'sed', 'Sed0021750' => 'sed', 'Sed0026279' => 'sed', 'SEGI_05312' => 'sgi', 'SEGI_10112' => 'sgi', 'SEGI_15835' => 'sgi', 'SEGI_30386' => 'sgi', 'SEGI_34122' => 'sgi', 'SEGI_35063' => 'sgi', 'SGA_v2.0_scaffold101G29794' => 'sas', 'SGA_v2.0_scaffold1G00573' => 'sas', 'SGA_v2.0_scaffold79G25637' => 'sas', 'SGA_v2.0_scaffold88G27283' => 'sas', 'SGA_v2.0_scaffold88G27285' => 'sas', 'SGA_v2.0_scaffold88G27331' => 'sas', 'SHI09937' => 'shi', 'SMO119G0302' => 'smo', 'SMO137G0231' => 'smo', 'SMO367G1151' => 'smo', 'Solyc02g082000.3' => 'sly', 'Solyc06g031670.3' => 'sly', 'Solyc06g053810.3' => 'sly', 'Solyc07g025457.1' => 'sly', 'Solyc08g059740.1' => 'sly', 'Solyc08g059750.3' => 'sly', 'Solyc09g083370.3' => 'sly', 'Solyc12g038950.3' => 'sly', 'Sopen02g026630' => 'spe', 'Sopen06g018930' => 'spe', 'Sopen06g018940' => 'spe', 'Sopen08g009460' => 'spe', 'Sopen09g032290' => 'spe', 'Sp1g03080' => 'spa', 'Sp1g03090' => 'spa', 'Sp1g05480' => 'spa', 'Sp2g07860' => 'spa', 'Sp2g08430' => 'spa', 'Sp2g08440' => 'spa', 'Sp2g26200' => 'spa', 'Sp4g13170' => 'spa', 'Sp6g33840' => 'spa', 'SpUn1204_0010' => 'spa', 'TAR365G0908' => 'tar', 'TAR381G1270' => 'tar', 'TAR381G1651' => 'tar', 'TAR625G1131' => 'tar', 'TAR633G0962' => 'tar', 'TAR633G1729' => 'tar', 'TAR633G1864' => 'tar', 'TAR636G0221' => 'tar', 'TAR636G0314' => 'tar', 'TAR636G3202' => 'tar', 'THA.LOC104800805' => 'tha', 'THA.LOC104801096' => 'tha', 'THA.LOC104801555' => 'tha', 'THA.LOC104808491' => 'tha', 'THA.LOC104808595' => 'tha', 'THA.LOC104815985' => 'tha', 'THA.LOC104822250' => 'tha', 'THA.LOC104826071' => 'tha', 'Thecc.01G265200' => 'tca', 'Thecc.01G265300' => 'tca', 'Thecc.01G265700' => 'tca', 'Thecc.03G109100' => 'tca', 'Thecc.04G245900' => 'tca', 'Thecc.04G246000' => 'tca', 'Thhalv10003334m.g' => 'esa', 'Thhalv10005508m.g' => 'esa', 'Thhalv10005643m.g' => 'esa', 'Thhalv10007316m.g' => 'esa', 'Thhalv10009006m.g' => 'esa', 'Thhalv10009309m.g' => 'esa', 'Thhalv10014917m.g' => 'esa', 'Thhalv10014919m.g' => 'esa', 'Thhalv10015393m.g' => 'esa', 'Thhalv10016515m.g' => 'esa', 'Thhalv10029242m.g' => 'esa', 'TPR.G16654' => 'tpr', 'TPR.G20589' => 'tpr', 'TPR.G23029' => 'tpr', 'TPR.G27731' => 'tpr', 'TPR.G28889' => 'tpr', 'TPR.G28899' => 'tpr', 'TPR.G30846' => 'tpr', 'TPR.G5452' => 'tpr', 'TPR.G5713' => 'tpr', 'TPR.G9046' => 'tpr', 'TPR.G9061' => 'tpr', 'TWI09G1075' => 'twi', 'TWI12G0806' => 'twi', 'TWI18G0108' => 'twi', 'TWI53G1361' => 'twi', 'TWI73G0185' => 'twi', 'TWI73G0427' => 'twi', 'unitig_37.g12001' => 'ugi', 'unitig_747.g21660' => 'ugi', 'unitig_748.g7232' => 'ugi', 'unitig_748.g7315' => 'ugi', 'unitig_85.g27262' => 'ugi', 'unitig_92.g28220' => 'ugi', 'vmacro02632' => 'vma', 'vmacro08410' => 'vma', 'vmacro08411' => 'vma', 'vmacro15407' => 'vma', 'VMungo0251G3619' => 'vmu', 'VMungo0720G1204' => 'vmu', 'VMungo0720G1918' => 'vmu', 'VMungo0720G2387' => 'vmu', 'VMungo0720G2961' => 'vmu', 'VMungo1215G2154' => 'vmu', 'VMungo1383G2411' => 'vmu', 'Zm00001eb051130' => 'zma', 'Zm00001eb116830' => 'zma', 'Zm00001eb116850' => 'zma', 'Zm00001eb151740' => 'zma', 'Zm00001eb292360' => 'zma', 'Zm00001eb301640' => 'zma' ) $gf_id = 'HOM05D000856' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000856' ) $data_identifier = 'HOM05D000856' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 13, 'ath' => (int) 10, 'atr' => (int) 1, 'acertr' => (int) 8, 'cqu' => (int) 6, 'bca' => (int) 21, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 11, 'car' => (int) 9, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 8, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 5, 'fan' => (int) 16, 'fve' => (int) 6, 'gma' => (int) 11, 'ghi' => (int) 19, 'gra' => (int) 9, 'vvi' => (int) 7, 'han' => (int) 17, 'cav' => (int) 5, 'hma' => (int) 2, 'vpl' => (int) 2, 'sun' => (int) 7, 'lal' => (int) 9, 'lja' => (int) 5, 'lonja' => (int) 9, 'lsa' => (int) 5, 'mes' => (int) 8, 'mpo' => (int) 3, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 10, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 15, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 9, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 9, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 6, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 5, 'spa' => (int) 10, 'tar' => (int) 10, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 11, 'tpr' => (int) 11, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 4, 'vmu' => (int) 7, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb301640' $species_info = array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ) $local_species = 'egut' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000856', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p00010' => 'bna', 'A03p04160' => 'bna', 'A03p17160' => 'bna', 'A04p23370' => 'bna', 'A05p14860' => 'bna', 'A08p37020' => 'bna', 'A09p08050' => 'bna', 'A09p66800' => 'bna', 'A09p67940' => 'bna', 'A10p02680' => 'bna', 'A10p05320' => 'bna', 'Aa31LG1G20560' => 'aar', 'Aa31LG1G20610' => 'aar', 'Aa31LG1G7810' => 'aar', 'Aa31LG5G3590' => 'aar', 'Aa31LG5G6140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3819' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4683' => 'aag', 'Actinidia04480' => 'ach', 'Actinidia05466' => 'ach', 'Actinidia08445' => 'ach', 'Actinidia21170' => 'ach', 'Actinidia24812' => 'ach', 'Actinidia24951' => 'ach', 'Actinidia40088' => 'ach', 'Ah.02g111660' => 'amhyb', 'Ah.11g048900' => 'amhyb', 'Ah.11g049910' => 'amhyb', 'AL1G13870' => 'aly', 'AL1G13880' => 'aly', 'AL1G16760' => 'aly', 'AL390U10020' => 'aly', 'AL4G25520' => 'aly', 'AL6G19890' => 'aly', 'AL6G19900' => 'aly', 'AL6G19910' => 'aly', 'AL8G40100' => 'aly', 'Aqoxy2G03562' => 'aox', 'Aqoxy5G00316' => 'aox', 'Aqoxy5G00926' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1628KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1H403S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2FU6SJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.882I6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8YRY2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YN1SN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AF70II' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZA8L1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F916KL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHRD8H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KTZ8QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S22EMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8M29T' => 'arhy', 'AT1G04270' => 'ath', 'AT1G04280' => 'ath', 'AT1G06750' => 'ath', 'AT1G33850' => 'ath', 'AT2G30630' => 'ath', 'AT5G09490' => 'ath', 'AT5G09500' => 'ath', 'AT5G09510' => 'ath', 'AT5G43640' => 'ath', 'AT5G63070' => 'ath', 'ATR0605G315' => 'atr', 'Atru.chr11.175' => 'acertr', 'Atru.chr11.653' => 'acertr', 'Atru.chr3.1616' => 'acertr', 'Atru.chr4.2230' => 'acertr', 'Atru.chr4.2232' => 'acertr', 'Atru.chr5.1598' => 'acertr', 'Atru.chr5.1600' => 'acertr', 'Atru.chr5.2188' => 'acertr', 'AUR62008326' => 'cqu', 'AUR62011922' => 'cqu', 'AUR62011924' => 'cqu', 'AUR62021771' => 'cqu', 'AUR62032237' => 'cqu', 'AUR62032240' => 'cqu', 'BcaB01g05572' => 'bca', 'BcaB02g10337' => 'bca', 'BcaB04g19944' => 'bca', 'BcaB05g21548' => 'bca', 'BcaB05g21549' => 'bca', 'BcaB05g23227' => 'bca', 'BcaB06g26256' => 'bca', 'BcaB06g26257' => 'bca', 'BcaB06g28379' => 'bca', 'BcaC02g11159' => 'bca', 'BcaC03g13258' => 'bca', 'BcaC03g13259' => 'bca', 'BcaC05g24456' => 'bca', 'BcaC05g24457' => 'bca', 'BcaC07g36922' => 'bca', 'BcaC07g36923' => 'bca', 'BcaC07g42050' => 'bca', 'BcaC07g42176' => 'bca', 'BcaC07g42195' => 'bca', 'BcaC07g42196' => 'bca', 'BcaNung06674' => 'bca', 'BolC2t06351H' => 'bol', 'BolC2t06352H' => 'bol', 'BolC3t12993H' => 'bol', 'BolC4t23525H' => 'bol', 'BolC4t27475H' => 'bol', 'BolC5t29025H' => 'bol', 'BolC5t29026H' => 'bol', 'BolC8t46898H' => 'bol', 'BolC8t46899H' => 'bol', 'BolC8t52630H' => 'bol', 'BolC8t52765H' => 'bol', 'BolC9t53824H' => 'bol', 'BraA03t09760Z' => 'bra', 'BraA03t10990Z' => 'bra', 'BraA05t20413Z' => 'bra', 'BraA08t35602Z' => 'bra', 'BraA09t36458Z' => 'bra', 'BraA09t42018Z' => 'bra', 'BraA09t42129Z' => 'bra', 'BraA10t42536Z' => 'bra', 'BraA10t42537Z' => 'bra', 'C01p10690' => 'bna', 'C02p03890' => 'bna', 'C02p03900' => 'bna', 'C03p04620' => 'bna', 'C04p19870' => 'bna', 'C04p59670' => 'bna', 'C05p02460' => 'bna', 'C05p02470' => 'bna', 'C08p00980' => 'bna', 'C08p00990' => 'bna', 'C08p51030' => 'bna', 'C08p52360' => 'bna', 'C09p09120' => 'bna', 'CAN.G19.15' => 'can', 'CAN.G251.10' => 'can', 'CAN.G251.9' => 'can', 'CAN.G398.24' => 'can', 'CAN.G410.32' => 'can', 'CAN.G881.2' => 'can', 'CANSAT01G3025' => 'cansat', 'CANSAT78G1211' => 'cansat', 'CANSAT78G1218' => 'cansat', 'CANSAT78G1521' => 'cansat', 'CANSAT78G1670' => 'cansat', 'CARHR003600' => 'chi', 'CARHR003610' => 'chi', 'CARHR006290' => 'chi', 'CARHR006430' => 'chi', 'CARHR124110' => 'chi', 'CARHR203870' => 'chi', 'CARHR203880' => 'chi', 'CARHR203890' => 'chi', 'CARHR276880' => 'chi', 'Carub.0001s0346' => 'cru', 'Carub.0001s0347' => 'cru', 'Carub.0001s0607' => 'cru', 'Carub.0003s2768' => 'cru', 'Carub.0003s2769' => 'cru', 'Carub.0004s1178' => 'cru', 'Carub.0006s0806' => 'cru', 'Carub.0006s0807' => 'cru', 'Carub.0006s0808' => 'cru', 'Carub.0008s0501' => 'cru', 'Carub.0008s2379' => 'cru', 'Ca_08655_v3' => 'car', 'Ca_08922_v3' => 'car', 'Ca_08923_v3' => 'car', 'Ca_09119_v3' => 'car', 'Ca_09703_v3' => 'car', 'Ca_09705_v3' => 'car', 'Ca_09835_v3' => 'car', 'Ca_26403_v3' => 'car', 'Ca_30719_v3' => 'car', 'CBR_g17958' => 'cbr', 'CBR_g40516' => 'cbr', 'Cc00_g05350' => 'ccan', 'Cc01_g18690' => 'ccan', 'Cc03_g04830' => 'ccan', 'Cc03_g04850' => 'ccan', 'CDE02G4469' => 'cde', 'CDE06G0883' => 'cde', 'CDE06G1295' => 'cde', 'CDE06G1390' => 'cde', 'CDE07G0584' => 'cde', 'CDE07G1084' => 'cde', 'CDE08G1259' => 'cde', 'Cfa002341' => 'cfa', 'Cfa024337' => 'cfa', 'Ciclev10004749m.g' => 'ccl', 'Ciclev10006127m.g' => 'ccl', 'Ciclev10019720m.g' => 'ccl', 'Ciclev10022652m.g' => 'ccl', 'CiPaw.01G190400' => 'cil', 'CiPaw.01G190500' => 'cil', 'CiPaw.02G116400' => 'cil', 'CiPaw.02G116500' => 'cil', 'CiPaw.04G183000' => 'cil', 'CiPaw.04G183300' => 'cil', 'ClCG05G004610' => 'cla', 'ClCG05G004620' => 'cla', 'ClCG06G006730' => 'cla', 'ClCG06G006740' => 'cla', 'ClCG11G003690' => 'cla', 'COL.COLO4_08276' => 'col', 'COL.COLO4_08277' => 'col', 'COL.COLO4_15787' => 'col', 'COL.COLO4_15789' => 'col', 'Cpa.g.c44815' => 'cpa', 'Cpa.g.sc52.144' => 'cpa', 'Cpa.g.sc58.46' => 'cpa', 'Cpa.g.sc58.47' => 'cpa', 'Cre08.g360900' => 'cre', 'CsaV3_2G013030' => 'csa', 'CsaV3_2G013050' => 'csa', 'CsaV3_2G015620' => 'csa', 'CsaV3_3G012590' => 'csa', 'CsaV3_3G012600' => 'csa', 'CSS0001641' => 'camsi', 'CSS0008310' => 'camsi', 'CSS0013011' => 'camsi', 'CSS0017147' => 'camsi', 'CSS0022970' => 'camsi', 'CSS0025655' => 'camsi', 'CSS0028665' => 'camsi', 'CSS0029117' => 'camsi', 'CSS0032024' => 'camsi', 'CSS0039681' => 'camsi', 'CSS0046516' => 'camsi', 'CSS0050307' => 'camsi', 'DCAR_005871' => 'dca', 'DCAR_007342' => 'dca', 'DCAR_024228' => 'dca', 'DCAR_027277' => 'dca', 'DCAR_030718' => 'dca', 'Dinv20287' => 'din', 'Dinv22461' => 'din', 'Dinv22464' => 'din', 'Dinv29912' => 'din', 'Dinv29913' => 'din', 'Dinv34580' => 'din', 'Dinv34582' => 'din', 'Dinv44632' => 'din', 'Duzib052G0266' => 'dzi', 'Duzib133G0907' => 'dzi', 'Duzib133G1034' => 'dzi', 'Duzib138G0207' => 'dzi', 'Duzib138G0491' => 'dzi', 'Duzib151G0812' => 'dzi', 'Duzib151G1166' => 'dzi', 'Duzib168G0192' => 'dzi', 'Duzib211G0077' => 'dzi', 'Duzib212G0429' => 'dzi', 'Duzib212G0472' => 'dzi', 'ECA233G2617' => 'eca', 'ECA236G4188' => 'eca', 'ECA240G0936' => 'eca', 'ECA240G1129' => 'eca', 'ECA247G0623' => 'eca', 'EL10Ac5g10451' => 'bvu', 'EL10Ac5g10453' => 'bvu', 'EL10Ac5g10894' => 'bvu', 'Eucgr.H00192' => 'egr', 'Eucgr.H00193' => 'egr', 'Eucgr.H00194' => 'egr', 'Eucgr.J01562' => 'egr', 'Eucgr.K03301' => 'egr', 'FAN02G0632' => 'fan', 'FAN05G5378' => 'fan', 'FAN09G3247' => 'fan', 'FAN12G0435' => 'fan', 'FAN12G2426' => 'fan', 'FAN14G1707' => 'fan', 'FAN14G4725' => 'fan', 'FAN15G2071' => 'fan', 'FAN17G3065' => 'fan', 'FAN19G1376' => 'fan', 'FAN20G0354' => 'fan', 'FAN20G2429' => 'fan', 'FAN20G2658' => 'fan', 'FAN24G2343' => 'fan', 'FAN27G2362' => 'fan', 'FAN28G1765' => 'fan', 'FvH4_1g16020' => 'fve', 'FvH4_2g04890' => 'fve', 'FvH4_2g22270' => 'fve', 'FvH4_4g02630' => 'fve', 'FvH4_4g02640' => 'fve', 'FvH4_6g02650' => 'fve', 'Glyma.02G140600' => 'gma', 'Glyma.03G159900' => 'gma', 'Glyma.05G234800' => 'gma', 'Glyma.07G269600' => 'gma', 'Glyma.08G042300' => 'gma', 'Glyma.10G033500' => 'gma', 'Glyma.10G185200' => 'gma', 'Glyma.17G004300' => 'gma', 'Glyma.19G161900' => 'gma', 'Glyma.20G205100' => 'gma', 'Glyma.20G205200' => 'gma', 'Gohir.A01G139101' => 'ghi', 'Gohir.A02G035600' => 'ghi', 'Gohir.A02G117901' => 'ghi', 'Gohir.A07G210100' => 'ghi', 'Gohir.A07G210200' => 'ghi', 'Gohir.A08G061100' => 'ghi', 'Gohir.A09G223000' => 'ghi', 'Gohir.A09G223100' => 'ghi', 'Gohir.A10G113900' => 'ghi', 'Gohir.A10G114000' => 'ghi', 'Gohir.D02G042300' => 'ghi', 'Gohir.D07G216100' => 'ghi', 'Gohir.D07G216200' => 'ghi', 'Gohir.D08G070400' => 'ghi', 'Gohir.D09G225000' => 'ghi', 'Gohir.D09G225100' => 'ghi', 'Gohir.D10G152300' => 'ghi', 'Gohir.D10G153200' => 'ghi', 'Gohir.D11G133701' => 'ghi', 'Gorai.004G074100' => 'gra', 'Gorai.005G046800' => 'gra', 'Gorai.006G246500' => 'gra', 'Gorai.006G246600' => 'gra', 'Gorai.007G142900' => 'gra', 'Gorai.011G171000' => 'gra', 'Gorai.011G171100' => 'gra', 'Gorai.013G104300' => 'gra', 'Gorai.013G104400' => 'gra', 'GSVIVG01000754001' => 'vvi', 'GSVIVG01000756001' => 'vvi', 'GSVIVG01010903001' => 'vvi', 'GSVIVG01017623001' => 'vvi', 'GSVIVG01018113001' => 'vvi', 'GSVIVG01018116001' => 'vvi', 'GSVIVG01018118001' => 'vvi', 'HanXRQChr03g0076211' => 'han', 'HanXRQChr03g0092431' => 'han', 'HanXRQChr03g0092441' => 'han', 'HanXRQChr03g0092591' => 'han', 'HanXRQChr03g0092671' => 'han', 'HanXRQChr03g0092681' => 'han', 'HanXRQChr03g0092691' => 'han', 'HanXRQChr03g0092701' => 'han', 'HanXRQChr03g0092721' => 'han', 'HanXRQChr03g0092731' => 'han', 'HanXRQChr04g0113681' => 'han', 'HanXRQChr10g0281371' => 'han', 'HanXRQChr11g0337141' => 'han', 'HanXRQChr13g0424521' => 'han', 'HanXRQChr13g0424531' => 'han', 'HanXRQChr13g0424541' => 'han', 'HanXRQChr16g0498221' => 'han', 'Haze_04377' => 'cav', 'Haze_11298' => 'cav', 'Haze_24547' => 'cav', 'Haze_24550' => 'cav', 'Haze_26587' => 'cav', 'Hma1.2p1_0650F.1_g195410' => 'hma', 'Hma1.2p1_0893F.1_g233470' => 'hma', 'HPP92_006508' => 'vpl', 'HPP92_024780' => 'vpl', 'Hund02688' => 'sun', 'Hund09380' => 'sun', 'Hund09381' => 'sun', 'Hund09832' => 'sun', 'Hund09833' => 'sun', 'Hund11351' => 'sun', 'Hund11513' => 'sun', 'Lalb_Chr06g0162591' => 'lal', 'Lalb_Chr06g0162601' => 'lal', 'Lalb_Chr06g0169321' => 'lal', 'Lalb_Chr09g0330951' => 'lal', 'Lalb_Chr16g0387631' => 'lal', 'Lalb_Chr21g0306241' => 'lal', 'Lalb_Chr25g0290051' => 'lal', 'Lalb_Chr25g0290061' => 'lal', 'Lalb_Chr25g0290071' => 'lal', 'Lj1g0003876' => 'lja', 'Lj1P1207T36' => 'lonja', 'Lj2C1156G12' => 'lonja', 'Lj3A793G39' => 'lonja', 'Lj3C580G2' => 'lonja', 'Lj3C780G2' => 'lonja', 'Lj3C780T4' => 'lonja', 'Lj3C793G9' => 'lonja', 'Lj4g0012960' => 'lja', 'Lj5g0021252' => 'lja', 'Lj5g0021484' => 'lja', 'Lj5g0024528' => 'lja', 'Lj6A399T12' => 'lonja', 'Lj6A656G65' => 'lonja', 'Lsat_1_v5_gn_3_125500' => 'lsa', 'Lsat_1_v5_gn_3_125540' => 'lsa', 'Lsat_1_v5_gn_5_72701' => 'lsa', 'Lsat_1_v5_gn_8_91560' => 'lsa', 'Lsat_1_v5_gn_9_9640' => 'lsa', 'Manes.01G200600' => 'mes', 'Manes.01G200700' => 'mes', 'Manes.03G168900' => 'mes', 'Manes.03G169000' => 'mes', 'Manes.05G085801' => 'mes', 'Manes.05G086200' => 'mes', 'Manes.15G036700' => 'mes', 'Manes.15G036900' => 'mes', 'Mapoly0004s0172' => 'mpo', 'Mapoly0023s0001' => 'mpo', 'Mapoly0142s0012' => 'mpo', 'MBI01_g32854_MAGBIO' => 'mbi', 'MBI11_g24427_MAGBIO' => 'mbi', 'MBI11_g47319_MAGBIO' => 'mbi', 'MCO01G433' => 'mco', 'MD00G1187800' => 'mdo', 'MD04G1226500' => 'mdo', 'MD05G1203900' => 'mdo', 'MD10G1191100' => 'mdo', 'MD12G1243500' => 'mdo', 'MD13G1207000' => 'mdo', 'MD13G1207100' => 'mdo', 'MD16G1208600' => 'mdo', 'Medtr1g050352' => 'mtr', 'Medtr1g070385' => 'mtr', 'Medtr1g070450' => 'mtr', 'Medtr1g075200' => 'mtr', 'Medtr1g075250' => 'mtr', 'Medtr1g075260' => 'mtr', 'Medtr1g475250' => 'mtr', 'Medtr4g075450' => 'mtr', 'Medtr7g096300' => 'mtr', 'Medtr8g105110' => 'mtr', 'MELO3C006470.2' => 'cme', 'MELO3C006471.2' => 'cme', 'MELO3C020772.2' => 'cme', 'MELO3C026780.2' => 'cme', 'MELO3C026781.2' => 'cme', 'Migut.D00390' => 'egut', 'Migut.G00435' => 'egut', 'Migut.G00436' => 'egut', 'Migut.G00718' => 'egut', 'MSTRG.21891' => 'ama', 'MSTRG.26910' => 'ama', 'MSTRG.4099' => 'ama', 'MSTRG.9925' => 'ama', 'Nitab4.5_0000165g0010' => 'nta', 'Nitab4.5_0000209g0180' => 'nta', 'Nitab4.5_0000244g0440' => 'nta', 'Nitab4.5_0000525g0220' => 'nta', 'Nitab4.5_0001597g0020' => 'nta', 'Nitab4.5_0001878g0040' => 'nta', 'Nitab4.5_0001878g0060' => 'nta', 'Nitab4.5_0002838g0100' => 'nta', 'Nitab4.5_0002838g0120' => 'nta', 'Nitab4.5_0004798g0030' => 'nta', 'Nitab4.5_0005420g0010' => 'nta', 'Nitab4.5_0005507g0010' => 'nta', 'Nitab4.5_0005574g0020' => 'nta', 'Nitab4.5_0005838g0010' => 'nta', 'Nitab4.5_0010580g0020' => 'nta', 'Nn1g02599' => 'nnu', 'Nn1g02608' => 'nnu', 'Nn3g17742' => 'nnu', 'Nn3g19534' => 'nnu', 'Nn3g19535' => 'nnu', 'Oeu008790.1' => 'oeu', 'Oeu008792.1' => 'oeu', 'Oeu032590.1' => 'oeu', 'Oeu035349.1' => 'oeu', 'Oeu049791.1' => 'oeu', 'Os01g0774500' => 'osa', 'Os03g0628800' => 'osa', 'Os03g0798600' => 'osa', 'Os05g0508800' => 'osa', 'Peaxi162Scf00036g02018' => 'pax', 'Peaxi162Scf00578g00032' => 'pax', 'Peaxi162Scf00578g00317' => 'pax', 'Peaxi162Scf00785g00114' => 'pax', 'Peaxi162Scf00813g00119' => 'pax', 'Peaxi162Scf00906g00227' => 'pax', 'PGR004G0875' => 'pgr', 'PGR004G2424' => 'pgr', 'PGR031G1239' => 'pgr', 'PGR031G2474' => 'pgr', 'PGR044G0423' => 'pgr', 'PGSC0003DMG400001128' => 'stu', 'PGSC0003DMG400007336' => 'stu', 'PGSC0003DMG400016318' => 'stu', 'PGSC0003DMG400016319' => 'stu', 'PGSC0003DMG400018074' => 'stu', 'Phvul.001G157700' => 'pvu', 'Phvul.002G148550' => 'pvu', 'Phvul.002G320200' => 'pvu', 'Phvul.003G089200' => 'pvu', 'Phvul.007G126000' => 'pvu', 'Phvul.007G126100' => 'pvu', 'Phvul.007G178000' => 'pvu', 'Phvul.007G178200' => 'pvu', 'Potri.002G043000' => 'ptr', 'Potri.002G043200' => 'ptr', 'Potri.003G123750' => 'ptr', 'Potri.005G055401' => 'ptr', 'Potri.005G219700' => 'ptr', 'Potri.005G220000' => 'ptr', 'Potri.008G161901' => 'ptr', 'Potri.008G162000' => 'ptr', 'Potri.008G162400' => 'ptr', 'Potri.010G076900' => 'ptr', 'Pp3c12_9180' => 'ppa', 'Pp3c13_19770' => 'ppa', 'Pp3c14_22950' => 'ppa', 'Pp3c16_12160' => 'ppa', 'Pp3c27_7820' => 'ppa', 'Pp3c2_3490' => 'ppa', 'Pp3c3_23700' => 'ppa', 'Pp3c3_36520' => 'ppa', 'Pp3c4_15250' => 'ppa', 'PRCOL_00007002' => 'pco', 'Prupe.1G030600' => 'ppe', 'Prupe.1G030700' => 'ppe', 'Prupe.6G345200' => 'ppe', 'Prupe.8G230300' => 'ppe', 'Prupe.8G230500' => 'ppe', 'Psat3g059600' => 'psa', 'Psat5g200920' => 'psa', 'Psat6g056440' => 'psa', 'Psat6g057360' => 'psa', 'Psat6g134120' => 'psa', 'Psat6g134160' => 'psa', 'Psat7g008640' => 'psa', 'Psat7g185240' => 'psa', 'PSO017G1330' => 'pso', 'PSO063G6097' => 'pso', 'PSO170G0835' => 'pso', 'PSO170G2499' => 'pso', 'PSO210G5058' => 'pso', 'PSO210G6154' => 'pso', 'PSO585G0031' => 'pso', 'PSO832G0264' => 'pso', 'PSO832G4288' => 'pso', 'QL03p027355' => 'qlo', 'QL03p027430' => 'qlo', 'QL04p081380' => 'qlo', 'QL06p015642' => 'qlo', 'QL06p015650' => 'qlo', 'QL06p015686' => 'qlo', 'QL12p042927' => 'qlo', 'QL93p1863_0035' => 'qlo', 'RcHm_v2.0_Chr3g0450581' => 'rch', 'RcHm_v2.0_Chr4g0390371' => 'rch', 'RcHm_v2.0_Chr4g0390381' => 'rch', 'RcHm_v2.0_Chr4g0390491' => 'rch', 'RcHm_v2.0_Chr4g0390501' => 'rch', 'RcHm_v2.0_Chr6g0289231' => 'rch', 'Rhsim04G0190400' => 'rsi', 'Rhsim04G0190500' => 'rsi', 'Rhsim04G0190600' => 'rsi', 'Rhsim13G0031400' => 'rsi', 'Rhsim13G0165600' => 'rsi', 'RhsimUnG0114600' => 'rsi', 'RhsimUnG0114700' => 'rsi', 'Sabra02G0034800' => 'sbr', 'Sabra02G0035100' => 'sbr', 'Sabra05G0168600' => 'sbr', 'Sabra05G0168800' => 'sbr', 'Sabra08G0123700' => 'sbr', 'Sabra10G0031900' => 'sbr', 'Sabra13G0039000' => 'sbr', 'SalBow2G0782' => 'sbo', 'SalBow2G1403' => 'sbo', 'SalBow4G0074' => 'sbo', 'SalBow4G2635' => 'sbo', 'SalBow5G3010' => 'sbo', 'Sc05g0000870' => 'sci', 'Sc05g0000890' => 'sci', 'Sc13g0005000' => 'sci', 'Sc13g0005030' => 'sci', 'Sc19g0003790' => 'sci', 'Sc19g0003800' => 'sci', 'Sed0003467' => 'sed', 'Sed0009355' => 'sed', 'Sed0009894' => 'sed', 'Sed0011972' => 'sed', 'Sed0021483' => 'sed', 'Sed0021750' => 'sed', 'Sed0026279' => 'sed', 'SEGI_05312' => 'sgi', 'SEGI_10112' => 'sgi', 'SEGI_15835' => 'sgi', 'SEGI_30386' => 'sgi', 'SEGI_34122' => 'sgi', 'SEGI_35063' => 'sgi', 'SGA_v2.0_scaffold101G29794' => 'sas', 'SGA_v2.0_scaffold1G00573' => 'sas', 'SGA_v2.0_scaffold79G25637' => 'sas', 'SGA_v2.0_scaffold88G27283' => 'sas', 'SGA_v2.0_scaffold88G27285' => 'sas', 'SGA_v2.0_scaffold88G27331' => 'sas', 'SHI09937' => 'shi', 'SMO119G0302' => 'smo', 'SMO137G0231' => 'smo', 'SMO367G1151' => 'smo', 'Solyc02g082000.3' => 'sly', 'Solyc06g031670.3' => 'sly', 'Solyc06g053810.3' => 'sly', 'Solyc07g025457.1' => 'sly', 'Solyc08g059740.1' => 'sly', 'Solyc08g059750.3' => 'sly', 'Solyc09g083370.3' => 'sly', 'Solyc12g038950.3' => 'sly', 'Sopen02g026630' => 'spe', 'Sopen06g018930' => 'spe', 'Sopen06g018940' => 'spe', 'Sopen08g009460' => 'spe', 'Sopen09g032290' => 'spe', 'Sp1g03080' => 'spa', 'Sp1g03090' => 'spa', 'Sp1g05480' => 'spa', 'Sp2g07860' => 'spa', 'Sp2g08430' => 'spa', 'Sp2g08440' => 'spa', 'Sp2g26200' => 'spa', 'Sp4g13170' => 'spa', 'Sp6g33840' => 'spa', 'SpUn1204_0010' => 'spa', 'TAR365G0908' => 'tar', 'TAR381G1270' => 'tar', 'TAR381G1651' => 'tar', 'TAR625G1131' => 'tar', 'TAR633G0962' => 'tar', 'TAR633G1729' => 'tar', 'TAR633G1864' => 'tar', 'TAR636G0221' => 'tar', 'TAR636G0314' => 'tar', 'TAR636G3202' => 'tar', 'THA.LOC104800805' => 'tha', 'THA.LOC104801096' => 'tha', 'THA.LOC104801555' => 'tha', 'THA.LOC104808491' => 'tha', 'THA.LOC104808595' => 'tha', 'THA.LOC104815985' => 'tha', 'THA.LOC104822250' => 'tha', 'THA.LOC104826071' => 'tha', 'Thecc.01G265200' => 'tca', 'Thecc.01G265300' => 'tca', 'Thecc.01G265700' => 'tca', 'Thecc.03G109100' => 'tca', 'Thecc.04G245900' => 'tca', 'Thecc.04G246000' => 'tca', 'Thhalv10003334m.g' => 'esa', 'Thhalv10005508m.g' => 'esa', 'Thhalv10005643m.g' => 'esa', 'Thhalv10007316m.g' => 'esa', 'Thhalv10009006m.g' => 'esa', 'Thhalv10009309m.g' => 'esa', 'Thhalv10014917m.g' => 'esa', 'Thhalv10014919m.g' => 'esa', 'Thhalv10015393m.g' => 'esa', 'Thhalv10016515m.g' => 'esa', 'Thhalv10029242m.g' => 'esa', 'TPR.G16654' => 'tpr', 'TPR.G20589' => 'tpr', 'TPR.G23029' => 'tpr', 'TPR.G27731' => 'tpr', 'TPR.G28889' => 'tpr', 'TPR.G28899' => 'tpr', 'TPR.G30846' => 'tpr', 'TPR.G5452' => 'tpr', 'TPR.G5713' => 'tpr', 'TPR.G9046' => 'tpr', 'TPR.G9061' => 'tpr', 'TWI09G1075' => 'twi', 'TWI12G0806' => 'twi', 'TWI18G0108' => 'twi', 'TWI53G1361' => 'twi', 'TWI73G0185' => 'twi', 'TWI73G0427' => 'twi', 'unitig_37.g12001' => 'ugi', 'unitig_747.g21660' => 'ugi', 'unitig_748.g7232' => 'ugi', 'unitig_748.g7315' => 'ugi', 'unitig_85.g27262' => 'ugi', 'unitig_92.g28220' => 'ugi', 'vmacro02632' => 'vma', 'vmacro08410' => 'vma', 'vmacro08411' => 'vma', 'vmacro15407' => 'vma', 'VMungo0251G3619' => 'vmu', 'VMungo0720G1204' => 'vmu', 'VMungo0720G1918' => 'vmu', 'VMungo0720G2387' => 'vmu', 'VMungo0720G2961' => 'vmu', 'VMungo1215G2154' => 'vmu', 'VMungo1383G2411' => 'vmu', 'Zm00001eb051130' => 'zma', 'Zm00001eb116830' => 'zma', 'Zm00001eb116850' => 'zma', 'Zm00001eb151740' => 'zma', 'Zm00001eb292360' => 'zma', 'Zm00001eb301640' => 'zma' ), 'gf_id' => 'HOM05D000856', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000856' ), 'data_identifier' => 'HOM05D000856', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000856', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p00010' => 'bna', 'A03p04160' => 'bna', 'A03p17160' => 'bna', 'A04p23370' => 'bna', 'A05p14860' => 'bna', 'A08p37020' => 'bna', 'A09p08050' => 'bna', 'A09p66800' => 'bna', 'A09p67940' => 'bna', 'A10p02680' => 'bna', 'A10p05320' => 'bna', 'Aa31LG1G20560' => 'aar', 'Aa31LG1G20610' => 'aar', 'Aa31LG1G7810' => 'aar', 'Aa31LG5G3590' => 'aar', 'Aa31LG5G6140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3819' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4683' => 'aag', 'Actinidia04480' => 'ach', 'Actinidia05466' => 'ach', 'Actinidia08445' => 'ach', 'Actinidia21170' => 'ach', 'Actinidia24812' => 'ach', 'Actinidia24951' => 'ach', 'Actinidia40088' => 'ach', 'Ah.02g111660' => 'amhyb', 'Ah.11g048900' => 'amhyb', 'Ah.11g049910' => 'amhyb', 'AL1G13870' => 'aly', 'AL1G13880' => 'aly', 'AL1G16760' => 'aly', 'AL390U10020' => 'aly', 'AL4G25520' => 'aly', 'AL6G19890' => 'aly', 'AL6G19900' => 'aly', 'AL6G19910' => 'aly', 'AL8G40100' => 'aly', 'Aqoxy2G03562' => 'aox', 'Aqoxy5G00316' => 'aox', 'Aqoxy5G00926' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1628KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1H403S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2FU6SJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.882I6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8YRY2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YN1SN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AF70II' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZA8L1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F916KL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHRD8H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KTZ8QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S22EMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8M29T' => 'arhy', 'AT1G04270' => 'ath', 'AT1G04280' => 'ath', 'AT1G06750' => 'ath', 'AT1G33850' => 'ath', 'AT2G30630' => 'ath', 'AT5G09490' => 'ath', 'AT5G09500' => 'ath', 'AT5G09510' => 'ath', 'AT5G43640' => 'ath', 'AT5G63070' => 'ath', 'ATR0605G315' => 'atr', 'Atru.chr11.175' => 'acertr', 'Atru.chr11.653' => 'acertr', 'Atru.chr3.1616' => 'acertr', 'Atru.chr4.2230' => 'acertr', 'Atru.chr4.2232' => 'acertr', 'Atru.chr5.1598' => 'acertr', 'Atru.chr5.1600' => 'acertr', 'Atru.chr5.2188' => 'acertr', 'AUR62008326' => 'cqu', 'AUR62011922' => 'cqu', 'AUR62011924' => 'cqu', 'AUR62021771' => 'cqu', 'AUR62032237' => 'cqu', 'AUR62032240' => 'cqu', 'BcaB01g05572' => 'bca', 'BcaB02g10337' => 'bca', 'BcaB04g19944' => 'bca', 'BcaB05g21548' => 'bca', 'BcaB05g21549' => 'bca', 'BcaB05g23227' => 'bca', 'BcaB06g26256' => 'bca', 'BcaB06g26257' => 'bca', 'BcaB06g28379' => 'bca', 'BcaC02g11159' => 'bca', 'BcaC03g13258' => 'bca', 'BcaC03g13259' => 'bca', 'BcaC05g24456' => 'bca', 'BcaC05g24457' => 'bca', 'BcaC07g36922' => 'bca', 'BcaC07g36923' => 'bca', 'BcaC07g42050' => 'bca', 'BcaC07g42176' => 'bca', 'BcaC07g42195' => 'bca', 'BcaC07g42196' => 'bca', 'BcaNung06674' => 'bca', 'BolC2t06351H' => 'bol', 'BolC2t06352H' => 'bol', 'BolC3t12993H' => 'bol', 'BolC4t23525H' => 'bol', 'BolC4t27475H' => 'bol', 'BolC5t29025H' => 'bol', 'BolC5t29026H' => 'bol', 'BolC8t46898H' => 'bol', 'BolC8t46899H' => 'bol', 'BolC8t52630H' => 'bol', 'BolC8t52765H' => 'bol', 'BolC9t53824H' => 'bol', 'BraA03t09760Z' => 'bra', 'BraA03t10990Z' => 'bra', 'BraA05t20413Z' => 'bra', 'BraA08t35602Z' => 'bra', 'BraA09t36458Z' => 'bra', 'BraA09t42018Z' => 'bra', 'BraA09t42129Z' => 'bra', 'BraA10t42536Z' => 'bra', 'BraA10t42537Z' => 'bra', 'C01p10690' => 'bna', 'C02p03890' => 'bna', 'C02p03900' => 'bna', 'C03p04620' => 'bna', 'C04p19870' => 'bna', 'C04p59670' => 'bna', 'C05p02460' => 'bna', 'C05p02470' => 'bna', 'C08p00980' => 'bna', 'C08p00990' => 'bna', 'C08p51030' => 'bna', 'C08p52360' => 'bna', 'C09p09120' => 'bna', 'CAN.G19.15' => 'can', 'CAN.G251.10' => 'can', 'CAN.G251.9' => 'can', 'CAN.G398.24' => 'can', 'CAN.G410.32' => 'can', 'CAN.G881.2' => 'can', 'CANSAT01G3025' => 'cansat', 'CANSAT78G1211' => 'cansat', 'CANSAT78G1218' => 'cansat', 'CANSAT78G1521' => 'cansat', 'CANSAT78G1670' => 'cansat', 'CARHR003600' => 'chi', 'CARHR003610' => 'chi', 'CARHR006290' => 'chi', 'CARHR006430' => 'chi', 'CARHR124110' => 'chi', 'CARHR203870' => 'chi', 'CARHR203880' => 'chi', 'CARHR203890' => 'chi', 'CARHR276880' => 'chi', 'Carub.0001s0346' => 'cru', 'Carub.0001s0347' => 'cru', 'Carub.0001s0607' => 'cru', 'Carub.0003s2768' => 'cru', 'Carub.0003s2769' => 'cru', 'Carub.0004s1178' => 'cru', 'Carub.0006s0806' => 'cru', 'Carub.0006s0807' => 'cru', 'Carub.0006s0808' => 'cru', 'Carub.0008s0501' => 'cru', 'Carub.0008s2379' => 'cru', 'Ca_08655_v3' => 'car', 'Ca_08922_v3' => 'car', 'Ca_08923_v3' => 'car', 'Ca_09119_v3' => 'car', 'Ca_09703_v3' => 'car', 'Ca_09705_v3' => 'car', 'Ca_09835_v3' => 'car', 'Ca_26403_v3' => 'car', 'Ca_30719_v3' => 'car', 'CBR_g17958' => 'cbr', 'CBR_g40516' => 'cbr', 'Cc00_g05350' => 'ccan', 'Cc01_g18690' => 'ccan', 'Cc03_g04830' => 'ccan', 'Cc03_g04850' => 'ccan', 'CDE02G4469' => 'cde', 'CDE06G0883' => 'cde', 'CDE06G1295' => 'cde', 'CDE06G1390' => 'cde', 'CDE07G0584' => 'cde', 'CDE07G1084' => 'cde', 'CDE08G1259' => 'cde', 'Cfa002341' => 'cfa', 'Cfa024337' => 'cfa', 'Ciclev10004749m.g' => 'ccl', 'Ciclev10006127m.g' => 'ccl', 'Ciclev10019720m.g' => 'ccl', 'Ciclev10022652m.g' => 'ccl', 'CiPaw.01G190400' => 'cil', 'CiPaw.01G190500' => 'cil', 'CiPaw.02G116400' => 'cil', 'CiPaw.02G116500' => 'cil', 'CiPaw.04G183000' => 'cil', 'CiPaw.04G183300' => 'cil', 'ClCG05G004610' => 'cla', 'ClCG05G004620' => 'cla', 'ClCG06G006730' => 'cla', 'ClCG06G006740' => 'cla', 'ClCG11G003690' => 'cla', 'COL.COLO4_08276' => 'col', 'COL.COLO4_08277' => 'col', 'COL.COLO4_15787' => 'col', 'COL.COLO4_15789' => 'col', 'Cpa.g.c44815' => 'cpa', 'Cpa.g.sc52.144' => 'cpa', 'Cpa.g.sc58.46' => 'cpa', 'Cpa.g.sc58.47' => 'cpa', 'Cre08.g360900' => 'cre', 'CsaV3_2G013030' => 'csa', 'CsaV3_2G013050' => 'csa', 'CsaV3_2G015620' => 'csa', 'CsaV3_3G012590' => 'csa', 'CsaV3_3G012600' => 'csa', 'CSS0001641' => 'camsi', 'CSS0008310' => 'camsi', 'CSS0013011' => 'camsi', 'CSS0017147' => 'camsi', 'CSS0022970' => 'camsi', 'CSS0025655' => 'camsi', 'CSS0028665' => 'camsi', 'CSS0029117' => 'camsi', 'CSS0032024' => 'camsi', 'CSS0039681' => 'camsi', 'CSS0046516' => 'camsi', 'CSS0050307' => 'camsi', 'DCAR_005871' => 'dca', 'DCAR_007342' => 'dca', 'DCAR_024228' => 'dca', 'DCAR_027277' => 'dca', 'DCAR_030718' => 'dca', 'Dinv20287' => 'din', 'Dinv22461' => 'din', 'Dinv22464' => 'din', 'Dinv29912' => 'din', 'Dinv29913' => 'din', 'Dinv34580' => 'din', 'Dinv34582' => 'din', 'Dinv44632' => 'din', 'Duzib052G0266' => 'dzi', 'Duzib133G0907' => 'dzi', 'Duzib133G1034' => 'dzi', 'Duzib138G0207' => 'dzi', 'Duzib138G0491' => 'dzi', 'Duzib151G0812' => 'dzi', 'Duzib151G1166' => 'dzi', 'Duzib168G0192' => 'dzi', 'Duzib211G0077' => 'dzi', 'Duzib212G0429' => 'dzi', 'Duzib212G0472' => 'dzi', 'ECA233G2617' => 'eca', 'ECA236G4188' => 'eca', 'ECA240G0936' => 'eca', 'ECA240G1129' => 'eca', 'ECA247G0623' => 'eca', 'EL10Ac5g10451' => 'bvu', 'EL10Ac5g10453' => 'bvu', 'EL10Ac5g10894' => 'bvu', 'Eucgr.H00192' => 'egr', 'Eucgr.H00193' => 'egr', 'Eucgr.H00194' => 'egr', 'Eucgr.J01562' => 'egr', 'Eucgr.K03301' => 'egr', 'FAN02G0632' => 'fan', 'FAN05G5378' => 'fan', 'FAN09G3247' => 'fan', 'FAN12G0435' => 'fan', 'FAN12G2426' => 'fan', 'FAN14G1707' => 'fan', 'FAN14G4725' => 'fan', 'FAN15G2071' => 'fan', 'FAN17G3065' => 'fan', 'FAN19G1376' => 'fan', 'FAN20G0354' => 'fan', 'FAN20G2429' => 'fan', 'FAN20G2658' => 'fan', 'FAN24G2343' => 'fan', 'FAN27G2362' => 'fan', 'FAN28G1765' => 'fan', 'FvH4_1g16020' => 'fve', 'FvH4_2g04890' => 'fve', 'FvH4_2g22270' => 'fve', 'FvH4_4g02630' => 'fve', 'FvH4_4g02640' => 'fve', 'FvH4_6g02650' => 'fve', 'Glyma.02G140600' => 'gma', 'Glyma.03G159900' => 'gma', 'Glyma.05G234800' => 'gma', 'Glyma.07G269600' => 'gma', 'Glyma.08G042300' => 'gma', 'Glyma.10G033500' => 'gma', 'Glyma.10G185200' => 'gma', 'Glyma.17G004300' => 'gma', 'Glyma.19G161900' => 'gma', 'Glyma.20G205100' => 'gma', 'Glyma.20G205200' => 'gma', 'Gohir.A01G139101' => 'ghi', 'Gohir.A02G035600' => 'ghi', 'Gohir.A02G117901' => 'ghi', 'Gohir.A07G210100' => 'ghi', 'Gohir.A07G210200' => 'ghi', 'Gohir.A08G061100' => 'ghi', 'Gohir.A09G223000' => 'ghi', 'Gohir.A09G223100' => 'ghi', 'Gohir.A10G113900' => 'ghi', 'Gohir.A10G114000' => 'ghi', 'Gohir.D02G042300' => 'ghi', 'Gohir.D07G216100' => 'ghi', 'Gohir.D07G216200' => 'ghi', 'Gohir.D08G070400' => 'ghi', 'Gohir.D09G225000' => 'ghi', 'Gohir.D09G225100' => 'ghi', 'Gohir.D10G152300' => 'ghi', 'Gohir.D10G153200' => 'ghi', 'Gohir.D11G133701' => 'ghi', 'Gorai.004G074100' => 'gra', 'Gorai.005G046800' => 'gra', 'Gorai.006G246500' => 'gra', 'Gorai.006G246600' => 'gra', 'Gorai.007G142900' => 'gra', 'Gorai.011G171000' => 'gra', 'Gorai.011G171100' => 'gra', 'Gorai.013G104300' => 'gra', 'Gorai.013G104400' => 'gra', 'GSVIVG01000754001' => 'vvi', 'GSVIVG01000756001' => 'vvi', 'GSVIVG01010903001' => 'vvi', 'GSVIVG01017623001' => 'vvi', 'GSVIVG01018113001' => 'vvi', 'GSVIVG01018116001' => 'vvi', 'GSVIVG01018118001' => 'vvi', 'HanXRQChr03g0076211' => 'han', 'HanXRQChr03g0092431' => 'han', 'HanXRQChr03g0092441' => 'han', 'HanXRQChr03g0092591' => 'han', 'HanXRQChr03g0092671' => 'han', 'HanXRQChr03g0092681' => 'han', 'HanXRQChr03g0092691' => 'han', 'HanXRQChr03g0092701' => 'han', 'HanXRQChr03g0092721' => 'han', 'HanXRQChr03g0092731' => 'han', 'HanXRQChr04g0113681' => 'han', 'HanXRQChr10g0281371' => 'han', 'HanXRQChr11g0337141' => 'han', 'HanXRQChr13g0424521' => 'han', 'HanXRQChr13g0424531' => 'han', 'HanXRQChr13g0424541' => 'han', 'HanXRQChr16g0498221' => 'han', 'Haze_04377' => 'cav', 'Haze_11298' => 'cav', 'Haze_24547' => 'cav', 'Haze_24550' => 'cav', 'Haze_26587' => 'cav', 'Hma1.2p1_0650F.1_g195410' => 'hma', 'Hma1.2p1_0893F.1_g233470' => 'hma', 'HPP92_006508' => 'vpl', 'HPP92_024780' => 'vpl', 'Hund02688' => 'sun', 'Hund09380' => 'sun', 'Hund09381' => 'sun', 'Hund09832' => 'sun', 'Hund09833' => 'sun', 'Hund11351' => 'sun', 'Hund11513' => 'sun', 'Lalb_Chr06g0162591' => 'lal', 'Lalb_Chr06g0162601' => 'lal', 'Lalb_Chr06g0169321' => 'lal', 'Lalb_Chr09g0330951' => 'lal', 'Lalb_Chr16g0387631' => 'lal', 'Lalb_Chr21g0306241' => 'lal', 'Lalb_Chr25g0290051' => 'lal', 'Lalb_Chr25g0290061' => 'lal', 'Lalb_Chr25g0290071' => 'lal', 'Lj1g0003876' => 'lja', 'Lj1P1207T36' => 'lonja', 'Lj2C1156G12' => 'lonja', 'Lj3A793G39' => 'lonja', 'Lj3C580G2' => 'lonja', 'Lj3C780G2' => 'lonja', 'Lj3C780T4' => 'lonja', 'Lj3C793G9' => 'lonja', 'Lj4g0012960' => 'lja', 'Lj5g0021252' => 'lja', 'Lj5g0021484' => 'lja', 'Lj5g0024528' => 'lja', 'Lj6A399T12' => 'lonja', 'Lj6A656G65' => 'lonja', 'Lsat_1_v5_gn_3_125500' => 'lsa', 'Lsat_1_v5_gn_3_125540' => 'lsa', 'Lsat_1_v5_gn_5_72701' => 'lsa', 'Lsat_1_v5_gn_8_91560' => 'lsa', 'Lsat_1_v5_gn_9_9640' => 'lsa', 'Manes.01G200600' => 'mes', 'Manes.01G200700' => 'mes', 'Manes.03G168900' => 'mes', 'Manes.03G169000' => 'mes', 'Manes.05G085801' => 'mes', 'Manes.05G086200' => 'mes', 'Manes.15G036700' => 'mes', 'Manes.15G036900' => 'mes', 'Mapoly0004s0172' => 'mpo', 'Mapoly0023s0001' => 'mpo', 'Mapoly0142s0012' => 'mpo', 'MBI01_g32854_MAGBIO' => 'mbi', 'MBI11_g24427_MAGBIO' => 'mbi', 'MBI11_g47319_MAGBIO' => 'mbi', 'MCO01G433' => 'mco', 'MD00G1187800' => 'mdo', 'MD04G1226500' => 'mdo', 'MD05G1203900' => 'mdo', 'MD10G1191100' => 'mdo', 'MD12G1243500' => 'mdo', 'MD13G1207000' => 'mdo', 'MD13G1207100' => 'mdo', 'MD16G1208600' => 'mdo', 'Medtr1g050352' => 'mtr', 'Medtr1g070385' => 'mtr', 'Medtr1g070450' => 'mtr', 'Medtr1g075200' => 'mtr', 'Medtr1g075250' => 'mtr', 'Medtr1g075260' => 'mtr', 'Medtr1g475250' => 'mtr', 'Medtr4g075450' => 'mtr', 'Medtr7g096300' => 'mtr', 'Medtr8g105110' => 'mtr', 'MELO3C006470.2' => 'cme', 'MELO3C006471.2' => 'cme', 'MELO3C020772.2' => 'cme', 'MELO3C026780.2' => 'cme', 'MELO3C026781.2' => 'cme', 'Migut.D00390' => 'egut', 'Migut.G00435' => 'egut', 'Migut.G00436' => 'egut', 'Migut.G00718' => 'egut', 'MSTRG.21891' => 'ama', 'MSTRG.26910' => 'ama', 'MSTRG.4099' => 'ama', 'MSTRG.9925' => 'ama', 'Nitab4.5_0000165g0010' => 'nta', 'Nitab4.5_0000209g0180' => 'nta', 'Nitab4.5_0000244g0440' => 'nta', 'Nitab4.5_0000525g0220' => 'nta', 'Nitab4.5_0001597g0020' => 'nta', 'Nitab4.5_0001878g0040' => 'nta', 'Nitab4.5_0001878g0060' => 'nta', 'Nitab4.5_0002838g0100' => 'nta', 'Nitab4.5_0002838g0120' => 'nta', 'Nitab4.5_0004798g0030' => 'nta', 'Nitab4.5_0005420g0010' => 'nta', 'Nitab4.5_0005507g0010' => 'nta', 'Nitab4.5_0005574g0020' => 'nta', 'Nitab4.5_0005838g0010' => 'nta', 'Nitab4.5_0010580g0020' => 'nta', 'Nn1g02599' => 'nnu', 'Nn1g02608' => 'nnu', 'Nn3g17742' => 'nnu', 'Nn3g19534' => 'nnu', 'Nn3g19535' => 'nnu', 'Oeu008790.1' => 'oeu', 'Oeu008792.1' => 'oeu', 'Oeu032590.1' => 'oeu', 'Oeu035349.1' => 'oeu', 'Oeu049791.1' => 'oeu', 'Os01g0774500' => 'osa', 'Os03g0628800' => 'osa', 'Os03g0798600' => 'osa', 'Os05g0508800' => 'osa', 'Peaxi162Scf00036g02018' => 'pax', 'Peaxi162Scf00578g00032' => 'pax', 'Peaxi162Scf00578g00317' => 'pax', 'Peaxi162Scf00785g00114' => 'pax', 'Peaxi162Scf00813g00119' => 'pax', 'Peaxi162Scf00906g00227' => 'pax', 'PGR004G0875' => 'pgr', 'PGR004G2424' => 'pgr', 'PGR031G1239' => 'pgr', 'PGR031G2474' => 'pgr', 'PGR044G0423' => 'pgr', 'PGSC0003DMG400001128' => 'stu', 'PGSC0003DMG400007336' => 'stu', 'PGSC0003DMG400016318' => 'stu', 'PGSC0003DMG400016319' => 'stu', 'PGSC0003DMG400018074' => 'stu', 'Phvul.001G157700' => 'pvu', 'Phvul.002G148550' => 'pvu', 'Phvul.002G320200' => 'pvu', 'Phvul.003G089200' => 'pvu', 'Phvul.007G126000' => 'pvu', 'Phvul.007G126100' => 'pvu', 'Phvul.007G178000' => 'pvu', 'Phvul.007G178200' => 'pvu', 'Potri.002G043000' => 'ptr', 'Potri.002G043200' => 'ptr', 'Potri.003G123750' => 'ptr', 'Potri.005G055401' => 'ptr', 'Potri.005G219700' => 'ptr', 'Potri.005G220000' => 'ptr', 'Potri.008G161901' => 'ptr', 'Potri.008G162000' => 'ptr', 'Potri.008G162400' => 'ptr', 'Potri.010G076900' => 'ptr', 'Pp3c12_9180' => 'ppa', 'Pp3c13_19770' => 'ppa', 'Pp3c14_22950' => 'ppa', 'Pp3c16_12160' => 'ppa', 'Pp3c27_7820' => 'ppa', 'Pp3c2_3490' => 'ppa', 'Pp3c3_23700' => 'ppa', 'Pp3c3_36520' => 'ppa', 'Pp3c4_15250' => 'ppa', 'PRCOL_00007002' => 'pco', 'Prupe.1G030600' => 'ppe', 'Prupe.1G030700' => 'ppe', 'Prupe.6G345200' => 'ppe', 'Prupe.8G230300' => 'ppe', 'Prupe.8G230500' => 'ppe', 'Psat3g059600' => 'psa', 'Psat5g200920' => 'psa', 'Psat6g056440' => 'psa', 'Psat6g057360' => 'psa', 'Psat6g134120' => 'psa', 'Psat6g134160' => 'psa', 'Psat7g008640' => 'psa', 'Psat7g185240' => 'psa', 'PSO017G1330' => 'pso', 'PSO063G6097' => 'pso', 'PSO170G0835' => 'pso', 'PSO170G2499' => 'pso', 'PSO210G5058' => 'pso', 'PSO210G6154' => 'pso', 'PSO585G0031' => 'pso', 'PSO832G0264' => 'pso', 'PSO832G4288' => 'pso', 'QL03p027355' => 'qlo', 'QL03p027430' => 'qlo', 'QL04p081380' => 'qlo', 'QL06p015642' => 'qlo', 'QL06p015650' => 'qlo', 'QL06p015686' => 'qlo', 'QL12p042927' => 'qlo', 'QL93p1863_0035' => 'qlo', 'RcHm_v2.0_Chr3g0450581' => 'rch', 'RcHm_v2.0_Chr4g0390371' => 'rch', 'RcHm_v2.0_Chr4g0390381' => 'rch', 'RcHm_v2.0_Chr4g0390491' => 'rch', 'RcHm_v2.0_Chr4g0390501' => 'rch', 'RcHm_v2.0_Chr6g0289231' => 'rch', 'Rhsim04G0190400' => 'rsi', 'Rhsim04G0190500' => 'rsi', 'Rhsim04G0190600' => 'rsi', 'Rhsim13G0031400' => 'rsi', 'Rhsim13G0165600' => 'rsi', 'RhsimUnG0114600' => 'rsi', 'RhsimUnG0114700' => 'rsi', 'Sabra02G0034800' => 'sbr', 'Sabra02G0035100' => 'sbr', 'Sabra05G0168600' => 'sbr', 'Sabra05G0168800' => 'sbr', 'Sabra08G0123700' => 'sbr', 'Sabra10G0031900' => 'sbr', 'Sabra13G0039000' => 'sbr', 'SalBow2G0782' => 'sbo', 'SalBow2G1403' => 'sbo', 'SalBow4G0074' => 'sbo', 'SalBow4G2635' => 'sbo', 'SalBow5G3010' => 'sbo', 'Sc05g0000870' => 'sci', 'Sc05g0000890' => 'sci', 'Sc13g0005000' => 'sci', 'Sc13g0005030' => 'sci', 'Sc19g0003790' => 'sci', 'Sc19g0003800' => 'sci', 'Sed0003467' => 'sed', 'Sed0009355' => 'sed', 'Sed0009894' => 'sed', 'Sed0011972' => 'sed', 'Sed0021483' => 'sed', 'Sed0021750' => 'sed', 'Sed0026279' => 'sed', 'SEGI_05312' => 'sgi', 'SEGI_10112' => 'sgi', 'SEGI_15835' => 'sgi', 'SEGI_30386' => 'sgi', 'SEGI_34122' => 'sgi', 'SEGI_35063' => 'sgi', 'SGA_v2.0_scaffold101G29794' => 'sas', 'SGA_v2.0_scaffold1G00573' => 'sas', 'SGA_v2.0_scaffold79G25637' => 'sas', 'SGA_v2.0_scaffold88G27283' => 'sas', 'SGA_v2.0_scaffold88G27285' => 'sas', 'SGA_v2.0_scaffold88G27331' => 'sas', 'SHI09937' => 'shi', 'SMO119G0302' => 'smo', 'SMO137G0231' => 'smo', 'SMO367G1151' => 'smo', 'Solyc02g082000.3' => 'sly', 'Solyc06g031670.3' => 'sly', 'Solyc06g053810.3' => 'sly', 'Solyc07g025457.1' => 'sly', 'Solyc08g059740.1' => 'sly', 'Solyc08g059750.3' => 'sly', 'Solyc09g083370.3' => 'sly', 'Solyc12g038950.3' => 'sly', 'Sopen02g026630' => 'spe', 'Sopen06g018930' => 'spe', 'Sopen06g018940' => 'spe', 'Sopen08g009460' => 'spe', 'Sopen09g032290' => 'spe', 'Sp1g03080' => 'spa', 'Sp1g03090' => 'spa', 'Sp1g05480' => 'spa', 'Sp2g07860' => 'spa', 'Sp2g08430' => 'spa', 'Sp2g08440' => 'spa', 'Sp2g26200' => 'spa', 'Sp4g13170' => 'spa', 'Sp6g33840' => 'spa', 'SpUn1204_0010' => 'spa', 'TAR365G0908' => 'tar', 'TAR381G1270' => 'tar', 'TAR381G1651' => 'tar', 'TAR625G1131' => 'tar', 'TAR633G0962' => 'tar', 'TAR633G1729' => 'tar', 'TAR633G1864' => 'tar', 'TAR636G0221' => 'tar', 'TAR636G0314' => 'tar', 'TAR636G3202' => 'tar', 'THA.LOC104800805' => 'tha', 'THA.LOC104801096' => 'tha', 'THA.LOC104801555' => 'tha', 'THA.LOC104808491' => 'tha', 'THA.LOC104808595' => 'tha', 'THA.LOC104815985' => 'tha', 'THA.LOC104822250' => 'tha', 'THA.LOC104826071' => 'tha', 'Thecc.01G265200' => 'tca', 'Thecc.01G265300' => 'tca', 'Thecc.01G265700' => 'tca', 'Thecc.03G109100' => 'tca', 'Thecc.04G245900' => 'tca', 'Thecc.04G246000' => 'tca', 'Thhalv10003334m.g' => 'esa', 'Thhalv10005508m.g' => 'esa', 'Thhalv10005643m.g' => 'esa', 'Thhalv10007316m.g' => 'esa', 'Thhalv10009006m.g' => 'esa', 'Thhalv10009309m.g' => 'esa', 'Thhalv10014917m.g' => 'esa', 'Thhalv10014919m.g' => 'esa', 'Thhalv10015393m.g' => 'esa', 'Thhalv10016515m.g' => 'esa', 'Thhalv10029242m.g' => 'esa', 'TPR.G16654' => 'tpr', 'TPR.G20589' => 'tpr', 'TPR.G23029' => 'tpr', 'TPR.G27731' => 'tpr', 'TPR.G28889' => 'tpr', 'TPR.G28899' => 'tpr', 'TPR.G30846' => 'tpr', 'TPR.G5452' => 'tpr', 'TPR.G5713' => 'tpr', 'TPR.G9046' => 'tpr', 'TPR.G9061' => 'tpr', 'TWI09G1075' => 'twi', 'TWI12G0806' => 'twi', 'TWI18G0108' => 'twi', 'TWI53G1361' => 'twi', 'TWI73G0185' => 'twi', 'TWI73G0427' => 'twi', 'unitig_37.g12001' => 'ugi', 'unitig_747.g21660' => 'ugi', 'unitig_748.g7232' => 'ugi', 'unitig_748.g7315' => 'ugi', 'unitig_85.g27262' => 'ugi', 'unitig_92.g28220' => 'ugi', 'vmacro02632' => 'vma', 'vmacro08410' => 'vma', 'vmacro08411' => 'vma', 'vmacro15407' => 'vma', 'VMungo0251G3619' => 'vmu', 'VMungo0720G1204' => 'vmu', 'VMungo0720G1918' => 'vmu', 'VMungo0720G2387' => 'vmu', 'VMungo0720G2961' => 'vmu', 'VMungo1215G2154' => 'vmu', 'VMungo1383G2411' => 'vmu', 'Zm00001eb051130' => 'zma', 'Zm00001eb116830' => 'zma', 'Zm00001eb116850' => 'zma', 'Zm00001eb151740' => 'zma', 'Zm00001eb292360' => 'zma', 'Zm00001eb301640' => 'zma' ) $gf_id = 'HOM05D000856' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000856' ) $data_identifier = 'HOM05D000856' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 13, 'ath' => (int) 10, 'atr' => (int) 1, 'acertr' => (int) 8, 'cqu' => (int) 6, 'bca' => (int) 21, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 11, 'car' => (int) 9, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 8, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 5, 'fan' => (int) 16, 'fve' => (int) 6, 'gma' => (int) 11, 'ghi' => (int) 19, 'gra' => (int) 9, 'vvi' => (int) 7, 'han' => (int) 17, 'cav' => (int) 5, 'hma' => (int) 2, 'vpl' => (int) 2, 'sun' => (int) 7, 'lal' => (int) 9, 'lja' => (int) 5, 'lonja' => (int) 9, 'lsa' => (int) 5, 'mes' => (int) 8, 'mpo' => (int) 3, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 10, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 15, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 9, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 9, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 6, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 5, 'spa' => (int) 10, 'tar' => (int) 10, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 11, 'tpr' => (int) 11, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 4, 'vmu' => (int) 7, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb301640' $species_info = array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ) $local_species = 'egut' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000856', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p00010' => 'bna', 'A03p04160' => 'bna', 'A03p17160' => 'bna', 'A04p23370' => 'bna', 'A05p14860' => 'bna', 'A08p37020' => 'bna', 'A09p08050' => 'bna', 'A09p66800' => 'bna', 'A09p67940' => 'bna', 'A10p02680' => 'bna', 'A10p05320' => 'bna', 'Aa31LG1G20560' => 'aar', 'Aa31LG1G20610' => 'aar', 'Aa31LG1G7810' => 'aar', 'Aa31LG5G3590' => 'aar', 'Aa31LG5G6140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3819' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4683' => 'aag', 'Actinidia04480' => 'ach', 'Actinidia05466' => 'ach', 'Actinidia08445' => 'ach', 'Actinidia21170' => 'ach', 'Actinidia24812' => 'ach', 'Actinidia24951' => 'ach', 'Actinidia40088' => 'ach', 'Ah.02g111660' => 'amhyb', 'Ah.11g048900' => 'amhyb', 'Ah.11g049910' => 'amhyb', 'AL1G13870' => 'aly', 'AL1G13880' => 'aly', 'AL1G16760' => 'aly', 'AL390U10020' => 'aly', 'AL4G25520' => 'aly', 'AL6G19890' => 'aly', 'AL6G19900' => 'aly', 'AL6G19910' => 'aly', 'AL8G40100' => 'aly', 'Aqoxy2G03562' => 'aox', 'Aqoxy5G00316' => 'aox', 'Aqoxy5G00926' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1628KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1H403S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2FU6SJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.882I6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8YRY2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YN1SN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AF70II' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZA8L1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F916KL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHRD8H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KTZ8QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S22EMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8M29T' => 'arhy', 'AT1G04270' => 'ath', 'AT1G04280' => 'ath', 'AT1G06750' => 'ath', 'AT1G33850' => 'ath', 'AT2G30630' => 'ath', 'AT5G09490' => 'ath', 'AT5G09500' => 'ath', 'AT5G09510' => 'ath', 'AT5G43640' => 'ath', 'AT5G63070' => 'ath', 'ATR0605G315' => 'atr', 'Atru.chr11.175' => 'acertr', 'Atru.chr11.653' => 'acertr', 'Atru.chr3.1616' => 'acertr', 'Atru.chr4.2230' => 'acertr', 'Atru.chr4.2232' => 'acertr', 'Atru.chr5.1598' => 'acertr', 'Atru.chr5.1600' => 'acertr', 'Atru.chr5.2188' => 'acertr', 'AUR62008326' => 'cqu', 'AUR62011922' => 'cqu', 'AUR62011924' => 'cqu', 'AUR62021771' => 'cqu', 'AUR62032237' => 'cqu', 'AUR62032240' => 'cqu', 'BcaB01g05572' => 'bca', 'BcaB02g10337' => 'bca', 'BcaB04g19944' => 'bca', 'BcaB05g21548' => 'bca', 'BcaB05g21549' => 'bca', 'BcaB05g23227' => 'bca', 'BcaB06g26256' => 'bca', 'BcaB06g26257' => 'bca', 'BcaB06g28379' => 'bca', 'BcaC02g11159' => 'bca', 'BcaC03g13258' => 'bca', 'BcaC03g13259' => 'bca', 'BcaC05g24456' => 'bca', 'BcaC05g24457' => 'bca', 'BcaC07g36922' => 'bca', 'BcaC07g36923' => 'bca', 'BcaC07g42050' => 'bca', 'BcaC07g42176' => 'bca', 'BcaC07g42195' => 'bca', 'BcaC07g42196' => 'bca', 'BcaNung06674' => 'bca', 'BolC2t06351H' => 'bol', 'BolC2t06352H' => 'bol', 'BolC3t12993H' => 'bol', 'BolC4t23525H' => 'bol', 'BolC4t27475H' => 'bol', 'BolC5t29025H' => 'bol', 'BolC5t29026H' => 'bol', 'BolC8t46898H' => 'bol', 'BolC8t46899H' => 'bol', 'BolC8t52630H' => 'bol', 'BolC8t52765H' => 'bol', 'BolC9t53824H' => 'bol', 'BraA03t09760Z' => 'bra', 'BraA03t10990Z' => 'bra', 'BraA05t20413Z' => 'bra', 'BraA08t35602Z' => 'bra', 'BraA09t36458Z' => 'bra', 'BraA09t42018Z' => 'bra', 'BraA09t42129Z' => 'bra', 'BraA10t42536Z' => 'bra', 'BraA10t42537Z' => 'bra', 'C01p10690' => 'bna', 'C02p03890' => 'bna', 'C02p03900' => 'bna', 'C03p04620' => 'bna', 'C04p19870' => 'bna', 'C04p59670' => 'bna', 'C05p02460' => 'bna', 'C05p02470' => 'bna', 'C08p00980' => 'bna', 'C08p00990' => 'bna', 'C08p51030' => 'bna', 'C08p52360' => 'bna', 'C09p09120' => 'bna', 'CAN.G19.15' => 'can', 'CAN.G251.10' => 'can', 'CAN.G251.9' => 'can', 'CAN.G398.24' => 'can', 'CAN.G410.32' => 'can', 'CAN.G881.2' => 'can', 'CANSAT01G3025' => 'cansat', 'CANSAT78G1211' => 'cansat', 'CANSAT78G1218' => 'cansat', 'CANSAT78G1521' => 'cansat', 'CANSAT78G1670' => 'cansat', 'CARHR003600' => 'chi', 'CARHR003610' => 'chi', 'CARHR006290' => 'chi', 'CARHR006430' => 'chi', 'CARHR124110' => 'chi', 'CARHR203870' => 'chi', 'CARHR203880' => 'chi', 'CARHR203890' => 'chi', 'CARHR276880' => 'chi', 'Carub.0001s0346' => 'cru', 'Carub.0001s0347' => 'cru', 'Carub.0001s0607' => 'cru', 'Carub.0003s2768' => 'cru', 'Carub.0003s2769' => 'cru', 'Carub.0004s1178' => 'cru', 'Carub.0006s0806' => 'cru', 'Carub.0006s0807' => 'cru', 'Carub.0006s0808' => 'cru', 'Carub.0008s0501' => 'cru', 'Carub.0008s2379' => 'cru', 'Ca_08655_v3' => 'car', 'Ca_08922_v3' => 'car', 'Ca_08923_v3' => 'car', 'Ca_09119_v3' => 'car', 'Ca_09703_v3' => 'car', 'Ca_09705_v3' => 'car', 'Ca_09835_v3' => 'car', 'Ca_26403_v3' => 'car', 'Ca_30719_v3' => 'car', 'CBR_g17958' => 'cbr', 'CBR_g40516' => 'cbr', 'Cc00_g05350' => 'ccan', 'Cc01_g18690' => 'ccan', 'Cc03_g04830' => 'ccan', 'Cc03_g04850' => 'ccan', 'CDE02G4469' => 'cde', 'CDE06G0883' => 'cde', 'CDE06G1295' => 'cde', 'CDE06G1390' => 'cde', 'CDE07G0584' => 'cde', 'CDE07G1084' => 'cde', 'CDE08G1259' => 'cde', 'Cfa002341' => 'cfa', 'Cfa024337' => 'cfa', 'Ciclev10004749m.g' => 'ccl', 'Ciclev10006127m.g' => 'ccl', 'Ciclev10019720m.g' => 'ccl', 'Ciclev10022652m.g' => 'ccl', 'CiPaw.01G190400' => 'cil', 'CiPaw.01G190500' => 'cil', 'CiPaw.02G116400' => 'cil', 'CiPaw.02G116500' => 'cil', 'CiPaw.04G183000' => 'cil', 'CiPaw.04G183300' => 'cil', 'ClCG05G004610' => 'cla', 'ClCG05G004620' => 'cla', 'ClCG06G006730' => 'cla', 'ClCG06G006740' => 'cla', 'ClCG11G003690' => 'cla', 'COL.COLO4_08276' => 'col', 'COL.COLO4_08277' => 'col', 'COL.COLO4_15787' => 'col', 'COL.COLO4_15789' => 'col', 'Cpa.g.c44815' => 'cpa', 'Cpa.g.sc52.144' => 'cpa', 'Cpa.g.sc58.46' => 'cpa', 'Cpa.g.sc58.47' => 'cpa', 'Cre08.g360900' => 'cre', 'CsaV3_2G013030' => 'csa', 'CsaV3_2G013050' => 'csa', 'CsaV3_2G015620' => 'csa', 'CsaV3_3G012590' => 'csa', 'CsaV3_3G012600' => 'csa', 'CSS0001641' => 'camsi', 'CSS0008310' => 'camsi', 'CSS0013011' => 'camsi', 'CSS0017147' => 'camsi', 'CSS0022970' => 'camsi', 'CSS0025655' => 'camsi', 'CSS0028665' => 'camsi', 'CSS0029117' => 'camsi', 'CSS0032024' => 'camsi', 'CSS0039681' => 'camsi', 'CSS0046516' => 'camsi', 'CSS0050307' => 'camsi', 'DCAR_005871' => 'dca', 'DCAR_007342' => 'dca', 'DCAR_024228' => 'dca', 'DCAR_027277' => 'dca', 'DCAR_030718' => 'dca', 'Dinv20287' => 'din', 'Dinv22461' => 'din', 'Dinv22464' => 'din', 'Dinv29912' => 'din', 'Dinv29913' => 'din', 'Dinv34580' => 'din', 'Dinv34582' => 'din', 'Dinv44632' => 'din', 'Duzib052G0266' => 'dzi', 'Duzib133G0907' => 'dzi', 'Duzib133G1034' => 'dzi', 'Duzib138G0207' => 'dzi', 'Duzib138G0491' => 'dzi', 'Duzib151G0812' => 'dzi', 'Duzib151G1166' => 'dzi', 'Duzib168G0192' => 'dzi', 'Duzib211G0077' => 'dzi', 'Duzib212G0429' => 'dzi', 'Duzib212G0472' => 'dzi', 'ECA233G2617' => 'eca', 'ECA236G4188' => 'eca', 'ECA240G0936' => 'eca', 'ECA240G1129' => 'eca', 'ECA247G0623' => 'eca', 'EL10Ac5g10451' => 'bvu', 'EL10Ac5g10453' => 'bvu', 'EL10Ac5g10894' => 'bvu', 'Eucgr.H00192' => 'egr', 'Eucgr.H00193' => 'egr', 'Eucgr.H00194' => 'egr', 'Eucgr.J01562' => 'egr', 'Eucgr.K03301' => 'egr', 'FAN02G0632' => 'fan', 'FAN05G5378' => 'fan', 'FAN09G3247' => 'fan', 'FAN12G0435' => 'fan', 'FAN12G2426' => 'fan', 'FAN14G1707' => 'fan', 'FAN14G4725' => 'fan', 'FAN15G2071' => 'fan', 'FAN17G3065' => 'fan', 'FAN19G1376' => 'fan', 'FAN20G0354' => 'fan', 'FAN20G2429' => 'fan', 'FAN20G2658' => 'fan', 'FAN24G2343' => 'fan', 'FAN27G2362' => 'fan', 'FAN28G1765' => 'fan', 'FvH4_1g16020' => 'fve', 'FvH4_2g04890' => 'fve', 'FvH4_2g22270' => 'fve', 'FvH4_4g02630' => 'fve', 'FvH4_4g02640' => 'fve', 'FvH4_6g02650' => 'fve', 'Glyma.02G140600' => 'gma', 'Glyma.03G159900' => 'gma', 'Glyma.05G234800' => 'gma', 'Glyma.07G269600' => 'gma', 'Glyma.08G042300' => 'gma', 'Glyma.10G033500' => 'gma', 'Glyma.10G185200' => 'gma', 'Glyma.17G004300' => 'gma', 'Glyma.19G161900' => 'gma', 'Glyma.20G205100' => 'gma', 'Glyma.20G205200' => 'gma', 'Gohir.A01G139101' => 'ghi', 'Gohir.A02G035600' => 'ghi', 'Gohir.A02G117901' => 'ghi', 'Gohir.A07G210100' => 'ghi', 'Gohir.A07G210200' => 'ghi', 'Gohir.A08G061100' => 'ghi', 'Gohir.A09G223000' => 'ghi', 'Gohir.A09G223100' => 'ghi', 'Gohir.A10G113900' => 'ghi', 'Gohir.A10G114000' => 'ghi', 'Gohir.D02G042300' => 'ghi', 'Gohir.D07G216100' => 'ghi', 'Gohir.D07G216200' => 'ghi', 'Gohir.D08G070400' => 'ghi', 'Gohir.D09G225000' => 'ghi', 'Gohir.D09G225100' => 'ghi', 'Gohir.D10G152300' => 'ghi', 'Gohir.D10G153200' => 'ghi', 'Gohir.D11G133701' => 'ghi', 'Gorai.004G074100' => 'gra', 'Gorai.005G046800' => 'gra', 'Gorai.006G246500' => 'gra', 'Gorai.006G246600' => 'gra', 'Gorai.007G142900' => 'gra', 'Gorai.011G171000' => 'gra', 'Gorai.011G171100' => 'gra', 'Gorai.013G104300' => 'gra', 'Gorai.013G104400' => 'gra', 'GSVIVG01000754001' => 'vvi', 'GSVIVG01000756001' => 'vvi', 'GSVIVG01010903001' => 'vvi', 'GSVIVG01017623001' => 'vvi', 'GSVIVG01018113001' => 'vvi', 'GSVIVG01018116001' => 'vvi', 'GSVIVG01018118001' => 'vvi', 'HanXRQChr03g0076211' => 'han', 'HanXRQChr03g0092431' => 'han', 'HanXRQChr03g0092441' => 'han', 'HanXRQChr03g0092591' => 'han', 'HanXRQChr03g0092671' => 'han', 'HanXRQChr03g0092681' => 'han', 'HanXRQChr03g0092691' => 'han', 'HanXRQChr03g0092701' => 'han', 'HanXRQChr03g0092721' => 'han', 'HanXRQChr03g0092731' => 'han', 'HanXRQChr04g0113681' => 'han', 'HanXRQChr10g0281371' => 'han', 'HanXRQChr11g0337141' => 'han', 'HanXRQChr13g0424521' => 'han', 'HanXRQChr13g0424531' => 'han', 'HanXRQChr13g0424541' => 'han', 'HanXRQChr16g0498221' => 'han', 'Haze_04377' => 'cav', 'Haze_11298' => 'cav', 'Haze_24547' => 'cav', 'Haze_24550' => 'cav', 'Haze_26587' => 'cav', 'Hma1.2p1_0650F.1_g195410' => 'hma', 'Hma1.2p1_0893F.1_g233470' => 'hma', 'HPP92_006508' => 'vpl', 'HPP92_024780' => 'vpl', 'Hund02688' => 'sun', 'Hund09380' => 'sun', 'Hund09381' => 'sun', 'Hund09832' => 'sun', 'Hund09833' => 'sun', 'Hund11351' => 'sun', 'Hund11513' => 'sun', 'Lalb_Chr06g0162591' => 'lal', 'Lalb_Chr06g0162601' => 'lal', 'Lalb_Chr06g0169321' => 'lal', 'Lalb_Chr09g0330951' => 'lal', 'Lalb_Chr16g0387631' => 'lal', 'Lalb_Chr21g0306241' => 'lal', 'Lalb_Chr25g0290051' => 'lal', 'Lalb_Chr25g0290061' => 'lal', 'Lalb_Chr25g0290071' => 'lal', 'Lj1g0003876' => 'lja', 'Lj1P1207T36' => 'lonja', 'Lj2C1156G12' => 'lonja', 'Lj3A793G39' => 'lonja', 'Lj3C580G2' => 'lonja', 'Lj3C780G2' => 'lonja', 'Lj3C780T4' => 'lonja', 'Lj3C793G9' => 'lonja', 'Lj4g0012960' => 'lja', 'Lj5g0021252' => 'lja', 'Lj5g0021484' => 'lja', 'Lj5g0024528' => 'lja', 'Lj6A399T12' => 'lonja', 'Lj6A656G65' => 'lonja', 'Lsat_1_v5_gn_3_125500' => 'lsa', 'Lsat_1_v5_gn_3_125540' => 'lsa', 'Lsat_1_v5_gn_5_72701' => 'lsa', 'Lsat_1_v5_gn_8_91560' => 'lsa', 'Lsat_1_v5_gn_9_9640' => 'lsa', 'Manes.01G200600' => 'mes', 'Manes.01G200700' => 'mes', 'Manes.03G168900' => 'mes', 'Manes.03G169000' => 'mes', 'Manes.05G085801' => 'mes', 'Manes.05G086200' => 'mes', 'Manes.15G036700' => 'mes', 'Manes.15G036900' => 'mes', 'Mapoly0004s0172' => 'mpo', 'Mapoly0023s0001' => 'mpo', 'Mapoly0142s0012' => 'mpo', 'MBI01_g32854_MAGBIO' => 'mbi', 'MBI11_g24427_MAGBIO' => 'mbi', 'MBI11_g47319_MAGBIO' => 'mbi', 'MCO01G433' => 'mco', 'MD00G1187800' => 'mdo', 'MD04G1226500' => 'mdo', 'MD05G1203900' => 'mdo', 'MD10G1191100' => 'mdo', 'MD12G1243500' => 'mdo', 'MD13G1207000' => 'mdo', 'MD13G1207100' => 'mdo', 'MD16G1208600' => 'mdo', 'Medtr1g050352' => 'mtr', 'Medtr1g070385' => 'mtr', 'Medtr1g070450' => 'mtr', 'Medtr1g075200' => 'mtr', 'Medtr1g075250' => 'mtr', 'Medtr1g075260' => 'mtr', 'Medtr1g475250' => 'mtr', 'Medtr4g075450' => 'mtr', 'Medtr7g096300' => 'mtr', 'Medtr8g105110' => 'mtr', 'MELO3C006470.2' => 'cme', 'MELO3C006471.2' => 'cme', 'MELO3C020772.2' => 'cme', 'MELO3C026780.2' => 'cme', 'MELO3C026781.2' => 'cme', 'Migut.D00390' => 'egut', 'Migut.G00435' => 'egut', 'Migut.G00436' => 'egut', 'Migut.G00718' => 'egut', 'MSTRG.21891' => 'ama', 'MSTRG.26910' => 'ama', 'MSTRG.4099' => 'ama', 'MSTRG.9925' => 'ama', 'Nitab4.5_0000165g0010' => 'nta', 'Nitab4.5_0000209g0180' => 'nta', 'Nitab4.5_0000244g0440' => 'nta', 'Nitab4.5_0000525g0220' => 'nta', 'Nitab4.5_0001597g0020' => 'nta', 'Nitab4.5_0001878g0040' => 'nta', 'Nitab4.5_0001878g0060' => 'nta', 'Nitab4.5_0002838g0100' => 'nta', 'Nitab4.5_0002838g0120' => 'nta', 'Nitab4.5_0004798g0030' => 'nta', 'Nitab4.5_0005420g0010' => 'nta', 'Nitab4.5_0005507g0010' => 'nta', 'Nitab4.5_0005574g0020' => 'nta', 'Nitab4.5_0005838g0010' => 'nta', 'Nitab4.5_0010580g0020' => 'nta', 'Nn1g02599' => 'nnu', 'Nn1g02608' => 'nnu', 'Nn3g17742' => 'nnu', 'Nn3g19534' => 'nnu', 'Nn3g19535' => 'nnu', 'Oeu008790.1' => 'oeu', 'Oeu008792.1' => 'oeu', 'Oeu032590.1' => 'oeu', 'Oeu035349.1' => 'oeu', 'Oeu049791.1' => 'oeu', 'Os01g0774500' => 'osa', 'Os03g0628800' => 'osa', 'Os03g0798600' => 'osa', 'Os05g0508800' => 'osa', 'Peaxi162Scf00036g02018' => 'pax', 'Peaxi162Scf00578g00032' => 'pax', 'Peaxi162Scf00578g00317' => 'pax', 'Peaxi162Scf00785g00114' => 'pax', 'Peaxi162Scf00813g00119' => 'pax', 'Peaxi162Scf00906g00227' => 'pax', 'PGR004G0875' => 'pgr', 'PGR004G2424' => 'pgr', 'PGR031G1239' => 'pgr', 'PGR031G2474' => 'pgr', 'PGR044G0423' => 'pgr', 'PGSC0003DMG400001128' => 'stu', 'PGSC0003DMG400007336' => 'stu', 'PGSC0003DMG400016318' => 'stu', 'PGSC0003DMG400016319' => 'stu', 'PGSC0003DMG400018074' => 'stu', 'Phvul.001G157700' => 'pvu', 'Phvul.002G148550' => 'pvu', 'Phvul.002G320200' => 'pvu', 'Phvul.003G089200' => 'pvu', 'Phvul.007G126000' => 'pvu', 'Phvul.007G126100' => 'pvu', 'Phvul.007G178000' => 'pvu', 'Phvul.007G178200' => 'pvu', 'Potri.002G043000' => 'ptr', 'Potri.002G043200' => 'ptr', 'Potri.003G123750' => 'ptr', 'Potri.005G055401' => 'ptr', 'Potri.005G219700' => 'ptr', 'Potri.005G220000' => 'ptr', 'Potri.008G161901' => 'ptr', 'Potri.008G162000' => 'ptr', 'Potri.008G162400' => 'ptr', 'Potri.010G076900' => 'ptr', 'Pp3c12_9180' => 'ppa', 'Pp3c13_19770' => 'ppa', 'Pp3c14_22950' => 'ppa', 'Pp3c16_12160' => 'ppa', 'Pp3c27_7820' => 'ppa', 'Pp3c2_3490' => 'ppa', 'Pp3c3_23700' => 'ppa', 'Pp3c3_36520' => 'ppa', 'Pp3c4_15250' => 'ppa', 'PRCOL_00007002' => 'pco', 'Prupe.1G030600' => 'ppe', 'Prupe.1G030700' => 'ppe', 'Prupe.6G345200' => 'ppe', 'Prupe.8G230300' => 'ppe', 'Prupe.8G230500' => 'ppe', 'Psat3g059600' => 'psa', 'Psat5g200920' => 'psa', 'Psat6g056440' => 'psa', 'Psat6g057360' => 'psa', 'Psat6g134120' => 'psa', 'Psat6g134160' => 'psa', 'Psat7g008640' => 'psa', 'Psat7g185240' => 'psa', 'PSO017G1330' => 'pso', 'PSO063G6097' => 'pso', 'PSO170G0835' => 'pso', 'PSO170G2499' => 'pso', 'PSO210G5058' => 'pso', 'PSO210G6154' => 'pso', 'PSO585G0031' => 'pso', 'PSO832G0264' => 'pso', 'PSO832G4288' => 'pso', 'QL03p027355' => 'qlo', 'QL03p027430' => 'qlo', 'QL04p081380' => 'qlo', 'QL06p015642' => 'qlo', 'QL06p015650' => 'qlo', 'QL06p015686' => 'qlo', 'QL12p042927' => 'qlo', 'QL93p1863_0035' => 'qlo', 'RcHm_v2.0_Chr3g0450581' => 'rch', 'RcHm_v2.0_Chr4g0390371' => 'rch', 'RcHm_v2.0_Chr4g0390381' => 'rch', 'RcHm_v2.0_Chr4g0390491' => 'rch', 'RcHm_v2.0_Chr4g0390501' => 'rch', 'RcHm_v2.0_Chr6g0289231' => 'rch', 'Rhsim04G0190400' => 'rsi', 'Rhsim04G0190500' => 'rsi', 'Rhsim04G0190600' => 'rsi', 'Rhsim13G0031400' => 'rsi', 'Rhsim13G0165600' => 'rsi', 'RhsimUnG0114600' => 'rsi', 'RhsimUnG0114700' => 'rsi', 'Sabra02G0034800' => 'sbr', 'Sabra02G0035100' => 'sbr', 'Sabra05G0168600' => 'sbr', 'Sabra05G0168800' => 'sbr', 'Sabra08G0123700' => 'sbr', 'Sabra10G0031900' => 'sbr', 'Sabra13G0039000' => 'sbr', 'SalBow2G0782' => 'sbo', 'SalBow2G1403' => 'sbo', 'SalBow4G0074' => 'sbo', 'SalBow4G2635' => 'sbo', 'SalBow5G3010' => 'sbo', 'Sc05g0000870' => 'sci', 'Sc05g0000890' => 'sci', 'Sc13g0005000' => 'sci', 'Sc13g0005030' => 'sci', 'Sc19g0003790' => 'sci', 'Sc19g0003800' => 'sci', 'Sed0003467' => 'sed', 'Sed0009355' => 'sed', 'Sed0009894' => 'sed', 'Sed0011972' => 'sed', 'Sed0021483' => 'sed', 'Sed0021750' => 'sed', 'Sed0026279' => 'sed', 'SEGI_05312' => 'sgi', 'SEGI_10112' => 'sgi', 'SEGI_15835' => 'sgi', 'SEGI_30386' => 'sgi', 'SEGI_34122' => 'sgi', 'SEGI_35063' => 'sgi', 'SGA_v2.0_scaffold101G29794' => 'sas', 'SGA_v2.0_scaffold1G00573' => 'sas', 'SGA_v2.0_scaffold79G25637' => 'sas', 'SGA_v2.0_scaffold88G27283' => 'sas', 'SGA_v2.0_scaffold88G27285' => 'sas', 'SGA_v2.0_scaffold88G27331' => 'sas', 'SHI09937' => 'shi', 'SMO119G0302' => 'smo', 'SMO137G0231' => 'smo', 'SMO367G1151' => 'smo', 'Solyc02g082000.3' => 'sly', 'Solyc06g031670.3' => 'sly', 'Solyc06g053810.3' => 'sly', 'Solyc07g025457.1' => 'sly', 'Solyc08g059740.1' => 'sly', 'Solyc08g059750.3' => 'sly', 'Solyc09g083370.3' => 'sly', 'Solyc12g038950.3' => 'sly', 'Sopen02g026630' => 'spe', 'Sopen06g018930' => 'spe', 'Sopen06g018940' => 'spe', 'Sopen08g009460' => 'spe', 'Sopen09g032290' => 'spe', 'Sp1g03080' => 'spa', 'Sp1g03090' => 'spa', 'Sp1g05480' => 'spa', 'Sp2g07860' => 'spa', 'Sp2g08430' => 'spa', 'Sp2g08440' => 'spa', 'Sp2g26200' => 'spa', 'Sp4g13170' => 'spa', 'Sp6g33840' => 'spa', 'SpUn1204_0010' => 'spa', 'TAR365G0908' => 'tar', 'TAR381G1270' => 'tar', 'TAR381G1651' => 'tar', 'TAR625G1131' => 'tar', 'TAR633G0962' => 'tar', 'TAR633G1729' => 'tar', 'TAR633G1864' => 'tar', 'TAR636G0221' => 'tar', 'TAR636G0314' => 'tar', 'TAR636G3202' => 'tar', 'THA.LOC104800805' => 'tha', 'THA.LOC104801096' => 'tha', 'THA.LOC104801555' => 'tha', 'THA.LOC104808491' => 'tha', 'THA.LOC104808595' => 'tha', 'THA.LOC104815985' => 'tha', 'THA.LOC104822250' => 'tha', 'THA.LOC104826071' => 'tha', 'Thecc.01G265200' => 'tca', 'Thecc.01G265300' => 'tca', 'Thecc.01G265700' => 'tca', 'Thecc.03G109100' => 'tca', 'Thecc.04G245900' => 'tca', 'Thecc.04G246000' => 'tca', 'Thhalv10003334m.g' => 'esa', 'Thhalv10005508m.g' => 'esa', 'Thhalv10005643m.g' => 'esa', 'Thhalv10007316m.g' => 'esa', 'Thhalv10009006m.g' => 'esa', 'Thhalv10009309m.g' => 'esa', 'Thhalv10014917m.g' => 'esa', 'Thhalv10014919m.g' => 'esa', 'Thhalv10015393m.g' => 'esa', 'Thhalv10016515m.g' => 'esa', 'Thhalv10029242m.g' => 'esa', 'TPR.G16654' => 'tpr', 'TPR.G20589' => 'tpr', 'TPR.G23029' => 'tpr', 'TPR.G27731' => 'tpr', 'TPR.G28889' => 'tpr', 'TPR.G28899' => 'tpr', 'TPR.G30846' => 'tpr', 'TPR.G5452' => 'tpr', 'TPR.G5713' => 'tpr', 'TPR.G9046' => 'tpr', 'TPR.G9061' => 'tpr', 'TWI09G1075' => 'twi', 'TWI12G0806' => 'twi', 'TWI18G0108' => 'twi', 'TWI53G1361' => 'twi', 'TWI73G0185' => 'twi', 'TWI73G0427' => 'twi', 'unitig_37.g12001' => 'ugi', 'unitig_747.g21660' => 'ugi', 'unitig_748.g7232' => 'ugi', 'unitig_748.g7315' => 'ugi', 'unitig_85.g27262' => 'ugi', 'unitig_92.g28220' => 'ugi', 'vmacro02632' => 'vma', 'vmacro08410' => 'vma', 'vmacro08411' => 'vma', 'vmacro15407' => 'vma', 'VMungo0251G3619' => 'vmu', 'VMungo0720G1204' => 'vmu', 'VMungo0720G1918' => 'vmu', 'VMungo0720G2387' => 'vmu', 'VMungo0720G2961' => 'vmu', 'VMungo1215G2154' => 'vmu', 'VMungo1383G2411' => 'vmu', 'Zm00001eb051130' => 'zma', 'Zm00001eb116830' => 'zma', 'Zm00001eb116850' => 'zma', 'Zm00001eb151740' => 'zma', 'Zm00001eb292360' => 'zma', 'Zm00001eb301640' => 'zma' ), 'gf_id' => 'HOM05D000856', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000856' ), 'data_identifier' => 'HOM05D000856', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000856', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p00010' => 'bna', 'A03p04160' => 'bna', 'A03p17160' => 'bna', 'A04p23370' => 'bna', 'A05p14860' => 'bna', 'A08p37020' => 'bna', 'A09p08050' => 'bna', 'A09p66800' => 'bna', 'A09p67940' => 'bna', 'A10p02680' => 'bna', 'A10p05320' => 'bna', 'Aa31LG1G20560' => 'aar', 'Aa31LG1G20610' => 'aar', 'Aa31LG1G7810' => 'aar', 'Aa31LG5G3590' => 'aar', 'Aa31LG5G6140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3819' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4683' => 'aag', 'Actinidia04480' => 'ach', 'Actinidia05466' => 'ach', 'Actinidia08445' => 'ach', 'Actinidia21170' => 'ach', 'Actinidia24812' => 'ach', 'Actinidia24951' => 'ach', 'Actinidia40088' => 'ach', 'Ah.02g111660' => 'amhyb', 'Ah.11g048900' => 'amhyb', 'Ah.11g049910' => 'amhyb', 'AL1G13870' => 'aly', 'AL1G13880' => 'aly', 'AL1G16760' => 'aly', 'AL390U10020' => 'aly', 'AL4G25520' => 'aly', 'AL6G19890' => 'aly', 'AL6G19900' => 'aly', 'AL6G19910' => 'aly', 'AL8G40100' => 'aly', 'Aqoxy2G03562' => 'aox', 'Aqoxy5G00316' => 'aox', 'Aqoxy5G00926' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1628KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1H403S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2FU6SJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.882I6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8YRY2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YN1SN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AF70II' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZA8L1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F916KL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHRD8H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KTZ8QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S22EMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8M29T' => 'arhy', 'AT1G04270' => 'ath', 'AT1G04280' => 'ath', 'AT1G06750' => 'ath', 'AT1G33850' => 'ath', 'AT2G30630' => 'ath', 'AT5G09490' => 'ath', 'AT5G09500' => 'ath', 'AT5G09510' => 'ath', 'AT5G43640' => 'ath', 'AT5G63070' => 'ath', 'ATR0605G315' => 'atr', 'Atru.chr11.175' => 'acertr', 'Atru.chr11.653' => 'acertr', 'Atru.chr3.1616' => 'acertr', 'Atru.chr4.2230' => 'acertr', 'Atru.chr4.2232' => 'acertr', 'Atru.chr5.1598' => 'acertr', 'Atru.chr5.1600' => 'acertr', 'Atru.chr5.2188' => 'acertr', 'AUR62008326' => 'cqu', 'AUR62011922' => 'cqu', 'AUR62011924' => 'cqu', 'AUR62021771' => 'cqu', 'AUR62032237' => 'cqu', 'AUR62032240' => 'cqu', 'BcaB01g05572' => 'bca', 'BcaB02g10337' => 'bca', 'BcaB04g19944' => 'bca', 'BcaB05g21548' => 'bca', 'BcaB05g21549' => 'bca', 'BcaB05g23227' => 'bca', 'BcaB06g26256' => 'bca', 'BcaB06g26257' => 'bca', 'BcaB06g28379' => 'bca', 'BcaC02g11159' => 'bca', 'BcaC03g13258' => 'bca', 'BcaC03g13259' => 'bca', 'BcaC05g24456' => 'bca', 'BcaC05g24457' => 'bca', 'BcaC07g36922' => 'bca', 'BcaC07g36923' => 'bca', 'BcaC07g42050' => 'bca', 'BcaC07g42176' => 'bca', 'BcaC07g42195' => 'bca', 'BcaC07g42196' => 'bca', 'BcaNung06674' => 'bca', 'BolC2t06351H' => 'bol', 'BolC2t06352H' => 'bol', 'BolC3t12993H' => 'bol', 'BolC4t23525H' => 'bol', 'BolC4t27475H' => 'bol', 'BolC5t29025H' => 'bol', 'BolC5t29026H' => 'bol', 'BolC8t46898H' => 'bol', 'BolC8t46899H' => 'bol', 'BolC8t52630H' => 'bol', 'BolC8t52765H' => 'bol', 'BolC9t53824H' => 'bol', 'BraA03t09760Z' => 'bra', 'BraA03t10990Z' => 'bra', 'BraA05t20413Z' => 'bra', 'BraA08t35602Z' => 'bra', 'BraA09t36458Z' => 'bra', 'BraA09t42018Z' => 'bra', 'BraA09t42129Z' => 'bra', 'BraA10t42536Z' => 'bra', 'BraA10t42537Z' => 'bra', 'C01p10690' => 'bna', 'C02p03890' => 'bna', 'C02p03900' => 'bna', 'C03p04620' => 'bna', 'C04p19870' => 'bna', 'C04p59670' => 'bna', 'C05p02460' => 'bna', 'C05p02470' => 'bna', 'C08p00980' => 'bna', 'C08p00990' => 'bna', 'C08p51030' => 'bna', 'C08p52360' => 'bna', 'C09p09120' => 'bna', 'CAN.G19.15' => 'can', 'CAN.G251.10' => 'can', 'CAN.G251.9' => 'can', 'CAN.G398.24' => 'can', 'CAN.G410.32' => 'can', 'CAN.G881.2' => 'can', 'CANSAT01G3025' => 'cansat', 'CANSAT78G1211' => 'cansat', 'CANSAT78G1218' => 'cansat', 'CANSAT78G1521' => 'cansat', 'CANSAT78G1670' => 'cansat', 'CARHR003600' => 'chi', 'CARHR003610' => 'chi', 'CARHR006290' => 'chi', 'CARHR006430' => 'chi', 'CARHR124110' => 'chi', 'CARHR203870' => 'chi', 'CARHR203880' => 'chi', 'CARHR203890' => 'chi', 'CARHR276880' => 'chi', 'Carub.0001s0346' => 'cru', 'Carub.0001s0347' => 'cru', 'Carub.0001s0607' => 'cru', 'Carub.0003s2768' => 'cru', 'Carub.0003s2769' => 'cru', 'Carub.0004s1178' => 'cru', 'Carub.0006s0806' => 'cru', 'Carub.0006s0807' => 'cru', 'Carub.0006s0808' => 'cru', 'Carub.0008s0501' => 'cru', 'Carub.0008s2379' => 'cru', 'Ca_08655_v3' => 'car', 'Ca_08922_v3' => 'car', 'Ca_08923_v3' => 'car', 'Ca_09119_v3' => 'car', 'Ca_09703_v3' => 'car', 'Ca_09705_v3' => 'car', 'Ca_09835_v3' => 'car', 'Ca_26403_v3' => 'car', 'Ca_30719_v3' => 'car', 'CBR_g17958' => 'cbr', 'CBR_g40516' => 'cbr', 'Cc00_g05350' => 'ccan', 'Cc01_g18690' => 'ccan', 'Cc03_g04830' => 'ccan', 'Cc03_g04850' => 'ccan', 'CDE02G4469' => 'cde', 'CDE06G0883' => 'cde', 'CDE06G1295' => 'cde', 'CDE06G1390' => 'cde', 'CDE07G0584' => 'cde', 'CDE07G1084' => 'cde', 'CDE08G1259' => 'cde', 'Cfa002341' => 'cfa', 'Cfa024337' => 'cfa', 'Ciclev10004749m.g' => 'ccl', 'Ciclev10006127m.g' => 'ccl', 'Ciclev10019720m.g' => 'ccl', 'Ciclev10022652m.g' => 'ccl', 'CiPaw.01G190400' => 'cil', 'CiPaw.01G190500' => 'cil', 'CiPaw.02G116400' => 'cil', 'CiPaw.02G116500' => 'cil', 'CiPaw.04G183000' => 'cil', 'CiPaw.04G183300' => 'cil', 'ClCG05G004610' => 'cla', 'ClCG05G004620' => 'cla', 'ClCG06G006730' => 'cla', 'ClCG06G006740' => 'cla', 'ClCG11G003690' => 'cla', 'COL.COLO4_08276' => 'col', 'COL.COLO4_08277' => 'col', 'COL.COLO4_15787' => 'col', 'COL.COLO4_15789' => 'col', 'Cpa.g.c44815' => 'cpa', 'Cpa.g.sc52.144' => 'cpa', 'Cpa.g.sc58.46' => 'cpa', 'Cpa.g.sc58.47' => 'cpa', 'Cre08.g360900' => 'cre', 'CsaV3_2G013030' => 'csa', 'CsaV3_2G013050' => 'csa', 'CsaV3_2G015620' => 'csa', 'CsaV3_3G012590' => 'csa', 'CsaV3_3G012600' => 'csa', 'CSS0001641' => 'camsi', 'CSS0008310' => 'camsi', 'CSS0013011' => 'camsi', 'CSS0017147' => 'camsi', 'CSS0022970' => 'camsi', 'CSS0025655' => 'camsi', 'CSS0028665' => 'camsi', 'CSS0029117' => 'camsi', 'CSS0032024' => 'camsi', 'CSS0039681' => 'camsi', 'CSS0046516' => 'camsi', 'CSS0050307' => 'camsi', 'DCAR_005871' => 'dca', 'DCAR_007342' => 'dca', 'DCAR_024228' => 'dca', 'DCAR_027277' => 'dca', 'DCAR_030718' => 'dca', 'Dinv20287' => 'din', 'Dinv22461' => 'din', 'Dinv22464' => 'din', 'Dinv29912' => 'din', 'Dinv29913' => 'din', 'Dinv34580' => 'din', 'Dinv34582' => 'din', 'Dinv44632' => 'din', 'Duzib052G0266' => 'dzi', 'Duzib133G0907' => 'dzi', 'Duzib133G1034' => 'dzi', 'Duzib138G0207' => 'dzi', 'Duzib138G0491' => 'dzi', 'Duzib151G0812' => 'dzi', 'Duzib151G1166' => 'dzi', 'Duzib168G0192' => 'dzi', 'Duzib211G0077' => 'dzi', 'Duzib212G0429' => 'dzi', 'Duzib212G0472' => 'dzi', 'ECA233G2617' => 'eca', 'ECA236G4188' => 'eca', 'ECA240G0936' => 'eca', 'ECA240G1129' => 'eca', 'ECA247G0623' => 'eca', 'EL10Ac5g10451' => 'bvu', 'EL10Ac5g10453' => 'bvu', 'EL10Ac5g10894' => 'bvu', 'Eucgr.H00192' => 'egr', 'Eucgr.H00193' => 'egr', 'Eucgr.H00194' => 'egr', 'Eucgr.J01562' => 'egr', 'Eucgr.K03301' => 'egr', 'FAN02G0632' => 'fan', 'FAN05G5378' => 'fan', 'FAN09G3247' => 'fan', 'FAN12G0435' => 'fan', 'FAN12G2426' => 'fan', 'FAN14G1707' => 'fan', 'FAN14G4725' => 'fan', 'FAN15G2071' => 'fan', 'FAN17G3065' => 'fan', 'FAN19G1376' => 'fan', 'FAN20G0354' => 'fan', 'FAN20G2429' => 'fan', 'FAN20G2658' => 'fan', 'FAN24G2343' => 'fan', 'FAN27G2362' => 'fan', 'FAN28G1765' => 'fan', 'FvH4_1g16020' => 'fve', 'FvH4_2g04890' => 'fve', 'FvH4_2g22270' => 'fve', 'FvH4_4g02630' => 'fve', 'FvH4_4g02640' => 'fve', 'FvH4_6g02650' => 'fve', 'Glyma.02G140600' => 'gma', 'Glyma.03G159900' => 'gma', 'Glyma.05G234800' => 'gma', 'Glyma.07G269600' => 'gma', 'Glyma.08G042300' => 'gma', 'Glyma.10G033500' => 'gma', 'Glyma.10G185200' => 'gma', 'Glyma.17G004300' => 'gma', 'Glyma.19G161900' => 'gma', 'Glyma.20G205100' => 'gma', 'Glyma.20G205200' => 'gma', 'Gohir.A01G139101' => 'ghi', 'Gohir.A02G035600' => 'ghi', 'Gohir.A02G117901' => 'ghi', 'Gohir.A07G210100' => 'ghi', 'Gohir.A07G210200' => 'ghi', 'Gohir.A08G061100' => 'ghi', 'Gohir.A09G223000' => 'ghi', 'Gohir.A09G223100' => 'ghi', 'Gohir.A10G113900' => 'ghi', 'Gohir.A10G114000' => 'ghi', 'Gohir.D02G042300' => 'ghi', 'Gohir.D07G216100' => 'ghi', 'Gohir.D07G216200' => 'ghi', 'Gohir.D08G070400' => 'ghi', 'Gohir.D09G225000' => 'ghi', 'Gohir.D09G225100' => 'ghi', 'Gohir.D10G152300' => 'ghi', 'Gohir.D10G153200' => 'ghi', 'Gohir.D11G133701' => 'ghi', 'Gorai.004G074100' => 'gra', 'Gorai.005G046800' => 'gra', 'Gorai.006G246500' => 'gra', 'Gorai.006G246600' => 'gra', 'Gorai.007G142900' => 'gra', 'Gorai.011G171000' => 'gra', 'Gorai.011G171100' => 'gra', 'Gorai.013G104300' => 'gra', 'Gorai.013G104400' => 'gra', 'GSVIVG01000754001' => 'vvi', 'GSVIVG01000756001' => 'vvi', 'GSVIVG01010903001' => 'vvi', 'GSVIVG01017623001' => 'vvi', 'GSVIVG01018113001' => 'vvi', 'GSVIVG01018116001' => 'vvi', 'GSVIVG01018118001' => 'vvi', 'HanXRQChr03g0076211' => 'han', 'HanXRQChr03g0092431' => 'han', 'HanXRQChr03g0092441' => 'han', 'HanXRQChr03g0092591' => 'han', 'HanXRQChr03g0092671' => 'han', 'HanXRQChr03g0092681' => 'han', 'HanXRQChr03g0092691' => 'han', 'HanXRQChr03g0092701' => 'han', 'HanXRQChr03g0092721' => 'han', 'HanXRQChr03g0092731' => 'han', 'HanXRQChr04g0113681' => 'han', 'HanXRQChr10g0281371' => 'han', 'HanXRQChr11g0337141' => 'han', 'HanXRQChr13g0424521' => 'han', 'HanXRQChr13g0424531' => 'han', 'HanXRQChr13g0424541' => 'han', 'HanXRQChr16g0498221' => 'han', 'Haze_04377' => 'cav', 'Haze_11298' => 'cav', 'Haze_24547' => 'cav', 'Haze_24550' => 'cav', 'Haze_26587' => 'cav', 'Hma1.2p1_0650F.1_g195410' => 'hma', 'Hma1.2p1_0893F.1_g233470' => 'hma', 'HPP92_006508' => 'vpl', 'HPP92_024780' => 'vpl', 'Hund02688' => 'sun', 'Hund09380' => 'sun', 'Hund09381' => 'sun', 'Hund09832' => 'sun', 'Hund09833' => 'sun', 'Hund11351' => 'sun', 'Hund11513' => 'sun', 'Lalb_Chr06g0162591' => 'lal', 'Lalb_Chr06g0162601' => 'lal', 'Lalb_Chr06g0169321' => 'lal', 'Lalb_Chr09g0330951' => 'lal', 'Lalb_Chr16g0387631' => 'lal', 'Lalb_Chr21g0306241' => 'lal', 'Lalb_Chr25g0290051' => 'lal', 'Lalb_Chr25g0290061' => 'lal', 'Lalb_Chr25g0290071' => 'lal', 'Lj1g0003876' => 'lja', 'Lj1P1207T36' => 'lonja', 'Lj2C1156G12' => 'lonja', 'Lj3A793G39' => 'lonja', 'Lj3C580G2' => 'lonja', 'Lj3C780G2' => 'lonja', 'Lj3C780T4' => 'lonja', 'Lj3C793G9' => 'lonja', 'Lj4g0012960' => 'lja', 'Lj5g0021252' => 'lja', 'Lj5g0021484' => 'lja', 'Lj5g0024528' => 'lja', 'Lj6A399T12' => 'lonja', 'Lj6A656G65' => 'lonja', 'Lsat_1_v5_gn_3_125500' => 'lsa', 'Lsat_1_v5_gn_3_125540' => 'lsa', 'Lsat_1_v5_gn_5_72701' => 'lsa', 'Lsat_1_v5_gn_8_91560' => 'lsa', 'Lsat_1_v5_gn_9_9640' => 'lsa', 'Manes.01G200600' => 'mes', 'Manes.01G200700' => 'mes', 'Manes.03G168900' => 'mes', 'Manes.03G169000' => 'mes', 'Manes.05G085801' => 'mes', 'Manes.05G086200' => 'mes', 'Manes.15G036700' => 'mes', 'Manes.15G036900' => 'mes', 'Mapoly0004s0172' => 'mpo', 'Mapoly0023s0001' => 'mpo', 'Mapoly0142s0012' => 'mpo', 'MBI01_g32854_MAGBIO' => 'mbi', 'MBI11_g24427_MAGBIO' => 'mbi', 'MBI11_g47319_MAGBIO' => 'mbi', 'MCO01G433' => 'mco', 'MD00G1187800' => 'mdo', 'MD04G1226500' => 'mdo', 'MD05G1203900' => 'mdo', 'MD10G1191100' => 'mdo', 'MD12G1243500' => 'mdo', 'MD13G1207000' => 'mdo', 'MD13G1207100' => 'mdo', 'MD16G1208600' => 'mdo', 'Medtr1g050352' => 'mtr', 'Medtr1g070385' => 'mtr', 'Medtr1g070450' => 'mtr', 'Medtr1g075200' => 'mtr', 'Medtr1g075250' => 'mtr', 'Medtr1g075260' => 'mtr', 'Medtr1g475250' => 'mtr', 'Medtr4g075450' => 'mtr', 'Medtr7g096300' => 'mtr', 'Medtr8g105110' => 'mtr', 'MELO3C006470.2' => 'cme', 'MELO3C006471.2' => 'cme', 'MELO3C020772.2' => 'cme', 'MELO3C026780.2' => 'cme', 'MELO3C026781.2' => 'cme', 'Migut.D00390' => 'egut', 'Migut.G00435' => 'egut', 'Migut.G00436' => 'egut', 'Migut.G00718' => 'egut', 'MSTRG.21891' => 'ama', 'MSTRG.26910' => 'ama', 'MSTRG.4099' => 'ama', 'MSTRG.9925' => 'ama', 'Nitab4.5_0000165g0010' => 'nta', 'Nitab4.5_0000209g0180' => 'nta', 'Nitab4.5_0000244g0440' => 'nta', 'Nitab4.5_0000525g0220' => 'nta', 'Nitab4.5_0001597g0020' => 'nta', 'Nitab4.5_0001878g0040' => 'nta', 'Nitab4.5_0001878g0060' => 'nta', 'Nitab4.5_0002838g0100' => 'nta', 'Nitab4.5_0002838g0120' => 'nta', 'Nitab4.5_0004798g0030' => 'nta', 'Nitab4.5_0005420g0010' => 'nta', 'Nitab4.5_0005507g0010' => 'nta', 'Nitab4.5_0005574g0020' => 'nta', 'Nitab4.5_0005838g0010' => 'nta', 'Nitab4.5_0010580g0020' => 'nta', 'Nn1g02599' => 'nnu', 'Nn1g02608' => 'nnu', 'Nn3g17742' => 'nnu', 'Nn3g19534' => 'nnu', 'Nn3g19535' => 'nnu', 'Oeu008790.1' => 'oeu', 'Oeu008792.1' => 'oeu', 'Oeu032590.1' => 'oeu', 'Oeu035349.1' => 'oeu', 'Oeu049791.1' => 'oeu', 'Os01g0774500' => 'osa', 'Os03g0628800' => 'osa', 'Os03g0798600' => 'osa', 'Os05g0508800' => 'osa', 'Peaxi162Scf00036g02018' => 'pax', 'Peaxi162Scf00578g00032' => 'pax', 'Peaxi162Scf00578g00317' => 'pax', 'Peaxi162Scf00785g00114' => 'pax', 'Peaxi162Scf00813g00119' => 'pax', 'Peaxi162Scf00906g00227' => 'pax', 'PGR004G0875' => 'pgr', 'PGR004G2424' => 'pgr', 'PGR031G1239' => 'pgr', 'PGR031G2474' => 'pgr', 'PGR044G0423' => 'pgr', 'PGSC0003DMG400001128' => 'stu', 'PGSC0003DMG400007336' => 'stu', 'PGSC0003DMG400016318' => 'stu', 'PGSC0003DMG400016319' => 'stu', 'PGSC0003DMG400018074' => 'stu', 'Phvul.001G157700' => 'pvu', 'Phvul.002G148550' => 'pvu', 'Phvul.002G320200' => 'pvu', 'Phvul.003G089200' => 'pvu', 'Phvul.007G126000' => 'pvu', 'Phvul.007G126100' => 'pvu', 'Phvul.007G178000' => 'pvu', 'Phvul.007G178200' => 'pvu', 'Potri.002G043000' => 'ptr', 'Potri.002G043200' => 'ptr', 'Potri.003G123750' => 'ptr', 'Potri.005G055401' => 'ptr', 'Potri.005G219700' => 'ptr', 'Potri.005G220000' => 'ptr', 'Potri.008G161901' => 'ptr', 'Potri.008G162000' => 'ptr', 'Potri.008G162400' => 'ptr', 'Potri.010G076900' => 'ptr', 'Pp3c12_9180' => 'ppa', 'Pp3c13_19770' => 'ppa', 'Pp3c14_22950' => 'ppa', 'Pp3c16_12160' => 'ppa', 'Pp3c27_7820' => 'ppa', 'Pp3c2_3490' => 'ppa', 'Pp3c3_23700' => 'ppa', 'Pp3c3_36520' => 'ppa', 'Pp3c4_15250' => 'ppa', 'PRCOL_00007002' => 'pco', 'Prupe.1G030600' => 'ppe', 'Prupe.1G030700' => 'ppe', 'Prupe.6G345200' => 'ppe', 'Prupe.8G230300' => 'ppe', 'Prupe.8G230500' => 'ppe', 'Psat3g059600' => 'psa', 'Psat5g200920' => 'psa', 'Psat6g056440' => 'psa', 'Psat6g057360' => 'psa', 'Psat6g134120' => 'psa', 'Psat6g134160' => 'psa', 'Psat7g008640' => 'psa', 'Psat7g185240' => 'psa', 'PSO017G1330' => 'pso', 'PSO063G6097' => 'pso', 'PSO170G0835' => 'pso', 'PSO170G2499' => 'pso', 'PSO210G5058' => 'pso', 'PSO210G6154' => 'pso', 'PSO585G0031' => 'pso', 'PSO832G0264' => 'pso', 'PSO832G4288' => 'pso', 'QL03p027355' => 'qlo', 'QL03p027430' => 'qlo', 'QL04p081380' => 'qlo', 'QL06p015642' => 'qlo', 'QL06p015650' => 'qlo', 'QL06p015686' => 'qlo', 'QL12p042927' => 'qlo', 'QL93p1863_0035' => 'qlo', 'RcHm_v2.0_Chr3g0450581' => 'rch', 'RcHm_v2.0_Chr4g0390371' => 'rch', 'RcHm_v2.0_Chr4g0390381' => 'rch', 'RcHm_v2.0_Chr4g0390491' => 'rch', 'RcHm_v2.0_Chr4g0390501' => 'rch', 'RcHm_v2.0_Chr6g0289231' => 'rch', 'Rhsim04G0190400' => 'rsi', 'Rhsim04G0190500' => 'rsi', 'Rhsim04G0190600' => 'rsi', 'Rhsim13G0031400' => 'rsi', 'Rhsim13G0165600' => 'rsi', 'RhsimUnG0114600' => 'rsi', 'RhsimUnG0114700' => 'rsi', 'Sabra02G0034800' => 'sbr', 'Sabra02G0035100' => 'sbr', 'Sabra05G0168600' => 'sbr', 'Sabra05G0168800' => 'sbr', 'Sabra08G0123700' => 'sbr', 'Sabra10G0031900' => 'sbr', 'Sabra13G0039000' => 'sbr', 'SalBow2G0782' => 'sbo', 'SalBow2G1403' => 'sbo', 'SalBow4G0074' => 'sbo', 'SalBow4G2635' => 'sbo', 'SalBow5G3010' => 'sbo', 'Sc05g0000870' => 'sci', 'Sc05g0000890' => 'sci', 'Sc13g0005000' => 'sci', 'Sc13g0005030' => 'sci', 'Sc19g0003790' => 'sci', 'Sc19g0003800' => 'sci', 'Sed0003467' => 'sed', 'Sed0009355' => 'sed', 'Sed0009894' => 'sed', 'Sed0011972' => 'sed', 'Sed0021483' => 'sed', 'Sed0021750' => 'sed', 'Sed0026279' => 'sed', 'SEGI_05312' => 'sgi', 'SEGI_10112' => 'sgi', 'SEGI_15835' => 'sgi', 'SEGI_30386' => 'sgi', 'SEGI_34122' => 'sgi', 'SEGI_35063' => 'sgi', 'SGA_v2.0_scaffold101G29794' => 'sas', 'SGA_v2.0_scaffold1G00573' => 'sas', 'SGA_v2.0_scaffold79G25637' => 'sas', 'SGA_v2.0_scaffold88G27283' => 'sas', 'SGA_v2.0_scaffold88G27285' => 'sas', 'SGA_v2.0_scaffold88G27331' => 'sas', 'SHI09937' => 'shi', 'SMO119G0302' => 'smo', 'SMO137G0231' => 'smo', 'SMO367G1151' => 'smo', 'Solyc02g082000.3' => 'sly', 'Solyc06g031670.3' => 'sly', 'Solyc06g053810.3' => 'sly', 'Solyc07g025457.1' => 'sly', 'Solyc08g059740.1' => 'sly', 'Solyc08g059750.3' => 'sly', 'Solyc09g083370.3' => 'sly', 'Solyc12g038950.3' => 'sly', 'Sopen02g026630' => 'spe', 'Sopen06g018930' => 'spe', 'Sopen06g018940' => 'spe', 'Sopen08g009460' => 'spe', 'Sopen09g032290' => 'spe', 'Sp1g03080' => 'spa', 'Sp1g03090' => 'spa', 'Sp1g05480' => 'spa', 'Sp2g07860' => 'spa', 'Sp2g08430' => 'spa', 'Sp2g08440' => 'spa', 'Sp2g26200' => 'spa', 'Sp4g13170' => 'spa', 'Sp6g33840' => 'spa', 'SpUn1204_0010' => 'spa', 'TAR365G0908' => 'tar', 'TAR381G1270' => 'tar', 'TAR381G1651' => 'tar', 'TAR625G1131' => 'tar', 'TAR633G0962' => 'tar', 'TAR633G1729' => 'tar', 'TAR633G1864' => 'tar', 'TAR636G0221' => 'tar', 'TAR636G0314' => 'tar', 'TAR636G3202' => 'tar', 'THA.LOC104800805' => 'tha', 'THA.LOC104801096' => 'tha', 'THA.LOC104801555' => 'tha', 'THA.LOC104808491' => 'tha', 'THA.LOC104808595' => 'tha', 'THA.LOC104815985' => 'tha', 'THA.LOC104822250' => 'tha', 'THA.LOC104826071' => 'tha', 'Thecc.01G265200' => 'tca', 'Thecc.01G265300' => 'tca', 'Thecc.01G265700' => 'tca', 'Thecc.03G109100' => 'tca', 'Thecc.04G245900' => 'tca', 'Thecc.04G246000' => 'tca', 'Thhalv10003334m.g' => 'esa', 'Thhalv10005508m.g' => 'esa', 'Thhalv10005643m.g' => 'esa', 'Thhalv10007316m.g' => 'esa', 'Thhalv10009006m.g' => 'esa', 'Thhalv10009309m.g' => 'esa', 'Thhalv10014917m.g' => 'esa', 'Thhalv10014919m.g' => 'esa', 'Thhalv10015393m.g' => 'esa', 'Thhalv10016515m.g' => 'esa', 'Thhalv10029242m.g' => 'esa', 'TPR.G16654' => 'tpr', 'TPR.G20589' => 'tpr', 'TPR.G23029' => 'tpr', 'TPR.G27731' => 'tpr', 'TPR.G28889' => 'tpr', 'TPR.G28899' => 'tpr', 'TPR.G30846' => 'tpr', 'TPR.G5452' => 'tpr', 'TPR.G5713' => 'tpr', 'TPR.G9046' => 'tpr', 'TPR.G9061' => 'tpr', 'TWI09G1075' => 'twi', 'TWI12G0806' => 'twi', 'TWI18G0108' => 'twi', 'TWI53G1361' => 'twi', 'TWI73G0185' => 'twi', 'TWI73G0427' => 'twi', 'unitig_37.g12001' => 'ugi', 'unitig_747.g21660' => 'ugi', 'unitig_748.g7232' => 'ugi', 'unitig_748.g7315' => 'ugi', 'unitig_85.g27262' => 'ugi', 'unitig_92.g28220' => 'ugi', 'vmacro02632' => 'vma', 'vmacro08410' => 'vma', 'vmacro08411' => 'vma', 'vmacro15407' => 'vma', 'VMungo0251G3619' => 'vmu', 'VMungo0720G1204' => 'vmu', 'VMungo0720G1918' => 'vmu', 'VMungo0720G2387' => 'vmu', 'VMungo0720G2961' => 'vmu', 'VMungo1215G2154' => 'vmu', 'VMungo1383G2411' => 'vmu', 'Zm00001eb051130' => 'zma', 'Zm00001eb116830' => 'zma', 'Zm00001eb116850' => 'zma', 'Zm00001eb151740' => 'zma', 'Zm00001eb292360' => 'zma', 'Zm00001eb301640' => 'zma' ) $gf_id = 'HOM05D000856' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000856' ) $data_identifier = 'HOM05D000856' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 13, 'ath' => (int) 10, 'atr' => (int) 1, 'acertr' => (int) 8, 'cqu' => (int) 6, 'bca' => (int) 21, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 11, 'car' => (int) 9, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 8, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 5, 'fan' => (int) 16, 'fve' => (int) 6, 'gma' => (int) 11, 'ghi' => (int) 19, 'gra' => (int) 9, 'vvi' => (int) 7, 'han' => (int) 17, 'cav' => (int) 5, 'hma' => (int) 2, 'vpl' => (int) 2, 'sun' => (int) 7, 'lal' => (int) 9, 'lja' => (int) 5, 'lonja' => (int) 9, 'lsa' => (int) 5, 'mes' => (int) 8, 'mpo' => (int) 3, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 10, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 15, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 9, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 9, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 6, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 5, 'spa' => (int) 10, 'tar' => (int) 10, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 11, 'tpr' => (int) 11, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 4, 'vmu' => (int) 7, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb301640' $species_info = array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ) $local_species = 'egr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000856', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p00010' => 'bna', 'A03p04160' => 'bna', 'A03p17160' => 'bna', 'A04p23370' => 'bna', 'A05p14860' => 'bna', 'A08p37020' => 'bna', 'A09p08050' => 'bna', 'A09p66800' => 'bna', 'A09p67940' => 'bna', 'A10p02680' => 'bna', 'A10p05320' => 'bna', 'Aa31LG1G20560' => 'aar', 'Aa31LG1G20610' => 'aar', 'Aa31LG1G7810' => 'aar', 'Aa31LG5G3590' => 'aar', 'Aa31LG5G6140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3819' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4683' => 'aag', 'Actinidia04480' => 'ach', 'Actinidia05466' => 'ach', 'Actinidia08445' => 'ach', 'Actinidia21170' => 'ach', 'Actinidia24812' => 'ach', 'Actinidia24951' => 'ach', 'Actinidia40088' => 'ach', 'Ah.02g111660' => 'amhyb', 'Ah.11g048900' => 'amhyb', 'Ah.11g049910' => 'amhyb', 'AL1G13870' => 'aly', 'AL1G13880' => 'aly', 'AL1G16760' => 'aly', 'AL390U10020' => 'aly', 'AL4G25520' => 'aly', 'AL6G19890' => 'aly', 'AL6G19900' => 'aly', 'AL6G19910' => 'aly', 'AL8G40100' => 'aly', 'Aqoxy2G03562' => 'aox', 'Aqoxy5G00316' => 'aox', 'Aqoxy5G00926' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1628KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1H403S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2FU6SJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.882I6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8YRY2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YN1SN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AF70II' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZA8L1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F916KL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHRD8H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KTZ8QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S22EMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8M29T' => 'arhy', 'AT1G04270' => 'ath', 'AT1G04280' => 'ath', 'AT1G06750' => 'ath', 'AT1G33850' => 'ath', 'AT2G30630' => 'ath', 'AT5G09490' => 'ath', 'AT5G09500' => 'ath', 'AT5G09510' => 'ath', 'AT5G43640' => 'ath', 'AT5G63070' => 'ath', 'ATR0605G315' => 'atr', 'Atru.chr11.175' => 'acertr', 'Atru.chr11.653' => 'acertr', 'Atru.chr3.1616' => 'acertr', 'Atru.chr4.2230' => 'acertr', 'Atru.chr4.2232' => 'acertr', 'Atru.chr5.1598' => 'acertr', 'Atru.chr5.1600' => 'acertr', 'Atru.chr5.2188' => 'acertr', 'AUR62008326' => 'cqu', 'AUR62011922' => 'cqu', 'AUR62011924' => 'cqu', 'AUR62021771' => 'cqu', 'AUR62032237' => 'cqu', 'AUR62032240' => 'cqu', 'BcaB01g05572' => 'bca', 'BcaB02g10337' => 'bca', 'BcaB04g19944' => 'bca', 'BcaB05g21548' => 'bca', 'BcaB05g21549' => 'bca', 'BcaB05g23227' => 'bca', 'BcaB06g26256' => 'bca', 'BcaB06g26257' => 'bca', 'BcaB06g28379' => 'bca', 'BcaC02g11159' => 'bca', 'BcaC03g13258' => 'bca', 'BcaC03g13259' => 'bca', 'BcaC05g24456' => 'bca', 'BcaC05g24457' => 'bca', 'BcaC07g36922' => 'bca', 'BcaC07g36923' => 'bca', 'BcaC07g42050' => 'bca', 'BcaC07g42176' => 'bca', 'BcaC07g42195' => 'bca', 'BcaC07g42196' => 'bca', 'BcaNung06674' => 'bca', 'BolC2t06351H' => 'bol', 'BolC2t06352H' => 'bol', 'BolC3t12993H' => 'bol', 'BolC4t23525H' => 'bol', 'BolC4t27475H' => 'bol', 'BolC5t29025H' => 'bol', 'BolC5t29026H' => 'bol', 'BolC8t46898H' => 'bol', 'BolC8t46899H' => 'bol', 'BolC8t52630H' => 'bol', 'BolC8t52765H' => 'bol', 'BolC9t53824H' => 'bol', 'BraA03t09760Z' => 'bra', 'BraA03t10990Z' => 'bra', 'BraA05t20413Z' => 'bra', 'BraA08t35602Z' => 'bra', 'BraA09t36458Z' => 'bra', 'BraA09t42018Z' => 'bra', 'BraA09t42129Z' => 'bra', 'BraA10t42536Z' => 'bra', 'BraA10t42537Z' => 'bra', 'C01p10690' => 'bna', 'C02p03890' => 'bna', 'C02p03900' => 'bna', 'C03p04620' => 'bna', 'C04p19870' => 'bna', 'C04p59670' => 'bna', 'C05p02460' => 'bna', 'C05p02470' => 'bna', 'C08p00980' => 'bna', 'C08p00990' => 'bna', 'C08p51030' => 'bna', 'C08p52360' => 'bna', 'C09p09120' => 'bna', 'CAN.G19.15' => 'can', 'CAN.G251.10' => 'can', 'CAN.G251.9' => 'can', 'CAN.G398.24' => 'can', 'CAN.G410.32' => 'can', 'CAN.G881.2' => 'can', 'CANSAT01G3025' => 'cansat', 'CANSAT78G1211' => 'cansat', 'CANSAT78G1218' => 'cansat', 'CANSAT78G1521' => 'cansat', 'CANSAT78G1670' => 'cansat', 'CARHR003600' => 'chi', 'CARHR003610' => 'chi', 'CARHR006290' => 'chi', 'CARHR006430' => 'chi', 'CARHR124110' => 'chi', 'CARHR203870' => 'chi', 'CARHR203880' => 'chi', 'CARHR203890' => 'chi', 'CARHR276880' => 'chi', 'Carub.0001s0346' => 'cru', 'Carub.0001s0347' => 'cru', 'Carub.0001s0607' => 'cru', 'Carub.0003s2768' => 'cru', 'Carub.0003s2769' => 'cru', 'Carub.0004s1178' => 'cru', 'Carub.0006s0806' => 'cru', 'Carub.0006s0807' => 'cru', 'Carub.0006s0808' => 'cru', 'Carub.0008s0501' => 'cru', 'Carub.0008s2379' => 'cru', 'Ca_08655_v3' => 'car', 'Ca_08922_v3' => 'car', 'Ca_08923_v3' => 'car', 'Ca_09119_v3' => 'car', 'Ca_09703_v3' => 'car', 'Ca_09705_v3' => 'car', 'Ca_09835_v3' => 'car', 'Ca_26403_v3' => 'car', 'Ca_30719_v3' => 'car', 'CBR_g17958' => 'cbr', 'CBR_g40516' => 'cbr', 'Cc00_g05350' => 'ccan', 'Cc01_g18690' => 'ccan', 'Cc03_g04830' => 'ccan', 'Cc03_g04850' => 'ccan', 'CDE02G4469' => 'cde', 'CDE06G0883' => 'cde', 'CDE06G1295' => 'cde', 'CDE06G1390' => 'cde', 'CDE07G0584' => 'cde', 'CDE07G1084' => 'cde', 'CDE08G1259' => 'cde', 'Cfa002341' => 'cfa', 'Cfa024337' => 'cfa', 'Ciclev10004749m.g' => 'ccl', 'Ciclev10006127m.g' => 'ccl', 'Ciclev10019720m.g' => 'ccl', 'Ciclev10022652m.g' => 'ccl', 'CiPaw.01G190400' => 'cil', 'CiPaw.01G190500' => 'cil', 'CiPaw.02G116400' => 'cil', 'CiPaw.02G116500' => 'cil', 'CiPaw.04G183000' => 'cil', 'CiPaw.04G183300' => 'cil', 'ClCG05G004610' => 'cla', 'ClCG05G004620' => 'cla', 'ClCG06G006730' => 'cla', 'ClCG06G006740' => 'cla', 'ClCG11G003690' => 'cla', 'COL.COLO4_08276' => 'col', 'COL.COLO4_08277' => 'col', 'COL.COLO4_15787' => 'col', 'COL.COLO4_15789' => 'col', 'Cpa.g.c44815' => 'cpa', 'Cpa.g.sc52.144' => 'cpa', 'Cpa.g.sc58.46' => 'cpa', 'Cpa.g.sc58.47' => 'cpa', 'Cre08.g360900' => 'cre', 'CsaV3_2G013030' => 'csa', 'CsaV3_2G013050' => 'csa', 'CsaV3_2G015620' => 'csa', 'CsaV3_3G012590' => 'csa', 'CsaV3_3G012600' => 'csa', 'CSS0001641' => 'camsi', 'CSS0008310' => 'camsi', 'CSS0013011' => 'camsi', 'CSS0017147' => 'camsi', 'CSS0022970' => 'camsi', 'CSS0025655' => 'camsi', 'CSS0028665' => 'camsi', 'CSS0029117' => 'camsi', 'CSS0032024' => 'camsi', 'CSS0039681' => 'camsi', 'CSS0046516' => 'camsi', 'CSS0050307' => 'camsi', 'DCAR_005871' => 'dca', 'DCAR_007342' => 'dca', 'DCAR_024228' => 'dca', 'DCAR_027277' => 'dca', 'DCAR_030718' => 'dca', 'Dinv20287' => 'din', 'Dinv22461' => 'din', 'Dinv22464' => 'din', 'Dinv29912' => 'din', 'Dinv29913' => 'din', 'Dinv34580' => 'din', 'Dinv34582' => 'din', 'Dinv44632' => 'din', 'Duzib052G0266' => 'dzi', 'Duzib133G0907' => 'dzi', 'Duzib133G1034' => 'dzi', 'Duzib138G0207' => 'dzi', 'Duzib138G0491' => 'dzi', 'Duzib151G0812' => 'dzi', 'Duzib151G1166' => 'dzi', 'Duzib168G0192' => 'dzi', 'Duzib211G0077' => 'dzi', 'Duzib212G0429' => 'dzi', 'Duzib212G0472' => 'dzi', 'ECA233G2617' => 'eca', 'ECA236G4188' => 'eca', 'ECA240G0936' => 'eca', 'ECA240G1129' => 'eca', 'ECA247G0623' => 'eca', 'EL10Ac5g10451' => 'bvu', 'EL10Ac5g10453' => 'bvu', 'EL10Ac5g10894' => 'bvu', 'Eucgr.H00192' => 'egr', 'Eucgr.H00193' => 'egr', 'Eucgr.H00194' => 'egr', 'Eucgr.J01562' => 'egr', 'Eucgr.K03301' => 'egr', 'FAN02G0632' => 'fan', 'FAN05G5378' => 'fan', 'FAN09G3247' => 'fan', 'FAN12G0435' => 'fan', 'FAN12G2426' => 'fan', 'FAN14G1707' => 'fan', 'FAN14G4725' => 'fan', 'FAN15G2071' => 'fan', 'FAN17G3065' => 'fan', 'FAN19G1376' => 'fan', 'FAN20G0354' => 'fan', 'FAN20G2429' => 'fan', 'FAN20G2658' => 'fan', 'FAN24G2343' => 'fan', 'FAN27G2362' => 'fan', 'FAN28G1765' => 'fan', 'FvH4_1g16020' => 'fve', 'FvH4_2g04890' => 'fve', 'FvH4_2g22270' => 'fve', 'FvH4_4g02630' => 'fve', 'FvH4_4g02640' => 'fve', 'FvH4_6g02650' => 'fve', 'Glyma.02G140600' => 'gma', 'Glyma.03G159900' => 'gma', 'Glyma.05G234800' => 'gma', 'Glyma.07G269600' => 'gma', 'Glyma.08G042300' => 'gma', 'Glyma.10G033500' => 'gma', 'Glyma.10G185200' => 'gma', 'Glyma.17G004300' => 'gma', 'Glyma.19G161900' => 'gma', 'Glyma.20G205100' => 'gma', 'Glyma.20G205200' => 'gma', 'Gohir.A01G139101' => 'ghi', 'Gohir.A02G035600' => 'ghi', 'Gohir.A02G117901' => 'ghi', 'Gohir.A07G210100' => 'ghi', 'Gohir.A07G210200' => 'ghi', 'Gohir.A08G061100' => 'ghi', 'Gohir.A09G223000' => 'ghi', 'Gohir.A09G223100' => 'ghi', 'Gohir.A10G113900' => 'ghi', 'Gohir.A10G114000' => 'ghi', 'Gohir.D02G042300' => 'ghi', 'Gohir.D07G216100' => 'ghi', 'Gohir.D07G216200' => 'ghi', 'Gohir.D08G070400' => 'ghi', 'Gohir.D09G225000' => 'ghi', 'Gohir.D09G225100' => 'ghi', 'Gohir.D10G152300' => 'ghi', 'Gohir.D10G153200' => 'ghi', 'Gohir.D11G133701' => 'ghi', 'Gorai.004G074100' => 'gra', 'Gorai.005G046800' => 'gra', 'Gorai.006G246500' => 'gra', 'Gorai.006G246600' => 'gra', 'Gorai.007G142900' => 'gra', 'Gorai.011G171000' => 'gra', 'Gorai.011G171100' => 'gra', 'Gorai.013G104300' => 'gra', 'Gorai.013G104400' => 'gra', 'GSVIVG01000754001' => 'vvi', 'GSVIVG01000756001' => 'vvi', 'GSVIVG01010903001' => 'vvi', 'GSVIVG01017623001' => 'vvi', 'GSVIVG01018113001' => 'vvi', 'GSVIVG01018116001' => 'vvi', 'GSVIVG01018118001' => 'vvi', 'HanXRQChr03g0076211' => 'han', 'HanXRQChr03g0092431' => 'han', 'HanXRQChr03g0092441' => 'han', 'HanXRQChr03g0092591' => 'han', 'HanXRQChr03g0092671' => 'han', 'HanXRQChr03g0092681' => 'han', 'HanXRQChr03g0092691' => 'han', 'HanXRQChr03g0092701' => 'han', 'HanXRQChr03g0092721' => 'han', 'HanXRQChr03g0092731' => 'han', 'HanXRQChr04g0113681' => 'han', 'HanXRQChr10g0281371' => 'han', 'HanXRQChr11g0337141' => 'han', 'HanXRQChr13g0424521' => 'han', 'HanXRQChr13g0424531' => 'han', 'HanXRQChr13g0424541' => 'han', 'HanXRQChr16g0498221' => 'han', 'Haze_04377' => 'cav', 'Haze_11298' => 'cav', 'Haze_24547' => 'cav', 'Haze_24550' => 'cav', 'Haze_26587' => 'cav', 'Hma1.2p1_0650F.1_g195410' => 'hma', 'Hma1.2p1_0893F.1_g233470' => 'hma', 'HPP92_006508' => 'vpl', 'HPP92_024780' => 'vpl', 'Hund02688' => 'sun', 'Hund09380' => 'sun', 'Hund09381' => 'sun', 'Hund09832' => 'sun', 'Hund09833' => 'sun', 'Hund11351' => 'sun', 'Hund11513' => 'sun', 'Lalb_Chr06g0162591' => 'lal', 'Lalb_Chr06g0162601' => 'lal', 'Lalb_Chr06g0169321' => 'lal', 'Lalb_Chr09g0330951' => 'lal', 'Lalb_Chr16g0387631' => 'lal', 'Lalb_Chr21g0306241' => 'lal', 'Lalb_Chr25g0290051' => 'lal', 'Lalb_Chr25g0290061' => 'lal', 'Lalb_Chr25g0290071' => 'lal', 'Lj1g0003876' => 'lja', 'Lj1P1207T36' => 'lonja', 'Lj2C1156G12' => 'lonja', 'Lj3A793G39' => 'lonja', 'Lj3C580G2' => 'lonja', 'Lj3C780G2' => 'lonja', 'Lj3C780T4' => 'lonja', 'Lj3C793G9' => 'lonja', 'Lj4g0012960' => 'lja', 'Lj5g0021252' => 'lja', 'Lj5g0021484' => 'lja', 'Lj5g0024528' => 'lja', 'Lj6A399T12' => 'lonja', 'Lj6A656G65' => 'lonja', 'Lsat_1_v5_gn_3_125500' => 'lsa', 'Lsat_1_v5_gn_3_125540' => 'lsa', 'Lsat_1_v5_gn_5_72701' => 'lsa', 'Lsat_1_v5_gn_8_91560' => 'lsa', 'Lsat_1_v5_gn_9_9640' => 'lsa', 'Manes.01G200600' => 'mes', 'Manes.01G200700' => 'mes', 'Manes.03G168900' => 'mes', 'Manes.03G169000' => 'mes', 'Manes.05G085801' => 'mes', 'Manes.05G086200' => 'mes', 'Manes.15G036700' => 'mes', 'Manes.15G036900' => 'mes', 'Mapoly0004s0172' => 'mpo', 'Mapoly0023s0001' => 'mpo', 'Mapoly0142s0012' => 'mpo', 'MBI01_g32854_MAGBIO' => 'mbi', 'MBI11_g24427_MAGBIO' => 'mbi', 'MBI11_g47319_MAGBIO' => 'mbi', 'MCO01G433' => 'mco', 'MD00G1187800' => 'mdo', 'MD04G1226500' => 'mdo', 'MD05G1203900' => 'mdo', 'MD10G1191100' => 'mdo', 'MD12G1243500' => 'mdo', 'MD13G1207000' => 'mdo', 'MD13G1207100' => 'mdo', 'MD16G1208600' => 'mdo', 'Medtr1g050352' => 'mtr', 'Medtr1g070385' => 'mtr', 'Medtr1g070450' => 'mtr', 'Medtr1g075200' => 'mtr', 'Medtr1g075250' => 'mtr', 'Medtr1g075260' => 'mtr', 'Medtr1g475250' => 'mtr', 'Medtr4g075450' => 'mtr', 'Medtr7g096300' => 'mtr', 'Medtr8g105110' => 'mtr', 'MELO3C006470.2' => 'cme', 'MELO3C006471.2' => 'cme', 'MELO3C020772.2' => 'cme', 'MELO3C026780.2' => 'cme', 'MELO3C026781.2' => 'cme', 'Migut.D00390' => 'egut', 'Migut.G00435' => 'egut', 'Migut.G00436' => 'egut', 'Migut.G00718' => 'egut', 'MSTRG.21891' => 'ama', 'MSTRG.26910' => 'ama', 'MSTRG.4099' => 'ama', 'MSTRG.9925' => 'ama', 'Nitab4.5_0000165g0010' => 'nta', 'Nitab4.5_0000209g0180' => 'nta', 'Nitab4.5_0000244g0440' => 'nta', 'Nitab4.5_0000525g0220' => 'nta', 'Nitab4.5_0001597g0020' => 'nta', 'Nitab4.5_0001878g0040' => 'nta', 'Nitab4.5_0001878g0060' => 'nta', 'Nitab4.5_0002838g0100' => 'nta', 'Nitab4.5_0002838g0120' => 'nta', 'Nitab4.5_0004798g0030' => 'nta', 'Nitab4.5_0005420g0010' => 'nta', 'Nitab4.5_0005507g0010' => 'nta', 'Nitab4.5_0005574g0020' => 'nta', 'Nitab4.5_0005838g0010' => 'nta', 'Nitab4.5_0010580g0020' => 'nta', 'Nn1g02599' => 'nnu', 'Nn1g02608' => 'nnu', 'Nn3g17742' => 'nnu', 'Nn3g19534' => 'nnu', 'Nn3g19535' => 'nnu', 'Oeu008790.1' => 'oeu', 'Oeu008792.1' => 'oeu', 'Oeu032590.1' => 'oeu', 'Oeu035349.1' => 'oeu', 'Oeu049791.1' => 'oeu', 'Os01g0774500' => 'osa', 'Os03g0628800' => 'osa', 'Os03g0798600' => 'osa', 'Os05g0508800' => 'osa', 'Peaxi162Scf00036g02018' => 'pax', 'Peaxi162Scf00578g00032' => 'pax', 'Peaxi162Scf00578g00317' => 'pax', 'Peaxi162Scf00785g00114' => 'pax', 'Peaxi162Scf00813g00119' => 'pax', 'Peaxi162Scf00906g00227' => 'pax', 'PGR004G0875' => 'pgr', 'PGR004G2424' => 'pgr', 'PGR031G1239' => 'pgr', 'PGR031G2474' => 'pgr', 'PGR044G0423' => 'pgr', 'PGSC0003DMG400001128' => 'stu', 'PGSC0003DMG400007336' => 'stu', 'PGSC0003DMG400016318' => 'stu', 'PGSC0003DMG400016319' => 'stu', 'PGSC0003DMG400018074' => 'stu', 'Phvul.001G157700' => 'pvu', 'Phvul.002G148550' => 'pvu', 'Phvul.002G320200' => 'pvu', 'Phvul.003G089200' => 'pvu', 'Phvul.007G126000' => 'pvu', 'Phvul.007G126100' => 'pvu', 'Phvul.007G178000' => 'pvu', 'Phvul.007G178200' => 'pvu', 'Potri.002G043000' => 'ptr', 'Potri.002G043200' => 'ptr', 'Potri.003G123750' => 'ptr', 'Potri.005G055401' => 'ptr', 'Potri.005G219700' => 'ptr', 'Potri.005G220000' => 'ptr', 'Potri.008G161901' => 'ptr', 'Potri.008G162000' => 'ptr', 'Potri.008G162400' => 'ptr', 'Potri.010G076900' => 'ptr', 'Pp3c12_9180' => 'ppa', 'Pp3c13_19770' => 'ppa', 'Pp3c14_22950' => 'ppa', 'Pp3c16_12160' => 'ppa', 'Pp3c27_7820' => 'ppa', 'Pp3c2_3490' => 'ppa', 'Pp3c3_23700' => 'ppa', 'Pp3c3_36520' => 'ppa', 'Pp3c4_15250' => 'ppa', 'PRCOL_00007002' => 'pco', 'Prupe.1G030600' => 'ppe', 'Prupe.1G030700' => 'ppe', 'Prupe.6G345200' => 'ppe', 'Prupe.8G230300' => 'ppe', 'Prupe.8G230500' => 'ppe', 'Psat3g059600' => 'psa', 'Psat5g200920' => 'psa', 'Psat6g056440' => 'psa', 'Psat6g057360' => 'psa', 'Psat6g134120' => 'psa', 'Psat6g134160' => 'psa', 'Psat7g008640' => 'psa', 'Psat7g185240' => 'psa', 'PSO017G1330' => 'pso', 'PSO063G6097' => 'pso', 'PSO170G0835' => 'pso', 'PSO170G2499' => 'pso', 'PSO210G5058' => 'pso', 'PSO210G6154' => 'pso', 'PSO585G0031' => 'pso', 'PSO832G0264' => 'pso', 'PSO832G4288' => 'pso', 'QL03p027355' => 'qlo', 'QL03p027430' => 'qlo', 'QL04p081380' => 'qlo', 'QL06p015642' => 'qlo', 'QL06p015650' => 'qlo', 'QL06p015686' => 'qlo', 'QL12p042927' => 'qlo', 'QL93p1863_0035' => 'qlo', 'RcHm_v2.0_Chr3g0450581' => 'rch', 'RcHm_v2.0_Chr4g0390371' => 'rch', 'RcHm_v2.0_Chr4g0390381' => 'rch', 'RcHm_v2.0_Chr4g0390491' => 'rch', 'RcHm_v2.0_Chr4g0390501' => 'rch', 'RcHm_v2.0_Chr6g0289231' => 'rch', 'Rhsim04G0190400' => 'rsi', 'Rhsim04G0190500' => 'rsi', 'Rhsim04G0190600' => 'rsi', 'Rhsim13G0031400' => 'rsi', 'Rhsim13G0165600' => 'rsi', 'RhsimUnG0114600' => 'rsi', 'RhsimUnG0114700' => 'rsi', 'Sabra02G0034800' => 'sbr', 'Sabra02G0035100' => 'sbr', 'Sabra05G0168600' => 'sbr', 'Sabra05G0168800' => 'sbr', 'Sabra08G0123700' => 'sbr', 'Sabra10G0031900' => 'sbr', 'Sabra13G0039000' => 'sbr', 'SalBow2G0782' => 'sbo', 'SalBow2G1403' => 'sbo', 'SalBow4G0074' => 'sbo', 'SalBow4G2635' => 'sbo', 'SalBow5G3010' => 'sbo', 'Sc05g0000870' => 'sci', 'Sc05g0000890' => 'sci', 'Sc13g0005000' => 'sci', 'Sc13g0005030' => 'sci', 'Sc19g0003790' => 'sci', 'Sc19g0003800' => 'sci', 'Sed0003467' => 'sed', 'Sed0009355' => 'sed', 'Sed0009894' => 'sed', 'Sed0011972' => 'sed', 'Sed0021483' => 'sed', 'Sed0021750' => 'sed', 'Sed0026279' => 'sed', 'SEGI_05312' => 'sgi', 'SEGI_10112' => 'sgi', 'SEGI_15835' => 'sgi', 'SEGI_30386' => 'sgi', 'SEGI_34122' => 'sgi', 'SEGI_35063' => 'sgi', 'SGA_v2.0_scaffold101G29794' => 'sas', 'SGA_v2.0_scaffold1G00573' => 'sas', 'SGA_v2.0_scaffold79G25637' => 'sas', 'SGA_v2.0_scaffold88G27283' => 'sas', 'SGA_v2.0_scaffold88G27285' => 'sas', 'SGA_v2.0_scaffold88G27331' => 'sas', 'SHI09937' => 'shi', 'SMO119G0302' => 'smo', 'SMO137G0231' => 'smo', 'SMO367G1151' => 'smo', 'Solyc02g082000.3' => 'sly', 'Solyc06g031670.3' => 'sly', 'Solyc06g053810.3' => 'sly', 'Solyc07g025457.1' => 'sly', 'Solyc08g059740.1' => 'sly', 'Solyc08g059750.3' => 'sly', 'Solyc09g083370.3' => 'sly', 'Solyc12g038950.3' => 'sly', 'Sopen02g026630' => 'spe', 'Sopen06g018930' => 'spe', 'Sopen06g018940' => 'spe', 'Sopen08g009460' => 'spe', 'Sopen09g032290' => 'spe', 'Sp1g03080' => 'spa', 'Sp1g03090' => 'spa', 'Sp1g05480' => 'spa', 'Sp2g07860' => 'spa', 'Sp2g08430' => 'spa', 'Sp2g08440' => 'spa', 'Sp2g26200' => 'spa', 'Sp4g13170' => 'spa', 'Sp6g33840' => 'spa', 'SpUn1204_0010' => 'spa', 'TAR365G0908' => 'tar', 'TAR381G1270' => 'tar', 'TAR381G1651' => 'tar', 'TAR625G1131' => 'tar', 'TAR633G0962' => 'tar', 'TAR633G1729' => 'tar', 'TAR633G1864' => 'tar', 'TAR636G0221' => 'tar', 'TAR636G0314' => 'tar', 'TAR636G3202' => 'tar', 'THA.LOC104800805' => 'tha', 'THA.LOC104801096' => 'tha', 'THA.LOC104801555' => 'tha', 'THA.LOC104808491' => 'tha', 'THA.LOC104808595' => 'tha', 'THA.LOC104815985' => 'tha', 'THA.LOC104822250' => 'tha', 'THA.LOC104826071' => 'tha', 'Thecc.01G265200' => 'tca', 'Thecc.01G265300' => 'tca', 'Thecc.01G265700' => 'tca', 'Thecc.03G109100' => 'tca', 'Thecc.04G245900' => 'tca', 'Thecc.04G246000' => 'tca', 'Thhalv10003334m.g' => 'esa', 'Thhalv10005508m.g' => 'esa', 'Thhalv10005643m.g' => 'esa', 'Thhalv10007316m.g' => 'esa', 'Thhalv10009006m.g' => 'esa', 'Thhalv10009309m.g' => 'esa', 'Thhalv10014917m.g' => 'esa', 'Thhalv10014919m.g' => 'esa', 'Thhalv10015393m.g' => 'esa', 'Thhalv10016515m.g' => 'esa', 'Thhalv10029242m.g' => 'esa', 'TPR.G16654' => 'tpr', 'TPR.G20589' => 'tpr', 'TPR.G23029' => 'tpr', 'TPR.G27731' => 'tpr', 'TPR.G28889' => 'tpr', 'TPR.G28899' => 'tpr', 'TPR.G30846' => 'tpr', 'TPR.G5452' => 'tpr', 'TPR.G5713' => 'tpr', 'TPR.G9046' => 'tpr', 'TPR.G9061' => 'tpr', 'TWI09G1075' => 'twi', 'TWI12G0806' => 'twi', 'TWI18G0108' => 'twi', 'TWI53G1361' => 'twi', 'TWI73G0185' => 'twi', 'TWI73G0427' => 'twi', 'unitig_37.g12001' => 'ugi', 'unitig_747.g21660' => 'ugi', 'unitig_748.g7232' => 'ugi', 'unitig_748.g7315' => 'ugi', 'unitig_85.g27262' => 'ugi', 'unitig_92.g28220' => 'ugi', 'vmacro02632' => 'vma', 'vmacro08410' => 'vma', 'vmacro08411' => 'vma', 'vmacro15407' => 'vma', 'VMungo0251G3619' => 'vmu', 'VMungo0720G1204' => 'vmu', 'VMungo0720G1918' => 'vmu', 'VMungo0720G2387' => 'vmu', 'VMungo0720G2961' => 'vmu', 'VMungo1215G2154' => 'vmu', 'VMungo1383G2411' => 'vmu', 'Zm00001eb051130' => 'zma', 'Zm00001eb116830' => 'zma', 'Zm00001eb116850' => 'zma', 'Zm00001eb151740' => 'zma', 'Zm00001eb292360' => 'zma', 'Zm00001eb301640' => 'zma' ), 'gf_id' => 'HOM05D000856', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000856' ), 'data_identifier' => 'HOM05D000856', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000856', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p00010' => 'bna', 'A03p04160' => 'bna', 'A03p17160' => 'bna', 'A04p23370' => 'bna', 'A05p14860' => 'bna', 'A08p37020' => 'bna', 'A09p08050' => 'bna', 'A09p66800' => 'bna', 'A09p67940' => 'bna', 'A10p02680' => 'bna', 'A10p05320' => 'bna', 'Aa31LG1G20560' => 'aar', 'Aa31LG1G20610' => 'aar', 'Aa31LG1G7810' => 'aar', 'Aa31LG5G3590' => 'aar', 'Aa31LG5G6140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3819' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4683' => 'aag', 'Actinidia04480' => 'ach', 'Actinidia05466' => 'ach', 'Actinidia08445' => 'ach', 'Actinidia21170' => 'ach', 'Actinidia24812' => 'ach', 'Actinidia24951' => 'ach', 'Actinidia40088' => 'ach', 'Ah.02g111660' => 'amhyb', 'Ah.11g048900' => 'amhyb', 'Ah.11g049910' => 'amhyb', 'AL1G13870' => 'aly', 'AL1G13880' => 'aly', 'AL1G16760' => 'aly', 'AL390U10020' => 'aly', 'AL4G25520' => 'aly', 'AL6G19890' => 'aly', 'AL6G19900' => 'aly', 'AL6G19910' => 'aly', 'AL8G40100' => 'aly', 'Aqoxy2G03562' => 'aox', 'Aqoxy5G00316' => 'aox', 'Aqoxy5G00926' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1628KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1H403S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2FU6SJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.882I6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8YRY2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YN1SN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AF70II' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZA8L1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F916KL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHRD8H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KTZ8QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S22EMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8M29T' => 'arhy', 'AT1G04270' => 'ath', 'AT1G04280' => 'ath', 'AT1G06750' => 'ath', 'AT1G33850' => 'ath', 'AT2G30630' => 'ath', 'AT5G09490' => 'ath', 'AT5G09500' => 'ath', 'AT5G09510' => 'ath', 'AT5G43640' => 'ath', 'AT5G63070' => 'ath', 'ATR0605G315' => 'atr', 'Atru.chr11.175' => 'acertr', 'Atru.chr11.653' => 'acertr', 'Atru.chr3.1616' => 'acertr', 'Atru.chr4.2230' => 'acertr', 'Atru.chr4.2232' => 'acertr', 'Atru.chr5.1598' => 'acertr', 'Atru.chr5.1600' => 'acertr', 'Atru.chr5.2188' => 'acertr', 'AUR62008326' => 'cqu', 'AUR62011922' => 'cqu', 'AUR62011924' => 'cqu', 'AUR62021771' => 'cqu', 'AUR62032237' => 'cqu', 'AUR62032240' => 'cqu', 'BcaB01g05572' => 'bca', 'BcaB02g10337' => 'bca', 'BcaB04g19944' => 'bca', 'BcaB05g21548' => 'bca', 'BcaB05g21549' => 'bca', 'BcaB05g23227' => 'bca', 'BcaB06g26256' => 'bca', 'BcaB06g26257' => 'bca', 'BcaB06g28379' => 'bca', 'BcaC02g11159' => 'bca', 'BcaC03g13258' => 'bca', 'BcaC03g13259' => 'bca', 'BcaC05g24456' => 'bca', 'BcaC05g24457' => 'bca', 'BcaC07g36922' => 'bca', 'BcaC07g36923' => 'bca', 'BcaC07g42050' => 'bca', 'BcaC07g42176' => 'bca', 'BcaC07g42195' => 'bca', 'BcaC07g42196' => 'bca', 'BcaNung06674' => 'bca', 'BolC2t06351H' => 'bol', 'BolC2t06352H' => 'bol', 'BolC3t12993H' => 'bol', 'BolC4t23525H' => 'bol', 'BolC4t27475H' => 'bol', 'BolC5t29025H' => 'bol', 'BolC5t29026H' => 'bol', 'BolC8t46898H' => 'bol', 'BolC8t46899H' => 'bol', 'BolC8t52630H' => 'bol', 'BolC8t52765H' => 'bol', 'BolC9t53824H' => 'bol', 'BraA03t09760Z' => 'bra', 'BraA03t10990Z' => 'bra', 'BraA05t20413Z' => 'bra', 'BraA08t35602Z' => 'bra', 'BraA09t36458Z' => 'bra', 'BraA09t42018Z' => 'bra', 'BraA09t42129Z' => 'bra', 'BraA10t42536Z' => 'bra', 'BraA10t42537Z' => 'bra', 'C01p10690' => 'bna', 'C02p03890' => 'bna', 'C02p03900' => 'bna', 'C03p04620' => 'bna', 'C04p19870' => 'bna', 'C04p59670' => 'bna', 'C05p02460' => 'bna', 'C05p02470' => 'bna', 'C08p00980' => 'bna', 'C08p00990' => 'bna', 'C08p51030' => 'bna', 'C08p52360' => 'bna', 'C09p09120' => 'bna', 'CAN.G19.15' => 'can', 'CAN.G251.10' => 'can', 'CAN.G251.9' => 'can', 'CAN.G398.24' => 'can', 'CAN.G410.32' => 'can', 'CAN.G881.2' => 'can', 'CANSAT01G3025' => 'cansat', 'CANSAT78G1211' => 'cansat', 'CANSAT78G1218' => 'cansat', 'CANSAT78G1521' => 'cansat', 'CANSAT78G1670' => 'cansat', 'CARHR003600' => 'chi', 'CARHR003610' => 'chi', 'CARHR006290' => 'chi', 'CARHR006430' => 'chi', 'CARHR124110' => 'chi', 'CARHR203870' => 'chi', 'CARHR203880' => 'chi', 'CARHR203890' => 'chi', 'CARHR276880' => 'chi', 'Carub.0001s0346' => 'cru', 'Carub.0001s0347' => 'cru', 'Carub.0001s0607' => 'cru', 'Carub.0003s2768' => 'cru', 'Carub.0003s2769' => 'cru', 'Carub.0004s1178' => 'cru', 'Carub.0006s0806' => 'cru', 'Carub.0006s0807' => 'cru', 'Carub.0006s0808' => 'cru', 'Carub.0008s0501' => 'cru', 'Carub.0008s2379' => 'cru', 'Ca_08655_v3' => 'car', 'Ca_08922_v3' => 'car', 'Ca_08923_v3' => 'car', 'Ca_09119_v3' => 'car', 'Ca_09703_v3' => 'car', 'Ca_09705_v3' => 'car', 'Ca_09835_v3' => 'car', 'Ca_26403_v3' => 'car', 'Ca_30719_v3' => 'car', 'CBR_g17958' => 'cbr', 'CBR_g40516' => 'cbr', 'Cc00_g05350' => 'ccan', 'Cc01_g18690' => 'ccan', 'Cc03_g04830' => 'ccan', 'Cc03_g04850' => 'ccan', 'CDE02G4469' => 'cde', 'CDE06G0883' => 'cde', 'CDE06G1295' => 'cde', 'CDE06G1390' => 'cde', 'CDE07G0584' => 'cde', 'CDE07G1084' => 'cde', 'CDE08G1259' => 'cde', 'Cfa002341' => 'cfa', 'Cfa024337' => 'cfa', 'Ciclev10004749m.g' => 'ccl', 'Ciclev10006127m.g' => 'ccl', 'Ciclev10019720m.g' => 'ccl', 'Ciclev10022652m.g' => 'ccl', 'CiPaw.01G190400' => 'cil', 'CiPaw.01G190500' => 'cil', 'CiPaw.02G116400' => 'cil', 'CiPaw.02G116500' => 'cil', 'CiPaw.04G183000' => 'cil', 'CiPaw.04G183300' => 'cil', 'ClCG05G004610' => 'cla', 'ClCG05G004620' => 'cla', 'ClCG06G006730' => 'cla', 'ClCG06G006740' => 'cla', 'ClCG11G003690' => 'cla', 'COL.COLO4_08276' => 'col', 'COL.COLO4_08277' => 'col', 'COL.COLO4_15787' => 'col', 'COL.COLO4_15789' => 'col', 'Cpa.g.c44815' => 'cpa', 'Cpa.g.sc52.144' => 'cpa', 'Cpa.g.sc58.46' => 'cpa', 'Cpa.g.sc58.47' => 'cpa', 'Cre08.g360900' => 'cre', 'CsaV3_2G013030' => 'csa', 'CsaV3_2G013050' => 'csa', 'CsaV3_2G015620' => 'csa', 'CsaV3_3G012590' => 'csa', 'CsaV3_3G012600' => 'csa', 'CSS0001641' => 'camsi', 'CSS0008310' => 'camsi', 'CSS0013011' => 'camsi', 'CSS0017147' => 'camsi', 'CSS0022970' => 'camsi', 'CSS0025655' => 'camsi', 'CSS0028665' => 'camsi', 'CSS0029117' => 'camsi', 'CSS0032024' => 'camsi', 'CSS0039681' => 'camsi', 'CSS0046516' => 'camsi', 'CSS0050307' => 'camsi', 'DCAR_005871' => 'dca', 'DCAR_007342' => 'dca', 'DCAR_024228' => 'dca', 'DCAR_027277' => 'dca', 'DCAR_030718' => 'dca', 'Dinv20287' => 'din', 'Dinv22461' => 'din', 'Dinv22464' => 'din', 'Dinv29912' => 'din', 'Dinv29913' => 'din', 'Dinv34580' => 'din', 'Dinv34582' => 'din', 'Dinv44632' => 'din', 'Duzib052G0266' => 'dzi', 'Duzib133G0907' => 'dzi', 'Duzib133G1034' => 'dzi', 'Duzib138G0207' => 'dzi', 'Duzib138G0491' => 'dzi', 'Duzib151G0812' => 'dzi', 'Duzib151G1166' => 'dzi', 'Duzib168G0192' => 'dzi', 'Duzib211G0077' => 'dzi', 'Duzib212G0429' => 'dzi', 'Duzib212G0472' => 'dzi', 'ECA233G2617' => 'eca', 'ECA236G4188' => 'eca', 'ECA240G0936' => 'eca', 'ECA240G1129' => 'eca', 'ECA247G0623' => 'eca', 'EL10Ac5g10451' => 'bvu', 'EL10Ac5g10453' => 'bvu', 'EL10Ac5g10894' => 'bvu', 'Eucgr.H00192' => 'egr', 'Eucgr.H00193' => 'egr', 'Eucgr.H00194' => 'egr', 'Eucgr.J01562' => 'egr', 'Eucgr.K03301' => 'egr', 'FAN02G0632' => 'fan', 'FAN05G5378' => 'fan', 'FAN09G3247' => 'fan', 'FAN12G0435' => 'fan', 'FAN12G2426' => 'fan', 'FAN14G1707' => 'fan', 'FAN14G4725' => 'fan', 'FAN15G2071' => 'fan', 'FAN17G3065' => 'fan', 'FAN19G1376' => 'fan', 'FAN20G0354' => 'fan', 'FAN20G2429' => 'fan', 'FAN20G2658' => 'fan', 'FAN24G2343' => 'fan', 'FAN27G2362' => 'fan', 'FAN28G1765' => 'fan', 'FvH4_1g16020' => 'fve', 'FvH4_2g04890' => 'fve', 'FvH4_2g22270' => 'fve', 'FvH4_4g02630' => 'fve', 'FvH4_4g02640' => 'fve', 'FvH4_6g02650' => 'fve', 'Glyma.02G140600' => 'gma', 'Glyma.03G159900' => 'gma', 'Glyma.05G234800' => 'gma', 'Glyma.07G269600' => 'gma', 'Glyma.08G042300' => 'gma', 'Glyma.10G033500' => 'gma', 'Glyma.10G185200' => 'gma', 'Glyma.17G004300' => 'gma', 'Glyma.19G161900' => 'gma', 'Glyma.20G205100' => 'gma', 'Glyma.20G205200' => 'gma', 'Gohir.A01G139101' => 'ghi', 'Gohir.A02G035600' => 'ghi', 'Gohir.A02G117901' => 'ghi', 'Gohir.A07G210100' => 'ghi', 'Gohir.A07G210200' => 'ghi', 'Gohir.A08G061100' => 'ghi', 'Gohir.A09G223000' => 'ghi', 'Gohir.A09G223100' => 'ghi', 'Gohir.A10G113900' => 'ghi', 'Gohir.A10G114000' => 'ghi', 'Gohir.D02G042300' => 'ghi', 'Gohir.D07G216100' => 'ghi', 'Gohir.D07G216200' => 'ghi', 'Gohir.D08G070400' => 'ghi', 'Gohir.D09G225000' => 'ghi', 'Gohir.D09G225100' => 'ghi', 'Gohir.D10G152300' => 'ghi', 'Gohir.D10G153200' => 'ghi', 'Gohir.D11G133701' => 'ghi', 'Gorai.004G074100' => 'gra', 'Gorai.005G046800' => 'gra', 'Gorai.006G246500' => 'gra', 'Gorai.006G246600' => 'gra', 'Gorai.007G142900' => 'gra', 'Gorai.011G171000' => 'gra', 'Gorai.011G171100' => 'gra', 'Gorai.013G104300' => 'gra', 'Gorai.013G104400' => 'gra', 'GSVIVG01000754001' => 'vvi', 'GSVIVG01000756001' => 'vvi', 'GSVIVG01010903001' => 'vvi', 'GSVIVG01017623001' => 'vvi', 'GSVIVG01018113001' => 'vvi', 'GSVIVG01018116001' => 'vvi', 'GSVIVG01018118001' => 'vvi', 'HanXRQChr03g0076211' => 'han', 'HanXRQChr03g0092431' => 'han', 'HanXRQChr03g0092441' => 'han', 'HanXRQChr03g0092591' => 'han', 'HanXRQChr03g0092671' => 'han', 'HanXRQChr03g0092681' => 'han', 'HanXRQChr03g0092691' => 'han', 'HanXRQChr03g0092701' => 'han', 'HanXRQChr03g0092721' => 'han', 'HanXRQChr03g0092731' => 'han', 'HanXRQChr04g0113681' => 'han', 'HanXRQChr10g0281371' => 'han', 'HanXRQChr11g0337141' => 'han', 'HanXRQChr13g0424521' => 'han', 'HanXRQChr13g0424531' => 'han', 'HanXRQChr13g0424541' => 'han', 'HanXRQChr16g0498221' => 'han', 'Haze_04377' => 'cav', 'Haze_11298' => 'cav', 'Haze_24547' => 'cav', 'Haze_24550' => 'cav', 'Haze_26587' => 'cav', 'Hma1.2p1_0650F.1_g195410' => 'hma', 'Hma1.2p1_0893F.1_g233470' => 'hma', 'HPP92_006508' => 'vpl', 'HPP92_024780' => 'vpl', 'Hund02688' => 'sun', 'Hund09380' => 'sun', 'Hund09381' => 'sun', 'Hund09832' => 'sun', 'Hund09833' => 'sun', 'Hund11351' => 'sun', 'Hund11513' => 'sun', 'Lalb_Chr06g0162591' => 'lal', 'Lalb_Chr06g0162601' => 'lal', 'Lalb_Chr06g0169321' => 'lal', 'Lalb_Chr09g0330951' => 'lal', 'Lalb_Chr16g0387631' => 'lal', 'Lalb_Chr21g0306241' => 'lal', 'Lalb_Chr25g0290051' => 'lal', 'Lalb_Chr25g0290061' => 'lal', 'Lalb_Chr25g0290071' => 'lal', 'Lj1g0003876' => 'lja', 'Lj1P1207T36' => 'lonja', 'Lj2C1156G12' => 'lonja', 'Lj3A793G39' => 'lonja', 'Lj3C580G2' => 'lonja', 'Lj3C780G2' => 'lonja', 'Lj3C780T4' => 'lonja', 'Lj3C793G9' => 'lonja', 'Lj4g0012960' => 'lja', 'Lj5g0021252' => 'lja', 'Lj5g0021484' => 'lja', 'Lj5g0024528' => 'lja', 'Lj6A399T12' => 'lonja', 'Lj6A656G65' => 'lonja', 'Lsat_1_v5_gn_3_125500' => 'lsa', 'Lsat_1_v5_gn_3_125540' => 'lsa', 'Lsat_1_v5_gn_5_72701' => 'lsa', 'Lsat_1_v5_gn_8_91560' => 'lsa', 'Lsat_1_v5_gn_9_9640' => 'lsa', 'Manes.01G200600' => 'mes', 'Manes.01G200700' => 'mes', 'Manes.03G168900' => 'mes', 'Manes.03G169000' => 'mes', 'Manes.05G085801' => 'mes', 'Manes.05G086200' => 'mes', 'Manes.15G036700' => 'mes', 'Manes.15G036900' => 'mes', 'Mapoly0004s0172' => 'mpo', 'Mapoly0023s0001' => 'mpo', 'Mapoly0142s0012' => 'mpo', 'MBI01_g32854_MAGBIO' => 'mbi', 'MBI11_g24427_MAGBIO' => 'mbi', 'MBI11_g47319_MAGBIO' => 'mbi', 'MCO01G433' => 'mco', 'MD00G1187800' => 'mdo', 'MD04G1226500' => 'mdo', 'MD05G1203900' => 'mdo', 'MD10G1191100' => 'mdo', 'MD12G1243500' => 'mdo', 'MD13G1207000' => 'mdo', 'MD13G1207100' => 'mdo', 'MD16G1208600' => 'mdo', 'Medtr1g050352' => 'mtr', 'Medtr1g070385' => 'mtr', 'Medtr1g070450' => 'mtr', 'Medtr1g075200' => 'mtr', 'Medtr1g075250' => 'mtr', 'Medtr1g075260' => 'mtr', 'Medtr1g475250' => 'mtr', 'Medtr4g075450' => 'mtr', 'Medtr7g096300' => 'mtr', 'Medtr8g105110' => 'mtr', 'MELO3C006470.2' => 'cme', 'MELO3C006471.2' => 'cme', 'MELO3C020772.2' => 'cme', 'MELO3C026780.2' => 'cme', 'MELO3C026781.2' => 'cme', 'Migut.D00390' => 'egut', 'Migut.G00435' => 'egut', 'Migut.G00436' => 'egut', 'Migut.G00718' => 'egut', 'MSTRG.21891' => 'ama', 'MSTRG.26910' => 'ama', 'MSTRG.4099' => 'ama', 'MSTRG.9925' => 'ama', 'Nitab4.5_0000165g0010' => 'nta', 'Nitab4.5_0000209g0180' => 'nta', 'Nitab4.5_0000244g0440' => 'nta', 'Nitab4.5_0000525g0220' => 'nta', 'Nitab4.5_0001597g0020' => 'nta', 'Nitab4.5_0001878g0040' => 'nta', 'Nitab4.5_0001878g0060' => 'nta', 'Nitab4.5_0002838g0100' => 'nta', 'Nitab4.5_0002838g0120' => 'nta', 'Nitab4.5_0004798g0030' => 'nta', 'Nitab4.5_0005420g0010' => 'nta', 'Nitab4.5_0005507g0010' => 'nta', 'Nitab4.5_0005574g0020' => 'nta', 'Nitab4.5_0005838g0010' => 'nta', 'Nitab4.5_0010580g0020' => 'nta', 'Nn1g02599' => 'nnu', 'Nn1g02608' => 'nnu', 'Nn3g17742' => 'nnu', 'Nn3g19534' => 'nnu', 'Nn3g19535' => 'nnu', 'Oeu008790.1' => 'oeu', 'Oeu008792.1' => 'oeu', 'Oeu032590.1' => 'oeu', 'Oeu035349.1' => 'oeu', 'Oeu049791.1' => 'oeu', 'Os01g0774500' => 'osa', 'Os03g0628800' => 'osa', 'Os03g0798600' => 'osa', 'Os05g0508800' => 'osa', 'Peaxi162Scf00036g02018' => 'pax', 'Peaxi162Scf00578g00032' => 'pax', 'Peaxi162Scf00578g00317' => 'pax', 'Peaxi162Scf00785g00114' => 'pax', 'Peaxi162Scf00813g00119' => 'pax', 'Peaxi162Scf00906g00227' => 'pax', 'PGR004G0875' => 'pgr', 'PGR004G2424' => 'pgr', 'PGR031G1239' => 'pgr', 'PGR031G2474' => 'pgr', 'PGR044G0423' => 'pgr', 'PGSC0003DMG400001128' => 'stu', 'PGSC0003DMG400007336' => 'stu', 'PGSC0003DMG400016318' => 'stu', 'PGSC0003DMG400016319' => 'stu', 'PGSC0003DMG400018074' => 'stu', 'Phvul.001G157700' => 'pvu', 'Phvul.002G148550' => 'pvu', 'Phvul.002G320200' => 'pvu', 'Phvul.003G089200' => 'pvu', 'Phvul.007G126000' => 'pvu', 'Phvul.007G126100' => 'pvu', 'Phvul.007G178000' => 'pvu', 'Phvul.007G178200' => 'pvu', 'Potri.002G043000' => 'ptr', 'Potri.002G043200' => 'ptr', 'Potri.003G123750' => 'ptr', 'Potri.005G055401' => 'ptr', 'Potri.005G219700' => 'ptr', 'Potri.005G220000' => 'ptr', 'Potri.008G161901' => 'ptr', 'Potri.008G162000' => 'ptr', 'Potri.008G162400' => 'ptr', 'Potri.010G076900' => 'ptr', 'Pp3c12_9180' => 'ppa', 'Pp3c13_19770' => 'ppa', 'Pp3c14_22950' => 'ppa', 'Pp3c16_12160' => 'ppa', 'Pp3c27_7820' => 'ppa', 'Pp3c2_3490' => 'ppa', 'Pp3c3_23700' => 'ppa', 'Pp3c3_36520' => 'ppa', 'Pp3c4_15250' => 'ppa', 'PRCOL_00007002' => 'pco', 'Prupe.1G030600' => 'ppe', 'Prupe.1G030700' => 'ppe', 'Prupe.6G345200' => 'ppe', 'Prupe.8G230300' => 'ppe', 'Prupe.8G230500' => 'ppe', 'Psat3g059600' => 'psa', 'Psat5g200920' => 'psa', 'Psat6g056440' => 'psa', 'Psat6g057360' => 'psa', 'Psat6g134120' => 'psa', 'Psat6g134160' => 'psa', 'Psat7g008640' => 'psa', 'Psat7g185240' => 'psa', 'PSO017G1330' => 'pso', 'PSO063G6097' => 'pso', 'PSO170G0835' => 'pso', 'PSO170G2499' => 'pso', 'PSO210G5058' => 'pso', 'PSO210G6154' => 'pso', 'PSO585G0031' => 'pso', 'PSO832G0264' => 'pso', 'PSO832G4288' => 'pso', 'QL03p027355' => 'qlo', 'QL03p027430' => 'qlo', 'QL04p081380' => 'qlo', 'QL06p015642' => 'qlo', 'QL06p015650' => 'qlo', 'QL06p015686' => 'qlo', 'QL12p042927' => 'qlo', 'QL93p1863_0035' => 'qlo', 'RcHm_v2.0_Chr3g0450581' => 'rch', 'RcHm_v2.0_Chr4g0390371' => 'rch', 'RcHm_v2.0_Chr4g0390381' => 'rch', 'RcHm_v2.0_Chr4g0390491' => 'rch', 'RcHm_v2.0_Chr4g0390501' => 'rch', 'RcHm_v2.0_Chr6g0289231' => 'rch', 'Rhsim04G0190400' => 'rsi', 'Rhsim04G0190500' => 'rsi', 'Rhsim04G0190600' => 'rsi', 'Rhsim13G0031400' => 'rsi', 'Rhsim13G0165600' => 'rsi', 'RhsimUnG0114600' => 'rsi', 'RhsimUnG0114700' => 'rsi', 'Sabra02G0034800' => 'sbr', 'Sabra02G0035100' => 'sbr', 'Sabra05G0168600' => 'sbr', 'Sabra05G0168800' => 'sbr', 'Sabra08G0123700' => 'sbr', 'Sabra10G0031900' => 'sbr', 'Sabra13G0039000' => 'sbr', 'SalBow2G0782' => 'sbo', 'SalBow2G1403' => 'sbo', 'SalBow4G0074' => 'sbo', 'SalBow4G2635' => 'sbo', 'SalBow5G3010' => 'sbo', 'Sc05g0000870' => 'sci', 'Sc05g0000890' => 'sci', 'Sc13g0005000' => 'sci', 'Sc13g0005030' => 'sci', 'Sc19g0003790' => 'sci', 'Sc19g0003800' => 'sci', 'Sed0003467' => 'sed', 'Sed0009355' => 'sed', 'Sed0009894' => 'sed', 'Sed0011972' => 'sed', 'Sed0021483' => 'sed', 'Sed0021750' => 'sed', 'Sed0026279' => 'sed', 'SEGI_05312' => 'sgi', 'SEGI_10112' => 'sgi', 'SEGI_15835' => 'sgi', 'SEGI_30386' => 'sgi', 'SEGI_34122' => 'sgi', 'SEGI_35063' => 'sgi', 'SGA_v2.0_scaffold101G29794' => 'sas', 'SGA_v2.0_scaffold1G00573' => 'sas', 'SGA_v2.0_scaffold79G25637' => 'sas', 'SGA_v2.0_scaffold88G27283' => 'sas', 'SGA_v2.0_scaffold88G27285' => 'sas', 'SGA_v2.0_scaffold88G27331' => 'sas', 'SHI09937' => 'shi', 'SMO119G0302' => 'smo', 'SMO137G0231' => 'smo', 'SMO367G1151' => 'smo', 'Solyc02g082000.3' => 'sly', 'Solyc06g031670.3' => 'sly', 'Solyc06g053810.3' => 'sly', 'Solyc07g025457.1' => 'sly', 'Solyc08g059740.1' => 'sly', 'Solyc08g059750.3' => 'sly', 'Solyc09g083370.3' => 'sly', 'Solyc12g038950.3' => 'sly', 'Sopen02g026630' => 'spe', 'Sopen06g018930' => 'spe', 'Sopen06g018940' => 'spe', 'Sopen08g009460' => 'spe', 'Sopen09g032290' => 'spe', 'Sp1g03080' => 'spa', 'Sp1g03090' => 'spa', 'Sp1g05480' => 'spa', 'Sp2g07860' => 'spa', 'Sp2g08430' => 'spa', 'Sp2g08440' => 'spa', 'Sp2g26200' => 'spa', 'Sp4g13170' => 'spa', 'Sp6g33840' => 'spa', 'SpUn1204_0010' => 'spa', 'TAR365G0908' => 'tar', 'TAR381G1270' => 'tar', 'TAR381G1651' => 'tar', 'TAR625G1131' => 'tar', 'TAR633G0962' => 'tar', 'TAR633G1729' => 'tar', 'TAR633G1864' => 'tar', 'TAR636G0221' => 'tar', 'TAR636G0314' => 'tar', 'TAR636G3202' => 'tar', 'THA.LOC104800805' => 'tha', 'THA.LOC104801096' => 'tha', 'THA.LOC104801555' => 'tha', 'THA.LOC104808491' => 'tha', 'THA.LOC104808595' => 'tha', 'THA.LOC104815985' => 'tha', 'THA.LOC104822250' => 'tha', 'THA.LOC104826071' => 'tha', 'Thecc.01G265200' => 'tca', 'Thecc.01G265300' => 'tca', 'Thecc.01G265700' => 'tca', 'Thecc.03G109100' => 'tca', 'Thecc.04G245900' => 'tca', 'Thecc.04G246000' => 'tca', 'Thhalv10003334m.g' => 'esa', 'Thhalv10005508m.g' => 'esa', 'Thhalv10005643m.g' => 'esa', 'Thhalv10007316m.g' => 'esa', 'Thhalv10009006m.g' => 'esa', 'Thhalv10009309m.g' => 'esa', 'Thhalv10014917m.g' => 'esa', 'Thhalv10014919m.g' => 'esa', 'Thhalv10015393m.g' => 'esa', 'Thhalv10016515m.g' => 'esa', 'Thhalv10029242m.g' => 'esa', 'TPR.G16654' => 'tpr', 'TPR.G20589' => 'tpr', 'TPR.G23029' => 'tpr', 'TPR.G27731' => 'tpr', 'TPR.G28889' => 'tpr', 'TPR.G28899' => 'tpr', 'TPR.G30846' => 'tpr', 'TPR.G5452' => 'tpr', 'TPR.G5713' => 'tpr', 'TPR.G9046' => 'tpr', 'TPR.G9061' => 'tpr', 'TWI09G1075' => 'twi', 'TWI12G0806' => 'twi', 'TWI18G0108' => 'twi', 'TWI53G1361' => 'twi', 'TWI73G0185' => 'twi', 'TWI73G0427' => 'twi', 'unitig_37.g12001' => 'ugi', 'unitig_747.g21660' => 'ugi', 'unitig_748.g7232' => 'ugi', 'unitig_748.g7315' => 'ugi', 'unitig_85.g27262' => 'ugi', 'unitig_92.g28220' => 'ugi', 'vmacro02632' => 'vma', 'vmacro08410' => 'vma', 'vmacro08411' => 'vma', 'vmacro15407' => 'vma', 'VMungo0251G3619' => 'vmu', 'VMungo0720G1204' => 'vmu', 'VMungo0720G1918' => 'vmu', 'VMungo0720G2387' => 'vmu', 'VMungo0720G2961' => 'vmu', 'VMungo1215G2154' => 'vmu', 'VMungo1383G2411' => 'vmu', 'Zm00001eb051130' => 'zma', 'Zm00001eb116830' => 'zma', 'Zm00001eb116850' => 'zma', 'Zm00001eb151740' => 'zma', 'Zm00001eb292360' => 'zma', 'Zm00001eb301640' => 'zma' ) $gf_id = 'HOM05D000856' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000856' ) $data_identifier = 'HOM05D000856' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 13, 'ath' => (int) 10, 'atr' => (int) 1, 'acertr' => (int) 8, 'cqu' => (int) 6, 'bca' => (int) 21, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 11, 'car' => (int) 9, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 8, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 5, 'fan' => (int) 16, 'fve' => (int) 6, 'gma' => (int) 11, 'ghi' => (int) 19, 'gra' => (int) 9, 'vvi' => (int) 7, 'han' => (int) 17, 'cav' => (int) 5, 'hma' => (int) 2, 'vpl' => (int) 2, 'sun' => (int) 7, 'lal' => (int) 9, 'lja' => (int) 5, 'lonja' => (int) 9, 'lsa' => (int) 5, 'mes' => (int) 8, 'mpo' => (int) 3, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 10, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 15, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 9, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 9, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 6, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 5, 'spa' => (int) 10, 'tar' => (int) 10, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 11, 'tpr' => (int) 11, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 4, 'vmu' => (int) 7, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb301640' $species_info = array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ) $local_species = 'egr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000856', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p00010' => 'bna', 'A03p04160' => 'bna', 'A03p17160' => 'bna', 'A04p23370' => 'bna', 'A05p14860' => 'bna', 'A08p37020' => 'bna', 'A09p08050' => 'bna', 'A09p66800' => 'bna', 'A09p67940' => 'bna', 'A10p02680' => 'bna', 'A10p05320' => 'bna', 'Aa31LG1G20560' => 'aar', 'Aa31LG1G20610' => 'aar', 'Aa31LG1G7810' => 'aar', 'Aa31LG5G3590' => 'aar', 'Aa31LG5G6140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3819' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4683' => 'aag', 'Actinidia04480' => 'ach', 'Actinidia05466' => 'ach', 'Actinidia08445' => 'ach', 'Actinidia21170' => 'ach', 'Actinidia24812' => 'ach', 'Actinidia24951' => 'ach', 'Actinidia40088' => 'ach', 'Ah.02g111660' => 'amhyb', 'Ah.11g048900' => 'amhyb', 'Ah.11g049910' => 'amhyb', 'AL1G13870' => 'aly', 'AL1G13880' => 'aly', 'AL1G16760' => 'aly', 'AL390U10020' => 'aly', 'AL4G25520' => 'aly', 'AL6G19890' => 'aly', 'AL6G19900' => 'aly', 'AL6G19910' => 'aly', 'AL8G40100' => 'aly', 'Aqoxy2G03562' => 'aox', 'Aqoxy5G00316' => 'aox', 'Aqoxy5G00926' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1628KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1H403S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2FU6SJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.882I6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8YRY2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YN1SN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AF70II' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZA8L1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F916KL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHRD8H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KTZ8QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S22EMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8M29T' => 'arhy', 'AT1G04270' => 'ath', 'AT1G04280' => 'ath', 'AT1G06750' => 'ath', 'AT1G33850' => 'ath', 'AT2G30630' => 'ath', 'AT5G09490' => 'ath', 'AT5G09500' => 'ath', 'AT5G09510' => 'ath', 'AT5G43640' => 'ath', 'AT5G63070' => 'ath', 'ATR0605G315' => 'atr', 'Atru.chr11.175' => 'acertr', 'Atru.chr11.653' => 'acertr', 'Atru.chr3.1616' => 'acertr', 'Atru.chr4.2230' => 'acertr', 'Atru.chr4.2232' => 'acertr', 'Atru.chr5.1598' => 'acertr', 'Atru.chr5.1600' => 'acertr', 'Atru.chr5.2188' => 'acertr', 'AUR62008326' => 'cqu', 'AUR62011922' => 'cqu', 'AUR62011924' => 'cqu', 'AUR62021771' => 'cqu', 'AUR62032237' => 'cqu', 'AUR62032240' => 'cqu', 'BcaB01g05572' => 'bca', 'BcaB02g10337' => 'bca', 'BcaB04g19944' => 'bca', 'BcaB05g21548' => 'bca', 'BcaB05g21549' => 'bca', 'BcaB05g23227' => 'bca', 'BcaB06g26256' => 'bca', 'BcaB06g26257' => 'bca', 'BcaB06g28379' => 'bca', 'BcaC02g11159' => 'bca', 'BcaC03g13258' => 'bca', 'BcaC03g13259' => 'bca', 'BcaC05g24456' => 'bca', 'BcaC05g24457' => 'bca', 'BcaC07g36922' => 'bca', 'BcaC07g36923' => 'bca', 'BcaC07g42050' => 'bca', 'BcaC07g42176' => 'bca', 'BcaC07g42195' => 'bca', 'BcaC07g42196' => 'bca', 'BcaNung06674' => 'bca', 'BolC2t06351H' => 'bol', 'BolC2t06352H' => 'bol', 'BolC3t12993H' => 'bol', 'BolC4t23525H' => 'bol', 'BolC4t27475H' => 'bol', 'BolC5t29025H' => 'bol', 'BolC5t29026H' => 'bol', 'BolC8t46898H' => 'bol', 'BolC8t46899H' => 'bol', 'BolC8t52630H' => 'bol', 'BolC8t52765H' => 'bol', 'BolC9t53824H' => 'bol', 'BraA03t09760Z' => 'bra', 'BraA03t10990Z' => 'bra', 'BraA05t20413Z' => 'bra', 'BraA08t35602Z' => 'bra', 'BraA09t36458Z' => 'bra', 'BraA09t42018Z' => 'bra', 'BraA09t42129Z' => 'bra', 'BraA10t42536Z' => 'bra', 'BraA10t42537Z' => 'bra', 'C01p10690' => 'bna', 'C02p03890' => 'bna', 'C02p03900' => 'bna', 'C03p04620' => 'bna', 'C04p19870' => 'bna', 'C04p59670' => 'bna', 'C05p02460' => 'bna', 'C05p02470' => 'bna', 'C08p00980' => 'bna', 'C08p00990' => 'bna', 'C08p51030' => 'bna', 'C08p52360' => 'bna', 'C09p09120' => 'bna', 'CAN.G19.15' => 'can', 'CAN.G251.10' => 'can', 'CAN.G251.9' => 'can', 'CAN.G398.24' => 'can', 'CAN.G410.32' => 'can', 'CAN.G881.2' => 'can', 'CANSAT01G3025' => 'cansat', 'CANSAT78G1211' => 'cansat', 'CANSAT78G1218' => 'cansat', 'CANSAT78G1521' => 'cansat', 'CANSAT78G1670' => 'cansat', 'CARHR003600' => 'chi', 'CARHR003610' => 'chi', 'CARHR006290' => 'chi', 'CARHR006430' => 'chi', 'CARHR124110' => 'chi', 'CARHR203870' => 'chi', 'CARHR203880' => 'chi', 'CARHR203890' => 'chi', 'CARHR276880' => 'chi', 'Carub.0001s0346' => 'cru', 'Carub.0001s0347' => 'cru', 'Carub.0001s0607' => 'cru', 'Carub.0003s2768' => 'cru', 'Carub.0003s2769' => 'cru', 'Carub.0004s1178' => 'cru', 'Carub.0006s0806' => 'cru', 'Carub.0006s0807' => 'cru', 'Carub.0006s0808' => 'cru', 'Carub.0008s0501' => 'cru', 'Carub.0008s2379' => 'cru', 'Ca_08655_v3' => 'car', 'Ca_08922_v3' => 'car', 'Ca_08923_v3' => 'car', 'Ca_09119_v3' => 'car', 'Ca_09703_v3' => 'car', 'Ca_09705_v3' => 'car', 'Ca_09835_v3' => 'car', 'Ca_26403_v3' => 'car', 'Ca_30719_v3' => 'car', 'CBR_g17958' => 'cbr', 'CBR_g40516' => 'cbr', 'Cc00_g05350' => 'ccan', 'Cc01_g18690' => 'ccan', 'Cc03_g04830' => 'ccan', 'Cc03_g04850' => 'ccan', 'CDE02G4469' => 'cde', 'CDE06G0883' => 'cde', 'CDE06G1295' => 'cde', 'CDE06G1390' => 'cde', 'CDE07G0584' => 'cde', 'CDE07G1084' => 'cde', 'CDE08G1259' => 'cde', 'Cfa002341' => 'cfa', 'Cfa024337' => 'cfa', 'Ciclev10004749m.g' => 'ccl', 'Ciclev10006127m.g' => 'ccl', 'Ciclev10019720m.g' => 'ccl', 'Ciclev10022652m.g' => 'ccl', 'CiPaw.01G190400' => 'cil', 'CiPaw.01G190500' => 'cil', 'CiPaw.02G116400' => 'cil', 'CiPaw.02G116500' => 'cil', 'CiPaw.04G183000' => 'cil', 'CiPaw.04G183300' => 'cil', 'ClCG05G004610' => 'cla', 'ClCG05G004620' => 'cla', 'ClCG06G006730' => 'cla', 'ClCG06G006740' => 'cla', 'ClCG11G003690' => 'cla', 'COL.COLO4_08276' => 'col', 'COL.COLO4_08277' => 'col', 'COL.COLO4_15787' => 'col', 'COL.COLO4_15789' => 'col', 'Cpa.g.c44815' => 'cpa', 'Cpa.g.sc52.144' => 'cpa', 'Cpa.g.sc58.46' => 'cpa', 'Cpa.g.sc58.47' => 'cpa', 'Cre08.g360900' => 'cre', 'CsaV3_2G013030' => 'csa', 'CsaV3_2G013050' => 'csa', 'CsaV3_2G015620' => 'csa', 'CsaV3_3G012590' => 'csa', 'CsaV3_3G012600' => 'csa', 'CSS0001641' => 'camsi', 'CSS0008310' => 'camsi', 'CSS0013011' => 'camsi', 'CSS0017147' => 'camsi', 'CSS0022970' => 'camsi', 'CSS0025655' => 'camsi', 'CSS0028665' => 'camsi', 'CSS0029117' => 'camsi', 'CSS0032024' => 'camsi', 'CSS0039681' => 'camsi', 'CSS0046516' => 'camsi', 'CSS0050307' => 'camsi', 'DCAR_005871' => 'dca', 'DCAR_007342' => 'dca', 'DCAR_024228' => 'dca', 'DCAR_027277' => 'dca', 'DCAR_030718' => 'dca', 'Dinv20287' => 'din', 'Dinv22461' => 'din', 'Dinv22464' => 'din', 'Dinv29912' => 'din', 'Dinv29913' => 'din', 'Dinv34580' => 'din', 'Dinv34582' => 'din', 'Dinv44632' => 'din', 'Duzib052G0266' => 'dzi', 'Duzib133G0907' => 'dzi', 'Duzib133G1034' => 'dzi', 'Duzib138G0207' => 'dzi', 'Duzib138G0491' => 'dzi', 'Duzib151G0812' => 'dzi', 'Duzib151G1166' => 'dzi', 'Duzib168G0192' => 'dzi', 'Duzib211G0077' => 'dzi', 'Duzib212G0429' => 'dzi', 'Duzib212G0472' => 'dzi', 'ECA233G2617' => 'eca', 'ECA236G4188' => 'eca', 'ECA240G0936' => 'eca', 'ECA240G1129' => 'eca', 'ECA247G0623' => 'eca', 'EL10Ac5g10451' => 'bvu', 'EL10Ac5g10453' => 'bvu', 'EL10Ac5g10894' => 'bvu', 'Eucgr.H00192' => 'egr', 'Eucgr.H00193' => 'egr', 'Eucgr.H00194' => 'egr', 'Eucgr.J01562' => 'egr', 'Eucgr.K03301' => 'egr', 'FAN02G0632' => 'fan', 'FAN05G5378' => 'fan', 'FAN09G3247' => 'fan', 'FAN12G0435' => 'fan', 'FAN12G2426' => 'fan', 'FAN14G1707' => 'fan', 'FAN14G4725' => 'fan', 'FAN15G2071' => 'fan', 'FAN17G3065' => 'fan', 'FAN19G1376' => 'fan', 'FAN20G0354' => 'fan', 'FAN20G2429' => 'fan', 'FAN20G2658' => 'fan', 'FAN24G2343' => 'fan', 'FAN27G2362' => 'fan', 'FAN28G1765' => 'fan', 'FvH4_1g16020' => 'fve', 'FvH4_2g04890' => 'fve', 'FvH4_2g22270' => 'fve', 'FvH4_4g02630' => 'fve', 'FvH4_4g02640' => 'fve', 'FvH4_6g02650' => 'fve', 'Glyma.02G140600' => 'gma', 'Glyma.03G159900' => 'gma', 'Glyma.05G234800' => 'gma', 'Glyma.07G269600' => 'gma', 'Glyma.08G042300' => 'gma', 'Glyma.10G033500' => 'gma', 'Glyma.10G185200' => 'gma', 'Glyma.17G004300' => 'gma', 'Glyma.19G161900' => 'gma', 'Glyma.20G205100' => 'gma', 'Glyma.20G205200' => 'gma', 'Gohir.A01G139101' => 'ghi', 'Gohir.A02G035600' => 'ghi', 'Gohir.A02G117901' => 'ghi', 'Gohir.A07G210100' => 'ghi', 'Gohir.A07G210200' => 'ghi', 'Gohir.A08G061100' => 'ghi', 'Gohir.A09G223000' => 'ghi', 'Gohir.A09G223100' => 'ghi', 'Gohir.A10G113900' => 'ghi', 'Gohir.A10G114000' => 'ghi', 'Gohir.D02G042300' => 'ghi', 'Gohir.D07G216100' => 'ghi', 'Gohir.D07G216200' => 'ghi', 'Gohir.D08G070400' => 'ghi', 'Gohir.D09G225000' => 'ghi', 'Gohir.D09G225100' => 'ghi', 'Gohir.D10G152300' => 'ghi', 'Gohir.D10G153200' => 'ghi', 'Gohir.D11G133701' => 'ghi', 'Gorai.004G074100' => 'gra', 'Gorai.005G046800' => 'gra', 'Gorai.006G246500' => 'gra', 'Gorai.006G246600' => 'gra', 'Gorai.007G142900' => 'gra', 'Gorai.011G171000' => 'gra', 'Gorai.011G171100' => 'gra', 'Gorai.013G104300' => 'gra', 'Gorai.013G104400' => 'gra', 'GSVIVG01000754001' => 'vvi', 'GSVIVG01000756001' => 'vvi', 'GSVIVG01010903001' => 'vvi', 'GSVIVG01017623001' => 'vvi', 'GSVIVG01018113001' => 'vvi', 'GSVIVG01018116001' => 'vvi', 'GSVIVG01018118001' => 'vvi', 'HanXRQChr03g0076211' => 'han', 'HanXRQChr03g0092431' => 'han', 'HanXRQChr03g0092441' => 'han', 'HanXRQChr03g0092591' => 'han', 'HanXRQChr03g0092671' => 'han', 'HanXRQChr03g0092681' => 'han', 'HanXRQChr03g0092691' => 'han', 'HanXRQChr03g0092701' => 'han', 'HanXRQChr03g0092721' => 'han', 'HanXRQChr03g0092731' => 'han', 'HanXRQChr04g0113681' => 'han', 'HanXRQChr10g0281371' => 'han', 'HanXRQChr11g0337141' => 'han', 'HanXRQChr13g0424521' => 'han', 'HanXRQChr13g0424531' => 'han', 'HanXRQChr13g0424541' => 'han', 'HanXRQChr16g0498221' => 'han', 'Haze_04377' => 'cav', 'Haze_11298' => 'cav', 'Haze_24547' => 'cav', 'Haze_24550' => 'cav', 'Haze_26587' => 'cav', 'Hma1.2p1_0650F.1_g195410' => 'hma', 'Hma1.2p1_0893F.1_g233470' => 'hma', 'HPP92_006508' => 'vpl', 'HPP92_024780' => 'vpl', 'Hund02688' => 'sun', 'Hund09380' => 'sun', 'Hund09381' => 'sun', 'Hund09832' => 'sun', 'Hund09833' => 'sun', 'Hund11351' => 'sun', 'Hund11513' => 'sun', 'Lalb_Chr06g0162591' => 'lal', 'Lalb_Chr06g0162601' => 'lal', 'Lalb_Chr06g0169321' => 'lal', 'Lalb_Chr09g0330951' => 'lal', 'Lalb_Chr16g0387631' => 'lal', 'Lalb_Chr21g0306241' => 'lal', 'Lalb_Chr25g0290051' => 'lal', 'Lalb_Chr25g0290061' => 'lal', 'Lalb_Chr25g0290071' => 'lal', 'Lj1g0003876' => 'lja', 'Lj1P1207T36' => 'lonja', 'Lj2C1156G12' => 'lonja', 'Lj3A793G39' => 'lonja', 'Lj3C580G2' => 'lonja', 'Lj3C780G2' => 'lonja', 'Lj3C780T4' => 'lonja', 'Lj3C793G9' => 'lonja', 'Lj4g0012960' => 'lja', 'Lj5g0021252' => 'lja', 'Lj5g0021484' => 'lja', 'Lj5g0024528' => 'lja', 'Lj6A399T12' => 'lonja', 'Lj6A656G65' => 'lonja', 'Lsat_1_v5_gn_3_125500' => 'lsa', 'Lsat_1_v5_gn_3_125540' => 'lsa', 'Lsat_1_v5_gn_5_72701' => 'lsa', 'Lsat_1_v5_gn_8_91560' => 'lsa', 'Lsat_1_v5_gn_9_9640' => 'lsa', 'Manes.01G200600' => 'mes', 'Manes.01G200700' => 'mes', 'Manes.03G168900' => 'mes', 'Manes.03G169000' => 'mes', 'Manes.05G085801' => 'mes', 'Manes.05G086200' => 'mes', 'Manes.15G036700' => 'mes', 'Manes.15G036900' => 'mes', 'Mapoly0004s0172' => 'mpo', 'Mapoly0023s0001' => 'mpo', 'Mapoly0142s0012' => 'mpo', 'MBI01_g32854_MAGBIO' => 'mbi', 'MBI11_g24427_MAGBIO' => 'mbi', 'MBI11_g47319_MAGBIO' => 'mbi', 'MCO01G433' => 'mco', 'MD00G1187800' => 'mdo', 'MD04G1226500' => 'mdo', 'MD05G1203900' => 'mdo', 'MD10G1191100' => 'mdo', 'MD12G1243500' => 'mdo', 'MD13G1207000' => 'mdo', 'MD13G1207100' => 'mdo', 'MD16G1208600' => 'mdo', 'Medtr1g050352' => 'mtr', 'Medtr1g070385' => 'mtr', 'Medtr1g070450' => 'mtr', 'Medtr1g075200' => 'mtr', 'Medtr1g075250' => 'mtr', 'Medtr1g075260' => 'mtr', 'Medtr1g475250' => 'mtr', 'Medtr4g075450' => 'mtr', 'Medtr7g096300' => 'mtr', 'Medtr8g105110' => 'mtr', 'MELO3C006470.2' => 'cme', 'MELO3C006471.2' => 'cme', 'MELO3C020772.2' => 'cme', 'MELO3C026780.2' => 'cme', 'MELO3C026781.2' => 'cme', 'Migut.D00390' => 'egut', 'Migut.G00435' => 'egut', 'Migut.G00436' => 'egut', 'Migut.G00718' => 'egut', 'MSTRG.21891' => 'ama', 'MSTRG.26910' => 'ama', 'MSTRG.4099' => 'ama', 'MSTRG.9925' => 'ama', 'Nitab4.5_0000165g0010' => 'nta', 'Nitab4.5_0000209g0180' => 'nta', 'Nitab4.5_0000244g0440' => 'nta', 'Nitab4.5_0000525g0220' => 'nta', 'Nitab4.5_0001597g0020' => 'nta', 'Nitab4.5_0001878g0040' => 'nta', 'Nitab4.5_0001878g0060' => 'nta', 'Nitab4.5_0002838g0100' => 'nta', 'Nitab4.5_0002838g0120' => 'nta', 'Nitab4.5_0004798g0030' => 'nta', 'Nitab4.5_0005420g0010' => 'nta', 'Nitab4.5_0005507g0010' => 'nta', 'Nitab4.5_0005574g0020' => 'nta', 'Nitab4.5_0005838g0010' => 'nta', 'Nitab4.5_0010580g0020' => 'nta', 'Nn1g02599' => 'nnu', 'Nn1g02608' => 'nnu', 'Nn3g17742' => 'nnu', 'Nn3g19534' => 'nnu', 'Nn3g19535' => 'nnu', 'Oeu008790.1' => 'oeu', 'Oeu008792.1' => 'oeu', 'Oeu032590.1' => 'oeu', 'Oeu035349.1' => 'oeu', 'Oeu049791.1' => 'oeu', 'Os01g0774500' => 'osa', 'Os03g0628800' => 'osa', 'Os03g0798600' => 'osa', 'Os05g0508800' => 'osa', 'Peaxi162Scf00036g02018' => 'pax', 'Peaxi162Scf00578g00032' => 'pax', 'Peaxi162Scf00578g00317' => 'pax', 'Peaxi162Scf00785g00114' => 'pax', 'Peaxi162Scf00813g00119' => 'pax', 'Peaxi162Scf00906g00227' => 'pax', 'PGR004G0875' => 'pgr', 'PGR004G2424' => 'pgr', 'PGR031G1239' => 'pgr', 'PGR031G2474' => 'pgr', 'PGR044G0423' => 'pgr', 'PGSC0003DMG400001128' => 'stu', 'PGSC0003DMG400007336' => 'stu', 'PGSC0003DMG400016318' => 'stu', 'PGSC0003DMG400016319' => 'stu', 'PGSC0003DMG400018074' => 'stu', 'Phvul.001G157700' => 'pvu', 'Phvul.002G148550' => 'pvu', 'Phvul.002G320200' => 'pvu', 'Phvul.003G089200' => 'pvu', 'Phvul.007G126000' => 'pvu', 'Phvul.007G126100' => 'pvu', 'Phvul.007G178000' => 'pvu', 'Phvul.007G178200' => 'pvu', 'Potri.002G043000' => 'ptr', 'Potri.002G043200' => 'ptr', 'Potri.003G123750' => 'ptr', 'Potri.005G055401' => 'ptr', 'Potri.005G219700' => 'ptr', 'Potri.005G220000' => 'ptr', 'Potri.008G161901' => 'ptr', 'Potri.008G162000' => 'ptr', 'Potri.008G162400' => 'ptr', 'Potri.010G076900' => 'ptr', 'Pp3c12_9180' => 'ppa', 'Pp3c13_19770' => 'ppa', 'Pp3c14_22950' => 'ppa', 'Pp3c16_12160' => 'ppa', 'Pp3c27_7820' => 'ppa', 'Pp3c2_3490' => 'ppa', 'Pp3c3_23700' => 'ppa', 'Pp3c3_36520' => 'ppa', 'Pp3c4_15250' => 'ppa', 'PRCOL_00007002' => 'pco', 'Prupe.1G030600' => 'ppe', 'Prupe.1G030700' => 'ppe', 'Prupe.6G345200' => 'ppe', 'Prupe.8G230300' => 'ppe', 'Prupe.8G230500' => 'ppe', 'Psat3g059600' => 'psa', 'Psat5g200920' => 'psa', 'Psat6g056440' => 'psa', 'Psat6g057360' => 'psa', 'Psat6g134120' => 'psa', 'Psat6g134160' => 'psa', 'Psat7g008640' => 'psa', 'Psat7g185240' => 'psa', 'PSO017G1330' => 'pso', 'PSO063G6097' => 'pso', 'PSO170G0835' => 'pso', 'PSO170G2499' => 'pso', 'PSO210G5058' => 'pso', 'PSO210G6154' => 'pso', 'PSO585G0031' => 'pso', 'PSO832G0264' => 'pso', 'PSO832G4288' => 'pso', 'QL03p027355' => 'qlo', 'QL03p027430' => 'qlo', 'QL04p081380' => 'qlo', 'QL06p015642' => 'qlo', 'QL06p015650' => 'qlo', 'QL06p015686' => 'qlo', 'QL12p042927' => 'qlo', 'QL93p1863_0035' => 'qlo', 'RcHm_v2.0_Chr3g0450581' => 'rch', 'RcHm_v2.0_Chr4g0390371' => 'rch', 'RcHm_v2.0_Chr4g0390381' => 'rch', 'RcHm_v2.0_Chr4g0390491' => 'rch', 'RcHm_v2.0_Chr4g0390501' => 'rch', 'RcHm_v2.0_Chr6g0289231' => 'rch', 'Rhsim04G0190400' => 'rsi', 'Rhsim04G0190500' => 'rsi', 'Rhsim04G0190600' => 'rsi', 'Rhsim13G0031400' => 'rsi', 'Rhsim13G0165600' => 'rsi', 'RhsimUnG0114600' => 'rsi', 'RhsimUnG0114700' => 'rsi', 'Sabra02G0034800' => 'sbr', 'Sabra02G0035100' => 'sbr', 'Sabra05G0168600' => 'sbr', 'Sabra05G0168800' => 'sbr', 'Sabra08G0123700' => 'sbr', 'Sabra10G0031900' => 'sbr', 'Sabra13G0039000' => 'sbr', 'SalBow2G0782' => 'sbo', 'SalBow2G1403' => 'sbo', 'SalBow4G0074' => 'sbo', 'SalBow4G2635' => 'sbo', 'SalBow5G3010' => 'sbo', 'Sc05g0000870' => 'sci', 'Sc05g0000890' => 'sci', 'Sc13g0005000' => 'sci', 'Sc13g0005030' => 'sci', 'Sc19g0003790' => 'sci', 'Sc19g0003800' => 'sci', 'Sed0003467' => 'sed', 'Sed0009355' => 'sed', 'Sed0009894' => 'sed', 'Sed0011972' => 'sed', 'Sed0021483' => 'sed', 'Sed0021750' => 'sed', 'Sed0026279' => 'sed', 'SEGI_05312' => 'sgi', 'SEGI_10112' => 'sgi', 'SEGI_15835' => 'sgi', 'SEGI_30386' => 'sgi', 'SEGI_34122' => 'sgi', 'SEGI_35063' => 'sgi', 'SGA_v2.0_scaffold101G29794' => 'sas', 'SGA_v2.0_scaffold1G00573' => 'sas', 'SGA_v2.0_scaffold79G25637' => 'sas', 'SGA_v2.0_scaffold88G27283' => 'sas', 'SGA_v2.0_scaffold88G27285' => 'sas', 'SGA_v2.0_scaffold88G27331' => 'sas', 'SHI09937' => 'shi', 'SMO119G0302' => 'smo', 'SMO137G0231' => 'smo', 'SMO367G1151' => 'smo', 'Solyc02g082000.3' => 'sly', 'Solyc06g031670.3' => 'sly', 'Solyc06g053810.3' => 'sly', 'Solyc07g025457.1' => 'sly', 'Solyc08g059740.1' => 'sly', 'Solyc08g059750.3' => 'sly', 'Solyc09g083370.3' => 'sly', 'Solyc12g038950.3' => 'sly', 'Sopen02g026630' => 'spe', 'Sopen06g018930' => 'spe', 'Sopen06g018940' => 'spe', 'Sopen08g009460' => 'spe', 'Sopen09g032290' => 'spe', 'Sp1g03080' => 'spa', 'Sp1g03090' => 'spa', 'Sp1g05480' => 'spa', 'Sp2g07860' => 'spa', 'Sp2g08430' => 'spa', 'Sp2g08440' => 'spa', 'Sp2g26200' => 'spa', 'Sp4g13170' => 'spa', 'Sp6g33840' => 'spa', 'SpUn1204_0010' => 'spa', 'TAR365G0908' => 'tar', 'TAR381G1270' => 'tar', 'TAR381G1651' => 'tar', 'TAR625G1131' => 'tar', 'TAR633G0962' => 'tar', 'TAR633G1729' => 'tar', 'TAR633G1864' => 'tar', 'TAR636G0221' => 'tar', 'TAR636G0314' => 'tar', 'TAR636G3202' => 'tar', 'THA.LOC104800805' => 'tha', 'THA.LOC104801096' => 'tha', 'THA.LOC104801555' => 'tha', 'THA.LOC104808491' => 'tha', 'THA.LOC104808595' => 'tha', 'THA.LOC104815985' => 'tha', 'THA.LOC104822250' => 'tha', 'THA.LOC104826071' => 'tha', 'Thecc.01G265200' => 'tca', 'Thecc.01G265300' => 'tca', 'Thecc.01G265700' => 'tca', 'Thecc.03G109100' => 'tca', 'Thecc.04G245900' => 'tca', 'Thecc.04G246000' => 'tca', 'Thhalv10003334m.g' => 'esa', 'Thhalv10005508m.g' => 'esa', 'Thhalv10005643m.g' => 'esa', 'Thhalv10007316m.g' => 'esa', 'Thhalv10009006m.g' => 'esa', 'Thhalv10009309m.g' => 'esa', 'Thhalv10014917m.g' => 'esa', 'Thhalv10014919m.g' => 'esa', 'Thhalv10015393m.g' => 'esa', 'Thhalv10016515m.g' => 'esa', 'Thhalv10029242m.g' => 'esa', 'TPR.G16654' => 'tpr', 'TPR.G20589' => 'tpr', 'TPR.G23029' => 'tpr', 'TPR.G27731' => 'tpr', 'TPR.G28889' => 'tpr', 'TPR.G28899' => 'tpr', 'TPR.G30846' => 'tpr', 'TPR.G5452' => 'tpr', 'TPR.G5713' => 'tpr', 'TPR.G9046' => 'tpr', 'TPR.G9061' => 'tpr', 'TWI09G1075' => 'twi', 'TWI12G0806' => 'twi', 'TWI18G0108' => 'twi', 'TWI53G1361' => 'twi', 'TWI73G0185' => 'twi', 'TWI73G0427' => 'twi', 'unitig_37.g12001' => 'ugi', 'unitig_747.g21660' => 'ugi', 'unitig_748.g7232' => 'ugi', 'unitig_748.g7315' => 'ugi', 'unitig_85.g27262' => 'ugi', 'unitig_92.g28220' => 'ugi', 'vmacro02632' => 'vma', 'vmacro08410' => 'vma', 'vmacro08411' => 'vma', 'vmacro15407' => 'vma', 'VMungo0251G3619' => 'vmu', 'VMungo0720G1204' => 'vmu', 'VMungo0720G1918' => 'vmu', 'VMungo0720G2387' => 'vmu', 'VMungo0720G2961' => 'vmu', 'VMungo1215G2154' => 'vmu', 'VMungo1383G2411' => 'vmu', 'Zm00001eb051130' => 'zma', 'Zm00001eb116830' => 'zma', 'Zm00001eb116850' => 'zma', 'Zm00001eb151740' => 'zma', 'Zm00001eb292360' => 'zma', 'Zm00001eb301640' => 'zma' ), 'gf_id' => 'HOM05D000856', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000856' ), 'data_identifier' => 'HOM05D000856', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000856', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p00010' => 'bna', 'A03p04160' => 'bna', 'A03p17160' => 'bna', 'A04p23370' => 'bna', 'A05p14860' => 'bna', 'A08p37020' => 'bna', 'A09p08050' => 'bna', 'A09p66800' => 'bna', 'A09p67940' => 'bna', 'A10p02680' => 'bna', 'A10p05320' => 'bna', 'Aa31LG1G20560' => 'aar', 'Aa31LG1G20610' => 'aar', 'Aa31LG1G7810' => 'aar', 'Aa31LG5G3590' => 'aar', 'Aa31LG5G6140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3819' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4683' => 'aag', 'Actinidia04480' => 'ach', 'Actinidia05466' => 'ach', 'Actinidia08445' => 'ach', 'Actinidia21170' => 'ach', 'Actinidia24812' => 'ach', 'Actinidia24951' => 'ach', 'Actinidia40088' => 'ach', 'Ah.02g111660' => 'amhyb', 'Ah.11g048900' => 'amhyb', 'Ah.11g049910' => 'amhyb', 'AL1G13870' => 'aly', 'AL1G13880' => 'aly', 'AL1G16760' => 'aly', 'AL390U10020' => 'aly', 'AL4G25520' => 'aly', 'AL6G19890' => 'aly', 'AL6G19900' => 'aly', 'AL6G19910' => 'aly', 'AL8G40100' => 'aly', 'Aqoxy2G03562' => 'aox', 'Aqoxy5G00316' => 'aox', 'Aqoxy5G00926' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1628KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1H403S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2FU6SJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.882I6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8YRY2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YN1SN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AF70II' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZA8L1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F916KL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHRD8H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KTZ8QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S22EMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8M29T' => 'arhy', 'AT1G04270' => 'ath', 'AT1G04280' => 'ath', 'AT1G06750' => 'ath', 'AT1G33850' => 'ath', 'AT2G30630' => 'ath', 'AT5G09490' => 'ath', 'AT5G09500' => 'ath', 'AT5G09510' => 'ath', 'AT5G43640' => 'ath', 'AT5G63070' => 'ath', 'ATR0605G315' => 'atr', 'Atru.chr11.175' => 'acertr', 'Atru.chr11.653' => 'acertr', 'Atru.chr3.1616' => 'acertr', 'Atru.chr4.2230' => 'acertr', 'Atru.chr4.2232' => 'acertr', 'Atru.chr5.1598' => 'acertr', 'Atru.chr5.1600' => 'acertr', 'Atru.chr5.2188' => 'acertr', 'AUR62008326' => 'cqu', 'AUR62011922' => 'cqu', 'AUR62011924' => 'cqu', 'AUR62021771' => 'cqu', 'AUR62032237' => 'cqu', 'AUR62032240' => 'cqu', 'BcaB01g05572' => 'bca', 'BcaB02g10337' => 'bca', 'BcaB04g19944' => 'bca', 'BcaB05g21548' => 'bca', 'BcaB05g21549' => 'bca', 'BcaB05g23227' => 'bca', 'BcaB06g26256' => 'bca', 'BcaB06g26257' => 'bca', 'BcaB06g28379' => 'bca', 'BcaC02g11159' => 'bca', 'BcaC03g13258' => 'bca', 'BcaC03g13259' => 'bca', 'BcaC05g24456' => 'bca', 'BcaC05g24457' => 'bca', 'BcaC07g36922' => 'bca', 'BcaC07g36923' => 'bca', 'BcaC07g42050' => 'bca', 'BcaC07g42176' => 'bca', 'BcaC07g42195' => 'bca', 'BcaC07g42196' => 'bca', 'BcaNung06674' => 'bca', 'BolC2t06351H' => 'bol', 'BolC2t06352H' => 'bol', 'BolC3t12993H' => 'bol', 'BolC4t23525H' => 'bol', 'BolC4t27475H' => 'bol', 'BolC5t29025H' => 'bol', 'BolC5t29026H' => 'bol', 'BolC8t46898H' => 'bol', 'BolC8t46899H' => 'bol', 'BolC8t52630H' => 'bol', 'BolC8t52765H' => 'bol', 'BolC9t53824H' => 'bol', 'BraA03t09760Z' => 'bra', 'BraA03t10990Z' => 'bra', 'BraA05t20413Z' => 'bra', 'BraA08t35602Z' => 'bra', 'BraA09t36458Z' => 'bra', 'BraA09t42018Z' => 'bra', 'BraA09t42129Z' => 'bra', 'BraA10t42536Z' => 'bra', 'BraA10t42537Z' => 'bra', 'C01p10690' => 'bna', 'C02p03890' => 'bna', 'C02p03900' => 'bna', 'C03p04620' => 'bna', 'C04p19870' => 'bna', 'C04p59670' => 'bna', 'C05p02460' => 'bna', 'C05p02470' => 'bna', 'C08p00980' => 'bna', 'C08p00990' => 'bna', 'C08p51030' => 'bna', 'C08p52360' => 'bna', 'C09p09120' => 'bna', 'CAN.G19.15' => 'can', 'CAN.G251.10' => 'can', 'CAN.G251.9' => 'can', 'CAN.G398.24' => 'can', 'CAN.G410.32' => 'can', 'CAN.G881.2' => 'can', 'CANSAT01G3025' => 'cansat', 'CANSAT78G1211' => 'cansat', 'CANSAT78G1218' => 'cansat', 'CANSAT78G1521' => 'cansat', 'CANSAT78G1670' => 'cansat', 'CARHR003600' => 'chi', 'CARHR003610' => 'chi', 'CARHR006290' => 'chi', 'CARHR006430' => 'chi', 'CARHR124110' => 'chi', 'CARHR203870' => 'chi', 'CARHR203880' => 'chi', 'CARHR203890' => 'chi', 'CARHR276880' => 'chi', 'Carub.0001s0346' => 'cru', 'Carub.0001s0347' => 'cru', 'Carub.0001s0607' => 'cru', 'Carub.0003s2768' => 'cru', 'Carub.0003s2769' => 'cru', 'Carub.0004s1178' => 'cru', 'Carub.0006s0806' => 'cru', 'Carub.0006s0807' => 'cru', 'Carub.0006s0808' => 'cru', 'Carub.0008s0501' => 'cru', 'Carub.0008s2379' => 'cru', 'Ca_08655_v3' => 'car', 'Ca_08922_v3' => 'car', 'Ca_08923_v3' => 'car', 'Ca_09119_v3' => 'car', 'Ca_09703_v3' => 'car', 'Ca_09705_v3' => 'car', 'Ca_09835_v3' => 'car', 'Ca_26403_v3' => 'car', 'Ca_30719_v3' => 'car', 'CBR_g17958' => 'cbr', 'CBR_g40516' => 'cbr', 'Cc00_g05350' => 'ccan', 'Cc01_g18690' => 'ccan', 'Cc03_g04830' => 'ccan', 'Cc03_g04850' => 'ccan', 'CDE02G4469' => 'cde', 'CDE06G0883' => 'cde', 'CDE06G1295' => 'cde', 'CDE06G1390' => 'cde', 'CDE07G0584' => 'cde', 'CDE07G1084' => 'cde', 'CDE08G1259' => 'cde', 'Cfa002341' => 'cfa', 'Cfa024337' => 'cfa', 'Ciclev10004749m.g' => 'ccl', 'Ciclev10006127m.g' => 'ccl', 'Ciclev10019720m.g' => 'ccl', 'Ciclev10022652m.g' => 'ccl', 'CiPaw.01G190400' => 'cil', 'CiPaw.01G190500' => 'cil', 'CiPaw.02G116400' => 'cil', 'CiPaw.02G116500' => 'cil', 'CiPaw.04G183000' => 'cil', 'CiPaw.04G183300' => 'cil', 'ClCG05G004610' => 'cla', 'ClCG05G004620' => 'cla', 'ClCG06G006730' => 'cla', 'ClCG06G006740' => 'cla', 'ClCG11G003690' => 'cla', 'COL.COLO4_08276' => 'col', 'COL.COLO4_08277' => 'col', 'COL.COLO4_15787' => 'col', 'COL.COLO4_15789' => 'col', 'Cpa.g.c44815' => 'cpa', 'Cpa.g.sc52.144' => 'cpa', 'Cpa.g.sc58.46' => 'cpa', 'Cpa.g.sc58.47' => 'cpa', 'Cre08.g360900' => 'cre', 'CsaV3_2G013030' => 'csa', 'CsaV3_2G013050' => 'csa', 'CsaV3_2G015620' => 'csa', 'CsaV3_3G012590' => 'csa', 'CsaV3_3G012600' => 'csa', 'CSS0001641' => 'camsi', 'CSS0008310' => 'camsi', 'CSS0013011' => 'camsi', 'CSS0017147' => 'camsi', 'CSS0022970' => 'camsi', 'CSS0025655' => 'camsi', 'CSS0028665' => 'camsi', 'CSS0029117' => 'camsi', 'CSS0032024' => 'camsi', 'CSS0039681' => 'camsi', 'CSS0046516' => 'camsi', 'CSS0050307' => 'camsi', 'DCAR_005871' => 'dca', 'DCAR_007342' => 'dca', 'DCAR_024228' => 'dca', 'DCAR_027277' => 'dca', 'DCAR_030718' => 'dca', 'Dinv20287' => 'din', 'Dinv22461' => 'din', 'Dinv22464' => 'din', 'Dinv29912' => 'din', 'Dinv29913' => 'din', 'Dinv34580' => 'din', 'Dinv34582' => 'din', 'Dinv44632' => 'din', 'Duzib052G0266' => 'dzi', 'Duzib133G0907' => 'dzi', 'Duzib133G1034' => 'dzi', 'Duzib138G0207' => 'dzi', 'Duzib138G0491' => 'dzi', 'Duzib151G0812' => 'dzi', 'Duzib151G1166' => 'dzi', 'Duzib168G0192' => 'dzi', 'Duzib211G0077' => 'dzi', 'Duzib212G0429' => 'dzi', 'Duzib212G0472' => 'dzi', 'ECA233G2617' => 'eca', 'ECA236G4188' => 'eca', 'ECA240G0936' => 'eca', 'ECA240G1129' => 'eca', 'ECA247G0623' => 'eca', 'EL10Ac5g10451' => 'bvu', 'EL10Ac5g10453' => 'bvu', 'EL10Ac5g10894' => 'bvu', 'Eucgr.H00192' => 'egr', 'Eucgr.H00193' => 'egr', 'Eucgr.H00194' => 'egr', 'Eucgr.J01562' => 'egr', 'Eucgr.K03301' => 'egr', 'FAN02G0632' => 'fan', 'FAN05G5378' => 'fan', 'FAN09G3247' => 'fan', 'FAN12G0435' => 'fan', 'FAN12G2426' => 'fan', 'FAN14G1707' => 'fan', 'FAN14G4725' => 'fan', 'FAN15G2071' => 'fan', 'FAN17G3065' => 'fan', 'FAN19G1376' => 'fan', 'FAN20G0354' => 'fan', 'FAN20G2429' => 'fan', 'FAN20G2658' => 'fan', 'FAN24G2343' => 'fan', 'FAN27G2362' => 'fan', 'FAN28G1765' => 'fan', 'FvH4_1g16020' => 'fve', 'FvH4_2g04890' => 'fve', 'FvH4_2g22270' => 'fve', 'FvH4_4g02630' => 'fve', 'FvH4_4g02640' => 'fve', 'FvH4_6g02650' => 'fve', 'Glyma.02G140600' => 'gma', 'Glyma.03G159900' => 'gma', 'Glyma.05G234800' => 'gma', 'Glyma.07G269600' => 'gma', 'Glyma.08G042300' => 'gma', 'Glyma.10G033500' => 'gma', 'Glyma.10G185200' => 'gma', 'Glyma.17G004300' => 'gma', 'Glyma.19G161900' => 'gma', 'Glyma.20G205100' => 'gma', 'Glyma.20G205200' => 'gma', 'Gohir.A01G139101' => 'ghi', 'Gohir.A02G035600' => 'ghi', 'Gohir.A02G117901' => 'ghi', 'Gohir.A07G210100' => 'ghi', 'Gohir.A07G210200' => 'ghi', 'Gohir.A08G061100' => 'ghi', 'Gohir.A09G223000' => 'ghi', 'Gohir.A09G223100' => 'ghi', 'Gohir.A10G113900' => 'ghi', 'Gohir.A10G114000' => 'ghi', 'Gohir.D02G042300' => 'ghi', 'Gohir.D07G216100' => 'ghi', 'Gohir.D07G216200' => 'ghi', 'Gohir.D08G070400' => 'ghi', 'Gohir.D09G225000' => 'ghi', 'Gohir.D09G225100' => 'ghi', 'Gohir.D10G152300' => 'ghi', 'Gohir.D10G153200' => 'ghi', 'Gohir.D11G133701' => 'ghi', 'Gorai.004G074100' => 'gra', 'Gorai.005G046800' => 'gra', 'Gorai.006G246500' => 'gra', 'Gorai.006G246600' => 'gra', 'Gorai.007G142900' => 'gra', 'Gorai.011G171000' => 'gra', 'Gorai.011G171100' => 'gra', 'Gorai.013G104300' => 'gra', 'Gorai.013G104400' => 'gra', 'GSVIVG01000754001' => 'vvi', 'GSVIVG01000756001' => 'vvi', 'GSVIVG01010903001' => 'vvi', 'GSVIVG01017623001' => 'vvi', 'GSVIVG01018113001' => 'vvi', 'GSVIVG01018116001' => 'vvi', 'GSVIVG01018118001' => 'vvi', 'HanXRQChr03g0076211' => 'han', 'HanXRQChr03g0092431' => 'han', 'HanXRQChr03g0092441' => 'han', 'HanXRQChr03g0092591' => 'han', 'HanXRQChr03g0092671' => 'han', 'HanXRQChr03g0092681' => 'han', 'HanXRQChr03g0092691' => 'han', 'HanXRQChr03g0092701' => 'han', 'HanXRQChr03g0092721' => 'han', 'HanXRQChr03g0092731' => 'han', 'HanXRQChr04g0113681' => 'han', 'HanXRQChr10g0281371' => 'han', 'HanXRQChr11g0337141' => 'han', 'HanXRQChr13g0424521' => 'han', 'HanXRQChr13g0424531' => 'han', 'HanXRQChr13g0424541' => 'han', 'HanXRQChr16g0498221' => 'han', 'Haze_04377' => 'cav', 'Haze_11298' => 'cav', 'Haze_24547' => 'cav', 'Haze_24550' => 'cav', 'Haze_26587' => 'cav', 'Hma1.2p1_0650F.1_g195410' => 'hma', 'Hma1.2p1_0893F.1_g233470' => 'hma', 'HPP92_006508' => 'vpl', 'HPP92_024780' => 'vpl', 'Hund02688' => 'sun', 'Hund09380' => 'sun', 'Hund09381' => 'sun', 'Hund09832' => 'sun', 'Hund09833' => 'sun', 'Hund11351' => 'sun', 'Hund11513' => 'sun', 'Lalb_Chr06g0162591' => 'lal', 'Lalb_Chr06g0162601' => 'lal', 'Lalb_Chr06g0169321' => 'lal', 'Lalb_Chr09g0330951' => 'lal', 'Lalb_Chr16g0387631' => 'lal', 'Lalb_Chr21g0306241' => 'lal', 'Lalb_Chr25g0290051' => 'lal', 'Lalb_Chr25g0290061' => 'lal', 'Lalb_Chr25g0290071' => 'lal', 'Lj1g0003876' => 'lja', 'Lj1P1207T36' => 'lonja', 'Lj2C1156G12' => 'lonja', 'Lj3A793G39' => 'lonja', 'Lj3C580G2' => 'lonja', 'Lj3C780G2' => 'lonja', 'Lj3C780T4' => 'lonja', 'Lj3C793G9' => 'lonja', 'Lj4g0012960' => 'lja', 'Lj5g0021252' => 'lja', 'Lj5g0021484' => 'lja', 'Lj5g0024528' => 'lja', 'Lj6A399T12' => 'lonja', 'Lj6A656G65' => 'lonja', 'Lsat_1_v5_gn_3_125500' => 'lsa', 'Lsat_1_v5_gn_3_125540' => 'lsa', 'Lsat_1_v5_gn_5_72701' => 'lsa', 'Lsat_1_v5_gn_8_91560' => 'lsa', 'Lsat_1_v5_gn_9_9640' => 'lsa', 'Manes.01G200600' => 'mes', 'Manes.01G200700' => 'mes', 'Manes.03G168900' => 'mes', 'Manes.03G169000' => 'mes', 'Manes.05G085801' => 'mes', 'Manes.05G086200' => 'mes', 'Manes.15G036700' => 'mes', 'Manes.15G036900' => 'mes', 'Mapoly0004s0172' => 'mpo', 'Mapoly0023s0001' => 'mpo', 'Mapoly0142s0012' => 'mpo', 'MBI01_g32854_MAGBIO' => 'mbi', 'MBI11_g24427_MAGBIO' => 'mbi', 'MBI11_g47319_MAGBIO' => 'mbi', 'MCO01G433' => 'mco', 'MD00G1187800' => 'mdo', 'MD04G1226500' => 'mdo', 'MD05G1203900' => 'mdo', 'MD10G1191100' => 'mdo', 'MD12G1243500' => 'mdo', 'MD13G1207000' => 'mdo', 'MD13G1207100' => 'mdo', 'MD16G1208600' => 'mdo', 'Medtr1g050352' => 'mtr', 'Medtr1g070385' => 'mtr', 'Medtr1g070450' => 'mtr', 'Medtr1g075200' => 'mtr', 'Medtr1g075250' => 'mtr', 'Medtr1g075260' => 'mtr', 'Medtr1g475250' => 'mtr', 'Medtr4g075450' => 'mtr', 'Medtr7g096300' => 'mtr', 'Medtr8g105110' => 'mtr', 'MELO3C006470.2' => 'cme', 'MELO3C006471.2' => 'cme', 'MELO3C020772.2' => 'cme', 'MELO3C026780.2' => 'cme', 'MELO3C026781.2' => 'cme', 'Migut.D00390' => 'egut', 'Migut.G00435' => 'egut', 'Migut.G00436' => 'egut', 'Migut.G00718' => 'egut', 'MSTRG.21891' => 'ama', 'MSTRG.26910' => 'ama', 'MSTRG.4099' => 'ama', 'MSTRG.9925' => 'ama', 'Nitab4.5_0000165g0010' => 'nta', 'Nitab4.5_0000209g0180' => 'nta', 'Nitab4.5_0000244g0440' => 'nta', 'Nitab4.5_0000525g0220' => 'nta', 'Nitab4.5_0001597g0020' => 'nta', 'Nitab4.5_0001878g0040' => 'nta', 'Nitab4.5_0001878g0060' => 'nta', 'Nitab4.5_0002838g0100' => 'nta', 'Nitab4.5_0002838g0120' => 'nta', 'Nitab4.5_0004798g0030' => 'nta', 'Nitab4.5_0005420g0010' => 'nta', 'Nitab4.5_0005507g0010' => 'nta', 'Nitab4.5_0005574g0020' => 'nta', 'Nitab4.5_0005838g0010' => 'nta', 'Nitab4.5_0010580g0020' => 'nta', 'Nn1g02599' => 'nnu', 'Nn1g02608' => 'nnu', 'Nn3g17742' => 'nnu', 'Nn3g19534' => 'nnu', 'Nn3g19535' => 'nnu', 'Oeu008790.1' => 'oeu', 'Oeu008792.1' => 'oeu', 'Oeu032590.1' => 'oeu', 'Oeu035349.1' => 'oeu', 'Oeu049791.1' => 'oeu', 'Os01g0774500' => 'osa', 'Os03g0628800' => 'osa', 'Os03g0798600' => 'osa', 'Os05g0508800' => 'osa', 'Peaxi162Scf00036g02018' => 'pax', 'Peaxi162Scf00578g00032' => 'pax', 'Peaxi162Scf00578g00317' => 'pax', 'Peaxi162Scf00785g00114' => 'pax', 'Peaxi162Scf00813g00119' => 'pax', 'Peaxi162Scf00906g00227' => 'pax', 'PGR004G0875' => 'pgr', 'PGR004G2424' => 'pgr', 'PGR031G1239' => 'pgr', 'PGR031G2474' => 'pgr', 'PGR044G0423' => 'pgr', 'PGSC0003DMG400001128' => 'stu', 'PGSC0003DMG400007336' => 'stu', 'PGSC0003DMG400016318' => 'stu', 'PGSC0003DMG400016319' => 'stu', 'PGSC0003DMG400018074' => 'stu', 'Phvul.001G157700' => 'pvu', 'Phvul.002G148550' => 'pvu', 'Phvul.002G320200' => 'pvu', 'Phvul.003G089200' => 'pvu', 'Phvul.007G126000' => 'pvu', 'Phvul.007G126100' => 'pvu', 'Phvul.007G178000' => 'pvu', 'Phvul.007G178200' => 'pvu', 'Potri.002G043000' => 'ptr', 'Potri.002G043200' => 'ptr', 'Potri.003G123750' => 'ptr', 'Potri.005G055401' => 'ptr', 'Potri.005G219700' => 'ptr', 'Potri.005G220000' => 'ptr', 'Potri.008G161901' => 'ptr', 'Potri.008G162000' => 'ptr', 'Potri.008G162400' => 'ptr', 'Potri.010G076900' => 'ptr', 'Pp3c12_9180' => 'ppa', 'Pp3c13_19770' => 'ppa', 'Pp3c14_22950' => 'ppa', 'Pp3c16_12160' => 'ppa', 'Pp3c27_7820' => 'ppa', 'Pp3c2_3490' => 'ppa', 'Pp3c3_23700' => 'ppa', 'Pp3c3_36520' => 'ppa', 'Pp3c4_15250' => 'ppa', 'PRCOL_00007002' => 'pco', 'Prupe.1G030600' => 'ppe', 'Prupe.1G030700' => 'ppe', 'Prupe.6G345200' => 'ppe', 'Prupe.8G230300' => 'ppe', 'Prupe.8G230500' => 'ppe', 'Psat3g059600' => 'psa', 'Psat5g200920' => 'psa', 'Psat6g056440' => 'psa', 'Psat6g057360' => 'psa', 'Psat6g134120' => 'psa', 'Psat6g134160' => 'psa', 'Psat7g008640' => 'psa', 'Psat7g185240' => 'psa', 'PSO017G1330' => 'pso', 'PSO063G6097' => 'pso', 'PSO170G0835' => 'pso', 'PSO170G2499' => 'pso', 'PSO210G5058' => 'pso', 'PSO210G6154' => 'pso', 'PSO585G0031' => 'pso', 'PSO832G0264' => 'pso', 'PSO832G4288' => 'pso', 'QL03p027355' => 'qlo', 'QL03p027430' => 'qlo', 'QL04p081380' => 'qlo', 'QL06p015642' => 'qlo', 'QL06p015650' => 'qlo', 'QL06p015686' => 'qlo', 'QL12p042927' => 'qlo', 'QL93p1863_0035' => 'qlo', 'RcHm_v2.0_Chr3g0450581' => 'rch', 'RcHm_v2.0_Chr4g0390371' => 'rch', 'RcHm_v2.0_Chr4g0390381' => 'rch', 'RcHm_v2.0_Chr4g0390491' => 'rch', 'RcHm_v2.0_Chr4g0390501' => 'rch', 'RcHm_v2.0_Chr6g0289231' => 'rch', 'Rhsim04G0190400' => 'rsi', 'Rhsim04G0190500' => 'rsi', 'Rhsim04G0190600' => 'rsi', 'Rhsim13G0031400' => 'rsi', 'Rhsim13G0165600' => 'rsi', 'RhsimUnG0114600' => 'rsi', 'RhsimUnG0114700' => 'rsi', 'Sabra02G0034800' => 'sbr', 'Sabra02G0035100' => 'sbr', 'Sabra05G0168600' => 'sbr', 'Sabra05G0168800' => 'sbr', 'Sabra08G0123700' => 'sbr', 'Sabra10G0031900' => 'sbr', 'Sabra13G0039000' => 'sbr', 'SalBow2G0782' => 'sbo', 'SalBow2G1403' => 'sbo', 'SalBow4G0074' => 'sbo', 'SalBow4G2635' => 'sbo', 'SalBow5G3010' => 'sbo', 'Sc05g0000870' => 'sci', 'Sc05g0000890' => 'sci', 'Sc13g0005000' => 'sci', 'Sc13g0005030' => 'sci', 'Sc19g0003790' => 'sci', 'Sc19g0003800' => 'sci', 'Sed0003467' => 'sed', 'Sed0009355' => 'sed', 'Sed0009894' => 'sed', 'Sed0011972' => 'sed', 'Sed0021483' => 'sed', 'Sed0021750' => 'sed', 'Sed0026279' => 'sed', 'SEGI_05312' => 'sgi', 'SEGI_10112' => 'sgi', 'SEGI_15835' => 'sgi', 'SEGI_30386' => 'sgi', 'SEGI_34122' => 'sgi', 'SEGI_35063' => 'sgi', 'SGA_v2.0_scaffold101G29794' => 'sas', 'SGA_v2.0_scaffold1G00573' => 'sas', 'SGA_v2.0_scaffold79G25637' => 'sas', 'SGA_v2.0_scaffold88G27283' => 'sas', 'SGA_v2.0_scaffold88G27285' => 'sas', 'SGA_v2.0_scaffold88G27331' => 'sas', 'SHI09937' => 'shi', 'SMO119G0302' => 'smo', 'SMO137G0231' => 'smo', 'SMO367G1151' => 'smo', 'Solyc02g082000.3' => 'sly', 'Solyc06g031670.3' => 'sly', 'Solyc06g053810.3' => 'sly', 'Solyc07g025457.1' => 'sly', 'Solyc08g059740.1' => 'sly', 'Solyc08g059750.3' => 'sly', 'Solyc09g083370.3' => 'sly', 'Solyc12g038950.3' => 'sly', 'Sopen02g026630' => 'spe', 'Sopen06g018930' => 'spe', 'Sopen06g018940' => 'spe', 'Sopen08g009460' => 'spe', 'Sopen09g032290' => 'spe', 'Sp1g03080' => 'spa', 'Sp1g03090' => 'spa', 'Sp1g05480' => 'spa', 'Sp2g07860' => 'spa', 'Sp2g08430' => 'spa', 'Sp2g08440' => 'spa', 'Sp2g26200' => 'spa', 'Sp4g13170' => 'spa', 'Sp6g33840' => 'spa', 'SpUn1204_0010' => 'spa', 'TAR365G0908' => 'tar', 'TAR381G1270' => 'tar', 'TAR381G1651' => 'tar', 'TAR625G1131' => 'tar', 'TAR633G0962' => 'tar', 'TAR633G1729' => 'tar', 'TAR633G1864' => 'tar', 'TAR636G0221' => 'tar', 'TAR636G0314' => 'tar', 'TAR636G3202' => 'tar', 'THA.LOC104800805' => 'tha', 'THA.LOC104801096' => 'tha', 'THA.LOC104801555' => 'tha', 'THA.LOC104808491' => 'tha', 'THA.LOC104808595' => 'tha', 'THA.LOC104815985' => 'tha', 'THA.LOC104822250' => 'tha', 'THA.LOC104826071' => 'tha', 'Thecc.01G265200' => 'tca', 'Thecc.01G265300' => 'tca', 'Thecc.01G265700' => 'tca', 'Thecc.03G109100' => 'tca', 'Thecc.04G245900' => 'tca', 'Thecc.04G246000' => 'tca', 'Thhalv10003334m.g' => 'esa', 'Thhalv10005508m.g' => 'esa', 'Thhalv10005643m.g' => 'esa', 'Thhalv10007316m.g' => 'esa', 'Thhalv10009006m.g' => 'esa', 'Thhalv10009309m.g' => 'esa', 'Thhalv10014917m.g' => 'esa', 'Thhalv10014919m.g' => 'esa', 'Thhalv10015393m.g' => 'esa', 'Thhalv10016515m.g' => 'esa', 'Thhalv10029242m.g' => 'esa', 'TPR.G16654' => 'tpr', 'TPR.G20589' => 'tpr', 'TPR.G23029' => 'tpr', 'TPR.G27731' => 'tpr', 'TPR.G28889' => 'tpr', 'TPR.G28899' => 'tpr', 'TPR.G30846' => 'tpr', 'TPR.G5452' => 'tpr', 'TPR.G5713' => 'tpr', 'TPR.G9046' => 'tpr', 'TPR.G9061' => 'tpr', 'TWI09G1075' => 'twi', 'TWI12G0806' => 'twi', 'TWI18G0108' => 'twi', 'TWI53G1361' => 'twi', 'TWI73G0185' => 'twi', 'TWI73G0427' => 'twi', 'unitig_37.g12001' => 'ugi', 'unitig_747.g21660' => 'ugi', 'unitig_748.g7232' => 'ugi', 'unitig_748.g7315' => 'ugi', 'unitig_85.g27262' => 'ugi', 'unitig_92.g28220' => 'ugi', 'vmacro02632' => 'vma', 'vmacro08410' => 'vma', 'vmacro08411' => 'vma', 'vmacro15407' => 'vma', 'VMungo0251G3619' => 'vmu', 'VMungo0720G1204' => 'vmu', 'VMungo0720G1918' => 'vmu', 'VMungo0720G2387' => 'vmu', 'VMungo0720G2961' => 'vmu', 'VMungo1215G2154' => 'vmu', 'VMungo1383G2411' => 'vmu', 'Zm00001eb051130' => 'zma', 'Zm00001eb116830' => 'zma', 'Zm00001eb116850' => 'zma', 'Zm00001eb151740' => 'zma', 'Zm00001eb292360' => 'zma', 'Zm00001eb301640' => 'zma' ) $gf_id = 'HOM05D000856' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000856' ) $data_identifier = 'HOM05D000856' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 13, 'ath' => (int) 10, 'atr' => (int) 1, 'acertr' => (int) 8, 'cqu' => (int) 6, 'bca' => (int) 21, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 11, 'car' => (int) 9, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 8, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 5, 'fan' => (int) 16, 'fve' => (int) 6, 'gma' => (int) 11, 'ghi' => (int) 19, 'gra' => (int) 9, 'vvi' => (int) 7, 'han' => (int) 17, 'cav' => (int) 5, 'hma' => (int) 2, 'vpl' => (int) 2, 'sun' => (int) 7, 'lal' => (int) 9, 'lja' => (int) 5, 'lonja' => (int) 9, 'lsa' => (int) 5, 'mes' => (int) 8, 'mpo' => (int) 3, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 10, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 15, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 9, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 9, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 6, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 5, 'spa' => (int) 10, 'tar' => (int) 10, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 11, 'tpr' => (int) 11, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 4, 'vmu' => (int) 7, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb301640' $species_info = array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ) $local_species = 'esa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000856', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p00010' => 'bna', 'A03p04160' => 'bna', 'A03p17160' => 'bna', 'A04p23370' => 'bna', 'A05p14860' => 'bna', 'A08p37020' => 'bna', 'A09p08050' => 'bna', 'A09p66800' => 'bna', 'A09p67940' => 'bna', 'A10p02680' => 'bna', 'A10p05320' => 'bna', 'Aa31LG1G20560' => 'aar', 'Aa31LG1G20610' => 'aar', 'Aa31LG1G7810' => 'aar', 'Aa31LG5G3590' => 'aar', 'Aa31LG5G6140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3819' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4683' => 'aag', 'Actinidia04480' => 'ach', 'Actinidia05466' => 'ach', 'Actinidia08445' => 'ach', 'Actinidia21170' => 'ach', 'Actinidia24812' => 'ach', 'Actinidia24951' => 'ach', 'Actinidia40088' => 'ach', 'Ah.02g111660' => 'amhyb', 'Ah.11g048900' => 'amhyb', 'Ah.11g049910' => 'amhyb', 'AL1G13870' => 'aly', 'AL1G13880' => 'aly', 'AL1G16760' => 'aly', 'AL390U10020' => 'aly', 'AL4G25520' => 'aly', 'AL6G19890' => 'aly', 'AL6G19900' => 'aly', 'AL6G19910' => 'aly', 'AL8G40100' => 'aly', 'Aqoxy2G03562' => 'aox', 'Aqoxy5G00316' => 'aox', 'Aqoxy5G00926' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1628KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1H403S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2FU6SJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.882I6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8YRY2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YN1SN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AF70II' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZA8L1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F916KL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHRD8H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KTZ8QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S22EMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8M29T' => 'arhy', 'AT1G04270' => 'ath', 'AT1G04280' => 'ath', 'AT1G06750' => 'ath', 'AT1G33850' => 'ath', 'AT2G30630' => 'ath', 'AT5G09490' => 'ath', 'AT5G09500' => 'ath', 'AT5G09510' => 'ath', 'AT5G43640' => 'ath', 'AT5G63070' => 'ath', 'ATR0605G315' => 'atr', 'Atru.chr11.175' => 'acertr', 'Atru.chr11.653' => 'acertr', 'Atru.chr3.1616' => 'acertr', 'Atru.chr4.2230' => 'acertr', 'Atru.chr4.2232' => 'acertr', 'Atru.chr5.1598' => 'acertr', 'Atru.chr5.1600' => 'acertr', 'Atru.chr5.2188' => 'acertr', 'AUR62008326' => 'cqu', 'AUR62011922' => 'cqu', 'AUR62011924' => 'cqu', 'AUR62021771' => 'cqu', 'AUR62032237' => 'cqu', 'AUR62032240' => 'cqu', 'BcaB01g05572' => 'bca', 'BcaB02g10337' => 'bca', 'BcaB04g19944' => 'bca', 'BcaB05g21548' => 'bca', 'BcaB05g21549' => 'bca', 'BcaB05g23227' => 'bca', 'BcaB06g26256' => 'bca', 'BcaB06g26257' => 'bca', 'BcaB06g28379' => 'bca', 'BcaC02g11159' => 'bca', 'BcaC03g13258' => 'bca', 'BcaC03g13259' => 'bca', 'BcaC05g24456' => 'bca', 'BcaC05g24457' => 'bca', 'BcaC07g36922' => 'bca', 'BcaC07g36923' => 'bca', 'BcaC07g42050' => 'bca', 'BcaC07g42176' => 'bca', 'BcaC07g42195' => 'bca', 'BcaC07g42196' => 'bca', 'BcaNung06674' => 'bca', 'BolC2t06351H' => 'bol', 'BolC2t06352H' => 'bol', 'BolC3t12993H' => 'bol', 'BolC4t23525H' => 'bol', 'BolC4t27475H' => 'bol', 'BolC5t29025H' => 'bol', 'BolC5t29026H' => 'bol', 'BolC8t46898H' => 'bol', 'BolC8t46899H' => 'bol', 'BolC8t52630H' => 'bol', 'BolC8t52765H' => 'bol', 'BolC9t53824H' => 'bol', 'BraA03t09760Z' => 'bra', 'BraA03t10990Z' => 'bra', 'BraA05t20413Z' => 'bra', 'BraA08t35602Z' => 'bra', 'BraA09t36458Z' => 'bra', 'BraA09t42018Z' => 'bra', 'BraA09t42129Z' => 'bra', 'BraA10t42536Z' => 'bra', 'BraA10t42537Z' => 'bra', 'C01p10690' => 'bna', 'C02p03890' => 'bna', 'C02p03900' => 'bna', 'C03p04620' => 'bna', 'C04p19870' => 'bna', 'C04p59670' => 'bna', 'C05p02460' => 'bna', 'C05p02470' => 'bna', 'C08p00980' => 'bna', 'C08p00990' => 'bna', 'C08p51030' => 'bna', 'C08p52360' => 'bna', 'C09p09120' => 'bna', 'CAN.G19.15' => 'can', 'CAN.G251.10' => 'can', 'CAN.G251.9' => 'can', 'CAN.G398.24' => 'can', 'CAN.G410.32' => 'can', 'CAN.G881.2' => 'can', 'CANSAT01G3025' => 'cansat', 'CANSAT78G1211' => 'cansat', 'CANSAT78G1218' => 'cansat', 'CANSAT78G1521' => 'cansat', 'CANSAT78G1670' => 'cansat', 'CARHR003600' => 'chi', 'CARHR003610' => 'chi', 'CARHR006290' => 'chi', 'CARHR006430' => 'chi', 'CARHR124110' => 'chi', 'CARHR203870' => 'chi', 'CARHR203880' => 'chi', 'CARHR203890' => 'chi', 'CARHR276880' => 'chi', 'Carub.0001s0346' => 'cru', 'Carub.0001s0347' => 'cru', 'Carub.0001s0607' => 'cru', 'Carub.0003s2768' => 'cru', 'Carub.0003s2769' => 'cru', 'Carub.0004s1178' => 'cru', 'Carub.0006s0806' => 'cru', 'Carub.0006s0807' => 'cru', 'Carub.0006s0808' => 'cru', 'Carub.0008s0501' => 'cru', 'Carub.0008s2379' => 'cru', 'Ca_08655_v3' => 'car', 'Ca_08922_v3' => 'car', 'Ca_08923_v3' => 'car', 'Ca_09119_v3' => 'car', 'Ca_09703_v3' => 'car', 'Ca_09705_v3' => 'car', 'Ca_09835_v3' => 'car', 'Ca_26403_v3' => 'car', 'Ca_30719_v3' => 'car', 'CBR_g17958' => 'cbr', 'CBR_g40516' => 'cbr', 'Cc00_g05350' => 'ccan', 'Cc01_g18690' => 'ccan', 'Cc03_g04830' => 'ccan', 'Cc03_g04850' => 'ccan', 'CDE02G4469' => 'cde', 'CDE06G0883' => 'cde', 'CDE06G1295' => 'cde', 'CDE06G1390' => 'cde', 'CDE07G0584' => 'cde', 'CDE07G1084' => 'cde', 'CDE08G1259' => 'cde', 'Cfa002341' => 'cfa', 'Cfa024337' => 'cfa', 'Ciclev10004749m.g' => 'ccl', 'Ciclev10006127m.g' => 'ccl', 'Ciclev10019720m.g' => 'ccl', 'Ciclev10022652m.g' => 'ccl', 'CiPaw.01G190400' => 'cil', 'CiPaw.01G190500' => 'cil', 'CiPaw.02G116400' => 'cil', 'CiPaw.02G116500' => 'cil', 'CiPaw.04G183000' => 'cil', 'CiPaw.04G183300' => 'cil', 'ClCG05G004610' => 'cla', 'ClCG05G004620' => 'cla', 'ClCG06G006730' => 'cla', 'ClCG06G006740' => 'cla', 'ClCG11G003690' => 'cla', 'COL.COLO4_08276' => 'col', 'COL.COLO4_08277' => 'col', 'COL.COLO4_15787' => 'col', 'COL.COLO4_15789' => 'col', 'Cpa.g.c44815' => 'cpa', 'Cpa.g.sc52.144' => 'cpa', 'Cpa.g.sc58.46' => 'cpa', 'Cpa.g.sc58.47' => 'cpa', 'Cre08.g360900' => 'cre', 'CsaV3_2G013030' => 'csa', 'CsaV3_2G013050' => 'csa', 'CsaV3_2G015620' => 'csa', 'CsaV3_3G012590' => 'csa', 'CsaV3_3G012600' => 'csa', 'CSS0001641' => 'camsi', 'CSS0008310' => 'camsi', 'CSS0013011' => 'camsi', 'CSS0017147' => 'camsi', 'CSS0022970' => 'camsi', 'CSS0025655' => 'camsi', 'CSS0028665' => 'camsi', 'CSS0029117' => 'camsi', 'CSS0032024' => 'camsi', 'CSS0039681' => 'camsi', 'CSS0046516' => 'camsi', 'CSS0050307' => 'camsi', 'DCAR_005871' => 'dca', 'DCAR_007342' => 'dca', 'DCAR_024228' => 'dca', 'DCAR_027277' => 'dca', 'DCAR_030718' => 'dca', 'Dinv20287' => 'din', 'Dinv22461' => 'din', 'Dinv22464' => 'din', 'Dinv29912' => 'din', 'Dinv29913' => 'din', 'Dinv34580' => 'din', 'Dinv34582' => 'din', 'Dinv44632' => 'din', 'Duzib052G0266' => 'dzi', 'Duzib133G0907' => 'dzi', 'Duzib133G1034' => 'dzi', 'Duzib138G0207' => 'dzi', 'Duzib138G0491' => 'dzi', 'Duzib151G0812' => 'dzi', 'Duzib151G1166' => 'dzi', 'Duzib168G0192' => 'dzi', 'Duzib211G0077' => 'dzi', 'Duzib212G0429' => 'dzi', 'Duzib212G0472' => 'dzi', 'ECA233G2617' => 'eca', 'ECA236G4188' => 'eca', 'ECA240G0936' => 'eca', 'ECA240G1129' => 'eca', 'ECA247G0623' => 'eca', 'EL10Ac5g10451' => 'bvu', 'EL10Ac5g10453' => 'bvu', 'EL10Ac5g10894' => 'bvu', 'Eucgr.H00192' => 'egr', 'Eucgr.H00193' => 'egr', 'Eucgr.H00194' => 'egr', 'Eucgr.J01562' => 'egr', 'Eucgr.K03301' => 'egr', 'FAN02G0632' => 'fan', 'FAN05G5378' => 'fan', 'FAN09G3247' => 'fan', 'FAN12G0435' => 'fan', 'FAN12G2426' => 'fan', 'FAN14G1707' => 'fan', 'FAN14G4725' => 'fan', 'FAN15G2071' => 'fan', 'FAN17G3065' => 'fan', 'FAN19G1376' => 'fan', 'FAN20G0354' => 'fan', 'FAN20G2429' => 'fan', 'FAN20G2658' => 'fan', 'FAN24G2343' => 'fan', 'FAN27G2362' => 'fan', 'FAN28G1765' => 'fan', 'FvH4_1g16020' => 'fve', 'FvH4_2g04890' => 'fve', 'FvH4_2g22270' => 'fve', 'FvH4_4g02630' => 'fve', 'FvH4_4g02640' => 'fve', 'FvH4_6g02650' => 'fve', 'Glyma.02G140600' => 'gma', 'Glyma.03G159900' => 'gma', 'Glyma.05G234800' => 'gma', 'Glyma.07G269600' => 'gma', 'Glyma.08G042300' => 'gma', 'Glyma.10G033500' => 'gma', 'Glyma.10G185200' => 'gma', 'Glyma.17G004300' => 'gma', 'Glyma.19G161900' => 'gma', 'Glyma.20G205100' => 'gma', 'Glyma.20G205200' => 'gma', 'Gohir.A01G139101' => 'ghi', 'Gohir.A02G035600' => 'ghi', 'Gohir.A02G117901' => 'ghi', 'Gohir.A07G210100' => 'ghi', 'Gohir.A07G210200' => 'ghi', 'Gohir.A08G061100' => 'ghi', 'Gohir.A09G223000' => 'ghi', 'Gohir.A09G223100' => 'ghi', 'Gohir.A10G113900' => 'ghi', 'Gohir.A10G114000' => 'ghi', 'Gohir.D02G042300' => 'ghi', 'Gohir.D07G216100' => 'ghi', 'Gohir.D07G216200' => 'ghi', 'Gohir.D08G070400' => 'ghi', 'Gohir.D09G225000' => 'ghi', 'Gohir.D09G225100' => 'ghi', 'Gohir.D10G152300' => 'ghi', 'Gohir.D10G153200' => 'ghi', 'Gohir.D11G133701' => 'ghi', 'Gorai.004G074100' => 'gra', 'Gorai.005G046800' => 'gra', 'Gorai.006G246500' => 'gra', 'Gorai.006G246600' => 'gra', 'Gorai.007G142900' => 'gra', 'Gorai.011G171000' => 'gra', 'Gorai.011G171100' => 'gra', 'Gorai.013G104300' => 'gra', 'Gorai.013G104400' => 'gra', 'GSVIVG01000754001' => 'vvi', 'GSVIVG01000756001' => 'vvi', 'GSVIVG01010903001' => 'vvi', 'GSVIVG01017623001' => 'vvi', 'GSVIVG01018113001' => 'vvi', 'GSVIVG01018116001' => 'vvi', 'GSVIVG01018118001' => 'vvi', 'HanXRQChr03g0076211' => 'han', 'HanXRQChr03g0092431' => 'han', 'HanXRQChr03g0092441' => 'han', 'HanXRQChr03g0092591' => 'han', 'HanXRQChr03g0092671' => 'han', 'HanXRQChr03g0092681' => 'han', 'HanXRQChr03g0092691' => 'han', 'HanXRQChr03g0092701' => 'han', 'HanXRQChr03g0092721' => 'han', 'HanXRQChr03g0092731' => 'han', 'HanXRQChr04g0113681' => 'han', 'HanXRQChr10g0281371' => 'han', 'HanXRQChr11g0337141' => 'han', 'HanXRQChr13g0424521' => 'han', 'HanXRQChr13g0424531' => 'han', 'HanXRQChr13g0424541' => 'han', 'HanXRQChr16g0498221' => 'han', 'Haze_04377' => 'cav', 'Haze_11298' => 'cav', 'Haze_24547' => 'cav', 'Haze_24550' => 'cav', 'Haze_26587' => 'cav', 'Hma1.2p1_0650F.1_g195410' => 'hma', 'Hma1.2p1_0893F.1_g233470' => 'hma', 'HPP92_006508' => 'vpl', 'HPP92_024780' => 'vpl', 'Hund02688' => 'sun', 'Hund09380' => 'sun', 'Hund09381' => 'sun', 'Hund09832' => 'sun', 'Hund09833' => 'sun', 'Hund11351' => 'sun', 'Hund11513' => 'sun', 'Lalb_Chr06g0162591' => 'lal', 'Lalb_Chr06g0162601' => 'lal', 'Lalb_Chr06g0169321' => 'lal', 'Lalb_Chr09g0330951' => 'lal', 'Lalb_Chr16g0387631' => 'lal', 'Lalb_Chr21g0306241' => 'lal', 'Lalb_Chr25g0290051' => 'lal', 'Lalb_Chr25g0290061' => 'lal', 'Lalb_Chr25g0290071' => 'lal', 'Lj1g0003876' => 'lja', 'Lj1P1207T36' => 'lonja', 'Lj2C1156G12' => 'lonja', 'Lj3A793G39' => 'lonja', 'Lj3C580G2' => 'lonja', 'Lj3C780G2' => 'lonja', 'Lj3C780T4' => 'lonja', 'Lj3C793G9' => 'lonja', 'Lj4g0012960' => 'lja', 'Lj5g0021252' => 'lja', 'Lj5g0021484' => 'lja', 'Lj5g0024528' => 'lja', 'Lj6A399T12' => 'lonja', 'Lj6A656G65' => 'lonja', 'Lsat_1_v5_gn_3_125500' => 'lsa', 'Lsat_1_v5_gn_3_125540' => 'lsa', 'Lsat_1_v5_gn_5_72701' => 'lsa', 'Lsat_1_v5_gn_8_91560' => 'lsa', 'Lsat_1_v5_gn_9_9640' => 'lsa', 'Manes.01G200600' => 'mes', 'Manes.01G200700' => 'mes', 'Manes.03G168900' => 'mes', 'Manes.03G169000' => 'mes', 'Manes.05G085801' => 'mes', 'Manes.05G086200' => 'mes', 'Manes.15G036700' => 'mes', 'Manes.15G036900' => 'mes', 'Mapoly0004s0172' => 'mpo', 'Mapoly0023s0001' => 'mpo', 'Mapoly0142s0012' => 'mpo', 'MBI01_g32854_MAGBIO' => 'mbi', 'MBI11_g24427_MAGBIO' => 'mbi', 'MBI11_g47319_MAGBIO' => 'mbi', 'MCO01G433' => 'mco', 'MD00G1187800' => 'mdo', 'MD04G1226500' => 'mdo', 'MD05G1203900' => 'mdo', 'MD10G1191100' => 'mdo', 'MD12G1243500' => 'mdo', 'MD13G1207000' => 'mdo', 'MD13G1207100' => 'mdo', 'MD16G1208600' => 'mdo', 'Medtr1g050352' => 'mtr', 'Medtr1g070385' => 'mtr', 'Medtr1g070450' => 'mtr', 'Medtr1g075200' => 'mtr', 'Medtr1g075250' => 'mtr', 'Medtr1g075260' => 'mtr', 'Medtr1g475250' => 'mtr', 'Medtr4g075450' => 'mtr', 'Medtr7g096300' => 'mtr', 'Medtr8g105110' => 'mtr', 'MELO3C006470.2' => 'cme', 'MELO3C006471.2' => 'cme', 'MELO3C020772.2' => 'cme', 'MELO3C026780.2' => 'cme', 'MELO3C026781.2' => 'cme', 'Migut.D00390' => 'egut', 'Migut.G00435' => 'egut', 'Migut.G00436' => 'egut', 'Migut.G00718' => 'egut', 'MSTRG.21891' => 'ama', 'MSTRG.26910' => 'ama', 'MSTRG.4099' => 'ama', 'MSTRG.9925' => 'ama', 'Nitab4.5_0000165g0010' => 'nta', 'Nitab4.5_0000209g0180' => 'nta', 'Nitab4.5_0000244g0440' => 'nta', 'Nitab4.5_0000525g0220' => 'nta', 'Nitab4.5_0001597g0020' => 'nta', 'Nitab4.5_0001878g0040' => 'nta', 'Nitab4.5_0001878g0060' => 'nta', 'Nitab4.5_0002838g0100' => 'nta', 'Nitab4.5_0002838g0120' => 'nta', 'Nitab4.5_0004798g0030' => 'nta', 'Nitab4.5_0005420g0010' => 'nta', 'Nitab4.5_0005507g0010' => 'nta', 'Nitab4.5_0005574g0020' => 'nta', 'Nitab4.5_0005838g0010' => 'nta', 'Nitab4.5_0010580g0020' => 'nta', 'Nn1g02599' => 'nnu', 'Nn1g02608' => 'nnu', 'Nn3g17742' => 'nnu', 'Nn3g19534' => 'nnu', 'Nn3g19535' => 'nnu', 'Oeu008790.1' => 'oeu', 'Oeu008792.1' => 'oeu', 'Oeu032590.1' => 'oeu', 'Oeu035349.1' => 'oeu', 'Oeu049791.1' => 'oeu', 'Os01g0774500' => 'osa', 'Os03g0628800' => 'osa', 'Os03g0798600' => 'osa', 'Os05g0508800' => 'osa', 'Peaxi162Scf00036g02018' => 'pax', 'Peaxi162Scf00578g00032' => 'pax', 'Peaxi162Scf00578g00317' => 'pax', 'Peaxi162Scf00785g00114' => 'pax', 'Peaxi162Scf00813g00119' => 'pax', 'Peaxi162Scf00906g00227' => 'pax', 'PGR004G0875' => 'pgr', 'PGR004G2424' => 'pgr', 'PGR031G1239' => 'pgr', 'PGR031G2474' => 'pgr', 'PGR044G0423' => 'pgr', 'PGSC0003DMG400001128' => 'stu', 'PGSC0003DMG400007336' => 'stu', 'PGSC0003DMG400016318' => 'stu', 'PGSC0003DMG400016319' => 'stu', 'PGSC0003DMG400018074' => 'stu', 'Phvul.001G157700' => 'pvu', 'Phvul.002G148550' => 'pvu', 'Phvul.002G320200' => 'pvu', 'Phvul.003G089200' => 'pvu', 'Phvul.007G126000' => 'pvu', 'Phvul.007G126100' => 'pvu', 'Phvul.007G178000' => 'pvu', 'Phvul.007G178200' => 'pvu', 'Potri.002G043000' => 'ptr', 'Potri.002G043200' => 'ptr', 'Potri.003G123750' => 'ptr', 'Potri.005G055401' => 'ptr', 'Potri.005G219700' => 'ptr', 'Potri.005G220000' => 'ptr', 'Potri.008G161901' => 'ptr', 'Potri.008G162000' => 'ptr', 'Potri.008G162400' => 'ptr', 'Potri.010G076900' => 'ptr', 'Pp3c12_9180' => 'ppa', 'Pp3c13_19770' => 'ppa', 'Pp3c14_22950' => 'ppa', 'Pp3c16_12160' => 'ppa', 'Pp3c27_7820' => 'ppa', 'Pp3c2_3490' => 'ppa', 'Pp3c3_23700' => 'ppa', 'Pp3c3_36520' => 'ppa', 'Pp3c4_15250' => 'ppa', 'PRCOL_00007002' => 'pco', 'Prupe.1G030600' => 'ppe', 'Prupe.1G030700' => 'ppe', 'Prupe.6G345200' => 'ppe', 'Prupe.8G230300' => 'ppe', 'Prupe.8G230500' => 'ppe', 'Psat3g059600' => 'psa', 'Psat5g200920' => 'psa', 'Psat6g056440' => 'psa', 'Psat6g057360' => 'psa', 'Psat6g134120' => 'psa', 'Psat6g134160' => 'psa', 'Psat7g008640' => 'psa', 'Psat7g185240' => 'psa', 'PSO017G1330' => 'pso', 'PSO063G6097' => 'pso', 'PSO170G0835' => 'pso', 'PSO170G2499' => 'pso', 'PSO210G5058' => 'pso', 'PSO210G6154' => 'pso', 'PSO585G0031' => 'pso', 'PSO832G0264' => 'pso', 'PSO832G4288' => 'pso', 'QL03p027355' => 'qlo', 'QL03p027430' => 'qlo', 'QL04p081380' => 'qlo', 'QL06p015642' => 'qlo', 'QL06p015650' => 'qlo', 'QL06p015686' => 'qlo', 'QL12p042927' => 'qlo', 'QL93p1863_0035' => 'qlo', 'RcHm_v2.0_Chr3g0450581' => 'rch', 'RcHm_v2.0_Chr4g0390371' => 'rch', 'RcHm_v2.0_Chr4g0390381' => 'rch', 'RcHm_v2.0_Chr4g0390491' => 'rch', 'RcHm_v2.0_Chr4g0390501' => 'rch', 'RcHm_v2.0_Chr6g0289231' => 'rch', 'Rhsim04G0190400' => 'rsi', 'Rhsim04G0190500' => 'rsi', 'Rhsim04G0190600' => 'rsi', 'Rhsim13G0031400' => 'rsi', 'Rhsim13G0165600' => 'rsi', 'RhsimUnG0114600' => 'rsi', 'RhsimUnG0114700' => 'rsi', 'Sabra02G0034800' => 'sbr', 'Sabra02G0035100' => 'sbr', 'Sabra05G0168600' => 'sbr', 'Sabra05G0168800' => 'sbr', 'Sabra08G0123700' => 'sbr', 'Sabra10G0031900' => 'sbr', 'Sabra13G0039000' => 'sbr', 'SalBow2G0782' => 'sbo', 'SalBow2G1403' => 'sbo', 'SalBow4G0074' => 'sbo', 'SalBow4G2635' => 'sbo', 'SalBow5G3010' => 'sbo', 'Sc05g0000870' => 'sci', 'Sc05g0000890' => 'sci', 'Sc13g0005000' => 'sci', 'Sc13g0005030' => 'sci', 'Sc19g0003790' => 'sci', 'Sc19g0003800' => 'sci', 'Sed0003467' => 'sed', 'Sed0009355' => 'sed', 'Sed0009894' => 'sed', 'Sed0011972' => 'sed', 'Sed0021483' => 'sed', 'Sed0021750' => 'sed', 'Sed0026279' => 'sed', 'SEGI_05312' => 'sgi', 'SEGI_10112' => 'sgi', 'SEGI_15835' => 'sgi', 'SEGI_30386' => 'sgi', 'SEGI_34122' => 'sgi', 'SEGI_35063' => 'sgi', 'SGA_v2.0_scaffold101G29794' => 'sas', 'SGA_v2.0_scaffold1G00573' => 'sas', 'SGA_v2.0_scaffold79G25637' => 'sas', 'SGA_v2.0_scaffold88G27283' => 'sas', 'SGA_v2.0_scaffold88G27285' => 'sas', 'SGA_v2.0_scaffold88G27331' => 'sas', 'SHI09937' => 'shi', 'SMO119G0302' => 'smo', 'SMO137G0231' => 'smo', 'SMO367G1151' => 'smo', 'Solyc02g082000.3' => 'sly', 'Solyc06g031670.3' => 'sly', 'Solyc06g053810.3' => 'sly', 'Solyc07g025457.1' => 'sly', 'Solyc08g059740.1' => 'sly', 'Solyc08g059750.3' => 'sly', 'Solyc09g083370.3' => 'sly', 'Solyc12g038950.3' => 'sly', 'Sopen02g026630' => 'spe', 'Sopen06g018930' => 'spe', 'Sopen06g018940' => 'spe', 'Sopen08g009460' => 'spe', 'Sopen09g032290' => 'spe', 'Sp1g03080' => 'spa', 'Sp1g03090' => 'spa', 'Sp1g05480' => 'spa', 'Sp2g07860' => 'spa', 'Sp2g08430' => 'spa', 'Sp2g08440' => 'spa', 'Sp2g26200' => 'spa', 'Sp4g13170' => 'spa', 'Sp6g33840' => 'spa', 'SpUn1204_0010' => 'spa', 'TAR365G0908' => 'tar', 'TAR381G1270' => 'tar', 'TAR381G1651' => 'tar', 'TAR625G1131' => 'tar', 'TAR633G0962' => 'tar', 'TAR633G1729' => 'tar', 'TAR633G1864' => 'tar', 'TAR636G0221' => 'tar', 'TAR636G0314' => 'tar', 'TAR636G3202' => 'tar', 'THA.LOC104800805' => 'tha', 'THA.LOC104801096' => 'tha', 'THA.LOC104801555' => 'tha', 'THA.LOC104808491' => 'tha', 'THA.LOC104808595' => 'tha', 'THA.LOC104815985' => 'tha', 'THA.LOC104822250' => 'tha', 'THA.LOC104826071' => 'tha', 'Thecc.01G265200' => 'tca', 'Thecc.01G265300' => 'tca', 'Thecc.01G265700' => 'tca', 'Thecc.03G109100' => 'tca', 'Thecc.04G245900' => 'tca', 'Thecc.04G246000' => 'tca', 'Thhalv10003334m.g' => 'esa', 'Thhalv10005508m.g' => 'esa', 'Thhalv10005643m.g' => 'esa', 'Thhalv10007316m.g' => 'esa', 'Thhalv10009006m.g' => 'esa', 'Thhalv10009309m.g' => 'esa', 'Thhalv10014917m.g' => 'esa', 'Thhalv10014919m.g' => 'esa', 'Thhalv10015393m.g' => 'esa', 'Thhalv10016515m.g' => 'esa', 'Thhalv10029242m.g' => 'esa', 'TPR.G16654' => 'tpr', 'TPR.G20589' => 'tpr', 'TPR.G23029' => 'tpr', 'TPR.G27731' => 'tpr', 'TPR.G28889' => 'tpr', 'TPR.G28899' => 'tpr', 'TPR.G30846' => 'tpr', 'TPR.G5452' => 'tpr', 'TPR.G5713' => 'tpr', 'TPR.G9046' => 'tpr', 'TPR.G9061' => 'tpr', 'TWI09G1075' => 'twi', 'TWI12G0806' => 'twi', 'TWI18G0108' => 'twi', 'TWI53G1361' => 'twi', 'TWI73G0185' => 'twi', 'TWI73G0427' => 'twi', 'unitig_37.g12001' => 'ugi', 'unitig_747.g21660' => 'ugi', 'unitig_748.g7232' => 'ugi', 'unitig_748.g7315' => 'ugi', 'unitig_85.g27262' => 'ugi', 'unitig_92.g28220' => 'ugi', 'vmacro02632' => 'vma', 'vmacro08410' => 'vma', 'vmacro08411' => 'vma', 'vmacro15407' => 'vma', 'VMungo0251G3619' => 'vmu', 'VMungo0720G1204' => 'vmu', 'VMungo0720G1918' => 'vmu', 'VMungo0720G2387' => 'vmu', 'VMungo0720G2961' => 'vmu', 'VMungo1215G2154' => 'vmu', 'VMungo1383G2411' => 'vmu', 'Zm00001eb051130' => 'zma', 'Zm00001eb116830' => 'zma', 'Zm00001eb116850' => 'zma', 'Zm00001eb151740' => 'zma', 'Zm00001eb292360' => 'zma', 'Zm00001eb301640' => 'zma' ), 'gf_id' => 'HOM05D000856', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000856' ), 'data_identifier' => 'HOM05D000856', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000856', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p00010' => 'bna', 'A03p04160' => 'bna', 'A03p17160' => 'bna', 'A04p23370' => 'bna', 'A05p14860' => 'bna', 'A08p37020' => 'bna', 'A09p08050' => 'bna', 'A09p66800' => 'bna', 'A09p67940' => 'bna', 'A10p02680' => 'bna', 'A10p05320' => 'bna', 'Aa31LG1G20560' => 'aar', 'Aa31LG1G20610' => 'aar', 'Aa31LG1G7810' => 'aar', 'Aa31LG5G3590' => 'aar', 'Aa31LG5G6140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3819' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4683' => 'aag', 'Actinidia04480' => 'ach', 'Actinidia05466' => 'ach', 'Actinidia08445' => 'ach', 'Actinidia21170' => 'ach', 'Actinidia24812' => 'ach', 'Actinidia24951' => 'ach', 'Actinidia40088' => 'ach', 'Ah.02g111660' => 'amhyb', 'Ah.11g048900' => 'amhyb', 'Ah.11g049910' => 'amhyb', 'AL1G13870' => 'aly', 'AL1G13880' => 'aly', 'AL1G16760' => 'aly', 'AL390U10020' => 'aly', 'AL4G25520' => 'aly', 'AL6G19890' => 'aly', 'AL6G19900' => 'aly', 'AL6G19910' => 'aly', 'AL8G40100' => 'aly', 'Aqoxy2G03562' => 'aox', 'Aqoxy5G00316' => 'aox', 'Aqoxy5G00926' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1628KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1H403S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2FU6SJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.882I6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8YRY2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YN1SN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AF70II' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZA8L1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F916KL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHRD8H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KTZ8QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S22EMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8M29T' => 'arhy', 'AT1G04270' => 'ath', 'AT1G04280' => 'ath', 'AT1G06750' => 'ath', 'AT1G33850' => 'ath', 'AT2G30630' => 'ath', 'AT5G09490' => 'ath', 'AT5G09500' => 'ath', 'AT5G09510' => 'ath', 'AT5G43640' => 'ath', 'AT5G63070' => 'ath', 'ATR0605G315' => 'atr', 'Atru.chr11.175' => 'acertr', 'Atru.chr11.653' => 'acertr', 'Atru.chr3.1616' => 'acertr', 'Atru.chr4.2230' => 'acertr', 'Atru.chr4.2232' => 'acertr', 'Atru.chr5.1598' => 'acertr', 'Atru.chr5.1600' => 'acertr', 'Atru.chr5.2188' => 'acertr', 'AUR62008326' => 'cqu', 'AUR62011922' => 'cqu', 'AUR62011924' => 'cqu', 'AUR62021771' => 'cqu', 'AUR62032237' => 'cqu', 'AUR62032240' => 'cqu', 'BcaB01g05572' => 'bca', 'BcaB02g10337' => 'bca', 'BcaB04g19944' => 'bca', 'BcaB05g21548' => 'bca', 'BcaB05g21549' => 'bca', 'BcaB05g23227' => 'bca', 'BcaB06g26256' => 'bca', 'BcaB06g26257' => 'bca', 'BcaB06g28379' => 'bca', 'BcaC02g11159' => 'bca', 'BcaC03g13258' => 'bca', 'BcaC03g13259' => 'bca', 'BcaC05g24456' => 'bca', 'BcaC05g24457' => 'bca', 'BcaC07g36922' => 'bca', 'BcaC07g36923' => 'bca', 'BcaC07g42050' => 'bca', 'BcaC07g42176' => 'bca', 'BcaC07g42195' => 'bca', 'BcaC07g42196' => 'bca', 'BcaNung06674' => 'bca', 'BolC2t06351H' => 'bol', 'BolC2t06352H' => 'bol', 'BolC3t12993H' => 'bol', 'BolC4t23525H' => 'bol', 'BolC4t27475H' => 'bol', 'BolC5t29025H' => 'bol', 'BolC5t29026H' => 'bol', 'BolC8t46898H' => 'bol', 'BolC8t46899H' => 'bol', 'BolC8t52630H' => 'bol', 'BolC8t52765H' => 'bol', 'BolC9t53824H' => 'bol', 'BraA03t09760Z' => 'bra', 'BraA03t10990Z' => 'bra', 'BraA05t20413Z' => 'bra', 'BraA08t35602Z' => 'bra', 'BraA09t36458Z' => 'bra', 'BraA09t42018Z' => 'bra', 'BraA09t42129Z' => 'bra', 'BraA10t42536Z' => 'bra', 'BraA10t42537Z' => 'bra', 'C01p10690' => 'bna', 'C02p03890' => 'bna', 'C02p03900' => 'bna', 'C03p04620' => 'bna', 'C04p19870' => 'bna', 'C04p59670' => 'bna', 'C05p02460' => 'bna', 'C05p02470' => 'bna', 'C08p00980' => 'bna', 'C08p00990' => 'bna', 'C08p51030' => 'bna', 'C08p52360' => 'bna', 'C09p09120' => 'bna', 'CAN.G19.15' => 'can', 'CAN.G251.10' => 'can', 'CAN.G251.9' => 'can', 'CAN.G398.24' => 'can', 'CAN.G410.32' => 'can', 'CAN.G881.2' => 'can', 'CANSAT01G3025' => 'cansat', 'CANSAT78G1211' => 'cansat', 'CANSAT78G1218' => 'cansat', 'CANSAT78G1521' => 'cansat', 'CANSAT78G1670' => 'cansat', 'CARHR003600' => 'chi', 'CARHR003610' => 'chi', 'CARHR006290' => 'chi', 'CARHR006430' => 'chi', 'CARHR124110' => 'chi', 'CARHR203870' => 'chi', 'CARHR203880' => 'chi', 'CARHR203890' => 'chi', 'CARHR276880' => 'chi', 'Carub.0001s0346' => 'cru', 'Carub.0001s0347' => 'cru', 'Carub.0001s0607' => 'cru', 'Carub.0003s2768' => 'cru', 'Carub.0003s2769' => 'cru', 'Carub.0004s1178' => 'cru', 'Carub.0006s0806' => 'cru', 'Carub.0006s0807' => 'cru', 'Carub.0006s0808' => 'cru', 'Carub.0008s0501' => 'cru', 'Carub.0008s2379' => 'cru', 'Ca_08655_v3' => 'car', 'Ca_08922_v3' => 'car', 'Ca_08923_v3' => 'car', 'Ca_09119_v3' => 'car', 'Ca_09703_v3' => 'car', 'Ca_09705_v3' => 'car', 'Ca_09835_v3' => 'car', 'Ca_26403_v3' => 'car', 'Ca_30719_v3' => 'car', 'CBR_g17958' => 'cbr', 'CBR_g40516' => 'cbr', 'Cc00_g05350' => 'ccan', 'Cc01_g18690' => 'ccan', 'Cc03_g04830' => 'ccan', 'Cc03_g04850' => 'ccan', 'CDE02G4469' => 'cde', 'CDE06G0883' => 'cde', 'CDE06G1295' => 'cde', 'CDE06G1390' => 'cde', 'CDE07G0584' => 'cde', 'CDE07G1084' => 'cde', 'CDE08G1259' => 'cde', 'Cfa002341' => 'cfa', 'Cfa024337' => 'cfa', 'Ciclev10004749m.g' => 'ccl', 'Ciclev10006127m.g' => 'ccl', 'Ciclev10019720m.g' => 'ccl', 'Ciclev10022652m.g' => 'ccl', 'CiPaw.01G190400' => 'cil', 'CiPaw.01G190500' => 'cil', 'CiPaw.02G116400' => 'cil', 'CiPaw.02G116500' => 'cil', 'CiPaw.04G183000' => 'cil', 'CiPaw.04G183300' => 'cil', 'ClCG05G004610' => 'cla', 'ClCG05G004620' => 'cla', 'ClCG06G006730' => 'cla', 'ClCG06G006740' => 'cla', 'ClCG11G003690' => 'cla', 'COL.COLO4_08276' => 'col', 'COL.COLO4_08277' => 'col', 'COL.COLO4_15787' => 'col', 'COL.COLO4_15789' => 'col', 'Cpa.g.c44815' => 'cpa', 'Cpa.g.sc52.144' => 'cpa', 'Cpa.g.sc58.46' => 'cpa', 'Cpa.g.sc58.47' => 'cpa', 'Cre08.g360900' => 'cre', 'CsaV3_2G013030' => 'csa', 'CsaV3_2G013050' => 'csa', 'CsaV3_2G015620' => 'csa', 'CsaV3_3G012590' => 'csa', 'CsaV3_3G012600' => 'csa', 'CSS0001641' => 'camsi', 'CSS0008310' => 'camsi', 'CSS0013011' => 'camsi', 'CSS0017147' => 'camsi', 'CSS0022970' => 'camsi', 'CSS0025655' => 'camsi', 'CSS0028665' => 'camsi', 'CSS0029117' => 'camsi', 'CSS0032024' => 'camsi', 'CSS0039681' => 'camsi', 'CSS0046516' => 'camsi', 'CSS0050307' => 'camsi', 'DCAR_005871' => 'dca', 'DCAR_007342' => 'dca', 'DCAR_024228' => 'dca', 'DCAR_027277' => 'dca', 'DCAR_030718' => 'dca', 'Dinv20287' => 'din', 'Dinv22461' => 'din', 'Dinv22464' => 'din', 'Dinv29912' => 'din', 'Dinv29913' => 'din', 'Dinv34580' => 'din', 'Dinv34582' => 'din', 'Dinv44632' => 'din', 'Duzib052G0266' => 'dzi', 'Duzib133G0907' => 'dzi', 'Duzib133G1034' => 'dzi', 'Duzib138G0207' => 'dzi', 'Duzib138G0491' => 'dzi', 'Duzib151G0812' => 'dzi', 'Duzib151G1166' => 'dzi', 'Duzib168G0192' => 'dzi', 'Duzib211G0077' => 'dzi', 'Duzib212G0429' => 'dzi', 'Duzib212G0472' => 'dzi', 'ECA233G2617' => 'eca', 'ECA236G4188' => 'eca', 'ECA240G0936' => 'eca', 'ECA240G1129' => 'eca', 'ECA247G0623' => 'eca', 'EL10Ac5g10451' => 'bvu', 'EL10Ac5g10453' => 'bvu', 'EL10Ac5g10894' => 'bvu', 'Eucgr.H00192' => 'egr', 'Eucgr.H00193' => 'egr', 'Eucgr.H00194' => 'egr', 'Eucgr.J01562' => 'egr', 'Eucgr.K03301' => 'egr', 'FAN02G0632' => 'fan', 'FAN05G5378' => 'fan', 'FAN09G3247' => 'fan', 'FAN12G0435' => 'fan', 'FAN12G2426' => 'fan', 'FAN14G1707' => 'fan', 'FAN14G4725' => 'fan', 'FAN15G2071' => 'fan', 'FAN17G3065' => 'fan', 'FAN19G1376' => 'fan', 'FAN20G0354' => 'fan', 'FAN20G2429' => 'fan', 'FAN20G2658' => 'fan', 'FAN24G2343' => 'fan', 'FAN27G2362' => 'fan', 'FAN28G1765' => 'fan', 'FvH4_1g16020' => 'fve', 'FvH4_2g04890' => 'fve', 'FvH4_2g22270' => 'fve', 'FvH4_4g02630' => 'fve', 'FvH4_4g02640' => 'fve', 'FvH4_6g02650' => 'fve', 'Glyma.02G140600' => 'gma', 'Glyma.03G159900' => 'gma', 'Glyma.05G234800' => 'gma', 'Glyma.07G269600' => 'gma', 'Glyma.08G042300' => 'gma', 'Glyma.10G033500' => 'gma', 'Glyma.10G185200' => 'gma', 'Glyma.17G004300' => 'gma', 'Glyma.19G161900' => 'gma', 'Glyma.20G205100' => 'gma', 'Glyma.20G205200' => 'gma', 'Gohir.A01G139101' => 'ghi', 'Gohir.A02G035600' => 'ghi', 'Gohir.A02G117901' => 'ghi', 'Gohir.A07G210100' => 'ghi', 'Gohir.A07G210200' => 'ghi', 'Gohir.A08G061100' => 'ghi', 'Gohir.A09G223000' => 'ghi', 'Gohir.A09G223100' => 'ghi', 'Gohir.A10G113900' => 'ghi', 'Gohir.A10G114000' => 'ghi', 'Gohir.D02G042300' => 'ghi', 'Gohir.D07G216100' => 'ghi', 'Gohir.D07G216200' => 'ghi', 'Gohir.D08G070400' => 'ghi', 'Gohir.D09G225000' => 'ghi', 'Gohir.D09G225100' => 'ghi', 'Gohir.D10G152300' => 'ghi', 'Gohir.D10G153200' => 'ghi', 'Gohir.D11G133701' => 'ghi', 'Gorai.004G074100' => 'gra', 'Gorai.005G046800' => 'gra', 'Gorai.006G246500' => 'gra', 'Gorai.006G246600' => 'gra', 'Gorai.007G142900' => 'gra', 'Gorai.011G171000' => 'gra', 'Gorai.011G171100' => 'gra', 'Gorai.013G104300' => 'gra', 'Gorai.013G104400' => 'gra', 'GSVIVG01000754001' => 'vvi', 'GSVIVG01000756001' => 'vvi', 'GSVIVG01010903001' => 'vvi', 'GSVIVG01017623001' => 'vvi', 'GSVIVG01018113001' => 'vvi', 'GSVIVG01018116001' => 'vvi', 'GSVIVG01018118001' => 'vvi', 'HanXRQChr03g0076211' => 'han', 'HanXRQChr03g0092431' => 'han', 'HanXRQChr03g0092441' => 'han', 'HanXRQChr03g0092591' => 'han', 'HanXRQChr03g0092671' => 'han', 'HanXRQChr03g0092681' => 'han', 'HanXRQChr03g0092691' => 'han', 'HanXRQChr03g0092701' => 'han', 'HanXRQChr03g0092721' => 'han', 'HanXRQChr03g0092731' => 'han', 'HanXRQChr04g0113681' => 'han', 'HanXRQChr10g0281371' => 'han', 'HanXRQChr11g0337141' => 'han', 'HanXRQChr13g0424521' => 'han', 'HanXRQChr13g0424531' => 'han', 'HanXRQChr13g0424541' => 'han', 'HanXRQChr16g0498221' => 'han', 'Haze_04377' => 'cav', 'Haze_11298' => 'cav', 'Haze_24547' => 'cav', 'Haze_24550' => 'cav', 'Haze_26587' => 'cav', 'Hma1.2p1_0650F.1_g195410' => 'hma', 'Hma1.2p1_0893F.1_g233470' => 'hma', 'HPP92_006508' => 'vpl', 'HPP92_024780' => 'vpl', 'Hund02688' => 'sun', 'Hund09380' => 'sun', 'Hund09381' => 'sun', 'Hund09832' => 'sun', 'Hund09833' => 'sun', 'Hund11351' => 'sun', 'Hund11513' => 'sun', 'Lalb_Chr06g0162591' => 'lal', 'Lalb_Chr06g0162601' => 'lal', 'Lalb_Chr06g0169321' => 'lal', 'Lalb_Chr09g0330951' => 'lal', 'Lalb_Chr16g0387631' => 'lal', 'Lalb_Chr21g0306241' => 'lal', 'Lalb_Chr25g0290051' => 'lal', 'Lalb_Chr25g0290061' => 'lal', 'Lalb_Chr25g0290071' => 'lal', 'Lj1g0003876' => 'lja', 'Lj1P1207T36' => 'lonja', 'Lj2C1156G12' => 'lonja', 'Lj3A793G39' => 'lonja', 'Lj3C580G2' => 'lonja', 'Lj3C780G2' => 'lonja', 'Lj3C780T4' => 'lonja', 'Lj3C793G9' => 'lonja', 'Lj4g0012960' => 'lja', 'Lj5g0021252' => 'lja', 'Lj5g0021484' => 'lja', 'Lj5g0024528' => 'lja', 'Lj6A399T12' => 'lonja', 'Lj6A656G65' => 'lonja', 'Lsat_1_v5_gn_3_125500' => 'lsa', 'Lsat_1_v5_gn_3_125540' => 'lsa', 'Lsat_1_v5_gn_5_72701' => 'lsa', 'Lsat_1_v5_gn_8_91560' => 'lsa', 'Lsat_1_v5_gn_9_9640' => 'lsa', 'Manes.01G200600' => 'mes', 'Manes.01G200700' => 'mes', 'Manes.03G168900' => 'mes', 'Manes.03G169000' => 'mes', 'Manes.05G085801' => 'mes', 'Manes.05G086200' => 'mes', 'Manes.15G036700' => 'mes', 'Manes.15G036900' => 'mes', 'Mapoly0004s0172' => 'mpo', 'Mapoly0023s0001' => 'mpo', 'Mapoly0142s0012' => 'mpo', 'MBI01_g32854_MAGBIO' => 'mbi', 'MBI11_g24427_MAGBIO' => 'mbi', 'MBI11_g47319_MAGBIO' => 'mbi', 'MCO01G433' => 'mco', 'MD00G1187800' => 'mdo', 'MD04G1226500' => 'mdo', 'MD05G1203900' => 'mdo', 'MD10G1191100' => 'mdo', 'MD12G1243500' => 'mdo', 'MD13G1207000' => 'mdo', 'MD13G1207100' => 'mdo', 'MD16G1208600' => 'mdo', 'Medtr1g050352' => 'mtr', 'Medtr1g070385' => 'mtr', 'Medtr1g070450' => 'mtr', 'Medtr1g075200' => 'mtr', 'Medtr1g075250' => 'mtr', 'Medtr1g075260' => 'mtr', 'Medtr1g475250' => 'mtr', 'Medtr4g075450' => 'mtr', 'Medtr7g096300' => 'mtr', 'Medtr8g105110' => 'mtr', 'MELO3C006470.2' => 'cme', 'MELO3C006471.2' => 'cme', 'MELO3C020772.2' => 'cme', 'MELO3C026780.2' => 'cme', 'MELO3C026781.2' => 'cme', 'Migut.D00390' => 'egut', 'Migut.G00435' => 'egut', 'Migut.G00436' => 'egut', 'Migut.G00718' => 'egut', 'MSTRG.21891' => 'ama', 'MSTRG.26910' => 'ama', 'MSTRG.4099' => 'ama', 'MSTRG.9925' => 'ama', 'Nitab4.5_0000165g0010' => 'nta', 'Nitab4.5_0000209g0180' => 'nta', 'Nitab4.5_0000244g0440' => 'nta', 'Nitab4.5_0000525g0220' => 'nta', 'Nitab4.5_0001597g0020' => 'nta', 'Nitab4.5_0001878g0040' => 'nta', 'Nitab4.5_0001878g0060' => 'nta', 'Nitab4.5_0002838g0100' => 'nta', 'Nitab4.5_0002838g0120' => 'nta', 'Nitab4.5_0004798g0030' => 'nta', 'Nitab4.5_0005420g0010' => 'nta', 'Nitab4.5_0005507g0010' => 'nta', 'Nitab4.5_0005574g0020' => 'nta', 'Nitab4.5_0005838g0010' => 'nta', 'Nitab4.5_0010580g0020' => 'nta', 'Nn1g02599' => 'nnu', 'Nn1g02608' => 'nnu', 'Nn3g17742' => 'nnu', 'Nn3g19534' => 'nnu', 'Nn3g19535' => 'nnu', 'Oeu008790.1' => 'oeu', 'Oeu008792.1' => 'oeu', 'Oeu032590.1' => 'oeu', 'Oeu035349.1' => 'oeu', 'Oeu049791.1' => 'oeu', 'Os01g0774500' => 'osa', 'Os03g0628800' => 'osa', 'Os03g0798600' => 'osa', 'Os05g0508800' => 'osa', 'Peaxi162Scf00036g02018' => 'pax', 'Peaxi162Scf00578g00032' => 'pax', 'Peaxi162Scf00578g00317' => 'pax', 'Peaxi162Scf00785g00114' => 'pax', 'Peaxi162Scf00813g00119' => 'pax', 'Peaxi162Scf00906g00227' => 'pax', 'PGR004G0875' => 'pgr', 'PGR004G2424' => 'pgr', 'PGR031G1239' => 'pgr', 'PGR031G2474' => 'pgr', 'PGR044G0423' => 'pgr', 'PGSC0003DMG400001128' => 'stu', 'PGSC0003DMG400007336' => 'stu', 'PGSC0003DMG400016318' => 'stu', 'PGSC0003DMG400016319' => 'stu', 'PGSC0003DMG400018074' => 'stu', 'Phvul.001G157700' => 'pvu', 'Phvul.002G148550' => 'pvu', 'Phvul.002G320200' => 'pvu', 'Phvul.003G089200' => 'pvu', 'Phvul.007G126000' => 'pvu', 'Phvul.007G126100' => 'pvu', 'Phvul.007G178000' => 'pvu', 'Phvul.007G178200' => 'pvu', 'Potri.002G043000' => 'ptr', 'Potri.002G043200' => 'ptr', 'Potri.003G123750' => 'ptr', 'Potri.005G055401' => 'ptr', 'Potri.005G219700' => 'ptr', 'Potri.005G220000' => 'ptr', 'Potri.008G161901' => 'ptr', 'Potri.008G162000' => 'ptr', 'Potri.008G162400' => 'ptr', 'Potri.010G076900' => 'ptr', 'Pp3c12_9180' => 'ppa', 'Pp3c13_19770' => 'ppa', 'Pp3c14_22950' => 'ppa', 'Pp3c16_12160' => 'ppa', 'Pp3c27_7820' => 'ppa', 'Pp3c2_3490' => 'ppa', 'Pp3c3_23700' => 'ppa', 'Pp3c3_36520' => 'ppa', 'Pp3c4_15250' => 'ppa', 'PRCOL_00007002' => 'pco', 'Prupe.1G030600' => 'ppe', 'Prupe.1G030700' => 'ppe', 'Prupe.6G345200' => 'ppe', 'Prupe.8G230300' => 'ppe', 'Prupe.8G230500' => 'ppe', 'Psat3g059600' => 'psa', 'Psat5g200920' => 'psa', 'Psat6g056440' => 'psa', 'Psat6g057360' => 'psa', 'Psat6g134120' => 'psa', 'Psat6g134160' => 'psa', 'Psat7g008640' => 'psa', 'Psat7g185240' => 'psa', 'PSO017G1330' => 'pso', 'PSO063G6097' => 'pso', 'PSO170G0835' => 'pso', 'PSO170G2499' => 'pso', 'PSO210G5058' => 'pso', 'PSO210G6154' => 'pso', 'PSO585G0031' => 'pso', 'PSO832G0264' => 'pso', 'PSO832G4288' => 'pso', 'QL03p027355' => 'qlo', 'QL03p027430' => 'qlo', 'QL04p081380' => 'qlo', 'QL06p015642' => 'qlo', 'QL06p015650' => 'qlo', 'QL06p015686' => 'qlo', 'QL12p042927' => 'qlo', 'QL93p1863_0035' => 'qlo', 'RcHm_v2.0_Chr3g0450581' => 'rch', 'RcHm_v2.0_Chr4g0390371' => 'rch', 'RcHm_v2.0_Chr4g0390381' => 'rch', 'RcHm_v2.0_Chr4g0390491' => 'rch', 'RcHm_v2.0_Chr4g0390501' => 'rch', 'RcHm_v2.0_Chr6g0289231' => 'rch', 'Rhsim04G0190400' => 'rsi', 'Rhsim04G0190500' => 'rsi', 'Rhsim04G0190600' => 'rsi', 'Rhsim13G0031400' => 'rsi', 'Rhsim13G0165600' => 'rsi', 'RhsimUnG0114600' => 'rsi', 'RhsimUnG0114700' => 'rsi', 'Sabra02G0034800' => 'sbr', 'Sabra02G0035100' => 'sbr', 'Sabra05G0168600' => 'sbr', 'Sabra05G0168800' => 'sbr', 'Sabra08G0123700' => 'sbr', 'Sabra10G0031900' => 'sbr', 'Sabra13G0039000' => 'sbr', 'SalBow2G0782' => 'sbo', 'SalBow2G1403' => 'sbo', 'SalBow4G0074' => 'sbo', 'SalBow4G2635' => 'sbo', 'SalBow5G3010' => 'sbo', 'Sc05g0000870' => 'sci', 'Sc05g0000890' => 'sci', 'Sc13g0005000' => 'sci', 'Sc13g0005030' => 'sci', 'Sc19g0003790' => 'sci', 'Sc19g0003800' => 'sci', 'Sed0003467' => 'sed', 'Sed0009355' => 'sed', 'Sed0009894' => 'sed', 'Sed0011972' => 'sed', 'Sed0021483' => 'sed', 'Sed0021750' => 'sed', 'Sed0026279' => 'sed', 'SEGI_05312' => 'sgi', 'SEGI_10112' => 'sgi', 'SEGI_15835' => 'sgi', 'SEGI_30386' => 'sgi', 'SEGI_34122' => 'sgi', 'SEGI_35063' => 'sgi', 'SGA_v2.0_scaffold101G29794' => 'sas', 'SGA_v2.0_scaffold1G00573' => 'sas', 'SGA_v2.0_scaffold79G25637' => 'sas', 'SGA_v2.0_scaffold88G27283' => 'sas', 'SGA_v2.0_scaffold88G27285' => 'sas', 'SGA_v2.0_scaffold88G27331' => 'sas', 'SHI09937' => 'shi', 'SMO119G0302' => 'smo', 'SMO137G0231' => 'smo', 'SMO367G1151' => 'smo', 'Solyc02g082000.3' => 'sly', 'Solyc06g031670.3' => 'sly', 'Solyc06g053810.3' => 'sly', 'Solyc07g025457.1' => 'sly', 'Solyc08g059740.1' => 'sly', 'Solyc08g059750.3' => 'sly', 'Solyc09g083370.3' => 'sly', 'Solyc12g038950.3' => 'sly', 'Sopen02g026630' => 'spe', 'Sopen06g018930' => 'spe', 'Sopen06g018940' => 'spe', 'Sopen08g009460' => 'spe', 'Sopen09g032290' => 'spe', 'Sp1g03080' => 'spa', 'Sp1g03090' => 'spa', 'Sp1g05480' => 'spa', 'Sp2g07860' => 'spa', 'Sp2g08430' => 'spa', 'Sp2g08440' => 'spa', 'Sp2g26200' => 'spa', 'Sp4g13170' => 'spa', 'Sp6g33840' => 'spa', 'SpUn1204_0010' => 'spa', 'TAR365G0908' => 'tar', 'TAR381G1270' => 'tar', 'TAR381G1651' => 'tar', 'TAR625G1131' => 'tar', 'TAR633G0962' => 'tar', 'TAR633G1729' => 'tar', 'TAR633G1864' => 'tar', 'TAR636G0221' => 'tar', 'TAR636G0314' => 'tar', 'TAR636G3202' => 'tar', 'THA.LOC104800805' => 'tha', 'THA.LOC104801096' => 'tha', 'THA.LOC104801555' => 'tha', 'THA.LOC104808491' => 'tha', 'THA.LOC104808595' => 'tha', 'THA.LOC104815985' => 'tha', 'THA.LOC104822250' => 'tha', 'THA.LOC104826071' => 'tha', 'Thecc.01G265200' => 'tca', 'Thecc.01G265300' => 'tca', 'Thecc.01G265700' => 'tca', 'Thecc.03G109100' => 'tca', 'Thecc.04G245900' => 'tca', 'Thecc.04G246000' => 'tca', 'Thhalv10003334m.g' => 'esa', 'Thhalv10005508m.g' => 'esa', 'Thhalv10005643m.g' => 'esa', 'Thhalv10007316m.g' => 'esa', 'Thhalv10009006m.g' => 'esa', 'Thhalv10009309m.g' => 'esa', 'Thhalv10014917m.g' => 'esa', 'Thhalv10014919m.g' => 'esa', 'Thhalv10015393m.g' => 'esa', 'Thhalv10016515m.g' => 'esa', 'Thhalv10029242m.g' => 'esa', 'TPR.G16654' => 'tpr', 'TPR.G20589' => 'tpr', 'TPR.G23029' => 'tpr', 'TPR.G27731' => 'tpr', 'TPR.G28889' => 'tpr', 'TPR.G28899' => 'tpr', 'TPR.G30846' => 'tpr', 'TPR.G5452' => 'tpr', 'TPR.G5713' => 'tpr', 'TPR.G9046' => 'tpr', 'TPR.G9061' => 'tpr', 'TWI09G1075' => 'twi', 'TWI12G0806' => 'twi', 'TWI18G0108' => 'twi', 'TWI53G1361' => 'twi', 'TWI73G0185' => 'twi', 'TWI73G0427' => 'twi', 'unitig_37.g12001' => 'ugi', 'unitig_747.g21660' => 'ugi', 'unitig_748.g7232' => 'ugi', 'unitig_748.g7315' => 'ugi', 'unitig_85.g27262' => 'ugi', 'unitig_92.g28220' => 'ugi', 'vmacro02632' => 'vma', 'vmacro08410' => 'vma', 'vmacro08411' => 'vma', 'vmacro15407' => 'vma', 'VMungo0251G3619' => 'vmu', 'VMungo0720G1204' => 'vmu', 'VMungo0720G1918' => 'vmu', 'VMungo0720G2387' => 'vmu', 'VMungo0720G2961' => 'vmu', 'VMungo1215G2154' => 'vmu', 'VMungo1383G2411' => 'vmu', 'Zm00001eb051130' => 'zma', 'Zm00001eb116830' => 'zma', 'Zm00001eb116850' => 'zma', 'Zm00001eb151740' => 'zma', 'Zm00001eb292360' => 'zma', 'Zm00001eb301640' => 'zma' ) $gf_id = 'HOM05D000856' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000856' ) $data_identifier = 'HOM05D000856' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 13, 'ath' => (int) 10, 'atr' => (int) 1, 'acertr' => (int) 8, 'cqu' => (int) 6, 'bca' => (int) 21, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 11, 'car' => (int) 9, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 8, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 5, 'fan' => (int) 16, 'fve' => (int) 6, 'gma' => (int) 11, 'ghi' => (int) 19, 'gra' => (int) 9, 'vvi' => (int) 7, 'han' => (int) 17, 'cav' => (int) 5, 'hma' => (int) 2, 'vpl' => (int) 2, 'sun' => (int) 7, 'lal' => (int) 9, 'lja' => (int) 5, 'lonja' => (int) 9, 'lsa' => (int) 5, 'mes' => (int) 8, 'mpo' => (int) 3, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 10, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 15, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 9, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 9, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 6, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 5, 'spa' => (int) 10, 'tar' => (int) 10, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 11, 'tpr' => (int) 11, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 4, 'vmu' => (int) 7, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb301640' $species_info = array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ) $local_species = 'esa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000856', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p00010' => 'bna', 'A03p04160' => 'bna', 'A03p17160' => 'bna', 'A04p23370' => 'bna', 'A05p14860' => 'bna', 'A08p37020' => 'bna', 'A09p08050' => 'bna', 'A09p66800' => 'bna', 'A09p67940' => 'bna', 'A10p02680' => 'bna', 'A10p05320' => 'bna', 'Aa31LG1G20560' => 'aar', 'Aa31LG1G20610' => 'aar', 'Aa31LG1G7810' => 'aar', 'Aa31LG5G3590' => 'aar', 'Aa31LG5G6140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3819' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4683' => 'aag', 'Actinidia04480' => 'ach', 'Actinidia05466' => 'ach', 'Actinidia08445' => 'ach', 'Actinidia21170' => 'ach', 'Actinidia24812' => 'ach', 'Actinidia24951' => 'ach', 'Actinidia40088' => 'ach', 'Ah.02g111660' => 'amhyb', 'Ah.11g048900' => 'amhyb', 'Ah.11g049910' => 'amhyb', 'AL1G13870' => 'aly', 'AL1G13880' => 'aly', 'AL1G16760' => 'aly', 'AL390U10020' => 'aly', 'AL4G25520' => 'aly', 'AL6G19890' => 'aly', 'AL6G19900' => 'aly', 'AL6G19910' => 'aly', 'AL8G40100' => 'aly', 'Aqoxy2G03562' => 'aox', 'Aqoxy5G00316' => 'aox', 'Aqoxy5G00926' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1628KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1H403S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2FU6SJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.882I6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8YRY2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YN1SN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AF70II' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZA8L1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F916KL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHRD8H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KTZ8QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S22EMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8M29T' => 'arhy', 'AT1G04270' => 'ath', 'AT1G04280' => 'ath', 'AT1G06750' => 'ath', 'AT1G33850' => 'ath', 'AT2G30630' => 'ath', 'AT5G09490' => 'ath', 'AT5G09500' => 'ath', 'AT5G09510' => 'ath', 'AT5G43640' => 'ath', 'AT5G63070' => 'ath', 'ATR0605G315' => 'atr', 'Atru.chr11.175' => 'acertr', 'Atru.chr11.653' => 'acertr', 'Atru.chr3.1616' => 'acertr', 'Atru.chr4.2230' => 'acertr', 'Atru.chr4.2232' => 'acertr', 'Atru.chr5.1598' => 'acertr', 'Atru.chr5.1600' => 'acertr', 'Atru.chr5.2188' => 'acertr', 'AUR62008326' => 'cqu', 'AUR62011922' => 'cqu', 'AUR62011924' => 'cqu', 'AUR62021771' => 'cqu', 'AUR62032237' => 'cqu', 'AUR62032240' => 'cqu', 'BcaB01g05572' => 'bca', 'BcaB02g10337' => 'bca', 'BcaB04g19944' => 'bca', 'BcaB05g21548' => 'bca', 'BcaB05g21549' => 'bca', 'BcaB05g23227' => 'bca', 'BcaB06g26256' => 'bca', 'BcaB06g26257' => 'bca', 'BcaB06g28379' => 'bca', 'BcaC02g11159' => 'bca', 'BcaC03g13258' => 'bca', 'BcaC03g13259' => 'bca', 'BcaC05g24456' => 'bca', 'BcaC05g24457' => 'bca', 'BcaC07g36922' => 'bca', 'BcaC07g36923' => 'bca', 'BcaC07g42050' => 'bca', 'BcaC07g42176' => 'bca', 'BcaC07g42195' => 'bca', 'BcaC07g42196' => 'bca', 'BcaNung06674' => 'bca', 'BolC2t06351H' => 'bol', 'BolC2t06352H' => 'bol', 'BolC3t12993H' => 'bol', 'BolC4t23525H' => 'bol', 'BolC4t27475H' => 'bol', 'BolC5t29025H' => 'bol', 'BolC5t29026H' => 'bol', 'BolC8t46898H' => 'bol', 'BolC8t46899H' => 'bol', 'BolC8t52630H' => 'bol', 'BolC8t52765H' => 'bol', 'BolC9t53824H' => 'bol', 'BraA03t09760Z' => 'bra', 'BraA03t10990Z' => 'bra', 'BraA05t20413Z' => 'bra', 'BraA08t35602Z' => 'bra', 'BraA09t36458Z' => 'bra', 'BraA09t42018Z' => 'bra', 'BraA09t42129Z' => 'bra', 'BraA10t42536Z' => 'bra', 'BraA10t42537Z' => 'bra', 'C01p10690' => 'bna', 'C02p03890' => 'bna', 'C02p03900' => 'bna', 'C03p04620' => 'bna', 'C04p19870' => 'bna', 'C04p59670' => 'bna', 'C05p02460' => 'bna', 'C05p02470' => 'bna', 'C08p00980' => 'bna', 'C08p00990' => 'bna', 'C08p51030' => 'bna', 'C08p52360' => 'bna', 'C09p09120' => 'bna', 'CAN.G19.15' => 'can', 'CAN.G251.10' => 'can', 'CAN.G251.9' => 'can', 'CAN.G398.24' => 'can', 'CAN.G410.32' => 'can', 'CAN.G881.2' => 'can', 'CANSAT01G3025' => 'cansat', 'CANSAT78G1211' => 'cansat', 'CANSAT78G1218' => 'cansat', 'CANSAT78G1521' => 'cansat', 'CANSAT78G1670' => 'cansat', 'CARHR003600' => 'chi', 'CARHR003610' => 'chi', 'CARHR006290' => 'chi', 'CARHR006430' => 'chi', 'CARHR124110' => 'chi', 'CARHR203870' => 'chi', 'CARHR203880' => 'chi', 'CARHR203890' => 'chi', 'CARHR276880' => 'chi', 'Carub.0001s0346' => 'cru', 'Carub.0001s0347' => 'cru', 'Carub.0001s0607' => 'cru', 'Carub.0003s2768' => 'cru', 'Carub.0003s2769' => 'cru', 'Carub.0004s1178' => 'cru', 'Carub.0006s0806' => 'cru', 'Carub.0006s0807' => 'cru', 'Carub.0006s0808' => 'cru', 'Carub.0008s0501' => 'cru', 'Carub.0008s2379' => 'cru', 'Ca_08655_v3' => 'car', 'Ca_08922_v3' => 'car', 'Ca_08923_v3' => 'car', 'Ca_09119_v3' => 'car', 'Ca_09703_v3' => 'car', 'Ca_09705_v3' => 'car', 'Ca_09835_v3' => 'car', 'Ca_26403_v3' => 'car', 'Ca_30719_v3' => 'car', 'CBR_g17958' => 'cbr', 'CBR_g40516' => 'cbr', 'Cc00_g05350' => 'ccan', 'Cc01_g18690' => 'ccan', 'Cc03_g04830' => 'ccan', 'Cc03_g04850' => 'ccan', 'CDE02G4469' => 'cde', 'CDE06G0883' => 'cde', 'CDE06G1295' => 'cde', 'CDE06G1390' => 'cde', 'CDE07G0584' => 'cde', 'CDE07G1084' => 'cde', 'CDE08G1259' => 'cde', 'Cfa002341' => 'cfa', 'Cfa024337' => 'cfa', 'Ciclev10004749m.g' => 'ccl', 'Ciclev10006127m.g' => 'ccl', 'Ciclev10019720m.g' => 'ccl', 'Ciclev10022652m.g' => 'ccl', 'CiPaw.01G190400' => 'cil', 'CiPaw.01G190500' => 'cil', 'CiPaw.02G116400' => 'cil', 'CiPaw.02G116500' => 'cil', 'CiPaw.04G183000' => 'cil', 'CiPaw.04G183300' => 'cil', 'ClCG05G004610' => 'cla', 'ClCG05G004620' => 'cla', 'ClCG06G006730' => 'cla', 'ClCG06G006740' => 'cla', 'ClCG11G003690' => 'cla', 'COL.COLO4_08276' => 'col', 'COL.COLO4_08277' => 'col', 'COL.COLO4_15787' => 'col', 'COL.COLO4_15789' => 'col', 'Cpa.g.c44815' => 'cpa', 'Cpa.g.sc52.144' => 'cpa', 'Cpa.g.sc58.46' => 'cpa', 'Cpa.g.sc58.47' => 'cpa', 'Cre08.g360900' => 'cre', 'CsaV3_2G013030' => 'csa', 'CsaV3_2G013050' => 'csa', 'CsaV3_2G015620' => 'csa', 'CsaV3_3G012590' => 'csa', 'CsaV3_3G012600' => 'csa', 'CSS0001641' => 'camsi', 'CSS0008310' => 'camsi', 'CSS0013011' => 'camsi', 'CSS0017147' => 'camsi', 'CSS0022970' => 'camsi', 'CSS0025655' => 'camsi', 'CSS0028665' => 'camsi', 'CSS0029117' => 'camsi', 'CSS0032024' => 'camsi', 'CSS0039681' => 'camsi', 'CSS0046516' => 'camsi', 'CSS0050307' => 'camsi', 'DCAR_005871' => 'dca', 'DCAR_007342' => 'dca', 'DCAR_024228' => 'dca', 'DCAR_027277' => 'dca', 'DCAR_030718' => 'dca', 'Dinv20287' => 'din', 'Dinv22461' => 'din', 'Dinv22464' => 'din', 'Dinv29912' => 'din', 'Dinv29913' => 'din', 'Dinv34580' => 'din', 'Dinv34582' => 'din', 'Dinv44632' => 'din', 'Duzib052G0266' => 'dzi', 'Duzib133G0907' => 'dzi', 'Duzib133G1034' => 'dzi', 'Duzib138G0207' => 'dzi', 'Duzib138G0491' => 'dzi', 'Duzib151G0812' => 'dzi', 'Duzib151G1166' => 'dzi', 'Duzib168G0192' => 'dzi', 'Duzib211G0077' => 'dzi', 'Duzib212G0429' => 'dzi', 'Duzib212G0472' => 'dzi', 'ECA233G2617' => 'eca', 'ECA236G4188' => 'eca', 'ECA240G0936' => 'eca', 'ECA240G1129' => 'eca', 'ECA247G0623' => 'eca', 'EL10Ac5g10451' => 'bvu', 'EL10Ac5g10453' => 'bvu', 'EL10Ac5g10894' => 'bvu', 'Eucgr.H00192' => 'egr', 'Eucgr.H00193' => 'egr', 'Eucgr.H00194' => 'egr', 'Eucgr.J01562' => 'egr', 'Eucgr.K03301' => 'egr', 'FAN02G0632' => 'fan', 'FAN05G5378' => 'fan', 'FAN09G3247' => 'fan', 'FAN12G0435' => 'fan', 'FAN12G2426' => 'fan', 'FAN14G1707' => 'fan', 'FAN14G4725' => 'fan', 'FAN15G2071' => 'fan', 'FAN17G3065' => 'fan', 'FAN19G1376' => 'fan', 'FAN20G0354' => 'fan', 'FAN20G2429' => 'fan', 'FAN20G2658' => 'fan', 'FAN24G2343' => 'fan', 'FAN27G2362' => 'fan', 'FAN28G1765' => 'fan', 'FvH4_1g16020' => 'fve', 'FvH4_2g04890' => 'fve', 'FvH4_2g22270' => 'fve', 'FvH4_4g02630' => 'fve', 'FvH4_4g02640' => 'fve', 'FvH4_6g02650' => 'fve', 'Glyma.02G140600' => 'gma', 'Glyma.03G159900' => 'gma', 'Glyma.05G234800' => 'gma', 'Glyma.07G269600' => 'gma', 'Glyma.08G042300' => 'gma', 'Glyma.10G033500' => 'gma', 'Glyma.10G185200' => 'gma', 'Glyma.17G004300' => 'gma', 'Glyma.19G161900' => 'gma', 'Glyma.20G205100' => 'gma', 'Glyma.20G205200' => 'gma', 'Gohir.A01G139101' => 'ghi', 'Gohir.A02G035600' => 'ghi', 'Gohir.A02G117901' => 'ghi', 'Gohir.A07G210100' => 'ghi', 'Gohir.A07G210200' => 'ghi', 'Gohir.A08G061100' => 'ghi', 'Gohir.A09G223000' => 'ghi', 'Gohir.A09G223100' => 'ghi', 'Gohir.A10G113900' => 'ghi', 'Gohir.A10G114000' => 'ghi', 'Gohir.D02G042300' => 'ghi', 'Gohir.D07G216100' => 'ghi', 'Gohir.D07G216200' => 'ghi', 'Gohir.D08G070400' => 'ghi', 'Gohir.D09G225000' => 'ghi', 'Gohir.D09G225100' => 'ghi', 'Gohir.D10G152300' => 'ghi', 'Gohir.D10G153200' => 'ghi', 'Gohir.D11G133701' => 'ghi', 'Gorai.004G074100' => 'gra', 'Gorai.005G046800' => 'gra', 'Gorai.006G246500' => 'gra', 'Gorai.006G246600' => 'gra', 'Gorai.007G142900' => 'gra', 'Gorai.011G171000' => 'gra', 'Gorai.011G171100' => 'gra', 'Gorai.013G104300' => 'gra', 'Gorai.013G104400' => 'gra', 'GSVIVG01000754001' => 'vvi', 'GSVIVG01000756001' => 'vvi', 'GSVIVG01010903001' => 'vvi', 'GSVIVG01017623001' => 'vvi', 'GSVIVG01018113001' => 'vvi', 'GSVIVG01018116001' => 'vvi', 'GSVIVG01018118001' => 'vvi', 'HanXRQChr03g0076211' => 'han', 'HanXRQChr03g0092431' => 'han', 'HanXRQChr03g0092441' => 'han', 'HanXRQChr03g0092591' => 'han', 'HanXRQChr03g0092671' => 'han', 'HanXRQChr03g0092681' => 'han', 'HanXRQChr03g0092691' => 'han', 'HanXRQChr03g0092701' => 'han', 'HanXRQChr03g0092721' => 'han', 'HanXRQChr03g0092731' => 'han', 'HanXRQChr04g0113681' => 'han', 'HanXRQChr10g0281371' => 'han', 'HanXRQChr11g0337141' => 'han', 'HanXRQChr13g0424521' => 'han', 'HanXRQChr13g0424531' => 'han', 'HanXRQChr13g0424541' => 'han', 'HanXRQChr16g0498221' => 'han', 'Haze_04377' => 'cav', 'Haze_11298' => 'cav', 'Haze_24547' => 'cav', 'Haze_24550' => 'cav', 'Haze_26587' => 'cav', 'Hma1.2p1_0650F.1_g195410' => 'hma', 'Hma1.2p1_0893F.1_g233470' => 'hma', 'HPP92_006508' => 'vpl', 'HPP92_024780' => 'vpl', 'Hund02688' => 'sun', 'Hund09380' => 'sun', 'Hund09381' => 'sun', 'Hund09832' => 'sun', 'Hund09833' => 'sun', 'Hund11351' => 'sun', 'Hund11513' => 'sun', 'Lalb_Chr06g0162591' => 'lal', 'Lalb_Chr06g0162601' => 'lal', 'Lalb_Chr06g0169321' => 'lal', 'Lalb_Chr09g0330951' => 'lal', 'Lalb_Chr16g0387631' => 'lal', 'Lalb_Chr21g0306241' => 'lal', 'Lalb_Chr25g0290051' => 'lal', 'Lalb_Chr25g0290061' => 'lal', 'Lalb_Chr25g0290071' => 'lal', 'Lj1g0003876' => 'lja', 'Lj1P1207T36' => 'lonja', 'Lj2C1156G12' => 'lonja', 'Lj3A793G39' => 'lonja', 'Lj3C580G2' => 'lonja', 'Lj3C780G2' => 'lonja', 'Lj3C780T4' => 'lonja', 'Lj3C793G9' => 'lonja', 'Lj4g0012960' => 'lja', 'Lj5g0021252' => 'lja', 'Lj5g0021484' => 'lja', 'Lj5g0024528' => 'lja', 'Lj6A399T12' => 'lonja', 'Lj6A656G65' => 'lonja', 'Lsat_1_v5_gn_3_125500' => 'lsa', 'Lsat_1_v5_gn_3_125540' => 'lsa', 'Lsat_1_v5_gn_5_72701' => 'lsa', 'Lsat_1_v5_gn_8_91560' => 'lsa', 'Lsat_1_v5_gn_9_9640' => 'lsa', 'Manes.01G200600' => 'mes', 'Manes.01G200700' => 'mes', 'Manes.03G168900' => 'mes', 'Manes.03G169000' => 'mes', 'Manes.05G085801' => 'mes', 'Manes.05G086200' => 'mes', 'Manes.15G036700' => 'mes', 'Manes.15G036900' => 'mes', 'Mapoly0004s0172' => 'mpo', 'Mapoly0023s0001' => 'mpo', 'Mapoly0142s0012' => 'mpo', 'MBI01_g32854_MAGBIO' => 'mbi', 'MBI11_g24427_MAGBIO' => 'mbi', 'MBI11_g47319_MAGBIO' => 'mbi', 'MCO01G433' => 'mco', 'MD00G1187800' => 'mdo', 'MD04G1226500' => 'mdo', 'MD05G1203900' => 'mdo', 'MD10G1191100' => 'mdo', 'MD12G1243500' => 'mdo', 'MD13G1207000' => 'mdo', 'MD13G1207100' => 'mdo', 'MD16G1208600' => 'mdo', 'Medtr1g050352' => 'mtr', 'Medtr1g070385' => 'mtr', 'Medtr1g070450' => 'mtr', 'Medtr1g075200' => 'mtr', 'Medtr1g075250' => 'mtr', 'Medtr1g075260' => 'mtr', 'Medtr1g475250' => 'mtr', 'Medtr4g075450' => 'mtr', 'Medtr7g096300' => 'mtr', 'Medtr8g105110' => 'mtr', 'MELO3C006470.2' => 'cme', 'MELO3C006471.2' => 'cme', 'MELO3C020772.2' => 'cme', 'MELO3C026780.2' => 'cme', 'MELO3C026781.2' => 'cme', 'Migut.D00390' => 'egut', 'Migut.G00435' => 'egut', 'Migut.G00436' => 'egut', 'Migut.G00718' => 'egut', 'MSTRG.21891' => 'ama', 'MSTRG.26910' => 'ama', 'MSTRG.4099' => 'ama', 'MSTRG.9925' => 'ama', 'Nitab4.5_0000165g0010' => 'nta', 'Nitab4.5_0000209g0180' => 'nta', 'Nitab4.5_0000244g0440' => 'nta', 'Nitab4.5_0000525g0220' => 'nta', 'Nitab4.5_0001597g0020' => 'nta', 'Nitab4.5_0001878g0040' => 'nta', 'Nitab4.5_0001878g0060' => 'nta', 'Nitab4.5_0002838g0100' => 'nta', 'Nitab4.5_0002838g0120' => 'nta', 'Nitab4.5_0004798g0030' => 'nta', 'Nitab4.5_0005420g0010' => 'nta', 'Nitab4.5_0005507g0010' => 'nta', 'Nitab4.5_0005574g0020' => 'nta', 'Nitab4.5_0005838g0010' => 'nta', 'Nitab4.5_0010580g0020' => 'nta', 'Nn1g02599' => 'nnu', 'Nn1g02608' => 'nnu', 'Nn3g17742' => 'nnu', 'Nn3g19534' => 'nnu', 'Nn3g19535' => 'nnu', 'Oeu008790.1' => 'oeu', 'Oeu008792.1' => 'oeu', 'Oeu032590.1' => 'oeu', 'Oeu035349.1' => 'oeu', 'Oeu049791.1' => 'oeu', 'Os01g0774500' => 'osa', 'Os03g0628800' => 'osa', 'Os03g0798600' => 'osa', 'Os05g0508800' => 'osa', 'Peaxi162Scf00036g02018' => 'pax', 'Peaxi162Scf00578g00032' => 'pax', 'Peaxi162Scf00578g00317' => 'pax', 'Peaxi162Scf00785g00114' => 'pax', 'Peaxi162Scf00813g00119' => 'pax', 'Peaxi162Scf00906g00227' => 'pax', 'PGR004G0875' => 'pgr', 'PGR004G2424' => 'pgr', 'PGR031G1239' => 'pgr', 'PGR031G2474' => 'pgr', 'PGR044G0423' => 'pgr', 'PGSC0003DMG400001128' => 'stu', 'PGSC0003DMG400007336' => 'stu', 'PGSC0003DMG400016318' => 'stu', 'PGSC0003DMG400016319' => 'stu', 'PGSC0003DMG400018074' => 'stu', 'Phvul.001G157700' => 'pvu', 'Phvul.002G148550' => 'pvu', 'Phvul.002G320200' => 'pvu', 'Phvul.003G089200' => 'pvu', 'Phvul.007G126000' => 'pvu', 'Phvul.007G126100' => 'pvu', 'Phvul.007G178000' => 'pvu', 'Phvul.007G178200' => 'pvu', 'Potri.002G043000' => 'ptr', 'Potri.002G043200' => 'ptr', 'Potri.003G123750' => 'ptr', 'Potri.005G055401' => 'ptr', 'Potri.005G219700' => 'ptr', 'Potri.005G220000' => 'ptr', 'Potri.008G161901' => 'ptr', 'Potri.008G162000' => 'ptr', 'Potri.008G162400' => 'ptr', 'Potri.010G076900' => 'ptr', 'Pp3c12_9180' => 'ppa', 'Pp3c13_19770' => 'ppa', 'Pp3c14_22950' => 'ppa', 'Pp3c16_12160' => 'ppa', 'Pp3c27_7820' => 'ppa', 'Pp3c2_3490' => 'ppa', 'Pp3c3_23700' => 'ppa', 'Pp3c3_36520' => 'ppa', 'Pp3c4_15250' => 'ppa', 'PRCOL_00007002' => 'pco', 'Prupe.1G030600' => 'ppe', 'Prupe.1G030700' => 'ppe', 'Prupe.6G345200' => 'ppe', 'Prupe.8G230300' => 'ppe', 'Prupe.8G230500' => 'ppe', 'Psat3g059600' => 'psa', 'Psat5g200920' => 'psa', 'Psat6g056440' => 'psa', 'Psat6g057360' => 'psa', 'Psat6g134120' => 'psa', 'Psat6g134160' => 'psa', 'Psat7g008640' => 'psa', 'Psat7g185240' => 'psa', 'PSO017G1330' => 'pso', 'PSO063G6097' => 'pso', 'PSO170G0835' => 'pso', 'PSO170G2499' => 'pso', 'PSO210G5058' => 'pso', 'PSO210G6154' => 'pso', 'PSO585G0031' => 'pso', 'PSO832G0264' => 'pso', 'PSO832G4288' => 'pso', 'QL03p027355' => 'qlo', 'QL03p027430' => 'qlo', 'QL04p081380' => 'qlo', 'QL06p015642' => 'qlo', 'QL06p015650' => 'qlo', 'QL06p015686' => 'qlo', 'QL12p042927' => 'qlo', 'QL93p1863_0035' => 'qlo', 'RcHm_v2.0_Chr3g0450581' => 'rch', 'RcHm_v2.0_Chr4g0390371' => 'rch', 'RcHm_v2.0_Chr4g0390381' => 'rch', 'RcHm_v2.0_Chr4g0390491' => 'rch', 'RcHm_v2.0_Chr4g0390501' => 'rch', 'RcHm_v2.0_Chr6g0289231' => 'rch', 'Rhsim04G0190400' => 'rsi', 'Rhsim04G0190500' => 'rsi', 'Rhsim04G0190600' => 'rsi', 'Rhsim13G0031400' => 'rsi', 'Rhsim13G0165600' => 'rsi', 'RhsimUnG0114600' => 'rsi', 'RhsimUnG0114700' => 'rsi', 'Sabra02G0034800' => 'sbr', 'Sabra02G0035100' => 'sbr', 'Sabra05G0168600' => 'sbr', 'Sabra05G0168800' => 'sbr', 'Sabra08G0123700' => 'sbr', 'Sabra10G0031900' => 'sbr', 'Sabra13G0039000' => 'sbr', 'SalBow2G0782' => 'sbo', 'SalBow2G1403' => 'sbo', 'SalBow4G0074' => 'sbo', 'SalBow4G2635' => 'sbo', 'SalBow5G3010' => 'sbo', 'Sc05g0000870' => 'sci', 'Sc05g0000890' => 'sci', 'Sc13g0005000' => 'sci', 'Sc13g0005030' => 'sci', 'Sc19g0003790' => 'sci', 'Sc19g0003800' => 'sci', 'Sed0003467' => 'sed', 'Sed0009355' => 'sed', 'Sed0009894' => 'sed', 'Sed0011972' => 'sed', 'Sed0021483' => 'sed', 'Sed0021750' => 'sed', 'Sed0026279' => 'sed', 'SEGI_05312' => 'sgi', 'SEGI_10112' => 'sgi', 'SEGI_15835' => 'sgi', 'SEGI_30386' => 'sgi', 'SEGI_34122' => 'sgi', 'SEGI_35063' => 'sgi', 'SGA_v2.0_scaffold101G29794' => 'sas', 'SGA_v2.0_scaffold1G00573' => 'sas', 'SGA_v2.0_scaffold79G25637' => 'sas', 'SGA_v2.0_scaffold88G27283' => 'sas', 'SGA_v2.0_scaffold88G27285' => 'sas', 'SGA_v2.0_scaffold88G27331' => 'sas', 'SHI09937' => 'shi', 'SMO119G0302' => 'smo', 'SMO137G0231' => 'smo', 'SMO367G1151' => 'smo', 'Solyc02g082000.3' => 'sly', 'Solyc06g031670.3' => 'sly', 'Solyc06g053810.3' => 'sly', 'Solyc07g025457.1' => 'sly', 'Solyc08g059740.1' => 'sly', 'Solyc08g059750.3' => 'sly', 'Solyc09g083370.3' => 'sly', 'Solyc12g038950.3' => 'sly', 'Sopen02g026630' => 'spe', 'Sopen06g018930' => 'spe', 'Sopen06g018940' => 'spe', 'Sopen08g009460' => 'spe', 'Sopen09g032290' => 'spe', 'Sp1g03080' => 'spa', 'Sp1g03090' => 'spa', 'Sp1g05480' => 'spa', 'Sp2g07860' => 'spa', 'Sp2g08430' => 'spa', 'Sp2g08440' => 'spa', 'Sp2g26200' => 'spa', 'Sp4g13170' => 'spa', 'Sp6g33840' => 'spa', 'SpUn1204_0010' => 'spa', 'TAR365G0908' => 'tar', 'TAR381G1270' => 'tar', 'TAR381G1651' => 'tar', 'TAR625G1131' => 'tar', 'TAR633G0962' => 'tar', 'TAR633G1729' => 'tar', 'TAR633G1864' => 'tar', 'TAR636G0221' => 'tar', 'TAR636G0314' => 'tar', 'TAR636G3202' => 'tar', 'THA.LOC104800805' => 'tha', 'THA.LOC104801096' => 'tha', 'THA.LOC104801555' => 'tha', 'THA.LOC104808491' => 'tha', 'THA.LOC104808595' => 'tha', 'THA.LOC104815985' => 'tha', 'THA.LOC104822250' => 'tha', 'THA.LOC104826071' => 'tha', 'Thecc.01G265200' => 'tca', 'Thecc.01G265300' => 'tca', 'Thecc.01G265700' => 'tca', 'Thecc.03G109100' => 'tca', 'Thecc.04G245900' => 'tca', 'Thecc.04G246000' => 'tca', 'Thhalv10003334m.g' => 'esa', 'Thhalv10005508m.g' => 'esa', 'Thhalv10005643m.g' => 'esa', 'Thhalv10007316m.g' => 'esa', 'Thhalv10009006m.g' => 'esa', 'Thhalv10009309m.g' => 'esa', 'Thhalv10014917m.g' => 'esa', 'Thhalv10014919m.g' => 'esa', 'Thhalv10015393m.g' => 'esa', 'Thhalv10016515m.g' => 'esa', 'Thhalv10029242m.g' => 'esa', 'TPR.G16654' => 'tpr', 'TPR.G20589' => 'tpr', 'TPR.G23029' => 'tpr', 'TPR.G27731' => 'tpr', 'TPR.G28889' => 'tpr', 'TPR.G28899' => 'tpr', 'TPR.G30846' => 'tpr', 'TPR.G5452' => 'tpr', 'TPR.G5713' => 'tpr', 'TPR.G9046' => 'tpr', 'TPR.G9061' => 'tpr', 'TWI09G1075' => 'twi', 'TWI12G0806' => 'twi', 'TWI18G0108' => 'twi', 'TWI53G1361' => 'twi', 'TWI73G0185' => 'twi', 'TWI73G0427' => 'twi', 'unitig_37.g12001' => 'ugi', 'unitig_747.g21660' => 'ugi', 'unitig_748.g7232' => 'ugi', 'unitig_748.g7315' => 'ugi', 'unitig_85.g27262' => 'ugi', 'unitig_92.g28220' => 'ugi', 'vmacro02632' => 'vma', 'vmacro08410' => 'vma', 'vmacro08411' => 'vma', 'vmacro15407' => 'vma', 'VMungo0251G3619' => 'vmu', 'VMungo0720G1204' => 'vmu', 'VMungo0720G1918' => 'vmu', 'VMungo0720G2387' => 'vmu', 'VMungo0720G2961' => 'vmu', 'VMungo1215G2154' => 'vmu', 'VMungo1383G2411' => 'vmu', 'Zm00001eb051130' => 'zma', 'Zm00001eb116830' => 'zma', 'Zm00001eb116850' => 'zma', 'Zm00001eb151740' => 'zma', 'Zm00001eb292360' => 'zma', 'Zm00001eb301640' => 'zma' ), 'gf_id' => 'HOM05D000856', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000856' ), 'data_identifier' => 'HOM05D000856', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000856', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p00010' => 'bna', 'A03p04160' => 'bna', 'A03p17160' => 'bna', 'A04p23370' => 'bna', 'A05p14860' => 'bna', 'A08p37020' => 'bna', 'A09p08050' => 'bna', 'A09p66800' => 'bna', 'A09p67940' => 'bna', 'A10p02680' => 'bna', 'A10p05320' => 'bna', 'Aa31LG1G20560' => 'aar', 'Aa31LG1G20610' => 'aar', 'Aa31LG1G7810' => 'aar', 'Aa31LG5G3590' => 'aar', 'Aa31LG5G6140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3819' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4683' => 'aag', 'Actinidia04480' => 'ach', 'Actinidia05466' => 'ach', 'Actinidia08445' => 'ach', 'Actinidia21170' => 'ach', 'Actinidia24812' => 'ach', 'Actinidia24951' => 'ach', 'Actinidia40088' => 'ach', 'Ah.02g111660' => 'amhyb', 'Ah.11g048900' => 'amhyb', 'Ah.11g049910' => 'amhyb', 'AL1G13870' => 'aly', 'AL1G13880' => 'aly', 'AL1G16760' => 'aly', 'AL390U10020' => 'aly', 'AL4G25520' => 'aly', 'AL6G19890' => 'aly', 'AL6G19900' => 'aly', 'AL6G19910' => 'aly', 'AL8G40100' => 'aly', 'Aqoxy2G03562' => 'aox', 'Aqoxy5G00316' => 'aox', 'Aqoxy5G00926' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1628KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1H403S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2FU6SJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.882I6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8YRY2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YN1SN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AF70II' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZA8L1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F916KL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHRD8H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KTZ8QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S22EMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8M29T' => 'arhy', 'AT1G04270' => 'ath', 'AT1G04280' => 'ath', 'AT1G06750' => 'ath', 'AT1G33850' => 'ath', 'AT2G30630' => 'ath', 'AT5G09490' => 'ath', 'AT5G09500' => 'ath', 'AT5G09510' => 'ath', 'AT5G43640' => 'ath', 'AT5G63070' => 'ath', 'ATR0605G315' => 'atr', 'Atru.chr11.175' => 'acertr', 'Atru.chr11.653' => 'acertr', 'Atru.chr3.1616' => 'acertr', 'Atru.chr4.2230' => 'acertr', 'Atru.chr4.2232' => 'acertr', 'Atru.chr5.1598' => 'acertr', 'Atru.chr5.1600' => 'acertr', 'Atru.chr5.2188' => 'acertr', 'AUR62008326' => 'cqu', 'AUR62011922' => 'cqu', 'AUR62011924' => 'cqu', 'AUR62021771' => 'cqu', 'AUR62032237' => 'cqu', 'AUR62032240' => 'cqu', 'BcaB01g05572' => 'bca', 'BcaB02g10337' => 'bca', 'BcaB04g19944' => 'bca', 'BcaB05g21548' => 'bca', 'BcaB05g21549' => 'bca', 'BcaB05g23227' => 'bca', 'BcaB06g26256' => 'bca', 'BcaB06g26257' => 'bca', 'BcaB06g28379' => 'bca', 'BcaC02g11159' => 'bca', 'BcaC03g13258' => 'bca', 'BcaC03g13259' => 'bca', 'BcaC05g24456' => 'bca', 'BcaC05g24457' => 'bca', 'BcaC07g36922' => 'bca', 'BcaC07g36923' => 'bca', 'BcaC07g42050' => 'bca', 'BcaC07g42176' => 'bca', 'BcaC07g42195' => 'bca', 'BcaC07g42196' => 'bca', 'BcaNung06674' => 'bca', 'BolC2t06351H' => 'bol', 'BolC2t06352H' => 'bol', 'BolC3t12993H' => 'bol', 'BolC4t23525H' => 'bol', 'BolC4t27475H' => 'bol', 'BolC5t29025H' => 'bol', 'BolC5t29026H' => 'bol', 'BolC8t46898H' => 'bol', 'BolC8t46899H' => 'bol', 'BolC8t52630H' => 'bol', 'BolC8t52765H' => 'bol', 'BolC9t53824H' => 'bol', 'BraA03t09760Z' => 'bra', 'BraA03t10990Z' => 'bra', 'BraA05t20413Z' => 'bra', 'BraA08t35602Z' => 'bra', 'BraA09t36458Z' => 'bra', 'BraA09t42018Z' => 'bra', 'BraA09t42129Z' => 'bra', 'BraA10t42536Z' => 'bra', 'BraA10t42537Z' => 'bra', 'C01p10690' => 'bna', 'C02p03890' => 'bna', 'C02p03900' => 'bna', 'C03p04620' => 'bna', 'C04p19870' => 'bna', 'C04p59670' => 'bna', 'C05p02460' => 'bna', 'C05p02470' => 'bna', 'C08p00980' => 'bna', 'C08p00990' => 'bna', 'C08p51030' => 'bna', 'C08p52360' => 'bna', 'C09p09120' => 'bna', 'CAN.G19.15' => 'can', 'CAN.G251.10' => 'can', 'CAN.G251.9' => 'can', 'CAN.G398.24' => 'can', 'CAN.G410.32' => 'can', 'CAN.G881.2' => 'can', 'CANSAT01G3025' => 'cansat', 'CANSAT78G1211' => 'cansat', 'CANSAT78G1218' => 'cansat', 'CANSAT78G1521' => 'cansat', 'CANSAT78G1670' => 'cansat', 'CARHR003600' => 'chi', 'CARHR003610' => 'chi', 'CARHR006290' => 'chi', 'CARHR006430' => 'chi', 'CARHR124110' => 'chi', 'CARHR203870' => 'chi', 'CARHR203880' => 'chi', 'CARHR203890' => 'chi', 'CARHR276880' => 'chi', 'Carub.0001s0346' => 'cru', 'Carub.0001s0347' => 'cru', 'Carub.0001s0607' => 'cru', 'Carub.0003s2768' => 'cru', 'Carub.0003s2769' => 'cru', 'Carub.0004s1178' => 'cru', 'Carub.0006s0806' => 'cru', 'Carub.0006s0807' => 'cru', 'Carub.0006s0808' => 'cru', 'Carub.0008s0501' => 'cru', 'Carub.0008s2379' => 'cru', 'Ca_08655_v3' => 'car', 'Ca_08922_v3' => 'car', 'Ca_08923_v3' => 'car', 'Ca_09119_v3' => 'car', 'Ca_09703_v3' => 'car', 'Ca_09705_v3' => 'car', 'Ca_09835_v3' => 'car', 'Ca_26403_v3' => 'car', 'Ca_30719_v3' => 'car', 'CBR_g17958' => 'cbr', 'CBR_g40516' => 'cbr', 'Cc00_g05350' => 'ccan', 'Cc01_g18690' => 'ccan', 'Cc03_g04830' => 'ccan', 'Cc03_g04850' => 'ccan', 'CDE02G4469' => 'cde', 'CDE06G0883' => 'cde', 'CDE06G1295' => 'cde', 'CDE06G1390' => 'cde', 'CDE07G0584' => 'cde', 'CDE07G1084' => 'cde', 'CDE08G1259' => 'cde', 'Cfa002341' => 'cfa', 'Cfa024337' => 'cfa', 'Ciclev10004749m.g' => 'ccl', 'Ciclev10006127m.g' => 'ccl', 'Ciclev10019720m.g' => 'ccl', 'Ciclev10022652m.g' => 'ccl', 'CiPaw.01G190400' => 'cil', 'CiPaw.01G190500' => 'cil', 'CiPaw.02G116400' => 'cil', 'CiPaw.02G116500' => 'cil', 'CiPaw.04G183000' => 'cil', 'CiPaw.04G183300' => 'cil', 'ClCG05G004610' => 'cla', 'ClCG05G004620' => 'cla', 'ClCG06G006730' => 'cla', 'ClCG06G006740' => 'cla', 'ClCG11G003690' => 'cla', 'COL.COLO4_08276' => 'col', 'COL.COLO4_08277' => 'col', 'COL.COLO4_15787' => 'col', 'COL.COLO4_15789' => 'col', 'Cpa.g.c44815' => 'cpa', 'Cpa.g.sc52.144' => 'cpa', 'Cpa.g.sc58.46' => 'cpa', 'Cpa.g.sc58.47' => 'cpa', 'Cre08.g360900' => 'cre', 'CsaV3_2G013030' => 'csa', 'CsaV3_2G013050' => 'csa', 'CsaV3_2G015620' => 'csa', 'CsaV3_3G012590' => 'csa', 'CsaV3_3G012600' => 'csa', 'CSS0001641' => 'camsi', 'CSS0008310' => 'camsi', 'CSS0013011' => 'camsi', 'CSS0017147' => 'camsi', 'CSS0022970' => 'camsi', 'CSS0025655' => 'camsi', 'CSS0028665' => 'camsi', 'CSS0029117' => 'camsi', 'CSS0032024' => 'camsi', 'CSS0039681' => 'camsi', 'CSS0046516' => 'camsi', 'CSS0050307' => 'camsi', 'DCAR_005871' => 'dca', 'DCAR_007342' => 'dca', 'DCAR_024228' => 'dca', 'DCAR_027277' => 'dca', 'DCAR_030718' => 'dca', 'Dinv20287' => 'din', 'Dinv22461' => 'din', 'Dinv22464' => 'din', 'Dinv29912' => 'din', 'Dinv29913' => 'din', 'Dinv34580' => 'din', 'Dinv34582' => 'din', 'Dinv44632' => 'din', 'Duzib052G0266' => 'dzi', 'Duzib133G0907' => 'dzi', 'Duzib133G1034' => 'dzi', 'Duzib138G0207' => 'dzi', 'Duzib138G0491' => 'dzi', 'Duzib151G0812' => 'dzi', 'Duzib151G1166' => 'dzi', 'Duzib168G0192' => 'dzi', 'Duzib211G0077' => 'dzi', 'Duzib212G0429' => 'dzi', 'Duzib212G0472' => 'dzi', 'ECA233G2617' => 'eca', 'ECA236G4188' => 'eca', 'ECA240G0936' => 'eca', 'ECA240G1129' => 'eca', 'ECA247G0623' => 'eca', 'EL10Ac5g10451' => 'bvu', 'EL10Ac5g10453' => 'bvu', 'EL10Ac5g10894' => 'bvu', 'Eucgr.H00192' => 'egr', 'Eucgr.H00193' => 'egr', 'Eucgr.H00194' => 'egr', 'Eucgr.J01562' => 'egr', 'Eucgr.K03301' => 'egr', 'FAN02G0632' => 'fan', 'FAN05G5378' => 'fan', 'FAN09G3247' => 'fan', 'FAN12G0435' => 'fan', 'FAN12G2426' => 'fan', 'FAN14G1707' => 'fan', 'FAN14G4725' => 'fan', 'FAN15G2071' => 'fan', 'FAN17G3065' => 'fan', 'FAN19G1376' => 'fan', 'FAN20G0354' => 'fan', 'FAN20G2429' => 'fan', 'FAN20G2658' => 'fan', 'FAN24G2343' => 'fan', 'FAN27G2362' => 'fan', 'FAN28G1765' => 'fan', 'FvH4_1g16020' => 'fve', 'FvH4_2g04890' => 'fve', 'FvH4_2g22270' => 'fve', 'FvH4_4g02630' => 'fve', 'FvH4_4g02640' => 'fve', 'FvH4_6g02650' => 'fve', 'Glyma.02G140600' => 'gma', 'Glyma.03G159900' => 'gma', 'Glyma.05G234800' => 'gma', 'Glyma.07G269600' => 'gma', 'Glyma.08G042300' => 'gma', 'Glyma.10G033500' => 'gma', 'Glyma.10G185200' => 'gma', 'Glyma.17G004300' => 'gma', 'Glyma.19G161900' => 'gma', 'Glyma.20G205100' => 'gma', 'Glyma.20G205200' => 'gma', 'Gohir.A01G139101' => 'ghi', 'Gohir.A02G035600' => 'ghi', 'Gohir.A02G117901' => 'ghi', 'Gohir.A07G210100' => 'ghi', 'Gohir.A07G210200' => 'ghi', 'Gohir.A08G061100' => 'ghi', 'Gohir.A09G223000' => 'ghi', 'Gohir.A09G223100' => 'ghi', 'Gohir.A10G113900' => 'ghi', 'Gohir.A10G114000' => 'ghi', 'Gohir.D02G042300' => 'ghi', 'Gohir.D07G216100' => 'ghi', 'Gohir.D07G216200' => 'ghi', 'Gohir.D08G070400' => 'ghi', 'Gohir.D09G225000' => 'ghi', 'Gohir.D09G225100' => 'ghi', 'Gohir.D10G152300' => 'ghi', 'Gohir.D10G153200' => 'ghi', 'Gohir.D11G133701' => 'ghi', 'Gorai.004G074100' => 'gra', 'Gorai.005G046800' => 'gra', 'Gorai.006G246500' => 'gra', 'Gorai.006G246600' => 'gra', 'Gorai.007G142900' => 'gra', 'Gorai.011G171000' => 'gra', 'Gorai.011G171100' => 'gra', 'Gorai.013G104300' => 'gra', 'Gorai.013G104400' => 'gra', 'GSVIVG01000754001' => 'vvi', 'GSVIVG01000756001' => 'vvi', 'GSVIVG01010903001' => 'vvi', 'GSVIVG01017623001' => 'vvi', 'GSVIVG01018113001' => 'vvi', 'GSVIVG01018116001' => 'vvi', 'GSVIVG01018118001' => 'vvi', 'HanXRQChr03g0076211' => 'han', 'HanXRQChr03g0092431' => 'han', 'HanXRQChr03g0092441' => 'han', 'HanXRQChr03g0092591' => 'han', 'HanXRQChr03g0092671' => 'han', 'HanXRQChr03g0092681' => 'han', 'HanXRQChr03g0092691' => 'han', 'HanXRQChr03g0092701' => 'han', 'HanXRQChr03g0092721' => 'han', 'HanXRQChr03g0092731' => 'han', 'HanXRQChr04g0113681' => 'han', 'HanXRQChr10g0281371' => 'han', 'HanXRQChr11g0337141' => 'han', 'HanXRQChr13g0424521' => 'han', 'HanXRQChr13g0424531' => 'han', 'HanXRQChr13g0424541' => 'han', 'HanXRQChr16g0498221' => 'han', 'Haze_04377' => 'cav', 'Haze_11298' => 'cav', 'Haze_24547' => 'cav', 'Haze_24550' => 'cav', 'Haze_26587' => 'cav', 'Hma1.2p1_0650F.1_g195410' => 'hma', 'Hma1.2p1_0893F.1_g233470' => 'hma', 'HPP92_006508' => 'vpl', 'HPP92_024780' => 'vpl', 'Hund02688' => 'sun', 'Hund09380' => 'sun', 'Hund09381' => 'sun', 'Hund09832' => 'sun', 'Hund09833' => 'sun', 'Hund11351' => 'sun', 'Hund11513' => 'sun', 'Lalb_Chr06g0162591' => 'lal', 'Lalb_Chr06g0162601' => 'lal', 'Lalb_Chr06g0169321' => 'lal', 'Lalb_Chr09g0330951' => 'lal', 'Lalb_Chr16g0387631' => 'lal', 'Lalb_Chr21g0306241' => 'lal', 'Lalb_Chr25g0290051' => 'lal', 'Lalb_Chr25g0290061' => 'lal', 'Lalb_Chr25g0290071' => 'lal', 'Lj1g0003876' => 'lja', 'Lj1P1207T36' => 'lonja', 'Lj2C1156G12' => 'lonja', 'Lj3A793G39' => 'lonja', 'Lj3C580G2' => 'lonja', 'Lj3C780G2' => 'lonja', 'Lj3C780T4' => 'lonja', 'Lj3C793G9' => 'lonja', 'Lj4g0012960' => 'lja', 'Lj5g0021252' => 'lja', 'Lj5g0021484' => 'lja', 'Lj5g0024528' => 'lja', 'Lj6A399T12' => 'lonja', 'Lj6A656G65' => 'lonja', 'Lsat_1_v5_gn_3_125500' => 'lsa', 'Lsat_1_v5_gn_3_125540' => 'lsa', 'Lsat_1_v5_gn_5_72701' => 'lsa', 'Lsat_1_v5_gn_8_91560' => 'lsa', 'Lsat_1_v5_gn_9_9640' => 'lsa', 'Manes.01G200600' => 'mes', 'Manes.01G200700' => 'mes', 'Manes.03G168900' => 'mes', 'Manes.03G169000' => 'mes', 'Manes.05G085801' => 'mes', 'Manes.05G086200' => 'mes', 'Manes.15G036700' => 'mes', 'Manes.15G036900' => 'mes', 'Mapoly0004s0172' => 'mpo', 'Mapoly0023s0001' => 'mpo', 'Mapoly0142s0012' => 'mpo', 'MBI01_g32854_MAGBIO' => 'mbi', 'MBI11_g24427_MAGBIO' => 'mbi', 'MBI11_g47319_MAGBIO' => 'mbi', 'MCO01G433' => 'mco', 'MD00G1187800' => 'mdo', 'MD04G1226500' => 'mdo', 'MD05G1203900' => 'mdo', 'MD10G1191100' => 'mdo', 'MD12G1243500' => 'mdo', 'MD13G1207000' => 'mdo', 'MD13G1207100' => 'mdo', 'MD16G1208600' => 'mdo', 'Medtr1g050352' => 'mtr', 'Medtr1g070385' => 'mtr', 'Medtr1g070450' => 'mtr', 'Medtr1g075200' => 'mtr', 'Medtr1g075250' => 'mtr', 'Medtr1g075260' => 'mtr', 'Medtr1g475250' => 'mtr', 'Medtr4g075450' => 'mtr', 'Medtr7g096300' => 'mtr', 'Medtr8g105110' => 'mtr', 'MELO3C006470.2' => 'cme', 'MELO3C006471.2' => 'cme', 'MELO3C020772.2' => 'cme', 'MELO3C026780.2' => 'cme', 'MELO3C026781.2' => 'cme', 'Migut.D00390' => 'egut', 'Migut.G00435' => 'egut', 'Migut.G00436' => 'egut', 'Migut.G00718' => 'egut', 'MSTRG.21891' => 'ama', 'MSTRG.26910' => 'ama', 'MSTRG.4099' => 'ama', 'MSTRG.9925' => 'ama', 'Nitab4.5_0000165g0010' => 'nta', 'Nitab4.5_0000209g0180' => 'nta', 'Nitab4.5_0000244g0440' => 'nta', 'Nitab4.5_0000525g0220' => 'nta', 'Nitab4.5_0001597g0020' => 'nta', 'Nitab4.5_0001878g0040' => 'nta', 'Nitab4.5_0001878g0060' => 'nta', 'Nitab4.5_0002838g0100' => 'nta', 'Nitab4.5_0002838g0120' => 'nta', 'Nitab4.5_0004798g0030' => 'nta', 'Nitab4.5_0005420g0010' => 'nta', 'Nitab4.5_0005507g0010' => 'nta', 'Nitab4.5_0005574g0020' => 'nta', 'Nitab4.5_0005838g0010' => 'nta', 'Nitab4.5_0010580g0020' => 'nta', 'Nn1g02599' => 'nnu', 'Nn1g02608' => 'nnu', 'Nn3g17742' => 'nnu', 'Nn3g19534' => 'nnu', 'Nn3g19535' => 'nnu', 'Oeu008790.1' => 'oeu', 'Oeu008792.1' => 'oeu', 'Oeu032590.1' => 'oeu', 'Oeu035349.1' => 'oeu', 'Oeu049791.1' => 'oeu', 'Os01g0774500' => 'osa', 'Os03g0628800' => 'osa', 'Os03g0798600' => 'osa', 'Os05g0508800' => 'osa', 'Peaxi162Scf00036g02018' => 'pax', 'Peaxi162Scf00578g00032' => 'pax', 'Peaxi162Scf00578g00317' => 'pax', 'Peaxi162Scf00785g00114' => 'pax', 'Peaxi162Scf00813g00119' => 'pax', 'Peaxi162Scf00906g00227' => 'pax', 'PGR004G0875' => 'pgr', 'PGR004G2424' => 'pgr', 'PGR031G1239' => 'pgr', 'PGR031G2474' => 'pgr', 'PGR044G0423' => 'pgr', 'PGSC0003DMG400001128' => 'stu', 'PGSC0003DMG400007336' => 'stu', 'PGSC0003DMG400016318' => 'stu', 'PGSC0003DMG400016319' => 'stu', 'PGSC0003DMG400018074' => 'stu', 'Phvul.001G157700' => 'pvu', 'Phvul.002G148550' => 'pvu', 'Phvul.002G320200' => 'pvu', 'Phvul.003G089200' => 'pvu', 'Phvul.007G126000' => 'pvu', 'Phvul.007G126100' => 'pvu', 'Phvul.007G178000' => 'pvu', 'Phvul.007G178200' => 'pvu', 'Potri.002G043000' => 'ptr', 'Potri.002G043200' => 'ptr', 'Potri.003G123750' => 'ptr', 'Potri.005G055401' => 'ptr', 'Potri.005G219700' => 'ptr', 'Potri.005G220000' => 'ptr', 'Potri.008G161901' => 'ptr', 'Potri.008G162000' => 'ptr', 'Potri.008G162400' => 'ptr', 'Potri.010G076900' => 'ptr', 'Pp3c12_9180' => 'ppa', 'Pp3c13_19770' => 'ppa', 'Pp3c14_22950' => 'ppa', 'Pp3c16_12160' => 'ppa', 'Pp3c27_7820' => 'ppa', 'Pp3c2_3490' => 'ppa', 'Pp3c3_23700' => 'ppa', 'Pp3c3_36520' => 'ppa', 'Pp3c4_15250' => 'ppa', 'PRCOL_00007002' => 'pco', 'Prupe.1G030600' => 'ppe', 'Prupe.1G030700' => 'ppe', 'Prupe.6G345200' => 'ppe', 'Prupe.8G230300' => 'ppe', 'Prupe.8G230500' => 'ppe', 'Psat3g059600' => 'psa', 'Psat5g200920' => 'psa', 'Psat6g056440' => 'psa', 'Psat6g057360' => 'psa', 'Psat6g134120' => 'psa', 'Psat6g134160' => 'psa', 'Psat7g008640' => 'psa', 'Psat7g185240' => 'psa', 'PSO017G1330' => 'pso', 'PSO063G6097' => 'pso', 'PSO170G0835' => 'pso', 'PSO170G2499' => 'pso', 'PSO210G5058' => 'pso', 'PSO210G6154' => 'pso', 'PSO585G0031' => 'pso', 'PSO832G0264' => 'pso', 'PSO832G4288' => 'pso', 'QL03p027355' => 'qlo', 'QL03p027430' => 'qlo', 'QL04p081380' => 'qlo', 'QL06p015642' => 'qlo', 'QL06p015650' => 'qlo', 'QL06p015686' => 'qlo', 'QL12p042927' => 'qlo', 'QL93p1863_0035' => 'qlo', 'RcHm_v2.0_Chr3g0450581' => 'rch', 'RcHm_v2.0_Chr4g0390371' => 'rch', 'RcHm_v2.0_Chr4g0390381' => 'rch', 'RcHm_v2.0_Chr4g0390491' => 'rch', 'RcHm_v2.0_Chr4g0390501' => 'rch', 'RcHm_v2.0_Chr6g0289231' => 'rch', 'Rhsim04G0190400' => 'rsi', 'Rhsim04G0190500' => 'rsi', 'Rhsim04G0190600' => 'rsi', 'Rhsim13G0031400' => 'rsi', 'Rhsim13G0165600' => 'rsi', 'RhsimUnG0114600' => 'rsi', 'RhsimUnG0114700' => 'rsi', 'Sabra02G0034800' => 'sbr', 'Sabra02G0035100' => 'sbr', 'Sabra05G0168600' => 'sbr', 'Sabra05G0168800' => 'sbr', 'Sabra08G0123700' => 'sbr', 'Sabra10G0031900' => 'sbr', 'Sabra13G0039000' => 'sbr', 'SalBow2G0782' => 'sbo', 'SalBow2G1403' => 'sbo', 'SalBow4G0074' => 'sbo', 'SalBow4G2635' => 'sbo', 'SalBow5G3010' => 'sbo', 'Sc05g0000870' => 'sci', 'Sc05g0000890' => 'sci', 'Sc13g0005000' => 'sci', 'Sc13g0005030' => 'sci', 'Sc19g0003790' => 'sci', 'Sc19g0003800' => 'sci', 'Sed0003467' => 'sed', 'Sed0009355' => 'sed', 'Sed0009894' => 'sed', 'Sed0011972' => 'sed', 'Sed0021483' => 'sed', 'Sed0021750' => 'sed', 'Sed0026279' => 'sed', 'SEGI_05312' => 'sgi', 'SEGI_10112' => 'sgi', 'SEGI_15835' => 'sgi', 'SEGI_30386' => 'sgi', 'SEGI_34122' => 'sgi', 'SEGI_35063' => 'sgi', 'SGA_v2.0_scaffold101G29794' => 'sas', 'SGA_v2.0_scaffold1G00573' => 'sas', 'SGA_v2.0_scaffold79G25637' => 'sas', 'SGA_v2.0_scaffold88G27283' => 'sas', 'SGA_v2.0_scaffold88G27285' => 'sas', 'SGA_v2.0_scaffold88G27331' => 'sas', 'SHI09937' => 'shi', 'SMO119G0302' => 'smo', 'SMO137G0231' => 'smo', 'SMO367G1151' => 'smo', 'Solyc02g082000.3' => 'sly', 'Solyc06g031670.3' => 'sly', 'Solyc06g053810.3' => 'sly', 'Solyc07g025457.1' => 'sly', 'Solyc08g059740.1' => 'sly', 'Solyc08g059750.3' => 'sly', 'Solyc09g083370.3' => 'sly', 'Solyc12g038950.3' => 'sly', 'Sopen02g026630' => 'spe', 'Sopen06g018930' => 'spe', 'Sopen06g018940' => 'spe', 'Sopen08g009460' => 'spe', 'Sopen09g032290' => 'spe', 'Sp1g03080' => 'spa', 'Sp1g03090' => 'spa', 'Sp1g05480' => 'spa', 'Sp2g07860' => 'spa', 'Sp2g08430' => 'spa', 'Sp2g08440' => 'spa', 'Sp2g26200' => 'spa', 'Sp4g13170' => 'spa', 'Sp6g33840' => 'spa', 'SpUn1204_0010' => 'spa', 'TAR365G0908' => 'tar', 'TAR381G1270' => 'tar', 'TAR381G1651' => 'tar', 'TAR625G1131' => 'tar', 'TAR633G0962' => 'tar', 'TAR633G1729' => 'tar', 'TAR633G1864' => 'tar', 'TAR636G0221' => 'tar', 'TAR636G0314' => 'tar', 'TAR636G3202' => 'tar', 'THA.LOC104800805' => 'tha', 'THA.LOC104801096' => 'tha', 'THA.LOC104801555' => 'tha', 'THA.LOC104808491' => 'tha', 'THA.LOC104808595' => 'tha', 'THA.LOC104815985' => 'tha', 'THA.LOC104822250' => 'tha', 'THA.LOC104826071' => 'tha', 'Thecc.01G265200' => 'tca', 'Thecc.01G265300' => 'tca', 'Thecc.01G265700' => 'tca', 'Thecc.03G109100' => 'tca', 'Thecc.04G245900' => 'tca', 'Thecc.04G246000' => 'tca', 'Thhalv10003334m.g' => 'esa', 'Thhalv10005508m.g' => 'esa', 'Thhalv10005643m.g' => 'esa', 'Thhalv10007316m.g' => 'esa', 'Thhalv10009006m.g' => 'esa', 'Thhalv10009309m.g' => 'esa', 'Thhalv10014917m.g' => 'esa', 'Thhalv10014919m.g' => 'esa', 'Thhalv10015393m.g' => 'esa', 'Thhalv10016515m.g' => 'esa', 'Thhalv10029242m.g' => 'esa', 'TPR.G16654' => 'tpr', 'TPR.G20589' => 'tpr', 'TPR.G23029' => 'tpr', 'TPR.G27731' => 'tpr', 'TPR.G28889' => 'tpr', 'TPR.G28899' => 'tpr', 'TPR.G30846' => 'tpr', 'TPR.G5452' => 'tpr', 'TPR.G5713' => 'tpr', 'TPR.G9046' => 'tpr', 'TPR.G9061' => 'tpr', 'TWI09G1075' => 'twi', 'TWI12G0806' => 'twi', 'TWI18G0108' => 'twi', 'TWI53G1361' => 'twi', 'TWI73G0185' => 'twi', 'TWI73G0427' => 'twi', 'unitig_37.g12001' => 'ugi', 'unitig_747.g21660' => 'ugi', 'unitig_748.g7232' => 'ugi', 'unitig_748.g7315' => 'ugi', 'unitig_85.g27262' => 'ugi', 'unitig_92.g28220' => 'ugi', 'vmacro02632' => 'vma', 'vmacro08410' => 'vma', 'vmacro08411' => 'vma', 'vmacro15407' => 'vma', 'VMungo0251G3619' => 'vmu', 'VMungo0720G1204' => 'vmu', 'VMungo0720G1918' => 'vmu', 'VMungo0720G2387' => 'vmu', 'VMungo0720G2961' => 'vmu', 'VMungo1215G2154' => 'vmu', 'VMungo1383G2411' => 'vmu', 'Zm00001eb051130' => 'zma', 'Zm00001eb116830' => 'zma', 'Zm00001eb116850' => 'zma', 'Zm00001eb151740' => 'zma', 'Zm00001eb292360' => 'zma', 'Zm00001eb301640' => 'zma' ) $gf_id = 'HOM05D000856' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000856' ) $data_identifier = 'HOM05D000856' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 13, 'ath' => (int) 10, 'atr' => (int) 1, 'acertr' => (int) 8, 'cqu' => (int) 6, 'bca' => (int) 21, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 11, 'car' => (int) 9, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 8, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 5, 'fan' => (int) 16, 'fve' => (int) 6, 'gma' => (int) 11, 'ghi' => (int) 19, 'gra' => (int) 9, 'vvi' => (int) 7, 'han' => (int) 17, 'cav' => (int) 5, 'hma' => (int) 2, 'vpl' => (int) 2, 'sun' => (int) 7, 'lal' => (int) 9, 'lja' => (int) 5, 'lonja' => (int) 9, 'lsa' => (int) 5, 'mes' => (int) 8, 'mpo' => (int) 3, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 10, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 15, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 9, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 9, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 6, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 5, 'spa' => (int) 10, 'tar' => (int) 10, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 11, 'tpr' => (int) 11, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 4, 'vmu' => (int) 7, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb301640' $species_info = array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ) $local_species = 'fve' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000856', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p00010' => 'bna', 'A03p04160' => 'bna', 'A03p17160' => 'bna', 'A04p23370' => 'bna', 'A05p14860' => 'bna', 'A08p37020' => 'bna', 'A09p08050' => 'bna', 'A09p66800' => 'bna', 'A09p67940' => 'bna', 'A10p02680' => 'bna', 'A10p05320' => 'bna', 'Aa31LG1G20560' => 'aar', 'Aa31LG1G20610' => 'aar', 'Aa31LG1G7810' => 'aar', 'Aa31LG5G3590' => 'aar', 'Aa31LG5G6140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3819' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4683' => 'aag', 'Actinidia04480' => 'ach', 'Actinidia05466' => 'ach', 'Actinidia08445' => 'ach', 'Actinidia21170' => 'ach', 'Actinidia24812' => 'ach', 'Actinidia24951' => 'ach', 'Actinidia40088' => 'ach', 'Ah.02g111660' => 'amhyb', 'Ah.11g048900' => 'amhyb', 'Ah.11g049910' => 'amhyb', 'AL1G13870' => 'aly', 'AL1G13880' => 'aly', 'AL1G16760' => 'aly', 'AL390U10020' => 'aly', 'AL4G25520' => 'aly', 'AL6G19890' => 'aly', 'AL6G19900' => 'aly', 'AL6G19910' => 'aly', 'AL8G40100' => 'aly', 'Aqoxy2G03562' => 'aox', 'Aqoxy5G00316' => 'aox', 'Aqoxy5G00926' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1628KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1H403S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2FU6SJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.882I6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8YRY2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YN1SN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AF70II' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZA8L1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F916KL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHRD8H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KTZ8QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S22EMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8M29T' => 'arhy', 'AT1G04270' => 'ath', 'AT1G04280' => 'ath', 'AT1G06750' => 'ath', 'AT1G33850' => 'ath', 'AT2G30630' => 'ath', 'AT5G09490' => 'ath', 'AT5G09500' => 'ath', 'AT5G09510' => 'ath', 'AT5G43640' => 'ath', 'AT5G63070' => 'ath', 'ATR0605G315' => 'atr', 'Atru.chr11.175' => 'acertr', 'Atru.chr11.653' => 'acertr', 'Atru.chr3.1616' => 'acertr', 'Atru.chr4.2230' => 'acertr', 'Atru.chr4.2232' => 'acertr', 'Atru.chr5.1598' => 'acertr', 'Atru.chr5.1600' => 'acertr', 'Atru.chr5.2188' => 'acertr', 'AUR62008326' => 'cqu', 'AUR62011922' => 'cqu', 'AUR62011924' => 'cqu', 'AUR62021771' => 'cqu', 'AUR62032237' => 'cqu', 'AUR62032240' => 'cqu', 'BcaB01g05572' => 'bca', 'BcaB02g10337' => 'bca', 'BcaB04g19944' => 'bca', 'BcaB05g21548' => 'bca', 'BcaB05g21549' => 'bca', 'BcaB05g23227' => 'bca', 'BcaB06g26256' => 'bca', 'BcaB06g26257' => 'bca', 'BcaB06g28379' => 'bca', 'BcaC02g11159' => 'bca', 'BcaC03g13258' => 'bca', 'BcaC03g13259' => 'bca', 'BcaC05g24456' => 'bca', 'BcaC05g24457' => 'bca', 'BcaC07g36922' => 'bca', 'BcaC07g36923' => 'bca', 'BcaC07g42050' => 'bca', 'BcaC07g42176' => 'bca', 'BcaC07g42195' => 'bca', 'BcaC07g42196' => 'bca', 'BcaNung06674' => 'bca', 'BolC2t06351H' => 'bol', 'BolC2t06352H' => 'bol', 'BolC3t12993H' => 'bol', 'BolC4t23525H' => 'bol', 'BolC4t27475H' => 'bol', 'BolC5t29025H' => 'bol', 'BolC5t29026H' => 'bol', 'BolC8t46898H' => 'bol', 'BolC8t46899H' => 'bol', 'BolC8t52630H' => 'bol', 'BolC8t52765H' => 'bol', 'BolC9t53824H' => 'bol', 'BraA03t09760Z' => 'bra', 'BraA03t10990Z' => 'bra', 'BraA05t20413Z' => 'bra', 'BraA08t35602Z' => 'bra', 'BraA09t36458Z' => 'bra', 'BraA09t42018Z' => 'bra', 'BraA09t42129Z' => 'bra', 'BraA10t42536Z' => 'bra', 'BraA10t42537Z' => 'bra', 'C01p10690' => 'bna', 'C02p03890' => 'bna', 'C02p03900' => 'bna', 'C03p04620' => 'bna', 'C04p19870' => 'bna', 'C04p59670' => 'bna', 'C05p02460' => 'bna', 'C05p02470' => 'bna', 'C08p00980' => 'bna', 'C08p00990' => 'bna', 'C08p51030' => 'bna', 'C08p52360' => 'bna', 'C09p09120' => 'bna', 'CAN.G19.15' => 'can', 'CAN.G251.10' => 'can', 'CAN.G251.9' => 'can', 'CAN.G398.24' => 'can', 'CAN.G410.32' => 'can', 'CAN.G881.2' => 'can', 'CANSAT01G3025' => 'cansat', 'CANSAT78G1211' => 'cansat', 'CANSAT78G1218' => 'cansat', 'CANSAT78G1521' => 'cansat', 'CANSAT78G1670' => 'cansat', 'CARHR003600' => 'chi', 'CARHR003610' => 'chi', 'CARHR006290' => 'chi', 'CARHR006430' => 'chi', 'CARHR124110' => 'chi', 'CARHR203870' => 'chi', 'CARHR203880' => 'chi', 'CARHR203890' => 'chi', 'CARHR276880' => 'chi', 'Carub.0001s0346' => 'cru', 'Carub.0001s0347' => 'cru', 'Carub.0001s0607' => 'cru', 'Carub.0003s2768' => 'cru', 'Carub.0003s2769' => 'cru', 'Carub.0004s1178' => 'cru', 'Carub.0006s0806' => 'cru', 'Carub.0006s0807' => 'cru', 'Carub.0006s0808' => 'cru', 'Carub.0008s0501' => 'cru', 'Carub.0008s2379' => 'cru', 'Ca_08655_v3' => 'car', 'Ca_08922_v3' => 'car', 'Ca_08923_v3' => 'car', 'Ca_09119_v3' => 'car', 'Ca_09703_v3' => 'car', 'Ca_09705_v3' => 'car', 'Ca_09835_v3' => 'car', 'Ca_26403_v3' => 'car', 'Ca_30719_v3' => 'car', 'CBR_g17958' => 'cbr', 'CBR_g40516' => 'cbr', 'Cc00_g05350' => 'ccan', 'Cc01_g18690' => 'ccan', 'Cc03_g04830' => 'ccan', 'Cc03_g04850' => 'ccan', 'CDE02G4469' => 'cde', 'CDE06G0883' => 'cde', 'CDE06G1295' => 'cde', 'CDE06G1390' => 'cde', 'CDE07G0584' => 'cde', 'CDE07G1084' => 'cde', 'CDE08G1259' => 'cde', 'Cfa002341' => 'cfa', 'Cfa024337' => 'cfa', 'Ciclev10004749m.g' => 'ccl', 'Ciclev10006127m.g' => 'ccl', 'Ciclev10019720m.g' => 'ccl', 'Ciclev10022652m.g' => 'ccl', 'CiPaw.01G190400' => 'cil', 'CiPaw.01G190500' => 'cil', 'CiPaw.02G116400' => 'cil', 'CiPaw.02G116500' => 'cil', 'CiPaw.04G183000' => 'cil', 'CiPaw.04G183300' => 'cil', 'ClCG05G004610' => 'cla', 'ClCG05G004620' => 'cla', 'ClCG06G006730' => 'cla', 'ClCG06G006740' => 'cla', 'ClCG11G003690' => 'cla', 'COL.COLO4_08276' => 'col', 'COL.COLO4_08277' => 'col', 'COL.COLO4_15787' => 'col', 'COL.COLO4_15789' => 'col', 'Cpa.g.c44815' => 'cpa', 'Cpa.g.sc52.144' => 'cpa', 'Cpa.g.sc58.46' => 'cpa', 'Cpa.g.sc58.47' => 'cpa', 'Cre08.g360900' => 'cre', 'CsaV3_2G013030' => 'csa', 'CsaV3_2G013050' => 'csa', 'CsaV3_2G015620' => 'csa', 'CsaV3_3G012590' => 'csa', 'CsaV3_3G012600' => 'csa', 'CSS0001641' => 'camsi', 'CSS0008310' => 'camsi', 'CSS0013011' => 'camsi', 'CSS0017147' => 'camsi', 'CSS0022970' => 'camsi', 'CSS0025655' => 'camsi', 'CSS0028665' => 'camsi', 'CSS0029117' => 'camsi', 'CSS0032024' => 'camsi', 'CSS0039681' => 'camsi', 'CSS0046516' => 'camsi', 'CSS0050307' => 'camsi', 'DCAR_005871' => 'dca', 'DCAR_007342' => 'dca', 'DCAR_024228' => 'dca', 'DCAR_027277' => 'dca', 'DCAR_030718' => 'dca', 'Dinv20287' => 'din', 'Dinv22461' => 'din', 'Dinv22464' => 'din', 'Dinv29912' => 'din', 'Dinv29913' => 'din', 'Dinv34580' => 'din', 'Dinv34582' => 'din', 'Dinv44632' => 'din', 'Duzib052G0266' => 'dzi', 'Duzib133G0907' => 'dzi', 'Duzib133G1034' => 'dzi', 'Duzib138G0207' => 'dzi', 'Duzib138G0491' => 'dzi', 'Duzib151G0812' => 'dzi', 'Duzib151G1166' => 'dzi', 'Duzib168G0192' => 'dzi', 'Duzib211G0077' => 'dzi', 'Duzib212G0429' => 'dzi', 'Duzib212G0472' => 'dzi', 'ECA233G2617' => 'eca', 'ECA236G4188' => 'eca', 'ECA240G0936' => 'eca', 'ECA240G1129' => 'eca', 'ECA247G0623' => 'eca', 'EL10Ac5g10451' => 'bvu', 'EL10Ac5g10453' => 'bvu', 'EL10Ac5g10894' => 'bvu', 'Eucgr.H00192' => 'egr', 'Eucgr.H00193' => 'egr', 'Eucgr.H00194' => 'egr', 'Eucgr.J01562' => 'egr', 'Eucgr.K03301' => 'egr', 'FAN02G0632' => 'fan', 'FAN05G5378' => 'fan', 'FAN09G3247' => 'fan', 'FAN12G0435' => 'fan', 'FAN12G2426' => 'fan', 'FAN14G1707' => 'fan', 'FAN14G4725' => 'fan', 'FAN15G2071' => 'fan', 'FAN17G3065' => 'fan', 'FAN19G1376' => 'fan', 'FAN20G0354' => 'fan', 'FAN20G2429' => 'fan', 'FAN20G2658' => 'fan', 'FAN24G2343' => 'fan', 'FAN27G2362' => 'fan', 'FAN28G1765' => 'fan', 'FvH4_1g16020' => 'fve', 'FvH4_2g04890' => 'fve', 'FvH4_2g22270' => 'fve', 'FvH4_4g02630' => 'fve', 'FvH4_4g02640' => 'fve', 'FvH4_6g02650' => 'fve', 'Glyma.02G140600' => 'gma', 'Glyma.03G159900' => 'gma', 'Glyma.05G234800' => 'gma', 'Glyma.07G269600' => 'gma', 'Glyma.08G042300' => 'gma', 'Glyma.10G033500' => 'gma', 'Glyma.10G185200' => 'gma', 'Glyma.17G004300' => 'gma', 'Glyma.19G161900' => 'gma', 'Glyma.20G205100' => 'gma', 'Glyma.20G205200' => 'gma', 'Gohir.A01G139101' => 'ghi', 'Gohir.A02G035600' => 'ghi', 'Gohir.A02G117901' => 'ghi', 'Gohir.A07G210100' => 'ghi', 'Gohir.A07G210200' => 'ghi', 'Gohir.A08G061100' => 'ghi', 'Gohir.A09G223000' => 'ghi', 'Gohir.A09G223100' => 'ghi', 'Gohir.A10G113900' => 'ghi', 'Gohir.A10G114000' => 'ghi', 'Gohir.D02G042300' => 'ghi', 'Gohir.D07G216100' => 'ghi', 'Gohir.D07G216200' => 'ghi', 'Gohir.D08G070400' => 'ghi', 'Gohir.D09G225000' => 'ghi', 'Gohir.D09G225100' => 'ghi', 'Gohir.D10G152300' => 'ghi', 'Gohir.D10G153200' => 'ghi', 'Gohir.D11G133701' => 'ghi', 'Gorai.004G074100' => 'gra', 'Gorai.005G046800' => 'gra', 'Gorai.006G246500' => 'gra', 'Gorai.006G246600' => 'gra', 'Gorai.007G142900' => 'gra', 'Gorai.011G171000' => 'gra', 'Gorai.011G171100' => 'gra', 'Gorai.013G104300' => 'gra', 'Gorai.013G104400' => 'gra', 'GSVIVG01000754001' => 'vvi', 'GSVIVG01000756001' => 'vvi', 'GSVIVG01010903001' => 'vvi', 'GSVIVG01017623001' => 'vvi', 'GSVIVG01018113001' => 'vvi', 'GSVIVG01018116001' => 'vvi', 'GSVIVG01018118001' => 'vvi', 'HanXRQChr03g0076211' => 'han', 'HanXRQChr03g0092431' => 'han', 'HanXRQChr03g0092441' => 'han', 'HanXRQChr03g0092591' => 'han', 'HanXRQChr03g0092671' => 'han', 'HanXRQChr03g0092681' => 'han', 'HanXRQChr03g0092691' => 'han', 'HanXRQChr03g0092701' => 'han', 'HanXRQChr03g0092721' => 'han', 'HanXRQChr03g0092731' => 'han', 'HanXRQChr04g0113681' => 'han', 'HanXRQChr10g0281371' => 'han', 'HanXRQChr11g0337141' => 'han', 'HanXRQChr13g0424521' => 'han', 'HanXRQChr13g0424531' => 'han', 'HanXRQChr13g0424541' => 'han', 'HanXRQChr16g0498221' => 'han', 'Haze_04377' => 'cav', 'Haze_11298' => 'cav', 'Haze_24547' => 'cav', 'Haze_24550' => 'cav', 'Haze_26587' => 'cav', 'Hma1.2p1_0650F.1_g195410' => 'hma', 'Hma1.2p1_0893F.1_g233470' => 'hma', 'HPP92_006508' => 'vpl', 'HPP92_024780' => 'vpl', 'Hund02688' => 'sun', 'Hund09380' => 'sun', 'Hund09381' => 'sun', 'Hund09832' => 'sun', 'Hund09833' => 'sun', 'Hund11351' => 'sun', 'Hund11513' => 'sun', 'Lalb_Chr06g0162591' => 'lal', 'Lalb_Chr06g0162601' => 'lal', 'Lalb_Chr06g0169321' => 'lal', 'Lalb_Chr09g0330951' => 'lal', 'Lalb_Chr16g0387631' => 'lal', 'Lalb_Chr21g0306241' => 'lal', 'Lalb_Chr25g0290051' => 'lal', 'Lalb_Chr25g0290061' => 'lal', 'Lalb_Chr25g0290071' => 'lal', 'Lj1g0003876' => 'lja', 'Lj1P1207T36' => 'lonja', 'Lj2C1156G12' => 'lonja', 'Lj3A793G39' => 'lonja', 'Lj3C580G2' => 'lonja', 'Lj3C780G2' => 'lonja', 'Lj3C780T4' => 'lonja', 'Lj3C793G9' => 'lonja', 'Lj4g0012960' => 'lja', 'Lj5g0021252' => 'lja', 'Lj5g0021484' => 'lja', 'Lj5g0024528' => 'lja', 'Lj6A399T12' => 'lonja', 'Lj6A656G65' => 'lonja', 'Lsat_1_v5_gn_3_125500' => 'lsa', 'Lsat_1_v5_gn_3_125540' => 'lsa', 'Lsat_1_v5_gn_5_72701' => 'lsa', 'Lsat_1_v5_gn_8_91560' => 'lsa', 'Lsat_1_v5_gn_9_9640' => 'lsa', 'Manes.01G200600' => 'mes', 'Manes.01G200700' => 'mes', 'Manes.03G168900' => 'mes', 'Manes.03G169000' => 'mes', 'Manes.05G085801' => 'mes', 'Manes.05G086200' => 'mes', 'Manes.15G036700' => 'mes', 'Manes.15G036900' => 'mes', 'Mapoly0004s0172' => 'mpo', 'Mapoly0023s0001' => 'mpo', 'Mapoly0142s0012' => 'mpo', 'MBI01_g32854_MAGBIO' => 'mbi', 'MBI11_g24427_MAGBIO' => 'mbi', 'MBI11_g47319_MAGBIO' => 'mbi', 'MCO01G433' => 'mco', 'MD00G1187800' => 'mdo', 'MD04G1226500' => 'mdo', 'MD05G1203900' => 'mdo', 'MD10G1191100' => 'mdo', 'MD12G1243500' => 'mdo', 'MD13G1207000' => 'mdo', 'MD13G1207100' => 'mdo', 'MD16G1208600' => 'mdo', 'Medtr1g050352' => 'mtr', 'Medtr1g070385' => 'mtr', 'Medtr1g070450' => 'mtr', 'Medtr1g075200' => 'mtr', 'Medtr1g075250' => 'mtr', 'Medtr1g075260' => 'mtr', 'Medtr1g475250' => 'mtr', 'Medtr4g075450' => 'mtr', 'Medtr7g096300' => 'mtr', 'Medtr8g105110' => 'mtr', 'MELO3C006470.2' => 'cme', 'MELO3C006471.2' => 'cme', 'MELO3C020772.2' => 'cme', 'MELO3C026780.2' => 'cme', 'MELO3C026781.2' => 'cme', 'Migut.D00390' => 'egut', 'Migut.G00435' => 'egut', 'Migut.G00436' => 'egut', 'Migut.G00718' => 'egut', 'MSTRG.21891' => 'ama', 'MSTRG.26910' => 'ama', 'MSTRG.4099' => 'ama', 'MSTRG.9925' => 'ama', 'Nitab4.5_0000165g0010' => 'nta', 'Nitab4.5_0000209g0180' => 'nta', 'Nitab4.5_0000244g0440' => 'nta', 'Nitab4.5_0000525g0220' => 'nta', 'Nitab4.5_0001597g0020' => 'nta', 'Nitab4.5_0001878g0040' => 'nta', 'Nitab4.5_0001878g0060' => 'nta', 'Nitab4.5_0002838g0100' => 'nta', 'Nitab4.5_0002838g0120' => 'nta', 'Nitab4.5_0004798g0030' => 'nta', 'Nitab4.5_0005420g0010' => 'nta', 'Nitab4.5_0005507g0010' => 'nta', 'Nitab4.5_0005574g0020' => 'nta', 'Nitab4.5_0005838g0010' => 'nta', 'Nitab4.5_0010580g0020' => 'nta', 'Nn1g02599' => 'nnu', 'Nn1g02608' => 'nnu', 'Nn3g17742' => 'nnu', 'Nn3g19534' => 'nnu', 'Nn3g19535' => 'nnu', 'Oeu008790.1' => 'oeu', 'Oeu008792.1' => 'oeu', 'Oeu032590.1' => 'oeu', 'Oeu035349.1' => 'oeu', 'Oeu049791.1' => 'oeu', 'Os01g0774500' => 'osa', 'Os03g0628800' => 'osa', 'Os03g0798600' => 'osa', 'Os05g0508800' => 'osa', 'Peaxi162Scf00036g02018' => 'pax', 'Peaxi162Scf00578g00032' => 'pax', 'Peaxi162Scf00578g00317' => 'pax', 'Peaxi162Scf00785g00114' => 'pax', 'Peaxi162Scf00813g00119' => 'pax', 'Peaxi162Scf00906g00227' => 'pax', 'PGR004G0875' => 'pgr', 'PGR004G2424' => 'pgr', 'PGR031G1239' => 'pgr', 'PGR031G2474' => 'pgr', 'PGR044G0423' => 'pgr', 'PGSC0003DMG400001128' => 'stu', 'PGSC0003DMG400007336' => 'stu', 'PGSC0003DMG400016318' => 'stu', 'PGSC0003DMG400016319' => 'stu', 'PGSC0003DMG400018074' => 'stu', 'Phvul.001G157700' => 'pvu', 'Phvul.002G148550' => 'pvu', 'Phvul.002G320200' => 'pvu', 'Phvul.003G089200' => 'pvu', 'Phvul.007G126000' => 'pvu', 'Phvul.007G126100' => 'pvu', 'Phvul.007G178000' => 'pvu', 'Phvul.007G178200' => 'pvu', 'Potri.002G043000' => 'ptr', 'Potri.002G043200' => 'ptr', 'Potri.003G123750' => 'ptr', 'Potri.005G055401' => 'ptr', 'Potri.005G219700' => 'ptr', 'Potri.005G220000' => 'ptr', 'Potri.008G161901' => 'ptr', 'Potri.008G162000' => 'ptr', 'Potri.008G162400' => 'ptr', 'Potri.010G076900' => 'ptr', 'Pp3c12_9180' => 'ppa', 'Pp3c13_19770' => 'ppa', 'Pp3c14_22950' => 'ppa', 'Pp3c16_12160' => 'ppa', 'Pp3c27_7820' => 'ppa', 'Pp3c2_3490' => 'ppa', 'Pp3c3_23700' => 'ppa', 'Pp3c3_36520' => 'ppa', 'Pp3c4_15250' => 'ppa', 'PRCOL_00007002' => 'pco', 'Prupe.1G030600' => 'ppe', 'Prupe.1G030700' => 'ppe', 'Prupe.6G345200' => 'ppe', 'Prupe.8G230300' => 'ppe', 'Prupe.8G230500' => 'ppe', 'Psat3g059600' => 'psa', 'Psat5g200920' => 'psa', 'Psat6g056440' => 'psa', 'Psat6g057360' => 'psa', 'Psat6g134120' => 'psa', 'Psat6g134160' => 'psa', 'Psat7g008640' => 'psa', 'Psat7g185240' => 'psa', 'PSO017G1330' => 'pso', 'PSO063G6097' => 'pso', 'PSO170G0835' => 'pso', 'PSO170G2499' => 'pso', 'PSO210G5058' => 'pso', 'PSO210G6154' => 'pso', 'PSO585G0031' => 'pso', 'PSO832G0264' => 'pso', 'PSO832G4288' => 'pso', 'QL03p027355' => 'qlo', 'QL03p027430' => 'qlo', 'QL04p081380' => 'qlo', 'QL06p015642' => 'qlo', 'QL06p015650' => 'qlo', 'QL06p015686' => 'qlo', 'QL12p042927' => 'qlo', 'QL93p1863_0035' => 'qlo', 'RcHm_v2.0_Chr3g0450581' => 'rch', 'RcHm_v2.0_Chr4g0390371' => 'rch', 'RcHm_v2.0_Chr4g0390381' => 'rch', 'RcHm_v2.0_Chr4g0390491' => 'rch', 'RcHm_v2.0_Chr4g0390501' => 'rch', 'RcHm_v2.0_Chr6g0289231' => 'rch', 'Rhsim04G0190400' => 'rsi', 'Rhsim04G0190500' => 'rsi', 'Rhsim04G0190600' => 'rsi', 'Rhsim13G0031400' => 'rsi', 'Rhsim13G0165600' => 'rsi', 'RhsimUnG0114600' => 'rsi', 'RhsimUnG0114700' => 'rsi', 'Sabra02G0034800' => 'sbr', 'Sabra02G0035100' => 'sbr', 'Sabra05G0168600' => 'sbr', 'Sabra05G0168800' => 'sbr', 'Sabra08G0123700' => 'sbr', 'Sabra10G0031900' => 'sbr', 'Sabra13G0039000' => 'sbr', 'SalBow2G0782' => 'sbo', 'SalBow2G1403' => 'sbo', 'SalBow4G0074' => 'sbo', 'SalBow4G2635' => 'sbo', 'SalBow5G3010' => 'sbo', 'Sc05g0000870' => 'sci', 'Sc05g0000890' => 'sci', 'Sc13g0005000' => 'sci', 'Sc13g0005030' => 'sci', 'Sc19g0003790' => 'sci', 'Sc19g0003800' => 'sci', 'Sed0003467' => 'sed', 'Sed0009355' => 'sed', 'Sed0009894' => 'sed', 'Sed0011972' => 'sed', 'Sed0021483' => 'sed', 'Sed0021750' => 'sed', 'Sed0026279' => 'sed', 'SEGI_05312' => 'sgi', 'SEGI_10112' => 'sgi', 'SEGI_15835' => 'sgi', 'SEGI_30386' => 'sgi', 'SEGI_34122' => 'sgi', 'SEGI_35063' => 'sgi', 'SGA_v2.0_scaffold101G29794' => 'sas', 'SGA_v2.0_scaffold1G00573' => 'sas', 'SGA_v2.0_scaffold79G25637' => 'sas', 'SGA_v2.0_scaffold88G27283' => 'sas', 'SGA_v2.0_scaffold88G27285' => 'sas', 'SGA_v2.0_scaffold88G27331' => 'sas', 'SHI09937' => 'shi', 'SMO119G0302' => 'smo', 'SMO137G0231' => 'smo', 'SMO367G1151' => 'smo', 'Solyc02g082000.3' => 'sly', 'Solyc06g031670.3' => 'sly', 'Solyc06g053810.3' => 'sly', 'Solyc07g025457.1' => 'sly', 'Solyc08g059740.1' => 'sly', 'Solyc08g059750.3' => 'sly', 'Solyc09g083370.3' => 'sly', 'Solyc12g038950.3' => 'sly', 'Sopen02g026630' => 'spe', 'Sopen06g018930' => 'spe', 'Sopen06g018940' => 'spe', 'Sopen08g009460' => 'spe', 'Sopen09g032290' => 'spe', 'Sp1g03080' => 'spa', 'Sp1g03090' => 'spa', 'Sp1g05480' => 'spa', 'Sp2g07860' => 'spa', 'Sp2g08430' => 'spa', 'Sp2g08440' => 'spa', 'Sp2g26200' => 'spa', 'Sp4g13170' => 'spa', 'Sp6g33840' => 'spa', 'SpUn1204_0010' => 'spa', 'TAR365G0908' => 'tar', 'TAR381G1270' => 'tar', 'TAR381G1651' => 'tar', 'TAR625G1131' => 'tar', 'TAR633G0962' => 'tar', 'TAR633G1729' => 'tar', 'TAR633G1864' => 'tar', 'TAR636G0221' => 'tar', 'TAR636G0314' => 'tar', 'TAR636G3202' => 'tar', 'THA.LOC104800805' => 'tha', 'THA.LOC104801096' => 'tha', 'THA.LOC104801555' => 'tha', 'THA.LOC104808491' => 'tha', 'THA.LOC104808595' => 'tha', 'THA.LOC104815985' => 'tha', 'THA.LOC104822250' => 'tha', 'THA.LOC104826071' => 'tha', 'Thecc.01G265200' => 'tca', 'Thecc.01G265300' => 'tca', 'Thecc.01G265700' => 'tca', 'Thecc.03G109100' => 'tca', 'Thecc.04G245900' => 'tca', 'Thecc.04G246000' => 'tca', 'Thhalv10003334m.g' => 'esa', 'Thhalv10005508m.g' => 'esa', 'Thhalv10005643m.g' => 'esa', 'Thhalv10007316m.g' => 'esa', 'Thhalv10009006m.g' => 'esa', 'Thhalv10009309m.g' => 'esa', 'Thhalv10014917m.g' => 'esa', 'Thhalv10014919m.g' => 'esa', 'Thhalv10015393m.g' => 'esa', 'Thhalv10016515m.g' => 'esa', 'Thhalv10029242m.g' => 'esa', 'TPR.G16654' => 'tpr', 'TPR.G20589' => 'tpr', 'TPR.G23029' => 'tpr', 'TPR.G27731' => 'tpr', 'TPR.G28889' => 'tpr', 'TPR.G28899' => 'tpr', 'TPR.G30846' => 'tpr', 'TPR.G5452' => 'tpr', 'TPR.G5713' => 'tpr', 'TPR.G9046' => 'tpr', 'TPR.G9061' => 'tpr', 'TWI09G1075' => 'twi', 'TWI12G0806' => 'twi', 'TWI18G0108' => 'twi', 'TWI53G1361' => 'twi', 'TWI73G0185' => 'twi', 'TWI73G0427' => 'twi', 'unitig_37.g12001' => 'ugi', 'unitig_747.g21660' => 'ugi', 'unitig_748.g7232' => 'ugi', 'unitig_748.g7315' => 'ugi', 'unitig_85.g27262' => 'ugi', 'unitig_92.g28220' => 'ugi', 'vmacro02632' => 'vma', 'vmacro08410' => 'vma', 'vmacro08411' => 'vma', 'vmacro15407' => 'vma', 'VMungo0251G3619' => 'vmu', 'VMungo0720G1204' => 'vmu', 'VMungo0720G1918' => 'vmu', 'VMungo0720G2387' => 'vmu', 'VMungo0720G2961' => 'vmu', 'VMungo1215G2154' => 'vmu', 'VMungo1383G2411' => 'vmu', 'Zm00001eb051130' => 'zma', 'Zm00001eb116830' => 'zma', 'Zm00001eb116850' => 'zma', 'Zm00001eb151740' => 'zma', 'Zm00001eb292360' => 'zma', 'Zm00001eb301640' => 'zma' ), 'gf_id' => 'HOM05D000856', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000856' ), 'data_identifier' => 'HOM05D000856', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000856', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p00010' => 'bna', 'A03p04160' => 'bna', 'A03p17160' => 'bna', 'A04p23370' => 'bna', 'A05p14860' => 'bna', 'A08p37020' => 'bna', 'A09p08050' => 'bna', 'A09p66800' => 'bna', 'A09p67940' => 'bna', 'A10p02680' => 'bna', 'A10p05320' => 'bna', 'Aa31LG1G20560' => 'aar', 'Aa31LG1G20610' => 'aar', 'Aa31LG1G7810' => 'aar', 'Aa31LG5G3590' => 'aar', 'Aa31LG5G6140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3819' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4683' => 'aag', 'Actinidia04480' => 'ach', 'Actinidia05466' => 'ach', 'Actinidia08445' => 'ach', 'Actinidia21170' => 'ach', 'Actinidia24812' => 'ach', 'Actinidia24951' => 'ach', 'Actinidia40088' => 'ach', 'Ah.02g111660' => 'amhyb', 'Ah.11g048900' => 'amhyb', 'Ah.11g049910' => 'amhyb', 'AL1G13870' => 'aly', 'AL1G13880' => 'aly', 'AL1G16760' => 'aly', 'AL390U10020' => 'aly', 'AL4G25520' => 'aly', 'AL6G19890' => 'aly', 'AL6G19900' => 'aly', 'AL6G19910' => 'aly', 'AL8G40100' => 'aly', 'Aqoxy2G03562' => 'aox', 'Aqoxy5G00316' => 'aox', 'Aqoxy5G00926' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1628KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1H403S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2FU6SJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.882I6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8YRY2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YN1SN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AF70II' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZA8L1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F916KL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHRD8H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KTZ8QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S22EMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8M29T' => 'arhy', 'AT1G04270' => 'ath', 'AT1G04280' => 'ath', 'AT1G06750' => 'ath', 'AT1G33850' => 'ath', 'AT2G30630' => 'ath', 'AT5G09490' => 'ath', 'AT5G09500' => 'ath', 'AT5G09510' => 'ath', 'AT5G43640' => 'ath', 'AT5G63070' => 'ath', 'ATR0605G315' => 'atr', 'Atru.chr11.175' => 'acertr', 'Atru.chr11.653' => 'acertr', 'Atru.chr3.1616' => 'acertr', 'Atru.chr4.2230' => 'acertr', 'Atru.chr4.2232' => 'acertr', 'Atru.chr5.1598' => 'acertr', 'Atru.chr5.1600' => 'acertr', 'Atru.chr5.2188' => 'acertr', 'AUR62008326' => 'cqu', 'AUR62011922' => 'cqu', 'AUR62011924' => 'cqu', 'AUR62021771' => 'cqu', 'AUR62032237' => 'cqu', 'AUR62032240' => 'cqu', 'BcaB01g05572' => 'bca', 'BcaB02g10337' => 'bca', 'BcaB04g19944' => 'bca', 'BcaB05g21548' => 'bca', 'BcaB05g21549' => 'bca', 'BcaB05g23227' => 'bca', 'BcaB06g26256' => 'bca', 'BcaB06g26257' => 'bca', 'BcaB06g28379' => 'bca', 'BcaC02g11159' => 'bca', 'BcaC03g13258' => 'bca', 'BcaC03g13259' => 'bca', 'BcaC05g24456' => 'bca', 'BcaC05g24457' => 'bca', 'BcaC07g36922' => 'bca', 'BcaC07g36923' => 'bca', 'BcaC07g42050' => 'bca', 'BcaC07g42176' => 'bca', 'BcaC07g42195' => 'bca', 'BcaC07g42196' => 'bca', 'BcaNung06674' => 'bca', 'BolC2t06351H' => 'bol', 'BolC2t06352H' => 'bol', 'BolC3t12993H' => 'bol', 'BolC4t23525H' => 'bol', 'BolC4t27475H' => 'bol', 'BolC5t29025H' => 'bol', 'BolC5t29026H' => 'bol', 'BolC8t46898H' => 'bol', 'BolC8t46899H' => 'bol', 'BolC8t52630H' => 'bol', 'BolC8t52765H' => 'bol', 'BolC9t53824H' => 'bol', 'BraA03t09760Z' => 'bra', 'BraA03t10990Z' => 'bra', 'BraA05t20413Z' => 'bra', 'BraA08t35602Z' => 'bra', 'BraA09t36458Z' => 'bra', 'BraA09t42018Z' => 'bra', 'BraA09t42129Z' => 'bra', 'BraA10t42536Z' => 'bra', 'BraA10t42537Z' => 'bra', 'C01p10690' => 'bna', 'C02p03890' => 'bna', 'C02p03900' => 'bna', 'C03p04620' => 'bna', 'C04p19870' => 'bna', 'C04p59670' => 'bna', 'C05p02460' => 'bna', 'C05p02470' => 'bna', 'C08p00980' => 'bna', 'C08p00990' => 'bna', 'C08p51030' => 'bna', 'C08p52360' => 'bna', 'C09p09120' => 'bna', 'CAN.G19.15' => 'can', 'CAN.G251.10' => 'can', 'CAN.G251.9' => 'can', 'CAN.G398.24' => 'can', 'CAN.G410.32' => 'can', 'CAN.G881.2' => 'can', 'CANSAT01G3025' => 'cansat', 'CANSAT78G1211' => 'cansat', 'CANSAT78G1218' => 'cansat', 'CANSAT78G1521' => 'cansat', 'CANSAT78G1670' => 'cansat', 'CARHR003600' => 'chi', 'CARHR003610' => 'chi', 'CARHR006290' => 'chi', 'CARHR006430' => 'chi', 'CARHR124110' => 'chi', 'CARHR203870' => 'chi', 'CARHR203880' => 'chi', 'CARHR203890' => 'chi', 'CARHR276880' => 'chi', 'Carub.0001s0346' => 'cru', 'Carub.0001s0347' => 'cru', 'Carub.0001s0607' => 'cru', 'Carub.0003s2768' => 'cru', 'Carub.0003s2769' => 'cru', 'Carub.0004s1178' => 'cru', 'Carub.0006s0806' => 'cru', 'Carub.0006s0807' => 'cru', 'Carub.0006s0808' => 'cru', 'Carub.0008s0501' => 'cru', 'Carub.0008s2379' => 'cru', 'Ca_08655_v3' => 'car', 'Ca_08922_v3' => 'car', 'Ca_08923_v3' => 'car', 'Ca_09119_v3' => 'car', 'Ca_09703_v3' => 'car', 'Ca_09705_v3' => 'car', 'Ca_09835_v3' => 'car', 'Ca_26403_v3' => 'car', 'Ca_30719_v3' => 'car', 'CBR_g17958' => 'cbr', 'CBR_g40516' => 'cbr', 'Cc00_g05350' => 'ccan', 'Cc01_g18690' => 'ccan', 'Cc03_g04830' => 'ccan', 'Cc03_g04850' => 'ccan', 'CDE02G4469' => 'cde', 'CDE06G0883' => 'cde', 'CDE06G1295' => 'cde', 'CDE06G1390' => 'cde', 'CDE07G0584' => 'cde', 'CDE07G1084' => 'cde', 'CDE08G1259' => 'cde', 'Cfa002341' => 'cfa', 'Cfa024337' => 'cfa', 'Ciclev10004749m.g' => 'ccl', 'Ciclev10006127m.g' => 'ccl', 'Ciclev10019720m.g' => 'ccl', 'Ciclev10022652m.g' => 'ccl', 'CiPaw.01G190400' => 'cil', 'CiPaw.01G190500' => 'cil', 'CiPaw.02G116400' => 'cil', 'CiPaw.02G116500' => 'cil', 'CiPaw.04G183000' => 'cil', 'CiPaw.04G183300' => 'cil', 'ClCG05G004610' => 'cla', 'ClCG05G004620' => 'cla', 'ClCG06G006730' => 'cla', 'ClCG06G006740' => 'cla', 'ClCG11G003690' => 'cla', 'COL.COLO4_08276' => 'col', 'COL.COLO4_08277' => 'col', 'COL.COLO4_15787' => 'col', 'COL.COLO4_15789' => 'col', 'Cpa.g.c44815' => 'cpa', 'Cpa.g.sc52.144' => 'cpa', 'Cpa.g.sc58.46' => 'cpa', 'Cpa.g.sc58.47' => 'cpa', 'Cre08.g360900' => 'cre', 'CsaV3_2G013030' => 'csa', 'CsaV3_2G013050' => 'csa', 'CsaV3_2G015620' => 'csa', 'CsaV3_3G012590' => 'csa', 'CsaV3_3G012600' => 'csa', 'CSS0001641' => 'camsi', 'CSS0008310' => 'camsi', 'CSS0013011' => 'camsi', 'CSS0017147' => 'camsi', 'CSS0022970' => 'camsi', 'CSS0025655' => 'camsi', 'CSS0028665' => 'camsi', 'CSS0029117' => 'camsi', 'CSS0032024' => 'camsi', 'CSS0039681' => 'camsi', 'CSS0046516' => 'camsi', 'CSS0050307' => 'camsi', 'DCAR_005871' => 'dca', 'DCAR_007342' => 'dca', 'DCAR_024228' => 'dca', 'DCAR_027277' => 'dca', 'DCAR_030718' => 'dca', 'Dinv20287' => 'din', 'Dinv22461' => 'din', 'Dinv22464' => 'din', 'Dinv29912' => 'din', 'Dinv29913' => 'din', 'Dinv34580' => 'din', 'Dinv34582' => 'din', 'Dinv44632' => 'din', 'Duzib052G0266' => 'dzi', 'Duzib133G0907' => 'dzi', 'Duzib133G1034' => 'dzi', 'Duzib138G0207' => 'dzi', 'Duzib138G0491' => 'dzi', 'Duzib151G0812' => 'dzi', 'Duzib151G1166' => 'dzi', 'Duzib168G0192' => 'dzi', 'Duzib211G0077' => 'dzi', 'Duzib212G0429' => 'dzi', 'Duzib212G0472' => 'dzi', 'ECA233G2617' => 'eca', 'ECA236G4188' => 'eca', 'ECA240G0936' => 'eca', 'ECA240G1129' => 'eca', 'ECA247G0623' => 'eca', 'EL10Ac5g10451' => 'bvu', 'EL10Ac5g10453' => 'bvu', 'EL10Ac5g10894' => 'bvu', 'Eucgr.H00192' => 'egr', 'Eucgr.H00193' => 'egr', 'Eucgr.H00194' => 'egr', 'Eucgr.J01562' => 'egr', 'Eucgr.K03301' => 'egr', 'FAN02G0632' => 'fan', 'FAN05G5378' => 'fan', 'FAN09G3247' => 'fan', 'FAN12G0435' => 'fan', 'FAN12G2426' => 'fan', 'FAN14G1707' => 'fan', 'FAN14G4725' => 'fan', 'FAN15G2071' => 'fan', 'FAN17G3065' => 'fan', 'FAN19G1376' => 'fan', 'FAN20G0354' => 'fan', 'FAN20G2429' => 'fan', 'FAN20G2658' => 'fan', 'FAN24G2343' => 'fan', 'FAN27G2362' => 'fan', 'FAN28G1765' => 'fan', 'FvH4_1g16020' => 'fve', 'FvH4_2g04890' => 'fve', 'FvH4_2g22270' => 'fve', 'FvH4_4g02630' => 'fve', 'FvH4_4g02640' => 'fve', 'FvH4_6g02650' => 'fve', 'Glyma.02G140600' => 'gma', 'Glyma.03G159900' => 'gma', 'Glyma.05G234800' => 'gma', 'Glyma.07G269600' => 'gma', 'Glyma.08G042300' => 'gma', 'Glyma.10G033500' => 'gma', 'Glyma.10G185200' => 'gma', 'Glyma.17G004300' => 'gma', 'Glyma.19G161900' => 'gma', 'Glyma.20G205100' => 'gma', 'Glyma.20G205200' => 'gma', 'Gohir.A01G139101' => 'ghi', 'Gohir.A02G035600' => 'ghi', 'Gohir.A02G117901' => 'ghi', 'Gohir.A07G210100' => 'ghi', 'Gohir.A07G210200' => 'ghi', 'Gohir.A08G061100' => 'ghi', 'Gohir.A09G223000' => 'ghi', 'Gohir.A09G223100' => 'ghi', 'Gohir.A10G113900' => 'ghi', 'Gohir.A10G114000' => 'ghi', 'Gohir.D02G042300' => 'ghi', 'Gohir.D07G216100' => 'ghi', 'Gohir.D07G216200' => 'ghi', 'Gohir.D08G070400' => 'ghi', 'Gohir.D09G225000' => 'ghi', 'Gohir.D09G225100' => 'ghi', 'Gohir.D10G152300' => 'ghi', 'Gohir.D10G153200' => 'ghi', 'Gohir.D11G133701' => 'ghi', 'Gorai.004G074100' => 'gra', 'Gorai.005G046800' => 'gra', 'Gorai.006G246500' => 'gra', 'Gorai.006G246600' => 'gra', 'Gorai.007G142900' => 'gra', 'Gorai.011G171000' => 'gra', 'Gorai.011G171100' => 'gra', 'Gorai.013G104300' => 'gra', 'Gorai.013G104400' => 'gra', 'GSVIVG01000754001' => 'vvi', 'GSVIVG01000756001' => 'vvi', 'GSVIVG01010903001' => 'vvi', 'GSVIVG01017623001' => 'vvi', 'GSVIVG01018113001' => 'vvi', 'GSVIVG01018116001' => 'vvi', 'GSVIVG01018118001' => 'vvi', 'HanXRQChr03g0076211' => 'han', 'HanXRQChr03g0092431' => 'han', 'HanXRQChr03g0092441' => 'han', 'HanXRQChr03g0092591' => 'han', 'HanXRQChr03g0092671' => 'han', 'HanXRQChr03g0092681' => 'han', 'HanXRQChr03g0092691' => 'han', 'HanXRQChr03g0092701' => 'han', 'HanXRQChr03g0092721' => 'han', 'HanXRQChr03g0092731' => 'han', 'HanXRQChr04g0113681' => 'han', 'HanXRQChr10g0281371' => 'han', 'HanXRQChr11g0337141' => 'han', 'HanXRQChr13g0424521' => 'han', 'HanXRQChr13g0424531' => 'han', 'HanXRQChr13g0424541' => 'han', 'HanXRQChr16g0498221' => 'han', 'Haze_04377' => 'cav', 'Haze_11298' => 'cav', 'Haze_24547' => 'cav', 'Haze_24550' => 'cav', 'Haze_26587' => 'cav', 'Hma1.2p1_0650F.1_g195410' => 'hma', 'Hma1.2p1_0893F.1_g233470' => 'hma', 'HPP92_006508' => 'vpl', 'HPP92_024780' => 'vpl', 'Hund02688' => 'sun', 'Hund09380' => 'sun', 'Hund09381' => 'sun', 'Hund09832' => 'sun', 'Hund09833' => 'sun', 'Hund11351' => 'sun', 'Hund11513' => 'sun', 'Lalb_Chr06g0162591' => 'lal', 'Lalb_Chr06g0162601' => 'lal', 'Lalb_Chr06g0169321' => 'lal', 'Lalb_Chr09g0330951' => 'lal', 'Lalb_Chr16g0387631' => 'lal', 'Lalb_Chr21g0306241' => 'lal', 'Lalb_Chr25g0290051' => 'lal', 'Lalb_Chr25g0290061' => 'lal', 'Lalb_Chr25g0290071' => 'lal', 'Lj1g0003876' => 'lja', 'Lj1P1207T36' => 'lonja', 'Lj2C1156G12' => 'lonja', 'Lj3A793G39' => 'lonja', 'Lj3C580G2' => 'lonja', 'Lj3C780G2' => 'lonja', 'Lj3C780T4' => 'lonja', 'Lj3C793G9' => 'lonja', 'Lj4g0012960' => 'lja', 'Lj5g0021252' => 'lja', 'Lj5g0021484' => 'lja', 'Lj5g0024528' => 'lja', 'Lj6A399T12' => 'lonja', 'Lj6A656G65' => 'lonja', 'Lsat_1_v5_gn_3_125500' => 'lsa', 'Lsat_1_v5_gn_3_125540' => 'lsa', 'Lsat_1_v5_gn_5_72701' => 'lsa', 'Lsat_1_v5_gn_8_91560' => 'lsa', 'Lsat_1_v5_gn_9_9640' => 'lsa', 'Manes.01G200600' => 'mes', 'Manes.01G200700' => 'mes', 'Manes.03G168900' => 'mes', 'Manes.03G169000' => 'mes', 'Manes.05G085801' => 'mes', 'Manes.05G086200' => 'mes', 'Manes.15G036700' => 'mes', 'Manes.15G036900' => 'mes', 'Mapoly0004s0172' => 'mpo', 'Mapoly0023s0001' => 'mpo', 'Mapoly0142s0012' => 'mpo', 'MBI01_g32854_MAGBIO' => 'mbi', 'MBI11_g24427_MAGBIO' => 'mbi', 'MBI11_g47319_MAGBIO' => 'mbi', 'MCO01G433' => 'mco', 'MD00G1187800' => 'mdo', 'MD04G1226500' => 'mdo', 'MD05G1203900' => 'mdo', 'MD10G1191100' => 'mdo', 'MD12G1243500' => 'mdo', 'MD13G1207000' => 'mdo', 'MD13G1207100' => 'mdo', 'MD16G1208600' => 'mdo', 'Medtr1g050352' => 'mtr', 'Medtr1g070385' => 'mtr', 'Medtr1g070450' => 'mtr', 'Medtr1g075200' => 'mtr', 'Medtr1g075250' => 'mtr', 'Medtr1g075260' => 'mtr', 'Medtr1g475250' => 'mtr', 'Medtr4g075450' => 'mtr', 'Medtr7g096300' => 'mtr', 'Medtr8g105110' => 'mtr', 'MELO3C006470.2' => 'cme', 'MELO3C006471.2' => 'cme', 'MELO3C020772.2' => 'cme', 'MELO3C026780.2' => 'cme', 'MELO3C026781.2' => 'cme', 'Migut.D00390' => 'egut', 'Migut.G00435' => 'egut', 'Migut.G00436' => 'egut', 'Migut.G00718' => 'egut', 'MSTRG.21891' => 'ama', 'MSTRG.26910' => 'ama', 'MSTRG.4099' => 'ama', 'MSTRG.9925' => 'ama', 'Nitab4.5_0000165g0010' => 'nta', 'Nitab4.5_0000209g0180' => 'nta', 'Nitab4.5_0000244g0440' => 'nta', 'Nitab4.5_0000525g0220' => 'nta', 'Nitab4.5_0001597g0020' => 'nta', 'Nitab4.5_0001878g0040' => 'nta', 'Nitab4.5_0001878g0060' => 'nta', 'Nitab4.5_0002838g0100' => 'nta', 'Nitab4.5_0002838g0120' => 'nta', 'Nitab4.5_0004798g0030' => 'nta', 'Nitab4.5_0005420g0010' => 'nta', 'Nitab4.5_0005507g0010' => 'nta', 'Nitab4.5_0005574g0020' => 'nta', 'Nitab4.5_0005838g0010' => 'nta', 'Nitab4.5_0010580g0020' => 'nta', 'Nn1g02599' => 'nnu', 'Nn1g02608' => 'nnu', 'Nn3g17742' => 'nnu', 'Nn3g19534' => 'nnu', 'Nn3g19535' => 'nnu', 'Oeu008790.1' => 'oeu', 'Oeu008792.1' => 'oeu', 'Oeu032590.1' => 'oeu', 'Oeu035349.1' => 'oeu', 'Oeu049791.1' => 'oeu', 'Os01g0774500' => 'osa', 'Os03g0628800' => 'osa', 'Os03g0798600' => 'osa', 'Os05g0508800' => 'osa', 'Peaxi162Scf00036g02018' => 'pax', 'Peaxi162Scf00578g00032' => 'pax', 'Peaxi162Scf00578g00317' => 'pax', 'Peaxi162Scf00785g00114' => 'pax', 'Peaxi162Scf00813g00119' => 'pax', 'Peaxi162Scf00906g00227' => 'pax', 'PGR004G0875' => 'pgr', 'PGR004G2424' => 'pgr', 'PGR031G1239' => 'pgr', 'PGR031G2474' => 'pgr', 'PGR044G0423' => 'pgr', 'PGSC0003DMG400001128' => 'stu', 'PGSC0003DMG400007336' => 'stu', 'PGSC0003DMG400016318' => 'stu', 'PGSC0003DMG400016319' => 'stu', 'PGSC0003DMG400018074' => 'stu', 'Phvul.001G157700' => 'pvu', 'Phvul.002G148550' => 'pvu', 'Phvul.002G320200' => 'pvu', 'Phvul.003G089200' => 'pvu', 'Phvul.007G126000' => 'pvu', 'Phvul.007G126100' => 'pvu', 'Phvul.007G178000' => 'pvu', 'Phvul.007G178200' => 'pvu', 'Potri.002G043000' => 'ptr', 'Potri.002G043200' => 'ptr', 'Potri.003G123750' => 'ptr', 'Potri.005G055401' => 'ptr', 'Potri.005G219700' => 'ptr', 'Potri.005G220000' => 'ptr', 'Potri.008G161901' => 'ptr', 'Potri.008G162000' => 'ptr', 'Potri.008G162400' => 'ptr', 'Potri.010G076900' => 'ptr', 'Pp3c12_9180' => 'ppa', 'Pp3c13_19770' => 'ppa', 'Pp3c14_22950' => 'ppa', 'Pp3c16_12160' => 'ppa', 'Pp3c27_7820' => 'ppa', 'Pp3c2_3490' => 'ppa', 'Pp3c3_23700' => 'ppa', 'Pp3c3_36520' => 'ppa', 'Pp3c4_15250' => 'ppa', 'PRCOL_00007002' => 'pco', 'Prupe.1G030600' => 'ppe', 'Prupe.1G030700' => 'ppe', 'Prupe.6G345200' => 'ppe', 'Prupe.8G230300' => 'ppe', 'Prupe.8G230500' => 'ppe', 'Psat3g059600' => 'psa', 'Psat5g200920' => 'psa', 'Psat6g056440' => 'psa', 'Psat6g057360' => 'psa', 'Psat6g134120' => 'psa', 'Psat6g134160' => 'psa', 'Psat7g008640' => 'psa', 'Psat7g185240' => 'psa', 'PSO017G1330' => 'pso', 'PSO063G6097' => 'pso', 'PSO170G0835' => 'pso', 'PSO170G2499' => 'pso', 'PSO210G5058' => 'pso', 'PSO210G6154' => 'pso', 'PSO585G0031' => 'pso', 'PSO832G0264' => 'pso', 'PSO832G4288' => 'pso', 'QL03p027355' => 'qlo', 'QL03p027430' => 'qlo', 'QL04p081380' => 'qlo', 'QL06p015642' => 'qlo', 'QL06p015650' => 'qlo', 'QL06p015686' => 'qlo', 'QL12p042927' => 'qlo', 'QL93p1863_0035' => 'qlo', 'RcHm_v2.0_Chr3g0450581' => 'rch', 'RcHm_v2.0_Chr4g0390371' => 'rch', 'RcHm_v2.0_Chr4g0390381' => 'rch', 'RcHm_v2.0_Chr4g0390491' => 'rch', 'RcHm_v2.0_Chr4g0390501' => 'rch', 'RcHm_v2.0_Chr6g0289231' => 'rch', 'Rhsim04G0190400' => 'rsi', 'Rhsim04G0190500' => 'rsi', 'Rhsim04G0190600' => 'rsi', 'Rhsim13G0031400' => 'rsi', 'Rhsim13G0165600' => 'rsi', 'RhsimUnG0114600' => 'rsi', 'RhsimUnG0114700' => 'rsi', 'Sabra02G0034800' => 'sbr', 'Sabra02G0035100' => 'sbr', 'Sabra05G0168600' => 'sbr', 'Sabra05G0168800' => 'sbr', 'Sabra08G0123700' => 'sbr', 'Sabra10G0031900' => 'sbr', 'Sabra13G0039000' => 'sbr', 'SalBow2G0782' => 'sbo', 'SalBow2G1403' => 'sbo', 'SalBow4G0074' => 'sbo', 'SalBow4G2635' => 'sbo', 'SalBow5G3010' => 'sbo', 'Sc05g0000870' => 'sci', 'Sc05g0000890' => 'sci', 'Sc13g0005000' => 'sci', 'Sc13g0005030' => 'sci', 'Sc19g0003790' => 'sci', 'Sc19g0003800' => 'sci', 'Sed0003467' => 'sed', 'Sed0009355' => 'sed', 'Sed0009894' => 'sed', 'Sed0011972' => 'sed', 'Sed0021483' => 'sed', 'Sed0021750' => 'sed', 'Sed0026279' => 'sed', 'SEGI_05312' => 'sgi', 'SEGI_10112' => 'sgi', 'SEGI_15835' => 'sgi', 'SEGI_30386' => 'sgi', 'SEGI_34122' => 'sgi', 'SEGI_35063' => 'sgi', 'SGA_v2.0_scaffold101G29794' => 'sas', 'SGA_v2.0_scaffold1G00573' => 'sas', 'SGA_v2.0_scaffold79G25637' => 'sas', 'SGA_v2.0_scaffold88G27283' => 'sas', 'SGA_v2.0_scaffold88G27285' => 'sas', 'SGA_v2.0_scaffold88G27331' => 'sas', 'SHI09937' => 'shi', 'SMO119G0302' => 'smo', 'SMO137G0231' => 'smo', 'SMO367G1151' => 'smo', 'Solyc02g082000.3' => 'sly', 'Solyc06g031670.3' => 'sly', 'Solyc06g053810.3' => 'sly', 'Solyc07g025457.1' => 'sly', 'Solyc08g059740.1' => 'sly', 'Solyc08g059750.3' => 'sly', 'Solyc09g083370.3' => 'sly', 'Solyc12g038950.3' => 'sly', 'Sopen02g026630' => 'spe', 'Sopen06g018930' => 'spe', 'Sopen06g018940' => 'spe', 'Sopen08g009460' => 'spe', 'Sopen09g032290' => 'spe', 'Sp1g03080' => 'spa', 'Sp1g03090' => 'spa', 'Sp1g05480' => 'spa', 'Sp2g07860' => 'spa', 'Sp2g08430' => 'spa', 'Sp2g08440' => 'spa', 'Sp2g26200' => 'spa', 'Sp4g13170' => 'spa', 'Sp6g33840' => 'spa', 'SpUn1204_0010' => 'spa', 'TAR365G0908' => 'tar', 'TAR381G1270' => 'tar', 'TAR381G1651' => 'tar', 'TAR625G1131' => 'tar', 'TAR633G0962' => 'tar', 'TAR633G1729' => 'tar', 'TAR633G1864' => 'tar', 'TAR636G0221' => 'tar', 'TAR636G0314' => 'tar', 'TAR636G3202' => 'tar', 'THA.LOC104800805' => 'tha', 'THA.LOC104801096' => 'tha', 'THA.LOC104801555' => 'tha', 'THA.LOC104808491' => 'tha', 'THA.LOC104808595' => 'tha', 'THA.LOC104815985' => 'tha', 'THA.LOC104822250' => 'tha', 'THA.LOC104826071' => 'tha', 'Thecc.01G265200' => 'tca', 'Thecc.01G265300' => 'tca', 'Thecc.01G265700' => 'tca', 'Thecc.03G109100' => 'tca', 'Thecc.04G245900' => 'tca', 'Thecc.04G246000' => 'tca', 'Thhalv10003334m.g' => 'esa', 'Thhalv10005508m.g' => 'esa', 'Thhalv10005643m.g' => 'esa', 'Thhalv10007316m.g' => 'esa', 'Thhalv10009006m.g' => 'esa', 'Thhalv10009309m.g' => 'esa', 'Thhalv10014917m.g' => 'esa', 'Thhalv10014919m.g' => 'esa', 'Thhalv10015393m.g' => 'esa', 'Thhalv10016515m.g' => 'esa', 'Thhalv10029242m.g' => 'esa', 'TPR.G16654' => 'tpr', 'TPR.G20589' => 'tpr', 'TPR.G23029' => 'tpr', 'TPR.G27731' => 'tpr', 'TPR.G28889' => 'tpr', 'TPR.G28899' => 'tpr', 'TPR.G30846' => 'tpr', 'TPR.G5452' => 'tpr', 'TPR.G5713' => 'tpr', 'TPR.G9046' => 'tpr', 'TPR.G9061' => 'tpr', 'TWI09G1075' => 'twi', 'TWI12G0806' => 'twi', 'TWI18G0108' => 'twi', 'TWI53G1361' => 'twi', 'TWI73G0185' => 'twi', 'TWI73G0427' => 'twi', 'unitig_37.g12001' => 'ugi', 'unitig_747.g21660' => 'ugi', 'unitig_748.g7232' => 'ugi', 'unitig_748.g7315' => 'ugi', 'unitig_85.g27262' => 'ugi', 'unitig_92.g28220' => 'ugi', 'vmacro02632' => 'vma', 'vmacro08410' => 'vma', 'vmacro08411' => 'vma', 'vmacro15407' => 'vma', 'VMungo0251G3619' => 'vmu', 'VMungo0720G1204' => 'vmu', 'VMungo0720G1918' => 'vmu', 'VMungo0720G2387' => 'vmu', 'VMungo0720G2961' => 'vmu', 'VMungo1215G2154' => 'vmu', 'VMungo1383G2411' => 'vmu', 'Zm00001eb051130' => 'zma', 'Zm00001eb116830' => 'zma', 'Zm00001eb116850' => 'zma', 'Zm00001eb151740' => 'zma', 'Zm00001eb292360' => 'zma', 'Zm00001eb301640' => 'zma' ) $gf_id = 'HOM05D000856' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000856' ) $data_identifier = 'HOM05D000856' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 13, 'ath' => (int) 10, 'atr' => (int) 1, 'acertr' => (int) 8, 'cqu' => (int) 6, 'bca' => (int) 21, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 11, 'car' => (int) 9, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 8, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 5, 'fan' => (int) 16, 'fve' => (int) 6, 'gma' => (int) 11, 'ghi' => (int) 19, 'gra' => (int) 9, 'vvi' => (int) 7, 'han' => (int) 17, 'cav' => (int) 5, 'hma' => (int) 2, 'vpl' => (int) 2, 'sun' => (int) 7, 'lal' => (int) 9, 'lja' => (int) 5, 'lonja' => (int) 9, 'lsa' => (int) 5, 'mes' => (int) 8, 'mpo' => (int) 3, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 10, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 15, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 9, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 9, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 6, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 5, 'spa' => (int) 10, 'tar' => (int) 10, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 11, 'tpr' => (int) 11, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 4, 'vmu' => (int) 7, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb301640' $species_info = array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ) $local_species = 'fve' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000856', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p00010' => 'bna', 'A03p04160' => 'bna', 'A03p17160' => 'bna', 'A04p23370' => 'bna', 'A05p14860' => 'bna', 'A08p37020' => 'bna', 'A09p08050' => 'bna', 'A09p66800' => 'bna', 'A09p67940' => 'bna', 'A10p02680' => 'bna', 'A10p05320' => 'bna', 'Aa31LG1G20560' => 'aar', 'Aa31LG1G20610' => 'aar', 'Aa31LG1G7810' => 'aar', 'Aa31LG5G3590' => 'aar', 'Aa31LG5G6140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3819' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4683' => 'aag', 'Actinidia04480' => 'ach', 'Actinidia05466' => 'ach', 'Actinidia08445' => 'ach', 'Actinidia21170' => 'ach', 'Actinidia24812' => 'ach', 'Actinidia24951' => 'ach', 'Actinidia40088' => 'ach', 'Ah.02g111660' => 'amhyb', 'Ah.11g048900' => 'amhyb', 'Ah.11g049910' => 'amhyb', 'AL1G13870' => 'aly', 'AL1G13880' => 'aly', 'AL1G16760' => 'aly', 'AL390U10020' => 'aly', 'AL4G25520' => 'aly', 'AL6G19890' => 'aly', 'AL6G19900' => 'aly', 'AL6G19910' => 'aly', 'AL8G40100' => 'aly', 'Aqoxy2G03562' => 'aox', 'Aqoxy5G00316' => 'aox', 'Aqoxy5G00926' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1628KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1H403S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2FU6SJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.882I6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8YRY2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YN1SN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AF70II' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZA8L1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F916KL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHRD8H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KTZ8QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S22EMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8M29T' => 'arhy', 'AT1G04270' => 'ath', 'AT1G04280' => 'ath', 'AT1G06750' => 'ath', 'AT1G33850' => 'ath', 'AT2G30630' => 'ath', 'AT5G09490' => 'ath', 'AT5G09500' => 'ath', 'AT5G09510' => 'ath', 'AT5G43640' => 'ath', 'AT5G63070' => 'ath', 'ATR0605G315' => 'atr', 'Atru.chr11.175' => 'acertr', 'Atru.chr11.653' => 'acertr', 'Atru.chr3.1616' => 'acertr', 'Atru.chr4.2230' => 'acertr', 'Atru.chr4.2232' => 'acertr', 'Atru.chr5.1598' => 'acertr', 'Atru.chr5.1600' => 'acertr', 'Atru.chr5.2188' => 'acertr', 'AUR62008326' => 'cqu', 'AUR62011922' => 'cqu', 'AUR62011924' => 'cqu', 'AUR62021771' => 'cqu', 'AUR62032237' => 'cqu', 'AUR62032240' => 'cqu', 'BcaB01g05572' => 'bca', 'BcaB02g10337' => 'bca', 'BcaB04g19944' => 'bca', 'BcaB05g21548' => 'bca', 'BcaB05g21549' => 'bca', 'BcaB05g23227' => 'bca', 'BcaB06g26256' => 'bca', 'BcaB06g26257' => 'bca', 'BcaB06g28379' => 'bca', 'BcaC02g11159' => 'bca', 'BcaC03g13258' => 'bca', 'BcaC03g13259' => 'bca', 'BcaC05g24456' => 'bca', 'BcaC05g24457' => 'bca', 'BcaC07g36922' => 'bca', 'BcaC07g36923' => 'bca', 'BcaC07g42050' => 'bca', 'BcaC07g42176' => 'bca', 'BcaC07g42195' => 'bca', 'BcaC07g42196' => 'bca', 'BcaNung06674' => 'bca', 'BolC2t06351H' => 'bol', 'BolC2t06352H' => 'bol', 'BolC3t12993H' => 'bol', 'BolC4t23525H' => 'bol', 'BolC4t27475H' => 'bol', 'BolC5t29025H' => 'bol', 'BolC5t29026H' => 'bol', 'BolC8t46898H' => 'bol', 'BolC8t46899H' => 'bol', 'BolC8t52630H' => 'bol', 'BolC8t52765H' => 'bol', 'BolC9t53824H' => 'bol', 'BraA03t09760Z' => 'bra', 'BraA03t10990Z' => 'bra', 'BraA05t20413Z' => 'bra', 'BraA08t35602Z' => 'bra', 'BraA09t36458Z' => 'bra', 'BraA09t42018Z' => 'bra', 'BraA09t42129Z' => 'bra', 'BraA10t42536Z' => 'bra', 'BraA10t42537Z' => 'bra', 'C01p10690' => 'bna', 'C02p03890' => 'bna', 'C02p03900' => 'bna', 'C03p04620' => 'bna', 'C04p19870' => 'bna', 'C04p59670' => 'bna', 'C05p02460' => 'bna', 'C05p02470' => 'bna', 'C08p00980' => 'bna', 'C08p00990' => 'bna', 'C08p51030' => 'bna', 'C08p52360' => 'bna', 'C09p09120' => 'bna', 'CAN.G19.15' => 'can', 'CAN.G251.10' => 'can', 'CAN.G251.9' => 'can', 'CAN.G398.24' => 'can', 'CAN.G410.32' => 'can', 'CAN.G881.2' => 'can', 'CANSAT01G3025' => 'cansat', 'CANSAT78G1211' => 'cansat', 'CANSAT78G1218' => 'cansat', 'CANSAT78G1521' => 'cansat', 'CANSAT78G1670' => 'cansat', 'CARHR003600' => 'chi', 'CARHR003610' => 'chi', 'CARHR006290' => 'chi', 'CARHR006430' => 'chi', 'CARHR124110' => 'chi', 'CARHR203870' => 'chi', 'CARHR203880' => 'chi', 'CARHR203890' => 'chi', 'CARHR276880' => 'chi', 'Carub.0001s0346' => 'cru', 'Carub.0001s0347' => 'cru', 'Carub.0001s0607' => 'cru', 'Carub.0003s2768' => 'cru', 'Carub.0003s2769' => 'cru', 'Carub.0004s1178' => 'cru', 'Carub.0006s0806' => 'cru', 'Carub.0006s0807' => 'cru', 'Carub.0006s0808' => 'cru', 'Carub.0008s0501' => 'cru', 'Carub.0008s2379' => 'cru', 'Ca_08655_v3' => 'car', 'Ca_08922_v3' => 'car', 'Ca_08923_v3' => 'car', 'Ca_09119_v3' => 'car', 'Ca_09703_v3' => 'car', 'Ca_09705_v3' => 'car', 'Ca_09835_v3' => 'car', 'Ca_26403_v3' => 'car', 'Ca_30719_v3' => 'car', 'CBR_g17958' => 'cbr', 'CBR_g40516' => 'cbr', 'Cc00_g05350' => 'ccan', 'Cc01_g18690' => 'ccan', 'Cc03_g04830' => 'ccan', 'Cc03_g04850' => 'ccan', 'CDE02G4469' => 'cde', 'CDE06G0883' => 'cde', 'CDE06G1295' => 'cde', 'CDE06G1390' => 'cde', 'CDE07G0584' => 'cde', 'CDE07G1084' => 'cde', 'CDE08G1259' => 'cde', 'Cfa002341' => 'cfa', 'Cfa024337' => 'cfa', 'Ciclev10004749m.g' => 'ccl', 'Ciclev10006127m.g' => 'ccl', 'Ciclev10019720m.g' => 'ccl', 'Ciclev10022652m.g' => 'ccl', 'CiPaw.01G190400' => 'cil', 'CiPaw.01G190500' => 'cil', 'CiPaw.02G116400' => 'cil', 'CiPaw.02G116500' => 'cil', 'CiPaw.04G183000' => 'cil', 'CiPaw.04G183300' => 'cil', 'ClCG05G004610' => 'cla', 'ClCG05G004620' => 'cla', 'ClCG06G006730' => 'cla', 'ClCG06G006740' => 'cla', 'ClCG11G003690' => 'cla', 'COL.COLO4_08276' => 'col', 'COL.COLO4_08277' => 'col', 'COL.COLO4_15787' => 'col', 'COL.COLO4_15789' => 'col', 'Cpa.g.c44815' => 'cpa', 'Cpa.g.sc52.144' => 'cpa', 'Cpa.g.sc58.46' => 'cpa', 'Cpa.g.sc58.47' => 'cpa', 'Cre08.g360900' => 'cre', 'CsaV3_2G013030' => 'csa', 'CsaV3_2G013050' => 'csa', 'CsaV3_2G015620' => 'csa', 'CsaV3_3G012590' => 'csa', 'CsaV3_3G012600' => 'csa', 'CSS0001641' => 'camsi', 'CSS0008310' => 'camsi', 'CSS0013011' => 'camsi', 'CSS0017147' => 'camsi', 'CSS0022970' => 'camsi', 'CSS0025655' => 'camsi', 'CSS0028665' => 'camsi', 'CSS0029117' => 'camsi', 'CSS0032024' => 'camsi', 'CSS0039681' => 'camsi', 'CSS0046516' => 'camsi', 'CSS0050307' => 'camsi', 'DCAR_005871' => 'dca', 'DCAR_007342' => 'dca', 'DCAR_024228' => 'dca', 'DCAR_027277' => 'dca', 'DCAR_030718' => 'dca', 'Dinv20287' => 'din', 'Dinv22461' => 'din', 'Dinv22464' => 'din', 'Dinv29912' => 'din', 'Dinv29913' => 'din', 'Dinv34580' => 'din', 'Dinv34582' => 'din', 'Dinv44632' => 'din', 'Duzib052G0266' => 'dzi', 'Duzib133G0907' => 'dzi', 'Duzib133G1034' => 'dzi', 'Duzib138G0207' => 'dzi', 'Duzib138G0491' => 'dzi', 'Duzib151G0812' => 'dzi', 'Duzib151G1166' => 'dzi', 'Duzib168G0192' => 'dzi', 'Duzib211G0077' => 'dzi', 'Duzib212G0429' => 'dzi', 'Duzib212G0472' => 'dzi', 'ECA233G2617' => 'eca', 'ECA236G4188' => 'eca', 'ECA240G0936' => 'eca', 'ECA240G1129' => 'eca', 'ECA247G0623' => 'eca', 'EL10Ac5g10451' => 'bvu', 'EL10Ac5g10453' => 'bvu', 'EL10Ac5g10894' => 'bvu', 'Eucgr.H00192' => 'egr', 'Eucgr.H00193' => 'egr', 'Eucgr.H00194' => 'egr', 'Eucgr.J01562' => 'egr', 'Eucgr.K03301' => 'egr', 'FAN02G0632' => 'fan', 'FAN05G5378' => 'fan', 'FAN09G3247' => 'fan', 'FAN12G0435' => 'fan', 'FAN12G2426' => 'fan', 'FAN14G1707' => 'fan', 'FAN14G4725' => 'fan', 'FAN15G2071' => 'fan', 'FAN17G3065' => 'fan', 'FAN19G1376' => 'fan', 'FAN20G0354' => 'fan', 'FAN20G2429' => 'fan', 'FAN20G2658' => 'fan', 'FAN24G2343' => 'fan', 'FAN27G2362' => 'fan', 'FAN28G1765' => 'fan', 'FvH4_1g16020' => 'fve', 'FvH4_2g04890' => 'fve', 'FvH4_2g22270' => 'fve', 'FvH4_4g02630' => 'fve', 'FvH4_4g02640' => 'fve', 'FvH4_6g02650' => 'fve', 'Glyma.02G140600' => 'gma', 'Glyma.03G159900' => 'gma', 'Glyma.05G234800' => 'gma', 'Glyma.07G269600' => 'gma', 'Glyma.08G042300' => 'gma', 'Glyma.10G033500' => 'gma', 'Glyma.10G185200' => 'gma', 'Glyma.17G004300' => 'gma', 'Glyma.19G161900' => 'gma', 'Glyma.20G205100' => 'gma', 'Glyma.20G205200' => 'gma', 'Gohir.A01G139101' => 'ghi', 'Gohir.A02G035600' => 'ghi', 'Gohir.A02G117901' => 'ghi', 'Gohir.A07G210100' => 'ghi', 'Gohir.A07G210200' => 'ghi', 'Gohir.A08G061100' => 'ghi', 'Gohir.A09G223000' => 'ghi', 'Gohir.A09G223100' => 'ghi', 'Gohir.A10G113900' => 'ghi', 'Gohir.A10G114000' => 'ghi', 'Gohir.D02G042300' => 'ghi', 'Gohir.D07G216100' => 'ghi', 'Gohir.D07G216200' => 'ghi', 'Gohir.D08G070400' => 'ghi', 'Gohir.D09G225000' => 'ghi', 'Gohir.D09G225100' => 'ghi', 'Gohir.D10G152300' => 'ghi', 'Gohir.D10G153200' => 'ghi', 'Gohir.D11G133701' => 'ghi', 'Gorai.004G074100' => 'gra', 'Gorai.005G046800' => 'gra', 'Gorai.006G246500' => 'gra', 'Gorai.006G246600' => 'gra', 'Gorai.007G142900' => 'gra', 'Gorai.011G171000' => 'gra', 'Gorai.011G171100' => 'gra', 'Gorai.013G104300' => 'gra', 'Gorai.013G104400' => 'gra', 'GSVIVG01000754001' => 'vvi', 'GSVIVG01000756001' => 'vvi', 'GSVIVG01010903001' => 'vvi', 'GSVIVG01017623001' => 'vvi', 'GSVIVG01018113001' => 'vvi', 'GSVIVG01018116001' => 'vvi', 'GSVIVG01018118001' => 'vvi', 'HanXRQChr03g0076211' => 'han', 'HanXRQChr03g0092431' => 'han', 'HanXRQChr03g0092441' => 'han', 'HanXRQChr03g0092591' => 'han', 'HanXRQChr03g0092671' => 'han', 'HanXRQChr03g0092681' => 'han', 'HanXRQChr03g0092691' => 'han', 'HanXRQChr03g0092701' => 'han', 'HanXRQChr03g0092721' => 'han', 'HanXRQChr03g0092731' => 'han', 'HanXRQChr04g0113681' => 'han', 'HanXRQChr10g0281371' => 'han', 'HanXRQChr11g0337141' => 'han', 'HanXRQChr13g0424521' => 'han', 'HanXRQChr13g0424531' => 'han', 'HanXRQChr13g0424541' => 'han', 'HanXRQChr16g0498221' => 'han', 'Haze_04377' => 'cav', 'Haze_11298' => 'cav', 'Haze_24547' => 'cav', 'Haze_24550' => 'cav', 'Haze_26587' => 'cav', 'Hma1.2p1_0650F.1_g195410' => 'hma', 'Hma1.2p1_0893F.1_g233470' => 'hma', 'HPP92_006508' => 'vpl', 'HPP92_024780' => 'vpl', 'Hund02688' => 'sun', 'Hund09380' => 'sun', 'Hund09381' => 'sun', 'Hund09832' => 'sun', 'Hund09833' => 'sun', 'Hund11351' => 'sun', 'Hund11513' => 'sun', 'Lalb_Chr06g0162591' => 'lal', 'Lalb_Chr06g0162601' => 'lal', 'Lalb_Chr06g0169321' => 'lal', 'Lalb_Chr09g0330951' => 'lal', 'Lalb_Chr16g0387631' => 'lal', 'Lalb_Chr21g0306241' => 'lal', 'Lalb_Chr25g0290051' => 'lal', 'Lalb_Chr25g0290061' => 'lal', 'Lalb_Chr25g0290071' => 'lal', 'Lj1g0003876' => 'lja', 'Lj1P1207T36' => 'lonja', 'Lj2C1156G12' => 'lonja', 'Lj3A793G39' => 'lonja', 'Lj3C580G2' => 'lonja', 'Lj3C780G2' => 'lonja', 'Lj3C780T4' => 'lonja', 'Lj3C793G9' => 'lonja', 'Lj4g0012960' => 'lja', 'Lj5g0021252' => 'lja', 'Lj5g0021484' => 'lja', 'Lj5g0024528' => 'lja', 'Lj6A399T12' => 'lonja', 'Lj6A656G65' => 'lonja', 'Lsat_1_v5_gn_3_125500' => 'lsa', 'Lsat_1_v5_gn_3_125540' => 'lsa', 'Lsat_1_v5_gn_5_72701' => 'lsa', 'Lsat_1_v5_gn_8_91560' => 'lsa', 'Lsat_1_v5_gn_9_9640' => 'lsa', 'Manes.01G200600' => 'mes', 'Manes.01G200700' => 'mes', 'Manes.03G168900' => 'mes', 'Manes.03G169000' => 'mes', 'Manes.05G085801' => 'mes', 'Manes.05G086200' => 'mes', 'Manes.15G036700' => 'mes', 'Manes.15G036900' => 'mes', 'Mapoly0004s0172' => 'mpo', 'Mapoly0023s0001' => 'mpo', 'Mapoly0142s0012' => 'mpo', 'MBI01_g32854_MAGBIO' => 'mbi', 'MBI11_g24427_MAGBIO' => 'mbi', 'MBI11_g47319_MAGBIO' => 'mbi', 'MCO01G433' => 'mco', 'MD00G1187800' => 'mdo', 'MD04G1226500' => 'mdo', 'MD05G1203900' => 'mdo', 'MD10G1191100' => 'mdo', 'MD12G1243500' => 'mdo', 'MD13G1207000' => 'mdo', 'MD13G1207100' => 'mdo', 'MD16G1208600' => 'mdo', 'Medtr1g050352' => 'mtr', 'Medtr1g070385' => 'mtr', 'Medtr1g070450' => 'mtr', 'Medtr1g075200' => 'mtr', 'Medtr1g075250' => 'mtr', 'Medtr1g075260' => 'mtr', 'Medtr1g475250' => 'mtr', 'Medtr4g075450' => 'mtr', 'Medtr7g096300' => 'mtr', 'Medtr8g105110' => 'mtr', 'MELO3C006470.2' => 'cme', 'MELO3C006471.2' => 'cme', 'MELO3C020772.2' => 'cme', 'MELO3C026780.2' => 'cme', 'MELO3C026781.2' => 'cme', 'Migut.D00390' => 'egut', 'Migut.G00435' => 'egut', 'Migut.G00436' => 'egut', 'Migut.G00718' => 'egut', 'MSTRG.21891' => 'ama', 'MSTRG.26910' => 'ama', 'MSTRG.4099' => 'ama', 'MSTRG.9925' => 'ama', 'Nitab4.5_0000165g0010' => 'nta', 'Nitab4.5_0000209g0180' => 'nta', 'Nitab4.5_0000244g0440' => 'nta', 'Nitab4.5_0000525g0220' => 'nta', 'Nitab4.5_0001597g0020' => 'nta', 'Nitab4.5_0001878g0040' => 'nta', 'Nitab4.5_0001878g0060' => 'nta', 'Nitab4.5_0002838g0100' => 'nta', 'Nitab4.5_0002838g0120' => 'nta', 'Nitab4.5_0004798g0030' => 'nta', 'Nitab4.5_0005420g0010' => 'nta', 'Nitab4.5_0005507g0010' => 'nta', 'Nitab4.5_0005574g0020' => 'nta', 'Nitab4.5_0005838g0010' => 'nta', 'Nitab4.5_0010580g0020' => 'nta', 'Nn1g02599' => 'nnu', 'Nn1g02608' => 'nnu', 'Nn3g17742' => 'nnu', 'Nn3g19534' => 'nnu', 'Nn3g19535' => 'nnu', 'Oeu008790.1' => 'oeu', 'Oeu008792.1' => 'oeu', 'Oeu032590.1' => 'oeu', 'Oeu035349.1' => 'oeu', 'Oeu049791.1' => 'oeu', 'Os01g0774500' => 'osa', 'Os03g0628800' => 'osa', 'Os03g0798600' => 'osa', 'Os05g0508800' => 'osa', 'Peaxi162Scf00036g02018' => 'pax', 'Peaxi162Scf00578g00032' => 'pax', 'Peaxi162Scf00578g00317' => 'pax', 'Peaxi162Scf00785g00114' => 'pax', 'Peaxi162Scf00813g00119' => 'pax', 'Peaxi162Scf00906g00227' => 'pax', 'PGR004G0875' => 'pgr', 'PGR004G2424' => 'pgr', 'PGR031G1239' => 'pgr', 'PGR031G2474' => 'pgr', 'PGR044G0423' => 'pgr', 'PGSC0003DMG400001128' => 'stu', 'PGSC0003DMG400007336' => 'stu', 'PGSC0003DMG400016318' => 'stu', 'PGSC0003DMG400016319' => 'stu', 'PGSC0003DMG400018074' => 'stu', 'Phvul.001G157700' => 'pvu', 'Phvul.002G148550' => 'pvu', 'Phvul.002G320200' => 'pvu', 'Phvul.003G089200' => 'pvu', 'Phvul.007G126000' => 'pvu', 'Phvul.007G126100' => 'pvu', 'Phvul.007G178000' => 'pvu', 'Phvul.007G178200' => 'pvu', 'Potri.002G043000' => 'ptr', 'Potri.002G043200' => 'ptr', 'Potri.003G123750' => 'ptr', 'Potri.005G055401' => 'ptr', 'Potri.005G219700' => 'ptr', 'Potri.005G220000' => 'ptr', 'Potri.008G161901' => 'ptr', 'Potri.008G162000' => 'ptr', 'Potri.008G162400' => 'ptr', 'Potri.010G076900' => 'ptr', 'Pp3c12_9180' => 'ppa', 'Pp3c13_19770' => 'ppa', 'Pp3c14_22950' => 'ppa', 'Pp3c16_12160' => 'ppa', 'Pp3c27_7820' => 'ppa', 'Pp3c2_3490' => 'ppa', 'Pp3c3_23700' => 'ppa', 'Pp3c3_36520' => 'ppa', 'Pp3c4_15250' => 'ppa', 'PRCOL_00007002' => 'pco', 'Prupe.1G030600' => 'ppe', 'Prupe.1G030700' => 'ppe', 'Prupe.6G345200' => 'ppe', 'Prupe.8G230300' => 'ppe', 'Prupe.8G230500' => 'ppe', 'Psat3g059600' => 'psa', 'Psat5g200920' => 'psa', 'Psat6g056440' => 'psa', 'Psat6g057360' => 'psa', 'Psat6g134120' => 'psa', 'Psat6g134160' => 'psa', 'Psat7g008640' => 'psa', 'Psat7g185240' => 'psa', 'PSO017G1330' => 'pso', 'PSO063G6097' => 'pso', 'PSO170G0835' => 'pso', 'PSO170G2499' => 'pso', 'PSO210G5058' => 'pso', 'PSO210G6154' => 'pso', 'PSO585G0031' => 'pso', 'PSO832G0264' => 'pso', 'PSO832G4288' => 'pso', 'QL03p027355' => 'qlo', 'QL03p027430' => 'qlo', 'QL04p081380' => 'qlo', 'QL06p015642' => 'qlo', 'QL06p015650' => 'qlo', 'QL06p015686' => 'qlo', 'QL12p042927' => 'qlo', 'QL93p1863_0035' => 'qlo', 'RcHm_v2.0_Chr3g0450581' => 'rch', 'RcHm_v2.0_Chr4g0390371' => 'rch', 'RcHm_v2.0_Chr4g0390381' => 'rch', 'RcHm_v2.0_Chr4g0390491' => 'rch', 'RcHm_v2.0_Chr4g0390501' => 'rch', 'RcHm_v2.0_Chr6g0289231' => 'rch', 'Rhsim04G0190400' => 'rsi', 'Rhsim04G0190500' => 'rsi', 'Rhsim04G0190600' => 'rsi', 'Rhsim13G0031400' => 'rsi', 'Rhsim13G0165600' => 'rsi', 'RhsimUnG0114600' => 'rsi', 'RhsimUnG0114700' => 'rsi', 'Sabra02G0034800' => 'sbr', 'Sabra02G0035100' => 'sbr', 'Sabra05G0168600' => 'sbr', 'Sabra05G0168800' => 'sbr', 'Sabra08G0123700' => 'sbr', 'Sabra10G0031900' => 'sbr', 'Sabra13G0039000' => 'sbr', 'SalBow2G0782' => 'sbo', 'SalBow2G1403' => 'sbo', 'SalBow4G0074' => 'sbo', 'SalBow4G2635' => 'sbo', 'SalBow5G3010' => 'sbo', 'Sc05g0000870' => 'sci', 'Sc05g0000890' => 'sci', 'Sc13g0005000' => 'sci', 'Sc13g0005030' => 'sci', 'Sc19g0003790' => 'sci', 'Sc19g0003800' => 'sci', 'Sed0003467' => 'sed', 'Sed0009355' => 'sed', 'Sed0009894' => 'sed', 'Sed0011972' => 'sed', 'Sed0021483' => 'sed', 'Sed0021750' => 'sed', 'Sed0026279' => 'sed', 'SEGI_05312' => 'sgi', 'SEGI_10112' => 'sgi', 'SEGI_15835' => 'sgi', 'SEGI_30386' => 'sgi', 'SEGI_34122' => 'sgi', 'SEGI_35063' => 'sgi', 'SGA_v2.0_scaffold101G29794' => 'sas', 'SGA_v2.0_scaffold1G00573' => 'sas', 'SGA_v2.0_scaffold79G25637' => 'sas', 'SGA_v2.0_scaffold88G27283' => 'sas', 'SGA_v2.0_scaffold88G27285' => 'sas', 'SGA_v2.0_scaffold88G27331' => 'sas', 'SHI09937' => 'shi', 'SMO119G0302' => 'smo', 'SMO137G0231' => 'smo', 'SMO367G1151' => 'smo', 'Solyc02g082000.3' => 'sly', 'Solyc06g031670.3' => 'sly', 'Solyc06g053810.3' => 'sly', 'Solyc07g025457.1' => 'sly', 'Solyc08g059740.1' => 'sly', 'Solyc08g059750.3' => 'sly', 'Solyc09g083370.3' => 'sly', 'Solyc12g038950.3' => 'sly', 'Sopen02g026630' => 'spe', 'Sopen06g018930' => 'spe', 'Sopen06g018940' => 'spe', 'Sopen08g009460' => 'spe', 'Sopen09g032290' => 'spe', 'Sp1g03080' => 'spa', 'Sp1g03090' => 'spa', 'Sp1g05480' => 'spa', 'Sp2g07860' => 'spa', 'Sp2g08430' => 'spa', 'Sp2g08440' => 'spa', 'Sp2g26200' => 'spa', 'Sp4g13170' => 'spa', 'Sp6g33840' => 'spa', 'SpUn1204_0010' => 'spa', 'TAR365G0908' => 'tar', 'TAR381G1270' => 'tar', 'TAR381G1651' => 'tar', 'TAR625G1131' => 'tar', 'TAR633G0962' => 'tar', 'TAR633G1729' => 'tar', 'TAR633G1864' => 'tar', 'TAR636G0221' => 'tar', 'TAR636G0314' => 'tar', 'TAR636G3202' => 'tar', 'THA.LOC104800805' => 'tha', 'THA.LOC104801096' => 'tha', 'THA.LOC104801555' => 'tha', 'THA.LOC104808491' => 'tha', 'THA.LOC104808595' => 'tha', 'THA.LOC104815985' => 'tha', 'THA.LOC104822250' => 'tha', 'THA.LOC104826071' => 'tha', 'Thecc.01G265200' => 'tca', 'Thecc.01G265300' => 'tca', 'Thecc.01G265700' => 'tca', 'Thecc.03G109100' => 'tca', 'Thecc.04G245900' => 'tca', 'Thecc.04G246000' => 'tca', 'Thhalv10003334m.g' => 'esa', 'Thhalv10005508m.g' => 'esa', 'Thhalv10005643m.g' => 'esa', 'Thhalv10007316m.g' => 'esa', 'Thhalv10009006m.g' => 'esa', 'Thhalv10009309m.g' => 'esa', 'Thhalv10014917m.g' => 'esa', 'Thhalv10014919m.g' => 'esa', 'Thhalv10015393m.g' => 'esa', 'Thhalv10016515m.g' => 'esa', 'Thhalv10029242m.g' => 'esa', 'TPR.G16654' => 'tpr', 'TPR.G20589' => 'tpr', 'TPR.G23029' => 'tpr', 'TPR.G27731' => 'tpr', 'TPR.G28889' => 'tpr', 'TPR.G28899' => 'tpr', 'TPR.G30846' => 'tpr', 'TPR.G5452' => 'tpr', 'TPR.G5713' => 'tpr', 'TPR.G9046' => 'tpr', 'TPR.G9061' => 'tpr', 'TWI09G1075' => 'twi', 'TWI12G0806' => 'twi', 'TWI18G0108' => 'twi', 'TWI53G1361' => 'twi', 'TWI73G0185' => 'twi', 'TWI73G0427' => 'twi', 'unitig_37.g12001' => 'ugi', 'unitig_747.g21660' => 'ugi', 'unitig_748.g7232' => 'ugi', 'unitig_748.g7315' => 'ugi', 'unitig_85.g27262' => 'ugi', 'unitig_92.g28220' => 'ugi', 'vmacro02632' => 'vma', 'vmacro08410' => 'vma', 'vmacro08411' => 'vma', 'vmacro15407' => 'vma', 'VMungo0251G3619' => 'vmu', 'VMungo0720G1204' => 'vmu', 'VMungo0720G1918' => 'vmu', 'VMungo0720G2387' => 'vmu', 'VMungo0720G2961' => 'vmu', 'VMungo1215G2154' => 'vmu', 'VMungo1383G2411' => 'vmu', 'Zm00001eb051130' => 'zma', 'Zm00001eb116830' => 'zma', 'Zm00001eb116850' => 'zma', 'Zm00001eb151740' => 'zma', 'Zm00001eb292360' => 'zma', 'Zm00001eb301640' => 'zma' ), 'gf_id' => 'HOM05D000856', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000856' ), 'data_identifier' => 'HOM05D000856', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000856', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p00010' => 'bna', 'A03p04160' => 'bna', 'A03p17160' => 'bna', 'A04p23370' => 'bna', 'A05p14860' => 'bna', 'A08p37020' => 'bna', 'A09p08050' => 'bna', 'A09p66800' => 'bna', 'A09p67940' => 'bna', 'A10p02680' => 'bna', 'A10p05320' => 'bna', 'Aa31LG1G20560' => 'aar', 'Aa31LG1G20610' => 'aar', 'Aa31LG1G7810' => 'aar', 'Aa31LG5G3590' => 'aar', 'Aa31LG5G6140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3819' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4683' => 'aag', 'Actinidia04480' => 'ach', 'Actinidia05466' => 'ach', 'Actinidia08445' => 'ach', 'Actinidia21170' => 'ach', 'Actinidia24812' => 'ach', 'Actinidia24951' => 'ach', 'Actinidia40088' => 'ach', 'Ah.02g111660' => 'amhyb', 'Ah.11g048900' => 'amhyb', 'Ah.11g049910' => 'amhyb', 'AL1G13870' => 'aly', 'AL1G13880' => 'aly', 'AL1G16760' => 'aly', 'AL390U10020' => 'aly', 'AL4G25520' => 'aly', 'AL6G19890' => 'aly', 'AL6G19900' => 'aly', 'AL6G19910' => 'aly', 'AL8G40100' => 'aly', 'Aqoxy2G03562' => 'aox', 'Aqoxy5G00316' => 'aox', 'Aqoxy5G00926' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1628KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1H403S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2FU6SJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.882I6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8YRY2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YN1SN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AF70II' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZA8L1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F916KL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHRD8H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KTZ8QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S22EMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8M29T' => 'arhy', 'AT1G04270' => 'ath', 'AT1G04280' => 'ath', 'AT1G06750' => 'ath', 'AT1G33850' => 'ath', 'AT2G30630' => 'ath', 'AT5G09490' => 'ath', 'AT5G09500' => 'ath', 'AT5G09510' => 'ath', 'AT5G43640' => 'ath', 'AT5G63070' => 'ath', 'ATR0605G315' => 'atr', 'Atru.chr11.175' => 'acertr', 'Atru.chr11.653' => 'acertr', 'Atru.chr3.1616' => 'acertr', 'Atru.chr4.2230' => 'acertr', 'Atru.chr4.2232' => 'acertr', 'Atru.chr5.1598' => 'acertr', 'Atru.chr5.1600' => 'acertr', 'Atru.chr5.2188' => 'acertr', 'AUR62008326' => 'cqu', 'AUR62011922' => 'cqu', 'AUR62011924' => 'cqu', 'AUR62021771' => 'cqu', 'AUR62032237' => 'cqu', 'AUR62032240' => 'cqu', 'BcaB01g05572' => 'bca', 'BcaB02g10337' => 'bca', 'BcaB04g19944' => 'bca', 'BcaB05g21548' => 'bca', 'BcaB05g21549' => 'bca', 'BcaB05g23227' => 'bca', 'BcaB06g26256' => 'bca', 'BcaB06g26257' => 'bca', 'BcaB06g28379' => 'bca', 'BcaC02g11159' => 'bca', 'BcaC03g13258' => 'bca', 'BcaC03g13259' => 'bca', 'BcaC05g24456' => 'bca', 'BcaC05g24457' => 'bca', 'BcaC07g36922' => 'bca', 'BcaC07g36923' => 'bca', 'BcaC07g42050' => 'bca', 'BcaC07g42176' => 'bca', 'BcaC07g42195' => 'bca', 'BcaC07g42196' => 'bca', 'BcaNung06674' => 'bca', 'BolC2t06351H' => 'bol', 'BolC2t06352H' => 'bol', 'BolC3t12993H' => 'bol', 'BolC4t23525H' => 'bol', 'BolC4t27475H' => 'bol', 'BolC5t29025H' => 'bol', 'BolC5t29026H' => 'bol', 'BolC8t46898H' => 'bol', 'BolC8t46899H' => 'bol', 'BolC8t52630H' => 'bol', 'BolC8t52765H' => 'bol', 'BolC9t53824H' => 'bol', 'BraA03t09760Z' => 'bra', 'BraA03t10990Z' => 'bra', 'BraA05t20413Z' => 'bra', 'BraA08t35602Z' => 'bra', 'BraA09t36458Z' => 'bra', 'BraA09t42018Z' => 'bra', 'BraA09t42129Z' => 'bra', 'BraA10t42536Z' => 'bra', 'BraA10t42537Z' => 'bra', 'C01p10690' => 'bna', 'C02p03890' => 'bna', 'C02p03900' => 'bna', 'C03p04620' => 'bna', 'C04p19870' => 'bna', 'C04p59670' => 'bna', 'C05p02460' => 'bna', 'C05p02470' => 'bna', 'C08p00980' => 'bna', 'C08p00990' => 'bna', 'C08p51030' => 'bna', 'C08p52360' => 'bna', 'C09p09120' => 'bna', 'CAN.G19.15' => 'can', 'CAN.G251.10' => 'can', 'CAN.G251.9' => 'can', 'CAN.G398.24' => 'can', 'CAN.G410.32' => 'can', 'CAN.G881.2' => 'can', 'CANSAT01G3025' => 'cansat', 'CANSAT78G1211' => 'cansat', 'CANSAT78G1218' => 'cansat', 'CANSAT78G1521' => 'cansat', 'CANSAT78G1670' => 'cansat', 'CARHR003600' => 'chi', 'CARHR003610' => 'chi', 'CARHR006290' => 'chi', 'CARHR006430' => 'chi', 'CARHR124110' => 'chi', 'CARHR203870' => 'chi', 'CARHR203880' => 'chi', 'CARHR203890' => 'chi', 'CARHR276880' => 'chi', 'Carub.0001s0346' => 'cru', 'Carub.0001s0347' => 'cru', 'Carub.0001s0607' => 'cru', 'Carub.0003s2768' => 'cru', 'Carub.0003s2769' => 'cru', 'Carub.0004s1178' => 'cru', 'Carub.0006s0806' => 'cru', 'Carub.0006s0807' => 'cru', 'Carub.0006s0808' => 'cru', 'Carub.0008s0501' => 'cru', 'Carub.0008s2379' => 'cru', 'Ca_08655_v3' => 'car', 'Ca_08922_v3' => 'car', 'Ca_08923_v3' => 'car', 'Ca_09119_v3' => 'car', 'Ca_09703_v3' => 'car', 'Ca_09705_v3' => 'car', 'Ca_09835_v3' => 'car', 'Ca_26403_v3' => 'car', 'Ca_30719_v3' => 'car', 'CBR_g17958' => 'cbr', 'CBR_g40516' => 'cbr', 'Cc00_g05350' => 'ccan', 'Cc01_g18690' => 'ccan', 'Cc03_g04830' => 'ccan', 'Cc03_g04850' => 'ccan', 'CDE02G4469' => 'cde', 'CDE06G0883' => 'cde', 'CDE06G1295' => 'cde', 'CDE06G1390' => 'cde', 'CDE07G0584' => 'cde', 'CDE07G1084' => 'cde', 'CDE08G1259' => 'cde', 'Cfa002341' => 'cfa', 'Cfa024337' => 'cfa', 'Ciclev10004749m.g' => 'ccl', 'Ciclev10006127m.g' => 'ccl', 'Ciclev10019720m.g' => 'ccl', 'Ciclev10022652m.g' => 'ccl', 'CiPaw.01G190400' => 'cil', 'CiPaw.01G190500' => 'cil', 'CiPaw.02G116400' => 'cil', 'CiPaw.02G116500' => 'cil', 'CiPaw.04G183000' => 'cil', 'CiPaw.04G183300' => 'cil', 'ClCG05G004610' => 'cla', 'ClCG05G004620' => 'cla', 'ClCG06G006730' => 'cla', 'ClCG06G006740' => 'cla', 'ClCG11G003690' => 'cla', 'COL.COLO4_08276' => 'col', 'COL.COLO4_08277' => 'col', 'COL.COLO4_15787' => 'col', 'COL.COLO4_15789' => 'col', 'Cpa.g.c44815' => 'cpa', 'Cpa.g.sc52.144' => 'cpa', 'Cpa.g.sc58.46' => 'cpa', 'Cpa.g.sc58.47' => 'cpa', 'Cre08.g360900' => 'cre', 'CsaV3_2G013030' => 'csa', 'CsaV3_2G013050' => 'csa', 'CsaV3_2G015620' => 'csa', 'CsaV3_3G012590' => 'csa', 'CsaV3_3G012600' => 'csa', 'CSS0001641' => 'camsi', 'CSS0008310' => 'camsi', 'CSS0013011' => 'camsi', 'CSS0017147' => 'camsi', 'CSS0022970' => 'camsi', 'CSS0025655' => 'camsi', 'CSS0028665' => 'camsi', 'CSS0029117' => 'camsi', 'CSS0032024' => 'camsi', 'CSS0039681' => 'camsi', 'CSS0046516' => 'camsi', 'CSS0050307' => 'camsi', 'DCAR_005871' => 'dca', 'DCAR_007342' => 'dca', 'DCAR_024228' => 'dca', 'DCAR_027277' => 'dca', 'DCAR_030718' => 'dca', 'Dinv20287' => 'din', 'Dinv22461' => 'din', 'Dinv22464' => 'din', 'Dinv29912' => 'din', 'Dinv29913' => 'din', 'Dinv34580' => 'din', 'Dinv34582' => 'din', 'Dinv44632' => 'din', 'Duzib052G0266' => 'dzi', 'Duzib133G0907' => 'dzi', 'Duzib133G1034' => 'dzi', 'Duzib138G0207' => 'dzi', 'Duzib138G0491' => 'dzi', 'Duzib151G0812' => 'dzi', 'Duzib151G1166' => 'dzi', 'Duzib168G0192' => 'dzi', 'Duzib211G0077' => 'dzi', 'Duzib212G0429' => 'dzi', 'Duzib212G0472' => 'dzi', 'ECA233G2617' => 'eca', 'ECA236G4188' => 'eca', 'ECA240G0936' => 'eca', 'ECA240G1129' => 'eca', 'ECA247G0623' => 'eca', 'EL10Ac5g10451' => 'bvu', 'EL10Ac5g10453' => 'bvu', 'EL10Ac5g10894' => 'bvu', 'Eucgr.H00192' => 'egr', 'Eucgr.H00193' => 'egr', 'Eucgr.H00194' => 'egr', 'Eucgr.J01562' => 'egr', 'Eucgr.K03301' => 'egr', 'FAN02G0632' => 'fan', 'FAN05G5378' => 'fan', 'FAN09G3247' => 'fan', 'FAN12G0435' => 'fan', 'FAN12G2426' => 'fan', 'FAN14G1707' => 'fan', 'FAN14G4725' => 'fan', 'FAN15G2071' => 'fan', 'FAN17G3065' => 'fan', 'FAN19G1376' => 'fan', 'FAN20G0354' => 'fan', 'FAN20G2429' => 'fan', 'FAN20G2658' => 'fan', 'FAN24G2343' => 'fan', 'FAN27G2362' => 'fan', 'FAN28G1765' => 'fan', 'FvH4_1g16020' => 'fve', 'FvH4_2g04890' => 'fve', 'FvH4_2g22270' => 'fve', 'FvH4_4g02630' => 'fve', 'FvH4_4g02640' => 'fve', 'FvH4_6g02650' => 'fve', 'Glyma.02G140600' => 'gma', 'Glyma.03G159900' => 'gma', 'Glyma.05G234800' => 'gma', 'Glyma.07G269600' => 'gma', 'Glyma.08G042300' => 'gma', 'Glyma.10G033500' => 'gma', 'Glyma.10G185200' => 'gma', 'Glyma.17G004300' => 'gma', 'Glyma.19G161900' => 'gma', 'Glyma.20G205100' => 'gma', 'Glyma.20G205200' => 'gma', 'Gohir.A01G139101' => 'ghi', 'Gohir.A02G035600' => 'ghi', 'Gohir.A02G117901' => 'ghi', 'Gohir.A07G210100' => 'ghi', 'Gohir.A07G210200' => 'ghi', 'Gohir.A08G061100' => 'ghi', 'Gohir.A09G223000' => 'ghi', 'Gohir.A09G223100' => 'ghi', 'Gohir.A10G113900' => 'ghi', 'Gohir.A10G114000' => 'ghi', 'Gohir.D02G042300' => 'ghi', 'Gohir.D07G216100' => 'ghi', 'Gohir.D07G216200' => 'ghi', 'Gohir.D08G070400' => 'ghi', 'Gohir.D09G225000' => 'ghi', 'Gohir.D09G225100' => 'ghi', 'Gohir.D10G152300' => 'ghi', 'Gohir.D10G153200' => 'ghi', 'Gohir.D11G133701' => 'ghi', 'Gorai.004G074100' => 'gra', 'Gorai.005G046800' => 'gra', 'Gorai.006G246500' => 'gra', 'Gorai.006G246600' => 'gra', 'Gorai.007G142900' => 'gra', 'Gorai.011G171000' => 'gra', 'Gorai.011G171100' => 'gra', 'Gorai.013G104300' => 'gra', 'Gorai.013G104400' => 'gra', 'GSVIVG01000754001' => 'vvi', 'GSVIVG01000756001' => 'vvi', 'GSVIVG01010903001' => 'vvi', 'GSVIVG01017623001' => 'vvi', 'GSVIVG01018113001' => 'vvi', 'GSVIVG01018116001' => 'vvi', 'GSVIVG01018118001' => 'vvi', 'HanXRQChr03g0076211' => 'han', 'HanXRQChr03g0092431' => 'han', 'HanXRQChr03g0092441' => 'han', 'HanXRQChr03g0092591' => 'han', 'HanXRQChr03g0092671' => 'han', 'HanXRQChr03g0092681' => 'han', 'HanXRQChr03g0092691' => 'han', 'HanXRQChr03g0092701' => 'han', 'HanXRQChr03g0092721' => 'han', 'HanXRQChr03g0092731' => 'han', 'HanXRQChr04g0113681' => 'han', 'HanXRQChr10g0281371' => 'han', 'HanXRQChr11g0337141' => 'han', 'HanXRQChr13g0424521' => 'han', 'HanXRQChr13g0424531' => 'han', 'HanXRQChr13g0424541' => 'han', 'HanXRQChr16g0498221' => 'han', 'Haze_04377' => 'cav', 'Haze_11298' => 'cav', 'Haze_24547' => 'cav', 'Haze_24550' => 'cav', 'Haze_26587' => 'cav', 'Hma1.2p1_0650F.1_g195410' => 'hma', 'Hma1.2p1_0893F.1_g233470' => 'hma', 'HPP92_006508' => 'vpl', 'HPP92_024780' => 'vpl', 'Hund02688' => 'sun', 'Hund09380' => 'sun', 'Hund09381' => 'sun', 'Hund09832' => 'sun', 'Hund09833' => 'sun', 'Hund11351' => 'sun', 'Hund11513' => 'sun', 'Lalb_Chr06g0162591' => 'lal', 'Lalb_Chr06g0162601' => 'lal', 'Lalb_Chr06g0169321' => 'lal', 'Lalb_Chr09g0330951' => 'lal', 'Lalb_Chr16g0387631' => 'lal', 'Lalb_Chr21g0306241' => 'lal', 'Lalb_Chr25g0290051' => 'lal', 'Lalb_Chr25g0290061' => 'lal', 'Lalb_Chr25g0290071' => 'lal', 'Lj1g0003876' => 'lja', 'Lj1P1207T36' => 'lonja', 'Lj2C1156G12' => 'lonja', 'Lj3A793G39' => 'lonja', 'Lj3C580G2' => 'lonja', 'Lj3C780G2' => 'lonja', 'Lj3C780T4' => 'lonja', 'Lj3C793G9' => 'lonja', 'Lj4g0012960' => 'lja', 'Lj5g0021252' => 'lja', 'Lj5g0021484' => 'lja', 'Lj5g0024528' => 'lja', 'Lj6A399T12' => 'lonja', 'Lj6A656G65' => 'lonja', 'Lsat_1_v5_gn_3_125500' => 'lsa', 'Lsat_1_v5_gn_3_125540' => 'lsa', 'Lsat_1_v5_gn_5_72701' => 'lsa', 'Lsat_1_v5_gn_8_91560' => 'lsa', 'Lsat_1_v5_gn_9_9640' => 'lsa', 'Manes.01G200600' => 'mes', 'Manes.01G200700' => 'mes', 'Manes.03G168900' => 'mes', 'Manes.03G169000' => 'mes', 'Manes.05G085801' => 'mes', 'Manes.05G086200' => 'mes', 'Manes.15G036700' => 'mes', 'Manes.15G036900' => 'mes', 'Mapoly0004s0172' => 'mpo', 'Mapoly0023s0001' => 'mpo', 'Mapoly0142s0012' => 'mpo', 'MBI01_g32854_MAGBIO' => 'mbi', 'MBI11_g24427_MAGBIO' => 'mbi', 'MBI11_g47319_MAGBIO' => 'mbi', 'MCO01G433' => 'mco', 'MD00G1187800' => 'mdo', 'MD04G1226500' => 'mdo', 'MD05G1203900' => 'mdo', 'MD10G1191100' => 'mdo', 'MD12G1243500' => 'mdo', 'MD13G1207000' => 'mdo', 'MD13G1207100' => 'mdo', 'MD16G1208600' => 'mdo', 'Medtr1g050352' => 'mtr', 'Medtr1g070385' => 'mtr', 'Medtr1g070450' => 'mtr', 'Medtr1g075200' => 'mtr', 'Medtr1g075250' => 'mtr', 'Medtr1g075260' => 'mtr', 'Medtr1g475250' => 'mtr', 'Medtr4g075450' => 'mtr', 'Medtr7g096300' => 'mtr', 'Medtr8g105110' => 'mtr', 'MELO3C006470.2' => 'cme', 'MELO3C006471.2' => 'cme', 'MELO3C020772.2' => 'cme', 'MELO3C026780.2' => 'cme', 'MELO3C026781.2' => 'cme', 'Migut.D00390' => 'egut', 'Migut.G00435' => 'egut', 'Migut.G00436' => 'egut', 'Migut.G00718' => 'egut', 'MSTRG.21891' => 'ama', 'MSTRG.26910' => 'ama', 'MSTRG.4099' => 'ama', 'MSTRG.9925' => 'ama', 'Nitab4.5_0000165g0010' => 'nta', 'Nitab4.5_0000209g0180' => 'nta', 'Nitab4.5_0000244g0440' => 'nta', 'Nitab4.5_0000525g0220' => 'nta', 'Nitab4.5_0001597g0020' => 'nta', 'Nitab4.5_0001878g0040' => 'nta', 'Nitab4.5_0001878g0060' => 'nta', 'Nitab4.5_0002838g0100' => 'nta', 'Nitab4.5_0002838g0120' => 'nta', 'Nitab4.5_0004798g0030' => 'nta', 'Nitab4.5_0005420g0010' => 'nta', 'Nitab4.5_0005507g0010' => 'nta', 'Nitab4.5_0005574g0020' => 'nta', 'Nitab4.5_0005838g0010' => 'nta', 'Nitab4.5_0010580g0020' => 'nta', 'Nn1g02599' => 'nnu', 'Nn1g02608' => 'nnu', 'Nn3g17742' => 'nnu', 'Nn3g19534' => 'nnu', 'Nn3g19535' => 'nnu', 'Oeu008790.1' => 'oeu', 'Oeu008792.1' => 'oeu', 'Oeu032590.1' => 'oeu', 'Oeu035349.1' => 'oeu', 'Oeu049791.1' => 'oeu', 'Os01g0774500' => 'osa', 'Os03g0628800' => 'osa', 'Os03g0798600' => 'osa', 'Os05g0508800' => 'osa', 'Peaxi162Scf00036g02018' => 'pax', 'Peaxi162Scf00578g00032' => 'pax', 'Peaxi162Scf00578g00317' => 'pax', 'Peaxi162Scf00785g00114' => 'pax', 'Peaxi162Scf00813g00119' => 'pax', 'Peaxi162Scf00906g00227' => 'pax', 'PGR004G0875' => 'pgr', 'PGR004G2424' => 'pgr', 'PGR031G1239' => 'pgr', 'PGR031G2474' => 'pgr', 'PGR044G0423' => 'pgr', 'PGSC0003DMG400001128' => 'stu', 'PGSC0003DMG400007336' => 'stu', 'PGSC0003DMG400016318' => 'stu', 'PGSC0003DMG400016319' => 'stu', 'PGSC0003DMG400018074' => 'stu', 'Phvul.001G157700' => 'pvu', 'Phvul.002G148550' => 'pvu', 'Phvul.002G320200' => 'pvu', 'Phvul.003G089200' => 'pvu', 'Phvul.007G126000' => 'pvu', 'Phvul.007G126100' => 'pvu', 'Phvul.007G178000' => 'pvu', 'Phvul.007G178200' => 'pvu', 'Potri.002G043000' => 'ptr', 'Potri.002G043200' => 'ptr', 'Potri.003G123750' => 'ptr', 'Potri.005G055401' => 'ptr', 'Potri.005G219700' => 'ptr', 'Potri.005G220000' => 'ptr', 'Potri.008G161901' => 'ptr', 'Potri.008G162000' => 'ptr', 'Potri.008G162400' => 'ptr', 'Potri.010G076900' => 'ptr', 'Pp3c12_9180' => 'ppa', 'Pp3c13_19770' => 'ppa', 'Pp3c14_22950' => 'ppa', 'Pp3c16_12160' => 'ppa', 'Pp3c27_7820' => 'ppa', 'Pp3c2_3490' => 'ppa', 'Pp3c3_23700' => 'ppa', 'Pp3c3_36520' => 'ppa', 'Pp3c4_15250' => 'ppa', 'PRCOL_00007002' => 'pco', 'Prupe.1G030600' => 'ppe', 'Prupe.1G030700' => 'ppe', 'Prupe.6G345200' => 'ppe', 'Prupe.8G230300' => 'ppe', 'Prupe.8G230500' => 'ppe', 'Psat3g059600' => 'psa', 'Psat5g200920' => 'psa', 'Psat6g056440' => 'psa', 'Psat6g057360' => 'psa', 'Psat6g134120' => 'psa', 'Psat6g134160' => 'psa', 'Psat7g008640' => 'psa', 'Psat7g185240' => 'psa', 'PSO017G1330' => 'pso', 'PSO063G6097' => 'pso', 'PSO170G0835' => 'pso', 'PSO170G2499' => 'pso', 'PSO210G5058' => 'pso', 'PSO210G6154' => 'pso', 'PSO585G0031' => 'pso', 'PSO832G0264' => 'pso', 'PSO832G4288' => 'pso', 'QL03p027355' => 'qlo', 'QL03p027430' => 'qlo', 'QL04p081380' => 'qlo', 'QL06p015642' => 'qlo', 'QL06p015650' => 'qlo', 'QL06p015686' => 'qlo', 'QL12p042927' => 'qlo', 'QL93p1863_0035' => 'qlo', 'RcHm_v2.0_Chr3g0450581' => 'rch', 'RcHm_v2.0_Chr4g0390371' => 'rch', 'RcHm_v2.0_Chr4g0390381' => 'rch', 'RcHm_v2.0_Chr4g0390491' => 'rch', 'RcHm_v2.0_Chr4g0390501' => 'rch', 'RcHm_v2.0_Chr6g0289231' => 'rch', 'Rhsim04G0190400' => 'rsi', 'Rhsim04G0190500' => 'rsi', 'Rhsim04G0190600' => 'rsi', 'Rhsim13G0031400' => 'rsi', 'Rhsim13G0165600' => 'rsi', 'RhsimUnG0114600' => 'rsi', 'RhsimUnG0114700' => 'rsi', 'Sabra02G0034800' => 'sbr', 'Sabra02G0035100' => 'sbr', 'Sabra05G0168600' => 'sbr', 'Sabra05G0168800' => 'sbr', 'Sabra08G0123700' => 'sbr', 'Sabra10G0031900' => 'sbr', 'Sabra13G0039000' => 'sbr', 'SalBow2G0782' => 'sbo', 'SalBow2G1403' => 'sbo', 'SalBow4G0074' => 'sbo', 'SalBow4G2635' => 'sbo', 'SalBow5G3010' => 'sbo', 'Sc05g0000870' => 'sci', 'Sc05g0000890' => 'sci', 'Sc13g0005000' => 'sci', 'Sc13g0005030' => 'sci', 'Sc19g0003790' => 'sci', 'Sc19g0003800' => 'sci', 'Sed0003467' => 'sed', 'Sed0009355' => 'sed', 'Sed0009894' => 'sed', 'Sed0011972' => 'sed', 'Sed0021483' => 'sed', 'Sed0021750' => 'sed', 'Sed0026279' => 'sed', 'SEGI_05312' => 'sgi', 'SEGI_10112' => 'sgi', 'SEGI_15835' => 'sgi', 'SEGI_30386' => 'sgi', 'SEGI_34122' => 'sgi', 'SEGI_35063' => 'sgi', 'SGA_v2.0_scaffold101G29794' => 'sas', 'SGA_v2.0_scaffold1G00573' => 'sas', 'SGA_v2.0_scaffold79G25637' => 'sas', 'SGA_v2.0_scaffold88G27283' => 'sas', 'SGA_v2.0_scaffold88G27285' => 'sas', 'SGA_v2.0_scaffold88G27331' => 'sas', 'SHI09937' => 'shi', 'SMO119G0302' => 'smo', 'SMO137G0231' => 'smo', 'SMO367G1151' => 'smo', 'Solyc02g082000.3' => 'sly', 'Solyc06g031670.3' => 'sly', 'Solyc06g053810.3' => 'sly', 'Solyc07g025457.1' => 'sly', 'Solyc08g059740.1' => 'sly', 'Solyc08g059750.3' => 'sly', 'Solyc09g083370.3' => 'sly', 'Solyc12g038950.3' => 'sly', 'Sopen02g026630' => 'spe', 'Sopen06g018930' => 'spe', 'Sopen06g018940' => 'spe', 'Sopen08g009460' => 'spe', 'Sopen09g032290' => 'spe', 'Sp1g03080' => 'spa', 'Sp1g03090' => 'spa', 'Sp1g05480' => 'spa', 'Sp2g07860' => 'spa', 'Sp2g08430' => 'spa', 'Sp2g08440' => 'spa', 'Sp2g26200' => 'spa', 'Sp4g13170' => 'spa', 'Sp6g33840' => 'spa', 'SpUn1204_0010' => 'spa', 'TAR365G0908' => 'tar', 'TAR381G1270' => 'tar', 'TAR381G1651' => 'tar', 'TAR625G1131' => 'tar', 'TAR633G0962' => 'tar', 'TAR633G1729' => 'tar', 'TAR633G1864' => 'tar', 'TAR636G0221' => 'tar', 'TAR636G0314' => 'tar', 'TAR636G3202' => 'tar', 'THA.LOC104800805' => 'tha', 'THA.LOC104801096' => 'tha', 'THA.LOC104801555' => 'tha', 'THA.LOC104808491' => 'tha', 'THA.LOC104808595' => 'tha', 'THA.LOC104815985' => 'tha', 'THA.LOC104822250' => 'tha', 'THA.LOC104826071' => 'tha', 'Thecc.01G265200' => 'tca', 'Thecc.01G265300' => 'tca', 'Thecc.01G265700' => 'tca', 'Thecc.03G109100' => 'tca', 'Thecc.04G245900' => 'tca', 'Thecc.04G246000' => 'tca', 'Thhalv10003334m.g' => 'esa', 'Thhalv10005508m.g' => 'esa', 'Thhalv10005643m.g' => 'esa', 'Thhalv10007316m.g' => 'esa', 'Thhalv10009006m.g' => 'esa', 'Thhalv10009309m.g' => 'esa', 'Thhalv10014917m.g' => 'esa', 'Thhalv10014919m.g' => 'esa', 'Thhalv10015393m.g' => 'esa', 'Thhalv10016515m.g' => 'esa', 'Thhalv10029242m.g' => 'esa', 'TPR.G16654' => 'tpr', 'TPR.G20589' => 'tpr', 'TPR.G23029' => 'tpr', 'TPR.G27731' => 'tpr', 'TPR.G28889' => 'tpr', 'TPR.G28899' => 'tpr', 'TPR.G30846' => 'tpr', 'TPR.G5452' => 'tpr', 'TPR.G5713' => 'tpr', 'TPR.G9046' => 'tpr', 'TPR.G9061' => 'tpr', 'TWI09G1075' => 'twi', 'TWI12G0806' => 'twi', 'TWI18G0108' => 'twi', 'TWI53G1361' => 'twi', 'TWI73G0185' => 'twi', 'TWI73G0427' => 'twi', 'unitig_37.g12001' => 'ugi', 'unitig_747.g21660' => 'ugi', 'unitig_748.g7232' => 'ugi', 'unitig_748.g7315' => 'ugi', 'unitig_85.g27262' => 'ugi', 'unitig_92.g28220' => 'ugi', 'vmacro02632' => 'vma', 'vmacro08410' => 'vma', 'vmacro08411' => 'vma', 'vmacro15407' => 'vma', 'VMungo0251G3619' => 'vmu', 'VMungo0720G1204' => 'vmu', 'VMungo0720G1918' => 'vmu', 'VMungo0720G2387' => 'vmu', 'VMungo0720G2961' => 'vmu', 'VMungo1215G2154' => 'vmu', 'VMungo1383G2411' => 'vmu', 'Zm00001eb051130' => 'zma', 'Zm00001eb116830' => 'zma', 'Zm00001eb116850' => 'zma', 'Zm00001eb151740' => 'zma', 'Zm00001eb292360' => 'zma', 'Zm00001eb301640' => 'zma' ) $gf_id = 'HOM05D000856' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000856' ) $data_identifier = 'HOM05D000856' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 13, 'ath' => (int) 10, 'atr' => (int) 1, 'acertr' => (int) 8, 'cqu' => (int) 6, 'bca' => (int) 21, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 11, 'car' => (int) 9, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 8, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 5, 'fan' => (int) 16, 'fve' => (int) 6, 'gma' => (int) 11, 'ghi' => (int) 19, 'gra' => (int) 9, 'vvi' => (int) 7, 'han' => (int) 17, 'cav' => (int) 5, 'hma' => (int) 2, 'vpl' => (int) 2, 'sun' => (int) 7, 'lal' => (int) 9, 'lja' => (int) 5, 'lonja' => (int) 9, 'lsa' => (int) 5, 'mes' => (int) 8, 'mpo' => (int) 3, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 10, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 15, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 9, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 9, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 6, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 5, 'spa' => (int) 10, 'tar' => (int) 10, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 11, 'tpr' => (int) 11, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 4, 'vmu' => (int) 7, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb301640' $species_info = array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ) $local_species = 'fan' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000856', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p00010' => 'bna', 'A03p04160' => 'bna', 'A03p17160' => 'bna', 'A04p23370' => 'bna', 'A05p14860' => 'bna', 'A08p37020' => 'bna', 'A09p08050' => 'bna', 'A09p66800' => 'bna', 'A09p67940' => 'bna', 'A10p02680' => 'bna', 'A10p05320' => 'bna', 'Aa31LG1G20560' => 'aar', 'Aa31LG1G20610' => 'aar', 'Aa31LG1G7810' => 'aar', 'Aa31LG5G3590' => 'aar', 'Aa31LG5G6140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3819' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4683' => 'aag', 'Actinidia04480' => 'ach', 'Actinidia05466' => 'ach', 'Actinidia08445' => 'ach', 'Actinidia21170' => 'ach', 'Actinidia24812' => 'ach', 'Actinidia24951' => 'ach', 'Actinidia40088' => 'ach', 'Ah.02g111660' => 'amhyb', 'Ah.11g048900' => 'amhyb', 'Ah.11g049910' => 'amhyb', 'AL1G13870' => 'aly', 'AL1G13880' => 'aly', 'AL1G16760' => 'aly', 'AL390U10020' => 'aly', 'AL4G25520' => 'aly', 'AL6G19890' => 'aly', 'AL6G19900' => 'aly', 'AL6G19910' => 'aly', 'AL8G40100' => 'aly', 'Aqoxy2G03562' => 'aox', 'Aqoxy5G00316' => 'aox', 'Aqoxy5G00926' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1628KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1H403S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2FU6SJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.882I6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8YRY2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YN1SN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AF70II' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZA8L1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F916KL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHRD8H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KTZ8QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S22EMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8M29T' => 'arhy', 'AT1G04270' => 'ath', 'AT1G04280' => 'ath', 'AT1G06750' => 'ath', 'AT1G33850' => 'ath', 'AT2G30630' => 'ath', 'AT5G09490' => 'ath', 'AT5G09500' => 'ath', 'AT5G09510' => 'ath', 'AT5G43640' => 'ath', 'AT5G63070' => 'ath', 'ATR0605G315' => 'atr', 'Atru.chr11.175' => 'acertr', 'Atru.chr11.653' => 'acertr', 'Atru.chr3.1616' => 'acertr', 'Atru.chr4.2230' => 'acertr', 'Atru.chr4.2232' => 'acertr', 'Atru.chr5.1598' => 'acertr', 'Atru.chr5.1600' => 'acertr', 'Atru.chr5.2188' => 'acertr', 'AUR62008326' => 'cqu', 'AUR62011922' => 'cqu', 'AUR62011924' => 'cqu', 'AUR62021771' => 'cqu', 'AUR62032237' => 'cqu', 'AUR62032240' => 'cqu', 'BcaB01g05572' => 'bca', 'BcaB02g10337' => 'bca', 'BcaB04g19944' => 'bca', 'BcaB05g21548' => 'bca', 'BcaB05g21549' => 'bca', 'BcaB05g23227' => 'bca', 'BcaB06g26256' => 'bca', 'BcaB06g26257' => 'bca', 'BcaB06g28379' => 'bca', 'BcaC02g11159' => 'bca', 'BcaC03g13258' => 'bca', 'BcaC03g13259' => 'bca', 'BcaC05g24456' => 'bca', 'BcaC05g24457' => 'bca', 'BcaC07g36922' => 'bca', 'BcaC07g36923' => 'bca', 'BcaC07g42050' => 'bca', 'BcaC07g42176' => 'bca', 'BcaC07g42195' => 'bca', 'BcaC07g42196' => 'bca', 'BcaNung06674' => 'bca', 'BolC2t06351H' => 'bol', 'BolC2t06352H' => 'bol', 'BolC3t12993H' => 'bol', 'BolC4t23525H' => 'bol', 'BolC4t27475H' => 'bol', 'BolC5t29025H' => 'bol', 'BolC5t29026H' => 'bol', 'BolC8t46898H' => 'bol', 'BolC8t46899H' => 'bol', 'BolC8t52630H' => 'bol', 'BolC8t52765H' => 'bol', 'BolC9t53824H' => 'bol', 'BraA03t09760Z' => 'bra', 'BraA03t10990Z' => 'bra', 'BraA05t20413Z' => 'bra', 'BraA08t35602Z' => 'bra', 'BraA09t36458Z' => 'bra', 'BraA09t42018Z' => 'bra', 'BraA09t42129Z' => 'bra', 'BraA10t42536Z' => 'bra', 'BraA10t42537Z' => 'bra', 'C01p10690' => 'bna', 'C02p03890' => 'bna', 'C02p03900' => 'bna', 'C03p04620' => 'bna', 'C04p19870' => 'bna', 'C04p59670' => 'bna', 'C05p02460' => 'bna', 'C05p02470' => 'bna', 'C08p00980' => 'bna', 'C08p00990' => 'bna', 'C08p51030' => 'bna', 'C08p52360' => 'bna', 'C09p09120' => 'bna', 'CAN.G19.15' => 'can', 'CAN.G251.10' => 'can', 'CAN.G251.9' => 'can', 'CAN.G398.24' => 'can', 'CAN.G410.32' => 'can', 'CAN.G881.2' => 'can', 'CANSAT01G3025' => 'cansat', 'CANSAT78G1211' => 'cansat', 'CANSAT78G1218' => 'cansat', 'CANSAT78G1521' => 'cansat', 'CANSAT78G1670' => 'cansat', 'CARHR003600' => 'chi', 'CARHR003610' => 'chi', 'CARHR006290' => 'chi', 'CARHR006430' => 'chi', 'CARHR124110' => 'chi', 'CARHR203870' => 'chi', 'CARHR203880' => 'chi', 'CARHR203890' => 'chi', 'CARHR276880' => 'chi', 'Carub.0001s0346' => 'cru', 'Carub.0001s0347' => 'cru', 'Carub.0001s0607' => 'cru', 'Carub.0003s2768' => 'cru', 'Carub.0003s2769' => 'cru', 'Carub.0004s1178' => 'cru', 'Carub.0006s0806' => 'cru', 'Carub.0006s0807' => 'cru', 'Carub.0006s0808' => 'cru', 'Carub.0008s0501' => 'cru', 'Carub.0008s2379' => 'cru', 'Ca_08655_v3' => 'car', 'Ca_08922_v3' => 'car', 'Ca_08923_v3' => 'car', 'Ca_09119_v3' => 'car', 'Ca_09703_v3' => 'car', 'Ca_09705_v3' => 'car', 'Ca_09835_v3' => 'car', 'Ca_26403_v3' => 'car', 'Ca_30719_v3' => 'car', 'CBR_g17958' => 'cbr', 'CBR_g40516' => 'cbr', 'Cc00_g05350' => 'ccan', 'Cc01_g18690' => 'ccan', 'Cc03_g04830' => 'ccan', 'Cc03_g04850' => 'ccan', 'CDE02G4469' => 'cde', 'CDE06G0883' => 'cde', 'CDE06G1295' => 'cde', 'CDE06G1390' => 'cde', 'CDE07G0584' => 'cde', 'CDE07G1084' => 'cde', 'CDE08G1259' => 'cde', 'Cfa002341' => 'cfa', 'Cfa024337' => 'cfa', 'Ciclev10004749m.g' => 'ccl', 'Ciclev10006127m.g' => 'ccl', 'Ciclev10019720m.g' => 'ccl', 'Ciclev10022652m.g' => 'ccl', 'CiPaw.01G190400' => 'cil', 'CiPaw.01G190500' => 'cil', 'CiPaw.02G116400' => 'cil', 'CiPaw.02G116500' => 'cil', 'CiPaw.04G183000' => 'cil', 'CiPaw.04G183300' => 'cil', 'ClCG05G004610' => 'cla', 'ClCG05G004620' => 'cla', 'ClCG06G006730' => 'cla', 'ClCG06G006740' => 'cla', 'ClCG11G003690' => 'cla', 'COL.COLO4_08276' => 'col', 'COL.COLO4_08277' => 'col', 'COL.COLO4_15787' => 'col', 'COL.COLO4_15789' => 'col', 'Cpa.g.c44815' => 'cpa', 'Cpa.g.sc52.144' => 'cpa', 'Cpa.g.sc58.46' => 'cpa', 'Cpa.g.sc58.47' => 'cpa', 'Cre08.g360900' => 'cre', 'CsaV3_2G013030' => 'csa', 'CsaV3_2G013050' => 'csa', 'CsaV3_2G015620' => 'csa', 'CsaV3_3G012590' => 'csa', 'CsaV3_3G012600' => 'csa', 'CSS0001641' => 'camsi', 'CSS0008310' => 'camsi', 'CSS0013011' => 'camsi', 'CSS0017147' => 'camsi', 'CSS0022970' => 'camsi', 'CSS0025655' => 'camsi', 'CSS0028665' => 'camsi', 'CSS0029117' => 'camsi', 'CSS0032024' => 'camsi', 'CSS0039681' => 'camsi', 'CSS0046516' => 'camsi', 'CSS0050307' => 'camsi', 'DCAR_005871' => 'dca', 'DCAR_007342' => 'dca', 'DCAR_024228' => 'dca', 'DCAR_027277' => 'dca', 'DCAR_030718' => 'dca', 'Dinv20287' => 'din', 'Dinv22461' => 'din', 'Dinv22464' => 'din', 'Dinv29912' => 'din', 'Dinv29913' => 'din', 'Dinv34580' => 'din', 'Dinv34582' => 'din', 'Dinv44632' => 'din', 'Duzib052G0266' => 'dzi', 'Duzib133G0907' => 'dzi', 'Duzib133G1034' => 'dzi', 'Duzib138G0207' => 'dzi', 'Duzib138G0491' => 'dzi', 'Duzib151G0812' => 'dzi', 'Duzib151G1166' => 'dzi', 'Duzib168G0192' => 'dzi', 'Duzib211G0077' => 'dzi', 'Duzib212G0429' => 'dzi', 'Duzib212G0472' => 'dzi', 'ECA233G2617' => 'eca', 'ECA236G4188' => 'eca', 'ECA240G0936' => 'eca', 'ECA240G1129' => 'eca', 'ECA247G0623' => 'eca', 'EL10Ac5g10451' => 'bvu', 'EL10Ac5g10453' => 'bvu', 'EL10Ac5g10894' => 'bvu', 'Eucgr.H00192' => 'egr', 'Eucgr.H00193' => 'egr', 'Eucgr.H00194' => 'egr', 'Eucgr.J01562' => 'egr', 'Eucgr.K03301' => 'egr', 'FAN02G0632' => 'fan', 'FAN05G5378' => 'fan', 'FAN09G3247' => 'fan', 'FAN12G0435' => 'fan', 'FAN12G2426' => 'fan', 'FAN14G1707' => 'fan', 'FAN14G4725' => 'fan', 'FAN15G2071' => 'fan', 'FAN17G3065' => 'fan', 'FAN19G1376' => 'fan', 'FAN20G0354' => 'fan', 'FAN20G2429' => 'fan', 'FAN20G2658' => 'fan', 'FAN24G2343' => 'fan', 'FAN27G2362' => 'fan', 'FAN28G1765' => 'fan', 'FvH4_1g16020' => 'fve', 'FvH4_2g04890' => 'fve', 'FvH4_2g22270' => 'fve', 'FvH4_4g02630' => 'fve', 'FvH4_4g02640' => 'fve', 'FvH4_6g02650' => 'fve', 'Glyma.02G140600' => 'gma', 'Glyma.03G159900' => 'gma', 'Glyma.05G234800' => 'gma', 'Glyma.07G269600' => 'gma', 'Glyma.08G042300' => 'gma', 'Glyma.10G033500' => 'gma', 'Glyma.10G185200' => 'gma', 'Glyma.17G004300' => 'gma', 'Glyma.19G161900' => 'gma', 'Glyma.20G205100' => 'gma', 'Glyma.20G205200' => 'gma', 'Gohir.A01G139101' => 'ghi', 'Gohir.A02G035600' => 'ghi', 'Gohir.A02G117901' => 'ghi', 'Gohir.A07G210100' => 'ghi', 'Gohir.A07G210200' => 'ghi', 'Gohir.A08G061100' => 'ghi', 'Gohir.A09G223000' => 'ghi', 'Gohir.A09G223100' => 'ghi', 'Gohir.A10G113900' => 'ghi', 'Gohir.A10G114000' => 'ghi', 'Gohir.D02G042300' => 'ghi', 'Gohir.D07G216100' => 'ghi', 'Gohir.D07G216200' => 'ghi', 'Gohir.D08G070400' => 'ghi', 'Gohir.D09G225000' => 'ghi', 'Gohir.D09G225100' => 'ghi', 'Gohir.D10G152300' => 'ghi', 'Gohir.D10G153200' => 'ghi', 'Gohir.D11G133701' => 'ghi', 'Gorai.004G074100' => 'gra', 'Gorai.005G046800' => 'gra', 'Gorai.006G246500' => 'gra', 'Gorai.006G246600' => 'gra', 'Gorai.007G142900' => 'gra', 'Gorai.011G171000' => 'gra', 'Gorai.011G171100' => 'gra', 'Gorai.013G104300' => 'gra', 'Gorai.013G104400' => 'gra', 'GSVIVG01000754001' => 'vvi', 'GSVIVG01000756001' => 'vvi', 'GSVIVG01010903001' => 'vvi', 'GSVIVG01017623001' => 'vvi', 'GSVIVG01018113001' => 'vvi', 'GSVIVG01018116001' => 'vvi', 'GSVIVG01018118001' => 'vvi', 'HanXRQChr03g0076211' => 'han', 'HanXRQChr03g0092431' => 'han', 'HanXRQChr03g0092441' => 'han', 'HanXRQChr03g0092591' => 'han', 'HanXRQChr03g0092671' => 'han', 'HanXRQChr03g0092681' => 'han', 'HanXRQChr03g0092691' => 'han', 'HanXRQChr03g0092701' => 'han', 'HanXRQChr03g0092721' => 'han', 'HanXRQChr03g0092731' => 'han', 'HanXRQChr04g0113681' => 'han', 'HanXRQChr10g0281371' => 'han', 'HanXRQChr11g0337141' => 'han', 'HanXRQChr13g0424521' => 'han', 'HanXRQChr13g0424531' => 'han', 'HanXRQChr13g0424541' => 'han', 'HanXRQChr16g0498221' => 'han', 'Haze_04377' => 'cav', 'Haze_11298' => 'cav', 'Haze_24547' => 'cav', 'Haze_24550' => 'cav', 'Haze_26587' => 'cav', 'Hma1.2p1_0650F.1_g195410' => 'hma', 'Hma1.2p1_0893F.1_g233470' => 'hma', 'HPP92_006508' => 'vpl', 'HPP92_024780' => 'vpl', 'Hund02688' => 'sun', 'Hund09380' => 'sun', 'Hund09381' => 'sun', 'Hund09832' => 'sun', 'Hund09833' => 'sun', 'Hund11351' => 'sun', 'Hund11513' => 'sun', 'Lalb_Chr06g0162591' => 'lal', 'Lalb_Chr06g0162601' => 'lal', 'Lalb_Chr06g0169321' => 'lal', 'Lalb_Chr09g0330951' => 'lal', 'Lalb_Chr16g0387631' => 'lal', 'Lalb_Chr21g0306241' => 'lal', 'Lalb_Chr25g0290051' => 'lal', 'Lalb_Chr25g0290061' => 'lal', 'Lalb_Chr25g0290071' => 'lal', 'Lj1g0003876' => 'lja', 'Lj1P1207T36' => 'lonja', 'Lj2C1156G12' => 'lonja', 'Lj3A793G39' => 'lonja', 'Lj3C580G2' => 'lonja', 'Lj3C780G2' => 'lonja', 'Lj3C780T4' => 'lonja', 'Lj3C793G9' => 'lonja', 'Lj4g0012960' => 'lja', 'Lj5g0021252' => 'lja', 'Lj5g0021484' => 'lja', 'Lj5g0024528' => 'lja', 'Lj6A399T12' => 'lonja', 'Lj6A656G65' => 'lonja', 'Lsat_1_v5_gn_3_125500' => 'lsa', 'Lsat_1_v5_gn_3_125540' => 'lsa', 'Lsat_1_v5_gn_5_72701' => 'lsa', 'Lsat_1_v5_gn_8_91560' => 'lsa', 'Lsat_1_v5_gn_9_9640' => 'lsa', 'Manes.01G200600' => 'mes', 'Manes.01G200700' => 'mes', 'Manes.03G168900' => 'mes', 'Manes.03G169000' => 'mes', 'Manes.05G085801' => 'mes', 'Manes.05G086200' => 'mes', 'Manes.15G036700' => 'mes', 'Manes.15G036900' => 'mes', 'Mapoly0004s0172' => 'mpo', 'Mapoly0023s0001' => 'mpo', 'Mapoly0142s0012' => 'mpo', 'MBI01_g32854_MAGBIO' => 'mbi', 'MBI11_g24427_MAGBIO' => 'mbi', 'MBI11_g47319_MAGBIO' => 'mbi', 'MCO01G433' => 'mco', 'MD00G1187800' => 'mdo', 'MD04G1226500' => 'mdo', 'MD05G1203900' => 'mdo', 'MD10G1191100' => 'mdo', 'MD12G1243500' => 'mdo', 'MD13G1207000' => 'mdo', 'MD13G1207100' => 'mdo', 'MD16G1208600' => 'mdo', 'Medtr1g050352' => 'mtr', 'Medtr1g070385' => 'mtr', 'Medtr1g070450' => 'mtr', 'Medtr1g075200' => 'mtr', 'Medtr1g075250' => 'mtr', 'Medtr1g075260' => 'mtr', 'Medtr1g475250' => 'mtr', 'Medtr4g075450' => 'mtr', 'Medtr7g096300' => 'mtr', 'Medtr8g105110' => 'mtr', 'MELO3C006470.2' => 'cme', 'MELO3C006471.2' => 'cme', 'MELO3C020772.2' => 'cme', 'MELO3C026780.2' => 'cme', 'MELO3C026781.2' => 'cme', 'Migut.D00390' => 'egut', 'Migut.G00435' => 'egut', 'Migut.G00436' => 'egut', 'Migut.G00718' => 'egut', 'MSTRG.21891' => 'ama', 'MSTRG.26910' => 'ama', 'MSTRG.4099' => 'ama', 'MSTRG.9925' => 'ama', 'Nitab4.5_0000165g0010' => 'nta', 'Nitab4.5_0000209g0180' => 'nta', 'Nitab4.5_0000244g0440' => 'nta', 'Nitab4.5_0000525g0220' => 'nta', 'Nitab4.5_0001597g0020' => 'nta', 'Nitab4.5_0001878g0040' => 'nta', 'Nitab4.5_0001878g0060' => 'nta', 'Nitab4.5_0002838g0100' => 'nta', 'Nitab4.5_0002838g0120' => 'nta', 'Nitab4.5_0004798g0030' => 'nta', 'Nitab4.5_0005420g0010' => 'nta', 'Nitab4.5_0005507g0010' => 'nta', 'Nitab4.5_0005574g0020' => 'nta', 'Nitab4.5_0005838g0010' => 'nta', 'Nitab4.5_0010580g0020' => 'nta', 'Nn1g02599' => 'nnu', 'Nn1g02608' => 'nnu', 'Nn3g17742' => 'nnu', 'Nn3g19534' => 'nnu', 'Nn3g19535' => 'nnu', 'Oeu008790.1' => 'oeu', 'Oeu008792.1' => 'oeu', 'Oeu032590.1' => 'oeu', 'Oeu035349.1' => 'oeu', 'Oeu049791.1' => 'oeu', 'Os01g0774500' => 'osa', 'Os03g0628800' => 'osa', 'Os03g0798600' => 'osa', 'Os05g0508800' => 'osa', 'Peaxi162Scf00036g02018' => 'pax', 'Peaxi162Scf00578g00032' => 'pax', 'Peaxi162Scf00578g00317' => 'pax', 'Peaxi162Scf00785g00114' => 'pax', 'Peaxi162Scf00813g00119' => 'pax', 'Peaxi162Scf00906g00227' => 'pax', 'PGR004G0875' => 'pgr', 'PGR004G2424' => 'pgr', 'PGR031G1239' => 'pgr', 'PGR031G2474' => 'pgr', 'PGR044G0423' => 'pgr', 'PGSC0003DMG400001128' => 'stu', 'PGSC0003DMG400007336' => 'stu', 'PGSC0003DMG400016318' => 'stu', 'PGSC0003DMG400016319' => 'stu', 'PGSC0003DMG400018074' => 'stu', 'Phvul.001G157700' => 'pvu', 'Phvul.002G148550' => 'pvu', 'Phvul.002G320200' => 'pvu', 'Phvul.003G089200' => 'pvu', 'Phvul.007G126000' => 'pvu', 'Phvul.007G126100' => 'pvu', 'Phvul.007G178000' => 'pvu', 'Phvul.007G178200' => 'pvu', 'Potri.002G043000' => 'ptr', 'Potri.002G043200' => 'ptr', 'Potri.003G123750' => 'ptr', 'Potri.005G055401' => 'ptr', 'Potri.005G219700' => 'ptr', 'Potri.005G220000' => 'ptr', 'Potri.008G161901' => 'ptr', 'Potri.008G162000' => 'ptr', 'Potri.008G162400' => 'ptr', 'Potri.010G076900' => 'ptr', 'Pp3c12_9180' => 'ppa', 'Pp3c13_19770' => 'ppa', 'Pp3c14_22950' => 'ppa', 'Pp3c16_12160' => 'ppa', 'Pp3c27_7820' => 'ppa', 'Pp3c2_3490' => 'ppa', 'Pp3c3_23700' => 'ppa', 'Pp3c3_36520' => 'ppa', 'Pp3c4_15250' => 'ppa', 'PRCOL_00007002' => 'pco', 'Prupe.1G030600' => 'ppe', 'Prupe.1G030700' => 'ppe', 'Prupe.6G345200' => 'ppe', 'Prupe.8G230300' => 'ppe', 'Prupe.8G230500' => 'ppe', 'Psat3g059600' => 'psa', 'Psat5g200920' => 'psa', 'Psat6g056440' => 'psa', 'Psat6g057360' => 'psa', 'Psat6g134120' => 'psa', 'Psat6g134160' => 'psa', 'Psat7g008640' => 'psa', 'Psat7g185240' => 'psa', 'PSO017G1330' => 'pso', 'PSO063G6097' => 'pso', 'PSO170G0835' => 'pso', 'PSO170G2499' => 'pso', 'PSO210G5058' => 'pso', 'PSO210G6154' => 'pso', 'PSO585G0031' => 'pso', 'PSO832G0264' => 'pso', 'PSO832G4288' => 'pso', 'QL03p027355' => 'qlo', 'QL03p027430' => 'qlo', 'QL04p081380' => 'qlo', 'QL06p015642' => 'qlo', 'QL06p015650' => 'qlo', 'QL06p015686' => 'qlo', 'QL12p042927' => 'qlo', 'QL93p1863_0035' => 'qlo', 'RcHm_v2.0_Chr3g0450581' => 'rch', 'RcHm_v2.0_Chr4g0390371' => 'rch', 'RcHm_v2.0_Chr4g0390381' => 'rch', 'RcHm_v2.0_Chr4g0390491' => 'rch', 'RcHm_v2.0_Chr4g0390501' => 'rch', 'RcHm_v2.0_Chr6g0289231' => 'rch', 'Rhsim04G0190400' => 'rsi', 'Rhsim04G0190500' => 'rsi', 'Rhsim04G0190600' => 'rsi', 'Rhsim13G0031400' => 'rsi', 'Rhsim13G0165600' => 'rsi', 'RhsimUnG0114600' => 'rsi', 'RhsimUnG0114700' => 'rsi', 'Sabra02G0034800' => 'sbr', 'Sabra02G0035100' => 'sbr', 'Sabra05G0168600' => 'sbr', 'Sabra05G0168800' => 'sbr', 'Sabra08G0123700' => 'sbr', 'Sabra10G0031900' => 'sbr', 'Sabra13G0039000' => 'sbr', 'SalBow2G0782' => 'sbo', 'SalBow2G1403' => 'sbo', 'SalBow4G0074' => 'sbo', 'SalBow4G2635' => 'sbo', 'SalBow5G3010' => 'sbo', 'Sc05g0000870' => 'sci', 'Sc05g0000890' => 'sci', 'Sc13g0005000' => 'sci', 'Sc13g0005030' => 'sci', 'Sc19g0003790' => 'sci', 'Sc19g0003800' => 'sci', 'Sed0003467' => 'sed', 'Sed0009355' => 'sed', 'Sed0009894' => 'sed', 'Sed0011972' => 'sed', 'Sed0021483' => 'sed', 'Sed0021750' => 'sed', 'Sed0026279' => 'sed', 'SEGI_05312' => 'sgi', 'SEGI_10112' => 'sgi', 'SEGI_15835' => 'sgi', 'SEGI_30386' => 'sgi', 'SEGI_34122' => 'sgi', 'SEGI_35063' => 'sgi', 'SGA_v2.0_scaffold101G29794' => 'sas', 'SGA_v2.0_scaffold1G00573' => 'sas', 'SGA_v2.0_scaffold79G25637' => 'sas', 'SGA_v2.0_scaffold88G27283' => 'sas', 'SGA_v2.0_scaffold88G27285' => 'sas', 'SGA_v2.0_scaffold88G27331' => 'sas', 'SHI09937' => 'shi', 'SMO119G0302' => 'smo', 'SMO137G0231' => 'smo', 'SMO367G1151' => 'smo', 'Solyc02g082000.3' => 'sly', 'Solyc06g031670.3' => 'sly', 'Solyc06g053810.3' => 'sly', 'Solyc07g025457.1' => 'sly', 'Solyc08g059740.1' => 'sly', 'Solyc08g059750.3' => 'sly', 'Solyc09g083370.3' => 'sly', 'Solyc12g038950.3' => 'sly', 'Sopen02g026630' => 'spe', 'Sopen06g018930' => 'spe', 'Sopen06g018940' => 'spe', 'Sopen08g009460' => 'spe', 'Sopen09g032290' => 'spe', 'Sp1g03080' => 'spa', 'Sp1g03090' => 'spa', 'Sp1g05480' => 'spa', 'Sp2g07860' => 'spa', 'Sp2g08430' => 'spa', 'Sp2g08440' => 'spa', 'Sp2g26200' => 'spa', 'Sp4g13170' => 'spa', 'Sp6g33840' => 'spa', 'SpUn1204_0010' => 'spa', 'TAR365G0908' => 'tar', 'TAR381G1270' => 'tar', 'TAR381G1651' => 'tar', 'TAR625G1131' => 'tar', 'TAR633G0962' => 'tar', 'TAR633G1729' => 'tar', 'TAR633G1864' => 'tar', 'TAR636G0221' => 'tar', 'TAR636G0314' => 'tar', 'TAR636G3202' => 'tar', 'THA.LOC104800805' => 'tha', 'THA.LOC104801096' => 'tha', 'THA.LOC104801555' => 'tha', 'THA.LOC104808491' => 'tha', 'THA.LOC104808595' => 'tha', 'THA.LOC104815985' => 'tha', 'THA.LOC104822250' => 'tha', 'THA.LOC104826071' => 'tha', 'Thecc.01G265200' => 'tca', 'Thecc.01G265300' => 'tca', 'Thecc.01G265700' => 'tca', 'Thecc.03G109100' => 'tca', 'Thecc.04G245900' => 'tca', 'Thecc.04G246000' => 'tca', 'Thhalv10003334m.g' => 'esa', 'Thhalv10005508m.g' => 'esa', 'Thhalv10005643m.g' => 'esa', 'Thhalv10007316m.g' => 'esa', 'Thhalv10009006m.g' => 'esa', 'Thhalv10009309m.g' => 'esa', 'Thhalv10014917m.g' => 'esa', 'Thhalv10014919m.g' => 'esa', 'Thhalv10015393m.g' => 'esa', 'Thhalv10016515m.g' => 'esa', 'Thhalv10029242m.g' => 'esa', 'TPR.G16654' => 'tpr', 'TPR.G20589' => 'tpr', 'TPR.G23029' => 'tpr', 'TPR.G27731' => 'tpr', 'TPR.G28889' => 'tpr', 'TPR.G28899' => 'tpr', 'TPR.G30846' => 'tpr', 'TPR.G5452' => 'tpr', 'TPR.G5713' => 'tpr', 'TPR.G9046' => 'tpr', 'TPR.G9061' => 'tpr', 'TWI09G1075' => 'twi', 'TWI12G0806' => 'twi', 'TWI18G0108' => 'twi', 'TWI53G1361' => 'twi', 'TWI73G0185' => 'twi', 'TWI73G0427' => 'twi', 'unitig_37.g12001' => 'ugi', 'unitig_747.g21660' => 'ugi', 'unitig_748.g7232' => 'ugi', 'unitig_748.g7315' => 'ugi', 'unitig_85.g27262' => 'ugi', 'unitig_92.g28220' => 'ugi', 'vmacro02632' => 'vma', 'vmacro08410' => 'vma', 'vmacro08411' => 'vma', 'vmacro15407' => 'vma', 'VMungo0251G3619' => 'vmu', 'VMungo0720G1204' => 'vmu', 'VMungo0720G1918' => 'vmu', 'VMungo0720G2387' => 'vmu', 'VMungo0720G2961' => 'vmu', 'VMungo1215G2154' => 'vmu', 'VMungo1383G2411' => 'vmu', 'Zm00001eb051130' => 'zma', 'Zm00001eb116830' => 'zma', 'Zm00001eb116850' => 'zma', 'Zm00001eb151740' => 'zma', 'Zm00001eb292360' => 'zma', 'Zm00001eb301640' => 'zma' ), 'gf_id' => 'HOM05D000856', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000856' ), 'data_identifier' => 'HOM05D000856', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000856', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p00010' => 'bna', 'A03p04160' => 'bna', 'A03p17160' => 'bna', 'A04p23370' => 'bna', 'A05p14860' => 'bna', 'A08p37020' => 'bna', 'A09p08050' => 'bna', 'A09p66800' => 'bna', 'A09p67940' => 'bna', 'A10p02680' => 'bna', 'A10p05320' => 'bna', 'Aa31LG1G20560' => 'aar', 'Aa31LG1G20610' => 'aar', 'Aa31LG1G7810' => 'aar', 'Aa31LG5G3590' => 'aar', 'Aa31LG5G6140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3819' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4683' => 'aag', 'Actinidia04480' => 'ach', 'Actinidia05466' => 'ach', 'Actinidia08445' => 'ach', 'Actinidia21170' => 'ach', 'Actinidia24812' => 'ach', 'Actinidia24951' => 'ach', 'Actinidia40088' => 'ach', 'Ah.02g111660' => 'amhyb', 'Ah.11g048900' => 'amhyb', 'Ah.11g049910' => 'amhyb', 'AL1G13870' => 'aly', 'AL1G13880' => 'aly', 'AL1G16760' => 'aly', 'AL390U10020' => 'aly', 'AL4G25520' => 'aly', 'AL6G19890' => 'aly', 'AL6G19900' => 'aly', 'AL6G19910' => 'aly', 'AL8G40100' => 'aly', 'Aqoxy2G03562' => 'aox', 'Aqoxy5G00316' => 'aox', 'Aqoxy5G00926' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1628KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1H403S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2FU6SJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.882I6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8YRY2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YN1SN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AF70II' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZA8L1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F916KL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHRD8H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KTZ8QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S22EMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8M29T' => 'arhy', 'AT1G04270' => 'ath', 'AT1G04280' => 'ath', 'AT1G06750' => 'ath', 'AT1G33850' => 'ath', 'AT2G30630' => 'ath', 'AT5G09490' => 'ath', 'AT5G09500' => 'ath', 'AT5G09510' => 'ath', 'AT5G43640' => 'ath', 'AT5G63070' => 'ath', 'ATR0605G315' => 'atr', 'Atru.chr11.175' => 'acertr', 'Atru.chr11.653' => 'acertr', 'Atru.chr3.1616' => 'acertr', 'Atru.chr4.2230' => 'acertr', 'Atru.chr4.2232' => 'acertr', 'Atru.chr5.1598' => 'acertr', 'Atru.chr5.1600' => 'acertr', 'Atru.chr5.2188' => 'acertr', 'AUR62008326' => 'cqu', 'AUR62011922' => 'cqu', 'AUR62011924' => 'cqu', 'AUR62021771' => 'cqu', 'AUR62032237' => 'cqu', 'AUR62032240' => 'cqu', 'BcaB01g05572' => 'bca', 'BcaB02g10337' => 'bca', 'BcaB04g19944' => 'bca', 'BcaB05g21548' => 'bca', 'BcaB05g21549' => 'bca', 'BcaB05g23227' => 'bca', 'BcaB06g26256' => 'bca', 'BcaB06g26257' => 'bca', 'BcaB06g28379' => 'bca', 'BcaC02g11159' => 'bca', 'BcaC03g13258' => 'bca', 'BcaC03g13259' => 'bca', 'BcaC05g24456' => 'bca', 'BcaC05g24457' => 'bca', 'BcaC07g36922' => 'bca', 'BcaC07g36923' => 'bca', 'BcaC07g42050' => 'bca', 'BcaC07g42176' => 'bca', 'BcaC07g42195' => 'bca', 'BcaC07g42196' => 'bca', 'BcaNung06674' => 'bca', 'BolC2t06351H' => 'bol', 'BolC2t06352H' => 'bol', 'BolC3t12993H' => 'bol', 'BolC4t23525H' => 'bol', 'BolC4t27475H' => 'bol', 'BolC5t29025H' => 'bol', 'BolC5t29026H' => 'bol', 'BolC8t46898H' => 'bol', 'BolC8t46899H' => 'bol', 'BolC8t52630H' => 'bol', 'BolC8t52765H' => 'bol', 'BolC9t53824H' => 'bol', 'BraA03t09760Z' => 'bra', 'BraA03t10990Z' => 'bra', 'BraA05t20413Z' => 'bra', 'BraA08t35602Z' => 'bra', 'BraA09t36458Z' => 'bra', 'BraA09t42018Z' => 'bra', 'BraA09t42129Z' => 'bra', 'BraA10t42536Z' => 'bra', 'BraA10t42537Z' => 'bra', 'C01p10690' => 'bna', 'C02p03890' => 'bna', 'C02p03900' => 'bna', 'C03p04620' => 'bna', 'C04p19870' => 'bna', 'C04p59670' => 'bna', 'C05p02460' => 'bna', 'C05p02470' => 'bna', 'C08p00980' => 'bna', 'C08p00990' => 'bna', 'C08p51030' => 'bna', 'C08p52360' => 'bna', 'C09p09120' => 'bna', 'CAN.G19.15' => 'can', 'CAN.G251.10' => 'can', 'CAN.G251.9' => 'can', 'CAN.G398.24' => 'can', 'CAN.G410.32' => 'can', 'CAN.G881.2' => 'can', 'CANSAT01G3025' => 'cansat', 'CANSAT78G1211' => 'cansat', 'CANSAT78G1218' => 'cansat', 'CANSAT78G1521' => 'cansat', 'CANSAT78G1670' => 'cansat', 'CARHR003600' => 'chi', 'CARHR003610' => 'chi', 'CARHR006290' => 'chi', 'CARHR006430' => 'chi', 'CARHR124110' => 'chi', 'CARHR203870' => 'chi', 'CARHR203880' => 'chi', 'CARHR203890' => 'chi', 'CARHR276880' => 'chi', 'Carub.0001s0346' => 'cru', 'Carub.0001s0347' => 'cru', 'Carub.0001s0607' => 'cru', 'Carub.0003s2768' => 'cru', 'Carub.0003s2769' => 'cru', 'Carub.0004s1178' => 'cru', 'Carub.0006s0806' => 'cru', 'Carub.0006s0807' => 'cru', 'Carub.0006s0808' => 'cru', 'Carub.0008s0501' => 'cru', 'Carub.0008s2379' => 'cru', 'Ca_08655_v3' => 'car', 'Ca_08922_v3' => 'car', 'Ca_08923_v3' => 'car', 'Ca_09119_v3' => 'car', 'Ca_09703_v3' => 'car', 'Ca_09705_v3' => 'car', 'Ca_09835_v3' => 'car', 'Ca_26403_v3' => 'car', 'Ca_30719_v3' => 'car', 'CBR_g17958' => 'cbr', 'CBR_g40516' => 'cbr', 'Cc00_g05350' => 'ccan', 'Cc01_g18690' => 'ccan', 'Cc03_g04830' => 'ccan', 'Cc03_g04850' => 'ccan', 'CDE02G4469' => 'cde', 'CDE06G0883' => 'cde', 'CDE06G1295' => 'cde', 'CDE06G1390' => 'cde', 'CDE07G0584' => 'cde', 'CDE07G1084' => 'cde', 'CDE08G1259' => 'cde', 'Cfa002341' => 'cfa', 'Cfa024337' => 'cfa', 'Ciclev10004749m.g' => 'ccl', 'Ciclev10006127m.g' => 'ccl', 'Ciclev10019720m.g' => 'ccl', 'Ciclev10022652m.g' => 'ccl', 'CiPaw.01G190400' => 'cil', 'CiPaw.01G190500' => 'cil', 'CiPaw.02G116400' => 'cil', 'CiPaw.02G116500' => 'cil', 'CiPaw.04G183000' => 'cil', 'CiPaw.04G183300' => 'cil', 'ClCG05G004610' => 'cla', 'ClCG05G004620' => 'cla', 'ClCG06G006730' => 'cla', 'ClCG06G006740' => 'cla', 'ClCG11G003690' => 'cla', 'COL.COLO4_08276' => 'col', 'COL.COLO4_08277' => 'col', 'COL.COLO4_15787' => 'col', 'COL.COLO4_15789' => 'col', 'Cpa.g.c44815' => 'cpa', 'Cpa.g.sc52.144' => 'cpa', 'Cpa.g.sc58.46' => 'cpa', 'Cpa.g.sc58.47' => 'cpa', 'Cre08.g360900' => 'cre', 'CsaV3_2G013030' => 'csa', 'CsaV3_2G013050' => 'csa', 'CsaV3_2G015620' => 'csa', 'CsaV3_3G012590' => 'csa', 'CsaV3_3G012600' => 'csa', 'CSS0001641' => 'camsi', 'CSS0008310' => 'camsi', 'CSS0013011' => 'camsi', 'CSS0017147' => 'camsi', 'CSS0022970' => 'camsi', 'CSS0025655' => 'camsi', 'CSS0028665' => 'camsi', 'CSS0029117' => 'camsi', 'CSS0032024' => 'camsi', 'CSS0039681' => 'camsi', 'CSS0046516' => 'camsi', 'CSS0050307' => 'camsi', 'DCAR_005871' => 'dca', 'DCAR_007342' => 'dca', 'DCAR_024228' => 'dca', 'DCAR_027277' => 'dca', 'DCAR_030718' => 'dca', 'Dinv20287' => 'din', 'Dinv22461' => 'din', 'Dinv22464' => 'din', 'Dinv29912' => 'din', 'Dinv29913' => 'din', 'Dinv34580' => 'din', 'Dinv34582' => 'din', 'Dinv44632' => 'din', 'Duzib052G0266' => 'dzi', 'Duzib133G0907' => 'dzi', 'Duzib133G1034' => 'dzi', 'Duzib138G0207' => 'dzi', 'Duzib138G0491' => 'dzi', 'Duzib151G0812' => 'dzi', 'Duzib151G1166' => 'dzi', 'Duzib168G0192' => 'dzi', 'Duzib211G0077' => 'dzi', 'Duzib212G0429' => 'dzi', 'Duzib212G0472' => 'dzi', 'ECA233G2617' => 'eca', 'ECA236G4188' => 'eca', 'ECA240G0936' => 'eca', 'ECA240G1129' => 'eca', 'ECA247G0623' => 'eca', 'EL10Ac5g10451' => 'bvu', 'EL10Ac5g10453' => 'bvu', 'EL10Ac5g10894' => 'bvu', 'Eucgr.H00192' => 'egr', 'Eucgr.H00193' => 'egr', 'Eucgr.H00194' => 'egr', 'Eucgr.J01562' => 'egr', 'Eucgr.K03301' => 'egr', 'FAN02G0632' => 'fan', 'FAN05G5378' => 'fan', 'FAN09G3247' => 'fan', 'FAN12G0435' => 'fan', 'FAN12G2426' => 'fan', 'FAN14G1707' => 'fan', 'FAN14G4725' => 'fan', 'FAN15G2071' => 'fan', 'FAN17G3065' => 'fan', 'FAN19G1376' => 'fan', 'FAN20G0354' => 'fan', 'FAN20G2429' => 'fan', 'FAN20G2658' => 'fan', 'FAN24G2343' => 'fan', 'FAN27G2362' => 'fan', 'FAN28G1765' => 'fan', 'FvH4_1g16020' => 'fve', 'FvH4_2g04890' => 'fve', 'FvH4_2g22270' => 'fve', 'FvH4_4g02630' => 'fve', 'FvH4_4g02640' => 'fve', 'FvH4_6g02650' => 'fve', 'Glyma.02G140600' => 'gma', 'Glyma.03G159900' => 'gma', 'Glyma.05G234800' => 'gma', 'Glyma.07G269600' => 'gma', 'Glyma.08G042300' => 'gma', 'Glyma.10G033500' => 'gma', 'Glyma.10G185200' => 'gma', 'Glyma.17G004300' => 'gma', 'Glyma.19G161900' => 'gma', 'Glyma.20G205100' => 'gma', 'Glyma.20G205200' => 'gma', 'Gohir.A01G139101' => 'ghi', 'Gohir.A02G035600' => 'ghi', 'Gohir.A02G117901' => 'ghi', 'Gohir.A07G210100' => 'ghi', 'Gohir.A07G210200' => 'ghi', 'Gohir.A08G061100' => 'ghi', 'Gohir.A09G223000' => 'ghi', 'Gohir.A09G223100' => 'ghi', 'Gohir.A10G113900' => 'ghi', 'Gohir.A10G114000' => 'ghi', 'Gohir.D02G042300' => 'ghi', 'Gohir.D07G216100' => 'ghi', 'Gohir.D07G216200' => 'ghi', 'Gohir.D08G070400' => 'ghi', 'Gohir.D09G225000' => 'ghi', 'Gohir.D09G225100' => 'ghi', 'Gohir.D10G152300' => 'ghi', 'Gohir.D10G153200' => 'ghi', 'Gohir.D11G133701' => 'ghi', 'Gorai.004G074100' => 'gra', 'Gorai.005G046800' => 'gra', 'Gorai.006G246500' => 'gra', 'Gorai.006G246600' => 'gra', 'Gorai.007G142900' => 'gra', 'Gorai.011G171000' => 'gra', 'Gorai.011G171100' => 'gra', 'Gorai.013G104300' => 'gra', 'Gorai.013G104400' => 'gra', 'GSVIVG01000754001' => 'vvi', 'GSVIVG01000756001' => 'vvi', 'GSVIVG01010903001' => 'vvi', 'GSVIVG01017623001' => 'vvi', 'GSVIVG01018113001' => 'vvi', 'GSVIVG01018116001' => 'vvi', 'GSVIVG01018118001' => 'vvi', 'HanXRQChr03g0076211' => 'han', 'HanXRQChr03g0092431' => 'han', 'HanXRQChr03g0092441' => 'han', 'HanXRQChr03g0092591' => 'han', 'HanXRQChr03g0092671' => 'han', 'HanXRQChr03g0092681' => 'han', 'HanXRQChr03g0092691' => 'han', 'HanXRQChr03g0092701' => 'han', 'HanXRQChr03g0092721' => 'han', 'HanXRQChr03g0092731' => 'han', 'HanXRQChr04g0113681' => 'han', 'HanXRQChr10g0281371' => 'han', 'HanXRQChr11g0337141' => 'han', 'HanXRQChr13g0424521' => 'han', 'HanXRQChr13g0424531' => 'han', 'HanXRQChr13g0424541' => 'han', 'HanXRQChr16g0498221' => 'han', 'Haze_04377' => 'cav', 'Haze_11298' => 'cav', 'Haze_24547' => 'cav', 'Haze_24550' => 'cav', 'Haze_26587' => 'cav', 'Hma1.2p1_0650F.1_g195410' => 'hma', 'Hma1.2p1_0893F.1_g233470' => 'hma', 'HPP92_006508' => 'vpl', 'HPP92_024780' => 'vpl', 'Hund02688' => 'sun', 'Hund09380' => 'sun', 'Hund09381' => 'sun', 'Hund09832' => 'sun', 'Hund09833' => 'sun', 'Hund11351' => 'sun', 'Hund11513' => 'sun', 'Lalb_Chr06g0162591' => 'lal', 'Lalb_Chr06g0162601' => 'lal', 'Lalb_Chr06g0169321' => 'lal', 'Lalb_Chr09g0330951' => 'lal', 'Lalb_Chr16g0387631' => 'lal', 'Lalb_Chr21g0306241' => 'lal', 'Lalb_Chr25g0290051' => 'lal', 'Lalb_Chr25g0290061' => 'lal', 'Lalb_Chr25g0290071' => 'lal', 'Lj1g0003876' => 'lja', 'Lj1P1207T36' => 'lonja', 'Lj2C1156G12' => 'lonja', 'Lj3A793G39' => 'lonja', 'Lj3C580G2' => 'lonja', 'Lj3C780G2' => 'lonja', 'Lj3C780T4' => 'lonja', 'Lj3C793G9' => 'lonja', 'Lj4g0012960' => 'lja', 'Lj5g0021252' => 'lja', 'Lj5g0021484' => 'lja', 'Lj5g0024528' => 'lja', 'Lj6A399T12' => 'lonja', 'Lj6A656G65' => 'lonja', 'Lsat_1_v5_gn_3_125500' => 'lsa', 'Lsat_1_v5_gn_3_125540' => 'lsa', 'Lsat_1_v5_gn_5_72701' => 'lsa', 'Lsat_1_v5_gn_8_91560' => 'lsa', 'Lsat_1_v5_gn_9_9640' => 'lsa', 'Manes.01G200600' => 'mes', 'Manes.01G200700' => 'mes', 'Manes.03G168900' => 'mes', 'Manes.03G169000' => 'mes', 'Manes.05G085801' => 'mes', 'Manes.05G086200' => 'mes', 'Manes.15G036700' => 'mes', 'Manes.15G036900' => 'mes', 'Mapoly0004s0172' => 'mpo', 'Mapoly0023s0001' => 'mpo', 'Mapoly0142s0012' => 'mpo', 'MBI01_g32854_MAGBIO' => 'mbi', 'MBI11_g24427_MAGBIO' => 'mbi', 'MBI11_g47319_MAGBIO' => 'mbi', 'MCO01G433' => 'mco', 'MD00G1187800' => 'mdo', 'MD04G1226500' => 'mdo', 'MD05G1203900' => 'mdo', 'MD10G1191100' => 'mdo', 'MD12G1243500' => 'mdo', 'MD13G1207000' => 'mdo', 'MD13G1207100' => 'mdo', 'MD16G1208600' => 'mdo', 'Medtr1g050352' => 'mtr', 'Medtr1g070385' => 'mtr', 'Medtr1g070450' => 'mtr', 'Medtr1g075200' => 'mtr', 'Medtr1g075250' => 'mtr', 'Medtr1g075260' => 'mtr', 'Medtr1g475250' => 'mtr', 'Medtr4g075450' => 'mtr', 'Medtr7g096300' => 'mtr', 'Medtr8g105110' => 'mtr', 'MELO3C006470.2' => 'cme', 'MELO3C006471.2' => 'cme', 'MELO3C020772.2' => 'cme', 'MELO3C026780.2' => 'cme', 'MELO3C026781.2' => 'cme', 'Migut.D00390' => 'egut', 'Migut.G00435' => 'egut', 'Migut.G00436' => 'egut', 'Migut.G00718' => 'egut', 'MSTRG.21891' => 'ama', 'MSTRG.26910' => 'ama', 'MSTRG.4099' => 'ama', 'MSTRG.9925' => 'ama', 'Nitab4.5_0000165g0010' => 'nta', 'Nitab4.5_0000209g0180' => 'nta', 'Nitab4.5_0000244g0440' => 'nta', 'Nitab4.5_0000525g0220' => 'nta', 'Nitab4.5_0001597g0020' => 'nta', 'Nitab4.5_0001878g0040' => 'nta', 'Nitab4.5_0001878g0060' => 'nta', 'Nitab4.5_0002838g0100' => 'nta', 'Nitab4.5_0002838g0120' => 'nta', 'Nitab4.5_0004798g0030' => 'nta', 'Nitab4.5_0005420g0010' => 'nta', 'Nitab4.5_0005507g0010' => 'nta', 'Nitab4.5_0005574g0020' => 'nta', 'Nitab4.5_0005838g0010' => 'nta', 'Nitab4.5_0010580g0020' => 'nta', 'Nn1g02599' => 'nnu', 'Nn1g02608' => 'nnu', 'Nn3g17742' => 'nnu', 'Nn3g19534' => 'nnu', 'Nn3g19535' => 'nnu', 'Oeu008790.1' => 'oeu', 'Oeu008792.1' => 'oeu', 'Oeu032590.1' => 'oeu', 'Oeu035349.1' => 'oeu', 'Oeu049791.1' => 'oeu', 'Os01g0774500' => 'osa', 'Os03g0628800' => 'osa', 'Os03g0798600' => 'osa', 'Os05g0508800' => 'osa', 'Peaxi162Scf00036g02018' => 'pax', 'Peaxi162Scf00578g00032' => 'pax', 'Peaxi162Scf00578g00317' => 'pax', 'Peaxi162Scf00785g00114' => 'pax', 'Peaxi162Scf00813g00119' => 'pax', 'Peaxi162Scf00906g00227' => 'pax', 'PGR004G0875' => 'pgr', 'PGR004G2424' => 'pgr', 'PGR031G1239' => 'pgr', 'PGR031G2474' => 'pgr', 'PGR044G0423' => 'pgr', 'PGSC0003DMG400001128' => 'stu', 'PGSC0003DMG400007336' => 'stu', 'PGSC0003DMG400016318' => 'stu', 'PGSC0003DMG400016319' => 'stu', 'PGSC0003DMG400018074' => 'stu', 'Phvul.001G157700' => 'pvu', 'Phvul.002G148550' => 'pvu', 'Phvul.002G320200' => 'pvu', 'Phvul.003G089200' => 'pvu', 'Phvul.007G126000' => 'pvu', 'Phvul.007G126100' => 'pvu', 'Phvul.007G178000' => 'pvu', 'Phvul.007G178200' => 'pvu', 'Potri.002G043000' => 'ptr', 'Potri.002G043200' => 'ptr', 'Potri.003G123750' => 'ptr', 'Potri.005G055401' => 'ptr', 'Potri.005G219700' => 'ptr', 'Potri.005G220000' => 'ptr', 'Potri.008G161901' => 'ptr', 'Potri.008G162000' => 'ptr', 'Potri.008G162400' => 'ptr', 'Potri.010G076900' => 'ptr', 'Pp3c12_9180' => 'ppa', 'Pp3c13_19770' => 'ppa', 'Pp3c14_22950' => 'ppa', 'Pp3c16_12160' => 'ppa', 'Pp3c27_7820' => 'ppa', 'Pp3c2_3490' => 'ppa', 'Pp3c3_23700' => 'ppa', 'Pp3c3_36520' => 'ppa', 'Pp3c4_15250' => 'ppa', 'PRCOL_00007002' => 'pco', 'Prupe.1G030600' => 'ppe', 'Prupe.1G030700' => 'ppe', 'Prupe.6G345200' => 'ppe', 'Prupe.8G230300' => 'ppe', 'Prupe.8G230500' => 'ppe', 'Psat3g059600' => 'psa', 'Psat5g200920' => 'psa', 'Psat6g056440' => 'psa', 'Psat6g057360' => 'psa', 'Psat6g134120' => 'psa', 'Psat6g134160' => 'psa', 'Psat7g008640' => 'psa', 'Psat7g185240' => 'psa', 'PSO017G1330' => 'pso', 'PSO063G6097' => 'pso', 'PSO170G0835' => 'pso', 'PSO170G2499' => 'pso', 'PSO210G5058' => 'pso', 'PSO210G6154' => 'pso', 'PSO585G0031' => 'pso', 'PSO832G0264' => 'pso', 'PSO832G4288' => 'pso', 'QL03p027355' => 'qlo', 'QL03p027430' => 'qlo', 'QL04p081380' => 'qlo', 'QL06p015642' => 'qlo', 'QL06p015650' => 'qlo', 'QL06p015686' => 'qlo', 'QL12p042927' => 'qlo', 'QL93p1863_0035' => 'qlo', 'RcHm_v2.0_Chr3g0450581' => 'rch', 'RcHm_v2.0_Chr4g0390371' => 'rch', 'RcHm_v2.0_Chr4g0390381' => 'rch', 'RcHm_v2.0_Chr4g0390491' => 'rch', 'RcHm_v2.0_Chr4g0390501' => 'rch', 'RcHm_v2.0_Chr6g0289231' => 'rch', 'Rhsim04G0190400' => 'rsi', 'Rhsim04G0190500' => 'rsi', 'Rhsim04G0190600' => 'rsi', 'Rhsim13G0031400' => 'rsi', 'Rhsim13G0165600' => 'rsi', 'RhsimUnG0114600' => 'rsi', 'RhsimUnG0114700' => 'rsi', 'Sabra02G0034800' => 'sbr', 'Sabra02G0035100' => 'sbr', 'Sabra05G0168600' => 'sbr', 'Sabra05G0168800' => 'sbr', 'Sabra08G0123700' => 'sbr', 'Sabra10G0031900' => 'sbr', 'Sabra13G0039000' => 'sbr', 'SalBow2G0782' => 'sbo', 'SalBow2G1403' => 'sbo', 'SalBow4G0074' => 'sbo', 'SalBow4G2635' => 'sbo', 'SalBow5G3010' => 'sbo', 'Sc05g0000870' => 'sci', 'Sc05g0000890' => 'sci', 'Sc13g0005000' => 'sci', 'Sc13g0005030' => 'sci', 'Sc19g0003790' => 'sci', 'Sc19g0003800' => 'sci', 'Sed0003467' => 'sed', 'Sed0009355' => 'sed', 'Sed0009894' => 'sed', 'Sed0011972' => 'sed', 'Sed0021483' => 'sed', 'Sed0021750' => 'sed', 'Sed0026279' => 'sed', 'SEGI_05312' => 'sgi', 'SEGI_10112' => 'sgi', 'SEGI_15835' => 'sgi', 'SEGI_30386' => 'sgi', 'SEGI_34122' => 'sgi', 'SEGI_35063' => 'sgi', 'SGA_v2.0_scaffold101G29794' => 'sas', 'SGA_v2.0_scaffold1G00573' => 'sas', 'SGA_v2.0_scaffold79G25637' => 'sas', 'SGA_v2.0_scaffold88G27283' => 'sas', 'SGA_v2.0_scaffold88G27285' => 'sas', 'SGA_v2.0_scaffold88G27331' => 'sas', 'SHI09937' => 'shi', 'SMO119G0302' => 'smo', 'SMO137G0231' => 'smo', 'SMO367G1151' => 'smo', 'Solyc02g082000.3' => 'sly', 'Solyc06g031670.3' => 'sly', 'Solyc06g053810.3' => 'sly', 'Solyc07g025457.1' => 'sly', 'Solyc08g059740.1' => 'sly', 'Solyc08g059750.3' => 'sly', 'Solyc09g083370.3' => 'sly', 'Solyc12g038950.3' => 'sly', 'Sopen02g026630' => 'spe', 'Sopen06g018930' => 'spe', 'Sopen06g018940' => 'spe', 'Sopen08g009460' => 'spe', 'Sopen09g032290' => 'spe', 'Sp1g03080' => 'spa', 'Sp1g03090' => 'spa', 'Sp1g05480' => 'spa', 'Sp2g07860' => 'spa', 'Sp2g08430' => 'spa', 'Sp2g08440' => 'spa', 'Sp2g26200' => 'spa', 'Sp4g13170' => 'spa', 'Sp6g33840' => 'spa', 'SpUn1204_0010' => 'spa', 'TAR365G0908' => 'tar', 'TAR381G1270' => 'tar', 'TAR381G1651' => 'tar', 'TAR625G1131' => 'tar', 'TAR633G0962' => 'tar', 'TAR633G1729' => 'tar', 'TAR633G1864' => 'tar', 'TAR636G0221' => 'tar', 'TAR636G0314' => 'tar', 'TAR636G3202' => 'tar', 'THA.LOC104800805' => 'tha', 'THA.LOC104801096' => 'tha', 'THA.LOC104801555' => 'tha', 'THA.LOC104808491' => 'tha', 'THA.LOC104808595' => 'tha', 'THA.LOC104815985' => 'tha', 'THA.LOC104822250' => 'tha', 'THA.LOC104826071' => 'tha', 'Thecc.01G265200' => 'tca', 'Thecc.01G265300' => 'tca', 'Thecc.01G265700' => 'tca', 'Thecc.03G109100' => 'tca', 'Thecc.04G245900' => 'tca', 'Thecc.04G246000' => 'tca', 'Thhalv10003334m.g' => 'esa', 'Thhalv10005508m.g' => 'esa', 'Thhalv10005643m.g' => 'esa', 'Thhalv10007316m.g' => 'esa', 'Thhalv10009006m.g' => 'esa', 'Thhalv10009309m.g' => 'esa', 'Thhalv10014917m.g' => 'esa', 'Thhalv10014919m.g' => 'esa', 'Thhalv10015393m.g' => 'esa', 'Thhalv10016515m.g' => 'esa', 'Thhalv10029242m.g' => 'esa', 'TPR.G16654' => 'tpr', 'TPR.G20589' => 'tpr', 'TPR.G23029' => 'tpr', 'TPR.G27731' => 'tpr', 'TPR.G28889' => 'tpr', 'TPR.G28899' => 'tpr', 'TPR.G30846' => 'tpr', 'TPR.G5452' => 'tpr', 'TPR.G5713' => 'tpr', 'TPR.G9046' => 'tpr', 'TPR.G9061' => 'tpr', 'TWI09G1075' => 'twi', 'TWI12G0806' => 'twi', 'TWI18G0108' => 'twi', 'TWI53G1361' => 'twi', 'TWI73G0185' => 'twi', 'TWI73G0427' => 'twi', 'unitig_37.g12001' => 'ugi', 'unitig_747.g21660' => 'ugi', 'unitig_748.g7232' => 'ugi', 'unitig_748.g7315' => 'ugi', 'unitig_85.g27262' => 'ugi', 'unitig_92.g28220' => 'ugi', 'vmacro02632' => 'vma', 'vmacro08410' => 'vma', 'vmacro08411' => 'vma', 'vmacro15407' => 'vma', 'VMungo0251G3619' => 'vmu', 'VMungo0720G1204' => 'vmu', 'VMungo0720G1918' => 'vmu', 'VMungo0720G2387' => 'vmu', 'VMungo0720G2961' => 'vmu', 'VMungo1215G2154' => 'vmu', 'VMungo1383G2411' => 'vmu', 'Zm00001eb051130' => 'zma', 'Zm00001eb116830' => 'zma', 'Zm00001eb116850' => 'zma', 'Zm00001eb151740' => 'zma', 'Zm00001eb292360' => 'zma', 'Zm00001eb301640' => 'zma' ) $gf_id = 'HOM05D000856' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000856' ) $data_identifier = 'HOM05D000856' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 13, 'ath' => (int) 10, 'atr' => (int) 1, 'acertr' => (int) 8, 'cqu' => (int) 6, 'bca' => (int) 21, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 11, 'car' => (int) 9, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 8, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 5, 'fan' => (int) 16, 'fve' => (int) 6, 'gma' => (int) 11, 'ghi' => (int) 19, 'gra' => (int) 9, 'vvi' => (int) 7, 'han' => (int) 17, 'cav' => (int) 5, 'hma' => (int) 2, 'vpl' => (int) 2, 'sun' => (int) 7, 'lal' => (int) 9, 'lja' => (int) 5, 'lonja' => (int) 9, 'lsa' => (int) 5, 'mes' => (int) 8, 'mpo' => (int) 3, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 10, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 15, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 9, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 9, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 6, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 5, 'spa' => (int) 10, 'tar' => (int) 10, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 11, 'tpr' => (int) 11, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 4, 'vmu' => (int) 7, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb301640' $species_info = array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ) $local_species = 'fan' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000856', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p00010' => 'bna', 'A03p04160' => 'bna', 'A03p17160' => 'bna', 'A04p23370' => 'bna', 'A05p14860' => 'bna', 'A08p37020' => 'bna', 'A09p08050' => 'bna', 'A09p66800' => 'bna', 'A09p67940' => 'bna', 'A10p02680' => 'bna', 'A10p05320' => 'bna', 'Aa31LG1G20560' => 'aar', 'Aa31LG1G20610' => 'aar', 'Aa31LG1G7810' => 'aar', 'Aa31LG5G3590' => 'aar', 'Aa31LG5G6140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3819' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4683' => 'aag', 'Actinidia04480' => 'ach', 'Actinidia05466' => 'ach', 'Actinidia08445' => 'ach', 'Actinidia21170' => 'ach', 'Actinidia24812' => 'ach', 'Actinidia24951' => 'ach', 'Actinidia40088' => 'ach', 'Ah.02g111660' => 'amhyb', 'Ah.11g048900' => 'amhyb', 'Ah.11g049910' => 'amhyb', 'AL1G13870' => 'aly', 'AL1G13880' => 'aly', 'AL1G16760' => 'aly', 'AL390U10020' => 'aly', 'AL4G25520' => 'aly', 'AL6G19890' => 'aly', 'AL6G19900' => 'aly', 'AL6G19910' => 'aly', 'AL8G40100' => 'aly', 'Aqoxy2G03562' => 'aox', 'Aqoxy5G00316' => 'aox', 'Aqoxy5G00926' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1628KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1H403S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2FU6SJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.882I6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8YRY2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YN1SN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AF70II' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZA8L1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F916KL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHRD8H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KTZ8QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S22EMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8M29T' => 'arhy', 'AT1G04270' => 'ath', 'AT1G04280' => 'ath', 'AT1G06750' => 'ath', 'AT1G33850' => 'ath', 'AT2G30630' => 'ath', 'AT5G09490' => 'ath', 'AT5G09500' => 'ath', 'AT5G09510' => 'ath', 'AT5G43640' => 'ath', 'AT5G63070' => 'ath', 'ATR0605G315' => 'atr', 'Atru.chr11.175' => 'acertr', 'Atru.chr11.653' => 'acertr', 'Atru.chr3.1616' => 'acertr', 'Atru.chr4.2230' => 'acertr', 'Atru.chr4.2232' => 'acertr', 'Atru.chr5.1598' => 'acertr', 'Atru.chr5.1600' => 'acertr', 'Atru.chr5.2188' => 'acertr', 'AUR62008326' => 'cqu', 'AUR62011922' => 'cqu', 'AUR62011924' => 'cqu', 'AUR62021771' => 'cqu', 'AUR62032237' => 'cqu', 'AUR62032240' => 'cqu', 'BcaB01g05572' => 'bca', 'BcaB02g10337' => 'bca', 'BcaB04g19944' => 'bca', 'BcaB05g21548' => 'bca', 'BcaB05g21549' => 'bca', 'BcaB05g23227' => 'bca', 'BcaB06g26256' => 'bca', 'BcaB06g26257' => 'bca', 'BcaB06g28379' => 'bca', 'BcaC02g11159' => 'bca', 'BcaC03g13258' => 'bca', 'BcaC03g13259' => 'bca', 'BcaC05g24456' => 'bca', 'BcaC05g24457' => 'bca', 'BcaC07g36922' => 'bca', 'BcaC07g36923' => 'bca', 'BcaC07g42050' => 'bca', 'BcaC07g42176' => 'bca', 'BcaC07g42195' => 'bca', 'BcaC07g42196' => 'bca', 'BcaNung06674' => 'bca', 'BolC2t06351H' => 'bol', 'BolC2t06352H' => 'bol', 'BolC3t12993H' => 'bol', 'BolC4t23525H' => 'bol', 'BolC4t27475H' => 'bol', 'BolC5t29025H' => 'bol', 'BolC5t29026H' => 'bol', 'BolC8t46898H' => 'bol', 'BolC8t46899H' => 'bol', 'BolC8t52630H' => 'bol', 'BolC8t52765H' => 'bol', 'BolC9t53824H' => 'bol', 'BraA03t09760Z' => 'bra', 'BraA03t10990Z' => 'bra', 'BraA05t20413Z' => 'bra', 'BraA08t35602Z' => 'bra', 'BraA09t36458Z' => 'bra', 'BraA09t42018Z' => 'bra', 'BraA09t42129Z' => 'bra', 'BraA10t42536Z' => 'bra', 'BraA10t42537Z' => 'bra', 'C01p10690' => 'bna', 'C02p03890' => 'bna', 'C02p03900' => 'bna', 'C03p04620' => 'bna', 'C04p19870' => 'bna', 'C04p59670' => 'bna', 'C05p02460' => 'bna', 'C05p02470' => 'bna', 'C08p00980' => 'bna', 'C08p00990' => 'bna', 'C08p51030' => 'bna', 'C08p52360' => 'bna', 'C09p09120' => 'bna', 'CAN.G19.15' => 'can', 'CAN.G251.10' => 'can', 'CAN.G251.9' => 'can', 'CAN.G398.24' => 'can', 'CAN.G410.32' => 'can', 'CAN.G881.2' => 'can', 'CANSAT01G3025' => 'cansat', 'CANSAT78G1211' => 'cansat', 'CANSAT78G1218' => 'cansat', 'CANSAT78G1521' => 'cansat', 'CANSAT78G1670' => 'cansat', 'CARHR003600' => 'chi', 'CARHR003610' => 'chi', 'CARHR006290' => 'chi', 'CARHR006430' => 'chi', 'CARHR124110' => 'chi', 'CARHR203870' => 'chi', 'CARHR203880' => 'chi', 'CARHR203890' => 'chi', 'CARHR276880' => 'chi', 'Carub.0001s0346' => 'cru', 'Carub.0001s0347' => 'cru', 'Carub.0001s0607' => 'cru', 'Carub.0003s2768' => 'cru', 'Carub.0003s2769' => 'cru', 'Carub.0004s1178' => 'cru', 'Carub.0006s0806' => 'cru', 'Carub.0006s0807' => 'cru', 'Carub.0006s0808' => 'cru', 'Carub.0008s0501' => 'cru', 'Carub.0008s2379' => 'cru', 'Ca_08655_v3' => 'car', 'Ca_08922_v3' => 'car', 'Ca_08923_v3' => 'car', 'Ca_09119_v3' => 'car', 'Ca_09703_v3' => 'car', 'Ca_09705_v3' => 'car', 'Ca_09835_v3' => 'car', 'Ca_26403_v3' => 'car', 'Ca_30719_v3' => 'car', 'CBR_g17958' => 'cbr', 'CBR_g40516' => 'cbr', 'Cc00_g05350' => 'ccan', 'Cc01_g18690' => 'ccan', 'Cc03_g04830' => 'ccan', 'Cc03_g04850' => 'ccan', 'CDE02G4469' => 'cde', 'CDE06G0883' => 'cde', 'CDE06G1295' => 'cde', 'CDE06G1390' => 'cde', 'CDE07G0584' => 'cde', 'CDE07G1084' => 'cde', 'CDE08G1259' => 'cde', 'Cfa002341' => 'cfa', 'Cfa024337' => 'cfa', 'Ciclev10004749m.g' => 'ccl', 'Ciclev10006127m.g' => 'ccl', 'Ciclev10019720m.g' => 'ccl', 'Ciclev10022652m.g' => 'ccl', 'CiPaw.01G190400' => 'cil', 'CiPaw.01G190500' => 'cil', 'CiPaw.02G116400' => 'cil', 'CiPaw.02G116500' => 'cil', 'CiPaw.04G183000' => 'cil', 'CiPaw.04G183300' => 'cil', 'ClCG05G004610' => 'cla', 'ClCG05G004620' => 'cla', 'ClCG06G006730' => 'cla', 'ClCG06G006740' => 'cla', 'ClCG11G003690' => 'cla', 'COL.COLO4_08276' => 'col', 'COL.COLO4_08277' => 'col', 'COL.COLO4_15787' => 'col', 'COL.COLO4_15789' => 'col', 'Cpa.g.c44815' => 'cpa', 'Cpa.g.sc52.144' => 'cpa', 'Cpa.g.sc58.46' => 'cpa', 'Cpa.g.sc58.47' => 'cpa', 'Cre08.g360900' => 'cre', 'CsaV3_2G013030' => 'csa', 'CsaV3_2G013050' => 'csa', 'CsaV3_2G015620' => 'csa', 'CsaV3_3G012590' => 'csa', 'CsaV3_3G012600' => 'csa', 'CSS0001641' => 'camsi', 'CSS0008310' => 'camsi', 'CSS0013011' => 'camsi', 'CSS0017147' => 'camsi', 'CSS0022970' => 'camsi', 'CSS0025655' => 'camsi', 'CSS0028665' => 'camsi', 'CSS0029117' => 'camsi', 'CSS0032024' => 'camsi', 'CSS0039681' => 'camsi', 'CSS0046516' => 'camsi', 'CSS0050307' => 'camsi', 'DCAR_005871' => 'dca', 'DCAR_007342' => 'dca', 'DCAR_024228' => 'dca', 'DCAR_027277' => 'dca', 'DCAR_030718' => 'dca', 'Dinv20287' => 'din', 'Dinv22461' => 'din', 'Dinv22464' => 'din', 'Dinv29912' => 'din', 'Dinv29913' => 'din', 'Dinv34580' => 'din', 'Dinv34582' => 'din', 'Dinv44632' => 'din', 'Duzib052G0266' => 'dzi', 'Duzib133G0907' => 'dzi', 'Duzib133G1034' => 'dzi', 'Duzib138G0207' => 'dzi', 'Duzib138G0491' => 'dzi', 'Duzib151G0812' => 'dzi', 'Duzib151G1166' => 'dzi', 'Duzib168G0192' => 'dzi', 'Duzib211G0077' => 'dzi', 'Duzib212G0429' => 'dzi', 'Duzib212G0472' => 'dzi', 'ECA233G2617' => 'eca', 'ECA236G4188' => 'eca', 'ECA240G0936' => 'eca', 'ECA240G1129' => 'eca', 'ECA247G0623' => 'eca', 'EL10Ac5g10451' => 'bvu', 'EL10Ac5g10453' => 'bvu', 'EL10Ac5g10894' => 'bvu', 'Eucgr.H00192' => 'egr', 'Eucgr.H00193' => 'egr', 'Eucgr.H00194' => 'egr', 'Eucgr.J01562' => 'egr', 'Eucgr.K03301' => 'egr', 'FAN02G0632' => 'fan', 'FAN05G5378' => 'fan', 'FAN09G3247' => 'fan', 'FAN12G0435' => 'fan', 'FAN12G2426' => 'fan', 'FAN14G1707' => 'fan', 'FAN14G4725' => 'fan', 'FAN15G2071' => 'fan', 'FAN17G3065' => 'fan', 'FAN19G1376' => 'fan', 'FAN20G0354' => 'fan', 'FAN20G2429' => 'fan', 'FAN20G2658' => 'fan', 'FAN24G2343' => 'fan', 'FAN27G2362' => 'fan', 'FAN28G1765' => 'fan', 'FvH4_1g16020' => 'fve', 'FvH4_2g04890' => 'fve', 'FvH4_2g22270' => 'fve', 'FvH4_4g02630' => 'fve', 'FvH4_4g02640' => 'fve', 'FvH4_6g02650' => 'fve', 'Glyma.02G140600' => 'gma', 'Glyma.03G159900' => 'gma', 'Glyma.05G234800' => 'gma', 'Glyma.07G269600' => 'gma', 'Glyma.08G042300' => 'gma', 'Glyma.10G033500' => 'gma', 'Glyma.10G185200' => 'gma', 'Glyma.17G004300' => 'gma', 'Glyma.19G161900' => 'gma', 'Glyma.20G205100' => 'gma', 'Glyma.20G205200' => 'gma', 'Gohir.A01G139101' => 'ghi', 'Gohir.A02G035600' => 'ghi', 'Gohir.A02G117901' => 'ghi', 'Gohir.A07G210100' => 'ghi', 'Gohir.A07G210200' => 'ghi', 'Gohir.A08G061100' => 'ghi', 'Gohir.A09G223000' => 'ghi', 'Gohir.A09G223100' => 'ghi', 'Gohir.A10G113900' => 'ghi', 'Gohir.A10G114000' => 'ghi', 'Gohir.D02G042300' => 'ghi', 'Gohir.D07G216100' => 'ghi', 'Gohir.D07G216200' => 'ghi', 'Gohir.D08G070400' => 'ghi', 'Gohir.D09G225000' => 'ghi', 'Gohir.D09G225100' => 'ghi', 'Gohir.D10G152300' => 'ghi', 'Gohir.D10G153200' => 'ghi', 'Gohir.D11G133701' => 'ghi', 'Gorai.004G074100' => 'gra', 'Gorai.005G046800' => 'gra', 'Gorai.006G246500' => 'gra', 'Gorai.006G246600' => 'gra', 'Gorai.007G142900' => 'gra', 'Gorai.011G171000' => 'gra', 'Gorai.011G171100' => 'gra', 'Gorai.013G104300' => 'gra', 'Gorai.013G104400' => 'gra', 'GSVIVG01000754001' => 'vvi', 'GSVIVG01000756001' => 'vvi', 'GSVIVG01010903001' => 'vvi', 'GSVIVG01017623001' => 'vvi', 'GSVIVG01018113001' => 'vvi', 'GSVIVG01018116001' => 'vvi', 'GSVIVG01018118001' => 'vvi', 'HanXRQChr03g0076211' => 'han', 'HanXRQChr03g0092431' => 'han', 'HanXRQChr03g0092441' => 'han', 'HanXRQChr03g0092591' => 'han', 'HanXRQChr03g0092671' => 'han', 'HanXRQChr03g0092681' => 'han', 'HanXRQChr03g0092691' => 'han', 'HanXRQChr03g0092701' => 'han', 'HanXRQChr03g0092721' => 'han', 'HanXRQChr03g0092731' => 'han', 'HanXRQChr04g0113681' => 'han', 'HanXRQChr10g0281371' => 'han', 'HanXRQChr11g0337141' => 'han', 'HanXRQChr13g0424521' => 'han', 'HanXRQChr13g0424531' => 'han', 'HanXRQChr13g0424541' => 'han', 'HanXRQChr16g0498221' => 'han', 'Haze_04377' => 'cav', 'Haze_11298' => 'cav', 'Haze_24547' => 'cav', 'Haze_24550' => 'cav', 'Haze_26587' => 'cav', 'Hma1.2p1_0650F.1_g195410' => 'hma', 'Hma1.2p1_0893F.1_g233470' => 'hma', 'HPP92_006508' => 'vpl', 'HPP92_024780' => 'vpl', 'Hund02688' => 'sun', 'Hund09380' => 'sun', 'Hund09381' => 'sun', 'Hund09832' => 'sun', 'Hund09833' => 'sun', 'Hund11351' => 'sun', 'Hund11513' => 'sun', 'Lalb_Chr06g0162591' => 'lal', 'Lalb_Chr06g0162601' => 'lal', 'Lalb_Chr06g0169321' => 'lal', 'Lalb_Chr09g0330951' => 'lal', 'Lalb_Chr16g0387631' => 'lal', 'Lalb_Chr21g0306241' => 'lal', 'Lalb_Chr25g0290051' => 'lal', 'Lalb_Chr25g0290061' => 'lal', 'Lalb_Chr25g0290071' => 'lal', 'Lj1g0003876' => 'lja', 'Lj1P1207T36' => 'lonja', 'Lj2C1156G12' => 'lonja', 'Lj3A793G39' => 'lonja', 'Lj3C580G2' => 'lonja', 'Lj3C780G2' => 'lonja', 'Lj3C780T4' => 'lonja', 'Lj3C793G9' => 'lonja', 'Lj4g0012960' => 'lja', 'Lj5g0021252' => 'lja', 'Lj5g0021484' => 'lja', 'Lj5g0024528' => 'lja', 'Lj6A399T12' => 'lonja', 'Lj6A656G65' => 'lonja', 'Lsat_1_v5_gn_3_125500' => 'lsa', 'Lsat_1_v5_gn_3_125540' => 'lsa', 'Lsat_1_v5_gn_5_72701' => 'lsa', 'Lsat_1_v5_gn_8_91560' => 'lsa', 'Lsat_1_v5_gn_9_9640' => 'lsa', 'Manes.01G200600' => 'mes', 'Manes.01G200700' => 'mes', 'Manes.03G168900' => 'mes', 'Manes.03G169000' => 'mes', 'Manes.05G085801' => 'mes', 'Manes.05G086200' => 'mes', 'Manes.15G036700' => 'mes', 'Manes.15G036900' => 'mes', 'Mapoly0004s0172' => 'mpo', 'Mapoly0023s0001' => 'mpo', 'Mapoly0142s0012' => 'mpo', 'MBI01_g32854_MAGBIO' => 'mbi', 'MBI11_g24427_MAGBIO' => 'mbi', 'MBI11_g47319_MAGBIO' => 'mbi', 'MCO01G433' => 'mco', 'MD00G1187800' => 'mdo', 'MD04G1226500' => 'mdo', 'MD05G1203900' => 'mdo', 'MD10G1191100' => 'mdo', 'MD12G1243500' => 'mdo', 'MD13G1207000' => 'mdo', 'MD13G1207100' => 'mdo', 'MD16G1208600' => 'mdo', 'Medtr1g050352' => 'mtr', 'Medtr1g070385' => 'mtr', 'Medtr1g070450' => 'mtr', 'Medtr1g075200' => 'mtr', 'Medtr1g075250' => 'mtr', 'Medtr1g075260' => 'mtr', 'Medtr1g475250' => 'mtr', 'Medtr4g075450' => 'mtr', 'Medtr7g096300' => 'mtr', 'Medtr8g105110' => 'mtr', 'MELO3C006470.2' => 'cme', 'MELO3C006471.2' => 'cme', 'MELO3C020772.2' => 'cme', 'MELO3C026780.2' => 'cme', 'MELO3C026781.2' => 'cme', 'Migut.D00390' => 'egut', 'Migut.G00435' => 'egut', 'Migut.G00436' => 'egut', 'Migut.G00718' => 'egut', 'MSTRG.21891' => 'ama', 'MSTRG.26910' => 'ama', 'MSTRG.4099' => 'ama', 'MSTRG.9925' => 'ama', 'Nitab4.5_0000165g0010' => 'nta', 'Nitab4.5_0000209g0180' => 'nta', 'Nitab4.5_0000244g0440' => 'nta', 'Nitab4.5_0000525g0220' => 'nta', 'Nitab4.5_0001597g0020' => 'nta', 'Nitab4.5_0001878g0040' => 'nta', 'Nitab4.5_0001878g0060' => 'nta', 'Nitab4.5_0002838g0100' => 'nta', 'Nitab4.5_0002838g0120' => 'nta', 'Nitab4.5_0004798g0030' => 'nta', 'Nitab4.5_0005420g0010' => 'nta', 'Nitab4.5_0005507g0010' => 'nta', 'Nitab4.5_0005574g0020' => 'nta', 'Nitab4.5_0005838g0010' => 'nta', 'Nitab4.5_0010580g0020' => 'nta', 'Nn1g02599' => 'nnu', 'Nn1g02608' => 'nnu', 'Nn3g17742' => 'nnu', 'Nn3g19534' => 'nnu', 'Nn3g19535' => 'nnu', 'Oeu008790.1' => 'oeu', 'Oeu008792.1' => 'oeu', 'Oeu032590.1' => 'oeu', 'Oeu035349.1' => 'oeu', 'Oeu049791.1' => 'oeu', 'Os01g0774500' => 'osa', 'Os03g0628800' => 'osa', 'Os03g0798600' => 'osa', 'Os05g0508800' => 'osa', 'Peaxi162Scf00036g02018' => 'pax', 'Peaxi162Scf00578g00032' => 'pax', 'Peaxi162Scf00578g00317' => 'pax', 'Peaxi162Scf00785g00114' => 'pax', 'Peaxi162Scf00813g00119' => 'pax', 'Peaxi162Scf00906g00227' => 'pax', 'PGR004G0875' => 'pgr', 'PGR004G2424' => 'pgr', 'PGR031G1239' => 'pgr', 'PGR031G2474' => 'pgr', 'PGR044G0423' => 'pgr', 'PGSC0003DMG400001128' => 'stu', 'PGSC0003DMG400007336' => 'stu', 'PGSC0003DMG400016318' => 'stu', 'PGSC0003DMG400016319' => 'stu', 'PGSC0003DMG400018074' => 'stu', 'Phvul.001G157700' => 'pvu', 'Phvul.002G148550' => 'pvu', 'Phvul.002G320200' => 'pvu', 'Phvul.003G089200' => 'pvu', 'Phvul.007G126000' => 'pvu', 'Phvul.007G126100' => 'pvu', 'Phvul.007G178000' => 'pvu', 'Phvul.007G178200' => 'pvu', 'Potri.002G043000' => 'ptr', 'Potri.002G043200' => 'ptr', 'Potri.003G123750' => 'ptr', 'Potri.005G055401' => 'ptr', 'Potri.005G219700' => 'ptr', 'Potri.005G220000' => 'ptr', 'Potri.008G161901' => 'ptr', 'Potri.008G162000' => 'ptr', 'Potri.008G162400' => 'ptr', 'Potri.010G076900' => 'ptr', 'Pp3c12_9180' => 'ppa', 'Pp3c13_19770' => 'ppa', 'Pp3c14_22950' => 'ppa', 'Pp3c16_12160' => 'ppa', 'Pp3c27_7820' => 'ppa', 'Pp3c2_3490' => 'ppa', 'Pp3c3_23700' => 'ppa', 'Pp3c3_36520' => 'ppa', 'Pp3c4_15250' => 'ppa', 'PRCOL_00007002' => 'pco', 'Prupe.1G030600' => 'ppe', 'Prupe.1G030700' => 'ppe', 'Prupe.6G345200' => 'ppe', 'Prupe.8G230300' => 'ppe', 'Prupe.8G230500' => 'ppe', 'Psat3g059600' => 'psa', 'Psat5g200920' => 'psa', 'Psat6g056440' => 'psa', 'Psat6g057360' => 'psa', 'Psat6g134120' => 'psa', 'Psat6g134160' => 'psa', 'Psat7g008640' => 'psa', 'Psat7g185240' => 'psa', 'PSO017G1330' => 'pso', 'PSO063G6097' => 'pso', 'PSO170G0835' => 'pso', 'PSO170G2499' => 'pso', 'PSO210G5058' => 'pso', 'PSO210G6154' => 'pso', 'PSO585G0031' => 'pso', 'PSO832G0264' => 'pso', 'PSO832G4288' => 'pso', 'QL03p027355' => 'qlo', 'QL03p027430' => 'qlo', 'QL04p081380' => 'qlo', 'QL06p015642' => 'qlo', 'QL06p015650' => 'qlo', 'QL06p015686' => 'qlo', 'QL12p042927' => 'qlo', 'QL93p1863_0035' => 'qlo', 'RcHm_v2.0_Chr3g0450581' => 'rch', 'RcHm_v2.0_Chr4g0390371' => 'rch', 'RcHm_v2.0_Chr4g0390381' => 'rch', 'RcHm_v2.0_Chr4g0390491' => 'rch', 'RcHm_v2.0_Chr4g0390501' => 'rch', 'RcHm_v2.0_Chr6g0289231' => 'rch', 'Rhsim04G0190400' => 'rsi', 'Rhsim04G0190500' => 'rsi', 'Rhsim04G0190600' => 'rsi', 'Rhsim13G0031400' => 'rsi', 'Rhsim13G0165600' => 'rsi', 'RhsimUnG0114600' => 'rsi', 'RhsimUnG0114700' => 'rsi', 'Sabra02G0034800' => 'sbr', 'Sabra02G0035100' => 'sbr', 'Sabra05G0168600' => 'sbr', 'Sabra05G0168800' => 'sbr', 'Sabra08G0123700' => 'sbr', 'Sabra10G0031900' => 'sbr', 'Sabra13G0039000' => 'sbr', 'SalBow2G0782' => 'sbo', 'SalBow2G1403' => 'sbo', 'SalBow4G0074' => 'sbo', 'SalBow4G2635' => 'sbo', 'SalBow5G3010' => 'sbo', 'Sc05g0000870' => 'sci', 'Sc05g0000890' => 'sci', 'Sc13g0005000' => 'sci', 'Sc13g0005030' => 'sci', 'Sc19g0003790' => 'sci', 'Sc19g0003800' => 'sci', 'Sed0003467' => 'sed', 'Sed0009355' => 'sed', 'Sed0009894' => 'sed', 'Sed0011972' => 'sed', 'Sed0021483' => 'sed', 'Sed0021750' => 'sed', 'Sed0026279' => 'sed', 'SEGI_05312' => 'sgi', 'SEGI_10112' => 'sgi', 'SEGI_15835' => 'sgi', 'SEGI_30386' => 'sgi', 'SEGI_34122' => 'sgi', 'SEGI_35063' => 'sgi', 'SGA_v2.0_scaffold101G29794' => 'sas', 'SGA_v2.0_scaffold1G00573' => 'sas', 'SGA_v2.0_scaffold79G25637' => 'sas', 'SGA_v2.0_scaffold88G27283' => 'sas', 'SGA_v2.0_scaffold88G27285' => 'sas', 'SGA_v2.0_scaffold88G27331' => 'sas', 'SHI09937' => 'shi', 'SMO119G0302' => 'smo', 'SMO137G0231' => 'smo', 'SMO367G1151' => 'smo', 'Solyc02g082000.3' => 'sly', 'Solyc06g031670.3' => 'sly', 'Solyc06g053810.3' => 'sly', 'Solyc07g025457.1' => 'sly', 'Solyc08g059740.1' => 'sly', 'Solyc08g059750.3' => 'sly', 'Solyc09g083370.3' => 'sly', 'Solyc12g038950.3' => 'sly', 'Sopen02g026630' => 'spe', 'Sopen06g018930' => 'spe', 'Sopen06g018940' => 'spe', 'Sopen08g009460' => 'spe', 'Sopen09g032290' => 'spe', 'Sp1g03080' => 'spa', 'Sp1g03090' => 'spa', 'Sp1g05480' => 'spa', 'Sp2g07860' => 'spa', 'Sp2g08430' => 'spa', 'Sp2g08440' => 'spa', 'Sp2g26200' => 'spa', 'Sp4g13170' => 'spa', 'Sp6g33840' => 'spa', 'SpUn1204_0010' => 'spa', 'TAR365G0908' => 'tar', 'TAR381G1270' => 'tar', 'TAR381G1651' => 'tar', 'TAR625G1131' => 'tar', 'TAR633G0962' => 'tar', 'TAR633G1729' => 'tar', 'TAR633G1864' => 'tar', 'TAR636G0221' => 'tar', 'TAR636G0314' => 'tar', 'TAR636G3202' => 'tar', 'THA.LOC104800805' => 'tha', 'THA.LOC104801096' => 'tha', 'THA.LOC104801555' => 'tha', 'THA.LOC104808491' => 'tha', 'THA.LOC104808595' => 'tha', 'THA.LOC104815985' => 'tha', 'THA.LOC104822250' => 'tha', 'THA.LOC104826071' => 'tha', 'Thecc.01G265200' => 'tca', 'Thecc.01G265300' => 'tca', 'Thecc.01G265700' => 'tca', 'Thecc.03G109100' => 'tca', 'Thecc.04G245900' => 'tca', 'Thecc.04G246000' => 'tca', 'Thhalv10003334m.g' => 'esa', 'Thhalv10005508m.g' => 'esa', 'Thhalv10005643m.g' => 'esa', 'Thhalv10007316m.g' => 'esa', 'Thhalv10009006m.g' => 'esa', 'Thhalv10009309m.g' => 'esa', 'Thhalv10014917m.g' => 'esa', 'Thhalv10014919m.g' => 'esa', 'Thhalv10015393m.g' => 'esa', 'Thhalv10016515m.g' => 'esa', 'Thhalv10029242m.g' => 'esa', 'TPR.G16654' => 'tpr', 'TPR.G20589' => 'tpr', 'TPR.G23029' => 'tpr', 'TPR.G27731' => 'tpr', 'TPR.G28889' => 'tpr', 'TPR.G28899' => 'tpr', 'TPR.G30846' => 'tpr', 'TPR.G5452' => 'tpr', 'TPR.G5713' => 'tpr', 'TPR.G9046' => 'tpr', 'TPR.G9061' => 'tpr', 'TWI09G1075' => 'twi', 'TWI12G0806' => 'twi', 'TWI18G0108' => 'twi', 'TWI53G1361' => 'twi', 'TWI73G0185' => 'twi', 'TWI73G0427' => 'twi', 'unitig_37.g12001' => 'ugi', 'unitig_747.g21660' => 'ugi', 'unitig_748.g7232' => 'ugi', 'unitig_748.g7315' => 'ugi', 'unitig_85.g27262' => 'ugi', 'unitig_92.g28220' => 'ugi', 'vmacro02632' => 'vma', 'vmacro08410' => 'vma', 'vmacro08411' => 'vma', 'vmacro15407' => 'vma', 'VMungo0251G3619' => 'vmu', 'VMungo0720G1204' => 'vmu', 'VMungo0720G1918' => 'vmu', 'VMungo0720G2387' => 'vmu', 'VMungo0720G2961' => 'vmu', 'VMungo1215G2154' => 'vmu', 'VMungo1383G2411' => 'vmu', 'Zm00001eb051130' => 'zma', 'Zm00001eb116830' => 'zma', 'Zm00001eb116850' => 'zma', 'Zm00001eb151740' => 'zma', 'Zm00001eb292360' => 'zma', 'Zm00001eb301640' => 'zma' ), 'gf_id' => 'HOM05D000856', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000856' ), 'data_identifier' => 'HOM05D000856', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000856', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p00010' => 'bna', 'A03p04160' => 'bna', 'A03p17160' => 'bna', 'A04p23370' => 'bna', 'A05p14860' => 'bna', 'A08p37020' => 'bna', 'A09p08050' => 'bna', 'A09p66800' => 'bna', 'A09p67940' => 'bna', 'A10p02680' => 'bna', 'A10p05320' => 'bna', 'Aa31LG1G20560' => 'aar', 'Aa31LG1G20610' => 'aar', 'Aa31LG1G7810' => 'aar', 'Aa31LG5G3590' => 'aar', 'Aa31LG5G6140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3819' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4683' => 'aag', 'Actinidia04480' => 'ach', 'Actinidia05466' => 'ach', 'Actinidia08445' => 'ach', 'Actinidia21170' => 'ach', 'Actinidia24812' => 'ach', 'Actinidia24951' => 'ach', 'Actinidia40088' => 'ach', 'Ah.02g111660' => 'amhyb', 'Ah.11g048900' => 'amhyb', 'Ah.11g049910' => 'amhyb', 'AL1G13870' => 'aly', 'AL1G13880' => 'aly', 'AL1G16760' => 'aly', 'AL390U10020' => 'aly', 'AL4G25520' => 'aly', 'AL6G19890' => 'aly', 'AL6G19900' => 'aly', 'AL6G19910' => 'aly', 'AL8G40100' => 'aly', 'Aqoxy2G03562' => 'aox', 'Aqoxy5G00316' => 'aox', 'Aqoxy5G00926' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1628KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1H403S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2FU6SJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.882I6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8YRY2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YN1SN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AF70II' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZA8L1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F916KL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHRD8H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KTZ8QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S22EMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8M29T' => 'arhy', 'AT1G04270' => 'ath', 'AT1G04280' => 'ath', 'AT1G06750' => 'ath', 'AT1G33850' => 'ath', 'AT2G30630' => 'ath', 'AT5G09490' => 'ath', 'AT5G09500' => 'ath', 'AT5G09510' => 'ath', 'AT5G43640' => 'ath', 'AT5G63070' => 'ath', 'ATR0605G315' => 'atr', 'Atru.chr11.175' => 'acertr', 'Atru.chr11.653' => 'acertr', 'Atru.chr3.1616' => 'acertr', 'Atru.chr4.2230' => 'acertr', 'Atru.chr4.2232' => 'acertr', 'Atru.chr5.1598' => 'acertr', 'Atru.chr5.1600' => 'acertr', 'Atru.chr5.2188' => 'acertr', 'AUR62008326' => 'cqu', 'AUR62011922' => 'cqu', 'AUR62011924' => 'cqu', 'AUR62021771' => 'cqu', 'AUR62032237' => 'cqu', 'AUR62032240' => 'cqu', 'BcaB01g05572' => 'bca', 'BcaB02g10337' => 'bca', 'BcaB04g19944' => 'bca', 'BcaB05g21548' => 'bca', 'BcaB05g21549' => 'bca', 'BcaB05g23227' => 'bca', 'BcaB06g26256' => 'bca', 'BcaB06g26257' => 'bca', 'BcaB06g28379' => 'bca', 'BcaC02g11159' => 'bca', 'BcaC03g13258' => 'bca', 'BcaC03g13259' => 'bca', 'BcaC05g24456' => 'bca', 'BcaC05g24457' => 'bca', 'BcaC07g36922' => 'bca', 'BcaC07g36923' => 'bca', 'BcaC07g42050' => 'bca', 'BcaC07g42176' => 'bca', 'BcaC07g42195' => 'bca', 'BcaC07g42196' => 'bca', 'BcaNung06674' => 'bca', 'BolC2t06351H' => 'bol', 'BolC2t06352H' => 'bol', 'BolC3t12993H' => 'bol', 'BolC4t23525H' => 'bol', 'BolC4t27475H' => 'bol', 'BolC5t29025H' => 'bol', 'BolC5t29026H' => 'bol', 'BolC8t46898H' => 'bol', 'BolC8t46899H' => 'bol', 'BolC8t52630H' => 'bol', 'BolC8t52765H' => 'bol', 'BolC9t53824H' => 'bol', 'BraA03t09760Z' => 'bra', 'BraA03t10990Z' => 'bra', 'BraA05t20413Z' => 'bra', 'BraA08t35602Z' => 'bra', 'BraA09t36458Z' => 'bra', 'BraA09t42018Z' => 'bra', 'BraA09t42129Z' => 'bra', 'BraA10t42536Z' => 'bra', 'BraA10t42537Z' => 'bra', 'C01p10690' => 'bna', 'C02p03890' => 'bna', 'C02p03900' => 'bna', 'C03p04620' => 'bna', 'C04p19870' => 'bna', 'C04p59670' => 'bna', 'C05p02460' => 'bna', 'C05p02470' => 'bna', 'C08p00980' => 'bna', 'C08p00990' => 'bna', 'C08p51030' => 'bna', 'C08p52360' => 'bna', 'C09p09120' => 'bna', 'CAN.G19.15' => 'can', 'CAN.G251.10' => 'can', 'CAN.G251.9' => 'can', 'CAN.G398.24' => 'can', 'CAN.G410.32' => 'can', 'CAN.G881.2' => 'can', 'CANSAT01G3025' => 'cansat', 'CANSAT78G1211' => 'cansat', 'CANSAT78G1218' => 'cansat', 'CANSAT78G1521' => 'cansat', 'CANSAT78G1670' => 'cansat', 'CARHR003600' => 'chi', 'CARHR003610' => 'chi', 'CARHR006290' => 'chi', 'CARHR006430' => 'chi', 'CARHR124110' => 'chi', 'CARHR203870' => 'chi', 'CARHR203880' => 'chi', 'CARHR203890' => 'chi', 'CARHR276880' => 'chi', 'Carub.0001s0346' => 'cru', 'Carub.0001s0347' => 'cru', 'Carub.0001s0607' => 'cru', 'Carub.0003s2768' => 'cru', 'Carub.0003s2769' => 'cru', 'Carub.0004s1178' => 'cru', 'Carub.0006s0806' => 'cru', 'Carub.0006s0807' => 'cru', 'Carub.0006s0808' => 'cru', 'Carub.0008s0501' => 'cru', 'Carub.0008s2379' => 'cru', 'Ca_08655_v3' => 'car', 'Ca_08922_v3' => 'car', 'Ca_08923_v3' => 'car', 'Ca_09119_v3' => 'car', 'Ca_09703_v3' => 'car', 'Ca_09705_v3' => 'car', 'Ca_09835_v3' => 'car', 'Ca_26403_v3' => 'car', 'Ca_30719_v3' => 'car', 'CBR_g17958' => 'cbr', 'CBR_g40516' => 'cbr', 'Cc00_g05350' => 'ccan', 'Cc01_g18690' => 'ccan', 'Cc03_g04830' => 'ccan', 'Cc03_g04850' => 'ccan', 'CDE02G4469' => 'cde', 'CDE06G0883' => 'cde', 'CDE06G1295' => 'cde', 'CDE06G1390' => 'cde', 'CDE07G0584' => 'cde', 'CDE07G1084' => 'cde', 'CDE08G1259' => 'cde', 'Cfa002341' => 'cfa', 'Cfa024337' => 'cfa', 'Ciclev10004749m.g' => 'ccl', 'Ciclev10006127m.g' => 'ccl', 'Ciclev10019720m.g' => 'ccl', 'Ciclev10022652m.g' => 'ccl', 'CiPaw.01G190400' => 'cil', 'CiPaw.01G190500' => 'cil', 'CiPaw.02G116400' => 'cil', 'CiPaw.02G116500' => 'cil', 'CiPaw.04G183000' => 'cil', 'CiPaw.04G183300' => 'cil', 'ClCG05G004610' => 'cla', 'ClCG05G004620' => 'cla', 'ClCG06G006730' => 'cla', 'ClCG06G006740' => 'cla', 'ClCG11G003690' => 'cla', 'COL.COLO4_08276' => 'col', 'COL.COLO4_08277' => 'col', 'COL.COLO4_15787' => 'col', 'COL.COLO4_15789' => 'col', 'Cpa.g.c44815' => 'cpa', 'Cpa.g.sc52.144' => 'cpa', 'Cpa.g.sc58.46' => 'cpa', 'Cpa.g.sc58.47' => 'cpa', 'Cre08.g360900' => 'cre', 'CsaV3_2G013030' => 'csa', 'CsaV3_2G013050' => 'csa', 'CsaV3_2G015620' => 'csa', 'CsaV3_3G012590' => 'csa', 'CsaV3_3G012600' => 'csa', 'CSS0001641' => 'camsi', 'CSS0008310' => 'camsi', 'CSS0013011' => 'camsi', 'CSS0017147' => 'camsi', 'CSS0022970' => 'camsi', 'CSS0025655' => 'camsi', 'CSS0028665' => 'camsi', 'CSS0029117' => 'camsi', 'CSS0032024' => 'camsi', 'CSS0039681' => 'camsi', 'CSS0046516' => 'camsi', 'CSS0050307' => 'camsi', 'DCAR_005871' => 'dca', 'DCAR_007342' => 'dca', 'DCAR_024228' => 'dca', 'DCAR_027277' => 'dca', 'DCAR_030718' => 'dca', 'Dinv20287' => 'din', 'Dinv22461' => 'din', 'Dinv22464' => 'din', 'Dinv29912' => 'din', 'Dinv29913' => 'din', 'Dinv34580' => 'din', 'Dinv34582' => 'din', 'Dinv44632' => 'din', 'Duzib052G0266' => 'dzi', 'Duzib133G0907' => 'dzi', 'Duzib133G1034' => 'dzi', 'Duzib138G0207' => 'dzi', 'Duzib138G0491' => 'dzi', 'Duzib151G0812' => 'dzi', 'Duzib151G1166' => 'dzi', 'Duzib168G0192' => 'dzi', 'Duzib211G0077' => 'dzi', 'Duzib212G0429' => 'dzi', 'Duzib212G0472' => 'dzi', 'ECA233G2617' => 'eca', 'ECA236G4188' => 'eca', 'ECA240G0936' => 'eca', 'ECA240G1129' => 'eca', 'ECA247G0623' => 'eca', 'EL10Ac5g10451' => 'bvu', 'EL10Ac5g10453' => 'bvu', 'EL10Ac5g10894' => 'bvu', 'Eucgr.H00192' => 'egr', 'Eucgr.H00193' => 'egr', 'Eucgr.H00194' => 'egr', 'Eucgr.J01562' => 'egr', 'Eucgr.K03301' => 'egr', 'FAN02G0632' => 'fan', 'FAN05G5378' => 'fan', 'FAN09G3247' => 'fan', 'FAN12G0435' => 'fan', 'FAN12G2426' => 'fan', 'FAN14G1707' => 'fan', 'FAN14G4725' => 'fan', 'FAN15G2071' => 'fan', 'FAN17G3065' => 'fan', 'FAN19G1376' => 'fan', 'FAN20G0354' => 'fan', 'FAN20G2429' => 'fan', 'FAN20G2658' => 'fan', 'FAN24G2343' => 'fan', 'FAN27G2362' => 'fan', 'FAN28G1765' => 'fan', 'FvH4_1g16020' => 'fve', 'FvH4_2g04890' => 'fve', 'FvH4_2g22270' => 'fve', 'FvH4_4g02630' => 'fve', 'FvH4_4g02640' => 'fve', 'FvH4_6g02650' => 'fve', 'Glyma.02G140600' => 'gma', 'Glyma.03G159900' => 'gma', 'Glyma.05G234800' => 'gma', 'Glyma.07G269600' => 'gma', 'Glyma.08G042300' => 'gma', 'Glyma.10G033500' => 'gma', 'Glyma.10G185200' => 'gma', 'Glyma.17G004300' => 'gma', 'Glyma.19G161900' => 'gma', 'Glyma.20G205100' => 'gma', 'Glyma.20G205200' => 'gma', 'Gohir.A01G139101' => 'ghi', 'Gohir.A02G035600' => 'ghi', 'Gohir.A02G117901' => 'ghi', 'Gohir.A07G210100' => 'ghi', 'Gohir.A07G210200' => 'ghi', 'Gohir.A08G061100' => 'ghi', 'Gohir.A09G223000' => 'ghi', 'Gohir.A09G223100' => 'ghi', 'Gohir.A10G113900' => 'ghi', 'Gohir.A10G114000' => 'ghi', 'Gohir.D02G042300' => 'ghi', 'Gohir.D07G216100' => 'ghi', 'Gohir.D07G216200' => 'ghi', 'Gohir.D08G070400' => 'ghi', 'Gohir.D09G225000' => 'ghi', 'Gohir.D09G225100' => 'ghi', 'Gohir.D10G152300' => 'ghi', 'Gohir.D10G153200' => 'ghi', 'Gohir.D11G133701' => 'ghi', 'Gorai.004G074100' => 'gra', 'Gorai.005G046800' => 'gra', 'Gorai.006G246500' => 'gra', 'Gorai.006G246600' => 'gra', 'Gorai.007G142900' => 'gra', 'Gorai.011G171000' => 'gra', 'Gorai.011G171100' => 'gra', 'Gorai.013G104300' => 'gra', 'Gorai.013G104400' => 'gra', 'GSVIVG01000754001' => 'vvi', 'GSVIVG01000756001' => 'vvi', 'GSVIVG01010903001' => 'vvi', 'GSVIVG01017623001' => 'vvi', 'GSVIVG01018113001' => 'vvi', 'GSVIVG01018116001' => 'vvi', 'GSVIVG01018118001' => 'vvi', 'HanXRQChr03g0076211' => 'han', 'HanXRQChr03g0092431' => 'han', 'HanXRQChr03g0092441' => 'han', 'HanXRQChr03g0092591' => 'han', 'HanXRQChr03g0092671' => 'han', 'HanXRQChr03g0092681' => 'han', 'HanXRQChr03g0092691' => 'han', 'HanXRQChr03g0092701' => 'han', 'HanXRQChr03g0092721' => 'han', 'HanXRQChr03g0092731' => 'han', 'HanXRQChr04g0113681' => 'han', 'HanXRQChr10g0281371' => 'han', 'HanXRQChr11g0337141' => 'han', 'HanXRQChr13g0424521' => 'han', 'HanXRQChr13g0424531' => 'han', 'HanXRQChr13g0424541' => 'han', 'HanXRQChr16g0498221' => 'han', 'Haze_04377' => 'cav', 'Haze_11298' => 'cav', 'Haze_24547' => 'cav', 'Haze_24550' => 'cav', 'Haze_26587' => 'cav', 'Hma1.2p1_0650F.1_g195410' => 'hma', 'Hma1.2p1_0893F.1_g233470' => 'hma', 'HPP92_006508' => 'vpl', 'HPP92_024780' => 'vpl', 'Hund02688' => 'sun', 'Hund09380' => 'sun', 'Hund09381' => 'sun', 'Hund09832' => 'sun', 'Hund09833' => 'sun', 'Hund11351' => 'sun', 'Hund11513' => 'sun', 'Lalb_Chr06g0162591' => 'lal', 'Lalb_Chr06g0162601' => 'lal', 'Lalb_Chr06g0169321' => 'lal', 'Lalb_Chr09g0330951' => 'lal', 'Lalb_Chr16g0387631' => 'lal', 'Lalb_Chr21g0306241' => 'lal', 'Lalb_Chr25g0290051' => 'lal', 'Lalb_Chr25g0290061' => 'lal', 'Lalb_Chr25g0290071' => 'lal', 'Lj1g0003876' => 'lja', 'Lj1P1207T36' => 'lonja', 'Lj2C1156G12' => 'lonja', 'Lj3A793G39' => 'lonja', 'Lj3C580G2' => 'lonja', 'Lj3C780G2' => 'lonja', 'Lj3C780T4' => 'lonja', 'Lj3C793G9' => 'lonja', 'Lj4g0012960' => 'lja', 'Lj5g0021252' => 'lja', 'Lj5g0021484' => 'lja', 'Lj5g0024528' => 'lja', 'Lj6A399T12' => 'lonja', 'Lj6A656G65' => 'lonja', 'Lsat_1_v5_gn_3_125500' => 'lsa', 'Lsat_1_v5_gn_3_125540' => 'lsa', 'Lsat_1_v5_gn_5_72701' => 'lsa', 'Lsat_1_v5_gn_8_91560' => 'lsa', 'Lsat_1_v5_gn_9_9640' => 'lsa', 'Manes.01G200600' => 'mes', 'Manes.01G200700' => 'mes', 'Manes.03G168900' => 'mes', 'Manes.03G169000' => 'mes', 'Manes.05G085801' => 'mes', 'Manes.05G086200' => 'mes', 'Manes.15G036700' => 'mes', 'Manes.15G036900' => 'mes', 'Mapoly0004s0172' => 'mpo', 'Mapoly0023s0001' => 'mpo', 'Mapoly0142s0012' => 'mpo', 'MBI01_g32854_MAGBIO' => 'mbi', 'MBI11_g24427_MAGBIO' => 'mbi', 'MBI11_g47319_MAGBIO' => 'mbi', 'MCO01G433' => 'mco', 'MD00G1187800' => 'mdo', 'MD04G1226500' => 'mdo', 'MD05G1203900' => 'mdo', 'MD10G1191100' => 'mdo', 'MD12G1243500' => 'mdo', 'MD13G1207000' => 'mdo', 'MD13G1207100' => 'mdo', 'MD16G1208600' => 'mdo', 'Medtr1g050352' => 'mtr', 'Medtr1g070385' => 'mtr', 'Medtr1g070450' => 'mtr', 'Medtr1g075200' => 'mtr', 'Medtr1g075250' => 'mtr', 'Medtr1g075260' => 'mtr', 'Medtr1g475250' => 'mtr', 'Medtr4g075450' => 'mtr', 'Medtr7g096300' => 'mtr', 'Medtr8g105110' => 'mtr', 'MELO3C006470.2' => 'cme', 'MELO3C006471.2' => 'cme', 'MELO3C020772.2' => 'cme', 'MELO3C026780.2' => 'cme', 'MELO3C026781.2' => 'cme', 'Migut.D00390' => 'egut', 'Migut.G00435' => 'egut', 'Migut.G00436' => 'egut', 'Migut.G00718' => 'egut', 'MSTRG.21891' => 'ama', 'MSTRG.26910' => 'ama', 'MSTRG.4099' => 'ama', 'MSTRG.9925' => 'ama', 'Nitab4.5_0000165g0010' => 'nta', 'Nitab4.5_0000209g0180' => 'nta', 'Nitab4.5_0000244g0440' => 'nta', 'Nitab4.5_0000525g0220' => 'nta', 'Nitab4.5_0001597g0020' => 'nta', 'Nitab4.5_0001878g0040' => 'nta', 'Nitab4.5_0001878g0060' => 'nta', 'Nitab4.5_0002838g0100' => 'nta', 'Nitab4.5_0002838g0120' => 'nta', 'Nitab4.5_0004798g0030' => 'nta', 'Nitab4.5_0005420g0010' => 'nta', 'Nitab4.5_0005507g0010' => 'nta', 'Nitab4.5_0005574g0020' => 'nta', 'Nitab4.5_0005838g0010' => 'nta', 'Nitab4.5_0010580g0020' => 'nta', 'Nn1g02599' => 'nnu', 'Nn1g02608' => 'nnu', 'Nn3g17742' => 'nnu', 'Nn3g19534' => 'nnu', 'Nn3g19535' => 'nnu', 'Oeu008790.1' => 'oeu', 'Oeu008792.1' => 'oeu', 'Oeu032590.1' => 'oeu', 'Oeu035349.1' => 'oeu', 'Oeu049791.1' => 'oeu', 'Os01g0774500' => 'osa', 'Os03g0628800' => 'osa', 'Os03g0798600' => 'osa', 'Os05g0508800' => 'osa', 'Peaxi162Scf00036g02018' => 'pax', 'Peaxi162Scf00578g00032' => 'pax', 'Peaxi162Scf00578g00317' => 'pax', 'Peaxi162Scf00785g00114' => 'pax', 'Peaxi162Scf00813g00119' => 'pax', 'Peaxi162Scf00906g00227' => 'pax', 'PGR004G0875' => 'pgr', 'PGR004G2424' => 'pgr', 'PGR031G1239' => 'pgr', 'PGR031G2474' => 'pgr', 'PGR044G0423' => 'pgr', 'PGSC0003DMG400001128' => 'stu', 'PGSC0003DMG400007336' => 'stu', 'PGSC0003DMG400016318' => 'stu', 'PGSC0003DMG400016319' => 'stu', 'PGSC0003DMG400018074' => 'stu', 'Phvul.001G157700' => 'pvu', 'Phvul.002G148550' => 'pvu', 'Phvul.002G320200' => 'pvu', 'Phvul.003G089200' => 'pvu', 'Phvul.007G126000' => 'pvu', 'Phvul.007G126100' => 'pvu', 'Phvul.007G178000' => 'pvu', 'Phvul.007G178200' => 'pvu', 'Potri.002G043000' => 'ptr', 'Potri.002G043200' => 'ptr', 'Potri.003G123750' => 'ptr', 'Potri.005G055401' => 'ptr', 'Potri.005G219700' => 'ptr', 'Potri.005G220000' => 'ptr', 'Potri.008G161901' => 'ptr', 'Potri.008G162000' => 'ptr', 'Potri.008G162400' => 'ptr', 'Potri.010G076900' => 'ptr', 'Pp3c12_9180' => 'ppa', 'Pp3c13_19770' => 'ppa', 'Pp3c14_22950' => 'ppa', 'Pp3c16_12160' => 'ppa', 'Pp3c27_7820' => 'ppa', 'Pp3c2_3490' => 'ppa', 'Pp3c3_23700' => 'ppa', 'Pp3c3_36520' => 'ppa', 'Pp3c4_15250' => 'ppa', 'PRCOL_00007002' => 'pco', 'Prupe.1G030600' => 'ppe', 'Prupe.1G030700' => 'ppe', 'Prupe.6G345200' => 'ppe', 'Prupe.8G230300' => 'ppe', 'Prupe.8G230500' => 'ppe', 'Psat3g059600' => 'psa', 'Psat5g200920' => 'psa', 'Psat6g056440' => 'psa', 'Psat6g057360' => 'psa', 'Psat6g134120' => 'psa', 'Psat6g134160' => 'psa', 'Psat7g008640' => 'psa', 'Psat7g185240' => 'psa', 'PSO017G1330' => 'pso', 'PSO063G6097' => 'pso', 'PSO170G0835' => 'pso', 'PSO170G2499' => 'pso', 'PSO210G5058' => 'pso', 'PSO210G6154' => 'pso', 'PSO585G0031' => 'pso', 'PSO832G0264' => 'pso', 'PSO832G4288' => 'pso', 'QL03p027355' => 'qlo', 'QL03p027430' => 'qlo', 'QL04p081380' => 'qlo', 'QL06p015642' => 'qlo', 'QL06p015650' => 'qlo', 'QL06p015686' => 'qlo', 'QL12p042927' => 'qlo', 'QL93p1863_0035' => 'qlo', 'RcHm_v2.0_Chr3g0450581' => 'rch', 'RcHm_v2.0_Chr4g0390371' => 'rch', 'RcHm_v2.0_Chr4g0390381' => 'rch', 'RcHm_v2.0_Chr4g0390491' => 'rch', 'RcHm_v2.0_Chr4g0390501' => 'rch', 'RcHm_v2.0_Chr6g0289231' => 'rch', 'Rhsim04G0190400' => 'rsi', 'Rhsim04G0190500' => 'rsi', 'Rhsim04G0190600' => 'rsi', 'Rhsim13G0031400' => 'rsi', 'Rhsim13G0165600' => 'rsi', 'RhsimUnG0114600' => 'rsi', 'RhsimUnG0114700' => 'rsi', 'Sabra02G0034800' => 'sbr', 'Sabra02G0035100' => 'sbr', 'Sabra05G0168600' => 'sbr', 'Sabra05G0168800' => 'sbr', 'Sabra08G0123700' => 'sbr', 'Sabra10G0031900' => 'sbr', 'Sabra13G0039000' => 'sbr', 'SalBow2G0782' => 'sbo', 'SalBow2G1403' => 'sbo', 'SalBow4G0074' => 'sbo', 'SalBow4G2635' => 'sbo', 'SalBow5G3010' => 'sbo', 'Sc05g0000870' => 'sci', 'Sc05g0000890' => 'sci', 'Sc13g0005000' => 'sci', 'Sc13g0005030' => 'sci', 'Sc19g0003790' => 'sci', 'Sc19g0003800' => 'sci', 'Sed0003467' => 'sed', 'Sed0009355' => 'sed', 'Sed0009894' => 'sed', 'Sed0011972' => 'sed', 'Sed0021483' => 'sed', 'Sed0021750' => 'sed', 'Sed0026279' => 'sed', 'SEGI_05312' => 'sgi', 'SEGI_10112' => 'sgi', 'SEGI_15835' => 'sgi', 'SEGI_30386' => 'sgi', 'SEGI_34122' => 'sgi', 'SEGI_35063' => 'sgi', 'SGA_v2.0_scaffold101G29794' => 'sas', 'SGA_v2.0_scaffold1G00573' => 'sas', 'SGA_v2.0_scaffold79G25637' => 'sas', 'SGA_v2.0_scaffold88G27283' => 'sas', 'SGA_v2.0_scaffold88G27285' => 'sas', 'SGA_v2.0_scaffold88G27331' => 'sas', 'SHI09937' => 'shi', 'SMO119G0302' => 'smo', 'SMO137G0231' => 'smo', 'SMO367G1151' => 'smo', 'Solyc02g082000.3' => 'sly', 'Solyc06g031670.3' => 'sly', 'Solyc06g053810.3' => 'sly', 'Solyc07g025457.1' => 'sly', 'Solyc08g059740.1' => 'sly', 'Solyc08g059750.3' => 'sly', 'Solyc09g083370.3' => 'sly', 'Solyc12g038950.3' => 'sly', 'Sopen02g026630' => 'spe', 'Sopen06g018930' => 'spe', 'Sopen06g018940' => 'spe', 'Sopen08g009460' => 'spe', 'Sopen09g032290' => 'spe', 'Sp1g03080' => 'spa', 'Sp1g03090' => 'spa', 'Sp1g05480' => 'spa', 'Sp2g07860' => 'spa', 'Sp2g08430' => 'spa', 'Sp2g08440' => 'spa', 'Sp2g26200' => 'spa', 'Sp4g13170' => 'spa', 'Sp6g33840' => 'spa', 'SpUn1204_0010' => 'spa', 'TAR365G0908' => 'tar', 'TAR381G1270' => 'tar', 'TAR381G1651' => 'tar', 'TAR625G1131' => 'tar', 'TAR633G0962' => 'tar', 'TAR633G1729' => 'tar', 'TAR633G1864' => 'tar', 'TAR636G0221' => 'tar', 'TAR636G0314' => 'tar', 'TAR636G3202' => 'tar', 'THA.LOC104800805' => 'tha', 'THA.LOC104801096' => 'tha', 'THA.LOC104801555' => 'tha', 'THA.LOC104808491' => 'tha', 'THA.LOC104808595' => 'tha', 'THA.LOC104815985' => 'tha', 'THA.LOC104822250' => 'tha', 'THA.LOC104826071' => 'tha', 'Thecc.01G265200' => 'tca', 'Thecc.01G265300' => 'tca', 'Thecc.01G265700' => 'tca', 'Thecc.03G109100' => 'tca', 'Thecc.04G245900' => 'tca', 'Thecc.04G246000' => 'tca', 'Thhalv10003334m.g' => 'esa', 'Thhalv10005508m.g' => 'esa', 'Thhalv10005643m.g' => 'esa', 'Thhalv10007316m.g' => 'esa', 'Thhalv10009006m.g' => 'esa', 'Thhalv10009309m.g' => 'esa', 'Thhalv10014917m.g' => 'esa', 'Thhalv10014919m.g' => 'esa', 'Thhalv10015393m.g' => 'esa', 'Thhalv10016515m.g' => 'esa', 'Thhalv10029242m.g' => 'esa', 'TPR.G16654' => 'tpr', 'TPR.G20589' => 'tpr', 'TPR.G23029' => 'tpr', 'TPR.G27731' => 'tpr', 'TPR.G28889' => 'tpr', 'TPR.G28899' => 'tpr', 'TPR.G30846' => 'tpr', 'TPR.G5452' => 'tpr', 'TPR.G5713' => 'tpr', 'TPR.G9046' => 'tpr', 'TPR.G9061' => 'tpr', 'TWI09G1075' => 'twi', 'TWI12G0806' => 'twi', 'TWI18G0108' => 'twi', 'TWI53G1361' => 'twi', 'TWI73G0185' => 'twi', 'TWI73G0427' => 'twi', 'unitig_37.g12001' => 'ugi', 'unitig_747.g21660' => 'ugi', 'unitig_748.g7232' => 'ugi', 'unitig_748.g7315' => 'ugi', 'unitig_85.g27262' => 'ugi', 'unitig_92.g28220' => 'ugi', 'vmacro02632' => 'vma', 'vmacro08410' => 'vma', 'vmacro08411' => 'vma', 'vmacro15407' => 'vma', 'VMungo0251G3619' => 'vmu', 'VMungo0720G1204' => 'vmu', 'VMungo0720G1918' => 'vmu', 'VMungo0720G2387' => 'vmu', 'VMungo0720G2961' => 'vmu', 'VMungo1215G2154' => 'vmu', 'VMungo1383G2411' => 'vmu', 'Zm00001eb051130' => 'zma', 'Zm00001eb116830' => 'zma', 'Zm00001eb116850' => 'zma', 'Zm00001eb151740' => 'zma', 'Zm00001eb292360' => 'zma', 'Zm00001eb301640' => 'zma' ) $gf_id = 'HOM05D000856' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000856' ) $data_identifier = 'HOM05D000856' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 13, 'ath' => (int) 10, 'atr' => (int) 1, 'acertr' => (int) 8, 'cqu' => (int) 6, 'bca' => (int) 21, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 11, 'car' => (int) 9, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 8, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 5, 'fan' => (int) 16, 'fve' => (int) 6, 'gma' => (int) 11, 'ghi' => (int) 19, 'gra' => (int) 9, 'vvi' => (int) 7, 'han' => (int) 17, 'cav' => (int) 5, 'hma' => (int) 2, 'vpl' => (int) 2, 'sun' => (int) 7, 'lal' => (int) 9, 'lja' => (int) 5, 'lonja' => (int) 9, 'lsa' => (int) 5, 'mes' => (int) 8, 'mpo' => (int) 3, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 10, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 15, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 9, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 9, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 6, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 5, 'spa' => (int) 10, 'tar' => (int) 10, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 11, 'tpr' => (int) 11, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 4, 'vmu' => (int) 7, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb301640' $species_info = array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ) $local_species = 'gma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000856', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p00010' => 'bna', 'A03p04160' => 'bna', 'A03p17160' => 'bna', 'A04p23370' => 'bna', 'A05p14860' => 'bna', 'A08p37020' => 'bna', 'A09p08050' => 'bna', 'A09p66800' => 'bna', 'A09p67940' => 'bna', 'A10p02680' => 'bna', 'A10p05320' => 'bna', 'Aa31LG1G20560' => 'aar', 'Aa31LG1G20610' => 'aar', 'Aa31LG1G7810' => 'aar', 'Aa31LG5G3590' => 'aar', 'Aa31LG5G6140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3819' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4683' => 'aag', 'Actinidia04480' => 'ach', 'Actinidia05466' => 'ach', 'Actinidia08445' => 'ach', 'Actinidia21170' => 'ach', 'Actinidia24812' => 'ach', 'Actinidia24951' => 'ach', 'Actinidia40088' => 'ach', 'Ah.02g111660' => 'amhyb', 'Ah.11g048900' => 'amhyb', 'Ah.11g049910' => 'amhyb', 'AL1G13870' => 'aly', 'AL1G13880' => 'aly', 'AL1G16760' => 'aly', 'AL390U10020' => 'aly', 'AL4G25520' => 'aly', 'AL6G19890' => 'aly', 'AL6G19900' => 'aly', 'AL6G19910' => 'aly', 'AL8G40100' => 'aly', 'Aqoxy2G03562' => 'aox', 'Aqoxy5G00316' => 'aox', 'Aqoxy5G00926' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1628KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1H403S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2FU6SJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.882I6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8YRY2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YN1SN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AF70II' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZA8L1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F916KL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHRD8H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KTZ8QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S22EMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8M29T' => 'arhy', 'AT1G04270' => 'ath', 'AT1G04280' => 'ath', 'AT1G06750' => 'ath', 'AT1G33850' => 'ath', 'AT2G30630' => 'ath', 'AT5G09490' => 'ath', 'AT5G09500' => 'ath', 'AT5G09510' => 'ath', 'AT5G43640' => 'ath', 'AT5G63070' => 'ath', 'ATR0605G315' => 'atr', 'Atru.chr11.175' => 'acertr', 'Atru.chr11.653' => 'acertr', 'Atru.chr3.1616' => 'acertr', 'Atru.chr4.2230' => 'acertr', 'Atru.chr4.2232' => 'acertr', 'Atru.chr5.1598' => 'acertr', 'Atru.chr5.1600' => 'acertr', 'Atru.chr5.2188' => 'acertr', 'AUR62008326' => 'cqu', 'AUR62011922' => 'cqu', 'AUR62011924' => 'cqu', 'AUR62021771' => 'cqu', 'AUR62032237' => 'cqu', 'AUR62032240' => 'cqu', 'BcaB01g05572' => 'bca', 'BcaB02g10337' => 'bca', 'BcaB04g19944' => 'bca', 'BcaB05g21548' => 'bca', 'BcaB05g21549' => 'bca', 'BcaB05g23227' => 'bca', 'BcaB06g26256' => 'bca', 'BcaB06g26257' => 'bca', 'BcaB06g28379' => 'bca', 'BcaC02g11159' => 'bca', 'BcaC03g13258' => 'bca', 'BcaC03g13259' => 'bca', 'BcaC05g24456' => 'bca', 'BcaC05g24457' => 'bca', 'BcaC07g36922' => 'bca', 'BcaC07g36923' => 'bca', 'BcaC07g42050' => 'bca', 'BcaC07g42176' => 'bca', 'BcaC07g42195' => 'bca', 'BcaC07g42196' => 'bca', 'BcaNung06674' => 'bca', 'BolC2t06351H' => 'bol', 'BolC2t06352H' => 'bol', 'BolC3t12993H' => 'bol', 'BolC4t23525H' => 'bol', 'BolC4t27475H' => 'bol', 'BolC5t29025H' => 'bol', 'BolC5t29026H' => 'bol', 'BolC8t46898H' => 'bol', 'BolC8t46899H' => 'bol', 'BolC8t52630H' => 'bol', 'BolC8t52765H' => 'bol', 'BolC9t53824H' => 'bol', 'BraA03t09760Z' => 'bra', 'BraA03t10990Z' => 'bra', 'BraA05t20413Z' => 'bra', 'BraA08t35602Z' => 'bra', 'BraA09t36458Z' => 'bra', 'BraA09t42018Z' => 'bra', 'BraA09t42129Z' => 'bra', 'BraA10t42536Z' => 'bra', 'BraA10t42537Z' => 'bra', 'C01p10690' => 'bna', 'C02p03890' => 'bna', 'C02p03900' => 'bna', 'C03p04620' => 'bna', 'C04p19870' => 'bna', 'C04p59670' => 'bna', 'C05p02460' => 'bna', 'C05p02470' => 'bna', 'C08p00980' => 'bna', 'C08p00990' => 'bna', 'C08p51030' => 'bna', 'C08p52360' => 'bna', 'C09p09120' => 'bna', 'CAN.G19.15' => 'can', 'CAN.G251.10' => 'can', 'CAN.G251.9' => 'can', 'CAN.G398.24' => 'can', 'CAN.G410.32' => 'can', 'CAN.G881.2' => 'can', 'CANSAT01G3025' => 'cansat', 'CANSAT78G1211' => 'cansat', 'CANSAT78G1218' => 'cansat', 'CANSAT78G1521' => 'cansat', 'CANSAT78G1670' => 'cansat', 'CARHR003600' => 'chi', 'CARHR003610' => 'chi', 'CARHR006290' => 'chi', 'CARHR006430' => 'chi', 'CARHR124110' => 'chi', 'CARHR203870' => 'chi', 'CARHR203880' => 'chi', 'CARHR203890' => 'chi', 'CARHR276880' => 'chi', 'Carub.0001s0346' => 'cru', 'Carub.0001s0347' => 'cru', 'Carub.0001s0607' => 'cru', 'Carub.0003s2768' => 'cru', 'Carub.0003s2769' => 'cru', 'Carub.0004s1178' => 'cru', 'Carub.0006s0806' => 'cru', 'Carub.0006s0807' => 'cru', 'Carub.0006s0808' => 'cru', 'Carub.0008s0501' => 'cru', 'Carub.0008s2379' => 'cru', 'Ca_08655_v3' => 'car', 'Ca_08922_v3' => 'car', 'Ca_08923_v3' => 'car', 'Ca_09119_v3' => 'car', 'Ca_09703_v3' => 'car', 'Ca_09705_v3' => 'car', 'Ca_09835_v3' => 'car', 'Ca_26403_v3' => 'car', 'Ca_30719_v3' => 'car', 'CBR_g17958' => 'cbr', 'CBR_g40516' => 'cbr', 'Cc00_g05350' => 'ccan', 'Cc01_g18690' => 'ccan', 'Cc03_g04830' => 'ccan', 'Cc03_g04850' => 'ccan', 'CDE02G4469' => 'cde', 'CDE06G0883' => 'cde', 'CDE06G1295' => 'cde', 'CDE06G1390' => 'cde', 'CDE07G0584' => 'cde', 'CDE07G1084' => 'cde', 'CDE08G1259' => 'cde', 'Cfa002341' => 'cfa', 'Cfa024337' => 'cfa', 'Ciclev10004749m.g' => 'ccl', 'Ciclev10006127m.g' => 'ccl', 'Ciclev10019720m.g' => 'ccl', 'Ciclev10022652m.g' => 'ccl', 'CiPaw.01G190400' => 'cil', 'CiPaw.01G190500' => 'cil', 'CiPaw.02G116400' => 'cil', 'CiPaw.02G116500' => 'cil', 'CiPaw.04G183000' => 'cil', 'CiPaw.04G183300' => 'cil', 'ClCG05G004610' => 'cla', 'ClCG05G004620' => 'cla', 'ClCG06G006730' => 'cla', 'ClCG06G006740' => 'cla', 'ClCG11G003690' => 'cla', 'COL.COLO4_08276' => 'col', 'COL.COLO4_08277' => 'col', 'COL.COLO4_15787' => 'col', 'COL.COLO4_15789' => 'col', 'Cpa.g.c44815' => 'cpa', 'Cpa.g.sc52.144' => 'cpa', 'Cpa.g.sc58.46' => 'cpa', 'Cpa.g.sc58.47' => 'cpa', 'Cre08.g360900' => 'cre', 'CsaV3_2G013030' => 'csa', 'CsaV3_2G013050' => 'csa', 'CsaV3_2G015620' => 'csa', 'CsaV3_3G012590' => 'csa', 'CsaV3_3G012600' => 'csa', 'CSS0001641' => 'camsi', 'CSS0008310' => 'camsi', 'CSS0013011' => 'camsi', 'CSS0017147' => 'camsi', 'CSS0022970' => 'camsi', 'CSS0025655' => 'camsi', 'CSS0028665' => 'camsi', 'CSS0029117' => 'camsi', 'CSS0032024' => 'camsi', 'CSS0039681' => 'camsi', 'CSS0046516' => 'camsi', 'CSS0050307' => 'camsi', 'DCAR_005871' => 'dca', 'DCAR_007342' => 'dca', 'DCAR_024228' => 'dca', 'DCAR_027277' => 'dca', 'DCAR_030718' => 'dca', 'Dinv20287' => 'din', 'Dinv22461' => 'din', 'Dinv22464' => 'din', 'Dinv29912' => 'din', 'Dinv29913' => 'din', 'Dinv34580' => 'din', 'Dinv34582' => 'din', 'Dinv44632' => 'din', 'Duzib052G0266' => 'dzi', 'Duzib133G0907' => 'dzi', 'Duzib133G1034' => 'dzi', 'Duzib138G0207' => 'dzi', 'Duzib138G0491' => 'dzi', 'Duzib151G0812' => 'dzi', 'Duzib151G1166' => 'dzi', 'Duzib168G0192' => 'dzi', 'Duzib211G0077' => 'dzi', 'Duzib212G0429' => 'dzi', 'Duzib212G0472' => 'dzi', 'ECA233G2617' => 'eca', 'ECA236G4188' => 'eca', 'ECA240G0936' => 'eca', 'ECA240G1129' => 'eca', 'ECA247G0623' => 'eca', 'EL10Ac5g10451' => 'bvu', 'EL10Ac5g10453' => 'bvu', 'EL10Ac5g10894' => 'bvu', 'Eucgr.H00192' => 'egr', 'Eucgr.H00193' => 'egr', 'Eucgr.H00194' => 'egr', 'Eucgr.J01562' => 'egr', 'Eucgr.K03301' => 'egr', 'FAN02G0632' => 'fan', 'FAN05G5378' => 'fan', 'FAN09G3247' => 'fan', 'FAN12G0435' => 'fan', 'FAN12G2426' => 'fan', 'FAN14G1707' => 'fan', 'FAN14G4725' => 'fan', 'FAN15G2071' => 'fan', 'FAN17G3065' => 'fan', 'FAN19G1376' => 'fan', 'FAN20G0354' => 'fan', 'FAN20G2429' => 'fan', 'FAN20G2658' => 'fan', 'FAN24G2343' => 'fan', 'FAN27G2362' => 'fan', 'FAN28G1765' => 'fan', 'FvH4_1g16020' => 'fve', 'FvH4_2g04890' => 'fve', 'FvH4_2g22270' => 'fve', 'FvH4_4g02630' => 'fve', 'FvH4_4g02640' => 'fve', 'FvH4_6g02650' => 'fve', 'Glyma.02G140600' => 'gma', 'Glyma.03G159900' => 'gma', 'Glyma.05G234800' => 'gma', 'Glyma.07G269600' => 'gma', 'Glyma.08G042300' => 'gma', 'Glyma.10G033500' => 'gma', 'Glyma.10G185200' => 'gma', 'Glyma.17G004300' => 'gma', 'Glyma.19G161900' => 'gma', 'Glyma.20G205100' => 'gma', 'Glyma.20G205200' => 'gma', 'Gohir.A01G139101' => 'ghi', 'Gohir.A02G035600' => 'ghi', 'Gohir.A02G117901' => 'ghi', 'Gohir.A07G210100' => 'ghi', 'Gohir.A07G210200' => 'ghi', 'Gohir.A08G061100' => 'ghi', 'Gohir.A09G223000' => 'ghi', 'Gohir.A09G223100' => 'ghi', 'Gohir.A10G113900' => 'ghi', 'Gohir.A10G114000' => 'ghi', 'Gohir.D02G042300' => 'ghi', 'Gohir.D07G216100' => 'ghi', 'Gohir.D07G216200' => 'ghi', 'Gohir.D08G070400' => 'ghi', 'Gohir.D09G225000' => 'ghi', 'Gohir.D09G225100' => 'ghi', 'Gohir.D10G152300' => 'ghi', 'Gohir.D10G153200' => 'ghi', 'Gohir.D11G133701' => 'ghi', 'Gorai.004G074100' => 'gra', 'Gorai.005G046800' => 'gra', 'Gorai.006G246500' => 'gra', 'Gorai.006G246600' => 'gra', 'Gorai.007G142900' => 'gra', 'Gorai.011G171000' => 'gra', 'Gorai.011G171100' => 'gra', 'Gorai.013G104300' => 'gra', 'Gorai.013G104400' => 'gra', 'GSVIVG01000754001' => 'vvi', 'GSVIVG01000756001' => 'vvi', 'GSVIVG01010903001' => 'vvi', 'GSVIVG01017623001' => 'vvi', 'GSVIVG01018113001' => 'vvi', 'GSVIVG01018116001' => 'vvi', 'GSVIVG01018118001' => 'vvi', 'HanXRQChr03g0076211' => 'han', 'HanXRQChr03g0092431' => 'han', 'HanXRQChr03g0092441' => 'han', 'HanXRQChr03g0092591' => 'han', 'HanXRQChr03g0092671' => 'han', 'HanXRQChr03g0092681' => 'han', 'HanXRQChr03g0092691' => 'han', 'HanXRQChr03g0092701' => 'han', 'HanXRQChr03g0092721' => 'han', 'HanXRQChr03g0092731' => 'han', 'HanXRQChr04g0113681' => 'han', 'HanXRQChr10g0281371' => 'han', 'HanXRQChr11g0337141' => 'han', 'HanXRQChr13g0424521' => 'han', 'HanXRQChr13g0424531' => 'han', 'HanXRQChr13g0424541' => 'han', 'HanXRQChr16g0498221' => 'han', 'Haze_04377' => 'cav', 'Haze_11298' => 'cav', 'Haze_24547' => 'cav', 'Haze_24550' => 'cav', 'Haze_26587' => 'cav', 'Hma1.2p1_0650F.1_g195410' => 'hma', 'Hma1.2p1_0893F.1_g233470' => 'hma', 'HPP92_006508' => 'vpl', 'HPP92_024780' => 'vpl', 'Hund02688' => 'sun', 'Hund09380' => 'sun', 'Hund09381' => 'sun', 'Hund09832' => 'sun', 'Hund09833' => 'sun', 'Hund11351' => 'sun', 'Hund11513' => 'sun', 'Lalb_Chr06g0162591' => 'lal', 'Lalb_Chr06g0162601' => 'lal', 'Lalb_Chr06g0169321' => 'lal', 'Lalb_Chr09g0330951' => 'lal', 'Lalb_Chr16g0387631' => 'lal', 'Lalb_Chr21g0306241' => 'lal', 'Lalb_Chr25g0290051' => 'lal', 'Lalb_Chr25g0290061' => 'lal', 'Lalb_Chr25g0290071' => 'lal', 'Lj1g0003876' => 'lja', 'Lj1P1207T36' => 'lonja', 'Lj2C1156G12' => 'lonja', 'Lj3A793G39' => 'lonja', 'Lj3C580G2' => 'lonja', 'Lj3C780G2' => 'lonja', 'Lj3C780T4' => 'lonja', 'Lj3C793G9' => 'lonja', 'Lj4g0012960' => 'lja', 'Lj5g0021252' => 'lja', 'Lj5g0021484' => 'lja', 'Lj5g0024528' => 'lja', 'Lj6A399T12' => 'lonja', 'Lj6A656G65' => 'lonja', 'Lsat_1_v5_gn_3_125500' => 'lsa', 'Lsat_1_v5_gn_3_125540' => 'lsa', 'Lsat_1_v5_gn_5_72701' => 'lsa', 'Lsat_1_v5_gn_8_91560' => 'lsa', 'Lsat_1_v5_gn_9_9640' => 'lsa', 'Manes.01G200600' => 'mes', 'Manes.01G200700' => 'mes', 'Manes.03G168900' => 'mes', 'Manes.03G169000' => 'mes', 'Manes.05G085801' => 'mes', 'Manes.05G086200' => 'mes', 'Manes.15G036700' => 'mes', 'Manes.15G036900' => 'mes', 'Mapoly0004s0172' => 'mpo', 'Mapoly0023s0001' => 'mpo', 'Mapoly0142s0012' => 'mpo', 'MBI01_g32854_MAGBIO' => 'mbi', 'MBI11_g24427_MAGBIO' => 'mbi', 'MBI11_g47319_MAGBIO' => 'mbi', 'MCO01G433' => 'mco', 'MD00G1187800' => 'mdo', 'MD04G1226500' => 'mdo', 'MD05G1203900' => 'mdo', 'MD10G1191100' => 'mdo', 'MD12G1243500' => 'mdo', 'MD13G1207000' => 'mdo', 'MD13G1207100' => 'mdo', 'MD16G1208600' => 'mdo', 'Medtr1g050352' => 'mtr', 'Medtr1g070385' => 'mtr', 'Medtr1g070450' => 'mtr', 'Medtr1g075200' => 'mtr', 'Medtr1g075250' => 'mtr', 'Medtr1g075260' => 'mtr', 'Medtr1g475250' => 'mtr', 'Medtr4g075450' => 'mtr', 'Medtr7g096300' => 'mtr', 'Medtr8g105110' => 'mtr', 'MELO3C006470.2' => 'cme', 'MELO3C006471.2' => 'cme', 'MELO3C020772.2' => 'cme', 'MELO3C026780.2' => 'cme', 'MELO3C026781.2' => 'cme', 'Migut.D00390' => 'egut', 'Migut.G00435' => 'egut', 'Migut.G00436' => 'egut', 'Migut.G00718' => 'egut', 'MSTRG.21891' => 'ama', 'MSTRG.26910' => 'ama', 'MSTRG.4099' => 'ama', 'MSTRG.9925' => 'ama', 'Nitab4.5_0000165g0010' => 'nta', 'Nitab4.5_0000209g0180' => 'nta', 'Nitab4.5_0000244g0440' => 'nta', 'Nitab4.5_0000525g0220' => 'nta', 'Nitab4.5_0001597g0020' => 'nta', 'Nitab4.5_0001878g0040' => 'nta', 'Nitab4.5_0001878g0060' => 'nta', 'Nitab4.5_0002838g0100' => 'nta', 'Nitab4.5_0002838g0120' => 'nta', 'Nitab4.5_0004798g0030' => 'nta', 'Nitab4.5_0005420g0010' => 'nta', 'Nitab4.5_0005507g0010' => 'nta', 'Nitab4.5_0005574g0020' => 'nta', 'Nitab4.5_0005838g0010' => 'nta', 'Nitab4.5_0010580g0020' => 'nta', 'Nn1g02599' => 'nnu', 'Nn1g02608' => 'nnu', 'Nn3g17742' => 'nnu', 'Nn3g19534' => 'nnu', 'Nn3g19535' => 'nnu', 'Oeu008790.1' => 'oeu', 'Oeu008792.1' => 'oeu', 'Oeu032590.1' => 'oeu', 'Oeu035349.1' => 'oeu', 'Oeu049791.1' => 'oeu', 'Os01g0774500' => 'osa', 'Os03g0628800' => 'osa', 'Os03g0798600' => 'osa', 'Os05g0508800' => 'osa', 'Peaxi162Scf00036g02018' => 'pax', 'Peaxi162Scf00578g00032' => 'pax', 'Peaxi162Scf00578g00317' => 'pax', 'Peaxi162Scf00785g00114' => 'pax', 'Peaxi162Scf00813g00119' => 'pax', 'Peaxi162Scf00906g00227' => 'pax', 'PGR004G0875' => 'pgr', 'PGR004G2424' => 'pgr', 'PGR031G1239' => 'pgr', 'PGR031G2474' => 'pgr', 'PGR044G0423' => 'pgr', 'PGSC0003DMG400001128' => 'stu', 'PGSC0003DMG400007336' => 'stu', 'PGSC0003DMG400016318' => 'stu', 'PGSC0003DMG400016319' => 'stu', 'PGSC0003DMG400018074' => 'stu', 'Phvul.001G157700' => 'pvu', 'Phvul.002G148550' => 'pvu', 'Phvul.002G320200' => 'pvu', 'Phvul.003G089200' => 'pvu', 'Phvul.007G126000' => 'pvu', 'Phvul.007G126100' => 'pvu', 'Phvul.007G178000' => 'pvu', 'Phvul.007G178200' => 'pvu', 'Potri.002G043000' => 'ptr', 'Potri.002G043200' => 'ptr', 'Potri.003G123750' => 'ptr', 'Potri.005G055401' => 'ptr', 'Potri.005G219700' => 'ptr', 'Potri.005G220000' => 'ptr', 'Potri.008G161901' => 'ptr', 'Potri.008G162000' => 'ptr', 'Potri.008G162400' => 'ptr', 'Potri.010G076900' => 'ptr', 'Pp3c12_9180' => 'ppa', 'Pp3c13_19770' => 'ppa', 'Pp3c14_22950' => 'ppa', 'Pp3c16_12160' => 'ppa', 'Pp3c27_7820' => 'ppa', 'Pp3c2_3490' => 'ppa', 'Pp3c3_23700' => 'ppa', 'Pp3c3_36520' => 'ppa', 'Pp3c4_15250' => 'ppa', 'PRCOL_00007002' => 'pco', 'Prupe.1G030600' => 'ppe', 'Prupe.1G030700' => 'ppe', 'Prupe.6G345200' => 'ppe', 'Prupe.8G230300' => 'ppe', 'Prupe.8G230500' => 'ppe', 'Psat3g059600' => 'psa', 'Psat5g200920' => 'psa', 'Psat6g056440' => 'psa', 'Psat6g057360' => 'psa', 'Psat6g134120' => 'psa', 'Psat6g134160' => 'psa', 'Psat7g008640' => 'psa', 'Psat7g185240' => 'psa', 'PSO017G1330' => 'pso', 'PSO063G6097' => 'pso', 'PSO170G0835' => 'pso', 'PSO170G2499' => 'pso', 'PSO210G5058' => 'pso', 'PSO210G6154' => 'pso', 'PSO585G0031' => 'pso', 'PSO832G0264' => 'pso', 'PSO832G4288' => 'pso', 'QL03p027355' => 'qlo', 'QL03p027430' => 'qlo', 'QL04p081380' => 'qlo', 'QL06p015642' => 'qlo', 'QL06p015650' => 'qlo', 'QL06p015686' => 'qlo', 'QL12p042927' => 'qlo', 'QL93p1863_0035' => 'qlo', 'RcHm_v2.0_Chr3g0450581' => 'rch', 'RcHm_v2.0_Chr4g0390371' => 'rch', 'RcHm_v2.0_Chr4g0390381' => 'rch', 'RcHm_v2.0_Chr4g0390491' => 'rch', 'RcHm_v2.0_Chr4g0390501' => 'rch', 'RcHm_v2.0_Chr6g0289231' => 'rch', 'Rhsim04G0190400' => 'rsi', 'Rhsim04G0190500' => 'rsi', 'Rhsim04G0190600' => 'rsi', 'Rhsim13G0031400' => 'rsi', 'Rhsim13G0165600' => 'rsi', 'RhsimUnG0114600' => 'rsi', 'RhsimUnG0114700' => 'rsi', 'Sabra02G0034800' => 'sbr', 'Sabra02G0035100' => 'sbr', 'Sabra05G0168600' => 'sbr', 'Sabra05G0168800' => 'sbr', 'Sabra08G0123700' => 'sbr', 'Sabra10G0031900' => 'sbr', 'Sabra13G0039000' => 'sbr', 'SalBow2G0782' => 'sbo', 'SalBow2G1403' => 'sbo', 'SalBow4G0074' => 'sbo', 'SalBow4G2635' => 'sbo', 'SalBow5G3010' => 'sbo', 'Sc05g0000870' => 'sci', 'Sc05g0000890' => 'sci', 'Sc13g0005000' => 'sci', 'Sc13g0005030' => 'sci', 'Sc19g0003790' => 'sci', 'Sc19g0003800' => 'sci', 'Sed0003467' => 'sed', 'Sed0009355' => 'sed', 'Sed0009894' => 'sed', 'Sed0011972' => 'sed', 'Sed0021483' => 'sed', 'Sed0021750' => 'sed', 'Sed0026279' => 'sed', 'SEGI_05312' => 'sgi', 'SEGI_10112' => 'sgi', 'SEGI_15835' => 'sgi', 'SEGI_30386' => 'sgi', 'SEGI_34122' => 'sgi', 'SEGI_35063' => 'sgi', 'SGA_v2.0_scaffold101G29794' => 'sas', 'SGA_v2.0_scaffold1G00573' => 'sas', 'SGA_v2.0_scaffold79G25637' => 'sas', 'SGA_v2.0_scaffold88G27283' => 'sas', 'SGA_v2.0_scaffold88G27285' => 'sas', 'SGA_v2.0_scaffold88G27331' => 'sas', 'SHI09937' => 'shi', 'SMO119G0302' => 'smo', 'SMO137G0231' => 'smo', 'SMO367G1151' => 'smo', 'Solyc02g082000.3' => 'sly', 'Solyc06g031670.3' => 'sly', 'Solyc06g053810.3' => 'sly', 'Solyc07g025457.1' => 'sly', 'Solyc08g059740.1' => 'sly', 'Solyc08g059750.3' => 'sly', 'Solyc09g083370.3' => 'sly', 'Solyc12g038950.3' => 'sly', 'Sopen02g026630' => 'spe', 'Sopen06g018930' => 'spe', 'Sopen06g018940' => 'spe', 'Sopen08g009460' => 'spe', 'Sopen09g032290' => 'spe', 'Sp1g03080' => 'spa', 'Sp1g03090' => 'spa', 'Sp1g05480' => 'spa', 'Sp2g07860' => 'spa', 'Sp2g08430' => 'spa', 'Sp2g08440' => 'spa', 'Sp2g26200' => 'spa', 'Sp4g13170' => 'spa', 'Sp6g33840' => 'spa', 'SpUn1204_0010' => 'spa', 'TAR365G0908' => 'tar', 'TAR381G1270' => 'tar', 'TAR381G1651' => 'tar', 'TAR625G1131' => 'tar', 'TAR633G0962' => 'tar', 'TAR633G1729' => 'tar', 'TAR633G1864' => 'tar', 'TAR636G0221' => 'tar', 'TAR636G0314' => 'tar', 'TAR636G3202' => 'tar', 'THA.LOC104800805' => 'tha', 'THA.LOC104801096' => 'tha', 'THA.LOC104801555' => 'tha', 'THA.LOC104808491' => 'tha', 'THA.LOC104808595' => 'tha', 'THA.LOC104815985' => 'tha', 'THA.LOC104822250' => 'tha', 'THA.LOC104826071' => 'tha', 'Thecc.01G265200' => 'tca', 'Thecc.01G265300' => 'tca', 'Thecc.01G265700' => 'tca', 'Thecc.03G109100' => 'tca', 'Thecc.04G245900' => 'tca', 'Thecc.04G246000' => 'tca', 'Thhalv10003334m.g' => 'esa', 'Thhalv10005508m.g' => 'esa', 'Thhalv10005643m.g' => 'esa', 'Thhalv10007316m.g' => 'esa', 'Thhalv10009006m.g' => 'esa', 'Thhalv10009309m.g' => 'esa', 'Thhalv10014917m.g' => 'esa', 'Thhalv10014919m.g' => 'esa', 'Thhalv10015393m.g' => 'esa', 'Thhalv10016515m.g' => 'esa', 'Thhalv10029242m.g' => 'esa', 'TPR.G16654' => 'tpr', 'TPR.G20589' => 'tpr', 'TPR.G23029' => 'tpr', 'TPR.G27731' => 'tpr', 'TPR.G28889' => 'tpr', 'TPR.G28899' => 'tpr', 'TPR.G30846' => 'tpr', 'TPR.G5452' => 'tpr', 'TPR.G5713' => 'tpr', 'TPR.G9046' => 'tpr', 'TPR.G9061' => 'tpr', 'TWI09G1075' => 'twi', 'TWI12G0806' => 'twi', 'TWI18G0108' => 'twi', 'TWI53G1361' => 'twi', 'TWI73G0185' => 'twi', 'TWI73G0427' => 'twi', 'unitig_37.g12001' => 'ugi', 'unitig_747.g21660' => 'ugi', 'unitig_748.g7232' => 'ugi', 'unitig_748.g7315' => 'ugi', 'unitig_85.g27262' => 'ugi', 'unitig_92.g28220' => 'ugi', 'vmacro02632' => 'vma', 'vmacro08410' => 'vma', 'vmacro08411' => 'vma', 'vmacro15407' => 'vma', 'VMungo0251G3619' => 'vmu', 'VMungo0720G1204' => 'vmu', 'VMungo0720G1918' => 'vmu', 'VMungo0720G2387' => 'vmu', 'VMungo0720G2961' => 'vmu', 'VMungo1215G2154' => 'vmu', 'VMungo1383G2411' => 'vmu', 'Zm00001eb051130' => 'zma', 'Zm00001eb116830' => 'zma', 'Zm00001eb116850' => 'zma', 'Zm00001eb151740' => 'zma', 'Zm00001eb292360' => 'zma', 'Zm00001eb301640' => 'zma' ), 'gf_id' => 'HOM05D000856', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000856' ), 'data_identifier' => 'HOM05D000856', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000856', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p00010' => 'bna', 'A03p04160' => 'bna', 'A03p17160' => 'bna', 'A04p23370' => 'bna', 'A05p14860' => 'bna', 'A08p37020' => 'bna', 'A09p08050' => 'bna', 'A09p66800' => 'bna', 'A09p67940' => 'bna', 'A10p02680' => 'bna', 'A10p05320' => 'bna', 'Aa31LG1G20560' => 'aar', 'Aa31LG1G20610' => 'aar', 'Aa31LG1G7810' => 'aar', 'Aa31LG5G3590' => 'aar', 'Aa31LG5G6140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3819' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4683' => 'aag', 'Actinidia04480' => 'ach', 'Actinidia05466' => 'ach', 'Actinidia08445' => 'ach', 'Actinidia21170' => 'ach', 'Actinidia24812' => 'ach', 'Actinidia24951' => 'ach', 'Actinidia40088' => 'ach', 'Ah.02g111660' => 'amhyb', 'Ah.11g048900' => 'amhyb', 'Ah.11g049910' => 'amhyb', 'AL1G13870' => 'aly', 'AL1G13880' => 'aly', 'AL1G16760' => 'aly', 'AL390U10020' => 'aly', 'AL4G25520' => 'aly', 'AL6G19890' => 'aly', 'AL6G19900' => 'aly', 'AL6G19910' => 'aly', 'AL8G40100' => 'aly', 'Aqoxy2G03562' => 'aox', 'Aqoxy5G00316' => 'aox', 'Aqoxy5G00926' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1628KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1H403S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2FU6SJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.882I6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8YRY2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YN1SN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AF70II' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZA8L1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F916KL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHRD8H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KTZ8QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S22EMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8M29T' => 'arhy', 'AT1G04270' => 'ath', 'AT1G04280' => 'ath', 'AT1G06750' => 'ath', 'AT1G33850' => 'ath', 'AT2G30630' => 'ath', 'AT5G09490' => 'ath', 'AT5G09500' => 'ath', 'AT5G09510' => 'ath', 'AT5G43640' => 'ath', 'AT5G63070' => 'ath', 'ATR0605G315' => 'atr', 'Atru.chr11.175' => 'acertr', 'Atru.chr11.653' => 'acertr', 'Atru.chr3.1616' => 'acertr', 'Atru.chr4.2230' => 'acertr', 'Atru.chr4.2232' => 'acertr', 'Atru.chr5.1598' => 'acertr', 'Atru.chr5.1600' => 'acertr', 'Atru.chr5.2188' => 'acertr', 'AUR62008326' => 'cqu', 'AUR62011922' => 'cqu', 'AUR62011924' => 'cqu', 'AUR62021771' => 'cqu', 'AUR62032237' => 'cqu', 'AUR62032240' => 'cqu', 'BcaB01g05572' => 'bca', 'BcaB02g10337' => 'bca', 'BcaB04g19944' => 'bca', 'BcaB05g21548' => 'bca', 'BcaB05g21549' => 'bca', 'BcaB05g23227' => 'bca', 'BcaB06g26256' => 'bca', 'BcaB06g26257' => 'bca', 'BcaB06g28379' => 'bca', 'BcaC02g11159' => 'bca', 'BcaC03g13258' => 'bca', 'BcaC03g13259' => 'bca', 'BcaC05g24456' => 'bca', 'BcaC05g24457' => 'bca', 'BcaC07g36922' => 'bca', 'BcaC07g36923' => 'bca', 'BcaC07g42050' => 'bca', 'BcaC07g42176' => 'bca', 'BcaC07g42195' => 'bca', 'BcaC07g42196' => 'bca', 'BcaNung06674' => 'bca', 'BolC2t06351H' => 'bol', 'BolC2t06352H' => 'bol', 'BolC3t12993H' => 'bol', 'BolC4t23525H' => 'bol', 'BolC4t27475H' => 'bol', 'BolC5t29025H' => 'bol', 'BolC5t29026H' => 'bol', 'BolC8t46898H' => 'bol', 'BolC8t46899H' => 'bol', 'BolC8t52630H' => 'bol', 'BolC8t52765H' => 'bol', 'BolC9t53824H' => 'bol', 'BraA03t09760Z' => 'bra', 'BraA03t10990Z' => 'bra', 'BraA05t20413Z' => 'bra', 'BraA08t35602Z' => 'bra', 'BraA09t36458Z' => 'bra', 'BraA09t42018Z' => 'bra', 'BraA09t42129Z' => 'bra', 'BraA10t42536Z' => 'bra', 'BraA10t42537Z' => 'bra', 'C01p10690' => 'bna', 'C02p03890' => 'bna', 'C02p03900' => 'bna', 'C03p04620' => 'bna', 'C04p19870' => 'bna', 'C04p59670' => 'bna', 'C05p02460' => 'bna', 'C05p02470' => 'bna', 'C08p00980' => 'bna', 'C08p00990' => 'bna', 'C08p51030' => 'bna', 'C08p52360' => 'bna', 'C09p09120' => 'bna', 'CAN.G19.15' => 'can', 'CAN.G251.10' => 'can', 'CAN.G251.9' => 'can', 'CAN.G398.24' => 'can', 'CAN.G410.32' => 'can', 'CAN.G881.2' => 'can', 'CANSAT01G3025' => 'cansat', 'CANSAT78G1211' => 'cansat', 'CANSAT78G1218' => 'cansat', 'CANSAT78G1521' => 'cansat', 'CANSAT78G1670' => 'cansat', 'CARHR003600' => 'chi', 'CARHR003610' => 'chi', 'CARHR006290' => 'chi', 'CARHR006430' => 'chi', 'CARHR124110' => 'chi', 'CARHR203870' => 'chi', 'CARHR203880' => 'chi', 'CARHR203890' => 'chi', 'CARHR276880' => 'chi', 'Carub.0001s0346' => 'cru', 'Carub.0001s0347' => 'cru', 'Carub.0001s0607' => 'cru', 'Carub.0003s2768' => 'cru', 'Carub.0003s2769' => 'cru', 'Carub.0004s1178' => 'cru', 'Carub.0006s0806' => 'cru', 'Carub.0006s0807' => 'cru', 'Carub.0006s0808' => 'cru', 'Carub.0008s0501' => 'cru', 'Carub.0008s2379' => 'cru', 'Ca_08655_v3' => 'car', 'Ca_08922_v3' => 'car', 'Ca_08923_v3' => 'car', 'Ca_09119_v3' => 'car', 'Ca_09703_v3' => 'car', 'Ca_09705_v3' => 'car', 'Ca_09835_v3' => 'car', 'Ca_26403_v3' => 'car', 'Ca_30719_v3' => 'car', 'CBR_g17958' => 'cbr', 'CBR_g40516' => 'cbr', 'Cc00_g05350' => 'ccan', 'Cc01_g18690' => 'ccan', 'Cc03_g04830' => 'ccan', 'Cc03_g04850' => 'ccan', 'CDE02G4469' => 'cde', 'CDE06G0883' => 'cde', 'CDE06G1295' => 'cde', 'CDE06G1390' => 'cde', 'CDE07G0584' => 'cde', 'CDE07G1084' => 'cde', 'CDE08G1259' => 'cde', 'Cfa002341' => 'cfa', 'Cfa024337' => 'cfa', 'Ciclev10004749m.g' => 'ccl', 'Ciclev10006127m.g' => 'ccl', 'Ciclev10019720m.g' => 'ccl', 'Ciclev10022652m.g' => 'ccl', 'CiPaw.01G190400' => 'cil', 'CiPaw.01G190500' => 'cil', 'CiPaw.02G116400' => 'cil', 'CiPaw.02G116500' => 'cil', 'CiPaw.04G183000' => 'cil', 'CiPaw.04G183300' => 'cil', 'ClCG05G004610' => 'cla', 'ClCG05G004620' => 'cla', 'ClCG06G006730' => 'cla', 'ClCG06G006740' => 'cla', 'ClCG11G003690' => 'cla', 'COL.COLO4_08276' => 'col', 'COL.COLO4_08277' => 'col', 'COL.COLO4_15787' => 'col', 'COL.COLO4_15789' => 'col', 'Cpa.g.c44815' => 'cpa', 'Cpa.g.sc52.144' => 'cpa', 'Cpa.g.sc58.46' => 'cpa', 'Cpa.g.sc58.47' => 'cpa', 'Cre08.g360900' => 'cre', 'CsaV3_2G013030' => 'csa', 'CsaV3_2G013050' => 'csa', 'CsaV3_2G015620' => 'csa', 'CsaV3_3G012590' => 'csa', 'CsaV3_3G012600' => 'csa', 'CSS0001641' => 'camsi', 'CSS0008310' => 'camsi', 'CSS0013011' => 'camsi', 'CSS0017147' => 'camsi', 'CSS0022970' => 'camsi', 'CSS0025655' => 'camsi', 'CSS0028665' => 'camsi', 'CSS0029117' => 'camsi', 'CSS0032024' => 'camsi', 'CSS0039681' => 'camsi', 'CSS0046516' => 'camsi', 'CSS0050307' => 'camsi', 'DCAR_005871' => 'dca', 'DCAR_007342' => 'dca', 'DCAR_024228' => 'dca', 'DCAR_027277' => 'dca', 'DCAR_030718' => 'dca', 'Dinv20287' => 'din', 'Dinv22461' => 'din', 'Dinv22464' => 'din', 'Dinv29912' => 'din', 'Dinv29913' => 'din', 'Dinv34580' => 'din', 'Dinv34582' => 'din', 'Dinv44632' => 'din', 'Duzib052G0266' => 'dzi', 'Duzib133G0907' => 'dzi', 'Duzib133G1034' => 'dzi', 'Duzib138G0207' => 'dzi', 'Duzib138G0491' => 'dzi', 'Duzib151G0812' => 'dzi', 'Duzib151G1166' => 'dzi', 'Duzib168G0192' => 'dzi', 'Duzib211G0077' => 'dzi', 'Duzib212G0429' => 'dzi', 'Duzib212G0472' => 'dzi', 'ECA233G2617' => 'eca', 'ECA236G4188' => 'eca', 'ECA240G0936' => 'eca', 'ECA240G1129' => 'eca', 'ECA247G0623' => 'eca', 'EL10Ac5g10451' => 'bvu', 'EL10Ac5g10453' => 'bvu', 'EL10Ac5g10894' => 'bvu', 'Eucgr.H00192' => 'egr', 'Eucgr.H00193' => 'egr', 'Eucgr.H00194' => 'egr', 'Eucgr.J01562' => 'egr', 'Eucgr.K03301' => 'egr', 'FAN02G0632' => 'fan', 'FAN05G5378' => 'fan', 'FAN09G3247' => 'fan', 'FAN12G0435' => 'fan', 'FAN12G2426' => 'fan', 'FAN14G1707' => 'fan', 'FAN14G4725' => 'fan', 'FAN15G2071' => 'fan', 'FAN17G3065' => 'fan', 'FAN19G1376' => 'fan', 'FAN20G0354' => 'fan', 'FAN20G2429' => 'fan', 'FAN20G2658' => 'fan', 'FAN24G2343' => 'fan', 'FAN27G2362' => 'fan', 'FAN28G1765' => 'fan', 'FvH4_1g16020' => 'fve', 'FvH4_2g04890' => 'fve', 'FvH4_2g22270' => 'fve', 'FvH4_4g02630' => 'fve', 'FvH4_4g02640' => 'fve', 'FvH4_6g02650' => 'fve', 'Glyma.02G140600' => 'gma', 'Glyma.03G159900' => 'gma', 'Glyma.05G234800' => 'gma', 'Glyma.07G269600' => 'gma', 'Glyma.08G042300' => 'gma', 'Glyma.10G033500' => 'gma', 'Glyma.10G185200' => 'gma', 'Glyma.17G004300' => 'gma', 'Glyma.19G161900' => 'gma', 'Glyma.20G205100' => 'gma', 'Glyma.20G205200' => 'gma', 'Gohir.A01G139101' => 'ghi', 'Gohir.A02G035600' => 'ghi', 'Gohir.A02G117901' => 'ghi', 'Gohir.A07G210100' => 'ghi', 'Gohir.A07G210200' => 'ghi', 'Gohir.A08G061100' => 'ghi', 'Gohir.A09G223000' => 'ghi', 'Gohir.A09G223100' => 'ghi', 'Gohir.A10G113900' => 'ghi', 'Gohir.A10G114000' => 'ghi', 'Gohir.D02G042300' => 'ghi', 'Gohir.D07G216100' => 'ghi', 'Gohir.D07G216200' => 'ghi', 'Gohir.D08G070400' => 'ghi', 'Gohir.D09G225000' => 'ghi', 'Gohir.D09G225100' => 'ghi', 'Gohir.D10G152300' => 'ghi', 'Gohir.D10G153200' => 'ghi', 'Gohir.D11G133701' => 'ghi', 'Gorai.004G074100' => 'gra', 'Gorai.005G046800' => 'gra', 'Gorai.006G246500' => 'gra', 'Gorai.006G246600' => 'gra', 'Gorai.007G142900' => 'gra', 'Gorai.011G171000' => 'gra', 'Gorai.011G171100' => 'gra', 'Gorai.013G104300' => 'gra', 'Gorai.013G104400' => 'gra', 'GSVIVG01000754001' => 'vvi', 'GSVIVG01000756001' => 'vvi', 'GSVIVG01010903001' => 'vvi', 'GSVIVG01017623001' => 'vvi', 'GSVIVG01018113001' => 'vvi', 'GSVIVG01018116001' => 'vvi', 'GSVIVG01018118001' => 'vvi', 'HanXRQChr03g0076211' => 'han', 'HanXRQChr03g0092431' => 'han', 'HanXRQChr03g0092441' => 'han', 'HanXRQChr03g0092591' => 'han', 'HanXRQChr03g0092671' => 'han', 'HanXRQChr03g0092681' => 'han', 'HanXRQChr03g0092691' => 'han', 'HanXRQChr03g0092701' => 'han', 'HanXRQChr03g0092721' => 'han', 'HanXRQChr03g0092731' => 'han', 'HanXRQChr04g0113681' => 'han', 'HanXRQChr10g0281371' => 'han', 'HanXRQChr11g0337141' => 'han', 'HanXRQChr13g0424521' => 'han', 'HanXRQChr13g0424531' => 'han', 'HanXRQChr13g0424541' => 'han', 'HanXRQChr16g0498221' => 'han', 'Haze_04377' => 'cav', 'Haze_11298' => 'cav', 'Haze_24547' => 'cav', 'Haze_24550' => 'cav', 'Haze_26587' => 'cav', 'Hma1.2p1_0650F.1_g195410' => 'hma', 'Hma1.2p1_0893F.1_g233470' => 'hma', 'HPP92_006508' => 'vpl', 'HPP92_024780' => 'vpl', 'Hund02688' => 'sun', 'Hund09380' => 'sun', 'Hund09381' => 'sun', 'Hund09832' => 'sun', 'Hund09833' => 'sun', 'Hund11351' => 'sun', 'Hund11513' => 'sun', 'Lalb_Chr06g0162591' => 'lal', 'Lalb_Chr06g0162601' => 'lal', 'Lalb_Chr06g0169321' => 'lal', 'Lalb_Chr09g0330951' => 'lal', 'Lalb_Chr16g0387631' => 'lal', 'Lalb_Chr21g0306241' => 'lal', 'Lalb_Chr25g0290051' => 'lal', 'Lalb_Chr25g0290061' => 'lal', 'Lalb_Chr25g0290071' => 'lal', 'Lj1g0003876' => 'lja', 'Lj1P1207T36' => 'lonja', 'Lj2C1156G12' => 'lonja', 'Lj3A793G39' => 'lonja', 'Lj3C580G2' => 'lonja', 'Lj3C780G2' => 'lonja', 'Lj3C780T4' => 'lonja', 'Lj3C793G9' => 'lonja', 'Lj4g0012960' => 'lja', 'Lj5g0021252' => 'lja', 'Lj5g0021484' => 'lja', 'Lj5g0024528' => 'lja', 'Lj6A399T12' => 'lonja', 'Lj6A656G65' => 'lonja', 'Lsat_1_v5_gn_3_125500' => 'lsa', 'Lsat_1_v5_gn_3_125540' => 'lsa', 'Lsat_1_v5_gn_5_72701' => 'lsa', 'Lsat_1_v5_gn_8_91560' => 'lsa', 'Lsat_1_v5_gn_9_9640' => 'lsa', 'Manes.01G200600' => 'mes', 'Manes.01G200700' => 'mes', 'Manes.03G168900' => 'mes', 'Manes.03G169000' => 'mes', 'Manes.05G085801' => 'mes', 'Manes.05G086200' => 'mes', 'Manes.15G036700' => 'mes', 'Manes.15G036900' => 'mes', 'Mapoly0004s0172' => 'mpo', 'Mapoly0023s0001' => 'mpo', 'Mapoly0142s0012' => 'mpo', 'MBI01_g32854_MAGBIO' => 'mbi', 'MBI11_g24427_MAGBIO' => 'mbi', 'MBI11_g47319_MAGBIO' => 'mbi', 'MCO01G433' => 'mco', 'MD00G1187800' => 'mdo', 'MD04G1226500' => 'mdo', 'MD05G1203900' => 'mdo', 'MD10G1191100' => 'mdo', 'MD12G1243500' => 'mdo', 'MD13G1207000' => 'mdo', 'MD13G1207100' => 'mdo', 'MD16G1208600' => 'mdo', 'Medtr1g050352' => 'mtr', 'Medtr1g070385' => 'mtr', 'Medtr1g070450' => 'mtr', 'Medtr1g075200' => 'mtr', 'Medtr1g075250' => 'mtr', 'Medtr1g075260' => 'mtr', 'Medtr1g475250' => 'mtr', 'Medtr4g075450' => 'mtr', 'Medtr7g096300' => 'mtr', 'Medtr8g105110' => 'mtr', 'MELO3C006470.2' => 'cme', 'MELO3C006471.2' => 'cme', 'MELO3C020772.2' => 'cme', 'MELO3C026780.2' => 'cme', 'MELO3C026781.2' => 'cme', 'Migut.D00390' => 'egut', 'Migut.G00435' => 'egut', 'Migut.G00436' => 'egut', 'Migut.G00718' => 'egut', 'MSTRG.21891' => 'ama', 'MSTRG.26910' => 'ama', 'MSTRG.4099' => 'ama', 'MSTRG.9925' => 'ama', 'Nitab4.5_0000165g0010' => 'nta', 'Nitab4.5_0000209g0180' => 'nta', 'Nitab4.5_0000244g0440' => 'nta', 'Nitab4.5_0000525g0220' => 'nta', 'Nitab4.5_0001597g0020' => 'nta', 'Nitab4.5_0001878g0040' => 'nta', 'Nitab4.5_0001878g0060' => 'nta', 'Nitab4.5_0002838g0100' => 'nta', 'Nitab4.5_0002838g0120' => 'nta', 'Nitab4.5_0004798g0030' => 'nta', 'Nitab4.5_0005420g0010' => 'nta', 'Nitab4.5_0005507g0010' => 'nta', 'Nitab4.5_0005574g0020' => 'nta', 'Nitab4.5_0005838g0010' => 'nta', 'Nitab4.5_0010580g0020' => 'nta', 'Nn1g02599' => 'nnu', 'Nn1g02608' => 'nnu', 'Nn3g17742' => 'nnu', 'Nn3g19534' => 'nnu', 'Nn3g19535' => 'nnu', 'Oeu008790.1' => 'oeu', 'Oeu008792.1' => 'oeu', 'Oeu032590.1' => 'oeu', 'Oeu035349.1' => 'oeu', 'Oeu049791.1' => 'oeu', 'Os01g0774500' => 'osa', 'Os03g0628800' => 'osa', 'Os03g0798600' => 'osa', 'Os05g0508800' => 'osa', 'Peaxi162Scf00036g02018' => 'pax', 'Peaxi162Scf00578g00032' => 'pax', 'Peaxi162Scf00578g00317' => 'pax', 'Peaxi162Scf00785g00114' => 'pax', 'Peaxi162Scf00813g00119' => 'pax', 'Peaxi162Scf00906g00227' => 'pax', 'PGR004G0875' => 'pgr', 'PGR004G2424' => 'pgr', 'PGR031G1239' => 'pgr', 'PGR031G2474' => 'pgr', 'PGR044G0423' => 'pgr', 'PGSC0003DMG400001128' => 'stu', 'PGSC0003DMG400007336' => 'stu', 'PGSC0003DMG400016318' => 'stu', 'PGSC0003DMG400016319' => 'stu', 'PGSC0003DMG400018074' => 'stu', 'Phvul.001G157700' => 'pvu', 'Phvul.002G148550' => 'pvu', 'Phvul.002G320200' => 'pvu', 'Phvul.003G089200' => 'pvu', 'Phvul.007G126000' => 'pvu', 'Phvul.007G126100' => 'pvu', 'Phvul.007G178000' => 'pvu', 'Phvul.007G178200' => 'pvu', 'Potri.002G043000' => 'ptr', 'Potri.002G043200' => 'ptr', 'Potri.003G123750' => 'ptr', 'Potri.005G055401' => 'ptr', 'Potri.005G219700' => 'ptr', 'Potri.005G220000' => 'ptr', 'Potri.008G161901' => 'ptr', 'Potri.008G162000' => 'ptr', 'Potri.008G162400' => 'ptr', 'Potri.010G076900' => 'ptr', 'Pp3c12_9180' => 'ppa', 'Pp3c13_19770' => 'ppa', 'Pp3c14_22950' => 'ppa', 'Pp3c16_12160' => 'ppa', 'Pp3c27_7820' => 'ppa', 'Pp3c2_3490' => 'ppa', 'Pp3c3_23700' => 'ppa', 'Pp3c3_36520' => 'ppa', 'Pp3c4_15250' => 'ppa', 'PRCOL_00007002' => 'pco', 'Prupe.1G030600' => 'ppe', 'Prupe.1G030700' => 'ppe', 'Prupe.6G345200' => 'ppe', 'Prupe.8G230300' => 'ppe', 'Prupe.8G230500' => 'ppe', 'Psat3g059600' => 'psa', 'Psat5g200920' => 'psa', 'Psat6g056440' => 'psa', 'Psat6g057360' => 'psa', 'Psat6g134120' => 'psa', 'Psat6g134160' => 'psa', 'Psat7g008640' => 'psa', 'Psat7g185240' => 'psa', 'PSO017G1330' => 'pso', 'PSO063G6097' => 'pso', 'PSO170G0835' => 'pso', 'PSO170G2499' => 'pso', 'PSO210G5058' => 'pso', 'PSO210G6154' => 'pso', 'PSO585G0031' => 'pso', 'PSO832G0264' => 'pso', 'PSO832G4288' => 'pso', 'QL03p027355' => 'qlo', 'QL03p027430' => 'qlo', 'QL04p081380' => 'qlo', 'QL06p015642' => 'qlo', 'QL06p015650' => 'qlo', 'QL06p015686' => 'qlo', 'QL12p042927' => 'qlo', 'QL93p1863_0035' => 'qlo', 'RcHm_v2.0_Chr3g0450581' => 'rch', 'RcHm_v2.0_Chr4g0390371' => 'rch', 'RcHm_v2.0_Chr4g0390381' => 'rch', 'RcHm_v2.0_Chr4g0390491' => 'rch', 'RcHm_v2.0_Chr4g0390501' => 'rch', 'RcHm_v2.0_Chr6g0289231' => 'rch', 'Rhsim04G0190400' => 'rsi', 'Rhsim04G0190500' => 'rsi', 'Rhsim04G0190600' => 'rsi', 'Rhsim13G0031400' => 'rsi', 'Rhsim13G0165600' => 'rsi', 'RhsimUnG0114600' => 'rsi', 'RhsimUnG0114700' => 'rsi', 'Sabra02G0034800' => 'sbr', 'Sabra02G0035100' => 'sbr', 'Sabra05G0168600' => 'sbr', 'Sabra05G0168800' => 'sbr', 'Sabra08G0123700' => 'sbr', 'Sabra10G0031900' => 'sbr', 'Sabra13G0039000' => 'sbr', 'SalBow2G0782' => 'sbo', 'SalBow2G1403' => 'sbo', 'SalBow4G0074' => 'sbo', 'SalBow4G2635' => 'sbo', 'SalBow5G3010' => 'sbo', 'Sc05g0000870' => 'sci', 'Sc05g0000890' => 'sci', 'Sc13g0005000' => 'sci', 'Sc13g0005030' => 'sci', 'Sc19g0003790' => 'sci', 'Sc19g0003800' => 'sci', 'Sed0003467' => 'sed', 'Sed0009355' => 'sed', 'Sed0009894' => 'sed', 'Sed0011972' => 'sed', 'Sed0021483' => 'sed', 'Sed0021750' => 'sed', 'Sed0026279' => 'sed', 'SEGI_05312' => 'sgi', 'SEGI_10112' => 'sgi', 'SEGI_15835' => 'sgi', 'SEGI_30386' => 'sgi', 'SEGI_34122' => 'sgi', 'SEGI_35063' => 'sgi', 'SGA_v2.0_scaffold101G29794' => 'sas', 'SGA_v2.0_scaffold1G00573' => 'sas', 'SGA_v2.0_scaffold79G25637' => 'sas', 'SGA_v2.0_scaffold88G27283' => 'sas', 'SGA_v2.0_scaffold88G27285' => 'sas', 'SGA_v2.0_scaffold88G27331' => 'sas', 'SHI09937' => 'shi', 'SMO119G0302' => 'smo', 'SMO137G0231' => 'smo', 'SMO367G1151' => 'smo', 'Solyc02g082000.3' => 'sly', 'Solyc06g031670.3' => 'sly', 'Solyc06g053810.3' => 'sly', 'Solyc07g025457.1' => 'sly', 'Solyc08g059740.1' => 'sly', 'Solyc08g059750.3' => 'sly', 'Solyc09g083370.3' => 'sly', 'Solyc12g038950.3' => 'sly', 'Sopen02g026630' => 'spe', 'Sopen06g018930' => 'spe', 'Sopen06g018940' => 'spe', 'Sopen08g009460' => 'spe', 'Sopen09g032290' => 'spe', 'Sp1g03080' => 'spa', 'Sp1g03090' => 'spa', 'Sp1g05480' => 'spa', 'Sp2g07860' => 'spa', 'Sp2g08430' => 'spa', 'Sp2g08440' => 'spa', 'Sp2g26200' => 'spa', 'Sp4g13170' => 'spa', 'Sp6g33840' => 'spa', 'SpUn1204_0010' => 'spa', 'TAR365G0908' => 'tar', 'TAR381G1270' => 'tar', 'TAR381G1651' => 'tar', 'TAR625G1131' => 'tar', 'TAR633G0962' => 'tar', 'TAR633G1729' => 'tar', 'TAR633G1864' => 'tar', 'TAR636G0221' => 'tar', 'TAR636G0314' => 'tar', 'TAR636G3202' => 'tar', 'THA.LOC104800805' => 'tha', 'THA.LOC104801096' => 'tha', 'THA.LOC104801555' => 'tha', 'THA.LOC104808491' => 'tha', 'THA.LOC104808595' => 'tha', 'THA.LOC104815985' => 'tha', 'THA.LOC104822250' => 'tha', 'THA.LOC104826071' => 'tha', 'Thecc.01G265200' => 'tca', 'Thecc.01G265300' => 'tca', 'Thecc.01G265700' => 'tca', 'Thecc.03G109100' => 'tca', 'Thecc.04G245900' => 'tca', 'Thecc.04G246000' => 'tca', 'Thhalv10003334m.g' => 'esa', 'Thhalv10005508m.g' => 'esa', 'Thhalv10005643m.g' => 'esa', 'Thhalv10007316m.g' => 'esa', 'Thhalv10009006m.g' => 'esa', 'Thhalv10009309m.g' => 'esa', 'Thhalv10014917m.g' => 'esa', 'Thhalv10014919m.g' => 'esa', 'Thhalv10015393m.g' => 'esa', 'Thhalv10016515m.g' => 'esa', 'Thhalv10029242m.g' => 'esa', 'TPR.G16654' => 'tpr', 'TPR.G20589' => 'tpr', 'TPR.G23029' => 'tpr', 'TPR.G27731' => 'tpr', 'TPR.G28889' => 'tpr', 'TPR.G28899' => 'tpr', 'TPR.G30846' => 'tpr', 'TPR.G5452' => 'tpr', 'TPR.G5713' => 'tpr', 'TPR.G9046' => 'tpr', 'TPR.G9061' => 'tpr', 'TWI09G1075' => 'twi', 'TWI12G0806' => 'twi', 'TWI18G0108' => 'twi', 'TWI53G1361' => 'twi', 'TWI73G0185' => 'twi', 'TWI73G0427' => 'twi', 'unitig_37.g12001' => 'ugi', 'unitig_747.g21660' => 'ugi', 'unitig_748.g7232' => 'ugi', 'unitig_748.g7315' => 'ugi', 'unitig_85.g27262' => 'ugi', 'unitig_92.g28220' => 'ugi', 'vmacro02632' => 'vma', 'vmacro08410' => 'vma', 'vmacro08411' => 'vma', 'vmacro15407' => 'vma', 'VMungo0251G3619' => 'vmu', 'VMungo0720G1204' => 'vmu', 'VMungo0720G1918' => 'vmu', 'VMungo0720G2387' => 'vmu', 'VMungo0720G2961' => 'vmu', 'VMungo1215G2154' => 'vmu', 'VMungo1383G2411' => 'vmu', 'Zm00001eb051130' => 'zma', 'Zm00001eb116830' => 'zma', 'Zm00001eb116850' => 'zma', 'Zm00001eb151740' => 'zma', 'Zm00001eb292360' => 'zma', 'Zm00001eb301640' => 'zma' ) $gf_id = 'HOM05D000856' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000856' ) $data_identifier = 'HOM05D000856' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 13, 'ath' => (int) 10, 'atr' => (int) 1, 'acertr' => (int) 8, 'cqu' => (int) 6, 'bca' => (int) 21, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 11, 'car' => (int) 9, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 8, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 5, 'fan' => (int) 16, 'fve' => (int) 6, 'gma' => (int) 11, 'ghi' => (int) 19, 'gra' => (int) 9, 'vvi' => (int) 7, 'han' => (int) 17, 'cav' => (int) 5, 'hma' => (int) 2, 'vpl' => (int) 2, 'sun' => (int) 7, 'lal' => (int) 9, 'lja' => (int) 5, 'lonja' => (int) 9, 'lsa' => (int) 5, 'mes' => (int) 8, 'mpo' => (int) 3, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 10, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 15, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 9, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 9, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 6, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 5, 'spa' => (int) 10, 'tar' => (int) 10, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 11, 'tpr' => (int) 11, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 4, 'vmu' => (int) 7, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb301640' $species_info = array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ) $local_species = 'gma' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000856', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p00010' => 'bna', 'A03p04160' => 'bna', 'A03p17160' => 'bna', 'A04p23370' => 'bna', 'A05p14860' => 'bna', 'A08p37020' => 'bna', 'A09p08050' => 'bna', 'A09p66800' => 'bna', 'A09p67940' => 'bna', 'A10p02680' => 'bna', 'A10p05320' => 'bna', 'Aa31LG1G20560' => 'aar', 'Aa31LG1G20610' => 'aar', 'Aa31LG1G7810' => 'aar', 'Aa31LG5G3590' => 'aar', 'Aa31LG5G6140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3819' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4683' => 'aag', 'Actinidia04480' => 'ach', 'Actinidia05466' => 'ach', 'Actinidia08445' => 'ach', 'Actinidia21170' => 'ach', 'Actinidia24812' => 'ach', 'Actinidia24951' => 'ach', 'Actinidia40088' => 'ach', 'Ah.02g111660' => 'amhyb', 'Ah.11g048900' => 'amhyb', 'Ah.11g049910' => 'amhyb', 'AL1G13870' => 'aly', 'AL1G13880' => 'aly', 'AL1G16760' => 'aly', 'AL390U10020' => 'aly', 'AL4G25520' => 'aly', 'AL6G19890' => 'aly', 'AL6G19900' => 'aly', 'AL6G19910' => 'aly', 'AL8G40100' => 'aly', 'Aqoxy2G03562' => 'aox', 'Aqoxy5G00316' => 'aox', 'Aqoxy5G00926' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1628KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1H403S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2FU6SJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.882I6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8YRY2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YN1SN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AF70II' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZA8L1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F916KL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHRD8H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KTZ8QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S22EMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8M29T' => 'arhy', 'AT1G04270' => 'ath', 'AT1G04280' => 'ath', 'AT1G06750' => 'ath', 'AT1G33850' => 'ath', 'AT2G30630' => 'ath', 'AT5G09490' => 'ath', 'AT5G09500' => 'ath', 'AT5G09510' => 'ath', 'AT5G43640' => 'ath', 'AT5G63070' => 'ath', 'ATR0605G315' => 'atr', 'Atru.chr11.175' => 'acertr', 'Atru.chr11.653' => 'acertr', 'Atru.chr3.1616' => 'acertr', 'Atru.chr4.2230' => 'acertr', 'Atru.chr4.2232' => 'acertr', 'Atru.chr5.1598' => 'acertr', 'Atru.chr5.1600' => 'acertr', 'Atru.chr5.2188' => 'acertr', 'AUR62008326' => 'cqu', 'AUR62011922' => 'cqu', 'AUR62011924' => 'cqu', 'AUR62021771' => 'cqu', 'AUR62032237' => 'cqu', 'AUR62032240' => 'cqu', 'BcaB01g05572' => 'bca', 'BcaB02g10337' => 'bca', 'BcaB04g19944' => 'bca', 'BcaB05g21548' => 'bca', 'BcaB05g21549' => 'bca', 'BcaB05g23227' => 'bca', 'BcaB06g26256' => 'bca', 'BcaB06g26257' => 'bca', 'BcaB06g28379' => 'bca', 'BcaC02g11159' => 'bca', 'BcaC03g13258' => 'bca', 'BcaC03g13259' => 'bca', 'BcaC05g24456' => 'bca', 'BcaC05g24457' => 'bca', 'BcaC07g36922' => 'bca', 'BcaC07g36923' => 'bca', 'BcaC07g42050' => 'bca', 'BcaC07g42176' => 'bca', 'BcaC07g42195' => 'bca', 'BcaC07g42196' => 'bca', 'BcaNung06674' => 'bca', 'BolC2t06351H' => 'bol', 'BolC2t06352H' => 'bol', 'BolC3t12993H' => 'bol', 'BolC4t23525H' => 'bol', 'BolC4t27475H' => 'bol', 'BolC5t29025H' => 'bol', 'BolC5t29026H' => 'bol', 'BolC8t46898H' => 'bol', 'BolC8t46899H' => 'bol', 'BolC8t52630H' => 'bol', 'BolC8t52765H' => 'bol', 'BolC9t53824H' => 'bol', 'BraA03t09760Z' => 'bra', 'BraA03t10990Z' => 'bra', 'BraA05t20413Z' => 'bra', 'BraA08t35602Z' => 'bra', 'BraA09t36458Z' => 'bra', 'BraA09t42018Z' => 'bra', 'BraA09t42129Z' => 'bra', 'BraA10t42536Z' => 'bra', 'BraA10t42537Z' => 'bra', 'C01p10690' => 'bna', 'C02p03890' => 'bna', 'C02p03900' => 'bna', 'C03p04620' => 'bna', 'C04p19870' => 'bna', 'C04p59670' => 'bna', 'C05p02460' => 'bna', 'C05p02470' => 'bna', 'C08p00980' => 'bna', 'C08p00990' => 'bna', 'C08p51030' => 'bna', 'C08p52360' => 'bna', 'C09p09120' => 'bna', 'CAN.G19.15' => 'can', 'CAN.G251.10' => 'can', 'CAN.G251.9' => 'can', 'CAN.G398.24' => 'can', 'CAN.G410.32' => 'can', 'CAN.G881.2' => 'can', 'CANSAT01G3025' => 'cansat', 'CANSAT78G1211' => 'cansat', 'CANSAT78G1218' => 'cansat', 'CANSAT78G1521' => 'cansat', 'CANSAT78G1670' => 'cansat', 'CARHR003600' => 'chi', 'CARHR003610' => 'chi', 'CARHR006290' => 'chi', 'CARHR006430' => 'chi', 'CARHR124110' => 'chi', 'CARHR203870' => 'chi', 'CARHR203880' => 'chi', 'CARHR203890' => 'chi', 'CARHR276880' => 'chi', 'Carub.0001s0346' => 'cru', 'Carub.0001s0347' => 'cru', 'Carub.0001s0607' => 'cru', 'Carub.0003s2768' => 'cru', 'Carub.0003s2769' => 'cru', 'Carub.0004s1178' => 'cru', 'Carub.0006s0806' => 'cru', 'Carub.0006s0807' => 'cru', 'Carub.0006s0808' => 'cru', 'Carub.0008s0501' => 'cru', 'Carub.0008s2379' => 'cru', 'Ca_08655_v3' => 'car', 'Ca_08922_v3' => 'car', 'Ca_08923_v3' => 'car', 'Ca_09119_v3' => 'car', 'Ca_09703_v3' => 'car', 'Ca_09705_v3' => 'car', 'Ca_09835_v3' => 'car', 'Ca_26403_v3' => 'car', 'Ca_30719_v3' => 'car', 'CBR_g17958' => 'cbr', 'CBR_g40516' => 'cbr', 'Cc00_g05350' => 'ccan', 'Cc01_g18690' => 'ccan', 'Cc03_g04830' => 'ccan', 'Cc03_g04850' => 'ccan', 'CDE02G4469' => 'cde', 'CDE06G0883' => 'cde', 'CDE06G1295' => 'cde', 'CDE06G1390' => 'cde', 'CDE07G0584' => 'cde', 'CDE07G1084' => 'cde', 'CDE08G1259' => 'cde', 'Cfa002341' => 'cfa', 'Cfa024337' => 'cfa', 'Ciclev10004749m.g' => 'ccl', 'Ciclev10006127m.g' => 'ccl', 'Ciclev10019720m.g' => 'ccl', 'Ciclev10022652m.g' => 'ccl', 'CiPaw.01G190400' => 'cil', 'CiPaw.01G190500' => 'cil', 'CiPaw.02G116400' => 'cil', 'CiPaw.02G116500' => 'cil', 'CiPaw.04G183000' => 'cil', 'CiPaw.04G183300' => 'cil', 'ClCG05G004610' => 'cla', 'ClCG05G004620' => 'cla', 'ClCG06G006730' => 'cla', 'ClCG06G006740' => 'cla', 'ClCG11G003690' => 'cla', 'COL.COLO4_08276' => 'col', 'COL.COLO4_08277' => 'col', 'COL.COLO4_15787' => 'col', 'COL.COLO4_15789' => 'col', 'Cpa.g.c44815' => 'cpa', 'Cpa.g.sc52.144' => 'cpa', 'Cpa.g.sc58.46' => 'cpa', 'Cpa.g.sc58.47' => 'cpa', 'Cre08.g360900' => 'cre', 'CsaV3_2G013030' => 'csa', 'CsaV3_2G013050' => 'csa', 'CsaV3_2G015620' => 'csa', 'CsaV3_3G012590' => 'csa', 'CsaV3_3G012600' => 'csa', 'CSS0001641' => 'camsi', 'CSS0008310' => 'camsi', 'CSS0013011' => 'camsi', 'CSS0017147' => 'camsi', 'CSS0022970' => 'camsi', 'CSS0025655' => 'camsi', 'CSS0028665' => 'camsi', 'CSS0029117' => 'camsi', 'CSS0032024' => 'camsi', 'CSS0039681' => 'camsi', 'CSS0046516' => 'camsi', 'CSS0050307' => 'camsi', 'DCAR_005871' => 'dca', 'DCAR_007342' => 'dca', 'DCAR_024228' => 'dca', 'DCAR_027277' => 'dca', 'DCAR_030718' => 'dca', 'Dinv20287' => 'din', 'Dinv22461' => 'din', 'Dinv22464' => 'din', 'Dinv29912' => 'din', 'Dinv29913' => 'din', 'Dinv34580' => 'din', 'Dinv34582' => 'din', 'Dinv44632' => 'din', 'Duzib052G0266' => 'dzi', 'Duzib133G0907' => 'dzi', 'Duzib133G1034' => 'dzi', 'Duzib138G0207' => 'dzi', 'Duzib138G0491' => 'dzi', 'Duzib151G0812' => 'dzi', 'Duzib151G1166' => 'dzi', 'Duzib168G0192' => 'dzi', 'Duzib211G0077' => 'dzi', 'Duzib212G0429' => 'dzi', 'Duzib212G0472' => 'dzi', 'ECA233G2617' => 'eca', 'ECA236G4188' => 'eca', 'ECA240G0936' => 'eca', 'ECA240G1129' => 'eca', 'ECA247G0623' => 'eca', 'EL10Ac5g10451' => 'bvu', 'EL10Ac5g10453' => 'bvu', 'EL10Ac5g10894' => 'bvu', 'Eucgr.H00192' => 'egr', 'Eucgr.H00193' => 'egr', 'Eucgr.H00194' => 'egr', 'Eucgr.J01562' => 'egr', 'Eucgr.K03301' => 'egr', 'FAN02G0632' => 'fan', 'FAN05G5378' => 'fan', 'FAN09G3247' => 'fan', 'FAN12G0435' => 'fan', 'FAN12G2426' => 'fan', 'FAN14G1707' => 'fan', 'FAN14G4725' => 'fan', 'FAN15G2071' => 'fan', 'FAN17G3065' => 'fan', 'FAN19G1376' => 'fan', 'FAN20G0354' => 'fan', 'FAN20G2429' => 'fan', 'FAN20G2658' => 'fan', 'FAN24G2343' => 'fan', 'FAN27G2362' => 'fan', 'FAN28G1765' => 'fan', 'FvH4_1g16020' => 'fve', 'FvH4_2g04890' => 'fve', 'FvH4_2g22270' => 'fve', 'FvH4_4g02630' => 'fve', 'FvH4_4g02640' => 'fve', 'FvH4_6g02650' => 'fve', 'Glyma.02G140600' => 'gma', 'Glyma.03G159900' => 'gma', 'Glyma.05G234800' => 'gma', 'Glyma.07G269600' => 'gma', 'Glyma.08G042300' => 'gma', 'Glyma.10G033500' => 'gma', 'Glyma.10G185200' => 'gma', 'Glyma.17G004300' => 'gma', 'Glyma.19G161900' => 'gma', 'Glyma.20G205100' => 'gma', 'Glyma.20G205200' => 'gma', 'Gohir.A01G139101' => 'ghi', 'Gohir.A02G035600' => 'ghi', 'Gohir.A02G117901' => 'ghi', 'Gohir.A07G210100' => 'ghi', 'Gohir.A07G210200' => 'ghi', 'Gohir.A08G061100' => 'ghi', 'Gohir.A09G223000' => 'ghi', 'Gohir.A09G223100' => 'ghi', 'Gohir.A10G113900' => 'ghi', 'Gohir.A10G114000' => 'ghi', 'Gohir.D02G042300' => 'ghi', 'Gohir.D07G216100' => 'ghi', 'Gohir.D07G216200' => 'ghi', 'Gohir.D08G070400' => 'ghi', 'Gohir.D09G225000' => 'ghi', 'Gohir.D09G225100' => 'ghi', 'Gohir.D10G152300' => 'ghi', 'Gohir.D10G153200' => 'ghi', 'Gohir.D11G133701' => 'ghi', 'Gorai.004G074100' => 'gra', 'Gorai.005G046800' => 'gra', 'Gorai.006G246500' => 'gra', 'Gorai.006G246600' => 'gra', 'Gorai.007G142900' => 'gra', 'Gorai.011G171000' => 'gra', 'Gorai.011G171100' => 'gra', 'Gorai.013G104300' => 'gra', 'Gorai.013G104400' => 'gra', 'GSVIVG01000754001' => 'vvi', 'GSVIVG01000756001' => 'vvi', 'GSVIVG01010903001' => 'vvi', 'GSVIVG01017623001' => 'vvi', 'GSVIVG01018113001' => 'vvi', 'GSVIVG01018116001' => 'vvi', 'GSVIVG01018118001' => 'vvi', 'HanXRQChr03g0076211' => 'han', 'HanXRQChr03g0092431' => 'han', 'HanXRQChr03g0092441' => 'han', 'HanXRQChr03g0092591' => 'han', 'HanXRQChr03g0092671' => 'han', 'HanXRQChr03g0092681' => 'han', 'HanXRQChr03g0092691' => 'han', 'HanXRQChr03g0092701' => 'han', 'HanXRQChr03g0092721' => 'han', 'HanXRQChr03g0092731' => 'han', 'HanXRQChr04g0113681' => 'han', 'HanXRQChr10g0281371' => 'han', 'HanXRQChr11g0337141' => 'han', 'HanXRQChr13g0424521' => 'han', 'HanXRQChr13g0424531' => 'han', 'HanXRQChr13g0424541' => 'han', 'HanXRQChr16g0498221' => 'han', 'Haze_04377' => 'cav', 'Haze_11298' => 'cav', 'Haze_24547' => 'cav', 'Haze_24550' => 'cav', 'Haze_26587' => 'cav', 'Hma1.2p1_0650F.1_g195410' => 'hma', 'Hma1.2p1_0893F.1_g233470' => 'hma', 'HPP92_006508' => 'vpl', 'HPP92_024780' => 'vpl', 'Hund02688' => 'sun', 'Hund09380' => 'sun', 'Hund09381' => 'sun', 'Hund09832' => 'sun', 'Hund09833' => 'sun', 'Hund11351' => 'sun', 'Hund11513' => 'sun', 'Lalb_Chr06g0162591' => 'lal', 'Lalb_Chr06g0162601' => 'lal', 'Lalb_Chr06g0169321' => 'lal', 'Lalb_Chr09g0330951' => 'lal', 'Lalb_Chr16g0387631' => 'lal', 'Lalb_Chr21g0306241' => 'lal', 'Lalb_Chr25g0290051' => 'lal', 'Lalb_Chr25g0290061' => 'lal', 'Lalb_Chr25g0290071' => 'lal', 'Lj1g0003876' => 'lja', 'Lj1P1207T36' => 'lonja', 'Lj2C1156G12' => 'lonja', 'Lj3A793G39' => 'lonja', 'Lj3C580G2' => 'lonja', 'Lj3C780G2' => 'lonja', 'Lj3C780T4' => 'lonja', 'Lj3C793G9' => 'lonja', 'Lj4g0012960' => 'lja', 'Lj5g0021252' => 'lja', 'Lj5g0021484' => 'lja', 'Lj5g0024528' => 'lja', 'Lj6A399T12' => 'lonja', 'Lj6A656G65' => 'lonja', 'Lsat_1_v5_gn_3_125500' => 'lsa', 'Lsat_1_v5_gn_3_125540' => 'lsa', 'Lsat_1_v5_gn_5_72701' => 'lsa', 'Lsat_1_v5_gn_8_91560' => 'lsa', 'Lsat_1_v5_gn_9_9640' => 'lsa', 'Manes.01G200600' => 'mes', 'Manes.01G200700' => 'mes', 'Manes.03G168900' => 'mes', 'Manes.03G169000' => 'mes', 'Manes.05G085801' => 'mes', 'Manes.05G086200' => 'mes', 'Manes.15G036700' => 'mes', 'Manes.15G036900' => 'mes', 'Mapoly0004s0172' => 'mpo', 'Mapoly0023s0001' => 'mpo', 'Mapoly0142s0012' => 'mpo', 'MBI01_g32854_MAGBIO' => 'mbi', 'MBI11_g24427_MAGBIO' => 'mbi', 'MBI11_g47319_MAGBIO' => 'mbi', 'MCO01G433' => 'mco', 'MD00G1187800' => 'mdo', 'MD04G1226500' => 'mdo', 'MD05G1203900' => 'mdo', 'MD10G1191100' => 'mdo', 'MD12G1243500' => 'mdo', 'MD13G1207000' => 'mdo', 'MD13G1207100' => 'mdo', 'MD16G1208600' => 'mdo', 'Medtr1g050352' => 'mtr', 'Medtr1g070385' => 'mtr', 'Medtr1g070450' => 'mtr', 'Medtr1g075200' => 'mtr', 'Medtr1g075250' => 'mtr', 'Medtr1g075260' => 'mtr', 'Medtr1g475250' => 'mtr', 'Medtr4g075450' => 'mtr', 'Medtr7g096300' => 'mtr', 'Medtr8g105110' => 'mtr', 'MELO3C006470.2' => 'cme', 'MELO3C006471.2' => 'cme', 'MELO3C020772.2' => 'cme', 'MELO3C026780.2' => 'cme', 'MELO3C026781.2' => 'cme', 'Migut.D00390' => 'egut', 'Migut.G00435' => 'egut', 'Migut.G00436' => 'egut', 'Migut.G00718' => 'egut', 'MSTRG.21891' => 'ama', 'MSTRG.26910' => 'ama', 'MSTRG.4099' => 'ama', 'MSTRG.9925' => 'ama', 'Nitab4.5_0000165g0010' => 'nta', 'Nitab4.5_0000209g0180' => 'nta', 'Nitab4.5_0000244g0440' => 'nta', 'Nitab4.5_0000525g0220' => 'nta', 'Nitab4.5_0001597g0020' => 'nta', 'Nitab4.5_0001878g0040' => 'nta', 'Nitab4.5_0001878g0060' => 'nta', 'Nitab4.5_0002838g0100' => 'nta', 'Nitab4.5_0002838g0120' => 'nta', 'Nitab4.5_0004798g0030' => 'nta', 'Nitab4.5_0005420g0010' => 'nta', 'Nitab4.5_0005507g0010' => 'nta', 'Nitab4.5_0005574g0020' => 'nta', 'Nitab4.5_0005838g0010' => 'nta', 'Nitab4.5_0010580g0020' => 'nta', 'Nn1g02599' => 'nnu', 'Nn1g02608' => 'nnu', 'Nn3g17742' => 'nnu', 'Nn3g19534' => 'nnu', 'Nn3g19535' => 'nnu', 'Oeu008790.1' => 'oeu', 'Oeu008792.1' => 'oeu', 'Oeu032590.1' => 'oeu', 'Oeu035349.1' => 'oeu', 'Oeu049791.1' => 'oeu', 'Os01g0774500' => 'osa', 'Os03g0628800' => 'osa', 'Os03g0798600' => 'osa', 'Os05g0508800' => 'osa', 'Peaxi162Scf00036g02018' => 'pax', 'Peaxi162Scf00578g00032' => 'pax', 'Peaxi162Scf00578g00317' => 'pax', 'Peaxi162Scf00785g00114' => 'pax', 'Peaxi162Scf00813g00119' => 'pax', 'Peaxi162Scf00906g00227' => 'pax', 'PGR004G0875' => 'pgr', 'PGR004G2424' => 'pgr', 'PGR031G1239' => 'pgr', 'PGR031G2474' => 'pgr', 'PGR044G0423' => 'pgr', 'PGSC0003DMG400001128' => 'stu', 'PGSC0003DMG400007336' => 'stu', 'PGSC0003DMG400016318' => 'stu', 'PGSC0003DMG400016319' => 'stu', 'PGSC0003DMG400018074' => 'stu', 'Phvul.001G157700' => 'pvu', 'Phvul.002G148550' => 'pvu', 'Phvul.002G320200' => 'pvu', 'Phvul.003G089200' => 'pvu', 'Phvul.007G126000' => 'pvu', 'Phvul.007G126100' => 'pvu', 'Phvul.007G178000' => 'pvu', 'Phvul.007G178200' => 'pvu', 'Potri.002G043000' => 'ptr', 'Potri.002G043200' => 'ptr', 'Potri.003G123750' => 'ptr', 'Potri.005G055401' => 'ptr', 'Potri.005G219700' => 'ptr', 'Potri.005G220000' => 'ptr', 'Potri.008G161901' => 'ptr', 'Potri.008G162000' => 'ptr', 'Potri.008G162400' => 'ptr', 'Potri.010G076900' => 'ptr', 'Pp3c12_9180' => 'ppa', 'Pp3c13_19770' => 'ppa', 'Pp3c14_22950' => 'ppa', 'Pp3c16_12160' => 'ppa', 'Pp3c27_7820' => 'ppa', 'Pp3c2_3490' => 'ppa', 'Pp3c3_23700' => 'ppa', 'Pp3c3_36520' => 'ppa', 'Pp3c4_15250' => 'ppa', 'PRCOL_00007002' => 'pco', 'Prupe.1G030600' => 'ppe', 'Prupe.1G030700' => 'ppe', 'Prupe.6G345200' => 'ppe', 'Prupe.8G230300' => 'ppe', 'Prupe.8G230500' => 'ppe', 'Psat3g059600' => 'psa', 'Psat5g200920' => 'psa', 'Psat6g056440' => 'psa', 'Psat6g057360' => 'psa', 'Psat6g134120' => 'psa', 'Psat6g134160' => 'psa', 'Psat7g008640' => 'psa', 'Psat7g185240' => 'psa', 'PSO017G1330' => 'pso', 'PSO063G6097' => 'pso', 'PSO170G0835' => 'pso', 'PSO170G2499' => 'pso', 'PSO210G5058' => 'pso', 'PSO210G6154' => 'pso', 'PSO585G0031' => 'pso', 'PSO832G0264' => 'pso', 'PSO832G4288' => 'pso', 'QL03p027355' => 'qlo', 'QL03p027430' => 'qlo', 'QL04p081380' => 'qlo', 'QL06p015642' => 'qlo', 'QL06p015650' => 'qlo', 'QL06p015686' => 'qlo', 'QL12p042927' => 'qlo', 'QL93p1863_0035' => 'qlo', 'RcHm_v2.0_Chr3g0450581' => 'rch', 'RcHm_v2.0_Chr4g0390371' => 'rch', 'RcHm_v2.0_Chr4g0390381' => 'rch', 'RcHm_v2.0_Chr4g0390491' => 'rch', 'RcHm_v2.0_Chr4g0390501' => 'rch', 'RcHm_v2.0_Chr6g0289231' => 'rch', 'Rhsim04G0190400' => 'rsi', 'Rhsim04G0190500' => 'rsi', 'Rhsim04G0190600' => 'rsi', 'Rhsim13G0031400' => 'rsi', 'Rhsim13G0165600' => 'rsi', 'RhsimUnG0114600' => 'rsi', 'RhsimUnG0114700' => 'rsi', 'Sabra02G0034800' => 'sbr', 'Sabra02G0035100' => 'sbr', 'Sabra05G0168600' => 'sbr', 'Sabra05G0168800' => 'sbr', 'Sabra08G0123700' => 'sbr', 'Sabra10G0031900' => 'sbr', 'Sabra13G0039000' => 'sbr', 'SalBow2G0782' => 'sbo', 'SalBow2G1403' => 'sbo', 'SalBow4G0074' => 'sbo', 'SalBow4G2635' => 'sbo', 'SalBow5G3010' => 'sbo', 'Sc05g0000870' => 'sci', 'Sc05g0000890' => 'sci', 'Sc13g0005000' => 'sci', 'Sc13g0005030' => 'sci', 'Sc19g0003790' => 'sci', 'Sc19g0003800' => 'sci', 'Sed0003467' => 'sed', 'Sed0009355' => 'sed', 'Sed0009894' => 'sed', 'Sed0011972' => 'sed', 'Sed0021483' => 'sed', 'Sed0021750' => 'sed', 'Sed0026279' => 'sed', 'SEGI_05312' => 'sgi', 'SEGI_10112' => 'sgi', 'SEGI_15835' => 'sgi', 'SEGI_30386' => 'sgi', 'SEGI_34122' => 'sgi', 'SEGI_35063' => 'sgi', 'SGA_v2.0_scaffold101G29794' => 'sas', 'SGA_v2.0_scaffold1G00573' => 'sas', 'SGA_v2.0_scaffold79G25637' => 'sas', 'SGA_v2.0_scaffold88G27283' => 'sas', 'SGA_v2.0_scaffold88G27285' => 'sas', 'SGA_v2.0_scaffold88G27331' => 'sas', 'SHI09937' => 'shi', 'SMO119G0302' => 'smo', 'SMO137G0231' => 'smo', 'SMO367G1151' => 'smo', 'Solyc02g082000.3' => 'sly', 'Solyc06g031670.3' => 'sly', 'Solyc06g053810.3' => 'sly', 'Solyc07g025457.1' => 'sly', 'Solyc08g059740.1' => 'sly', 'Solyc08g059750.3' => 'sly', 'Solyc09g083370.3' => 'sly', 'Solyc12g038950.3' => 'sly', 'Sopen02g026630' => 'spe', 'Sopen06g018930' => 'spe', 'Sopen06g018940' => 'spe', 'Sopen08g009460' => 'spe', 'Sopen09g032290' => 'spe', 'Sp1g03080' => 'spa', 'Sp1g03090' => 'spa', 'Sp1g05480' => 'spa', 'Sp2g07860' => 'spa', 'Sp2g08430' => 'spa', 'Sp2g08440' => 'spa', 'Sp2g26200' => 'spa', 'Sp4g13170' => 'spa', 'Sp6g33840' => 'spa', 'SpUn1204_0010' => 'spa', 'TAR365G0908' => 'tar', 'TAR381G1270' => 'tar', 'TAR381G1651' => 'tar', 'TAR625G1131' => 'tar', 'TAR633G0962' => 'tar', 'TAR633G1729' => 'tar', 'TAR633G1864' => 'tar', 'TAR636G0221' => 'tar', 'TAR636G0314' => 'tar', 'TAR636G3202' => 'tar', 'THA.LOC104800805' => 'tha', 'THA.LOC104801096' => 'tha', 'THA.LOC104801555' => 'tha', 'THA.LOC104808491' => 'tha', 'THA.LOC104808595' => 'tha', 'THA.LOC104815985' => 'tha', 'THA.LOC104822250' => 'tha', 'THA.LOC104826071' => 'tha', 'Thecc.01G265200' => 'tca', 'Thecc.01G265300' => 'tca', 'Thecc.01G265700' => 'tca', 'Thecc.03G109100' => 'tca', 'Thecc.04G245900' => 'tca', 'Thecc.04G246000' => 'tca', 'Thhalv10003334m.g' => 'esa', 'Thhalv10005508m.g' => 'esa', 'Thhalv10005643m.g' => 'esa', 'Thhalv10007316m.g' => 'esa', 'Thhalv10009006m.g' => 'esa', 'Thhalv10009309m.g' => 'esa', 'Thhalv10014917m.g' => 'esa', 'Thhalv10014919m.g' => 'esa', 'Thhalv10015393m.g' => 'esa', 'Thhalv10016515m.g' => 'esa', 'Thhalv10029242m.g' => 'esa', 'TPR.G16654' => 'tpr', 'TPR.G20589' => 'tpr', 'TPR.G23029' => 'tpr', 'TPR.G27731' => 'tpr', 'TPR.G28889' => 'tpr', 'TPR.G28899' => 'tpr', 'TPR.G30846' => 'tpr', 'TPR.G5452' => 'tpr', 'TPR.G5713' => 'tpr', 'TPR.G9046' => 'tpr', 'TPR.G9061' => 'tpr', 'TWI09G1075' => 'twi', 'TWI12G0806' => 'twi', 'TWI18G0108' => 'twi', 'TWI53G1361' => 'twi', 'TWI73G0185' => 'twi', 'TWI73G0427' => 'twi', 'unitig_37.g12001' => 'ugi', 'unitig_747.g21660' => 'ugi', 'unitig_748.g7232' => 'ugi', 'unitig_748.g7315' => 'ugi', 'unitig_85.g27262' => 'ugi', 'unitig_92.g28220' => 'ugi', 'vmacro02632' => 'vma', 'vmacro08410' => 'vma', 'vmacro08411' => 'vma', 'vmacro15407' => 'vma', 'VMungo0251G3619' => 'vmu', 'VMungo0720G1204' => 'vmu', 'VMungo0720G1918' => 'vmu', 'VMungo0720G2387' => 'vmu', 'VMungo0720G2961' => 'vmu', 'VMungo1215G2154' => 'vmu', 'VMungo1383G2411' => 'vmu', 'Zm00001eb051130' => 'zma', 'Zm00001eb116830' => 'zma', 'Zm00001eb116850' => 'zma', 'Zm00001eb151740' => 'zma', 'Zm00001eb292360' => 'zma', 'Zm00001eb301640' => 'zma' ), 'gf_id' => 'HOM05D000856', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000856' ), 'data_identifier' => 'HOM05D000856', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000856', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p00010' => 'bna', 'A03p04160' => 'bna', 'A03p17160' => 'bna', 'A04p23370' => 'bna', 'A05p14860' => 'bna', 'A08p37020' => 'bna', 'A09p08050' => 'bna', 'A09p66800' => 'bna', 'A09p67940' => 'bna', 'A10p02680' => 'bna', 'A10p05320' => 'bna', 'Aa31LG1G20560' => 'aar', 'Aa31LG1G20610' => 'aar', 'Aa31LG1G7810' => 'aar', 'Aa31LG5G3590' => 'aar', 'Aa31LG5G6140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3819' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4683' => 'aag', 'Actinidia04480' => 'ach', 'Actinidia05466' => 'ach', 'Actinidia08445' => 'ach', 'Actinidia21170' => 'ach', 'Actinidia24812' => 'ach', 'Actinidia24951' => 'ach', 'Actinidia40088' => 'ach', 'Ah.02g111660' => 'amhyb', 'Ah.11g048900' => 'amhyb', 'Ah.11g049910' => 'amhyb', 'AL1G13870' => 'aly', 'AL1G13880' => 'aly', 'AL1G16760' => 'aly', 'AL390U10020' => 'aly', 'AL4G25520' => 'aly', 'AL6G19890' => 'aly', 'AL6G19900' => 'aly', 'AL6G19910' => 'aly', 'AL8G40100' => 'aly', 'Aqoxy2G03562' => 'aox', 'Aqoxy5G00316' => 'aox', 'Aqoxy5G00926' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1628KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1H403S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2FU6SJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.882I6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8YRY2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YN1SN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AF70II' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZA8L1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F916KL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHRD8H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KTZ8QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S22EMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8M29T' => 'arhy', 'AT1G04270' => 'ath', 'AT1G04280' => 'ath', 'AT1G06750' => 'ath', 'AT1G33850' => 'ath', 'AT2G30630' => 'ath', 'AT5G09490' => 'ath', 'AT5G09500' => 'ath', 'AT5G09510' => 'ath', 'AT5G43640' => 'ath', 'AT5G63070' => 'ath', 'ATR0605G315' => 'atr', 'Atru.chr11.175' => 'acertr', 'Atru.chr11.653' => 'acertr', 'Atru.chr3.1616' => 'acertr', 'Atru.chr4.2230' => 'acertr', 'Atru.chr4.2232' => 'acertr', 'Atru.chr5.1598' => 'acertr', 'Atru.chr5.1600' => 'acertr', 'Atru.chr5.2188' => 'acertr', 'AUR62008326' => 'cqu', 'AUR62011922' => 'cqu', 'AUR62011924' => 'cqu', 'AUR62021771' => 'cqu', 'AUR62032237' => 'cqu', 'AUR62032240' => 'cqu', 'BcaB01g05572' => 'bca', 'BcaB02g10337' => 'bca', 'BcaB04g19944' => 'bca', 'BcaB05g21548' => 'bca', 'BcaB05g21549' => 'bca', 'BcaB05g23227' => 'bca', 'BcaB06g26256' => 'bca', 'BcaB06g26257' => 'bca', 'BcaB06g28379' => 'bca', 'BcaC02g11159' => 'bca', 'BcaC03g13258' => 'bca', 'BcaC03g13259' => 'bca', 'BcaC05g24456' => 'bca', 'BcaC05g24457' => 'bca', 'BcaC07g36922' => 'bca', 'BcaC07g36923' => 'bca', 'BcaC07g42050' => 'bca', 'BcaC07g42176' => 'bca', 'BcaC07g42195' => 'bca', 'BcaC07g42196' => 'bca', 'BcaNung06674' => 'bca', 'BolC2t06351H' => 'bol', 'BolC2t06352H' => 'bol', 'BolC3t12993H' => 'bol', 'BolC4t23525H' => 'bol', 'BolC4t27475H' => 'bol', 'BolC5t29025H' => 'bol', 'BolC5t29026H' => 'bol', 'BolC8t46898H' => 'bol', 'BolC8t46899H' => 'bol', 'BolC8t52630H' => 'bol', 'BolC8t52765H' => 'bol', 'BolC9t53824H' => 'bol', 'BraA03t09760Z' => 'bra', 'BraA03t10990Z' => 'bra', 'BraA05t20413Z' => 'bra', 'BraA08t35602Z' => 'bra', 'BraA09t36458Z' => 'bra', 'BraA09t42018Z' => 'bra', 'BraA09t42129Z' => 'bra', 'BraA10t42536Z' => 'bra', 'BraA10t42537Z' => 'bra', 'C01p10690' => 'bna', 'C02p03890' => 'bna', 'C02p03900' => 'bna', 'C03p04620' => 'bna', 'C04p19870' => 'bna', 'C04p59670' => 'bna', 'C05p02460' => 'bna', 'C05p02470' => 'bna', 'C08p00980' => 'bna', 'C08p00990' => 'bna', 'C08p51030' => 'bna', 'C08p52360' => 'bna', 'C09p09120' => 'bna', 'CAN.G19.15' => 'can', 'CAN.G251.10' => 'can', 'CAN.G251.9' => 'can', 'CAN.G398.24' => 'can', 'CAN.G410.32' => 'can', 'CAN.G881.2' => 'can', 'CANSAT01G3025' => 'cansat', 'CANSAT78G1211' => 'cansat', 'CANSAT78G1218' => 'cansat', 'CANSAT78G1521' => 'cansat', 'CANSAT78G1670' => 'cansat', 'CARHR003600' => 'chi', 'CARHR003610' => 'chi', 'CARHR006290' => 'chi', 'CARHR006430' => 'chi', 'CARHR124110' => 'chi', 'CARHR203870' => 'chi', 'CARHR203880' => 'chi', 'CARHR203890' => 'chi', 'CARHR276880' => 'chi', 'Carub.0001s0346' => 'cru', 'Carub.0001s0347' => 'cru', 'Carub.0001s0607' => 'cru', 'Carub.0003s2768' => 'cru', 'Carub.0003s2769' => 'cru', 'Carub.0004s1178' => 'cru', 'Carub.0006s0806' => 'cru', 'Carub.0006s0807' => 'cru', 'Carub.0006s0808' => 'cru', 'Carub.0008s0501' => 'cru', 'Carub.0008s2379' => 'cru', 'Ca_08655_v3' => 'car', 'Ca_08922_v3' => 'car', 'Ca_08923_v3' => 'car', 'Ca_09119_v3' => 'car', 'Ca_09703_v3' => 'car', 'Ca_09705_v3' => 'car', 'Ca_09835_v3' => 'car', 'Ca_26403_v3' => 'car', 'Ca_30719_v3' => 'car', 'CBR_g17958' => 'cbr', 'CBR_g40516' => 'cbr', 'Cc00_g05350' => 'ccan', 'Cc01_g18690' => 'ccan', 'Cc03_g04830' => 'ccan', 'Cc03_g04850' => 'ccan', 'CDE02G4469' => 'cde', 'CDE06G0883' => 'cde', 'CDE06G1295' => 'cde', 'CDE06G1390' => 'cde', 'CDE07G0584' => 'cde', 'CDE07G1084' => 'cde', 'CDE08G1259' => 'cde', 'Cfa002341' => 'cfa', 'Cfa024337' => 'cfa', 'Ciclev10004749m.g' => 'ccl', 'Ciclev10006127m.g' => 'ccl', 'Ciclev10019720m.g' => 'ccl', 'Ciclev10022652m.g' => 'ccl', 'CiPaw.01G190400' => 'cil', 'CiPaw.01G190500' => 'cil', 'CiPaw.02G116400' => 'cil', 'CiPaw.02G116500' => 'cil', 'CiPaw.04G183000' => 'cil', 'CiPaw.04G183300' => 'cil', 'ClCG05G004610' => 'cla', 'ClCG05G004620' => 'cla', 'ClCG06G006730' => 'cla', 'ClCG06G006740' => 'cla', 'ClCG11G003690' => 'cla', 'COL.COLO4_08276' => 'col', 'COL.COLO4_08277' => 'col', 'COL.COLO4_15787' => 'col', 'COL.COLO4_15789' => 'col', 'Cpa.g.c44815' => 'cpa', 'Cpa.g.sc52.144' => 'cpa', 'Cpa.g.sc58.46' => 'cpa', 'Cpa.g.sc58.47' => 'cpa', 'Cre08.g360900' => 'cre', 'CsaV3_2G013030' => 'csa', 'CsaV3_2G013050' => 'csa', 'CsaV3_2G015620' => 'csa', 'CsaV3_3G012590' => 'csa', 'CsaV3_3G012600' => 'csa', 'CSS0001641' => 'camsi', 'CSS0008310' => 'camsi', 'CSS0013011' => 'camsi', 'CSS0017147' => 'camsi', 'CSS0022970' => 'camsi', 'CSS0025655' => 'camsi', 'CSS0028665' => 'camsi', 'CSS0029117' => 'camsi', 'CSS0032024' => 'camsi', 'CSS0039681' => 'camsi', 'CSS0046516' => 'camsi', 'CSS0050307' => 'camsi', 'DCAR_005871' => 'dca', 'DCAR_007342' => 'dca', 'DCAR_024228' => 'dca', 'DCAR_027277' => 'dca', 'DCAR_030718' => 'dca', 'Dinv20287' => 'din', 'Dinv22461' => 'din', 'Dinv22464' => 'din', 'Dinv29912' => 'din', 'Dinv29913' => 'din', 'Dinv34580' => 'din', 'Dinv34582' => 'din', 'Dinv44632' => 'din', 'Duzib052G0266' => 'dzi', 'Duzib133G0907' => 'dzi', 'Duzib133G1034' => 'dzi', 'Duzib138G0207' => 'dzi', 'Duzib138G0491' => 'dzi', 'Duzib151G0812' => 'dzi', 'Duzib151G1166' => 'dzi', 'Duzib168G0192' => 'dzi', 'Duzib211G0077' => 'dzi', 'Duzib212G0429' => 'dzi', 'Duzib212G0472' => 'dzi', 'ECA233G2617' => 'eca', 'ECA236G4188' => 'eca', 'ECA240G0936' => 'eca', 'ECA240G1129' => 'eca', 'ECA247G0623' => 'eca', 'EL10Ac5g10451' => 'bvu', 'EL10Ac5g10453' => 'bvu', 'EL10Ac5g10894' => 'bvu', 'Eucgr.H00192' => 'egr', 'Eucgr.H00193' => 'egr', 'Eucgr.H00194' => 'egr', 'Eucgr.J01562' => 'egr', 'Eucgr.K03301' => 'egr', 'FAN02G0632' => 'fan', 'FAN05G5378' => 'fan', 'FAN09G3247' => 'fan', 'FAN12G0435' => 'fan', 'FAN12G2426' => 'fan', 'FAN14G1707' => 'fan', 'FAN14G4725' => 'fan', 'FAN15G2071' => 'fan', 'FAN17G3065' => 'fan', 'FAN19G1376' => 'fan', 'FAN20G0354' => 'fan', 'FAN20G2429' => 'fan', 'FAN20G2658' => 'fan', 'FAN24G2343' => 'fan', 'FAN27G2362' => 'fan', 'FAN28G1765' => 'fan', 'FvH4_1g16020' => 'fve', 'FvH4_2g04890' => 'fve', 'FvH4_2g22270' => 'fve', 'FvH4_4g02630' => 'fve', 'FvH4_4g02640' => 'fve', 'FvH4_6g02650' => 'fve', 'Glyma.02G140600' => 'gma', 'Glyma.03G159900' => 'gma', 'Glyma.05G234800' => 'gma', 'Glyma.07G269600' => 'gma', 'Glyma.08G042300' => 'gma', 'Glyma.10G033500' => 'gma', 'Glyma.10G185200' => 'gma', 'Glyma.17G004300' => 'gma', 'Glyma.19G161900' => 'gma', 'Glyma.20G205100' => 'gma', 'Glyma.20G205200' => 'gma', 'Gohir.A01G139101' => 'ghi', 'Gohir.A02G035600' => 'ghi', 'Gohir.A02G117901' => 'ghi', 'Gohir.A07G210100' => 'ghi', 'Gohir.A07G210200' => 'ghi', 'Gohir.A08G061100' => 'ghi', 'Gohir.A09G223000' => 'ghi', 'Gohir.A09G223100' => 'ghi', 'Gohir.A10G113900' => 'ghi', 'Gohir.A10G114000' => 'ghi', 'Gohir.D02G042300' => 'ghi', 'Gohir.D07G216100' => 'ghi', 'Gohir.D07G216200' => 'ghi', 'Gohir.D08G070400' => 'ghi', 'Gohir.D09G225000' => 'ghi', 'Gohir.D09G225100' => 'ghi', 'Gohir.D10G152300' => 'ghi', 'Gohir.D10G153200' => 'ghi', 'Gohir.D11G133701' => 'ghi', 'Gorai.004G074100' => 'gra', 'Gorai.005G046800' => 'gra', 'Gorai.006G246500' => 'gra', 'Gorai.006G246600' => 'gra', 'Gorai.007G142900' => 'gra', 'Gorai.011G171000' => 'gra', 'Gorai.011G171100' => 'gra', 'Gorai.013G104300' => 'gra', 'Gorai.013G104400' => 'gra', 'GSVIVG01000754001' => 'vvi', 'GSVIVG01000756001' => 'vvi', 'GSVIVG01010903001' => 'vvi', 'GSVIVG01017623001' => 'vvi', 'GSVIVG01018113001' => 'vvi', 'GSVIVG01018116001' => 'vvi', 'GSVIVG01018118001' => 'vvi', 'HanXRQChr03g0076211' => 'han', 'HanXRQChr03g0092431' => 'han', 'HanXRQChr03g0092441' => 'han', 'HanXRQChr03g0092591' => 'han', 'HanXRQChr03g0092671' => 'han', 'HanXRQChr03g0092681' => 'han', 'HanXRQChr03g0092691' => 'han', 'HanXRQChr03g0092701' => 'han', 'HanXRQChr03g0092721' => 'han', 'HanXRQChr03g0092731' => 'han', 'HanXRQChr04g0113681' => 'han', 'HanXRQChr10g0281371' => 'han', 'HanXRQChr11g0337141' => 'han', 'HanXRQChr13g0424521' => 'han', 'HanXRQChr13g0424531' => 'han', 'HanXRQChr13g0424541' => 'han', 'HanXRQChr16g0498221' => 'han', 'Haze_04377' => 'cav', 'Haze_11298' => 'cav', 'Haze_24547' => 'cav', 'Haze_24550' => 'cav', 'Haze_26587' => 'cav', 'Hma1.2p1_0650F.1_g195410' => 'hma', 'Hma1.2p1_0893F.1_g233470' => 'hma', 'HPP92_006508' => 'vpl', 'HPP92_024780' => 'vpl', 'Hund02688' => 'sun', 'Hund09380' => 'sun', 'Hund09381' => 'sun', 'Hund09832' => 'sun', 'Hund09833' => 'sun', 'Hund11351' => 'sun', 'Hund11513' => 'sun', 'Lalb_Chr06g0162591' => 'lal', 'Lalb_Chr06g0162601' => 'lal', 'Lalb_Chr06g0169321' => 'lal', 'Lalb_Chr09g0330951' => 'lal', 'Lalb_Chr16g0387631' => 'lal', 'Lalb_Chr21g0306241' => 'lal', 'Lalb_Chr25g0290051' => 'lal', 'Lalb_Chr25g0290061' => 'lal', 'Lalb_Chr25g0290071' => 'lal', 'Lj1g0003876' => 'lja', 'Lj1P1207T36' => 'lonja', 'Lj2C1156G12' => 'lonja', 'Lj3A793G39' => 'lonja', 'Lj3C580G2' => 'lonja', 'Lj3C780G2' => 'lonja', 'Lj3C780T4' => 'lonja', 'Lj3C793G9' => 'lonja', 'Lj4g0012960' => 'lja', 'Lj5g0021252' => 'lja', 'Lj5g0021484' => 'lja', 'Lj5g0024528' => 'lja', 'Lj6A399T12' => 'lonja', 'Lj6A656G65' => 'lonja', 'Lsat_1_v5_gn_3_125500' => 'lsa', 'Lsat_1_v5_gn_3_125540' => 'lsa', 'Lsat_1_v5_gn_5_72701' => 'lsa', 'Lsat_1_v5_gn_8_91560' => 'lsa', 'Lsat_1_v5_gn_9_9640' => 'lsa', 'Manes.01G200600' => 'mes', 'Manes.01G200700' => 'mes', 'Manes.03G168900' => 'mes', 'Manes.03G169000' => 'mes', 'Manes.05G085801' => 'mes', 'Manes.05G086200' => 'mes', 'Manes.15G036700' => 'mes', 'Manes.15G036900' => 'mes', 'Mapoly0004s0172' => 'mpo', 'Mapoly0023s0001' => 'mpo', 'Mapoly0142s0012' => 'mpo', 'MBI01_g32854_MAGBIO' => 'mbi', 'MBI11_g24427_MAGBIO' => 'mbi', 'MBI11_g47319_MAGBIO' => 'mbi', 'MCO01G433' => 'mco', 'MD00G1187800' => 'mdo', 'MD04G1226500' => 'mdo', 'MD05G1203900' => 'mdo', 'MD10G1191100' => 'mdo', 'MD12G1243500' => 'mdo', 'MD13G1207000' => 'mdo', 'MD13G1207100' => 'mdo', 'MD16G1208600' => 'mdo', 'Medtr1g050352' => 'mtr', 'Medtr1g070385' => 'mtr', 'Medtr1g070450' => 'mtr', 'Medtr1g075200' => 'mtr', 'Medtr1g075250' => 'mtr', 'Medtr1g075260' => 'mtr', 'Medtr1g475250' => 'mtr', 'Medtr4g075450' => 'mtr', 'Medtr7g096300' => 'mtr', 'Medtr8g105110' => 'mtr', 'MELO3C006470.2' => 'cme', 'MELO3C006471.2' => 'cme', 'MELO3C020772.2' => 'cme', 'MELO3C026780.2' => 'cme', 'MELO3C026781.2' => 'cme', 'Migut.D00390' => 'egut', 'Migut.G00435' => 'egut', 'Migut.G00436' => 'egut', 'Migut.G00718' => 'egut', 'MSTRG.21891' => 'ama', 'MSTRG.26910' => 'ama', 'MSTRG.4099' => 'ama', 'MSTRG.9925' => 'ama', 'Nitab4.5_0000165g0010' => 'nta', 'Nitab4.5_0000209g0180' => 'nta', 'Nitab4.5_0000244g0440' => 'nta', 'Nitab4.5_0000525g0220' => 'nta', 'Nitab4.5_0001597g0020' => 'nta', 'Nitab4.5_0001878g0040' => 'nta', 'Nitab4.5_0001878g0060' => 'nta', 'Nitab4.5_0002838g0100' => 'nta', 'Nitab4.5_0002838g0120' => 'nta', 'Nitab4.5_0004798g0030' => 'nta', 'Nitab4.5_0005420g0010' => 'nta', 'Nitab4.5_0005507g0010' => 'nta', 'Nitab4.5_0005574g0020' => 'nta', 'Nitab4.5_0005838g0010' => 'nta', 'Nitab4.5_0010580g0020' => 'nta', 'Nn1g02599' => 'nnu', 'Nn1g02608' => 'nnu', 'Nn3g17742' => 'nnu', 'Nn3g19534' => 'nnu', 'Nn3g19535' => 'nnu', 'Oeu008790.1' => 'oeu', 'Oeu008792.1' => 'oeu', 'Oeu032590.1' => 'oeu', 'Oeu035349.1' => 'oeu', 'Oeu049791.1' => 'oeu', 'Os01g0774500' => 'osa', 'Os03g0628800' => 'osa', 'Os03g0798600' => 'osa', 'Os05g0508800' => 'osa', 'Peaxi162Scf00036g02018' => 'pax', 'Peaxi162Scf00578g00032' => 'pax', 'Peaxi162Scf00578g00317' => 'pax', 'Peaxi162Scf00785g00114' => 'pax', 'Peaxi162Scf00813g00119' => 'pax', 'Peaxi162Scf00906g00227' => 'pax', 'PGR004G0875' => 'pgr', 'PGR004G2424' => 'pgr', 'PGR031G1239' => 'pgr', 'PGR031G2474' => 'pgr', 'PGR044G0423' => 'pgr', 'PGSC0003DMG400001128' => 'stu', 'PGSC0003DMG400007336' => 'stu', 'PGSC0003DMG400016318' => 'stu', 'PGSC0003DMG400016319' => 'stu', 'PGSC0003DMG400018074' => 'stu', 'Phvul.001G157700' => 'pvu', 'Phvul.002G148550' => 'pvu', 'Phvul.002G320200' => 'pvu', 'Phvul.003G089200' => 'pvu', 'Phvul.007G126000' => 'pvu', 'Phvul.007G126100' => 'pvu', 'Phvul.007G178000' => 'pvu', 'Phvul.007G178200' => 'pvu', 'Potri.002G043000' => 'ptr', 'Potri.002G043200' => 'ptr', 'Potri.003G123750' => 'ptr', 'Potri.005G055401' => 'ptr', 'Potri.005G219700' => 'ptr', 'Potri.005G220000' => 'ptr', 'Potri.008G161901' => 'ptr', 'Potri.008G162000' => 'ptr', 'Potri.008G162400' => 'ptr', 'Potri.010G076900' => 'ptr', 'Pp3c12_9180' => 'ppa', 'Pp3c13_19770' => 'ppa', 'Pp3c14_22950' => 'ppa', 'Pp3c16_12160' => 'ppa', 'Pp3c27_7820' => 'ppa', 'Pp3c2_3490' => 'ppa', 'Pp3c3_23700' => 'ppa', 'Pp3c3_36520' => 'ppa', 'Pp3c4_15250' => 'ppa', 'PRCOL_00007002' => 'pco', 'Prupe.1G030600' => 'ppe', 'Prupe.1G030700' => 'ppe', 'Prupe.6G345200' => 'ppe', 'Prupe.8G230300' => 'ppe', 'Prupe.8G230500' => 'ppe', 'Psat3g059600' => 'psa', 'Psat5g200920' => 'psa', 'Psat6g056440' => 'psa', 'Psat6g057360' => 'psa', 'Psat6g134120' => 'psa', 'Psat6g134160' => 'psa', 'Psat7g008640' => 'psa', 'Psat7g185240' => 'psa', 'PSO017G1330' => 'pso', 'PSO063G6097' => 'pso', 'PSO170G0835' => 'pso', 'PSO170G2499' => 'pso', 'PSO210G5058' => 'pso', 'PSO210G6154' => 'pso', 'PSO585G0031' => 'pso', 'PSO832G0264' => 'pso', 'PSO832G4288' => 'pso', 'QL03p027355' => 'qlo', 'QL03p027430' => 'qlo', 'QL04p081380' => 'qlo', 'QL06p015642' => 'qlo', 'QL06p015650' => 'qlo', 'QL06p015686' => 'qlo', 'QL12p042927' => 'qlo', 'QL93p1863_0035' => 'qlo', 'RcHm_v2.0_Chr3g0450581' => 'rch', 'RcHm_v2.0_Chr4g0390371' => 'rch', 'RcHm_v2.0_Chr4g0390381' => 'rch', 'RcHm_v2.0_Chr4g0390491' => 'rch', 'RcHm_v2.0_Chr4g0390501' => 'rch', 'RcHm_v2.0_Chr6g0289231' => 'rch', 'Rhsim04G0190400' => 'rsi', 'Rhsim04G0190500' => 'rsi', 'Rhsim04G0190600' => 'rsi', 'Rhsim13G0031400' => 'rsi', 'Rhsim13G0165600' => 'rsi', 'RhsimUnG0114600' => 'rsi', 'RhsimUnG0114700' => 'rsi', 'Sabra02G0034800' => 'sbr', 'Sabra02G0035100' => 'sbr', 'Sabra05G0168600' => 'sbr', 'Sabra05G0168800' => 'sbr', 'Sabra08G0123700' => 'sbr', 'Sabra10G0031900' => 'sbr', 'Sabra13G0039000' => 'sbr', 'SalBow2G0782' => 'sbo', 'SalBow2G1403' => 'sbo', 'SalBow4G0074' => 'sbo', 'SalBow4G2635' => 'sbo', 'SalBow5G3010' => 'sbo', 'Sc05g0000870' => 'sci', 'Sc05g0000890' => 'sci', 'Sc13g0005000' => 'sci', 'Sc13g0005030' => 'sci', 'Sc19g0003790' => 'sci', 'Sc19g0003800' => 'sci', 'Sed0003467' => 'sed', 'Sed0009355' => 'sed', 'Sed0009894' => 'sed', 'Sed0011972' => 'sed', 'Sed0021483' => 'sed', 'Sed0021750' => 'sed', 'Sed0026279' => 'sed', 'SEGI_05312' => 'sgi', 'SEGI_10112' => 'sgi', 'SEGI_15835' => 'sgi', 'SEGI_30386' => 'sgi', 'SEGI_34122' => 'sgi', 'SEGI_35063' => 'sgi', 'SGA_v2.0_scaffold101G29794' => 'sas', 'SGA_v2.0_scaffold1G00573' => 'sas', 'SGA_v2.0_scaffold79G25637' => 'sas', 'SGA_v2.0_scaffold88G27283' => 'sas', 'SGA_v2.0_scaffold88G27285' => 'sas', 'SGA_v2.0_scaffold88G27331' => 'sas', 'SHI09937' => 'shi', 'SMO119G0302' => 'smo', 'SMO137G0231' => 'smo', 'SMO367G1151' => 'smo', 'Solyc02g082000.3' => 'sly', 'Solyc06g031670.3' => 'sly', 'Solyc06g053810.3' => 'sly', 'Solyc07g025457.1' => 'sly', 'Solyc08g059740.1' => 'sly', 'Solyc08g059750.3' => 'sly', 'Solyc09g083370.3' => 'sly', 'Solyc12g038950.3' => 'sly', 'Sopen02g026630' => 'spe', 'Sopen06g018930' => 'spe', 'Sopen06g018940' => 'spe', 'Sopen08g009460' => 'spe', 'Sopen09g032290' => 'spe', 'Sp1g03080' => 'spa', 'Sp1g03090' => 'spa', 'Sp1g05480' => 'spa', 'Sp2g07860' => 'spa', 'Sp2g08430' => 'spa', 'Sp2g08440' => 'spa', 'Sp2g26200' => 'spa', 'Sp4g13170' => 'spa', 'Sp6g33840' => 'spa', 'SpUn1204_0010' => 'spa', 'TAR365G0908' => 'tar', 'TAR381G1270' => 'tar', 'TAR381G1651' => 'tar', 'TAR625G1131' => 'tar', 'TAR633G0962' => 'tar', 'TAR633G1729' => 'tar', 'TAR633G1864' => 'tar', 'TAR636G0221' => 'tar', 'TAR636G0314' => 'tar', 'TAR636G3202' => 'tar', 'THA.LOC104800805' => 'tha', 'THA.LOC104801096' => 'tha', 'THA.LOC104801555' => 'tha', 'THA.LOC104808491' => 'tha', 'THA.LOC104808595' => 'tha', 'THA.LOC104815985' => 'tha', 'THA.LOC104822250' => 'tha', 'THA.LOC104826071' => 'tha', 'Thecc.01G265200' => 'tca', 'Thecc.01G265300' => 'tca', 'Thecc.01G265700' => 'tca', 'Thecc.03G109100' => 'tca', 'Thecc.04G245900' => 'tca', 'Thecc.04G246000' => 'tca', 'Thhalv10003334m.g' => 'esa', 'Thhalv10005508m.g' => 'esa', 'Thhalv10005643m.g' => 'esa', 'Thhalv10007316m.g' => 'esa', 'Thhalv10009006m.g' => 'esa', 'Thhalv10009309m.g' => 'esa', 'Thhalv10014917m.g' => 'esa', 'Thhalv10014919m.g' => 'esa', 'Thhalv10015393m.g' => 'esa', 'Thhalv10016515m.g' => 'esa', 'Thhalv10029242m.g' => 'esa', 'TPR.G16654' => 'tpr', 'TPR.G20589' => 'tpr', 'TPR.G23029' => 'tpr', 'TPR.G27731' => 'tpr', 'TPR.G28889' => 'tpr', 'TPR.G28899' => 'tpr', 'TPR.G30846' => 'tpr', 'TPR.G5452' => 'tpr', 'TPR.G5713' => 'tpr', 'TPR.G9046' => 'tpr', 'TPR.G9061' => 'tpr', 'TWI09G1075' => 'twi', 'TWI12G0806' => 'twi', 'TWI18G0108' => 'twi', 'TWI53G1361' => 'twi', 'TWI73G0185' => 'twi', 'TWI73G0427' => 'twi', 'unitig_37.g12001' => 'ugi', 'unitig_747.g21660' => 'ugi', 'unitig_748.g7232' => 'ugi', 'unitig_748.g7315' => 'ugi', 'unitig_85.g27262' => 'ugi', 'unitig_92.g28220' => 'ugi', 'vmacro02632' => 'vma', 'vmacro08410' => 'vma', 'vmacro08411' => 'vma', 'vmacro15407' => 'vma', 'VMungo0251G3619' => 'vmu', 'VMungo0720G1204' => 'vmu', 'VMungo0720G1918' => 'vmu', 'VMungo0720G2387' => 'vmu', 'VMungo0720G2961' => 'vmu', 'VMungo1215G2154' => 'vmu', 'VMungo1383G2411' => 'vmu', 'Zm00001eb051130' => 'zma', 'Zm00001eb116830' => 'zma', 'Zm00001eb116850' => 'zma', 'Zm00001eb151740' => 'zma', 'Zm00001eb292360' => 'zma', 'Zm00001eb301640' => 'zma' ) $gf_id = 'HOM05D000856' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000856' ) $data_identifier = 'HOM05D000856' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 13, 'ath' => (int) 10, 'atr' => (int) 1, 'acertr' => (int) 8, 'cqu' => (int) 6, 'bca' => (int) 21, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 11, 'car' => (int) 9, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 8, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 5, 'fan' => (int) 16, 'fve' => (int) 6, 'gma' => (int) 11, 'ghi' => (int) 19, 'gra' => (int) 9, 'vvi' => (int) 7, 'han' => (int) 17, 'cav' => (int) 5, 'hma' => (int) 2, 'vpl' => (int) 2, 'sun' => (int) 7, 'lal' => (int) 9, 'lja' => (int) 5, 'lonja' => (int) 9, 'lsa' => (int) 5, 'mes' => (int) 8, 'mpo' => (int) 3, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 10, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 15, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 9, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 9, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 6, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 5, 'spa' => (int) 10, 'tar' => (int) 10, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 11, 'tpr' => (int) 11, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 4, 'vmu' => (int) 7, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb301640' $species_info = array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ) $local_species = 'ghi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000856', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p00010' => 'bna', 'A03p04160' => 'bna', 'A03p17160' => 'bna', 'A04p23370' => 'bna', 'A05p14860' => 'bna', 'A08p37020' => 'bna', 'A09p08050' => 'bna', 'A09p66800' => 'bna', 'A09p67940' => 'bna', 'A10p02680' => 'bna', 'A10p05320' => 'bna', 'Aa31LG1G20560' => 'aar', 'Aa31LG1G20610' => 'aar', 'Aa31LG1G7810' => 'aar', 'Aa31LG5G3590' => 'aar', 'Aa31LG5G6140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3819' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4683' => 'aag', 'Actinidia04480' => 'ach', 'Actinidia05466' => 'ach', 'Actinidia08445' => 'ach', 'Actinidia21170' => 'ach', 'Actinidia24812' => 'ach', 'Actinidia24951' => 'ach', 'Actinidia40088' => 'ach', 'Ah.02g111660' => 'amhyb', 'Ah.11g048900' => 'amhyb', 'Ah.11g049910' => 'amhyb', 'AL1G13870' => 'aly', 'AL1G13880' => 'aly', 'AL1G16760' => 'aly', 'AL390U10020' => 'aly', 'AL4G25520' => 'aly', 'AL6G19890' => 'aly', 'AL6G19900' => 'aly', 'AL6G19910' => 'aly', 'AL8G40100' => 'aly', 'Aqoxy2G03562' => 'aox', 'Aqoxy5G00316' => 'aox', 'Aqoxy5G00926' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1628KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1H403S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2FU6SJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.882I6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8YRY2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YN1SN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AF70II' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZA8L1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F916KL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHRD8H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KTZ8QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S22EMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8M29T' => 'arhy', 'AT1G04270' => 'ath', 'AT1G04280' => 'ath', 'AT1G06750' => 'ath', 'AT1G33850' => 'ath', 'AT2G30630' => 'ath', 'AT5G09490' => 'ath', 'AT5G09500' => 'ath', 'AT5G09510' => 'ath', 'AT5G43640' => 'ath', 'AT5G63070' => 'ath', 'ATR0605G315' => 'atr', 'Atru.chr11.175' => 'acertr', 'Atru.chr11.653' => 'acertr', 'Atru.chr3.1616' => 'acertr', 'Atru.chr4.2230' => 'acertr', 'Atru.chr4.2232' => 'acertr', 'Atru.chr5.1598' => 'acertr', 'Atru.chr5.1600' => 'acertr', 'Atru.chr5.2188' => 'acertr', 'AUR62008326' => 'cqu', 'AUR62011922' => 'cqu', 'AUR62011924' => 'cqu', 'AUR62021771' => 'cqu', 'AUR62032237' => 'cqu', 'AUR62032240' => 'cqu', 'BcaB01g05572' => 'bca', 'BcaB02g10337' => 'bca', 'BcaB04g19944' => 'bca', 'BcaB05g21548' => 'bca', 'BcaB05g21549' => 'bca', 'BcaB05g23227' => 'bca', 'BcaB06g26256' => 'bca', 'BcaB06g26257' => 'bca', 'BcaB06g28379' => 'bca', 'BcaC02g11159' => 'bca', 'BcaC03g13258' => 'bca', 'BcaC03g13259' => 'bca', 'BcaC05g24456' => 'bca', 'BcaC05g24457' => 'bca', 'BcaC07g36922' => 'bca', 'BcaC07g36923' => 'bca', 'BcaC07g42050' => 'bca', 'BcaC07g42176' => 'bca', 'BcaC07g42195' => 'bca', 'BcaC07g42196' => 'bca', 'BcaNung06674' => 'bca', 'BolC2t06351H' => 'bol', 'BolC2t06352H' => 'bol', 'BolC3t12993H' => 'bol', 'BolC4t23525H' => 'bol', 'BolC4t27475H' => 'bol', 'BolC5t29025H' => 'bol', 'BolC5t29026H' => 'bol', 'BolC8t46898H' => 'bol', 'BolC8t46899H' => 'bol', 'BolC8t52630H' => 'bol', 'BolC8t52765H' => 'bol', 'BolC9t53824H' => 'bol', 'BraA03t09760Z' => 'bra', 'BraA03t10990Z' => 'bra', 'BraA05t20413Z' => 'bra', 'BraA08t35602Z' => 'bra', 'BraA09t36458Z' => 'bra', 'BraA09t42018Z' => 'bra', 'BraA09t42129Z' => 'bra', 'BraA10t42536Z' => 'bra', 'BraA10t42537Z' => 'bra', 'C01p10690' => 'bna', 'C02p03890' => 'bna', 'C02p03900' => 'bna', 'C03p04620' => 'bna', 'C04p19870' => 'bna', 'C04p59670' => 'bna', 'C05p02460' => 'bna', 'C05p02470' => 'bna', 'C08p00980' => 'bna', 'C08p00990' => 'bna', 'C08p51030' => 'bna', 'C08p52360' => 'bna', 'C09p09120' => 'bna', 'CAN.G19.15' => 'can', 'CAN.G251.10' => 'can', 'CAN.G251.9' => 'can', 'CAN.G398.24' => 'can', 'CAN.G410.32' => 'can', 'CAN.G881.2' => 'can', 'CANSAT01G3025' => 'cansat', 'CANSAT78G1211' => 'cansat', 'CANSAT78G1218' => 'cansat', 'CANSAT78G1521' => 'cansat', 'CANSAT78G1670' => 'cansat', 'CARHR003600' => 'chi', 'CARHR003610' => 'chi', 'CARHR006290' => 'chi', 'CARHR006430' => 'chi', 'CARHR124110' => 'chi', 'CARHR203870' => 'chi', 'CARHR203880' => 'chi', 'CARHR203890' => 'chi', 'CARHR276880' => 'chi', 'Carub.0001s0346' => 'cru', 'Carub.0001s0347' => 'cru', 'Carub.0001s0607' => 'cru', 'Carub.0003s2768' => 'cru', 'Carub.0003s2769' => 'cru', 'Carub.0004s1178' => 'cru', 'Carub.0006s0806' => 'cru', 'Carub.0006s0807' => 'cru', 'Carub.0006s0808' => 'cru', 'Carub.0008s0501' => 'cru', 'Carub.0008s2379' => 'cru', 'Ca_08655_v3' => 'car', 'Ca_08922_v3' => 'car', 'Ca_08923_v3' => 'car', 'Ca_09119_v3' => 'car', 'Ca_09703_v3' => 'car', 'Ca_09705_v3' => 'car', 'Ca_09835_v3' => 'car', 'Ca_26403_v3' => 'car', 'Ca_30719_v3' => 'car', 'CBR_g17958' => 'cbr', 'CBR_g40516' => 'cbr', 'Cc00_g05350' => 'ccan', 'Cc01_g18690' => 'ccan', 'Cc03_g04830' => 'ccan', 'Cc03_g04850' => 'ccan', 'CDE02G4469' => 'cde', 'CDE06G0883' => 'cde', 'CDE06G1295' => 'cde', 'CDE06G1390' => 'cde', 'CDE07G0584' => 'cde', 'CDE07G1084' => 'cde', 'CDE08G1259' => 'cde', 'Cfa002341' => 'cfa', 'Cfa024337' => 'cfa', 'Ciclev10004749m.g' => 'ccl', 'Ciclev10006127m.g' => 'ccl', 'Ciclev10019720m.g' => 'ccl', 'Ciclev10022652m.g' => 'ccl', 'CiPaw.01G190400' => 'cil', 'CiPaw.01G190500' => 'cil', 'CiPaw.02G116400' => 'cil', 'CiPaw.02G116500' => 'cil', 'CiPaw.04G183000' => 'cil', 'CiPaw.04G183300' => 'cil', 'ClCG05G004610' => 'cla', 'ClCG05G004620' => 'cla', 'ClCG06G006730' => 'cla', 'ClCG06G006740' => 'cla', 'ClCG11G003690' => 'cla', 'COL.COLO4_08276' => 'col', 'COL.COLO4_08277' => 'col', 'COL.COLO4_15787' => 'col', 'COL.COLO4_15789' => 'col', 'Cpa.g.c44815' => 'cpa', 'Cpa.g.sc52.144' => 'cpa', 'Cpa.g.sc58.46' => 'cpa', 'Cpa.g.sc58.47' => 'cpa', 'Cre08.g360900' => 'cre', 'CsaV3_2G013030' => 'csa', 'CsaV3_2G013050' => 'csa', 'CsaV3_2G015620' => 'csa', 'CsaV3_3G012590' => 'csa', 'CsaV3_3G012600' => 'csa', 'CSS0001641' => 'camsi', 'CSS0008310' => 'camsi', 'CSS0013011' => 'camsi', 'CSS0017147' => 'camsi', 'CSS0022970' => 'camsi', 'CSS0025655' => 'camsi', 'CSS0028665' => 'camsi', 'CSS0029117' => 'camsi', 'CSS0032024' => 'camsi', 'CSS0039681' => 'camsi', 'CSS0046516' => 'camsi', 'CSS0050307' => 'camsi', 'DCAR_005871' => 'dca', 'DCAR_007342' => 'dca', 'DCAR_024228' => 'dca', 'DCAR_027277' => 'dca', 'DCAR_030718' => 'dca', 'Dinv20287' => 'din', 'Dinv22461' => 'din', 'Dinv22464' => 'din', 'Dinv29912' => 'din', 'Dinv29913' => 'din', 'Dinv34580' => 'din', 'Dinv34582' => 'din', 'Dinv44632' => 'din', 'Duzib052G0266' => 'dzi', 'Duzib133G0907' => 'dzi', 'Duzib133G1034' => 'dzi', 'Duzib138G0207' => 'dzi', 'Duzib138G0491' => 'dzi', 'Duzib151G0812' => 'dzi', 'Duzib151G1166' => 'dzi', 'Duzib168G0192' => 'dzi', 'Duzib211G0077' => 'dzi', 'Duzib212G0429' => 'dzi', 'Duzib212G0472' => 'dzi', 'ECA233G2617' => 'eca', 'ECA236G4188' => 'eca', 'ECA240G0936' => 'eca', 'ECA240G1129' => 'eca', 'ECA247G0623' => 'eca', 'EL10Ac5g10451' => 'bvu', 'EL10Ac5g10453' => 'bvu', 'EL10Ac5g10894' => 'bvu', 'Eucgr.H00192' => 'egr', 'Eucgr.H00193' => 'egr', 'Eucgr.H00194' => 'egr', 'Eucgr.J01562' => 'egr', 'Eucgr.K03301' => 'egr', 'FAN02G0632' => 'fan', 'FAN05G5378' => 'fan', 'FAN09G3247' => 'fan', 'FAN12G0435' => 'fan', 'FAN12G2426' => 'fan', 'FAN14G1707' => 'fan', 'FAN14G4725' => 'fan', 'FAN15G2071' => 'fan', 'FAN17G3065' => 'fan', 'FAN19G1376' => 'fan', 'FAN20G0354' => 'fan', 'FAN20G2429' => 'fan', 'FAN20G2658' => 'fan', 'FAN24G2343' => 'fan', 'FAN27G2362' => 'fan', 'FAN28G1765' => 'fan', 'FvH4_1g16020' => 'fve', 'FvH4_2g04890' => 'fve', 'FvH4_2g22270' => 'fve', 'FvH4_4g02630' => 'fve', 'FvH4_4g02640' => 'fve', 'FvH4_6g02650' => 'fve', 'Glyma.02G140600' => 'gma', 'Glyma.03G159900' => 'gma', 'Glyma.05G234800' => 'gma', 'Glyma.07G269600' => 'gma', 'Glyma.08G042300' => 'gma', 'Glyma.10G033500' => 'gma', 'Glyma.10G185200' => 'gma', 'Glyma.17G004300' => 'gma', 'Glyma.19G161900' => 'gma', 'Glyma.20G205100' => 'gma', 'Glyma.20G205200' => 'gma', 'Gohir.A01G139101' => 'ghi', 'Gohir.A02G035600' => 'ghi', 'Gohir.A02G117901' => 'ghi', 'Gohir.A07G210100' => 'ghi', 'Gohir.A07G210200' => 'ghi', 'Gohir.A08G061100' => 'ghi', 'Gohir.A09G223000' => 'ghi', 'Gohir.A09G223100' => 'ghi', 'Gohir.A10G113900' => 'ghi', 'Gohir.A10G114000' => 'ghi', 'Gohir.D02G042300' => 'ghi', 'Gohir.D07G216100' => 'ghi', 'Gohir.D07G216200' => 'ghi', 'Gohir.D08G070400' => 'ghi', 'Gohir.D09G225000' => 'ghi', 'Gohir.D09G225100' => 'ghi', 'Gohir.D10G152300' => 'ghi', 'Gohir.D10G153200' => 'ghi', 'Gohir.D11G133701' => 'ghi', 'Gorai.004G074100' => 'gra', 'Gorai.005G046800' => 'gra', 'Gorai.006G246500' => 'gra', 'Gorai.006G246600' => 'gra', 'Gorai.007G142900' => 'gra', 'Gorai.011G171000' => 'gra', 'Gorai.011G171100' => 'gra', 'Gorai.013G104300' => 'gra', 'Gorai.013G104400' => 'gra', 'GSVIVG01000754001' => 'vvi', 'GSVIVG01000756001' => 'vvi', 'GSVIVG01010903001' => 'vvi', 'GSVIVG01017623001' => 'vvi', 'GSVIVG01018113001' => 'vvi', 'GSVIVG01018116001' => 'vvi', 'GSVIVG01018118001' => 'vvi', 'HanXRQChr03g0076211' => 'han', 'HanXRQChr03g0092431' => 'han', 'HanXRQChr03g0092441' => 'han', 'HanXRQChr03g0092591' => 'han', 'HanXRQChr03g0092671' => 'han', 'HanXRQChr03g0092681' => 'han', 'HanXRQChr03g0092691' => 'han', 'HanXRQChr03g0092701' => 'han', 'HanXRQChr03g0092721' => 'han', 'HanXRQChr03g0092731' => 'han', 'HanXRQChr04g0113681' => 'han', 'HanXRQChr10g0281371' => 'han', 'HanXRQChr11g0337141' => 'han', 'HanXRQChr13g0424521' => 'han', 'HanXRQChr13g0424531' => 'han', 'HanXRQChr13g0424541' => 'han', 'HanXRQChr16g0498221' => 'han', 'Haze_04377' => 'cav', 'Haze_11298' => 'cav', 'Haze_24547' => 'cav', 'Haze_24550' => 'cav', 'Haze_26587' => 'cav', 'Hma1.2p1_0650F.1_g195410' => 'hma', 'Hma1.2p1_0893F.1_g233470' => 'hma', 'HPP92_006508' => 'vpl', 'HPP92_024780' => 'vpl', 'Hund02688' => 'sun', 'Hund09380' => 'sun', 'Hund09381' => 'sun', 'Hund09832' => 'sun', 'Hund09833' => 'sun', 'Hund11351' => 'sun', 'Hund11513' => 'sun', 'Lalb_Chr06g0162591' => 'lal', 'Lalb_Chr06g0162601' => 'lal', 'Lalb_Chr06g0169321' => 'lal', 'Lalb_Chr09g0330951' => 'lal', 'Lalb_Chr16g0387631' => 'lal', 'Lalb_Chr21g0306241' => 'lal', 'Lalb_Chr25g0290051' => 'lal', 'Lalb_Chr25g0290061' => 'lal', 'Lalb_Chr25g0290071' => 'lal', 'Lj1g0003876' => 'lja', 'Lj1P1207T36' => 'lonja', 'Lj2C1156G12' => 'lonja', 'Lj3A793G39' => 'lonja', 'Lj3C580G2' => 'lonja', 'Lj3C780G2' => 'lonja', 'Lj3C780T4' => 'lonja', 'Lj3C793G9' => 'lonja', 'Lj4g0012960' => 'lja', 'Lj5g0021252' => 'lja', 'Lj5g0021484' => 'lja', 'Lj5g0024528' => 'lja', 'Lj6A399T12' => 'lonja', 'Lj6A656G65' => 'lonja', 'Lsat_1_v5_gn_3_125500' => 'lsa', 'Lsat_1_v5_gn_3_125540' => 'lsa', 'Lsat_1_v5_gn_5_72701' => 'lsa', 'Lsat_1_v5_gn_8_91560' => 'lsa', 'Lsat_1_v5_gn_9_9640' => 'lsa', 'Manes.01G200600' => 'mes', 'Manes.01G200700' => 'mes', 'Manes.03G168900' => 'mes', 'Manes.03G169000' => 'mes', 'Manes.05G085801' => 'mes', 'Manes.05G086200' => 'mes', 'Manes.15G036700' => 'mes', 'Manes.15G036900' => 'mes', 'Mapoly0004s0172' => 'mpo', 'Mapoly0023s0001' => 'mpo', 'Mapoly0142s0012' => 'mpo', 'MBI01_g32854_MAGBIO' => 'mbi', 'MBI11_g24427_MAGBIO' => 'mbi', 'MBI11_g47319_MAGBIO' => 'mbi', 'MCO01G433' => 'mco', 'MD00G1187800' => 'mdo', 'MD04G1226500' => 'mdo', 'MD05G1203900' => 'mdo', 'MD10G1191100' => 'mdo', 'MD12G1243500' => 'mdo', 'MD13G1207000' => 'mdo', 'MD13G1207100' => 'mdo', 'MD16G1208600' => 'mdo', 'Medtr1g050352' => 'mtr', 'Medtr1g070385' => 'mtr', 'Medtr1g070450' => 'mtr', 'Medtr1g075200' => 'mtr', 'Medtr1g075250' => 'mtr', 'Medtr1g075260' => 'mtr', 'Medtr1g475250' => 'mtr', 'Medtr4g075450' => 'mtr', 'Medtr7g096300' => 'mtr', 'Medtr8g105110' => 'mtr', 'MELO3C006470.2' => 'cme', 'MELO3C006471.2' => 'cme', 'MELO3C020772.2' => 'cme', 'MELO3C026780.2' => 'cme', 'MELO3C026781.2' => 'cme', 'Migut.D00390' => 'egut', 'Migut.G00435' => 'egut', 'Migut.G00436' => 'egut', 'Migut.G00718' => 'egut', 'MSTRG.21891' => 'ama', 'MSTRG.26910' => 'ama', 'MSTRG.4099' => 'ama', 'MSTRG.9925' => 'ama', 'Nitab4.5_0000165g0010' => 'nta', 'Nitab4.5_0000209g0180' => 'nta', 'Nitab4.5_0000244g0440' => 'nta', 'Nitab4.5_0000525g0220' => 'nta', 'Nitab4.5_0001597g0020' => 'nta', 'Nitab4.5_0001878g0040' => 'nta', 'Nitab4.5_0001878g0060' => 'nta', 'Nitab4.5_0002838g0100' => 'nta', 'Nitab4.5_0002838g0120' => 'nta', 'Nitab4.5_0004798g0030' => 'nta', 'Nitab4.5_0005420g0010' => 'nta', 'Nitab4.5_0005507g0010' => 'nta', 'Nitab4.5_0005574g0020' => 'nta', 'Nitab4.5_0005838g0010' => 'nta', 'Nitab4.5_0010580g0020' => 'nta', 'Nn1g02599' => 'nnu', 'Nn1g02608' => 'nnu', 'Nn3g17742' => 'nnu', 'Nn3g19534' => 'nnu', 'Nn3g19535' => 'nnu', 'Oeu008790.1' => 'oeu', 'Oeu008792.1' => 'oeu', 'Oeu032590.1' => 'oeu', 'Oeu035349.1' => 'oeu', 'Oeu049791.1' => 'oeu', 'Os01g0774500' => 'osa', 'Os03g0628800' => 'osa', 'Os03g0798600' => 'osa', 'Os05g0508800' => 'osa', 'Peaxi162Scf00036g02018' => 'pax', 'Peaxi162Scf00578g00032' => 'pax', 'Peaxi162Scf00578g00317' => 'pax', 'Peaxi162Scf00785g00114' => 'pax', 'Peaxi162Scf00813g00119' => 'pax', 'Peaxi162Scf00906g00227' => 'pax', 'PGR004G0875' => 'pgr', 'PGR004G2424' => 'pgr', 'PGR031G1239' => 'pgr', 'PGR031G2474' => 'pgr', 'PGR044G0423' => 'pgr', 'PGSC0003DMG400001128' => 'stu', 'PGSC0003DMG400007336' => 'stu', 'PGSC0003DMG400016318' => 'stu', 'PGSC0003DMG400016319' => 'stu', 'PGSC0003DMG400018074' => 'stu', 'Phvul.001G157700' => 'pvu', 'Phvul.002G148550' => 'pvu', 'Phvul.002G320200' => 'pvu', 'Phvul.003G089200' => 'pvu', 'Phvul.007G126000' => 'pvu', 'Phvul.007G126100' => 'pvu', 'Phvul.007G178000' => 'pvu', 'Phvul.007G178200' => 'pvu', 'Potri.002G043000' => 'ptr', 'Potri.002G043200' => 'ptr', 'Potri.003G123750' => 'ptr', 'Potri.005G055401' => 'ptr', 'Potri.005G219700' => 'ptr', 'Potri.005G220000' => 'ptr', 'Potri.008G161901' => 'ptr', 'Potri.008G162000' => 'ptr', 'Potri.008G162400' => 'ptr', 'Potri.010G076900' => 'ptr', 'Pp3c12_9180' => 'ppa', 'Pp3c13_19770' => 'ppa', 'Pp3c14_22950' => 'ppa', 'Pp3c16_12160' => 'ppa', 'Pp3c27_7820' => 'ppa', 'Pp3c2_3490' => 'ppa', 'Pp3c3_23700' => 'ppa', 'Pp3c3_36520' => 'ppa', 'Pp3c4_15250' => 'ppa', 'PRCOL_00007002' => 'pco', 'Prupe.1G030600' => 'ppe', 'Prupe.1G030700' => 'ppe', 'Prupe.6G345200' => 'ppe', 'Prupe.8G230300' => 'ppe', 'Prupe.8G230500' => 'ppe', 'Psat3g059600' => 'psa', 'Psat5g200920' => 'psa', 'Psat6g056440' => 'psa', 'Psat6g057360' => 'psa', 'Psat6g134120' => 'psa', 'Psat6g134160' => 'psa', 'Psat7g008640' => 'psa', 'Psat7g185240' => 'psa', 'PSO017G1330' => 'pso', 'PSO063G6097' => 'pso', 'PSO170G0835' => 'pso', 'PSO170G2499' => 'pso', 'PSO210G5058' => 'pso', 'PSO210G6154' => 'pso', 'PSO585G0031' => 'pso', 'PSO832G0264' => 'pso', 'PSO832G4288' => 'pso', 'QL03p027355' => 'qlo', 'QL03p027430' => 'qlo', 'QL04p081380' => 'qlo', 'QL06p015642' => 'qlo', 'QL06p015650' => 'qlo', 'QL06p015686' => 'qlo', 'QL12p042927' => 'qlo', 'QL93p1863_0035' => 'qlo', 'RcHm_v2.0_Chr3g0450581' => 'rch', 'RcHm_v2.0_Chr4g0390371' => 'rch', 'RcHm_v2.0_Chr4g0390381' => 'rch', 'RcHm_v2.0_Chr4g0390491' => 'rch', 'RcHm_v2.0_Chr4g0390501' => 'rch', 'RcHm_v2.0_Chr6g0289231' => 'rch', 'Rhsim04G0190400' => 'rsi', 'Rhsim04G0190500' => 'rsi', 'Rhsim04G0190600' => 'rsi', 'Rhsim13G0031400' => 'rsi', 'Rhsim13G0165600' => 'rsi', 'RhsimUnG0114600' => 'rsi', 'RhsimUnG0114700' => 'rsi', 'Sabra02G0034800' => 'sbr', 'Sabra02G0035100' => 'sbr', 'Sabra05G0168600' => 'sbr', 'Sabra05G0168800' => 'sbr', 'Sabra08G0123700' => 'sbr', 'Sabra10G0031900' => 'sbr', 'Sabra13G0039000' => 'sbr', 'SalBow2G0782' => 'sbo', 'SalBow2G1403' => 'sbo', 'SalBow4G0074' => 'sbo', 'SalBow4G2635' => 'sbo', 'SalBow5G3010' => 'sbo', 'Sc05g0000870' => 'sci', 'Sc05g0000890' => 'sci', 'Sc13g0005000' => 'sci', 'Sc13g0005030' => 'sci', 'Sc19g0003790' => 'sci', 'Sc19g0003800' => 'sci', 'Sed0003467' => 'sed', 'Sed0009355' => 'sed', 'Sed0009894' => 'sed', 'Sed0011972' => 'sed', 'Sed0021483' => 'sed', 'Sed0021750' => 'sed', 'Sed0026279' => 'sed', 'SEGI_05312' => 'sgi', 'SEGI_10112' => 'sgi', 'SEGI_15835' => 'sgi', 'SEGI_30386' => 'sgi', 'SEGI_34122' => 'sgi', 'SEGI_35063' => 'sgi', 'SGA_v2.0_scaffold101G29794' => 'sas', 'SGA_v2.0_scaffold1G00573' => 'sas', 'SGA_v2.0_scaffold79G25637' => 'sas', 'SGA_v2.0_scaffold88G27283' => 'sas', 'SGA_v2.0_scaffold88G27285' => 'sas', 'SGA_v2.0_scaffold88G27331' => 'sas', 'SHI09937' => 'shi', 'SMO119G0302' => 'smo', 'SMO137G0231' => 'smo', 'SMO367G1151' => 'smo', 'Solyc02g082000.3' => 'sly', 'Solyc06g031670.3' => 'sly', 'Solyc06g053810.3' => 'sly', 'Solyc07g025457.1' => 'sly', 'Solyc08g059740.1' => 'sly', 'Solyc08g059750.3' => 'sly', 'Solyc09g083370.3' => 'sly', 'Solyc12g038950.3' => 'sly', 'Sopen02g026630' => 'spe', 'Sopen06g018930' => 'spe', 'Sopen06g018940' => 'spe', 'Sopen08g009460' => 'spe', 'Sopen09g032290' => 'spe', 'Sp1g03080' => 'spa', 'Sp1g03090' => 'spa', 'Sp1g05480' => 'spa', 'Sp2g07860' => 'spa', 'Sp2g08430' => 'spa', 'Sp2g08440' => 'spa', 'Sp2g26200' => 'spa', 'Sp4g13170' => 'spa', 'Sp6g33840' => 'spa', 'SpUn1204_0010' => 'spa', 'TAR365G0908' => 'tar', 'TAR381G1270' => 'tar', 'TAR381G1651' => 'tar', 'TAR625G1131' => 'tar', 'TAR633G0962' => 'tar', 'TAR633G1729' => 'tar', 'TAR633G1864' => 'tar', 'TAR636G0221' => 'tar', 'TAR636G0314' => 'tar', 'TAR636G3202' => 'tar', 'THA.LOC104800805' => 'tha', 'THA.LOC104801096' => 'tha', 'THA.LOC104801555' => 'tha', 'THA.LOC104808491' => 'tha', 'THA.LOC104808595' => 'tha', 'THA.LOC104815985' => 'tha', 'THA.LOC104822250' => 'tha', 'THA.LOC104826071' => 'tha', 'Thecc.01G265200' => 'tca', 'Thecc.01G265300' => 'tca', 'Thecc.01G265700' => 'tca', 'Thecc.03G109100' => 'tca', 'Thecc.04G245900' => 'tca', 'Thecc.04G246000' => 'tca', 'Thhalv10003334m.g' => 'esa', 'Thhalv10005508m.g' => 'esa', 'Thhalv10005643m.g' => 'esa', 'Thhalv10007316m.g' => 'esa', 'Thhalv10009006m.g' => 'esa', 'Thhalv10009309m.g' => 'esa', 'Thhalv10014917m.g' => 'esa', 'Thhalv10014919m.g' => 'esa', 'Thhalv10015393m.g' => 'esa', 'Thhalv10016515m.g' => 'esa', 'Thhalv10029242m.g' => 'esa', 'TPR.G16654' => 'tpr', 'TPR.G20589' => 'tpr', 'TPR.G23029' => 'tpr', 'TPR.G27731' => 'tpr', 'TPR.G28889' => 'tpr', 'TPR.G28899' => 'tpr', 'TPR.G30846' => 'tpr', 'TPR.G5452' => 'tpr', 'TPR.G5713' => 'tpr', 'TPR.G9046' => 'tpr', 'TPR.G9061' => 'tpr', 'TWI09G1075' => 'twi', 'TWI12G0806' => 'twi', 'TWI18G0108' => 'twi', 'TWI53G1361' => 'twi', 'TWI73G0185' => 'twi', 'TWI73G0427' => 'twi', 'unitig_37.g12001' => 'ugi', 'unitig_747.g21660' => 'ugi', 'unitig_748.g7232' => 'ugi', 'unitig_748.g7315' => 'ugi', 'unitig_85.g27262' => 'ugi', 'unitig_92.g28220' => 'ugi', 'vmacro02632' => 'vma', 'vmacro08410' => 'vma', 'vmacro08411' => 'vma', 'vmacro15407' => 'vma', 'VMungo0251G3619' => 'vmu', 'VMungo0720G1204' => 'vmu', 'VMungo0720G1918' => 'vmu', 'VMungo0720G2387' => 'vmu', 'VMungo0720G2961' => 'vmu', 'VMungo1215G2154' => 'vmu', 'VMungo1383G2411' => 'vmu', 'Zm00001eb051130' => 'zma', 'Zm00001eb116830' => 'zma', 'Zm00001eb116850' => 'zma', 'Zm00001eb151740' => 'zma', 'Zm00001eb292360' => 'zma', 'Zm00001eb301640' => 'zma' ), 'gf_id' => 'HOM05D000856', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000856' ), 'data_identifier' => 'HOM05D000856', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000856', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p00010' => 'bna', 'A03p04160' => 'bna', 'A03p17160' => 'bna', 'A04p23370' => 'bna', 'A05p14860' => 'bna', 'A08p37020' => 'bna', 'A09p08050' => 'bna', 'A09p66800' => 'bna', 'A09p67940' => 'bna', 'A10p02680' => 'bna', 'A10p05320' => 'bna', 'Aa31LG1G20560' => 'aar', 'Aa31LG1G20610' => 'aar', 'Aa31LG1G7810' => 'aar', 'Aa31LG5G3590' => 'aar', 'Aa31LG5G6140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3819' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4683' => 'aag', 'Actinidia04480' => 'ach', 'Actinidia05466' => 'ach', 'Actinidia08445' => 'ach', 'Actinidia21170' => 'ach', 'Actinidia24812' => 'ach', 'Actinidia24951' => 'ach', 'Actinidia40088' => 'ach', 'Ah.02g111660' => 'amhyb', 'Ah.11g048900' => 'amhyb', 'Ah.11g049910' => 'amhyb', 'AL1G13870' => 'aly', 'AL1G13880' => 'aly', 'AL1G16760' => 'aly', 'AL390U10020' => 'aly', 'AL4G25520' => 'aly', 'AL6G19890' => 'aly', 'AL6G19900' => 'aly', 'AL6G19910' => 'aly', 'AL8G40100' => 'aly', 'Aqoxy2G03562' => 'aox', 'Aqoxy5G00316' => 'aox', 'Aqoxy5G00926' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1628KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1H403S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2FU6SJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.882I6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8YRY2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YN1SN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AF70II' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZA8L1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F916KL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHRD8H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KTZ8QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S22EMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8M29T' => 'arhy', 'AT1G04270' => 'ath', 'AT1G04280' => 'ath', 'AT1G06750' => 'ath', 'AT1G33850' => 'ath', 'AT2G30630' => 'ath', 'AT5G09490' => 'ath', 'AT5G09500' => 'ath', 'AT5G09510' => 'ath', 'AT5G43640' => 'ath', 'AT5G63070' => 'ath', 'ATR0605G315' => 'atr', 'Atru.chr11.175' => 'acertr', 'Atru.chr11.653' => 'acertr', 'Atru.chr3.1616' => 'acertr', 'Atru.chr4.2230' => 'acertr', 'Atru.chr4.2232' => 'acertr', 'Atru.chr5.1598' => 'acertr', 'Atru.chr5.1600' => 'acertr', 'Atru.chr5.2188' => 'acertr', 'AUR62008326' => 'cqu', 'AUR62011922' => 'cqu', 'AUR62011924' => 'cqu', 'AUR62021771' => 'cqu', 'AUR62032237' => 'cqu', 'AUR62032240' => 'cqu', 'BcaB01g05572' => 'bca', 'BcaB02g10337' => 'bca', 'BcaB04g19944' => 'bca', 'BcaB05g21548' => 'bca', 'BcaB05g21549' => 'bca', 'BcaB05g23227' => 'bca', 'BcaB06g26256' => 'bca', 'BcaB06g26257' => 'bca', 'BcaB06g28379' => 'bca', 'BcaC02g11159' => 'bca', 'BcaC03g13258' => 'bca', 'BcaC03g13259' => 'bca', 'BcaC05g24456' => 'bca', 'BcaC05g24457' => 'bca', 'BcaC07g36922' => 'bca', 'BcaC07g36923' => 'bca', 'BcaC07g42050' => 'bca', 'BcaC07g42176' => 'bca', 'BcaC07g42195' => 'bca', 'BcaC07g42196' => 'bca', 'BcaNung06674' => 'bca', 'BolC2t06351H' => 'bol', 'BolC2t06352H' => 'bol', 'BolC3t12993H' => 'bol', 'BolC4t23525H' => 'bol', 'BolC4t27475H' => 'bol', 'BolC5t29025H' => 'bol', 'BolC5t29026H' => 'bol', 'BolC8t46898H' => 'bol', 'BolC8t46899H' => 'bol', 'BolC8t52630H' => 'bol', 'BolC8t52765H' => 'bol', 'BolC9t53824H' => 'bol', 'BraA03t09760Z' => 'bra', 'BraA03t10990Z' => 'bra', 'BraA05t20413Z' => 'bra', 'BraA08t35602Z' => 'bra', 'BraA09t36458Z' => 'bra', 'BraA09t42018Z' => 'bra', 'BraA09t42129Z' => 'bra', 'BraA10t42536Z' => 'bra', 'BraA10t42537Z' => 'bra', 'C01p10690' => 'bna', 'C02p03890' => 'bna', 'C02p03900' => 'bna', 'C03p04620' => 'bna', 'C04p19870' => 'bna', 'C04p59670' => 'bna', 'C05p02460' => 'bna', 'C05p02470' => 'bna', 'C08p00980' => 'bna', 'C08p00990' => 'bna', 'C08p51030' => 'bna', 'C08p52360' => 'bna', 'C09p09120' => 'bna', 'CAN.G19.15' => 'can', 'CAN.G251.10' => 'can', 'CAN.G251.9' => 'can', 'CAN.G398.24' => 'can', 'CAN.G410.32' => 'can', 'CAN.G881.2' => 'can', 'CANSAT01G3025' => 'cansat', 'CANSAT78G1211' => 'cansat', 'CANSAT78G1218' => 'cansat', 'CANSAT78G1521' => 'cansat', 'CANSAT78G1670' => 'cansat', 'CARHR003600' => 'chi', 'CARHR003610' => 'chi', 'CARHR006290' => 'chi', 'CARHR006430' => 'chi', 'CARHR124110' => 'chi', 'CARHR203870' => 'chi', 'CARHR203880' => 'chi', 'CARHR203890' => 'chi', 'CARHR276880' => 'chi', 'Carub.0001s0346' => 'cru', 'Carub.0001s0347' => 'cru', 'Carub.0001s0607' => 'cru', 'Carub.0003s2768' => 'cru', 'Carub.0003s2769' => 'cru', 'Carub.0004s1178' => 'cru', 'Carub.0006s0806' => 'cru', 'Carub.0006s0807' => 'cru', 'Carub.0006s0808' => 'cru', 'Carub.0008s0501' => 'cru', 'Carub.0008s2379' => 'cru', 'Ca_08655_v3' => 'car', 'Ca_08922_v3' => 'car', 'Ca_08923_v3' => 'car', 'Ca_09119_v3' => 'car', 'Ca_09703_v3' => 'car', 'Ca_09705_v3' => 'car', 'Ca_09835_v3' => 'car', 'Ca_26403_v3' => 'car', 'Ca_30719_v3' => 'car', 'CBR_g17958' => 'cbr', 'CBR_g40516' => 'cbr', 'Cc00_g05350' => 'ccan', 'Cc01_g18690' => 'ccan', 'Cc03_g04830' => 'ccan', 'Cc03_g04850' => 'ccan', 'CDE02G4469' => 'cde', 'CDE06G0883' => 'cde', 'CDE06G1295' => 'cde', 'CDE06G1390' => 'cde', 'CDE07G0584' => 'cde', 'CDE07G1084' => 'cde', 'CDE08G1259' => 'cde', 'Cfa002341' => 'cfa', 'Cfa024337' => 'cfa', 'Ciclev10004749m.g' => 'ccl', 'Ciclev10006127m.g' => 'ccl', 'Ciclev10019720m.g' => 'ccl', 'Ciclev10022652m.g' => 'ccl', 'CiPaw.01G190400' => 'cil', 'CiPaw.01G190500' => 'cil', 'CiPaw.02G116400' => 'cil', 'CiPaw.02G116500' => 'cil', 'CiPaw.04G183000' => 'cil', 'CiPaw.04G183300' => 'cil', 'ClCG05G004610' => 'cla', 'ClCG05G004620' => 'cla', 'ClCG06G006730' => 'cla', 'ClCG06G006740' => 'cla', 'ClCG11G003690' => 'cla', 'COL.COLO4_08276' => 'col', 'COL.COLO4_08277' => 'col', 'COL.COLO4_15787' => 'col', 'COL.COLO4_15789' => 'col', 'Cpa.g.c44815' => 'cpa', 'Cpa.g.sc52.144' => 'cpa', 'Cpa.g.sc58.46' => 'cpa', 'Cpa.g.sc58.47' => 'cpa', 'Cre08.g360900' => 'cre', 'CsaV3_2G013030' => 'csa', 'CsaV3_2G013050' => 'csa', 'CsaV3_2G015620' => 'csa', 'CsaV3_3G012590' => 'csa', 'CsaV3_3G012600' => 'csa', 'CSS0001641' => 'camsi', 'CSS0008310' => 'camsi', 'CSS0013011' => 'camsi', 'CSS0017147' => 'camsi', 'CSS0022970' => 'camsi', 'CSS0025655' => 'camsi', 'CSS0028665' => 'camsi', 'CSS0029117' => 'camsi', 'CSS0032024' => 'camsi', 'CSS0039681' => 'camsi', 'CSS0046516' => 'camsi', 'CSS0050307' => 'camsi', 'DCAR_005871' => 'dca', 'DCAR_007342' => 'dca', 'DCAR_024228' => 'dca', 'DCAR_027277' => 'dca', 'DCAR_030718' => 'dca', 'Dinv20287' => 'din', 'Dinv22461' => 'din', 'Dinv22464' => 'din', 'Dinv29912' => 'din', 'Dinv29913' => 'din', 'Dinv34580' => 'din', 'Dinv34582' => 'din', 'Dinv44632' => 'din', 'Duzib052G0266' => 'dzi', 'Duzib133G0907' => 'dzi', 'Duzib133G1034' => 'dzi', 'Duzib138G0207' => 'dzi', 'Duzib138G0491' => 'dzi', 'Duzib151G0812' => 'dzi', 'Duzib151G1166' => 'dzi', 'Duzib168G0192' => 'dzi', 'Duzib211G0077' => 'dzi', 'Duzib212G0429' => 'dzi', 'Duzib212G0472' => 'dzi', 'ECA233G2617' => 'eca', 'ECA236G4188' => 'eca', 'ECA240G0936' => 'eca', 'ECA240G1129' => 'eca', 'ECA247G0623' => 'eca', 'EL10Ac5g10451' => 'bvu', 'EL10Ac5g10453' => 'bvu', 'EL10Ac5g10894' => 'bvu', 'Eucgr.H00192' => 'egr', 'Eucgr.H00193' => 'egr', 'Eucgr.H00194' => 'egr', 'Eucgr.J01562' => 'egr', 'Eucgr.K03301' => 'egr', 'FAN02G0632' => 'fan', 'FAN05G5378' => 'fan', 'FAN09G3247' => 'fan', 'FAN12G0435' => 'fan', 'FAN12G2426' => 'fan', 'FAN14G1707' => 'fan', 'FAN14G4725' => 'fan', 'FAN15G2071' => 'fan', 'FAN17G3065' => 'fan', 'FAN19G1376' => 'fan', 'FAN20G0354' => 'fan', 'FAN20G2429' => 'fan', 'FAN20G2658' => 'fan', 'FAN24G2343' => 'fan', 'FAN27G2362' => 'fan', 'FAN28G1765' => 'fan', 'FvH4_1g16020' => 'fve', 'FvH4_2g04890' => 'fve', 'FvH4_2g22270' => 'fve', 'FvH4_4g02630' => 'fve', 'FvH4_4g02640' => 'fve', 'FvH4_6g02650' => 'fve', 'Glyma.02G140600' => 'gma', 'Glyma.03G159900' => 'gma', 'Glyma.05G234800' => 'gma', 'Glyma.07G269600' => 'gma', 'Glyma.08G042300' => 'gma', 'Glyma.10G033500' => 'gma', 'Glyma.10G185200' => 'gma', 'Glyma.17G004300' => 'gma', 'Glyma.19G161900' => 'gma', 'Glyma.20G205100' => 'gma', 'Glyma.20G205200' => 'gma', 'Gohir.A01G139101' => 'ghi', 'Gohir.A02G035600' => 'ghi', 'Gohir.A02G117901' => 'ghi', 'Gohir.A07G210100' => 'ghi', 'Gohir.A07G210200' => 'ghi', 'Gohir.A08G061100' => 'ghi', 'Gohir.A09G223000' => 'ghi', 'Gohir.A09G223100' => 'ghi', 'Gohir.A10G113900' => 'ghi', 'Gohir.A10G114000' => 'ghi', 'Gohir.D02G042300' => 'ghi', 'Gohir.D07G216100' => 'ghi', 'Gohir.D07G216200' => 'ghi', 'Gohir.D08G070400' => 'ghi', 'Gohir.D09G225000' => 'ghi', 'Gohir.D09G225100' => 'ghi', 'Gohir.D10G152300' => 'ghi', 'Gohir.D10G153200' => 'ghi', 'Gohir.D11G133701' => 'ghi', 'Gorai.004G074100' => 'gra', 'Gorai.005G046800' => 'gra', 'Gorai.006G246500' => 'gra', 'Gorai.006G246600' => 'gra', 'Gorai.007G142900' => 'gra', 'Gorai.011G171000' => 'gra', 'Gorai.011G171100' => 'gra', 'Gorai.013G104300' => 'gra', 'Gorai.013G104400' => 'gra', 'GSVIVG01000754001' => 'vvi', 'GSVIVG01000756001' => 'vvi', 'GSVIVG01010903001' => 'vvi', 'GSVIVG01017623001' => 'vvi', 'GSVIVG01018113001' => 'vvi', 'GSVIVG01018116001' => 'vvi', 'GSVIVG01018118001' => 'vvi', 'HanXRQChr03g0076211' => 'han', 'HanXRQChr03g0092431' => 'han', 'HanXRQChr03g0092441' => 'han', 'HanXRQChr03g0092591' => 'han', 'HanXRQChr03g0092671' => 'han', 'HanXRQChr03g0092681' => 'han', 'HanXRQChr03g0092691' => 'han', 'HanXRQChr03g0092701' => 'han', 'HanXRQChr03g0092721' => 'han', 'HanXRQChr03g0092731' => 'han', 'HanXRQChr04g0113681' => 'han', 'HanXRQChr10g0281371' => 'han', 'HanXRQChr11g0337141' => 'han', 'HanXRQChr13g0424521' => 'han', 'HanXRQChr13g0424531' => 'han', 'HanXRQChr13g0424541' => 'han', 'HanXRQChr16g0498221' => 'han', 'Haze_04377' => 'cav', 'Haze_11298' => 'cav', 'Haze_24547' => 'cav', 'Haze_24550' => 'cav', 'Haze_26587' => 'cav', 'Hma1.2p1_0650F.1_g195410' => 'hma', 'Hma1.2p1_0893F.1_g233470' => 'hma', 'HPP92_006508' => 'vpl', 'HPP92_024780' => 'vpl', 'Hund02688' => 'sun', 'Hund09380' => 'sun', 'Hund09381' => 'sun', 'Hund09832' => 'sun', 'Hund09833' => 'sun', 'Hund11351' => 'sun', 'Hund11513' => 'sun', 'Lalb_Chr06g0162591' => 'lal', 'Lalb_Chr06g0162601' => 'lal', 'Lalb_Chr06g0169321' => 'lal', 'Lalb_Chr09g0330951' => 'lal', 'Lalb_Chr16g0387631' => 'lal', 'Lalb_Chr21g0306241' => 'lal', 'Lalb_Chr25g0290051' => 'lal', 'Lalb_Chr25g0290061' => 'lal', 'Lalb_Chr25g0290071' => 'lal', 'Lj1g0003876' => 'lja', 'Lj1P1207T36' => 'lonja', 'Lj2C1156G12' => 'lonja', 'Lj3A793G39' => 'lonja', 'Lj3C580G2' => 'lonja', 'Lj3C780G2' => 'lonja', 'Lj3C780T4' => 'lonja', 'Lj3C793G9' => 'lonja', 'Lj4g0012960' => 'lja', 'Lj5g0021252' => 'lja', 'Lj5g0021484' => 'lja', 'Lj5g0024528' => 'lja', 'Lj6A399T12' => 'lonja', 'Lj6A656G65' => 'lonja', 'Lsat_1_v5_gn_3_125500' => 'lsa', 'Lsat_1_v5_gn_3_125540' => 'lsa', 'Lsat_1_v5_gn_5_72701' => 'lsa', 'Lsat_1_v5_gn_8_91560' => 'lsa', 'Lsat_1_v5_gn_9_9640' => 'lsa', 'Manes.01G200600' => 'mes', 'Manes.01G200700' => 'mes', 'Manes.03G168900' => 'mes', 'Manes.03G169000' => 'mes', 'Manes.05G085801' => 'mes', 'Manes.05G086200' => 'mes', 'Manes.15G036700' => 'mes', 'Manes.15G036900' => 'mes', 'Mapoly0004s0172' => 'mpo', 'Mapoly0023s0001' => 'mpo', 'Mapoly0142s0012' => 'mpo', 'MBI01_g32854_MAGBIO' => 'mbi', 'MBI11_g24427_MAGBIO' => 'mbi', 'MBI11_g47319_MAGBIO' => 'mbi', 'MCO01G433' => 'mco', 'MD00G1187800' => 'mdo', 'MD04G1226500' => 'mdo', 'MD05G1203900' => 'mdo', 'MD10G1191100' => 'mdo', 'MD12G1243500' => 'mdo', 'MD13G1207000' => 'mdo', 'MD13G1207100' => 'mdo', 'MD16G1208600' => 'mdo', 'Medtr1g050352' => 'mtr', 'Medtr1g070385' => 'mtr', 'Medtr1g070450' => 'mtr', 'Medtr1g075200' => 'mtr', 'Medtr1g075250' => 'mtr', 'Medtr1g075260' => 'mtr', 'Medtr1g475250' => 'mtr', 'Medtr4g075450' => 'mtr', 'Medtr7g096300' => 'mtr', 'Medtr8g105110' => 'mtr', 'MELO3C006470.2' => 'cme', 'MELO3C006471.2' => 'cme', 'MELO3C020772.2' => 'cme', 'MELO3C026780.2' => 'cme', 'MELO3C026781.2' => 'cme', 'Migut.D00390' => 'egut', 'Migut.G00435' => 'egut', 'Migut.G00436' => 'egut', 'Migut.G00718' => 'egut', 'MSTRG.21891' => 'ama', 'MSTRG.26910' => 'ama', 'MSTRG.4099' => 'ama', 'MSTRG.9925' => 'ama', 'Nitab4.5_0000165g0010' => 'nta', 'Nitab4.5_0000209g0180' => 'nta', 'Nitab4.5_0000244g0440' => 'nta', 'Nitab4.5_0000525g0220' => 'nta', 'Nitab4.5_0001597g0020' => 'nta', 'Nitab4.5_0001878g0040' => 'nta', 'Nitab4.5_0001878g0060' => 'nta', 'Nitab4.5_0002838g0100' => 'nta', 'Nitab4.5_0002838g0120' => 'nta', 'Nitab4.5_0004798g0030' => 'nta', 'Nitab4.5_0005420g0010' => 'nta', 'Nitab4.5_0005507g0010' => 'nta', 'Nitab4.5_0005574g0020' => 'nta', 'Nitab4.5_0005838g0010' => 'nta', 'Nitab4.5_0010580g0020' => 'nta', 'Nn1g02599' => 'nnu', 'Nn1g02608' => 'nnu', 'Nn3g17742' => 'nnu', 'Nn3g19534' => 'nnu', 'Nn3g19535' => 'nnu', 'Oeu008790.1' => 'oeu', 'Oeu008792.1' => 'oeu', 'Oeu032590.1' => 'oeu', 'Oeu035349.1' => 'oeu', 'Oeu049791.1' => 'oeu', 'Os01g0774500' => 'osa', 'Os03g0628800' => 'osa', 'Os03g0798600' => 'osa', 'Os05g0508800' => 'osa', 'Peaxi162Scf00036g02018' => 'pax', 'Peaxi162Scf00578g00032' => 'pax', 'Peaxi162Scf00578g00317' => 'pax', 'Peaxi162Scf00785g00114' => 'pax', 'Peaxi162Scf00813g00119' => 'pax', 'Peaxi162Scf00906g00227' => 'pax', 'PGR004G0875' => 'pgr', 'PGR004G2424' => 'pgr', 'PGR031G1239' => 'pgr', 'PGR031G2474' => 'pgr', 'PGR044G0423' => 'pgr', 'PGSC0003DMG400001128' => 'stu', 'PGSC0003DMG400007336' => 'stu', 'PGSC0003DMG400016318' => 'stu', 'PGSC0003DMG400016319' => 'stu', 'PGSC0003DMG400018074' => 'stu', 'Phvul.001G157700' => 'pvu', 'Phvul.002G148550' => 'pvu', 'Phvul.002G320200' => 'pvu', 'Phvul.003G089200' => 'pvu', 'Phvul.007G126000' => 'pvu', 'Phvul.007G126100' => 'pvu', 'Phvul.007G178000' => 'pvu', 'Phvul.007G178200' => 'pvu', 'Potri.002G043000' => 'ptr', 'Potri.002G043200' => 'ptr', 'Potri.003G123750' => 'ptr', 'Potri.005G055401' => 'ptr', 'Potri.005G219700' => 'ptr', 'Potri.005G220000' => 'ptr', 'Potri.008G161901' => 'ptr', 'Potri.008G162000' => 'ptr', 'Potri.008G162400' => 'ptr', 'Potri.010G076900' => 'ptr', 'Pp3c12_9180' => 'ppa', 'Pp3c13_19770' => 'ppa', 'Pp3c14_22950' => 'ppa', 'Pp3c16_12160' => 'ppa', 'Pp3c27_7820' => 'ppa', 'Pp3c2_3490' => 'ppa', 'Pp3c3_23700' => 'ppa', 'Pp3c3_36520' => 'ppa', 'Pp3c4_15250' => 'ppa', 'PRCOL_00007002' => 'pco', 'Prupe.1G030600' => 'ppe', 'Prupe.1G030700' => 'ppe', 'Prupe.6G345200' => 'ppe', 'Prupe.8G230300' => 'ppe', 'Prupe.8G230500' => 'ppe', 'Psat3g059600' => 'psa', 'Psat5g200920' => 'psa', 'Psat6g056440' => 'psa', 'Psat6g057360' => 'psa', 'Psat6g134120' => 'psa', 'Psat6g134160' => 'psa', 'Psat7g008640' => 'psa', 'Psat7g185240' => 'psa', 'PSO017G1330' => 'pso', 'PSO063G6097' => 'pso', 'PSO170G0835' => 'pso', 'PSO170G2499' => 'pso', 'PSO210G5058' => 'pso', 'PSO210G6154' => 'pso', 'PSO585G0031' => 'pso', 'PSO832G0264' => 'pso', 'PSO832G4288' => 'pso', 'QL03p027355' => 'qlo', 'QL03p027430' => 'qlo', 'QL04p081380' => 'qlo', 'QL06p015642' => 'qlo', 'QL06p015650' => 'qlo', 'QL06p015686' => 'qlo', 'QL12p042927' => 'qlo', 'QL93p1863_0035' => 'qlo', 'RcHm_v2.0_Chr3g0450581' => 'rch', 'RcHm_v2.0_Chr4g0390371' => 'rch', 'RcHm_v2.0_Chr4g0390381' => 'rch', 'RcHm_v2.0_Chr4g0390491' => 'rch', 'RcHm_v2.0_Chr4g0390501' => 'rch', 'RcHm_v2.0_Chr6g0289231' => 'rch', 'Rhsim04G0190400' => 'rsi', 'Rhsim04G0190500' => 'rsi', 'Rhsim04G0190600' => 'rsi', 'Rhsim13G0031400' => 'rsi', 'Rhsim13G0165600' => 'rsi', 'RhsimUnG0114600' => 'rsi', 'RhsimUnG0114700' => 'rsi', 'Sabra02G0034800' => 'sbr', 'Sabra02G0035100' => 'sbr', 'Sabra05G0168600' => 'sbr', 'Sabra05G0168800' => 'sbr', 'Sabra08G0123700' => 'sbr', 'Sabra10G0031900' => 'sbr', 'Sabra13G0039000' => 'sbr', 'SalBow2G0782' => 'sbo', 'SalBow2G1403' => 'sbo', 'SalBow4G0074' => 'sbo', 'SalBow4G2635' => 'sbo', 'SalBow5G3010' => 'sbo', 'Sc05g0000870' => 'sci', 'Sc05g0000890' => 'sci', 'Sc13g0005000' => 'sci', 'Sc13g0005030' => 'sci', 'Sc19g0003790' => 'sci', 'Sc19g0003800' => 'sci', 'Sed0003467' => 'sed', 'Sed0009355' => 'sed', 'Sed0009894' => 'sed', 'Sed0011972' => 'sed', 'Sed0021483' => 'sed', 'Sed0021750' => 'sed', 'Sed0026279' => 'sed', 'SEGI_05312' => 'sgi', 'SEGI_10112' => 'sgi', 'SEGI_15835' => 'sgi', 'SEGI_30386' => 'sgi', 'SEGI_34122' => 'sgi', 'SEGI_35063' => 'sgi', 'SGA_v2.0_scaffold101G29794' => 'sas', 'SGA_v2.0_scaffold1G00573' => 'sas', 'SGA_v2.0_scaffold79G25637' => 'sas', 'SGA_v2.0_scaffold88G27283' => 'sas', 'SGA_v2.0_scaffold88G27285' => 'sas', 'SGA_v2.0_scaffold88G27331' => 'sas', 'SHI09937' => 'shi', 'SMO119G0302' => 'smo', 'SMO137G0231' => 'smo', 'SMO367G1151' => 'smo', 'Solyc02g082000.3' => 'sly', 'Solyc06g031670.3' => 'sly', 'Solyc06g053810.3' => 'sly', 'Solyc07g025457.1' => 'sly', 'Solyc08g059740.1' => 'sly', 'Solyc08g059750.3' => 'sly', 'Solyc09g083370.3' => 'sly', 'Solyc12g038950.3' => 'sly', 'Sopen02g026630' => 'spe', 'Sopen06g018930' => 'spe', 'Sopen06g018940' => 'spe', 'Sopen08g009460' => 'spe', 'Sopen09g032290' => 'spe', 'Sp1g03080' => 'spa', 'Sp1g03090' => 'spa', 'Sp1g05480' => 'spa', 'Sp2g07860' => 'spa', 'Sp2g08430' => 'spa', 'Sp2g08440' => 'spa', 'Sp2g26200' => 'spa', 'Sp4g13170' => 'spa', 'Sp6g33840' => 'spa', 'SpUn1204_0010' => 'spa', 'TAR365G0908' => 'tar', 'TAR381G1270' => 'tar', 'TAR381G1651' => 'tar', 'TAR625G1131' => 'tar', 'TAR633G0962' => 'tar', 'TAR633G1729' => 'tar', 'TAR633G1864' => 'tar', 'TAR636G0221' => 'tar', 'TAR636G0314' => 'tar', 'TAR636G3202' => 'tar', 'THA.LOC104800805' => 'tha', 'THA.LOC104801096' => 'tha', 'THA.LOC104801555' => 'tha', 'THA.LOC104808491' => 'tha', 'THA.LOC104808595' => 'tha', 'THA.LOC104815985' => 'tha', 'THA.LOC104822250' => 'tha', 'THA.LOC104826071' => 'tha', 'Thecc.01G265200' => 'tca', 'Thecc.01G265300' => 'tca', 'Thecc.01G265700' => 'tca', 'Thecc.03G109100' => 'tca', 'Thecc.04G245900' => 'tca', 'Thecc.04G246000' => 'tca', 'Thhalv10003334m.g' => 'esa', 'Thhalv10005508m.g' => 'esa', 'Thhalv10005643m.g' => 'esa', 'Thhalv10007316m.g' => 'esa', 'Thhalv10009006m.g' => 'esa', 'Thhalv10009309m.g' => 'esa', 'Thhalv10014917m.g' => 'esa', 'Thhalv10014919m.g' => 'esa', 'Thhalv10015393m.g' => 'esa', 'Thhalv10016515m.g' => 'esa', 'Thhalv10029242m.g' => 'esa', 'TPR.G16654' => 'tpr', 'TPR.G20589' => 'tpr', 'TPR.G23029' => 'tpr', 'TPR.G27731' => 'tpr', 'TPR.G28889' => 'tpr', 'TPR.G28899' => 'tpr', 'TPR.G30846' => 'tpr', 'TPR.G5452' => 'tpr', 'TPR.G5713' => 'tpr', 'TPR.G9046' => 'tpr', 'TPR.G9061' => 'tpr', 'TWI09G1075' => 'twi', 'TWI12G0806' => 'twi', 'TWI18G0108' => 'twi', 'TWI53G1361' => 'twi', 'TWI73G0185' => 'twi', 'TWI73G0427' => 'twi', 'unitig_37.g12001' => 'ugi', 'unitig_747.g21660' => 'ugi', 'unitig_748.g7232' => 'ugi', 'unitig_748.g7315' => 'ugi', 'unitig_85.g27262' => 'ugi', 'unitig_92.g28220' => 'ugi', 'vmacro02632' => 'vma', 'vmacro08410' => 'vma', 'vmacro08411' => 'vma', 'vmacro15407' => 'vma', 'VMungo0251G3619' => 'vmu', 'VMungo0720G1204' => 'vmu', 'VMungo0720G1918' => 'vmu', 'VMungo0720G2387' => 'vmu', 'VMungo0720G2961' => 'vmu', 'VMungo1215G2154' => 'vmu', 'VMungo1383G2411' => 'vmu', 'Zm00001eb051130' => 'zma', 'Zm00001eb116830' => 'zma', 'Zm00001eb116850' => 'zma', 'Zm00001eb151740' => 'zma', 'Zm00001eb292360' => 'zma', 'Zm00001eb301640' => 'zma' ) $gf_id = 'HOM05D000856' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000856' ) $data_identifier = 'HOM05D000856' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 13, 'ath' => (int) 10, 'atr' => (int) 1, 'acertr' => (int) 8, 'cqu' => (int) 6, 'bca' => (int) 21, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 11, 'car' => (int) 9, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 8, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 5, 'fan' => (int) 16, 'fve' => (int) 6, 'gma' => (int) 11, 'ghi' => (int) 19, 'gra' => (int) 9, 'vvi' => (int) 7, 'han' => (int) 17, 'cav' => (int) 5, 'hma' => (int) 2, 'vpl' => (int) 2, 'sun' => (int) 7, 'lal' => (int) 9, 'lja' => (int) 5, 'lonja' => (int) 9, 'lsa' => (int) 5, 'mes' => (int) 8, 'mpo' => (int) 3, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 10, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 15, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 9, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 9, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 6, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 5, 'spa' => (int) 10, 'tar' => (int) 10, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 11, 'tpr' => (int) 11, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 4, 'vmu' => (int) 7, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb301640' $species_info = array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ) $local_species = 'ghi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000856', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p00010' => 'bna', 'A03p04160' => 'bna', 'A03p17160' => 'bna', 'A04p23370' => 'bna', 'A05p14860' => 'bna', 'A08p37020' => 'bna', 'A09p08050' => 'bna', 'A09p66800' => 'bna', 'A09p67940' => 'bna', 'A10p02680' => 'bna', 'A10p05320' => 'bna', 'Aa31LG1G20560' => 'aar', 'Aa31LG1G20610' => 'aar', 'Aa31LG1G7810' => 'aar', 'Aa31LG5G3590' => 'aar', 'Aa31LG5G6140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3819' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4683' => 'aag', 'Actinidia04480' => 'ach', 'Actinidia05466' => 'ach', 'Actinidia08445' => 'ach', 'Actinidia21170' => 'ach', 'Actinidia24812' => 'ach', 'Actinidia24951' => 'ach', 'Actinidia40088' => 'ach', 'Ah.02g111660' => 'amhyb', 'Ah.11g048900' => 'amhyb', 'Ah.11g049910' => 'amhyb', 'AL1G13870' => 'aly', 'AL1G13880' => 'aly', 'AL1G16760' => 'aly', 'AL390U10020' => 'aly', 'AL4G25520' => 'aly', 'AL6G19890' => 'aly', 'AL6G19900' => 'aly', 'AL6G19910' => 'aly', 'AL8G40100' => 'aly', 'Aqoxy2G03562' => 'aox', 'Aqoxy5G00316' => 'aox', 'Aqoxy5G00926' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1628KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1H403S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2FU6SJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.882I6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8YRY2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YN1SN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AF70II' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZA8L1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F916KL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHRD8H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KTZ8QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S22EMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8M29T' => 'arhy', 'AT1G04270' => 'ath', 'AT1G04280' => 'ath', 'AT1G06750' => 'ath', 'AT1G33850' => 'ath', 'AT2G30630' => 'ath', 'AT5G09490' => 'ath', 'AT5G09500' => 'ath', 'AT5G09510' => 'ath', 'AT5G43640' => 'ath', 'AT5G63070' => 'ath', 'ATR0605G315' => 'atr', 'Atru.chr11.175' => 'acertr', 'Atru.chr11.653' => 'acertr', 'Atru.chr3.1616' => 'acertr', 'Atru.chr4.2230' => 'acertr', 'Atru.chr4.2232' => 'acertr', 'Atru.chr5.1598' => 'acertr', 'Atru.chr5.1600' => 'acertr', 'Atru.chr5.2188' => 'acertr', 'AUR62008326' => 'cqu', 'AUR62011922' => 'cqu', 'AUR62011924' => 'cqu', 'AUR62021771' => 'cqu', 'AUR62032237' => 'cqu', 'AUR62032240' => 'cqu', 'BcaB01g05572' => 'bca', 'BcaB02g10337' => 'bca', 'BcaB04g19944' => 'bca', 'BcaB05g21548' => 'bca', 'BcaB05g21549' => 'bca', 'BcaB05g23227' => 'bca', 'BcaB06g26256' => 'bca', 'BcaB06g26257' => 'bca', 'BcaB06g28379' => 'bca', 'BcaC02g11159' => 'bca', 'BcaC03g13258' => 'bca', 'BcaC03g13259' => 'bca', 'BcaC05g24456' => 'bca', 'BcaC05g24457' => 'bca', 'BcaC07g36922' => 'bca', 'BcaC07g36923' => 'bca', 'BcaC07g42050' => 'bca', 'BcaC07g42176' => 'bca', 'BcaC07g42195' => 'bca', 'BcaC07g42196' => 'bca', 'BcaNung06674' => 'bca', 'BolC2t06351H' => 'bol', 'BolC2t06352H' => 'bol', 'BolC3t12993H' => 'bol', 'BolC4t23525H' => 'bol', 'BolC4t27475H' => 'bol', 'BolC5t29025H' => 'bol', 'BolC5t29026H' => 'bol', 'BolC8t46898H' => 'bol', 'BolC8t46899H' => 'bol', 'BolC8t52630H' => 'bol', 'BolC8t52765H' => 'bol', 'BolC9t53824H' => 'bol', 'BraA03t09760Z' => 'bra', 'BraA03t10990Z' => 'bra', 'BraA05t20413Z' => 'bra', 'BraA08t35602Z' => 'bra', 'BraA09t36458Z' => 'bra', 'BraA09t42018Z' => 'bra', 'BraA09t42129Z' => 'bra', 'BraA10t42536Z' => 'bra', 'BraA10t42537Z' => 'bra', 'C01p10690' => 'bna', 'C02p03890' => 'bna', 'C02p03900' => 'bna', 'C03p04620' => 'bna', 'C04p19870' => 'bna', 'C04p59670' => 'bna', 'C05p02460' => 'bna', 'C05p02470' => 'bna', 'C08p00980' => 'bna', 'C08p00990' => 'bna', 'C08p51030' => 'bna', 'C08p52360' => 'bna', 'C09p09120' => 'bna', 'CAN.G19.15' => 'can', 'CAN.G251.10' => 'can', 'CAN.G251.9' => 'can', 'CAN.G398.24' => 'can', 'CAN.G410.32' => 'can', 'CAN.G881.2' => 'can', 'CANSAT01G3025' => 'cansat', 'CANSAT78G1211' => 'cansat', 'CANSAT78G1218' => 'cansat', 'CANSAT78G1521' => 'cansat', 'CANSAT78G1670' => 'cansat', 'CARHR003600' => 'chi', 'CARHR003610' => 'chi', 'CARHR006290' => 'chi', 'CARHR006430' => 'chi', 'CARHR124110' => 'chi', 'CARHR203870' => 'chi', 'CARHR203880' => 'chi', 'CARHR203890' => 'chi', 'CARHR276880' => 'chi', 'Carub.0001s0346' => 'cru', 'Carub.0001s0347' => 'cru', 'Carub.0001s0607' => 'cru', 'Carub.0003s2768' => 'cru', 'Carub.0003s2769' => 'cru', 'Carub.0004s1178' => 'cru', 'Carub.0006s0806' => 'cru', 'Carub.0006s0807' => 'cru', 'Carub.0006s0808' => 'cru', 'Carub.0008s0501' => 'cru', 'Carub.0008s2379' => 'cru', 'Ca_08655_v3' => 'car', 'Ca_08922_v3' => 'car', 'Ca_08923_v3' => 'car', 'Ca_09119_v3' => 'car', 'Ca_09703_v3' => 'car', 'Ca_09705_v3' => 'car', 'Ca_09835_v3' => 'car', 'Ca_26403_v3' => 'car', 'Ca_30719_v3' => 'car', 'CBR_g17958' => 'cbr', 'CBR_g40516' => 'cbr', 'Cc00_g05350' => 'ccan', 'Cc01_g18690' => 'ccan', 'Cc03_g04830' => 'ccan', 'Cc03_g04850' => 'ccan', 'CDE02G4469' => 'cde', 'CDE06G0883' => 'cde', 'CDE06G1295' => 'cde', 'CDE06G1390' => 'cde', 'CDE07G0584' => 'cde', 'CDE07G1084' => 'cde', 'CDE08G1259' => 'cde', 'Cfa002341' => 'cfa', 'Cfa024337' => 'cfa', 'Ciclev10004749m.g' => 'ccl', 'Ciclev10006127m.g' => 'ccl', 'Ciclev10019720m.g' => 'ccl', 'Ciclev10022652m.g' => 'ccl', 'CiPaw.01G190400' => 'cil', 'CiPaw.01G190500' => 'cil', 'CiPaw.02G116400' => 'cil', 'CiPaw.02G116500' => 'cil', 'CiPaw.04G183000' => 'cil', 'CiPaw.04G183300' => 'cil', 'ClCG05G004610' => 'cla', 'ClCG05G004620' => 'cla', 'ClCG06G006730' => 'cla', 'ClCG06G006740' => 'cla', 'ClCG11G003690' => 'cla', 'COL.COLO4_08276' => 'col', 'COL.COLO4_08277' => 'col', 'COL.COLO4_15787' => 'col', 'COL.COLO4_15789' => 'col', 'Cpa.g.c44815' => 'cpa', 'Cpa.g.sc52.144' => 'cpa', 'Cpa.g.sc58.46' => 'cpa', 'Cpa.g.sc58.47' => 'cpa', 'Cre08.g360900' => 'cre', 'CsaV3_2G013030' => 'csa', 'CsaV3_2G013050' => 'csa', 'CsaV3_2G015620' => 'csa', 'CsaV3_3G012590' => 'csa', 'CsaV3_3G012600' => 'csa', 'CSS0001641' => 'camsi', 'CSS0008310' => 'camsi', 'CSS0013011' => 'camsi', 'CSS0017147' => 'camsi', 'CSS0022970' => 'camsi', 'CSS0025655' => 'camsi', 'CSS0028665' => 'camsi', 'CSS0029117' => 'camsi', 'CSS0032024' => 'camsi', 'CSS0039681' => 'camsi', 'CSS0046516' => 'camsi', 'CSS0050307' => 'camsi', 'DCAR_005871' => 'dca', 'DCAR_007342' => 'dca', 'DCAR_024228' => 'dca', 'DCAR_027277' => 'dca', 'DCAR_030718' => 'dca', 'Dinv20287' => 'din', 'Dinv22461' => 'din', 'Dinv22464' => 'din', 'Dinv29912' => 'din', 'Dinv29913' => 'din', 'Dinv34580' => 'din', 'Dinv34582' => 'din', 'Dinv44632' => 'din', 'Duzib052G0266' => 'dzi', 'Duzib133G0907' => 'dzi', 'Duzib133G1034' => 'dzi', 'Duzib138G0207' => 'dzi', 'Duzib138G0491' => 'dzi', 'Duzib151G0812' => 'dzi', 'Duzib151G1166' => 'dzi', 'Duzib168G0192' => 'dzi', 'Duzib211G0077' => 'dzi', 'Duzib212G0429' => 'dzi', 'Duzib212G0472' => 'dzi', 'ECA233G2617' => 'eca', 'ECA236G4188' => 'eca', 'ECA240G0936' => 'eca', 'ECA240G1129' => 'eca', 'ECA247G0623' => 'eca', 'EL10Ac5g10451' => 'bvu', 'EL10Ac5g10453' => 'bvu', 'EL10Ac5g10894' => 'bvu', 'Eucgr.H00192' => 'egr', 'Eucgr.H00193' => 'egr', 'Eucgr.H00194' => 'egr', 'Eucgr.J01562' => 'egr', 'Eucgr.K03301' => 'egr', 'FAN02G0632' => 'fan', 'FAN05G5378' => 'fan', 'FAN09G3247' => 'fan', 'FAN12G0435' => 'fan', 'FAN12G2426' => 'fan', 'FAN14G1707' => 'fan', 'FAN14G4725' => 'fan', 'FAN15G2071' => 'fan', 'FAN17G3065' => 'fan', 'FAN19G1376' => 'fan', 'FAN20G0354' => 'fan', 'FAN20G2429' => 'fan', 'FAN20G2658' => 'fan', 'FAN24G2343' => 'fan', 'FAN27G2362' => 'fan', 'FAN28G1765' => 'fan', 'FvH4_1g16020' => 'fve', 'FvH4_2g04890' => 'fve', 'FvH4_2g22270' => 'fve', 'FvH4_4g02630' => 'fve', 'FvH4_4g02640' => 'fve', 'FvH4_6g02650' => 'fve', 'Glyma.02G140600' => 'gma', 'Glyma.03G159900' => 'gma', 'Glyma.05G234800' => 'gma', 'Glyma.07G269600' => 'gma', 'Glyma.08G042300' => 'gma', 'Glyma.10G033500' => 'gma', 'Glyma.10G185200' => 'gma', 'Glyma.17G004300' => 'gma', 'Glyma.19G161900' => 'gma', 'Glyma.20G205100' => 'gma', 'Glyma.20G205200' => 'gma', 'Gohir.A01G139101' => 'ghi', 'Gohir.A02G035600' => 'ghi', 'Gohir.A02G117901' => 'ghi', 'Gohir.A07G210100' => 'ghi', 'Gohir.A07G210200' => 'ghi', 'Gohir.A08G061100' => 'ghi', 'Gohir.A09G223000' => 'ghi', 'Gohir.A09G223100' => 'ghi', 'Gohir.A10G113900' => 'ghi', 'Gohir.A10G114000' => 'ghi', 'Gohir.D02G042300' => 'ghi', 'Gohir.D07G216100' => 'ghi', 'Gohir.D07G216200' => 'ghi', 'Gohir.D08G070400' => 'ghi', 'Gohir.D09G225000' => 'ghi', 'Gohir.D09G225100' => 'ghi', 'Gohir.D10G152300' => 'ghi', 'Gohir.D10G153200' => 'ghi', 'Gohir.D11G133701' => 'ghi', 'Gorai.004G074100' => 'gra', 'Gorai.005G046800' => 'gra', 'Gorai.006G246500' => 'gra', 'Gorai.006G246600' => 'gra', 'Gorai.007G142900' => 'gra', 'Gorai.011G171000' => 'gra', 'Gorai.011G171100' => 'gra', 'Gorai.013G104300' => 'gra', 'Gorai.013G104400' => 'gra', 'GSVIVG01000754001' => 'vvi', 'GSVIVG01000756001' => 'vvi', 'GSVIVG01010903001' => 'vvi', 'GSVIVG01017623001' => 'vvi', 'GSVIVG01018113001' => 'vvi', 'GSVIVG01018116001' => 'vvi', 'GSVIVG01018118001' => 'vvi', 'HanXRQChr03g0076211' => 'han', 'HanXRQChr03g0092431' => 'han', 'HanXRQChr03g0092441' => 'han', 'HanXRQChr03g0092591' => 'han', 'HanXRQChr03g0092671' => 'han', 'HanXRQChr03g0092681' => 'han', 'HanXRQChr03g0092691' => 'han', 'HanXRQChr03g0092701' => 'han', 'HanXRQChr03g0092721' => 'han', 'HanXRQChr03g0092731' => 'han', 'HanXRQChr04g0113681' => 'han', 'HanXRQChr10g0281371' => 'han', 'HanXRQChr11g0337141' => 'han', 'HanXRQChr13g0424521' => 'han', 'HanXRQChr13g0424531' => 'han', 'HanXRQChr13g0424541' => 'han', 'HanXRQChr16g0498221' => 'han', 'Haze_04377' => 'cav', 'Haze_11298' => 'cav', 'Haze_24547' => 'cav', 'Haze_24550' => 'cav', 'Haze_26587' => 'cav', 'Hma1.2p1_0650F.1_g195410' => 'hma', 'Hma1.2p1_0893F.1_g233470' => 'hma', 'HPP92_006508' => 'vpl', 'HPP92_024780' => 'vpl', 'Hund02688' => 'sun', 'Hund09380' => 'sun', 'Hund09381' => 'sun', 'Hund09832' => 'sun', 'Hund09833' => 'sun', 'Hund11351' => 'sun', 'Hund11513' => 'sun', 'Lalb_Chr06g0162591' => 'lal', 'Lalb_Chr06g0162601' => 'lal', 'Lalb_Chr06g0169321' => 'lal', 'Lalb_Chr09g0330951' => 'lal', 'Lalb_Chr16g0387631' => 'lal', 'Lalb_Chr21g0306241' => 'lal', 'Lalb_Chr25g0290051' => 'lal', 'Lalb_Chr25g0290061' => 'lal', 'Lalb_Chr25g0290071' => 'lal', 'Lj1g0003876' => 'lja', 'Lj1P1207T36' => 'lonja', 'Lj2C1156G12' => 'lonja', 'Lj3A793G39' => 'lonja', 'Lj3C580G2' => 'lonja', 'Lj3C780G2' => 'lonja', 'Lj3C780T4' => 'lonja', 'Lj3C793G9' => 'lonja', 'Lj4g0012960' => 'lja', 'Lj5g0021252' => 'lja', 'Lj5g0021484' => 'lja', 'Lj5g0024528' => 'lja', 'Lj6A399T12' => 'lonja', 'Lj6A656G65' => 'lonja', 'Lsat_1_v5_gn_3_125500' => 'lsa', 'Lsat_1_v5_gn_3_125540' => 'lsa', 'Lsat_1_v5_gn_5_72701' => 'lsa', 'Lsat_1_v5_gn_8_91560' => 'lsa', 'Lsat_1_v5_gn_9_9640' => 'lsa', 'Manes.01G200600' => 'mes', 'Manes.01G200700' => 'mes', 'Manes.03G168900' => 'mes', 'Manes.03G169000' => 'mes', 'Manes.05G085801' => 'mes', 'Manes.05G086200' => 'mes', 'Manes.15G036700' => 'mes', 'Manes.15G036900' => 'mes', 'Mapoly0004s0172' => 'mpo', 'Mapoly0023s0001' => 'mpo', 'Mapoly0142s0012' => 'mpo', 'MBI01_g32854_MAGBIO' => 'mbi', 'MBI11_g24427_MAGBIO' => 'mbi', 'MBI11_g47319_MAGBIO' => 'mbi', 'MCO01G433' => 'mco', 'MD00G1187800' => 'mdo', 'MD04G1226500' => 'mdo', 'MD05G1203900' => 'mdo', 'MD10G1191100' => 'mdo', 'MD12G1243500' => 'mdo', 'MD13G1207000' => 'mdo', 'MD13G1207100' => 'mdo', 'MD16G1208600' => 'mdo', 'Medtr1g050352' => 'mtr', 'Medtr1g070385' => 'mtr', 'Medtr1g070450' => 'mtr', 'Medtr1g075200' => 'mtr', 'Medtr1g075250' => 'mtr', 'Medtr1g075260' => 'mtr', 'Medtr1g475250' => 'mtr', 'Medtr4g075450' => 'mtr', 'Medtr7g096300' => 'mtr', 'Medtr8g105110' => 'mtr', 'MELO3C006470.2' => 'cme', 'MELO3C006471.2' => 'cme', 'MELO3C020772.2' => 'cme', 'MELO3C026780.2' => 'cme', 'MELO3C026781.2' => 'cme', 'Migut.D00390' => 'egut', 'Migut.G00435' => 'egut', 'Migut.G00436' => 'egut', 'Migut.G00718' => 'egut', 'MSTRG.21891' => 'ama', 'MSTRG.26910' => 'ama', 'MSTRG.4099' => 'ama', 'MSTRG.9925' => 'ama', 'Nitab4.5_0000165g0010' => 'nta', 'Nitab4.5_0000209g0180' => 'nta', 'Nitab4.5_0000244g0440' => 'nta', 'Nitab4.5_0000525g0220' => 'nta', 'Nitab4.5_0001597g0020' => 'nta', 'Nitab4.5_0001878g0040' => 'nta', 'Nitab4.5_0001878g0060' => 'nta', 'Nitab4.5_0002838g0100' => 'nta', 'Nitab4.5_0002838g0120' => 'nta', 'Nitab4.5_0004798g0030' => 'nta', 'Nitab4.5_0005420g0010' => 'nta', 'Nitab4.5_0005507g0010' => 'nta', 'Nitab4.5_0005574g0020' => 'nta', 'Nitab4.5_0005838g0010' => 'nta', 'Nitab4.5_0010580g0020' => 'nta', 'Nn1g02599' => 'nnu', 'Nn1g02608' => 'nnu', 'Nn3g17742' => 'nnu', 'Nn3g19534' => 'nnu', 'Nn3g19535' => 'nnu', 'Oeu008790.1' => 'oeu', 'Oeu008792.1' => 'oeu', 'Oeu032590.1' => 'oeu', 'Oeu035349.1' => 'oeu', 'Oeu049791.1' => 'oeu', 'Os01g0774500' => 'osa', 'Os03g0628800' => 'osa', 'Os03g0798600' => 'osa', 'Os05g0508800' => 'osa', 'Peaxi162Scf00036g02018' => 'pax', 'Peaxi162Scf00578g00032' => 'pax', 'Peaxi162Scf00578g00317' => 'pax', 'Peaxi162Scf00785g00114' => 'pax', 'Peaxi162Scf00813g00119' => 'pax', 'Peaxi162Scf00906g00227' => 'pax', 'PGR004G0875' => 'pgr', 'PGR004G2424' => 'pgr', 'PGR031G1239' => 'pgr', 'PGR031G2474' => 'pgr', 'PGR044G0423' => 'pgr', 'PGSC0003DMG400001128' => 'stu', 'PGSC0003DMG400007336' => 'stu', 'PGSC0003DMG400016318' => 'stu', 'PGSC0003DMG400016319' => 'stu', 'PGSC0003DMG400018074' => 'stu', 'Phvul.001G157700' => 'pvu', 'Phvul.002G148550' => 'pvu', 'Phvul.002G320200' => 'pvu', 'Phvul.003G089200' => 'pvu', 'Phvul.007G126000' => 'pvu', 'Phvul.007G126100' => 'pvu', 'Phvul.007G178000' => 'pvu', 'Phvul.007G178200' => 'pvu', 'Potri.002G043000' => 'ptr', 'Potri.002G043200' => 'ptr', 'Potri.003G123750' => 'ptr', 'Potri.005G055401' => 'ptr', 'Potri.005G219700' => 'ptr', 'Potri.005G220000' => 'ptr', 'Potri.008G161901' => 'ptr', 'Potri.008G162000' => 'ptr', 'Potri.008G162400' => 'ptr', 'Potri.010G076900' => 'ptr', 'Pp3c12_9180' => 'ppa', 'Pp3c13_19770' => 'ppa', 'Pp3c14_22950' => 'ppa', 'Pp3c16_12160' => 'ppa', 'Pp3c27_7820' => 'ppa', 'Pp3c2_3490' => 'ppa', 'Pp3c3_23700' => 'ppa', 'Pp3c3_36520' => 'ppa', 'Pp3c4_15250' => 'ppa', 'PRCOL_00007002' => 'pco', 'Prupe.1G030600' => 'ppe', 'Prupe.1G030700' => 'ppe', 'Prupe.6G345200' => 'ppe', 'Prupe.8G230300' => 'ppe', 'Prupe.8G230500' => 'ppe', 'Psat3g059600' => 'psa', 'Psat5g200920' => 'psa', 'Psat6g056440' => 'psa', 'Psat6g057360' => 'psa', 'Psat6g134120' => 'psa', 'Psat6g134160' => 'psa', 'Psat7g008640' => 'psa', 'Psat7g185240' => 'psa', 'PSO017G1330' => 'pso', 'PSO063G6097' => 'pso', 'PSO170G0835' => 'pso', 'PSO170G2499' => 'pso', 'PSO210G5058' => 'pso', 'PSO210G6154' => 'pso', 'PSO585G0031' => 'pso', 'PSO832G0264' => 'pso', 'PSO832G4288' => 'pso', 'QL03p027355' => 'qlo', 'QL03p027430' => 'qlo', 'QL04p081380' => 'qlo', 'QL06p015642' => 'qlo', 'QL06p015650' => 'qlo', 'QL06p015686' => 'qlo', 'QL12p042927' => 'qlo', 'QL93p1863_0035' => 'qlo', 'RcHm_v2.0_Chr3g0450581' => 'rch', 'RcHm_v2.0_Chr4g0390371' => 'rch', 'RcHm_v2.0_Chr4g0390381' => 'rch', 'RcHm_v2.0_Chr4g0390491' => 'rch', 'RcHm_v2.0_Chr4g0390501' => 'rch', 'RcHm_v2.0_Chr6g0289231' => 'rch', 'Rhsim04G0190400' => 'rsi', 'Rhsim04G0190500' => 'rsi', 'Rhsim04G0190600' => 'rsi', 'Rhsim13G0031400' => 'rsi', 'Rhsim13G0165600' => 'rsi', 'RhsimUnG0114600' => 'rsi', 'RhsimUnG0114700' => 'rsi', 'Sabra02G0034800' => 'sbr', 'Sabra02G0035100' => 'sbr', 'Sabra05G0168600' => 'sbr', 'Sabra05G0168800' => 'sbr', 'Sabra08G0123700' => 'sbr', 'Sabra10G0031900' => 'sbr', 'Sabra13G0039000' => 'sbr', 'SalBow2G0782' => 'sbo', 'SalBow2G1403' => 'sbo', 'SalBow4G0074' => 'sbo', 'SalBow4G2635' => 'sbo', 'SalBow5G3010' => 'sbo', 'Sc05g0000870' => 'sci', 'Sc05g0000890' => 'sci', 'Sc13g0005000' => 'sci', 'Sc13g0005030' => 'sci', 'Sc19g0003790' => 'sci', 'Sc19g0003800' => 'sci', 'Sed0003467' => 'sed', 'Sed0009355' => 'sed', 'Sed0009894' => 'sed', 'Sed0011972' => 'sed', 'Sed0021483' => 'sed', 'Sed0021750' => 'sed', 'Sed0026279' => 'sed', 'SEGI_05312' => 'sgi', 'SEGI_10112' => 'sgi', 'SEGI_15835' => 'sgi', 'SEGI_30386' => 'sgi', 'SEGI_34122' => 'sgi', 'SEGI_35063' => 'sgi', 'SGA_v2.0_scaffold101G29794' => 'sas', 'SGA_v2.0_scaffold1G00573' => 'sas', 'SGA_v2.0_scaffold79G25637' => 'sas', 'SGA_v2.0_scaffold88G27283' => 'sas', 'SGA_v2.0_scaffold88G27285' => 'sas', 'SGA_v2.0_scaffold88G27331' => 'sas', 'SHI09937' => 'shi', 'SMO119G0302' => 'smo', 'SMO137G0231' => 'smo', 'SMO367G1151' => 'smo', 'Solyc02g082000.3' => 'sly', 'Solyc06g031670.3' => 'sly', 'Solyc06g053810.3' => 'sly', 'Solyc07g025457.1' => 'sly', 'Solyc08g059740.1' => 'sly', 'Solyc08g059750.3' => 'sly', 'Solyc09g083370.3' => 'sly', 'Solyc12g038950.3' => 'sly', 'Sopen02g026630' => 'spe', 'Sopen06g018930' => 'spe', 'Sopen06g018940' => 'spe', 'Sopen08g009460' => 'spe', 'Sopen09g032290' => 'spe', 'Sp1g03080' => 'spa', 'Sp1g03090' => 'spa', 'Sp1g05480' => 'spa', 'Sp2g07860' => 'spa', 'Sp2g08430' => 'spa', 'Sp2g08440' => 'spa', 'Sp2g26200' => 'spa', 'Sp4g13170' => 'spa', 'Sp6g33840' => 'spa', 'SpUn1204_0010' => 'spa', 'TAR365G0908' => 'tar', 'TAR381G1270' => 'tar', 'TAR381G1651' => 'tar', 'TAR625G1131' => 'tar', 'TAR633G0962' => 'tar', 'TAR633G1729' => 'tar', 'TAR633G1864' => 'tar', 'TAR636G0221' => 'tar', 'TAR636G0314' => 'tar', 'TAR636G3202' => 'tar', 'THA.LOC104800805' => 'tha', 'THA.LOC104801096' => 'tha', 'THA.LOC104801555' => 'tha', 'THA.LOC104808491' => 'tha', 'THA.LOC104808595' => 'tha', 'THA.LOC104815985' => 'tha', 'THA.LOC104822250' => 'tha', 'THA.LOC104826071' => 'tha', 'Thecc.01G265200' => 'tca', 'Thecc.01G265300' => 'tca', 'Thecc.01G265700' => 'tca', 'Thecc.03G109100' => 'tca', 'Thecc.04G245900' => 'tca', 'Thecc.04G246000' => 'tca', 'Thhalv10003334m.g' => 'esa', 'Thhalv10005508m.g' => 'esa', 'Thhalv10005643m.g' => 'esa', 'Thhalv10007316m.g' => 'esa', 'Thhalv10009006m.g' => 'esa', 'Thhalv10009309m.g' => 'esa', 'Thhalv10014917m.g' => 'esa', 'Thhalv10014919m.g' => 'esa', 'Thhalv10015393m.g' => 'esa', 'Thhalv10016515m.g' => 'esa', 'Thhalv10029242m.g' => 'esa', 'TPR.G16654' => 'tpr', 'TPR.G20589' => 'tpr', 'TPR.G23029' => 'tpr', 'TPR.G27731' => 'tpr', 'TPR.G28889' => 'tpr', 'TPR.G28899' => 'tpr', 'TPR.G30846' => 'tpr', 'TPR.G5452' => 'tpr', 'TPR.G5713' => 'tpr', 'TPR.G9046' => 'tpr', 'TPR.G9061' => 'tpr', 'TWI09G1075' => 'twi', 'TWI12G0806' => 'twi', 'TWI18G0108' => 'twi', 'TWI53G1361' => 'twi', 'TWI73G0185' => 'twi', 'TWI73G0427' => 'twi', 'unitig_37.g12001' => 'ugi', 'unitig_747.g21660' => 'ugi', 'unitig_748.g7232' => 'ugi', 'unitig_748.g7315' => 'ugi', 'unitig_85.g27262' => 'ugi', 'unitig_92.g28220' => 'ugi', 'vmacro02632' => 'vma', 'vmacro08410' => 'vma', 'vmacro08411' => 'vma', 'vmacro15407' => 'vma', 'VMungo0251G3619' => 'vmu', 'VMungo0720G1204' => 'vmu', 'VMungo0720G1918' => 'vmu', 'VMungo0720G2387' => 'vmu', 'VMungo0720G2961' => 'vmu', 'VMungo1215G2154' => 'vmu', 'VMungo1383G2411' => 'vmu', 'Zm00001eb051130' => 'zma', 'Zm00001eb116830' => 'zma', 'Zm00001eb116850' => 'zma', 'Zm00001eb151740' => 'zma', 'Zm00001eb292360' => 'zma', 'Zm00001eb301640' => 'zma' ), 'gf_id' => 'HOM05D000856', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000856' ), 'data_identifier' => 'HOM05D000856', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000856', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p00010' => 'bna', 'A03p04160' => 'bna', 'A03p17160' => 'bna', 'A04p23370' => 'bna', 'A05p14860' => 'bna', 'A08p37020' => 'bna', 'A09p08050' => 'bna', 'A09p66800' => 'bna', 'A09p67940' => 'bna', 'A10p02680' => 'bna', 'A10p05320' => 'bna', 'Aa31LG1G20560' => 'aar', 'Aa31LG1G20610' => 'aar', 'Aa31LG1G7810' => 'aar', 'Aa31LG5G3590' => 'aar', 'Aa31LG5G6140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3819' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4683' => 'aag', 'Actinidia04480' => 'ach', 'Actinidia05466' => 'ach', 'Actinidia08445' => 'ach', 'Actinidia21170' => 'ach', 'Actinidia24812' => 'ach', 'Actinidia24951' => 'ach', 'Actinidia40088' => 'ach', 'Ah.02g111660' => 'amhyb', 'Ah.11g048900' => 'amhyb', 'Ah.11g049910' => 'amhyb', 'AL1G13870' => 'aly', 'AL1G13880' => 'aly', 'AL1G16760' => 'aly', 'AL390U10020' => 'aly', 'AL4G25520' => 'aly', 'AL6G19890' => 'aly', 'AL6G19900' => 'aly', 'AL6G19910' => 'aly', 'AL8G40100' => 'aly', 'Aqoxy2G03562' => 'aox', 'Aqoxy5G00316' => 'aox', 'Aqoxy5G00926' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1628KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1H403S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2FU6SJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.882I6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8YRY2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YN1SN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AF70II' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZA8L1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F916KL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHRD8H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KTZ8QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S22EMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8M29T' => 'arhy', 'AT1G04270' => 'ath', 'AT1G04280' => 'ath', 'AT1G06750' => 'ath', 'AT1G33850' => 'ath', 'AT2G30630' => 'ath', 'AT5G09490' => 'ath', 'AT5G09500' => 'ath', 'AT5G09510' => 'ath', 'AT5G43640' => 'ath', 'AT5G63070' => 'ath', 'ATR0605G315' => 'atr', 'Atru.chr11.175' => 'acertr', 'Atru.chr11.653' => 'acertr', 'Atru.chr3.1616' => 'acertr', 'Atru.chr4.2230' => 'acertr', 'Atru.chr4.2232' => 'acertr', 'Atru.chr5.1598' => 'acertr', 'Atru.chr5.1600' => 'acertr', 'Atru.chr5.2188' => 'acertr', 'AUR62008326' => 'cqu', 'AUR62011922' => 'cqu', 'AUR62011924' => 'cqu', 'AUR62021771' => 'cqu', 'AUR62032237' => 'cqu', 'AUR62032240' => 'cqu', 'BcaB01g05572' => 'bca', 'BcaB02g10337' => 'bca', 'BcaB04g19944' => 'bca', 'BcaB05g21548' => 'bca', 'BcaB05g21549' => 'bca', 'BcaB05g23227' => 'bca', 'BcaB06g26256' => 'bca', 'BcaB06g26257' => 'bca', 'BcaB06g28379' => 'bca', 'BcaC02g11159' => 'bca', 'BcaC03g13258' => 'bca', 'BcaC03g13259' => 'bca', 'BcaC05g24456' => 'bca', 'BcaC05g24457' => 'bca', 'BcaC07g36922' => 'bca', 'BcaC07g36923' => 'bca', 'BcaC07g42050' => 'bca', 'BcaC07g42176' => 'bca', 'BcaC07g42195' => 'bca', 'BcaC07g42196' => 'bca', 'BcaNung06674' => 'bca', 'BolC2t06351H' => 'bol', 'BolC2t06352H' => 'bol', 'BolC3t12993H' => 'bol', 'BolC4t23525H' => 'bol', 'BolC4t27475H' => 'bol', 'BolC5t29025H' => 'bol', 'BolC5t29026H' => 'bol', 'BolC8t46898H' => 'bol', 'BolC8t46899H' => 'bol', 'BolC8t52630H' => 'bol', 'BolC8t52765H' => 'bol', 'BolC9t53824H' => 'bol', 'BraA03t09760Z' => 'bra', 'BraA03t10990Z' => 'bra', 'BraA05t20413Z' => 'bra', 'BraA08t35602Z' => 'bra', 'BraA09t36458Z' => 'bra', 'BraA09t42018Z' => 'bra', 'BraA09t42129Z' => 'bra', 'BraA10t42536Z' => 'bra', 'BraA10t42537Z' => 'bra', 'C01p10690' => 'bna', 'C02p03890' => 'bna', 'C02p03900' => 'bna', 'C03p04620' => 'bna', 'C04p19870' => 'bna', 'C04p59670' => 'bna', 'C05p02460' => 'bna', 'C05p02470' => 'bna', 'C08p00980' => 'bna', 'C08p00990' => 'bna', 'C08p51030' => 'bna', 'C08p52360' => 'bna', 'C09p09120' => 'bna', 'CAN.G19.15' => 'can', 'CAN.G251.10' => 'can', 'CAN.G251.9' => 'can', 'CAN.G398.24' => 'can', 'CAN.G410.32' => 'can', 'CAN.G881.2' => 'can', 'CANSAT01G3025' => 'cansat', 'CANSAT78G1211' => 'cansat', 'CANSAT78G1218' => 'cansat', 'CANSAT78G1521' => 'cansat', 'CANSAT78G1670' => 'cansat', 'CARHR003600' => 'chi', 'CARHR003610' => 'chi', 'CARHR006290' => 'chi', 'CARHR006430' => 'chi', 'CARHR124110' => 'chi', 'CARHR203870' => 'chi', 'CARHR203880' => 'chi', 'CARHR203890' => 'chi', 'CARHR276880' => 'chi', 'Carub.0001s0346' => 'cru', 'Carub.0001s0347' => 'cru', 'Carub.0001s0607' => 'cru', 'Carub.0003s2768' => 'cru', 'Carub.0003s2769' => 'cru', 'Carub.0004s1178' => 'cru', 'Carub.0006s0806' => 'cru', 'Carub.0006s0807' => 'cru', 'Carub.0006s0808' => 'cru', 'Carub.0008s0501' => 'cru', 'Carub.0008s2379' => 'cru', 'Ca_08655_v3' => 'car', 'Ca_08922_v3' => 'car', 'Ca_08923_v3' => 'car', 'Ca_09119_v3' => 'car', 'Ca_09703_v3' => 'car', 'Ca_09705_v3' => 'car', 'Ca_09835_v3' => 'car', 'Ca_26403_v3' => 'car', 'Ca_30719_v3' => 'car', 'CBR_g17958' => 'cbr', 'CBR_g40516' => 'cbr', 'Cc00_g05350' => 'ccan', 'Cc01_g18690' => 'ccan', 'Cc03_g04830' => 'ccan', 'Cc03_g04850' => 'ccan', 'CDE02G4469' => 'cde', 'CDE06G0883' => 'cde', 'CDE06G1295' => 'cde', 'CDE06G1390' => 'cde', 'CDE07G0584' => 'cde', 'CDE07G1084' => 'cde', 'CDE08G1259' => 'cde', 'Cfa002341' => 'cfa', 'Cfa024337' => 'cfa', 'Ciclev10004749m.g' => 'ccl', 'Ciclev10006127m.g' => 'ccl', 'Ciclev10019720m.g' => 'ccl', 'Ciclev10022652m.g' => 'ccl', 'CiPaw.01G190400' => 'cil', 'CiPaw.01G190500' => 'cil', 'CiPaw.02G116400' => 'cil', 'CiPaw.02G116500' => 'cil', 'CiPaw.04G183000' => 'cil', 'CiPaw.04G183300' => 'cil', 'ClCG05G004610' => 'cla', 'ClCG05G004620' => 'cla', 'ClCG06G006730' => 'cla', 'ClCG06G006740' => 'cla', 'ClCG11G003690' => 'cla', 'COL.COLO4_08276' => 'col', 'COL.COLO4_08277' => 'col', 'COL.COLO4_15787' => 'col', 'COL.COLO4_15789' => 'col', 'Cpa.g.c44815' => 'cpa', 'Cpa.g.sc52.144' => 'cpa', 'Cpa.g.sc58.46' => 'cpa', 'Cpa.g.sc58.47' => 'cpa', 'Cre08.g360900' => 'cre', 'CsaV3_2G013030' => 'csa', 'CsaV3_2G013050' => 'csa', 'CsaV3_2G015620' => 'csa', 'CsaV3_3G012590' => 'csa', 'CsaV3_3G012600' => 'csa', 'CSS0001641' => 'camsi', 'CSS0008310' => 'camsi', 'CSS0013011' => 'camsi', 'CSS0017147' => 'camsi', 'CSS0022970' => 'camsi', 'CSS0025655' => 'camsi', 'CSS0028665' => 'camsi', 'CSS0029117' => 'camsi', 'CSS0032024' => 'camsi', 'CSS0039681' => 'camsi', 'CSS0046516' => 'camsi', 'CSS0050307' => 'camsi', 'DCAR_005871' => 'dca', 'DCAR_007342' => 'dca', 'DCAR_024228' => 'dca', 'DCAR_027277' => 'dca', 'DCAR_030718' => 'dca', 'Dinv20287' => 'din', 'Dinv22461' => 'din', 'Dinv22464' => 'din', 'Dinv29912' => 'din', 'Dinv29913' => 'din', 'Dinv34580' => 'din', 'Dinv34582' => 'din', 'Dinv44632' => 'din', 'Duzib052G0266' => 'dzi', 'Duzib133G0907' => 'dzi', 'Duzib133G1034' => 'dzi', 'Duzib138G0207' => 'dzi', 'Duzib138G0491' => 'dzi', 'Duzib151G0812' => 'dzi', 'Duzib151G1166' => 'dzi', 'Duzib168G0192' => 'dzi', 'Duzib211G0077' => 'dzi', 'Duzib212G0429' => 'dzi', 'Duzib212G0472' => 'dzi', 'ECA233G2617' => 'eca', 'ECA236G4188' => 'eca', 'ECA240G0936' => 'eca', 'ECA240G1129' => 'eca', 'ECA247G0623' => 'eca', 'EL10Ac5g10451' => 'bvu', 'EL10Ac5g10453' => 'bvu', 'EL10Ac5g10894' => 'bvu', 'Eucgr.H00192' => 'egr', 'Eucgr.H00193' => 'egr', 'Eucgr.H00194' => 'egr', 'Eucgr.J01562' => 'egr', 'Eucgr.K03301' => 'egr', 'FAN02G0632' => 'fan', 'FAN05G5378' => 'fan', 'FAN09G3247' => 'fan', 'FAN12G0435' => 'fan', 'FAN12G2426' => 'fan', 'FAN14G1707' => 'fan', 'FAN14G4725' => 'fan', 'FAN15G2071' => 'fan', 'FAN17G3065' => 'fan', 'FAN19G1376' => 'fan', 'FAN20G0354' => 'fan', 'FAN20G2429' => 'fan', 'FAN20G2658' => 'fan', 'FAN24G2343' => 'fan', 'FAN27G2362' => 'fan', 'FAN28G1765' => 'fan', 'FvH4_1g16020' => 'fve', 'FvH4_2g04890' => 'fve', 'FvH4_2g22270' => 'fve', 'FvH4_4g02630' => 'fve', 'FvH4_4g02640' => 'fve', 'FvH4_6g02650' => 'fve', 'Glyma.02G140600' => 'gma', 'Glyma.03G159900' => 'gma', 'Glyma.05G234800' => 'gma', 'Glyma.07G269600' => 'gma', 'Glyma.08G042300' => 'gma', 'Glyma.10G033500' => 'gma', 'Glyma.10G185200' => 'gma', 'Glyma.17G004300' => 'gma', 'Glyma.19G161900' => 'gma', 'Glyma.20G205100' => 'gma', 'Glyma.20G205200' => 'gma', 'Gohir.A01G139101' => 'ghi', 'Gohir.A02G035600' => 'ghi', 'Gohir.A02G117901' => 'ghi', 'Gohir.A07G210100' => 'ghi', 'Gohir.A07G210200' => 'ghi', 'Gohir.A08G061100' => 'ghi', 'Gohir.A09G223000' => 'ghi', 'Gohir.A09G223100' => 'ghi', 'Gohir.A10G113900' => 'ghi', 'Gohir.A10G114000' => 'ghi', 'Gohir.D02G042300' => 'ghi', 'Gohir.D07G216100' => 'ghi', 'Gohir.D07G216200' => 'ghi', 'Gohir.D08G070400' => 'ghi', 'Gohir.D09G225000' => 'ghi', 'Gohir.D09G225100' => 'ghi', 'Gohir.D10G152300' => 'ghi', 'Gohir.D10G153200' => 'ghi', 'Gohir.D11G133701' => 'ghi', 'Gorai.004G074100' => 'gra', 'Gorai.005G046800' => 'gra', 'Gorai.006G246500' => 'gra', 'Gorai.006G246600' => 'gra', 'Gorai.007G142900' => 'gra', 'Gorai.011G171000' => 'gra', 'Gorai.011G171100' => 'gra', 'Gorai.013G104300' => 'gra', 'Gorai.013G104400' => 'gra', 'GSVIVG01000754001' => 'vvi', 'GSVIVG01000756001' => 'vvi', 'GSVIVG01010903001' => 'vvi', 'GSVIVG01017623001' => 'vvi', 'GSVIVG01018113001' => 'vvi', 'GSVIVG01018116001' => 'vvi', 'GSVIVG01018118001' => 'vvi', 'HanXRQChr03g0076211' => 'han', 'HanXRQChr03g0092431' => 'han', 'HanXRQChr03g0092441' => 'han', 'HanXRQChr03g0092591' => 'han', 'HanXRQChr03g0092671' => 'han', 'HanXRQChr03g0092681' => 'han', 'HanXRQChr03g0092691' => 'han', 'HanXRQChr03g0092701' => 'han', 'HanXRQChr03g0092721' => 'han', 'HanXRQChr03g0092731' => 'han', 'HanXRQChr04g0113681' => 'han', 'HanXRQChr10g0281371' => 'han', 'HanXRQChr11g0337141' => 'han', 'HanXRQChr13g0424521' => 'han', 'HanXRQChr13g0424531' => 'han', 'HanXRQChr13g0424541' => 'han', 'HanXRQChr16g0498221' => 'han', 'Haze_04377' => 'cav', 'Haze_11298' => 'cav', 'Haze_24547' => 'cav', 'Haze_24550' => 'cav', 'Haze_26587' => 'cav', 'Hma1.2p1_0650F.1_g195410' => 'hma', 'Hma1.2p1_0893F.1_g233470' => 'hma', 'HPP92_006508' => 'vpl', 'HPP92_024780' => 'vpl', 'Hund02688' => 'sun', 'Hund09380' => 'sun', 'Hund09381' => 'sun', 'Hund09832' => 'sun', 'Hund09833' => 'sun', 'Hund11351' => 'sun', 'Hund11513' => 'sun', 'Lalb_Chr06g0162591' => 'lal', 'Lalb_Chr06g0162601' => 'lal', 'Lalb_Chr06g0169321' => 'lal', 'Lalb_Chr09g0330951' => 'lal', 'Lalb_Chr16g0387631' => 'lal', 'Lalb_Chr21g0306241' => 'lal', 'Lalb_Chr25g0290051' => 'lal', 'Lalb_Chr25g0290061' => 'lal', 'Lalb_Chr25g0290071' => 'lal', 'Lj1g0003876' => 'lja', 'Lj1P1207T36' => 'lonja', 'Lj2C1156G12' => 'lonja', 'Lj3A793G39' => 'lonja', 'Lj3C580G2' => 'lonja', 'Lj3C780G2' => 'lonja', 'Lj3C780T4' => 'lonja', 'Lj3C793G9' => 'lonja', 'Lj4g0012960' => 'lja', 'Lj5g0021252' => 'lja', 'Lj5g0021484' => 'lja', 'Lj5g0024528' => 'lja', 'Lj6A399T12' => 'lonja', 'Lj6A656G65' => 'lonja', 'Lsat_1_v5_gn_3_125500' => 'lsa', 'Lsat_1_v5_gn_3_125540' => 'lsa', 'Lsat_1_v5_gn_5_72701' => 'lsa', 'Lsat_1_v5_gn_8_91560' => 'lsa', 'Lsat_1_v5_gn_9_9640' => 'lsa', 'Manes.01G200600' => 'mes', 'Manes.01G200700' => 'mes', 'Manes.03G168900' => 'mes', 'Manes.03G169000' => 'mes', 'Manes.05G085801' => 'mes', 'Manes.05G086200' => 'mes', 'Manes.15G036700' => 'mes', 'Manes.15G036900' => 'mes', 'Mapoly0004s0172' => 'mpo', 'Mapoly0023s0001' => 'mpo', 'Mapoly0142s0012' => 'mpo', 'MBI01_g32854_MAGBIO' => 'mbi', 'MBI11_g24427_MAGBIO' => 'mbi', 'MBI11_g47319_MAGBIO' => 'mbi', 'MCO01G433' => 'mco', 'MD00G1187800' => 'mdo', 'MD04G1226500' => 'mdo', 'MD05G1203900' => 'mdo', 'MD10G1191100' => 'mdo', 'MD12G1243500' => 'mdo', 'MD13G1207000' => 'mdo', 'MD13G1207100' => 'mdo', 'MD16G1208600' => 'mdo', 'Medtr1g050352' => 'mtr', 'Medtr1g070385' => 'mtr', 'Medtr1g070450' => 'mtr', 'Medtr1g075200' => 'mtr', 'Medtr1g075250' => 'mtr', 'Medtr1g075260' => 'mtr', 'Medtr1g475250' => 'mtr', 'Medtr4g075450' => 'mtr', 'Medtr7g096300' => 'mtr', 'Medtr8g105110' => 'mtr', 'MELO3C006470.2' => 'cme', 'MELO3C006471.2' => 'cme', 'MELO3C020772.2' => 'cme', 'MELO3C026780.2' => 'cme', 'MELO3C026781.2' => 'cme', 'Migut.D00390' => 'egut', 'Migut.G00435' => 'egut', 'Migut.G00436' => 'egut', 'Migut.G00718' => 'egut', 'MSTRG.21891' => 'ama', 'MSTRG.26910' => 'ama', 'MSTRG.4099' => 'ama', 'MSTRG.9925' => 'ama', 'Nitab4.5_0000165g0010' => 'nta', 'Nitab4.5_0000209g0180' => 'nta', 'Nitab4.5_0000244g0440' => 'nta', 'Nitab4.5_0000525g0220' => 'nta', 'Nitab4.5_0001597g0020' => 'nta', 'Nitab4.5_0001878g0040' => 'nta', 'Nitab4.5_0001878g0060' => 'nta', 'Nitab4.5_0002838g0100' => 'nta', 'Nitab4.5_0002838g0120' => 'nta', 'Nitab4.5_0004798g0030' => 'nta', 'Nitab4.5_0005420g0010' => 'nta', 'Nitab4.5_0005507g0010' => 'nta', 'Nitab4.5_0005574g0020' => 'nta', 'Nitab4.5_0005838g0010' => 'nta', 'Nitab4.5_0010580g0020' => 'nta', 'Nn1g02599' => 'nnu', 'Nn1g02608' => 'nnu', 'Nn3g17742' => 'nnu', 'Nn3g19534' => 'nnu', 'Nn3g19535' => 'nnu', 'Oeu008790.1' => 'oeu', 'Oeu008792.1' => 'oeu', 'Oeu032590.1' => 'oeu', 'Oeu035349.1' => 'oeu', 'Oeu049791.1' => 'oeu', 'Os01g0774500' => 'osa', 'Os03g0628800' => 'osa', 'Os03g0798600' => 'osa', 'Os05g0508800' => 'osa', 'Peaxi162Scf00036g02018' => 'pax', 'Peaxi162Scf00578g00032' => 'pax', 'Peaxi162Scf00578g00317' => 'pax', 'Peaxi162Scf00785g00114' => 'pax', 'Peaxi162Scf00813g00119' => 'pax', 'Peaxi162Scf00906g00227' => 'pax', 'PGR004G0875' => 'pgr', 'PGR004G2424' => 'pgr', 'PGR031G1239' => 'pgr', 'PGR031G2474' => 'pgr', 'PGR044G0423' => 'pgr', 'PGSC0003DMG400001128' => 'stu', 'PGSC0003DMG400007336' => 'stu', 'PGSC0003DMG400016318' => 'stu', 'PGSC0003DMG400016319' => 'stu', 'PGSC0003DMG400018074' => 'stu', 'Phvul.001G157700' => 'pvu', 'Phvul.002G148550' => 'pvu', 'Phvul.002G320200' => 'pvu', 'Phvul.003G089200' => 'pvu', 'Phvul.007G126000' => 'pvu', 'Phvul.007G126100' => 'pvu', 'Phvul.007G178000' => 'pvu', 'Phvul.007G178200' => 'pvu', 'Potri.002G043000' => 'ptr', 'Potri.002G043200' => 'ptr', 'Potri.003G123750' => 'ptr', 'Potri.005G055401' => 'ptr', 'Potri.005G219700' => 'ptr', 'Potri.005G220000' => 'ptr', 'Potri.008G161901' => 'ptr', 'Potri.008G162000' => 'ptr', 'Potri.008G162400' => 'ptr', 'Potri.010G076900' => 'ptr', 'Pp3c12_9180' => 'ppa', 'Pp3c13_19770' => 'ppa', 'Pp3c14_22950' => 'ppa', 'Pp3c16_12160' => 'ppa', 'Pp3c27_7820' => 'ppa', 'Pp3c2_3490' => 'ppa', 'Pp3c3_23700' => 'ppa', 'Pp3c3_36520' => 'ppa', 'Pp3c4_15250' => 'ppa', 'PRCOL_00007002' => 'pco', 'Prupe.1G030600' => 'ppe', 'Prupe.1G030700' => 'ppe', 'Prupe.6G345200' => 'ppe', 'Prupe.8G230300' => 'ppe', 'Prupe.8G230500' => 'ppe', 'Psat3g059600' => 'psa', 'Psat5g200920' => 'psa', 'Psat6g056440' => 'psa', 'Psat6g057360' => 'psa', 'Psat6g134120' => 'psa', 'Psat6g134160' => 'psa', 'Psat7g008640' => 'psa', 'Psat7g185240' => 'psa', 'PSO017G1330' => 'pso', 'PSO063G6097' => 'pso', 'PSO170G0835' => 'pso', 'PSO170G2499' => 'pso', 'PSO210G5058' => 'pso', 'PSO210G6154' => 'pso', 'PSO585G0031' => 'pso', 'PSO832G0264' => 'pso', 'PSO832G4288' => 'pso', 'QL03p027355' => 'qlo', 'QL03p027430' => 'qlo', 'QL04p081380' => 'qlo', 'QL06p015642' => 'qlo', 'QL06p015650' => 'qlo', 'QL06p015686' => 'qlo', 'QL12p042927' => 'qlo', 'QL93p1863_0035' => 'qlo', 'RcHm_v2.0_Chr3g0450581' => 'rch', 'RcHm_v2.0_Chr4g0390371' => 'rch', 'RcHm_v2.0_Chr4g0390381' => 'rch', 'RcHm_v2.0_Chr4g0390491' => 'rch', 'RcHm_v2.0_Chr4g0390501' => 'rch', 'RcHm_v2.0_Chr6g0289231' => 'rch', 'Rhsim04G0190400' => 'rsi', 'Rhsim04G0190500' => 'rsi', 'Rhsim04G0190600' => 'rsi', 'Rhsim13G0031400' => 'rsi', 'Rhsim13G0165600' => 'rsi', 'RhsimUnG0114600' => 'rsi', 'RhsimUnG0114700' => 'rsi', 'Sabra02G0034800' => 'sbr', 'Sabra02G0035100' => 'sbr', 'Sabra05G0168600' => 'sbr', 'Sabra05G0168800' => 'sbr', 'Sabra08G0123700' => 'sbr', 'Sabra10G0031900' => 'sbr', 'Sabra13G0039000' => 'sbr', 'SalBow2G0782' => 'sbo', 'SalBow2G1403' => 'sbo', 'SalBow4G0074' => 'sbo', 'SalBow4G2635' => 'sbo', 'SalBow5G3010' => 'sbo', 'Sc05g0000870' => 'sci', 'Sc05g0000890' => 'sci', 'Sc13g0005000' => 'sci', 'Sc13g0005030' => 'sci', 'Sc19g0003790' => 'sci', 'Sc19g0003800' => 'sci', 'Sed0003467' => 'sed', 'Sed0009355' => 'sed', 'Sed0009894' => 'sed', 'Sed0011972' => 'sed', 'Sed0021483' => 'sed', 'Sed0021750' => 'sed', 'Sed0026279' => 'sed', 'SEGI_05312' => 'sgi', 'SEGI_10112' => 'sgi', 'SEGI_15835' => 'sgi', 'SEGI_30386' => 'sgi', 'SEGI_34122' => 'sgi', 'SEGI_35063' => 'sgi', 'SGA_v2.0_scaffold101G29794' => 'sas', 'SGA_v2.0_scaffold1G00573' => 'sas', 'SGA_v2.0_scaffold79G25637' => 'sas', 'SGA_v2.0_scaffold88G27283' => 'sas', 'SGA_v2.0_scaffold88G27285' => 'sas', 'SGA_v2.0_scaffold88G27331' => 'sas', 'SHI09937' => 'shi', 'SMO119G0302' => 'smo', 'SMO137G0231' => 'smo', 'SMO367G1151' => 'smo', 'Solyc02g082000.3' => 'sly', 'Solyc06g031670.3' => 'sly', 'Solyc06g053810.3' => 'sly', 'Solyc07g025457.1' => 'sly', 'Solyc08g059740.1' => 'sly', 'Solyc08g059750.3' => 'sly', 'Solyc09g083370.3' => 'sly', 'Solyc12g038950.3' => 'sly', 'Sopen02g026630' => 'spe', 'Sopen06g018930' => 'spe', 'Sopen06g018940' => 'spe', 'Sopen08g009460' => 'spe', 'Sopen09g032290' => 'spe', 'Sp1g03080' => 'spa', 'Sp1g03090' => 'spa', 'Sp1g05480' => 'spa', 'Sp2g07860' => 'spa', 'Sp2g08430' => 'spa', 'Sp2g08440' => 'spa', 'Sp2g26200' => 'spa', 'Sp4g13170' => 'spa', 'Sp6g33840' => 'spa', 'SpUn1204_0010' => 'spa', 'TAR365G0908' => 'tar', 'TAR381G1270' => 'tar', 'TAR381G1651' => 'tar', 'TAR625G1131' => 'tar', 'TAR633G0962' => 'tar', 'TAR633G1729' => 'tar', 'TAR633G1864' => 'tar', 'TAR636G0221' => 'tar', 'TAR636G0314' => 'tar', 'TAR636G3202' => 'tar', 'THA.LOC104800805' => 'tha', 'THA.LOC104801096' => 'tha', 'THA.LOC104801555' => 'tha', 'THA.LOC104808491' => 'tha', 'THA.LOC104808595' => 'tha', 'THA.LOC104815985' => 'tha', 'THA.LOC104822250' => 'tha', 'THA.LOC104826071' => 'tha', 'Thecc.01G265200' => 'tca', 'Thecc.01G265300' => 'tca', 'Thecc.01G265700' => 'tca', 'Thecc.03G109100' => 'tca', 'Thecc.04G245900' => 'tca', 'Thecc.04G246000' => 'tca', 'Thhalv10003334m.g' => 'esa', 'Thhalv10005508m.g' => 'esa', 'Thhalv10005643m.g' => 'esa', 'Thhalv10007316m.g' => 'esa', 'Thhalv10009006m.g' => 'esa', 'Thhalv10009309m.g' => 'esa', 'Thhalv10014917m.g' => 'esa', 'Thhalv10014919m.g' => 'esa', 'Thhalv10015393m.g' => 'esa', 'Thhalv10016515m.g' => 'esa', 'Thhalv10029242m.g' => 'esa', 'TPR.G16654' => 'tpr', 'TPR.G20589' => 'tpr', 'TPR.G23029' => 'tpr', 'TPR.G27731' => 'tpr', 'TPR.G28889' => 'tpr', 'TPR.G28899' => 'tpr', 'TPR.G30846' => 'tpr', 'TPR.G5452' => 'tpr', 'TPR.G5713' => 'tpr', 'TPR.G9046' => 'tpr', 'TPR.G9061' => 'tpr', 'TWI09G1075' => 'twi', 'TWI12G0806' => 'twi', 'TWI18G0108' => 'twi', 'TWI53G1361' => 'twi', 'TWI73G0185' => 'twi', 'TWI73G0427' => 'twi', 'unitig_37.g12001' => 'ugi', 'unitig_747.g21660' => 'ugi', 'unitig_748.g7232' => 'ugi', 'unitig_748.g7315' => 'ugi', 'unitig_85.g27262' => 'ugi', 'unitig_92.g28220' => 'ugi', 'vmacro02632' => 'vma', 'vmacro08410' => 'vma', 'vmacro08411' => 'vma', 'vmacro15407' => 'vma', 'VMungo0251G3619' => 'vmu', 'VMungo0720G1204' => 'vmu', 'VMungo0720G1918' => 'vmu', 'VMungo0720G2387' => 'vmu', 'VMungo0720G2961' => 'vmu', 'VMungo1215G2154' => 'vmu', 'VMungo1383G2411' => 'vmu', 'Zm00001eb051130' => 'zma', 'Zm00001eb116830' => 'zma', 'Zm00001eb116850' => 'zma', 'Zm00001eb151740' => 'zma', 'Zm00001eb292360' => 'zma', 'Zm00001eb301640' => 'zma' ) $gf_id = 'HOM05D000856' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000856' ) $data_identifier = 'HOM05D000856' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 13, 'ath' => (int) 10, 'atr' => (int) 1, 'acertr' => (int) 8, 'cqu' => (int) 6, 'bca' => (int) 21, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 11, 'car' => (int) 9, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 8, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 5, 'fan' => (int) 16, 'fve' => (int) 6, 'gma' => (int) 11, 'ghi' => (int) 19, 'gra' => (int) 9, 'vvi' => (int) 7, 'han' => (int) 17, 'cav' => (int) 5, 'hma' => (int) 2, 'vpl' => (int) 2, 'sun' => (int) 7, 'lal' => (int) 9, 'lja' => (int) 5, 'lonja' => (int) 9, 'lsa' => (int) 5, 'mes' => (int) 8, 'mpo' => (int) 3, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 10, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 15, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 9, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 9, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 6, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 5, 'spa' => (int) 10, 'tar' => (int) 10, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 11, 'tpr' => (int) 11, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 4, 'vmu' => (int) 7, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb301640' $species_info = array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ) $local_species = 'gra' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000856', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p00010' => 'bna', 'A03p04160' => 'bna', 'A03p17160' => 'bna', 'A04p23370' => 'bna', 'A05p14860' => 'bna', 'A08p37020' => 'bna', 'A09p08050' => 'bna', 'A09p66800' => 'bna', 'A09p67940' => 'bna', 'A10p02680' => 'bna', 'A10p05320' => 'bna', 'Aa31LG1G20560' => 'aar', 'Aa31LG1G20610' => 'aar', 'Aa31LG1G7810' => 'aar', 'Aa31LG5G3590' => 'aar', 'Aa31LG5G6140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3819' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4683' => 'aag', 'Actinidia04480' => 'ach', 'Actinidia05466' => 'ach', 'Actinidia08445' => 'ach', 'Actinidia21170' => 'ach', 'Actinidia24812' => 'ach', 'Actinidia24951' => 'ach', 'Actinidia40088' => 'ach', 'Ah.02g111660' => 'amhyb', 'Ah.11g048900' => 'amhyb', 'Ah.11g049910' => 'amhyb', 'AL1G13870' => 'aly', 'AL1G13880' => 'aly', 'AL1G16760' => 'aly', 'AL390U10020' => 'aly', 'AL4G25520' => 'aly', 'AL6G19890' => 'aly', 'AL6G19900' => 'aly', 'AL6G19910' => 'aly', 'AL8G40100' => 'aly', 'Aqoxy2G03562' => 'aox', 'Aqoxy5G00316' => 'aox', 'Aqoxy5G00926' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1628KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1H403S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2FU6SJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.882I6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8YRY2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YN1SN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AF70II' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZA8L1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F916KL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHRD8H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KTZ8QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S22EMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8M29T' => 'arhy', 'AT1G04270' => 'ath', 'AT1G04280' => 'ath', 'AT1G06750' => 'ath', 'AT1G33850' => 'ath', 'AT2G30630' => 'ath', 'AT5G09490' => 'ath', 'AT5G09500' => 'ath', 'AT5G09510' => 'ath', 'AT5G43640' => 'ath', 'AT5G63070' => 'ath', 'ATR0605G315' => 'atr', 'Atru.chr11.175' => 'acertr', 'Atru.chr11.653' => 'acertr', 'Atru.chr3.1616' => 'acertr', 'Atru.chr4.2230' => 'acertr', 'Atru.chr4.2232' => 'acertr', 'Atru.chr5.1598' => 'acertr', 'Atru.chr5.1600' => 'acertr', 'Atru.chr5.2188' => 'acertr', 'AUR62008326' => 'cqu', 'AUR62011922' => 'cqu', 'AUR62011924' => 'cqu', 'AUR62021771' => 'cqu', 'AUR62032237' => 'cqu', 'AUR62032240' => 'cqu', 'BcaB01g05572' => 'bca', 'BcaB02g10337' => 'bca', 'BcaB04g19944' => 'bca', 'BcaB05g21548' => 'bca', 'BcaB05g21549' => 'bca', 'BcaB05g23227' => 'bca', 'BcaB06g26256' => 'bca', 'BcaB06g26257' => 'bca', 'BcaB06g28379' => 'bca', 'BcaC02g11159' => 'bca', 'BcaC03g13258' => 'bca', 'BcaC03g13259' => 'bca', 'BcaC05g24456' => 'bca', 'BcaC05g24457' => 'bca', 'BcaC07g36922' => 'bca', 'BcaC07g36923' => 'bca', 'BcaC07g42050' => 'bca', 'BcaC07g42176' => 'bca', 'BcaC07g42195' => 'bca', 'BcaC07g42196' => 'bca', 'BcaNung06674' => 'bca', 'BolC2t06351H' => 'bol', 'BolC2t06352H' => 'bol', 'BolC3t12993H' => 'bol', 'BolC4t23525H' => 'bol', 'BolC4t27475H' => 'bol', 'BolC5t29025H' => 'bol', 'BolC5t29026H' => 'bol', 'BolC8t46898H' => 'bol', 'BolC8t46899H' => 'bol', 'BolC8t52630H' => 'bol', 'BolC8t52765H' => 'bol', 'BolC9t53824H' => 'bol', 'BraA03t09760Z' => 'bra', 'BraA03t10990Z' => 'bra', 'BraA05t20413Z' => 'bra', 'BraA08t35602Z' => 'bra', 'BraA09t36458Z' => 'bra', 'BraA09t42018Z' => 'bra', 'BraA09t42129Z' => 'bra', 'BraA10t42536Z' => 'bra', 'BraA10t42537Z' => 'bra', 'C01p10690' => 'bna', 'C02p03890' => 'bna', 'C02p03900' => 'bna', 'C03p04620' => 'bna', 'C04p19870' => 'bna', 'C04p59670' => 'bna', 'C05p02460' => 'bna', 'C05p02470' => 'bna', 'C08p00980' => 'bna', 'C08p00990' => 'bna', 'C08p51030' => 'bna', 'C08p52360' => 'bna', 'C09p09120' => 'bna', 'CAN.G19.15' => 'can', 'CAN.G251.10' => 'can', 'CAN.G251.9' => 'can', 'CAN.G398.24' => 'can', 'CAN.G410.32' => 'can', 'CAN.G881.2' => 'can', 'CANSAT01G3025' => 'cansat', 'CANSAT78G1211' => 'cansat', 'CANSAT78G1218' => 'cansat', 'CANSAT78G1521' => 'cansat', 'CANSAT78G1670' => 'cansat', 'CARHR003600' => 'chi', 'CARHR003610' => 'chi', 'CARHR006290' => 'chi', 'CARHR006430' => 'chi', 'CARHR124110' => 'chi', 'CARHR203870' => 'chi', 'CARHR203880' => 'chi', 'CARHR203890' => 'chi', 'CARHR276880' => 'chi', 'Carub.0001s0346' => 'cru', 'Carub.0001s0347' => 'cru', 'Carub.0001s0607' => 'cru', 'Carub.0003s2768' => 'cru', 'Carub.0003s2769' => 'cru', 'Carub.0004s1178' => 'cru', 'Carub.0006s0806' => 'cru', 'Carub.0006s0807' => 'cru', 'Carub.0006s0808' => 'cru', 'Carub.0008s0501' => 'cru', 'Carub.0008s2379' => 'cru', 'Ca_08655_v3' => 'car', 'Ca_08922_v3' => 'car', 'Ca_08923_v3' => 'car', 'Ca_09119_v3' => 'car', 'Ca_09703_v3' => 'car', 'Ca_09705_v3' => 'car', 'Ca_09835_v3' => 'car', 'Ca_26403_v3' => 'car', 'Ca_30719_v3' => 'car', 'CBR_g17958' => 'cbr', 'CBR_g40516' => 'cbr', 'Cc00_g05350' => 'ccan', 'Cc01_g18690' => 'ccan', 'Cc03_g04830' => 'ccan', 'Cc03_g04850' => 'ccan', 'CDE02G4469' => 'cde', 'CDE06G0883' => 'cde', 'CDE06G1295' => 'cde', 'CDE06G1390' => 'cde', 'CDE07G0584' => 'cde', 'CDE07G1084' => 'cde', 'CDE08G1259' => 'cde', 'Cfa002341' => 'cfa', 'Cfa024337' => 'cfa', 'Ciclev10004749m.g' => 'ccl', 'Ciclev10006127m.g' => 'ccl', 'Ciclev10019720m.g' => 'ccl', 'Ciclev10022652m.g' => 'ccl', 'CiPaw.01G190400' => 'cil', 'CiPaw.01G190500' => 'cil', 'CiPaw.02G116400' => 'cil', 'CiPaw.02G116500' => 'cil', 'CiPaw.04G183000' => 'cil', 'CiPaw.04G183300' => 'cil', 'ClCG05G004610' => 'cla', 'ClCG05G004620' => 'cla', 'ClCG06G006730' => 'cla', 'ClCG06G006740' => 'cla', 'ClCG11G003690' => 'cla', 'COL.COLO4_08276' => 'col', 'COL.COLO4_08277' => 'col', 'COL.COLO4_15787' => 'col', 'COL.COLO4_15789' => 'col', 'Cpa.g.c44815' => 'cpa', 'Cpa.g.sc52.144' => 'cpa', 'Cpa.g.sc58.46' => 'cpa', 'Cpa.g.sc58.47' => 'cpa', 'Cre08.g360900' => 'cre', 'CsaV3_2G013030' => 'csa', 'CsaV3_2G013050' => 'csa', 'CsaV3_2G015620' => 'csa', 'CsaV3_3G012590' => 'csa', 'CsaV3_3G012600' => 'csa', 'CSS0001641' => 'camsi', 'CSS0008310' => 'camsi', 'CSS0013011' => 'camsi', 'CSS0017147' => 'camsi', 'CSS0022970' => 'camsi', 'CSS0025655' => 'camsi', 'CSS0028665' => 'camsi', 'CSS0029117' => 'camsi', 'CSS0032024' => 'camsi', 'CSS0039681' => 'camsi', 'CSS0046516' => 'camsi', 'CSS0050307' => 'camsi', 'DCAR_005871' => 'dca', 'DCAR_007342' => 'dca', 'DCAR_024228' => 'dca', 'DCAR_027277' => 'dca', 'DCAR_030718' => 'dca', 'Dinv20287' => 'din', 'Dinv22461' => 'din', 'Dinv22464' => 'din', 'Dinv29912' => 'din', 'Dinv29913' => 'din', 'Dinv34580' => 'din', 'Dinv34582' => 'din', 'Dinv44632' => 'din', 'Duzib052G0266' => 'dzi', 'Duzib133G0907' => 'dzi', 'Duzib133G1034' => 'dzi', 'Duzib138G0207' => 'dzi', 'Duzib138G0491' => 'dzi', 'Duzib151G0812' => 'dzi', 'Duzib151G1166' => 'dzi', 'Duzib168G0192' => 'dzi', 'Duzib211G0077' => 'dzi', 'Duzib212G0429' => 'dzi', 'Duzib212G0472' => 'dzi', 'ECA233G2617' => 'eca', 'ECA236G4188' => 'eca', 'ECA240G0936' => 'eca', 'ECA240G1129' => 'eca', 'ECA247G0623' => 'eca', 'EL10Ac5g10451' => 'bvu', 'EL10Ac5g10453' => 'bvu', 'EL10Ac5g10894' => 'bvu', 'Eucgr.H00192' => 'egr', 'Eucgr.H00193' => 'egr', 'Eucgr.H00194' => 'egr', 'Eucgr.J01562' => 'egr', 'Eucgr.K03301' => 'egr', 'FAN02G0632' => 'fan', 'FAN05G5378' => 'fan', 'FAN09G3247' => 'fan', 'FAN12G0435' => 'fan', 'FAN12G2426' => 'fan', 'FAN14G1707' => 'fan', 'FAN14G4725' => 'fan', 'FAN15G2071' => 'fan', 'FAN17G3065' => 'fan', 'FAN19G1376' => 'fan', 'FAN20G0354' => 'fan', 'FAN20G2429' => 'fan', 'FAN20G2658' => 'fan', 'FAN24G2343' => 'fan', 'FAN27G2362' => 'fan', 'FAN28G1765' => 'fan', 'FvH4_1g16020' => 'fve', 'FvH4_2g04890' => 'fve', 'FvH4_2g22270' => 'fve', 'FvH4_4g02630' => 'fve', 'FvH4_4g02640' => 'fve', 'FvH4_6g02650' => 'fve', 'Glyma.02G140600' => 'gma', 'Glyma.03G159900' => 'gma', 'Glyma.05G234800' => 'gma', 'Glyma.07G269600' => 'gma', 'Glyma.08G042300' => 'gma', 'Glyma.10G033500' => 'gma', 'Glyma.10G185200' => 'gma', 'Glyma.17G004300' => 'gma', 'Glyma.19G161900' => 'gma', 'Glyma.20G205100' => 'gma', 'Glyma.20G205200' => 'gma', 'Gohir.A01G139101' => 'ghi', 'Gohir.A02G035600' => 'ghi', 'Gohir.A02G117901' => 'ghi', 'Gohir.A07G210100' => 'ghi', 'Gohir.A07G210200' => 'ghi', 'Gohir.A08G061100' => 'ghi', 'Gohir.A09G223000' => 'ghi', 'Gohir.A09G223100' => 'ghi', 'Gohir.A10G113900' => 'ghi', 'Gohir.A10G114000' => 'ghi', 'Gohir.D02G042300' => 'ghi', 'Gohir.D07G216100' => 'ghi', 'Gohir.D07G216200' => 'ghi', 'Gohir.D08G070400' => 'ghi', 'Gohir.D09G225000' => 'ghi', 'Gohir.D09G225100' => 'ghi', 'Gohir.D10G152300' => 'ghi', 'Gohir.D10G153200' => 'ghi', 'Gohir.D11G133701' => 'ghi', 'Gorai.004G074100' => 'gra', 'Gorai.005G046800' => 'gra', 'Gorai.006G246500' => 'gra', 'Gorai.006G246600' => 'gra', 'Gorai.007G142900' => 'gra', 'Gorai.011G171000' => 'gra', 'Gorai.011G171100' => 'gra', 'Gorai.013G104300' => 'gra', 'Gorai.013G104400' => 'gra', 'GSVIVG01000754001' => 'vvi', 'GSVIVG01000756001' => 'vvi', 'GSVIVG01010903001' => 'vvi', 'GSVIVG01017623001' => 'vvi', 'GSVIVG01018113001' => 'vvi', 'GSVIVG01018116001' => 'vvi', 'GSVIVG01018118001' => 'vvi', 'HanXRQChr03g0076211' => 'han', 'HanXRQChr03g0092431' => 'han', 'HanXRQChr03g0092441' => 'han', 'HanXRQChr03g0092591' => 'han', 'HanXRQChr03g0092671' => 'han', 'HanXRQChr03g0092681' => 'han', 'HanXRQChr03g0092691' => 'han', 'HanXRQChr03g0092701' => 'han', 'HanXRQChr03g0092721' => 'han', 'HanXRQChr03g0092731' => 'han', 'HanXRQChr04g0113681' => 'han', 'HanXRQChr10g0281371' => 'han', 'HanXRQChr11g0337141' => 'han', 'HanXRQChr13g0424521' => 'han', 'HanXRQChr13g0424531' => 'han', 'HanXRQChr13g0424541' => 'han', 'HanXRQChr16g0498221' => 'han', 'Haze_04377' => 'cav', 'Haze_11298' => 'cav', 'Haze_24547' => 'cav', 'Haze_24550' => 'cav', 'Haze_26587' => 'cav', 'Hma1.2p1_0650F.1_g195410' => 'hma', 'Hma1.2p1_0893F.1_g233470' => 'hma', 'HPP92_006508' => 'vpl', 'HPP92_024780' => 'vpl', 'Hund02688' => 'sun', 'Hund09380' => 'sun', 'Hund09381' => 'sun', 'Hund09832' => 'sun', 'Hund09833' => 'sun', 'Hund11351' => 'sun', 'Hund11513' => 'sun', 'Lalb_Chr06g0162591' => 'lal', 'Lalb_Chr06g0162601' => 'lal', 'Lalb_Chr06g0169321' => 'lal', 'Lalb_Chr09g0330951' => 'lal', 'Lalb_Chr16g0387631' => 'lal', 'Lalb_Chr21g0306241' => 'lal', 'Lalb_Chr25g0290051' => 'lal', 'Lalb_Chr25g0290061' => 'lal', 'Lalb_Chr25g0290071' => 'lal', 'Lj1g0003876' => 'lja', 'Lj1P1207T36' => 'lonja', 'Lj2C1156G12' => 'lonja', 'Lj3A793G39' => 'lonja', 'Lj3C580G2' => 'lonja', 'Lj3C780G2' => 'lonja', 'Lj3C780T4' => 'lonja', 'Lj3C793G9' => 'lonja', 'Lj4g0012960' => 'lja', 'Lj5g0021252' => 'lja', 'Lj5g0021484' => 'lja', 'Lj5g0024528' => 'lja', 'Lj6A399T12' => 'lonja', 'Lj6A656G65' => 'lonja', 'Lsat_1_v5_gn_3_125500' => 'lsa', 'Lsat_1_v5_gn_3_125540' => 'lsa', 'Lsat_1_v5_gn_5_72701' => 'lsa', 'Lsat_1_v5_gn_8_91560' => 'lsa', 'Lsat_1_v5_gn_9_9640' => 'lsa', 'Manes.01G200600' => 'mes', 'Manes.01G200700' => 'mes', 'Manes.03G168900' => 'mes', 'Manes.03G169000' => 'mes', 'Manes.05G085801' => 'mes', 'Manes.05G086200' => 'mes', 'Manes.15G036700' => 'mes', 'Manes.15G036900' => 'mes', 'Mapoly0004s0172' => 'mpo', 'Mapoly0023s0001' => 'mpo', 'Mapoly0142s0012' => 'mpo', 'MBI01_g32854_MAGBIO' => 'mbi', 'MBI11_g24427_MAGBIO' => 'mbi', 'MBI11_g47319_MAGBIO' => 'mbi', 'MCO01G433' => 'mco', 'MD00G1187800' => 'mdo', 'MD04G1226500' => 'mdo', 'MD05G1203900' => 'mdo', 'MD10G1191100' => 'mdo', 'MD12G1243500' => 'mdo', 'MD13G1207000' => 'mdo', 'MD13G1207100' => 'mdo', 'MD16G1208600' => 'mdo', 'Medtr1g050352' => 'mtr', 'Medtr1g070385' => 'mtr', 'Medtr1g070450' => 'mtr', 'Medtr1g075200' => 'mtr', 'Medtr1g075250' => 'mtr', 'Medtr1g075260' => 'mtr', 'Medtr1g475250' => 'mtr', 'Medtr4g075450' => 'mtr', 'Medtr7g096300' => 'mtr', 'Medtr8g105110' => 'mtr', 'MELO3C006470.2' => 'cme', 'MELO3C006471.2' => 'cme', 'MELO3C020772.2' => 'cme', 'MELO3C026780.2' => 'cme', 'MELO3C026781.2' => 'cme', 'Migut.D00390' => 'egut', 'Migut.G00435' => 'egut', 'Migut.G00436' => 'egut', 'Migut.G00718' => 'egut', 'MSTRG.21891' => 'ama', 'MSTRG.26910' => 'ama', 'MSTRG.4099' => 'ama', 'MSTRG.9925' => 'ama', 'Nitab4.5_0000165g0010' => 'nta', 'Nitab4.5_0000209g0180' => 'nta', 'Nitab4.5_0000244g0440' => 'nta', 'Nitab4.5_0000525g0220' => 'nta', 'Nitab4.5_0001597g0020' => 'nta', 'Nitab4.5_0001878g0040' => 'nta', 'Nitab4.5_0001878g0060' => 'nta', 'Nitab4.5_0002838g0100' => 'nta', 'Nitab4.5_0002838g0120' => 'nta', 'Nitab4.5_0004798g0030' => 'nta', 'Nitab4.5_0005420g0010' => 'nta', 'Nitab4.5_0005507g0010' => 'nta', 'Nitab4.5_0005574g0020' => 'nta', 'Nitab4.5_0005838g0010' => 'nta', 'Nitab4.5_0010580g0020' => 'nta', 'Nn1g02599' => 'nnu', 'Nn1g02608' => 'nnu', 'Nn3g17742' => 'nnu', 'Nn3g19534' => 'nnu', 'Nn3g19535' => 'nnu', 'Oeu008790.1' => 'oeu', 'Oeu008792.1' => 'oeu', 'Oeu032590.1' => 'oeu', 'Oeu035349.1' => 'oeu', 'Oeu049791.1' => 'oeu', 'Os01g0774500' => 'osa', 'Os03g0628800' => 'osa', 'Os03g0798600' => 'osa', 'Os05g0508800' => 'osa', 'Peaxi162Scf00036g02018' => 'pax', 'Peaxi162Scf00578g00032' => 'pax', 'Peaxi162Scf00578g00317' => 'pax', 'Peaxi162Scf00785g00114' => 'pax', 'Peaxi162Scf00813g00119' => 'pax', 'Peaxi162Scf00906g00227' => 'pax', 'PGR004G0875' => 'pgr', 'PGR004G2424' => 'pgr', 'PGR031G1239' => 'pgr', 'PGR031G2474' => 'pgr', 'PGR044G0423' => 'pgr', 'PGSC0003DMG400001128' => 'stu', 'PGSC0003DMG400007336' => 'stu', 'PGSC0003DMG400016318' => 'stu', 'PGSC0003DMG400016319' => 'stu', 'PGSC0003DMG400018074' => 'stu', 'Phvul.001G157700' => 'pvu', 'Phvul.002G148550' => 'pvu', 'Phvul.002G320200' => 'pvu', 'Phvul.003G089200' => 'pvu', 'Phvul.007G126000' => 'pvu', 'Phvul.007G126100' => 'pvu', 'Phvul.007G178000' => 'pvu', 'Phvul.007G178200' => 'pvu', 'Potri.002G043000' => 'ptr', 'Potri.002G043200' => 'ptr', 'Potri.003G123750' => 'ptr', 'Potri.005G055401' => 'ptr', 'Potri.005G219700' => 'ptr', 'Potri.005G220000' => 'ptr', 'Potri.008G161901' => 'ptr', 'Potri.008G162000' => 'ptr', 'Potri.008G162400' => 'ptr', 'Potri.010G076900' => 'ptr', 'Pp3c12_9180' => 'ppa', 'Pp3c13_19770' => 'ppa', 'Pp3c14_22950' => 'ppa', 'Pp3c16_12160' => 'ppa', 'Pp3c27_7820' => 'ppa', 'Pp3c2_3490' => 'ppa', 'Pp3c3_23700' => 'ppa', 'Pp3c3_36520' => 'ppa', 'Pp3c4_15250' => 'ppa', 'PRCOL_00007002' => 'pco', 'Prupe.1G030600' => 'ppe', 'Prupe.1G030700' => 'ppe', 'Prupe.6G345200' => 'ppe', 'Prupe.8G230300' => 'ppe', 'Prupe.8G230500' => 'ppe', 'Psat3g059600' => 'psa', 'Psat5g200920' => 'psa', 'Psat6g056440' => 'psa', 'Psat6g057360' => 'psa', 'Psat6g134120' => 'psa', 'Psat6g134160' => 'psa', 'Psat7g008640' => 'psa', 'Psat7g185240' => 'psa', 'PSO017G1330' => 'pso', 'PSO063G6097' => 'pso', 'PSO170G0835' => 'pso', 'PSO170G2499' => 'pso', 'PSO210G5058' => 'pso', 'PSO210G6154' => 'pso', 'PSO585G0031' => 'pso', 'PSO832G0264' => 'pso', 'PSO832G4288' => 'pso', 'QL03p027355' => 'qlo', 'QL03p027430' => 'qlo', 'QL04p081380' => 'qlo', 'QL06p015642' => 'qlo', 'QL06p015650' => 'qlo', 'QL06p015686' => 'qlo', 'QL12p042927' => 'qlo', 'QL93p1863_0035' => 'qlo', 'RcHm_v2.0_Chr3g0450581' => 'rch', 'RcHm_v2.0_Chr4g0390371' => 'rch', 'RcHm_v2.0_Chr4g0390381' => 'rch', 'RcHm_v2.0_Chr4g0390491' => 'rch', 'RcHm_v2.0_Chr4g0390501' => 'rch', 'RcHm_v2.0_Chr6g0289231' => 'rch', 'Rhsim04G0190400' => 'rsi', 'Rhsim04G0190500' => 'rsi', 'Rhsim04G0190600' => 'rsi', 'Rhsim13G0031400' => 'rsi', 'Rhsim13G0165600' => 'rsi', 'RhsimUnG0114600' => 'rsi', 'RhsimUnG0114700' => 'rsi', 'Sabra02G0034800' => 'sbr', 'Sabra02G0035100' => 'sbr', 'Sabra05G0168600' => 'sbr', 'Sabra05G0168800' => 'sbr', 'Sabra08G0123700' => 'sbr', 'Sabra10G0031900' => 'sbr', 'Sabra13G0039000' => 'sbr', 'SalBow2G0782' => 'sbo', 'SalBow2G1403' => 'sbo', 'SalBow4G0074' => 'sbo', 'SalBow4G2635' => 'sbo', 'SalBow5G3010' => 'sbo', 'Sc05g0000870' => 'sci', 'Sc05g0000890' => 'sci', 'Sc13g0005000' => 'sci', 'Sc13g0005030' => 'sci', 'Sc19g0003790' => 'sci', 'Sc19g0003800' => 'sci', 'Sed0003467' => 'sed', 'Sed0009355' => 'sed', 'Sed0009894' => 'sed', 'Sed0011972' => 'sed', 'Sed0021483' => 'sed', 'Sed0021750' => 'sed', 'Sed0026279' => 'sed', 'SEGI_05312' => 'sgi', 'SEGI_10112' => 'sgi', 'SEGI_15835' => 'sgi', 'SEGI_30386' => 'sgi', 'SEGI_34122' => 'sgi', 'SEGI_35063' => 'sgi', 'SGA_v2.0_scaffold101G29794' => 'sas', 'SGA_v2.0_scaffold1G00573' => 'sas', 'SGA_v2.0_scaffold79G25637' => 'sas', 'SGA_v2.0_scaffold88G27283' => 'sas', 'SGA_v2.0_scaffold88G27285' => 'sas', 'SGA_v2.0_scaffold88G27331' => 'sas', 'SHI09937' => 'shi', 'SMO119G0302' => 'smo', 'SMO137G0231' => 'smo', 'SMO367G1151' => 'smo', 'Solyc02g082000.3' => 'sly', 'Solyc06g031670.3' => 'sly', 'Solyc06g053810.3' => 'sly', 'Solyc07g025457.1' => 'sly', 'Solyc08g059740.1' => 'sly', 'Solyc08g059750.3' => 'sly', 'Solyc09g083370.3' => 'sly', 'Solyc12g038950.3' => 'sly', 'Sopen02g026630' => 'spe', 'Sopen06g018930' => 'spe', 'Sopen06g018940' => 'spe', 'Sopen08g009460' => 'spe', 'Sopen09g032290' => 'spe', 'Sp1g03080' => 'spa', 'Sp1g03090' => 'spa', 'Sp1g05480' => 'spa', 'Sp2g07860' => 'spa', 'Sp2g08430' => 'spa', 'Sp2g08440' => 'spa', 'Sp2g26200' => 'spa', 'Sp4g13170' => 'spa', 'Sp6g33840' => 'spa', 'SpUn1204_0010' => 'spa', 'TAR365G0908' => 'tar', 'TAR381G1270' => 'tar', 'TAR381G1651' => 'tar', 'TAR625G1131' => 'tar', 'TAR633G0962' => 'tar', 'TAR633G1729' => 'tar', 'TAR633G1864' => 'tar', 'TAR636G0221' => 'tar', 'TAR636G0314' => 'tar', 'TAR636G3202' => 'tar', 'THA.LOC104800805' => 'tha', 'THA.LOC104801096' => 'tha', 'THA.LOC104801555' => 'tha', 'THA.LOC104808491' => 'tha', 'THA.LOC104808595' => 'tha', 'THA.LOC104815985' => 'tha', 'THA.LOC104822250' => 'tha', 'THA.LOC104826071' => 'tha', 'Thecc.01G265200' => 'tca', 'Thecc.01G265300' => 'tca', 'Thecc.01G265700' => 'tca', 'Thecc.03G109100' => 'tca', 'Thecc.04G245900' => 'tca', 'Thecc.04G246000' => 'tca', 'Thhalv10003334m.g' => 'esa', 'Thhalv10005508m.g' => 'esa', 'Thhalv10005643m.g' => 'esa', 'Thhalv10007316m.g' => 'esa', 'Thhalv10009006m.g' => 'esa', 'Thhalv10009309m.g' => 'esa', 'Thhalv10014917m.g' => 'esa', 'Thhalv10014919m.g' => 'esa', 'Thhalv10015393m.g' => 'esa', 'Thhalv10016515m.g' => 'esa', 'Thhalv10029242m.g' => 'esa', 'TPR.G16654' => 'tpr', 'TPR.G20589' => 'tpr', 'TPR.G23029' => 'tpr', 'TPR.G27731' => 'tpr', 'TPR.G28889' => 'tpr', 'TPR.G28899' => 'tpr', 'TPR.G30846' => 'tpr', 'TPR.G5452' => 'tpr', 'TPR.G5713' => 'tpr', 'TPR.G9046' => 'tpr', 'TPR.G9061' => 'tpr', 'TWI09G1075' => 'twi', 'TWI12G0806' => 'twi', 'TWI18G0108' => 'twi', 'TWI53G1361' => 'twi', 'TWI73G0185' => 'twi', 'TWI73G0427' => 'twi', 'unitig_37.g12001' => 'ugi', 'unitig_747.g21660' => 'ugi', 'unitig_748.g7232' => 'ugi', 'unitig_748.g7315' => 'ugi', 'unitig_85.g27262' => 'ugi', 'unitig_92.g28220' => 'ugi', 'vmacro02632' => 'vma', 'vmacro08410' => 'vma', 'vmacro08411' => 'vma', 'vmacro15407' => 'vma', 'VMungo0251G3619' => 'vmu', 'VMungo0720G1204' => 'vmu', 'VMungo0720G1918' => 'vmu', 'VMungo0720G2387' => 'vmu', 'VMungo0720G2961' => 'vmu', 'VMungo1215G2154' => 'vmu', 'VMungo1383G2411' => 'vmu', 'Zm00001eb051130' => 'zma', 'Zm00001eb116830' => 'zma', 'Zm00001eb116850' => 'zma', 'Zm00001eb151740' => 'zma', 'Zm00001eb292360' => 'zma', 'Zm00001eb301640' => 'zma' ), 'gf_id' => 'HOM05D000856', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000856' ), 'data_identifier' => 'HOM05D000856', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000856', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p00010' => 'bna', 'A03p04160' => 'bna', 'A03p17160' => 'bna', 'A04p23370' => 'bna', 'A05p14860' => 'bna', 'A08p37020' => 'bna', 'A09p08050' => 'bna', 'A09p66800' => 'bna', 'A09p67940' => 'bna', 'A10p02680' => 'bna', 'A10p05320' => 'bna', 'Aa31LG1G20560' => 'aar', 'Aa31LG1G20610' => 'aar', 'Aa31LG1G7810' => 'aar', 'Aa31LG5G3590' => 'aar', 'Aa31LG5G6140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3819' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4683' => 'aag', 'Actinidia04480' => 'ach', 'Actinidia05466' => 'ach', 'Actinidia08445' => 'ach', 'Actinidia21170' => 'ach', 'Actinidia24812' => 'ach', 'Actinidia24951' => 'ach', 'Actinidia40088' => 'ach', 'Ah.02g111660' => 'amhyb', 'Ah.11g048900' => 'amhyb', 'Ah.11g049910' => 'amhyb', 'AL1G13870' => 'aly', 'AL1G13880' => 'aly', 'AL1G16760' => 'aly', 'AL390U10020' => 'aly', 'AL4G25520' => 'aly', 'AL6G19890' => 'aly', 'AL6G19900' => 'aly', 'AL6G19910' => 'aly', 'AL8G40100' => 'aly', 'Aqoxy2G03562' => 'aox', 'Aqoxy5G00316' => 'aox', 'Aqoxy5G00926' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1628KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1H403S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2FU6SJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.882I6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8YRY2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YN1SN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AF70II' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZA8L1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F916KL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHRD8H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KTZ8QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S22EMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8M29T' => 'arhy', 'AT1G04270' => 'ath', 'AT1G04280' => 'ath', 'AT1G06750' => 'ath', 'AT1G33850' => 'ath', 'AT2G30630' => 'ath', 'AT5G09490' => 'ath', 'AT5G09500' => 'ath', 'AT5G09510' => 'ath', 'AT5G43640' => 'ath', 'AT5G63070' => 'ath', 'ATR0605G315' => 'atr', 'Atru.chr11.175' => 'acertr', 'Atru.chr11.653' => 'acertr', 'Atru.chr3.1616' => 'acertr', 'Atru.chr4.2230' => 'acertr', 'Atru.chr4.2232' => 'acertr', 'Atru.chr5.1598' => 'acertr', 'Atru.chr5.1600' => 'acertr', 'Atru.chr5.2188' => 'acertr', 'AUR62008326' => 'cqu', 'AUR62011922' => 'cqu', 'AUR62011924' => 'cqu', 'AUR62021771' => 'cqu', 'AUR62032237' => 'cqu', 'AUR62032240' => 'cqu', 'BcaB01g05572' => 'bca', 'BcaB02g10337' => 'bca', 'BcaB04g19944' => 'bca', 'BcaB05g21548' => 'bca', 'BcaB05g21549' => 'bca', 'BcaB05g23227' => 'bca', 'BcaB06g26256' => 'bca', 'BcaB06g26257' => 'bca', 'BcaB06g28379' => 'bca', 'BcaC02g11159' => 'bca', 'BcaC03g13258' => 'bca', 'BcaC03g13259' => 'bca', 'BcaC05g24456' => 'bca', 'BcaC05g24457' => 'bca', 'BcaC07g36922' => 'bca', 'BcaC07g36923' => 'bca', 'BcaC07g42050' => 'bca', 'BcaC07g42176' => 'bca', 'BcaC07g42195' => 'bca', 'BcaC07g42196' => 'bca', 'BcaNung06674' => 'bca', 'BolC2t06351H' => 'bol', 'BolC2t06352H' => 'bol', 'BolC3t12993H' => 'bol', 'BolC4t23525H' => 'bol', 'BolC4t27475H' => 'bol', 'BolC5t29025H' => 'bol', 'BolC5t29026H' => 'bol', 'BolC8t46898H' => 'bol', 'BolC8t46899H' => 'bol', 'BolC8t52630H' => 'bol', 'BolC8t52765H' => 'bol', 'BolC9t53824H' => 'bol', 'BraA03t09760Z' => 'bra', 'BraA03t10990Z' => 'bra', 'BraA05t20413Z' => 'bra', 'BraA08t35602Z' => 'bra', 'BraA09t36458Z' => 'bra', 'BraA09t42018Z' => 'bra', 'BraA09t42129Z' => 'bra', 'BraA10t42536Z' => 'bra', 'BraA10t42537Z' => 'bra', 'C01p10690' => 'bna', 'C02p03890' => 'bna', 'C02p03900' => 'bna', 'C03p04620' => 'bna', 'C04p19870' => 'bna', 'C04p59670' => 'bna', 'C05p02460' => 'bna', 'C05p02470' => 'bna', 'C08p00980' => 'bna', 'C08p00990' => 'bna', 'C08p51030' => 'bna', 'C08p52360' => 'bna', 'C09p09120' => 'bna', 'CAN.G19.15' => 'can', 'CAN.G251.10' => 'can', 'CAN.G251.9' => 'can', 'CAN.G398.24' => 'can', 'CAN.G410.32' => 'can', 'CAN.G881.2' => 'can', 'CANSAT01G3025' => 'cansat', 'CANSAT78G1211' => 'cansat', 'CANSAT78G1218' => 'cansat', 'CANSAT78G1521' => 'cansat', 'CANSAT78G1670' => 'cansat', 'CARHR003600' => 'chi', 'CARHR003610' => 'chi', 'CARHR006290' => 'chi', 'CARHR006430' => 'chi', 'CARHR124110' => 'chi', 'CARHR203870' => 'chi', 'CARHR203880' => 'chi', 'CARHR203890' => 'chi', 'CARHR276880' => 'chi', 'Carub.0001s0346' => 'cru', 'Carub.0001s0347' => 'cru', 'Carub.0001s0607' => 'cru', 'Carub.0003s2768' => 'cru', 'Carub.0003s2769' => 'cru', 'Carub.0004s1178' => 'cru', 'Carub.0006s0806' => 'cru', 'Carub.0006s0807' => 'cru', 'Carub.0006s0808' => 'cru', 'Carub.0008s0501' => 'cru', 'Carub.0008s2379' => 'cru', 'Ca_08655_v3' => 'car', 'Ca_08922_v3' => 'car', 'Ca_08923_v3' => 'car', 'Ca_09119_v3' => 'car', 'Ca_09703_v3' => 'car', 'Ca_09705_v3' => 'car', 'Ca_09835_v3' => 'car', 'Ca_26403_v3' => 'car', 'Ca_30719_v3' => 'car', 'CBR_g17958' => 'cbr', 'CBR_g40516' => 'cbr', 'Cc00_g05350' => 'ccan', 'Cc01_g18690' => 'ccan', 'Cc03_g04830' => 'ccan', 'Cc03_g04850' => 'ccan', 'CDE02G4469' => 'cde', 'CDE06G0883' => 'cde', 'CDE06G1295' => 'cde', 'CDE06G1390' => 'cde', 'CDE07G0584' => 'cde', 'CDE07G1084' => 'cde', 'CDE08G1259' => 'cde', 'Cfa002341' => 'cfa', 'Cfa024337' => 'cfa', 'Ciclev10004749m.g' => 'ccl', 'Ciclev10006127m.g' => 'ccl', 'Ciclev10019720m.g' => 'ccl', 'Ciclev10022652m.g' => 'ccl', 'CiPaw.01G190400' => 'cil', 'CiPaw.01G190500' => 'cil', 'CiPaw.02G116400' => 'cil', 'CiPaw.02G116500' => 'cil', 'CiPaw.04G183000' => 'cil', 'CiPaw.04G183300' => 'cil', 'ClCG05G004610' => 'cla', 'ClCG05G004620' => 'cla', 'ClCG06G006730' => 'cla', 'ClCG06G006740' => 'cla', 'ClCG11G003690' => 'cla', 'COL.COLO4_08276' => 'col', 'COL.COLO4_08277' => 'col', 'COL.COLO4_15787' => 'col', 'COL.COLO4_15789' => 'col', 'Cpa.g.c44815' => 'cpa', 'Cpa.g.sc52.144' => 'cpa', 'Cpa.g.sc58.46' => 'cpa', 'Cpa.g.sc58.47' => 'cpa', 'Cre08.g360900' => 'cre', 'CsaV3_2G013030' => 'csa', 'CsaV3_2G013050' => 'csa', 'CsaV3_2G015620' => 'csa', 'CsaV3_3G012590' => 'csa', 'CsaV3_3G012600' => 'csa', 'CSS0001641' => 'camsi', 'CSS0008310' => 'camsi', 'CSS0013011' => 'camsi', 'CSS0017147' => 'camsi', 'CSS0022970' => 'camsi', 'CSS0025655' => 'camsi', 'CSS0028665' => 'camsi', 'CSS0029117' => 'camsi', 'CSS0032024' => 'camsi', 'CSS0039681' => 'camsi', 'CSS0046516' => 'camsi', 'CSS0050307' => 'camsi', 'DCAR_005871' => 'dca', 'DCAR_007342' => 'dca', 'DCAR_024228' => 'dca', 'DCAR_027277' => 'dca', 'DCAR_030718' => 'dca', 'Dinv20287' => 'din', 'Dinv22461' => 'din', 'Dinv22464' => 'din', 'Dinv29912' => 'din', 'Dinv29913' => 'din', 'Dinv34580' => 'din', 'Dinv34582' => 'din', 'Dinv44632' => 'din', 'Duzib052G0266' => 'dzi', 'Duzib133G0907' => 'dzi', 'Duzib133G1034' => 'dzi', 'Duzib138G0207' => 'dzi', 'Duzib138G0491' => 'dzi', 'Duzib151G0812' => 'dzi', 'Duzib151G1166' => 'dzi', 'Duzib168G0192' => 'dzi', 'Duzib211G0077' => 'dzi', 'Duzib212G0429' => 'dzi', 'Duzib212G0472' => 'dzi', 'ECA233G2617' => 'eca', 'ECA236G4188' => 'eca', 'ECA240G0936' => 'eca', 'ECA240G1129' => 'eca', 'ECA247G0623' => 'eca', 'EL10Ac5g10451' => 'bvu', 'EL10Ac5g10453' => 'bvu', 'EL10Ac5g10894' => 'bvu', 'Eucgr.H00192' => 'egr', 'Eucgr.H00193' => 'egr', 'Eucgr.H00194' => 'egr', 'Eucgr.J01562' => 'egr', 'Eucgr.K03301' => 'egr', 'FAN02G0632' => 'fan', 'FAN05G5378' => 'fan', 'FAN09G3247' => 'fan', 'FAN12G0435' => 'fan', 'FAN12G2426' => 'fan', 'FAN14G1707' => 'fan', 'FAN14G4725' => 'fan', 'FAN15G2071' => 'fan', 'FAN17G3065' => 'fan', 'FAN19G1376' => 'fan', 'FAN20G0354' => 'fan', 'FAN20G2429' => 'fan', 'FAN20G2658' => 'fan', 'FAN24G2343' => 'fan', 'FAN27G2362' => 'fan', 'FAN28G1765' => 'fan', 'FvH4_1g16020' => 'fve', 'FvH4_2g04890' => 'fve', 'FvH4_2g22270' => 'fve', 'FvH4_4g02630' => 'fve', 'FvH4_4g02640' => 'fve', 'FvH4_6g02650' => 'fve', 'Glyma.02G140600' => 'gma', 'Glyma.03G159900' => 'gma', 'Glyma.05G234800' => 'gma', 'Glyma.07G269600' => 'gma', 'Glyma.08G042300' => 'gma', 'Glyma.10G033500' => 'gma', 'Glyma.10G185200' => 'gma', 'Glyma.17G004300' => 'gma', 'Glyma.19G161900' => 'gma', 'Glyma.20G205100' => 'gma', 'Glyma.20G205200' => 'gma', 'Gohir.A01G139101' => 'ghi', 'Gohir.A02G035600' => 'ghi', 'Gohir.A02G117901' => 'ghi', 'Gohir.A07G210100' => 'ghi', 'Gohir.A07G210200' => 'ghi', 'Gohir.A08G061100' => 'ghi', 'Gohir.A09G223000' => 'ghi', 'Gohir.A09G223100' => 'ghi', 'Gohir.A10G113900' => 'ghi', 'Gohir.A10G114000' => 'ghi', 'Gohir.D02G042300' => 'ghi', 'Gohir.D07G216100' => 'ghi', 'Gohir.D07G216200' => 'ghi', 'Gohir.D08G070400' => 'ghi', 'Gohir.D09G225000' => 'ghi', 'Gohir.D09G225100' => 'ghi', 'Gohir.D10G152300' => 'ghi', 'Gohir.D10G153200' => 'ghi', 'Gohir.D11G133701' => 'ghi', 'Gorai.004G074100' => 'gra', 'Gorai.005G046800' => 'gra', 'Gorai.006G246500' => 'gra', 'Gorai.006G246600' => 'gra', 'Gorai.007G142900' => 'gra', 'Gorai.011G171000' => 'gra', 'Gorai.011G171100' => 'gra', 'Gorai.013G104300' => 'gra', 'Gorai.013G104400' => 'gra', 'GSVIVG01000754001' => 'vvi', 'GSVIVG01000756001' => 'vvi', 'GSVIVG01010903001' => 'vvi', 'GSVIVG01017623001' => 'vvi', 'GSVIVG01018113001' => 'vvi', 'GSVIVG01018116001' => 'vvi', 'GSVIVG01018118001' => 'vvi', 'HanXRQChr03g0076211' => 'han', 'HanXRQChr03g0092431' => 'han', 'HanXRQChr03g0092441' => 'han', 'HanXRQChr03g0092591' => 'han', 'HanXRQChr03g0092671' => 'han', 'HanXRQChr03g0092681' => 'han', 'HanXRQChr03g0092691' => 'han', 'HanXRQChr03g0092701' => 'han', 'HanXRQChr03g0092721' => 'han', 'HanXRQChr03g0092731' => 'han', 'HanXRQChr04g0113681' => 'han', 'HanXRQChr10g0281371' => 'han', 'HanXRQChr11g0337141' => 'han', 'HanXRQChr13g0424521' => 'han', 'HanXRQChr13g0424531' => 'han', 'HanXRQChr13g0424541' => 'han', 'HanXRQChr16g0498221' => 'han', 'Haze_04377' => 'cav', 'Haze_11298' => 'cav', 'Haze_24547' => 'cav', 'Haze_24550' => 'cav', 'Haze_26587' => 'cav', 'Hma1.2p1_0650F.1_g195410' => 'hma', 'Hma1.2p1_0893F.1_g233470' => 'hma', 'HPP92_006508' => 'vpl', 'HPP92_024780' => 'vpl', 'Hund02688' => 'sun', 'Hund09380' => 'sun', 'Hund09381' => 'sun', 'Hund09832' => 'sun', 'Hund09833' => 'sun', 'Hund11351' => 'sun', 'Hund11513' => 'sun', 'Lalb_Chr06g0162591' => 'lal', 'Lalb_Chr06g0162601' => 'lal', 'Lalb_Chr06g0169321' => 'lal', 'Lalb_Chr09g0330951' => 'lal', 'Lalb_Chr16g0387631' => 'lal', 'Lalb_Chr21g0306241' => 'lal', 'Lalb_Chr25g0290051' => 'lal', 'Lalb_Chr25g0290061' => 'lal', 'Lalb_Chr25g0290071' => 'lal', 'Lj1g0003876' => 'lja', 'Lj1P1207T36' => 'lonja', 'Lj2C1156G12' => 'lonja', 'Lj3A793G39' => 'lonja', 'Lj3C580G2' => 'lonja', 'Lj3C780G2' => 'lonja', 'Lj3C780T4' => 'lonja', 'Lj3C793G9' => 'lonja', 'Lj4g0012960' => 'lja', 'Lj5g0021252' => 'lja', 'Lj5g0021484' => 'lja', 'Lj5g0024528' => 'lja', 'Lj6A399T12' => 'lonja', 'Lj6A656G65' => 'lonja', 'Lsat_1_v5_gn_3_125500' => 'lsa', 'Lsat_1_v5_gn_3_125540' => 'lsa', 'Lsat_1_v5_gn_5_72701' => 'lsa', 'Lsat_1_v5_gn_8_91560' => 'lsa', 'Lsat_1_v5_gn_9_9640' => 'lsa', 'Manes.01G200600' => 'mes', 'Manes.01G200700' => 'mes', 'Manes.03G168900' => 'mes', 'Manes.03G169000' => 'mes', 'Manes.05G085801' => 'mes', 'Manes.05G086200' => 'mes', 'Manes.15G036700' => 'mes', 'Manes.15G036900' => 'mes', 'Mapoly0004s0172' => 'mpo', 'Mapoly0023s0001' => 'mpo', 'Mapoly0142s0012' => 'mpo', 'MBI01_g32854_MAGBIO' => 'mbi', 'MBI11_g24427_MAGBIO' => 'mbi', 'MBI11_g47319_MAGBIO' => 'mbi', 'MCO01G433' => 'mco', 'MD00G1187800' => 'mdo', 'MD04G1226500' => 'mdo', 'MD05G1203900' => 'mdo', 'MD10G1191100' => 'mdo', 'MD12G1243500' => 'mdo', 'MD13G1207000' => 'mdo', 'MD13G1207100' => 'mdo', 'MD16G1208600' => 'mdo', 'Medtr1g050352' => 'mtr', 'Medtr1g070385' => 'mtr', 'Medtr1g070450' => 'mtr', 'Medtr1g075200' => 'mtr', 'Medtr1g075250' => 'mtr', 'Medtr1g075260' => 'mtr', 'Medtr1g475250' => 'mtr', 'Medtr4g075450' => 'mtr', 'Medtr7g096300' => 'mtr', 'Medtr8g105110' => 'mtr', 'MELO3C006470.2' => 'cme', 'MELO3C006471.2' => 'cme', 'MELO3C020772.2' => 'cme', 'MELO3C026780.2' => 'cme', 'MELO3C026781.2' => 'cme', 'Migut.D00390' => 'egut', 'Migut.G00435' => 'egut', 'Migut.G00436' => 'egut', 'Migut.G00718' => 'egut', 'MSTRG.21891' => 'ama', 'MSTRG.26910' => 'ama', 'MSTRG.4099' => 'ama', 'MSTRG.9925' => 'ama', 'Nitab4.5_0000165g0010' => 'nta', 'Nitab4.5_0000209g0180' => 'nta', 'Nitab4.5_0000244g0440' => 'nta', 'Nitab4.5_0000525g0220' => 'nta', 'Nitab4.5_0001597g0020' => 'nta', 'Nitab4.5_0001878g0040' => 'nta', 'Nitab4.5_0001878g0060' => 'nta', 'Nitab4.5_0002838g0100' => 'nta', 'Nitab4.5_0002838g0120' => 'nta', 'Nitab4.5_0004798g0030' => 'nta', 'Nitab4.5_0005420g0010' => 'nta', 'Nitab4.5_0005507g0010' => 'nta', 'Nitab4.5_0005574g0020' => 'nta', 'Nitab4.5_0005838g0010' => 'nta', 'Nitab4.5_0010580g0020' => 'nta', 'Nn1g02599' => 'nnu', 'Nn1g02608' => 'nnu', 'Nn3g17742' => 'nnu', 'Nn3g19534' => 'nnu', 'Nn3g19535' => 'nnu', 'Oeu008790.1' => 'oeu', 'Oeu008792.1' => 'oeu', 'Oeu032590.1' => 'oeu', 'Oeu035349.1' => 'oeu', 'Oeu049791.1' => 'oeu', 'Os01g0774500' => 'osa', 'Os03g0628800' => 'osa', 'Os03g0798600' => 'osa', 'Os05g0508800' => 'osa', 'Peaxi162Scf00036g02018' => 'pax', 'Peaxi162Scf00578g00032' => 'pax', 'Peaxi162Scf00578g00317' => 'pax', 'Peaxi162Scf00785g00114' => 'pax', 'Peaxi162Scf00813g00119' => 'pax', 'Peaxi162Scf00906g00227' => 'pax', 'PGR004G0875' => 'pgr', 'PGR004G2424' => 'pgr', 'PGR031G1239' => 'pgr', 'PGR031G2474' => 'pgr', 'PGR044G0423' => 'pgr', 'PGSC0003DMG400001128' => 'stu', 'PGSC0003DMG400007336' => 'stu', 'PGSC0003DMG400016318' => 'stu', 'PGSC0003DMG400016319' => 'stu', 'PGSC0003DMG400018074' => 'stu', 'Phvul.001G157700' => 'pvu', 'Phvul.002G148550' => 'pvu', 'Phvul.002G320200' => 'pvu', 'Phvul.003G089200' => 'pvu', 'Phvul.007G126000' => 'pvu', 'Phvul.007G126100' => 'pvu', 'Phvul.007G178000' => 'pvu', 'Phvul.007G178200' => 'pvu', 'Potri.002G043000' => 'ptr', 'Potri.002G043200' => 'ptr', 'Potri.003G123750' => 'ptr', 'Potri.005G055401' => 'ptr', 'Potri.005G219700' => 'ptr', 'Potri.005G220000' => 'ptr', 'Potri.008G161901' => 'ptr', 'Potri.008G162000' => 'ptr', 'Potri.008G162400' => 'ptr', 'Potri.010G076900' => 'ptr', 'Pp3c12_9180' => 'ppa', 'Pp3c13_19770' => 'ppa', 'Pp3c14_22950' => 'ppa', 'Pp3c16_12160' => 'ppa', 'Pp3c27_7820' => 'ppa', 'Pp3c2_3490' => 'ppa', 'Pp3c3_23700' => 'ppa', 'Pp3c3_36520' => 'ppa', 'Pp3c4_15250' => 'ppa', 'PRCOL_00007002' => 'pco', 'Prupe.1G030600' => 'ppe', 'Prupe.1G030700' => 'ppe', 'Prupe.6G345200' => 'ppe', 'Prupe.8G230300' => 'ppe', 'Prupe.8G230500' => 'ppe', 'Psat3g059600' => 'psa', 'Psat5g200920' => 'psa', 'Psat6g056440' => 'psa', 'Psat6g057360' => 'psa', 'Psat6g134120' => 'psa', 'Psat6g134160' => 'psa', 'Psat7g008640' => 'psa', 'Psat7g185240' => 'psa', 'PSO017G1330' => 'pso', 'PSO063G6097' => 'pso', 'PSO170G0835' => 'pso', 'PSO170G2499' => 'pso', 'PSO210G5058' => 'pso', 'PSO210G6154' => 'pso', 'PSO585G0031' => 'pso', 'PSO832G0264' => 'pso', 'PSO832G4288' => 'pso', 'QL03p027355' => 'qlo', 'QL03p027430' => 'qlo', 'QL04p081380' => 'qlo', 'QL06p015642' => 'qlo', 'QL06p015650' => 'qlo', 'QL06p015686' => 'qlo', 'QL12p042927' => 'qlo', 'QL93p1863_0035' => 'qlo', 'RcHm_v2.0_Chr3g0450581' => 'rch', 'RcHm_v2.0_Chr4g0390371' => 'rch', 'RcHm_v2.0_Chr4g0390381' => 'rch', 'RcHm_v2.0_Chr4g0390491' => 'rch', 'RcHm_v2.0_Chr4g0390501' => 'rch', 'RcHm_v2.0_Chr6g0289231' => 'rch', 'Rhsim04G0190400' => 'rsi', 'Rhsim04G0190500' => 'rsi', 'Rhsim04G0190600' => 'rsi', 'Rhsim13G0031400' => 'rsi', 'Rhsim13G0165600' => 'rsi', 'RhsimUnG0114600' => 'rsi', 'RhsimUnG0114700' => 'rsi', 'Sabra02G0034800' => 'sbr', 'Sabra02G0035100' => 'sbr', 'Sabra05G0168600' => 'sbr', 'Sabra05G0168800' => 'sbr', 'Sabra08G0123700' => 'sbr', 'Sabra10G0031900' => 'sbr', 'Sabra13G0039000' => 'sbr', 'SalBow2G0782' => 'sbo', 'SalBow2G1403' => 'sbo', 'SalBow4G0074' => 'sbo', 'SalBow4G2635' => 'sbo', 'SalBow5G3010' => 'sbo', 'Sc05g0000870' => 'sci', 'Sc05g0000890' => 'sci', 'Sc13g0005000' => 'sci', 'Sc13g0005030' => 'sci', 'Sc19g0003790' => 'sci', 'Sc19g0003800' => 'sci', 'Sed0003467' => 'sed', 'Sed0009355' => 'sed', 'Sed0009894' => 'sed', 'Sed0011972' => 'sed', 'Sed0021483' => 'sed', 'Sed0021750' => 'sed', 'Sed0026279' => 'sed', 'SEGI_05312' => 'sgi', 'SEGI_10112' => 'sgi', 'SEGI_15835' => 'sgi', 'SEGI_30386' => 'sgi', 'SEGI_34122' => 'sgi', 'SEGI_35063' => 'sgi', 'SGA_v2.0_scaffold101G29794' => 'sas', 'SGA_v2.0_scaffold1G00573' => 'sas', 'SGA_v2.0_scaffold79G25637' => 'sas', 'SGA_v2.0_scaffold88G27283' => 'sas', 'SGA_v2.0_scaffold88G27285' => 'sas', 'SGA_v2.0_scaffold88G27331' => 'sas', 'SHI09937' => 'shi', 'SMO119G0302' => 'smo', 'SMO137G0231' => 'smo', 'SMO367G1151' => 'smo', 'Solyc02g082000.3' => 'sly', 'Solyc06g031670.3' => 'sly', 'Solyc06g053810.3' => 'sly', 'Solyc07g025457.1' => 'sly', 'Solyc08g059740.1' => 'sly', 'Solyc08g059750.3' => 'sly', 'Solyc09g083370.3' => 'sly', 'Solyc12g038950.3' => 'sly', 'Sopen02g026630' => 'spe', 'Sopen06g018930' => 'spe', 'Sopen06g018940' => 'spe', 'Sopen08g009460' => 'spe', 'Sopen09g032290' => 'spe', 'Sp1g03080' => 'spa', 'Sp1g03090' => 'spa', 'Sp1g05480' => 'spa', 'Sp2g07860' => 'spa', 'Sp2g08430' => 'spa', 'Sp2g08440' => 'spa', 'Sp2g26200' => 'spa', 'Sp4g13170' => 'spa', 'Sp6g33840' => 'spa', 'SpUn1204_0010' => 'spa', 'TAR365G0908' => 'tar', 'TAR381G1270' => 'tar', 'TAR381G1651' => 'tar', 'TAR625G1131' => 'tar', 'TAR633G0962' => 'tar', 'TAR633G1729' => 'tar', 'TAR633G1864' => 'tar', 'TAR636G0221' => 'tar', 'TAR636G0314' => 'tar', 'TAR636G3202' => 'tar', 'THA.LOC104800805' => 'tha', 'THA.LOC104801096' => 'tha', 'THA.LOC104801555' => 'tha', 'THA.LOC104808491' => 'tha', 'THA.LOC104808595' => 'tha', 'THA.LOC104815985' => 'tha', 'THA.LOC104822250' => 'tha', 'THA.LOC104826071' => 'tha', 'Thecc.01G265200' => 'tca', 'Thecc.01G265300' => 'tca', 'Thecc.01G265700' => 'tca', 'Thecc.03G109100' => 'tca', 'Thecc.04G245900' => 'tca', 'Thecc.04G246000' => 'tca', 'Thhalv10003334m.g' => 'esa', 'Thhalv10005508m.g' => 'esa', 'Thhalv10005643m.g' => 'esa', 'Thhalv10007316m.g' => 'esa', 'Thhalv10009006m.g' => 'esa', 'Thhalv10009309m.g' => 'esa', 'Thhalv10014917m.g' => 'esa', 'Thhalv10014919m.g' => 'esa', 'Thhalv10015393m.g' => 'esa', 'Thhalv10016515m.g' => 'esa', 'Thhalv10029242m.g' => 'esa', 'TPR.G16654' => 'tpr', 'TPR.G20589' => 'tpr', 'TPR.G23029' => 'tpr', 'TPR.G27731' => 'tpr', 'TPR.G28889' => 'tpr', 'TPR.G28899' => 'tpr', 'TPR.G30846' => 'tpr', 'TPR.G5452' => 'tpr', 'TPR.G5713' => 'tpr', 'TPR.G9046' => 'tpr', 'TPR.G9061' => 'tpr', 'TWI09G1075' => 'twi', 'TWI12G0806' => 'twi', 'TWI18G0108' => 'twi', 'TWI53G1361' => 'twi', 'TWI73G0185' => 'twi', 'TWI73G0427' => 'twi', 'unitig_37.g12001' => 'ugi', 'unitig_747.g21660' => 'ugi', 'unitig_748.g7232' => 'ugi', 'unitig_748.g7315' => 'ugi', 'unitig_85.g27262' => 'ugi', 'unitig_92.g28220' => 'ugi', 'vmacro02632' => 'vma', 'vmacro08410' => 'vma', 'vmacro08411' => 'vma', 'vmacro15407' => 'vma', 'VMungo0251G3619' => 'vmu', 'VMungo0720G1204' => 'vmu', 'VMungo0720G1918' => 'vmu', 'VMungo0720G2387' => 'vmu', 'VMungo0720G2961' => 'vmu', 'VMungo1215G2154' => 'vmu', 'VMungo1383G2411' => 'vmu', 'Zm00001eb051130' => 'zma', 'Zm00001eb116830' => 'zma', 'Zm00001eb116850' => 'zma', 'Zm00001eb151740' => 'zma', 'Zm00001eb292360' => 'zma', 'Zm00001eb301640' => 'zma' ) $gf_id = 'HOM05D000856' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000856' ) $data_identifier = 'HOM05D000856' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 13, 'ath' => (int) 10, 'atr' => (int) 1, 'acertr' => (int) 8, 'cqu' => (int) 6, 'bca' => (int) 21, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 11, 'car' => (int) 9, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 8, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 5, 'fan' => (int) 16, 'fve' => (int) 6, 'gma' => (int) 11, 'ghi' => (int) 19, 'gra' => (int) 9, 'vvi' => (int) 7, 'han' => (int) 17, 'cav' => (int) 5, 'hma' => (int) 2, 'vpl' => (int) 2, 'sun' => (int) 7, 'lal' => (int) 9, 'lja' => (int) 5, 'lonja' => (int) 9, 'lsa' => (int) 5, 'mes' => (int) 8, 'mpo' => (int) 3, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 10, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 15, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 9, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 9, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 6, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 5, 'spa' => (int) 10, 'tar' => (int) 10, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 11, 'tpr' => (int) 11, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 4, 'vmu' => (int) 7, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb301640' $species_info = array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ) $local_species = 'gra' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000856', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p00010' => 'bna', 'A03p04160' => 'bna', 'A03p17160' => 'bna', 'A04p23370' => 'bna', 'A05p14860' => 'bna', 'A08p37020' => 'bna', 'A09p08050' => 'bna', 'A09p66800' => 'bna', 'A09p67940' => 'bna', 'A10p02680' => 'bna', 'A10p05320' => 'bna', 'Aa31LG1G20560' => 'aar', 'Aa31LG1G20610' => 'aar', 'Aa31LG1G7810' => 'aar', 'Aa31LG5G3590' => 'aar', 'Aa31LG5G6140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3819' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4683' => 'aag', 'Actinidia04480' => 'ach', 'Actinidia05466' => 'ach', 'Actinidia08445' => 'ach', 'Actinidia21170' => 'ach', 'Actinidia24812' => 'ach', 'Actinidia24951' => 'ach', 'Actinidia40088' => 'ach', 'Ah.02g111660' => 'amhyb', 'Ah.11g048900' => 'amhyb', 'Ah.11g049910' => 'amhyb', 'AL1G13870' => 'aly', 'AL1G13880' => 'aly', 'AL1G16760' => 'aly', 'AL390U10020' => 'aly', 'AL4G25520' => 'aly', 'AL6G19890' => 'aly', 'AL6G19900' => 'aly', 'AL6G19910' => 'aly', 'AL8G40100' => 'aly', 'Aqoxy2G03562' => 'aox', 'Aqoxy5G00316' => 'aox', 'Aqoxy5G00926' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1628KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1H403S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2FU6SJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.882I6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8YRY2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YN1SN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AF70II' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZA8L1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F916KL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHRD8H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KTZ8QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S22EMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8M29T' => 'arhy', 'AT1G04270' => 'ath', 'AT1G04280' => 'ath', 'AT1G06750' => 'ath', 'AT1G33850' => 'ath', 'AT2G30630' => 'ath', 'AT5G09490' => 'ath', 'AT5G09500' => 'ath', 'AT5G09510' => 'ath', 'AT5G43640' => 'ath', 'AT5G63070' => 'ath', 'ATR0605G315' => 'atr', 'Atru.chr11.175' => 'acertr', 'Atru.chr11.653' => 'acertr', 'Atru.chr3.1616' => 'acertr', 'Atru.chr4.2230' => 'acertr', 'Atru.chr4.2232' => 'acertr', 'Atru.chr5.1598' => 'acertr', 'Atru.chr5.1600' => 'acertr', 'Atru.chr5.2188' => 'acertr', 'AUR62008326' => 'cqu', 'AUR62011922' => 'cqu', 'AUR62011924' => 'cqu', 'AUR62021771' => 'cqu', 'AUR62032237' => 'cqu', 'AUR62032240' => 'cqu', 'BcaB01g05572' => 'bca', 'BcaB02g10337' => 'bca', 'BcaB04g19944' => 'bca', 'BcaB05g21548' => 'bca', 'BcaB05g21549' => 'bca', 'BcaB05g23227' => 'bca', 'BcaB06g26256' => 'bca', 'BcaB06g26257' => 'bca', 'BcaB06g28379' => 'bca', 'BcaC02g11159' => 'bca', 'BcaC03g13258' => 'bca', 'BcaC03g13259' => 'bca', 'BcaC05g24456' => 'bca', 'BcaC05g24457' => 'bca', 'BcaC07g36922' => 'bca', 'BcaC07g36923' => 'bca', 'BcaC07g42050' => 'bca', 'BcaC07g42176' => 'bca', 'BcaC07g42195' => 'bca', 'BcaC07g42196' => 'bca', 'BcaNung06674' => 'bca', 'BolC2t06351H' => 'bol', 'BolC2t06352H' => 'bol', 'BolC3t12993H' => 'bol', 'BolC4t23525H' => 'bol', 'BolC4t27475H' => 'bol', 'BolC5t29025H' => 'bol', 'BolC5t29026H' => 'bol', 'BolC8t46898H' => 'bol', 'BolC8t46899H' => 'bol', 'BolC8t52630H' => 'bol', 'BolC8t52765H' => 'bol', 'BolC9t53824H' => 'bol', 'BraA03t09760Z' => 'bra', 'BraA03t10990Z' => 'bra', 'BraA05t20413Z' => 'bra', 'BraA08t35602Z' => 'bra', 'BraA09t36458Z' => 'bra', 'BraA09t42018Z' => 'bra', 'BraA09t42129Z' => 'bra', 'BraA10t42536Z' => 'bra', 'BraA10t42537Z' => 'bra', 'C01p10690' => 'bna', 'C02p03890' => 'bna', 'C02p03900' => 'bna', 'C03p04620' => 'bna', 'C04p19870' => 'bna', 'C04p59670' => 'bna', 'C05p02460' => 'bna', 'C05p02470' => 'bna', 'C08p00980' => 'bna', 'C08p00990' => 'bna', 'C08p51030' => 'bna', 'C08p52360' => 'bna', 'C09p09120' => 'bna', 'CAN.G19.15' => 'can', 'CAN.G251.10' => 'can', 'CAN.G251.9' => 'can', 'CAN.G398.24' => 'can', 'CAN.G410.32' => 'can', 'CAN.G881.2' => 'can', 'CANSAT01G3025' => 'cansat', 'CANSAT78G1211' => 'cansat', 'CANSAT78G1218' => 'cansat', 'CANSAT78G1521' => 'cansat', 'CANSAT78G1670' => 'cansat', 'CARHR003600' => 'chi', 'CARHR003610' => 'chi', 'CARHR006290' => 'chi', 'CARHR006430' => 'chi', 'CARHR124110' => 'chi', 'CARHR203870' => 'chi', 'CARHR203880' => 'chi', 'CARHR203890' => 'chi', 'CARHR276880' => 'chi', 'Carub.0001s0346' => 'cru', 'Carub.0001s0347' => 'cru', 'Carub.0001s0607' => 'cru', 'Carub.0003s2768' => 'cru', 'Carub.0003s2769' => 'cru', 'Carub.0004s1178' => 'cru', 'Carub.0006s0806' => 'cru', 'Carub.0006s0807' => 'cru', 'Carub.0006s0808' => 'cru', 'Carub.0008s0501' => 'cru', 'Carub.0008s2379' => 'cru', 'Ca_08655_v3' => 'car', 'Ca_08922_v3' => 'car', 'Ca_08923_v3' => 'car', 'Ca_09119_v3' => 'car', 'Ca_09703_v3' => 'car', 'Ca_09705_v3' => 'car', 'Ca_09835_v3' => 'car', 'Ca_26403_v3' => 'car', 'Ca_30719_v3' => 'car', 'CBR_g17958' => 'cbr', 'CBR_g40516' => 'cbr', 'Cc00_g05350' => 'ccan', 'Cc01_g18690' => 'ccan', 'Cc03_g04830' => 'ccan', 'Cc03_g04850' => 'ccan', 'CDE02G4469' => 'cde', 'CDE06G0883' => 'cde', 'CDE06G1295' => 'cde', 'CDE06G1390' => 'cde', 'CDE07G0584' => 'cde', 'CDE07G1084' => 'cde', 'CDE08G1259' => 'cde', 'Cfa002341' => 'cfa', 'Cfa024337' => 'cfa', 'Ciclev10004749m.g' => 'ccl', 'Ciclev10006127m.g' => 'ccl', 'Ciclev10019720m.g' => 'ccl', 'Ciclev10022652m.g' => 'ccl', 'CiPaw.01G190400' => 'cil', 'CiPaw.01G190500' => 'cil', 'CiPaw.02G116400' => 'cil', 'CiPaw.02G116500' => 'cil', 'CiPaw.04G183000' => 'cil', 'CiPaw.04G183300' => 'cil', 'ClCG05G004610' => 'cla', 'ClCG05G004620' => 'cla', 'ClCG06G006730' => 'cla', 'ClCG06G006740' => 'cla', 'ClCG11G003690' => 'cla', 'COL.COLO4_08276' => 'col', 'COL.COLO4_08277' => 'col', 'COL.COLO4_15787' => 'col', 'COL.COLO4_15789' => 'col', 'Cpa.g.c44815' => 'cpa', 'Cpa.g.sc52.144' => 'cpa', 'Cpa.g.sc58.46' => 'cpa', 'Cpa.g.sc58.47' => 'cpa', 'Cre08.g360900' => 'cre', 'CsaV3_2G013030' => 'csa', 'CsaV3_2G013050' => 'csa', 'CsaV3_2G015620' => 'csa', 'CsaV3_3G012590' => 'csa', 'CsaV3_3G012600' => 'csa', 'CSS0001641' => 'camsi', 'CSS0008310' => 'camsi', 'CSS0013011' => 'camsi', 'CSS0017147' => 'camsi', 'CSS0022970' => 'camsi', 'CSS0025655' => 'camsi', 'CSS0028665' => 'camsi', 'CSS0029117' => 'camsi', 'CSS0032024' => 'camsi', 'CSS0039681' => 'camsi', 'CSS0046516' => 'camsi', 'CSS0050307' => 'camsi', 'DCAR_005871' => 'dca', 'DCAR_007342' => 'dca', 'DCAR_024228' => 'dca', 'DCAR_027277' => 'dca', 'DCAR_030718' => 'dca', 'Dinv20287' => 'din', 'Dinv22461' => 'din', 'Dinv22464' => 'din', 'Dinv29912' => 'din', 'Dinv29913' => 'din', 'Dinv34580' => 'din', 'Dinv34582' => 'din', 'Dinv44632' => 'din', 'Duzib052G0266' => 'dzi', 'Duzib133G0907' => 'dzi', 'Duzib133G1034' => 'dzi', 'Duzib138G0207' => 'dzi', 'Duzib138G0491' => 'dzi', 'Duzib151G0812' => 'dzi', 'Duzib151G1166' => 'dzi', 'Duzib168G0192' => 'dzi', 'Duzib211G0077' => 'dzi', 'Duzib212G0429' => 'dzi', 'Duzib212G0472' => 'dzi', 'ECA233G2617' => 'eca', 'ECA236G4188' => 'eca', 'ECA240G0936' => 'eca', 'ECA240G1129' => 'eca', 'ECA247G0623' => 'eca', 'EL10Ac5g10451' => 'bvu', 'EL10Ac5g10453' => 'bvu', 'EL10Ac5g10894' => 'bvu', 'Eucgr.H00192' => 'egr', 'Eucgr.H00193' => 'egr', 'Eucgr.H00194' => 'egr', 'Eucgr.J01562' => 'egr', 'Eucgr.K03301' => 'egr', 'FAN02G0632' => 'fan', 'FAN05G5378' => 'fan', 'FAN09G3247' => 'fan', 'FAN12G0435' => 'fan', 'FAN12G2426' => 'fan', 'FAN14G1707' => 'fan', 'FAN14G4725' => 'fan', 'FAN15G2071' => 'fan', 'FAN17G3065' => 'fan', 'FAN19G1376' => 'fan', 'FAN20G0354' => 'fan', 'FAN20G2429' => 'fan', 'FAN20G2658' => 'fan', 'FAN24G2343' => 'fan', 'FAN27G2362' => 'fan', 'FAN28G1765' => 'fan', 'FvH4_1g16020' => 'fve', 'FvH4_2g04890' => 'fve', 'FvH4_2g22270' => 'fve', 'FvH4_4g02630' => 'fve', 'FvH4_4g02640' => 'fve', 'FvH4_6g02650' => 'fve', 'Glyma.02G140600' => 'gma', 'Glyma.03G159900' => 'gma', 'Glyma.05G234800' => 'gma', 'Glyma.07G269600' => 'gma', 'Glyma.08G042300' => 'gma', 'Glyma.10G033500' => 'gma', 'Glyma.10G185200' => 'gma', 'Glyma.17G004300' => 'gma', 'Glyma.19G161900' => 'gma', 'Glyma.20G205100' => 'gma', 'Glyma.20G205200' => 'gma', 'Gohir.A01G139101' => 'ghi', 'Gohir.A02G035600' => 'ghi', 'Gohir.A02G117901' => 'ghi', 'Gohir.A07G210100' => 'ghi', 'Gohir.A07G210200' => 'ghi', 'Gohir.A08G061100' => 'ghi', 'Gohir.A09G223000' => 'ghi', 'Gohir.A09G223100' => 'ghi', 'Gohir.A10G113900' => 'ghi', 'Gohir.A10G114000' => 'ghi', 'Gohir.D02G042300' => 'ghi', 'Gohir.D07G216100' => 'ghi', 'Gohir.D07G216200' => 'ghi', 'Gohir.D08G070400' => 'ghi', 'Gohir.D09G225000' => 'ghi', 'Gohir.D09G225100' => 'ghi', 'Gohir.D10G152300' => 'ghi', 'Gohir.D10G153200' => 'ghi', 'Gohir.D11G133701' => 'ghi', 'Gorai.004G074100' => 'gra', 'Gorai.005G046800' => 'gra', 'Gorai.006G246500' => 'gra', 'Gorai.006G246600' => 'gra', 'Gorai.007G142900' => 'gra', 'Gorai.011G171000' => 'gra', 'Gorai.011G171100' => 'gra', 'Gorai.013G104300' => 'gra', 'Gorai.013G104400' => 'gra', 'GSVIVG01000754001' => 'vvi', 'GSVIVG01000756001' => 'vvi', 'GSVIVG01010903001' => 'vvi', 'GSVIVG01017623001' => 'vvi', 'GSVIVG01018113001' => 'vvi', 'GSVIVG01018116001' => 'vvi', 'GSVIVG01018118001' => 'vvi', 'HanXRQChr03g0076211' => 'han', 'HanXRQChr03g0092431' => 'han', 'HanXRQChr03g0092441' => 'han', 'HanXRQChr03g0092591' => 'han', 'HanXRQChr03g0092671' => 'han', 'HanXRQChr03g0092681' => 'han', 'HanXRQChr03g0092691' => 'han', 'HanXRQChr03g0092701' => 'han', 'HanXRQChr03g0092721' => 'han', 'HanXRQChr03g0092731' => 'han', 'HanXRQChr04g0113681' => 'han', 'HanXRQChr10g0281371' => 'han', 'HanXRQChr11g0337141' => 'han', 'HanXRQChr13g0424521' => 'han', 'HanXRQChr13g0424531' => 'han', 'HanXRQChr13g0424541' => 'han', 'HanXRQChr16g0498221' => 'han', 'Haze_04377' => 'cav', 'Haze_11298' => 'cav', 'Haze_24547' => 'cav', 'Haze_24550' => 'cav', 'Haze_26587' => 'cav', 'Hma1.2p1_0650F.1_g195410' => 'hma', 'Hma1.2p1_0893F.1_g233470' => 'hma', 'HPP92_006508' => 'vpl', 'HPP92_024780' => 'vpl', 'Hund02688' => 'sun', 'Hund09380' => 'sun', 'Hund09381' => 'sun', 'Hund09832' => 'sun', 'Hund09833' => 'sun', 'Hund11351' => 'sun', 'Hund11513' => 'sun', 'Lalb_Chr06g0162591' => 'lal', 'Lalb_Chr06g0162601' => 'lal', 'Lalb_Chr06g0169321' => 'lal', 'Lalb_Chr09g0330951' => 'lal', 'Lalb_Chr16g0387631' => 'lal', 'Lalb_Chr21g0306241' => 'lal', 'Lalb_Chr25g0290051' => 'lal', 'Lalb_Chr25g0290061' => 'lal', 'Lalb_Chr25g0290071' => 'lal', 'Lj1g0003876' => 'lja', 'Lj1P1207T36' => 'lonja', 'Lj2C1156G12' => 'lonja', 'Lj3A793G39' => 'lonja', 'Lj3C580G2' => 'lonja', 'Lj3C780G2' => 'lonja', 'Lj3C780T4' => 'lonja', 'Lj3C793G9' => 'lonja', 'Lj4g0012960' => 'lja', 'Lj5g0021252' => 'lja', 'Lj5g0021484' => 'lja', 'Lj5g0024528' => 'lja', 'Lj6A399T12' => 'lonja', 'Lj6A656G65' => 'lonja', 'Lsat_1_v5_gn_3_125500' => 'lsa', 'Lsat_1_v5_gn_3_125540' => 'lsa', 'Lsat_1_v5_gn_5_72701' => 'lsa', 'Lsat_1_v5_gn_8_91560' => 'lsa', 'Lsat_1_v5_gn_9_9640' => 'lsa', 'Manes.01G200600' => 'mes', 'Manes.01G200700' => 'mes', 'Manes.03G168900' => 'mes', 'Manes.03G169000' => 'mes', 'Manes.05G085801' => 'mes', 'Manes.05G086200' => 'mes', 'Manes.15G036700' => 'mes', 'Manes.15G036900' => 'mes', 'Mapoly0004s0172' => 'mpo', 'Mapoly0023s0001' => 'mpo', 'Mapoly0142s0012' => 'mpo', 'MBI01_g32854_MAGBIO' => 'mbi', 'MBI11_g24427_MAGBIO' => 'mbi', 'MBI11_g47319_MAGBIO' => 'mbi', 'MCO01G433' => 'mco', 'MD00G1187800' => 'mdo', 'MD04G1226500' => 'mdo', 'MD05G1203900' => 'mdo', 'MD10G1191100' => 'mdo', 'MD12G1243500' => 'mdo', 'MD13G1207000' => 'mdo', 'MD13G1207100' => 'mdo', 'MD16G1208600' => 'mdo', 'Medtr1g050352' => 'mtr', 'Medtr1g070385' => 'mtr', 'Medtr1g070450' => 'mtr', 'Medtr1g075200' => 'mtr', 'Medtr1g075250' => 'mtr', 'Medtr1g075260' => 'mtr', 'Medtr1g475250' => 'mtr', 'Medtr4g075450' => 'mtr', 'Medtr7g096300' => 'mtr', 'Medtr8g105110' => 'mtr', 'MELO3C006470.2' => 'cme', 'MELO3C006471.2' => 'cme', 'MELO3C020772.2' => 'cme', 'MELO3C026780.2' => 'cme', 'MELO3C026781.2' => 'cme', 'Migut.D00390' => 'egut', 'Migut.G00435' => 'egut', 'Migut.G00436' => 'egut', 'Migut.G00718' => 'egut', 'MSTRG.21891' => 'ama', 'MSTRG.26910' => 'ama', 'MSTRG.4099' => 'ama', 'MSTRG.9925' => 'ama', 'Nitab4.5_0000165g0010' => 'nta', 'Nitab4.5_0000209g0180' => 'nta', 'Nitab4.5_0000244g0440' => 'nta', 'Nitab4.5_0000525g0220' => 'nta', 'Nitab4.5_0001597g0020' => 'nta', 'Nitab4.5_0001878g0040' => 'nta', 'Nitab4.5_0001878g0060' => 'nta', 'Nitab4.5_0002838g0100' => 'nta', 'Nitab4.5_0002838g0120' => 'nta', 'Nitab4.5_0004798g0030' => 'nta', 'Nitab4.5_0005420g0010' => 'nta', 'Nitab4.5_0005507g0010' => 'nta', 'Nitab4.5_0005574g0020' => 'nta', 'Nitab4.5_0005838g0010' => 'nta', 'Nitab4.5_0010580g0020' => 'nta', 'Nn1g02599' => 'nnu', 'Nn1g02608' => 'nnu', 'Nn3g17742' => 'nnu', 'Nn3g19534' => 'nnu', 'Nn3g19535' => 'nnu', 'Oeu008790.1' => 'oeu', 'Oeu008792.1' => 'oeu', 'Oeu032590.1' => 'oeu', 'Oeu035349.1' => 'oeu', 'Oeu049791.1' => 'oeu', 'Os01g0774500' => 'osa', 'Os03g0628800' => 'osa', 'Os03g0798600' => 'osa', 'Os05g0508800' => 'osa', 'Peaxi162Scf00036g02018' => 'pax', 'Peaxi162Scf00578g00032' => 'pax', 'Peaxi162Scf00578g00317' => 'pax', 'Peaxi162Scf00785g00114' => 'pax', 'Peaxi162Scf00813g00119' => 'pax', 'Peaxi162Scf00906g00227' => 'pax', 'PGR004G0875' => 'pgr', 'PGR004G2424' => 'pgr', 'PGR031G1239' => 'pgr', 'PGR031G2474' => 'pgr', 'PGR044G0423' => 'pgr', 'PGSC0003DMG400001128' => 'stu', 'PGSC0003DMG400007336' => 'stu', 'PGSC0003DMG400016318' => 'stu', 'PGSC0003DMG400016319' => 'stu', 'PGSC0003DMG400018074' => 'stu', 'Phvul.001G157700' => 'pvu', 'Phvul.002G148550' => 'pvu', 'Phvul.002G320200' => 'pvu', 'Phvul.003G089200' => 'pvu', 'Phvul.007G126000' => 'pvu', 'Phvul.007G126100' => 'pvu', 'Phvul.007G178000' => 'pvu', 'Phvul.007G178200' => 'pvu', 'Potri.002G043000' => 'ptr', 'Potri.002G043200' => 'ptr', 'Potri.003G123750' => 'ptr', 'Potri.005G055401' => 'ptr', 'Potri.005G219700' => 'ptr', 'Potri.005G220000' => 'ptr', 'Potri.008G161901' => 'ptr', 'Potri.008G162000' => 'ptr', 'Potri.008G162400' => 'ptr', 'Potri.010G076900' => 'ptr', 'Pp3c12_9180' => 'ppa', 'Pp3c13_19770' => 'ppa', 'Pp3c14_22950' => 'ppa', 'Pp3c16_12160' => 'ppa', 'Pp3c27_7820' => 'ppa', 'Pp3c2_3490' => 'ppa', 'Pp3c3_23700' => 'ppa', 'Pp3c3_36520' => 'ppa', 'Pp3c4_15250' => 'ppa', 'PRCOL_00007002' => 'pco', 'Prupe.1G030600' => 'ppe', 'Prupe.1G030700' => 'ppe', 'Prupe.6G345200' => 'ppe', 'Prupe.8G230300' => 'ppe', 'Prupe.8G230500' => 'ppe', 'Psat3g059600' => 'psa', 'Psat5g200920' => 'psa', 'Psat6g056440' => 'psa', 'Psat6g057360' => 'psa', 'Psat6g134120' => 'psa', 'Psat6g134160' => 'psa', 'Psat7g008640' => 'psa', 'Psat7g185240' => 'psa', 'PSO017G1330' => 'pso', 'PSO063G6097' => 'pso', 'PSO170G0835' => 'pso', 'PSO170G2499' => 'pso', 'PSO210G5058' => 'pso', 'PSO210G6154' => 'pso', 'PSO585G0031' => 'pso', 'PSO832G0264' => 'pso', 'PSO832G4288' => 'pso', 'QL03p027355' => 'qlo', 'QL03p027430' => 'qlo', 'QL04p081380' => 'qlo', 'QL06p015642' => 'qlo', 'QL06p015650' => 'qlo', 'QL06p015686' => 'qlo', 'QL12p042927' => 'qlo', 'QL93p1863_0035' => 'qlo', 'RcHm_v2.0_Chr3g0450581' => 'rch', 'RcHm_v2.0_Chr4g0390371' => 'rch', 'RcHm_v2.0_Chr4g0390381' => 'rch', 'RcHm_v2.0_Chr4g0390491' => 'rch', 'RcHm_v2.0_Chr4g0390501' => 'rch', 'RcHm_v2.0_Chr6g0289231' => 'rch', 'Rhsim04G0190400' => 'rsi', 'Rhsim04G0190500' => 'rsi', 'Rhsim04G0190600' => 'rsi', 'Rhsim13G0031400' => 'rsi', 'Rhsim13G0165600' => 'rsi', 'RhsimUnG0114600' => 'rsi', 'RhsimUnG0114700' => 'rsi', 'Sabra02G0034800' => 'sbr', 'Sabra02G0035100' => 'sbr', 'Sabra05G0168600' => 'sbr', 'Sabra05G0168800' => 'sbr', 'Sabra08G0123700' => 'sbr', 'Sabra10G0031900' => 'sbr', 'Sabra13G0039000' => 'sbr', 'SalBow2G0782' => 'sbo', 'SalBow2G1403' => 'sbo', 'SalBow4G0074' => 'sbo', 'SalBow4G2635' => 'sbo', 'SalBow5G3010' => 'sbo', 'Sc05g0000870' => 'sci', 'Sc05g0000890' => 'sci', 'Sc13g0005000' => 'sci', 'Sc13g0005030' => 'sci', 'Sc19g0003790' => 'sci', 'Sc19g0003800' => 'sci', 'Sed0003467' => 'sed', 'Sed0009355' => 'sed', 'Sed0009894' => 'sed', 'Sed0011972' => 'sed', 'Sed0021483' => 'sed', 'Sed0021750' => 'sed', 'Sed0026279' => 'sed', 'SEGI_05312' => 'sgi', 'SEGI_10112' => 'sgi', 'SEGI_15835' => 'sgi', 'SEGI_30386' => 'sgi', 'SEGI_34122' => 'sgi', 'SEGI_35063' => 'sgi', 'SGA_v2.0_scaffold101G29794' => 'sas', 'SGA_v2.0_scaffold1G00573' => 'sas', 'SGA_v2.0_scaffold79G25637' => 'sas', 'SGA_v2.0_scaffold88G27283' => 'sas', 'SGA_v2.0_scaffold88G27285' => 'sas', 'SGA_v2.0_scaffold88G27331' => 'sas', 'SHI09937' => 'shi', 'SMO119G0302' => 'smo', 'SMO137G0231' => 'smo', 'SMO367G1151' => 'smo', 'Solyc02g082000.3' => 'sly', 'Solyc06g031670.3' => 'sly', 'Solyc06g053810.3' => 'sly', 'Solyc07g025457.1' => 'sly', 'Solyc08g059740.1' => 'sly', 'Solyc08g059750.3' => 'sly', 'Solyc09g083370.3' => 'sly', 'Solyc12g038950.3' => 'sly', 'Sopen02g026630' => 'spe', 'Sopen06g018930' => 'spe', 'Sopen06g018940' => 'spe', 'Sopen08g009460' => 'spe', 'Sopen09g032290' => 'spe', 'Sp1g03080' => 'spa', 'Sp1g03090' => 'spa', 'Sp1g05480' => 'spa', 'Sp2g07860' => 'spa', 'Sp2g08430' => 'spa', 'Sp2g08440' => 'spa', 'Sp2g26200' => 'spa', 'Sp4g13170' => 'spa', 'Sp6g33840' => 'spa', 'SpUn1204_0010' => 'spa', 'TAR365G0908' => 'tar', 'TAR381G1270' => 'tar', 'TAR381G1651' => 'tar', 'TAR625G1131' => 'tar', 'TAR633G0962' => 'tar', 'TAR633G1729' => 'tar', 'TAR633G1864' => 'tar', 'TAR636G0221' => 'tar', 'TAR636G0314' => 'tar', 'TAR636G3202' => 'tar', 'THA.LOC104800805' => 'tha', 'THA.LOC104801096' => 'tha', 'THA.LOC104801555' => 'tha', 'THA.LOC104808491' => 'tha', 'THA.LOC104808595' => 'tha', 'THA.LOC104815985' => 'tha', 'THA.LOC104822250' => 'tha', 'THA.LOC104826071' => 'tha', 'Thecc.01G265200' => 'tca', 'Thecc.01G265300' => 'tca', 'Thecc.01G265700' => 'tca', 'Thecc.03G109100' => 'tca', 'Thecc.04G245900' => 'tca', 'Thecc.04G246000' => 'tca', 'Thhalv10003334m.g' => 'esa', 'Thhalv10005508m.g' => 'esa', 'Thhalv10005643m.g' => 'esa', 'Thhalv10007316m.g' => 'esa', 'Thhalv10009006m.g' => 'esa', 'Thhalv10009309m.g' => 'esa', 'Thhalv10014917m.g' => 'esa', 'Thhalv10014919m.g' => 'esa', 'Thhalv10015393m.g' => 'esa', 'Thhalv10016515m.g' => 'esa', 'Thhalv10029242m.g' => 'esa', 'TPR.G16654' => 'tpr', 'TPR.G20589' => 'tpr', 'TPR.G23029' => 'tpr', 'TPR.G27731' => 'tpr', 'TPR.G28889' => 'tpr', 'TPR.G28899' => 'tpr', 'TPR.G30846' => 'tpr', 'TPR.G5452' => 'tpr', 'TPR.G5713' => 'tpr', 'TPR.G9046' => 'tpr', 'TPR.G9061' => 'tpr', 'TWI09G1075' => 'twi', 'TWI12G0806' => 'twi', 'TWI18G0108' => 'twi', 'TWI53G1361' => 'twi', 'TWI73G0185' => 'twi', 'TWI73G0427' => 'twi', 'unitig_37.g12001' => 'ugi', 'unitig_747.g21660' => 'ugi', 'unitig_748.g7232' => 'ugi', 'unitig_748.g7315' => 'ugi', 'unitig_85.g27262' => 'ugi', 'unitig_92.g28220' => 'ugi', 'vmacro02632' => 'vma', 'vmacro08410' => 'vma', 'vmacro08411' => 'vma', 'vmacro15407' => 'vma', 'VMungo0251G3619' => 'vmu', 'VMungo0720G1204' => 'vmu', 'VMungo0720G1918' => 'vmu', 'VMungo0720G2387' => 'vmu', 'VMungo0720G2961' => 'vmu', 'VMungo1215G2154' => 'vmu', 'VMungo1383G2411' => 'vmu', 'Zm00001eb051130' => 'zma', 'Zm00001eb116830' => 'zma', 'Zm00001eb116850' => 'zma', 'Zm00001eb151740' => 'zma', 'Zm00001eb292360' => 'zma', 'Zm00001eb301640' => 'zma' ), 'gf_id' => 'HOM05D000856', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000856' ), 'data_identifier' => 'HOM05D000856', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000856', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p00010' => 'bna', 'A03p04160' => 'bna', 'A03p17160' => 'bna', 'A04p23370' => 'bna', 'A05p14860' => 'bna', 'A08p37020' => 'bna', 'A09p08050' => 'bna', 'A09p66800' => 'bna', 'A09p67940' => 'bna', 'A10p02680' => 'bna', 'A10p05320' => 'bna', 'Aa31LG1G20560' => 'aar', 'Aa31LG1G20610' => 'aar', 'Aa31LG1G7810' => 'aar', 'Aa31LG5G3590' => 'aar', 'Aa31LG5G6140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3819' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4683' => 'aag', 'Actinidia04480' => 'ach', 'Actinidia05466' => 'ach', 'Actinidia08445' => 'ach', 'Actinidia21170' => 'ach', 'Actinidia24812' => 'ach', 'Actinidia24951' => 'ach', 'Actinidia40088' => 'ach', 'Ah.02g111660' => 'amhyb', 'Ah.11g048900' => 'amhyb', 'Ah.11g049910' => 'amhyb', 'AL1G13870' => 'aly', 'AL1G13880' => 'aly', 'AL1G16760' => 'aly', 'AL390U10020' => 'aly', 'AL4G25520' => 'aly', 'AL6G19890' => 'aly', 'AL6G19900' => 'aly', 'AL6G19910' => 'aly', 'AL8G40100' => 'aly', 'Aqoxy2G03562' => 'aox', 'Aqoxy5G00316' => 'aox', 'Aqoxy5G00926' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1628KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1H403S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2FU6SJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.882I6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8YRY2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YN1SN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AF70II' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZA8L1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F916KL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHRD8H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KTZ8QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S22EMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8M29T' => 'arhy', 'AT1G04270' => 'ath', 'AT1G04280' => 'ath', 'AT1G06750' => 'ath', 'AT1G33850' => 'ath', 'AT2G30630' => 'ath', 'AT5G09490' => 'ath', 'AT5G09500' => 'ath', 'AT5G09510' => 'ath', 'AT5G43640' => 'ath', 'AT5G63070' => 'ath', 'ATR0605G315' => 'atr', 'Atru.chr11.175' => 'acertr', 'Atru.chr11.653' => 'acertr', 'Atru.chr3.1616' => 'acertr', 'Atru.chr4.2230' => 'acertr', 'Atru.chr4.2232' => 'acertr', 'Atru.chr5.1598' => 'acertr', 'Atru.chr5.1600' => 'acertr', 'Atru.chr5.2188' => 'acertr', 'AUR62008326' => 'cqu', 'AUR62011922' => 'cqu', 'AUR62011924' => 'cqu', 'AUR62021771' => 'cqu', 'AUR62032237' => 'cqu', 'AUR62032240' => 'cqu', 'BcaB01g05572' => 'bca', 'BcaB02g10337' => 'bca', 'BcaB04g19944' => 'bca', 'BcaB05g21548' => 'bca', 'BcaB05g21549' => 'bca', 'BcaB05g23227' => 'bca', 'BcaB06g26256' => 'bca', 'BcaB06g26257' => 'bca', 'BcaB06g28379' => 'bca', 'BcaC02g11159' => 'bca', 'BcaC03g13258' => 'bca', 'BcaC03g13259' => 'bca', 'BcaC05g24456' => 'bca', 'BcaC05g24457' => 'bca', 'BcaC07g36922' => 'bca', 'BcaC07g36923' => 'bca', 'BcaC07g42050' => 'bca', 'BcaC07g42176' => 'bca', 'BcaC07g42195' => 'bca', 'BcaC07g42196' => 'bca', 'BcaNung06674' => 'bca', 'BolC2t06351H' => 'bol', 'BolC2t06352H' => 'bol', 'BolC3t12993H' => 'bol', 'BolC4t23525H' => 'bol', 'BolC4t27475H' => 'bol', 'BolC5t29025H' => 'bol', 'BolC5t29026H' => 'bol', 'BolC8t46898H' => 'bol', 'BolC8t46899H' => 'bol', 'BolC8t52630H' => 'bol', 'BolC8t52765H' => 'bol', 'BolC9t53824H' => 'bol', 'BraA03t09760Z' => 'bra', 'BraA03t10990Z' => 'bra', 'BraA05t20413Z' => 'bra', 'BraA08t35602Z' => 'bra', 'BraA09t36458Z' => 'bra', 'BraA09t42018Z' => 'bra', 'BraA09t42129Z' => 'bra', 'BraA10t42536Z' => 'bra', 'BraA10t42537Z' => 'bra', 'C01p10690' => 'bna', 'C02p03890' => 'bna', 'C02p03900' => 'bna', 'C03p04620' => 'bna', 'C04p19870' => 'bna', 'C04p59670' => 'bna', 'C05p02460' => 'bna', 'C05p02470' => 'bna', 'C08p00980' => 'bna', 'C08p00990' => 'bna', 'C08p51030' => 'bna', 'C08p52360' => 'bna', 'C09p09120' => 'bna', 'CAN.G19.15' => 'can', 'CAN.G251.10' => 'can', 'CAN.G251.9' => 'can', 'CAN.G398.24' => 'can', 'CAN.G410.32' => 'can', 'CAN.G881.2' => 'can', 'CANSAT01G3025' => 'cansat', 'CANSAT78G1211' => 'cansat', 'CANSAT78G1218' => 'cansat', 'CANSAT78G1521' => 'cansat', 'CANSAT78G1670' => 'cansat', 'CARHR003600' => 'chi', 'CARHR003610' => 'chi', 'CARHR006290' => 'chi', 'CARHR006430' => 'chi', 'CARHR124110' => 'chi', 'CARHR203870' => 'chi', 'CARHR203880' => 'chi', 'CARHR203890' => 'chi', 'CARHR276880' => 'chi', 'Carub.0001s0346' => 'cru', 'Carub.0001s0347' => 'cru', 'Carub.0001s0607' => 'cru', 'Carub.0003s2768' => 'cru', 'Carub.0003s2769' => 'cru', 'Carub.0004s1178' => 'cru', 'Carub.0006s0806' => 'cru', 'Carub.0006s0807' => 'cru', 'Carub.0006s0808' => 'cru', 'Carub.0008s0501' => 'cru', 'Carub.0008s2379' => 'cru', 'Ca_08655_v3' => 'car', 'Ca_08922_v3' => 'car', 'Ca_08923_v3' => 'car', 'Ca_09119_v3' => 'car', 'Ca_09703_v3' => 'car', 'Ca_09705_v3' => 'car', 'Ca_09835_v3' => 'car', 'Ca_26403_v3' => 'car', 'Ca_30719_v3' => 'car', 'CBR_g17958' => 'cbr', 'CBR_g40516' => 'cbr', 'Cc00_g05350' => 'ccan', 'Cc01_g18690' => 'ccan', 'Cc03_g04830' => 'ccan', 'Cc03_g04850' => 'ccan', 'CDE02G4469' => 'cde', 'CDE06G0883' => 'cde', 'CDE06G1295' => 'cde', 'CDE06G1390' => 'cde', 'CDE07G0584' => 'cde', 'CDE07G1084' => 'cde', 'CDE08G1259' => 'cde', 'Cfa002341' => 'cfa', 'Cfa024337' => 'cfa', 'Ciclev10004749m.g' => 'ccl', 'Ciclev10006127m.g' => 'ccl', 'Ciclev10019720m.g' => 'ccl', 'Ciclev10022652m.g' => 'ccl', 'CiPaw.01G190400' => 'cil', 'CiPaw.01G190500' => 'cil', 'CiPaw.02G116400' => 'cil', 'CiPaw.02G116500' => 'cil', 'CiPaw.04G183000' => 'cil', 'CiPaw.04G183300' => 'cil', 'ClCG05G004610' => 'cla', 'ClCG05G004620' => 'cla', 'ClCG06G006730' => 'cla', 'ClCG06G006740' => 'cla', 'ClCG11G003690' => 'cla', 'COL.COLO4_08276' => 'col', 'COL.COLO4_08277' => 'col', 'COL.COLO4_15787' => 'col', 'COL.COLO4_15789' => 'col', 'Cpa.g.c44815' => 'cpa', 'Cpa.g.sc52.144' => 'cpa', 'Cpa.g.sc58.46' => 'cpa', 'Cpa.g.sc58.47' => 'cpa', 'Cre08.g360900' => 'cre', 'CsaV3_2G013030' => 'csa', 'CsaV3_2G013050' => 'csa', 'CsaV3_2G015620' => 'csa', 'CsaV3_3G012590' => 'csa', 'CsaV3_3G012600' => 'csa', 'CSS0001641' => 'camsi', 'CSS0008310' => 'camsi', 'CSS0013011' => 'camsi', 'CSS0017147' => 'camsi', 'CSS0022970' => 'camsi', 'CSS0025655' => 'camsi', 'CSS0028665' => 'camsi', 'CSS0029117' => 'camsi', 'CSS0032024' => 'camsi', 'CSS0039681' => 'camsi', 'CSS0046516' => 'camsi', 'CSS0050307' => 'camsi', 'DCAR_005871' => 'dca', 'DCAR_007342' => 'dca', 'DCAR_024228' => 'dca', 'DCAR_027277' => 'dca', 'DCAR_030718' => 'dca', 'Dinv20287' => 'din', 'Dinv22461' => 'din', 'Dinv22464' => 'din', 'Dinv29912' => 'din', 'Dinv29913' => 'din', 'Dinv34580' => 'din', 'Dinv34582' => 'din', 'Dinv44632' => 'din', 'Duzib052G0266' => 'dzi', 'Duzib133G0907' => 'dzi', 'Duzib133G1034' => 'dzi', 'Duzib138G0207' => 'dzi', 'Duzib138G0491' => 'dzi', 'Duzib151G0812' => 'dzi', 'Duzib151G1166' => 'dzi', 'Duzib168G0192' => 'dzi', 'Duzib211G0077' => 'dzi', 'Duzib212G0429' => 'dzi', 'Duzib212G0472' => 'dzi', 'ECA233G2617' => 'eca', 'ECA236G4188' => 'eca', 'ECA240G0936' => 'eca', 'ECA240G1129' => 'eca', 'ECA247G0623' => 'eca', 'EL10Ac5g10451' => 'bvu', 'EL10Ac5g10453' => 'bvu', 'EL10Ac5g10894' => 'bvu', 'Eucgr.H00192' => 'egr', 'Eucgr.H00193' => 'egr', 'Eucgr.H00194' => 'egr', 'Eucgr.J01562' => 'egr', 'Eucgr.K03301' => 'egr', 'FAN02G0632' => 'fan', 'FAN05G5378' => 'fan', 'FAN09G3247' => 'fan', 'FAN12G0435' => 'fan', 'FAN12G2426' => 'fan', 'FAN14G1707' => 'fan', 'FAN14G4725' => 'fan', 'FAN15G2071' => 'fan', 'FAN17G3065' => 'fan', 'FAN19G1376' => 'fan', 'FAN20G0354' => 'fan', 'FAN20G2429' => 'fan', 'FAN20G2658' => 'fan', 'FAN24G2343' => 'fan', 'FAN27G2362' => 'fan', 'FAN28G1765' => 'fan', 'FvH4_1g16020' => 'fve', 'FvH4_2g04890' => 'fve', 'FvH4_2g22270' => 'fve', 'FvH4_4g02630' => 'fve', 'FvH4_4g02640' => 'fve', 'FvH4_6g02650' => 'fve', 'Glyma.02G140600' => 'gma', 'Glyma.03G159900' => 'gma', 'Glyma.05G234800' => 'gma', 'Glyma.07G269600' => 'gma', 'Glyma.08G042300' => 'gma', 'Glyma.10G033500' => 'gma', 'Glyma.10G185200' => 'gma', 'Glyma.17G004300' => 'gma', 'Glyma.19G161900' => 'gma', 'Glyma.20G205100' => 'gma', 'Glyma.20G205200' => 'gma', 'Gohir.A01G139101' => 'ghi', 'Gohir.A02G035600' => 'ghi', 'Gohir.A02G117901' => 'ghi', 'Gohir.A07G210100' => 'ghi', 'Gohir.A07G210200' => 'ghi', 'Gohir.A08G061100' => 'ghi', 'Gohir.A09G223000' => 'ghi', 'Gohir.A09G223100' => 'ghi', 'Gohir.A10G113900' => 'ghi', 'Gohir.A10G114000' => 'ghi', 'Gohir.D02G042300' => 'ghi', 'Gohir.D07G216100' => 'ghi', 'Gohir.D07G216200' => 'ghi', 'Gohir.D08G070400' => 'ghi', 'Gohir.D09G225000' => 'ghi', 'Gohir.D09G225100' => 'ghi', 'Gohir.D10G152300' => 'ghi', 'Gohir.D10G153200' => 'ghi', 'Gohir.D11G133701' => 'ghi', 'Gorai.004G074100' => 'gra', 'Gorai.005G046800' => 'gra', 'Gorai.006G246500' => 'gra', 'Gorai.006G246600' => 'gra', 'Gorai.007G142900' => 'gra', 'Gorai.011G171000' => 'gra', 'Gorai.011G171100' => 'gra', 'Gorai.013G104300' => 'gra', 'Gorai.013G104400' => 'gra', 'GSVIVG01000754001' => 'vvi', 'GSVIVG01000756001' => 'vvi', 'GSVIVG01010903001' => 'vvi', 'GSVIVG01017623001' => 'vvi', 'GSVIVG01018113001' => 'vvi', 'GSVIVG01018116001' => 'vvi', 'GSVIVG01018118001' => 'vvi', 'HanXRQChr03g0076211' => 'han', 'HanXRQChr03g0092431' => 'han', 'HanXRQChr03g0092441' => 'han', 'HanXRQChr03g0092591' => 'han', 'HanXRQChr03g0092671' => 'han', 'HanXRQChr03g0092681' => 'han', 'HanXRQChr03g0092691' => 'han', 'HanXRQChr03g0092701' => 'han', 'HanXRQChr03g0092721' => 'han', 'HanXRQChr03g0092731' => 'han', 'HanXRQChr04g0113681' => 'han', 'HanXRQChr10g0281371' => 'han', 'HanXRQChr11g0337141' => 'han', 'HanXRQChr13g0424521' => 'han', 'HanXRQChr13g0424531' => 'han', 'HanXRQChr13g0424541' => 'han', 'HanXRQChr16g0498221' => 'han', 'Haze_04377' => 'cav', 'Haze_11298' => 'cav', 'Haze_24547' => 'cav', 'Haze_24550' => 'cav', 'Haze_26587' => 'cav', 'Hma1.2p1_0650F.1_g195410' => 'hma', 'Hma1.2p1_0893F.1_g233470' => 'hma', 'HPP92_006508' => 'vpl', 'HPP92_024780' => 'vpl', 'Hund02688' => 'sun', 'Hund09380' => 'sun', 'Hund09381' => 'sun', 'Hund09832' => 'sun', 'Hund09833' => 'sun', 'Hund11351' => 'sun', 'Hund11513' => 'sun', 'Lalb_Chr06g0162591' => 'lal', 'Lalb_Chr06g0162601' => 'lal', 'Lalb_Chr06g0169321' => 'lal', 'Lalb_Chr09g0330951' => 'lal', 'Lalb_Chr16g0387631' => 'lal', 'Lalb_Chr21g0306241' => 'lal', 'Lalb_Chr25g0290051' => 'lal', 'Lalb_Chr25g0290061' => 'lal', 'Lalb_Chr25g0290071' => 'lal', 'Lj1g0003876' => 'lja', 'Lj1P1207T36' => 'lonja', 'Lj2C1156G12' => 'lonja', 'Lj3A793G39' => 'lonja', 'Lj3C580G2' => 'lonja', 'Lj3C780G2' => 'lonja', 'Lj3C780T4' => 'lonja', 'Lj3C793G9' => 'lonja', 'Lj4g0012960' => 'lja', 'Lj5g0021252' => 'lja', 'Lj5g0021484' => 'lja', 'Lj5g0024528' => 'lja', 'Lj6A399T12' => 'lonja', 'Lj6A656G65' => 'lonja', 'Lsat_1_v5_gn_3_125500' => 'lsa', 'Lsat_1_v5_gn_3_125540' => 'lsa', 'Lsat_1_v5_gn_5_72701' => 'lsa', 'Lsat_1_v5_gn_8_91560' => 'lsa', 'Lsat_1_v5_gn_9_9640' => 'lsa', 'Manes.01G200600' => 'mes', 'Manes.01G200700' => 'mes', 'Manes.03G168900' => 'mes', 'Manes.03G169000' => 'mes', 'Manes.05G085801' => 'mes', 'Manes.05G086200' => 'mes', 'Manes.15G036700' => 'mes', 'Manes.15G036900' => 'mes', 'Mapoly0004s0172' => 'mpo', 'Mapoly0023s0001' => 'mpo', 'Mapoly0142s0012' => 'mpo', 'MBI01_g32854_MAGBIO' => 'mbi', 'MBI11_g24427_MAGBIO' => 'mbi', 'MBI11_g47319_MAGBIO' => 'mbi', 'MCO01G433' => 'mco', 'MD00G1187800' => 'mdo', 'MD04G1226500' => 'mdo', 'MD05G1203900' => 'mdo', 'MD10G1191100' => 'mdo', 'MD12G1243500' => 'mdo', 'MD13G1207000' => 'mdo', 'MD13G1207100' => 'mdo', 'MD16G1208600' => 'mdo', 'Medtr1g050352' => 'mtr', 'Medtr1g070385' => 'mtr', 'Medtr1g070450' => 'mtr', 'Medtr1g075200' => 'mtr', 'Medtr1g075250' => 'mtr', 'Medtr1g075260' => 'mtr', 'Medtr1g475250' => 'mtr', 'Medtr4g075450' => 'mtr', 'Medtr7g096300' => 'mtr', 'Medtr8g105110' => 'mtr', 'MELO3C006470.2' => 'cme', 'MELO3C006471.2' => 'cme', 'MELO3C020772.2' => 'cme', 'MELO3C026780.2' => 'cme', 'MELO3C026781.2' => 'cme', 'Migut.D00390' => 'egut', 'Migut.G00435' => 'egut', 'Migut.G00436' => 'egut', 'Migut.G00718' => 'egut', 'MSTRG.21891' => 'ama', 'MSTRG.26910' => 'ama', 'MSTRG.4099' => 'ama', 'MSTRG.9925' => 'ama', 'Nitab4.5_0000165g0010' => 'nta', 'Nitab4.5_0000209g0180' => 'nta', 'Nitab4.5_0000244g0440' => 'nta', 'Nitab4.5_0000525g0220' => 'nta', 'Nitab4.5_0001597g0020' => 'nta', 'Nitab4.5_0001878g0040' => 'nta', 'Nitab4.5_0001878g0060' => 'nta', 'Nitab4.5_0002838g0100' => 'nta', 'Nitab4.5_0002838g0120' => 'nta', 'Nitab4.5_0004798g0030' => 'nta', 'Nitab4.5_0005420g0010' => 'nta', 'Nitab4.5_0005507g0010' => 'nta', 'Nitab4.5_0005574g0020' => 'nta', 'Nitab4.5_0005838g0010' => 'nta', 'Nitab4.5_0010580g0020' => 'nta', 'Nn1g02599' => 'nnu', 'Nn1g02608' => 'nnu', 'Nn3g17742' => 'nnu', 'Nn3g19534' => 'nnu', 'Nn3g19535' => 'nnu', 'Oeu008790.1' => 'oeu', 'Oeu008792.1' => 'oeu', 'Oeu032590.1' => 'oeu', 'Oeu035349.1' => 'oeu', 'Oeu049791.1' => 'oeu', 'Os01g0774500' => 'osa', 'Os03g0628800' => 'osa', 'Os03g0798600' => 'osa', 'Os05g0508800' => 'osa', 'Peaxi162Scf00036g02018' => 'pax', 'Peaxi162Scf00578g00032' => 'pax', 'Peaxi162Scf00578g00317' => 'pax', 'Peaxi162Scf00785g00114' => 'pax', 'Peaxi162Scf00813g00119' => 'pax', 'Peaxi162Scf00906g00227' => 'pax', 'PGR004G0875' => 'pgr', 'PGR004G2424' => 'pgr', 'PGR031G1239' => 'pgr', 'PGR031G2474' => 'pgr', 'PGR044G0423' => 'pgr', 'PGSC0003DMG400001128' => 'stu', 'PGSC0003DMG400007336' => 'stu', 'PGSC0003DMG400016318' => 'stu', 'PGSC0003DMG400016319' => 'stu', 'PGSC0003DMG400018074' => 'stu', 'Phvul.001G157700' => 'pvu', 'Phvul.002G148550' => 'pvu', 'Phvul.002G320200' => 'pvu', 'Phvul.003G089200' => 'pvu', 'Phvul.007G126000' => 'pvu', 'Phvul.007G126100' => 'pvu', 'Phvul.007G178000' => 'pvu', 'Phvul.007G178200' => 'pvu', 'Potri.002G043000' => 'ptr', 'Potri.002G043200' => 'ptr', 'Potri.003G123750' => 'ptr', 'Potri.005G055401' => 'ptr', 'Potri.005G219700' => 'ptr', 'Potri.005G220000' => 'ptr', 'Potri.008G161901' => 'ptr', 'Potri.008G162000' => 'ptr', 'Potri.008G162400' => 'ptr', 'Potri.010G076900' => 'ptr', 'Pp3c12_9180' => 'ppa', 'Pp3c13_19770' => 'ppa', 'Pp3c14_22950' => 'ppa', 'Pp3c16_12160' => 'ppa', 'Pp3c27_7820' => 'ppa', 'Pp3c2_3490' => 'ppa', 'Pp3c3_23700' => 'ppa', 'Pp3c3_36520' => 'ppa', 'Pp3c4_15250' => 'ppa', 'PRCOL_00007002' => 'pco', 'Prupe.1G030600' => 'ppe', 'Prupe.1G030700' => 'ppe', 'Prupe.6G345200' => 'ppe', 'Prupe.8G230300' => 'ppe', 'Prupe.8G230500' => 'ppe', 'Psat3g059600' => 'psa', 'Psat5g200920' => 'psa', 'Psat6g056440' => 'psa', 'Psat6g057360' => 'psa', 'Psat6g134120' => 'psa', 'Psat6g134160' => 'psa', 'Psat7g008640' => 'psa', 'Psat7g185240' => 'psa', 'PSO017G1330' => 'pso', 'PSO063G6097' => 'pso', 'PSO170G0835' => 'pso', 'PSO170G2499' => 'pso', 'PSO210G5058' => 'pso', 'PSO210G6154' => 'pso', 'PSO585G0031' => 'pso', 'PSO832G0264' => 'pso', 'PSO832G4288' => 'pso', 'QL03p027355' => 'qlo', 'QL03p027430' => 'qlo', 'QL04p081380' => 'qlo', 'QL06p015642' => 'qlo', 'QL06p015650' => 'qlo', 'QL06p015686' => 'qlo', 'QL12p042927' => 'qlo', 'QL93p1863_0035' => 'qlo', 'RcHm_v2.0_Chr3g0450581' => 'rch', 'RcHm_v2.0_Chr4g0390371' => 'rch', 'RcHm_v2.0_Chr4g0390381' => 'rch', 'RcHm_v2.0_Chr4g0390491' => 'rch', 'RcHm_v2.0_Chr4g0390501' => 'rch', 'RcHm_v2.0_Chr6g0289231' => 'rch', 'Rhsim04G0190400' => 'rsi', 'Rhsim04G0190500' => 'rsi', 'Rhsim04G0190600' => 'rsi', 'Rhsim13G0031400' => 'rsi', 'Rhsim13G0165600' => 'rsi', 'RhsimUnG0114600' => 'rsi', 'RhsimUnG0114700' => 'rsi', 'Sabra02G0034800' => 'sbr', 'Sabra02G0035100' => 'sbr', 'Sabra05G0168600' => 'sbr', 'Sabra05G0168800' => 'sbr', 'Sabra08G0123700' => 'sbr', 'Sabra10G0031900' => 'sbr', 'Sabra13G0039000' => 'sbr', 'SalBow2G0782' => 'sbo', 'SalBow2G1403' => 'sbo', 'SalBow4G0074' => 'sbo', 'SalBow4G2635' => 'sbo', 'SalBow5G3010' => 'sbo', 'Sc05g0000870' => 'sci', 'Sc05g0000890' => 'sci', 'Sc13g0005000' => 'sci', 'Sc13g0005030' => 'sci', 'Sc19g0003790' => 'sci', 'Sc19g0003800' => 'sci', 'Sed0003467' => 'sed', 'Sed0009355' => 'sed', 'Sed0009894' => 'sed', 'Sed0011972' => 'sed', 'Sed0021483' => 'sed', 'Sed0021750' => 'sed', 'Sed0026279' => 'sed', 'SEGI_05312' => 'sgi', 'SEGI_10112' => 'sgi', 'SEGI_15835' => 'sgi', 'SEGI_30386' => 'sgi', 'SEGI_34122' => 'sgi', 'SEGI_35063' => 'sgi', 'SGA_v2.0_scaffold101G29794' => 'sas', 'SGA_v2.0_scaffold1G00573' => 'sas', 'SGA_v2.0_scaffold79G25637' => 'sas', 'SGA_v2.0_scaffold88G27283' => 'sas', 'SGA_v2.0_scaffold88G27285' => 'sas', 'SGA_v2.0_scaffold88G27331' => 'sas', 'SHI09937' => 'shi', 'SMO119G0302' => 'smo', 'SMO137G0231' => 'smo', 'SMO367G1151' => 'smo', 'Solyc02g082000.3' => 'sly', 'Solyc06g031670.3' => 'sly', 'Solyc06g053810.3' => 'sly', 'Solyc07g025457.1' => 'sly', 'Solyc08g059740.1' => 'sly', 'Solyc08g059750.3' => 'sly', 'Solyc09g083370.3' => 'sly', 'Solyc12g038950.3' => 'sly', 'Sopen02g026630' => 'spe', 'Sopen06g018930' => 'spe', 'Sopen06g018940' => 'spe', 'Sopen08g009460' => 'spe', 'Sopen09g032290' => 'spe', 'Sp1g03080' => 'spa', 'Sp1g03090' => 'spa', 'Sp1g05480' => 'spa', 'Sp2g07860' => 'spa', 'Sp2g08430' => 'spa', 'Sp2g08440' => 'spa', 'Sp2g26200' => 'spa', 'Sp4g13170' => 'spa', 'Sp6g33840' => 'spa', 'SpUn1204_0010' => 'spa', 'TAR365G0908' => 'tar', 'TAR381G1270' => 'tar', 'TAR381G1651' => 'tar', 'TAR625G1131' => 'tar', 'TAR633G0962' => 'tar', 'TAR633G1729' => 'tar', 'TAR633G1864' => 'tar', 'TAR636G0221' => 'tar', 'TAR636G0314' => 'tar', 'TAR636G3202' => 'tar', 'THA.LOC104800805' => 'tha', 'THA.LOC104801096' => 'tha', 'THA.LOC104801555' => 'tha', 'THA.LOC104808491' => 'tha', 'THA.LOC104808595' => 'tha', 'THA.LOC104815985' => 'tha', 'THA.LOC104822250' => 'tha', 'THA.LOC104826071' => 'tha', 'Thecc.01G265200' => 'tca', 'Thecc.01G265300' => 'tca', 'Thecc.01G265700' => 'tca', 'Thecc.03G109100' => 'tca', 'Thecc.04G245900' => 'tca', 'Thecc.04G246000' => 'tca', 'Thhalv10003334m.g' => 'esa', 'Thhalv10005508m.g' => 'esa', 'Thhalv10005643m.g' => 'esa', 'Thhalv10007316m.g' => 'esa', 'Thhalv10009006m.g' => 'esa', 'Thhalv10009309m.g' => 'esa', 'Thhalv10014917m.g' => 'esa', 'Thhalv10014919m.g' => 'esa', 'Thhalv10015393m.g' => 'esa', 'Thhalv10016515m.g' => 'esa', 'Thhalv10029242m.g' => 'esa', 'TPR.G16654' => 'tpr', 'TPR.G20589' => 'tpr', 'TPR.G23029' => 'tpr', 'TPR.G27731' => 'tpr', 'TPR.G28889' => 'tpr', 'TPR.G28899' => 'tpr', 'TPR.G30846' => 'tpr', 'TPR.G5452' => 'tpr', 'TPR.G5713' => 'tpr', 'TPR.G9046' => 'tpr', 'TPR.G9061' => 'tpr', 'TWI09G1075' => 'twi', 'TWI12G0806' => 'twi', 'TWI18G0108' => 'twi', 'TWI53G1361' => 'twi', 'TWI73G0185' => 'twi', 'TWI73G0427' => 'twi', 'unitig_37.g12001' => 'ugi', 'unitig_747.g21660' => 'ugi', 'unitig_748.g7232' => 'ugi', 'unitig_748.g7315' => 'ugi', 'unitig_85.g27262' => 'ugi', 'unitig_92.g28220' => 'ugi', 'vmacro02632' => 'vma', 'vmacro08410' => 'vma', 'vmacro08411' => 'vma', 'vmacro15407' => 'vma', 'VMungo0251G3619' => 'vmu', 'VMungo0720G1204' => 'vmu', 'VMungo0720G1918' => 'vmu', 'VMungo0720G2387' => 'vmu', 'VMungo0720G2961' => 'vmu', 'VMungo1215G2154' => 'vmu', 'VMungo1383G2411' => 'vmu', 'Zm00001eb051130' => 'zma', 'Zm00001eb116830' => 'zma', 'Zm00001eb116850' => 'zma', 'Zm00001eb151740' => 'zma', 'Zm00001eb292360' => 'zma', 'Zm00001eb301640' => 'zma' ) $gf_id = 'HOM05D000856' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000856' ) $data_identifier = 'HOM05D000856' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 13, 'ath' => (int) 10, 'atr' => (int) 1, 'acertr' => (int) 8, 'cqu' => (int) 6, 'bca' => (int) 21, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 11, 'car' => (int) 9, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 8, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 5, 'fan' => (int) 16, 'fve' => (int) 6, 'gma' => (int) 11, 'ghi' => (int) 19, 'gra' => (int) 9, 'vvi' => (int) 7, 'han' => (int) 17, 'cav' => (int) 5, 'hma' => (int) 2, 'vpl' => (int) 2, 'sun' => (int) 7, 'lal' => (int) 9, 'lja' => (int) 5, 'lonja' => (int) 9, 'lsa' => (int) 5, 'mes' => (int) 8, 'mpo' => (int) 3, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 10, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 15, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 9, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 9, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 6, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 5, 'spa' => (int) 10, 'tar' => (int) 10, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 11, 'tpr' => (int) 11, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 4, 'vmu' => (int) 7, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb301640' $species_info = array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ) $local_species = 'han' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000856', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p00010' => 'bna', 'A03p04160' => 'bna', 'A03p17160' => 'bna', 'A04p23370' => 'bna', 'A05p14860' => 'bna', 'A08p37020' => 'bna', 'A09p08050' => 'bna', 'A09p66800' => 'bna', 'A09p67940' => 'bna', 'A10p02680' => 'bna', 'A10p05320' => 'bna', 'Aa31LG1G20560' => 'aar', 'Aa31LG1G20610' => 'aar', 'Aa31LG1G7810' => 'aar', 'Aa31LG5G3590' => 'aar', 'Aa31LG5G6140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3819' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4683' => 'aag', 'Actinidia04480' => 'ach', 'Actinidia05466' => 'ach', 'Actinidia08445' => 'ach', 'Actinidia21170' => 'ach', 'Actinidia24812' => 'ach', 'Actinidia24951' => 'ach', 'Actinidia40088' => 'ach', 'Ah.02g111660' => 'amhyb', 'Ah.11g048900' => 'amhyb', 'Ah.11g049910' => 'amhyb', 'AL1G13870' => 'aly', 'AL1G13880' => 'aly', 'AL1G16760' => 'aly', 'AL390U10020' => 'aly', 'AL4G25520' => 'aly', 'AL6G19890' => 'aly', 'AL6G19900' => 'aly', 'AL6G19910' => 'aly', 'AL8G40100' => 'aly', 'Aqoxy2G03562' => 'aox', 'Aqoxy5G00316' => 'aox', 'Aqoxy5G00926' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1628KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1H403S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2FU6SJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.882I6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8YRY2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YN1SN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AF70II' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZA8L1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F916KL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHRD8H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KTZ8QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S22EMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8M29T' => 'arhy', 'AT1G04270' => 'ath', 'AT1G04280' => 'ath', 'AT1G06750' => 'ath', 'AT1G33850' => 'ath', 'AT2G30630' => 'ath', 'AT5G09490' => 'ath', 'AT5G09500' => 'ath', 'AT5G09510' => 'ath', 'AT5G43640' => 'ath', 'AT5G63070' => 'ath', 'ATR0605G315' => 'atr', 'Atru.chr11.175' => 'acertr', 'Atru.chr11.653' => 'acertr', 'Atru.chr3.1616' => 'acertr', 'Atru.chr4.2230' => 'acertr', 'Atru.chr4.2232' => 'acertr', 'Atru.chr5.1598' => 'acertr', 'Atru.chr5.1600' => 'acertr', 'Atru.chr5.2188' => 'acertr', 'AUR62008326' => 'cqu', 'AUR62011922' => 'cqu', 'AUR62011924' => 'cqu', 'AUR62021771' => 'cqu', 'AUR62032237' => 'cqu', 'AUR62032240' => 'cqu', 'BcaB01g05572' => 'bca', 'BcaB02g10337' => 'bca', 'BcaB04g19944' => 'bca', 'BcaB05g21548' => 'bca', 'BcaB05g21549' => 'bca', 'BcaB05g23227' => 'bca', 'BcaB06g26256' => 'bca', 'BcaB06g26257' => 'bca', 'BcaB06g28379' => 'bca', 'BcaC02g11159' => 'bca', 'BcaC03g13258' => 'bca', 'BcaC03g13259' => 'bca', 'BcaC05g24456' => 'bca', 'BcaC05g24457' => 'bca', 'BcaC07g36922' => 'bca', 'BcaC07g36923' => 'bca', 'BcaC07g42050' => 'bca', 'BcaC07g42176' => 'bca', 'BcaC07g42195' => 'bca', 'BcaC07g42196' => 'bca', 'BcaNung06674' => 'bca', 'BolC2t06351H' => 'bol', 'BolC2t06352H' => 'bol', 'BolC3t12993H' => 'bol', 'BolC4t23525H' => 'bol', 'BolC4t27475H' => 'bol', 'BolC5t29025H' => 'bol', 'BolC5t29026H' => 'bol', 'BolC8t46898H' => 'bol', 'BolC8t46899H' => 'bol', 'BolC8t52630H' => 'bol', 'BolC8t52765H' => 'bol', 'BolC9t53824H' => 'bol', 'BraA03t09760Z' => 'bra', 'BraA03t10990Z' => 'bra', 'BraA05t20413Z' => 'bra', 'BraA08t35602Z' => 'bra', 'BraA09t36458Z' => 'bra', 'BraA09t42018Z' => 'bra', 'BraA09t42129Z' => 'bra', 'BraA10t42536Z' => 'bra', 'BraA10t42537Z' => 'bra', 'C01p10690' => 'bna', 'C02p03890' => 'bna', 'C02p03900' => 'bna', 'C03p04620' => 'bna', 'C04p19870' => 'bna', 'C04p59670' => 'bna', 'C05p02460' => 'bna', 'C05p02470' => 'bna', 'C08p00980' => 'bna', 'C08p00990' => 'bna', 'C08p51030' => 'bna', 'C08p52360' => 'bna', 'C09p09120' => 'bna', 'CAN.G19.15' => 'can', 'CAN.G251.10' => 'can', 'CAN.G251.9' => 'can', 'CAN.G398.24' => 'can', 'CAN.G410.32' => 'can', 'CAN.G881.2' => 'can', 'CANSAT01G3025' => 'cansat', 'CANSAT78G1211' => 'cansat', 'CANSAT78G1218' => 'cansat', 'CANSAT78G1521' => 'cansat', 'CANSAT78G1670' => 'cansat', 'CARHR003600' => 'chi', 'CARHR003610' => 'chi', 'CARHR006290' => 'chi', 'CARHR006430' => 'chi', 'CARHR124110' => 'chi', 'CARHR203870' => 'chi', 'CARHR203880' => 'chi', 'CARHR203890' => 'chi', 'CARHR276880' => 'chi', 'Carub.0001s0346' => 'cru', 'Carub.0001s0347' => 'cru', 'Carub.0001s0607' => 'cru', 'Carub.0003s2768' => 'cru', 'Carub.0003s2769' => 'cru', 'Carub.0004s1178' => 'cru', 'Carub.0006s0806' => 'cru', 'Carub.0006s0807' => 'cru', 'Carub.0006s0808' => 'cru', 'Carub.0008s0501' => 'cru', 'Carub.0008s2379' => 'cru', 'Ca_08655_v3' => 'car', 'Ca_08922_v3' => 'car', 'Ca_08923_v3' => 'car', 'Ca_09119_v3' => 'car', 'Ca_09703_v3' => 'car', 'Ca_09705_v3' => 'car', 'Ca_09835_v3' => 'car', 'Ca_26403_v3' => 'car', 'Ca_30719_v3' => 'car', 'CBR_g17958' => 'cbr', 'CBR_g40516' => 'cbr', 'Cc00_g05350' => 'ccan', 'Cc01_g18690' => 'ccan', 'Cc03_g04830' => 'ccan', 'Cc03_g04850' => 'ccan', 'CDE02G4469' => 'cde', 'CDE06G0883' => 'cde', 'CDE06G1295' => 'cde', 'CDE06G1390' => 'cde', 'CDE07G0584' => 'cde', 'CDE07G1084' => 'cde', 'CDE08G1259' => 'cde', 'Cfa002341' => 'cfa', 'Cfa024337' => 'cfa', 'Ciclev10004749m.g' => 'ccl', 'Ciclev10006127m.g' => 'ccl', 'Ciclev10019720m.g' => 'ccl', 'Ciclev10022652m.g' => 'ccl', 'CiPaw.01G190400' => 'cil', 'CiPaw.01G190500' => 'cil', 'CiPaw.02G116400' => 'cil', 'CiPaw.02G116500' => 'cil', 'CiPaw.04G183000' => 'cil', 'CiPaw.04G183300' => 'cil', 'ClCG05G004610' => 'cla', 'ClCG05G004620' => 'cla', 'ClCG06G006730' => 'cla', 'ClCG06G006740' => 'cla', 'ClCG11G003690' => 'cla', 'COL.COLO4_08276' => 'col', 'COL.COLO4_08277' => 'col', 'COL.COLO4_15787' => 'col', 'COL.COLO4_15789' => 'col', 'Cpa.g.c44815' => 'cpa', 'Cpa.g.sc52.144' => 'cpa', 'Cpa.g.sc58.46' => 'cpa', 'Cpa.g.sc58.47' => 'cpa', 'Cre08.g360900' => 'cre', 'CsaV3_2G013030' => 'csa', 'CsaV3_2G013050' => 'csa', 'CsaV3_2G015620' => 'csa', 'CsaV3_3G012590' => 'csa', 'CsaV3_3G012600' => 'csa', 'CSS0001641' => 'camsi', 'CSS0008310' => 'camsi', 'CSS0013011' => 'camsi', 'CSS0017147' => 'camsi', 'CSS0022970' => 'camsi', 'CSS0025655' => 'camsi', 'CSS0028665' => 'camsi', 'CSS0029117' => 'camsi', 'CSS0032024' => 'camsi', 'CSS0039681' => 'camsi', 'CSS0046516' => 'camsi', 'CSS0050307' => 'camsi', 'DCAR_005871' => 'dca', 'DCAR_007342' => 'dca', 'DCAR_024228' => 'dca', 'DCAR_027277' => 'dca', 'DCAR_030718' => 'dca', 'Dinv20287' => 'din', 'Dinv22461' => 'din', 'Dinv22464' => 'din', 'Dinv29912' => 'din', 'Dinv29913' => 'din', 'Dinv34580' => 'din', 'Dinv34582' => 'din', 'Dinv44632' => 'din', 'Duzib052G0266' => 'dzi', 'Duzib133G0907' => 'dzi', 'Duzib133G1034' => 'dzi', 'Duzib138G0207' => 'dzi', 'Duzib138G0491' => 'dzi', 'Duzib151G0812' => 'dzi', 'Duzib151G1166' => 'dzi', 'Duzib168G0192' => 'dzi', 'Duzib211G0077' => 'dzi', 'Duzib212G0429' => 'dzi', 'Duzib212G0472' => 'dzi', 'ECA233G2617' => 'eca', 'ECA236G4188' => 'eca', 'ECA240G0936' => 'eca', 'ECA240G1129' => 'eca', 'ECA247G0623' => 'eca', 'EL10Ac5g10451' => 'bvu', 'EL10Ac5g10453' => 'bvu', 'EL10Ac5g10894' => 'bvu', 'Eucgr.H00192' => 'egr', 'Eucgr.H00193' => 'egr', 'Eucgr.H00194' => 'egr', 'Eucgr.J01562' => 'egr', 'Eucgr.K03301' => 'egr', 'FAN02G0632' => 'fan', 'FAN05G5378' => 'fan', 'FAN09G3247' => 'fan', 'FAN12G0435' => 'fan', 'FAN12G2426' => 'fan', 'FAN14G1707' => 'fan', 'FAN14G4725' => 'fan', 'FAN15G2071' => 'fan', 'FAN17G3065' => 'fan', 'FAN19G1376' => 'fan', 'FAN20G0354' => 'fan', 'FAN20G2429' => 'fan', 'FAN20G2658' => 'fan', 'FAN24G2343' => 'fan', 'FAN27G2362' => 'fan', 'FAN28G1765' => 'fan', 'FvH4_1g16020' => 'fve', 'FvH4_2g04890' => 'fve', 'FvH4_2g22270' => 'fve', 'FvH4_4g02630' => 'fve', 'FvH4_4g02640' => 'fve', 'FvH4_6g02650' => 'fve', 'Glyma.02G140600' => 'gma', 'Glyma.03G159900' => 'gma', 'Glyma.05G234800' => 'gma', 'Glyma.07G269600' => 'gma', 'Glyma.08G042300' => 'gma', 'Glyma.10G033500' => 'gma', 'Glyma.10G185200' => 'gma', 'Glyma.17G004300' => 'gma', 'Glyma.19G161900' => 'gma', 'Glyma.20G205100' => 'gma', 'Glyma.20G205200' => 'gma', 'Gohir.A01G139101' => 'ghi', 'Gohir.A02G035600' => 'ghi', 'Gohir.A02G117901' => 'ghi', 'Gohir.A07G210100' => 'ghi', 'Gohir.A07G210200' => 'ghi', 'Gohir.A08G061100' => 'ghi', 'Gohir.A09G223000' => 'ghi', 'Gohir.A09G223100' => 'ghi', 'Gohir.A10G113900' => 'ghi', 'Gohir.A10G114000' => 'ghi', 'Gohir.D02G042300' => 'ghi', 'Gohir.D07G216100' => 'ghi', 'Gohir.D07G216200' => 'ghi', 'Gohir.D08G070400' => 'ghi', 'Gohir.D09G225000' => 'ghi', 'Gohir.D09G225100' => 'ghi', 'Gohir.D10G152300' => 'ghi', 'Gohir.D10G153200' => 'ghi', 'Gohir.D11G133701' => 'ghi', 'Gorai.004G074100' => 'gra', 'Gorai.005G046800' => 'gra', 'Gorai.006G246500' => 'gra', 'Gorai.006G246600' => 'gra', 'Gorai.007G142900' => 'gra', 'Gorai.011G171000' => 'gra', 'Gorai.011G171100' => 'gra', 'Gorai.013G104300' => 'gra', 'Gorai.013G104400' => 'gra', 'GSVIVG01000754001' => 'vvi', 'GSVIVG01000756001' => 'vvi', 'GSVIVG01010903001' => 'vvi', 'GSVIVG01017623001' => 'vvi', 'GSVIVG01018113001' => 'vvi', 'GSVIVG01018116001' => 'vvi', 'GSVIVG01018118001' => 'vvi', 'HanXRQChr03g0076211' => 'han', 'HanXRQChr03g0092431' => 'han', 'HanXRQChr03g0092441' => 'han', 'HanXRQChr03g0092591' => 'han', 'HanXRQChr03g0092671' => 'han', 'HanXRQChr03g0092681' => 'han', 'HanXRQChr03g0092691' => 'han', 'HanXRQChr03g0092701' => 'han', 'HanXRQChr03g0092721' => 'han', 'HanXRQChr03g0092731' => 'han', 'HanXRQChr04g0113681' => 'han', 'HanXRQChr10g0281371' => 'han', 'HanXRQChr11g0337141' => 'han', 'HanXRQChr13g0424521' => 'han', 'HanXRQChr13g0424531' => 'han', 'HanXRQChr13g0424541' => 'han', 'HanXRQChr16g0498221' => 'han', 'Haze_04377' => 'cav', 'Haze_11298' => 'cav', 'Haze_24547' => 'cav', 'Haze_24550' => 'cav', 'Haze_26587' => 'cav', 'Hma1.2p1_0650F.1_g195410' => 'hma', 'Hma1.2p1_0893F.1_g233470' => 'hma', 'HPP92_006508' => 'vpl', 'HPP92_024780' => 'vpl', 'Hund02688' => 'sun', 'Hund09380' => 'sun', 'Hund09381' => 'sun', 'Hund09832' => 'sun', 'Hund09833' => 'sun', 'Hund11351' => 'sun', 'Hund11513' => 'sun', 'Lalb_Chr06g0162591' => 'lal', 'Lalb_Chr06g0162601' => 'lal', 'Lalb_Chr06g0169321' => 'lal', 'Lalb_Chr09g0330951' => 'lal', 'Lalb_Chr16g0387631' => 'lal', 'Lalb_Chr21g0306241' => 'lal', 'Lalb_Chr25g0290051' => 'lal', 'Lalb_Chr25g0290061' => 'lal', 'Lalb_Chr25g0290071' => 'lal', 'Lj1g0003876' => 'lja', 'Lj1P1207T36' => 'lonja', 'Lj2C1156G12' => 'lonja', 'Lj3A793G39' => 'lonja', 'Lj3C580G2' => 'lonja', 'Lj3C780G2' => 'lonja', 'Lj3C780T4' => 'lonja', 'Lj3C793G9' => 'lonja', 'Lj4g0012960' => 'lja', 'Lj5g0021252' => 'lja', 'Lj5g0021484' => 'lja', 'Lj5g0024528' => 'lja', 'Lj6A399T12' => 'lonja', 'Lj6A656G65' => 'lonja', 'Lsat_1_v5_gn_3_125500' => 'lsa', 'Lsat_1_v5_gn_3_125540' => 'lsa', 'Lsat_1_v5_gn_5_72701' => 'lsa', 'Lsat_1_v5_gn_8_91560' => 'lsa', 'Lsat_1_v5_gn_9_9640' => 'lsa', 'Manes.01G200600' => 'mes', 'Manes.01G200700' => 'mes', 'Manes.03G168900' => 'mes', 'Manes.03G169000' => 'mes', 'Manes.05G085801' => 'mes', 'Manes.05G086200' => 'mes', 'Manes.15G036700' => 'mes', 'Manes.15G036900' => 'mes', 'Mapoly0004s0172' => 'mpo', 'Mapoly0023s0001' => 'mpo', 'Mapoly0142s0012' => 'mpo', 'MBI01_g32854_MAGBIO' => 'mbi', 'MBI11_g24427_MAGBIO' => 'mbi', 'MBI11_g47319_MAGBIO' => 'mbi', 'MCO01G433' => 'mco', 'MD00G1187800' => 'mdo', 'MD04G1226500' => 'mdo', 'MD05G1203900' => 'mdo', 'MD10G1191100' => 'mdo', 'MD12G1243500' => 'mdo', 'MD13G1207000' => 'mdo', 'MD13G1207100' => 'mdo', 'MD16G1208600' => 'mdo', 'Medtr1g050352' => 'mtr', 'Medtr1g070385' => 'mtr', 'Medtr1g070450' => 'mtr', 'Medtr1g075200' => 'mtr', 'Medtr1g075250' => 'mtr', 'Medtr1g075260' => 'mtr', 'Medtr1g475250' => 'mtr', 'Medtr4g075450' => 'mtr', 'Medtr7g096300' => 'mtr', 'Medtr8g105110' => 'mtr', 'MELO3C006470.2' => 'cme', 'MELO3C006471.2' => 'cme', 'MELO3C020772.2' => 'cme', 'MELO3C026780.2' => 'cme', 'MELO3C026781.2' => 'cme', 'Migut.D00390' => 'egut', 'Migut.G00435' => 'egut', 'Migut.G00436' => 'egut', 'Migut.G00718' => 'egut', 'MSTRG.21891' => 'ama', 'MSTRG.26910' => 'ama', 'MSTRG.4099' => 'ama', 'MSTRG.9925' => 'ama', 'Nitab4.5_0000165g0010' => 'nta', 'Nitab4.5_0000209g0180' => 'nta', 'Nitab4.5_0000244g0440' => 'nta', 'Nitab4.5_0000525g0220' => 'nta', 'Nitab4.5_0001597g0020' => 'nta', 'Nitab4.5_0001878g0040' => 'nta', 'Nitab4.5_0001878g0060' => 'nta', 'Nitab4.5_0002838g0100' => 'nta', 'Nitab4.5_0002838g0120' => 'nta', 'Nitab4.5_0004798g0030' => 'nta', 'Nitab4.5_0005420g0010' => 'nta', 'Nitab4.5_0005507g0010' => 'nta', 'Nitab4.5_0005574g0020' => 'nta', 'Nitab4.5_0005838g0010' => 'nta', 'Nitab4.5_0010580g0020' => 'nta', 'Nn1g02599' => 'nnu', 'Nn1g02608' => 'nnu', 'Nn3g17742' => 'nnu', 'Nn3g19534' => 'nnu', 'Nn3g19535' => 'nnu', 'Oeu008790.1' => 'oeu', 'Oeu008792.1' => 'oeu', 'Oeu032590.1' => 'oeu', 'Oeu035349.1' => 'oeu', 'Oeu049791.1' => 'oeu', 'Os01g0774500' => 'osa', 'Os03g0628800' => 'osa', 'Os03g0798600' => 'osa', 'Os05g0508800' => 'osa', 'Peaxi162Scf00036g02018' => 'pax', 'Peaxi162Scf00578g00032' => 'pax', 'Peaxi162Scf00578g00317' => 'pax', 'Peaxi162Scf00785g00114' => 'pax', 'Peaxi162Scf00813g00119' => 'pax', 'Peaxi162Scf00906g00227' => 'pax', 'PGR004G0875' => 'pgr', 'PGR004G2424' => 'pgr', 'PGR031G1239' => 'pgr', 'PGR031G2474' => 'pgr', 'PGR044G0423' => 'pgr', 'PGSC0003DMG400001128' => 'stu', 'PGSC0003DMG400007336' => 'stu', 'PGSC0003DMG400016318' => 'stu', 'PGSC0003DMG400016319' => 'stu', 'PGSC0003DMG400018074' => 'stu', 'Phvul.001G157700' => 'pvu', 'Phvul.002G148550' => 'pvu', 'Phvul.002G320200' => 'pvu', 'Phvul.003G089200' => 'pvu', 'Phvul.007G126000' => 'pvu', 'Phvul.007G126100' => 'pvu', 'Phvul.007G178000' => 'pvu', 'Phvul.007G178200' => 'pvu', 'Potri.002G043000' => 'ptr', 'Potri.002G043200' => 'ptr', 'Potri.003G123750' => 'ptr', 'Potri.005G055401' => 'ptr', 'Potri.005G219700' => 'ptr', 'Potri.005G220000' => 'ptr', 'Potri.008G161901' => 'ptr', 'Potri.008G162000' => 'ptr', 'Potri.008G162400' => 'ptr', 'Potri.010G076900' => 'ptr', 'Pp3c12_9180' => 'ppa', 'Pp3c13_19770' => 'ppa', 'Pp3c14_22950' => 'ppa', 'Pp3c16_12160' => 'ppa', 'Pp3c27_7820' => 'ppa', 'Pp3c2_3490' => 'ppa', 'Pp3c3_23700' => 'ppa', 'Pp3c3_36520' => 'ppa', 'Pp3c4_15250' => 'ppa', 'PRCOL_00007002' => 'pco', 'Prupe.1G030600' => 'ppe', 'Prupe.1G030700' => 'ppe', 'Prupe.6G345200' => 'ppe', 'Prupe.8G230300' => 'ppe', 'Prupe.8G230500' => 'ppe', 'Psat3g059600' => 'psa', 'Psat5g200920' => 'psa', 'Psat6g056440' => 'psa', 'Psat6g057360' => 'psa', 'Psat6g134120' => 'psa', 'Psat6g134160' => 'psa', 'Psat7g008640' => 'psa', 'Psat7g185240' => 'psa', 'PSO017G1330' => 'pso', 'PSO063G6097' => 'pso', 'PSO170G0835' => 'pso', 'PSO170G2499' => 'pso', 'PSO210G5058' => 'pso', 'PSO210G6154' => 'pso', 'PSO585G0031' => 'pso', 'PSO832G0264' => 'pso', 'PSO832G4288' => 'pso', 'QL03p027355' => 'qlo', 'QL03p027430' => 'qlo', 'QL04p081380' => 'qlo', 'QL06p015642' => 'qlo', 'QL06p015650' => 'qlo', 'QL06p015686' => 'qlo', 'QL12p042927' => 'qlo', 'QL93p1863_0035' => 'qlo', 'RcHm_v2.0_Chr3g0450581' => 'rch', 'RcHm_v2.0_Chr4g0390371' => 'rch', 'RcHm_v2.0_Chr4g0390381' => 'rch', 'RcHm_v2.0_Chr4g0390491' => 'rch', 'RcHm_v2.0_Chr4g0390501' => 'rch', 'RcHm_v2.0_Chr6g0289231' => 'rch', 'Rhsim04G0190400' => 'rsi', 'Rhsim04G0190500' => 'rsi', 'Rhsim04G0190600' => 'rsi', 'Rhsim13G0031400' => 'rsi', 'Rhsim13G0165600' => 'rsi', 'RhsimUnG0114600' => 'rsi', 'RhsimUnG0114700' => 'rsi', 'Sabra02G0034800' => 'sbr', 'Sabra02G0035100' => 'sbr', 'Sabra05G0168600' => 'sbr', 'Sabra05G0168800' => 'sbr', 'Sabra08G0123700' => 'sbr', 'Sabra10G0031900' => 'sbr', 'Sabra13G0039000' => 'sbr', 'SalBow2G0782' => 'sbo', 'SalBow2G1403' => 'sbo', 'SalBow4G0074' => 'sbo', 'SalBow4G2635' => 'sbo', 'SalBow5G3010' => 'sbo', 'Sc05g0000870' => 'sci', 'Sc05g0000890' => 'sci', 'Sc13g0005000' => 'sci', 'Sc13g0005030' => 'sci', 'Sc19g0003790' => 'sci', 'Sc19g0003800' => 'sci', 'Sed0003467' => 'sed', 'Sed0009355' => 'sed', 'Sed0009894' => 'sed', 'Sed0011972' => 'sed', 'Sed0021483' => 'sed', 'Sed0021750' => 'sed', 'Sed0026279' => 'sed', 'SEGI_05312' => 'sgi', 'SEGI_10112' => 'sgi', 'SEGI_15835' => 'sgi', 'SEGI_30386' => 'sgi', 'SEGI_34122' => 'sgi', 'SEGI_35063' => 'sgi', 'SGA_v2.0_scaffold101G29794' => 'sas', 'SGA_v2.0_scaffold1G00573' => 'sas', 'SGA_v2.0_scaffold79G25637' => 'sas', 'SGA_v2.0_scaffold88G27283' => 'sas', 'SGA_v2.0_scaffold88G27285' => 'sas', 'SGA_v2.0_scaffold88G27331' => 'sas', 'SHI09937' => 'shi', 'SMO119G0302' => 'smo', 'SMO137G0231' => 'smo', 'SMO367G1151' => 'smo', 'Solyc02g082000.3' => 'sly', 'Solyc06g031670.3' => 'sly', 'Solyc06g053810.3' => 'sly', 'Solyc07g025457.1' => 'sly', 'Solyc08g059740.1' => 'sly', 'Solyc08g059750.3' => 'sly', 'Solyc09g083370.3' => 'sly', 'Solyc12g038950.3' => 'sly', 'Sopen02g026630' => 'spe', 'Sopen06g018930' => 'spe', 'Sopen06g018940' => 'spe', 'Sopen08g009460' => 'spe', 'Sopen09g032290' => 'spe', 'Sp1g03080' => 'spa', 'Sp1g03090' => 'spa', 'Sp1g05480' => 'spa', 'Sp2g07860' => 'spa', 'Sp2g08430' => 'spa', 'Sp2g08440' => 'spa', 'Sp2g26200' => 'spa', 'Sp4g13170' => 'spa', 'Sp6g33840' => 'spa', 'SpUn1204_0010' => 'spa', 'TAR365G0908' => 'tar', 'TAR381G1270' => 'tar', 'TAR381G1651' => 'tar', 'TAR625G1131' => 'tar', 'TAR633G0962' => 'tar', 'TAR633G1729' => 'tar', 'TAR633G1864' => 'tar', 'TAR636G0221' => 'tar', 'TAR636G0314' => 'tar', 'TAR636G3202' => 'tar', 'THA.LOC104800805' => 'tha', 'THA.LOC104801096' => 'tha', 'THA.LOC104801555' => 'tha', 'THA.LOC104808491' => 'tha', 'THA.LOC104808595' => 'tha', 'THA.LOC104815985' => 'tha', 'THA.LOC104822250' => 'tha', 'THA.LOC104826071' => 'tha', 'Thecc.01G265200' => 'tca', 'Thecc.01G265300' => 'tca', 'Thecc.01G265700' => 'tca', 'Thecc.03G109100' => 'tca', 'Thecc.04G245900' => 'tca', 'Thecc.04G246000' => 'tca', 'Thhalv10003334m.g' => 'esa', 'Thhalv10005508m.g' => 'esa', 'Thhalv10005643m.g' => 'esa', 'Thhalv10007316m.g' => 'esa', 'Thhalv10009006m.g' => 'esa', 'Thhalv10009309m.g' => 'esa', 'Thhalv10014917m.g' => 'esa', 'Thhalv10014919m.g' => 'esa', 'Thhalv10015393m.g' => 'esa', 'Thhalv10016515m.g' => 'esa', 'Thhalv10029242m.g' => 'esa', 'TPR.G16654' => 'tpr', 'TPR.G20589' => 'tpr', 'TPR.G23029' => 'tpr', 'TPR.G27731' => 'tpr', 'TPR.G28889' => 'tpr', 'TPR.G28899' => 'tpr', 'TPR.G30846' => 'tpr', 'TPR.G5452' => 'tpr', 'TPR.G5713' => 'tpr', 'TPR.G9046' => 'tpr', 'TPR.G9061' => 'tpr', 'TWI09G1075' => 'twi', 'TWI12G0806' => 'twi', 'TWI18G0108' => 'twi', 'TWI53G1361' => 'twi', 'TWI73G0185' => 'twi', 'TWI73G0427' => 'twi', 'unitig_37.g12001' => 'ugi', 'unitig_747.g21660' => 'ugi', 'unitig_748.g7232' => 'ugi', 'unitig_748.g7315' => 'ugi', 'unitig_85.g27262' => 'ugi', 'unitig_92.g28220' => 'ugi', 'vmacro02632' => 'vma', 'vmacro08410' => 'vma', 'vmacro08411' => 'vma', 'vmacro15407' => 'vma', 'VMungo0251G3619' => 'vmu', 'VMungo0720G1204' => 'vmu', 'VMungo0720G1918' => 'vmu', 'VMungo0720G2387' => 'vmu', 'VMungo0720G2961' => 'vmu', 'VMungo1215G2154' => 'vmu', 'VMungo1383G2411' => 'vmu', 'Zm00001eb051130' => 'zma', 'Zm00001eb116830' => 'zma', 'Zm00001eb116850' => 'zma', 'Zm00001eb151740' => 'zma', 'Zm00001eb292360' => 'zma', 'Zm00001eb301640' => 'zma' ), 'gf_id' => 'HOM05D000856', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000856' ), 'data_identifier' => 'HOM05D000856', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000856', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p00010' => 'bna', 'A03p04160' => 'bna', 'A03p17160' => 'bna', 'A04p23370' => 'bna', 'A05p14860' => 'bna', 'A08p37020' => 'bna', 'A09p08050' => 'bna', 'A09p66800' => 'bna', 'A09p67940' => 'bna', 'A10p02680' => 'bna', 'A10p05320' => 'bna', 'Aa31LG1G20560' => 'aar', 'Aa31LG1G20610' => 'aar', 'Aa31LG1G7810' => 'aar', 'Aa31LG5G3590' => 'aar', 'Aa31LG5G6140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3819' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4683' => 'aag', 'Actinidia04480' => 'ach', 'Actinidia05466' => 'ach', 'Actinidia08445' => 'ach', 'Actinidia21170' => 'ach', 'Actinidia24812' => 'ach', 'Actinidia24951' => 'ach', 'Actinidia40088' => 'ach', 'Ah.02g111660' => 'amhyb', 'Ah.11g048900' => 'amhyb', 'Ah.11g049910' => 'amhyb', 'AL1G13870' => 'aly', 'AL1G13880' => 'aly', 'AL1G16760' => 'aly', 'AL390U10020' => 'aly', 'AL4G25520' => 'aly', 'AL6G19890' => 'aly', 'AL6G19900' => 'aly', 'AL6G19910' => 'aly', 'AL8G40100' => 'aly', 'Aqoxy2G03562' => 'aox', 'Aqoxy5G00316' => 'aox', 'Aqoxy5G00926' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1628KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1H403S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2FU6SJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.882I6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8YRY2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YN1SN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AF70II' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZA8L1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F916KL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHRD8H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KTZ8QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S22EMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8M29T' => 'arhy', 'AT1G04270' => 'ath', 'AT1G04280' => 'ath', 'AT1G06750' => 'ath', 'AT1G33850' => 'ath', 'AT2G30630' => 'ath', 'AT5G09490' => 'ath', 'AT5G09500' => 'ath', 'AT5G09510' => 'ath', 'AT5G43640' => 'ath', 'AT5G63070' => 'ath', 'ATR0605G315' => 'atr', 'Atru.chr11.175' => 'acertr', 'Atru.chr11.653' => 'acertr', 'Atru.chr3.1616' => 'acertr', 'Atru.chr4.2230' => 'acertr', 'Atru.chr4.2232' => 'acertr', 'Atru.chr5.1598' => 'acertr', 'Atru.chr5.1600' => 'acertr', 'Atru.chr5.2188' => 'acertr', 'AUR62008326' => 'cqu', 'AUR62011922' => 'cqu', 'AUR62011924' => 'cqu', 'AUR62021771' => 'cqu', 'AUR62032237' => 'cqu', 'AUR62032240' => 'cqu', 'BcaB01g05572' => 'bca', 'BcaB02g10337' => 'bca', 'BcaB04g19944' => 'bca', 'BcaB05g21548' => 'bca', 'BcaB05g21549' => 'bca', 'BcaB05g23227' => 'bca', 'BcaB06g26256' => 'bca', 'BcaB06g26257' => 'bca', 'BcaB06g28379' => 'bca', 'BcaC02g11159' => 'bca', 'BcaC03g13258' => 'bca', 'BcaC03g13259' => 'bca', 'BcaC05g24456' => 'bca', 'BcaC05g24457' => 'bca', 'BcaC07g36922' => 'bca', 'BcaC07g36923' => 'bca', 'BcaC07g42050' => 'bca', 'BcaC07g42176' => 'bca', 'BcaC07g42195' => 'bca', 'BcaC07g42196' => 'bca', 'BcaNung06674' => 'bca', 'BolC2t06351H' => 'bol', 'BolC2t06352H' => 'bol', 'BolC3t12993H' => 'bol', 'BolC4t23525H' => 'bol', 'BolC4t27475H' => 'bol', 'BolC5t29025H' => 'bol', 'BolC5t29026H' => 'bol', 'BolC8t46898H' => 'bol', 'BolC8t46899H' => 'bol', 'BolC8t52630H' => 'bol', 'BolC8t52765H' => 'bol', 'BolC9t53824H' => 'bol', 'BraA03t09760Z' => 'bra', 'BraA03t10990Z' => 'bra', 'BraA05t20413Z' => 'bra', 'BraA08t35602Z' => 'bra', 'BraA09t36458Z' => 'bra', 'BraA09t42018Z' => 'bra', 'BraA09t42129Z' => 'bra', 'BraA10t42536Z' => 'bra', 'BraA10t42537Z' => 'bra', 'C01p10690' => 'bna', 'C02p03890' => 'bna', 'C02p03900' => 'bna', 'C03p04620' => 'bna', 'C04p19870' => 'bna', 'C04p59670' => 'bna', 'C05p02460' => 'bna', 'C05p02470' => 'bna', 'C08p00980' => 'bna', 'C08p00990' => 'bna', 'C08p51030' => 'bna', 'C08p52360' => 'bna', 'C09p09120' => 'bna', 'CAN.G19.15' => 'can', 'CAN.G251.10' => 'can', 'CAN.G251.9' => 'can', 'CAN.G398.24' => 'can', 'CAN.G410.32' => 'can', 'CAN.G881.2' => 'can', 'CANSAT01G3025' => 'cansat', 'CANSAT78G1211' => 'cansat', 'CANSAT78G1218' => 'cansat', 'CANSAT78G1521' => 'cansat', 'CANSAT78G1670' => 'cansat', 'CARHR003600' => 'chi', 'CARHR003610' => 'chi', 'CARHR006290' => 'chi', 'CARHR006430' => 'chi', 'CARHR124110' => 'chi', 'CARHR203870' => 'chi', 'CARHR203880' => 'chi', 'CARHR203890' => 'chi', 'CARHR276880' => 'chi', 'Carub.0001s0346' => 'cru', 'Carub.0001s0347' => 'cru', 'Carub.0001s0607' => 'cru', 'Carub.0003s2768' => 'cru', 'Carub.0003s2769' => 'cru', 'Carub.0004s1178' => 'cru', 'Carub.0006s0806' => 'cru', 'Carub.0006s0807' => 'cru', 'Carub.0006s0808' => 'cru', 'Carub.0008s0501' => 'cru', 'Carub.0008s2379' => 'cru', 'Ca_08655_v3' => 'car', 'Ca_08922_v3' => 'car', 'Ca_08923_v3' => 'car', 'Ca_09119_v3' => 'car', 'Ca_09703_v3' => 'car', 'Ca_09705_v3' => 'car', 'Ca_09835_v3' => 'car', 'Ca_26403_v3' => 'car', 'Ca_30719_v3' => 'car', 'CBR_g17958' => 'cbr', 'CBR_g40516' => 'cbr', 'Cc00_g05350' => 'ccan', 'Cc01_g18690' => 'ccan', 'Cc03_g04830' => 'ccan', 'Cc03_g04850' => 'ccan', 'CDE02G4469' => 'cde', 'CDE06G0883' => 'cde', 'CDE06G1295' => 'cde', 'CDE06G1390' => 'cde', 'CDE07G0584' => 'cde', 'CDE07G1084' => 'cde', 'CDE08G1259' => 'cde', 'Cfa002341' => 'cfa', 'Cfa024337' => 'cfa', 'Ciclev10004749m.g' => 'ccl', 'Ciclev10006127m.g' => 'ccl', 'Ciclev10019720m.g' => 'ccl', 'Ciclev10022652m.g' => 'ccl', 'CiPaw.01G190400' => 'cil', 'CiPaw.01G190500' => 'cil', 'CiPaw.02G116400' => 'cil', 'CiPaw.02G116500' => 'cil', 'CiPaw.04G183000' => 'cil', 'CiPaw.04G183300' => 'cil', 'ClCG05G004610' => 'cla', 'ClCG05G004620' => 'cla', 'ClCG06G006730' => 'cla', 'ClCG06G006740' => 'cla', 'ClCG11G003690' => 'cla', 'COL.COLO4_08276' => 'col', 'COL.COLO4_08277' => 'col', 'COL.COLO4_15787' => 'col', 'COL.COLO4_15789' => 'col', 'Cpa.g.c44815' => 'cpa', 'Cpa.g.sc52.144' => 'cpa', 'Cpa.g.sc58.46' => 'cpa', 'Cpa.g.sc58.47' => 'cpa', 'Cre08.g360900' => 'cre', 'CsaV3_2G013030' => 'csa', 'CsaV3_2G013050' => 'csa', 'CsaV3_2G015620' => 'csa', 'CsaV3_3G012590' => 'csa', 'CsaV3_3G012600' => 'csa', 'CSS0001641' => 'camsi', 'CSS0008310' => 'camsi', 'CSS0013011' => 'camsi', 'CSS0017147' => 'camsi', 'CSS0022970' => 'camsi', 'CSS0025655' => 'camsi', 'CSS0028665' => 'camsi', 'CSS0029117' => 'camsi', 'CSS0032024' => 'camsi', 'CSS0039681' => 'camsi', 'CSS0046516' => 'camsi', 'CSS0050307' => 'camsi', 'DCAR_005871' => 'dca', 'DCAR_007342' => 'dca', 'DCAR_024228' => 'dca', 'DCAR_027277' => 'dca', 'DCAR_030718' => 'dca', 'Dinv20287' => 'din', 'Dinv22461' => 'din', 'Dinv22464' => 'din', 'Dinv29912' => 'din', 'Dinv29913' => 'din', 'Dinv34580' => 'din', 'Dinv34582' => 'din', 'Dinv44632' => 'din', 'Duzib052G0266' => 'dzi', 'Duzib133G0907' => 'dzi', 'Duzib133G1034' => 'dzi', 'Duzib138G0207' => 'dzi', 'Duzib138G0491' => 'dzi', 'Duzib151G0812' => 'dzi', 'Duzib151G1166' => 'dzi', 'Duzib168G0192' => 'dzi', 'Duzib211G0077' => 'dzi', 'Duzib212G0429' => 'dzi', 'Duzib212G0472' => 'dzi', 'ECA233G2617' => 'eca', 'ECA236G4188' => 'eca', 'ECA240G0936' => 'eca', 'ECA240G1129' => 'eca', 'ECA247G0623' => 'eca', 'EL10Ac5g10451' => 'bvu', 'EL10Ac5g10453' => 'bvu', 'EL10Ac5g10894' => 'bvu', 'Eucgr.H00192' => 'egr', 'Eucgr.H00193' => 'egr', 'Eucgr.H00194' => 'egr', 'Eucgr.J01562' => 'egr', 'Eucgr.K03301' => 'egr', 'FAN02G0632' => 'fan', 'FAN05G5378' => 'fan', 'FAN09G3247' => 'fan', 'FAN12G0435' => 'fan', 'FAN12G2426' => 'fan', 'FAN14G1707' => 'fan', 'FAN14G4725' => 'fan', 'FAN15G2071' => 'fan', 'FAN17G3065' => 'fan', 'FAN19G1376' => 'fan', 'FAN20G0354' => 'fan', 'FAN20G2429' => 'fan', 'FAN20G2658' => 'fan', 'FAN24G2343' => 'fan', 'FAN27G2362' => 'fan', 'FAN28G1765' => 'fan', 'FvH4_1g16020' => 'fve', 'FvH4_2g04890' => 'fve', 'FvH4_2g22270' => 'fve', 'FvH4_4g02630' => 'fve', 'FvH4_4g02640' => 'fve', 'FvH4_6g02650' => 'fve', 'Glyma.02G140600' => 'gma', 'Glyma.03G159900' => 'gma', 'Glyma.05G234800' => 'gma', 'Glyma.07G269600' => 'gma', 'Glyma.08G042300' => 'gma', 'Glyma.10G033500' => 'gma', 'Glyma.10G185200' => 'gma', 'Glyma.17G004300' => 'gma', 'Glyma.19G161900' => 'gma', 'Glyma.20G205100' => 'gma', 'Glyma.20G205200' => 'gma', 'Gohir.A01G139101' => 'ghi', 'Gohir.A02G035600' => 'ghi', 'Gohir.A02G117901' => 'ghi', 'Gohir.A07G210100' => 'ghi', 'Gohir.A07G210200' => 'ghi', 'Gohir.A08G061100' => 'ghi', 'Gohir.A09G223000' => 'ghi', 'Gohir.A09G223100' => 'ghi', 'Gohir.A10G113900' => 'ghi', 'Gohir.A10G114000' => 'ghi', 'Gohir.D02G042300' => 'ghi', 'Gohir.D07G216100' => 'ghi', 'Gohir.D07G216200' => 'ghi', 'Gohir.D08G070400' => 'ghi', 'Gohir.D09G225000' => 'ghi', 'Gohir.D09G225100' => 'ghi', 'Gohir.D10G152300' => 'ghi', 'Gohir.D10G153200' => 'ghi', 'Gohir.D11G133701' => 'ghi', 'Gorai.004G074100' => 'gra', 'Gorai.005G046800' => 'gra', 'Gorai.006G246500' => 'gra', 'Gorai.006G246600' => 'gra', 'Gorai.007G142900' => 'gra', 'Gorai.011G171000' => 'gra', 'Gorai.011G171100' => 'gra', 'Gorai.013G104300' => 'gra', 'Gorai.013G104400' => 'gra', 'GSVIVG01000754001' => 'vvi', 'GSVIVG01000756001' => 'vvi', 'GSVIVG01010903001' => 'vvi', 'GSVIVG01017623001' => 'vvi', 'GSVIVG01018113001' => 'vvi', 'GSVIVG01018116001' => 'vvi', 'GSVIVG01018118001' => 'vvi', 'HanXRQChr03g0076211' => 'han', 'HanXRQChr03g0092431' => 'han', 'HanXRQChr03g0092441' => 'han', 'HanXRQChr03g0092591' => 'han', 'HanXRQChr03g0092671' => 'han', 'HanXRQChr03g0092681' => 'han', 'HanXRQChr03g0092691' => 'han', 'HanXRQChr03g0092701' => 'han', 'HanXRQChr03g0092721' => 'han', 'HanXRQChr03g0092731' => 'han', 'HanXRQChr04g0113681' => 'han', 'HanXRQChr10g0281371' => 'han', 'HanXRQChr11g0337141' => 'han', 'HanXRQChr13g0424521' => 'han', 'HanXRQChr13g0424531' => 'han', 'HanXRQChr13g0424541' => 'han', 'HanXRQChr16g0498221' => 'han', 'Haze_04377' => 'cav', 'Haze_11298' => 'cav', 'Haze_24547' => 'cav', 'Haze_24550' => 'cav', 'Haze_26587' => 'cav', 'Hma1.2p1_0650F.1_g195410' => 'hma', 'Hma1.2p1_0893F.1_g233470' => 'hma', 'HPP92_006508' => 'vpl', 'HPP92_024780' => 'vpl', 'Hund02688' => 'sun', 'Hund09380' => 'sun', 'Hund09381' => 'sun', 'Hund09832' => 'sun', 'Hund09833' => 'sun', 'Hund11351' => 'sun', 'Hund11513' => 'sun', 'Lalb_Chr06g0162591' => 'lal', 'Lalb_Chr06g0162601' => 'lal', 'Lalb_Chr06g0169321' => 'lal', 'Lalb_Chr09g0330951' => 'lal', 'Lalb_Chr16g0387631' => 'lal', 'Lalb_Chr21g0306241' => 'lal', 'Lalb_Chr25g0290051' => 'lal', 'Lalb_Chr25g0290061' => 'lal', 'Lalb_Chr25g0290071' => 'lal', 'Lj1g0003876' => 'lja', 'Lj1P1207T36' => 'lonja', 'Lj2C1156G12' => 'lonja', 'Lj3A793G39' => 'lonja', 'Lj3C580G2' => 'lonja', 'Lj3C780G2' => 'lonja', 'Lj3C780T4' => 'lonja', 'Lj3C793G9' => 'lonja', 'Lj4g0012960' => 'lja', 'Lj5g0021252' => 'lja', 'Lj5g0021484' => 'lja', 'Lj5g0024528' => 'lja', 'Lj6A399T12' => 'lonja', 'Lj6A656G65' => 'lonja', 'Lsat_1_v5_gn_3_125500' => 'lsa', 'Lsat_1_v5_gn_3_125540' => 'lsa', 'Lsat_1_v5_gn_5_72701' => 'lsa', 'Lsat_1_v5_gn_8_91560' => 'lsa', 'Lsat_1_v5_gn_9_9640' => 'lsa', 'Manes.01G200600' => 'mes', 'Manes.01G200700' => 'mes', 'Manes.03G168900' => 'mes', 'Manes.03G169000' => 'mes', 'Manes.05G085801' => 'mes', 'Manes.05G086200' => 'mes', 'Manes.15G036700' => 'mes', 'Manes.15G036900' => 'mes', 'Mapoly0004s0172' => 'mpo', 'Mapoly0023s0001' => 'mpo', 'Mapoly0142s0012' => 'mpo', 'MBI01_g32854_MAGBIO' => 'mbi', 'MBI11_g24427_MAGBIO' => 'mbi', 'MBI11_g47319_MAGBIO' => 'mbi', 'MCO01G433' => 'mco', 'MD00G1187800' => 'mdo', 'MD04G1226500' => 'mdo', 'MD05G1203900' => 'mdo', 'MD10G1191100' => 'mdo', 'MD12G1243500' => 'mdo', 'MD13G1207000' => 'mdo', 'MD13G1207100' => 'mdo', 'MD16G1208600' => 'mdo', 'Medtr1g050352' => 'mtr', 'Medtr1g070385' => 'mtr', 'Medtr1g070450' => 'mtr', 'Medtr1g075200' => 'mtr', 'Medtr1g075250' => 'mtr', 'Medtr1g075260' => 'mtr', 'Medtr1g475250' => 'mtr', 'Medtr4g075450' => 'mtr', 'Medtr7g096300' => 'mtr', 'Medtr8g105110' => 'mtr', 'MELO3C006470.2' => 'cme', 'MELO3C006471.2' => 'cme', 'MELO3C020772.2' => 'cme', 'MELO3C026780.2' => 'cme', 'MELO3C026781.2' => 'cme', 'Migut.D00390' => 'egut', 'Migut.G00435' => 'egut', 'Migut.G00436' => 'egut', 'Migut.G00718' => 'egut', 'MSTRG.21891' => 'ama', 'MSTRG.26910' => 'ama', 'MSTRG.4099' => 'ama', 'MSTRG.9925' => 'ama', 'Nitab4.5_0000165g0010' => 'nta', 'Nitab4.5_0000209g0180' => 'nta', 'Nitab4.5_0000244g0440' => 'nta', 'Nitab4.5_0000525g0220' => 'nta', 'Nitab4.5_0001597g0020' => 'nta', 'Nitab4.5_0001878g0040' => 'nta', 'Nitab4.5_0001878g0060' => 'nta', 'Nitab4.5_0002838g0100' => 'nta', 'Nitab4.5_0002838g0120' => 'nta', 'Nitab4.5_0004798g0030' => 'nta', 'Nitab4.5_0005420g0010' => 'nta', 'Nitab4.5_0005507g0010' => 'nta', 'Nitab4.5_0005574g0020' => 'nta', 'Nitab4.5_0005838g0010' => 'nta', 'Nitab4.5_0010580g0020' => 'nta', 'Nn1g02599' => 'nnu', 'Nn1g02608' => 'nnu', 'Nn3g17742' => 'nnu', 'Nn3g19534' => 'nnu', 'Nn3g19535' => 'nnu', 'Oeu008790.1' => 'oeu', 'Oeu008792.1' => 'oeu', 'Oeu032590.1' => 'oeu', 'Oeu035349.1' => 'oeu', 'Oeu049791.1' => 'oeu', 'Os01g0774500' => 'osa', 'Os03g0628800' => 'osa', 'Os03g0798600' => 'osa', 'Os05g0508800' => 'osa', 'Peaxi162Scf00036g02018' => 'pax', 'Peaxi162Scf00578g00032' => 'pax', 'Peaxi162Scf00578g00317' => 'pax', 'Peaxi162Scf00785g00114' => 'pax', 'Peaxi162Scf00813g00119' => 'pax', 'Peaxi162Scf00906g00227' => 'pax', 'PGR004G0875' => 'pgr', 'PGR004G2424' => 'pgr', 'PGR031G1239' => 'pgr', 'PGR031G2474' => 'pgr', 'PGR044G0423' => 'pgr', 'PGSC0003DMG400001128' => 'stu', 'PGSC0003DMG400007336' => 'stu', 'PGSC0003DMG400016318' => 'stu', 'PGSC0003DMG400016319' => 'stu', 'PGSC0003DMG400018074' => 'stu', 'Phvul.001G157700' => 'pvu', 'Phvul.002G148550' => 'pvu', 'Phvul.002G320200' => 'pvu', 'Phvul.003G089200' => 'pvu', 'Phvul.007G126000' => 'pvu', 'Phvul.007G126100' => 'pvu', 'Phvul.007G178000' => 'pvu', 'Phvul.007G178200' => 'pvu', 'Potri.002G043000' => 'ptr', 'Potri.002G043200' => 'ptr', 'Potri.003G123750' => 'ptr', 'Potri.005G055401' => 'ptr', 'Potri.005G219700' => 'ptr', 'Potri.005G220000' => 'ptr', 'Potri.008G161901' => 'ptr', 'Potri.008G162000' => 'ptr', 'Potri.008G162400' => 'ptr', 'Potri.010G076900' => 'ptr', 'Pp3c12_9180' => 'ppa', 'Pp3c13_19770' => 'ppa', 'Pp3c14_22950' => 'ppa', 'Pp3c16_12160' => 'ppa', 'Pp3c27_7820' => 'ppa', 'Pp3c2_3490' => 'ppa', 'Pp3c3_23700' => 'ppa', 'Pp3c3_36520' => 'ppa', 'Pp3c4_15250' => 'ppa', 'PRCOL_00007002' => 'pco', 'Prupe.1G030600' => 'ppe', 'Prupe.1G030700' => 'ppe', 'Prupe.6G345200' => 'ppe', 'Prupe.8G230300' => 'ppe', 'Prupe.8G230500' => 'ppe', 'Psat3g059600' => 'psa', 'Psat5g200920' => 'psa', 'Psat6g056440' => 'psa', 'Psat6g057360' => 'psa', 'Psat6g134120' => 'psa', 'Psat6g134160' => 'psa', 'Psat7g008640' => 'psa', 'Psat7g185240' => 'psa', 'PSO017G1330' => 'pso', 'PSO063G6097' => 'pso', 'PSO170G0835' => 'pso', 'PSO170G2499' => 'pso', 'PSO210G5058' => 'pso', 'PSO210G6154' => 'pso', 'PSO585G0031' => 'pso', 'PSO832G0264' => 'pso', 'PSO832G4288' => 'pso', 'QL03p027355' => 'qlo', 'QL03p027430' => 'qlo', 'QL04p081380' => 'qlo', 'QL06p015642' => 'qlo', 'QL06p015650' => 'qlo', 'QL06p015686' => 'qlo', 'QL12p042927' => 'qlo', 'QL93p1863_0035' => 'qlo', 'RcHm_v2.0_Chr3g0450581' => 'rch', 'RcHm_v2.0_Chr4g0390371' => 'rch', 'RcHm_v2.0_Chr4g0390381' => 'rch', 'RcHm_v2.0_Chr4g0390491' => 'rch', 'RcHm_v2.0_Chr4g0390501' => 'rch', 'RcHm_v2.0_Chr6g0289231' => 'rch', 'Rhsim04G0190400' => 'rsi', 'Rhsim04G0190500' => 'rsi', 'Rhsim04G0190600' => 'rsi', 'Rhsim13G0031400' => 'rsi', 'Rhsim13G0165600' => 'rsi', 'RhsimUnG0114600' => 'rsi', 'RhsimUnG0114700' => 'rsi', 'Sabra02G0034800' => 'sbr', 'Sabra02G0035100' => 'sbr', 'Sabra05G0168600' => 'sbr', 'Sabra05G0168800' => 'sbr', 'Sabra08G0123700' => 'sbr', 'Sabra10G0031900' => 'sbr', 'Sabra13G0039000' => 'sbr', 'SalBow2G0782' => 'sbo', 'SalBow2G1403' => 'sbo', 'SalBow4G0074' => 'sbo', 'SalBow4G2635' => 'sbo', 'SalBow5G3010' => 'sbo', 'Sc05g0000870' => 'sci', 'Sc05g0000890' => 'sci', 'Sc13g0005000' => 'sci', 'Sc13g0005030' => 'sci', 'Sc19g0003790' => 'sci', 'Sc19g0003800' => 'sci', 'Sed0003467' => 'sed', 'Sed0009355' => 'sed', 'Sed0009894' => 'sed', 'Sed0011972' => 'sed', 'Sed0021483' => 'sed', 'Sed0021750' => 'sed', 'Sed0026279' => 'sed', 'SEGI_05312' => 'sgi', 'SEGI_10112' => 'sgi', 'SEGI_15835' => 'sgi', 'SEGI_30386' => 'sgi', 'SEGI_34122' => 'sgi', 'SEGI_35063' => 'sgi', 'SGA_v2.0_scaffold101G29794' => 'sas', 'SGA_v2.0_scaffold1G00573' => 'sas', 'SGA_v2.0_scaffold79G25637' => 'sas', 'SGA_v2.0_scaffold88G27283' => 'sas', 'SGA_v2.0_scaffold88G27285' => 'sas', 'SGA_v2.0_scaffold88G27331' => 'sas', 'SHI09937' => 'shi', 'SMO119G0302' => 'smo', 'SMO137G0231' => 'smo', 'SMO367G1151' => 'smo', 'Solyc02g082000.3' => 'sly', 'Solyc06g031670.3' => 'sly', 'Solyc06g053810.3' => 'sly', 'Solyc07g025457.1' => 'sly', 'Solyc08g059740.1' => 'sly', 'Solyc08g059750.3' => 'sly', 'Solyc09g083370.3' => 'sly', 'Solyc12g038950.3' => 'sly', 'Sopen02g026630' => 'spe', 'Sopen06g018930' => 'spe', 'Sopen06g018940' => 'spe', 'Sopen08g009460' => 'spe', 'Sopen09g032290' => 'spe', 'Sp1g03080' => 'spa', 'Sp1g03090' => 'spa', 'Sp1g05480' => 'spa', 'Sp2g07860' => 'spa', 'Sp2g08430' => 'spa', 'Sp2g08440' => 'spa', 'Sp2g26200' => 'spa', 'Sp4g13170' => 'spa', 'Sp6g33840' => 'spa', 'SpUn1204_0010' => 'spa', 'TAR365G0908' => 'tar', 'TAR381G1270' => 'tar', 'TAR381G1651' => 'tar', 'TAR625G1131' => 'tar', 'TAR633G0962' => 'tar', 'TAR633G1729' => 'tar', 'TAR633G1864' => 'tar', 'TAR636G0221' => 'tar', 'TAR636G0314' => 'tar', 'TAR636G3202' => 'tar', 'THA.LOC104800805' => 'tha', 'THA.LOC104801096' => 'tha', 'THA.LOC104801555' => 'tha', 'THA.LOC104808491' => 'tha', 'THA.LOC104808595' => 'tha', 'THA.LOC104815985' => 'tha', 'THA.LOC104822250' => 'tha', 'THA.LOC104826071' => 'tha', 'Thecc.01G265200' => 'tca', 'Thecc.01G265300' => 'tca', 'Thecc.01G265700' => 'tca', 'Thecc.03G109100' => 'tca', 'Thecc.04G245900' => 'tca', 'Thecc.04G246000' => 'tca', 'Thhalv10003334m.g' => 'esa', 'Thhalv10005508m.g' => 'esa', 'Thhalv10005643m.g' => 'esa', 'Thhalv10007316m.g' => 'esa', 'Thhalv10009006m.g' => 'esa', 'Thhalv10009309m.g' => 'esa', 'Thhalv10014917m.g' => 'esa', 'Thhalv10014919m.g' => 'esa', 'Thhalv10015393m.g' => 'esa', 'Thhalv10016515m.g' => 'esa', 'Thhalv10029242m.g' => 'esa', 'TPR.G16654' => 'tpr', 'TPR.G20589' => 'tpr', 'TPR.G23029' => 'tpr', 'TPR.G27731' => 'tpr', 'TPR.G28889' => 'tpr', 'TPR.G28899' => 'tpr', 'TPR.G30846' => 'tpr', 'TPR.G5452' => 'tpr', 'TPR.G5713' => 'tpr', 'TPR.G9046' => 'tpr', 'TPR.G9061' => 'tpr', 'TWI09G1075' => 'twi', 'TWI12G0806' => 'twi', 'TWI18G0108' => 'twi', 'TWI53G1361' => 'twi', 'TWI73G0185' => 'twi', 'TWI73G0427' => 'twi', 'unitig_37.g12001' => 'ugi', 'unitig_747.g21660' => 'ugi', 'unitig_748.g7232' => 'ugi', 'unitig_748.g7315' => 'ugi', 'unitig_85.g27262' => 'ugi', 'unitig_92.g28220' => 'ugi', 'vmacro02632' => 'vma', 'vmacro08410' => 'vma', 'vmacro08411' => 'vma', 'vmacro15407' => 'vma', 'VMungo0251G3619' => 'vmu', 'VMungo0720G1204' => 'vmu', 'VMungo0720G1918' => 'vmu', 'VMungo0720G2387' => 'vmu', 'VMungo0720G2961' => 'vmu', 'VMungo1215G2154' => 'vmu', 'VMungo1383G2411' => 'vmu', 'Zm00001eb051130' => 'zma', 'Zm00001eb116830' => 'zma', 'Zm00001eb116850' => 'zma', 'Zm00001eb151740' => 'zma', 'Zm00001eb292360' => 'zma', 'Zm00001eb301640' => 'zma' ) $gf_id = 'HOM05D000856' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000856' ) $data_identifier = 'HOM05D000856' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 13, 'ath' => (int) 10, 'atr' => (int) 1, 'acertr' => (int) 8, 'cqu' => (int) 6, 'bca' => (int) 21, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 11, 'car' => (int) 9, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 8, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 5, 'fan' => (int) 16, 'fve' => (int) 6, 'gma' => (int) 11, 'ghi' => (int) 19, 'gra' => (int) 9, 'vvi' => (int) 7, 'han' => (int) 17, 'cav' => (int) 5, 'hma' => (int) 2, 'vpl' => (int) 2, 'sun' => (int) 7, 'lal' => (int) 9, 'lja' => (int) 5, 'lonja' => (int) 9, 'lsa' => (int) 5, 'mes' => (int) 8, 'mpo' => (int) 3, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 10, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 15, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 9, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 9, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 6, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 5, 'spa' => (int) 10, 'tar' => (int) 10, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 11, 'tpr' => (int) 11, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 4, 'vmu' => (int) 7, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb301640' $species_info = array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ) $local_species = 'han' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000856', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p00010' => 'bna', 'A03p04160' => 'bna', 'A03p17160' => 'bna', 'A04p23370' => 'bna', 'A05p14860' => 'bna', 'A08p37020' => 'bna', 'A09p08050' => 'bna', 'A09p66800' => 'bna', 'A09p67940' => 'bna', 'A10p02680' => 'bna', 'A10p05320' => 'bna', 'Aa31LG1G20560' => 'aar', 'Aa31LG1G20610' => 'aar', 'Aa31LG1G7810' => 'aar', 'Aa31LG5G3590' => 'aar', 'Aa31LG5G6140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3819' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4683' => 'aag', 'Actinidia04480' => 'ach', 'Actinidia05466' => 'ach', 'Actinidia08445' => 'ach', 'Actinidia21170' => 'ach', 'Actinidia24812' => 'ach', 'Actinidia24951' => 'ach', 'Actinidia40088' => 'ach', 'Ah.02g111660' => 'amhyb', 'Ah.11g048900' => 'amhyb', 'Ah.11g049910' => 'amhyb', 'AL1G13870' => 'aly', 'AL1G13880' => 'aly', 'AL1G16760' => 'aly', 'AL390U10020' => 'aly', 'AL4G25520' => 'aly', 'AL6G19890' => 'aly', 'AL6G19900' => 'aly', 'AL6G19910' => 'aly', 'AL8G40100' => 'aly', 'Aqoxy2G03562' => 'aox', 'Aqoxy5G00316' => 'aox', 'Aqoxy5G00926' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1628KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1H403S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2FU6SJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.882I6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8YRY2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YN1SN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AF70II' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZA8L1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F916KL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHRD8H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KTZ8QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S22EMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8M29T' => 'arhy', 'AT1G04270' => 'ath', 'AT1G04280' => 'ath', 'AT1G06750' => 'ath', 'AT1G33850' => 'ath', 'AT2G30630' => 'ath', 'AT5G09490' => 'ath', 'AT5G09500' => 'ath', 'AT5G09510' => 'ath', 'AT5G43640' => 'ath', 'AT5G63070' => 'ath', 'ATR0605G315' => 'atr', 'Atru.chr11.175' => 'acertr', 'Atru.chr11.653' => 'acertr', 'Atru.chr3.1616' => 'acertr', 'Atru.chr4.2230' => 'acertr', 'Atru.chr4.2232' => 'acertr', 'Atru.chr5.1598' => 'acertr', 'Atru.chr5.1600' => 'acertr', 'Atru.chr5.2188' => 'acertr', 'AUR62008326' => 'cqu', 'AUR62011922' => 'cqu', 'AUR62011924' => 'cqu', 'AUR62021771' => 'cqu', 'AUR62032237' => 'cqu', 'AUR62032240' => 'cqu', 'BcaB01g05572' => 'bca', 'BcaB02g10337' => 'bca', 'BcaB04g19944' => 'bca', 'BcaB05g21548' => 'bca', 'BcaB05g21549' => 'bca', 'BcaB05g23227' => 'bca', 'BcaB06g26256' => 'bca', 'BcaB06g26257' => 'bca', 'BcaB06g28379' => 'bca', 'BcaC02g11159' => 'bca', 'BcaC03g13258' => 'bca', 'BcaC03g13259' => 'bca', 'BcaC05g24456' => 'bca', 'BcaC05g24457' => 'bca', 'BcaC07g36922' => 'bca', 'BcaC07g36923' => 'bca', 'BcaC07g42050' => 'bca', 'BcaC07g42176' => 'bca', 'BcaC07g42195' => 'bca', 'BcaC07g42196' => 'bca', 'BcaNung06674' => 'bca', 'BolC2t06351H' => 'bol', 'BolC2t06352H' => 'bol', 'BolC3t12993H' => 'bol', 'BolC4t23525H' => 'bol', 'BolC4t27475H' => 'bol', 'BolC5t29025H' => 'bol', 'BolC5t29026H' => 'bol', 'BolC8t46898H' => 'bol', 'BolC8t46899H' => 'bol', 'BolC8t52630H' => 'bol', 'BolC8t52765H' => 'bol', 'BolC9t53824H' => 'bol', 'BraA03t09760Z' => 'bra', 'BraA03t10990Z' => 'bra', 'BraA05t20413Z' => 'bra', 'BraA08t35602Z' => 'bra', 'BraA09t36458Z' => 'bra', 'BraA09t42018Z' => 'bra', 'BraA09t42129Z' => 'bra', 'BraA10t42536Z' => 'bra', 'BraA10t42537Z' => 'bra', 'C01p10690' => 'bna', 'C02p03890' => 'bna', 'C02p03900' => 'bna', 'C03p04620' => 'bna', 'C04p19870' => 'bna', 'C04p59670' => 'bna', 'C05p02460' => 'bna', 'C05p02470' => 'bna', 'C08p00980' => 'bna', 'C08p00990' => 'bna', 'C08p51030' => 'bna', 'C08p52360' => 'bna', 'C09p09120' => 'bna', 'CAN.G19.15' => 'can', 'CAN.G251.10' => 'can', 'CAN.G251.9' => 'can', 'CAN.G398.24' => 'can', 'CAN.G410.32' => 'can', 'CAN.G881.2' => 'can', 'CANSAT01G3025' => 'cansat', 'CANSAT78G1211' => 'cansat', 'CANSAT78G1218' => 'cansat', 'CANSAT78G1521' => 'cansat', 'CANSAT78G1670' => 'cansat', 'CARHR003600' => 'chi', 'CARHR003610' => 'chi', 'CARHR006290' => 'chi', 'CARHR006430' => 'chi', 'CARHR124110' => 'chi', 'CARHR203870' => 'chi', 'CARHR203880' => 'chi', 'CARHR203890' => 'chi', 'CARHR276880' => 'chi', 'Carub.0001s0346' => 'cru', 'Carub.0001s0347' => 'cru', 'Carub.0001s0607' => 'cru', 'Carub.0003s2768' => 'cru', 'Carub.0003s2769' => 'cru', 'Carub.0004s1178' => 'cru', 'Carub.0006s0806' => 'cru', 'Carub.0006s0807' => 'cru', 'Carub.0006s0808' => 'cru', 'Carub.0008s0501' => 'cru', 'Carub.0008s2379' => 'cru', 'Ca_08655_v3' => 'car', 'Ca_08922_v3' => 'car', 'Ca_08923_v3' => 'car', 'Ca_09119_v3' => 'car', 'Ca_09703_v3' => 'car', 'Ca_09705_v3' => 'car', 'Ca_09835_v3' => 'car', 'Ca_26403_v3' => 'car', 'Ca_30719_v3' => 'car', 'CBR_g17958' => 'cbr', 'CBR_g40516' => 'cbr', 'Cc00_g05350' => 'ccan', 'Cc01_g18690' => 'ccan', 'Cc03_g04830' => 'ccan', 'Cc03_g04850' => 'ccan', 'CDE02G4469' => 'cde', 'CDE06G0883' => 'cde', 'CDE06G1295' => 'cde', 'CDE06G1390' => 'cde', 'CDE07G0584' => 'cde', 'CDE07G1084' => 'cde', 'CDE08G1259' => 'cde', 'Cfa002341' => 'cfa', 'Cfa024337' => 'cfa', 'Ciclev10004749m.g' => 'ccl', 'Ciclev10006127m.g' => 'ccl', 'Ciclev10019720m.g' => 'ccl', 'Ciclev10022652m.g' => 'ccl', 'CiPaw.01G190400' => 'cil', 'CiPaw.01G190500' => 'cil', 'CiPaw.02G116400' => 'cil', 'CiPaw.02G116500' => 'cil', 'CiPaw.04G183000' => 'cil', 'CiPaw.04G183300' => 'cil', 'ClCG05G004610' => 'cla', 'ClCG05G004620' => 'cla', 'ClCG06G006730' => 'cla', 'ClCG06G006740' => 'cla', 'ClCG11G003690' => 'cla', 'COL.COLO4_08276' => 'col', 'COL.COLO4_08277' => 'col', 'COL.COLO4_15787' => 'col', 'COL.COLO4_15789' => 'col', 'Cpa.g.c44815' => 'cpa', 'Cpa.g.sc52.144' => 'cpa', 'Cpa.g.sc58.46' => 'cpa', 'Cpa.g.sc58.47' => 'cpa', 'Cre08.g360900' => 'cre', 'CsaV3_2G013030' => 'csa', 'CsaV3_2G013050' => 'csa', 'CsaV3_2G015620' => 'csa', 'CsaV3_3G012590' => 'csa', 'CsaV3_3G012600' => 'csa', 'CSS0001641' => 'camsi', 'CSS0008310' => 'camsi', 'CSS0013011' => 'camsi', 'CSS0017147' => 'camsi', 'CSS0022970' => 'camsi', 'CSS0025655' => 'camsi', 'CSS0028665' => 'camsi', 'CSS0029117' => 'camsi', 'CSS0032024' => 'camsi', 'CSS0039681' => 'camsi', 'CSS0046516' => 'camsi', 'CSS0050307' => 'camsi', 'DCAR_005871' => 'dca', 'DCAR_007342' => 'dca', 'DCAR_024228' => 'dca', 'DCAR_027277' => 'dca', 'DCAR_030718' => 'dca', 'Dinv20287' => 'din', 'Dinv22461' => 'din', 'Dinv22464' => 'din', 'Dinv29912' => 'din', 'Dinv29913' => 'din', 'Dinv34580' => 'din', 'Dinv34582' => 'din', 'Dinv44632' => 'din', 'Duzib052G0266' => 'dzi', 'Duzib133G0907' => 'dzi', 'Duzib133G1034' => 'dzi', 'Duzib138G0207' => 'dzi', 'Duzib138G0491' => 'dzi', 'Duzib151G0812' => 'dzi', 'Duzib151G1166' => 'dzi', 'Duzib168G0192' => 'dzi', 'Duzib211G0077' => 'dzi', 'Duzib212G0429' => 'dzi', 'Duzib212G0472' => 'dzi', 'ECA233G2617' => 'eca', 'ECA236G4188' => 'eca', 'ECA240G0936' => 'eca', 'ECA240G1129' => 'eca', 'ECA247G0623' => 'eca', 'EL10Ac5g10451' => 'bvu', 'EL10Ac5g10453' => 'bvu', 'EL10Ac5g10894' => 'bvu', 'Eucgr.H00192' => 'egr', 'Eucgr.H00193' => 'egr', 'Eucgr.H00194' => 'egr', 'Eucgr.J01562' => 'egr', 'Eucgr.K03301' => 'egr', 'FAN02G0632' => 'fan', 'FAN05G5378' => 'fan', 'FAN09G3247' => 'fan', 'FAN12G0435' => 'fan', 'FAN12G2426' => 'fan', 'FAN14G1707' => 'fan', 'FAN14G4725' => 'fan', 'FAN15G2071' => 'fan', 'FAN17G3065' => 'fan', 'FAN19G1376' => 'fan', 'FAN20G0354' => 'fan', 'FAN20G2429' => 'fan', 'FAN20G2658' => 'fan', 'FAN24G2343' => 'fan', 'FAN27G2362' => 'fan', 'FAN28G1765' => 'fan', 'FvH4_1g16020' => 'fve', 'FvH4_2g04890' => 'fve', 'FvH4_2g22270' => 'fve', 'FvH4_4g02630' => 'fve', 'FvH4_4g02640' => 'fve', 'FvH4_6g02650' => 'fve', 'Glyma.02G140600' => 'gma', 'Glyma.03G159900' => 'gma', 'Glyma.05G234800' => 'gma', 'Glyma.07G269600' => 'gma', 'Glyma.08G042300' => 'gma', 'Glyma.10G033500' => 'gma', 'Glyma.10G185200' => 'gma', 'Glyma.17G004300' => 'gma', 'Glyma.19G161900' => 'gma', 'Glyma.20G205100' => 'gma', 'Glyma.20G205200' => 'gma', 'Gohir.A01G139101' => 'ghi', 'Gohir.A02G035600' => 'ghi', 'Gohir.A02G117901' => 'ghi', 'Gohir.A07G210100' => 'ghi', 'Gohir.A07G210200' => 'ghi', 'Gohir.A08G061100' => 'ghi', 'Gohir.A09G223000' => 'ghi', 'Gohir.A09G223100' => 'ghi', 'Gohir.A10G113900' => 'ghi', 'Gohir.A10G114000' => 'ghi', 'Gohir.D02G042300' => 'ghi', 'Gohir.D07G216100' => 'ghi', 'Gohir.D07G216200' => 'ghi', 'Gohir.D08G070400' => 'ghi', 'Gohir.D09G225000' => 'ghi', 'Gohir.D09G225100' => 'ghi', 'Gohir.D10G152300' => 'ghi', 'Gohir.D10G153200' => 'ghi', 'Gohir.D11G133701' => 'ghi', 'Gorai.004G074100' => 'gra', 'Gorai.005G046800' => 'gra', 'Gorai.006G246500' => 'gra', 'Gorai.006G246600' => 'gra', 'Gorai.007G142900' => 'gra', 'Gorai.011G171000' => 'gra', 'Gorai.011G171100' => 'gra', 'Gorai.013G104300' => 'gra', 'Gorai.013G104400' => 'gra', 'GSVIVG01000754001' => 'vvi', 'GSVIVG01000756001' => 'vvi', 'GSVIVG01010903001' => 'vvi', 'GSVIVG01017623001' => 'vvi', 'GSVIVG01018113001' => 'vvi', 'GSVIVG01018116001' => 'vvi', 'GSVIVG01018118001' => 'vvi', 'HanXRQChr03g0076211' => 'han', 'HanXRQChr03g0092431' => 'han', 'HanXRQChr03g0092441' => 'han', 'HanXRQChr03g0092591' => 'han', 'HanXRQChr03g0092671' => 'han', 'HanXRQChr03g0092681' => 'han', 'HanXRQChr03g0092691' => 'han', 'HanXRQChr03g0092701' => 'han', 'HanXRQChr03g0092721' => 'han', 'HanXRQChr03g0092731' => 'han', 'HanXRQChr04g0113681' => 'han', 'HanXRQChr10g0281371' => 'han', 'HanXRQChr11g0337141' => 'han', 'HanXRQChr13g0424521' => 'han', 'HanXRQChr13g0424531' => 'han', 'HanXRQChr13g0424541' => 'han', 'HanXRQChr16g0498221' => 'han', 'Haze_04377' => 'cav', 'Haze_11298' => 'cav', 'Haze_24547' => 'cav', 'Haze_24550' => 'cav', 'Haze_26587' => 'cav', 'Hma1.2p1_0650F.1_g195410' => 'hma', 'Hma1.2p1_0893F.1_g233470' => 'hma', 'HPP92_006508' => 'vpl', 'HPP92_024780' => 'vpl', 'Hund02688' => 'sun', 'Hund09380' => 'sun', 'Hund09381' => 'sun', 'Hund09832' => 'sun', 'Hund09833' => 'sun', 'Hund11351' => 'sun', 'Hund11513' => 'sun', 'Lalb_Chr06g0162591' => 'lal', 'Lalb_Chr06g0162601' => 'lal', 'Lalb_Chr06g0169321' => 'lal', 'Lalb_Chr09g0330951' => 'lal', 'Lalb_Chr16g0387631' => 'lal', 'Lalb_Chr21g0306241' => 'lal', 'Lalb_Chr25g0290051' => 'lal', 'Lalb_Chr25g0290061' => 'lal', 'Lalb_Chr25g0290071' => 'lal', 'Lj1g0003876' => 'lja', 'Lj1P1207T36' => 'lonja', 'Lj2C1156G12' => 'lonja', 'Lj3A793G39' => 'lonja', 'Lj3C580G2' => 'lonja', 'Lj3C780G2' => 'lonja', 'Lj3C780T4' => 'lonja', 'Lj3C793G9' => 'lonja', 'Lj4g0012960' => 'lja', 'Lj5g0021252' => 'lja', 'Lj5g0021484' => 'lja', 'Lj5g0024528' => 'lja', 'Lj6A399T12' => 'lonja', 'Lj6A656G65' => 'lonja', 'Lsat_1_v5_gn_3_125500' => 'lsa', 'Lsat_1_v5_gn_3_125540' => 'lsa', 'Lsat_1_v5_gn_5_72701' => 'lsa', 'Lsat_1_v5_gn_8_91560' => 'lsa', 'Lsat_1_v5_gn_9_9640' => 'lsa', 'Manes.01G200600' => 'mes', 'Manes.01G200700' => 'mes', 'Manes.03G168900' => 'mes', 'Manes.03G169000' => 'mes', 'Manes.05G085801' => 'mes', 'Manes.05G086200' => 'mes', 'Manes.15G036700' => 'mes', 'Manes.15G036900' => 'mes', 'Mapoly0004s0172' => 'mpo', 'Mapoly0023s0001' => 'mpo', 'Mapoly0142s0012' => 'mpo', 'MBI01_g32854_MAGBIO' => 'mbi', 'MBI11_g24427_MAGBIO' => 'mbi', 'MBI11_g47319_MAGBIO' => 'mbi', 'MCO01G433' => 'mco', 'MD00G1187800' => 'mdo', 'MD04G1226500' => 'mdo', 'MD05G1203900' => 'mdo', 'MD10G1191100' => 'mdo', 'MD12G1243500' => 'mdo', 'MD13G1207000' => 'mdo', 'MD13G1207100' => 'mdo', 'MD16G1208600' => 'mdo', 'Medtr1g050352' => 'mtr', 'Medtr1g070385' => 'mtr', 'Medtr1g070450' => 'mtr', 'Medtr1g075200' => 'mtr', 'Medtr1g075250' => 'mtr', 'Medtr1g075260' => 'mtr', 'Medtr1g475250' => 'mtr', 'Medtr4g075450' => 'mtr', 'Medtr7g096300' => 'mtr', 'Medtr8g105110' => 'mtr', 'MELO3C006470.2' => 'cme', 'MELO3C006471.2' => 'cme', 'MELO3C020772.2' => 'cme', 'MELO3C026780.2' => 'cme', 'MELO3C026781.2' => 'cme', 'Migut.D00390' => 'egut', 'Migut.G00435' => 'egut', 'Migut.G00436' => 'egut', 'Migut.G00718' => 'egut', 'MSTRG.21891' => 'ama', 'MSTRG.26910' => 'ama', 'MSTRG.4099' => 'ama', 'MSTRG.9925' => 'ama', 'Nitab4.5_0000165g0010' => 'nta', 'Nitab4.5_0000209g0180' => 'nta', 'Nitab4.5_0000244g0440' => 'nta', 'Nitab4.5_0000525g0220' => 'nta', 'Nitab4.5_0001597g0020' => 'nta', 'Nitab4.5_0001878g0040' => 'nta', 'Nitab4.5_0001878g0060' => 'nta', 'Nitab4.5_0002838g0100' => 'nta', 'Nitab4.5_0002838g0120' => 'nta', 'Nitab4.5_0004798g0030' => 'nta', 'Nitab4.5_0005420g0010' => 'nta', 'Nitab4.5_0005507g0010' => 'nta', 'Nitab4.5_0005574g0020' => 'nta', 'Nitab4.5_0005838g0010' => 'nta', 'Nitab4.5_0010580g0020' => 'nta', 'Nn1g02599' => 'nnu', 'Nn1g02608' => 'nnu', 'Nn3g17742' => 'nnu', 'Nn3g19534' => 'nnu', 'Nn3g19535' => 'nnu', 'Oeu008790.1' => 'oeu', 'Oeu008792.1' => 'oeu', 'Oeu032590.1' => 'oeu', 'Oeu035349.1' => 'oeu', 'Oeu049791.1' => 'oeu', 'Os01g0774500' => 'osa', 'Os03g0628800' => 'osa', 'Os03g0798600' => 'osa', 'Os05g0508800' => 'osa', 'Peaxi162Scf00036g02018' => 'pax', 'Peaxi162Scf00578g00032' => 'pax', 'Peaxi162Scf00578g00317' => 'pax', 'Peaxi162Scf00785g00114' => 'pax', 'Peaxi162Scf00813g00119' => 'pax', 'Peaxi162Scf00906g00227' => 'pax', 'PGR004G0875' => 'pgr', 'PGR004G2424' => 'pgr', 'PGR031G1239' => 'pgr', 'PGR031G2474' => 'pgr', 'PGR044G0423' => 'pgr', 'PGSC0003DMG400001128' => 'stu', 'PGSC0003DMG400007336' => 'stu', 'PGSC0003DMG400016318' => 'stu', 'PGSC0003DMG400016319' => 'stu', 'PGSC0003DMG400018074' => 'stu', 'Phvul.001G157700' => 'pvu', 'Phvul.002G148550' => 'pvu', 'Phvul.002G320200' => 'pvu', 'Phvul.003G089200' => 'pvu', 'Phvul.007G126000' => 'pvu', 'Phvul.007G126100' => 'pvu', 'Phvul.007G178000' => 'pvu', 'Phvul.007G178200' => 'pvu', 'Potri.002G043000' => 'ptr', 'Potri.002G043200' => 'ptr', 'Potri.003G123750' => 'ptr', 'Potri.005G055401' => 'ptr', 'Potri.005G219700' => 'ptr', 'Potri.005G220000' => 'ptr', 'Potri.008G161901' => 'ptr', 'Potri.008G162000' => 'ptr', 'Potri.008G162400' => 'ptr', 'Potri.010G076900' => 'ptr', 'Pp3c12_9180' => 'ppa', 'Pp3c13_19770' => 'ppa', 'Pp3c14_22950' => 'ppa', 'Pp3c16_12160' => 'ppa', 'Pp3c27_7820' => 'ppa', 'Pp3c2_3490' => 'ppa', 'Pp3c3_23700' => 'ppa', 'Pp3c3_36520' => 'ppa', 'Pp3c4_15250' => 'ppa', 'PRCOL_00007002' => 'pco', 'Prupe.1G030600' => 'ppe', 'Prupe.1G030700' => 'ppe', 'Prupe.6G345200' => 'ppe', 'Prupe.8G230300' => 'ppe', 'Prupe.8G230500' => 'ppe', 'Psat3g059600' => 'psa', 'Psat5g200920' => 'psa', 'Psat6g056440' => 'psa', 'Psat6g057360' => 'psa', 'Psat6g134120' => 'psa', 'Psat6g134160' => 'psa', 'Psat7g008640' => 'psa', 'Psat7g185240' => 'psa', 'PSO017G1330' => 'pso', 'PSO063G6097' => 'pso', 'PSO170G0835' => 'pso', 'PSO170G2499' => 'pso', 'PSO210G5058' => 'pso', 'PSO210G6154' => 'pso', 'PSO585G0031' => 'pso', 'PSO832G0264' => 'pso', 'PSO832G4288' => 'pso', 'QL03p027355' => 'qlo', 'QL03p027430' => 'qlo', 'QL04p081380' => 'qlo', 'QL06p015642' => 'qlo', 'QL06p015650' => 'qlo', 'QL06p015686' => 'qlo', 'QL12p042927' => 'qlo', 'QL93p1863_0035' => 'qlo', 'RcHm_v2.0_Chr3g0450581' => 'rch', 'RcHm_v2.0_Chr4g0390371' => 'rch', 'RcHm_v2.0_Chr4g0390381' => 'rch', 'RcHm_v2.0_Chr4g0390491' => 'rch', 'RcHm_v2.0_Chr4g0390501' => 'rch', 'RcHm_v2.0_Chr6g0289231' => 'rch', 'Rhsim04G0190400' => 'rsi', 'Rhsim04G0190500' => 'rsi', 'Rhsim04G0190600' => 'rsi', 'Rhsim13G0031400' => 'rsi', 'Rhsim13G0165600' => 'rsi', 'RhsimUnG0114600' => 'rsi', 'RhsimUnG0114700' => 'rsi', 'Sabra02G0034800' => 'sbr', 'Sabra02G0035100' => 'sbr', 'Sabra05G0168600' => 'sbr', 'Sabra05G0168800' => 'sbr', 'Sabra08G0123700' => 'sbr', 'Sabra10G0031900' => 'sbr', 'Sabra13G0039000' => 'sbr', 'SalBow2G0782' => 'sbo', 'SalBow2G1403' => 'sbo', 'SalBow4G0074' => 'sbo', 'SalBow4G2635' => 'sbo', 'SalBow5G3010' => 'sbo', 'Sc05g0000870' => 'sci', 'Sc05g0000890' => 'sci', 'Sc13g0005000' => 'sci', 'Sc13g0005030' => 'sci', 'Sc19g0003790' => 'sci', 'Sc19g0003800' => 'sci', 'Sed0003467' => 'sed', 'Sed0009355' => 'sed', 'Sed0009894' => 'sed', 'Sed0011972' => 'sed', 'Sed0021483' => 'sed', 'Sed0021750' => 'sed', 'Sed0026279' => 'sed', 'SEGI_05312' => 'sgi', 'SEGI_10112' => 'sgi', 'SEGI_15835' => 'sgi', 'SEGI_30386' => 'sgi', 'SEGI_34122' => 'sgi', 'SEGI_35063' => 'sgi', 'SGA_v2.0_scaffold101G29794' => 'sas', 'SGA_v2.0_scaffold1G00573' => 'sas', 'SGA_v2.0_scaffold79G25637' => 'sas', 'SGA_v2.0_scaffold88G27283' => 'sas', 'SGA_v2.0_scaffold88G27285' => 'sas', 'SGA_v2.0_scaffold88G27331' => 'sas', 'SHI09937' => 'shi', 'SMO119G0302' => 'smo', 'SMO137G0231' => 'smo', 'SMO367G1151' => 'smo', 'Solyc02g082000.3' => 'sly', 'Solyc06g031670.3' => 'sly', 'Solyc06g053810.3' => 'sly', 'Solyc07g025457.1' => 'sly', 'Solyc08g059740.1' => 'sly', 'Solyc08g059750.3' => 'sly', 'Solyc09g083370.3' => 'sly', 'Solyc12g038950.3' => 'sly', 'Sopen02g026630' => 'spe', 'Sopen06g018930' => 'spe', 'Sopen06g018940' => 'spe', 'Sopen08g009460' => 'spe', 'Sopen09g032290' => 'spe', 'Sp1g03080' => 'spa', 'Sp1g03090' => 'spa', 'Sp1g05480' => 'spa', 'Sp2g07860' => 'spa', 'Sp2g08430' => 'spa', 'Sp2g08440' => 'spa', 'Sp2g26200' => 'spa', 'Sp4g13170' => 'spa', 'Sp6g33840' => 'spa', 'SpUn1204_0010' => 'spa', 'TAR365G0908' => 'tar', 'TAR381G1270' => 'tar', 'TAR381G1651' => 'tar', 'TAR625G1131' => 'tar', 'TAR633G0962' => 'tar', 'TAR633G1729' => 'tar', 'TAR633G1864' => 'tar', 'TAR636G0221' => 'tar', 'TAR636G0314' => 'tar', 'TAR636G3202' => 'tar', 'THA.LOC104800805' => 'tha', 'THA.LOC104801096' => 'tha', 'THA.LOC104801555' => 'tha', 'THA.LOC104808491' => 'tha', 'THA.LOC104808595' => 'tha', 'THA.LOC104815985' => 'tha', 'THA.LOC104822250' => 'tha', 'THA.LOC104826071' => 'tha', 'Thecc.01G265200' => 'tca', 'Thecc.01G265300' => 'tca', 'Thecc.01G265700' => 'tca', 'Thecc.03G109100' => 'tca', 'Thecc.04G245900' => 'tca', 'Thecc.04G246000' => 'tca', 'Thhalv10003334m.g' => 'esa', 'Thhalv10005508m.g' => 'esa', 'Thhalv10005643m.g' => 'esa', 'Thhalv10007316m.g' => 'esa', 'Thhalv10009006m.g' => 'esa', 'Thhalv10009309m.g' => 'esa', 'Thhalv10014917m.g' => 'esa', 'Thhalv10014919m.g' => 'esa', 'Thhalv10015393m.g' => 'esa', 'Thhalv10016515m.g' => 'esa', 'Thhalv10029242m.g' => 'esa', 'TPR.G16654' => 'tpr', 'TPR.G20589' => 'tpr', 'TPR.G23029' => 'tpr', 'TPR.G27731' => 'tpr', 'TPR.G28889' => 'tpr', 'TPR.G28899' => 'tpr', 'TPR.G30846' => 'tpr', 'TPR.G5452' => 'tpr', 'TPR.G5713' => 'tpr', 'TPR.G9046' => 'tpr', 'TPR.G9061' => 'tpr', 'TWI09G1075' => 'twi', 'TWI12G0806' => 'twi', 'TWI18G0108' => 'twi', 'TWI53G1361' => 'twi', 'TWI73G0185' => 'twi', 'TWI73G0427' => 'twi', 'unitig_37.g12001' => 'ugi', 'unitig_747.g21660' => 'ugi', 'unitig_748.g7232' => 'ugi', 'unitig_748.g7315' => 'ugi', 'unitig_85.g27262' => 'ugi', 'unitig_92.g28220' => 'ugi', 'vmacro02632' => 'vma', 'vmacro08410' => 'vma', 'vmacro08411' => 'vma', 'vmacro15407' => 'vma', 'VMungo0251G3619' => 'vmu', 'VMungo0720G1204' => 'vmu', 'VMungo0720G1918' => 'vmu', 'VMungo0720G2387' => 'vmu', 'VMungo0720G2961' => 'vmu', 'VMungo1215G2154' => 'vmu', 'VMungo1383G2411' => 'vmu', 'Zm00001eb051130' => 'zma', 'Zm00001eb116830' => 'zma', 'Zm00001eb116850' => 'zma', 'Zm00001eb151740' => 'zma', 'Zm00001eb292360' => 'zma', 'Zm00001eb301640' => 'zma' ), 'gf_id' => 'HOM05D000856', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000856' ), 'data_identifier' => 'HOM05D000856', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000856', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p00010' => 'bna', 'A03p04160' => 'bna', 'A03p17160' => 'bna', 'A04p23370' => 'bna', 'A05p14860' => 'bna', 'A08p37020' => 'bna', 'A09p08050' => 'bna', 'A09p66800' => 'bna', 'A09p67940' => 'bna', 'A10p02680' => 'bna', 'A10p05320' => 'bna', 'Aa31LG1G20560' => 'aar', 'Aa31LG1G20610' => 'aar', 'Aa31LG1G7810' => 'aar', 'Aa31LG5G3590' => 'aar', 'Aa31LG5G6140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3819' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4683' => 'aag', 'Actinidia04480' => 'ach', 'Actinidia05466' => 'ach', 'Actinidia08445' => 'ach', 'Actinidia21170' => 'ach', 'Actinidia24812' => 'ach', 'Actinidia24951' => 'ach', 'Actinidia40088' => 'ach', 'Ah.02g111660' => 'amhyb', 'Ah.11g048900' => 'amhyb', 'Ah.11g049910' => 'amhyb', 'AL1G13870' => 'aly', 'AL1G13880' => 'aly', 'AL1G16760' => 'aly', 'AL390U10020' => 'aly', 'AL4G25520' => 'aly', 'AL6G19890' => 'aly', 'AL6G19900' => 'aly', 'AL6G19910' => 'aly', 'AL8G40100' => 'aly', 'Aqoxy2G03562' => 'aox', 'Aqoxy5G00316' => 'aox', 'Aqoxy5G00926' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1628KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1H403S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2FU6SJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.882I6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8YRY2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YN1SN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AF70II' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZA8L1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F916KL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHRD8H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KTZ8QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S22EMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8M29T' => 'arhy', 'AT1G04270' => 'ath', 'AT1G04280' => 'ath', 'AT1G06750' => 'ath', 'AT1G33850' => 'ath', 'AT2G30630' => 'ath', 'AT5G09490' => 'ath', 'AT5G09500' => 'ath', 'AT5G09510' => 'ath', 'AT5G43640' => 'ath', 'AT5G63070' => 'ath', 'ATR0605G315' => 'atr', 'Atru.chr11.175' => 'acertr', 'Atru.chr11.653' => 'acertr', 'Atru.chr3.1616' => 'acertr', 'Atru.chr4.2230' => 'acertr', 'Atru.chr4.2232' => 'acertr', 'Atru.chr5.1598' => 'acertr', 'Atru.chr5.1600' => 'acertr', 'Atru.chr5.2188' => 'acertr', 'AUR62008326' => 'cqu', 'AUR62011922' => 'cqu', 'AUR62011924' => 'cqu', 'AUR62021771' => 'cqu', 'AUR62032237' => 'cqu', 'AUR62032240' => 'cqu', 'BcaB01g05572' => 'bca', 'BcaB02g10337' => 'bca', 'BcaB04g19944' => 'bca', 'BcaB05g21548' => 'bca', 'BcaB05g21549' => 'bca', 'BcaB05g23227' => 'bca', 'BcaB06g26256' => 'bca', 'BcaB06g26257' => 'bca', 'BcaB06g28379' => 'bca', 'BcaC02g11159' => 'bca', 'BcaC03g13258' => 'bca', 'BcaC03g13259' => 'bca', 'BcaC05g24456' => 'bca', 'BcaC05g24457' => 'bca', 'BcaC07g36922' => 'bca', 'BcaC07g36923' => 'bca', 'BcaC07g42050' => 'bca', 'BcaC07g42176' => 'bca', 'BcaC07g42195' => 'bca', 'BcaC07g42196' => 'bca', 'BcaNung06674' => 'bca', 'BolC2t06351H' => 'bol', 'BolC2t06352H' => 'bol', 'BolC3t12993H' => 'bol', 'BolC4t23525H' => 'bol', 'BolC4t27475H' => 'bol', 'BolC5t29025H' => 'bol', 'BolC5t29026H' => 'bol', 'BolC8t46898H' => 'bol', 'BolC8t46899H' => 'bol', 'BolC8t52630H' => 'bol', 'BolC8t52765H' => 'bol', 'BolC9t53824H' => 'bol', 'BraA03t09760Z' => 'bra', 'BraA03t10990Z' => 'bra', 'BraA05t20413Z' => 'bra', 'BraA08t35602Z' => 'bra', 'BraA09t36458Z' => 'bra', 'BraA09t42018Z' => 'bra', 'BraA09t42129Z' => 'bra', 'BraA10t42536Z' => 'bra', 'BraA10t42537Z' => 'bra', 'C01p10690' => 'bna', 'C02p03890' => 'bna', 'C02p03900' => 'bna', 'C03p04620' => 'bna', 'C04p19870' => 'bna', 'C04p59670' => 'bna', 'C05p02460' => 'bna', 'C05p02470' => 'bna', 'C08p00980' => 'bna', 'C08p00990' => 'bna', 'C08p51030' => 'bna', 'C08p52360' => 'bna', 'C09p09120' => 'bna', 'CAN.G19.15' => 'can', 'CAN.G251.10' => 'can', 'CAN.G251.9' => 'can', 'CAN.G398.24' => 'can', 'CAN.G410.32' => 'can', 'CAN.G881.2' => 'can', 'CANSAT01G3025' => 'cansat', 'CANSAT78G1211' => 'cansat', 'CANSAT78G1218' => 'cansat', 'CANSAT78G1521' => 'cansat', 'CANSAT78G1670' => 'cansat', 'CARHR003600' => 'chi', 'CARHR003610' => 'chi', 'CARHR006290' => 'chi', 'CARHR006430' => 'chi', 'CARHR124110' => 'chi', 'CARHR203870' => 'chi', 'CARHR203880' => 'chi', 'CARHR203890' => 'chi', 'CARHR276880' => 'chi', 'Carub.0001s0346' => 'cru', 'Carub.0001s0347' => 'cru', 'Carub.0001s0607' => 'cru', 'Carub.0003s2768' => 'cru', 'Carub.0003s2769' => 'cru', 'Carub.0004s1178' => 'cru', 'Carub.0006s0806' => 'cru', 'Carub.0006s0807' => 'cru', 'Carub.0006s0808' => 'cru', 'Carub.0008s0501' => 'cru', 'Carub.0008s2379' => 'cru', 'Ca_08655_v3' => 'car', 'Ca_08922_v3' => 'car', 'Ca_08923_v3' => 'car', 'Ca_09119_v3' => 'car', 'Ca_09703_v3' => 'car', 'Ca_09705_v3' => 'car', 'Ca_09835_v3' => 'car', 'Ca_26403_v3' => 'car', 'Ca_30719_v3' => 'car', 'CBR_g17958' => 'cbr', 'CBR_g40516' => 'cbr', 'Cc00_g05350' => 'ccan', 'Cc01_g18690' => 'ccan', 'Cc03_g04830' => 'ccan', 'Cc03_g04850' => 'ccan', 'CDE02G4469' => 'cde', 'CDE06G0883' => 'cde', 'CDE06G1295' => 'cde', 'CDE06G1390' => 'cde', 'CDE07G0584' => 'cde', 'CDE07G1084' => 'cde', 'CDE08G1259' => 'cde', 'Cfa002341' => 'cfa', 'Cfa024337' => 'cfa', 'Ciclev10004749m.g' => 'ccl', 'Ciclev10006127m.g' => 'ccl', 'Ciclev10019720m.g' => 'ccl', 'Ciclev10022652m.g' => 'ccl', 'CiPaw.01G190400' => 'cil', 'CiPaw.01G190500' => 'cil', 'CiPaw.02G116400' => 'cil', 'CiPaw.02G116500' => 'cil', 'CiPaw.04G183000' => 'cil', 'CiPaw.04G183300' => 'cil', 'ClCG05G004610' => 'cla', 'ClCG05G004620' => 'cla', 'ClCG06G006730' => 'cla', 'ClCG06G006740' => 'cla', 'ClCG11G003690' => 'cla', 'COL.COLO4_08276' => 'col', 'COL.COLO4_08277' => 'col', 'COL.COLO4_15787' => 'col', 'COL.COLO4_15789' => 'col', 'Cpa.g.c44815' => 'cpa', 'Cpa.g.sc52.144' => 'cpa', 'Cpa.g.sc58.46' => 'cpa', 'Cpa.g.sc58.47' => 'cpa', 'Cre08.g360900' => 'cre', 'CsaV3_2G013030' => 'csa', 'CsaV3_2G013050' => 'csa', 'CsaV3_2G015620' => 'csa', 'CsaV3_3G012590' => 'csa', 'CsaV3_3G012600' => 'csa', 'CSS0001641' => 'camsi', 'CSS0008310' => 'camsi', 'CSS0013011' => 'camsi', 'CSS0017147' => 'camsi', 'CSS0022970' => 'camsi', 'CSS0025655' => 'camsi', 'CSS0028665' => 'camsi', 'CSS0029117' => 'camsi', 'CSS0032024' => 'camsi', 'CSS0039681' => 'camsi', 'CSS0046516' => 'camsi', 'CSS0050307' => 'camsi', 'DCAR_005871' => 'dca', 'DCAR_007342' => 'dca', 'DCAR_024228' => 'dca', 'DCAR_027277' => 'dca', 'DCAR_030718' => 'dca', 'Dinv20287' => 'din', 'Dinv22461' => 'din', 'Dinv22464' => 'din', 'Dinv29912' => 'din', 'Dinv29913' => 'din', 'Dinv34580' => 'din', 'Dinv34582' => 'din', 'Dinv44632' => 'din', 'Duzib052G0266' => 'dzi', 'Duzib133G0907' => 'dzi', 'Duzib133G1034' => 'dzi', 'Duzib138G0207' => 'dzi', 'Duzib138G0491' => 'dzi', 'Duzib151G0812' => 'dzi', 'Duzib151G1166' => 'dzi', 'Duzib168G0192' => 'dzi', 'Duzib211G0077' => 'dzi', 'Duzib212G0429' => 'dzi', 'Duzib212G0472' => 'dzi', 'ECA233G2617' => 'eca', 'ECA236G4188' => 'eca', 'ECA240G0936' => 'eca', 'ECA240G1129' => 'eca', 'ECA247G0623' => 'eca', 'EL10Ac5g10451' => 'bvu', 'EL10Ac5g10453' => 'bvu', 'EL10Ac5g10894' => 'bvu', 'Eucgr.H00192' => 'egr', 'Eucgr.H00193' => 'egr', 'Eucgr.H00194' => 'egr', 'Eucgr.J01562' => 'egr', 'Eucgr.K03301' => 'egr', 'FAN02G0632' => 'fan', 'FAN05G5378' => 'fan', 'FAN09G3247' => 'fan', 'FAN12G0435' => 'fan', 'FAN12G2426' => 'fan', 'FAN14G1707' => 'fan', 'FAN14G4725' => 'fan', 'FAN15G2071' => 'fan', 'FAN17G3065' => 'fan', 'FAN19G1376' => 'fan', 'FAN20G0354' => 'fan', 'FAN20G2429' => 'fan', 'FAN20G2658' => 'fan', 'FAN24G2343' => 'fan', 'FAN27G2362' => 'fan', 'FAN28G1765' => 'fan', 'FvH4_1g16020' => 'fve', 'FvH4_2g04890' => 'fve', 'FvH4_2g22270' => 'fve', 'FvH4_4g02630' => 'fve', 'FvH4_4g02640' => 'fve', 'FvH4_6g02650' => 'fve', 'Glyma.02G140600' => 'gma', 'Glyma.03G159900' => 'gma', 'Glyma.05G234800' => 'gma', 'Glyma.07G269600' => 'gma', 'Glyma.08G042300' => 'gma', 'Glyma.10G033500' => 'gma', 'Glyma.10G185200' => 'gma', 'Glyma.17G004300' => 'gma', 'Glyma.19G161900' => 'gma', 'Glyma.20G205100' => 'gma', 'Glyma.20G205200' => 'gma', 'Gohir.A01G139101' => 'ghi', 'Gohir.A02G035600' => 'ghi', 'Gohir.A02G117901' => 'ghi', 'Gohir.A07G210100' => 'ghi', 'Gohir.A07G210200' => 'ghi', 'Gohir.A08G061100' => 'ghi', 'Gohir.A09G223000' => 'ghi', 'Gohir.A09G223100' => 'ghi', 'Gohir.A10G113900' => 'ghi', 'Gohir.A10G114000' => 'ghi', 'Gohir.D02G042300' => 'ghi', 'Gohir.D07G216100' => 'ghi', 'Gohir.D07G216200' => 'ghi', 'Gohir.D08G070400' => 'ghi', 'Gohir.D09G225000' => 'ghi', 'Gohir.D09G225100' => 'ghi', 'Gohir.D10G152300' => 'ghi', 'Gohir.D10G153200' => 'ghi', 'Gohir.D11G133701' => 'ghi', 'Gorai.004G074100' => 'gra', 'Gorai.005G046800' => 'gra', 'Gorai.006G246500' => 'gra', 'Gorai.006G246600' => 'gra', 'Gorai.007G142900' => 'gra', 'Gorai.011G171000' => 'gra', 'Gorai.011G171100' => 'gra', 'Gorai.013G104300' => 'gra', 'Gorai.013G104400' => 'gra', 'GSVIVG01000754001' => 'vvi', 'GSVIVG01000756001' => 'vvi', 'GSVIVG01010903001' => 'vvi', 'GSVIVG01017623001' => 'vvi', 'GSVIVG01018113001' => 'vvi', 'GSVIVG01018116001' => 'vvi', 'GSVIVG01018118001' => 'vvi', 'HanXRQChr03g0076211' => 'han', 'HanXRQChr03g0092431' => 'han', 'HanXRQChr03g0092441' => 'han', 'HanXRQChr03g0092591' => 'han', 'HanXRQChr03g0092671' => 'han', 'HanXRQChr03g0092681' => 'han', 'HanXRQChr03g0092691' => 'han', 'HanXRQChr03g0092701' => 'han', 'HanXRQChr03g0092721' => 'han', 'HanXRQChr03g0092731' => 'han', 'HanXRQChr04g0113681' => 'han', 'HanXRQChr10g0281371' => 'han', 'HanXRQChr11g0337141' => 'han', 'HanXRQChr13g0424521' => 'han', 'HanXRQChr13g0424531' => 'han', 'HanXRQChr13g0424541' => 'han', 'HanXRQChr16g0498221' => 'han', 'Haze_04377' => 'cav', 'Haze_11298' => 'cav', 'Haze_24547' => 'cav', 'Haze_24550' => 'cav', 'Haze_26587' => 'cav', 'Hma1.2p1_0650F.1_g195410' => 'hma', 'Hma1.2p1_0893F.1_g233470' => 'hma', 'HPP92_006508' => 'vpl', 'HPP92_024780' => 'vpl', 'Hund02688' => 'sun', 'Hund09380' => 'sun', 'Hund09381' => 'sun', 'Hund09832' => 'sun', 'Hund09833' => 'sun', 'Hund11351' => 'sun', 'Hund11513' => 'sun', 'Lalb_Chr06g0162591' => 'lal', 'Lalb_Chr06g0162601' => 'lal', 'Lalb_Chr06g0169321' => 'lal', 'Lalb_Chr09g0330951' => 'lal', 'Lalb_Chr16g0387631' => 'lal', 'Lalb_Chr21g0306241' => 'lal', 'Lalb_Chr25g0290051' => 'lal', 'Lalb_Chr25g0290061' => 'lal', 'Lalb_Chr25g0290071' => 'lal', 'Lj1g0003876' => 'lja', 'Lj1P1207T36' => 'lonja', 'Lj2C1156G12' => 'lonja', 'Lj3A793G39' => 'lonja', 'Lj3C580G2' => 'lonja', 'Lj3C780G2' => 'lonja', 'Lj3C780T4' => 'lonja', 'Lj3C793G9' => 'lonja', 'Lj4g0012960' => 'lja', 'Lj5g0021252' => 'lja', 'Lj5g0021484' => 'lja', 'Lj5g0024528' => 'lja', 'Lj6A399T12' => 'lonja', 'Lj6A656G65' => 'lonja', 'Lsat_1_v5_gn_3_125500' => 'lsa', 'Lsat_1_v5_gn_3_125540' => 'lsa', 'Lsat_1_v5_gn_5_72701' => 'lsa', 'Lsat_1_v5_gn_8_91560' => 'lsa', 'Lsat_1_v5_gn_9_9640' => 'lsa', 'Manes.01G200600' => 'mes', 'Manes.01G200700' => 'mes', 'Manes.03G168900' => 'mes', 'Manes.03G169000' => 'mes', 'Manes.05G085801' => 'mes', 'Manes.05G086200' => 'mes', 'Manes.15G036700' => 'mes', 'Manes.15G036900' => 'mes', 'Mapoly0004s0172' => 'mpo', 'Mapoly0023s0001' => 'mpo', 'Mapoly0142s0012' => 'mpo', 'MBI01_g32854_MAGBIO' => 'mbi', 'MBI11_g24427_MAGBIO' => 'mbi', 'MBI11_g47319_MAGBIO' => 'mbi', 'MCO01G433' => 'mco', 'MD00G1187800' => 'mdo', 'MD04G1226500' => 'mdo', 'MD05G1203900' => 'mdo', 'MD10G1191100' => 'mdo', 'MD12G1243500' => 'mdo', 'MD13G1207000' => 'mdo', 'MD13G1207100' => 'mdo', 'MD16G1208600' => 'mdo', 'Medtr1g050352' => 'mtr', 'Medtr1g070385' => 'mtr', 'Medtr1g070450' => 'mtr', 'Medtr1g075200' => 'mtr', 'Medtr1g075250' => 'mtr', 'Medtr1g075260' => 'mtr', 'Medtr1g475250' => 'mtr', 'Medtr4g075450' => 'mtr', 'Medtr7g096300' => 'mtr', 'Medtr8g105110' => 'mtr', 'MELO3C006470.2' => 'cme', 'MELO3C006471.2' => 'cme', 'MELO3C020772.2' => 'cme', 'MELO3C026780.2' => 'cme', 'MELO3C026781.2' => 'cme', 'Migut.D00390' => 'egut', 'Migut.G00435' => 'egut', 'Migut.G00436' => 'egut', 'Migut.G00718' => 'egut', 'MSTRG.21891' => 'ama', 'MSTRG.26910' => 'ama', 'MSTRG.4099' => 'ama', 'MSTRG.9925' => 'ama', 'Nitab4.5_0000165g0010' => 'nta', 'Nitab4.5_0000209g0180' => 'nta', 'Nitab4.5_0000244g0440' => 'nta', 'Nitab4.5_0000525g0220' => 'nta', 'Nitab4.5_0001597g0020' => 'nta', 'Nitab4.5_0001878g0040' => 'nta', 'Nitab4.5_0001878g0060' => 'nta', 'Nitab4.5_0002838g0100' => 'nta', 'Nitab4.5_0002838g0120' => 'nta', 'Nitab4.5_0004798g0030' => 'nta', 'Nitab4.5_0005420g0010' => 'nta', 'Nitab4.5_0005507g0010' => 'nta', 'Nitab4.5_0005574g0020' => 'nta', 'Nitab4.5_0005838g0010' => 'nta', 'Nitab4.5_0010580g0020' => 'nta', 'Nn1g02599' => 'nnu', 'Nn1g02608' => 'nnu', 'Nn3g17742' => 'nnu', 'Nn3g19534' => 'nnu', 'Nn3g19535' => 'nnu', 'Oeu008790.1' => 'oeu', 'Oeu008792.1' => 'oeu', 'Oeu032590.1' => 'oeu', 'Oeu035349.1' => 'oeu', 'Oeu049791.1' => 'oeu', 'Os01g0774500' => 'osa', 'Os03g0628800' => 'osa', 'Os03g0798600' => 'osa', 'Os05g0508800' => 'osa', 'Peaxi162Scf00036g02018' => 'pax', 'Peaxi162Scf00578g00032' => 'pax', 'Peaxi162Scf00578g00317' => 'pax', 'Peaxi162Scf00785g00114' => 'pax', 'Peaxi162Scf00813g00119' => 'pax', 'Peaxi162Scf00906g00227' => 'pax', 'PGR004G0875' => 'pgr', 'PGR004G2424' => 'pgr', 'PGR031G1239' => 'pgr', 'PGR031G2474' => 'pgr', 'PGR044G0423' => 'pgr', 'PGSC0003DMG400001128' => 'stu', 'PGSC0003DMG400007336' => 'stu', 'PGSC0003DMG400016318' => 'stu', 'PGSC0003DMG400016319' => 'stu', 'PGSC0003DMG400018074' => 'stu', 'Phvul.001G157700' => 'pvu', 'Phvul.002G148550' => 'pvu', 'Phvul.002G320200' => 'pvu', 'Phvul.003G089200' => 'pvu', 'Phvul.007G126000' => 'pvu', 'Phvul.007G126100' => 'pvu', 'Phvul.007G178000' => 'pvu', 'Phvul.007G178200' => 'pvu', 'Potri.002G043000' => 'ptr', 'Potri.002G043200' => 'ptr', 'Potri.003G123750' => 'ptr', 'Potri.005G055401' => 'ptr', 'Potri.005G219700' => 'ptr', 'Potri.005G220000' => 'ptr', 'Potri.008G161901' => 'ptr', 'Potri.008G162000' => 'ptr', 'Potri.008G162400' => 'ptr', 'Potri.010G076900' => 'ptr', 'Pp3c12_9180' => 'ppa', 'Pp3c13_19770' => 'ppa', 'Pp3c14_22950' => 'ppa', 'Pp3c16_12160' => 'ppa', 'Pp3c27_7820' => 'ppa', 'Pp3c2_3490' => 'ppa', 'Pp3c3_23700' => 'ppa', 'Pp3c3_36520' => 'ppa', 'Pp3c4_15250' => 'ppa', 'PRCOL_00007002' => 'pco', 'Prupe.1G030600' => 'ppe', 'Prupe.1G030700' => 'ppe', 'Prupe.6G345200' => 'ppe', 'Prupe.8G230300' => 'ppe', 'Prupe.8G230500' => 'ppe', 'Psat3g059600' => 'psa', 'Psat5g200920' => 'psa', 'Psat6g056440' => 'psa', 'Psat6g057360' => 'psa', 'Psat6g134120' => 'psa', 'Psat6g134160' => 'psa', 'Psat7g008640' => 'psa', 'Psat7g185240' => 'psa', 'PSO017G1330' => 'pso', 'PSO063G6097' => 'pso', 'PSO170G0835' => 'pso', 'PSO170G2499' => 'pso', 'PSO210G5058' => 'pso', 'PSO210G6154' => 'pso', 'PSO585G0031' => 'pso', 'PSO832G0264' => 'pso', 'PSO832G4288' => 'pso', 'QL03p027355' => 'qlo', 'QL03p027430' => 'qlo', 'QL04p081380' => 'qlo', 'QL06p015642' => 'qlo', 'QL06p015650' => 'qlo', 'QL06p015686' => 'qlo', 'QL12p042927' => 'qlo', 'QL93p1863_0035' => 'qlo', 'RcHm_v2.0_Chr3g0450581' => 'rch', 'RcHm_v2.0_Chr4g0390371' => 'rch', 'RcHm_v2.0_Chr4g0390381' => 'rch', 'RcHm_v2.0_Chr4g0390491' => 'rch', 'RcHm_v2.0_Chr4g0390501' => 'rch', 'RcHm_v2.0_Chr6g0289231' => 'rch', 'Rhsim04G0190400' => 'rsi', 'Rhsim04G0190500' => 'rsi', 'Rhsim04G0190600' => 'rsi', 'Rhsim13G0031400' => 'rsi', 'Rhsim13G0165600' => 'rsi', 'RhsimUnG0114600' => 'rsi', 'RhsimUnG0114700' => 'rsi', 'Sabra02G0034800' => 'sbr', 'Sabra02G0035100' => 'sbr', 'Sabra05G0168600' => 'sbr', 'Sabra05G0168800' => 'sbr', 'Sabra08G0123700' => 'sbr', 'Sabra10G0031900' => 'sbr', 'Sabra13G0039000' => 'sbr', 'SalBow2G0782' => 'sbo', 'SalBow2G1403' => 'sbo', 'SalBow4G0074' => 'sbo', 'SalBow4G2635' => 'sbo', 'SalBow5G3010' => 'sbo', 'Sc05g0000870' => 'sci', 'Sc05g0000890' => 'sci', 'Sc13g0005000' => 'sci', 'Sc13g0005030' => 'sci', 'Sc19g0003790' => 'sci', 'Sc19g0003800' => 'sci', 'Sed0003467' => 'sed', 'Sed0009355' => 'sed', 'Sed0009894' => 'sed', 'Sed0011972' => 'sed', 'Sed0021483' => 'sed', 'Sed0021750' => 'sed', 'Sed0026279' => 'sed', 'SEGI_05312' => 'sgi', 'SEGI_10112' => 'sgi', 'SEGI_15835' => 'sgi', 'SEGI_30386' => 'sgi', 'SEGI_34122' => 'sgi', 'SEGI_35063' => 'sgi', 'SGA_v2.0_scaffold101G29794' => 'sas', 'SGA_v2.0_scaffold1G00573' => 'sas', 'SGA_v2.0_scaffold79G25637' => 'sas', 'SGA_v2.0_scaffold88G27283' => 'sas', 'SGA_v2.0_scaffold88G27285' => 'sas', 'SGA_v2.0_scaffold88G27331' => 'sas', 'SHI09937' => 'shi', 'SMO119G0302' => 'smo', 'SMO137G0231' => 'smo', 'SMO367G1151' => 'smo', 'Solyc02g082000.3' => 'sly', 'Solyc06g031670.3' => 'sly', 'Solyc06g053810.3' => 'sly', 'Solyc07g025457.1' => 'sly', 'Solyc08g059740.1' => 'sly', 'Solyc08g059750.3' => 'sly', 'Solyc09g083370.3' => 'sly', 'Solyc12g038950.3' => 'sly', 'Sopen02g026630' => 'spe', 'Sopen06g018930' => 'spe', 'Sopen06g018940' => 'spe', 'Sopen08g009460' => 'spe', 'Sopen09g032290' => 'spe', 'Sp1g03080' => 'spa', 'Sp1g03090' => 'spa', 'Sp1g05480' => 'spa', 'Sp2g07860' => 'spa', 'Sp2g08430' => 'spa', 'Sp2g08440' => 'spa', 'Sp2g26200' => 'spa', 'Sp4g13170' => 'spa', 'Sp6g33840' => 'spa', 'SpUn1204_0010' => 'spa', 'TAR365G0908' => 'tar', 'TAR381G1270' => 'tar', 'TAR381G1651' => 'tar', 'TAR625G1131' => 'tar', 'TAR633G0962' => 'tar', 'TAR633G1729' => 'tar', 'TAR633G1864' => 'tar', 'TAR636G0221' => 'tar', 'TAR636G0314' => 'tar', 'TAR636G3202' => 'tar', 'THA.LOC104800805' => 'tha', 'THA.LOC104801096' => 'tha', 'THA.LOC104801555' => 'tha', 'THA.LOC104808491' => 'tha', 'THA.LOC104808595' => 'tha', 'THA.LOC104815985' => 'tha', 'THA.LOC104822250' => 'tha', 'THA.LOC104826071' => 'tha', 'Thecc.01G265200' => 'tca', 'Thecc.01G265300' => 'tca', 'Thecc.01G265700' => 'tca', 'Thecc.03G109100' => 'tca', 'Thecc.04G245900' => 'tca', 'Thecc.04G246000' => 'tca', 'Thhalv10003334m.g' => 'esa', 'Thhalv10005508m.g' => 'esa', 'Thhalv10005643m.g' => 'esa', 'Thhalv10007316m.g' => 'esa', 'Thhalv10009006m.g' => 'esa', 'Thhalv10009309m.g' => 'esa', 'Thhalv10014917m.g' => 'esa', 'Thhalv10014919m.g' => 'esa', 'Thhalv10015393m.g' => 'esa', 'Thhalv10016515m.g' => 'esa', 'Thhalv10029242m.g' => 'esa', 'TPR.G16654' => 'tpr', 'TPR.G20589' => 'tpr', 'TPR.G23029' => 'tpr', 'TPR.G27731' => 'tpr', 'TPR.G28889' => 'tpr', 'TPR.G28899' => 'tpr', 'TPR.G30846' => 'tpr', 'TPR.G5452' => 'tpr', 'TPR.G5713' => 'tpr', 'TPR.G9046' => 'tpr', 'TPR.G9061' => 'tpr', 'TWI09G1075' => 'twi', 'TWI12G0806' => 'twi', 'TWI18G0108' => 'twi', 'TWI53G1361' => 'twi', 'TWI73G0185' => 'twi', 'TWI73G0427' => 'twi', 'unitig_37.g12001' => 'ugi', 'unitig_747.g21660' => 'ugi', 'unitig_748.g7232' => 'ugi', 'unitig_748.g7315' => 'ugi', 'unitig_85.g27262' => 'ugi', 'unitig_92.g28220' => 'ugi', 'vmacro02632' => 'vma', 'vmacro08410' => 'vma', 'vmacro08411' => 'vma', 'vmacro15407' => 'vma', 'VMungo0251G3619' => 'vmu', 'VMungo0720G1204' => 'vmu', 'VMungo0720G1918' => 'vmu', 'VMungo0720G2387' => 'vmu', 'VMungo0720G2961' => 'vmu', 'VMungo1215G2154' => 'vmu', 'VMungo1383G2411' => 'vmu', 'Zm00001eb051130' => 'zma', 'Zm00001eb116830' => 'zma', 'Zm00001eb116850' => 'zma', 'Zm00001eb151740' => 'zma', 'Zm00001eb292360' => 'zma', 'Zm00001eb301640' => 'zma' ) $gf_id = 'HOM05D000856' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000856' ) $data_identifier = 'HOM05D000856' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 13, 'ath' => (int) 10, 'atr' => (int) 1, 'acertr' => (int) 8, 'cqu' => (int) 6, 'bca' => (int) 21, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 11, 'car' => (int) 9, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 8, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 5, 'fan' => (int) 16, 'fve' => (int) 6, 'gma' => (int) 11, 'ghi' => (int) 19, 'gra' => (int) 9, 'vvi' => (int) 7, 'han' => (int) 17, 'cav' => (int) 5, 'hma' => (int) 2, 'vpl' => (int) 2, 'sun' => (int) 7, 'lal' => (int) 9, 'lja' => (int) 5, 'lonja' => (int) 9, 'lsa' => (int) 5, 'mes' => (int) 8, 'mpo' => (int) 3, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 10, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 15, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 9, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 9, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 6, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 5, 'spa' => (int) 10, 'tar' => (int) 10, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 11, 'tpr' => (int) 11, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 4, 'vmu' => (int) 7, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb301640' $species_info = array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ) $local_species = 'hma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000856', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p00010' => 'bna', 'A03p04160' => 'bna', 'A03p17160' => 'bna', 'A04p23370' => 'bna', 'A05p14860' => 'bna', 'A08p37020' => 'bna', 'A09p08050' => 'bna', 'A09p66800' => 'bna', 'A09p67940' => 'bna', 'A10p02680' => 'bna', 'A10p05320' => 'bna', 'Aa31LG1G20560' => 'aar', 'Aa31LG1G20610' => 'aar', 'Aa31LG1G7810' => 'aar', 'Aa31LG5G3590' => 'aar', 'Aa31LG5G6140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3819' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4683' => 'aag', 'Actinidia04480' => 'ach', 'Actinidia05466' => 'ach', 'Actinidia08445' => 'ach', 'Actinidia21170' => 'ach', 'Actinidia24812' => 'ach', 'Actinidia24951' => 'ach', 'Actinidia40088' => 'ach', 'Ah.02g111660' => 'amhyb', 'Ah.11g048900' => 'amhyb', 'Ah.11g049910' => 'amhyb', 'AL1G13870' => 'aly', 'AL1G13880' => 'aly', 'AL1G16760' => 'aly', 'AL390U10020' => 'aly', 'AL4G25520' => 'aly', 'AL6G19890' => 'aly', 'AL6G19900' => 'aly', 'AL6G19910' => 'aly', 'AL8G40100' => 'aly', 'Aqoxy2G03562' => 'aox', 'Aqoxy5G00316' => 'aox', 'Aqoxy5G00926' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1628KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1H403S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2FU6SJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.882I6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8YRY2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YN1SN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AF70II' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZA8L1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F916KL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHRD8H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KTZ8QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S22EMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8M29T' => 'arhy', 'AT1G04270' => 'ath', 'AT1G04280' => 'ath', 'AT1G06750' => 'ath', 'AT1G33850' => 'ath', 'AT2G30630' => 'ath', 'AT5G09490' => 'ath', 'AT5G09500' => 'ath', 'AT5G09510' => 'ath', 'AT5G43640' => 'ath', 'AT5G63070' => 'ath', 'ATR0605G315' => 'atr', 'Atru.chr11.175' => 'acertr', 'Atru.chr11.653' => 'acertr', 'Atru.chr3.1616' => 'acertr', 'Atru.chr4.2230' => 'acertr', 'Atru.chr4.2232' => 'acertr', 'Atru.chr5.1598' => 'acertr', 'Atru.chr5.1600' => 'acertr', 'Atru.chr5.2188' => 'acertr', 'AUR62008326' => 'cqu', 'AUR62011922' => 'cqu', 'AUR62011924' => 'cqu', 'AUR62021771' => 'cqu', 'AUR62032237' => 'cqu', 'AUR62032240' => 'cqu', 'BcaB01g05572' => 'bca', 'BcaB02g10337' => 'bca', 'BcaB04g19944' => 'bca', 'BcaB05g21548' => 'bca', 'BcaB05g21549' => 'bca', 'BcaB05g23227' => 'bca', 'BcaB06g26256' => 'bca', 'BcaB06g26257' => 'bca', 'BcaB06g28379' => 'bca', 'BcaC02g11159' => 'bca', 'BcaC03g13258' => 'bca', 'BcaC03g13259' => 'bca', 'BcaC05g24456' => 'bca', 'BcaC05g24457' => 'bca', 'BcaC07g36922' => 'bca', 'BcaC07g36923' => 'bca', 'BcaC07g42050' => 'bca', 'BcaC07g42176' => 'bca', 'BcaC07g42195' => 'bca', 'BcaC07g42196' => 'bca', 'BcaNung06674' => 'bca', 'BolC2t06351H' => 'bol', 'BolC2t06352H' => 'bol', 'BolC3t12993H' => 'bol', 'BolC4t23525H' => 'bol', 'BolC4t27475H' => 'bol', 'BolC5t29025H' => 'bol', 'BolC5t29026H' => 'bol', 'BolC8t46898H' => 'bol', 'BolC8t46899H' => 'bol', 'BolC8t52630H' => 'bol', 'BolC8t52765H' => 'bol', 'BolC9t53824H' => 'bol', 'BraA03t09760Z' => 'bra', 'BraA03t10990Z' => 'bra', 'BraA05t20413Z' => 'bra', 'BraA08t35602Z' => 'bra', 'BraA09t36458Z' => 'bra', 'BraA09t42018Z' => 'bra', 'BraA09t42129Z' => 'bra', 'BraA10t42536Z' => 'bra', 'BraA10t42537Z' => 'bra', 'C01p10690' => 'bna', 'C02p03890' => 'bna', 'C02p03900' => 'bna', 'C03p04620' => 'bna', 'C04p19870' => 'bna', 'C04p59670' => 'bna', 'C05p02460' => 'bna', 'C05p02470' => 'bna', 'C08p00980' => 'bna', 'C08p00990' => 'bna', 'C08p51030' => 'bna', 'C08p52360' => 'bna', 'C09p09120' => 'bna', 'CAN.G19.15' => 'can', 'CAN.G251.10' => 'can', 'CAN.G251.9' => 'can', 'CAN.G398.24' => 'can', 'CAN.G410.32' => 'can', 'CAN.G881.2' => 'can', 'CANSAT01G3025' => 'cansat', 'CANSAT78G1211' => 'cansat', 'CANSAT78G1218' => 'cansat', 'CANSAT78G1521' => 'cansat', 'CANSAT78G1670' => 'cansat', 'CARHR003600' => 'chi', 'CARHR003610' => 'chi', 'CARHR006290' => 'chi', 'CARHR006430' => 'chi', 'CARHR124110' => 'chi', 'CARHR203870' => 'chi', 'CARHR203880' => 'chi', 'CARHR203890' => 'chi', 'CARHR276880' => 'chi', 'Carub.0001s0346' => 'cru', 'Carub.0001s0347' => 'cru', 'Carub.0001s0607' => 'cru', 'Carub.0003s2768' => 'cru', 'Carub.0003s2769' => 'cru', 'Carub.0004s1178' => 'cru', 'Carub.0006s0806' => 'cru', 'Carub.0006s0807' => 'cru', 'Carub.0006s0808' => 'cru', 'Carub.0008s0501' => 'cru', 'Carub.0008s2379' => 'cru', 'Ca_08655_v3' => 'car', 'Ca_08922_v3' => 'car', 'Ca_08923_v3' => 'car', 'Ca_09119_v3' => 'car', 'Ca_09703_v3' => 'car', 'Ca_09705_v3' => 'car', 'Ca_09835_v3' => 'car', 'Ca_26403_v3' => 'car', 'Ca_30719_v3' => 'car', 'CBR_g17958' => 'cbr', 'CBR_g40516' => 'cbr', 'Cc00_g05350' => 'ccan', 'Cc01_g18690' => 'ccan', 'Cc03_g04830' => 'ccan', 'Cc03_g04850' => 'ccan', 'CDE02G4469' => 'cde', 'CDE06G0883' => 'cde', 'CDE06G1295' => 'cde', 'CDE06G1390' => 'cde', 'CDE07G0584' => 'cde', 'CDE07G1084' => 'cde', 'CDE08G1259' => 'cde', 'Cfa002341' => 'cfa', 'Cfa024337' => 'cfa', 'Ciclev10004749m.g' => 'ccl', 'Ciclev10006127m.g' => 'ccl', 'Ciclev10019720m.g' => 'ccl', 'Ciclev10022652m.g' => 'ccl', 'CiPaw.01G190400' => 'cil', 'CiPaw.01G190500' => 'cil', 'CiPaw.02G116400' => 'cil', 'CiPaw.02G116500' => 'cil', 'CiPaw.04G183000' => 'cil', 'CiPaw.04G183300' => 'cil', 'ClCG05G004610' => 'cla', 'ClCG05G004620' => 'cla', 'ClCG06G006730' => 'cla', 'ClCG06G006740' => 'cla', 'ClCG11G003690' => 'cla', 'COL.COLO4_08276' => 'col', 'COL.COLO4_08277' => 'col', 'COL.COLO4_15787' => 'col', 'COL.COLO4_15789' => 'col', 'Cpa.g.c44815' => 'cpa', 'Cpa.g.sc52.144' => 'cpa', 'Cpa.g.sc58.46' => 'cpa', 'Cpa.g.sc58.47' => 'cpa', 'Cre08.g360900' => 'cre', 'CsaV3_2G013030' => 'csa', 'CsaV3_2G013050' => 'csa', 'CsaV3_2G015620' => 'csa', 'CsaV3_3G012590' => 'csa', 'CsaV3_3G012600' => 'csa', 'CSS0001641' => 'camsi', 'CSS0008310' => 'camsi', 'CSS0013011' => 'camsi', 'CSS0017147' => 'camsi', 'CSS0022970' => 'camsi', 'CSS0025655' => 'camsi', 'CSS0028665' => 'camsi', 'CSS0029117' => 'camsi', 'CSS0032024' => 'camsi', 'CSS0039681' => 'camsi', 'CSS0046516' => 'camsi', 'CSS0050307' => 'camsi', 'DCAR_005871' => 'dca', 'DCAR_007342' => 'dca', 'DCAR_024228' => 'dca', 'DCAR_027277' => 'dca', 'DCAR_030718' => 'dca', 'Dinv20287' => 'din', 'Dinv22461' => 'din', 'Dinv22464' => 'din', 'Dinv29912' => 'din', 'Dinv29913' => 'din', 'Dinv34580' => 'din', 'Dinv34582' => 'din', 'Dinv44632' => 'din', 'Duzib052G0266' => 'dzi', 'Duzib133G0907' => 'dzi', 'Duzib133G1034' => 'dzi', 'Duzib138G0207' => 'dzi', 'Duzib138G0491' => 'dzi', 'Duzib151G0812' => 'dzi', 'Duzib151G1166' => 'dzi', 'Duzib168G0192' => 'dzi', 'Duzib211G0077' => 'dzi', 'Duzib212G0429' => 'dzi', 'Duzib212G0472' => 'dzi', 'ECA233G2617' => 'eca', 'ECA236G4188' => 'eca', 'ECA240G0936' => 'eca', 'ECA240G1129' => 'eca', 'ECA247G0623' => 'eca', 'EL10Ac5g10451' => 'bvu', 'EL10Ac5g10453' => 'bvu', 'EL10Ac5g10894' => 'bvu', 'Eucgr.H00192' => 'egr', 'Eucgr.H00193' => 'egr', 'Eucgr.H00194' => 'egr', 'Eucgr.J01562' => 'egr', 'Eucgr.K03301' => 'egr', 'FAN02G0632' => 'fan', 'FAN05G5378' => 'fan', 'FAN09G3247' => 'fan', 'FAN12G0435' => 'fan', 'FAN12G2426' => 'fan', 'FAN14G1707' => 'fan', 'FAN14G4725' => 'fan', 'FAN15G2071' => 'fan', 'FAN17G3065' => 'fan', 'FAN19G1376' => 'fan', 'FAN20G0354' => 'fan', 'FAN20G2429' => 'fan', 'FAN20G2658' => 'fan', 'FAN24G2343' => 'fan', 'FAN27G2362' => 'fan', 'FAN28G1765' => 'fan', 'FvH4_1g16020' => 'fve', 'FvH4_2g04890' => 'fve', 'FvH4_2g22270' => 'fve', 'FvH4_4g02630' => 'fve', 'FvH4_4g02640' => 'fve', 'FvH4_6g02650' => 'fve', 'Glyma.02G140600' => 'gma', 'Glyma.03G159900' => 'gma', 'Glyma.05G234800' => 'gma', 'Glyma.07G269600' => 'gma', 'Glyma.08G042300' => 'gma', 'Glyma.10G033500' => 'gma', 'Glyma.10G185200' => 'gma', 'Glyma.17G004300' => 'gma', 'Glyma.19G161900' => 'gma', 'Glyma.20G205100' => 'gma', 'Glyma.20G205200' => 'gma', 'Gohir.A01G139101' => 'ghi', 'Gohir.A02G035600' => 'ghi', 'Gohir.A02G117901' => 'ghi', 'Gohir.A07G210100' => 'ghi', 'Gohir.A07G210200' => 'ghi', 'Gohir.A08G061100' => 'ghi', 'Gohir.A09G223000' => 'ghi', 'Gohir.A09G223100' => 'ghi', 'Gohir.A10G113900' => 'ghi', 'Gohir.A10G114000' => 'ghi', 'Gohir.D02G042300' => 'ghi', 'Gohir.D07G216100' => 'ghi', 'Gohir.D07G216200' => 'ghi', 'Gohir.D08G070400' => 'ghi', 'Gohir.D09G225000' => 'ghi', 'Gohir.D09G225100' => 'ghi', 'Gohir.D10G152300' => 'ghi', 'Gohir.D10G153200' => 'ghi', 'Gohir.D11G133701' => 'ghi', 'Gorai.004G074100' => 'gra', 'Gorai.005G046800' => 'gra', 'Gorai.006G246500' => 'gra', 'Gorai.006G246600' => 'gra', 'Gorai.007G142900' => 'gra', 'Gorai.011G171000' => 'gra', 'Gorai.011G171100' => 'gra', 'Gorai.013G104300' => 'gra', 'Gorai.013G104400' => 'gra', 'GSVIVG01000754001' => 'vvi', 'GSVIVG01000756001' => 'vvi', 'GSVIVG01010903001' => 'vvi', 'GSVIVG01017623001' => 'vvi', 'GSVIVG01018113001' => 'vvi', 'GSVIVG01018116001' => 'vvi', 'GSVIVG01018118001' => 'vvi', 'HanXRQChr03g0076211' => 'han', 'HanXRQChr03g0092431' => 'han', 'HanXRQChr03g0092441' => 'han', 'HanXRQChr03g0092591' => 'han', 'HanXRQChr03g0092671' => 'han', 'HanXRQChr03g0092681' => 'han', 'HanXRQChr03g0092691' => 'han', 'HanXRQChr03g0092701' => 'han', 'HanXRQChr03g0092721' => 'han', 'HanXRQChr03g0092731' => 'han', 'HanXRQChr04g0113681' => 'han', 'HanXRQChr10g0281371' => 'han', 'HanXRQChr11g0337141' => 'han', 'HanXRQChr13g0424521' => 'han', 'HanXRQChr13g0424531' => 'han', 'HanXRQChr13g0424541' => 'han', 'HanXRQChr16g0498221' => 'han', 'Haze_04377' => 'cav', 'Haze_11298' => 'cav', 'Haze_24547' => 'cav', 'Haze_24550' => 'cav', 'Haze_26587' => 'cav', 'Hma1.2p1_0650F.1_g195410' => 'hma', 'Hma1.2p1_0893F.1_g233470' => 'hma', 'HPP92_006508' => 'vpl', 'HPP92_024780' => 'vpl', 'Hund02688' => 'sun', 'Hund09380' => 'sun', 'Hund09381' => 'sun', 'Hund09832' => 'sun', 'Hund09833' => 'sun', 'Hund11351' => 'sun', 'Hund11513' => 'sun', 'Lalb_Chr06g0162591' => 'lal', 'Lalb_Chr06g0162601' => 'lal', 'Lalb_Chr06g0169321' => 'lal', 'Lalb_Chr09g0330951' => 'lal', 'Lalb_Chr16g0387631' => 'lal', 'Lalb_Chr21g0306241' => 'lal', 'Lalb_Chr25g0290051' => 'lal', 'Lalb_Chr25g0290061' => 'lal', 'Lalb_Chr25g0290071' => 'lal', 'Lj1g0003876' => 'lja', 'Lj1P1207T36' => 'lonja', 'Lj2C1156G12' => 'lonja', 'Lj3A793G39' => 'lonja', 'Lj3C580G2' => 'lonja', 'Lj3C780G2' => 'lonja', 'Lj3C780T4' => 'lonja', 'Lj3C793G9' => 'lonja', 'Lj4g0012960' => 'lja', 'Lj5g0021252' => 'lja', 'Lj5g0021484' => 'lja', 'Lj5g0024528' => 'lja', 'Lj6A399T12' => 'lonja', 'Lj6A656G65' => 'lonja', 'Lsat_1_v5_gn_3_125500' => 'lsa', 'Lsat_1_v5_gn_3_125540' => 'lsa', 'Lsat_1_v5_gn_5_72701' => 'lsa', 'Lsat_1_v5_gn_8_91560' => 'lsa', 'Lsat_1_v5_gn_9_9640' => 'lsa', 'Manes.01G200600' => 'mes', 'Manes.01G200700' => 'mes', 'Manes.03G168900' => 'mes', 'Manes.03G169000' => 'mes', 'Manes.05G085801' => 'mes', 'Manes.05G086200' => 'mes', 'Manes.15G036700' => 'mes', 'Manes.15G036900' => 'mes', 'Mapoly0004s0172' => 'mpo', 'Mapoly0023s0001' => 'mpo', 'Mapoly0142s0012' => 'mpo', 'MBI01_g32854_MAGBIO' => 'mbi', 'MBI11_g24427_MAGBIO' => 'mbi', 'MBI11_g47319_MAGBIO' => 'mbi', 'MCO01G433' => 'mco', 'MD00G1187800' => 'mdo', 'MD04G1226500' => 'mdo', 'MD05G1203900' => 'mdo', 'MD10G1191100' => 'mdo', 'MD12G1243500' => 'mdo', 'MD13G1207000' => 'mdo', 'MD13G1207100' => 'mdo', 'MD16G1208600' => 'mdo', 'Medtr1g050352' => 'mtr', 'Medtr1g070385' => 'mtr', 'Medtr1g070450' => 'mtr', 'Medtr1g075200' => 'mtr', 'Medtr1g075250' => 'mtr', 'Medtr1g075260' => 'mtr', 'Medtr1g475250' => 'mtr', 'Medtr4g075450' => 'mtr', 'Medtr7g096300' => 'mtr', 'Medtr8g105110' => 'mtr', 'MELO3C006470.2' => 'cme', 'MELO3C006471.2' => 'cme', 'MELO3C020772.2' => 'cme', 'MELO3C026780.2' => 'cme', 'MELO3C026781.2' => 'cme', 'Migut.D00390' => 'egut', 'Migut.G00435' => 'egut', 'Migut.G00436' => 'egut', 'Migut.G00718' => 'egut', 'MSTRG.21891' => 'ama', 'MSTRG.26910' => 'ama', 'MSTRG.4099' => 'ama', 'MSTRG.9925' => 'ama', 'Nitab4.5_0000165g0010' => 'nta', 'Nitab4.5_0000209g0180' => 'nta', 'Nitab4.5_0000244g0440' => 'nta', 'Nitab4.5_0000525g0220' => 'nta', 'Nitab4.5_0001597g0020' => 'nta', 'Nitab4.5_0001878g0040' => 'nta', 'Nitab4.5_0001878g0060' => 'nta', 'Nitab4.5_0002838g0100' => 'nta', 'Nitab4.5_0002838g0120' => 'nta', 'Nitab4.5_0004798g0030' => 'nta', 'Nitab4.5_0005420g0010' => 'nta', 'Nitab4.5_0005507g0010' => 'nta', 'Nitab4.5_0005574g0020' => 'nta', 'Nitab4.5_0005838g0010' => 'nta', 'Nitab4.5_0010580g0020' => 'nta', 'Nn1g02599' => 'nnu', 'Nn1g02608' => 'nnu', 'Nn3g17742' => 'nnu', 'Nn3g19534' => 'nnu', 'Nn3g19535' => 'nnu', 'Oeu008790.1' => 'oeu', 'Oeu008792.1' => 'oeu', 'Oeu032590.1' => 'oeu', 'Oeu035349.1' => 'oeu', 'Oeu049791.1' => 'oeu', 'Os01g0774500' => 'osa', 'Os03g0628800' => 'osa', 'Os03g0798600' => 'osa', 'Os05g0508800' => 'osa', 'Peaxi162Scf00036g02018' => 'pax', 'Peaxi162Scf00578g00032' => 'pax', 'Peaxi162Scf00578g00317' => 'pax', 'Peaxi162Scf00785g00114' => 'pax', 'Peaxi162Scf00813g00119' => 'pax', 'Peaxi162Scf00906g00227' => 'pax', 'PGR004G0875' => 'pgr', 'PGR004G2424' => 'pgr', 'PGR031G1239' => 'pgr', 'PGR031G2474' => 'pgr', 'PGR044G0423' => 'pgr', 'PGSC0003DMG400001128' => 'stu', 'PGSC0003DMG400007336' => 'stu', 'PGSC0003DMG400016318' => 'stu', 'PGSC0003DMG400016319' => 'stu', 'PGSC0003DMG400018074' => 'stu', 'Phvul.001G157700' => 'pvu', 'Phvul.002G148550' => 'pvu', 'Phvul.002G320200' => 'pvu', 'Phvul.003G089200' => 'pvu', 'Phvul.007G126000' => 'pvu', 'Phvul.007G126100' => 'pvu', 'Phvul.007G178000' => 'pvu', 'Phvul.007G178200' => 'pvu', 'Potri.002G043000' => 'ptr', 'Potri.002G043200' => 'ptr', 'Potri.003G123750' => 'ptr', 'Potri.005G055401' => 'ptr', 'Potri.005G219700' => 'ptr', 'Potri.005G220000' => 'ptr', 'Potri.008G161901' => 'ptr', 'Potri.008G162000' => 'ptr', 'Potri.008G162400' => 'ptr', 'Potri.010G076900' => 'ptr', 'Pp3c12_9180' => 'ppa', 'Pp3c13_19770' => 'ppa', 'Pp3c14_22950' => 'ppa', 'Pp3c16_12160' => 'ppa', 'Pp3c27_7820' => 'ppa', 'Pp3c2_3490' => 'ppa', 'Pp3c3_23700' => 'ppa', 'Pp3c3_36520' => 'ppa', 'Pp3c4_15250' => 'ppa', 'PRCOL_00007002' => 'pco', 'Prupe.1G030600' => 'ppe', 'Prupe.1G030700' => 'ppe', 'Prupe.6G345200' => 'ppe', 'Prupe.8G230300' => 'ppe', 'Prupe.8G230500' => 'ppe', 'Psat3g059600' => 'psa', 'Psat5g200920' => 'psa', 'Psat6g056440' => 'psa', 'Psat6g057360' => 'psa', 'Psat6g134120' => 'psa', 'Psat6g134160' => 'psa', 'Psat7g008640' => 'psa', 'Psat7g185240' => 'psa', 'PSO017G1330' => 'pso', 'PSO063G6097' => 'pso', 'PSO170G0835' => 'pso', 'PSO170G2499' => 'pso', 'PSO210G5058' => 'pso', 'PSO210G6154' => 'pso', 'PSO585G0031' => 'pso', 'PSO832G0264' => 'pso', 'PSO832G4288' => 'pso', 'QL03p027355' => 'qlo', 'QL03p027430' => 'qlo', 'QL04p081380' => 'qlo', 'QL06p015642' => 'qlo', 'QL06p015650' => 'qlo', 'QL06p015686' => 'qlo', 'QL12p042927' => 'qlo', 'QL93p1863_0035' => 'qlo', 'RcHm_v2.0_Chr3g0450581' => 'rch', 'RcHm_v2.0_Chr4g0390371' => 'rch', 'RcHm_v2.0_Chr4g0390381' => 'rch', 'RcHm_v2.0_Chr4g0390491' => 'rch', 'RcHm_v2.0_Chr4g0390501' => 'rch', 'RcHm_v2.0_Chr6g0289231' => 'rch', 'Rhsim04G0190400' => 'rsi', 'Rhsim04G0190500' => 'rsi', 'Rhsim04G0190600' => 'rsi', 'Rhsim13G0031400' => 'rsi', 'Rhsim13G0165600' => 'rsi', 'RhsimUnG0114600' => 'rsi', 'RhsimUnG0114700' => 'rsi', 'Sabra02G0034800' => 'sbr', 'Sabra02G0035100' => 'sbr', 'Sabra05G0168600' => 'sbr', 'Sabra05G0168800' => 'sbr', 'Sabra08G0123700' => 'sbr', 'Sabra10G0031900' => 'sbr', 'Sabra13G0039000' => 'sbr', 'SalBow2G0782' => 'sbo', 'SalBow2G1403' => 'sbo', 'SalBow4G0074' => 'sbo', 'SalBow4G2635' => 'sbo', 'SalBow5G3010' => 'sbo', 'Sc05g0000870' => 'sci', 'Sc05g0000890' => 'sci', 'Sc13g0005000' => 'sci', 'Sc13g0005030' => 'sci', 'Sc19g0003790' => 'sci', 'Sc19g0003800' => 'sci', 'Sed0003467' => 'sed', 'Sed0009355' => 'sed', 'Sed0009894' => 'sed', 'Sed0011972' => 'sed', 'Sed0021483' => 'sed', 'Sed0021750' => 'sed', 'Sed0026279' => 'sed', 'SEGI_05312' => 'sgi', 'SEGI_10112' => 'sgi', 'SEGI_15835' => 'sgi', 'SEGI_30386' => 'sgi', 'SEGI_34122' => 'sgi', 'SEGI_35063' => 'sgi', 'SGA_v2.0_scaffold101G29794' => 'sas', 'SGA_v2.0_scaffold1G00573' => 'sas', 'SGA_v2.0_scaffold79G25637' => 'sas', 'SGA_v2.0_scaffold88G27283' => 'sas', 'SGA_v2.0_scaffold88G27285' => 'sas', 'SGA_v2.0_scaffold88G27331' => 'sas', 'SHI09937' => 'shi', 'SMO119G0302' => 'smo', 'SMO137G0231' => 'smo', 'SMO367G1151' => 'smo', 'Solyc02g082000.3' => 'sly', 'Solyc06g031670.3' => 'sly', 'Solyc06g053810.3' => 'sly', 'Solyc07g025457.1' => 'sly', 'Solyc08g059740.1' => 'sly', 'Solyc08g059750.3' => 'sly', 'Solyc09g083370.3' => 'sly', 'Solyc12g038950.3' => 'sly', 'Sopen02g026630' => 'spe', 'Sopen06g018930' => 'spe', 'Sopen06g018940' => 'spe', 'Sopen08g009460' => 'spe', 'Sopen09g032290' => 'spe', 'Sp1g03080' => 'spa', 'Sp1g03090' => 'spa', 'Sp1g05480' => 'spa', 'Sp2g07860' => 'spa', 'Sp2g08430' => 'spa', 'Sp2g08440' => 'spa', 'Sp2g26200' => 'spa', 'Sp4g13170' => 'spa', 'Sp6g33840' => 'spa', 'SpUn1204_0010' => 'spa', 'TAR365G0908' => 'tar', 'TAR381G1270' => 'tar', 'TAR381G1651' => 'tar', 'TAR625G1131' => 'tar', 'TAR633G0962' => 'tar', 'TAR633G1729' => 'tar', 'TAR633G1864' => 'tar', 'TAR636G0221' => 'tar', 'TAR636G0314' => 'tar', 'TAR636G3202' => 'tar', 'THA.LOC104800805' => 'tha', 'THA.LOC104801096' => 'tha', 'THA.LOC104801555' => 'tha', 'THA.LOC104808491' => 'tha', 'THA.LOC104808595' => 'tha', 'THA.LOC104815985' => 'tha', 'THA.LOC104822250' => 'tha', 'THA.LOC104826071' => 'tha', 'Thecc.01G265200' => 'tca', 'Thecc.01G265300' => 'tca', 'Thecc.01G265700' => 'tca', 'Thecc.03G109100' => 'tca', 'Thecc.04G245900' => 'tca', 'Thecc.04G246000' => 'tca', 'Thhalv10003334m.g' => 'esa', 'Thhalv10005508m.g' => 'esa', 'Thhalv10005643m.g' => 'esa', 'Thhalv10007316m.g' => 'esa', 'Thhalv10009006m.g' => 'esa', 'Thhalv10009309m.g' => 'esa', 'Thhalv10014917m.g' => 'esa', 'Thhalv10014919m.g' => 'esa', 'Thhalv10015393m.g' => 'esa', 'Thhalv10016515m.g' => 'esa', 'Thhalv10029242m.g' => 'esa', 'TPR.G16654' => 'tpr', 'TPR.G20589' => 'tpr', 'TPR.G23029' => 'tpr', 'TPR.G27731' => 'tpr', 'TPR.G28889' => 'tpr', 'TPR.G28899' => 'tpr', 'TPR.G30846' => 'tpr', 'TPR.G5452' => 'tpr', 'TPR.G5713' => 'tpr', 'TPR.G9046' => 'tpr', 'TPR.G9061' => 'tpr', 'TWI09G1075' => 'twi', 'TWI12G0806' => 'twi', 'TWI18G0108' => 'twi', 'TWI53G1361' => 'twi', 'TWI73G0185' => 'twi', 'TWI73G0427' => 'twi', 'unitig_37.g12001' => 'ugi', 'unitig_747.g21660' => 'ugi', 'unitig_748.g7232' => 'ugi', 'unitig_748.g7315' => 'ugi', 'unitig_85.g27262' => 'ugi', 'unitig_92.g28220' => 'ugi', 'vmacro02632' => 'vma', 'vmacro08410' => 'vma', 'vmacro08411' => 'vma', 'vmacro15407' => 'vma', 'VMungo0251G3619' => 'vmu', 'VMungo0720G1204' => 'vmu', 'VMungo0720G1918' => 'vmu', 'VMungo0720G2387' => 'vmu', 'VMungo0720G2961' => 'vmu', 'VMungo1215G2154' => 'vmu', 'VMungo1383G2411' => 'vmu', 'Zm00001eb051130' => 'zma', 'Zm00001eb116830' => 'zma', 'Zm00001eb116850' => 'zma', 'Zm00001eb151740' => 'zma', 'Zm00001eb292360' => 'zma', 'Zm00001eb301640' => 'zma' ), 'gf_id' => 'HOM05D000856', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000856' ), 'data_identifier' => 'HOM05D000856', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000856', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p00010' => 'bna', 'A03p04160' => 'bna', 'A03p17160' => 'bna', 'A04p23370' => 'bna', 'A05p14860' => 'bna', 'A08p37020' => 'bna', 'A09p08050' => 'bna', 'A09p66800' => 'bna', 'A09p67940' => 'bna', 'A10p02680' => 'bna', 'A10p05320' => 'bna', 'Aa31LG1G20560' => 'aar', 'Aa31LG1G20610' => 'aar', 'Aa31LG1G7810' => 'aar', 'Aa31LG5G3590' => 'aar', 'Aa31LG5G6140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3819' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4683' => 'aag', 'Actinidia04480' => 'ach', 'Actinidia05466' => 'ach', 'Actinidia08445' => 'ach', 'Actinidia21170' => 'ach', 'Actinidia24812' => 'ach', 'Actinidia24951' => 'ach', 'Actinidia40088' => 'ach', 'Ah.02g111660' => 'amhyb', 'Ah.11g048900' => 'amhyb', 'Ah.11g049910' => 'amhyb', 'AL1G13870' => 'aly', 'AL1G13880' => 'aly', 'AL1G16760' => 'aly', 'AL390U10020' => 'aly', 'AL4G25520' => 'aly', 'AL6G19890' => 'aly', 'AL6G19900' => 'aly', 'AL6G19910' => 'aly', 'AL8G40100' => 'aly', 'Aqoxy2G03562' => 'aox', 'Aqoxy5G00316' => 'aox', 'Aqoxy5G00926' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1628KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1H403S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2FU6SJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.882I6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8YRY2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YN1SN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AF70II' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZA8L1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F916KL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHRD8H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KTZ8QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S22EMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8M29T' => 'arhy', 'AT1G04270' => 'ath', 'AT1G04280' => 'ath', 'AT1G06750' => 'ath', 'AT1G33850' => 'ath', 'AT2G30630' => 'ath', 'AT5G09490' => 'ath', 'AT5G09500' => 'ath', 'AT5G09510' => 'ath', 'AT5G43640' => 'ath', 'AT5G63070' => 'ath', 'ATR0605G315' => 'atr', 'Atru.chr11.175' => 'acertr', 'Atru.chr11.653' => 'acertr', 'Atru.chr3.1616' => 'acertr', 'Atru.chr4.2230' => 'acertr', 'Atru.chr4.2232' => 'acertr', 'Atru.chr5.1598' => 'acertr', 'Atru.chr5.1600' => 'acertr', 'Atru.chr5.2188' => 'acertr', 'AUR62008326' => 'cqu', 'AUR62011922' => 'cqu', 'AUR62011924' => 'cqu', 'AUR62021771' => 'cqu', 'AUR62032237' => 'cqu', 'AUR62032240' => 'cqu', 'BcaB01g05572' => 'bca', 'BcaB02g10337' => 'bca', 'BcaB04g19944' => 'bca', 'BcaB05g21548' => 'bca', 'BcaB05g21549' => 'bca', 'BcaB05g23227' => 'bca', 'BcaB06g26256' => 'bca', 'BcaB06g26257' => 'bca', 'BcaB06g28379' => 'bca', 'BcaC02g11159' => 'bca', 'BcaC03g13258' => 'bca', 'BcaC03g13259' => 'bca', 'BcaC05g24456' => 'bca', 'BcaC05g24457' => 'bca', 'BcaC07g36922' => 'bca', 'BcaC07g36923' => 'bca', 'BcaC07g42050' => 'bca', 'BcaC07g42176' => 'bca', 'BcaC07g42195' => 'bca', 'BcaC07g42196' => 'bca', 'BcaNung06674' => 'bca', 'BolC2t06351H' => 'bol', 'BolC2t06352H' => 'bol', 'BolC3t12993H' => 'bol', 'BolC4t23525H' => 'bol', 'BolC4t27475H' => 'bol', 'BolC5t29025H' => 'bol', 'BolC5t29026H' => 'bol', 'BolC8t46898H' => 'bol', 'BolC8t46899H' => 'bol', 'BolC8t52630H' => 'bol', 'BolC8t52765H' => 'bol', 'BolC9t53824H' => 'bol', 'BraA03t09760Z' => 'bra', 'BraA03t10990Z' => 'bra', 'BraA05t20413Z' => 'bra', 'BraA08t35602Z' => 'bra', 'BraA09t36458Z' => 'bra', 'BraA09t42018Z' => 'bra', 'BraA09t42129Z' => 'bra', 'BraA10t42536Z' => 'bra', 'BraA10t42537Z' => 'bra', 'C01p10690' => 'bna', 'C02p03890' => 'bna', 'C02p03900' => 'bna', 'C03p04620' => 'bna', 'C04p19870' => 'bna', 'C04p59670' => 'bna', 'C05p02460' => 'bna', 'C05p02470' => 'bna', 'C08p00980' => 'bna', 'C08p00990' => 'bna', 'C08p51030' => 'bna', 'C08p52360' => 'bna', 'C09p09120' => 'bna', 'CAN.G19.15' => 'can', 'CAN.G251.10' => 'can', 'CAN.G251.9' => 'can', 'CAN.G398.24' => 'can', 'CAN.G410.32' => 'can', 'CAN.G881.2' => 'can', 'CANSAT01G3025' => 'cansat', 'CANSAT78G1211' => 'cansat', 'CANSAT78G1218' => 'cansat', 'CANSAT78G1521' => 'cansat', 'CANSAT78G1670' => 'cansat', 'CARHR003600' => 'chi', 'CARHR003610' => 'chi', 'CARHR006290' => 'chi', 'CARHR006430' => 'chi', 'CARHR124110' => 'chi', 'CARHR203870' => 'chi', 'CARHR203880' => 'chi', 'CARHR203890' => 'chi', 'CARHR276880' => 'chi', 'Carub.0001s0346' => 'cru', 'Carub.0001s0347' => 'cru', 'Carub.0001s0607' => 'cru', 'Carub.0003s2768' => 'cru', 'Carub.0003s2769' => 'cru', 'Carub.0004s1178' => 'cru', 'Carub.0006s0806' => 'cru', 'Carub.0006s0807' => 'cru', 'Carub.0006s0808' => 'cru', 'Carub.0008s0501' => 'cru', 'Carub.0008s2379' => 'cru', 'Ca_08655_v3' => 'car', 'Ca_08922_v3' => 'car', 'Ca_08923_v3' => 'car', 'Ca_09119_v3' => 'car', 'Ca_09703_v3' => 'car', 'Ca_09705_v3' => 'car', 'Ca_09835_v3' => 'car', 'Ca_26403_v3' => 'car', 'Ca_30719_v3' => 'car', 'CBR_g17958' => 'cbr', 'CBR_g40516' => 'cbr', 'Cc00_g05350' => 'ccan', 'Cc01_g18690' => 'ccan', 'Cc03_g04830' => 'ccan', 'Cc03_g04850' => 'ccan', 'CDE02G4469' => 'cde', 'CDE06G0883' => 'cde', 'CDE06G1295' => 'cde', 'CDE06G1390' => 'cde', 'CDE07G0584' => 'cde', 'CDE07G1084' => 'cde', 'CDE08G1259' => 'cde', 'Cfa002341' => 'cfa', 'Cfa024337' => 'cfa', 'Ciclev10004749m.g' => 'ccl', 'Ciclev10006127m.g' => 'ccl', 'Ciclev10019720m.g' => 'ccl', 'Ciclev10022652m.g' => 'ccl', 'CiPaw.01G190400' => 'cil', 'CiPaw.01G190500' => 'cil', 'CiPaw.02G116400' => 'cil', 'CiPaw.02G116500' => 'cil', 'CiPaw.04G183000' => 'cil', 'CiPaw.04G183300' => 'cil', 'ClCG05G004610' => 'cla', 'ClCG05G004620' => 'cla', 'ClCG06G006730' => 'cla', 'ClCG06G006740' => 'cla', 'ClCG11G003690' => 'cla', 'COL.COLO4_08276' => 'col', 'COL.COLO4_08277' => 'col', 'COL.COLO4_15787' => 'col', 'COL.COLO4_15789' => 'col', 'Cpa.g.c44815' => 'cpa', 'Cpa.g.sc52.144' => 'cpa', 'Cpa.g.sc58.46' => 'cpa', 'Cpa.g.sc58.47' => 'cpa', 'Cre08.g360900' => 'cre', 'CsaV3_2G013030' => 'csa', 'CsaV3_2G013050' => 'csa', 'CsaV3_2G015620' => 'csa', 'CsaV3_3G012590' => 'csa', 'CsaV3_3G012600' => 'csa', 'CSS0001641' => 'camsi', 'CSS0008310' => 'camsi', 'CSS0013011' => 'camsi', 'CSS0017147' => 'camsi', 'CSS0022970' => 'camsi', 'CSS0025655' => 'camsi', 'CSS0028665' => 'camsi', 'CSS0029117' => 'camsi', 'CSS0032024' => 'camsi', 'CSS0039681' => 'camsi', 'CSS0046516' => 'camsi', 'CSS0050307' => 'camsi', 'DCAR_005871' => 'dca', 'DCAR_007342' => 'dca', 'DCAR_024228' => 'dca', 'DCAR_027277' => 'dca', 'DCAR_030718' => 'dca', 'Dinv20287' => 'din', 'Dinv22461' => 'din', 'Dinv22464' => 'din', 'Dinv29912' => 'din', 'Dinv29913' => 'din', 'Dinv34580' => 'din', 'Dinv34582' => 'din', 'Dinv44632' => 'din', 'Duzib052G0266' => 'dzi', 'Duzib133G0907' => 'dzi', 'Duzib133G1034' => 'dzi', 'Duzib138G0207' => 'dzi', 'Duzib138G0491' => 'dzi', 'Duzib151G0812' => 'dzi', 'Duzib151G1166' => 'dzi', 'Duzib168G0192' => 'dzi', 'Duzib211G0077' => 'dzi', 'Duzib212G0429' => 'dzi', 'Duzib212G0472' => 'dzi', 'ECA233G2617' => 'eca', 'ECA236G4188' => 'eca', 'ECA240G0936' => 'eca', 'ECA240G1129' => 'eca', 'ECA247G0623' => 'eca', 'EL10Ac5g10451' => 'bvu', 'EL10Ac5g10453' => 'bvu', 'EL10Ac5g10894' => 'bvu', 'Eucgr.H00192' => 'egr', 'Eucgr.H00193' => 'egr', 'Eucgr.H00194' => 'egr', 'Eucgr.J01562' => 'egr', 'Eucgr.K03301' => 'egr', 'FAN02G0632' => 'fan', 'FAN05G5378' => 'fan', 'FAN09G3247' => 'fan', 'FAN12G0435' => 'fan', 'FAN12G2426' => 'fan', 'FAN14G1707' => 'fan', 'FAN14G4725' => 'fan', 'FAN15G2071' => 'fan', 'FAN17G3065' => 'fan', 'FAN19G1376' => 'fan', 'FAN20G0354' => 'fan', 'FAN20G2429' => 'fan', 'FAN20G2658' => 'fan', 'FAN24G2343' => 'fan', 'FAN27G2362' => 'fan', 'FAN28G1765' => 'fan', 'FvH4_1g16020' => 'fve', 'FvH4_2g04890' => 'fve', 'FvH4_2g22270' => 'fve', 'FvH4_4g02630' => 'fve', 'FvH4_4g02640' => 'fve', 'FvH4_6g02650' => 'fve', 'Glyma.02G140600' => 'gma', 'Glyma.03G159900' => 'gma', 'Glyma.05G234800' => 'gma', 'Glyma.07G269600' => 'gma', 'Glyma.08G042300' => 'gma', 'Glyma.10G033500' => 'gma', 'Glyma.10G185200' => 'gma', 'Glyma.17G004300' => 'gma', 'Glyma.19G161900' => 'gma', 'Glyma.20G205100' => 'gma', 'Glyma.20G205200' => 'gma', 'Gohir.A01G139101' => 'ghi', 'Gohir.A02G035600' => 'ghi', 'Gohir.A02G117901' => 'ghi', 'Gohir.A07G210100' => 'ghi', 'Gohir.A07G210200' => 'ghi', 'Gohir.A08G061100' => 'ghi', 'Gohir.A09G223000' => 'ghi', 'Gohir.A09G223100' => 'ghi', 'Gohir.A10G113900' => 'ghi', 'Gohir.A10G114000' => 'ghi', 'Gohir.D02G042300' => 'ghi', 'Gohir.D07G216100' => 'ghi', 'Gohir.D07G216200' => 'ghi', 'Gohir.D08G070400' => 'ghi', 'Gohir.D09G225000' => 'ghi', 'Gohir.D09G225100' => 'ghi', 'Gohir.D10G152300' => 'ghi', 'Gohir.D10G153200' => 'ghi', 'Gohir.D11G133701' => 'ghi', 'Gorai.004G074100' => 'gra', 'Gorai.005G046800' => 'gra', 'Gorai.006G246500' => 'gra', 'Gorai.006G246600' => 'gra', 'Gorai.007G142900' => 'gra', 'Gorai.011G171000' => 'gra', 'Gorai.011G171100' => 'gra', 'Gorai.013G104300' => 'gra', 'Gorai.013G104400' => 'gra', 'GSVIVG01000754001' => 'vvi', 'GSVIVG01000756001' => 'vvi', 'GSVIVG01010903001' => 'vvi', 'GSVIVG01017623001' => 'vvi', 'GSVIVG01018113001' => 'vvi', 'GSVIVG01018116001' => 'vvi', 'GSVIVG01018118001' => 'vvi', 'HanXRQChr03g0076211' => 'han', 'HanXRQChr03g0092431' => 'han', 'HanXRQChr03g0092441' => 'han', 'HanXRQChr03g0092591' => 'han', 'HanXRQChr03g0092671' => 'han', 'HanXRQChr03g0092681' => 'han', 'HanXRQChr03g0092691' => 'han', 'HanXRQChr03g0092701' => 'han', 'HanXRQChr03g0092721' => 'han', 'HanXRQChr03g0092731' => 'han', 'HanXRQChr04g0113681' => 'han', 'HanXRQChr10g0281371' => 'han', 'HanXRQChr11g0337141' => 'han', 'HanXRQChr13g0424521' => 'han', 'HanXRQChr13g0424531' => 'han', 'HanXRQChr13g0424541' => 'han', 'HanXRQChr16g0498221' => 'han', 'Haze_04377' => 'cav', 'Haze_11298' => 'cav', 'Haze_24547' => 'cav', 'Haze_24550' => 'cav', 'Haze_26587' => 'cav', 'Hma1.2p1_0650F.1_g195410' => 'hma', 'Hma1.2p1_0893F.1_g233470' => 'hma', 'HPP92_006508' => 'vpl', 'HPP92_024780' => 'vpl', 'Hund02688' => 'sun', 'Hund09380' => 'sun', 'Hund09381' => 'sun', 'Hund09832' => 'sun', 'Hund09833' => 'sun', 'Hund11351' => 'sun', 'Hund11513' => 'sun', 'Lalb_Chr06g0162591' => 'lal', 'Lalb_Chr06g0162601' => 'lal', 'Lalb_Chr06g0169321' => 'lal', 'Lalb_Chr09g0330951' => 'lal', 'Lalb_Chr16g0387631' => 'lal', 'Lalb_Chr21g0306241' => 'lal', 'Lalb_Chr25g0290051' => 'lal', 'Lalb_Chr25g0290061' => 'lal', 'Lalb_Chr25g0290071' => 'lal', 'Lj1g0003876' => 'lja', 'Lj1P1207T36' => 'lonja', 'Lj2C1156G12' => 'lonja', 'Lj3A793G39' => 'lonja', 'Lj3C580G2' => 'lonja', 'Lj3C780G2' => 'lonja', 'Lj3C780T4' => 'lonja', 'Lj3C793G9' => 'lonja', 'Lj4g0012960' => 'lja', 'Lj5g0021252' => 'lja', 'Lj5g0021484' => 'lja', 'Lj5g0024528' => 'lja', 'Lj6A399T12' => 'lonja', 'Lj6A656G65' => 'lonja', 'Lsat_1_v5_gn_3_125500' => 'lsa', 'Lsat_1_v5_gn_3_125540' => 'lsa', 'Lsat_1_v5_gn_5_72701' => 'lsa', 'Lsat_1_v5_gn_8_91560' => 'lsa', 'Lsat_1_v5_gn_9_9640' => 'lsa', 'Manes.01G200600' => 'mes', 'Manes.01G200700' => 'mes', 'Manes.03G168900' => 'mes', 'Manes.03G169000' => 'mes', 'Manes.05G085801' => 'mes', 'Manes.05G086200' => 'mes', 'Manes.15G036700' => 'mes', 'Manes.15G036900' => 'mes', 'Mapoly0004s0172' => 'mpo', 'Mapoly0023s0001' => 'mpo', 'Mapoly0142s0012' => 'mpo', 'MBI01_g32854_MAGBIO' => 'mbi', 'MBI11_g24427_MAGBIO' => 'mbi', 'MBI11_g47319_MAGBIO' => 'mbi', 'MCO01G433' => 'mco', 'MD00G1187800' => 'mdo', 'MD04G1226500' => 'mdo', 'MD05G1203900' => 'mdo', 'MD10G1191100' => 'mdo', 'MD12G1243500' => 'mdo', 'MD13G1207000' => 'mdo', 'MD13G1207100' => 'mdo', 'MD16G1208600' => 'mdo', 'Medtr1g050352' => 'mtr', 'Medtr1g070385' => 'mtr', 'Medtr1g070450' => 'mtr', 'Medtr1g075200' => 'mtr', 'Medtr1g075250' => 'mtr', 'Medtr1g075260' => 'mtr', 'Medtr1g475250' => 'mtr', 'Medtr4g075450' => 'mtr', 'Medtr7g096300' => 'mtr', 'Medtr8g105110' => 'mtr', 'MELO3C006470.2' => 'cme', 'MELO3C006471.2' => 'cme', 'MELO3C020772.2' => 'cme', 'MELO3C026780.2' => 'cme', 'MELO3C026781.2' => 'cme', 'Migut.D00390' => 'egut', 'Migut.G00435' => 'egut', 'Migut.G00436' => 'egut', 'Migut.G00718' => 'egut', 'MSTRG.21891' => 'ama', 'MSTRG.26910' => 'ama', 'MSTRG.4099' => 'ama', 'MSTRG.9925' => 'ama', 'Nitab4.5_0000165g0010' => 'nta', 'Nitab4.5_0000209g0180' => 'nta', 'Nitab4.5_0000244g0440' => 'nta', 'Nitab4.5_0000525g0220' => 'nta', 'Nitab4.5_0001597g0020' => 'nta', 'Nitab4.5_0001878g0040' => 'nta', 'Nitab4.5_0001878g0060' => 'nta', 'Nitab4.5_0002838g0100' => 'nta', 'Nitab4.5_0002838g0120' => 'nta', 'Nitab4.5_0004798g0030' => 'nta', 'Nitab4.5_0005420g0010' => 'nta', 'Nitab4.5_0005507g0010' => 'nta', 'Nitab4.5_0005574g0020' => 'nta', 'Nitab4.5_0005838g0010' => 'nta', 'Nitab4.5_0010580g0020' => 'nta', 'Nn1g02599' => 'nnu', 'Nn1g02608' => 'nnu', 'Nn3g17742' => 'nnu', 'Nn3g19534' => 'nnu', 'Nn3g19535' => 'nnu', 'Oeu008790.1' => 'oeu', 'Oeu008792.1' => 'oeu', 'Oeu032590.1' => 'oeu', 'Oeu035349.1' => 'oeu', 'Oeu049791.1' => 'oeu', 'Os01g0774500' => 'osa', 'Os03g0628800' => 'osa', 'Os03g0798600' => 'osa', 'Os05g0508800' => 'osa', 'Peaxi162Scf00036g02018' => 'pax', 'Peaxi162Scf00578g00032' => 'pax', 'Peaxi162Scf00578g00317' => 'pax', 'Peaxi162Scf00785g00114' => 'pax', 'Peaxi162Scf00813g00119' => 'pax', 'Peaxi162Scf00906g00227' => 'pax', 'PGR004G0875' => 'pgr', 'PGR004G2424' => 'pgr', 'PGR031G1239' => 'pgr', 'PGR031G2474' => 'pgr', 'PGR044G0423' => 'pgr', 'PGSC0003DMG400001128' => 'stu', 'PGSC0003DMG400007336' => 'stu', 'PGSC0003DMG400016318' => 'stu', 'PGSC0003DMG400016319' => 'stu', 'PGSC0003DMG400018074' => 'stu', 'Phvul.001G157700' => 'pvu', 'Phvul.002G148550' => 'pvu', 'Phvul.002G320200' => 'pvu', 'Phvul.003G089200' => 'pvu', 'Phvul.007G126000' => 'pvu', 'Phvul.007G126100' => 'pvu', 'Phvul.007G178000' => 'pvu', 'Phvul.007G178200' => 'pvu', 'Potri.002G043000' => 'ptr', 'Potri.002G043200' => 'ptr', 'Potri.003G123750' => 'ptr', 'Potri.005G055401' => 'ptr', 'Potri.005G219700' => 'ptr', 'Potri.005G220000' => 'ptr', 'Potri.008G161901' => 'ptr', 'Potri.008G162000' => 'ptr', 'Potri.008G162400' => 'ptr', 'Potri.010G076900' => 'ptr', 'Pp3c12_9180' => 'ppa', 'Pp3c13_19770' => 'ppa', 'Pp3c14_22950' => 'ppa', 'Pp3c16_12160' => 'ppa', 'Pp3c27_7820' => 'ppa', 'Pp3c2_3490' => 'ppa', 'Pp3c3_23700' => 'ppa', 'Pp3c3_36520' => 'ppa', 'Pp3c4_15250' => 'ppa', 'PRCOL_00007002' => 'pco', 'Prupe.1G030600' => 'ppe', 'Prupe.1G030700' => 'ppe', 'Prupe.6G345200' => 'ppe', 'Prupe.8G230300' => 'ppe', 'Prupe.8G230500' => 'ppe', 'Psat3g059600' => 'psa', 'Psat5g200920' => 'psa', 'Psat6g056440' => 'psa', 'Psat6g057360' => 'psa', 'Psat6g134120' => 'psa', 'Psat6g134160' => 'psa', 'Psat7g008640' => 'psa', 'Psat7g185240' => 'psa', 'PSO017G1330' => 'pso', 'PSO063G6097' => 'pso', 'PSO170G0835' => 'pso', 'PSO170G2499' => 'pso', 'PSO210G5058' => 'pso', 'PSO210G6154' => 'pso', 'PSO585G0031' => 'pso', 'PSO832G0264' => 'pso', 'PSO832G4288' => 'pso', 'QL03p027355' => 'qlo', 'QL03p027430' => 'qlo', 'QL04p081380' => 'qlo', 'QL06p015642' => 'qlo', 'QL06p015650' => 'qlo', 'QL06p015686' => 'qlo', 'QL12p042927' => 'qlo', 'QL93p1863_0035' => 'qlo', 'RcHm_v2.0_Chr3g0450581' => 'rch', 'RcHm_v2.0_Chr4g0390371' => 'rch', 'RcHm_v2.0_Chr4g0390381' => 'rch', 'RcHm_v2.0_Chr4g0390491' => 'rch', 'RcHm_v2.0_Chr4g0390501' => 'rch', 'RcHm_v2.0_Chr6g0289231' => 'rch', 'Rhsim04G0190400' => 'rsi', 'Rhsim04G0190500' => 'rsi', 'Rhsim04G0190600' => 'rsi', 'Rhsim13G0031400' => 'rsi', 'Rhsim13G0165600' => 'rsi', 'RhsimUnG0114600' => 'rsi', 'RhsimUnG0114700' => 'rsi', 'Sabra02G0034800' => 'sbr', 'Sabra02G0035100' => 'sbr', 'Sabra05G0168600' => 'sbr', 'Sabra05G0168800' => 'sbr', 'Sabra08G0123700' => 'sbr', 'Sabra10G0031900' => 'sbr', 'Sabra13G0039000' => 'sbr', 'SalBow2G0782' => 'sbo', 'SalBow2G1403' => 'sbo', 'SalBow4G0074' => 'sbo', 'SalBow4G2635' => 'sbo', 'SalBow5G3010' => 'sbo', 'Sc05g0000870' => 'sci', 'Sc05g0000890' => 'sci', 'Sc13g0005000' => 'sci', 'Sc13g0005030' => 'sci', 'Sc19g0003790' => 'sci', 'Sc19g0003800' => 'sci', 'Sed0003467' => 'sed', 'Sed0009355' => 'sed', 'Sed0009894' => 'sed', 'Sed0011972' => 'sed', 'Sed0021483' => 'sed', 'Sed0021750' => 'sed', 'Sed0026279' => 'sed', 'SEGI_05312' => 'sgi', 'SEGI_10112' => 'sgi', 'SEGI_15835' => 'sgi', 'SEGI_30386' => 'sgi', 'SEGI_34122' => 'sgi', 'SEGI_35063' => 'sgi', 'SGA_v2.0_scaffold101G29794' => 'sas', 'SGA_v2.0_scaffold1G00573' => 'sas', 'SGA_v2.0_scaffold79G25637' => 'sas', 'SGA_v2.0_scaffold88G27283' => 'sas', 'SGA_v2.0_scaffold88G27285' => 'sas', 'SGA_v2.0_scaffold88G27331' => 'sas', 'SHI09937' => 'shi', 'SMO119G0302' => 'smo', 'SMO137G0231' => 'smo', 'SMO367G1151' => 'smo', 'Solyc02g082000.3' => 'sly', 'Solyc06g031670.3' => 'sly', 'Solyc06g053810.3' => 'sly', 'Solyc07g025457.1' => 'sly', 'Solyc08g059740.1' => 'sly', 'Solyc08g059750.3' => 'sly', 'Solyc09g083370.3' => 'sly', 'Solyc12g038950.3' => 'sly', 'Sopen02g026630' => 'spe', 'Sopen06g018930' => 'spe', 'Sopen06g018940' => 'spe', 'Sopen08g009460' => 'spe', 'Sopen09g032290' => 'spe', 'Sp1g03080' => 'spa', 'Sp1g03090' => 'spa', 'Sp1g05480' => 'spa', 'Sp2g07860' => 'spa', 'Sp2g08430' => 'spa', 'Sp2g08440' => 'spa', 'Sp2g26200' => 'spa', 'Sp4g13170' => 'spa', 'Sp6g33840' => 'spa', 'SpUn1204_0010' => 'spa', 'TAR365G0908' => 'tar', 'TAR381G1270' => 'tar', 'TAR381G1651' => 'tar', 'TAR625G1131' => 'tar', 'TAR633G0962' => 'tar', 'TAR633G1729' => 'tar', 'TAR633G1864' => 'tar', 'TAR636G0221' => 'tar', 'TAR636G0314' => 'tar', 'TAR636G3202' => 'tar', 'THA.LOC104800805' => 'tha', 'THA.LOC104801096' => 'tha', 'THA.LOC104801555' => 'tha', 'THA.LOC104808491' => 'tha', 'THA.LOC104808595' => 'tha', 'THA.LOC104815985' => 'tha', 'THA.LOC104822250' => 'tha', 'THA.LOC104826071' => 'tha', 'Thecc.01G265200' => 'tca', 'Thecc.01G265300' => 'tca', 'Thecc.01G265700' => 'tca', 'Thecc.03G109100' => 'tca', 'Thecc.04G245900' => 'tca', 'Thecc.04G246000' => 'tca', 'Thhalv10003334m.g' => 'esa', 'Thhalv10005508m.g' => 'esa', 'Thhalv10005643m.g' => 'esa', 'Thhalv10007316m.g' => 'esa', 'Thhalv10009006m.g' => 'esa', 'Thhalv10009309m.g' => 'esa', 'Thhalv10014917m.g' => 'esa', 'Thhalv10014919m.g' => 'esa', 'Thhalv10015393m.g' => 'esa', 'Thhalv10016515m.g' => 'esa', 'Thhalv10029242m.g' => 'esa', 'TPR.G16654' => 'tpr', 'TPR.G20589' => 'tpr', 'TPR.G23029' => 'tpr', 'TPR.G27731' => 'tpr', 'TPR.G28889' => 'tpr', 'TPR.G28899' => 'tpr', 'TPR.G30846' => 'tpr', 'TPR.G5452' => 'tpr', 'TPR.G5713' => 'tpr', 'TPR.G9046' => 'tpr', 'TPR.G9061' => 'tpr', 'TWI09G1075' => 'twi', 'TWI12G0806' => 'twi', 'TWI18G0108' => 'twi', 'TWI53G1361' => 'twi', 'TWI73G0185' => 'twi', 'TWI73G0427' => 'twi', 'unitig_37.g12001' => 'ugi', 'unitig_747.g21660' => 'ugi', 'unitig_748.g7232' => 'ugi', 'unitig_748.g7315' => 'ugi', 'unitig_85.g27262' => 'ugi', 'unitig_92.g28220' => 'ugi', 'vmacro02632' => 'vma', 'vmacro08410' => 'vma', 'vmacro08411' => 'vma', 'vmacro15407' => 'vma', 'VMungo0251G3619' => 'vmu', 'VMungo0720G1204' => 'vmu', 'VMungo0720G1918' => 'vmu', 'VMungo0720G2387' => 'vmu', 'VMungo0720G2961' => 'vmu', 'VMungo1215G2154' => 'vmu', 'VMungo1383G2411' => 'vmu', 'Zm00001eb051130' => 'zma', 'Zm00001eb116830' => 'zma', 'Zm00001eb116850' => 'zma', 'Zm00001eb151740' => 'zma', 'Zm00001eb292360' => 'zma', 'Zm00001eb301640' => 'zma' ) $gf_id = 'HOM05D000856' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000856' ) $data_identifier = 'HOM05D000856' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 13, 'ath' => (int) 10, 'atr' => (int) 1, 'acertr' => (int) 8, 'cqu' => (int) 6, 'bca' => (int) 21, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 11, 'car' => (int) 9, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 8, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 5, 'fan' => (int) 16, 'fve' => (int) 6, 'gma' => (int) 11, 'ghi' => (int) 19, 'gra' => (int) 9, 'vvi' => (int) 7, 'han' => (int) 17, 'cav' => (int) 5, 'hma' => (int) 2, 'vpl' => (int) 2, 'sun' => (int) 7, 'lal' => (int) 9, 'lja' => (int) 5, 'lonja' => (int) 9, 'lsa' => (int) 5, 'mes' => (int) 8, 'mpo' => (int) 3, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 10, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 15, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 9, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 9, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 6, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 5, 'spa' => (int) 10, 'tar' => (int) 10, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 11, 'tpr' => (int) 11, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 4, 'vmu' => (int) 7, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb301640' $species_info = array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ) $local_species = 'hma' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000856', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p00010' => 'bna', 'A03p04160' => 'bna', 'A03p17160' => 'bna', 'A04p23370' => 'bna', 'A05p14860' => 'bna', 'A08p37020' => 'bna', 'A09p08050' => 'bna', 'A09p66800' => 'bna', 'A09p67940' => 'bna', 'A10p02680' => 'bna', 'A10p05320' => 'bna', 'Aa31LG1G20560' => 'aar', 'Aa31LG1G20610' => 'aar', 'Aa31LG1G7810' => 'aar', 'Aa31LG5G3590' => 'aar', 'Aa31LG5G6140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3819' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4683' => 'aag', 'Actinidia04480' => 'ach', 'Actinidia05466' => 'ach', 'Actinidia08445' => 'ach', 'Actinidia21170' => 'ach', 'Actinidia24812' => 'ach', 'Actinidia24951' => 'ach', 'Actinidia40088' => 'ach', 'Ah.02g111660' => 'amhyb', 'Ah.11g048900' => 'amhyb', 'Ah.11g049910' => 'amhyb', 'AL1G13870' => 'aly', 'AL1G13880' => 'aly', 'AL1G16760' => 'aly', 'AL390U10020' => 'aly', 'AL4G25520' => 'aly', 'AL6G19890' => 'aly', 'AL6G19900' => 'aly', 'AL6G19910' => 'aly', 'AL8G40100' => 'aly', 'Aqoxy2G03562' => 'aox', 'Aqoxy5G00316' => 'aox', 'Aqoxy5G00926' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1628KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1H403S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2FU6SJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.882I6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8YRY2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YN1SN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AF70II' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZA8L1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F916KL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHRD8H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KTZ8QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S22EMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8M29T' => 'arhy', 'AT1G04270' => 'ath', 'AT1G04280' => 'ath', 'AT1G06750' => 'ath', 'AT1G33850' => 'ath', 'AT2G30630' => 'ath', 'AT5G09490' => 'ath', 'AT5G09500' => 'ath', 'AT5G09510' => 'ath', 'AT5G43640' => 'ath', 'AT5G63070' => 'ath', 'ATR0605G315' => 'atr', 'Atru.chr11.175' => 'acertr', 'Atru.chr11.653' => 'acertr', 'Atru.chr3.1616' => 'acertr', 'Atru.chr4.2230' => 'acertr', 'Atru.chr4.2232' => 'acertr', 'Atru.chr5.1598' => 'acertr', 'Atru.chr5.1600' => 'acertr', 'Atru.chr5.2188' => 'acertr', 'AUR62008326' => 'cqu', 'AUR62011922' => 'cqu', 'AUR62011924' => 'cqu', 'AUR62021771' => 'cqu', 'AUR62032237' => 'cqu', 'AUR62032240' => 'cqu', 'BcaB01g05572' => 'bca', 'BcaB02g10337' => 'bca', 'BcaB04g19944' => 'bca', 'BcaB05g21548' => 'bca', 'BcaB05g21549' => 'bca', 'BcaB05g23227' => 'bca', 'BcaB06g26256' => 'bca', 'BcaB06g26257' => 'bca', 'BcaB06g28379' => 'bca', 'BcaC02g11159' => 'bca', 'BcaC03g13258' => 'bca', 'BcaC03g13259' => 'bca', 'BcaC05g24456' => 'bca', 'BcaC05g24457' => 'bca', 'BcaC07g36922' => 'bca', 'BcaC07g36923' => 'bca', 'BcaC07g42050' => 'bca', 'BcaC07g42176' => 'bca', 'BcaC07g42195' => 'bca', 'BcaC07g42196' => 'bca', 'BcaNung06674' => 'bca', 'BolC2t06351H' => 'bol', 'BolC2t06352H' => 'bol', 'BolC3t12993H' => 'bol', 'BolC4t23525H' => 'bol', 'BolC4t27475H' => 'bol', 'BolC5t29025H' => 'bol', 'BolC5t29026H' => 'bol', 'BolC8t46898H' => 'bol', 'BolC8t46899H' => 'bol', 'BolC8t52630H' => 'bol', 'BolC8t52765H' => 'bol', 'BolC9t53824H' => 'bol', 'BraA03t09760Z' => 'bra', 'BraA03t10990Z' => 'bra', 'BraA05t20413Z' => 'bra', 'BraA08t35602Z' => 'bra', 'BraA09t36458Z' => 'bra', 'BraA09t42018Z' => 'bra', 'BraA09t42129Z' => 'bra', 'BraA10t42536Z' => 'bra', 'BraA10t42537Z' => 'bra', 'C01p10690' => 'bna', 'C02p03890' => 'bna', 'C02p03900' => 'bna', 'C03p04620' => 'bna', 'C04p19870' => 'bna', 'C04p59670' => 'bna', 'C05p02460' => 'bna', 'C05p02470' => 'bna', 'C08p00980' => 'bna', 'C08p00990' => 'bna', 'C08p51030' => 'bna', 'C08p52360' => 'bna', 'C09p09120' => 'bna', 'CAN.G19.15' => 'can', 'CAN.G251.10' => 'can', 'CAN.G251.9' => 'can', 'CAN.G398.24' => 'can', 'CAN.G410.32' => 'can', 'CAN.G881.2' => 'can', 'CANSAT01G3025' => 'cansat', 'CANSAT78G1211' => 'cansat', 'CANSAT78G1218' => 'cansat', 'CANSAT78G1521' => 'cansat', 'CANSAT78G1670' => 'cansat', 'CARHR003600' => 'chi', 'CARHR003610' => 'chi', 'CARHR006290' => 'chi', 'CARHR006430' => 'chi', 'CARHR124110' => 'chi', 'CARHR203870' => 'chi', 'CARHR203880' => 'chi', 'CARHR203890' => 'chi', 'CARHR276880' => 'chi', 'Carub.0001s0346' => 'cru', 'Carub.0001s0347' => 'cru', 'Carub.0001s0607' => 'cru', 'Carub.0003s2768' => 'cru', 'Carub.0003s2769' => 'cru', 'Carub.0004s1178' => 'cru', 'Carub.0006s0806' => 'cru', 'Carub.0006s0807' => 'cru', 'Carub.0006s0808' => 'cru', 'Carub.0008s0501' => 'cru', 'Carub.0008s2379' => 'cru', 'Ca_08655_v3' => 'car', 'Ca_08922_v3' => 'car', 'Ca_08923_v3' => 'car', 'Ca_09119_v3' => 'car', 'Ca_09703_v3' => 'car', 'Ca_09705_v3' => 'car', 'Ca_09835_v3' => 'car', 'Ca_26403_v3' => 'car', 'Ca_30719_v3' => 'car', 'CBR_g17958' => 'cbr', 'CBR_g40516' => 'cbr', 'Cc00_g05350' => 'ccan', 'Cc01_g18690' => 'ccan', 'Cc03_g04830' => 'ccan', 'Cc03_g04850' => 'ccan', 'CDE02G4469' => 'cde', 'CDE06G0883' => 'cde', 'CDE06G1295' => 'cde', 'CDE06G1390' => 'cde', 'CDE07G0584' => 'cde', 'CDE07G1084' => 'cde', 'CDE08G1259' => 'cde', 'Cfa002341' => 'cfa', 'Cfa024337' => 'cfa', 'Ciclev10004749m.g' => 'ccl', 'Ciclev10006127m.g' => 'ccl', 'Ciclev10019720m.g' => 'ccl', 'Ciclev10022652m.g' => 'ccl', 'CiPaw.01G190400' => 'cil', 'CiPaw.01G190500' => 'cil', 'CiPaw.02G116400' => 'cil', 'CiPaw.02G116500' => 'cil', 'CiPaw.04G183000' => 'cil', 'CiPaw.04G183300' => 'cil', 'ClCG05G004610' => 'cla', 'ClCG05G004620' => 'cla', 'ClCG06G006730' => 'cla', 'ClCG06G006740' => 'cla', 'ClCG11G003690' => 'cla', 'COL.COLO4_08276' => 'col', 'COL.COLO4_08277' => 'col', 'COL.COLO4_15787' => 'col', 'COL.COLO4_15789' => 'col', 'Cpa.g.c44815' => 'cpa', 'Cpa.g.sc52.144' => 'cpa', 'Cpa.g.sc58.46' => 'cpa', 'Cpa.g.sc58.47' => 'cpa', 'Cre08.g360900' => 'cre', 'CsaV3_2G013030' => 'csa', 'CsaV3_2G013050' => 'csa', 'CsaV3_2G015620' => 'csa', 'CsaV3_3G012590' => 'csa', 'CsaV3_3G012600' => 'csa', 'CSS0001641' => 'camsi', 'CSS0008310' => 'camsi', 'CSS0013011' => 'camsi', 'CSS0017147' => 'camsi', 'CSS0022970' => 'camsi', 'CSS0025655' => 'camsi', 'CSS0028665' => 'camsi', 'CSS0029117' => 'camsi', 'CSS0032024' => 'camsi', 'CSS0039681' => 'camsi', 'CSS0046516' => 'camsi', 'CSS0050307' => 'camsi', 'DCAR_005871' => 'dca', 'DCAR_007342' => 'dca', 'DCAR_024228' => 'dca', 'DCAR_027277' => 'dca', 'DCAR_030718' => 'dca', 'Dinv20287' => 'din', 'Dinv22461' => 'din', 'Dinv22464' => 'din', 'Dinv29912' => 'din', 'Dinv29913' => 'din', 'Dinv34580' => 'din', 'Dinv34582' => 'din', 'Dinv44632' => 'din', 'Duzib052G0266' => 'dzi', 'Duzib133G0907' => 'dzi', 'Duzib133G1034' => 'dzi', 'Duzib138G0207' => 'dzi', 'Duzib138G0491' => 'dzi', 'Duzib151G0812' => 'dzi', 'Duzib151G1166' => 'dzi', 'Duzib168G0192' => 'dzi', 'Duzib211G0077' => 'dzi', 'Duzib212G0429' => 'dzi', 'Duzib212G0472' => 'dzi', 'ECA233G2617' => 'eca', 'ECA236G4188' => 'eca', 'ECA240G0936' => 'eca', 'ECA240G1129' => 'eca', 'ECA247G0623' => 'eca', 'EL10Ac5g10451' => 'bvu', 'EL10Ac5g10453' => 'bvu', 'EL10Ac5g10894' => 'bvu', 'Eucgr.H00192' => 'egr', 'Eucgr.H00193' => 'egr', 'Eucgr.H00194' => 'egr', 'Eucgr.J01562' => 'egr', 'Eucgr.K03301' => 'egr', 'FAN02G0632' => 'fan', 'FAN05G5378' => 'fan', 'FAN09G3247' => 'fan', 'FAN12G0435' => 'fan', 'FAN12G2426' => 'fan', 'FAN14G1707' => 'fan', 'FAN14G4725' => 'fan', 'FAN15G2071' => 'fan', 'FAN17G3065' => 'fan', 'FAN19G1376' => 'fan', 'FAN20G0354' => 'fan', 'FAN20G2429' => 'fan', 'FAN20G2658' => 'fan', 'FAN24G2343' => 'fan', 'FAN27G2362' => 'fan', 'FAN28G1765' => 'fan', 'FvH4_1g16020' => 'fve', 'FvH4_2g04890' => 'fve', 'FvH4_2g22270' => 'fve', 'FvH4_4g02630' => 'fve', 'FvH4_4g02640' => 'fve', 'FvH4_6g02650' => 'fve', 'Glyma.02G140600' => 'gma', 'Glyma.03G159900' => 'gma', 'Glyma.05G234800' => 'gma', 'Glyma.07G269600' => 'gma', 'Glyma.08G042300' => 'gma', 'Glyma.10G033500' => 'gma', 'Glyma.10G185200' => 'gma', 'Glyma.17G004300' => 'gma', 'Glyma.19G161900' => 'gma', 'Glyma.20G205100' => 'gma', 'Glyma.20G205200' => 'gma', 'Gohir.A01G139101' => 'ghi', 'Gohir.A02G035600' => 'ghi', 'Gohir.A02G117901' => 'ghi', 'Gohir.A07G210100' => 'ghi', 'Gohir.A07G210200' => 'ghi', 'Gohir.A08G061100' => 'ghi', 'Gohir.A09G223000' => 'ghi', 'Gohir.A09G223100' => 'ghi', 'Gohir.A10G113900' => 'ghi', 'Gohir.A10G114000' => 'ghi', 'Gohir.D02G042300' => 'ghi', 'Gohir.D07G216100' => 'ghi', 'Gohir.D07G216200' => 'ghi', 'Gohir.D08G070400' => 'ghi', 'Gohir.D09G225000' => 'ghi', 'Gohir.D09G225100' => 'ghi', 'Gohir.D10G152300' => 'ghi', 'Gohir.D10G153200' => 'ghi', 'Gohir.D11G133701' => 'ghi', 'Gorai.004G074100' => 'gra', 'Gorai.005G046800' => 'gra', 'Gorai.006G246500' => 'gra', 'Gorai.006G246600' => 'gra', 'Gorai.007G142900' => 'gra', 'Gorai.011G171000' => 'gra', 'Gorai.011G171100' => 'gra', 'Gorai.013G104300' => 'gra', 'Gorai.013G104400' => 'gra', 'GSVIVG01000754001' => 'vvi', 'GSVIVG01000756001' => 'vvi', 'GSVIVG01010903001' => 'vvi', 'GSVIVG01017623001' => 'vvi', 'GSVIVG01018113001' => 'vvi', 'GSVIVG01018116001' => 'vvi', 'GSVIVG01018118001' => 'vvi', 'HanXRQChr03g0076211' => 'han', 'HanXRQChr03g0092431' => 'han', 'HanXRQChr03g0092441' => 'han', 'HanXRQChr03g0092591' => 'han', 'HanXRQChr03g0092671' => 'han', 'HanXRQChr03g0092681' => 'han', 'HanXRQChr03g0092691' => 'han', 'HanXRQChr03g0092701' => 'han', 'HanXRQChr03g0092721' => 'han', 'HanXRQChr03g0092731' => 'han', 'HanXRQChr04g0113681' => 'han', 'HanXRQChr10g0281371' => 'han', 'HanXRQChr11g0337141' => 'han', 'HanXRQChr13g0424521' => 'han', 'HanXRQChr13g0424531' => 'han', 'HanXRQChr13g0424541' => 'han', 'HanXRQChr16g0498221' => 'han', 'Haze_04377' => 'cav', 'Haze_11298' => 'cav', 'Haze_24547' => 'cav', 'Haze_24550' => 'cav', 'Haze_26587' => 'cav', 'Hma1.2p1_0650F.1_g195410' => 'hma', 'Hma1.2p1_0893F.1_g233470' => 'hma', 'HPP92_006508' => 'vpl', 'HPP92_024780' => 'vpl', 'Hund02688' => 'sun', 'Hund09380' => 'sun', 'Hund09381' => 'sun', 'Hund09832' => 'sun', 'Hund09833' => 'sun', 'Hund11351' => 'sun', 'Hund11513' => 'sun', 'Lalb_Chr06g0162591' => 'lal', 'Lalb_Chr06g0162601' => 'lal', 'Lalb_Chr06g0169321' => 'lal', 'Lalb_Chr09g0330951' => 'lal', 'Lalb_Chr16g0387631' => 'lal', 'Lalb_Chr21g0306241' => 'lal', 'Lalb_Chr25g0290051' => 'lal', 'Lalb_Chr25g0290061' => 'lal', 'Lalb_Chr25g0290071' => 'lal', 'Lj1g0003876' => 'lja', 'Lj1P1207T36' => 'lonja', 'Lj2C1156G12' => 'lonja', 'Lj3A793G39' => 'lonja', 'Lj3C580G2' => 'lonja', 'Lj3C780G2' => 'lonja', 'Lj3C780T4' => 'lonja', 'Lj3C793G9' => 'lonja', 'Lj4g0012960' => 'lja', 'Lj5g0021252' => 'lja', 'Lj5g0021484' => 'lja', 'Lj5g0024528' => 'lja', 'Lj6A399T12' => 'lonja', 'Lj6A656G65' => 'lonja', 'Lsat_1_v5_gn_3_125500' => 'lsa', 'Lsat_1_v5_gn_3_125540' => 'lsa', 'Lsat_1_v5_gn_5_72701' => 'lsa', 'Lsat_1_v5_gn_8_91560' => 'lsa', 'Lsat_1_v5_gn_9_9640' => 'lsa', 'Manes.01G200600' => 'mes', 'Manes.01G200700' => 'mes', 'Manes.03G168900' => 'mes', 'Manes.03G169000' => 'mes', 'Manes.05G085801' => 'mes', 'Manes.05G086200' => 'mes', 'Manes.15G036700' => 'mes', 'Manes.15G036900' => 'mes', 'Mapoly0004s0172' => 'mpo', 'Mapoly0023s0001' => 'mpo', 'Mapoly0142s0012' => 'mpo', 'MBI01_g32854_MAGBIO' => 'mbi', 'MBI11_g24427_MAGBIO' => 'mbi', 'MBI11_g47319_MAGBIO' => 'mbi', 'MCO01G433' => 'mco', 'MD00G1187800' => 'mdo', 'MD04G1226500' => 'mdo', 'MD05G1203900' => 'mdo', 'MD10G1191100' => 'mdo', 'MD12G1243500' => 'mdo', 'MD13G1207000' => 'mdo', 'MD13G1207100' => 'mdo', 'MD16G1208600' => 'mdo', 'Medtr1g050352' => 'mtr', 'Medtr1g070385' => 'mtr', 'Medtr1g070450' => 'mtr', 'Medtr1g075200' => 'mtr', 'Medtr1g075250' => 'mtr', 'Medtr1g075260' => 'mtr', 'Medtr1g475250' => 'mtr', 'Medtr4g075450' => 'mtr', 'Medtr7g096300' => 'mtr', 'Medtr8g105110' => 'mtr', 'MELO3C006470.2' => 'cme', 'MELO3C006471.2' => 'cme', 'MELO3C020772.2' => 'cme', 'MELO3C026780.2' => 'cme', 'MELO3C026781.2' => 'cme', 'Migut.D00390' => 'egut', 'Migut.G00435' => 'egut', 'Migut.G00436' => 'egut', 'Migut.G00718' => 'egut', 'MSTRG.21891' => 'ama', 'MSTRG.26910' => 'ama', 'MSTRG.4099' => 'ama', 'MSTRG.9925' => 'ama', 'Nitab4.5_0000165g0010' => 'nta', 'Nitab4.5_0000209g0180' => 'nta', 'Nitab4.5_0000244g0440' => 'nta', 'Nitab4.5_0000525g0220' => 'nta', 'Nitab4.5_0001597g0020' => 'nta', 'Nitab4.5_0001878g0040' => 'nta', 'Nitab4.5_0001878g0060' => 'nta', 'Nitab4.5_0002838g0100' => 'nta', 'Nitab4.5_0002838g0120' => 'nta', 'Nitab4.5_0004798g0030' => 'nta', 'Nitab4.5_0005420g0010' => 'nta', 'Nitab4.5_0005507g0010' => 'nta', 'Nitab4.5_0005574g0020' => 'nta', 'Nitab4.5_0005838g0010' => 'nta', 'Nitab4.5_0010580g0020' => 'nta', 'Nn1g02599' => 'nnu', 'Nn1g02608' => 'nnu', 'Nn3g17742' => 'nnu', 'Nn3g19534' => 'nnu', 'Nn3g19535' => 'nnu', 'Oeu008790.1' => 'oeu', 'Oeu008792.1' => 'oeu', 'Oeu032590.1' => 'oeu', 'Oeu035349.1' => 'oeu', 'Oeu049791.1' => 'oeu', 'Os01g0774500' => 'osa', 'Os03g0628800' => 'osa', 'Os03g0798600' => 'osa', 'Os05g0508800' => 'osa', 'Peaxi162Scf00036g02018' => 'pax', 'Peaxi162Scf00578g00032' => 'pax', 'Peaxi162Scf00578g00317' => 'pax', 'Peaxi162Scf00785g00114' => 'pax', 'Peaxi162Scf00813g00119' => 'pax', 'Peaxi162Scf00906g00227' => 'pax', 'PGR004G0875' => 'pgr', 'PGR004G2424' => 'pgr', 'PGR031G1239' => 'pgr', 'PGR031G2474' => 'pgr', 'PGR044G0423' => 'pgr', 'PGSC0003DMG400001128' => 'stu', 'PGSC0003DMG400007336' => 'stu', 'PGSC0003DMG400016318' => 'stu', 'PGSC0003DMG400016319' => 'stu', 'PGSC0003DMG400018074' => 'stu', 'Phvul.001G157700' => 'pvu', 'Phvul.002G148550' => 'pvu', 'Phvul.002G320200' => 'pvu', 'Phvul.003G089200' => 'pvu', 'Phvul.007G126000' => 'pvu', 'Phvul.007G126100' => 'pvu', 'Phvul.007G178000' => 'pvu', 'Phvul.007G178200' => 'pvu', 'Potri.002G043000' => 'ptr', 'Potri.002G043200' => 'ptr', 'Potri.003G123750' => 'ptr', 'Potri.005G055401' => 'ptr', 'Potri.005G219700' => 'ptr', 'Potri.005G220000' => 'ptr', 'Potri.008G161901' => 'ptr', 'Potri.008G162000' => 'ptr', 'Potri.008G162400' => 'ptr', 'Potri.010G076900' => 'ptr', 'Pp3c12_9180' => 'ppa', 'Pp3c13_19770' => 'ppa', 'Pp3c14_22950' => 'ppa', 'Pp3c16_12160' => 'ppa', 'Pp3c27_7820' => 'ppa', 'Pp3c2_3490' => 'ppa', 'Pp3c3_23700' => 'ppa', 'Pp3c3_36520' => 'ppa', 'Pp3c4_15250' => 'ppa', 'PRCOL_00007002' => 'pco', 'Prupe.1G030600' => 'ppe', 'Prupe.1G030700' => 'ppe', 'Prupe.6G345200' => 'ppe', 'Prupe.8G230300' => 'ppe', 'Prupe.8G230500' => 'ppe', 'Psat3g059600' => 'psa', 'Psat5g200920' => 'psa', 'Psat6g056440' => 'psa', 'Psat6g057360' => 'psa', 'Psat6g134120' => 'psa', 'Psat6g134160' => 'psa', 'Psat7g008640' => 'psa', 'Psat7g185240' => 'psa', 'PSO017G1330' => 'pso', 'PSO063G6097' => 'pso', 'PSO170G0835' => 'pso', 'PSO170G2499' => 'pso', 'PSO210G5058' => 'pso', 'PSO210G6154' => 'pso', 'PSO585G0031' => 'pso', 'PSO832G0264' => 'pso', 'PSO832G4288' => 'pso', 'QL03p027355' => 'qlo', 'QL03p027430' => 'qlo', 'QL04p081380' => 'qlo', 'QL06p015642' => 'qlo', 'QL06p015650' => 'qlo', 'QL06p015686' => 'qlo', 'QL12p042927' => 'qlo', 'QL93p1863_0035' => 'qlo', 'RcHm_v2.0_Chr3g0450581' => 'rch', 'RcHm_v2.0_Chr4g0390371' => 'rch', 'RcHm_v2.0_Chr4g0390381' => 'rch', 'RcHm_v2.0_Chr4g0390491' => 'rch', 'RcHm_v2.0_Chr4g0390501' => 'rch', 'RcHm_v2.0_Chr6g0289231' => 'rch', 'Rhsim04G0190400' => 'rsi', 'Rhsim04G0190500' => 'rsi', 'Rhsim04G0190600' => 'rsi', 'Rhsim13G0031400' => 'rsi', 'Rhsim13G0165600' => 'rsi', 'RhsimUnG0114600' => 'rsi', 'RhsimUnG0114700' => 'rsi', 'Sabra02G0034800' => 'sbr', 'Sabra02G0035100' => 'sbr', 'Sabra05G0168600' => 'sbr', 'Sabra05G0168800' => 'sbr', 'Sabra08G0123700' => 'sbr', 'Sabra10G0031900' => 'sbr', 'Sabra13G0039000' => 'sbr', 'SalBow2G0782' => 'sbo', 'SalBow2G1403' => 'sbo', 'SalBow4G0074' => 'sbo', 'SalBow4G2635' => 'sbo', 'SalBow5G3010' => 'sbo', 'Sc05g0000870' => 'sci', 'Sc05g0000890' => 'sci', 'Sc13g0005000' => 'sci', 'Sc13g0005030' => 'sci', 'Sc19g0003790' => 'sci', 'Sc19g0003800' => 'sci', 'Sed0003467' => 'sed', 'Sed0009355' => 'sed', 'Sed0009894' => 'sed', 'Sed0011972' => 'sed', 'Sed0021483' => 'sed', 'Sed0021750' => 'sed', 'Sed0026279' => 'sed', 'SEGI_05312' => 'sgi', 'SEGI_10112' => 'sgi', 'SEGI_15835' => 'sgi', 'SEGI_30386' => 'sgi', 'SEGI_34122' => 'sgi', 'SEGI_35063' => 'sgi', 'SGA_v2.0_scaffold101G29794' => 'sas', 'SGA_v2.0_scaffold1G00573' => 'sas', 'SGA_v2.0_scaffold79G25637' => 'sas', 'SGA_v2.0_scaffold88G27283' => 'sas', 'SGA_v2.0_scaffold88G27285' => 'sas', 'SGA_v2.0_scaffold88G27331' => 'sas', 'SHI09937' => 'shi', 'SMO119G0302' => 'smo', 'SMO137G0231' => 'smo', 'SMO367G1151' => 'smo', 'Solyc02g082000.3' => 'sly', 'Solyc06g031670.3' => 'sly', 'Solyc06g053810.3' => 'sly', 'Solyc07g025457.1' => 'sly', 'Solyc08g059740.1' => 'sly', 'Solyc08g059750.3' => 'sly', 'Solyc09g083370.3' => 'sly', 'Solyc12g038950.3' => 'sly', 'Sopen02g026630' => 'spe', 'Sopen06g018930' => 'spe', 'Sopen06g018940' => 'spe', 'Sopen08g009460' => 'spe', 'Sopen09g032290' => 'spe', 'Sp1g03080' => 'spa', 'Sp1g03090' => 'spa', 'Sp1g05480' => 'spa', 'Sp2g07860' => 'spa', 'Sp2g08430' => 'spa', 'Sp2g08440' => 'spa', 'Sp2g26200' => 'spa', 'Sp4g13170' => 'spa', 'Sp6g33840' => 'spa', 'SpUn1204_0010' => 'spa', 'TAR365G0908' => 'tar', 'TAR381G1270' => 'tar', 'TAR381G1651' => 'tar', 'TAR625G1131' => 'tar', 'TAR633G0962' => 'tar', 'TAR633G1729' => 'tar', 'TAR633G1864' => 'tar', 'TAR636G0221' => 'tar', 'TAR636G0314' => 'tar', 'TAR636G3202' => 'tar', 'THA.LOC104800805' => 'tha', 'THA.LOC104801096' => 'tha', 'THA.LOC104801555' => 'tha', 'THA.LOC104808491' => 'tha', 'THA.LOC104808595' => 'tha', 'THA.LOC104815985' => 'tha', 'THA.LOC104822250' => 'tha', 'THA.LOC104826071' => 'tha', 'Thecc.01G265200' => 'tca', 'Thecc.01G265300' => 'tca', 'Thecc.01G265700' => 'tca', 'Thecc.03G109100' => 'tca', 'Thecc.04G245900' => 'tca', 'Thecc.04G246000' => 'tca', 'Thhalv10003334m.g' => 'esa', 'Thhalv10005508m.g' => 'esa', 'Thhalv10005643m.g' => 'esa', 'Thhalv10007316m.g' => 'esa', 'Thhalv10009006m.g' => 'esa', 'Thhalv10009309m.g' => 'esa', 'Thhalv10014917m.g' => 'esa', 'Thhalv10014919m.g' => 'esa', 'Thhalv10015393m.g' => 'esa', 'Thhalv10016515m.g' => 'esa', 'Thhalv10029242m.g' => 'esa', 'TPR.G16654' => 'tpr', 'TPR.G20589' => 'tpr', 'TPR.G23029' => 'tpr', 'TPR.G27731' => 'tpr', 'TPR.G28889' => 'tpr', 'TPR.G28899' => 'tpr', 'TPR.G30846' => 'tpr', 'TPR.G5452' => 'tpr', 'TPR.G5713' => 'tpr', 'TPR.G9046' => 'tpr', 'TPR.G9061' => 'tpr', 'TWI09G1075' => 'twi', 'TWI12G0806' => 'twi', 'TWI18G0108' => 'twi', 'TWI53G1361' => 'twi', 'TWI73G0185' => 'twi', 'TWI73G0427' => 'twi', 'unitig_37.g12001' => 'ugi', 'unitig_747.g21660' => 'ugi', 'unitig_748.g7232' => 'ugi', 'unitig_748.g7315' => 'ugi', 'unitig_85.g27262' => 'ugi', 'unitig_92.g28220' => 'ugi', 'vmacro02632' => 'vma', 'vmacro08410' => 'vma', 'vmacro08411' => 'vma', 'vmacro15407' => 'vma', 'VMungo0251G3619' => 'vmu', 'VMungo0720G1204' => 'vmu', 'VMungo0720G1918' => 'vmu', 'VMungo0720G2387' => 'vmu', 'VMungo0720G2961' => 'vmu', 'VMungo1215G2154' => 'vmu', 'VMungo1383G2411' => 'vmu', 'Zm00001eb051130' => 'zma', 'Zm00001eb116830' => 'zma', 'Zm00001eb116850' => 'zma', 'Zm00001eb151740' => 'zma', 'Zm00001eb292360' => 'zma', 'Zm00001eb301640' => 'zma' ), 'gf_id' => 'HOM05D000856', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000856' ), 'data_identifier' => 'HOM05D000856', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000856', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p00010' => 'bna', 'A03p04160' => 'bna', 'A03p17160' => 'bna', 'A04p23370' => 'bna', 'A05p14860' => 'bna', 'A08p37020' => 'bna', 'A09p08050' => 'bna', 'A09p66800' => 'bna', 'A09p67940' => 'bna', 'A10p02680' => 'bna', 'A10p05320' => 'bna', 'Aa31LG1G20560' => 'aar', 'Aa31LG1G20610' => 'aar', 'Aa31LG1G7810' => 'aar', 'Aa31LG5G3590' => 'aar', 'Aa31LG5G6140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3819' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4683' => 'aag', 'Actinidia04480' => 'ach', 'Actinidia05466' => 'ach', 'Actinidia08445' => 'ach', 'Actinidia21170' => 'ach', 'Actinidia24812' => 'ach', 'Actinidia24951' => 'ach', 'Actinidia40088' => 'ach', 'Ah.02g111660' => 'amhyb', 'Ah.11g048900' => 'amhyb', 'Ah.11g049910' => 'amhyb', 'AL1G13870' => 'aly', 'AL1G13880' => 'aly', 'AL1G16760' => 'aly', 'AL390U10020' => 'aly', 'AL4G25520' => 'aly', 'AL6G19890' => 'aly', 'AL6G19900' => 'aly', 'AL6G19910' => 'aly', 'AL8G40100' => 'aly', 'Aqoxy2G03562' => 'aox', 'Aqoxy5G00316' => 'aox', 'Aqoxy5G00926' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1628KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1H403S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2FU6SJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.882I6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8YRY2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YN1SN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AF70II' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZA8L1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F916KL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHRD8H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KTZ8QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S22EMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8M29T' => 'arhy', 'AT1G04270' => 'ath', 'AT1G04280' => 'ath', 'AT1G06750' => 'ath', 'AT1G33850' => 'ath', 'AT2G30630' => 'ath', 'AT5G09490' => 'ath', 'AT5G09500' => 'ath', 'AT5G09510' => 'ath', 'AT5G43640' => 'ath', 'AT5G63070' => 'ath', 'ATR0605G315' => 'atr', 'Atru.chr11.175' => 'acertr', 'Atru.chr11.653' => 'acertr', 'Atru.chr3.1616' => 'acertr', 'Atru.chr4.2230' => 'acertr', 'Atru.chr4.2232' => 'acertr', 'Atru.chr5.1598' => 'acertr', 'Atru.chr5.1600' => 'acertr', 'Atru.chr5.2188' => 'acertr', 'AUR62008326' => 'cqu', 'AUR62011922' => 'cqu', 'AUR62011924' => 'cqu', 'AUR62021771' => 'cqu', 'AUR62032237' => 'cqu', 'AUR62032240' => 'cqu', 'BcaB01g05572' => 'bca', 'BcaB02g10337' => 'bca', 'BcaB04g19944' => 'bca', 'BcaB05g21548' => 'bca', 'BcaB05g21549' => 'bca', 'BcaB05g23227' => 'bca', 'BcaB06g26256' => 'bca', 'BcaB06g26257' => 'bca', 'BcaB06g28379' => 'bca', 'BcaC02g11159' => 'bca', 'BcaC03g13258' => 'bca', 'BcaC03g13259' => 'bca', 'BcaC05g24456' => 'bca', 'BcaC05g24457' => 'bca', 'BcaC07g36922' => 'bca', 'BcaC07g36923' => 'bca', 'BcaC07g42050' => 'bca', 'BcaC07g42176' => 'bca', 'BcaC07g42195' => 'bca', 'BcaC07g42196' => 'bca', 'BcaNung06674' => 'bca', 'BolC2t06351H' => 'bol', 'BolC2t06352H' => 'bol', 'BolC3t12993H' => 'bol', 'BolC4t23525H' => 'bol', 'BolC4t27475H' => 'bol', 'BolC5t29025H' => 'bol', 'BolC5t29026H' => 'bol', 'BolC8t46898H' => 'bol', 'BolC8t46899H' => 'bol', 'BolC8t52630H' => 'bol', 'BolC8t52765H' => 'bol', 'BolC9t53824H' => 'bol', 'BraA03t09760Z' => 'bra', 'BraA03t10990Z' => 'bra', 'BraA05t20413Z' => 'bra', 'BraA08t35602Z' => 'bra', 'BraA09t36458Z' => 'bra', 'BraA09t42018Z' => 'bra', 'BraA09t42129Z' => 'bra', 'BraA10t42536Z' => 'bra', 'BraA10t42537Z' => 'bra', 'C01p10690' => 'bna', 'C02p03890' => 'bna', 'C02p03900' => 'bna', 'C03p04620' => 'bna', 'C04p19870' => 'bna', 'C04p59670' => 'bna', 'C05p02460' => 'bna', 'C05p02470' => 'bna', 'C08p00980' => 'bna', 'C08p00990' => 'bna', 'C08p51030' => 'bna', 'C08p52360' => 'bna', 'C09p09120' => 'bna', 'CAN.G19.15' => 'can', 'CAN.G251.10' => 'can', 'CAN.G251.9' => 'can', 'CAN.G398.24' => 'can', 'CAN.G410.32' => 'can', 'CAN.G881.2' => 'can', 'CANSAT01G3025' => 'cansat', 'CANSAT78G1211' => 'cansat', 'CANSAT78G1218' => 'cansat', 'CANSAT78G1521' => 'cansat', 'CANSAT78G1670' => 'cansat', 'CARHR003600' => 'chi', 'CARHR003610' => 'chi', 'CARHR006290' => 'chi', 'CARHR006430' => 'chi', 'CARHR124110' => 'chi', 'CARHR203870' => 'chi', 'CARHR203880' => 'chi', 'CARHR203890' => 'chi', 'CARHR276880' => 'chi', 'Carub.0001s0346' => 'cru', 'Carub.0001s0347' => 'cru', 'Carub.0001s0607' => 'cru', 'Carub.0003s2768' => 'cru', 'Carub.0003s2769' => 'cru', 'Carub.0004s1178' => 'cru', 'Carub.0006s0806' => 'cru', 'Carub.0006s0807' => 'cru', 'Carub.0006s0808' => 'cru', 'Carub.0008s0501' => 'cru', 'Carub.0008s2379' => 'cru', 'Ca_08655_v3' => 'car', 'Ca_08922_v3' => 'car', 'Ca_08923_v3' => 'car', 'Ca_09119_v3' => 'car', 'Ca_09703_v3' => 'car', 'Ca_09705_v3' => 'car', 'Ca_09835_v3' => 'car', 'Ca_26403_v3' => 'car', 'Ca_30719_v3' => 'car', 'CBR_g17958' => 'cbr', 'CBR_g40516' => 'cbr', 'Cc00_g05350' => 'ccan', 'Cc01_g18690' => 'ccan', 'Cc03_g04830' => 'ccan', 'Cc03_g04850' => 'ccan', 'CDE02G4469' => 'cde', 'CDE06G0883' => 'cde', 'CDE06G1295' => 'cde', 'CDE06G1390' => 'cde', 'CDE07G0584' => 'cde', 'CDE07G1084' => 'cde', 'CDE08G1259' => 'cde', 'Cfa002341' => 'cfa', 'Cfa024337' => 'cfa', 'Ciclev10004749m.g' => 'ccl', 'Ciclev10006127m.g' => 'ccl', 'Ciclev10019720m.g' => 'ccl', 'Ciclev10022652m.g' => 'ccl', 'CiPaw.01G190400' => 'cil', 'CiPaw.01G190500' => 'cil', 'CiPaw.02G116400' => 'cil', 'CiPaw.02G116500' => 'cil', 'CiPaw.04G183000' => 'cil', 'CiPaw.04G183300' => 'cil', 'ClCG05G004610' => 'cla', 'ClCG05G004620' => 'cla', 'ClCG06G006730' => 'cla', 'ClCG06G006740' => 'cla', 'ClCG11G003690' => 'cla', 'COL.COLO4_08276' => 'col', 'COL.COLO4_08277' => 'col', 'COL.COLO4_15787' => 'col', 'COL.COLO4_15789' => 'col', 'Cpa.g.c44815' => 'cpa', 'Cpa.g.sc52.144' => 'cpa', 'Cpa.g.sc58.46' => 'cpa', 'Cpa.g.sc58.47' => 'cpa', 'Cre08.g360900' => 'cre', 'CsaV3_2G013030' => 'csa', 'CsaV3_2G013050' => 'csa', 'CsaV3_2G015620' => 'csa', 'CsaV3_3G012590' => 'csa', 'CsaV3_3G012600' => 'csa', 'CSS0001641' => 'camsi', 'CSS0008310' => 'camsi', 'CSS0013011' => 'camsi', 'CSS0017147' => 'camsi', 'CSS0022970' => 'camsi', 'CSS0025655' => 'camsi', 'CSS0028665' => 'camsi', 'CSS0029117' => 'camsi', 'CSS0032024' => 'camsi', 'CSS0039681' => 'camsi', 'CSS0046516' => 'camsi', 'CSS0050307' => 'camsi', 'DCAR_005871' => 'dca', 'DCAR_007342' => 'dca', 'DCAR_024228' => 'dca', 'DCAR_027277' => 'dca', 'DCAR_030718' => 'dca', 'Dinv20287' => 'din', 'Dinv22461' => 'din', 'Dinv22464' => 'din', 'Dinv29912' => 'din', 'Dinv29913' => 'din', 'Dinv34580' => 'din', 'Dinv34582' => 'din', 'Dinv44632' => 'din', 'Duzib052G0266' => 'dzi', 'Duzib133G0907' => 'dzi', 'Duzib133G1034' => 'dzi', 'Duzib138G0207' => 'dzi', 'Duzib138G0491' => 'dzi', 'Duzib151G0812' => 'dzi', 'Duzib151G1166' => 'dzi', 'Duzib168G0192' => 'dzi', 'Duzib211G0077' => 'dzi', 'Duzib212G0429' => 'dzi', 'Duzib212G0472' => 'dzi', 'ECA233G2617' => 'eca', 'ECA236G4188' => 'eca', 'ECA240G0936' => 'eca', 'ECA240G1129' => 'eca', 'ECA247G0623' => 'eca', 'EL10Ac5g10451' => 'bvu', 'EL10Ac5g10453' => 'bvu', 'EL10Ac5g10894' => 'bvu', 'Eucgr.H00192' => 'egr', 'Eucgr.H00193' => 'egr', 'Eucgr.H00194' => 'egr', 'Eucgr.J01562' => 'egr', 'Eucgr.K03301' => 'egr', 'FAN02G0632' => 'fan', 'FAN05G5378' => 'fan', 'FAN09G3247' => 'fan', 'FAN12G0435' => 'fan', 'FAN12G2426' => 'fan', 'FAN14G1707' => 'fan', 'FAN14G4725' => 'fan', 'FAN15G2071' => 'fan', 'FAN17G3065' => 'fan', 'FAN19G1376' => 'fan', 'FAN20G0354' => 'fan', 'FAN20G2429' => 'fan', 'FAN20G2658' => 'fan', 'FAN24G2343' => 'fan', 'FAN27G2362' => 'fan', 'FAN28G1765' => 'fan', 'FvH4_1g16020' => 'fve', 'FvH4_2g04890' => 'fve', 'FvH4_2g22270' => 'fve', 'FvH4_4g02630' => 'fve', 'FvH4_4g02640' => 'fve', 'FvH4_6g02650' => 'fve', 'Glyma.02G140600' => 'gma', 'Glyma.03G159900' => 'gma', 'Glyma.05G234800' => 'gma', 'Glyma.07G269600' => 'gma', 'Glyma.08G042300' => 'gma', 'Glyma.10G033500' => 'gma', 'Glyma.10G185200' => 'gma', 'Glyma.17G004300' => 'gma', 'Glyma.19G161900' => 'gma', 'Glyma.20G205100' => 'gma', 'Glyma.20G205200' => 'gma', 'Gohir.A01G139101' => 'ghi', 'Gohir.A02G035600' => 'ghi', 'Gohir.A02G117901' => 'ghi', 'Gohir.A07G210100' => 'ghi', 'Gohir.A07G210200' => 'ghi', 'Gohir.A08G061100' => 'ghi', 'Gohir.A09G223000' => 'ghi', 'Gohir.A09G223100' => 'ghi', 'Gohir.A10G113900' => 'ghi', 'Gohir.A10G114000' => 'ghi', 'Gohir.D02G042300' => 'ghi', 'Gohir.D07G216100' => 'ghi', 'Gohir.D07G216200' => 'ghi', 'Gohir.D08G070400' => 'ghi', 'Gohir.D09G225000' => 'ghi', 'Gohir.D09G225100' => 'ghi', 'Gohir.D10G152300' => 'ghi', 'Gohir.D10G153200' => 'ghi', 'Gohir.D11G133701' => 'ghi', 'Gorai.004G074100' => 'gra', 'Gorai.005G046800' => 'gra', 'Gorai.006G246500' => 'gra', 'Gorai.006G246600' => 'gra', 'Gorai.007G142900' => 'gra', 'Gorai.011G171000' => 'gra', 'Gorai.011G171100' => 'gra', 'Gorai.013G104300' => 'gra', 'Gorai.013G104400' => 'gra', 'GSVIVG01000754001' => 'vvi', 'GSVIVG01000756001' => 'vvi', 'GSVIVG01010903001' => 'vvi', 'GSVIVG01017623001' => 'vvi', 'GSVIVG01018113001' => 'vvi', 'GSVIVG01018116001' => 'vvi', 'GSVIVG01018118001' => 'vvi', 'HanXRQChr03g0076211' => 'han', 'HanXRQChr03g0092431' => 'han', 'HanXRQChr03g0092441' => 'han', 'HanXRQChr03g0092591' => 'han', 'HanXRQChr03g0092671' => 'han', 'HanXRQChr03g0092681' => 'han', 'HanXRQChr03g0092691' => 'han', 'HanXRQChr03g0092701' => 'han', 'HanXRQChr03g0092721' => 'han', 'HanXRQChr03g0092731' => 'han', 'HanXRQChr04g0113681' => 'han', 'HanXRQChr10g0281371' => 'han', 'HanXRQChr11g0337141' => 'han', 'HanXRQChr13g0424521' => 'han', 'HanXRQChr13g0424531' => 'han', 'HanXRQChr13g0424541' => 'han', 'HanXRQChr16g0498221' => 'han', 'Haze_04377' => 'cav', 'Haze_11298' => 'cav', 'Haze_24547' => 'cav', 'Haze_24550' => 'cav', 'Haze_26587' => 'cav', 'Hma1.2p1_0650F.1_g195410' => 'hma', 'Hma1.2p1_0893F.1_g233470' => 'hma', 'HPP92_006508' => 'vpl', 'HPP92_024780' => 'vpl', 'Hund02688' => 'sun', 'Hund09380' => 'sun', 'Hund09381' => 'sun', 'Hund09832' => 'sun', 'Hund09833' => 'sun', 'Hund11351' => 'sun', 'Hund11513' => 'sun', 'Lalb_Chr06g0162591' => 'lal', 'Lalb_Chr06g0162601' => 'lal', 'Lalb_Chr06g0169321' => 'lal', 'Lalb_Chr09g0330951' => 'lal', 'Lalb_Chr16g0387631' => 'lal', 'Lalb_Chr21g0306241' => 'lal', 'Lalb_Chr25g0290051' => 'lal', 'Lalb_Chr25g0290061' => 'lal', 'Lalb_Chr25g0290071' => 'lal', 'Lj1g0003876' => 'lja', 'Lj1P1207T36' => 'lonja', 'Lj2C1156G12' => 'lonja', 'Lj3A793G39' => 'lonja', 'Lj3C580G2' => 'lonja', 'Lj3C780G2' => 'lonja', 'Lj3C780T4' => 'lonja', 'Lj3C793G9' => 'lonja', 'Lj4g0012960' => 'lja', 'Lj5g0021252' => 'lja', 'Lj5g0021484' => 'lja', 'Lj5g0024528' => 'lja', 'Lj6A399T12' => 'lonja', 'Lj6A656G65' => 'lonja', 'Lsat_1_v5_gn_3_125500' => 'lsa', 'Lsat_1_v5_gn_3_125540' => 'lsa', 'Lsat_1_v5_gn_5_72701' => 'lsa', 'Lsat_1_v5_gn_8_91560' => 'lsa', 'Lsat_1_v5_gn_9_9640' => 'lsa', 'Manes.01G200600' => 'mes', 'Manes.01G200700' => 'mes', 'Manes.03G168900' => 'mes', 'Manes.03G169000' => 'mes', 'Manes.05G085801' => 'mes', 'Manes.05G086200' => 'mes', 'Manes.15G036700' => 'mes', 'Manes.15G036900' => 'mes', 'Mapoly0004s0172' => 'mpo', 'Mapoly0023s0001' => 'mpo', 'Mapoly0142s0012' => 'mpo', 'MBI01_g32854_MAGBIO' => 'mbi', 'MBI11_g24427_MAGBIO' => 'mbi', 'MBI11_g47319_MAGBIO' => 'mbi', 'MCO01G433' => 'mco', 'MD00G1187800' => 'mdo', 'MD04G1226500' => 'mdo', 'MD05G1203900' => 'mdo', 'MD10G1191100' => 'mdo', 'MD12G1243500' => 'mdo', 'MD13G1207000' => 'mdo', 'MD13G1207100' => 'mdo', 'MD16G1208600' => 'mdo', 'Medtr1g050352' => 'mtr', 'Medtr1g070385' => 'mtr', 'Medtr1g070450' => 'mtr', 'Medtr1g075200' => 'mtr', 'Medtr1g075250' => 'mtr', 'Medtr1g075260' => 'mtr', 'Medtr1g475250' => 'mtr', 'Medtr4g075450' => 'mtr', 'Medtr7g096300' => 'mtr', 'Medtr8g105110' => 'mtr', 'MELO3C006470.2' => 'cme', 'MELO3C006471.2' => 'cme', 'MELO3C020772.2' => 'cme', 'MELO3C026780.2' => 'cme', 'MELO3C026781.2' => 'cme', 'Migut.D00390' => 'egut', 'Migut.G00435' => 'egut', 'Migut.G00436' => 'egut', 'Migut.G00718' => 'egut', 'MSTRG.21891' => 'ama', 'MSTRG.26910' => 'ama', 'MSTRG.4099' => 'ama', 'MSTRG.9925' => 'ama', 'Nitab4.5_0000165g0010' => 'nta', 'Nitab4.5_0000209g0180' => 'nta', 'Nitab4.5_0000244g0440' => 'nta', 'Nitab4.5_0000525g0220' => 'nta', 'Nitab4.5_0001597g0020' => 'nta', 'Nitab4.5_0001878g0040' => 'nta', 'Nitab4.5_0001878g0060' => 'nta', 'Nitab4.5_0002838g0100' => 'nta', 'Nitab4.5_0002838g0120' => 'nta', 'Nitab4.5_0004798g0030' => 'nta', 'Nitab4.5_0005420g0010' => 'nta', 'Nitab4.5_0005507g0010' => 'nta', 'Nitab4.5_0005574g0020' => 'nta', 'Nitab4.5_0005838g0010' => 'nta', 'Nitab4.5_0010580g0020' => 'nta', 'Nn1g02599' => 'nnu', 'Nn1g02608' => 'nnu', 'Nn3g17742' => 'nnu', 'Nn3g19534' => 'nnu', 'Nn3g19535' => 'nnu', 'Oeu008790.1' => 'oeu', 'Oeu008792.1' => 'oeu', 'Oeu032590.1' => 'oeu', 'Oeu035349.1' => 'oeu', 'Oeu049791.1' => 'oeu', 'Os01g0774500' => 'osa', 'Os03g0628800' => 'osa', 'Os03g0798600' => 'osa', 'Os05g0508800' => 'osa', 'Peaxi162Scf00036g02018' => 'pax', 'Peaxi162Scf00578g00032' => 'pax', 'Peaxi162Scf00578g00317' => 'pax', 'Peaxi162Scf00785g00114' => 'pax', 'Peaxi162Scf00813g00119' => 'pax', 'Peaxi162Scf00906g00227' => 'pax', 'PGR004G0875' => 'pgr', 'PGR004G2424' => 'pgr', 'PGR031G1239' => 'pgr', 'PGR031G2474' => 'pgr', 'PGR044G0423' => 'pgr', 'PGSC0003DMG400001128' => 'stu', 'PGSC0003DMG400007336' => 'stu', 'PGSC0003DMG400016318' => 'stu', 'PGSC0003DMG400016319' => 'stu', 'PGSC0003DMG400018074' => 'stu', 'Phvul.001G157700' => 'pvu', 'Phvul.002G148550' => 'pvu', 'Phvul.002G320200' => 'pvu', 'Phvul.003G089200' => 'pvu', 'Phvul.007G126000' => 'pvu', 'Phvul.007G126100' => 'pvu', 'Phvul.007G178000' => 'pvu', 'Phvul.007G178200' => 'pvu', 'Potri.002G043000' => 'ptr', 'Potri.002G043200' => 'ptr', 'Potri.003G123750' => 'ptr', 'Potri.005G055401' => 'ptr', 'Potri.005G219700' => 'ptr', 'Potri.005G220000' => 'ptr', 'Potri.008G161901' => 'ptr', 'Potri.008G162000' => 'ptr', 'Potri.008G162400' => 'ptr', 'Potri.010G076900' => 'ptr', 'Pp3c12_9180' => 'ppa', 'Pp3c13_19770' => 'ppa', 'Pp3c14_22950' => 'ppa', 'Pp3c16_12160' => 'ppa', 'Pp3c27_7820' => 'ppa', 'Pp3c2_3490' => 'ppa', 'Pp3c3_23700' => 'ppa', 'Pp3c3_36520' => 'ppa', 'Pp3c4_15250' => 'ppa', 'PRCOL_00007002' => 'pco', 'Prupe.1G030600' => 'ppe', 'Prupe.1G030700' => 'ppe', 'Prupe.6G345200' => 'ppe', 'Prupe.8G230300' => 'ppe', 'Prupe.8G230500' => 'ppe', 'Psat3g059600' => 'psa', 'Psat5g200920' => 'psa', 'Psat6g056440' => 'psa', 'Psat6g057360' => 'psa', 'Psat6g134120' => 'psa', 'Psat6g134160' => 'psa', 'Psat7g008640' => 'psa', 'Psat7g185240' => 'psa', 'PSO017G1330' => 'pso', 'PSO063G6097' => 'pso', 'PSO170G0835' => 'pso', 'PSO170G2499' => 'pso', 'PSO210G5058' => 'pso', 'PSO210G6154' => 'pso', 'PSO585G0031' => 'pso', 'PSO832G0264' => 'pso', 'PSO832G4288' => 'pso', 'QL03p027355' => 'qlo', 'QL03p027430' => 'qlo', 'QL04p081380' => 'qlo', 'QL06p015642' => 'qlo', 'QL06p015650' => 'qlo', 'QL06p015686' => 'qlo', 'QL12p042927' => 'qlo', 'QL93p1863_0035' => 'qlo', 'RcHm_v2.0_Chr3g0450581' => 'rch', 'RcHm_v2.0_Chr4g0390371' => 'rch', 'RcHm_v2.0_Chr4g0390381' => 'rch', 'RcHm_v2.0_Chr4g0390491' => 'rch', 'RcHm_v2.0_Chr4g0390501' => 'rch', 'RcHm_v2.0_Chr6g0289231' => 'rch', 'Rhsim04G0190400' => 'rsi', 'Rhsim04G0190500' => 'rsi', 'Rhsim04G0190600' => 'rsi', 'Rhsim13G0031400' => 'rsi', 'Rhsim13G0165600' => 'rsi', 'RhsimUnG0114600' => 'rsi', 'RhsimUnG0114700' => 'rsi', 'Sabra02G0034800' => 'sbr', 'Sabra02G0035100' => 'sbr', 'Sabra05G0168600' => 'sbr', 'Sabra05G0168800' => 'sbr', 'Sabra08G0123700' => 'sbr', 'Sabra10G0031900' => 'sbr', 'Sabra13G0039000' => 'sbr', 'SalBow2G0782' => 'sbo', 'SalBow2G1403' => 'sbo', 'SalBow4G0074' => 'sbo', 'SalBow4G2635' => 'sbo', 'SalBow5G3010' => 'sbo', 'Sc05g0000870' => 'sci', 'Sc05g0000890' => 'sci', 'Sc13g0005000' => 'sci', 'Sc13g0005030' => 'sci', 'Sc19g0003790' => 'sci', 'Sc19g0003800' => 'sci', 'Sed0003467' => 'sed', 'Sed0009355' => 'sed', 'Sed0009894' => 'sed', 'Sed0011972' => 'sed', 'Sed0021483' => 'sed', 'Sed0021750' => 'sed', 'Sed0026279' => 'sed', 'SEGI_05312' => 'sgi', 'SEGI_10112' => 'sgi', 'SEGI_15835' => 'sgi', 'SEGI_30386' => 'sgi', 'SEGI_34122' => 'sgi', 'SEGI_35063' => 'sgi', 'SGA_v2.0_scaffold101G29794' => 'sas', 'SGA_v2.0_scaffold1G00573' => 'sas', 'SGA_v2.0_scaffold79G25637' => 'sas', 'SGA_v2.0_scaffold88G27283' => 'sas', 'SGA_v2.0_scaffold88G27285' => 'sas', 'SGA_v2.0_scaffold88G27331' => 'sas', 'SHI09937' => 'shi', 'SMO119G0302' => 'smo', 'SMO137G0231' => 'smo', 'SMO367G1151' => 'smo', 'Solyc02g082000.3' => 'sly', 'Solyc06g031670.3' => 'sly', 'Solyc06g053810.3' => 'sly', 'Solyc07g025457.1' => 'sly', 'Solyc08g059740.1' => 'sly', 'Solyc08g059750.3' => 'sly', 'Solyc09g083370.3' => 'sly', 'Solyc12g038950.3' => 'sly', 'Sopen02g026630' => 'spe', 'Sopen06g018930' => 'spe', 'Sopen06g018940' => 'spe', 'Sopen08g009460' => 'spe', 'Sopen09g032290' => 'spe', 'Sp1g03080' => 'spa', 'Sp1g03090' => 'spa', 'Sp1g05480' => 'spa', 'Sp2g07860' => 'spa', 'Sp2g08430' => 'spa', 'Sp2g08440' => 'spa', 'Sp2g26200' => 'spa', 'Sp4g13170' => 'spa', 'Sp6g33840' => 'spa', 'SpUn1204_0010' => 'spa', 'TAR365G0908' => 'tar', 'TAR381G1270' => 'tar', 'TAR381G1651' => 'tar', 'TAR625G1131' => 'tar', 'TAR633G0962' => 'tar', 'TAR633G1729' => 'tar', 'TAR633G1864' => 'tar', 'TAR636G0221' => 'tar', 'TAR636G0314' => 'tar', 'TAR636G3202' => 'tar', 'THA.LOC104800805' => 'tha', 'THA.LOC104801096' => 'tha', 'THA.LOC104801555' => 'tha', 'THA.LOC104808491' => 'tha', 'THA.LOC104808595' => 'tha', 'THA.LOC104815985' => 'tha', 'THA.LOC104822250' => 'tha', 'THA.LOC104826071' => 'tha', 'Thecc.01G265200' => 'tca', 'Thecc.01G265300' => 'tca', 'Thecc.01G265700' => 'tca', 'Thecc.03G109100' => 'tca', 'Thecc.04G245900' => 'tca', 'Thecc.04G246000' => 'tca', 'Thhalv10003334m.g' => 'esa', 'Thhalv10005508m.g' => 'esa', 'Thhalv10005643m.g' => 'esa', 'Thhalv10007316m.g' => 'esa', 'Thhalv10009006m.g' => 'esa', 'Thhalv10009309m.g' => 'esa', 'Thhalv10014917m.g' => 'esa', 'Thhalv10014919m.g' => 'esa', 'Thhalv10015393m.g' => 'esa', 'Thhalv10016515m.g' => 'esa', 'Thhalv10029242m.g' => 'esa', 'TPR.G16654' => 'tpr', 'TPR.G20589' => 'tpr', 'TPR.G23029' => 'tpr', 'TPR.G27731' => 'tpr', 'TPR.G28889' => 'tpr', 'TPR.G28899' => 'tpr', 'TPR.G30846' => 'tpr', 'TPR.G5452' => 'tpr', 'TPR.G5713' => 'tpr', 'TPR.G9046' => 'tpr', 'TPR.G9061' => 'tpr', 'TWI09G1075' => 'twi', 'TWI12G0806' => 'twi', 'TWI18G0108' => 'twi', 'TWI53G1361' => 'twi', 'TWI73G0185' => 'twi', 'TWI73G0427' => 'twi', 'unitig_37.g12001' => 'ugi', 'unitig_747.g21660' => 'ugi', 'unitig_748.g7232' => 'ugi', 'unitig_748.g7315' => 'ugi', 'unitig_85.g27262' => 'ugi', 'unitig_92.g28220' => 'ugi', 'vmacro02632' => 'vma', 'vmacro08410' => 'vma', 'vmacro08411' => 'vma', 'vmacro15407' => 'vma', 'VMungo0251G3619' => 'vmu', 'VMungo0720G1204' => 'vmu', 'VMungo0720G1918' => 'vmu', 'VMungo0720G2387' => 'vmu', 'VMungo0720G2961' => 'vmu', 'VMungo1215G2154' => 'vmu', 'VMungo1383G2411' => 'vmu', 'Zm00001eb051130' => 'zma', 'Zm00001eb116830' => 'zma', 'Zm00001eb116850' => 'zma', 'Zm00001eb151740' => 'zma', 'Zm00001eb292360' => 'zma', 'Zm00001eb301640' => 'zma' ) $gf_id = 'HOM05D000856' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000856' ) $data_identifier = 'HOM05D000856' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 13, 'ath' => (int) 10, 'atr' => (int) 1, 'acertr' => (int) 8, 'cqu' => (int) 6, 'bca' => (int) 21, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 11, 'car' => (int) 9, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 8, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 5, 'fan' => (int) 16, 'fve' => (int) 6, 'gma' => (int) 11, 'ghi' => (int) 19, 'gra' => (int) 9, 'vvi' => (int) 7, 'han' => (int) 17, 'cav' => (int) 5, 'hma' => (int) 2, 'vpl' => (int) 2, 'sun' => (int) 7, 'lal' => (int) 9, 'lja' => (int) 5, 'lonja' => (int) 9, 'lsa' => (int) 5, 'mes' => (int) 8, 'mpo' => (int) 3, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 10, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 15, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 9, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 9, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 6, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 5, 'spa' => (int) 10, 'tar' => (int) 10, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 11, 'tpr' => (int) 11, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 4, 'vmu' => (int) 7, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb301640' $species_info = array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ) $local_species = 'lsa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000856', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p00010' => 'bna', 'A03p04160' => 'bna', 'A03p17160' => 'bna', 'A04p23370' => 'bna', 'A05p14860' => 'bna', 'A08p37020' => 'bna', 'A09p08050' => 'bna', 'A09p66800' => 'bna', 'A09p67940' => 'bna', 'A10p02680' => 'bna', 'A10p05320' => 'bna', 'Aa31LG1G20560' => 'aar', 'Aa31LG1G20610' => 'aar', 'Aa31LG1G7810' => 'aar', 'Aa31LG5G3590' => 'aar', 'Aa31LG5G6140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3819' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4683' => 'aag', 'Actinidia04480' => 'ach', 'Actinidia05466' => 'ach', 'Actinidia08445' => 'ach', 'Actinidia21170' => 'ach', 'Actinidia24812' => 'ach', 'Actinidia24951' => 'ach', 'Actinidia40088' => 'ach', 'Ah.02g111660' => 'amhyb', 'Ah.11g048900' => 'amhyb', 'Ah.11g049910' => 'amhyb', 'AL1G13870' => 'aly', 'AL1G13880' => 'aly', 'AL1G16760' => 'aly', 'AL390U10020' => 'aly', 'AL4G25520' => 'aly', 'AL6G19890' => 'aly', 'AL6G19900' => 'aly', 'AL6G19910' => 'aly', 'AL8G40100' => 'aly', 'Aqoxy2G03562' => 'aox', 'Aqoxy5G00316' => 'aox', 'Aqoxy5G00926' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1628KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1H403S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2FU6SJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.882I6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8YRY2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YN1SN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AF70II' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZA8L1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F916KL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHRD8H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KTZ8QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S22EMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8M29T' => 'arhy', 'AT1G04270' => 'ath', 'AT1G04280' => 'ath', 'AT1G06750' => 'ath', 'AT1G33850' => 'ath', 'AT2G30630' => 'ath', 'AT5G09490' => 'ath', 'AT5G09500' => 'ath', 'AT5G09510' => 'ath', 'AT5G43640' => 'ath', 'AT5G63070' => 'ath', 'ATR0605G315' => 'atr', 'Atru.chr11.175' => 'acertr', 'Atru.chr11.653' => 'acertr', 'Atru.chr3.1616' => 'acertr', 'Atru.chr4.2230' => 'acertr', 'Atru.chr4.2232' => 'acertr', 'Atru.chr5.1598' => 'acertr', 'Atru.chr5.1600' => 'acertr', 'Atru.chr5.2188' => 'acertr', 'AUR62008326' => 'cqu', 'AUR62011922' => 'cqu', 'AUR62011924' => 'cqu', 'AUR62021771' => 'cqu', 'AUR62032237' => 'cqu', 'AUR62032240' => 'cqu', 'BcaB01g05572' => 'bca', 'BcaB02g10337' => 'bca', 'BcaB04g19944' => 'bca', 'BcaB05g21548' => 'bca', 'BcaB05g21549' => 'bca', 'BcaB05g23227' => 'bca', 'BcaB06g26256' => 'bca', 'BcaB06g26257' => 'bca', 'BcaB06g28379' => 'bca', 'BcaC02g11159' => 'bca', 'BcaC03g13258' => 'bca', 'BcaC03g13259' => 'bca', 'BcaC05g24456' => 'bca', 'BcaC05g24457' => 'bca', 'BcaC07g36922' => 'bca', 'BcaC07g36923' => 'bca', 'BcaC07g42050' => 'bca', 'BcaC07g42176' => 'bca', 'BcaC07g42195' => 'bca', 'BcaC07g42196' => 'bca', 'BcaNung06674' => 'bca', 'BolC2t06351H' => 'bol', 'BolC2t06352H' => 'bol', 'BolC3t12993H' => 'bol', 'BolC4t23525H' => 'bol', 'BolC4t27475H' => 'bol', 'BolC5t29025H' => 'bol', 'BolC5t29026H' => 'bol', 'BolC8t46898H' => 'bol', 'BolC8t46899H' => 'bol', 'BolC8t52630H' => 'bol', 'BolC8t52765H' => 'bol', 'BolC9t53824H' => 'bol', 'BraA03t09760Z' => 'bra', 'BraA03t10990Z' => 'bra', 'BraA05t20413Z' => 'bra', 'BraA08t35602Z' => 'bra', 'BraA09t36458Z' => 'bra', 'BraA09t42018Z' => 'bra', 'BraA09t42129Z' => 'bra', 'BraA10t42536Z' => 'bra', 'BraA10t42537Z' => 'bra', 'C01p10690' => 'bna', 'C02p03890' => 'bna', 'C02p03900' => 'bna', 'C03p04620' => 'bna', 'C04p19870' => 'bna', 'C04p59670' => 'bna', 'C05p02460' => 'bna', 'C05p02470' => 'bna', 'C08p00980' => 'bna', 'C08p00990' => 'bna', 'C08p51030' => 'bna', 'C08p52360' => 'bna', 'C09p09120' => 'bna', 'CAN.G19.15' => 'can', 'CAN.G251.10' => 'can', 'CAN.G251.9' => 'can', 'CAN.G398.24' => 'can', 'CAN.G410.32' => 'can', 'CAN.G881.2' => 'can', 'CANSAT01G3025' => 'cansat', 'CANSAT78G1211' => 'cansat', 'CANSAT78G1218' => 'cansat', 'CANSAT78G1521' => 'cansat', 'CANSAT78G1670' => 'cansat', 'CARHR003600' => 'chi', 'CARHR003610' => 'chi', 'CARHR006290' => 'chi', 'CARHR006430' => 'chi', 'CARHR124110' => 'chi', 'CARHR203870' => 'chi', 'CARHR203880' => 'chi', 'CARHR203890' => 'chi', 'CARHR276880' => 'chi', 'Carub.0001s0346' => 'cru', 'Carub.0001s0347' => 'cru', 'Carub.0001s0607' => 'cru', 'Carub.0003s2768' => 'cru', 'Carub.0003s2769' => 'cru', 'Carub.0004s1178' => 'cru', 'Carub.0006s0806' => 'cru', 'Carub.0006s0807' => 'cru', 'Carub.0006s0808' => 'cru', 'Carub.0008s0501' => 'cru', 'Carub.0008s2379' => 'cru', 'Ca_08655_v3' => 'car', 'Ca_08922_v3' => 'car', 'Ca_08923_v3' => 'car', 'Ca_09119_v3' => 'car', 'Ca_09703_v3' => 'car', 'Ca_09705_v3' => 'car', 'Ca_09835_v3' => 'car', 'Ca_26403_v3' => 'car', 'Ca_30719_v3' => 'car', 'CBR_g17958' => 'cbr', 'CBR_g40516' => 'cbr', 'Cc00_g05350' => 'ccan', 'Cc01_g18690' => 'ccan', 'Cc03_g04830' => 'ccan', 'Cc03_g04850' => 'ccan', 'CDE02G4469' => 'cde', 'CDE06G0883' => 'cde', 'CDE06G1295' => 'cde', 'CDE06G1390' => 'cde', 'CDE07G0584' => 'cde', 'CDE07G1084' => 'cde', 'CDE08G1259' => 'cde', 'Cfa002341' => 'cfa', 'Cfa024337' => 'cfa', 'Ciclev10004749m.g' => 'ccl', 'Ciclev10006127m.g' => 'ccl', 'Ciclev10019720m.g' => 'ccl', 'Ciclev10022652m.g' => 'ccl', 'CiPaw.01G190400' => 'cil', 'CiPaw.01G190500' => 'cil', 'CiPaw.02G116400' => 'cil', 'CiPaw.02G116500' => 'cil', 'CiPaw.04G183000' => 'cil', 'CiPaw.04G183300' => 'cil', 'ClCG05G004610' => 'cla', 'ClCG05G004620' => 'cla', 'ClCG06G006730' => 'cla', 'ClCG06G006740' => 'cla', 'ClCG11G003690' => 'cla', 'COL.COLO4_08276' => 'col', 'COL.COLO4_08277' => 'col', 'COL.COLO4_15787' => 'col', 'COL.COLO4_15789' => 'col', 'Cpa.g.c44815' => 'cpa', 'Cpa.g.sc52.144' => 'cpa', 'Cpa.g.sc58.46' => 'cpa', 'Cpa.g.sc58.47' => 'cpa', 'Cre08.g360900' => 'cre', 'CsaV3_2G013030' => 'csa', 'CsaV3_2G013050' => 'csa', 'CsaV3_2G015620' => 'csa', 'CsaV3_3G012590' => 'csa', 'CsaV3_3G012600' => 'csa', 'CSS0001641' => 'camsi', 'CSS0008310' => 'camsi', 'CSS0013011' => 'camsi', 'CSS0017147' => 'camsi', 'CSS0022970' => 'camsi', 'CSS0025655' => 'camsi', 'CSS0028665' => 'camsi', 'CSS0029117' => 'camsi', 'CSS0032024' => 'camsi', 'CSS0039681' => 'camsi', 'CSS0046516' => 'camsi', 'CSS0050307' => 'camsi', 'DCAR_005871' => 'dca', 'DCAR_007342' => 'dca', 'DCAR_024228' => 'dca', 'DCAR_027277' => 'dca', 'DCAR_030718' => 'dca', 'Dinv20287' => 'din', 'Dinv22461' => 'din', 'Dinv22464' => 'din', 'Dinv29912' => 'din', 'Dinv29913' => 'din', 'Dinv34580' => 'din', 'Dinv34582' => 'din', 'Dinv44632' => 'din', 'Duzib052G0266' => 'dzi', 'Duzib133G0907' => 'dzi', 'Duzib133G1034' => 'dzi', 'Duzib138G0207' => 'dzi', 'Duzib138G0491' => 'dzi', 'Duzib151G0812' => 'dzi', 'Duzib151G1166' => 'dzi', 'Duzib168G0192' => 'dzi', 'Duzib211G0077' => 'dzi', 'Duzib212G0429' => 'dzi', 'Duzib212G0472' => 'dzi', 'ECA233G2617' => 'eca', 'ECA236G4188' => 'eca', 'ECA240G0936' => 'eca', 'ECA240G1129' => 'eca', 'ECA247G0623' => 'eca', 'EL10Ac5g10451' => 'bvu', 'EL10Ac5g10453' => 'bvu', 'EL10Ac5g10894' => 'bvu', 'Eucgr.H00192' => 'egr', 'Eucgr.H00193' => 'egr', 'Eucgr.H00194' => 'egr', 'Eucgr.J01562' => 'egr', 'Eucgr.K03301' => 'egr', 'FAN02G0632' => 'fan', 'FAN05G5378' => 'fan', 'FAN09G3247' => 'fan', 'FAN12G0435' => 'fan', 'FAN12G2426' => 'fan', 'FAN14G1707' => 'fan', 'FAN14G4725' => 'fan', 'FAN15G2071' => 'fan', 'FAN17G3065' => 'fan', 'FAN19G1376' => 'fan', 'FAN20G0354' => 'fan', 'FAN20G2429' => 'fan', 'FAN20G2658' => 'fan', 'FAN24G2343' => 'fan', 'FAN27G2362' => 'fan', 'FAN28G1765' => 'fan', 'FvH4_1g16020' => 'fve', 'FvH4_2g04890' => 'fve', 'FvH4_2g22270' => 'fve', 'FvH4_4g02630' => 'fve', 'FvH4_4g02640' => 'fve', 'FvH4_6g02650' => 'fve', 'Glyma.02G140600' => 'gma', 'Glyma.03G159900' => 'gma', 'Glyma.05G234800' => 'gma', 'Glyma.07G269600' => 'gma', 'Glyma.08G042300' => 'gma', 'Glyma.10G033500' => 'gma', 'Glyma.10G185200' => 'gma', 'Glyma.17G004300' => 'gma', 'Glyma.19G161900' => 'gma', 'Glyma.20G205100' => 'gma', 'Glyma.20G205200' => 'gma', 'Gohir.A01G139101' => 'ghi', 'Gohir.A02G035600' => 'ghi', 'Gohir.A02G117901' => 'ghi', 'Gohir.A07G210100' => 'ghi', 'Gohir.A07G210200' => 'ghi', 'Gohir.A08G061100' => 'ghi', 'Gohir.A09G223000' => 'ghi', 'Gohir.A09G223100' => 'ghi', 'Gohir.A10G113900' => 'ghi', 'Gohir.A10G114000' => 'ghi', 'Gohir.D02G042300' => 'ghi', 'Gohir.D07G216100' => 'ghi', 'Gohir.D07G216200' => 'ghi', 'Gohir.D08G070400' => 'ghi', 'Gohir.D09G225000' => 'ghi', 'Gohir.D09G225100' => 'ghi', 'Gohir.D10G152300' => 'ghi', 'Gohir.D10G153200' => 'ghi', 'Gohir.D11G133701' => 'ghi', 'Gorai.004G074100' => 'gra', 'Gorai.005G046800' => 'gra', 'Gorai.006G246500' => 'gra', 'Gorai.006G246600' => 'gra', 'Gorai.007G142900' => 'gra', 'Gorai.011G171000' => 'gra', 'Gorai.011G171100' => 'gra', 'Gorai.013G104300' => 'gra', 'Gorai.013G104400' => 'gra', 'GSVIVG01000754001' => 'vvi', 'GSVIVG01000756001' => 'vvi', 'GSVIVG01010903001' => 'vvi', 'GSVIVG01017623001' => 'vvi', 'GSVIVG01018113001' => 'vvi', 'GSVIVG01018116001' => 'vvi', 'GSVIVG01018118001' => 'vvi', 'HanXRQChr03g0076211' => 'han', 'HanXRQChr03g0092431' => 'han', 'HanXRQChr03g0092441' => 'han', 'HanXRQChr03g0092591' => 'han', 'HanXRQChr03g0092671' => 'han', 'HanXRQChr03g0092681' => 'han', 'HanXRQChr03g0092691' => 'han', 'HanXRQChr03g0092701' => 'han', 'HanXRQChr03g0092721' => 'han', 'HanXRQChr03g0092731' => 'han', 'HanXRQChr04g0113681' => 'han', 'HanXRQChr10g0281371' => 'han', 'HanXRQChr11g0337141' => 'han', 'HanXRQChr13g0424521' => 'han', 'HanXRQChr13g0424531' => 'han', 'HanXRQChr13g0424541' => 'han', 'HanXRQChr16g0498221' => 'han', 'Haze_04377' => 'cav', 'Haze_11298' => 'cav', 'Haze_24547' => 'cav', 'Haze_24550' => 'cav', 'Haze_26587' => 'cav', 'Hma1.2p1_0650F.1_g195410' => 'hma', 'Hma1.2p1_0893F.1_g233470' => 'hma', 'HPP92_006508' => 'vpl', 'HPP92_024780' => 'vpl', 'Hund02688' => 'sun', 'Hund09380' => 'sun', 'Hund09381' => 'sun', 'Hund09832' => 'sun', 'Hund09833' => 'sun', 'Hund11351' => 'sun', 'Hund11513' => 'sun', 'Lalb_Chr06g0162591' => 'lal', 'Lalb_Chr06g0162601' => 'lal', 'Lalb_Chr06g0169321' => 'lal', 'Lalb_Chr09g0330951' => 'lal', 'Lalb_Chr16g0387631' => 'lal', 'Lalb_Chr21g0306241' => 'lal', 'Lalb_Chr25g0290051' => 'lal', 'Lalb_Chr25g0290061' => 'lal', 'Lalb_Chr25g0290071' => 'lal', 'Lj1g0003876' => 'lja', 'Lj1P1207T36' => 'lonja', 'Lj2C1156G12' => 'lonja', 'Lj3A793G39' => 'lonja', 'Lj3C580G2' => 'lonja', 'Lj3C780G2' => 'lonja', 'Lj3C780T4' => 'lonja', 'Lj3C793G9' => 'lonja', 'Lj4g0012960' => 'lja', 'Lj5g0021252' => 'lja', 'Lj5g0021484' => 'lja', 'Lj5g0024528' => 'lja', 'Lj6A399T12' => 'lonja', 'Lj6A656G65' => 'lonja', 'Lsat_1_v5_gn_3_125500' => 'lsa', 'Lsat_1_v5_gn_3_125540' => 'lsa', 'Lsat_1_v5_gn_5_72701' => 'lsa', 'Lsat_1_v5_gn_8_91560' => 'lsa', 'Lsat_1_v5_gn_9_9640' => 'lsa', 'Manes.01G200600' => 'mes', 'Manes.01G200700' => 'mes', 'Manes.03G168900' => 'mes', 'Manes.03G169000' => 'mes', 'Manes.05G085801' => 'mes', 'Manes.05G086200' => 'mes', 'Manes.15G036700' => 'mes', 'Manes.15G036900' => 'mes', 'Mapoly0004s0172' => 'mpo', 'Mapoly0023s0001' => 'mpo', 'Mapoly0142s0012' => 'mpo', 'MBI01_g32854_MAGBIO' => 'mbi', 'MBI11_g24427_MAGBIO' => 'mbi', 'MBI11_g47319_MAGBIO' => 'mbi', 'MCO01G433' => 'mco', 'MD00G1187800' => 'mdo', 'MD04G1226500' => 'mdo', 'MD05G1203900' => 'mdo', 'MD10G1191100' => 'mdo', 'MD12G1243500' => 'mdo', 'MD13G1207000' => 'mdo', 'MD13G1207100' => 'mdo', 'MD16G1208600' => 'mdo', 'Medtr1g050352' => 'mtr', 'Medtr1g070385' => 'mtr', 'Medtr1g070450' => 'mtr', 'Medtr1g075200' => 'mtr', 'Medtr1g075250' => 'mtr', 'Medtr1g075260' => 'mtr', 'Medtr1g475250' => 'mtr', 'Medtr4g075450' => 'mtr', 'Medtr7g096300' => 'mtr', 'Medtr8g105110' => 'mtr', 'MELO3C006470.2' => 'cme', 'MELO3C006471.2' => 'cme', 'MELO3C020772.2' => 'cme', 'MELO3C026780.2' => 'cme', 'MELO3C026781.2' => 'cme', 'Migut.D00390' => 'egut', 'Migut.G00435' => 'egut', 'Migut.G00436' => 'egut', 'Migut.G00718' => 'egut', 'MSTRG.21891' => 'ama', 'MSTRG.26910' => 'ama', 'MSTRG.4099' => 'ama', 'MSTRG.9925' => 'ama', 'Nitab4.5_0000165g0010' => 'nta', 'Nitab4.5_0000209g0180' => 'nta', 'Nitab4.5_0000244g0440' => 'nta', 'Nitab4.5_0000525g0220' => 'nta', 'Nitab4.5_0001597g0020' => 'nta', 'Nitab4.5_0001878g0040' => 'nta', 'Nitab4.5_0001878g0060' => 'nta', 'Nitab4.5_0002838g0100' => 'nta', 'Nitab4.5_0002838g0120' => 'nta', 'Nitab4.5_0004798g0030' => 'nta', 'Nitab4.5_0005420g0010' => 'nta', 'Nitab4.5_0005507g0010' => 'nta', 'Nitab4.5_0005574g0020' => 'nta', 'Nitab4.5_0005838g0010' => 'nta', 'Nitab4.5_0010580g0020' => 'nta', 'Nn1g02599' => 'nnu', 'Nn1g02608' => 'nnu', 'Nn3g17742' => 'nnu', 'Nn3g19534' => 'nnu', 'Nn3g19535' => 'nnu', 'Oeu008790.1' => 'oeu', 'Oeu008792.1' => 'oeu', 'Oeu032590.1' => 'oeu', 'Oeu035349.1' => 'oeu', 'Oeu049791.1' => 'oeu', 'Os01g0774500' => 'osa', 'Os03g0628800' => 'osa', 'Os03g0798600' => 'osa', 'Os05g0508800' => 'osa', 'Peaxi162Scf00036g02018' => 'pax', 'Peaxi162Scf00578g00032' => 'pax', 'Peaxi162Scf00578g00317' => 'pax', 'Peaxi162Scf00785g00114' => 'pax', 'Peaxi162Scf00813g00119' => 'pax', 'Peaxi162Scf00906g00227' => 'pax', 'PGR004G0875' => 'pgr', 'PGR004G2424' => 'pgr', 'PGR031G1239' => 'pgr', 'PGR031G2474' => 'pgr', 'PGR044G0423' => 'pgr', 'PGSC0003DMG400001128' => 'stu', 'PGSC0003DMG400007336' => 'stu', 'PGSC0003DMG400016318' => 'stu', 'PGSC0003DMG400016319' => 'stu', 'PGSC0003DMG400018074' => 'stu', 'Phvul.001G157700' => 'pvu', 'Phvul.002G148550' => 'pvu', 'Phvul.002G320200' => 'pvu', 'Phvul.003G089200' => 'pvu', 'Phvul.007G126000' => 'pvu', 'Phvul.007G126100' => 'pvu', 'Phvul.007G178000' => 'pvu', 'Phvul.007G178200' => 'pvu', 'Potri.002G043000' => 'ptr', 'Potri.002G043200' => 'ptr', 'Potri.003G123750' => 'ptr', 'Potri.005G055401' => 'ptr', 'Potri.005G219700' => 'ptr', 'Potri.005G220000' => 'ptr', 'Potri.008G161901' => 'ptr', 'Potri.008G162000' => 'ptr', 'Potri.008G162400' => 'ptr', 'Potri.010G076900' => 'ptr', 'Pp3c12_9180' => 'ppa', 'Pp3c13_19770' => 'ppa', 'Pp3c14_22950' => 'ppa', 'Pp3c16_12160' => 'ppa', 'Pp3c27_7820' => 'ppa', 'Pp3c2_3490' => 'ppa', 'Pp3c3_23700' => 'ppa', 'Pp3c3_36520' => 'ppa', 'Pp3c4_15250' => 'ppa', 'PRCOL_00007002' => 'pco', 'Prupe.1G030600' => 'ppe', 'Prupe.1G030700' => 'ppe', 'Prupe.6G345200' => 'ppe', 'Prupe.8G230300' => 'ppe', 'Prupe.8G230500' => 'ppe', 'Psat3g059600' => 'psa', 'Psat5g200920' => 'psa', 'Psat6g056440' => 'psa', 'Psat6g057360' => 'psa', 'Psat6g134120' => 'psa', 'Psat6g134160' => 'psa', 'Psat7g008640' => 'psa', 'Psat7g185240' => 'psa', 'PSO017G1330' => 'pso', 'PSO063G6097' => 'pso', 'PSO170G0835' => 'pso', 'PSO170G2499' => 'pso', 'PSO210G5058' => 'pso', 'PSO210G6154' => 'pso', 'PSO585G0031' => 'pso', 'PSO832G0264' => 'pso', 'PSO832G4288' => 'pso', 'QL03p027355' => 'qlo', 'QL03p027430' => 'qlo', 'QL04p081380' => 'qlo', 'QL06p015642' => 'qlo', 'QL06p015650' => 'qlo', 'QL06p015686' => 'qlo', 'QL12p042927' => 'qlo', 'QL93p1863_0035' => 'qlo', 'RcHm_v2.0_Chr3g0450581' => 'rch', 'RcHm_v2.0_Chr4g0390371' => 'rch', 'RcHm_v2.0_Chr4g0390381' => 'rch', 'RcHm_v2.0_Chr4g0390491' => 'rch', 'RcHm_v2.0_Chr4g0390501' => 'rch', 'RcHm_v2.0_Chr6g0289231' => 'rch', 'Rhsim04G0190400' => 'rsi', 'Rhsim04G0190500' => 'rsi', 'Rhsim04G0190600' => 'rsi', 'Rhsim13G0031400' => 'rsi', 'Rhsim13G0165600' => 'rsi', 'RhsimUnG0114600' => 'rsi', 'RhsimUnG0114700' => 'rsi', 'Sabra02G0034800' => 'sbr', 'Sabra02G0035100' => 'sbr', 'Sabra05G0168600' => 'sbr', 'Sabra05G0168800' => 'sbr', 'Sabra08G0123700' => 'sbr', 'Sabra10G0031900' => 'sbr', 'Sabra13G0039000' => 'sbr', 'SalBow2G0782' => 'sbo', 'SalBow2G1403' => 'sbo', 'SalBow4G0074' => 'sbo', 'SalBow4G2635' => 'sbo', 'SalBow5G3010' => 'sbo', 'Sc05g0000870' => 'sci', 'Sc05g0000890' => 'sci', 'Sc13g0005000' => 'sci', 'Sc13g0005030' => 'sci', 'Sc19g0003790' => 'sci', 'Sc19g0003800' => 'sci', 'Sed0003467' => 'sed', 'Sed0009355' => 'sed', 'Sed0009894' => 'sed', 'Sed0011972' => 'sed', 'Sed0021483' => 'sed', 'Sed0021750' => 'sed', 'Sed0026279' => 'sed', 'SEGI_05312' => 'sgi', 'SEGI_10112' => 'sgi', 'SEGI_15835' => 'sgi', 'SEGI_30386' => 'sgi', 'SEGI_34122' => 'sgi', 'SEGI_35063' => 'sgi', 'SGA_v2.0_scaffold101G29794' => 'sas', 'SGA_v2.0_scaffold1G00573' => 'sas', 'SGA_v2.0_scaffold79G25637' => 'sas', 'SGA_v2.0_scaffold88G27283' => 'sas', 'SGA_v2.0_scaffold88G27285' => 'sas', 'SGA_v2.0_scaffold88G27331' => 'sas', 'SHI09937' => 'shi', 'SMO119G0302' => 'smo', 'SMO137G0231' => 'smo', 'SMO367G1151' => 'smo', 'Solyc02g082000.3' => 'sly', 'Solyc06g031670.3' => 'sly', 'Solyc06g053810.3' => 'sly', 'Solyc07g025457.1' => 'sly', 'Solyc08g059740.1' => 'sly', 'Solyc08g059750.3' => 'sly', 'Solyc09g083370.3' => 'sly', 'Solyc12g038950.3' => 'sly', 'Sopen02g026630' => 'spe', 'Sopen06g018930' => 'spe', 'Sopen06g018940' => 'spe', 'Sopen08g009460' => 'spe', 'Sopen09g032290' => 'spe', 'Sp1g03080' => 'spa', 'Sp1g03090' => 'spa', 'Sp1g05480' => 'spa', 'Sp2g07860' => 'spa', 'Sp2g08430' => 'spa', 'Sp2g08440' => 'spa', 'Sp2g26200' => 'spa', 'Sp4g13170' => 'spa', 'Sp6g33840' => 'spa', 'SpUn1204_0010' => 'spa', 'TAR365G0908' => 'tar', 'TAR381G1270' => 'tar', 'TAR381G1651' => 'tar', 'TAR625G1131' => 'tar', 'TAR633G0962' => 'tar', 'TAR633G1729' => 'tar', 'TAR633G1864' => 'tar', 'TAR636G0221' => 'tar', 'TAR636G0314' => 'tar', 'TAR636G3202' => 'tar', 'THA.LOC104800805' => 'tha', 'THA.LOC104801096' => 'tha', 'THA.LOC104801555' => 'tha', 'THA.LOC104808491' => 'tha', 'THA.LOC104808595' => 'tha', 'THA.LOC104815985' => 'tha', 'THA.LOC104822250' => 'tha', 'THA.LOC104826071' => 'tha', 'Thecc.01G265200' => 'tca', 'Thecc.01G265300' => 'tca', 'Thecc.01G265700' => 'tca', 'Thecc.03G109100' => 'tca', 'Thecc.04G245900' => 'tca', 'Thecc.04G246000' => 'tca', 'Thhalv10003334m.g' => 'esa', 'Thhalv10005508m.g' => 'esa', 'Thhalv10005643m.g' => 'esa', 'Thhalv10007316m.g' => 'esa', 'Thhalv10009006m.g' => 'esa', 'Thhalv10009309m.g' => 'esa', 'Thhalv10014917m.g' => 'esa', 'Thhalv10014919m.g' => 'esa', 'Thhalv10015393m.g' => 'esa', 'Thhalv10016515m.g' => 'esa', 'Thhalv10029242m.g' => 'esa', 'TPR.G16654' => 'tpr', 'TPR.G20589' => 'tpr', 'TPR.G23029' => 'tpr', 'TPR.G27731' => 'tpr', 'TPR.G28889' => 'tpr', 'TPR.G28899' => 'tpr', 'TPR.G30846' => 'tpr', 'TPR.G5452' => 'tpr', 'TPR.G5713' => 'tpr', 'TPR.G9046' => 'tpr', 'TPR.G9061' => 'tpr', 'TWI09G1075' => 'twi', 'TWI12G0806' => 'twi', 'TWI18G0108' => 'twi', 'TWI53G1361' => 'twi', 'TWI73G0185' => 'twi', 'TWI73G0427' => 'twi', 'unitig_37.g12001' => 'ugi', 'unitig_747.g21660' => 'ugi', 'unitig_748.g7232' => 'ugi', 'unitig_748.g7315' => 'ugi', 'unitig_85.g27262' => 'ugi', 'unitig_92.g28220' => 'ugi', 'vmacro02632' => 'vma', 'vmacro08410' => 'vma', 'vmacro08411' => 'vma', 'vmacro15407' => 'vma', 'VMungo0251G3619' => 'vmu', 'VMungo0720G1204' => 'vmu', 'VMungo0720G1918' => 'vmu', 'VMungo0720G2387' => 'vmu', 'VMungo0720G2961' => 'vmu', 'VMungo1215G2154' => 'vmu', 'VMungo1383G2411' => 'vmu', 'Zm00001eb051130' => 'zma', 'Zm00001eb116830' => 'zma', 'Zm00001eb116850' => 'zma', 'Zm00001eb151740' => 'zma', 'Zm00001eb292360' => 'zma', 'Zm00001eb301640' => 'zma' ), 'gf_id' => 'HOM05D000856', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000856' ), 'data_identifier' => 'HOM05D000856', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000856', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p00010' => 'bna', 'A03p04160' => 'bna', 'A03p17160' => 'bna', 'A04p23370' => 'bna', 'A05p14860' => 'bna', 'A08p37020' => 'bna', 'A09p08050' => 'bna', 'A09p66800' => 'bna', 'A09p67940' => 'bna', 'A10p02680' => 'bna', 'A10p05320' => 'bna', 'Aa31LG1G20560' => 'aar', 'Aa31LG1G20610' => 'aar', 'Aa31LG1G7810' => 'aar', 'Aa31LG5G3590' => 'aar', 'Aa31LG5G6140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3819' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4683' => 'aag', 'Actinidia04480' => 'ach', 'Actinidia05466' => 'ach', 'Actinidia08445' => 'ach', 'Actinidia21170' => 'ach', 'Actinidia24812' => 'ach', 'Actinidia24951' => 'ach', 'Actinidia40088' => 'ach', 'Ah.02g111660' => 'amhyb', 'Ah.11g048900' => 'amhyb', 'Ah.11g049910' => 'amhyb', 'AL1G13870' => 'aly', 'AL1G13880' => 'aly', 'AL1G16760' => 'aly', 'AL390U10020' => 'aly', 'AL4G25520' => 'aly', 'AL6G19890' => 'aly', 'AL6G19900' => 'aly', 'AL6G19910' => 'aly', 'AL8G40100' => 'aly', 'Aqoxy2G03562' => 'aox', 'Aqoxy5G00316' => 'aox', 'Aqoxy5G00926' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1628KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1H403S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2FU6SJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.882I6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8YRY2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YN1SN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AF70II' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZA8L1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F916KL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHRD8H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KTZ8QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S22EMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8M29T' => 'arhy', 'AT1G04270' => 'ath', 'AT1G04280' => 'ath', 'AT1G06750' => 'ath', 'AT1G33850' => 'ath', 'AT2G30630' => 'ath', 'AT5G09490' => 'ath', 'AT5G09500' => 'ath', 'AT5G09510' => 'ath', 'AT5G43640' => 'ath', 'AT5G63070' => 'ath', 'ATR0605G315' => 'atr', 'Atru.chr11.175' => 'acertr', 'Atru.chr11.653' => 'acertr', 'Atru.chr3.1616' => 'acertr', 'Atru.chr4.2230' => 'acertr', 'Atru.chr4.2232' => 'acertr', 'Atru.chr5.1598' => 'acertr', 'Atru.chr5.1600' => 'acertr', 'Atru.chr5.2188' => 'acertr', 'AUR62008326' => 'cqu', 'AUR62011922' => 'cqu', 'AUR62011924' => 'cqu', 'AUR62021771' => 'cqu', 'AUR62032237' => 'cqu', 'AUR62032240' => 'cqu', 'BcaB01g05572' => 'bca', 'BcaB02g10337' => 'bca', 'BcaB04g19944' => 'bca', 'BcaB05g21548' => 'bca', 'BcaB05g21549' => 'bca', 'BcaB05g23227' => 'bca', 'BcaB06g26256' => 'bca', 'BcaB06g26257' => 'bca', 'BcaB06g28379' => 'bca', 'BcaC02g11159' => 'bca', 'BcaC03g13258' => 'bca', 'BcaC03g13259' => 'bca', 'BcaC05g24456' => 'bca', 'BcaC05g24457' => 'bca', 'BcaC07g36922' => 'bca', 'BcaC07g36923' => 'bca', 'BcaC07g42050' => 'bca', 'BcaC07g42176' => 'bca', 'BcaC07g42195' => 'bca', 'BcaC07g42196' => 'bca', 'BcaNung06674' => 'bca', 'BolC2t06351H' => 'bol', 'BolC2t06352H' => 'bol', 'BolC3t12993H' => 'bol', 'BolC4t23525H' => 'bol', 'BolC4t27475H' => 'bol', 'BolC5t29025H' => 'bol', 'BolC5t29026H' => 'bol', 'BolC8t46898H' => 'bol', 'BolC8t46899H' => 'bol', 'BolC8t52630H' => 'bol', 'BolC8t52765H' => 'bol', 'BolC9t53824H' => 'bol', 'BraA03t09760Z' => 'bra', 'BraA03t10990Z' => 'bra', 'BraA05t20413Z' => 'bra', 'BraA08t35602Z' => 'bra', 'BraA09t36458Z' => 'bra', 'BraA09t42018Z' => 'bra', 'BraA09t42129Z' => 'bra', 'BraA10t42536Z' => 'bra', 'BraA10t42537Z' => 'bra', 'C01p10690' => 'bna', 'C02p03890' => 'bna', 'C02p03900' => 'bna', 'C03p04620' => 'bna', 'C04p19870' => 'bna', 'C04p59670' => 'bna', 'C05p02460' => 'bna', 'C05p02470' => 'bna', 'C08p00980' => 'bna', 'C08p00990' => 'bna', 'C08p51030' => 'bna', 'C08p52360' => 'bna', 'C09p09120' => 'bna', 'CAN.G19.15' => 'can', 'CAN.G251.10' => 'can', 'CAN.G251.9' => 'can', 'CAN.G398.24' => 'can', 'CAN.G410.32' => 'can', 'CAN.G881.2' => 'can', 'CANSAT01G3025' => 'cansat', 'CANSAT78G1211' => 'cansat', 'CANSAT78G1218' => 'cansat', 'CANSAT78G1521' => 'cansat', 'CANSAT78G1670' => 'cansat', 'CARHR003600' => 'chi', 'CARHR003610' => 'chi', 'CARHR006290' => 'chi', 'CARHR006430' => 'chi', 'CARHR124110' => 'chi', 'CARHR203870' => 'chi', 'CARHR203880' => 'chi', 'CARHR203890' => 'chi', 'CARHR276880' => 'chi', 'Carub.0001s0346' => 'cru', 'Carub.0001s0347' => 'cru', 'Carub.0001s0607' => 'cru', 'Carub.0003s2768' => 'cru', 'Carub.0003s2769' => 'cru', 'Carub.0004s1178' => 'cru', 'Carub.0006s0806' => 'cru', 'Carub.0006s0807' => 'cru', 'Carub.0006s0808' => 'cru', 'Carub.0008s0501' => 'cru', 'Carub.0008s2379' => 'cru', 'Ca_08655_v3' => 'car', 'Ca_08922_v3' => 'car', 'Ca_08923_v3' => 'car', 'Ca_09119_v3' => 'car', 'Ca_09703_v3' => 'car', 'Ca_09705_v3' => 'car', 'Ca_09835_v3' => 'car', 'Ca_26403_v3' => 'car', 'Ca_30719_v3' => 'car', 'CBR_g17958' => 'cbr', 'CBR_g40516' => 'cbr', 'Cc00_g05350' => 'ccan', 'Cc01_g18690' => 'ccan', 'Cc03_g04830' => 'ccan', 'Cc03_g04850' => 'ccan', 'CDE02G4469' => 'cde', 'CDE06G0883' => 'cde', 'CDE06G1295' => 'cde', 'CDE06G1390' => 'cde', 'CDE07G0584' => 'cde', 'CDE07G1084' => 'cde', 'CDE08G1259' => 'cde', 'Cfa002341' => 'cfa', 'Cfa024337' => 'cfa', 'Ciclev10004749m.g' => 'ccl', 'Ciclev10006127m.g' => 'ccl', 'Ciclev10019720m.g' => 'ccl', 'Ciclev10022652m.g' => 'ccl', 'CiPaw.01G190400' => 'cil', 'CiPaw.01G190500' => 'cil', 'CiPaw.02G116400' => 'cil', 'CiPaw.02G116500' => 'cil', 'CiPaw.04G183000' => 'cil', 'CiPaw.04G183300' => 'cil', 'ClCG05G004610' => 'cla', 'ClCG05G004620' => 'cla', 'ClCG06G006730' => 'cla', 'ClCG06G006740' => 'cla', 'ClCG11G003690' => 'cla', 'COL.COLO4_08276' => 'col', 'COL.COLO4_08277' => 'col', 'COL.COLO4_15787' => 'col', 'COL.COLO4_15789' => 'col', 'Cpa.g.c44815' => 'cpa', 'Cpa.g.sc52.144' => 'cpa', 'Cpa.g.sc58.46' => 'cpa', 'Cpa.g.sc58.47' => 'cpa', 'Cre08.g360900' => 'cre', 'CsaV3_2G013030' => 'csa', 'CsaV3_2G013050' => 'csa', 'CsaV3_2G015620' => 'csa', 'CsaV3_3G012590' => 'csa', 'CsaV3_3G012600' => 'csa', 'CSS0001641' => 'camsi', 'CSS0008310' => 'camsi', 'CSS0013011' => 'camsi', 'CSS0017147' => 'camsi', 'CSS0022970' => 'camsi', 'CSS0025655' => 'camsi', 'CSS0028665' => 'camsi', 'CSS0029117' => 'camsi', 'CSS0032024' => 'camsi', 'CSS0039681' => 'camsi', 'CSS0046516' => 'camsi', 'CSS0050307' => 'camsi', 'DCAR_005871' => 'dca', 'DCAR_007342' => 'dca', 'DCAR_024228' => 'dca', 'DCAR_027277' => 'dca', 'DCAR_030718' => 'dca', 'Dinv20287' => 'din', 'Dinv22461' => 'din', 'Dinv22464' => 'din', 'Dinv29912' => 'din', 'Dinv29913' => 'din', 'Dinv34580' => 'din', 'Dinv34582' => 'din', 'Dinv44632' => 'din', 'Duzib052G0266' => 'dzi', 'Duzib133G0907' => 'dzi', 'Duzib133G1034' => 'dzi', 'Duzib138G0207' => 'dzi', 'Duzib138G0491' => 'dzi', 'Duzib151G0812' => 'dzi', 'Duzib151G1166' => 'dzi', 'Duzib168G0192' => 'dzi', 'Duzib211G0077' => 'dzi', 'Duzib212G0429' => 'dzi', 'Duzib212G0472' => 'dzi', 'ECA233G2617' => 'eca', 'ECA236G4188' => 'eca', 'ECA240G0936' => 'eca', 'ECA240G1129' => 'eca', 'ECA247G0623' => 'eca', 'EL10Ac5g10451' => 'bvu', 'EL10Ac5g10453' => 'bvu', 'EL10Ac5g10894' => 'bvu', 'Eucgr.H00192' => 'egr', 'Eucgr.H00193' => 'egr', 'Eucgr.H00194' => 'egr', 'Eucgr.J01562' => 'egr', 'Eucgr.K03301' => 'egr', 'FAN02G0632' => 'fan', 'FAN05G5378' => 'fan', 'FAN09G3247' => 'fan', 'FAN12G0435' => 'fan', 'FAN12G2426' => 'fan', 'FAN14G1707' => 'fan', 'FAN14G4725' => 'fan', 'FAN15G2071' => 'fan', 'FAN17G3065' => 'fan', 'FAN19G1376' => 'fan', 'FAN20G0354' => 'fan', 'FAN20G2429' => 'fan', 'FAN20G2658' => 'fan', 'FAN24G2343' => 'fan', 'FAN27G2362' => 'fan', 'FAN28G1765' => 'fan', 'FvH4_1g16020' => 'fve', 'FvH4_2g04890' => 'fve', 'FvH4_2g22270' => 'fve', 'FvH4_4g02630' => 'fve', 'FvH4_4g02640' => 'fve', 'FvH4_6g02650' => 'fve', 'Glyma.02G140600' => 'gma', 'Glyma.03G159900' => 'gma', 'Glyma.05G234800' => 'gma', 'Glyma.07G269600' => 'gma', 'Glyma.08G042300' => 'gma', 'Glyma.10G033500' => 'gma', 'Glyma.10G185200' => 'gma', 'Glyma.17G004300' => 'gma', 'Glyma.19G161900' => 'gma', 'Glyma.20G205100' => 'gma', 'Glyma.20G205200' => 'gma', 'Gohir.A01G139101' => 'ghi', 'Gohir.A02G035600' => 'ghi', 'Gohir.A02G117901' => 'ghi', 'Gohir.A07G210100' => 'ghi', 'Gohir.A07G210200' => 'ghi', 'Gohir.A08G061100' => 'ghi', 'Gohir.A09G223000' => 'ghi', 'Gohir.A09G223100' => 'ghi', 'Gohir.A10G113900' => 'ghi', 'Gohir.A10G114000' => 'ghi', 'Gohir.D02G042300' => 'ghi', 'Gohir.D07G216100' => 'ghi', 'Gohir.D07G216200' => 'ghi', 'Gohir.D08G070400' => 'ghi', 'Gohir.D09G225000' => 'ghi', 'Gohir.D09G225100' => 'ghi', 'Gohir.D10G152300' => 'ghi', 'Gohir.D10G153200' => 'ghi', 'Gohir.D11G133701' => 'ghi', 'Gorai.004G074100' => 'gra', 'Gorai.005G046800' => 'gra', 'Gorai.006G246500' => 'gra', 'Gorai.006G246600' => 'gra', 'Gorai.007G142900' => 'gra', 'Gorai.011G171000' => 'gra', 'Gorai.011G171100' => 'gra', 'Gorai.013G104300' => 'gra', 'Gorai.013G104400' => 'gra', 'GSVIVG01000754001' => 'vvi', 'GSVIVG01000756001' => 'vvi', 'GSVIVG01010903001' => 'vvi', 'GSVIVG01017623001' => 'vvi', 'GSVIVG01018113001' => 'vvi', 'GSVIVG01018116001' => 'vvi', 'GSVIVG01018118001' => 'vvi', 'HanXRQChr03g0076211' => 'han', 'HanXRQChr03g0092431' => 'han', 'HanXRQChr03g0092441' => 'han', 'HanXRQChr03g0092591' => 'han', 'HanXRQChr03g0092671' => 'han', 'HanXRQChr03g0092681' => 'han', 'HanXRQChr03g0092691' => 'han', 'HanXRQChr03g0092701' => 'han', 'HanXRQChr03g0092721' => 'han', 'HanXRQChr03g0092731' => 'han', 'HanXRQChr04g0113681' => 'han', 'HanXRQChr10g0281371' => 'han', 'HanXRQChr11g0337141' => 'han', 'HanXRQChr13g0424521' => 'han', 'HanXRQChr13g0424531' => 'han', 'HanXRQChr13g0424541' => 'han', 'HanXRQChr16g0498221' => 'han', 'Haze_04377' => 'cav', 'Haze_11298' => 'cav', 'Haze_24547' => 'cav', 'Haze_24550' => 'cav', 'Haze_26587' => 'cav', 'Hma1.2p1_0650F.1_g195410' => 'hma', 'Hma1.2p1_0893F.1_g233470' => 'hma', 'HPP92_006508' => 'vpl', 'HPP92_024780' => 'vpl', 'Hund02688' => 'sun', 'Hund09380' => 'sun', 'Hund09381' => 'sun', 'Hund09832' => 'sun', 'Hund09833' => 'sun', 'Hund11351' => 'sun', 'Hund11513' => 'sun', 'Lalb_Chr06g0162591' => 'lal', 'Lalb_Chr06g0162601' => 'lal', 'Lalb_Chr06g0169321' => 'lal', 'Lalb_Chr09g0330951' => 'lal', 'Lalb_Chr16g0387631' => 'lal', 'Lalb_Chr21g0306241' => 'lal', 'Lalb_Chr25g0290051' => 'lal', 'Lalb_Chr25g0290061' => 'lal', 'Lalb_Chr25g0290071' => 'lal', 'Lj1g0003876' => 'lja', 'Lj1P1207T36' => 'lonja', 'Lj2C1156G12' => 'lonja', 'Lj3A793G39' => 'lonja', 'Lj3C580G2' => 'lonja', 'Lj3C780G2' => 'lonja', 'Lj3C780T4' => 'lonja', 'Lj3C793G9' => 'lonja', 'Lj4g0012960' => 'lja', 'Lj5g0021252' => 'lja', 'Lj5g0021484' => 'lja', 'Lj5g0024528' => 'lja', 'Lj6A399T12' => 'lonja', 'Lj6A656G65' => 'lonja', 'Lsat_1_v5_gn_3_125500' => 'lsa', 'Lsat_1_v5_gn_3_125540' => 'lsa', 'Lsat_1_v5_gn_5_72701' => 'lsa', 'Lsat_1_v5_gn_8_91560' => 'lsa', 'Lsat_1_v5_gn_9_9640' => 'lsa', 'Manes.01G200600' => 'mes', 'Manes.01G200700' => 'mes', 'Manes.03G168900' => 'mes', 'Manes.03G169000' => 'mes', 'Manes.05G085801' => 'mes', 'Manes.05G086200' => 'mes', 'Manes.15G036700' => 'mes', 'Manes.15G036900' => 'mes', 'Mapoly0004s0172' => 'mpo', 'Mapoly0023s0001' => 'mpo', 'Mapoly0142s0012' => 'mpo', 'MBI01_g32854_MAGBIO' => 'mbi', 'MBI11_g24427_MAGBIO' => 'mbi', 'MBI11_g47319_MAGBIO' => 'mbi', 'MCO01G433' => 'mco', 'MD00G1187800' => 'mdo', 'MD04G1226500' => 'mdo', 'MD05G1203900' => 'mdo', 'MD10G1191100' => 'mdo', 'MD12G1243500' => 'mdo', 'MD13G1207000' => 'mdo', 'MD13G1207100' => 'mdo', 'MD16G1208600' => 'mdo', 'Medtr1g050352' => 'mtr', 'Medtr1g070385' => 'mtr', 'Medtr1g070450' => 'mtr', 'Medtr1g075200' => 'mtr', 'Medtr1g075250' => 'mtr', 'Medtr1g075260' => 'mtr', 'Medtr1g475250' => 'mtr', 'Medtr4g075450' => 'mtr', 'Medtr7g096300' => 'mtr', 'Medtr8g105110' => 'mtr', 'MELO3C006470.2' => 'cme', 'MELO3C006471.2' => 'cme', 'MELO3C020772.2' => 'cme', 'MELO3C026780.2' => 'cme', 'MELO3C026781.2' => 'cme', 'Migut.D00390' => 'egut', 'Migut.G00435' => 'egut', 'Migut.G00436' => 'egut', 'Migut.G00718' => 'egut', 'MSTRG.21891' => 'ama', 'MSTRG.26910' => 'ama', 'MSTRG.4099' => 'ama', 'MSTRG.9925' => 'ama', 'Nitab4.5_0000165g0010' => 'nta', 'Nitab4.5_0000209g0180' => 'nta', 'Nitab4.5_0000244g0440' => 'nta', 'Nitab4.5_0000525g0220' => 'nta', 'Nitab4.5_0001597g0020' => 'nta', 'Nitab4.5_0001878g0040' => 'nta', 'Nitab4.5_0001878g0060' => 'nta', 'Nitab4.5_0002838g0100' => 'nta', 'Nitab4.5_0002838g0120' => 'nta', 'Nitab4.5_0004798g0030' => 'nta', 'Nitab4.5_0005420g0010' => 'nta', 'Nitab4.5_0005507g0010' => 'nta', 'Nitab4.5_0005574g0020' => 'nta', 'Nitab4.5_0005838g0010' => 'nta', 'Nitab4.5_0010580g0020' => 'nta', 'Nn1g02599' => 'nnu', 'Nn1g02608' => 'nnu', 'Nn3g17742' => 'nnu', 'Nn3g19534' => 'nnu', 'Nn3g19535' => 'nnu', 'Oeu008790.1' => 'oeu', 'Oeu008792.1' => 'oeu', 'Oeu032590.1' => 'oeu', 'Oeu035349.1' => 'oeu', 'Oeu049791.1' => 'oeu', 'Os01g0774500' => 'osa', 'Os03g0628800' => 'osa', 'Os03g0798600' => 'osa', 'Os05g0508800' => 'osa', 'Peaxi162Scf00036g02018' => 'pax', 'Peaxi162Scf00578g00032' => 'pax', 'Peaxi162Scf00578g00317' => 'pax', 'Peaxi162Scf00785g00114' => 'pax', 'Peaxi162Scf00813g00119' => 'pax', 'Peaxi162Scf00906g00227' => 'pax', 'PGR004G0875' => 'pgr', 'PGR004G2424' => 'pgr', 'PGR031G1239' => 'pgr', 'PGR031G2474' => 'pgr', 'PGR044G0423' => 'pgr', 'PGSC0003DMG400001128' => 'stu', 'PGSC0003DMG400007336' => 'stu', 'PGSC0003DMG400016318' => 'stu', 'PGSC0003DMG400016319' => 'stu', 'PGSC0003DMG400018074' => 'stu', 'Phvul.001G157700' => 'pvu', 'Phvul.002G148550' => 'pvu', 'Phvul.002G320200' => 'pvu', 'Phvul.003G089200' => 'pvu', 'Phvul.007G126000' => 'pvu', 'Phvul.007G126100' => 'pvu', 'Phvul.007G178000' => 'pvu', 'Phvul.007G178200' => 'pvu', 'Potri.002G043000' => 'ptr', 'Potri.002G043200' => 'ptr', 'Potri.003G123750' => 'ptr', 'Potri.005G055401' => 'ptr', 'Potri.005G219700' => 'ptr', 'Potri.005G220000' => 'ptr', 'Potri.008G161901' => 'ptr', 'Potri.008G162000' => 'ptr', 'Potri.008G162400' => 'ptr', 'Potri.010G076900' => 'ptr', 'Pp3c12_9180' => 'ppa', 'Pp3c13_19770' => 'ppa', 'Pp3c14_22950' => 'ppa', 'Pp3c16_12160' => 'ppa', 'Pp3c27_7820' => 'ppa', 'Pp3c2_3490' => 'ppa', 'Pp3c3_23700' => 'ppa', 'Pp3c3_36520' => 'ppa', 'Pp3c4_15250' => 'ppa', 'PRCOL_00007002' => 'pco', 'Prupe.1G030600' => 'ppe', 'Prupe.1G030700' => 'ppe', 'Prupe.6G345200' => 'ppe', 'Prupe.8G230300' => 'ppe', 'Prupe.8G230500' => 'ppe', 'Psat3g059600' => 'psa', 'Psat5g200920' => 'psa', 'Psat6g056440' => 'psa', 'Psat6g057360' => 'psa', 'Psat6g134120' => 'psa', 'Psat6g134160' => 'psa', 'Psat7g008640' => 'psa', 'Psat7g185240' => 'psa', 'PSO017G1330' => 'pso', 'PSO063G6097' => 'pso', 'PSO170G0835' => 'pso', 'PSO170G2499' => 'pso', 'PSO210G5058' => 'pso', 'PSO210G6154' => 'pso', 'PSO585G0031' => 'pso', 'PSO832G0264' => 'pso', 'PSO832G4288' => 'pso', 'QL03p027355' => 'qlo', 'QL03p027430' => 'qlo', 'QL04p081380' => 'qlo', 'QL06p015642' => 'qlo', 'QL06p015650' => 'qlo', 'QL06p015686' => 'qlo', 'QL12p042927' => 'qlo', 'QL93p1863_0035' => 'qlo', 'RcHm_v2.0_Chr3g0450581' => 'rch', 'RcHm_v2.0_Chr4g0390371' => 'rch', 'RcHm_v2.0_Chr4g0390381' => 'rch', 'RcHm_v2.0_Chr4g0390491' => 'rch', 'RcHm_v2.0_Chr4g0390501' => 'rch', 'RcHm_v2.0_Chr6g0289231' => 'rch', 'Rhsim04G0190400' => 'rsi', 'Rhsim04G0190500' => 'rsi', 'Rhsim04G0190600' => 'rsi', 'Rhsim13G0031400' => 'rsi', 'Rhsim13G0165600' => 'rsi', 'RhsimUnG0114600' => 'rsi', 'RhsimUnG0114700' => 'rsi', 'Sabra02G0034800' => 'sbr', 'Sabra02G0035100' => 'sbr', 'Sabra05G0168600' => 'sbr', 'Sabra05G0168800' => 'sbr', 'Sabra08G0123700' => 'sbr', 'Sabra10G0031900' => 'sbr', 'Sabra13G0039000' => 'sbr', 'SalBow2G0782' => 'sbo', 'SalBow2G1403' => 'sbo', 'SalBow4G0074' => 'sbo', 'SalBow4G2635' => 'sbo', 'SalBow5G3010' => 'sbo', 'Sc05g0000870' => 'sci', 'Sc05g0000890' => 'sci', 'Sc13g0005000' => 'sci', 'Sc13g0005030' => 'sci', 'Sc19g0003790' => 'sci', 'Sc19g0003800' => 'sci', 'Sed0003467' => 'sed', 'Sed0009355' => 'sed', 'Sed0009894' => 'sed', 'Sed0011972' => 'sed', 'Sed0021483' => 'sed', 'Sed0021750' => 'sed', 'Sed0026279' => 'sed', 'SEGI_05312' => 'sgi', 'SEGI_10112' => 'sgi', 'SEGI_15835' => 'sgi', 'SEGI_30386' => 'sgi', 'SEGI_34122' => 'sgi', 'SEGI_35063' => 'sgi', 'SGA_v2.0_scaffold101G29794' => 'sas', 'SGA_v2.0_scaffold1G00573' => 'sas', 'SGA_v2.0_scaffold79G25637' => 'sas', 'SGA_v2.0_scaffold88G27283' => 'sas', 'SGA_v2.0_scaffold88G27285' => 'sas', 'SGA_v2.0_scaffold88G27331' => 'sas', 'SHI09937' => 'shi', 'SMO119G0302' => 'smo', 'SMO137G0231' => 'smo', 'SMO367G1151' => 'smo', 'Solyc02g082000.3' => 'sly', 'Solyc06g031670.3' => 'sly', 'Solyc06g053810.3' => 'sly', 'Solyc07g025457.1' => 'sly', 'Solyc08g059740.1' => 'sly', 'Solyc08g059750.3' => 'sly', 'Solyc09g083370.3' => 'sly', 'Solyc12g038950.3' => 'sly', 'Sopen02g026630' => 'spe', 'Sopen06g018930' => 'spe', 'Sopen06g018940' => 'spe', 'Sopen08g009460' => 'spe', 'Sopen09g032290' => 'spe', 'Sp1g03080' => 'spa', 'Sp1g03090' => 'spa', 'Sp1g05480' => 'spa', 'Sp2g07860' => 'spa', 'Sp2g08430' => 'spa', 'Sp2g08440' => 'spa', 'Sp2g26200' => 'spa', 'Sp4g13170' => 'spa', 'Sp6g33840' => 'spa', 'SpUn1204_0010' => 'spa', 'TAR365G0908' => 'tar', 'TAR381G1270' => 'tar', 'TAR381G1651' => 'tar', 'TAR625G1131' => 'tar', 'TAR633G0962' => 'tar', 'TAR633G1729' => 'tar', 'TAR633G1864' => 'tar', 'TAR636G0221' => 'tar', 'TAR636G0314' => 'tar', 'TAR636G3202' => 'tar', 'THA.LOC104800805' => 'tha', 'THA.LOC104801096' => 'tha', 'THA.LOC104801555' => 'tha', 'THA.LOC104808491' => 'tha', 'THA.LOC104808595' => 'tha', 'THA.LOC104815985' => 'tha', 'THA.LOC104822250' => 'tha', 'THA.LOC104826071' => 'tha', 'Thecc.01G265200' => 'tca', 'Thecc.01G265300' => 'tca', 'Thecc.01G265700' => 'tca', 'Thecc.03G109100' => 'tca', 'Thecc.04G245900' => 'tca', 'Thecc.04G246000' => 'tca', 'Thhalv10003334m.g' => 'esa', 'Thhalv10005508m.g' => 'esa', 'Thhalv10005643m.g' => 'esa', 'Thhalv10007316m.g' => 'esa', 'Thhalv10009006m.g' => 'esa', 'Thhalv10009309m.g' => 'esa', 'Thhalv10014917m.g' => 'esa', 'Thhalv10014919m.g' => 'esa', 'Thhalv10015393m.g' => 'esa', 'Thhalv10016515m.g' => 'esa', 'Thhalv10029242m.g' => 'esa', 'TPR.G16654' => 'tpr', 'TPR.G20589' => 'tpr', 'TPR.G23029' => 'tpr', 'TPR.G27731' => 'tpr', 'TPR.G28889' => 'tpr', 'TPR.G28899' => 'tpr', 'TPR.G30846' => 'tpr', 'TPR.G5452' => 'tpr', 'TPR.G5713' => 'tpr', 'TPR.G9046' => 'tpr', 'TPR.G9061' => 'tpr', 'TWI09G1075' => 'twi', 'TWI12G0806' => 'twi', 'TWI18G0108' => 'twi', 'TWI53G1361' => 'twi', 'TWI73G0185' => 'twi', 'TWI73G0427' => 'twi', 'unitig_37.g12001' => 'ugi', 'unitig_747.g21660' => 'ugi', 'unitig_748.g7232' => 'ugi', 'unitig_748.g7315' => 'ugi', 'unitig_85.g27262' => 'ugi', 'unitig_92.g28220' => 'ugi', 'vmacro02632' => 'vma', 'vmacro08410' => 'vma', 'vmacro08411' => 'vma', 'vmacro15407' => 'vma', 'VMungo0251G3619' => 'vmu', 'VMungo0720G1204' => 'vmu', 'VMungo0720G1918' => 'vmu', 'VMungo0720G2387' => 'vmu', 'VMungo0720G2961' => 'vmu', 'VMungo1215G2154' => 'vmu', 'VMungo1383G2411' => 'vmu', 'Zm00001eb051130' => 'zma', 'Zm00001eb116830' => 'zma', 'Zm00001eb116850' => 'zma', 'Zm00001eb151740' => 'zma', 'Zm00001eb292360' => 'zma', 'Zm00001eb301640' => 'zma' ) $gf_id = 'HOM05D000856' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000856' ) $data_identifier = 'HOM05D000856' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 13, 'ath' => (int) 10, 'atr' => (int) 1, 'acertr' => (int) 8, 'cqu' => (int) 6, 'bca' => (int) 21, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 11, 'car' => (int) 9, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 8, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 5, 'fan' => (int) 16, 'fve' => (int) 6, 'gma' => (int) 11, 'ghi' => (int) 19, 'gra' => (int) 9, 'vvi' => (int) 7, 'han' => (int) 17, 'cav' => (int) 5, 'hma' => (int) 2, 'vpl' => (int) 2, 'sun' => (int) 7, 'lal' => (int) 9, 'lja' => (int) 5, 'lonja' => (int) 9, 'lsa' => (int) 5, 'mes' => (int) 8, 'mpo' => (int) 3, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 10, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 15, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 9, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 9, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 6, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 5, 'spa' => (int) 10, 'tar' => (int) 10, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 11, 'tpr' => (int) 11, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 4, 'vmu' => (int) 7, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb301640' $species_info = array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ) $local_species = 'lsa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000856', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p00010' => 'bna', 'A03p04160' => 'bna', 'A03p17160' => 'bna', 'A04p23370' => 'bna', 'A05p14860' => 'bna', 'A08p37020' => 'bna', 'A09p08050' => 'bna', 'A09p66800' => 'bna', 'A09p67940' => 'bna', 'A10p02680' => 'bna', 'A10p05320' => 'bna', 'Aa31LG1G20560' => 'aar', 'Aa31LG1G20610' => 'aar', 'Aa31LG1G7810' => 'aar', 'Aa31LG5G3590' => 'aar', 'Aa31LG5G6140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3819' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4683' => 'aag', 'Actinidia04480' => 'ach', 'Actinidia05466' => 'ach', 'Actinidia08445' => 'ach', 'Actinidia21170' => 'ach', 'Actinidia24812' => 'ach', 'Actinidia24951' => 'ach', 'Actinidia40088' => 'ach', 'Ah.02g111660' => 'amhyb', 'Ah.11g048900' => 'amhyb', 'Ah.11g049910' => 'amhyb', 'AL1G13870' => 'aly', 'AL1G13880' => 'aly', 'AL1G16760' => 'aly', 'AL390U10020' => 'aly', 'AL4G25520' => 'aly', 'AL6G19890' => 'aly', 'AL6G19900' => 'aly', 'AL6G19910' => 'aly', 'AL8G40100' => 'aly', 'Aqoxy2G03562' => 'aox', 'Aqoxy5G00316' => 'aox', 'Aqoxy5G00926' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1628KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1H403S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2FU6SJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.882I6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8YRY2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YN1SN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AF70II' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZA8L1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F916KL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHRD8H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KTZ8QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S22EMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8M29T' => 'arhy', 'AT1G04270' => 'ath', 'AT1G04280' => 'ath', 'AT1G06750' => 'ath', 'AT1G33850' => 'ath', 'AT2G30630' => 'ath', 'AT5G09490' => 'ath', 'AT5G09500' => 'ath', 'AT5G09510' => 'ath', 'AT5G43640' => 'ath', 'AT5G63070' => 'ath', 'ATR0605G315' => 'atr', 'Atru.chr11.175' => 'acertr', 'Atru.chr11.653' => 'acertr', 'Atru.chr3.1616' => 'acertr', 'Atru.chr4.2230' => 'acertr', 'Atru.chr4.2232' => 'acertr', 'Atru.chr5.1598' => 'acertr', 'Atru.chr5.1600' => 'acertr', 'Atru.chr5.2188' => 'acertr', 'AUR62008326' => 'cqu', 'AUR62011922' => 'cqu', 'AUR62011924' => 'cqu', 'AUR62021771' => 'cqu', 'AUR62032237' => 'cqu', 'AUR62032240' => 'cqu', 'BcaB01g05572' => 'bca', 'BcaB02g10337' => 'bca', 'BcaB04g19944' => 'bca', 'BcaB05g21548' => 'bca', 'BcaB05g21549' => 'bca', 'BcaB05g23227' => 'bca', 'BcaB06g26256' => 'bca', 'BcaB06g26257' => 'bca', 'BcaB06g28379' => 'bca', 'BcaC02g11159' => 'bca', 'BcaC03g13258' => 'bca', 'BcaC03g13259' => 'bca', 'BcaC05g24456' => 'bca', 'BcaC05g24457' => 'bca', 'BcaC07g36922' => 'bca', 'BcaC07g36923' => 'bca', 'BcaC07g42050' => 'bca', 'BcaC07g42176' => 'bca', 'BcaC07g42195' => 'bca', 'BcaC07g42196' => 'bca', 'BcaNung06674' => 'bca', 'BolC2t06351H' => 'bol', 'BolC2t06352H' => 'bol', 'BolC3t12993H' => 'bol', 'BolC4t23525H' => 'bol', 'BolC4t27475H' => 'bol', 'BolC5t29025H' => 'bol', 'BolC5t29026H' => 'bol', 'BolC8t46898H' => 'bol', 'BolC8t46899H' => 'bol', 'BolC8t52630H' => 'bol', 'BolC8t52765H' => 'bol', 'BolC9t53824H' => 'bol', 'BraA03t09760Z' => 'bra', 'BraA03t10990Z' => 'bra', 'BraA05t20413Z' => 'bra', 'BraA08t35602Z' => 'bra', 'BraA09t36458Z' => 'bra', 'BraA09t42018Z' => 'bra', 'BraA09t42129Z' => 'bra', 'BraA10t42536Z' => 'bra', 'BraA10t42537Z' => 'bra', 'C01p10690' => 'bna', 'C02p03890' => 'bna', 'C02p03900' => 'bna', 'C03p04620' => 'bna', 'C04p19870' => 'bna', 'C04p59670' => 'bna', 'C05p02460' => 'bna', 'C05p02470' => 'bna', 'C08p00980' => 'bna', 'C08p00990' => 'bna', 'C08p51030' => 'bna', 'C08p52360' => 'bna', 'C09p09120' => 'bna', 'CAN.G19.15' => 'can', 'CAN.G251.10' => 'can', 'CAN.G251.9' => 'can', 'CAN.G398.24' => 'can', 'CAN.G410.32' => 'can', 'CAN.G881.2' => 'can', 'CANSAT01G3025' => 'cansat', 'CANSAT78G1211' => 'cansat', 'CANSAT78G1218' => 'cansat', 'CANSAT78G1521' => 'cansat', 'CANSAT78G1670' => 'cansat', 'CARHR003600' => 'chi', 'CARHR003610' => 'chi', 'CARHR006290' => 'chi', 'CARHR006430' => 'chi', 'CARHR124110' => 'chi', 'CARHR203870' => 'chi', 'CARHR203880' => 'chi', 'CARHR203890' => 'chi', 'CARHR276880' => 'chi', 'Carub.0001s0346' => 'cru', 'Carub.0001s0347' => 'cru', 'Carub.0001s0607' => 'cru', 'Carub.0003s2768' => 'cru', 'Carub.0003s2769' => 'cru', 'Carub.0004s1178' => 'cru', 'Carub.0006s0806' => 'cru', 'Carub.0006s0807' => 'cru', 'Carub.0006s0808' => 'cru', 'Carub.0008s0501' => 'cru', 'Carub.0008s2379' => 'cru', 'Ca_08655_v3' => 'car', 'Ca_08922_v3' => 'car', 'Ca_08923_v3' => 'car', 'Ca_09119_v3' => 'car', 'Ca_09703_v3' => 'car', 'Ca_09705_v3' => 'car', 'Ca_09835_v3' => 'car', 'Ca_26403_v3' => 'car', 'Ca_30719_v3' => 'car', 'CBR_g17958' => 'cbr', 'CBR_g40516' => 'cbr', 'Cc00_g05350' => 'ccan', 'Cc01_g18690' => 'ccan', 'Cc03_g04830' => 'ccan', 'Cc03_g04850' => 'ccan', 'CDE02G4469' => 'cde', 'CDE06G0883' => 'cde', 'CDE06G1295' => 'cde', 'CDE06G1390' => 'cde', 'CDE07G0584' => 'cde', 'CDE07G1084' => 'cde', 'CDE08G1259' => 'cde', 'Cfa002341' => 'cfa', 'Cfa024337' => 'cfa', 'Ciclev10004749m.g' => 'ccl', 'Ciclev10006127m.g' => 'ccl', 'Ciclev10019720m.g' => 'ccl', 'Ciclev10022652m.g' => 'ccl', 'CiPaw.01G190400' => 'cil', 'CiPaw.01G190500' => 'cil', 'CiPaw.02G116400' => 'cil', 'CiPaw.02G116500' => 'cil', 'CiPaw.04G183000' => 'cil', 'CiPaw.04G183300' => 'cil', 'ClCG05G004610' => 'cla', 'ClCG05G004620' => 'cla', 'ClCG06G006730' => 'cla', 'ClCG06G006740' => 'cla', 'ClCG11G003690' => 'cla', 'COL.COLO4_08276' => 'col', 'COL.COLO4_08277' => 'col', 'COL.COLO4_15787' => 'col', 'COL.COLO4_15789' => 'col', 'Cpa.g.c44815' => 'cpa', 'Cpa.g.sc52.144' => 'cpa', 'Cpa.g.sc58.46' => 'cpa', 'Cpa.g.sc58.47' => 'cpa', 'Cre08.g360900' => 'cre', 'CsaV3_2G013030' => 'csa', 'CsaV3_2G013050' => 'csa', 'CsaV3_2G015620' => 'csa', 'CsaV3_3G012590' => 'csa', 'CsaV3_3G012600' => 'csa', 'CSS0001641' => 'camsi', 'CSS0008310' => 'camsi', 'CSS0013011' => 'camsi', 'CSS0017147' => 'camsi', 'CSS0022970' => 'camsi', 'CSS0025655' => 'camsi', 'CSS0028665' => 'camsi', 'CSS0029117' => 'camsi', 'CSS0032024' => 'camsi', 'CSS0039681' => 'camsi', 'CSS0046516' => 'camsi', 'CSS0050307' => 'camsi', 'DCAR_005871' => 'dca', 'DCAR_007342' => 'dca', 'DCAR_024228' => 'dca', 'DCAR_027277' => 'dca', 'DCAR_030718' => 'dca', 'Dinv20287' => 'din', 'Dinv22461' => 'din', 'Dinv22464' => 'din', 'Dinv29912' => 'din', 'Dinv29913' => 'din', 'Dinv34580' => 'din', 'Dinv34582' => 'din', 'Dinv44632' => 'din', 'Duzib052G0266' => 'dzi', 'Duzib133G0907' => 'dzi', 'Duzib133G1034' => 'dzi', 'Duzib138G0207' => 'dzi', 'Duzib138G0491' => 'dzi', 'Duzib151G0812' => 'dzi', 'Duzib151G1166' => 'dzi', 'Duzib168G0192' => 'dzi', 'Duzib211G0077' => 'dzi', 'Duzib212G0429' => 'dzi', 'Duzib212G0472' => 'dzi', 'ECA233G2617' => 'eca', 'ECA236G4188' => 'eca', 'ECA240G0936' => 'eca', 'ECA240G1129' => 'eca', 'ECA247G0623' => 'eca', 'EL10Ac5g10451' => 'bvu', 'EL10Ac5g10453' => 'bvu', 'EL10Ac5g10894' => 'bvu', 'Eucgr.H00192' => 'egr', 'Eucgr.H00193' => 'egr', 'Eucgr.H00194' => 'egr', 'Eucgr.J01562' => 'egr', 'Eucgr.K03301' => 'egr', 'FAN02G0632' => 'fan', 'FAN05G5378' => 'fan', 'FAN09G3247' => 'fan', 'FAN12G0435' => 'fan', 'FAN12G2426' => 'fan', 'FAN14G1707' => 'fan', 'FAN14G4725' => 'fan', 'FAN15G2071' => 'fan', 'FAN17G3065' => 'fan', 'FAN19G1376' => 'fan', 'FAN20G0354' => 'fan', 'FAN20G2429' => 'fan', 'FAN20G2658' => 'fan', 'FAN24G2343' => 'fan', 'FAN27G2362' => 'fan', 'FAN28G1765' => 'fan', 'FvH4_1g16020' => 'fve', 'FvH4_2g04890' => 'fve', 'FvH4_2g22270' => 'fve', 'FvH4_4g02630' => 'fve', 'FvH4_4g02640' => 'fve', 'FvH4_6g02650' => 'fve', 'Glyma.02G140600' => 'gma', 'Glyma.03G159900' => 'gma', 'Glyma.05G234800' => 'gma', 'Glyma.07G269600' => 'gma', 'Glyma.08G042300' => 'gma', 'Glyma.10G033500' => 'gma', 'Glyma.10G185200' => 'gma', 'Glyma.17G004300' => 'gma', 'Glyma.19G161900' => 'gma', 'Glyma.20G205100' => 'gma', 'Glyma.20G205200' => 'gma', 'Gohir.A01G139101' => 'ghi', 'Gohir.A02G035600' => 'ghi', 'Gohir.A02G117901' => 'ghi', 'Gohir.A07G210100' => 'ghi', 'Gohir.A07G210200' => 'ghi', 'Gohir.A08G061100' => 'ghi', 'Gohir.A09G223000' => 'ghi', 'Gohir.A09G223100' => 'ghi', 'Gohir.A10G113900' => 'ghi', 'Gohir.A10G114000' => 'ghi', 'Gohir.D02G042300' => 'ghi', 'Gohir.D07G216100' => 'ghi', 'Gohir.D07G216200' => 'ghi', 'Gohir.D08G070400' => 'ghi', 'Gohir.D09G225000' => 'ghi', 'Gohir.D09G225100' => 'ghi', 'Gohir.D10G152300' => 'ghi', 'Gohir.D10G153200' => 'ghi', 'Gohir.D11G133701' => 'ghi', 'Gorai.004G074100' => 'gra', 'Gorai.005G046800' => 'gra', 'Gorai.006G246500' => 'gra', 'Gorai.006G246600' => 'gra', 'Gorai.007G142900' => 'gra', 'Gorai.011G171000' => 'gra', 'Gorai.011G171100' => 'gra', 'Gorai.013G104300' => 'gra', 'Gorai.013G104400' => 'gra', 'GSVIVG01000754001' => 'vvi', 'GSVIVG01000756001' => 'vvi', 'GSVIVG01010903001' => 'vvi', 'GSVIVG01017623001' => 'vvi', 'GSVIVG01018113001' => 'vvi', 'GSVIVG01018116001' => 'vvi', 'GSVIVG01018118001' => 'vvi', 'HanXRQChr03g0076211' => 'han', 'HanXRQChr03g0092431' => 'han', 'HanXRQChr03g0092441' => 'han', 'HanXRQChr03g0092591' => 'han', 'HanXRQChr03g0092671' => 'han', 'HanXRQChr03g0092681' => 'han', 'HanXRQChr03g0092691' => 'han', 'HanXRQChr03g0092701' => 'han', 'HanXRQChr03g0092721' => 'han', 'HanXRQChr03g0092731' => 'han', 'HanXRQChr04g0113681' => 'han', 'HanXRQChr10g0281371' => 'han', 'HanXRQChr11g0337141' => 'han', 'HanXRQChr13g0424521' => 'han', 'HanXRQChr13g0424531' => 'han', 'HanXRQChr13g0424541' => 'han', 'HanXRQChr16g0498221' => 'han', 'Haze_04377' => 'cav', 'Haze_11298' => 'cav', 'Haze_24547' => 'cav', 'Haze_24550' => 'cav', 'Haze_26587' => 'cav', 'Hma1.2p1_0650F.1_g195410' => 'hma', 'Hma1.2p1_0893F.1_g233470' => 'hma', 'HPP92_006508' => 'vpl', 'HPP92_024780' => 'vpl', 'Hund02688' => 'sun', 'Hund09380' => 'sun', 'Hund09381' => 'sun', 'Hund09832' => 'sun', 'Hund09833' => 'sun', 'Hund11351' => 'sun', 'Hund11513' => 'sun', 'Lalb_Chr06g0162591' => 'lal', 'Lalb_Chr06g0162601' => 'lal', 'Lalb_Chr06g0169321' => 'lal', 'Lalb_Chr09g0330951' => 'lal', 'Lalb_Chr16g0387631' => 'lal', 'Lalb_Chr21g0306241' => 'lal', 'Lalb_Chr25g0290051' => 'lal', 'Lalb_Chr25g0290061' => 'lal', 'Lalb_Chr25g0290071' => 'lal', 'Lj1g0003876' => 'lja', 'Lj1P1207T36' => 'lonja', 'Lj2C1156G12' => 'lonja', 'Lj3A793G39' => 'lonja', 'Lj3C580G2' => 'lonja', 'Lj3C780G2' => 'lonja', 'Lj3C780T4' => 'lonja', 'Lj3C793G9' => 'lonja', 'Lj4g0012960' => 'lja', 'Lj5g0021252' => 'lja', 'Lj5g0021484' => 'lja', 'Lj5g0024528' => 'lja', 'Lj6A399T12' => 'lonja', 'Lj6A656G65' => 'lonja', 'Lsat_1_v5_gn_3_125500' => 'lsa', 'Lsat_1_v5_gn_3_125540' => 'lsa', 'Lsat_1_v5_gn_5_72701' => 'lsa', 'Lsat_1_v5_gn_8_91560' => 'lsa', 'Lsat_1_v5_gn_9_9640' => 'lsa', 'Manes.01G200600' => 'mes', 'Manes.01G200700' => 'mes', 'Manes.03G168900' => 'mes', 'Manes.03G169000' => 'mes', 'Manes.05G085801' => 'mes', 'Manes.05G086200' => 'mes', 'Manes.15G036700' => 'mes', 'Manes.15G036900' => 'mes', 'Mapoly0004s0172' => 'mpo', 'Mapoly0023s0001' => 'mpo', 'Mapoly0142s0012' => 'mpo', 'MBI01_g32854_MAGBIO' => 'mbi', 'MBI11_g24427_MAGBIO' => 'mbi', 'MBI11_g47319_MAGBIO' => 'mbi', 'MCO01G433' => 'mco', 'MD00G1187800' => 'mdo', 'MD04G1226500' => 'mdo', 'MD05G1203900' => 'mdo', 'MD10G1191100' => 'mdo', 'MD12G1243500' => 'mdo', 'MD13G1207000' => 'mdo', 'MD13G1207100' => 'mdo', 'MD16G1208600' => 'mdo', 'Medtr1g050352' => 'mtr', 'Medtr1g070385' => 'mtr', 'Medtr1g070450' => 'mtr', 'Medtr1g075200' => 'mtr', 'Medtr1g075250' => 'mtr', 'Medtr1g075260' => 'mtr', 'Medtr1g475250' => 'mtr', 'Medtr4g075450' => 'mtr', 'Medtr7g096300' => 'mtr', 'Medtr8g105110' => 'mtr', 'MELO3C006470.2' => 'cme', 'MELO3C006471.2' => 'cme', 'MELO3C020772.2' => 'cme', 'MELO3C026780.2' => 'cme', 'MELO3C026781.2' => 'cme', 'Migut.D00390' => 'egut', 'Migut.G00435' => 'egut', 'Migut.G00436' => 'egut', 'Migut.G00718' => 'egut', 'MSTRG.21891' => 'ama', 'MSTRG.26910' => 'ama', 'MSTRG.4099' => 'ama', 'MSTRG.9925' => 'ama', 'Nitab4.5_0000165g0010' => 'nta', 'Nitab4.5_0000209g0180' => 'nta', 'Nitab4.5_0000244g0440' => 'nta', 'Nitab4.5_0000525g0220' => 'nta', 'Nitab4.5_0001597g0020' => 'nta', 'Nitab4.5_0001878g0040' => 'nta', 'Nitab4.5_0001878g0060' => 'nta', 'Nitab4.5_0002838g0100' => 'nta', 'Nitab4.5_0002838g0120' => 'nta', 'Nitab4.5_0004798g0030' => 'nta', 'Nitab4.5_0005420g0010' => 'nta', 'Nitab4.5_0005507g0010' => 'nta', 'Nitab4.5_0005574g0020' => 'nta', 'Nitab4.5_0005838g0010' => 'nta', 'Nitab4.5_0010580g0020' => 'nta', 'Nn1g02599' => 'nnu', 'Nn1g02608' => 'nnu', 'Nn3g17742' => 'nnu', 'Nn3g19534' => 'nnu', 'Nn3g19535' => 'nnu', 'Oeu008790.1' => 'oeu', 'Oeu008792.1' => 'oeu', 'Oeu032590.1' => 'oeu', 'Oeu035349.1' => 'oeu', 'Oeu049791.1' => 'oeu', 'Os01g0774500' => 'osa', 'Os03g0628800' => 'osa', 'Os03g0798600' => 'osa', 'Os05g0508800' => 'osa', 'Peaxi162Scf00036g02018' => 'pax', 'Peaxi162Scf00578g00032' => 'pax', 'Peaxi162Scf00578g00317' => 'pax', 'Peaxi162Scf00785g00114' => 'pax', 'Peaxi162Scf00813g00119' => 'pax', 'Peaxi162Scf00906g00227' => 'pax', 'PGR004G0875' => 'pgr', 'PGR004G2424' => 'pgr', 'PGR031G1239' => 'pgr', 'PGR031G2474' => 'pgr', 'PGR044G0423' => 'pgr', 'PGSC0003DMG400001128' => 'stu', 'PGSC0003DMG400007336' => 'stu', 'PGSC0003DMG400016318' => 'stu', 'PGSC0003DMG400016319' => 'stu', 'PGSC0003DMG400018074' => 'stu', 'Phvul.001G157700' => 'pvu', 'Phvul.002G148550' => 'pvu', 'Phvul.002G320200' => 'pvu', 'Phvul.003G089200' => 'pvu', 'Phvul.007G126000' => 'pvu', 'Phvul.007G126100' => 'pvu', 'Phvul.007G178000' => 'pvu', 'Phvul.007G178200' => 'pvu', 'Potri.002G043000' => 'ptr', 'Potri.002G043200' => 'ptr', 'Potri.003G123750' => 'ptr', 'Potri.005G055401' => 'ptr', 'Potri.005G219700' => 'ptr', 'Potri.005G220000' => 'ptr', 'Potri.008G161901' => 'ptr', 'Potri.008G162000' => 'ptr', 'Potri.008G162400' => 'ptr', 'Potri.010G076900' => 'ptr', 'Pp3c12_9180' => 'ppa', 'Pp3c13_19770' => 'ppa', 'Pp3c14_22950' => 'ppa', 'Pp3c16_12160' => 'ppa', 'Pp3c27_7820' => 'ppa', 'Pp3c2_3490' => 'ppa', 'Pp3c3_23700' => 'ppa', 'Pp3c3_36520' => 'ppa', 'Pp3c4_15250' => 'ppa', 'PRCOL_00007002' => 'pco', 'Prupe.1G030600' => 'ppe', 'Prupe.1G030700' => 'ppe', 'Prupe.6G345200' => 'ppe', 'Prupe.8G230300' => 'ppe', 'Prupe.8G230500' => 'ppe', 'Psat3g059600' => 'psa', 'Psat5g200920' => 'psa', 'Psat6g056440' => 'psa', 'Psat6g057360' => 'psa', 'Psat6g134120' => 'psa', 'Psat6g134160' => 'psa', 'Psat7g008640' => 'psa', 'Psat7g185240' => 'psa', 'PSO017G1330' => 'pso', 'PSO063G6097' => 'pso', 'PSO170G0835' => 'pso', 'PSO170G2499' => 'pso', 'PSO210G5058' => 'pso', 'PSO210G6154' => 'pso', 'PSO585G0031' => 'pso', 'PSO832G0264' => 'pso', 'PSO832G4288' => 'pso', 'QL03p027355' => 'qlo', 'QL03p027430' => 'qlo', 'QL04p081380' => 'qlo', 'QL06p015642' => 'qlo', 'QL06p015650' => 'qlo', 'QL06p015686' => 'qlo', 'QL12p042927' => 'qlo', 'QL93p1863_0035' => 'qlo', 'RcHm_v2.0_Chr3g0450581' => 'rch', 'RcHm_v2.0_Chr4g0390371' => 'rch', 'RcHm_v2.0_Chr4g0390381' => 'rch', 'RcHm_v2.0_Chr4g0390491' => 'rch', 'RcHm_v2.0_Chr4g0390501' => 'rch', 'RcHm_v2.0_Chr6g0289231' => 'rch', 'Rhsim04G0190400' => 'rsi', 'Rhsim04G0190500' => 'rsi', 'Rhsim04G0190600' => 'rsi', 'Rhsim13G0031400' => 'rsi', 'Rhsim13G0165600' => 'rsi', 'RhsimUnG0114600' => 'rsi', 'RhsimUnG0114700' => 'rsi', 'Sabra02G0034800' => 'sbr', 'Sabra02G0035100' => 'sbr', 'Sabra05G0168600' => 'sbr', 'Sabra05G0168800' => 'sbr', 'Sabra08G0123700' => 'sbr', 'Sabra10G0031900' => 'sbr', 'Sabra13G0039000' => 'sbr', 'SalBow2G0782' => 'sbo', 'SalBow2G1403' => 'sbo', 'SalBow4G0074' => 'sbo', 'SalBow4G2635' => 'sbo', 'SalBow5G3010' => 'sbo', 'Sc05g0000870' => 'sci', 'Sc05g0000890' => 'sci', 'Sc13g0005000' => 'sci', 'Sc13g0005030' => 'sci', 'Sc19g0003790' => 'sci', 'Sc19g0003800' => 'sci', 'Sed0003467' => 'sed', 'Sed0009355' => 'sed', 'Sed0009894' => 'sed', 'Sed0011972' => 'sed', 'Sed0021483' => 'sed', 'Sed0021750' => 'sed', 'Sed0026279' => 'sed', 'SEGI_05312' => 'sgi', 'SEGI_10112' => 'sgi', 'SEGI_15835' => 'sgi', 'SEGI_30386' => 'sgi', 'SEGI_34122' => 'sgi', 'SEGI_35063' => 'sgi', 'SGA_v2.0_scaffold101G29794' => 'sas', 'SGA_v2.0_scaffold1G00573' => 'sas', 'SGA_v2.0_scaffold79G25637' => 'sas', 'SGA_v2.0_scaffold88G27283' => 'sas', 'SGA_v2.0_scaffold88G27285' => 'sas', 'SGA_v2.0_scaffold88G27331' => 'sas', 'SHI09937' => 'shi', 'SMO119G0302' => 'smo', 'SMO137G0231' => 'smo', 'SMO367G1151' => 'smo', 'Solyc02g082000.3' => 'sly', 'Solyc06g031670.3' => 'sly', 'Solyc06g053810.3' => 'sly', 'Solyc07g025457.1' => 'sly', 'Solyc08g059740.1' => 'sly', 'Solyc08g059750.3' => 'sly', 'Solyc09g083370.3' => 'sly', 'Solyc12g038950.3' => 'sly', 'Sopen02g026630' => 'spe', 'Sopen06g018930' => 'spe', 'Sopen06g018940' => 'spe', 'Sopen08g009460' => 'spe', 'Sopen09g032290' => 'spe', 'Sp1g03080' => 'spa', 'Sp1g03090' => 'spa', 'Sp1g05480' => 'spa', 'Sp2g07860' => 'spa', 'Sp2g08430' => 'spa', 'Sp2g08440' => 'spa', 'Sp2g26200' => 'spa', 'Sp4g13170' => 'spa', 'Sp6g33840' => 'spa', 'SpUn1204_0010' => 'spa', 'TAR365G0908' => 'tar', 'TAR381G1270' => 'tar', 'TAR381G1651' => 'tar', 'TAR625G1131' => 'tar', 'TAR633G0962' => 'tar', 'TAR633G1729' => 'tar', 'TAR633G1864' => 'tar', 'TAR636G0221' => 'tar', 'TAR636G0314' => 'tar', 'TAR636G3202' => 'tar', 'THA.LOC104800805' => 'tha', 'THA.LOC104801096' => 'tha', 'THA.LOC104801555' => 'tha', 'THA.LOC104808491' => 'tha', 'THA.LOC104808595' => 'tha', 'THA.LOC104815985' => 'tha', 'THA.LOC104822250' => 'tha', 'THA.LOC104826071' => 'tha', 'Thecc.01G265200' => 'tca', 'Thecc.01G265300' => 'tca', 'Thecc.01G265700' => 'tca', 'Thecc.03G109100' => 'tca', 'Thecc.04G245900' => 'tca', 'Thecc.04G246000' => 'tca', 'Thhalv10003334m.g' => 'esa', 'Thhalv10005508m.g' => 'esa', 'Thhalv10005643m.g' => 'esa', 'Thhalv10007316m.g' => 'esa', 'Thhalv10009006m.g' => 'esa', 'Thhalv10009309m.g' => 'esa', 'Thhalv10014917m.g' => 'esa', 'Thhalv10014919m.g' => 'esa', 'Thhalv10015393m.g' => 'esa', 'Thhalv10016515m.g' => 'esa', 'Thhalv10029242m.g' => 'esa', 'TPR.G16654' => 'tpr', 'TPR.G20589' => 'tpr', 'TPR.G23029' => 'tpr', 'TPR.G27731' => 'tpr', 'TPR.G28889' => 'tpr', 'TPR.G28899' => 'tpr', 'TPR.G30846' => 'tpr', 'TPR.G5452' => 'tpr', 'TPR.G5713' => 'tpr', 'TPR.G9046' => 'tpr', 'TPR.G9061' => 'tpr', 'TWI09G1075' => 'twi', 'TWI12G0806' => 'twi', 'TWI18G0108' => 'twi', 'TWI53G1361' => 'twi', 'TWI73G0185' => 'twi', 'TWI73G0427' => 'twi', 'unitig_37.g12001' => 'ugi', 'unitig_747.g21660' => 'ugi', 'unitig_748.g7232' => 'ugi', 'unitig_748.g7315' => 'ugi', 'unitig_85.g27262' => 'ugi', 'unitig_92.g28220' => 'ugi', 'vmacro02632' => 'vma', 'vmacro08410' => 'vma', 'vmacro08411' => 'vma', 'vmacro15407' => 'vma', 'VMungo0251G3619' => 'vmu', 'VMungo0720G1204' => 'vmu', 'VMungo0720G1918' => 'vmu', 'VMungo0720G2387' => 'vmu', 'VMungo0720G2961' => 'vmu', 'VMungo1215G2154' => 'vmu', 'VMungo1383G2411' => 'vmu', 'Zm00001eb051130' => 'zma', 'Zm00001eb116830' => 'zma', 'Zm00001eb116850' => 'zma', 'Zm00001eb151740' => 'zma', 'Zm00001eb292360' => 'zma', 'Zm00001eb301640' => 'zma' ), 'gf_id' => 'HOM05D000856', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000856' ), 'data_identifier' => 'HOM05D000856', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000856', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p00010' => 'bna', 'A03p04160' => 'bna', 'A03p17160' => 'bna', 'A04p23370' => 'bna', 'A05p14860' => 'bna', 'A08p37020' => 'bna', 'A09p08050' => 'bna', 'A09p66800' => 'bna', 'A09p67940' => 'bna', 'A10p02680' => 'bna', 'A10p05320' => 'bna', 'Aa31LG1G20560' => 'aar', 'Aa31LG1G20610' => 'aar', 'Aa31LG1G7810' => 'aar', 'Aa31LG5G3590' => 'aar', 'Aa31LG5G6140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3819' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4683' => 'aag', 'Actinidia04480' => 'ach', 'Actinidia05466' => 'ach', 'Actinidia08445' => 'ach', 'Actinidia21170' => 'ach', 'Actinidia24812' => 'ach', 'Actinidia24951' => 'ach', 'Actinidia40088' => 'ach', 'Ah.02g111660' => 'amhyb', 'Ah.11g048900' => 'amhyb', 'Ah.11g049910' => 'amhyb', 'AL1G13870' => 'aly', 'AL1G13880' => 'aly', 'AL1G16760' => 'aly', 'AL390U10020' => 'aly', 'AL4G25520' => 'aly', 'AL6G19890' => 'aly', 'AL6G19900' => 'aly', 'AL6G19910' => 'aly', 'AL8G40100' => 'aly', 'Aqoxy2G03562' => 'aox', 'Aqoxy5G00316' => 'aox', 'Aqoxy5G00926' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1628KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1H403S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2FU6SJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.882I6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8YRY2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YN1SN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AF70II' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZA8L1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F916KL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHRD8H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KTZ8QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S22EMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8M29T' => 'arhy', 'AT1G04270' => 'ath', 'AT1G04280' => 'ath', 'AT1G06750' => 'ath', 'AT1G33850' => 'ath', 'AT2G30630' => 'ath', 'AT5G09490' => 'ath', 'AT5G09500' => 'ath', 'AT5G09510' => 'ath', 'AT5G43640' => 'ath', 'AT5G63070' => 'ath', 'ATR0605G315' => 'atr', 'Atru.chr11.175' => 'acertr', 'Atru.chr11.653' => 'acertr', 'Atru.chr3.1616' => 'acertr', 'Atru.chr4.2230' => 'acertr', 'Atru.chr4.2232' => 'acertr', 'Atru.chr5.1598' => 'acertr', 'Atru.chr5.1600' => 'acertr', 'Atru.chr5.2188' => 'acertr', 'AUR62008326' => 'cqu', 'AUR62011922' => 'cqu', 'AUR62011924' => 'cqu', 'AUR62021771' => 'cqu', 'AUR62032237' => 'cqu', 'AUR62032240' => 'cqu', 'BcaB01g05572' => 'bca', 'BcaB02g10337' => 'bca', 'BcaB04g19944' => 'bca', 'BcaB05g21548' => 'bca', 'BcaB05g21549' => 'bca', 'BcaB05g23227' => 'bca', 'BcaB06g26256' => 'bca', 'BcaB06g26257' => 'bca', 'BcaB06g28379' => 'bca', 'BcaC02g11159' => 'bca', 'BcaC03g13258' => 'bca', 'BcaC03g13259' => 'bca', 'BcaC05g24456' => 'bca', 'BcaC05g24457' => 'bca', 'BcaC07g36922' => 'bca', 'BcaC07g36923' => 'bca', 'BcaC07g42050' => 'bca', 'BcaC07g42176' => 'bca', 'BcaC07g42195' => 'bca', 'BcaC07g42196' => 'bca', 'BcaNung06674' => 'bca', 'BolC2t06351H' => 'bol', 'BolC2t06352H' => 'bol', 'BolC3t12993H' => 'bol', 'BolC4t23525H' => 'bol', 'BolC4t27475H' => 'bol', 'BolC5t29025H' => 'bol', 'BolC5t29026H' => 'bol', 'BolC8t46898H' => 'bol', 'BolC8t46899H' => 'bol', 'BolC8t52630H' => 'bol', 'BolC8t52765H' => 'bol', 'BolC9t53824H' => 'bol', 'BraA03t09760Z' => 'bra', 'BraA03t10990Z' => 'bra', 'BraA05t20413Z' => 'bra', 'BraA08t35602Z' => 'bra', 'BraA09t36458Z' => 'bra', 'BraA09t42018Z' => 'bra', 'BraA09t42129Z' => 'bra', 'BraA10t42536Z' => 'bra', 'BraA10t42537Z' => 'bra', 'C01p10690' => 'bna', 'C02p03890' => 'bna', 'C02p03900' => 'bna', 'C03p04620' => 'bna', 'C04p19870' => 'bna', 'C04p59670' => 'bna', 'C05p02460' => 'bna', 'C05p02470' => 'bna', 'C08p00980' => 'bna', 'C08p00990' => 'bna', 'C08p51030' => 'bna', 'C08p52360' => 'bna', 'C09p09120' => 'bna', 'CAN.G19.15' => 'can', 'CAN.G251.10' => 'can', 'CAN.G251.9' => 'can', 'CAN.G398.24' => 'can', 'CAN.G410.32' => 'can', 'CAN.G881.2' => 'can', 'CANSAT01G3025' => 'cansat', 'CANSAT78G1211' => 'cansat', 'CANSAT78G1218' => 'cansat', 'CANSAT78G1521' => 'cansat', 'CANSAT78G1670' => 'cansat', 'CARHR003600' => 'chi', 'CARHR003610' => 'chi', 'CARHR006290' => 'chi', 'CARHR006430' => 'chi', 'CARHR124110' => 'chi', 'CARHR203870' => 'chi', 'CARHR203880' => 'chi', 'CARHR203890' => 'chi', 'CARHR276880' => 'chi', 'Carub.0001s0346' => 'cru', 'Carub.0001s0347' => 'cru', 'Carub.0001s0607' => 'cru', 'Carub.0003s2768' => 'cru', 'Carub.0003s2769' => 'cru', 'Carub.0004s1178' => 'cru', 'Carub.0006s0806' => 'cru', 'Carub.0006s0807' => 'cru', 'Carub.0006s0808' => 'cru', 'Carub.0008s0501' => 'cru', 'Carub.0008s2379' => 'cru', 'Ca_08655_v3' => 'car', 'Ca_08922_v3' => 'car', 'Ca_08923_v3' => 'car', 'Ca_09119_v3' => 'car', 'Ca_09703_v3' => 'car', 'Ca_09705_v3' => 'car', 'Ca_09835_v3' => 'car', 'Ca_26403_v3' => 'car', 'Ca_30719_v3' => 'car', 'CBR_g17958' => 'cbr', 'CBR_g40516' => 'cbr', 'Cc00_g05350' => 'ccan', 'Cc01_g18690' => 'ccan', 'Cc03_g04830' => 'ccan', 'Cc03_g04850' => 'ccan', 'CDE02G4469' => 'cde', 'CDE06G0883' => 'cde', 'CDE06G1295' => 'cde', 'CDE06G1390' => 'cde', 'CDE07G0584' => 'cde', 'CDE07G1084' => 'cde', 'CDE08G1259' => 'cde', 'Cfa002341' => 'cfa', 'Cfa024337' => 'cfa', 'Ciclev10004749m.g' => 'ccl', 'Ciclev10006127m.g' => 'ccl', 'Ciclev10019720m.g' => 'ccl', 'Ciclev10022652m.g' => 'ccl', 'CiPaw.01G190400' => 'cil', 'CiPaw.01G190500' => 'cil', 'CiPaw.02G116400' => 'cil', 'CiPaw.02G116500' => 'cil', 'CiPaw.04G183000' => 'cil', 'CiPaw.04G183300' => 'cil', 'ClCG05G004610' => 'cla', 'ClCG05G004620' => 'cla', 'ClCG06G006730' => 'cla', 'ClCG06G006740' => 'cla', 'ClCG11G003690' => 'cla', 'COL.COLO4_08276' => 'col', 'COL.COLO4_08277' => 'col', 'COL.COLO4_15787' => 'col', 'COL.COLO4_15789' => 'col', 'Cpa.g.c44815' => 'cpa', 'Cpa.g.sc52.144' => 'cpa', 'Cpa.g.sc58.46' => 'cpa', 'Cpa.g.sc58.47' => 'cpa', 'Cre08.g360900' => 'cre', 'CsaV3_2G013030' => 'csa', 'CsaV3_2G013050' => 'csa', 'CsaV3_2G015620' => 'csa', 'CsaV3_3G012590' => 'csa', 'CsaV3_3G012600' => 'csa', 'CSS0001641' => 'camsi', 'CSS0008310' => 'camsi', 'CSS0013011' => 'camsi', 'CSS0017147' => 'camsi', 'CSS0022970' => 'camsi', 'CSS0025655' => 'camsi', 'CSS0028665' => 'camsi', 'CSS0029117' => 'camsi', 'CSS0032024' => 'camsi', 'CSS0039681' => 'camsi', 'CSS0046516' => 'camsi', 'CSS0050307' => 'camsi', 'DCAR_005871' => 'dca', 'DCAR_007342' => 'dca', 'DCAR_024228' => 'dca', 'DCAR_027277' => 'dca', 'DCAR_030718' => 'dca', 'Dinv20287' => 'din', 'Dinv22461' => 'din', 'Dinv22464' => 'din', 'Dinv29912' => 'din', 'Dinv29913' => 'din', 'Dinv34580' => 'din', 'Dinv34582' => 'din', 'Dinv44632' => 'din', 'Duzib052G0266' => 'dzi', 'Duzib133G0907' => 'dzi', 'Duzib133G1034' => 'dzi', 'Duzib138G0207' => 'dzi', 'Duzib138G0491' => 'dzi', 'Duzib151G0812' => 'dzi', 'Duzib151G1166' => 'dzi', 'Duzib168G0192' => 'dzi', 'Duzib211G0077' => 'dzi', 'Duzib212G0429' => 'dzi', 'Duzib212G0472' => 'dzi', 'ECA233G2617' => 'eca', 'ECA236G4188' => 'eca', 'ECA240G0936' => 'eca', 'ECA240G1129' => 'eca', 'ECA247G0623' => 'eca', 'EL10Ac5g10451' => 'bvu', 'EL10Ac5g10453' => 'bvu', 'EL10Ac5g10894' => 'bvu', 'Eucgr.H00192' => 'egr', 'Eucgr.H00193' => 'egr', 'Eucgr.H00194' => 'egr', 'Eucgr.J01562' => 'egr', 'Eucgr.K03301' => 'egr', 'FAN02G0632' => 'fan', 'FAN05G5378' => 'fan', 'FAN09G3247' => 'fan', 'FAN12G0435' => 'fan', 'FAN12G2426' => 'fan', 'FAN14G1707' => 'fan', 'FAN14G4725' => 'fan', 'FAN15G2071' => 'fan', 'FAN17G3065' => 'fan', 'FAN19G1376' => 'fan', 'FAN20G0354' => 'fan', 'FAN20G2429' => 'fan', 'FAN20G2658' => 'fan', 'FAN24G2343' => 'fan', 'FAN27G2362' => 'fan', 'FAN28G1765' => 'fan', 'FvH4_1g16020' => 'fve', 'FvH4_2g04890' => 'fve', 'FvH4_2g22270' => 'fve', 'FvH4_4g02630' => 'fve', 'FvH4_4g02640' => 'fve', 'FvH4_6g02650' => 'fve', 'Glyma.02G140600' => 'gma', 'Glyma.03G159900' => 'gma', 'Glyma.05G234800' => 'gma', 'Glyma.07G269600' => 'gma', 'Glyma.08G042300' => 'gma', 'Glyma.10G033500' => 'gma', 'Glyma.10G185200' => 'gma', 'Glyma.17G004300' => 'gma', 'Glyma.19G161900' => 'gma', 'Glyma.20G205100' => 'gma', 'Glyma.20G205200' => 'gma', 'Gohir.A01G139101' => 'ghi', 'Gohir.A02G035600' => 'ghi', 'Gohir.A02G117901' => 'ghi', 'Gohir.A07G210100' => 'ghi', 'Gohir.A07G210200' => 'ghi', 'Gohir.A08G061100' => 'ghi', 'Gohir.A09G223000' => 'ghi', 'Gohir.A09G223100' => 'ghi', 'Gohir.A10G113900' => 'ghi', 'Gohir.A10G114000' => 'ghi', 'Gohir.D02G042300' => 'ghi', 'Gohir.D07G216100' => 'ghi', 'Gohir.D07G216200' => 'ghi', 'Gohir.D08G070400' => 'ghi', 'Gohir.D09G225000' => 'ghi', 'Gohir.D09G225100' => 'ghi', 'Gohir.D10G152300' => 'ghi', 'Gohir.D10G153200' => 'ghi', 'Gohir.D11G133701' => 'ghi', 'Gorai.004G074100' => 'gra', 'Gorai.005G046800' => 'gra', 'Gorai.006G246500' => 'gra', 'Gorai.006G246600' => 'gra', 'Gorai.007G142900' => 'gra', 'Gorai.011G171000' => 'gra', 'Gorai.011G171100' => 'gra', 'Gorai.013G104300' => 'gra', 'Gorai.013G104400' => 'gra', 'GSVIVG01000754001' => 'vvi', 'GSVIVG01000756001' => 'vvi', 'GSVIVG01010903001' => 'vvi', 'GSVIVG01017623001' => 'vvi', 'GSVIVG01018113001' => 'vvi', 'GSVIVG01018116001' => 'vvi', 'GSVIVG01018118001' => 'vvi', 'HanXRQChr03g0076211' => 'han', 'HanXRQChr03g0092431' => 'han', 'HanXRQChr03g0092441' => 'han', 'HanXRQChr03g0092591' => 'han', 'HanXRQChr03g0092671' => 'han', 'HanXRQChr03g0092681' => 'han', 'HanXRQChr03g0092691' => 'han', 'HanXRQChr03g0092701' => 'han', 'HanXRQChr03g0092721' => 'han', 'HanXRQChr03g0092731' => 'han', 'HanXRQChr04g0113681' => 'han', 'HanXRQChr10g0281371' => 'han', 'HanXRQChr11g0337141' => 'han', 'HanXRQChr13g0424521' => 'han', 'HanXRQChr13g0424531' => 'han', 'HanXRQChr13g0424541' => 'han', 'HanXRQChr16g0498221' => 'han', 'Haze_04377' => 'cav', 'Haze_11298' => 'cav', 'Haze_24547' => 'cav', 'Haze_24550' => 'cav', 'Haze_26587' => 'cav', 'Hma1.2p1_0650F.1_g195410' => 'hma', 'Hma1.2p1_0893F.1_g233470' => 'hma', 'HPP92_006508' => 'vpl', 'HPP92_024780' => 'vpl', 'Hund02688' => 'sun', 'Hund09380' => 'sun', 'Hund09381' => 'sun', 'Hund09832' => 'sun', 'Hund09833' => 'sun', 'Hund11351' => 'sun', 'Hund11513' => 'sun', 'Lalb_Chr06g0162591' => 'lal', 'Lalb_Chr06g0162601' => 'lal', 'Lalb_Chr06g0169321' => 'lal', 'Lalb_Chr09g0330951' => 'lal', 'Lalb_Chr16g0387631' => 'lal', 'Lalb_Chr21g0306241' => 'lal', 'Lalb_Chr25g0290051' => 'lal', 'Lalb_Chr25g0290061' => 'lal', 'Lalb_Chr25g0290071' => 'lal', 'Lj1g0003876' => 'lja', 'Lj1P1207T36' => 'lonja', 'Lj2C1156G12' => 'lonja', 'Lj3A793G39' => 'lonja', 'Lj3C580G2' => 'lonja', 'Lj3C780G2' => 'lonja', 'Lj3C780T4' => 'lonja', 'Lj3C793G9' => 'lonja', 'Lj4g0012960' => 'lja', 'Lj5g0021252' => 'lja', 'Lj5g0021484' => 'lja', 'Lj5g0024528' => 'lja', 'Lj6A399T12' => 'lonja', 'Lj6A656G65' => 'lonja', 'Lsat_1_v5_gn_3_125500' => 'lsa', 'Lsat_1_v5_gn_3_125540' => 'lsa', 'Lsat_1_v5_gn_5_72701' => 'lsa', 'Lsat_1_v5_gn_8_91560' => 'lsa', 'Lsat_1_v5_gn_9_9640' => 'lsa', 'Manes.01G200600' => 'mes', 'Manes.01G200700' => 'mes', 'Manes.03G168900' => 'mes', 'Manes.03G169000' => 'mes', 'Manes.05G085801' => 'mes', 'Manes.05G086200' => 'mes', 'Manes.15G036700' => 'mes', 'Manes.15G036900' => 'mes', 'Mapoly0004s0172' => 'mpo', 'Mapoly0023s0001' => 'mpo', 'Mapoly0142s0012' => 'mpo', 'MBI01_g32854_MAGBIO' => 'mbi', 'MBI11_g24427_MAGBIO' => 'mbi', 'MBI11_g47319_MAGBIO' => 'mbi', 'MCO01G433' => 'mco', 'MD00G1187800' => 'mdo', 'MD04G1226500' => 'mdo', 'MD05G1203900' => 'mdo', 'MD10G1191100' => 'mdo', 'MD12G1243500' => 'mdo', 'MD13G1207000' => 'mdo', 'MD13G1207100' => 'mdo', 'MD16G1208600' => 'mdo', 'Medtr1g050352' => 'mtr', 'Medtr1g070385' => 'mtr', 'Medtr1g070450' => 'mtr', 'Medtr1g075200' => 'mtr', 'Medtr1g075250' => 'mtr', 'Medtr1g075260' => 'mtr', 'Medtr1g475250' => 'mtr', 'Medtr4g075450' => 'mtr', 'Medtr7g096300' => 'mtr', 'Medtr8g105110' => 'mtr', 'MELO3C006470.2' => 'cme', 'MELO3C006471.2' => 'cme', 'MELO3C020772.2' => 'cme', 'MELO3C026780.2' => 'cme', 'MELO3C026781.2' => 'cme', 'Migut.D00390' => 'egut', 'Migut.G00435' => 'egut', 'Migut.G00436' => 'egut', 'Migut.G00718' => 'egut', 'MSTRG.21891' => 'ama', 'MSTRG.26910' => 'ama', 'MSTRG.4099' => 'ama', 'MSTRG.9925' => 'ama', 'Nitab4.5_0000165g0010' => 'nta', 'Nitab4.5_0000209g0180' => 'nta', 'Nitab4.5_0000244g0440' => 'nta', 'Nitab4.5_0000525g0220' => 'nta', 'Nitab4.5_0001597g0020' => 'nta', 'Nitab4.5_0001878g0040' => 'nta', 'Nitab4.5_0001878g0060' => 'nta', 'Nitab4.5_0002838g0100' => 'nta', 'Nitab4.5_0002838g0120' => 'nta', 'Nitab4.5_0004798g0030' => 'nta', 'Nitab4.5_0005420g0010' => 'nta', 'Nitab4.5_0005507g0010' => 'nta', 'Nitab4.5_0005574g0020' => 'nta', 'Nitab4.5_0005838g0010' => 'nta', 'Nitab4.5_0010580g0020' => 'nta', 'Nn1g02599' => 'nnu', 'Nn1g02608' => 'nnu', 'Nn3g17742' => 'nnu', 'Nn3g19534' => 'nnu', 'Nn3g19535' => 'nnu', 'Oeu008790.1' => 'oeu', 'Oeu008792.1' => 'oeu', 'Oeu032590.1' => 'oeu', 'Oeu035349.1' => 'oeu', 'Oeu049791.1' => 'oeu', 'Os01g0774500' => 'osa', 'Os03g0628800' => 'osa', 'Os03g0798600' => 'osa', 'Os05g0508800' => 'osa', 'Peaxi162Scf00036g02018' => 'pax', 'Peaxi162Scf00578g00032' => 'pax', 'Peaxi162Scf00578g00317' => 'pax', 'Peaxi162Scf00785g00114' => 'pax', 'Peaxi162Scf00813g00119' => 'pax', 'Peaxi162Scf00906g00227' => 'pax', 'PGR004G0875' => 'pgr', 'PGR004G2424' => 'pgr', 'PGR031G1239' => 'pgr', 'PGR031G2474' => 'pgr', 'PGR044G0423' => 'pgr', 'PGSC0003DMG400001128' => 'stu', 'PGSC0003DMG400007336' => 'stu', 'PGSC0003DMG400016318' => 'stu', 'PGSC0003DMG400016319' => 'stu', 'PGSC0003DMG400018074' => 'stu', 'Phvul.001G157700' => 'pvu', 'Phvul.002G148550' => 'pvu', 'Phvul.002G320200' => 'pvu', 'Phvul.003G089200' => 'pvu', 'Phvul.007G126000' => 'pvu', 'Phvul.007G126100' => 'pvu', 'Phvul.007G178000' => 'pvu', 'Phvul.007G178200' => 'pvu', 'Potri.002G043000' => 'ptr', 'Potri.002G043200' => 'ptr', 'Potri.003G123750' => 'ptr', 'Potri.005G055401' => 'ptr', 'Potri.005G219700' => 'ptr', 'Potri.005G220000' => 'ptr', 'Potri.008G161901' => 'ptr', 'Potri.008G162000' => 'ptr', 'Potri.008G162400' => 'ptr', 'Potri.010G076900' => 'ptr', 'Pp3c12_9180' => 'ppa', 'Pp3c13_19770' => 'ppa', 'Pp3c14_22950' => 'ppa', 'Pp3c16_12160' => 'ppa', 'Pp3c27_7820' => 'ppa', 'Pp3c2_3490' => 'ppa', 'Pp3c3_23700' => 'ppa', 'Pp3c3_36520' => 'ppa', 'Pp3c4_15250' => 'ppa', 'PRCOL_00007002' => 'pco', 'Prupe.1G030600' => 'ppe', 'Prupe.1G030700' => 'ppe', 'Prupe.6G345200' => 'ppe', 'Prupe.8G230300' => 'ppe', 'Prupe.8G230500' => 'ppe', 'Psat3g059600' => 'psa', 'Psat5g200920' => 'psa', 'Psat6g056440' => 'psa', 'Psat6g057360' => 'psa', 'Psat6g134120' => 'psa', 'Psat6g134160' => 'psa', 'Psat7g008640' => 'psa', 'Psat7g185240' => 'psa', 'PSO017G1330' => 'pso', 'PSO063G6097' => 'pso', 'PSO170G0835' => 'pso', 'PSO170G2499' => 'pso', 'PSO210G5058' => 'pso', 'PSO210G6154' => 'pso', 'PSO585G0031' => 'pso', 'PSO832G0264' => 'pso', 'PSO832G4288' => 'pso', 'QL03p027355' => 'qlo', 'QL03p027430' => 'qlo', 'QL04p081380' => 'qlo', 'QL06p015642' => 'qlo', 'QL06p015650' => 'qlo', 'QL06p015686' => 'qlo', 'QL12p042927' => 'qlo', 'QL93p1863_0035' => 'qlo', 'RcHm_v2.0_Chr3g0450581' => 'rch', 'RcHm_v2.0_Chr4g0390371' => 'rch', 'RcHm_v2.0_Chr4g0390381' => 'rch', 'RcHm_v2.0_Chr4g0390491' => 'rch', 'RcHm_v2.0_Chr4g0390501' => 'rch', 'RcHm_v2.0_Chr6g0289231' => 'rch', 'Rhsim04G0190400' => 'rsi', 'Rhsim04G0190500' => 'rsi', 'Rhsim04G0190600' => 'rsi', 'Rhsim13G0031400' => 'rsi', 'Rhsim13G0165600' => 'rsi', 'RhsimUnG0114600' => 'rsi', 'RhsimUnG0114700' => 'rsi', 'Sabra02G0034800' => 'sbr', 'Sabra02G0035100' => 'sbr', 'Sabra05G0168600' => 'sbr', 'Sabra05G0168800' => 'sbr', 'Sabra08G0123700' => 'sbr', 'Sabra10G0031900' => 'sbr', 'Sabra13G0039000' => 'sbr', 'SalBow2G0782' => 'sbo', 'SalBow2G1403' => 'sbo', 'SalBow4G0074' => 'sbo', 'SalBow4G2635' => 'sbo', 'SalBow5G3010' => 'sbo', 'Sc05g0000870' => 'sci', 'Sc05g0000890' => 'sci', 'Sc13g0005000' => 'sci', 'Sc13g0005030' => 'sci', 'Sc19g0003790' => 'sci', 'Sc19g0003800' => 'sci', 'Sed0003467' => 'sed', 'Sed0009355' => 'sed', 'Sed0009894' => 'sed', 'Sed0011972' => 'sed', 'Sed0021483' => 'sed', 'Sed0021750' => 'sed', 'Sed0026279' => 'sed', 'SEGI_05312' => 'sgi', 'SEGI_10112' => 'sgi', 'SEGI_15835' => 'sgi', 'SEGI_30386' => 'sgi', 'SEGI_34122' => 'sgi', 'SEGI_35063' => 'sgi', 'SGA_v2.0_scaffold101G29794' => 'sas', 'SGA_v2.0_scaffold1G00573' => 'sas', 'SGA_v2.0_scaffold79G25637' => 'sas', 'SGA_v2.0_scaffold88G27283' => 'sas', 'SGA_v2.0_scaffold88G27285' => 'sas', 'SGA_v2.0_scaffold88G27331' => 'sas', 'SHI09937' => 'shi', 'SMO119G0302' => 'smo', 'SMO137G0231' => 'smo', 'SMO367G1151' => 'smo', 'Solyc02g082000.3' => 'sly', 'Solyc06g031670.3' => 'sly', 'Solyc06g053810.3' => 'sly', 'Solyc07g025457.1' => 'sly', 'Solyc08g059740.1' => 'sly', 'Solyc08g059750.3' => 'sly', 'Solyc09g083370.3' => 'sly', 'Solyc12g038950.3' => 'sly', 'Sopen02g026630' => 'spe', 'Sopen06g018930' => 'spe', 'Sopen06g018940' => 'spe', 'Sopen08g009460' => 'spe', 'Sopen09g032290' => 'spe', 'Sp1g03080' => 'spa', 'Sp1g03090' => 'spa', 'Sp1g05480' => 'spa', 'Sp2g07860' => 'spa', 'Sp2g08430' => 'spa', 'Sp2g08440' => 'spa', 'Sp2g26200' => 'spa', 'Sp4g13170' => 'spa', 'Sp6g33840' => 'spa', 'SpUn1204_0010' => 'spa', 'TAR365G0908' => 'tar', 'TAR381G1270' => 'tar', 'TAR381G1651' => 'tar', 'TAR625G1131' => 'tar', 'TAR633G0962' => 'tar', 'TAR633G1729' => 'tar', 'TAR633G1864' => 'tar', 'TAR636G0221' => 'tar', 'TAR636G0314' => 'tar', 'TAR636G3202' => 'tar', 'THA.LOC104800805' => 'tha', 'THA.LOC104801096' => 'tha', 'THA.LOC104801555' => 'tha', 'THA.LOC104808491' => 'tha', 'THA.LOC104808595' => 'tha', 'THA.LOC104815985' => 'tha', 'THA.LOC104822250' => 'tha', 'THA.LOC104826071' => 'tha', 'Thecc.01G265200' => 'tca', 'Thecc.01G265300' => 'tca', 'Thecc.01G265700' => 'tca', 'Thecc.03G109100' => 'tca', 'Thecc.04G245900' => 'tca', 'Thecc.04G246000' => 'tca', 'Thhalv10003334m.g' => 'esa', 'Thhalv10005508m.g' => 'esa', 'Thhalv10005643m.g' => 'esa', 'Thhalv10007316m.g' => 'esa', 'Thhalv10009006m.g' => 'esa', 'Thhalv10009309m.g' => 'esa', 'Thhalv10014917m.g' => 'esa', 'Thhalv10014919m.g' => 'esa', 'Thhalv10015393m.g' => 'esa', 'Thhalv10016515m.g' => 'esa', 'Thhalv10029242m.g' => 'esa', 'TPR.G16654' => 'tpr', 'TPR.G20589' => 'tpr', 'TPR.G23029' => 'tpr', 'TPR.G27731' => 'tpr', 'TPR.G28889' => 'tpr', 'TPR.G28899' => 'tpr', 'TPR.G30846' => 'tpr', 'TPR.G5452' => 'tpr', 'TPR.G5713' => 'tpr', 'TPR.G9046' => 'tpr', 'TPR.G9061' => 'tpr', 'TWI09G1075' => 'twi', 'TWI12G0806' => 'twi', 'TWI18G0108' => 'twi', 'TWI53G1361' => 'twi', 'TWI73G0185' => 'twi', 'TWI73G0427' => 'twi', 'unitig_37.g12001' => 'ugi', 'unitig_747.g21660' => 'ugi', 'unitig_748.g7232' => 'ugi', 'unitig_748.g7315' => 'ugi', 'unitig_85.g27262' => 'ugi', 'unitig_92.g28220' => 'ugi', 'vmacro02632' => 'vma', 'vmacro08410' => 'vma', 'vmacro08411' => 'vma', 'vmacro15407' => 'vma', 'VMungo0251G3619' => 'vmu', 'VMungo0720G1204' => 'vmu', 'VMungo0720G1918' => 'vmu', 'VMungo0720G2387' => 'vmu', 'VMungo0720G2961' => 'vmu', 'VMungo1215G2154' => 'vmu', 'VMungo1383G2411' => 'vmu', 'Zm00001eb051130' => 'zma', 'Zm00001eb116830' => 'zma', 'Zm00001eb116850' => 'zma', 'Zm00001eb151740' => 'zma', 'Zm00001eb292360' => 'zma', 'Zm00001eb301640' => 'zma' ) $gf_id = 'HOM05D000856' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000856' ) $data_identifier = 'HOM05D000856' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 13, 'ath' => (int) 10, 'atr' => (int) 1, 'acertr' => (int) 8, 'cqu' => (int) 6, 'bca' => (int) 21, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 11, 'car' => (int) 9, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 8, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 5, 'fan' => (int) 16, 'fve' => (int) 6, 'gma' => (int) 11, 'ghi' => (int) 19, 'gra' => (int) 9, 'vvi' => (int) 7, 'han' => (int) 17, 'cav' => (int) 5, 'hma' => (int) 2, 'vpl' => (int) 2, 'sun' => (int) 7, 'lal' => (int) 9, 'lja' => (int) 5, 'lonja' => (int) 9, 'lsa' => (int) 5, 'mes' => (int) 8, 'mpo' => (int) 3, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 10, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 15, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 9, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 9, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 6, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 5, 'spa' => (int) 10, 'tar' => (int) 10, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 11, 'tpr' => (int) 11, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 4, 'vmu' => (int) 7, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb301640' $species_info = array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ) $local_species = 'lonja' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000856', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p00010' => 'bna', 'A03p04160' => 'bna', 'A03p17160' => 'bna', 'A04p23370' => 'bna', 'A05p14860' => 'bna', 'A08p37020' => 'bna', 'A09p08050' => 'bna', 'A09p66800' => 'bna', 'A09p67940' => 'bna', 'A10p02680' => 'bna', 'A10p05320' => 'bna', 'Aa31LG1G20560' => 'aar', 'Aa31LG1G20610' => 'aar', 'Aa31LG1G7810' => 'aar', 'Aa31LG5G3590' => 'aar', 'Aa31LG5G6140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3819' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4683' => 'aag', 'Actinidia04480' => 'ach', 'Actinidia05466' => 'ach', 'Actinidia08445' => 'ach', 'Actinidia21170' => 'ach', 'Actinidia24812' => 'ach', 'Actinidia24951' => 'ach', 'Actinidia40088' => 'ach', 'Ah.02g111660' => 'amhyb', 'Ah.11g048900' => 'amhyb', 'Ah.11g049910' => 'amhyb', 'AL1G13870' => 'aly', 'AL1G13880' => 'aly', 'AL1G16760' => 'aly', 'AL390U10020' => 'aly', 'AL4G25520' => 'aly', 'AL6G19890' => 'aly', 'AL6G19900' => 'aly', 'AL6G19910' => 'aly', 'AL8G40100' => 'aly', 'Aqoxy2G03562' => 'aox', 'Aqoxy5G00316' => 'aox', 'Aqoxy5G00926' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1628KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1H403S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2FU6SJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.882I6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8YRY2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YN1SN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AF70II' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZA8L1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F916KL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHRD8H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KTZ8QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S22EMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8M29T' => 'arhy', 'AT1G04270' => 'ath', 'AT1G04280' => 'ath', 'AT1G06750' => 'ath', 'AT1G33850' => 'ath', 'AT2G30630' => 'ath', 'AT5G09490' => 'ath', 'AT5G09500' => 'ath', 'AT5G09510' => 'ath', 'AT5G43640' => 'ath', 'AT5G63070' => 'ath', 'ATR0605G315' => 'atr', 'Atru.chr11.175' => 'acertr', 'Atru.chr11.653' => 'acertr', 'Atru.chr3.1616' => 'acertr', 'Atru.chr4.2230' => 'acertr', 'Atru.chr4.2232' => 'acertr', 'Atru.chr5.1598' => 'acertr', 'Atru.chr5.1600' => 'acertr', 'Atru.chr5.2188' => 'acertr', 'AUR62008326' => 'cqu', 'AUR62011922' => 'cqu', 'AUR62011924' => 'cqu', 'AUR62021771' => 'cqu', 'AUR62032237' => 'cqu', 'AUR62032240' => 'cqu', 'BcaB01g05572' => 'bca', 'BcaB02g10337' => 'bca', 'BcaB04g19944' => 'bca', 'BcaB05g21548' => 'bca', 'BcaB05g21549' => 'bca', 'BcaB05g23227' => 'bca', 'BcaB06g26256' => 'bca', 'BcaB06g26257' => 'bca', 'BcaB06g28379' => 'bca', 'BcaC02g11159' => 'bca', 'BcaC03g13258' => 'bca', 'BcaC03g13259' => 'bca', 'BcaC05g24456' => 'bca', 'BcaC05g24457' => 'bca', 'BcaC07g36922' => 'bca', 'BcaC07g36923' => 'bca', 'BcaC07g42050' => 'bca', 'BcaC07g42176' => 'bca', 'BcaC07g42195' => 'bca', 'BcaC07g42196' => 'bca', 'BcaNung06674' => 'bca', 'BolC2t06351H' => 'bol', 'BolC2t06352H' => 'bol', 'BolC3t12993H' => 'bol', 'BolC4t23525H' => 'bol', 'BolC4t27475H' => 'bol', 'BolC5t29025H' => 'bol', 'BolC5t29026H' => 'bol', 'BolC8t46898H' => 'bol', 'BolC8t46899H' => 'bol', 'BolC8t52630H' => 'bol', 'BolC8t52765H' => 'bol', 'BolC9t53824H' => 'bol', 'BraA03t09760Z' => 'bra', 'BraA03t10990Z' => 'bra', 'BraA05t20413Z' => 'bra', 'BraA08t35602Z' => 'bra', 'BraA09t36458Z' => 'bra', 'BraA09t42018Z' => 'bra', 'BraA09t42129Z' => 'bra', 'BraA10t42536Z' => 'bra', 'BraA10t42537Z' => 'bra', 'C01p10690' => 'bna', 'C02p03890' => 'bna', 'C02p03900' => 'bna', 'C03p04620' => 'bna', 'C04p19870' => 'bna', 'C04p59670' => 'bna', 'C05p02460' => 'bna', 'C05p02470' => 'bna', 'C08p00980' => 'bna', 'C08p00990' => 'bna', 'C08p51030' => 'bna', 'C08p52360' => 'bna', 'C09p09120' => 'bna', 'CAN.G19.15' => 'can', 'CAN.G251.10' => 'can', 'CAN.G251.9' => 'can', 'CAN.G398.24' => 'can', 'CAN.G410.32' => 'can', 'CAN.G881.2' => 'can', 'CANSAT01G3025' => 'cansat', 'CANSAT78G1211' => 'cansat', 'CANSAT78G1218' => 'cansat', 'CANSAT78G1521' => 'cansat', 'CANSAT78G1670' => 'cansat', 'CARHR003600' => 'chi', 'CARHR003610' => 'chi', 'CARHR006290' => 'chi', 'CARHR006430' => 'chi', 'CARHR124110' => 'chi', 'CARHR203870' => 'chi', 'CARHR203880' => 'chi', 'CARHR203890' => 'chi', 'CARHR276880' => 'chi', 'Carub.0001s0346' => 'cru', 'Carub.0001s0347' => 'cru', 'Carub.0001s0607' => 'cru', 'Carub.0003s2768' => 'cru', 'Carub.0003s2769' => 'cru', 'Carub.0004s1178' => 'cru', 'Carub.0006s0806' => 'cru', 'Carub.0006s0807' => 'cru', 'Carub.0006s0808' => 'cru', 'Carub.0008s0501' => 'cru', 'Carub.0008s2379' => 'cru', 'Ca_08655_v3' => 'car', 'Ca_08922_v3' => 'car', 'Ca_08923_v3' => 'car', 'Ca_09119_v3' => 'car', 'Ca_09703_v3' => 'car', 'Ca_09705_v3' => 'car', 'Ca_09835_v3' => 'car', 'Ca_26403_v3' => 'car', 'Ca_30719_v3' => 'car', 'CBR_g17958' => 'cbr', 'CBR_g40516' => 'cbr', 'Cc00_g05350' => 'ccan', 'Cc01_g18690' => 'ccan', 'Cc03_g04830' => 'ccan', 'Cc03_g04850' => 'ccan', 'CDE02G4469' => 'cde', 'CDE06G0883' => 'cde', 'CDE06G1295' => 'cde', 'CDE06G1390' => 'cde', 'CDE07G0584' => 'cde', 'CDE07G1084' => 'cde', 'CDE08G1259' => 'cde', 'Cfa002341' => 'cfa', 'Cfa024337' => 'cfa', 'Ciclev10004749m.g' => 'ccl', 'Ciclev10006127m.g' => 'ccl', 'Ciclev10019720m.g' => 'ccl', 'Ciclev10022652m.g' => 'ccl', 'CiPaw.01G190400' => 'cil', 'CiPaw.01G190500' => 'cil', 'CiPaw.02G116400' => 'cil', 'CiPaw.02G116500' => 'cil', 'CiPaw.04G183000' => 'cil', 'CiPaw.04G183300' => 'cil', 'ClCG05G004610' => 'cla', 'ClCG05G004620' => 'cla', 'ClCG06G006730' => 'cla', 'ClCG06G006740' => 'cla', 'ClCG11G003690' => 'cla', 'COL.COLO4_08276' => 'col', 'COL.COLO4_08277' => 'col', 'COL.COLO4_15787' => 'col', 'COL.COLO4_15789' => 'col', 'Cpa.g.c44815' => 'cpa', 'Cpa.g.sc52.144' => 'cpa', 'Cpa.g.sc58.46' => 'cpa', 'Cpa.g.sc58.47' => 'cpa', 'Cre08.g360900' => 'cre', 'CsaV3_2G013030' => 'csa', 'CsaV3_2G013050' => 'csa', 'CsaV3_2G015620' => 'csa', 'CsaV3_3G012590' => 'csa', 'CsaV3_3G012600' => 'csa', 'CSS0001641' => 'camsi', 'CSS0008310' => 'camsi', 'CSS0013011' => 'camsi', 'CSS0017147' => 'camsi', 'CSS0022970' => 'camsi', 'CSS0025655' => 'camsi', 'CSS0028665' => 'camsi', 'CSS0029117' => 'camsi', 'CSS0032024' => 'camsi', 'CSS0039681' => 'camsi', 'CSS0046516' => 'camsi', 'CSS0050307' => 'camsi', 'DCAR_005871' => 'dca', 'DCAR_007342' => 'dca', 'DCAR_024228' => 'dca', 'DCAR_027277' => 'dca', 'DCAR_030718' => 'dca', 'Dinv20287' => 'din', 'Dinv22461' => 'din', 'Dinv22464' => 'din', 'Dinv29912' => 'din', 'Dinv29913' => 'din', 'Dinv34580' => 'din', 'Dinv34582' => 'din', 'Dinv44632' => 'din', 'Duzib052G0266' => 'dzi', 'Duzib133G0907' => 'dzi', 'Duzib133G1034' => 'dzi', 'Duzib138G0207' => 'dzi', 'Duzib138G0491' => 'dzi', 'Duzib151G0812' => 'dzi', 'Duzib151G1166' => 'dzi', 'Duzib168G0192' => 'dzi', 'Duzib211G0077' => 'dzi', 'Duzib212G0429' => 'dzi', 'Duzib212G0472' => 'dzi', 'ECA233G2617' => 'eca', 'ECA236G4188' => 'eca', 'ECA240G0936' => 'eca', 'ECA240G1129' => 'eca', 'ECA247G0623' => 'eca', 'EL10Ac5g10451' => 'bvu', 'EL10Ac5g10453' => 'bvu', 'EL10Ac5g10894' => 'bvu', 'Eucgr.H00192' => 'egr', 'Eucgr.H00193' => 'egr', 'Eucgr.H00194' => 'egr', 'Eucgr.J01562' => 'egr', 'Eucgr.K03301' => 'egr', 'FAN02G0632' => 'fan', 'FAN05G5378' => 'fan', 'FAN09G3247' => 'fan', 'FAN12G0435' => 'fan', 'FAN12G2426' => 'fan', 'FAN14G1707' => 'fan', 'FAN14G4725' => 'fan', 'FAN15G2071' => 'fan', 'FAN17G3065' => 'fan', 'FAN19G1376' => 'fan', 'FAN20G0354' => 'fan', 'FAN20G2429' => 'fan', 'FAN20G2658' => 'fan', 'FAN24G2343' => 'fan', 'FAN27G2362' => 'fan', 'FAN28G1765' => 'fan', 'FvH4_1g16020' => 'fve', 'FvH4_2g04890' => 'fve', 'FvH4_2g22270' => 'fve', 'FvH4_4g02630' => 'fve', 'FvH4_4g02640' => 'fve', 'FvH4_6g02650' => 'fve', 'Glyma.02G140600' => 'gma', 'Glyma.03G159900' => 'gma', 'Glyma.05G234800' => 'gma', 'Glyma.07G269600' => 'gma', 'Glyma.08G042300' => 'gma', 'Glyma.10G033500' => 'gma', 'Glyma.10G185200' => 'gma', 'Glyma.17G004300' => 'gma', 'Glyma.19G161900' => 'gma', 'Glyma.20G205100' => 'gma', 'Glyma.20G205200' => 'gma', 'Gohir.A01G139101' => 'ghi', 'Gohir.A02G035600' => 'ghi', 'Gohir.A02G117901' => 'ghi', 'Gohir.A07G210100' => 'ghi', 'Gohir.A07G210200' => 'ghi', 'Gohir.A08G061100' => 'ghi', 'Gohir.A09G223000' => 'ghi', 'Gohir.A09G223100' => 'ghi', 'Gohir.A10G113900' => 'ghi', 'Gohir.A10G114000' => 'ghi', 'Gohir.D02G042300' => 'ghi', 'Gohir.D07G216100' => 'ghi', 'Gohir.D07G216200' => 'ghi', 'Gohir.D08G070400' => 'ghi', 'Gohir.D09G225000' => 'ghi', 'Gohir.D09G225100' => 'ghi', 'Gohir.D10G152300' => 'ghi', 'Gohir.D10G153200' => 'ghi', 'Gohir.D11G133701' => 'ghi', 'Gorai.004G074100' => 'gra', 'Gorai.005G046800' => 'gra', 'Gorai.006G246500' => 'gra', 'Gorai.006G246600' => 'gra', 'Gorai.007G142900' => 'gra', 'Gorai.011G171000' => 'gra', 'Gorai.011G171100' => 'gra', 'Gorai.013G104300' => 'gra', 'Gorai.013G104400' => 'gra', 'GSVIVG01000754001' => 'vvi', 'GSVIVG01000756001' => 'vvi', 'GSVIVG01010903001' => 'vvi', 'GSVIVG01017623001' => 'vvi', 'GSVIVG01018113001' => 'vvi', 'GSVIVG01018116001' => 'vvi', 'GSVIVG01018118001' => 'vvi', 'HanXRQChr03g0076211' => 'han', 'HanXRQChr03g0092431' => 'han', 'HanXRQChr03g0092441' => 'han', 'HanXRQChr03g0092591' => 'han', 'HanXRQChr03g0092671' => 'han', 'HanXRQChr03g0092681' => 'han', 'HanXRQChr03g0092691' => 'han', 'HanXRQChr03g0092701' => 'han', 'HanXRQChr03g0092721' => 'han', 'HanXRQChr03g0092731' => 'han', 'HanXRQChr04g0113681' => 'han', 'HanXRQChr10g0281371' => 'han', 'HanXRQChr11g0337141' => 'han', 'HanXRQChr13g0424521' => 'han', 'HanXRQChr13g0424531' => 'han', 'HanXRQChr13g0424541' => 'han', 'HanXRQChr16g0498221' => 'han', 'Haze_04377' => 'cav', 'Haze_11298' => 'cav', 'Haze_24547' => 'cav', 'Haze_24550' => 'cav', 'Haze_26587' => 'cav', 'Hma1.2p1_0650F.1_g195410' => 'hma', 'Hma1.2p1_0893F.1_g233470' => 'hma', 'HPP92_006508' => 'vpl', 'HPP92_024780' => 'vpl', 'Hund02688' => 'sun', 'Hund09380' => 'sun', 'Hund09381' => 'sun', 'Hund09832' => 'sun', 'Hund09833' => 'sun', 'Hund11351' => 'sun', 'Hund11513' => 'sun', 'Lalb_Chr06g0162591' => 'lal', 'Lalb_Chr06g0162601' => 'lal', 'Lalb_Chr06g0169321' => 'lal', 'Lalb_Chr09g0330951' => 'lal', 'Lalb_Chr16g0387631' => 'lal', 'Lalb_Chr21g0306241' => 'lal', 'Lalb_Chr25g0290051' => 'lal', 'Lalb_Chr25g0290061' => 'lal', 'Lalb_Chr25g0290071' => 'lal', 'Lj1g0003876' => 'lja', 'Lj1P1207T36' => 'lonja', 'Lj2C1156G12' => 'lonja', 'Lj3A793G39' => 'lonja', 'Lj3C580G2' => 'lonja', 'Lj3C780G2' => 'lonja', 'Lj3C780T4' => 'lonja', 'Lj3C793G9' => 'lonja', 'Lj4g0012960' => 'lja', 'Lj5g0021252' => 'lja', 'Lj5g0021484' => 'lja', 'Lj5g0024528' => 'lja', 'Lj6A399T12' => 'lonja', 'Lj6A656G65' => 'lonja', 'Lsat_1_v5_gn_3_125500' => 'lsa', 'Lsat_1_v5_gn_3_125540' => 'lsa', 'Lsat_1_v5_gn_5_72701' => 'lsa', 'Lsat_1_v5_gn_8_91560' => 'lsa', 'Lsat_1_v5_gn_9_9640' => 'lsa', 'Manes.01G200600' => 'mes', 'Manes.01G200700' => 'mes', 'Manes.03G168900' => 'mes', 'Manes.03G169000' => 'mes', 'Manes.05G085801' => 'mes', 'Manes.05G086200' => 'mes', 'Manes.15G036700' => 'mes', 'Manes.15G036900' => 'mes', 'Mapoly0004s0172' => 'mpo', 'Mapoly0023s0001' => 'mpo', 'Mapoly0142s0012' => 'mpo', 'MBI01_g32854_MAGBIO' => 'mbi', 'MBI11_g24427_MAGBIO' => 'mbi', 'MBI11_g47319_MAGBIO' => 'mbi', 'MCO01G433' => 'mco', 'MD00G1187800' => 'mdo', 'MD04G1226500' => 'mdo', 'MD05G1203900' => 'mdo', 'MD10G1191100' => 'mdo', 'MD12G1243500' => 'mdo', 'MD13G1207000' => 'mdo', 'MD13G1207100' => 'mdo', 'MD16G1208600' => 'mdo', 'Medtr1g050352' => 'mtr', 'Medtr1g070385' => 'mtr', 'Medtr1g070450' => 'mtr', 'Medtr1g075200' => 'mtr', 'Medtr1g075250' => 'mtr', 'Medtr1g075260' => 'mtr', 'Medtr1g475250' => 'mtr', 'Medtr4g075450' => 'mtr', 'Medtr7g096300' => 'mtr', 'Medtr8g105110' => 'mtr', 'MELO3C006470.2' => 'cme', 'MELO3C006471.2' => 'cme', 'MELO3C020772.2' => 'cme', 'MELO3C026780.2' => 'cme', 'MELO3C026781.2' => 'cme', 'Migut.D00390' => 'egut', 'Migut.G00435' => 'egut', 'Migut.G00436' => 'egut', 'Migut.G00718' => 'egut', 'MSTRG.21891' => 'ama', 'MSTRG.26910' => 'ama', 'MSTRG.4099' => 'ama', 'MSTRG.9925' => 'ama', 'Nitab4.5_0000165g0010' => 'nta', 'Nitab4.5_0000209g0180' => 'nta', 'Nitab4.5_0000244g0440' => 'nta', 'Nitab4.5_0000525g0220' => 'nta', 'Nitab4.5_0001597g0020' => 'nta', 'Nitab4.5_0001878g0040' => 'nta', 'Nitab4.5_0001878g0060' => 'nta', 'Nitab4.5_0002838g0100' => 'nta', 'Nitab4.5_0002838g0120' => 'nta', 'Nitab4.5_0004798g0030' => 'nta', 'Nitab4.5_0005420g0010' => 'nta', 'Nitab4.5_0005507g0010' => 'nta', 'Nitab4.5_0005574g0020' => 'nta', 'Nitab4.5_0005838g0010' => 'nta', 'Nitab4.5_0010580g0020' => 'nta', 'Nn1g02599' => 'nnu', 'Nn1g02608' => 'nnu', 'Nn3g17742' => 'nnu', 'Nn3g19534' => 'nnu', 'Nn3g19535' => 'nnu', 'Oeu008790.1' => 'oeu', 'Oeu008792.1' => 'oeu', 'Oeu032590.1' => 'oeu', 'Oeu035349.1' => 'oeu', 'Oeu049791.1' => 'oeu', 'Os01g0774500' => 'osa', 'Os03g0628800' => 'osa', 'Os03g0798600' => 'osa', 'Os05g0508800' => 'osa', 'Peaxi162Scf00036g02018' => 'pax', 'Peaxi162Scf00578g00032' => 'pax', 'Peaxi162Scf00578g00317' => 'pax', 'Peaxi162Scf00785g00114' => 'pax', 'Peaxi162Scf00813g00119' => 'pax', 'Peaxi162Scf00906g00227' => 'pax', 'PGR004G0875' => 'pgr', 'PGR004G2424' => 'pgr', 'PGR031G1239' => 'pgr', 'PGR031G2474' => 'pgr', 'PGR044G0423' => 'pgr', 'PGSC0003DMG400001128' => 'stu', 'PGSC0003DMG400007336' => 'stu', 'PGSC0003DMG400016318' => 'stu', 'PGSC0003DMG400016319' => 'stu', 'PGSC0003DMG400018074' => 'stu', 'Phvul.001G157700' => 'pvu', 'Phvul.002G148550' => 'pvu', 'Phvul.002G320200' => 'pvu', 'Phvul.003G089200' => 'pvu', 'Phvul.007G126000' => 'pvu', 'Phvul.007G126100' => 'pvu', 'Phvul.007G178000' => 'pvu', 'Phvul.007G178200' => 'pvu', 'Potri.002G043000' => 'ptr', 'Potri.002G043200' => 'ptr', 'Potri.003G123750' => 'ptr', 'Potri.005G055401' => 'ptr', 'Potri.005G219700' => 'ptr', 'Potri.005G220000' => 'ptr', 'Potri.008G161901' => 'ptr', 'Potri.008G162000' => 'ptr', 'Potri.008G162400' => 'ptr', 'Potri.010G076900' => 'ptr', 'Pp3c12_9180' => 'ppa', 'Pp3c13_19770' => 'ppa', 'Pp3c14_22950' => 'ppa', 'Pp3c16_12160' => 'ppa', 'Pp3c27_7820' => 'ppa', 'Pp3c2_3490' => 'ppa', 'Pp3c3_23700' => 'ppa', 'Pp3c3_36520' => 'ppa', 'Pp3c4_15250' => 'ppa', 'PRCOL_00007002' => 'pco', 'Prupe.1G030600' => 'ppe', 'Prupe.1G030700' => 'ppe', 'Prupe.6G345200' => 'ppe', 'Prupe.8G230300' => 'ppe', 'Prupe.8G230500' => 'ppe', 'Psat3g059600' => 'psa', 'Psat5g200920' => 'psa', 'Psat6g056440' => 'psa', 'Psat6g057360' => 'psa', 'Psat6g134120' => 'psa', 'Psat6g134160' => 'psa', 'Psat7g008640' => 'psa', 'Psat7g185240' => 'psa', 'PSO017G1330' => 'pso', 'PSO063G6097' => 'pso', 'PSO170G0835' => 'pso', 'PSO170G2499' => 'pso', 'PSO210G5058' => 'pso', 'PSO210G6154' => 'pso', 'PSO585G0031' => 'pso', 'PSO832G0264' => 'pso', 'PSO832G4288' => 'pso', 'QL03p027355' => 'qlo', 'QL03p027430' => 'qlo', 'QL04p081380' => 'qlo', 'QL06p015642' => 'qlo', 'QL06p015650' => 'qlo', 'QL06p015686' => 'qlo', 'QL12p042927' => 'qlo', 'QL93p1863_0035' => 'qlo', 'RcHm_v2.0_Chr3g0450581' => 'rch', 'RcHm_v2.0_Chr4g0390371' => 'rch', 'RcHm_v2.0_Chr4g0390381' => 'rch', 'RcHm_v2.0_Chr4g0390491' => 'rch', 'RcHm_v2.0_Chr4g0390501' => 'rch', 'RcHm_v2.0_Chr6g0289231' => 'rch', 'Rhsim04G0190400' => 'rsi', 'Rhsim04G0190500' => 'rsi', 'Rhsim04G0190600' => 'rsi', 'Rhsim13G0031400' => 'rsi', 'Rhsim13G0165600' => 'rsi', 'RhsimUnG0114600' => 'rsi', 'RhsimUnG0114700' => 'rsi', 'Sabra02G0034800' => 'sbr', 'Sabra02G0035100' => 'sbr', 'Sabra05G0168600' => 'sbr', 'Sabra05G0168800' => 'sbr', 'Sabra08G0123700' => 'sbr', 'Sabra10G0031900' => 'sbr', 'Sabra13G0039000' => 'sbr', 'SalBow2G0782' => 'sbo', 'SalBow2G1403' => 'sbo', 'SalBow4G0074' => 'sbo', 'SalBow4G2635' => 'sbo', 'SalBow5G3010' => 'sbo', 'Sc05g0000870' => 'sci', 'Sc05g0000890' => 'sci', 'Sc13g0005000' => 'sci', 'Sc13g0005030' => 'sci', 'Sc19g0003790' => 'sci', 'Sc19g0003800' => 'sci', 'Sed0003467' => 'sed', 'Sed0009355' => 'sed', 'Sed0009894' => 'sed', 'Sed0011972' => 'sed', 'Sed0021483' => 'sed', 'Sed0021750' => 'sed', 'Sed0026279' => 'sed', 'SEGI_05312' => 'sgi', 'SEGI_10112' => 'sgi', 'SEGI_15835' => 'sgi', 'SEGI_30386' => 'sgi', 'SEGI_34122' => 'sgi', 'SEGI_35063' => 'sgi', 'SGA_v2.0_scaffold101G29794' => 'sas', 'SGA_v2.0_scaffold1G00573' => 'sas', 'SGA_v2.0_scaffold79G25637' => 'sas', 'SGA_v2.0_scaffold88G27283' => 'sas', 'SGA_v2.0_scaffold88G27285' => 'sas', 'SGA_v2.0_scaffold88G27331' => 'sas', 'SHI09937' => 'shi', 'SMO119G0302' => 'smo', 'SMO137G0231' => 'smo', 'SMO367G1151' => 'smo', 'Solyc02g082000.3' => 'sly', 'Solyc06g031670.3' => 'sly', 'Solyc06g053810.3' => 'sly', 'Solyc07g025457.1' => 'sly', 'Solyc08g059740.1' => 'sly', 'Solyc08g059750.3' => 'sly', 'Solyc09g083370.3' => 'sly', 'Solyc12g038950.3' => 'sly', 'Sopen02g026630' => 'spe', 'Sopen06g018930' => 'spe', 'Sopen06g018940' => 'spe', 'Sopen08g009460' => 'spe', 'Sopen09g032290' => 'spe', 'Sp1g03080' => 'spa', 'Sp1g03090' => 'spa', 'Sp1g05480' => 'spa', 'Sp2g07860' => 'spa', 'Sp2g08430' => 'spa', 'Sp2g08440' => 'spa', 'Sp2g26200' => 'spa', 'Sp4g13170' => 'spa', 'Sp6g33840' => 'spa', 'SpUn1204_0010' => 'spa', 'TAR365G0908' => 'tar', 'TAR381G1270' => 'tar', 'TAR381G1651' => 'tar', 'TAR625G1131' => 'tar', 'TAR633G0962' => 'tar', 'TAR633G1729' => 'tar', 'TAR633G1864' => 'tar', 'TAR636G0221' => 'tar', 'TAR636G0314' => 'tar', 'TAR636G3202' => 'tar', 'THA.LOC104800805' => 'tha', 'THA.LOC104801096' => 'tha', 'THA.LOC104801555' => 'tha', 'THA.LOC104808491' => 'tha', 'THA.LOC104808595' => 'tha', 'THA.LOC104815985' => 'tha', 'THA.LOC104822250' => 'tha', 'THA.LOC104826071' => 'tha', 'Thecc.01G265200' => 'tca', 'Thecc.01G265300' => 'tca', 'Thecc.01G265700' => 'tca', 'Thecc.03G109100' => 'tca', 'Thecc.04G245900' => 'tca', 'Thecc.04G246000' => 'tca', 'Thhalv10003334m.g' => 'esa', 'Thhalv10005508m.g' => 'esa', 'Thhalv10005643m.g' => 'esa', 'Thhalv10007316m.g' => 'esa', 'Thhalv10009006m.g' => 'esa', 'Thhalv10009309m.g' => 'esa', 'Thhalv10014917m.g' => 'esa', 'Thhalv10014919m.g' => 'esa', 'Thhalv10015393m.g' => 'esa', 'Thhalv10016515m.g' => 'esa', 'Thhalv10029242m.g' => 'esa', 'TPR.G16654' => 'tpr', 'TPR.G20589' => 'tpr', 'TPR.G23029' => 'tpr', 'TPR.G27731' => 'tpr', 'TPR.G28889' => 'tpr', 'TPR.G28899' => 'tpr', 'TPR.G30846' => 'tpr', 'TPR.G5452' => 'tpr', 'TPR.G5713' => 'tpr', 'TPR.G9046' => 'tpr', 'TPR.G9061' => 'tpr', 'TWI09G1075' => 'twi', 'TWI12G0806' => 'twi', 'TWI18G0108' => 'twi', 'TWI53G1361' => 'twi', 'TWI73G0185' => 'twi', 'TWI73G0427' => 'twi', 'unitig_37.g12001' => 'ugi', 'unitig_747.g21660' => 'ugi', 'unitig_748.g7232' => 'ugi', 'unitig_748.g7315' => 'ugi', 'unitig_85.g27262' => 'ugi', 'unitig_92.g28220' => 'ugi', 'vmacro02632' => 'vma', 'vmacro08410' => 'vma', 'vmacro08411' => 'vma', 'vmacro15407' => 'vma', 'VMungo0251G3619' => 'vmu', 'VMungo0720G1204' => 'vmu', 'VMungo0720G1918' => 'vmu', 'VMungo0720G2387' => 'vmu', 'VMungo0720G2961' => 'vmu', 'VMungo1215G2154' => 'vmu', 'VMungo1383G2411' => 'vmu', 'Zm00001eb051130' => 'zma', 'Zm00001eb116830' => 'zma', 'Zm00001eb116850' => 'zma', 'Zm00001eb151740' => 'zma', 'Zm00001eb292360' => 'zma', 'Zm00001eb301640' => 'zma' ), 'gf_id' => 'HOM05D000856', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000856' ), 'data_identifier' => 'HOM05D000856', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000856', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p00010' => 'bna', 'A03p04160' => 'bna', 'A03p17160' => 'bna', 'A04p23370' => 'bna', 'A05p14860' => 'bna', 'A08p37020' => 'bna', 'A09p08050' => 'bna', 'A09p66800' => 'bna', 'A09p67940' => 'bna', 'A10p02680' => 'bna', 'A10p05320' => 'bna', 'Aa31LG1G20560' => 'aar', 'Aa31LG1G20610' => 'aar', 'Aa31LG1G7810' => 'aar', 'Aa31LG5G3590' => 'aar', 'Aa31LG5G6140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3819' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4683' => 'aag', 'Actinidia04480' => 'ach', 'Actinidia05466' => 'ach', 'Actinidia08445' => 'ach', 'Actinidia21170' => 'ach', 'Actinidia24812' => 'ach', 'Actinidia24951' => 'ach', 'Actinidia40088' => 'ach', 'Ah.02g111660' => 'amhyb', 'Ah.11g048900' => 'amhyb', 'Ah.11g049910' => 'amhyb', 'AL1G13870' => 'aly', 'AL1G13880' => 'aly', 'AL1G16760' => 'aly', 'AL390U10020' => 'aly', 'AL4G25520' => 'aly', 'AL6G19890' => 'aly', 'AL6G19900' => 'aly', 'AL6G19910' => 'aly', 'AL8G40100' => 'aly', 'Aqoxy2G03562' => 'aox', 'Aqoxy5G00316' => 'aox', 'Aqoxy5G00926' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1628KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1H403S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2FU6SJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.882I6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8YRY2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YN1SN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AF70II' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZA8L1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F916KL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHRD8H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KTZ8QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S22EMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8M29T' => 'arhy', 'AT1G04270' => 'ath', 'AT1G04280' => 'ath', 'AT1G06750' => 'ath', 'AT1G33850' => 'ath', 'AT2G30630' => 'ath', 'AT5G09490' => 'ath', 'AT5G09500' => 'ath', 'AT5G09510' => 'ath', 'AT5G43640' => 'ath', 'AT5G63070' => 'ath', 'ATR0605G315' => 'atr', 'Atru.chr11.175' => 'acertr', 'Atru.chr11.653' => 'acertr', 'Atru.chr3.1616' => 'acertr', 'Atru.chr4.2230' => 'acertr', 'Atru.chr4.2232' => 'acertr', 'Atru.chr5.1598' => 'acertr', 'Atru.chr5.1600' => 'acertr', 'Atru.chr5.2188' => 'acertr', 'AUR62008326' => 'cqu', 'AUR62011922' => 'cqu', 'AUR62011924' => 'cqu', 'AUR62021771' => 'cqu', 'AUR62032237' => 'cqu', 'AUR62032240' => 'cqu', 'BcaB01g05572' => 'bca', 'BcaB02g10337' => 'bca', 'BcaB04g19944' => 'bca', 'BcaB05g21548' => 'bca', 'BcaB05g21549' => 'bca', 'BcaB05g23227' => 'bca', 'BcaB06g26256' => 'bca', 'BcaB06g26257' => 'bca', 'BcaB06g28379' => 'bca', 'BcaC02g11159' => 'bca', 'BcaC03g13258' => 'bca', 'BcaC03g13259' => 'bca', 'BcaC05g24456' => 'bca', 'BcaC05g24457' => 'bca', 'BcaC07g36922' => 'bca', 'BcaC07g36923' => 'bca', 'BcaC07g42050' => 'bca', 'BcaC07g42176' => 'bca', 'BcaC07g42195' => 'bca', 'BcaC07g42196' => 'bca', 'BcaNung06674' => 'bca', 'BolC2t06351H' => 'bol', 'BolC2t06352H' => 'bol', 'BolC3t12993H' => 'bol', 'BolC4t23525H' => 'bol', 'BolC4t27475H' => 'bol', 'BolC5t29025H' => 'bol', 'BolC5t29026H' => 'bol', 'BolC8t46898H' => 'bol', 'BolC8t46899H' => 'bol', 'BolC8t52630H' => 'bol', 'BolC8t52765H' => 'bol', 'BolC9t53824H' => 'bol', 'BraA03t09760Z' => 'bra', 'BraA03t10990Z' => 'bra', 'BraA05t20413Z' => 'bra', 'BraA08t35602Z' => 'bra', 'BraA09t36458Z' => 'bra', 'BraA09t42018Z' => 'bra', 'BraA09t42129Z' => 'bra', 'BraA10t42536Z' => 'bra', 'BraA10t42537Z' => 'bra', 'C01p10690' => 'bna', 'C02p03890' => 'bna', 'C02p03900' => 'bna', 'C03p04620' => 'bna', 'C04p19870' => 'bna', 'C04p59670' => 'bna', 'C05p02460' => 'bna', 'C05p02470' => 'bna', 'C08p00980' => 'bna', 'C08p00990' => 'bna', 'C08p51030' => 'bna', 'C08p52360' => 'bna', 'C09p09120' => 'bna', 'CAN.G19.15' => 'can', 'CAN.G251.10' => 'can', 'CAN.G251.9' => 'can', 'CAN.G398.24' => 'can', 'CAN.G410.32' => 'can', 'CAN.G881.2' => 'can', 'CANSAT01G3025' => 'cansat', 'CANSAT78G1211' => 'cansat', 'CANSAT78G1218' => 'cansat', 'CANSAT78G1521' => 'cansat', 'CANSAT78G1670' => 'cansat', 'CARHR003600' => 'chi', 'CARHR003610' => 'chi', 'CARHR006290' => 'chi', 'CARHR006430' => 'chi', 'CARHR124110' => 'chi', 'CARHR203870' => 'chi', 'CARHR203880' => 'chi', 'CARHR203890' => 'chi', 'CARHR276880' => 'chi', 'Carub.0001s0346' => 'cru', 'Carub.0001s0347' => 'cru', 'Carub.0001s0607' => 'cru', 'Carub.0003s2768' => 'cru', 'Carub.0003s2769' => 'cru', 'Carub.0004s1178' => 'cru', 'Carub.0006s0806' => 'cru', 'Carub.0006s0807' => 'cru', 'Carub.0006s0808' => 'cru', 'Carub.0008s0501' => 'cru', 'Carub.0008s2379' => 'cru', 'Ca_08655_v3' => 'car', 'Ca_08922_v3' => 'car', 'Ca_08923_v3' => 'car', 'Ca_09119_v3' => 'car', 'Ca_09703_v3' => 'car', 'Ca_09705_v3' => 'car', 'Ca_09835_v3' => 'car', 'Ca_26403_v3' => 'car', 'Ca_30719_v3' => 'car', 'CBR_g17958' => 'cbr', 'CBR_g40516' => 'cbr', 'Cc00_g05350' => 'ccan', 'Cc01_g18690' => 'ccan', 'Cc03_g04830' => 'ccan', 'Cc03_g04850' => 'ccan', 'CDE02G4469' => 'cde', 'CDE06G0883' => 'cde', 'CDE06G1295' => 'cde', 'CDE06G1390' => 'cde', 'CDE07G0584' => 'cde', 'CDE07G1084' => 'cde', 'CDE08G1259' => 'cde', 'Cfa002341' => 'cfa', 'Cfa024337' => 'cfa', 'Ciclev10004749m.g' => 'ccl', 'Ciclev10006127m.g' => 'ccl', 'Ciclev10019720m.g' => 'ccl', 'Ciclev10022652m.g' => 'ccl', 'CiPaw.01G190400' => 'cil', 'CiPaw.01G190500' => 'cil', 'CiPaw.02G116400' => 'cil', 'CiPaw.02G116500' => 'cil', 'CiPaw.04G183000' => 'cil', 'CiPaw.04G183300' => 'cil', 'ClCG05G004610' => 'cla', 'ClCG05G004620' => 'cla', 'ClCG06G006730' => 'cla', 'ClCG06G006740' => 'cla', 'ClCG11G003690' => 'cla', 'COL.COLO4_08276' => 'col', 'COL.COLO4_08277' => 'col', 'COL.COLO4_15787' => 'col', 'COL.COLO4_15789' => 'col', 'Cpa.g.c44815' => 'cpa', 'Cpa.g.sc52.144' => 'cpa', 'Cpa.g.sc58.46' => 'cpa', 'Cpa.g.sc58.47' => 'cpa', 'Cre08.g360900' => 'cre', 'CsaV3_2G013030' => 'csa', 'CsaV3_2G013050' => 'csa', 'CsaV3_2G015620' => 'csa', 'CsaV3_3G012590' => 'csa', 'CsaV3_3G012600' => 'csa', 'CSS0001641' => 'camsi', 'CSS0008310' => 'camsi', 'CSS0013011' => 'camsi', 'CSS0017147' => 'camsi', 'CSS0022970' => 'camsi', 'CSS0025655' => 'camsi', 'CSS0028665' => 'camsi', 'CSS0029117' => 'camsi', 'CSS0032024' => 'camsi', 'CSS0039681' => 'camsi', 'CSS0046516' => 'camsi', 'CSS0050307' => 'camsi', 'DCAR_005871' => 'dca', 'DCAR_007342' => 'dca', 'DCAR_024228' => 'dca', 'DCAR_027277' => 'dca', 'DCAR_030718' => 'dca', 'Dinv20287' => 'din', 'Dinv22461' => 'din', 'Dinv22464' => 'din', 'Dinv29912' => 'din', 'Dinv29913' => 'din', 'Dinv34580' => 'din', 'Dinv34582' => 'din', 'Dinv44632' => 'din', 'Duzib052G0266' => 'dzi', 'Duzib133G0907' => 'dzi', 'Duzib133G1034' => 'dzi', 'Duzib138G0207' => 'dzi', 'Duzib138G0491' => 'dzi', 'Duzib151G0812' => 'dzi', 'Duzib151G1166' => 'dzi', 'Duzib168G0192' => 'dzi', 'Duzib211G0077' => 'dzi', 'Duzib212G0429' => 'dzi', 'Duzib212G0472' => 'dzi', 'ECA233G2617' => 'eca', 'ECA236G4188' => 'eca', 'ECA240G0936' => 'eca', 'ECA240G1129' => 'eca', 'ECA247G0623' => 'eca', 'EL10Ac5g10451' => 'bvu', 'EL10Ac5g10453' => 'bvu', 'EL10Ac5g10894' => 'bvu', 'Eucgr.H00192' => 'egr', 'Eucgr.H00193' => 'egr', 'Eucgr.H00194' => 'egr', 'Eucgr.J01562' => 'egr', 'Eucgr.K03301' => 'egr', 'FAN02G0632' => 'fan', 'FAN05G5378' => 'fan', 'FAN09G3247' => 'fan', 'FAN12G0435' => 'fan', 'FAN12G2426' => 'fan', 'FAN14G1707' => 'fan', 'FAN14G4725' => 'fan', 'FAN15G2071' => 'fan', 'FAN17G3065' => 'fan', 'FAN19G1376' => 'fan', 'FAN20G0354' => 'fan', 'FAN20G2429' => 'fan', 'FAN20G2658' => 'fan', 'FAN24G2343' => 'fan', 'FAN27G2362' => 'fan', 'FAN28G1765' => 'fan', 'FvH4_1g16020' => 'fve', 'FvH4_2g04890' => 'fve', 'FvH4_2g22270' => 'fve', 'FvH4_4g02630' => 'fve', 'FvH4_4g02640' => 'fve', 'FvH4_6g02650' => 'fve', 'Glyma.02G140600' => 'gma', 'Glyma.03G159900' => 'gma', 'Glyma.05G234800' => 'gma', 'Glyma.07G269600' => 'gma', 'Glyma.08G042300' => 'gma', 'Glyma.10G033500' => 'gma', 'Glyma.10G185200' => 'gma', 'Glyma.17G004300' => 'gma', 'Glyma.19G161900' => 'gma', 'Glyma.20G205100' => 'gma', 'Glyma.20G205200' => 'gma', 'Gohir.A01G139101' => 'ghi', 'Gohir.A02G035600' => 'ghi', 'Gohir.A02G117901' => 'ghi', 'Gohir.A07G210100' => 'ghi', 'Gohir.A07G210200' => 'ghi', 'Gohir.A08G061100' => 'ghi', 'Gohir.A09G223000' => 'ghi', 'Gohir.A09G223100' => 'ghi', 'Gohir.A10G113900' => 'ghi', 'Gohir.A10G114000' => 'ghi', 'Gohir.D02G042300' => 'ghi', 'Gohir.D07G216100' => 'ghi', 'Gohir.D07G216200' => 'ghi', 'Gohir.D08G070400' => 'ghi', 'Gohir.D09G225000' => 'ghi', 'Gohir.D09G225100' => 'ghi', 'Gohir.D10G152300' => 'ghi', 'Gohir.D10G153200' => 'ghi', 'Gohir.D11G133701' => 'ghi', 'Gorai.004G074100' => 'gra', 'Gorai.005G046800' => 'gra', 'Gorai.006G246500' => 'gra', 'Gorai.006G246600' => 'gra', 'Gorai.007G142900' => 'gra', 'Gorai.011G171000' => 'gra', 'Gorai.011G171100' => 'gra', 'Gorai.013G104300' => 'gra', 'Gorai.013G104400' => 'gra', 'GSVIVG01000754001' => 'vvi', 'GSVIVG01000756001' => 'vvi', 'GSVIVG01010903001' => 'vvi', 'GSVIVG01017623001' => 'vvi', 'GSVIVG01018113001' => 'vvi', 'GSVIVG01018116001' => 'vvi', 'GSVIVG01018118001' => 'vvi', 'HanXRQChr03g0076211' => 'han', 'HanXRQChr03g0092431' => 'han', 'HanXRQChr03g0092441' => 'han', 'HanXRQChr03g0092591' => 'han', 'HanXRQChr03g0092671' => 'han', 'HanXRQChr03g0092681' => 'han', 'HanXRQChr03g0092691' => 'han', 'HanXRQChr03g0092701' => 'han', 'HanXRQChr03g0092721' => 'han', 'HanXRQChr03g0092731' => 'han', 'HanXRQChr04g0113681' => 'han', 'HanXRQChr10g0281371' => 'han', 'HanXRQChr11g0337141' => 'han', 'HanXRQChr13g0424521' => 'han', 'HanXRQChr13g0424531' => 'han', 'HanXRQChr13g0424541' => 'han', 'HanXRQChr16g0498221' => 'han', 'Haze_04377' => 'cav', 'Haze_11298' => 'cav', 'Haze_24547' => 'cav', 'Haze_24550' => 'cav', 'Haze_26587' => 'cav', 'Hma1.2p1_0650F.1_g195410' => 'hma', 'Hma1.2p1_0893F.1_g233470' => 'hma', 'HPP92_006508' => 'vpl', 'HPP92_024780' => 'vpl', 'Hund02688' => 'sun', 'Hund09380' => 'sun', 'Hund09381' => 'sun', 'Hund09832' => 'sun', 'Hund09833' => 'sun', 'Hund11351' => 'sun', 'Hund11513' => 'sun', 'Lalb_Chr06g0162591' => 'lal', 'Lalb_Chr06g0162601' => 'lal', 'Lalb_Chr06g0169321' => 'lal', 'Lalb_Chr09g0330951' => 'lal', 'Lalb_Chr16g0387631' => 'lal', 'Lalb_Chr21g0306241' => 'lal', 'Lalb_Chr25g0290051' => 'lal', 'Lalb_Chr25g0290061' => 'lal', 'Lalb_Chr25g0290071' => 'lal', 'Lj1g0003876' => 'lja', 'Lj1P1207T36' => 'lonja', 'Lj2C1156G12' => 'lonja', 'Lj3A793G39' => 'lonja', 'Lj3C580G2' => 'lonja', 'Lj3C780G2' => 'lonja', 'Lj3C780T4' => 'lonja', 'Lj3C793G9' => 'lonja', 'Lj4g0012960' => 'lja', 'Lj5g0021252' => 'lja', 'Lj5g0021484' => 'lja', 'Lj5g0024528' => 'lja', 'Lj6A399T12' => 'lonja', 'Lj6A656G65' => 'lonja', 'Lsat_1_v5_gn_3_125500' => 'lsa', 'Lsat_1_v5_gn_3_125540' => 'lsa', 'Lsat_1_v5_gn_5_72701' => 'lsa', 'Lsat_1_v5_gn_8_91560' => 'lsa', 'Lsat_1_v5_gn_9_9640' => 'lsa', 'Manes.01G200600' => 'mes', 'Manes.01G200700' => 'mes', 'Manes.03G168900' => 'mes', 'Manes.03G169000' => 'mes', 'Manes.05G085801' => 'mes', 'Manes.05G086200' => 'mes', 'Manes.15G036700' => 'mes', 'Manes.15G036900' => 'mes', 'Mapoly0004s0172' => 'mpo', 'Mapoly0023s0001' => 'mpo', 'Mapoly0142s0012' => 'mpo', 'MBI01_g32854_MAGBIO' => 'mbi', 'MBI11_g24427_MAGBIO' => 'mbi', 'MBI11_g47319_MAGBIO' => 'mbi', 'MCO01G433' => 'mco', 'MD00G1187800' => 'mdo', 'MD04G1226500' => 'mdo', 'MD05G1203900' => 'mdo', 'MD10G1191100' => 'mdo', 'MD12G1243500' => 'mdo', 'MD13G1207000' => 'mdo', 'MD13G1207100' => 'mdo', 'MD16G1208600' => 'mdo', 'Medtr1g050352' => 'mtr', 'Medtr1g070385' => 'mtr', 'Medtr1g070450' => 'mtr', 'Medtr1g075200' => 'mtr', 'Medtr1g075250' => 'mtr', 'Medtr1g075260' => 'mtr', 'Medtr1g475250' => 'mtr', 'Medtr4g075450' => 'mtr', 'Medtr7g096300' => 'mtr', 'Medtr8g105110' => 'mtr', 'MELO3C006470.2' => 'cme', 'MELO3C006471.2' => 'cme', 'MELO3C020772.2' => 'cme', 'MELO3C026780.2' => 'cme', 'MELO3C026781.2' => 'cme', 'Migut.D00390' => 'egut', 'Migut.G00435' => 'egut', 'Migut.G00436' => 'egut', 'Migut.G00718' => 'egut', 'MSTRG.21891' => 'ama', 'MSTRG.26910' => 'ama', 'MSTRG.4099' => 'ama', 'MSTRG.9925' => 'ama', 'Nitab4.5_0000165g0010' => 'nta', 'Nitab4.5_0000209g0180' => 'nta', 'Nitab4.5_0000244g0440' => 'nta', 'Nitab4.5_0000525g0220' => 'nta', 'Nitab4.5_0001597g0020' => 'nta', 'Nitab4.5_0001878g0040' => 'nta', 'Nitab4.5_0001878g0060' => 'nta', 'Nitab4.5_0002838g0100' => 'nta', 'Nitab4.5_0002838g0120' => 'nta', 'Nitab4.5_0004798g0030' => 'nta', 'Nitab4.5_0005420g0010' => 'nta', 'Nitab4.5_0005507g0010' => 'nta', 'Nitab4.5_0005574g0020' => 'nta', 'Nitab4.5_0005838g0010' => 'nta', 'Nitab4.5_0010580g0020' => 'nta', 'Nn1g02599' => 'nnu', 'Nn1g02608' => 'nnu', 'Nn3g17742' => 'nnu', 'Nn3g19534' => 'nnu', 'Nn3g19535' => 'nnu', 'Oeu008790.1' => 'oeu', 'Oeu008792.1' => 'oeu', 'Oeu032590.1' => 'oeu', 'Oeu035349.1' => 'oeu', 'Oeu049791.1' => 'oeu', 'Os01g0774500' => 'osa', 'Os03g0628800' => 'osa', 'Os03g0798600' => 'osa', 'Os05g0508800' => 'osa', 'Peaxi162Scf00036g02018' => 'pax', 'Peaxi162Scf00578g00032' => 'pax', 'Peaxi162Scf00578g00317' => 'pax', 'Peaxi162Scf00785g00114' => 'pax', 'Peaxi162Scf00813g00119' => 'pax', 'Peaxi162Scf00906g00227' => 'pax', 'PGR004G0875' => 'pgr', 'PGR004G2424' => 'pgr', 'PGR031G1239' => 'pgr', 'PGR031G2474' => 'pgr', 'PGR044G0423' => 'pgr', 'PGSC0003DMG400001128' => 'stu', 'PGSC0003DMG400007336' => 'stu', 'PGSC0003DMG400016318' => 'stu', 'PGSC0003DMG400016319' => 'stu', 'PGSC0003DMG400018074' => 'stu', 'Phvul.001G157700' => 'pvu', 'Phvul.002G148550' => 'pvu', 'Phvul.002G320200' => 'pvu', 'Phvul.003G089200' => 'pvu', 'Phvul.007G126000' => 'pvu', 'Phvul.007G126100' => 'pvu', 'Phvul.007G178000' => 'pvu', 'Phvul.007G178200' => 'pvu', 'Potri.002G043000' => 'ptr', 'Potri.002G043200' => 'ptr', 'Potri.003G123750' => 'ptr', 'Potri.005G055401' => 'ptr', 'Potri.005G219700' => 'ptr', 'Potri.005G220000' => 'ptr', 'Potri.008G161901' => 'ptr', 'Potri.008G162000' => 'ptr', 'Potri.008G162400' => 'ptr', 'Potri.010G076900' => 'ptr', 'Pp3c12_9180' => 'ppa', 'Pp3c13_19770' => 'ppa', 'Pp3c14_22950' => 'ppa', 'Pp3c16_12160' => 'ppa', 'Pp3c27_7820' => 'ppa', 'Pp3c2_3490' => 'ppa', 'Pp3c3_23700' => 'ppa', 'Pp3c3_36520' => 'ppa', 'Pp3c4_15250' => 'ppa', 'PRCOL_00007002' => 'pco', 'Prupe.1G030600' => 'ppe', 'Prupe.1G030700' => 'ppe', 'Prupe.6G345200' => 'ppe', 'Prupe.8G230300' => 'ppe', 'Prupe.8G230500' => 'ppe', 'Psat3g059600' => 'psa', 'Psat5g200920' => 'psa', 'Psat6g056440' => 'psa', 'Psat6g057360' => 'psa', 'Psat6g134120' => 'psa', 'Psat6g134160' => 'psa', 'Psat7g008640' => 'psa', 'Psat7g185240' => 'psa', 'PSO017G1330' => 'pso', 'PSO063G6097' => 'pso', 'PSO170G0835' => 'pso', 'PSO170G2499' => 'pso', 'PSO210G5058' => 'pso', 'PSO210G6154' => 'pso', 'PSO585G0031' => 'pso', 'PSO832G0264' => 'pso', 'PSO832G4288' => 'pso', 'QL03p027355' => 'qlo', 'QL03p027430' => 'qlo', 'QL04p081380' => 'qlo', 'QL06p015642' => 'qlo', 'QL06p015650' => 'qlo', 'QL06p015686' => 'qlo', 'QL12p042927' => 'qlo', 'QL93p1863_0035' => 'qlo', 'RcHm_v2.0_Chr3g0450581' => 'rch', 'RcHm_v2.0_Chr4g0390371' => 'rch', 'RcHm_v2.0_Chr4g0390381' => 'rch', 'RcHm_v2.0_Chr4g0390491' => 'rch', 'RcHm_v2.0_Chr4g0390501' => 'rch', 'RcHm_v2.0_Chr6g0289231' => 'rch', 'Rhsim04G0190400' => 'rsi', 'Rhsim04G0190500' => 'rsi', 'Rhsim04G0190600' => 'rsi', 'Rhsim13G0031400' => 'rsi', 'Rhsim13G0165600' => 'rsi', 'RhsimUnG0114600' => 'rsi', 'RhsimUnG0114700' => 'rsi', 'Sabra02G0034800' => 'sbr', 'Sabra02G0035100' => 'sbr', 'Sabra05G0168600' => 'sbr', 'Sabra05G0168800' => 'sbr', 'Sabra08G0123700' => 'sbr', 'Sabra10G0031900' => 'sbr', 'Sabra13G0039000' => 'sbr', 'SalBow2G0782' => 'sbo', 'SalBow2G1403' => 'sbo', 'SalBow4G0074' => 'sbo', 'SalBow4G2635' => 'sbo', 'SalBow5G3010' => 'sbo', 'Sc05g0000870' => 'sci', 'Sc05g0000890' => 'sci', 'Sc13g0005000' => 'sci', 'Sc13g0005030' => 'sci', 'Sc19g0003790' => 'sci', 'Sc19g0003800' => 'sci', 'Sed0003467' => 'sed', 'Sed0009355' => 'sed', 'Sed0009894' => 'sed', 'Sed0011972' => 'sed', 'Sed0021483' => 'sed', 'Sed0021750' => 'sed', 'Sed0026279' => 'sed', 'SEGI_05312' => 'sgi', 'SEGI_10112' => 'sgi', 'SEGI_15835' => 'sgi', 'SEGI_30386' => 'sgi', 'SEGI_34122' => 'sgi', 'SEGI_35063' => 'sgi', 'SGA_v2.0_scaffold101G29794' => 'sas', 'SGA_v2.0_scaffold1G00573' => 'sas', 'SGA_v2.0_scaffold79G25637' => 'sas', 'SGA_v2.0_scaffold88G27283' => 'sas', 'SGA_v2.0_scaffold88G27285' => 'sas', 'SGA_v2.0_scaffold88G27331' => 'sas', 'SHI09937' => 'shi', 'SMO119G0302' => 'smo', 'SMO137G0231' => 'smo', 'SMO367G1151' => 'smo', 'Solyc02g082000.3' => 'sly', 'Solyc06g031670.3' => 'sly', 'Solyc06g053810.3' => 'sly', 'Solyc07g025457.1' => 'sly', 'Solyc08g059740.1' => 'sly', 'Solyc08g059750.3' => 'sly', 'Solyc09g083370.3' => 'sly', 'Solyc12g038950.3' => 'sly', 'Sopen02g026630' => 'spe', 'Sopen06g018930' => 'spe', 'Sopen06g018940' => 'spe', 'Sopen08g009460' => 'spe', 'Sopen09g032290' => 'spe', 'Sp1g03080' => 'spa', 'Sp1g03090' => 'spa', 'Sp1g05480' => 'spa', 'Sp2g07860' => 'spa', 'Sp2g08430' => 'spa', 'Sp2g08440' => 'spa', 'Sp2g26200' => 'spa', 'Sp4g13170' => 'spa', 'Sp6g33840' => 'spa', 'SpUn1204_0010' => 'spa', 'TAR365G0908' => 'tar', 'TAR381G1270' => 'tar', 'TAR381G1651' => 'tar', 'TAR625G1131' => 'tar', 'TAR633G0962' => 'tar', 'TAR633G1729' => 'tar', 'TAR633G1864' => 'tar', 'TAR636G0221' => 'tar', 'TAR636G0314' => 'tar', 'TAR636G3202' => 'tar', 'THA.LOC104800805' => 'tha', 'THA.LOC104801096' => 'tha', 'THA.LOC104801555' => 'tha', 'THA.LOC104808491' => 'tha', 'THA.LOC104808595' => 'tha', 'THA.LOC104815985' => 'tha', 'THA.LOC104822250' => 'tha', 'THA.LOC104826071' => 'tha', 'Thecc.01G265200' => 'tca', 'Thecc.01G265300' => 'tca', 'Thecc.01G265700' => 'tca', 'Thecc.03G109100' => 'tca', 'Thecc.04G245900' => 'tca', 'Thecc.04G246000' => 'tca', 'Thhalv10003334m.g' => 'esa', 'Thhalv10005508m.g' => 'esa', 'Thhalv10005643m.g' => 'esa', 'Thhalv10007316m.g' => 'esa', 'Thhalv10009006m.g' => 'esa', 'Thhalv10009309m.g' => 'esa', 'Thhalv10014917m.g' => 'esa', 'Thhalv10014919m.g' => 'esa', 'Thhalv10015393m.g' => 'esa', 'Thhalv10016515m.g' => 'esa', 'Thhalv10029242m.g' => 'esa', 'TPR.G16654' => 'tpr', 'TPR.G20589' => 'tpr', 'TPR.G23029' => 'tpr', 'TPR.G27731' => 'tpr', 'TPR.G28889' => 'tpr', 'TPR.G28899' => 'tpr', 'TPR.G30846' => 'tpr', 'TPR.G5452' => 'tpr', 'TPR.G5713' => 'tpr', 'TPR.G9046' => 'tpr', 'TPR.G9061' => 'tpr', 'TWI09G1075' => 'twi', 'TWI12G0806' => 'twi', 'TWI18G0108' => 'twi', 'TWI53G1361' => 'twi', 'TWI73G0185' => 'twi', 'TWI73G0427' => 'twi', 'unitig_37.g12001' => 'ugi', 'unitig_747.g21660' => 'ugi', 'unitig_748.g7232' => 'ugi', 'unitig_748.g7315' => 'ugi', 'unitig_85.g27262' => 'ugi', 'unitig_92.g28220' => 'ugi', 'vmacro02632' => 'vma', 'vmacro08410' => 'vma', 'vmacro08411' => 'vma', 'vmacro15407' => 'vma', 'VMungo0251G3619' => 'vmu', 'VMungo0720G1204' => 'vmu', 'VMungo0720G1918' => 'vmu', 'VMungo0720G2387' => 'vmu', 'VMungo0720G2961' => 'vmu', 'VMungo1215G2154' => 'vmu', 'VMungo1383G2411' => 'vmu', 'Zm00001eb051130' => 'zma', 'Zm00001eb116830' => 'zma', 'Zm00001eb116850' => 'zma', 'Zm00001eb151740' => 'zma', 'Zm00001eb292360' => 'zma', 'Zm00001eb301640' => 'zma' ) $gf_id = 'HOM05D000856' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000856' ) $data_identifier = 'HOM05D000856' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 13, 'ath' => (int) 10, 'atr' => (int) 1, 'acertr' => (int) 8, 'cqu' => (int) 6, 'bca' => (int) 21, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 11, 'car' => (int) 9, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 8, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 5, 'fan' => (int) 16, 'fve' => (int) 6, 'gma' => (int) 11, 'ghi' => (int) 19, 'gra' => (int) 9, 'vvi' => (int) 7, 'han' => (int) 17, 'cav' => (int) 5, 'hma' => (int) 2, 'vpl' => (int) 2, 'sun' => (int) 7, 'lal' => (int) 9, 'lja' => (int) 5, 'lonja' => (int) 9, 'lsa' => (int) 5, 'mes' => (int) 8, 'mpo' => (int) 3, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 10, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 15, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 9, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 9, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 6, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 5, 'spa' => (int) 10, 'tar' => (int) 10, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 11, 'tpr' => (int) 11, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 4, 'vmu' => (int) 7, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb301640' $species_info = array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ) $local_species = 'lonja' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000856', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p00010' => 'bna', 'A03p04160' => 'bna', 'A03p17160' => 'bna', 'A04p23370' => 'bna', 'A05p14860' => 'bna', 'A08p37020' => 'bna', 'A09p08050' => 'bna', 'A09p66800' => 'bna', 'A09p67940' => 'bna', 'A10p02680' => 'bna', 'A10p05320' => 'bna', 'Aa31LG1G20560' => 'aar', 'Aa31LG1G20610' => 'aar', 'Aa31LG1G7810' => 'aar', 'Aa31LG5G3590' => 'aar', 'Aa31LG5G6140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3819' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4683' => 'aag', 'Actinidia04480' => 'ach', 'Actinidia05466' => 'ach', 'Actinidia08445' => 'ach', 'Actinidia21170' => 'ach', 'Actinidia24812' => 'ach', 'Actinidia24951' => 'ach', 'Actinidia40088' => 'ach', 'Ah.02g111660' => 'amhyb', 'Ah.11g048900' => 'amhyb', 'Ah.11g049910' => 'amhyb', 'AL1G13870' => 'aly', 'AL1G13880' => 'aly', 'AL1G16760' => 'aly', 'AL390U10020' => 'aly', 'AL4G25520' => 'aly', 'AL6G19890' => 'aly', 'AL6G19900' => 'aly', 'AL6G19910' => 'aly', 'AL8G40100' => 'aly', 'Aqoxy2G03562' => 'aox', 'Aqoxy5G00316' => 'aox', 'Aqoxy5G00926' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1628KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1H403S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2FU6SJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.882I6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8YRY2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YN1SN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AF70II' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZA8L1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F916KL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHRD8H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KTZ8QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S22EMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8M29T' => 'arhy', 'AT1G04270' => 'ath', 'AT1G04280' => 'ath', 'AT1G06750' => 'ath', 'AT1G33850' => 'ath', 'AT2G30630' => 'ath', 'AT5G09490' => 'ath', 'AT5G09500' => 'ath', 'AT5G09510' => 'ath', 'AT5G43640' => 'ath', 'AT5G63070' => 'ath', 'ATR0605G315' => 'atr', 'Atru.chr11.175' => 'acertr', 'Atru.chr11.653' => 'acertr', 'Atru.chr3.1616' => 'acertr', 'Atru.chr4.2230' => 'acertr', 'Atru.chr4.2232' => 'acertr', 'Atru.chr5.1598' => 'acertr', 'Atru.chr5.1600' => 'acertr', 'Atru.chr5.2188' => 'acertr', 'AUR62008326' => 'cqu', 'AUR62011922' => 'cqu', 'AUR62011924' => 'cqu', 'AUR62021771' => 'cqu', 'AUR62032237' => 'cqu', 'AUR62032240' => 'cqu', 'BcaB01g05572' => 'bca', 'BcaB02g10337' => 'bca', 'BcaB04g19944' => 'bca', 'BcaB05g21548' => 'bca', 'BcaB05g21549' => 'bca', 'BcaB05g23227' => 'bca', 'BcaB06g26256' => 'bca', 'BcaB06g26257' => 'bca', 'BcaB06g28379' => 'bca', 'BcaC02g11159' => 'bca', 'BcaC03g13258' => 'bca', 'BcaC03g13259' => 'bca', 'BcaC05g24456' => 'bca', 'BcaC05g24457' => 'bca', 'BcaC07g36922' => 'bca', 'BcaC07g36923' => 'bca', 'BcaC07g42050' => 'bca', 'BcaC07g42176' => 'bca', 'BcaC07g42195' => 'bca', 'BcaC07g42196' => 'bca', 'BcaNung06674' => 'bca', 'BolC2t06351H' => 'bol', 'BolC2t06352H' => 'bol', 'BolC3t12993H' => 'bol', 'BolC4t23525H' => 'bol', 'BolC4t27475H' => 'bol', 'BolC5t29025H' => 'bol', 'BolC5t29026H' => 'bol', 'BolC8t46898H' => 'bol', 'BolC8t46899H' => 'bol', 'BolC8t52630H' => 'bol', 'BolC8t52765H' => 'bol', 'BolC9t53824H' => 'bol', 'BraA03t09760Z' => 'bra', 'BraA03t10990Z' => 'bra', 'BraA05t20413Z' => 'bra', 'BraA08t35602Z' => 'bra', 'BraA09t36458Z' => 'bra', 'BraA09t42018Z' => 'bra', 'BraA09t42129Z' => 'bra', 'BraA10t42536Z' => 'bra', 'BraA10t42537Z' => 'bra', 'C01p10690' => 'bna', 'C02p03890' => 'bna', 'C02p03900' => 'bna', 'C03p04620' => 'bna', 'C04p19870' => 'bna', 'C04p59670' => 'bna', 'C05p02460' => 'bna', 'C05p02470' => 'bna', 'C08p00980' => 'bna', 'C08p00990' => 'bna', 'C08p51030' => 'bna', 'C08p52360' => 'bna', 'C09p09120' => 'bna', 'CAN.G19.15' => 'can', 'CAN.G251.10' => 'can', 'CAN.G251.9' => 'can', 'CAN.G398.24' => 'can', 'CAN.G410.32' => 'can', 'CAN.G881.2' => 'can', 'CANSAT01G3025' => 'cansat', 'CANSAT78G1211' => 'cansat', 'CANSAT78G1218' => 'cansat', 'CANSAT78G1521' => 'cansat', 'CANSAT78G1670' => 'cansat', 'CARHR003600' => 'chi', 'CARHR003610' => 'chi', 'CARHR006290' => 'chi', 'CARHR006430' => 'chi', 'CARHR124110' => 'chi', 'CARHR203870' => 'chi', 'CARHR203880' => 'chi', 'CARHR203890' => 'chi', 'CARHR276880' => 'chi', 'Carub.0001s0346' => 'cru', 'Carub.0001s0347' => 'cru', 'Carub.0001s0607' => 'cru', 'Carub.0003s2768' => 'cru', 'Carub.0003s2769' => 'cru', 'Carub.0004s1178' => 'cru', 'Carub.0006s0806' => 'cru', 'Carub.0006s0807' => 'cru', 'Carub.0006s0808' => 'cru', 'Carub.0008s0501' => 'cru', 'Carub.0008s2379' => 'cru', 'Ca_08655_v3' => 'car', 'Ca_08922_v3' => 'car', 'Ca_08923_v3' => 'car', 'Ca_09119_v3' => 'car', 'Ca_09703_v3' => 'car', 'Ca_09705_v3' => 'car', 'Ca_09835_v3' => 'car', 'Ca_26403_v3' => 'car', 'Ca_30719_v3' => 'car', 'CBR_g17958' => 'cbr', 'CBR_g40516' => 'cbr', 'Cc00_g05350' => 'ccan', 'Cc01_g18690' => 'ccan', 'Cc03_g04830' => 'ccan', 'Cc03_g04850' => 'ccan', 'CDE02G4469' => 'cde', 'CDE06G0883' => 'cde', 'CDE06G1295' => 'cde', 'CDE06G1390' => 'cde', 'CDE07G0584' => 'cde', 'CDE07G1084' => 'cde', 'CDE08G1259' => 'cde', 'Cfa002341' => 'cfa', 'Cfa024337' => 'cfa', 'Ciclev10004749m.g' => 'ccl', 'Ciclev10006127m.g' => 'ccl', 'Ciclev10019720m.g' => 'ccl', 'Ciclev10022652m.g' => 'ccl', 'CiPaw.01G190400' => 'cil', 'CiPaw.01G190500' => 'cil', 'CiPaw.02G116400' => 'cil', 'CiPaw.02G116500' => 'cil', 'CiPaw.04G183000' => 'cil', 'CiPaw.04G183300' => 'cil', 'ClCG05G004610' => 'cla', 'ClCG05G004620' => 'cla', 'ClCG06G006730' => 'cla', 'ClCG06G006740' => 'cla', 'ClCG11G003690' => 'cla', 'COL.COLO4_08276' => 'col', 'COL.COLO4_08277' => 'col', 'COL.COLO4_15787' => 'col', 'COL.COLO4_15789' => 'col', 'Cpa.g.c44815' => 'cpa', 'Cpa.g.sc52.144' => 'cpa', 'Cpa.g.sc58.46' => 'cpa', 'Cpa.g.sc58.47' => 'cpa', 'Cre08.g360900' => 'cre', 'CsaV3_2G013030' => 'csa', 'CsaV3_2G013050' => 'csa', 'CsaV3_2G015620' => 'csa', 'CsaV3_3G012590' => 'csa', 'CsaV3_3G012600' => 'csa', 'CSS0001641' => 'camsi', 'CSS0008310' => 'camsi', 'CSS0013011' => 'camsi', 'CSS0017147' => 'camsi', 'CSS0022970' => 'camsi', 'CSS0025655' => 'camsi', 'CSS0028665' => 'camsi', 'CSS0029117' => 'camsi', 'CSS0032024' => 'camsi', 'CSS0039681' => 'camsi', 'CSS0046516' => 'camsi', 'CSS0050307' => 'camsi', 'DCAR_005871' => 'dca', 'DCAR_007342' => 'dca', 'DCAR_024228' => 'dca', 'DCAR_027277' => 'dca', 'DCAR_030718' => 'dca', 'Dinv20287' => 'din', 'Dinv22461' => 'din', 'Dinv22464' => 'din', 'Dinv29912' => 'din', 'Dinv29913' => 'din', 'Dinv34580' => 'din', 'Dinv34582' => 'din', 'Dinv44632' => 'din', 'Duzib052G0266' => 'dzi', 'Duzib133G0907' => 'dzi', 'Duzib133G1034' => 'dzi', 'Duzib138G0207' => 'dzi', 'Duzib138G0491' => 'dzi', 'Duzib151G0812' => 'dzi', 'Duzib151G1166' => 'dzi', 'Duzib168G0192' => 'dzi', 'Duzib211G0077' => 'dzi', 'Duzib212G0429' => 'dzi', 'Duzib212G0472' => 'dzi', 'ECA233G2617' => 'eca', 'ECA236G4188' => 'eca', 'ECA240G0936' => 'eca', 'ECA240G1129' => 'eca', 'ECA247G0623' => 'eca', 'EL10Ac5g10451' => 'bvu', 'EL10Ac5g10453' => 'bvu', 'EL10Ac5g10894' => 'bvu', 'Eucgr.H00192' => 'egr', 'Eucgr.H00193' => 'egr', 'Eucgr.H00194' => 'egr', 'Eucgr.J01562' => 'egr', 'Eucgr.K03301' => 'egr', 'FAN02G0632' => 'fan', 'FAN05G5378' => 'fan', 'FAN09G3247' => 'fan', 'FAN12G0435' => 'fan', 'FAN12G2426' => 'fan', 'FAN14G1707' => 'fan', 'FAN14G4725' => 'fan', 'FAN15G2071' => 'fan', 'FAN17G3065' => 'fan', 'FAN19G1376' => 'fan', 'FAN20G0354' => 'fan', 'FAN20G2429' => 'fan', 'FAN20G2658' => 'fan', 'FAN24G2343' => 'fan', 'FAN27G2362' => 'fan', 'FAN28G1765' => 'fan', 'FvH4_1g16020' => 'fve', 'FvH4_2g04890' => 'fve', 'FvH4_2g22270' => 'fve', 'FvH4_4g02630' => 'fve', 'FvH4_4g02640' => 'fve', 'FvH4_6g02650' => 'fve', 'Glyma.02G140600' => 'gma', 'Glyma.03G159900' => 'gma', 'Glyma.05G234800' => 'gma', 'Glyma.07G269600' => 'gma', 'Glyma.08G042300' => 'gma', 'Glyma.10G033500' => 'gma', 'Glyma.10G185200' => 'gma', 'Glyma.17G004300' => 'gma', 'Glyma.19G161900' => 'gma', 'Glyma.20G205100' => 'gma', 'Glyma.20G205200' => 'gma', 'Gohir.A01G139101' => 'ghi', 'Gohir.A02G035600' => 'ghi', 'Gohir.A02G117901' => 'ghi', 'Gohir.A07G210100' => 'ghi', 'Gohir.A07G210200' => 'ghi', 'Gohir.A08G061100' => 'ghi', 'Gohir.A09G223000' => 'ghi', 'Gohir.A09G223100' => 'ghi', 'Gohir.A10G113900' => 'ghi', 'Gohir.A10G114000' => 'ghi', 'Gohir.D02G042300' => 'ghi', 'Gohir.D07G216100' => 'ghi', 'Gohir.D07G216200' => 'ghi', 'Gohir.D08G070400' => 'ghi', 'Gohir.D09G225000' => 'ghi', 'Gohir.D09G225100' => 'ghi', 'Gohir.D10G152300' => 'ghi', 'Gohir.D10G153200' => 'ghi', 'Gohir.D11G133701' => 'ghi', 'Gorai.004G074100' => 'gra', 'Gorai.005G046800' => 'gra', 'Gorai.006G246500' => 'gra', 'Gorai.006G246600' => 'gra', 'Gorai.007G142900' => 'gra', 'Gorai.011G171000' => 'gra', 'Gorai.011G171100' => 'gra', 'Gorai.013G104300' => 'gra', 'Gorai.013G104400' => 'gra', 'GSVIVG01000754001' => 'vvi', 'GSVIVG01000756001' => 'vvi', 'GSVIVG01010903001' => 'vvi', 'GSVIVG01017623001' => 'vvi', 'GSVIVG01018113001' => 'vvi', 'GSVIVG01018116001' => 'vvi', 'GSVIVG01018118001' => 'vvi', 'HanXRQChr03g0076211' => 'han', 'HanXRQChr03g0092431' => 'han', 'HanXRQChr03g0092441' => 'han', 'HanXRQChr03g0092591' => 'han', 'HanXRQChr03g0092671' => 'han', 'HanXRQChr03g0092681' => 'han', 'HanXRQChr03g0092691' => 'han', 'HanXRQChr03g0092701' => 'han', 'HanXRQChr03g0092721' => 'han', 'HanXRQChr03g0092731' => 'han', 'HanXRQChr04g0113681' => 'han', 'HanXRQChr10g0281371' => 'han', 'HanXRQChr11g0337141' => 'han', 'HanXRQChr13g0424521' => 'han', 'HanXRQChr13g0424531' => 'han', 'HanXRQChr13g0424541' => 'han', 'HanXRQChr16g0498221' => 'han', 'Haze_04377' => 'cav', 'Haze_11298' => 'cav', 'Haze_24547' => 'cav', 'Haze_24550' => 'cav', 'Haze_26587' => 'cav', 'Hma1.2p1_0650F.1_g195410' => 'hma', 'Hma1.2p1_0893F.1_g233470' => 'hma', 'HPP92_006508' => 'vpl', 'HPP92_024780' => 'vpl', 'Hund02688' => 'sun', 'Hund09380' => 'sun', 'Hund09381' => 'sun', 'Hund09832' => 'sun', 'Hund09833' => 'sun', 'Hund11351' => 'sun', 'Hund11513' => 'sun', 'Lalb_Chr06g0162591' => 'lal', 'Lalb_Chr06g0162601' => 'lal', 'Lalb_Chr06g0169321' => 'lal', 'Lalb_Chr09g0330951' => 'lal', 'Lalb_Chr16g0387631' => 'lal', 'Lalb_Chr21g0306241' => 'lal', 'Lalb_Chr25g0290051' => 'lal', 'Lalb_Chr25g0290061' => 'lal', 'Lalb_Chr25g0290071' => 'lal', 'Lj1g0003876' => 'lja', 'Lj1P1207T36' => 'lonja', 'Lj2C1156G12' => 'lonja', 'Lj3A793G39' => 'lonja', 'Lj3C580G2' => 'lonja', 'Lj3C780G2' => 'lonja', 'Lj3C780T4' => 'lonja', 'Lj3C793G9' => 'lonja', 'Lj4g0012960' => 'lja', 'Lj5g0021252' => 'lja', 'Lj5g0021484' => 'lja', 'Lj5g0024528' => 'lja', 'Lj6A399T12' => 'lonja', 'Lj6A656G65' => 'lonja', 'Lsat_1_v5_gn_3_125500' => 'lsa', 'Lsat_1_v5_gn_3_125540' => 'lsa', 'Lsat_1_v5_gn_5_72701' => 'lsa', 'Lsat_1_v5_gn_8_91560' => 'lsa', 'Lsat_1_v5_gn_9_9640' => 'lsa', 'Manes.01G200600' => 'mes', 'Manes.01G200700' => 'mes', 'Manes.03G168900' => 'mes', 'Manes.03G169000' => 'mes', 'Manes.05G085801' => 'mes', 'Manes.05G086200' => 'mes', 'Manes.15G036700' => 'mes', 'Manes.15G036900' => 'mes', 'Mapoly0004s0172' => 'mpo', 'Mapoly0023s0001' => 'mpo', 'Mapoly0142s0012' => 'mpo', 'MBI01_g32854_MAGBIO' => 'mbi', 'MBI11_g24427_MAGBIO' => 'mbi', 'MBI11_g47319_MAGBIO' => 'mbi', 'MCO01G433' => 'mco', 'MD00G1187800' => 'mdo', 'MD04G1226500' => 'mdo', 'MD05G1203900' => 'mdo', 'MD10G1191100' => 'mdo', 'MD12G1243500' => 'mdo', 'MD13G1207000' => 'mdo', 'MD13G1207100' => 'mdo', 'MD16G1208600' => 'mdo', 'Medtr1g050352' => 'mtr', 'Medtr1g070385' => 'mtr', 'Medtr1g070450' => 'mtr', 'Medtr1g075200' => 'mtr', 'Medtr1g075250' => 'mtr', 'Medtr1g075260' => 'mtr', 'Medtr1g475250' => 'mtr', 'Medtr4g075450' => 'mtr', 'Medtr7g096300' => 'mtr', 'Medtr8g105110' => 'mtr', 'MELO3C006470.2' => 'cme', 'MELO3C006471.2' => 'cme', 'MELO3C020772.2' => 'cme', 'MELO3C026780.2' => 'cme', 'MELO3C026781.2' => 'cme', 'Migut.D00390' => 'egut', 'Migut.G00435' => 'egut', 'Migut.G00436' => 'egut', 'Migut.G00718' => 'egut', 'MSTRG.21891' => 'ama', 'MSTRG.26910' => 'ama', 'MSTRG.4099' => 'ama', 'MSTRG.9925' => 'ama', 'Nitab4.5_0000165g0010' => 'nta', 'Nitab4.5_0000209g0180' => 'nta', 'Nitab4.5_0000244g0440' => 'nta', 'Nitab4.5_0000525g0220' => 'nta', 'Nitab4.5_0001597g0020' => 'nta', 'Nitab4.5_0001878g0040' => 'nta', 'Nitab4.5_0001878g0060' => 'nta', 'Nitab4.5_0002838g0100' => 'nta', 'Nitab4.5_0002838g0120' => 'nta', 'Nitab4.5_0004798g0030' => 'nta', 'Nitab4.5_0005420g0010' => 'nta', 'Nitab4.5_0005507g0010' => 'nta', 'Nitab4.5_0005574g0020' => 'nta', 'Nitab4.5_0005838g0010' => 'nta', 'Nitab4.5_0010580g0020' => 'nta', 'Nn1g02599' => 'nnu', 'Nn1g02608' => 'nnu', 'Nn3g17742' => 'nnu', 'Nn3g19534' => 'nnu', 'Nn3g19535' => 'nnu', 'Oeu008790.1' => 'oeu', 'Oeu008792.1' => 'oeu', 'Oeu032590.1' => 'oeu', 'Oeu035349.1' => 'oeu', 'Oeu049791.1' => 'oeu', 'Os01g0774500' => 'osa', 'Os03g0628800' => 'osa', 'Os03g0798600' => 'osa', 'Os05g0508800' => 'osa', 'Peaxi162Scf00036g02018' => 'pax', 'Peaxi162Scf00578g00032' => 'pax', 'Peaxi162Scf00578g00317' => 'pax', 'Peaxi162Scf00785g00114' => 'pax', 'Peaxi162Scf00813g00119' => 'pax', 'Peaxi162Scf00906g00227' => 'pax', 'PGR004G0875' => 'pgr', 'PGR004G2424' => 'pgr', 'PGR031G1239' => 'pgr', 'PGR031G2474' => 'pgr', 'PGR044G0423' => 'pgr', 'PGSC0003DMG400001128' => 'stu', 'PGSC0003DMG400007336' => 'stu', 'PGSC0003DMG400016318' => 'stu', 'PGSC0003DMG400016319' => 'stu', 'PGSC0003DMG400018074' => 'stu', 'Phvul.001G157700' => 'pvu', 'Phvul.002G148550' => 'pvu', 'Phvul.002G320200' => 'pvu', 'Phvul.003G089200' => 'pvu', 'Phvul.007G126000' => 'pvu', 'Phvul.007G126100' => 'pvu', 'Phvul.007G178000' => 'pvu', 'Phvul.007G178200' => 'pvu', 'Potri.002G043000' => 'ptr', 'Potri.002G043200' => 'ptr', 'Potri.003G123750' => 'ptr', 'Potri.005G055401' => 'ptr', 'Potri.005G219700' => 'ptr', 'Potri.005G220000' => 'ptr', 'Potri.008G161901' => 'ptr', 'Potri.008G162000' => 'ptr', 'Potri.008G162400' => 'ptr', 'Potri.010G076900' => 'ptr', 'Pp3c12_9180' => 'ppa', 'Pp3c13_19770' => 'ppa', 'Pp3c14_22950' => 'ppa', 'Pp3c16_12160' => 'ppa', 'Pp3c27_7820' => 'ppa', 'Pp3c2_3490' => 'ppa', 'Pp3c3_23700' => 'ppa', 'Pp3c3_36520' => 'ppa', 'Pp3c4_15250' => 'ppa', 'PRCOL_00007002' => 'pco', 'Prupe.1G030600' => 'ppe', 'Prupe.1G030700' => 'ppe', 'Prupe.6G345200' => 'ppe', 'Prupe.8G230300' => 'ppe', 'Prupe.8G230500' => 'ppe', 'Psat3g059600' => 'psa', 'Psat5g200920' => 'psa', 'Psat6g056440' => 'psa', 'Psat6g057360' => 'psa', 'Psat6g134120' => 'psa', 'Psat6g134160' => 'psa', 'Psat7g008640' => 'psa', 'Psat7g185240' => 'psa', 'PSO017G1330' => 'pso', 'PSO063G6097' => 'pso', 'PSO170G0835' => 'pso', 'PSO170G2499' => 'pso', 'PSO210G5058' => 'pso', 'PSO210G6154' => 'pso', 'PSO585G0031' => 'pso', 'PSO832G0264' => 'pso', 'PSO832G4288' => 'pso', 'QL03p027355' => 'qlo', 'QL03p027430' => 'qlo', 'QL04p081380' => 'qlo', 'QL06p015642' => 'qlo', 'QL06p015650' => 'qlo', 'QL06p015686' => 'qlo', 'QL12p042927' => 'qlo', 'QL93p1863_0035' => 'qlo', 'RcHm_v2.0_Chr3g0450581' => 'rch', 'RcHm_v2.0_Chr4g0390371' => 'rch', 'RcHm_v2.0_Chr4g0390381' => 'rch', 'RcHm_v2.0_Chr4g0390491' => 'rch', 'RcHm_v2.0_Chr4g0390501' => 'rch', 'RcHm_v2.0_Chr6g0289231' => 'rch', 'Rhsim04G0190400' => 'rsi', 'Rhsim04G0190500' => 'rsi', 'Rhsim04G0190600' => 'rsi', 'Rhsim13G0031400' => 'rsi', 'Rhsim13G0165600' => 'rsi', 'RhsimUnG0114600' => 'rsi', 'RhsimUnG0114700' => 'rsi', 'Sabra02G0034800' => 'sbr', 'Sabra02G0035100' => 'sbr', 'Sabra05G0168600' => 'sbr', 'Sabra05G0168800' => 'sbr', 'Sabra08G0123700' => 'sbr', 'Sabra10G0031900' => 'sbr', 'Sabra13G0039000' => 'sbr', 'SalBow2G0782' => 'sbo', 'SalBow2G1403' => 'sbo', 'SalBow4G0074' => 'sbo', 'SalBow4G2635' => 'sbo', 'SalBow5G3010' => 'sbo', 'Sc05g0000870' => 'sci', 'Sc05g0000890' => 'sci', 'Sc13g0005000' => 'sci', 'Sc13g0005030' => 'sci', 'Sc19g0003790' => 'sci', 'Sc19g0003800' => 'sci', 'Sed0003467' => 'sed', 'Sed0009355' => 'sed', 'Sed0009894' => 'sed', 'Sed0011972' => 'sed', 'Sed0021483' => 'sed', 'Sed0021750' => 'sed', 'Sed0026279' => 'sed', 'SEGI_05312' => 'sgi', 'SEGI_10112' => 'sgi', 'SEGI_15835' => 'sgi', 'SEGI_30386' => 'sgi', 'SEGI_34122' => 'sgi', 'SEGI_35063' => 'sgi', 'SGA_v2.0_scaffold101G29794' => 'sas', 'SGA_v2.0_scaffold1G00573' => 'sas', 'SGA_v2.0_scaffold79G25637' => 'sas', 'SGA_v2.0_scaffold88G27283' => 'sas', 'SGA_v2.0_scaffold88G27285' => 'sas', 'SGA_v2.0_scaffold88G27331' => 'sas', 'SHI09937' => 'shi', 'SMO119G0302' => 'smo', 'SMO137G0231' => 'smo', 'SMO367G1151' => 'smo', 'Solyc02g082000.3' => 'sly', 'Solyc06g031670.3' => 'sly', 'Solyc06g053810.3' => 'sly', 'Solyc07g025457.1' => 'sly', 'Solyc08g059740.1' => 'sly', 'Solyc08g059750.3' => 'sly', 'Solyc09g083370.3' => 'sly', 'Solyc12g038950.3' => 'sly', 'Sopen02g026630' => 'spe', 'Sopen06g018930' => 'spe', 'Sopen06g018940' => 'spe', 'Sopen08g009460' => 'spe', 'Sopen09g032290' => 'spe', 'Sp1g03080' => 'spa', 'Sp1g03090' => 'spa', 'Sp1g05480' => 'spa', 'Sp2g07860' => 'spa', 'Sp2g08430' => 'spa', 'Sp2g08440' => 'spa', 'Sp2g26200' => 'spa', 'Sp4g13170' => 'spa', 'Sp6g33840' => 'spa', 'SpUn1204_0010' => 'spa', 'TAR365G0908' => 'tar', 'TAR381G1270' => 'tar', 'TAR381G1651' => 'tar', 'TAR625G1131' => 'tar', 'TAR633G0962' => 'tar', 'TAR633G1729' => 'tar', 'TAR633G1864' => 'tar', 'TAR636G0221' => 'tar', 'TAR636G0314' => 'tar', 'TAR636G3202' => 'tar', 'THA.LOC104800805' => 'tha', 'THA.LOC104801096' => 'tha', 'THA.LOC104801555' => 'tha', 'THA.LOC104808491' => 'tha', 'THA.LOC104808595' => 'tha', 'THA.LOC104815985' => 'tha', 'THA.LOC104822250' => 'tha', 'THA.LOC104826071' => 'tha', 'Thecc.01G265200' => 'tca', 'Thecc.01G265300' => 'tca', 'Thecc.01G265700' => 'tca', 'Thecc.03G109100' => 'tca', 'Thecc.04G245900' => 'tca', 'Thecc.04G246000' => 'tca', 'Thhalv10003334m.g' => 'esa', 'Thhalv10005508m.g' => 'esa', 'Thhalv10005643m.g' => 'esa', 'Thhalv10007316m.g' => 'esa', 'Thhalv10009006m.g' => 'esa', 'Thhalv10009309m.g' => 'esa', 'Thhalv10014917m.g' => 'esa', 'Thhalv10014919m.g' => 'esa', 'Thhalv10015393m.g' => 'esa', 'Thhalv10016515m.g' => 'esa', 'Thhalv10029242m.g' => 'esa', 'TPR.G16654' => 'tpr', 'TPR.G20589' => 'tpr', 'TPR.G23029' => 'tpr', 'TPR.G27731' => 'tpr', 'TPR.G28889' => 'tpr', 'TPR.G28899' => 'tpr', 'TPR.G30846' => 'tpr', 'TPR.G5452' => 'tpr', 'TPR.G5713' => 'tpr', 'TPR.G9046' => 'tpr', 'TPR.G9061' => 'tpr', 'TWI09G1075' => 'twi', 'TWI12G0806' => 'twi', 'TWI18G0108' => 'twi', 'TWI53G1361' => 'twi', 'TWI73G0185' => 'twi', 'TWI73G0427' => 'twi', 'unitig_37.g12001' => 'ugi', 'unitig_747.g21660' => 'ugi', 'unitig_748.g7232' => 'ugi', 'unitig_748.g7315' => 'ugi', 'unitig_85.g27262' => 'ugi', 'unitig_92.g28220' => 'ugi', 'vmacro02632' => 'vma', 'vmacro08410' => 'vma', 'vmacro08411' => 'vma', 'vmacro15407' => 'vma', 'VMungo0251G3619' => 'vmu', 'VMungo0720G1204' => 'vmu', 'VMungo0720G1918' => 'vmu', 'VMungo0720G2387' => 'vmu', 'VMungo0720G2961' => 'vmu', 'VMungo1215G2154' => 'vmu', 'VMungo1383G2411' => 'vmu', 'Zm00001eb051130' => 'zma', 'Zm00001eb116830' => 'zma', 'Zm00001eb116850' => 'zma', 'Zm00001eb151740' => 'zma', 'Zm00001eb292360' => 'zma', 'Zm00001eb301640' => 'zma' ), 'gf_id' => 'HOM05D000856', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000856' ), 'data_identifier' => 'HOM05D000856', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000856', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p00010' => 'bna', 'A03p04160' => 'bna', 'A03p17160' => 'bna', 'A04p23370' => 'bna', 'A05p14860' => 'bna', 'A08p37020' => 'bna', 'A09p08050' => 'bna', 'A09p66800' => 'bna', 'A09p67940' => 'bna', 'A10p02680' => 'bna', 'A10p05320' => 'bna', 'Aa31LG1G20560' => 'aar', 'Aa31LG1G20610' => 'aar', 'Aa31LG1G7810' => 'aar', 'Aa31LG5G3590' => 'aar', 'Aa31LG5G6140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3819' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4683' => 'aag', 'Actinidia04480' => 'ach', 'Actinidia05466' => 'ach', 'Actinidia08445' => 'ach', 'Actinidia21170' => 'ach', 'Actinidia24812' => 'ach', 'Actinidia24951' => 'ach', 'Actinidia40088' => 'ach', 'Ah.02g111660' => 'amhyb', 'Ah.11g048900' => 'amhyb', 'Ah.11g049910' => 'amhyb', 'AL1G13870' => 'aly', 'AL1G13880' => 'aly', 'AL1G16760' => 'aly', 'AL390U10020' => 'aly', 'AL4G25520' => 'aly', 'AL6G19890' => 'aly', 'AL6G19900' => 'aly', 'AL6G19910' => 'aly', 'AL8G40100' => 'aly', 'Aqoxy2G03562' => 'aox', 'Aqoxy5G00316' => 'aox', 'Aqoxy5G00926' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1628KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1H403S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2FU6SJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.882I6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8YRY2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YN1SN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AF70II' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZA8L1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F916KL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHRD8H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KTZ8QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S22EMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8M29T' => 'arhy', 'AT1G04270' => 'ath', 'AT1G04280' => 'ath', 'AT1G06750' => 'ath', 'AT1G33850' => 'ath', 'AT2G30630' => 'ath', 'AT5G09490' => 'ath', 'AT5G09500' => 'ath', 'AT5G09510' => 'ath', 'AT5G43640' => 'ath', 'AT5G63070' => 'ath', 'ATR0605G315' => 'atr', 'Atru.chr11.175' => 'acertr', 'Atru.chr11.653' => 'acertr', 'Atru.chr3.1616' => 'acertr', 'Atru.chr4.2230' => 'acertr', 'Atru.chr4.2232' => 'acertr', 'Atru.chr5.1598' => 'acertr', 'Atru.chr5.1600' => 'acertr', 'Atru.chr5.2188' => 'acertr', 'AUR62008326' => 'cqu', 'AUR62011922' => 'cqu', 'AUR62011924' => 'cqu', 'AUR62021771' => 'cqu', 'AUR62032237' => 'cqu', 'AUR62032240' => 'cqu', 'BcaB01g05572' => 'bca', 'BcaB02g10337' => 'bca', 'BcaB04g19944' => 'bca', 'BcaB05g21548' => 'bca', 'BcaB05g21549' => 'bca', 'BcaB05g23227' => 'bca', 'BcaB06g26256' => 'bca', 'BcaB06g26257' => 'bca', 'BcaB06g28379' => 'bca', 'BcaC02g11159' => 'bca', 'BcaC03g13258' => 'bca', 'BcaC03g13259' => 'bca', 'BcaC05g24456' => 'bca', 'BcaC05g24457' => 'bca', 'BcaC07g36922' => 'bca', 'BcaC07g36923' => 'bca', 'BcaC07g42050' => 'bca', 'BcaC07g42176' => 'bca', 'BcaC07g42195' => 'bca', 'BcaC07g42196' => 'bca', 'BcaNung06674' => 'bca', 'BolC2t06351H' => 'bol', 'BolC2t06352H' => 'bol', 'BolC3t12993H' => 'bol', 'BolC4t23525H' => 'bol', 'BolC4t27475H' => 'bol', 'BolC5t29025H' => 'bol', 'BolC5t29026H' => 'bol', 'BolC8t46898H' => 'bol', 'BolC8t46899H' => 'bol', 'BolC8t52630H' => 'bol', 'BolC8t52765H' => 'bol', 'BolC9t53824H' => 'bol', 'BraA03t09760Z' => 'bra', 'BraA03t10990Z' => 'bra', 'BraA05t20413Z' => 'bra', 'BraA08t35602Z' => 'bra', 'BraA09t36458Z' => 'bra', 'BraA09t42018Z' => 'bra', 'BraA09t42129Z' => 'bra', 'BraA10t42536Z' => 'bra', 'BraA10t42537Z' => 'bra', 'C01p10690' => 'bna', 'C02p03890' => 'bna', 'C02p03900' => 'bna', 'C03p04620' => 'bna', 'C04p19870' => 'bna', 'C04p59670' => 'bna', 'C05p02460' => 'bna', 'C05p02470' => 'bna', 'C08p00980' => 'bna', 'C08p00990' => 'bna', 'C08p51030' => 'bna', 'C08p52360' => 'bna', 'C09p09120' => 'bna', 'CAN.G19.15' => 'can', 'CAN.G251.10' => 'can', 'CAN.G251.9' => 'can', 'CAN.G398.24' => 'can', 'CAN.G410.32' => 'can', 'CAN.G881.2' => 'can', 'CANSAT01G3025' => 'cansat', 'CANSAT78G1211' => 'cansat', 'CANSAT78G1218' => 'cansat', 'CANSAT78G1521' => 'cansat', 'CANSAT78G1670' => 'cansat', 'CARHR003600' => 'chi', 'CARHR003610' => 'chi', 'CARHR006290' => 'chi', 'CARHR006430' => 'chi', 'CARHR124110' => 'chi', 'CARHR203870' => 'chi', 'CARHR203880' => 'chi', 'CARHR203890' => 'chi', 'CARHR276880' => 'chi', 'Carub.0001s0346' => 'cru', 'Carub.0001s0347' => 'cru', 'Carub.0001s0607' => 'cru', 'Carub.0003s2768' => 'cru', 'Carub.0003s2769' => 'cru', 'Carub.0004s1178' => 'cru', 'Carub.0006s0806' => 'cru', 'Carub.0006s0807' => 'cru', 'Carub.0006s0808' => 'cru', 'Carub.0008s0501' => 'cru', 'Carub.0008s2379' => 'cru', 'Ca_08655_v3' => 'car', 'Ca_08922_v3' => 'car', 'Ca_08923_v3' => 'car', 'Ca_09119_v3' => 'car', 'Ca_09703_v3' => 'car', 'Ca_09705_v3' => 'car', 'Ca_09835_v3' => 'car', 'Ca_26403_v3' => 'car', 'Ca_30719_v3' => 'car', 'CBR_g17958' => 'cbr', 'CBR_g40516' => 'cbr', 'Cc00_g05350' => 'ccan', 'Cc01_g18690' => 'ccan', 'Cc03_g04830' => 'ccan', 'Cc03_g04850' => 'ccan', 'CDE02G4469' => 'cde', 'CDE06G0883' => 'cde', 'CDE06G1295' => 'cde', 'CDE06G1390' => 'cde', 'CDE07G0584' => 'cde', 'CDE07G1084' => 'cde', 'CDE08G1259' => 'cde', 'Cfa002341' => 'cfa', 'Cfa024337' => 'cfa', 'Ciclev10004749m.g' => 'ccl', 'Ciclev10006127m.g' => 'ccl', 'Ciclev10019720m.g' => 'ccl', 'Ciclev10022652m.g' => 'ccl', 'CiPaw.01G190400' => 'cil', 'CiPaw.01G190500' => 'cil', 'CiPaw.02G116400' => 'cil', 'CiPaw.02G116500' => 'cil', 'CiPaw.04G183000' => 'cil', 'CiPaw.04G183300' => 'cil', 'ClCG05G004610' => 'cla', 'ClCG05G004620' => 'cla', 'ClCG06G006730' => 'cla', 'ClCG06G006740' => 'cla', 'ClCG11G003690' => 'cla', 'COL.COLO4_08276' => 'col', 'COL.COLO4_08277' => 'col', 'COL.COLO4_15787' => 'col', 'COL.COLO4_15789' => 'col', 'Cpa.g.c44815' => 'cpa', 'Cpa.g.sc52.144' => 'cpa', 'Cpa.g.sc58.46' => 'cpa', 'Cpa.g.sc58.47' => 'cpa', 'Cre08.g360900' => 'cre', 'CsaV3_2G013030' => 'csa', 'CsaV3_2G013050' => 'csa', 'CsaV3_2G015620' => 'csa', 'CsaV3_3G012590' => 'csa', 'CsaV3_3G012600' => 'csa', 'CSS0001641' => 'camsi', 'CSS0008310' => 'camsi', 'CSS0013011' => 'camsi', 'CSS0017147' => 'camsi', 'CSS0022970' => 'camsi', 'CSS0025655' => 'camsi', 'CSS0028665' => 'camsi', 'CSS0029117' => 'camsi', 'CSS0032024' => 'camsi', 'CSS0039681' => 'camsi', 'CSS0046516' => 'camsi', 'CSS0050307' => 'camsi', 'DCAR_005871' => 'dca', 'DCAR_007342' => 'dca', 'DCAR_024228' => 'dca', 'DCAR_027277' => 'dca', 'DCAR_030718' => 'dca', 'Dinv20287' => 'din', 'Dinv22461' => 'din', 'Dinv22464' => 'din', 'Dinv29912' => 'din', 'Dinv29913' => 'din', 'Dinv34580' => 'din', 'Dinv34582' => 'din', 'Dinv44632' => 'din', 'Duzib052G0266' => 'dzi', 'Duzib133G0907' => 'dzi', 'Duzib133G1034' => 'dzi', 'Duzib138G0207' => 'dzi', 'Duzib138G0491' => 'dzi', 'Duzib151G0812' => 'dzi', 'Duzib151G1166' => 'dzi', 'Duzib168G0192' => 'dzi', 'Duzib211G0077' => 'dzi', 'Duzib212G0429' => 'dzi', 'Duzib212G0472' => 'dzi', 'ECA233G2617' => 'eca', 'ECA236G4188' => 'eca', 'ECA240G0936' => 'eca', 'ECA240G1129' => 'eca', 'ECA247G0623' => 'eca', 'EL10Ac5g10451' => 'bvu', 'EL10Ac5g10453' => 'bvu', 'EL10Ac5g10894' => 'bvu', 'Eucgr.H00192' => 'egr', 'Eucgr.H00193' => 'egr', 'Eucgr.H00194' => 'egr', 'Eucgr.J01562' => 'egr', 'Eucgr.K03301' => 'egr', 'FAN02G0632' => 'fan', 'FAN05G5378' => 'fan', 'FAN09G3247' => 'fan', 'FAN12G0435' => 'fan', 'FAN12G2426' => 'fan', 'FAN14G1707' => 'fan', 'FAN14G4725' => 'fan', 'FAN15G2071' => 'fan', 'FAN17G3065' => 'fan', 'FAN19G1376' => 'fan', 'FAN20G0354' => 'fan', 'FAN20G2429' => 'fan', 'FAN20G2658' => 'fan', 'FAN24G2343' => 'fan', 'FAN27G2362' => 'fan', 'FAN28G1765' => 'fan', 'FvH4_1g16020' => 'fve', 'FvH4_2g04890' => 'fve', 'FvH4_2g22270' => 'fve', 'FvH4_4g02630' => 'fve', 'FvH4_4g02640' => 'fve', 'FvH4_6g02650' => 'fve', 'Glyma.02G140600' => 'gma', 'Glyma.03G159900' => 'gma', 'Glyma.05G234800' => 'gma', 'Glyma.07G269600' => 'gma', 'Glyma.08G042300' => 'gma', 'Glyma.10G033500' => 'gma', 'Glyma.10G185200' => 'gma', 'Glyma.17G004300' => 'gma', 'Glyma.19G161900' => 'gma', 'Glyma.20G205100' => 'gma', 'Glyma.20G205200' => 'gma', 'Gohir.A01G139101' => 'ghi', 'Gohir.A02G035600' => 'ghi', 'Gohir.A02G117901' => 'ghi', 'Gohir.A07G210100' => 'ghi', 'Gohir.A07G210200' => 'ghi', 'Gohir.A08G061100' => 'ghi', 'Gohir.A09G223000' => 'ghi', 'Gohir.A09G223100' => 'ghi', 'Gohir.A10G113900' => 'ghi', 'Gohir.A10G114000' => 'ghi', 'Gohir.D02G042300' => 'ghi', 'Gohir.D07G216100' => 'ghi', 'Gohir.D07G216200' => 'ghi', 'Gohir.D08G070400' => 'ghi', 'Gohir.D09G225000' => 'ghi', 'Gohir.D09G225100' => 'ghi', 'Gohir.D10G152300' => 'ghi', 'Gohir.D10G153200' => 'ghi', 'Gohir.D11G133701' => 'ghi', 'Gorai.004G074100' => 'gra', 'Gorai.005G046800' => 'gra', 'Gorai.006G246500' => 'gra', 'Gorai.006G246600' => 'gra', 'Gorai.007G142900' => 'gra', 'Gorai.011G171000' => 'gra', 'Gorai.011G171100' => 'gra', 'Gorai.013G104300' => 'gra', 'Gorai.013G104400' => 'gra', 'GSVIVG01000754001' => 'vvi', 'GSVIVG01000756001' => 'vvi', 'GSVIVG01010903001' => 'vvi', 'GSVIVG01017623001' => 'vvi', 'GSVIVG01018113001' => 'vvi', 'GSVIVG01018116001' => 'vvi', 'GSVIVG01018118001' => 'vvi', 'HanXRQChr03g0076211' => 'han', 'HanXRQChr03g0092431' => 'han', 'HanXRQChr03g0092441' => 'han', 'HanXRQChr03g0092591' => 'han', 'HanXRQChr03g0092671' => 'han', 'HanXRQChr03g0092681' => 'han', 'HanXRQChr03g0092691' => 'han', 'HanXRQChr03g0092701' => 'han', 'HanXRQChr03g0092721' => 'han', 'HanXRQChr03g0092731' => 'han', 'HanXRQChr04g0113681' => 'han', 'HanXRQChr10g0281371' => 'han', 'HanXRQChr11g0337141' => 'han', 'HanXRQChr13g0424521' => 'han', 'HanXRQChr13g0424531' => 'han', 'HanXRQChr13g0424541' => 'han', 'HanXRQChr16g0498221' => 'han', 'Haze_04377' => 'cav', 'Haze_11298' => 'cav', 'Haze_24547' => 'cav', 'Haze_24550' => 'cav', 'Haze_26587' => 'cav', 'Hma1.2p1_0650F.1_g195410' => 'hma', 'Hma1.2p1_0893F.1_g233470' => 'hma', 'HPP92_006508' => 'vpl', 'HPP92_024780' => 'vpl', 'Hund02688' => 'sun', 'Hund09380' => 'sun', 'Hund09381' => 'sun', 'Hund09832' => 'sun', 'Hund09833' => 'sun', 'Hund11351' => 'sun', 'Hund11513' => 'sun', 'Lalb_Chr06g0162591' => 'lal', 'Lalb_Chr06g0162601' => 'lal', 'Lalb_Chr06g0169321' => 'lal', 'Lalb_Chr09g0330951' => 'lal', 'Lalb_Chr16g0387631' => 'lal', 'Lalb_Chr21g0306241' => 'lal', 'Lalb_Chr25g0290051' => 'lal', 'Lalb_Chr25g0290061' => 'lal', 'Lalb_Chr25g0290071' => 'lal', 'Lj1g0003876' => 'lja', 'Lj1P1207T36' => 'lonja', 'Lj2C1156G12' => 'lonja', 'Lj3A793G39' => 'lonja', 'Lj3C580G2' => 'lonja', 'Lj3C780G2' => 'lonja', 'Lj3C780T4' => 'lonja', 'Lj3C793G9' => 'lonja', 'Lj4g0012960' => 'lja', 'Lj5g0021252' => 'lja', 'Lj5g0021484' => 'lja', 'Lj5g0024528' => 'lja', 'Lj6A399T12' => 'lonja', 'Lj6A656G65' => 'lonja', 'Lsat_1_v5_gn_3_125500' => 'lsa', 'Lsat_1_v5_gn_3_125540' => 'lsa', 'Lsat_1_v5_gn_5_72701' => 'lsa', 'Lsat_1_v5_gn_8_91560' => 'lsa', 'Lsat_1_v5_gn_9_9640' => 'lsa', 'Manes.01G200600' => 'mes', 'Manes.01G200700' => 'mes', 'Manes.03G168900' => 'mes', 'Manes.03G169000' => 'mes', 'Manes.05G085801' => 'mes', 'Manes.05G086200' => 'mes', 'Manes.15G036700' => 'mes', 'Manes.15G036900' => 'mes', 'Mapoly0004s0172' => 'mpo', 'Mapoly0023s0001' => 'mpo', 'Mapoly0142s0012' => 'mpo', 'MBI01_g32854_MAGBIO' => 'mbi', 'MBI11_g24427_MAGBIO' => 'mbi', 'MBI11_g47319_MAGBIO' => 'mbi', 'MCO01G433' => 'mco', 'MD00G1187800' => 'mdo', 'MD04G1226500' => 'mdo', 'MD05G1203900' => 'mdo', 'MD10G1191100' => 'mdo', 'MD12G1243500' => 'mdo', 'MD13G1207000' => 'mdo', 'MD13G1207100' => 'mdo', 'MD16G1208600' => 'mdo', 'Medtr1g050352' => 'mtr', 'Medtr1g070385' => 'mtr', 'Medtr1g070450' => 'mtr', 'Medtr1g075200' => 'mtr', 'Medtr1g075250' => 'mtr', 'Medtr1g075260' => 'mtr', 'Medtr1g475250' => 'mtr', 'Medtr4g075450' => 'mtr', 'Medtr7g096300' => 'mtr', 'Medtr8g105110' => 'mtr', 'MELO3C006470.2' => 'cme', 'MELO3C006471.2' => 'cme', 'MELO3C020772.2' => 'cme', 'MELO3C026780.2' => 'cme', 'MELO3C026781.2' => 'cme', 'Migut.D00390' => 'egut', 'Migut.G00435' => 'egut', 'Migut.G00436' => 'egut', 'Migut.G00718' => 'egut', 'MSTRG.21891' => 'ama', 'MSTRG.26910' => 'ama', 'MSTRG.4099' => 'ama', 'MSTRG.9925' => 'ama', 'Nitab4.5_0000165g0010' => 'nta', 'Nitab4.5_0000209g0180' => 'nta', 'Nitab4.5_0000244g0440' => 'nta', 'Nitab4.5_0000525g0220' => 'nta', 'Nitab4.5_0001597g0020' => 'nta', 'Nitab4.5_0001878g0040' => 'nta', 'Nitab4.5_0001878g0060' => 'nta', 'Nitab4.5_0002838g0100' => 'nta', 'Nitab4.5_0002838g0120' => 'nta', 'Nitab4.5_0004798g0030' => 'nta', 'Nitab4.5_0005420g0010' => 'nta', 'Nitab4.5_0005507g0010' => 'nta', 'Nitab4.5_0005574g0020' => 'nta', 'Nitab4.5_0005838g0010' => 'nta', 'Nitab4.5_0010580g0020' => 'nta', 'Nn1g02599' => 'nnu', 'Nn1g02608' => 'nnu', 'Nn3g17742' => 'nnu', 'Nn3g19534' => 'nnu', 'Nn3g19535' => 'nnu', 'Oeu008790.1' => 'oeu', 'Oeu008792.1' => 'oeu', 'Oeu032590.1' => 'oeu', 'Oeu035349.1' => 'oeu', 'Oeu049791.1' => 'oeu', 'Os01g0774500' => 'osa', 'Os03g0628800' => 'osa', 'Os03g0798600' => 'osa', 'Os05g0508800' => 'osa', 'Peaxi162Scf00036g02018' => 'pax', 'Peaxi162Scf00578g00032' => 'pax', 'Peaxi162Scf00578g00317' => 'pax', 'Peaxi162Scf00785g00114' => 'pax', 'Peaxi162Scf00813g00119' => 'pax', 'Peaxi162Scf00906g00227' => 'pax', 'PGR004G0875' => 'pgr', 'PGR004G2424' => 'pgr', 'PGR031G1239' => 'pgr', 'PGR031G2474' => 'pgr', 'PGR044G0423' => 'pgr', 'PGSC0003DMG400001128' => 'stu', 'PGSC0003DMG400007336' => 'stu', 'PGSC0003DMG400016318' => 'stu', 'PGSC0003DMG400016319' => 'stu', 'PGSC0003DMG400018074' => 'stu', 'Phvul.001G157700' => 'pvu', 'Phvul.002G148550' => 'pvu', 'Phvul.002G320200' => 'pvu', 'Phvul.003G089200' => 'pvu', 'Phvul.007G126000' => 'pvu', 'Phvul.007G126100' => 'pvu', 'Phvul.007G178000' => 'pvu', 'Phvul.007G178200' => 'pvu', 'Potri.002G043000' => 'ptr', 'Potri.002G043200' => 'ptr', 'Potri.003G123750' => 'ptr', 'Potri.005G055401' => 'ptr', 'Potri.005G219700' => 'ptr', 'Potri.005G220000' => 'ptr', 'Potri.008G161901' => 'ptr', 'Potri.008G162000' => 'ptr', 'Potri.008G162400' => 'ptr', 'Potri.010G076900' => 'ptr', 'Pp3c12_9180' => 'ppa', 'Pp3c13_19770' => 'ppa', 'Pp3c14_22950' => 'ppa', 'Pp3c16_12160' => 'ppa', 'Pp3c27_7820' => 'ppa', 'Pp3c2_3490' => 'ppa', 'Pp3c3_23700' => 'ppa', 'Pp3c3_36520' => 'ppa', 'Pp3c4_15250' => 'ppa', 'PRCOL_00007002' => 'pco', 'Prupe.1G030600' => 'ppe', 'Prupe.1G030700' => 'ppe', 'Prupe.6G345200' => 'ppe', 'Prupe.8G230300' => 'ppe', 'Prupe.8G230500' => 'ppe', 'Psat3g059600' => 'psa', 'Psat5g200920' => 'psa', 'Psat6g056440' => 'psa', 'Psat6g057360' => 'psa', 'Psat6g134120' => 'psa', 'Psat6g134160' => 'psa', 'Psat7g008640' => 'psa', 'Psat7g185240' => 'psa', 'PSO017G1330' => 'pso', 'PSO063G6097' => 'pso', 'PSO170G0835' => 'pso', 'PSO170G2499' => 'pso', 'PSO210G5058' => 'pso', 'PSO210G6154' => 'pso', 'PSO585G0031' => 'pso', 'PSO832G0264' => 'pso', 'PSO832G4288' => 'pso', 'QL03p027355' => 'qlo', 'QL03p027430' => 'qlo', 'QL04p081380' => 'qlo', 'QL06p015642' => 'qlo', 'QL06p015650' => 'qlo', 'QL06p015686' => 'qlo', 'QL12p042927' => 'qlo', 'QL93p1863_0035' => 'qlo', 'RcHm_v2.0_Chr3g0450581' => 'rch', 'RcHm_v2.0_Chr4g0390371' => 'rch', 'RcHm_v2.0_Chr4g0390381' => 'rch', 'RcHm_v2.0_Chr4g0390491' => 'rch', 'RcHm_v2.0_Chr4g0390501' => 'rch', 'RcHm_v2.0_Chr6g0289231' => 'rch', 'Rhsim04G0190400' => 'rsi', 'Rhsim04G0190500' => 'rsi', 'Rhsim04G0190600' => 'rsi', 'Rhsim13G0031400' => 'rsi', 'Rhsim13G0165600' => 'rsi', 'RhsimUnG0114600' => 'rsi', 'RhsimUnG0114700' => 'rsi', 'Sabra02G0034800' => 'sbr', 'Sabra02G0035100' => 'sbr', 'Sabra05G0168600' => 'sbr', 'Sabra05G0168800' => 'sbr', 'Sabra08G0123700' => 'sbr', 'Sabra10G0031900' => 'sbr', 'Sabra13G0039000' => 'sbr', 'SalBow2G0782' => 'sbo', 'SalBow2G1403' => 'sbo', 'SalBow4G0074' => 'sbo', 'SalBow4G2635' => 'sbo', 'SalBow5G3010' => 'sbo', 'Sc05g0000870' => 'sci', 'Sc05g0000890' => 'sci', 'Sc13g0005000' => 'sci', 'Sc13g0005030' => 'sci', 'Sc19g0003790' => 'sci', 'Sc19g0003800' => 'sci', 'Sed0003467' => 'sed', 'Sed0009355' => 'sed', 'Sed0009894' => 'sed', 'Sed0011972' => 'sed', 'Sed0021483' => 'sed', 'Sed0021750' => 'sed', 'Sed0026279' => 'sed', 'SEGI_05312' => 'sgi', 'SEGI_10112' => 'sgi', 'SEGI_15835' => 'sgi', 'SEGI_30386' => 'sgi', 'SEGI_34122' => 'sgi', 'SEGI_35063' => 'sgi', 'SGA_v2.0_scaffold101G29794' => 'sas', 'SGA_v2.0_scaffold1G00573' => 'sas', 'SGA_v2.0_scaffold79G25637' => 'sas', 'SGA_v2.0_scaffold88G27283' => 'sas', 'SGA_v2.0_scaffold88G27285' => 'sas', 'SGA_v2.0_scaffold88G27331' => 'sas', 'SHI09937' => 'shi', 'SMO119G0302' => 'smo', 'SMO137G0231' => 'smo', 'SMO367G1151' => 'smo', 'Solyc02g082000.3' => 'sly', 'Solyc06g031670.3' => 'sly', 'Solyc06g053810.3' => 'sly', 'Solyc07g025457.1' => 'sly', 'Solyc08g059740.1' => 'sly', 'Solyc08g059750.3' => 'sly', 'Solyc09g083370.3' => 'sly', 'Solyc12g038950.3' => 'sly', 'Sopen02g026630' => 'spe', 'Sopen06g018930' => 'spe', 'Sopen06g018940' => 'spe', 'Sopen08g009460' => 'spe', 'Sopen09g032290' => 'spe', 'Sp1g03080' => 'spa', 'Sp1g03090' => 'spa', 'Sp1g05480' => 'spa', 'Sp2g07860' => 'spa', 'Sp2g08430' => 'spa', 'Sp2g08440' => 'spa', 'Sp2g26200' => 'spa', 'Sp4g13170' => 'spa', 'Sp6g33840' => 'spa', 'SpUn1204_0010' => 'spa', 'TAR365G0908' => 'tar', 'TAR381G1270' => 'tar', 'TAR381G1651' => 'tar', 'TAR625G1131' => 'tar', 'TAR633G0962' => 'tar', 'TAR633G1729' => 'tar', 'TAR633G1864' => 'tar', 'TAR636G0221' => 'tar', 'TAR636G0314' => 'tar', 'TAR636G3202' => 'tar', 'THA.LOC104800805' => 'tha', 'THA.LOC104801096' => 'tha', 'THA.LOC104801555' => 'tha', 'THA.LOC104808491' => 'tha', 'THA.LOC104808595' => 'tha', 'THA.LOC104815985' => 'tha', 'THA.LOC104822250' => 'tha', 'THA.LOC104826071' => 'tha', 'Thecc.01G265200' => 'tca', 'Thecc.01G265300' => 'tca', 'Thecc.01G265700' => 'tca', 'Thecc.03G109100' => 'tca', 'Thecc.04G245900' => 'tca', 'Thecc.04G246000' => 'tca', 'Thhalv10003334m.g' => 'esa', 'Thhalv10005508m.g' => 'esa', 'Thhalv10005643m.g' => 'esa', 'Thhalv10007316m.g' => 'esa', 'Thhalv10009006m.g' => 'esa', 'Thhalv10009309m.g' => 'esa', 'Thhalv10014917m.g' => 'esa', 'Thhalv10014919m.g' => 'esa', 'Thhalv10015393m.g' => 'esa', 'Thhalv10016515m.g' => 'esa', 'Thhalv10029242m.g' => 'esa', 'TPR.G16654' => 'tpr', 'TPR.G20589' => 'tpr', 'TPR.G23029' => 'tpr', 'TPR.G27731' => 'tpr', 'TPR.G28889' => 'tpr', 'TPR.G28899' => 'tpr', 'TPR.G30846' => 'tpr', 'TPR.G5452' => 'tpr', 'TPR.G5713' => 'tpr', 'TPR.G9046' => 'tpr', 'TPR.G9061' => 'tpr', 'TWI09G1075' => 'twi', 'TWI12G0806' => 'twi', 'TWI18G0108' => 'twi', 'TWI53G1361' => 'twi', 'TWI73G0185' => 'twi', 'TWI73G0427' => 'twi', 'unitig_37.g12001' => 'ugi', 'unitig_747.g21660' => 'ugi', 'unitig_748.g7232' => 'ugi', 'unitig_748.g7315' => 'ugi', 'unitig_85.g27262' => 'ugi', 'unitig_92.g28220' => 'ugi', 'vmacro02632' => 'vma', 'vmacro08410' => 'vma', 'vmacro08411' => 'vma', 'vmacro15407' => 'vma', 'VMungo0251G3619' => 'vmu', 'VMungo0720G1204' => 'vmu', 'VMungo0720G1918' => 'vmu', 'VMungo0720G2387' => 'vmu', 'VMungo0720G2961' => 'vmu', 'VMungo1215G2154' => 'vmu', 'VMungo1383G2411' => 'vmu', 'Zm00001eb051130' => 'zma', 'Zm00001eb116830' => 'zma', 'Zm00001eb116850' => 'zma', 'Zm00001eb151740' => 'zma', 'Zm00001eb292360' => 'zma', 'Zm00001eb301640' => 'zma' ) $gf_id = 'HOM05D000856' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000856' ) $data_identifier = 'HOM05D000856' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 13, 'ath' => (int) 10, 'atr' => (int) 1, 'acertr' => (int) 8, 'cqu' => (int) 6, 'bca' => (int) 21, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 11, 'car' => (int) 9, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 8, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 5, 'fan' => (int) 16, 'fve' => (int) 6, 'gma' => (int) 11, 'ghi' => (int) 19, 'gra' => (int) 9, 'vvi' => (int) 7, 'han' => (int) 17, 'cav' => (int) 5, 'hma' => (int) 2, 'vpl' => (int) 2, 'sun' => (int) 7, 'lal' => (int) 9, 'lja' => (int) 5, 'lonja' => (int) 9, 'lsa' => (int) 5, 'mes' => (int) 8, 'mpo' => (int) 3, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 10, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 15, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 9, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 9, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 6, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 5, 'spa' => (int) 10, 'tar' => (int) 10, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 11, 'tpr' => (int) 11, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 4, 'vmu' => (int) 7, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb301640' $species_info = array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ) $local_species = 'lja' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000856', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p00010' => 'bna', 'A03p04160' => 'bna', 'A03p17160' => 'bna', 'A04p23370' => 'bna', 'A05p14860' => 'bna', 'A08p37020' => 'bna', 'A09p08050' => 'bna', 'A09p66800' => 'bna', 'A09p67940' => 'bna', 'A10p02680' => 'bna', 'A10p05320' => 'bna', 'Aa31LG1G20560' => 'aar', 'Aa31LG1G20610' => 'aar', 'Aa31LG1G7810' => 'aar', 'Aa31LG5G3590' => 'aar', 'Aa31LG5G6140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3819' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4683' => 'aag', 'Actinidia04480' => 'ach', 'Actinidia05466' => 'ach', 'Actinidia08445' => 'ach', 'Actinidia21170' => 'ach', 'Actinidia24812' => 'ach', 'Actinidia24951' => 'ach', 'Actinidia40088' => 'ach', 'Ah.02g111660' => 'amhyb', 'Ah.11g048900' => 'amhyb', 'Ah.11g049910' => 'amhyb', 'AL1G13870' => 'aly', 'AL1G13880' => 'aly', 'AL1G16760' => 'aly', 'AL390U10020' => 'aly', 'AL4G25520' => 'aly', 'AL6G19890' => 'aly', 'AL6G19900' => 'aly', 'AL6G19910' => 'aly', 'AL8G40100' => 'aly', 'Aqoxy2G03562' => 'aox', 'Aqoxy5G00316' => 'aox', 'Aqoxy5G00926' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1628KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1H403S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2FU6SJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.882I6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8YRY2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YN1SN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AF70II' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZA8L1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F916KL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHRD8H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KTZ8QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S22EMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8M29T' => 'arhy', 'AT1G04270' => 'ath', 'AT1G04280' => 'ath', 'AT1G06750' => 'ath', 'AT1G33850' => 'ath', 'AT2G30630' => 'ath', 'AT5G09490' => 'ath', 'AT5G09500' => 'ath', 'AT5G09510' => 'ath', 'AT5G43640' => 'ath', 'AT5G63070' => 'ath', 'ATR0605G315' => 'atr', 'Atru.chr11.175' => 'acertr', 'Atru.chr11.653' => 'acertr', 'Atru.chr3.1616' => 'acertr', 'Atru.chr4.2230' => 'acertr', 'Atru.chr4.2232' => 'acertr', 'Atru.chr5.1598' => 'acertr', 'Atru.chr5.1600' => 'acertr', 'Atru.chr5.2188' => 'acertr', 'AUR62008326' => 'cqu', 'AUR62011922' => 'cqu', 'AUR62011924' => 'cqu', 'AUR62021771' => 'cqu', 'AUR62032237' => 'cqu', 'AUR62032240' => 'cqu', 'BcaB01g05572' => 'bca', 'BcaB02g10337' => 'bca', 'BcaB04g19944' => 'bca', 'BcaB05g21548' => 'bca', 'BcaB05g21549' => 'bca', 'BcaB05g23227' => 'bca', 'BcaB06g26256' => 'bca', 'BcaB06g26257' => 'bca', 'BcaB06g28379' => 'bca', 'BcaC02g11159' => 'bca', 'BcaC03g13258' => 'bca', 'BcaC03g13259' => 'bca', 'BcaC05g24456' => 'bca', 'BcaC05g24457' => 'bca', 'BcaC07g36922' => 'bca', 'BcaC07g36923' => 'bca', 'BcaC07g42050' => 'bca', 'BcaC07g42176' => 'bca', 'BcaC07g42195' => 'bca', 'BcaC07g42196' => 'bca', 'BcaNung06674' => 'bca', 'BolC2t06351H' => 'bol', 'BolC2t06352H' => 'bol', 'BolC3t12993H' => 'bol', 'BolC4t23525H' => 'bol', 'BolC4t27475H' => 'bol', 'BolC5t29025H' => 'bol', 'BolC5t29026H' => 'bol', 'BolC8t46898H' => 'bol', 'BolC8t46899H' => 'bol', 'BolC8t52630H' => 'bol', 'BolC8t52765H' => 'bol', 'BolC9t53824H' => 'bol', 'BraA03t09760Z' => 'bra', 'BraA03t10990Z' => 'bra', 'BraA05t20413Z' => 'bra', 'BraA08t35602Z' => 'bra', 'BraA09t36458Z' => 'bra', 'BraA09t42018Z' => 'bra', 'BraA09t42129Z' => 'bra', 'BraA10t42536Z' => 'bra', 'BraA10t42537Z' => 'bra', 'C01p10690' => 'bna', 'C02p03890' => 'bna', 'C02p03900' => 'bna', 'C03p04620' => 'bna', 'C04p19870' => 'bna', 'C04p59670' => 'bna', 'C05p02460' => 'bna', 'C05p02470' => 'bna', 'C08p00980' => 'bna', 'C08p00990' => 'bna', 'C08p51030' => 'bna', 'C08p52360' => 'bna', 'C09p09120' => 'bna', 'CAN.G19.15' => 'can', 'CAN.G251.10' => 'can', 'CAN.G251.9' => 'can', 'CAN.G398.24' => 'can', 'CAN.G410.32' => 'can', 'CAN.G881.2' => 'can', 'CANSAT01G3025' => 'cansat', 'CANSAT78G1211' => 'cansat', 'CANSAT78G1218' => 'cansat', 'CANSAT78G1521' => 'cansat', 'CANSAT78G1670' => 'cansat', 'CARHR003600' => 'chi', 'CARHR003610' => 'chi', 'CARHR006290' => 'chi', 'CARHR006430' => 'chi', 'CARHR124110' => 'chi', 'CARHR203870' => 'chi', 'CARHR203880' => 'chi', 'CARHR203890' => 'chi', 'CARHR276880' => 'chi', 'Carub.0001s0346' => 'cru', 'Carub.0001s0347' => 'cru', 'Carub.0001s0607' => 'cru', 'Carub.0003s2768' => 'cru', 'Carub.0003s2769' => 'cru', 'Carub.0004s1178' => 'cru', 'Carub.0006s0806' => 'cru', 'Carub.0006s0807' => 'cru', 'Carub.0006s0808' => 'cru', 'Carub.0008s0501' => 'cru', 'Carub.0008s2379' => 'cru', 'Ca_08655_v3' => 'car', 'Ca_08922_v3' => 'car', 'Ca_08923_v3' => 'car', 'Ca_09119_v3' => 'car', 'Ca_09703_v3' => 'car', 'Ca_09705_v3' => 'car', 'Ca_09835_v3' => 'car', 'Ca_26403_v3' => 'car', 'Ca_30719_v3' => 'car', 'CBR_g17958' => 'cbr', 'CBR_g40516' => 'cbr', 'Cc00_g05350' => 'ccan', 'Cc01_g18690' => 'ccan', 'Cc03_g04830' => 'ccan', 'Cc03_g04850' => 'ccan', 'CDE02G4469' => 'cde', 'CDE06G0883' => 'cde', 'CDE06G1295' => 'cde', 'CDE06G1390' => 'cde', 'CDE07G0584' => 'cde', 'CDE07G1084' => 'cde', 'CDE08G1259' => 'cde', 'Cfa002341' => 'cfa', 'Cfa024337' => 'cfa', 'Ciclev10004749m.g' => 'ccl', 'Ciclev10006127m.g' => 'ccl', 'Ciclev10019720m.g' => 'ccl', 'Ciclev10022652m.g' => 'ccl', 'CiPaw.01G190400' => 'cil', 'CiPaw.01G190500' => 'cil', 'CiPaw.02G116400' => 'cil', 'CiPaw.02G116500' => 'cil', 'CiPaw.04G183000' => 'cil', 'CiPaw.04G183300' => 'cil', 'ClCG05G004610' => 'cla', 'ClCG05G004620' => 'cla', 'ClCG06G006730' => 'cla', 'ClCG06G006740' => 'cla', 'ClCG11G003690' => 'cla', 'COL.COLO4_08276' => 'col', 'COL.COLO4_08277' => 'col', 'COL.COLO4_15787' => 'col', 'COL.COLO4_15789' => 'col', 'Cpa.g.c44815' => 'cpa', 'Cpa.g.sc52.144' => 'cpa', 'Cpa.g.sc58.46' => 'cpa', 'Cpa.g.sc58.47' => 'cpa', 'Cre08.g360900' => 'cre', 'CsaV3_2G013030' => 'csa', 'CsaV3_2G013050' => 'csa', 'CsaV3_2G015620' => 'csa', 'CsaV3_3G012590' => 'csa', 'CsaV3_3G012600' => 'csa', 'CSS0001641' => 'camsi', 'CSS0008310' => 'camsi', 'CSS0013011' => 'camsi', 'CSS0017147' => 'camsi', 'CSS0022970' => 'camsi', 'CSS0025655' => 'camsi', 'CSS0028665' => 'camsi', 'CSS0029117' => 'camsi', 'CSS0032024' => 'camsi', 'CSS0039681' => 'camsi', 'CSS0046516' => 'camsi', 'CSS0050307' => 'camsi', 'DCAR_005871' => 'dca', 'DCAR_007342' => 'dca', 'DCAR_024228' => 'dca', 'DCAR_027277' => 'dca', 'DCAR_030718' => 'dca', 'Dinv20287' => 'din', 'Dinv22461' => 'din', 'Dinv22464' => 'din', 'Dinv29912' => 'din', 'Dinv29913' => 'din', 'Dinv34580' => 'din', 'Dinv34582' => 'din', 'Dinv44632' => 'din', 'Duzib052G0266' => 'dzi', 'Duzib133G0907' => 'dzi', 'Duzib133G1034' => 'dzi', 'Duzib138G0207' => 'dzi', 'Duzib138G0491' => 'dzi', 'Duzib151G0812' => 'dzi', 'Duzib151G1166' => 'dzi', 'Duzib168G0192' => 'dzi', 'Duzib211G0077' => 'dzi', 'Duzib212G0429' => 'dzi', 'Duzib212G0472' => 'dzi', 'ECA233G2617' => 'eca', 'ECA236G4188' => 'eca', 'ECA240G0936' => 'eca', 'ECA240G1129' => 'eca', 'ECA247G0623' => 'eca', 'EL10Ac5g10451' => 'bvu', 'EL10Ac5g10453' => 'bvu', 'EL10Ac5g10894' => 'bvu', 'Eucgr.H00192' => 'egr', 'Eucgr.H00193' => 'egr', 'Eucgr.H00194' => 'egr', 'Eucgr.J01562' => 'egr', 'Eucgr.K03301' => 'egr', 'FAN02G0632' => 'fan', 'FAN05G5378' => 'fan', 'FAN09G3247' => 'fan', 'FAN12G0435' => 'fan', 'FAN12G2426' => 'fan', 'FAN14G1707' => 'fan', 'FAN14G4725' => 'fan', 'FAN15G2071' => 'fan', 'FAN17G3065' => 'fan', 'FAN19G1376' => 'fan', 'FAN20G0354' => 'fan', 'FAN20G2429' => 'fan', 'FAN20G2658' => 'fan', 'FAN24G2343' => 'fan', 'FAN27G2362' => 'fan', 'FAN28G1765' => 'fan', 'FvH4_1g16020' => 'fve', 'FvH4_2g04890' => 'fve', 'FvH4_2g22270' => 'fve', 'FvH4_4g02630' => 'fve', 'FvH4_4g02640' => 'fve', 'FvH4_6g02650' => 'fve', 'Glyma.02G140600' => 'gma', 'Glyma.03G159900' => 'gma', 'Glyma.05G234800' => 'gma', 'Glyma.07G269600' => 'gma', 'Glyma.08G042300' => 'gma', 'Glyma.10G033500' => 'gma', 'Glyma.10G185200' => 'gma', 'Glyma.17G004300' => 'gma', 'Glyma.19G161900' => 'gma', 'Glyma.20G205100' => 'gma', 'Glyma.20G205200' => 'gma', 'Gohir.A01G139101' => 'ghi', 'Gohir.A02G035600' => 'ghi', 'Gohir.A02G117901' => 'ghi', 'Gohir.A07G210100' => 'ghi', 'Gohir.A07G210200' => 'ghi', 'Gohir.A08G061100' => 'ghi', 'Gohir.A09G223000' => 'ghi', 'Gohir.A09G223100' => 'ghi', 'Gohir.A10G113900' => 'ghi', 'Gohir.A10G114000' => 'ghi', 'Gohir.D02G042300' => 'ghi', 'Gohir.D07G216100' => 'ghi', 'Gohir.D07G216200' => 'ghi', 'Gohir.D08G070400' => 'ghi', 'Gohir.D09G225000' => 'ghi', 'Gohir.D09G225100' => 'ghi', 'Gohir.D10G152300' => 'ghi', 'Gohir.D10G153200' => 'ghi', 'Gohir.D11G133701' => 'ghi', 'Gorai.004G074100' => 'gra', 'Gorai.005G046800' => 'gra', 'Gorai.006G246500' => 'gra', 'Gorai.006G246600' => 'gra', 'Gorai.007G142900' => 'gra', 'Gorai.011G171000' => 'gra', 'Gorai.011G171100' => 'gra', 'Gorai.013G104300' => 'gra', 'Gorai.013G104400' => 'gra', 'GSVIVG01000754001' => 'vvi', 'GSVIVG01000756001' => 'vvi', 'GSVIVG01010903001' => 'vvi', 'GSVIVG01017623001' => 'vvi', 'GSVIVG01018113001' => 'vvi', 'GSVIVG01018116001' => 'vvi', 'GSVIVG01018118001' => 'vvi', 'HanXRQChr03g0076211' => 'han', 'HanXRQChr03g0092431' => 'han', 'HanXRQChr03g0092441' => 'han', 'HanXRQChr03g0092591' => 'han', 'HanXRQChr03g0092671' => 'han', 'HanXRQChr03g0092681' => 'han', 'HanXRQChr03g0092691' => 'han', 'HanXRQChr03g0092701' => 'han', 'HanXRQChr03g0092721' => 'han', 'HanXRQChr03g0092731' => 'han', 'HanXRQChr04g0113681' => 'han', 'HanXRQChr10g0281371' => 'han', 'HanXRQChr11g0337141' => 'han', 'HanXRQChr13g0424521' => 'han', 'HanXRQChr13g0424531' => 'han', 'HanXRQChr13g0424541' => 'han', 'HanXRQChr16g0498221' => 'han', 'Haze_04377' => 'cav', 'Haze_11298' => 'cav', 'Haze_24547' => 'cav', 'Haze_24550' => 'cav', 'Haze_26587' => 'cav', 'Hma1.2p1_0650F.1_g195410' => 'hma', 'Hma1.2p1_0893F.1_g233470' => 'hma', 'HPP92_006508' => 'vpl', 'HPP92_024780' => 'vpl', 'Hund02688' => 'sun', 'Hund09380' => 'sun', 'Hund09381' => 'sun', 'Hund09832' => 'sun', 'Hund09833' => 'sun', 'Hund11351' => 'sun', 'Hund11513' => 'sun', 'Lalb_Chr06g0162591' => 'lal', 'Lalb_Chr06g0162601' => 'lal', 'Lalb_Chr06g0169321' => 'lal', 'Lalb_Chr09g0330951' => 'lal', 'Lalb_Chr16g0387631' => 'lal', 'Lalb_Chr21g0306241' => 'lal', 'Lalb_Chr25g0290051' => 'lal', 'Lalb_Chr25g0290061' => 'lal', 'Lalb_Chr25g0290071' => 'lal', 'Lj1g0003876' => 'lja', 'Lj1P1207T36' => 'lonja', 'Lj2C1156G12' => 'lonja', 'Lj3A793G39' => 'lonja', 'Lj3C580G2' => 'lonja', 'Lj3C780G2' => 'lonja', 'Lj3C780T4' => 'lonja', 'Lj3C793G9' => 'lonja', 'Lj4g0012960' => 'lja', 'Lj5g0021252' => 'lja', 'Lj5g0021484' => 'lja', 'Lj5g0024528' => 'lja', 'Lj6A399T12' => 'lonja', 'Lj6A656G65' => 'lonja', 'Lsat_1_v5_gn_3_125500' => 'lsa', 'Lsat_1_v5_gn_3_125540' => 'lsa', 'Lsat_1_v5_gn_5_72701' => 'lsa', 'Lsat_1_v5_gn_8_91560' => 'lsa', 'Lsat_1_v5_gn_9_9640' => 'lsa', 'Manes.01G200600' => 'mes', 'Manes.01G200700' => 'mes', 'Manes.03G168900' => 'mes', 'Manes.03G169000' => 'mes', 'Manes.05G085801' => 'mes', 'Manes.05G086200' => 'mes', 'Manes.15G036700' => 'mes', 'Manes.15G036900' => 'mes', 'Mapoly0004s0172' => 'mpo', 'Mapoly0023s0001' => 'mpo', 'Mapoly0142s0012' => 'mpo', 'MBI01_g32854_MAGBIO' => 'mbi', 'MBI11_g24427_MAGBIO' => 'mbi', 'MBI11_g47319_MAGBIO' => 'mbi', 'MCO01G433' => 'mco', 'MD00G1187800' => 'mdo', 'MD04G1226500' => 'mdo', 'MD05G1203900' => 'mdo', 'MD10G1191100' => 'mdo', 'MD12G1243500' => 'mdo', 'MD13G1207000' => 'mdo', 'MD13G1207100' => 'mdo', 'MD16G1208600' => 'mdo', 'Medtr1g050352' => 'mtr', 'Medtr1g070385' => 'mtr', 'Medtr1g070450' => 'mtr', 'Medtr1g075200' => 'mtr', 'Medtr1g075250' => 'mtr', 'Medtr1g075260' => 'mtr', 'Medtr1g475250' => 'mtr', 'Medtr4g075450' => 'mtr', 'Medtr7g096300' => 'mtr', 'Medtr8g105110' => 'mtr', 'MELO3C006470.2' => 'cme', 'MELO3C006471.2' => 'cme', 'MELO3C020772.2' => 'cme', 'MELO3C026780.2' => 'cme', 'MELO3C026781.2' => 'cme', 'Migut.D00390' => 'egut', 'Migut.G00435' => 'egut', 'Migut.G00436' => 'egut', 'Migut.G00718' => 'egut', 'MSTRG.21891' => 'ama', 'MSTRG.26910' => 'ama', 'MSTRG.4099' => 'ama', 'MSTRG.9925' => 'ama', 'Nitab4.5_0000165g0010' => 'nta', 'Nitab4.5_0000209g0180' => 'nta', 'Nitab4.5_0000244g0440' => 'nta', 'Nitab4.5_0000525g0220' => 'nta', 'Nitab4.5_0001597g0020' => 'nta', 'Nitab4.5_0001878g0040' => 'nta', 'Nitab4.5_0001878g0060' => 'nta', 'Nitab4.5_0002838g0100' => 'nta', 'Nitab4.5_0002838g0120' => 'nta', 'Nitab4.5_0004798g0030' => 'nta', 'Nitab4.5_0005420g0010' => 'nta', 'Nitab4.5_0005507g0010' => 'nta', 'Nitab4.5_0005574g0020' => 'nta', 'Nitab4.5_0005838g0010' => 'nta', 'Nitab4.5_0010580g0020' => 'nta', 'Nn1g02599' => 'nnu', 'Nn1g02608' => 'nnu', 'Nn3g17742' => 'nnu', 'Nn3g19534' => 'nnu', 'Nn3g19535' => 'nnu', 'Oeu008790.1' => 'oeu', 'Oeu008792.1' => 'oeu', 'Oeu032590.1' => 'oeu', 'Oeu035349.1' => 'oeu', 'Oeu049791.1' => 'oeu', 'Os01g0774500' => 'osa', 'Os03g0628800' => 'osa', 'Os03g0798600' => 'osa', 'Os05g0508800' => 'osa', 'Peaxi162Scf00036g02018' => 'pax', 'Peaxi162Scf00578g00032' => 'pax', 'Peaxi162Scf00578g00317' => 'pax', 'Peaxi162Scf00785g00114' => 'pax', 'Peaxi162Scf00813g00119' => 'pax', 'Peaxi162Scf00906g00227' => 'pax', 'PGR004G0875' => 'pgr', 'PGR004G2424' => 'pgr', 'PGR031G1239' => 'pgr', 'PGR031G2474' => 'pgr', 'PGR044G0423' => 'pgr', 'PGSC0003DMG400001128' => 'stu', 'PGSC0003DMG400007336' => 'stu', 'PGSC0003DMG400016318' => 'stu', 'PGSC0003DMG400016319' => 'stu', 'PGSC0003DMG400018074' => 'stu', 'Phvul.001G157700' => 'pvu', 'Phvul.002G148550' => 'pvu', 'Phvul.002G320200' => 'pvu', 'Phvul.003G089200' => 'pvu', 'Phvul.007G126000' => 'pvu', 'Phvul.007G126100' => 'pvu', 'Phvul.007G178000' => 'pvu', 'Phvul.007G178200' => 'pvu', 'Potri.002G043000' => 'ptr', 'Potri.002G043200' => 'ptr', 'Potri.003G123750' => 'ptr', 'Potri.005G055401' => 'ptr', 'Potri.005G219700' => 'ptr', 'Potri.005G220000' => 'ptr', 'Potri.008G161901' => 'ptr', 'Potri.008G162000' => 'ptr', 'Potri.008G162400' => 'ptr', 'Potri.010G076900' => 'ptr', 'Pp3c12_9180' => 'ppa', 'Pp3c13_19770' => 'ppa', 'Pp3c14_22950' => 'ppa', 'Pp3c16_12160' => 'ppa', 'Pp3c27_7820' => 'ppa', 'Pp3c2_3490' => 'ppa', 'Pp3c3_23700' => 'ppa', 'Pp3c3_36520' => 'ppa', 'Pp3c4_15250' => 'ppa', 'PRCOL_00007002' => 'pco', 'Prupe.1G030600' => 'ppe', 'Prupe.1G030700' => 'ppe', 'Prupe.6G345200' => 'ppe', 'Prupe.8G230300' => 'ppe', 'Prupe.8G230500' => 'ppe', 'Psat3g059600' => 'psa', 'Psat5g200920' => 'psa', 'Psat6g056440' => 'psa', 'Psat6g057360' => 'psa', 'Psat6g134120' => 'psa', 'Psat6g134160' => 'psa', 'Psat7g008640' => 'psa', 'Psat7g185240' => 'psa', 'PSO017G1330' => 'pso', 'PSO063G6097' => 'pso', 'PSO170G0835' => 'pso', 'PSO170G2499' => 'pso', 'PSO210G5058' => 'pso', 'PSO210G6154' => 'pso', 'PSO585G0031' => 'pso', 'PSO832G0264' => 'pso', 'PSO832G4288' => 'pso', 'QL03p027355' => 'qlo', 'QL03p027430' => 'qlo', 'QL04p081380' => 'qlo', 'QL06p015642' => 'qlo', 'QL06p015650' => 'qlo', 'QL06p015686' => 'qlo', 'QL12p042927' => 'qlo', 'QL93p1863_0035' => 'qlo', 'RcHm_v2.0_Chr3g0450581' => 'rch', 'RcHm_v2.0_Chr4g0390371' => 'rch', 'RcHm_v2.0_Chr4g0390381' => 'rch', 'RcHm_v2.0_Chr4g0390491' => 'rch', 'RcHm_v2.0_Chr4g0390501' => 'rch', 'RcHm_v2.0_Chr6g0289231' => 'rch', 'Rhsim04G0190400' => 'rsi', 'Rhsim04G0190500' => 'rsi', 'Rhsim04G0190600' => 'rsi', 'Rhsim13G0031400' => 'rsi', 'Rhsim13G0165600' => 'rsi', 'RhsimUnG0114600' => 'rsi', 'RhsimUnG0114700' => 'rsi', 'Sabra02G0034800' => 'sbr', 'Sabra02G0035100' => 'sbr', 'Sabra05G0168600' => 'sbr', 'Sabra05G0168800' => 'sbr', 'Sabra08G0123700' => 'sbr', 'Sabra10G0031900' => 'sbr', 'Sabra13G0039000' => 'sbr', 'SalBow2G0782' => 'sbo', 'SalBow2G1403' => 'sbo', 'SalBow4G0074' => 'sbo', 'SalBow4G2635' => 'sbo', 'SalBow5G3010' => 'sbo', 'Sc05g0000870' => 'sci', 'Sc05g0000890' => 'sci', 'Sc13g0005000' => 'sci', 'Sc13g0005030' => 'sci', 'Sc19g0003790' => 'sci', 'Sc19g0003800' => 'sci', 'Sed0003467' => 'sed', 'Sed0009355' => 'sed', 'Sed0009894' => 'sed', 'Sed0011972' => 'sed', 'Sed0021483' => 'sed', 'Sed0021750' => 'sed', 'Sed0026279' => 'sed', 'SEGI_05312' => 'sgi', 'SEGI_10112' => 'sgi', 'SEGI_15835' => 'sgi', 'SEGI_30386' => 'sgi', 'SEGI_34122' => 'sgi', 'SEGI_35063' => 'sgi', 'SGA_v2.0_scaffold101G29794' => 'sas', 'SGA_v2.0_scaffold1G00573' => 'sas', 'SGA_v2.0_scaffold79G25637' => 'sas', 'SGA_v2.0_scaffold88G27283' => 'sas', 'SGA_v2.0_scaffold88G27285' => 'sas', 'SGA_v2.0_scaffold88G27331' => 'sas', 'SHI09937' => 'shi', 'SMO119G0302' => 'smo', 'SMO137G0231' => 'smo', 'SMO367G1151' => 'smo', 'Solyc02g082000.3' => 'sly', 'Solyc06g031670.3' => 'sly', 'Solyc06g053810.3' => 'sly', 'Solyc07g025457.1' => 'sly', 'Solyc08g059740.1' => 'sly', 'Solyc08g059750.3' => 'sly', 'Solyc09g083370.3' => 'sly', 'Solyc12g038950.3' => 'sly', 'Sopen02g026630' => 'spe', 'Sopen06g018930' => 'spe', 'Sopen06g018940' => 'spe', 'Sopen08g009460' => 'spe', 'Sopen09g032290' => 'spe', 'Sp1g03080' => 'spa', 'Sp1g03090' => 'spa', 'Sp1g05480' => 'spa', 'Sp2g07860' => 'spa', 'Sp2g08430' => 'spa', 'Sp2g08440' => 'spa', 'Sp2g26200' => 'spa', 'Sp4g13170' => 'spa', 'Sp6g33840' => 'spa', 'SpUn1204_0010' => 'spa', 'TAR365G0908' => 'tar', 'TAR381G1270' => 'tar', 'TAR381G1651' => 'tar', 'TAR625G1131' => 'tar', 'TAR633G0962' => 'tar', 'TAR633G1729' => 'tar', 'TAR633G1864' => 'tar', 'TAR636G0221' => 'tar', 'TAR636G0314' => 'tar', 'TAR636G3202' => 'tar', 'THA.LOC104800805' => 'tha', 'THA.LOC104801096' => 'tha', 'THA.LOC104801555' => 'tha', 'THA.LOC104808491' => 'tha', 'THA.LOC104808595' => 'tha', 'THA.LOC104815985' => 'tha', 'THA.LOC104822250' => 'tha', 'THA.LOC104826071' => 'tha', 'Thecc.01G265200' => 'tca', 'Thecc.01G265300' => 'tca', 'Thecc.01G265700' => 'tca', 'Thecc.03G109100' => 'tca', 'Thecc.04G245900' => 'tca', 'Thecc.04G246000' => 'tca', 'Thhalv10003334m.g' => 'esa', 'Thhalv10005508m.g' => 'esa', 'Thhalv10005643m.g' => 'esa', 'Thhalv10007316m.g' => 'esa', 'Thhalv10009006m.g' => 'esa', 'Thhalv10009309m.g' => 'esa', 'Thhalv10014917m.g' => 'esa', 'Thhalv10014919m.g' => 'esa', 'Thhalv10015393m.g' => 'esa', 'Thhalv10016515m.g' => 'esa', 'Thhalv10029242m.g' => 'esa', 'TPR.G16654' => 'tpr', 'TPR.G20589' => 'tpr', 'TPR.G23029' => 'tpr', 'TPR.G27731' => 'tpr', 'TPR.G28889' => 'tpr', 'TPR.G28899' => 'tpr', 'TPR.G30846' => 'tpr', 'TPR.G5452' => 'tpr', 'TPR.G5713' => 'tpr', 'TPR.G9046' => 'tpr', 'TPR.G9061' => 'tpr', 'TWI09G1075' => 'twi', 'TWI12G0806' => 'twi', 'TWI18G0108' => 'twi', 'TWI53G1361' => 'twi', 'TWI73G0185' => 'twi', 'TWI73G0427' => 'twi', 'unitig_37.g12001' => 'ugi', 'unitig_747.g21660' => 'ugi', 'unitig_748.g7232' => 'ugi', 'unitig_748.g7315' => 'ugi', 'unitig_85.g27262' => 'ugi', 'unitig_92.g28220' => 'ugi', 'vmacro02632' => 'vma', 'vmacro08410' => 'vma', 'vmacro08411' => 'vma', 'vmacro15407' => 'vma', 'VMungo0251G3619' => 'vmu', 'VMungo0720G1204' => 'vmu', 'VMungo0720G1918' => 'vmu', 'VMungo0720G2387' => 'vmu', 'VMungo0720G2961' => 'vmu', 'VMungo1215G2154' => 'vmu', 'VMungo1383G2411' => 'vmu', 'Zm00001eb051130' => 'zma', 'Zm00001eb116830' => 'zma', 'Zm00001eb116850' => 'zma', 'Zm00001eb151740' => 'zma', 'Zm00001eb292360' => 'zma', 'Zm00001eb301640' => 'zma' ), 'gf_id' => 'HOM05D000856', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000856' ), 'data_identifier' => 'HOM05D000856', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000856', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p00010' => 'bna', 'A03p04160' => 'bna', 'A03p17160' => 'bna', 'A04p23370' => 'bna', 'A05p14860' => 'bna', 'A08p37020' => 'bna', 'A09p08050' => 'bna', 'A09p66800' => 'bna', 'A09p67940' => 'bna', 'A10p02680' => 'bna', 'A10p05320' => 'bna', 'Aa31LG1G20560' => 'aar', 'Aa31LG1G20610' => 'aar', 'Aa31LG1G7810' => 'aar', 'Aa31LG5G3590' => 'aar', 'Aa31LG5G6140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3819' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4683' => 'aag', 'Actinidia04480' => 'ach', 'Actinidia05466' => 'ach', 'Actinidia08445' => 'ach', 'Actinidia21170' => 'ach', 'Actinidia24812' => 'ach', 'Actinidia24951' => 'ach', 'Actinidia40088' => 'ach', 'Ah.02g111660' => 'amhyb', 'Ah.11g048900' => 'amhyb', 'Ah.11g049910' => 'amhyb', 'AL1G13870' => 'aly', 'AL1G13880' => 'aly', 'AL1G16760' => 'aly', 'AL390U10020' => 'aly', 'AL4G25520' => 'aly', 'AL6G19890' => 'aly', 'AL6G19900' => 'aly', 'AL6G19910' => 'aly', 'AL8G40100' => 'aly', 'Aqoxy2G03562' => 'aox', 'Aqoxy5G00316' => 'aox', 'Aqoxy5G00926' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1628KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1H403S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2FU6SJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.882I6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8YRY2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YN1SN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AF70II' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZA8L1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F916KL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHRD8H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KTZ8QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S22EMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8M29T' => 'arhy', 'AT1G04270' => 'ath', 'AT1G04280' => 'ath', 'AT1G06750' => 'ath', 'AT1G33850' => 'ath', 'AT2G30630' => 'ath', 'AT5G09490' => 'ath', 'AT5G09500' => 'ath', 'AT5G09510' => 'ath', 'AT5G43640' => 'ath', 'AT5G63070' => 'ath', 'ATR0605G315' => 'atr', 'Atru.chr11.175' => 'acertr', 'Atru.chr11.653' => 'acertr', 'Atru.chr3.1616' => 'acertr', 'Atru.chr4.2230' => 'acertr', 'Atru.chr4.2232' => 'acertr', 'Atru.chr5.1598' => 'acertr', 'Atru.chr5.1600' => 'acertr', 'Atru.chr5.2188' => 'acertr', 'AUR62008326' => 'cqu', 'AUR62011922' => 'cqu', 'AUR62011924' => 'cqu', 'AUR62021771' => 'cqu', 'AUR62032237' => 'cqu', 'AUR62032240' => 'cqu', 'BcaB01g05572' => 'bca', 'BcaB02g10337' => 'bca', 'BcaB04g19944' => 'bca', 'BcaB05g21548' => 'bca', 'BcaB05g21549' => 'bca', 'BcaB05g23227' => 'bca', 'BcaB06g26256' => 'bca', 'BcaB06g26257' => 'bca', 'BcaB06g28379' => 'bca', 'BcaC02g11159' => 'bca', 'BcaC03g13258' => 'bca', 'BcaC03g13259' => 'bca', 'BcaC05g24456' => 'bca', 'BcaC05g24457' => 'bca', 'BcaC07g36922' => 'bca', 'BcaC07g36923' => 'bca', 'BcaC07g42050' => 'bca', 'BcaC07g42176' => 'bca', 'BcaC07g42195' => 'bca', 'BcaC07g42196' => 'bca', 'BcaNung06674' => 'bca', 'BolC2t06351H' => 'bol', 'BolC2t06352H' => 'bol', 'BolC3t12993H' => 'bol', 'BolC4t23525H' => 'bol', 'BolC4t27475H' => 'bol', 'BolC5t29025H' => 'bol', 'BolC5t29026H' => 'bol', 'BolC8t46898H' => 'bol', 'BolC8t46899H' => 'bol', 'BolC8t52630H' => 'bol', 'BolC8t52765H' => 'bol', 'BolC9t53824H' => 'bol', 'BraA03t09760Z' => 'bra', 'BraA03t10990Z' => 'bra', 'BraA05t20413Z' => 'bra', 'BraA08t35602Z' => 'bra', 'BraA09t36458Z' => 'bra', 'BraA09t42018Z' => 'bra', 'BraA09t42129Z' => 'bra', 'BraA10t42536Z' => 'bra', 'BraA10t42537Z' => 'bra', 'C01p10690' => 'bna', 'C02p03890' => 'bna', 'C02p03900' => 'bna', 'C03p04620' => 'bna', 'C04p19870' => 'bna', 'C04p59670' => 'bna', 'C05p02460' => 'bna', 'C05p02470' => 'bna', 'C08p00980' => 'bna', 'C08p00990' => 'bna', 'C08p51030' => 'bna', 'C08p52360' => 'bna', 'C09p09120' => 'bna', 'CAN.G19.15' => 'can', 'CAN.G251.10' => 'can', 'CAN.G251.9' => 'can', 'CAN.G398.24' => 'can', 'CAN.G410.32' => 'can', 'CAN.G881.2' => 'can', 'CANSAT01G3025' => 'cansat', 'CANSAT78G1211' => 'cansat', 'CANSAT78G1218' => 'cansat', 'CANSAT78G1521' => 'cansat', 'CANSAT78G1670' => 'cansat', 'CARHR003600' => 'chi', 'CARHR003610' => 'chi', 'CARHR006290' => 'chi', 'CARHR006430' => 'chi', 'CARHR124110' => 'chi', 'CARHR203870' => 'chi', 'CARHR203880' => 'chi', 'CARHR203890' => 'chi', 'CARHR276880' => 'chi', 'Carub.0001s0346' => 'cru', 'Carub.0001s0347' => 'cru', 'Carub.0001s0607' => 'cru', 'Carub.0003s2768' => 'cru', 'Carub.0003s2769' => 'cru', 'Carub.0004s1178' => 'cru', 'Carub.0006s0806' => 'cru', 'Carub.0006s0807' => 'cru', 'Carub.0006s0808' => 'cru', 'Carub.0008s0501' => 'cru', 'Carub.0008s2379' => 'cru', 'Ca_08655_v3' => 'car', 'Ca_08922_v3' => 'car', 'Ca_08923_v3' => 'car', 'Ca_09119_v3' => 'car', 'Ca_09703_v3' => 'car', 'Ca_09705_v3' => 'car', 'Ca_09835_v3' => 'car', 'Ca_26403_v3' => 'car', 'Ca_30719_v3' => 'car', 'CBR_g17958' => 'cbr', 'CBR_g40516' => 'cbr', 'Cc00_g05350' => 'ccan', 'Cc01_g18690' => 'ccan', 'Cc03_g04830' => 'ccan', 'Cc03_g04850' => 'ccan', 'CDE02G4469' => 'cde', 'CDE06G0883' => 'cde', 'CDE06G1295' => 'cde', 'CDE06G1390' => 'cde', 'CDE07G0584' => 'cde', 'CDE07G1084' => 'cde', 'CDE08G1259' => 'cde', 'Cfa002341' => 'cfa', 'Cfa024337' => 'cfa', 'Ciclev10004749m.g' => 'ccl', 'Ciclev10006127m.g' => 'ccl', 'Ciclev10019720m.g' => 'ccl', 'Ciclev10022652m.g' => 'ccl', 'CiPaw.01G190400' => 'cil', 'CiPaw.01G190500' => 'cil', 'CiPaw.02G116400' => 'cil', 'CiPaw.02G116500' => 'cil', 'CiPaw.04G183000' => 'cil', 'CiPaw.04G183300' => 'cil', 'ClCG05G004610' => 'cla', 'ClCG05G004620' => 'cla', 'ClCG06G006730' => 'cla', 'ClCG06G006740' => 'cla', 'ClCG11G003690' => 'cla', 'COL.COLO4_08276' => 'col', 'COL.COLO4_08277' => 'col', 'COL.COLO4_15787' => 'col', 'COL.COLO4_15789' => 'col', 'Cpa.g.c44815' => 'cpa', 'Cpa.g.sc52.144' => 'cpa', 'Cpa.g.sc58.46' => 'cpa', 'Cpa.g.sc58.47' => 'cpa', 'Cre08.g360900' => 'cre', 'CsaV3_2G013030' => 'csa', 'CsaV3_2G013050' => 'csa', 'CsaV3_2G015620' => 'csa', 'CsaV3_3G012590' => 'csa', 'CsaV3_3G012600' => 'csa', 'CSS0001641' => 'camsi', 'CSS0008310' => 'camsi', 'CSS0013011' => 'camsi', 'CSS0017147' => 'camsi', 'CSS0022970' => 'camsi', 'CSS0025655' => 'camsi', 'CSS0028665' => 'camsi', 'CSS0029117' => 'camsi', 'CSS0032024' => 'camsi', 'CSS0039681' => 'camsi', 'CSS0046516' => 'camsi', 'CSS0050307' => 'camsi', 'DCAR_005871' => 'dca', 'DCAR_007342' => 'dca', 'DCAR_024228' => 'dca', 'DCAR_027277' => 'dca', 'DCAR_030718' => 'dca', 'Dinv20287' => 'din', 'Dinv22461' => 'din', 'Dinv22464' => 'din', 'Dinv29912' => 'din', 'Dinv29913' => 'din', 'Dinv34580' => 'din', 'Dinv34582' => 'din', 'Dinv44632' => 'din', 'Duzib052G0266' => 'dzi', 'Duzib133G0907' => 'dzi', 'Duzib133G1034' => 'dzi', 'Duzib138G0207' => 'dzi', 'Duzib138G0491' => 'dzi', 'Duzib151G0812' => 'dzi', 'Duzib151G1166' => 'dzi', 'Duzib168G0192' => 'dzi', 'Duzib211G0077' => 'dzi', 'Duzib212G0429' => 'dzi', 'Duzib212G0472' => 'dzi', 'ECA233G2617' => 'eca', 'ECA236G4188' => 'eca', 'ECA240G0936' => 'eca', 'ECA240G1129' => 'eca', 'ECA247G0623' => 'eca', 'EL10Ac5g10451' => 'bvu', 'EL10Ac5g10453' => 'bvu', 'EL10Ac5g10894' => 'bvu', 'Eucgr.H00192' => 'egr', 'Eucgr.H00193' => 'egr', 'Eucgr.H00194' => 'egr', 'Eucgr.J01562' => 'egr', 'Eucgr.K03301' => 'egr', 'FAN02G0632' => 'fan', 'FAN05G5378' => 'fan', 'FAN09G3247' => 'fan', 'FAN12G0435' => 'fan', 'FAN12G2426' => 'fan', 'FAN14G1707' => 'fan', 'FAN14G4725' => 'fan', 'FAN15G2071' => 'fan', 'FAN17G3065' => 'fan', 'FAN19G1376' => 'fan', 'FAN20G0354' => 'fan', 'FAN20G2429' => 'fan', 'FAN20G2658' => 'fan', 'FAN24G2343' => 'fan', 'FAN27G2362' => 'fan', 'FAN28G1765' => 'fan', 'FvH4_1g16020' => 'fve', 'FvH4_2g04890' => 'fve', 'FvH4_2g22270' => 'fve', 'FvH4_4g02630' => 'fve', 'FvH4_4g02640' => 'fve', 'FvH4_6g02650' => 'fve', 'Glyma.02G140600' => 'gma', 'Glyma.03G159900' => 'gma', 'Glyma.05G234800' => 'gma', 'Glyma.07G269600' => 'gma', 'Glyma.08G042300' => 'gma', 'Glyma.10G033500' => 'gma', 'Glyma.10G185200' => 'gma', 'Glyma.17G004300' => 'gma', 'Glyma.19G161900' => 'gma', 'Glyma.20G205100' => 'gma', 'Glyma.20G205200' => 'gma', 'Gohir.A01G139101' => 'ghi', 'Gohir.A02G035600' => 'ghi', 'Gohir.A02G117901' => 'ghi', 'Gohir.A07G210100' => 'ghi', 'Gohir.A07G210200' => 'ghi', 'Gohir.A08G061100' => 'ghi', 'Gohir.A09G223000' => 'ghi', 'Gohir.A09G223100' => 'ghi', 'Gohir.A10G113900' => 'ghi', 'Gohir.A10G114000' => 'ghi', 'Gohir.D02G042300' => 'ghi', 'Gohir.D07G216100' => 'ghi', 'Gohir.D07G216200' => 'ghi', 'Gohir.D08G070400' => 'ghi', 'Gohir.D09G225000' => 'ghi', 'Gohir.D09G225100' => 'ghi', 'Gohir.D10G152300' => 'ghi', 'Gohir.D10G153200' => 'ghi', 'Gohir.D11G133701' => 'ghi', 'Gorai.004G074100' => 'gra', 'Gorai.005G046800' => 'gra', 'Gorai.006G246500' => 'gra', 'Gorai.006G246600' => 'gra', 'Gorai.007G142900' => 'gra', 'Gorai.011G171000' => 'gra', 'Gorai.011G171100' => 'gra', 'Gorai.013G104300' => 'gra', 'Gorai.013G104400' => 'gra', 'GSVIVG01000754001' => 'vvi', 'GSVIVG01000756001' => 'vvi', 'GSVIVG01010903001' => 'vvi', 'GSVIVG01017623001' => 'vvi', 'GSVIVG01018113001' => 'vvi', 'GSVIVG01018116001' => 'vvi', 'GSVIVG01018118001' => 'vvi', 'HanXRQChr03g0076211' => 'han', 'HanXRQChr03g0092431' => 'han', 'HanXRQChr03g0092441' => 'han', 'HanXRQChr03g0092591' => 'han', 'HanXRQChr03g0092671' => 'han', 'HanXRQChr03g0092681' => 'han', 'HanXRQChr03g0092691' => 'han', 'HanXRQChr03g0092701' => 'han', 'HanXRQChr03g0092721' => 'han', 'HanXRQChr03g0092731' => 'han', 'HanXRQChr04g0113681' => 'han', 'HanXRQChr10g0281371' => 'han', 'HanXRQChr11g0337141' => 'han', 'HanXRQChr13g0424521' => 'han', 'HanXRQChr13g0424531' => 'han', 'HanXRQChr13g0424541' => 'han', 'HanXRQChr16g0498221' => 'han', 'Haze_04377' => 'cav', 'Haze_11298' => 'cav', 'Haze_24547' => 'cav', 'Haze_24550' => 'cav', 'Haze_26587' => 'cav', 'Hma1.2p1_0650F.1_g195410' => 'hma', 'Hma1.2p1_0893F.1_g233470' => 'hma', 'HPP92_006508' => 'vpl', 'HPP92_024780' => 'vpl', 'Hund02688' => 'sun', 'Hund09380' => 'sun', 'Hund09381' => 'sun', 'Hund09832' => 'sun', 'Hund09833' => 'sun', 'Hund11351' => 'sun', 'Hund11513' => 'sun', 'Lalb_Chr06g0162591' => 'lal', 'Lalb_Chr06g0162601' => 'lal', 'Lalb_Chr06g0169321' => 'lal', 'Lalb_Chr09g0330951' => 'lal', 'Lalb_Chr16g0387631' => 'lal', 'Lalb_Chr21g0306241' => 'lal', 'Lalb_Chr25g0290051' => 'lal', 'Lalb_Chr25g0290061' => 'lal', 'Lalb_Chr25g0290071' => 'lal', 'Lj1g0003876' => 'lja', 'Lj1P1207T36' => 'lonja', 'Lj2C1156G12' => 'lonja', 'Lj3A793G39' => 'lonja', 'Lj3C580G2' => 'lonja', 'Lj3C780G2' => 'lonja', 'Lj3C780T4' => 'lonja', 'Lj3C793G9' => 'lonja', 'Lj4g0012960' => 'lja', 'Lj5g0021252' => 'lja', 'Lj5g0021484' => 'lja', 'Lj5g0024528' => 'lja', 'Lj6A399T12' => 'lonja', 'Lj6A656G65' => 'lonja', 'Lsat_1_v5_gn_3_125500' => 'lsa', 'Lsat_1_v5_gn_3_125540' => 'lsa', 'Lsat_1_v5_gn_5_72701' => 'lsa', 'Lsat_1_v5_gn_8_91560' => 'lsa', 'Lsat_1_v5_gn_9_9640' => 'lsa', 'Manes.01G200600' => 'mes', 'Manes.01G200700' => 'mes', 'Manes.03G168900' => 'mes', 'Manes.03G169000' => 'mes', 'Manes.05G085801' => 'mes', 'Manes.05G086200' => 'mes', 'Manes.15G036700' => 'mes', 'Manes.15G036900' => 'mes', 'Mapoly0004s0172' => 'mpo', 'Mapoly0023s0001' => 'mpo', 'Mapoly0142s0012' => 'mpo', 'MBI01_g32854_MAGBIO' => 'mbi', 'MBI11_g24427_MAGBIO' => 'mbi', 'MBI11_g47319_MAGBIO' => 'mbi', 'MCO01G433' => 'mco', 'MD00G1187800' => 'mdo', 'MD04G1226500' => 'mdo', 'MD05G1203900' => 'mdo', 'MD10G1191100' => 'mdo', 'MD12G1243500' => 'mdo', 'MD13G1207000' => 'mdo', 'MD13G1207100' => 'mdo', 'MD16G1208600' => 'mdo', 'Medtr1g050352' => 'mtr', 'Medtr1g070385' => 'mtr', 'Medtr1g070450' => 'mtr', 'Medtr1g075200' => 'mtr', 'Medtr1g075250' => 'mtr', 'Medtr1g075260' => 'mtr', 'Medtr1g475250' => 'mtr', 'Medtr4g075450' => 'mtr', 'Medtr7g096300' => 'mtr', 'Medtr8g105110' => 'mtr', 'MELO3C006470.2' => 'cme', 'MELO3C006471.2' => 'cme', 'MELO3C020772.2' => 'cme', 'MELO3C026780.2' => 'cme', 'MELO3C026781.2' => 'cme', 'Migut.D00390' => 'egut', 'Migut.G00435' => 'egut', 'Migut.G00436' => 'egut', 'Migut.G00718' => 'egut', 'MSTRG.21891' => 'ama', 'MSTRG.26910' => 'ama', 'MSTRG.4099' => 'ama', 'MSTRG.9925' => 'ama', 'Nitab4.5_0000165g0010' => 'nta', 'Nitab4.5_0000209g0180' => 'nta', 'Nitab4.5_0000244g0440' => 'nta', 'Nitab4.5_0000525g0220' => 'nta', 'Nitab4.5_0001597g0020' => 'nta', 'Nitab4.5_0001878g0040' => 'nta', 'Nitab4.5_0001878g0060' => 'nta', 'Nitab4.5_0002838g0100' => 'nta', 'Nitab4.5_0002838g0120' => 'nta', 'Nitab4.5_0004798g0030' => 'nta', 'Nitab4.5_0005420g0010' => 'nta', 'Nitab4.5_0005507g0010' => 'nta', 'Nitab4.5_0005574g0020' => 'nta', 'Nitab4.5_0005838g0010' => 'nta', 'Nitab4.5_0010580g0020' => 'nta', 'Nn1g02599' => 'nnu', 'Nn1g02608' => 'nnu', 'Nn3g17742' => 'nnu', 'Nn3g19534' => 'nnu', 'Nn3g19535' => 'nnu', 'Oeu008790.1' => 'oeu', 'Oeu008792.1' => 'oeu', 'Oeu032590.1' => 'oeu', 'Oeu035349.1' => 'oeu', 'Oeu049791.1' => 'oeu', 'Os01g0774500' => 'osa', 'Os03g0628800' => 'osa', 'Os03g0798600' => 'osa', 'Os05g0508800' => 'osa', 'Peaxi162Scf00036g02018' => 'pax', 'Peaxi162Scf00578g00032' => 'pax', 'Peaxi162Scf00578g00317' => 'pax', 'Peaxi162Scf00785g00114' => 'pax', 'Peaxi162Scf00813g00119' => 'pax', 'Peaxi162Scf00906g00227' => 'pax', 'PGR004G0875' => 'pgr', 'PGR004G2424' => 'pgr', 'PGR031G1239' => 'pgr', 'PGR031G2474' => 'pgr', 'PGR044G0423' => 'pgr', 'PGSC0003DMG400001128' => 'stu', 'PGSC0003DMG400007336' => 'stu', 'PGSC0003DMG400016318' => 'stu', 'PGSC0003DMG400016319' => 'stu', 'PGSC0003DMG400018074' => 'stu', 'Phvul.001G157700' => 'pvu', 'Phvul.002G148550' => 'pvu', 'Phvul.002G320200' => 'pvu', 'Phvul.003G089200' => 'pvu', 'Phvul.007G126000' => 'pvu', 'Phvul.007G126100' => 'pvu', 'Phvul.007G178000' => 'pvu', 'Phvul.007G178200' => 'pvu', 'Potri.002G043000' => 'ptr', 'Potri.002G043200' => 'ptr', 'Potri.003G123750' => 'ptr', 'Potri.005G055401' => 'ptr', 'Potri.005G219700' => 'ptr', 'Potri.005G220000' => 'ptr', 'Potri.008G161901' => 'ptr', 'Potri.008G162000' => 'ptr', 'Potri.008G162400' => 'ptr', 'Potri.010G076900' => 'ptr', 'Pp3c12_9180' => 'ppa', 'Pp3c13_19770' => 'ppa', 'Pp3c14_22950' => 'ppa', 'Pp3c16_12160' => 'ppa', 'Pp3c27_7820' => 'ppa', 'Pp3c2_3490' => 'ppa', 'Pp3c3_23700' => 'ppa', 'Pp3c3_36520' => 'ppa', 'Pp3c4_15250' => 'ppa', 'PRCOL_00007002' => 'pco', 'Prupe.1G030600' => 'ppe', 'Prupe.1G030700' => 'ppe', 'Prupe.6G345200' => 'ppe', 'Prupe.8G230300' => 'ppe', 'Prupe.8G230500' => 'ppe', 'Psat3g059600' => 'psa', 'Psat5g200920' => 'psa', 'Psat6g056440' => 'psa', 'Psat6g057360' => 'psa', 'Psat6g134120' => 'psa', 'Psat6g134160' => 'psa', 'Psat7g008640' => 'psa', 'Psat7g185240' => 'psa', 'PSO017G1330' => 'pso', 'PSO063G6097' => 'pso', 'PSO170G0835' => 'pso', 'PSO170G2499' => 'pso', 'PSO210G5058' => 'pso', 'PSO210G6154' => 'pso', 'PSO585G0031' => 'pso', 'PSO832G0264' => 'pso', 'PSO832G4288' => 'pso', 'QL03p027355' => 'qlo', 'QL03p027430' => 'qlo', 'QL04p081380' => 'qlo', 'QL06p015642' => 'qlo', 'QL06p015650' => 'qlo', 'QL06p015686' => 'qlo', 'QL12p042927' => 'qlo', 'QL93p1863_0035' => 'qlo', 'RcHm_v2.0_Chr3g0450581' => 'rch', 'RcHm_v2.0_Chr4g0390371' => 'rch', 'RcHm_v2.0_Chr4g0390381' => 'rch', 'RcHm_v2.0_Chr4g0390491' => 'rch', 'RcHm_v2.0_Chr4g0390501' => 'rch', 'RcHm_v2.0_Chr6g0289231' => 'rch', 'Rhsim04G0190400' => 'rsi', 'Rhsim04G0190500' => 'rsi', 'Rhsim04G0190600' => 'rsi', 'Rhsim13G0031400' => 'rsi', 'Rhsim13G0165600' => 'rsi', 'RhsimUnG0114600' => 'rsi', 'RhsimUnG0114700' => 'rsi', 'Sabra02G0034800' => 'sbr', 'Sabra02G0035100' => 'sbr', 'Sabra05G0168600' => 'sbr', 'Sabra05G0168800' => 'sbr', 'Sabra08G0123700' => 'sbr', 'Sabra10G0031900' => 'sbr', 'Sabra13G0039000' => 'sbr', 'SalBow2G0782' => 'sbo', 'SalBow2G1403' => 'sbo', 'SalBow4G0074' => 'sbo', 'SalBow4G2635' => 'sbo', 'SalBow5G3010' => 'sbo', 'Sc05g0000870' => 'sci', 'Sc05g0000890' => 'sci', 'Sc13g0005000' => 'sci', 'Sc13g0005030' => 'sci', 'Sc19g0003790' => 'sci', 'Sc19g0003800' => 'sci', 'Sed0003467' => 'sed', 'Sed0009355' => 'sed', 'Sed0009894' => 'sed', 'Sed0011972' => 'sed', 'Sed0021483' => 'sed', 'Sed0021750' => 'sed', 'Sed0026279' => 'sed', 'SEGI_05312' => 'sgi', 'SEGI_10112' => 'sgi', 'SEGI_15835' => 'sgi', 'SEGI_30386' => 'sgi', 'SEGI_34122' => 'sgi', 'SEGI_35063' => 'sgi', 'SGA_v2.0_scaffold101G29794' => 'sas', 'SGA_v2.0_scaffold1G00573' => 'sas', 'SGA_v2.0_scaffold79G25637' => 'sas', 'SGA_v2.0_scaffold88G27283' => 'sas', 'SGA_v2.0_scaffold88G27285' => 'sas', 'SGA_v2.0_scaffold88G27331' => 'sas', 'SHI09937' => 'shi', 'SMO119G0302' => 'smo', 'SMO137G0231' => 'smo', 'SMO367G1151' => 'smo', 'Solyc02g082000.3' => 'sly', 'Solyc06g031670.3' => 'sly', 'Solyc06g053810.3' => 'sly', 'Solyc07g025457.1' => 'sly', 'Solyc08g059740.1' => 'sly', 'Solyc08g059750.3' => 'sly', 'Solyc09g083370.3' => 'sly', 'Solyc12g038950.3' => 'sly', 'Sopen02g026630' => 'spe', 'Sopen06g018930' => 'spe', 'Sopen06g018940' => 'spe', 'Sopen08g009460' => 'spe', 'Sopen09g032290' => 'spe', 'Sp1g03080' => 'spa', 'Sp1g03090' => 'spa', 'Sp1g05480' => 'spa', 'Sp2g07860' => 'spa', 'Sp2g08430' => 'spa', 'Sp2g08440' => 'spa', 'Sp2g26200' => 'spa', 'Sp4g13170' => 'spa', 'Sp6g33840' => 'spa', 'SpUn1204_0010' => 'spa', 'TAR365G0908' => 'tar', 'TAR381G1270' => 'tar', 'TAR381G1651' => 'tar', 'TAR625G1131' => 'tar', 'TAR633G0962' => 'tar', 'TAR633G1729' => 'tar', 'TAR633G1864' => 'tar', 'TAR636G0221' => 'tar', 'TAR636G0314' => 'tar', 'TAR636G3202' => 'tar', 'THA.LOC104800805' => 'tha', 'THA.LOC104801096' => 'tha', 'THA.LOC104801555' => 'tha', 'THA.LOC104808491' => 'tha', 'THA.LOC104808595' => 'tha', 'THA.LOC104815985' => 'tha', 'THA.LOC104822250' => 'tha', 'THA.LOC104826071' => 'tha', 'Thecc.01G265200' => 'tca', 'Thecc.01G265300' => 'tca', 'Thecc.01G265700' => 'tca', 'Thecc.03G109100' => 'tca', 'Thecc.04G245900' => 'tca', 'Thecc.04G246000' => 'tca', 'Thhalv10003334m.g' => 'esa', 'Thhalv10005508m.g' => 'esa', 'Thhalv10005643m.g' => 'esa', 'Thhalv10007316m.g' => 'esa', 'Thhalv10009006m.g' => 'esa', 'Thhalv10009309m.g' => 'esa', 'Thhalv10014917m.g' => 'esa', 'Thhalv10014919m.g' => 'esa', 'Thhalv10015393m.g' => 'esa', 'Thhalv10016515m.g' => 'esa', 'Thhalv10029242m.g' => 'esa', 'TPR.G16654' => 'tpr', 'TPR.G20589' => 'tpr', 'TPR.G23029' => 'tpr', 'TPR.G27731' => 'tpr', 'TPR.G28889' => 'tpr', 'TPR.G28899' => 'tpr', 'TPR.G30846' => 'tpr', 'TPR.G5452' => 'tpr', 'TPR.G5713' => 'tpr', 'TPR.G9046' => 'tpr', 'TPR.G9061' => 'tpr', 'TWI09G1075' => 'twi', 'TWI12G0806' => 'twi', 'TWI18G0108' => 'twi', 'TWI53G1361' => 'twi', 'TWI73G0185' => 'twi', 'TWI73G0427' => 'twi', 'unitig_37.g12001' => 'ugi', 'unitig_747.g21660' => 'ugi', 'unitig_748.g7232' => 'ugi', 'unitig_748.g7315' => 'ugi', 'unitig_85.g27262' => 'ugi', 'unitig_92.g28220' => 'ugi', 'vmacro02632' => 'vma', 'vmacro08410' => 'vma', 'vmacro08411' => 'vma', 'vmacro15407' => 'vma', 'VMungo0251G3619' => 'vmu', 'VMungo0720G1204' => 'vmu', 'VMungo0720G1918' => 'vmu', 'VMungo0720G2387' => 'vmu', 'VMungo0720G2961' => 'vmu', 'VMungo1215G2154' => 'vmu', 'VMungo1383G2411' => 'vmu', 'Zm00001eb051130' => 'zma', 'Zm00001eb116830' => 'zma', 'Zm00001eb116850' => 'zma', 'Zm00001eb151740' => 'zma', 'Zm00001eb292360' => 'zma', 'Zm00001eb301640' => 'zma' ) $gf_id = 'HOM05D000856' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000856' ) $data_identifier = 'HOM05D000856' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 13, 'ath' => (int) 10, 'atr' => (int) 1, 'acertr' => (int) 8, 'cqu' => (int) 6, 'bca' => (int) 21, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 11, 'car' => (int) 9, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 8, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 5, 'fan' => (int) 16, 'fve' => (int) 6, 'gma' => (int) 11, 'ghi' => (int) 19, 'gra' => (int) 9, 'vvi' => (int) 7, 'han' => (int) 17, 'cav' => (int) 5, 'hma' => (int) 2, 'vpl' => (int) 2, 'sun' => (int) 7, 'lal' => (int) 9, 'lja' => (int) 5, 'lonja' => (int) 9, 'lsa' => (int) 5, 'mes' => (int) 8, 'mpo' => (int) 3, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 10, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 15, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 9, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 9, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 6, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 5, 'spa' => (int) 10, 'tar' => (int) 10, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 11, 'tpr' => (int) 11, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 4, 'vmu' => (int) 7, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb301640' $species_info = array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ) $local_species = 'lja' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000856', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p00010' => 'bna', 'A03p04160' => 'bna', 'A03p17160' => 'bna', 'A04p23370' => 'bna', 'A05p14860' => 'bna', 'A08p37020' => 'bna', 'A09p08050' => 'bna', 'A09p66800' => 'bna', 'A09p67940' => 'bna', 'A10p02680' => 'bna', 'A10p05320' => 'bna', 'Aa31LG1G20560' => 'aar', 'Aa31LG1G20610' => 'aar', 'Aa31LG1G7810' => 'aar', 'Aa31LG5G3590' => 'aar', 'Aa31LG5G6140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3819' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4683' => 'aag', 'Actinidia04480' => 'ach', 'Actinidia05466' => 'ach', 'Actinidia08445' => 'ach', 'Actinidia21170' => 'ach', 'Actinidia24812' => 'ach', 'Actinidia24951' => 'ach', 'Actinidia40088' => 'ach', 'Ah.02g111660' => 'amhyb', 'Ah.11g048900' => 'amhyb', 'Ah.11g049910' => 'amhyb', 'AL1G13870' => 'aly', 'AL1G13880' => 'aly', 'AL1G16760' => 'aly', 'AL390U10020' => 'aly', 'AL4G25520' => 'aly', 'AL6G19890' => 'aly', 'AL6G19900' => 'aly', 'AL6G19910' => 'aly', 'AL8G40100' => 'aly', 'Aqoxy2G03562' => 'aox', 'Aqoxy5G00316' => 'aox', 'Aqoxy5G00926' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1628KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1H403S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2FU6SJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.882I6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8YRY2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YN1SN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AF70II' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZA8L1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F916KL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHRD8H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KTZ8QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S22EMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8M29T' => 'arhy', 'AT1G04270' => 'ath', 'AT1G04280' => 'ath', 'AT1G06750' => 'ath', 'AT1G33850' => 'ath', 'AT2G30630' => 'ath', 'AT5G09490' => 'ath', 'AT5G09500' => 'ath', 'AT5G09510' => 'ath', 'AT5G43640' => 'ath', 'AT5G63070' => 'ath', 'ATR0605G315' => 'atr', 'Atru.chr11.175' => 'acertr', 'Atru.chr11.653' => 'acertr', 'Atru.chr3.1616' => 'acertr', 'Atru.chr4.2230' => 'acertr', 'Atru.chr4.2232' => 'acertr', 'Atru.chr5.1598' => 'acertr', 'Atru.chr5.1600' => 'acertr', 'Atru.chr5.2188' => 'acertr', 'AUR62008326' => 'cqu', 'AUR62011922' => 'cqu', 'AUR62011924' => 'cqu', 'AUR62021771' => 'cqu', 'AUR62032237' => 'cqu', 'AUR62032240' => 'cqu', 'BcaB01g05572' => 'bca', 'BcaB02g10337' => 'bca', 'BcaB04g19944' => 'bca', 'BcaB05g21548' => 'bca', 'BcaB05g21549' => 'bca', 'BcaB05g23227' => 'bca', 'BcaB06g26256' => 'bca', 'BcaB06g26257' => 'bca', 'BcaB06g28379' => 'bca', 'BcaC02g11159' => 'bca', 'BcaC03g13258' => 'bca', 'BcaC03g13259' => 'bca', 'BcaC05g24456' => 'bca', 'BcaC05g24457' => 'bca', 'BcaC07g36922' => 'bca', 'BcaC07g36923' => 'bca', 'BcaC07g42050' => 'bca', 'BcaC07g42176' => 'bca', 'BcaC07g42195' => 'bca', 'BcaC07g42196' => 'bca', 'BcaNung06674' => 'bca', 'BolC2t06351H' => 'bol', 'BolC2t06352H' => 'bol', 'BolC3t12993H' => 'bol', 'BolC4t23525H' => 'bol', 'BolC4t27475H' => 'bol', 'BolC5t29025H' => 'bol', 'BolC5t29026H' => 'bol', 'BolC8t46898H' => 'bol', 'BolC8t46899H' => 'bol', 'BolC8t52630H' => 'bol', 'BolC8t52765H' => 'bol', 'BolC9t53824H' => 'bol', 'BraA03t09760Z' => 'bra', 'BraA03t10990Z' => 'bra', 'BraA05t20413Z' => 'bra', 'BraA08t35602Z' => 'bra', 'BraA09t36458Z' => 'bra', 'BraA09t42018Z' => 'bra', 'BraA09t42129Z' => 'bra', 'BraA10t42536Z' => 'bra', 'BraA10t42537Z' => 'bra', 'C01p10690' => 'bna', 'C02p03890' => 'bna', 'C02p03900' => 'bna', 'C03p04620' => 'bna', 'C04p19870' => 'bna', 'C04p59670' => 'bna', 'C05p02460' => 'bna', 'C05p02470' => 'bna', 'C08p00980' => 'bna', 'C08p00990' => 'bna', 'C08p51030' => 'bna', 'C08p52360' => 'bna', 'C09p09120' => 'bna', 'CAN.G19.15' => 'can', 'CAN.G251.10' => 'can', 'CAN.G251.9' => 'can', 'CAN.G398.24' => 'can', 'CAN.G410.32' => 'can', 'CAN.G881.2' => 'can', 'CANSAT01G3025' => 'cansat', 'CANSAT78G1211' => 'cansat', 'CANSAT78G1218' => 'cansat', 'CANSAT78G1521' => 'cansat', 'CANSAT78G1670' => 'cansat', 'CARHR003600' => 'chi', 'CARHR003610' => 'chi', 'CARHR006290' => 'chi', 'CARHR006430' => 'chi', 'CARHR124110' => 'chi', 'CARHR203870' => 'chi', 'CARHR203880' => 'chi', 'CARHR203890' => 'chi', 'CARHR276880' => 'chi', 'Carub.0001s0346' => 'cru', 'Carub.0001s0347' => 'cru', 'Carub.0001s0607' => 'cru', 'Carub.0003s2768' => 'cru', 'Carub.0003s2769' => 'cru', 'Carub.0004s1178' => 'cru', 'Carub.0006s0806' => 'cru', 'Carub.0006s0807' => 'cru', 'Carub.0006s0808' => 'cru', 'Carub.0008s0501' => 'cru', 'Carub.0008s2379' => 'cru', 'Ca_08655_v3' => 'car', 'Ca_08922_v3' => 'car', 'Ca_08923_v3' => 'car', 'Ca_09119_v3' => 'car', 'Ca_09703_v3' => 'car', 'Ca_09705_v3' => 'car', 'Ca_09835_v3' => 'car', 'Ca_26403_v3' => 'car', 'Ca_30719_v3' => 'car', 'CBR_g17958' => 'cbr', 'CBR_g40516' => 'cbr', 'Cc00_g05350' => 'ccan', 'Cc01_g18690' => 'ccan', 'Cc03_g04830' => 'ccan', 'Cc03_g04850' => 'ccan', 'CDE02G4469' => 'cde', 'CDE06G0883' => 'cde', 'CDE06G1295' => 'cde', 'CDE06G1390' => 'cde', 'CDE07G0584' => 'cde', 'CDE07G1084' => 'cde', 'CDE08G1259' => 'cde', 'Cfa002341' => 'cfa', 'Cfa024337' => 'cfa', 'Ciclev10004749m.g' => 'ccl', 'Ciclev10006127m.g' => 'ccl', 'Ciclev10019720m.g' => 'ccl', 'Ciclev10022652m.g' => 'ccl', 'CiPaw.01G190400' => 'cil', 'CiPaw.01G190500' => 'cil', 'CiPaw.02G116400' => 'cil', 'CiPaw.02G116500' => 'cil', 'CiPaw.04G183000' => 'cil', 'CiPaw.04G183300' => 'cil', 'ClCG05G004610' => 'cla', 'ClCG05G004620' => 'cla', 'ClCG06G006730' => 'cla', 'ClCG06G006740' => 'cla', 'ClCG11G003690' => 'cla', 'COL.COLO4_08276' => 'col', 'COL.COLO4_08277' => 'col', 'COL.COLO4_15787' => 'col', 'COL.COLO4_15789' => 'col', 'Cpa.g.c44815' => 'cpa', 'Cpa.g.sc52.144' => 'cpa', 'Cpa.g.sc58.46' => 'cpa', 'Cpa.g.sc58.47' => 'cpa', 'Cre08.g360900' => 'cre', 'CsaV3_2G013030' => 'csa', 'CsaV3_2G013050' => 'csa', 'CsaV3_2G015620' => 'csa', 'CsaV3_3G012590' => 'csa', 'CsaV3_3G012600' => 'csa', 'CSS0001641' => 'camsi', 'CSS0008310' => 'camsi', 'CSS0013011' => 'camsi', 'CSS0017147' => 'camsi', 'CSS0022970' => 'camsi', 'CSS0025655' => 'camsi', 'CSS0028665' => 'camsi', 'CSS0029117' => 'camsi', 'CSS0032024' => 'camsi', 'CSS0039681' => 'camsi', 'CSS0046516' => 'camsi', 'CSS0050307' => 'camsi', 'DCAR_005871' => 'dca', 'DCAR_007342' => 'dca', 'DCAR_024228' => 'dca', 'DCAR_027277' => 'dca', 'DCAR_030718' => 'dca', 'Dinv20287' => 'din', 'Dinv22461' => 'din', 'Dinv22464' => 'din', 'Dinv29912' => 'din', 'Dinv29913' => 'din', 'Dinv34580' => 'din', 'Dinv34582' => 'din', 'Dinv44632' => 'din', 'Duzib052G0266' => 'dzi', 'Duzib133G0907' => 'dzi', 'Duzib133G1034' => 'dzi', 'Duzib138G0207' => 'dzi', 'Duzib138G0491' => 'dzi', 'Duzib151G0812' => 'dzi', 'Duzib151G1166' => 'dzi', 'Duzib168G0192' => 'dzi', 'Duzib211G0077' => 'dzi', 'Duzib212G0429' => 'dzi', 'Duzib212G0472' => 'dzi', 'ECA233G2617' => 'eca', 'ECA236G4188' => 'eca', 'ECA240G0936' => 'eca', 'ECA240G1129' => 'eca', 'ECA247G0623' => 'eca', 'EL10Ac5g10451' => 'bvu', 'EL10Ac5g10453' => 'bvu', 'EL10Ac5g10894' => 'bvu', 'Eucgr.H00192' => 'egr', 'Eucgr.H00193' => 'egr', 'Eucgr.H00194' => 'egr', 'Eucgr.J01562' => 'egr', 'Eucgr.K03301' => 'egr', 'FAN02G0632' => 'fan', 'FAN05G5378' => 'fan', 'FAN09G3247' => 'fan', 'FAN12G0435' => 'fan', 'FAN12G2426' => 'fan', 'FAN14G1707' => 'fan', 'FAN14G4725' => 'fan', 'FAN15G2071' => 'fan', 'FAN17G3065' => 'fan', 'FAN19G1376' => 'fan', 'FAN20G0354' => 'fan', 'FAN20G2429' => 'fan', 'FAN20G2658' => 'fan', 'FAN24G2343' => 'fan', 'FAN27G2362' => 'fan', 'FAN28G1765' => 'fan', 'FvH4_1g16020' => 'fve', 'FvH4_2g04890' => 'fve', 'FvH4_2g22270' => 'fve', 'FvH4_4g02630' => 'fve', 'FvH4_4g02640' => 'fve', 'FvH4_6g02650' => 'fve', 'Glyma.02G140600' => 'gma', 'Glyma.03G159900' => 'gma', 'Glyma.05G234800' => 'gma', 'Glyma.07G269600' => 'gma', 'Glyma.08G042300' => 'gma', 'Glyma.10G033500' => 'gma', 'Glyma.10G185200' => 'gma', 'Glyma.17G004300' => 'gma', 'Glyma.19G161900' => 'gma', 'Glyma.20G205100' => 'gma', 'Glyma.20G205200' => 'gma', 'Gohir.A01G139101' => 'ghi', 'Gohir.A02G035600' => 'ghi', 'Gohir.A02G117901' => 'ghi', 'Gohir.A07G210100' => 'ghi', 'Gohir.A07G210200' => 'ghi', 'Gohir.A08G061100' => 'ghi', 'Gohir.A09G223000' => 'ghi', 'Gohir.A09G223100' => 'ghi', 'Gohir.A10G113900' => 'ghi', 'Gohir.A10G114000' => 'ghi', 'Gohir.D02G042300' => 'ghi', 'Gohir.D07G216100' => 'ghi', 'Gohir.D07G216200' => 'ghi', 'Gohir.D08G070400' => 'ghi', 'Gohir.D09G225000' => 'ghi', 'Gohir.D09G225100' => 'ghi', 'Gohir.D10G152300' => 'ghi', 'Gohir.D10G153200' => 'ghi', 'Gohir.D11G133701' => 'ghi', 'Gorai.004G074100' => 'gra', 'Gorai.005G046800' => 'gra', 'Gorai.006G246500' => 'gra', 'Gorai.006G246600' => 'gra', 'Gorai.007G142900' => 'gra', 'Gorai.011G171000' => 'gra', 'Gorai.011G171100' => 'gra', 'Gorai.013G104300' => 'gra', 'Gorai.013G104400' => 'gra', 'GSVIVG01000754001' => 'vvi', 'GSVIVG01000756001' => 'vvi', 'GSVIVG01010903001' => 'vvi', 'GSVIVG01017623001' => 'vvi', 'GSVIVG01018113001' => 'vvi', 'GSVIVG01018116001' => 'vvi', 'GSVIVG01018118001' => 'vvi', 'HanXRQChr03g0076211' => 'han', 'HanXRQChr03g0092431' => 'han', 'HanXRQChr03g0092441' => 'han', 'HanXRQChr03g0092591' => 'han', 'HanXRQChr03g0092671' => 'han', 'HanXRQChr03g0092681' => 'han', 'HanXRQChr03g0092691' => 'han', 'HanXRQChr03g0092701' => 'han', 'HanXRQChr03g0092721' => 'han', 'HanXRQChr03g0092731' => 'han', 'HanXRQChr04g0113681' => 'han', 'HanXRQChr10g0281371' => 'han', 'HanXRQChr11g0337141' => 'han', 'HanXRQChr13g0424521' => 'han', 'HanXRQChr13g0424531' => 'han', 'HanXRQChr13g0424541' => 'han', 'HanXRQChr16g0498221' => 'han', 'Haze_04377' => 'cav', 'Haze_11298' => 'cav', 'Haze_24547' => 'cav', 'Haze_24550' => 'cav', 'Haze_26587' => 'cav', 'Hma1.2p1_0650F.1_g195410' => 'hma', 'Hma1.2p1_0893F.1_g233470' => 'hma', 'HPP92_006508' => 'vpl', 'HPP92_024780' => 'vpl', 'Hund02688' => 'sun', 'Hund09380' => 'sun', 'Hund09381' => 'sun', 'Hund09832' => 'sun', 'Hund09833' => 'sun', 'Hund11351' => 'sun', 'Hund11513' => 'sun', 'Lalb_Chr06g0162591' => 'lal', 'Lalb_Chr06g0162601' => 'lal', 'Lalb_Chr06g0169321' => 'lal', 'Lalb_Chr09g0330951' => 'lal', 'Lalb_Chr16g0387631' => 'lal', 'Lalb_Chr21g0306241' => 'lal', 'Lalb_Chr25g0290051' => 'lal', 'Lalb_Chr25g0290061' => 'lal', 'Lalb_Chr25g0290071' => 'lal', 'Lj1g0003876' => 'lja', 'Lj1P1207T36' => 'lonja', 'Lj2C1156G12' => 'lonja', 'Lj3A793G39' => 'lonja', 'Lj3C580G2' => 'lonja', 'Lj3C780G2' => 'lonja', 'Lj3C780T4' => 'lonja', 'Lj3C793G9' => 'lonja', 'Lj4g0012960' => 'lja', 'Lj5g0021252' => 'lja', 'Lj5g0021484' => 'lja', 'Lj5g0024528' => 'lja', 'Lj6A399T12' => 'lonja', 'Lj6A656G65' => 'lonja', 'Lsat_1_v5_gn_3_125500' => 'lsa', 'Lsat_1_v5_gn_3_125540' => 'lsa', 'Lsat_1_v5_gn_5_72701' => 'lsa', 'Lsat_1_v5_gn_8_91560' => 'lsa', 'Lsat_1_v5_gn_9_9640' => 'lsa', 'Manes.01G200600' => 'mes', 'Manes.01G200700' => 'mes', 'Manes.03G168900' => 'mes', 'Manes.03G169000' => 'mes', 'Manes.05G085801' => 'mes', 'Manes.05G086200' => 'mes', 'Manes.15G036700' => 'mes', 'Manes.15G036900' => 'mes', 'Mapoly0004s0172' => 'mpo', 'Mapoly0023s0001' => 'mpo', 'Mapoly0142s0012' => 'mpo', 'MBI01_g32854_MAGBIO' => 'mbi', 'MBI11_g24427_MAGBIO' => 'mbi', 'MBI11_g47319_MAGBIO' => 'mbi', 'MCO01G433' => 'mco', 'MD00G1187800' => 'mdo', 'MD04G1226500' => 'mdo', 'MD05G1203900' => 'mdo', 'MD10G1191100' => 'mdo', 'MD12G1243500' => 'mdo', 'MD13G1207000' => 'mdo', 'MD13G1207100' => 'mdo', 'MD16G1208600' => 'mdo', 'Medtr1g050352' => 'mtr', 'Medtr1g070385' => 'mtr', 'Medtr1g070450' => 'mtr', 'Medtr1g075200' => 'mtr', 'Medtr1g075250' => 'mtr', 'Medtr1g075260' => 'mtr', 'Medtr1g475250' => 'mtr', 'Medtr4g075450' => 'mtr', 'Medtr7g096300' => 'mtr', 'Medtr8g105110' => 'mtr', 'MELO3C006470.2' => 'cme', 'MELO3C006471.2' => 'cme', 'MELO3C020772.2' => 'cme', 'MELO3C026780.2' => 'cme', 'MELO3C026781.2' => 'cme', 'Migut.D00390' => 'egut', 'Migut.G00435' => 'egut', 'Migut.G00436' => 'egut', 'Migut.G00718' => 'egut', 'MSTRG.21891' => 'ama', 'MSTRG.26910' => 'ama', 'MSTRG.4099' => 'ama', 'MSTRG.9925' => 'ama', 'Nitab4.5_0000165g0010' => 'nta', 'Nitab4.5_0000209g0180' => 'nta', 'Nitab4.5_0000244g0440' => 'nta', 'Nitab4.5_0000525g0220' => 'nta', 'Nitab4.5_0001597g0020' => 'nta', 'Nitab4.5_0001878g0040' => 'nta', 'Nitab4.5_0001878g0060' => 'nta', 'Nitab4.5_0002838g0100' => 'nta', 'Nitab4.5_0002838g0120' => 'nta', 'Nitab4.5_0004798g0030' => 'nta', 'Nitab4.5_0005420g0010' => 'nta', 'Nitab4.5_0005507g0010' => 'nta', 'Nitab4.5_0005574g0020' => 'nta', 'Nitab4.5_0005838g0010' => 'nta', 'Nitab4.5_0010580g0020' => 'nta', 'Nn1g02599' => 'nnu', 'Nn1g02608' => 'nnu', 'Nn3g17742' => 'nnu', 'Nn3g19534' => 'nnu', 'Nn3g19535' => 'nnu', 'Oeu008790.1' => 'oeu', 'Oeu008792.1' => 'oeu', 'Oeu032590.1' => 'oeu', 'Oeu035349.1' => 'oeu', 'Oeu049791.1' => 'oeu', 'Os01g0774500' => 'osa', 'Os03g0628800' => 'osa', 'Os03g0798600' => 'osa', 'Os05g0508800' => 'osa', 'Peaxi162Scf00036g02018' => 'pax', 'Peaxi162Scf00578g00032' => 'pax', 'Peaxi162Scf00578g00317' => 'pax', 'Peaxi162Scf00785g00114' => 'pax', 'Peaxi162Scf00813g00119' => 'pax', 'Peaxi162Scf00906g00227' => 'pax', 'PGR004G0875' => 'pgr', 'PGR004G2424' => 'pgr', 'PGR031G1239' => 'pgr', 'PGR031G2474' => 'pgr', 'PGR044G0423' => 'pgr', 'PGSC0003DMG400001128' => 'stu', 'PGSC0003DMG400007336' => 'stu', 'PGSC0003DMG400016318' => 'stu', 'PGSC0003DMG400016319' => 'stu', 'PGSC0003DMG400018074' => 'stu', 'Phvul.001G157700' => 'pvu', 'Phvul.002G148550' => 'pvu', 'Phvul.002G320200' => 'pvu', 'Phvul.003G089200' => 'pvu', 'Phvul.007G126000' => 'pvu', 'Phvul.007G126100' => 'pvu', 'Phvul.007G178000' => 'pvu', 'Phvul.007G178200' => 'pvu', 'Potri.002G043000' => 'ptr', 'Potri.002G043200' => 'ptr', 'Potri.003G123750' => 'ptr', 'Potri.005G055401' => 'ptr', 'Potri.005G219700' => 'ptr', 'Potri.005G220000' => 'ptr', 'Potri.008G161901' => 'ptr', 'Potri.008G162000' => 'ptr', 'Potri.008G162400' => 'ptr', 'Potri.010G076900' => 'ptr', 'Pp3c12_9180' => 'ppa', 'Pp3c13_19770' => 'ppa', 'Pp3c14_22950' => 'ppa', 'Pp3c16_12160' => 'ppa', 'Pp3c27_7820' => 'ppa', 'Pp3c2_3490' => 'ppa', 'Pp3c3_23700' => 'ppa', 'Pp3c3_36520' => 'ppa', 'Pp3c4_15250' => 'ppa', 'PRCOL_00007002' => 'pco', 'Prupe.1G030600' => 'ppe', 'Prupe.1G030700' => 'ppe', 'Prupe.6G345200' => 'ppe', 'Prupe.8G230300' => 'ppe', 'Prupe.8G230500' => 'ppe', 'Psat3g059600' => 'psa', 'Psat5g200920' => 'psa', 'Psat6g056440' => 'psa', 'Psat6g057360' => 'psa', 'Psat6g134120' => 'psa', 'Psat6g134160' => 'psa', 'Psat7g008640' => 'psa', 'Psat7g185240' => 'psa', 'PSO017G1330' => 'pso', 'PSO063G6097' => 'pso', 'PSO170G0835' => 'pso', 'PSO170G2499' => 'pso', 'PSO210G5058' => 'pso', 'PSO210G6154' => 'pso', 'PSO585G0031' => 'pso', 'PSO832G0264' => 'pso', 'PSO832G4288' => 'pso', 'QL03p027355' => 'qlo', 'QL03p027430' => 'qlo', 'QL04p081380' => 'qlo', 'QL06p015642' => 'qlo', 'QL06p015650' => 'qlo', 'QL06p015686' => 'qlo', 'QL12p042927' => 'qlo', 'QL93p1863_0035' => 'qlo', 'RcHm_v2.0_Chr3g0450581' => 'rch', 'RcHm_v2.0_Chr4g0390371' => 'rch', 'RcHm_v2.0_Chr4g0390381' => 'rch', 'RcHm_v2.0_Chr4g0390491' => 'rch', 'RcHm_v2.0_Chr4g0390501' => 'rch', 'RcHm_v2.0_Chr6g0289231' => 'rch', 'Rhsim04G0190400' => 'rsi', 'Rhsim04G0190500' => 'rsi', 'Rhsim04G0190600' => 'rsi', 'Rhsim13G0031400' => 'rsi', 'Rhsim13G0165600' => 'rsi', 'RhsimUnG0114600' => 'rsi', 'RhsimUnG0114700' => 'rsi', 'Sabra02G0034800' => 'sbr', 'Sabra02G0035100' => 'sbr', 'Sabra05G0168600' => 'sbr', 'Sabra05G0168800' => 'sbr', 'Sabra08G0123700' => 'sbr', 'Sabra10G0031900' => 'sbr', 'Sabra13G0039000' => 'sbr', 'SalBow2G0782' => 'sbo', 'SalBow2G1403' => 'sbo', 'SalBow4G0074' => 'sbo', 'SalBow4G2635' => 'sbo', 'SalBow5G3010' => 'sbo', 'Sc05g0000870' => 'sci', 'Sc05g0000890' => 'sci', 'Sc13g0005000' => 'sci', 'Sc13g0005030' => 'sci', 'Sc19g0003790' => 'sci', 'Sc19g0003800' => 'sci', 'Sed0003467' => 'sed', 'Sed0009355' => 'sed', 'Sed0009894' => 'sed', 'Sed0011972' => 'sed', 'Sed0021483' => 'sed', 'Sed0021750' => 'sed', 'Sed0026279' => 'sed', 'SEGI_05312' => 'sgi', 'SEGI_10112' => 'sgi', 'SEGI_15835' => 'sgi', 'SEGI_30386' => 'sgi', 'SEGI_34122' => 'sgi', 'SEGI_35063' => 'sgi', 'SGA_v2.0_scaffold101G29794' => 'sas', 'SGA_v2.0_scaffold1G00573' => 'sas', 'SGA_v2.0_scaffold79G25637' => 'sas', 'SGA_v2.0_scaffold88G27283' => 'sas', 'SGA_v2.0_scaffold88G27285' => 'sas', 'SGA_v2.0_scaffold88G27331' => 'sas', 'SHI09937' => 'shi', 'SMO119G0302' => 'smo', 'SMO137G0231' => 'smo', 'SMO367G1151' => 'smo', 'Solyc02g082000.3' => 'sly', 'Solyc06g031670.3' => 'sly', 'Solyc06g053810.3' => 'sly', 'Solyc07g025457.1' => 'sly', 'Solyc08g059740.1' => 'sly', 'Solyc08g059750.3' => 'sly', 'Solyc09g083370.3' => 'sly', 'Solyc12g038950.3' => 'sly', 'Sopen02g026630' => 'spe', 'Sopen06g018930' => 'spe', 'Sopen06g018940' => 'spe', 'Sopen08g009460' => 'spe', 'Sopen09g032290' => 'spe', 'Sp1g03080' => 'spa', 'Sp1g03090' => 'spa', 'Sp1g05480' => 'spa', 'Sp2g07860' => 'spa', 'Sp2g08430' => 'spa', 'Sp2g08440' => 'spa', 'Sp2g26200' => 'spa', 'Sp4g13170' => 'spa', 'Sp6g33840' => 'spa', 'SpUn1204_0010' => 'spa', 'TAR365G0908' => 'tar', 'TAR381G1270' => 'tar', 'TAR381G1651' => 'tar', 'TAR625G1131' => 'tar', 'TAR633G0962' => 'tar', 'TAR633G1729' => 'tar', 'TAR633G1864' => 'tar', 'TAR636G0221' => 'tar', 'TAR636G0314' => 'tar', 'TAR636G3202' => 'tar', 'THA.LOC104800805' => 'tha', 'THA.LOC104801096' => 'tha', 'THA.LOC104801555' => 'tha', 'THA.LOC104808491' => 'tha', 'THA.LOC104808595' => 'tha', 'THA.LOC104815985' => 'tha', 'THA.LOC104822250' => 'tha', 'THA.LOC104826071' => 'tha', 'Thecc.01G265200' => 'tca', 'Thecc.01G265300' => 'tca', 'Thecc.01G265700' => 'tca', 'Thecc.03G109100' => 'tca', 'Thecc.04G245900' => 'tca', 'Thecc.04G246000' => 'tca', 'Thhalv10003334m.g' => 'esa', 'Thhalv10005508m.g' => 'esa', 'Thhalv10005643m.g' => 'esa', 'Thhalv10007316m.g' => 'esa', 'Thhalv10009006m.g' => 'esa', 'Thhalv10009309m.g' => 'esa', 'Thhalv10014917m.g' => 'esa', 'Thhalv10014919m.g' => 'esa', 'Thhalv10015393m.g' => 'esa', 'Thhalv10016515m.g' => 'esa', 'Thhalv10029242m.g' => 'esa', 'TPR.G16654' => 'tpr', 'TPR.G20589' => 'tpr', 'TPR.G23029' => 'tpr', 'TPR.G27731' => 'tpr', 'TPR.G28889' => 'tpr', 'TPR.G28899' => 'tpr', 'TPR.G30846' => 'tpr', 'TPR.G5452' => 'tpr', 'TPR.G5713' => 'tpr', 'TPR.G9046' => 'tpr', 'TPR.G9061' => 'tpr', 'TWI09G1075' => 'twi', 'TWI12G0806' => 'twi', 'TWI18G0108' => 'twi', 'TWI53G1361' => 'twi', 'TWI73G0185' => 'twi', 'TWI73G0427' => 'twi', 'unitig_37.g12001' => 'ugi', 'unitig_747.g21660' => 'ugi', 'unitig_748.g7232' => 'ugi', 'unitig_748.g7315' => 'ugi', 'unitig_85.g27262' => 'ugi', 'unitig_92.g28220' => 'ugi', 'vmacro02632' => 'vma', 'vmacro08410' => 'vma', 'vmacro08411' => 'vma', 'vmacro15407' => 'vma', 'VMungo0251G3619' => 'vmu', 'VMungo0720G1204' => 'vmu', 'VMungo0720G1918' => 'vmu', 'VMungo0720G2387' => 'vmu', 'VMungo0720G2961' => 'vmu', 'VMungo1215G2154' => 'vmu', 'VMungo1383G2411' => 'vmu', 'Zm00001eb051130' => 'zma', 'Zm00001eb116830' => 'zma', 'Zm00001eb116850' => 'zma', 'Zm00001eb151740' => 'zma', 'Zm00001eb292360' => 'zma', 'Zm00001eb301640' => 'zma' ), 'gf_id' => 'HOM05D000856', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000856' ), 'data_identifier' => 'HOM05D000856', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000856', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p00010' => 'bna', 'A03p04160' => 'bna', 'A03p17160' => 'bna', 'A04p23370' => 'bna', 'A05p14860' => 'bna', 'A08p37020' => 'bna', 'A09p08050' => 'bna', 'A09p66800' => 'bna', 'A09p67940' => 'bna', 'A10p02680' => 'bna', 'A10p05320' => 'bna', 'Aa31LG1G20560' => 'aar', 'Aa31LG1G20610' => 'aar', 'Aa31LG1G7810' => 'aar', 'Aa31LG5G3590' => 'aar', 'Aa31LG5G6140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3819' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4683' => 'aag', 'Actinidia04480' => 'ach', 'Actinidia05466' => 'ach', 'Actinidia08445' => 'ach', 'Actinidia21170' => 'ach', 'Actinidia24812' => 'ach', 'Actinidia24951' => 'ach', 'Actinidia40088' => 'ach', 'Ah.02g111660' => 'amhyb', 'Ah.11g048900' => 'amhyb', 'Ah.11g049910' => 'amhyb', 'AL1G13870' => 'aly', 'AL1G13880' => 'aly', 'AL1G16760' => 'aly', 'AL390U10020' => 'aly', 'AL4G25520' => 'aly', 'AL6G19890' => 'aly', 'AL6G19900' => 'aly', 'AL6G19910' => 'aly', 'AL8G40100' => 'aly', 'Aqoxy2G03562' => 'aox', 'Aqoxy5G00316' => 'aox', 'Aqoxy5G00926' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1628KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1H403S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2FU6SJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.882I6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8YRY2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YN1SN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AF70II' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZA8L1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F916KL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHRD8H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KTZ8QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S22EMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8M29T' => 'arhy', 'AT1G04270' => 'ath', 'AT1G04280' => 'ath', 'AT1G06750' => 'ath', 'AT1G33850' => 'ath', 'AT2G30630' => 'ath', 'AT5G09490' => 'ath', 'AT5G09500' => 'ath', 'AT5G09510' => 'ath', 'AT5G43640' => 'ath', 'AT5G63070' => 'ath', 'ATR0605G315' => 'atr', 'Atru.chr11.175' => 'acertr', 'Atru.chr11.653' => 'acertr', 'Atru.chr3.1616' => 'acertr', 'Atru.chr4.2230' => 'acertr', 'Atru.chr4.2232' => 'acertr', 'Atru.chr5.1598' => 'acertr', 'Atru.chr5.1600' => 'acertr', 'Atru.chr5.2188' => 'acertr', 'AUR62008326' => 'cqu', 'AUR62011922' => 'cqu', 'AUR62011924' => 'cqu', 'AUR62021771' => 'cqu', 'AUR62032237' => 'cqu', 'AUR62032240' => 'cqu', 'BcaB01g05572' => 'bca', 'BcaB02g10337' => 'bca', 'BcaB04g19944' => 'bca', 'BcaB05g21548' => 'bca', 'BcaB05g21549' => 'bca', 'BcaB05g23227' => 'bca', 'BcaB06g26256' => 'bca', 'BcaB06g26257' => 'bca', 'BcaB06g28379' => 'bca', 'BcaC02g11159' => 'bca', 'BcaC03g13258' => 'bca', 'BcaC03g13259' => 'bca', 'BcaC05g24456' => 'bca', 'BcaC05g24457' => 'bca', 'BcaC07g36922' => 'bca', 'BcaC07g36923' => 'bca', 'BcaC07g42050' => 'bca', 'BcaC07g42176' => 'bca', 'BcaC07g42195' => 'bca', 'BcaC07g42196' => 'bca', 'BcaNung06674' => 'bca', 'BolC2t06351H' => 'bol', 'BolC2t06352H' => 'bol', 'BolC3t12993H' => 'bol', 'BolC4t23525H' => 'bol', 'BolC4t27475H' => 'bol', 'BolC5t29025H' => 'bol', 'BolC5t29026H' => 'bol', 'BolC8t46898H' => 'bol', 'BolC8t46899H' => 'bol', 'BolC8t52630H' => 'bol', 'BolC8t52765H' => 'bol', 'BolC9t53824H' => 'bol', 'BraA03t09760Z' => 'bra', 'BraA03t10990Z' => 'bra', 'BraA05t20413Z' => 'bra', 'BraA08t35602Z' => 'bra', 'BraA09t36458Z' => 'bra', 'BraA09t42018Z' => 'bra', 'BraA09t42129Z' => 'bra', 'BraA10t42536Z' => 'bra', 'BraA10t42537Z' => 'bra', 'C01p10690' => 'bna', 'C02p03890' => 'bna', 'C02p03900' => 'bna', 'C03p04620' => 'bna', 'C04p19870' => 'bna', 'C04p59670' => 'bna', 'C05p02460' => 'bna', 'C05p02470' => 'bna', 'C08p00980' => 'bna', 'C08p00990' => 'bna', 'C08p51030' => 'bna', 'C08p52360' => 'bna', 'C09p09120' => 'bna', 'CAN.G19.15' => 'can', 'CAN.G251.10' => 'can', 'CAN.G251.9' => 'can', 'CAN.G398.24' => 'can', 'CAN.G410.32' => 'can', 'CAN.G881.2' => 'can', 'CANSAT01G3025' => 'cansat', 'CANSAT78G1211' => 'cansat', 'CANSAT78G1218' => 'cansat', 'CANSAT78G1521' => 'cansat', 'CANSAT78G1670' => 'cansat', 'CARHR003600' => 'chi', 'CARHR003610' => 'chi', 'CARHR006290' => 'chi', 'CARHR006430' => 'chi', 'CARHR124110' => 'chi', 'CARHR203870' => 'chi', 'CARHR203880' => 'chi', 'CARHR203890' => 'chi', 'CARHR276880' => 'chi', 'Carub.0001s0346' => 'cru', 'Carub.0001s0347' => 'cru', 'Carub.0001s0607' => 'cru', 'Carub.0003s2768' => 'cru', 'Carub.0003s2769' => 'cru', 'Carub.0004s1178' => 'cru', 'Carub.0006s0806' => 'cru', 'Carub.0006s0807' => 'cru', 'Carub.0006s0808' => 'cru', 'Carub.0008s0501' => 'cru', 'Carub.0008s2379' => 'cru', 'Ca_08655_v3' => 'car', 'Ca_08922_v3' => 'car', 'Ca_08923_v3' => 'car', 'Ca_09119_v3' => 'car', 'Ca_09703_v3' => 'car', 'Ca_09705_v3' => 'car', 'Ca_09835_v3' => 'car', 'Ca_26403_v3' => 'car', 'Ca_30719_v3' => 'car', 'CBR_g17958' => 'cbr', 'CBR_g40516' => 'cbr', 'Cc00_g05350' => 'ccan', 'Cc01_g18690' => 'ccan', 'Cc03_g04830' => 'ccan', 'Cc03_g04850' => 'ccan', 'CDE02G4469' => 'cde', 'CDE06G0883' => 'cde', 'CDE06G1295' => 'cde', 'CDE06G1390' => 'cde', 'CDE07G0584' => 'cde', 'CDE07G1084' => 'cde', 'CDE08G1259' => 'cde', 'Cfa002341' => 'cfa', 'Cfa024337' => 'cfa', 'Ciclev10004749m.g' => 'ccl', 'Ciclev10006127m.g' => 'ccl', 'Ciclev10019720m.g' => 'ccl', 'Ciclev10022652m.g' => 'ccl', 'CiPaw.01G190400' => 'cil', 'CiPaw.01G190500' => 'cil', 'CiPaw.02G116400' => 'cil', 'CiPaw.02G116500' => 'cil', 'CiPaw.04G183000' => 'cil', 'CiPaw.04G183300' => 'cil', 'ClCG05G004610' => 'cla', 'ClCG05G004620' => 'cla', 'ClCG06G006730' => 'cla', 'ClCG06G006740' => 'cla', 'ClCG11G003690' => 'cla', 'COL.COLO4_08276' => 'col', 'COL.COLO4_08277' => 'col', 'COL.COLO4_15787' => 'col', 'COL.COLO4_15789' => 'col', 'Cpa.g.c44815' => 'cpa', 'Cpa.g.sc52.144' => 'cpa', 'Cpa.g.sc58.46' => 'cpa', 'Cpa.g.sc58.47' => 'cpa', 'Cre08.g360900' => 'cre', 'CsaV3_2G013030' => 'csa', 'CsaV3_2G013050' => 'csa', 'CsaV3_2G015620' => 'csa', 'CsaV3_3G012590' => 'csa', 'CsaV3_3G012600' => 'csa', 'CSS0001641' => 'camsi', 'CSS0008310' => 'camsi', 'CSS0013011' => 'camsi', 'CSS0017147' => 'camsi', 'CSS0022970' => 'camsi', 'CSS0025655' => 'camsi', 'CSS0028665' => 'camsi', 'CSS0029117' => 'camsi', 'CSS0032024' => 'camsi', 'CSS0039681' => 'camsi', 'CSS0046516' => 'camsi', 'CSS0050307' => 'camsi', 'DCAR_005871' => 'dca', 'DCAR_007342' => 'dca', 'DCAR_024228' => 'dca', 'DCAR_027277' => 'dca', 'DCAR_030718' => 'dca', 'Dinv20287' => 'din', 'Dinv22461' => 'din', 'Dinv22464' => 'din', 'Dinv29912' => 'din', 'Dinv29913' => 'din', 'Dinv34580' => 'din', 'Dinv34582' => 'din', 'Dinv44632' => 'din', 'Duzib052G0266' => 'dzi', 'Duzib133G0907' => 'dzi', 'Duzib133G1034' => 'dzi', 'Duzib138G0207' => 'dzi', 'Duzib138G0491' => 'dzi', 'Duzib151G0812' => 'dzi', 'Duzib151G1166' => 'dzi', 'Duzib168G0192' => 'dzi', 'Duzib211G0077' => 'dzi', 'Duzib212G0429' => 'dzi', 'Duzib212G0472' => 'dzi', 'ECA233G2617' => 'eca', 'ECA236G4188' => 'eca', 'ECA240G0936' => 'eca', 'ECA240G1129' => 'eca', 'ECA247G0623' => 'eca', 'EL10Ac5g10451' => 'bvu', 'EL10Ac5g10453' => 'bvu', 'EL10Ac5g10894' => 'bvu', 'Eucgr.H00192' => 'egr', 'Eucgr.H00193' => 'egr', 'Eucgr.H00194' => 'egr', 'Eucgr.J01562' => 'egr', 'Eucgr.K03301' => 'egr', 'FAN02G0632' => 'fan', 'FAN05G5378' => 'fan', 'FAN09G3247' => 'fan', 'FAN12G0435' => 'fan', 'FAN12G2426' => 'fan', 'FAN14G1707' => 'fan', 'FAN14G4725' => 'fan', 'FAN15G2071' => 'fan', 'FAN17G3065' => 'fan', 'FAN19G1376' => 'fan', 'FAN20G0354' => 'fan', 'FAN20G2429' => 'fan', 'FAN20G2658' => 'fan', 'FAN24G2343' => 'fan', 'FAN27G2362' => 'fan', 'FAN28G1765' => 'fan', 'FvH4_1g16020' => 'fve', 'FvH4_2g04890' => 'fve', 'FvH4_2g22270' => 'fve', 'FvH4_4g02630' => 'fve', 'FvH4_4g02640' => 'fve', 'FvH4_6g02650' => 'fve', 'Glyma.02G140600' => 'gma', 'Glyma.03G159900' => 'gma', 'Glyma.05G234800' => 'gma', 'Glyma.07G269600' => 'gma', 'Glyma.08G042300' => 'gma', 'Glyma.10G033500' => 'gma', 'Glyma.10G185200' => 'gma', 'Glyma.17G004300' => 'gma', 'Glyma.19G161900' => 'gma', 'Glyma.20G205100' => 'gma', 'Glyma.20G205200' => 'gma', 'Gohir.A01G139101' => 'ghi', 'Gohir.A02G035600' => 'ghi', 'Gohir.A02G117901' => 'ghi', 'Gohir.A07G210100' => 'ghi', 'Gohir.A07G210200' => 'ghi', 'Gohir.A08G061100' => 'ghi', 'Gohir.A09G223000' => 'ghi', 'Gohir.A09G223100' => 'ghi', 'Gohir.A10G113900' => 'ghi', 'Gohir.A10G114000' => 'ghi', 'Gohir.D02G042300' => 'ghi', 'Gohir.D07G216100' => 'ghi', 'Gohir.D07G216200' => 'ghi', 'Gohir.D08G070400' => 'ghi', 'Gohir.D09G225000' => 'ghi', 'Gohir.D09G225100' => 'ghi', 'Gohir.D10G152300' => 'ghi', 'Gohir.D10G153200' => 'ghi', 'Gohir.D11G133701' => 'ghi', 'Gorai.004G074100' => 'gra', 'Gorai.005G046800' => 'gra', 'Gorai.006G246500' => 'gra', 'Gorai.006G246600' => 'gra', 'Gorai.007G142900' => 'gra', 'Gorai.011G171000' => 'gra', 'Gorai.011G171100' => 'gra', 'Gorai.013G104300' => 'gra', 'Gorai.013G104400' => 'gra', 'GSVIVG01000754001' => 'vvi', 'GSVIVG01000756001' => 'vvi', 'GSVIVG01010903001' => 'vvi', 'GSVIVG01017623001' => 'vvi', 'GSVIVG01018113001' => 'vvi', 'GSVIVG01018116001' => 'vvi', 'GSVIVG01018118001' => 'vvi', 'HanXRQChr03g0076211' => 'han', 'HanXRQChr03g0092431' => 'han', 'HanXRQChr03g0092441' => 'han', 'HanXRQChr03g0092591' => 'han', 'HanXRQChr03g0092671' => 'han', 'HanXRQChr03g0092681' => 'han', 'HanXRQChr03g0092691' => 'han', 'HanXRQChr03g0092701' => 'han', 'HanXRQChr03g0092721' => 'han', 'HanXRQChr03g0092731' => 'han', 'HanXRQChr04g0113681' => 'han', 'HanXRQChr10g0281371' => 'han', 'HanXRQChr11g0337141' => 'han', 'HanXRQChr13g0424521' => 'han', 'HanXRQChr13g0424531' => 'han', 'HanXRQChr13g0424541' => 'han', 'HanXRQChr16g0498221' => 'han', 'Haze_04377' => 'cav', 'Haze_11298' => 'cav', 'Haze_24547' => 'cav', 'Haze_24550' => 'cav', 'Haze_26587' => 'cav', 'Hma1.2p1_0650F.1_g195410' => 'hma', 'Hma1.2p1_0893F.1_g233470' => 'hma', 'HPP92_006508' => 'vpl', 'HPP92_024780' => 'vpl', 'Hund02688' => 'sun', 'Hund09380' => 'sun', 'Hund09381' => 'sun', 'Hund09832' => 'sun', 'Hund09833' => 'sun', 'Hund11351' => 'sun', 'Hund11513' => 'sun', 'Lalb_Chr06g0162591' => 'lal', 'Lalb_Chr06g0162601' => 'lal', 'Lalb_Chr06g0169321' => 'lal', 'Lalb_Chr09g0330951' => 'lal', 'Lalb_Chr16g0387631' => 'lal', 'Lalb_Chr21g0306241' => 'lal', 'Lalb_Chr25g0290051' => 'lal', 'Lalb_Chr25g0290061' => 'lal', 'Lalb_Chr25g0290071' => 'lal', 'Lj1g0003876' => 'lja', 'Lj1P1207T36' => 'lonja', 'Lj2C1156G12' => 'lonja', 'Lj3A793G39' => 'lonja', 'Lj3C580G2' => 'lonja', 'Lj3C780G2' => 'lonja', 'Lj3C780T4' => 'lonja', 'Lj3C793G9' => 'lonja', 'Lj4g0012960' => 'lja', 'Lj5g0021252' => 'lja', 'Lj5g0021484' => 'lja', 'Lj5g0024528' => 'lja', 'Lj6A399T12' => 'lonja', 'Lj6A656G65' => 'lonja', 'Lsat_1_v5_gn_3_125500' => 'lsa', 'Lsat_1_v5_gn_3_125540' => 'lsa', 'Lsat_1_v5_gn_5_72701' => 'lsa', 'Lsat_1_v5_gn_8_91560' => 'lsa', 'Lsat_1_v5_gn_9_9640' => 'lsa', 'Manes.01G200600' => 'mes', 'Manes.01G200700' => 'mes', 'Manes.03G168900' => 'mes', 'Manes.03G169000' => 'mes', 'Manes.05G085801' => 'mes', 'Manes.05G086200' => 'mes', 'Manes.15G036700' => 'mes', 'Manes.15G036900' => 'mes', 'Mapoly0004s0172' => 'mpo', 'Mapoly0023s0001' => 'mpo', 'Mapoly0142s0012' => 'mpo', 'MBI01_g32854_MAGBIO' => 'mbi', 'MBI11_g24427_MAGBIO' => 'mbi', 'MBI11_g47319_MAGBIO' => 'mbi', 'MCO01G433' => 'mco', 'MD00G1187800' => 'mdo', 'MD04G1226500' => 'mdo', 'MD05G1203900' => 'mdo', 'MD10G1191100' => 'mdo', 'MD12G1243500' => 'mdo', 'MD13G1207000' => 'mdo', 'MD13G1207100' => 'mdo', 'MD16G1208600' => 'mdo', 'Medtr1g050352' => 'mtr', 'Medtr1g070385' => 'mtr', 'Medtr1g070450' => 'mtr', 'Medtr1g075200' => 'mtr', 'Medtr1g075250' => 'mtr', 'Medtr1g075260' => 'mtr', 'Medtr1g475250' => 'mtr', 'Medtr4g075450' => 'mtr', 'Medtr7g096300' => 'mtr', 'Medtr8g105110' => 'mtr', 'MELO3C006470.2' => 'cme', 'MELO3C006471.2' => 'cme', 'MELO3C020772.2' => 'cme', 'MELO3C026780.2' => 'cme', 'MELO3C026781.2' => 'cme', 'Migut.D00390' => 'egut', 'Migut.G00435' => 'egut', 'Migut.G00436' => 'egut', 'Migut.G00718' => 'egut', 'MSTRG.21891' => 'ama', 'MSTRG.26910' => 'ama', 'MSTRG.4099' => 'ama', 'MSTRG.9925' => 'ama', 'Nitab4.5_0000165g0010' => 'nta', 'Nitab4.5_0000209g0180' => 'nta', 'Nitab4.5_0000244g0440' => 'nta', 'Nitab4.5_0000525g0220' => 'nta', 'Nitab4.5_0001597g0020' => 'nta', 'Nitab4.5_0001878g0040' => 'nta', 'Nitab4.5_0001878g0060' => 'nta', 'Nitab4.5_0002838g0100' => 'nta', 'Nitab4.5_0002838g0120' => 'nta', 'Nitab4.5_0004798g0030' => 'nta', 'Nitab4.5_0005420g0010' => 'nta', 'Nitab4.5_0005507g0010' => 'nta', 'Nitab4.5_0005574g0020' => 'nta', 'Nitab4.5_0005838g0010' => 'nta', 'Nitab4.5_0010580g0020' => 'nta', 'Nn1g02599' => 'nnu', 'Nn1g02608' => 'nnu', 'Nn3g17742' => 'nnu', 'Nn3g19534' => 'nnu', 'Nn3g19535' => 'nnu', 'Oeu008790.1' => 'oeu', 'Oeu008792.1' => 'oeu', 'Oeu032590.1' => 'oeu', 'Oeu035349.1' => 'oeu', 'Oeu049791.1' => 'oeu', 'Os01g0774500' => 'osa', 'Os03g0628800' => 'osa', 'Os03g0798600' => 'osa', 'Os05g0508800' => 'osa', 'Peaxi162Scf00036g02018' => 'pax', 'Peaxi162Scf00578g00032' => 'pax', 'Peaxi162Scf00578g00317' => 'pax', 'Peaxi162Scf00785g00114' => 'pax', 'Peaxi162Scf00813g00119' => 'pax', 'Peaxi162Scf00906g00227' => 'pax', 'PGR004G0875' => 'pgr', 'PGR004G2424' => 'pgr', 'PGR031G1239' => 'pgr', 'PGR031G2474' => 'pgr', 'PGR044G0423' => 'pgr', 'PGSC0003DMG400001128' => 'stu', 'PGSC0003DMG400007336' => 'stu', 'PGSC0003DMG400016318' => 'stu', 'PGSC0003DMG400016319' => 'stu', 'PGSC0003DMG400018074' => 'stu', 'Phvul.001G157700' => 'pvu', 'Phvul.002G148550' => 'pvu', 'Phvul.002G320200' => 'pvu', 'Phvul.003G089200' => 'pvu', 'Phvul.007G126000' => 'pvu', 'Phvul.007G126100' => 'pvu', 'Phvul.007G178000' => 'pvu', 'Phvul.007G178200' => 'pvu', 'Potri.002G043000' => 'ptr', 'Potri.002G043200' => 'ptr', 'Potri.003G123750' => 'ptr', 'Potri.005G055401' => 'ptr', 'Potri.005G219700' => 'ptr', 'Potri.005G220000' => 'ptr', 'Potri.008G161901' => 'ptr', 'Potri.008G162000' => 'ptr', 'Potri.008G162400' => 'ptr', 'Potri.010G076900' => 'ptr', 'Pp3c12_9180' => 'ppa', 'Pp3c13_19770' => 'ppa', 'Pp3c14_22950' => 'ppa', 'Pp3c16_12160' => 'ppa', 'Pp3c27_7820' => 'ppa', 'Pp3c2_3490' => 'ppa', 'Pp3c3_23700' => 'ppa', 'Pp3c3_36520' => 'ppa', 'Pp3c4_15250' => 'ppa', 'PRCOL_00007002' => 'pco', 'Prupe.1G030600' => 'ppe', 'Prupe.1G030700' => 'ppe', 'Prupe.6G345200' => 'ppe', 'Prupe.8G230300' => 'ppe', 'Prupe.8G230500' => 'ppe', 'Psat3g059600' => 'psa', 'Psat5g200920' => 'psa', 'Psat6g056440' => 'psa', 'Psat6g057360' => 'psa', 'Psat6g134120' => 'psa', 'Psat6g134160' => 'psa', 'Psat7g008640' => 'psa', 'Psat7g185240' => 'psa', 'PSO017G1330' => 'pso', 'PSO063G6097' => 'pso', 'PSO170G0835' => 'pso', 'PSO170G2499' => 'pso', 'PSO210G5058' => 'pso', 'PSO210G6154' => 'pso', 'PSO585G0031' => 'pso', 'PSO832G0264' => 'pso', 'PSO832G4288' => 'pso', 'QL03p027355' => 'qlo', 'QL03p027430' => 'qlo', 'QL04p081380' => 'qlo', 'QL06p015642' => 'qlo', 'QL06p015650' => 'qlo', 'QL06p015686' => 'qlo', 'QL12p042927' => 'qlo', 'QL93p1863_0035' => 'qlo', 'RcHm_v2.0_Chr3g0450581' => 'rch', 'RcHm_v2.0_Chr4g0390371' => 'rch', 'RcHm_v2.0_Chr4g0390381' => 'rch', 'RcHm_v2.0_Chr4g0390491' => 'rch', 'RcHm_v2.0_Chr4g0390501' => 'rch', 'RcHm_v2.0_Chr6g0289231' => 'rch', 'Rhsim04G0190400' => 'rsi', 'Rhsim04G0190500' => 'rsi', 'Rhsim04G0190600' => 'rsi', 'Rhsim13G0031400' => 'rsi', 'Rhsim13G0165600' => 'rsi', 'RhsimUnG0114600' => 'rsi', 'RhsimUnG0114700' => 'rsi', 'Sabra02G0034800' => 'sbr', 'Sabra02G0035100' => 'sbr', 'Sabra05G0168600' => 'sbr', 'Sabra05G0168800' => 'sbr', 'Sabra08G0123700' => 'sbr', 'Sabra10G0031900' => 'sbr', 'Sabra13G0039000' => 'sbr', 'SalBow2G0782' => 'sbo', 'SalBow2G1403' => 'sbo', 'SalBow4G0074' => 'sbo', 'SalBow4G2635' => 'sbo', 'SalBow5G3010' => 'sbo', 'Sc05g0000870' => 'sci', 'Sc05g0000890' => 'sci', 'Sc13g0005000' => 'sci', 'Sc13g0005030' => 'sci', 'Sc19g0003790' => 'sci', 'Sc19g0003800' => 'sci', 'Sed0003467' => 'sed', 'Sed0009355' => 'sed', 'Sed0009894' => 'sed', 'Sed0011972' => 'sed', 'Sed0021483' => 'sed', 'Sed0021750' => 'sed', 'Sed0026279' => 'sed', 'SEGI_05312' => 'sgi', 'SEGI_10112' => 'sgi', 'SEGI_15835' => 'sgi', 'SEGI_30386' => 'sgi', 'SEGI_34122' => 'sgi', 'SEGI_35063' => 'sgi', 'SGA_v2.0_scaffold101G29794' => 'sas', 'SGA_v2.0_scaffold1G00573' => 'sas', 'SGA_v2.0_scaffold79G25637' => 'sas', 'SGA_v2.0_scaffold88G27283' => 'sas', 'SGA_v2.0_scaffold88G27285' => 'sas', 'SGA_v2.0_scaffold88G27331' => 'sas', 'SHI09937' => 'shi', 'SMO119G0302' => 'smo', 'SMO137G0231' => 'smo', 'SMO367G1151' => 'smo', 'Solyc02g082000.3' => 'sly', 'Solyc06g031670.3' => 'sly', 'Solyc06g053810.3' => 'sly', 'Solyc07g025457.1' => 'sly', 'Solyc08g059740.1' => 'sly', 'Solyc08g059750.3' => 'sly', 'Solyc09g083370.3' => 'sly', 'Solyc12g038950.3' => 'sly', 'Sopen02g026630' => 'spe', 'Sopen06g018930' => 'spe', 'Sopen06g018940' => 'spe', 'Sopen08g009460' => 'spe', 'Sopen09g032290' => 'spe', 'Sp1g03080' => 'spa', 'Sp1g03090' => 'spa', 'Sp1g05480' => 'spa', 'Sp2g07860' => 'spa', 'Sp2g08430' => 'spa', 'Sp2g08440' => 'spa', 'Sp2g26200' => 'spa', 'Sp4g13170' => 'spa', 'Sp6g33840' => 'spa', 'SpUn1204_0010' => 'spa', 'TAR365G0908' => 'tar', 'TAR381G1270' => 'tar', 'TAR381G1651' => 'tar', 'TAR625G1131' => 'tar', 'TAR633G0962' => 'tar', 'TAR633G1729' => 'tar', 'TAR633G1864' => 'tar', 'TAR636G0221' => 'tar', 'TAR636G0314' => 'tar', 'TAR636G3202' => 'tar', 'THA.LOC104800805' => 'tha', 'THA.LOC104801096' => 'tha', 'THA.LOC104801555' => 'tha', 'THA.LOC104808491' => 'tha', 'THA.LOC104808595' => 'tha', 'THA.LOC104815985' => 'tha', 'THA.LOC104822250' => 'tha', 'THA.LOC104826071' => 'tha', 'Thecc.01G265200' => 'tca', 'Thecc.01G265300' => 'tca', 'Thecc.01G265700' => 'tca', 'Thecc.03G109100' => 'tca', 'Thecc.04G245900' => 'tca', 'Thecc.04G246000' => 'tca', 'Thhalv10003334m.g' => 'esa', 'Thhalv10005508m.g' => 'esa', 'Thhalv10005643m.g' => 'esa', 'Thhalv10007316m.g' => 'esa', 'Thhalv10009006m.g' => 'esa', 'Thhalv10009309m.g' => 'esa', 'Thhalv10014917m.g' => 'esa', 'Thhalv10014919m.g' => 'esa', 'Thhalv10015393m.g' => 'esa', 'Thhalv10016515m.g' => 'esa', 'Thhalv10029242m.g' => 'esa', 'TPR.G16654' => 'tpr', 'TPR.G20589' => 'tpr', 'TPR.G23029' => 'tpr', 'TPR.G27731' => 'tpr', 'TPR.G28889' => 'tpr', 'TPR.G28899' => 'tpr', 'TPR.G30846' => 'tpr', 'TPR.G5452' => 'tpr', 'TPR.G5713' => 'tpr', 'TPR.G9046' => 'tpr', 'TPR.G9061' => 'tpr', 'TWI09G1075' => 'twi', 'TWI12G0806' => 'twi', 'TWI18G0108' => 'twi', 'TWI53G1361' => 'twi', 'TWI73G0185' => 'twi', 'TWI73G0427' => 'twi', 'unitig_37.g12001' => 'ugi', 'unitig_747.g21660' => 'ugi', 'unitig_748.g7232' => 'ugi', 'unitig_748.g7315' => 'ugi', 'unitig_85.g27262' => 'ugi', 'unitig_92.g28220' => 'ugi', 'vmacro02632' => 'vma', 'vmacro08410' => 'vma', 'vmacro08411' => 'vma', 'vmacro15407' => 'vma', 'VMungo0251G3619' => 'vmu', 'VMungo0720G1204' => 'vmu', 'VMungo0720G1918' => 'vmu', 'VMungo0720G2387' => 'vmu', 'VMungo0720G2961' => 'vmu', 'VMungo1215G2154' => 'vmu', 'VMungo1383G2411' => 'vmu', 'Zm00001eb051130' => 'zma', 'Zm00001eb116830' => 'zma', 'Zm00001eb116850' => 'zma', 'Zm00001eb151740' => 'zma', 'Zm00001eb292360' => 'zma', 'Zm00001eb301640' => 'zma' ) $gf_id = 'HOM05D000856' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000856' ) $data_identifier = 'HOM05D000856' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 13, 'ath' => (int) 10, 'atr' => (int) 1, 'acertr' => (int) 8, 'cqu' => (int) 6, 'bca' => (int) 21, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 11, 'car' => (int) 9, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 8, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 5, 'fan' => (int) 16, 'fve' => (int) 6, 'gma' => (int) 11, 'ghi' => (int) 19, 'gra' => (int) 9, 'vvi' => (int) 7, 'han' => (int) 17, 'cav' => (int) 5, 'hma' => (int) 2, 'vpl' => (int) 2, 'sun' => (int) 7, 'lal' => (int) 9, 'lja' => (int) 5, 'lonja' => (int) 9, 'lsa' => (int) 5, 'mes' => (int) 8, 'mpo' => (int) 3, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 10, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 15, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 9, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 9, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 6, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 5, 'spa' => (int) 10, 'tar' => (int) 10, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 11, 'tpr' => (int) 11, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 4, 'vmu' => (int) 7, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb301640' $species_info = array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ) $local_species = 'lal' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000856', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p00010' => 'bna', 'A03p04160' => 'bna', 'A03p17160' => 'bna', 'A04p23370' => 'bna', 'A05p14860' => 'bna', 'A08p37020' => 'bna', 'A09p08050' => 'bna', 'A09p66800' => 'bna', 'A09p67940' => 'bna', 'A10p02680' => 'bna', 'A10p05320' => 'bna', 'Aa31LG1G20560' => 'aar', 'Aa31LG1G20610' => 'aar', 'Aa31LG1G7810' => 'aar', 'Aa31LG5G3590' => 'aar', 'Aa31LG5G6140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3819' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4683' => 'aag', 'Actinidia04480' => 'ach', 'Actinidia05466' => 'ach', 'Actinidia08445' => 'ach', 'Actinidia21170' => 'ach', 'Actinidia24812' => 'ach', 'Actinidia24951' => 'ach', 'Actinidia40088' => 'ach', 'Ah.02g111660' => 'amhyb', 'Ah.11g048900' => 'amhyb', 'Ah.11g049910' => 'amhyb', 'AL1G13870' => 'aly', 'AL1G13880' => 'aly', 'AL1G16760' => 'aly', 'AL390U10020' => 'aly', 'AL4G25520' => 'aly', 'AL6G19890' => 'aly', 'AL6G19900' => 'aly', 'AL6G19910' => 'aly', 'AL8G40100' => 'aly', 'Aqoxy2G03562' => 'aox', 'Aqoxy5G00316' => 'aox', 'Aqoxy5G00926' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1628KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1H403S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2FU6SJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.882I6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8YRY2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YN1SN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AF70II' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZA8L1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F916KL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHRD8H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KTZ8QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S22EMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8M29T' => 'arhy', 'AT1G04270' => 'ath', 'AT1G04280' => 'ath', 'AT1G06750' => 'ath', 'AT1G33850' => 'ath', 'AT2G30630' => 'ath', 'AT5G09490' => 'ath', 'AT5G09500' => 'ath', 'AT5G09510' => 'ath', 'AT5G43640' => 'ath', 'AT5G63070' => 'ath', 'ATR0605G315' => 'atr', 'Atru.chr11.175' => 'acertr', 'Atru.chr11.653' => 'acertr', 'Atru.chr3.1616' => 'acertr', 'Atru.chr4.2230' => 'acertr', 'Atru.chr4.2232' => 'acertr', 'Atru.chr5.1598' => 'acertr', 'Atru.chr5.1600' => 'acertr', 'Atru.chr5.2188' => 'acertr', 'AUR62008326' => 'cqu', 'AUR62011922' => 'cqu', 'AUR62011924' => 'cqu', 'AUR62021771' => 'cqu', 'AUR62032237' => 'cqu', 'AUR62032240' => 'cqu', 'BcaB01g05572' => 'bca', 'BcaB02g10337' => 'bca', 'BcaB04g19944' => 'bca', 'BcaB05g21548' => 'bca', 'BcaB05g21549' => 'bca', 'BcaB05g23227' => 'bca', 'BcaB06g26256' => 'bca', 'BcaB06g26257' => 'bca', 'BcaB06g28379' => 'bca', 'BcaC02g11159' => 'bca', 'BcaC03g13258' => 'bca', 'BcaC03g13259' => 'bca', 'BcaC05g24456' => 'bca', 'BcaC05g24457' => 'bca', 'BcaC07g36922' => 'bca', 'BcaC07g36923' => 'bca', 'BcaC07g42050' => 'bca', 'BcaC07g42176' => 'bca', 'BcaC07g42195' => 'bca', 'BcaC07g42196' => 'bca', 'BcaNung06674' => 'bca', 'BolC2t06351H' => 'bol', 'BolC2t06352H' => 'bol', 'BolC3t12993H' => 'bol', 'BolC4t23525H' => 'bol', 'BolC4t27475H' => 'bol', 'BolC5t29025H' => 'bol', 'BolC5t29026H' => 'bol', 'BolC8t46898H' => 'bol', 'BolC8t46899H' => 'bol', 'BolC8t52630H' => 'bol', 'BolC8t52765H' => 'bol', 'BolC9t53824H' => 'bol', 'BraA03t09760Z' => 'bra', 'BraA03t10990Z' => 'bra', 'BraA05t20413Z' => 'bra', 'BraA08t35602Z' => 'bra', 'BraA09t36458Z' => 'bra', 'BraA09t42018Z' => 'bra', 'BraA09t42129Z' => 'bra', 'BraA10t42536Z' => 'bra', 'BraA10t42537Z' => 'bra', 'C01p10690' => 'bna', 'C02p03890' => 'bna', 'C02p03900' => 'bna', 'C03p04620' => 'bna', 'C04p19870' => 'bna', 'C04p59670' => 'bna', 'C05p02460' => 'bna', 'C05p02470' => 'bna', 'C08p00980' => 'bna', 'C08p00990' => 'bna', 'C08p51030' => 'bna', 'C08p52360' => 'bna', 'C09p09120' => 'bna', 'CAN.G19.15' => 'can', 'CAN.G251.10' => 'can', 'CAN.G251.9' => 'can', 'CAN.G398.24' => 'can', 'CAN.G410.32' => 'can', 'CAN.G881.2' => 'can', 'CANSAT01G3025' => 'cansat', 'CANSAT78G1211' => 'cansat', 'CANSAT78G1218' => 'cansat', 'CANSAT78G1521' => 'cansat', 'CANSAT78G1670' => 'cansat', 'CARHR003600' => 'chi', 'CARHR003610' => 'chi', 'CARHR006290' => 'chi', 'CARHR006430' => 'chi', 'CARHR124110' => 'chi', 'CARHR203870' => 'chi', 'CARHR203880' => 'chi', 'CARHR203890' => 'chi', 'CARHR276880' => 'chi', 'Carub.0001s0346' => 'cru', 'Carub.0001s0347' => 'cru', 'Carub.0001s0607' => 'cru', 'Carub.0003s2768' => 'cru', 'Carub.0003s2769' => 'cru', 'Carub.0004s1178' => 'cru', 'Carub.0006s0806' => 'cru', 'Carub.0006s0807' => 'cru', 'Carub.0006s0808' => 'cru', 'Carub.0008s0501' => 'cru', 'Carub.0008s2379' => 'cru', 'Ca_08655_v3' => 'car', 'Ca_08922_v3' => 'car', 'Ca_08923_v3' => 'car', 'Ca_09119_v3' => 'car', 'Ca_09703_v3' => 'car', 'Ca_09705_v3' => 'car', 'Ca_09835_v3' => 'car', 'Ca_26403_v3' => 'car', 'Ca_30719_v3' => 'car', 'CBR_g17958' => 'cbr', 'CBR_g40516' => 'cbr', 'Cc00_g05350' => 'ccan', 'Cc01_g18690' => 'ccan', 'Cc03_g04830' => 'ccan', 'Cc03_g04850' => 'ccan', 'CDE02G4469' => 'cde', 'CDE06G0883' => 'cde', 'CDE06G1295' => 'cde', 'CDE06G1390' => 'cde', 'CDE07G0584' => 'cde', 'CDE07G1084' => 'cde', 'CDE08G1259' => 'cde', 'Cfa002341' => 'cfa', 'Cfa024337' => 'cfa', 'Ciclev10004749m.g' => 'ccl', 'Ciclev10006127m.g' => 'ccl', 'Ciclev10019720m.g' => 'ccl', 'Ciclev10022652m.g' => 'ccl', 'CiPaw.01G190400' => 'cil', 'CiPaw.01G190500' => 'cil', 'CiPaw.02G116400' => 'cil', 'CiPaw.02G116500' => 'cil', 'CiPaw.04G183000' => 'cil', 'CiPaw.04G183300' => 'cil', 'ClCG05G004610' => 'cla', 'ClCG05G004620' => 'cla', 'ClCG06G006730' => 'cla', 'ClCG06G006740' => 'cla', 'ClCG11G003690' => 'cla', 'COL.COLO4_08276' => 'col', 'COL.COLO4_08277' => 'col', 'COL.COLO4_15787' => 'col', 'COL.COLO4_15789' => 'col', 'Cpa.g.c44815' => 'cpa', 'Cpa.g.sc52.144' => 'cpa', 'Cpa.g.sc58.46' => 'cpa', 'Cpa.g.sc58.47' => 'cpa', 'Cre08.g360900' => 'cre', 'CsaV3_2G013030' => 'csa', 'CsaV3_2G013050' => 'csa', 'CsaV3_2G015620' => 'csa', 'CsaV3_3G012590' => 'csa', 'CsaV3_3G012600' => 'csa', 'CSS0001641' => 'camsi', 'CSS0008310' => 'camsi', 'CSS0013011' => 'camsi', 'CSS0017147' => 'camsi', 'CSS0022970' => 'camsi', 'CSS0025655' => 'camsi', 'CSS0028665' => 'camsi', 'CSS0029117' => 'camsi', 'CSS0032024' => 'camsi', 'CSS0039681' => 'camsi', 'CSS0046516' => 'camsi', 'CSS0050307' => 'camsi', 'DCAR_005871' => 'dca', 'DCAR_007342' => 'dca', 'DCAR_024228' => 'dca', 'DCAR_027277' => 'dca', 'DCAR_030718' => 'dca', 'Dinv20287' => 'din', 'Dinv22461' => 'din', 'Dinv22464' => 'din', 'Dinv29912' => 'din', 'Dinv29913' => 'din', 'Dinv34580' => 'din', 'Dinv34582' => 'din', 'Dinv44632' => 'din', 'Duzib052G0266' => 'dzi', 'Duzib133G0907' => 'dzi', 'Duzib133G1034' => 'dzi', 'Duzib138G0207' => 'dzi', 'Duzib138G0491' => 'dzi', 'Duzib151G0812' => 'dzi', 'Duzib151G1166' => 'dzi', 'Duzib168G0192' => 'dzi', 'Duzib211G0077' => 'dzi', 'Duzib212G0429' => 'dzi', 'Duzib212G0472' => 'dzi', 'ECA233G2617' => 'eca', 'ECA236G4188' => 'eca', 'ECA240G0936' => 'eca', 'ECA240G1129' => 'eca', 'ECA247G0623' => 'eca', 'EL10Ac5g10451' => 'bvu', 'EL10Ac5g10453' => 'bvu', 'EL10Ac5g10894' => 'bvu', 'Eucgr.H00192' => 'egr', 'Eucgr.H00193' => 'egr', 'Eucgr.H00194' => 'egr', 'Eucgr.J01562' => 'egr', 'Eucgr.K03301' => 'egr', 'FAN02G0632' => 'fan', 'FAN05G5378' => 'fan', 'FAN09G3247' => 'fan', 'FAN12G0435' => 'fan', 'FAN12G2426' => 'fan', 'FAN14G1707' => 'fan', 'FAN14G4725' => 'fan', 'FAN15G2071' => 'fan', 'FAN17G3065' => 'fan', 'FAN19G1376' => 'fan', 'FAN20G0354' => 'fan', 'FAN20G2429' => 'fan', 'FAN20G2658' => 'fan', 'FAN24G2343' => 'fan', 'FAN27G2362' => 'fan', 'FAN28G1765' => 'fan', 'FvH4_1g16020' => 'fve', 'FvH4_2g04890' => 'fve', 'FvH4_2g22270' => 'fve', 'FvH4_4g02630' => 'fve', 'FvH4_4g02640' => 'fve', 'FvH4_6g02650' => 'fve', 'Glyma.02G140600' => 'gma', 'Glyma.03G159900' => 'gma', 'Glyma.05G234800' => 'gma', 'Glyma.07G269600' => 'gma', 'Glyma.08G042300' => 'gma', 'Glyma.10G033500' => 'gma', 'Glyma.10G185200' => 'gma', 'Glyma.17G004300' => 'gma', 'Glyma.19G161900' => 'gma', 'Glyma.20G205100' => 'gma', 'Glyma.20G205200' => 'gma', 'Gohir.A01G139101' => 'ghi', 'Gohir.A02G035600' => 'ghi', 'Gohir.A02G117901' => 'ghi', 'Gohir.A07G210100' => 'ghi', 'Gohir.A07G210200' => 'ghi', 'Gohir.A08G061100' => 'ghi', 'Gohir.A09G223000' => 'ghi', 'Gohir.A09G223100' => 'ghi', 'Gohir.A10G113900' => 'ghi', 'Gohir.A10G114000' => 'ghi', 'Gohir.D02G042300' => 'ghi', 'Gohir.D07G216100' => 'ghi', 'Gohir.D07G216200' => 'ghi', 'Gohir.D08G070400' => 'ghi', 'Gohir.D09G225000' => 'ghi', 'Gohir.D09G225100' => 'ghi', 'Gohir.D10G152300' => 'ghi', 'Gohir.D10G153200' => 'ghi', 'Gohir.D11G133701' => 'ghi', 'Gorai.004G074100' => 'gra', 'Gorai.005G046800' => 'gra', 'Gorai.006G246500' => 'gra', 'Gorai.006G246600' => 'gra', 'Gorai.007G142900' => 'gra', 'Gorai.011G171000' => 'gra', 'Gorai.011G171100' => 'gra', 'Gorai.013G104300' => 'gra', 'Gorai.013G104400' => 'gra', 'GSVIVG01000754001' => 'vvi', 'GSVIVG01000756001' => 'vvi', 'GSVIVG01010903001' => 'vvi', 'GSVIVG01017623001' => 'vvi', 'GSVIVG01018113001' => 'vvi', 'GSVIVG01018116001' => 'vvi', 'GSVIVG01018118001' => 'vvi', 'HanXRQChr03g0076211' => 'han', 'HanXRQChr03g0092431' => 'han', 'HanXRQChr03g0092441' => 'han', 'HanXRQChr03g0092591' => 'han', 'HanXRQChr03g0092671' => 'han', 'HanXRQChr03g0092681' => 'han', 'HanXRQChr03g0092691' => 'han', 'HanXRQChr03g0092701' => 'han', 'HanXRQChr03g0092721' => 'han', 'HanXRQChr03g0092731' => 'han', 'HanXRQChr04g0113681' => 'han', 'HanXRQChr10g0281371' => 'han', 'HanXRQChr11g0337141' => 'han', 'HanXRQChr13g0424521' => 'han', 'HanXRQChr13g0424531' => 'han', 'HanXRQChr13g0424541' => 'han', 'HanXRQChr16g0498221' => 'han', 'Haze_04377' => 'cav', 'Haze_11298' => 'cav', 'Haze_24547' => 'cav', 'Haze_24550' => 'cav', 'Haze_26587' => 'cav', 'Hma1.2p1_0650F.1_g195410' => 'hma', 'Hma1.2p1_0893F.1_g233470' => 'hma', 'HPP92_006508' => 'vpl', 'HPP92_024780' => 'vpl', 'Hund02688' => 'sun', 'Hund09380' => 'sun', 'Hund09381' => 'sun', 'Hund09832' => 'sun', 'Hund09833' => 'sun', 'Hund11351' => 'sun', 'Hund11513' => 'sun', 'Lalb_Chr06g0162591' => 'lal', 'Lalb_Chr06g0162601' => 'lal', 'Lalb_Chr06g0169321' => 'lal', 'Lalb_Chr09g0330951' => 'lal', 'Lalb_Chr16g0387631' => 'lal', 'Lalb_Chr21g0306241' => 'lal', 'Lalb_Chr25g0290051' => 'lal', 'Lalb_Chr25g0290061' => 'lal', 'Lalb_Chr25g0290071' => 'lal', 'Lj1g0003876' => 'lja', 'Lj1P1207T36' => 'lonja', 'Lj2C1156G12' => 'lonja', 'Lj3A793G39' => 'lonja', 'Lj3C580G2' => 'lonja', 'Lj3C780G2' => 'lonja', 'Lj3C780T4' => 'lonja', 'Lj3C793G9' => 'lonja', 'Lj4g0012960' => 'lja', 'Lj5g0021252' => 'lja', 'Lj5g0021484' => 'lja', 'Lj5g0024528' => 'lja', 'Lj6A399T12' => 'lonja', 'Lj6A656G65' => 'lonja', 'Lsat_1_v5_gn_3_125500' => 'lsa', 'Lsat_1_v5_gn_3_125540' => 'lsa', 'Lsat_1_v5_gn_5_72701' => 'lsa', 'Lsat_1_v5_gn_8_91560' => 'lsa', 'Lsat_1_v5_gn_9_9640' => 'lsa', 'Manes.01G200600' => 'mes', 'Manes.01G200700' => 'mes', 'Manes.03G168900' => 'mes', 'Manes.03G169000' => 'mes', 'Manes.05G085801' => 'mes', 'Manes.05G086200' => 'mes', 'Manes.15G036700' => 'mes', 'Manes.15G036900' => 'mes', 'Mapoly0004s0172' => 'mpo', 'Mapoly0023s0001' => 'mpo', 'Mapoly0142s0012' => 'mpo', 'MBI01_g32854_MAGBIO' => 'mbi', 'MBI11_g24427_MAGBIO' => 'mbi', 'MBI11_g47319_MAGBIO' => 'mbi', 'MCO01G433' => 'mco', 'MD00G1187800' => 'mdo', 'MD04G1226500' => 'mdo', 'MD05G1203900' => 'mdo', 'MD10G1191100' => 'mdo', 'MD12G1243500' => 'mdo', 'MD13G1207000' => 'mdo', 'MD13G1207100' => 'mdo', 'MD16G1208600' => 'mdo', 'Medtr1g050352' => 'mtr', 'Medtr1g070385' => 'mtr', 'Medtr1g070450' => 'mtr', 'Medtr1g075200' => 'mtr', 'Medtr1g075250' => 'mtr', 'Medtr1g075260' => 'mtr', 'Medtr1g475250' => 'mtr', 'Medtr4g075450' => 'mtr', 'Medtr7g096300' => 'mtr', 'Medtr8g105110' => 'mtr', 'MELO3C006470.2' => 'cme', 'MELO3C006471.2' => 'cme', 'MELO3C020772.2' => 'cme', 'MELO3C026780.2' => 'cme', 'MELO3C026781.2' => 'cme', 'Migut.D00390' => 'egut', 'Migut.G00435' => 'egut', 'Migut.G00436' => 'egut', 'Migut.G00718' => 'egut', 'MSTRG.21891' => 'ama', 'MSTRG.26910' => 'ama', 'MSTRG.4099' => 'ama', 'MSTRG.9925' => 'ama', 'Nitab4.5_0000165g0010' => 'nta', 'Nitab4.5_0000209g0180' => 'nta', 'Nitab4.5_0000244g0440' => 'nta', 'Nitab4.5_0000525g0220' => 'nta', 'Nitab4.5_0001597g0020' => 'nta', 'Nitab4.5_0001878g0040' => 'nta', 'Nitab4.5_0001878g0060' => 'nta', 'Nitab4.5_0002838g0100' => 'nta', 'Nitab4.5_0002838g0120' => 'nta', 'Nitab4.5_0004798g0030' => 'nta', 'Nitab4.5_0005420g0010' => 'nta', 'Nitab4.5_0005507g0010' => 'nta', 'Nitab4.5_0005574g0020' => 'nta', 'Nitab4.5_0005838g0010' => 'nta', 'Nitab4.5_0010580g0020' => 'nta', 'Nn1g02599' => 'nnu', 'Nn1g02608' => 'nnu', 'Nn3g17742' => 'nnu', 'Nn3g19534' => 'nnu', 'Nn3g19535' => 'nnu', 'Oeu008790.1' => 'oeu', 'Oeu008792.1' => 'oeu', 'Oeu032590.1' => 'oeu', 'Oeu035349.1' => 'oeu', 'Oeu049791.1' => 'oeu', 'Os01g0774500' => 'osa', 'Os03g0628800' => 'osa', 'Os03g0798600' => 'osa', 'Os05g0508800' => 'osa', 'Peaxi162Scf00036g02018' => 'pax', 'Peaxi162Scf00578g00032' => 'pax', 'Peaxi162Scf00578g00317' => 'pax', 'Peaxi162Scf00785g00114' => 'pax', 'Peaxi162Scf00813g00119' => 'pax', 'Peaxi162Scf00906g00227' => 'pax', 'PGR004G0875' => 'pgr', 'PGR004G2424' => 'pgr', 'PGR031G1239' => 'pgr', 'PGR031G2474' => 'pgr', 'PGR044G0423' => 'pgr', 'PGSC0003DMG400001128' => 'stu', 'PGSC0003DMG400007336' => 'stu', 'PGSC0003DMG400016318' => 'stu', 'PGSC0003DMG400016319' => 'stu', 'PGSC0003DMG400018074' => 'stu', 'Phvul.001G157700' => 'pvu', 'Phvul.002G148550' => 'pvu', 'Phvul.002G320200' => 'pvu', 'Phvul.003G089200' => 'pvu', 'Phvul.007G126000' => 'pvu', 'Phvul.007G126100' => 'pvu', 'Phvul.007G178000' => 'pvu', 'Phvul.007G178200' => 'pvu', 'Potri.002G043000' => 'ptr', 'Potri.002G043200' => 'ptr', 'Potri.003G123750' => 'ptr', 'Potri.005G055401' => 'ptr', 'Potri.005G219700' => 'ptr', 'Potri.005G220000' => 'ptr', 'Potri.008G161901' => 'ptr', 'Potri.008G162000' => 'ptr', 'Potri.008G162400' => 'ptr', 'Potri.010G076900' => 'ptr', 'Pp3c12_9180' => 'ppa', 'Pp3c13_19770' => 'ppa', 'Pp3c14_22950' => 'ppa', 'Pp3c16_12160' => 'ppa', 'Pp3c27_7820' => 'ppa', 'Pp3c2_3490' => 'ppa', 'Pp3c3_23700' => 'ppa', 'Pp3c3_36520' => 'ppa', 'Pp3c4_15250' => 'ppa', 'PRCOL_00007002' => 'pco', 'Prupe.1G030600' => 'ppe', 'Prupe.1G030700' => 'ppe', 'Prupe.6G345200' => 'ppe', 'Prupe.8G230300' => 'ppe', 'Prupe.8G230500' => 'ppe', 'Psat3g059600' => 'psa', 'Psat5g200920' => 'psa', 'Psat6g056440' => 'psa', 'Psat6g057360' => 'psa', 'Psat6g134120' => 'psa', 'Psat6g134160' => 'psa', 'Psat7g008640' => 'psa', 'Psat7g185240' => 'psa', 'PSO017G1330' => 'pso', 'PSO063G6097' => 'pso', 'PSO170G0835' => 'pso', 'PSO170G2499' => 'pso', 'PSO210G5058' => 'pso', 'PSO210G6154' => 'pso', 'PSO585G0031' => 'pso', 'PSO832G0264' => 'pso', 'PSO832G4288' => 'pso', 'QL03p027355' => 'qlo', 'QL03p027430' => 'qlo', 'QL04p081380' => 'qlo', 'QL06p015642' => 'qlo', 'QL06p015650' => 'qlo', 'QL06p015686' => 'qlo', 'QL12p042927' => 'qlo', 'QL93p1863_0035' => 'qlo', 'RcHm_v2.0_Chr3g0450581' => 'rch', 'RcHm_v2.0_Chr4g0390371' => 'rch', 'RcHm_v2.0_Chr4g0390381' => 'rch', 'RcHm_v2.0_Chr4g0390491' => 'rch', 'RcHm_v2.0_Chr4g0390501' => 'rch', 'RcHm_v2.0_Chr6g0289231' => 'rch', 'Rhsim04G0190400' => 'rsi', 'Rhsim04G0190500' => 'rsi', 'Rhsim04G0190600' => 'rsi', 'Rhsim13G0031400' => 'rsi', 'Rhsim13G0165600' => 'rsi', 'RhsimUnG0114600' => 'rsi', 'RhsimUnG0114700' => 'rsi', 'Sabra02G0034800' => 'sbr', 'Sabra02G0035100' => 'sbr', 'Sabra05G0168600' => 'sbr', 'Sabra05G0168800' => 'sbr', 'Sabra08G0123700' => 'sbr', 'Sabra10G0031900' => 'sbr', 'Sabra13G0039000' => 'sbr', 'SalBow2G0782' => 'sbo', 'SalBow2G1403' => 'sbo', 'SalBow4G0074' => 'sbo', 'SalBow4G2635' => 'sbo', 'SalBow5G3010' => 'sbo', 'Sc05g0000870' => 'sci', 'Sc05g0000890' => 'sci', 'Sc13g0005000' => 'sci', 'Sc13g0005030' => 'sci', 'Sc19g0003790' => 'sci', 'Sc19g0003800' => 'sci', 'Sed0003467' => 'sed', 'Sed0009355' => 'sed', 'Sed0009894' => 'sed', 'Sed0011972' => 'sed', 'Sed0021483' => 'sed', 'Sed0021750' => 'sed', 'Sed0026279' => 'sed', 'SEGI_05312' => 'sgi', 'SEGI_10112' => 'sgi', 'SEGI_15835' => 'sgi', 'SEGI_30386' => 'sgi', 'SEGI_34122' => 'sgi', 'SEGI_35063' => 'sgi', 'SGA_v2.0_scaffold101G29794' => 'sas', 'SGA_v2.0_scaffold1G00573' => 'sas', 'SGA_v2.0_scaffold79G25637' => 'sas', 'SGA_v2.0_scaffold88G27283' => 'sas', 'SGA_v2.0_scaffold88G27285' => 'sas', 'SGA_v2.0_scaffold88G27331' => 'sas', 'SHI09937' => 'shi', 'SMO119G0302' => 'smo', 'SMO137G0231' => 'smo', 'SMO367G1151' => 'smo', 'Solyc02g082000.3' => 'sly', 'Solyc06g031670.3' => 'sly', 'Solyc06g053810.3' => 'sly', 'Solyc07g025457.1' => 'sly', 'Solyc08g059740.1' => 'sly', 'Solyc08g059750.3' => 'sly', 'Solyc09g083370.3' => 'sly', 'Solyc12g038950.3' => 'sly', 'Sopen02g026630' => 'spe', 'Sopen06g018930' => 'spe', 'Sopen06g018940' => 'spe', 'Sopen08g009460' => 'spe', 'Sopen09g032290' => 'spe', 'Sp1g03080' => 'spa', 'Sp1g03090' => 'spa', 'Sp1g05480' => 'spa', 'Sp2g07860' => 'spa', 'Sp2g08430' => 'spa', 'Sp2g08440' => 'spa', 'Sp2g26200' => 'spa', 'Sp4g13170' => 'spa', 'Sp6g33840' => 'spa', 'SpUn1204_0010' => 'spa', 'TAR365G0908' => 'tar', 'TAR381G1270' => 'tar', 'TAR381G1651' => 'tar', 'TAR625G1131' => 'tar', 'TAR633G0962' => 'tar', 'TAR633G1729' => 'tar', 'TAR633G1864' => 'tar', 'TAR636G0221' => 'tar', 'TAR636G0314' => 'tar', 'TAR636G3202' => 'tar', 'THA.LOC104800805' => 'tha', 'THA.LOC104801096' => 'tha', 'THA.LOC104801555' => 'tha', 'THA.LOC104808491' => 'tha', 'THA.LOC104808595' => 'tha', 'THA.LOC104815985' => 'tha', 'THA.LOC104822250' => 'tha', 'THA.LOC104826071' => 'tha', 'Thecc.01G265200' => 'tca', 'Thecc.01G265300' => 'tca', 'Thecc.01G265700' => 'tca', 'Thecc.03G109100' => 'tca', 'Thecc.04G245900' => 'tca', 'Thecc.04G246000' => 'tca', 'Thhalv10003334m.g' => 'esa', 'Thhalv10005508m.g' => 'esa', 'Thhalv10005643m.g' => 'esa', 'Thhalv10007316m.g' => 'esa', 'Thhalv10009006m.g' => 'esa', 'Thhalv10009309m.g' => 'esa', 'Thhalv10014917m.g' => 'esa', 'Thhalv10014919m.g' => 'esa', 'Thhalv10015393m.g' => 'esa', 'Thhalv10016515m.g' => 'esa', 'Thhalv10029242m.g' => 'esa', 'TPR.G16654' => 'tpr', 'TPR.G20589' => 'tpr', 'TPR.G23029' => 'tpr', 'TPR.G27731' => 'tpr', 'TPR.G28889' => 'tpr', 'TPR.G28899' => 'tpr', 'TPR.G30846' => 'tpr', 'TPR.G5452' => 'tpr', 'TPR.G5713' => 'tpr', 'TPR.G9046' => 'tpr', 'TPR.G9061' => 'tpr', 'TWI09G1075' => 'twi', 'TWI12G0806' => 'twi', 'TWI18G0108' => 'twi', 'TWI53G1361' => 'twi', 'TWI73G0185' => 'twi', 'TWI73G0427' => 'twi', 'unitig_37.g12001' => 'ugi', 'unitig_747.g21660' => 'ugi', 'unitig_748.g7232' => 'ugi', 'unitig_748.g7315' => 'ugi', 'unitig_85.g27262' => 'ugi', 'unitig_92.g28220' => 'ugi', 'vmacro02632' => 'vma', 'vmacro08410' => 'vma', 'vmacro08411' => 'vma', 'vmacro15407' => 'vma', 'VMungo0251G3619' => 'vmu', 'VMungo0720G1204' => 'vmu', 'VMungo0720G1918' => 'vmu', 'VMungo0720G2387' => 'vmu', 'VMungo0720G2961' => 'vmu', 'VMungo1215G2154' => 'vmu', 'VMungo1383G2411' => 'vmu', 'Zm00001eb051130' => 'zma', 'Zm00001eb116830' => 'zma', 'Zm00001eb116850' => 'zma', 'Zm00001eb151740' => 'zma', 'Zm00001eb292360' => 'zma', 'Zm00001eb301640' => 'zma' ), 'gf_id' => 'HOM05D000856', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000856' ), 'data_identifier' => 'HOM05D000856', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000856', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p00010' => 'bna', 'A03p04160' => 'bna', 'A03p17160' => 'bna', 'A04p23370' => 'bna', 'A05p14860' => 'bna', 'A08p37020' => 'bna', 'A09p08050' => 'bna', 'A09p66800' => 'bna', 'A09p67940' => 'bna', 'A10p02680' => 'bna', 'A10p05320' => 'bna', 'Aa31LG1G20560' => 'aar', 'Aa31LG1G20610' => 'aar', 'Aa31LG1G7810' => 'aar', 'Aa31LG5G3590' => 'aar', 'Aa31LG5G6140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3819' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4683' => 'aag', 'Actinidia04480' => 'ach', 'Actinidia05466' => 'ach', 'Actinidia08445' => 'ach', 'Actinidia21170' => 'ach', 'Actinidia24812' => 'ach', 'Actinidia24951' => 'ach', 'Actinidia40088' => 'ach', 'Ah.02g111660' => 'amhyb', 'Ah.11g048900' => 'amhyb', 'Ah.11g049910' => 'amhyb', 'AL1G13870' => 'aly', 'AL1G13880' => 'aly', 'AL1G16760' => 'aly', 'AL390U10020' => 'aly', 'AL4G25520' => 'aly', 'AL6G19890' => 'aly', 'AL6G19900' => 'aly', 'AL6G19910' => 'aly', 'AL8G40100' => 'aly', 'Aqoxy2G03562' => 'aox', 'Aqoxy5G00316' => 'aox', 'Aqoxy5G00926' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1628KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1H403S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2FU6SJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.882I6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8YRY2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YN1SN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AF70II' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZA8L1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F916KL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHRD8H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KTZ8QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S22EMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8M29T' => 'arhy', 'AT1G04270' => 'ath', 'AT1G04280' => 'ath', 'AT1G06750' => 'ath', 'AT1G33850' => 'ath', 'AT2G30630' => 'ath', 'AT5G09490' => 'ath', 'AT5G09500' => 'ath', 'AT5G09510' => 'ath', 'AT5G43640' => 'ath', 'AT5G63070' => 'ath', 'ATR0605G315' => 'atr', 'Atru.chr11.175' => 'acertr', 'Atru.chr11.653' => 'acertr', 'Atru.chr3.1616' => 'acertr', 'Atru.chr4.2230' => 'acertr', 'Atru.chr4.2232' => 'acertr', 'Atru.chr5.1598' => 'acertr', 'Atru.chr5.1600' => 'acertr', 'Atru.chr5.2188' => 'acertr', 'AUR62008326' => 'cqu', 'AUR62011922' => 'cqu', 'AUR62011924' => 'cqu', 'AUR62021771' => 'cqu', 'AUR62032237' => 'cqu', 'AUR62032240' => 'cqu', 'BcaB01g05572' => 'bca', 'BcaB02g10337' => 'bca', 'BcaB04g19944' => 'bca', 'BcaB05g21548' => 'bca', 'BcaB05g21549' => 'bca', 'BcaB05g23227' => 'bca', 'BcaB06g26256' => 'bca', 'BcaB06g26257' => 'bca', 'BcaB06g28379' => 'bca', 'BcaC02g11159' => 'bca', 'BcaC03g13258' => 'bca', 'BcaC03g13259' => 'bca', 'BcaC05g24456' => 'bca', 'BcaC05g24457' => 'bca', 'BcaC07g36922' => 'bca', 'BcaC07g36923' => 'bca', 'BcaC07g42050' => 'bca', 'BcaC07g42176' => 'bca', 'BcaC07g42195' => 'bca', 'BcaC07g42196' => 'bca', 'BcaNung06674' => 'bca', 'BolC2t06351H' => 'bol', 'BolC2t06352H' => 'bol', 'BolC3t12993H' => 'bol', 'BolC4t23525H' => 'bol', 'BolC4t27475H' => 'bol', 'BolC5t29025H' => 'bol', 'BolC5t29026H' => 'bol', 'BolC8t46898H' => 'bol', 'BolC8t46899H' => 'bol', 'BolC8t52630H' => 'bol', 'BolC8t52765H' => 'bol', 'BolC9t53824H' => 'bol', 'BraA03t09760Z' => 'bra', 'BraA03t10990Z' => 'bra', 'BraA05t20413Z' => 'bra', 'BraA08t35602Z' => 'bra', 'BraA09t36458Z' => 'bra', 'BraA09t42018Z' => 'bra', 'BraA09t42129Z' => 'bra', 'BraA10t42536Z' => 'bra', 'BraA10t42537Z' => 'bra', 'C01p10690' => 'bna', 'C02p03890' => 'bna', 'C02p03900' => 'bna', 'C03p04620' => 'bna', 'C04p19870' => 'bna', 'C04p59670' => 'bna', 'C05p02460' => 'bna', 'C05p02470' => 'bna', 'C08p00980' => 'bna', 'C08p00990' => 'bna', 'C08p51030' => 'bna', 'C08p52360' => 'bna', 'C09p09120' => 'bna', 'CAN.G19.15' => 'can', 'CAN.G251.10' => 'can', 'CAN.G251.9' => 'can', 'CAN.G398.24' => 'can', 'CAN.G410.32' => 'can', 'CAN.G881.2' => 'can', 'CANSAT01G3025' => 'cansat', 'CANSAT78G1211' => 'cansat', 'CANSAT78G1218' => 'cansat', 'CANSAT78G1521' => 'cansat', 'CANSAT78G1670' => 'cansat', 'CARHR003600' => 'chi', 'CARHR003610' => 'chi', 'CARHR006290' => 'chi', 'CARHR006430' => 'chi', 'CARHR124110' => 'chi', 'CARHR203870' => 'chi', 'CARHR203880' => 'chi', 'CARHR203890' => 'chi', 'CARHR276880' => 'chi', 'Carub.0001s0346' => 'cru', 'Carub.0001s0347' => 'cru', 'Carub.0001s0607' => 'cru', 'Carub.0003s2768' => 'cru', 'Carub.0003s2769' => 'cru', 'Carub.0004s1178' => 'cru', 'Carub.0006s0806' => 'cru', 'Carub.0006s0807' => 'cru', 'Carub.0006s0808' => 'cru', 'Carub.0008s0501' => 'cru', 'Carub.0008s2379' => 'cru', 'Ca_08655_v3' => 'car', 'Ca_08922_v3' => 'car', 'Ca_08923_v3' => 'car', 'Ca_09119_v3' => 'car', 'Ca_09703_v3' => 'car', 'Ca_09705_v3' => 'car', 'Ca_09835_v3' => 'car', 'Ca_26403_v3' => 'car', 'Ca_30719_v3' => 'car', 'CBR_g17958' => 'cbr', 'CBR_g40516' => 'cbr', 'Cc00_g05350' => 'ccan', 'Cc01_g18690' => 'ccan', 'Cc03_g04830' => 'ccan', 'Cc03_g04850' => 'ccan', 'CDE02G4469' => 'cde', 'CDE06G0883' => 'cde', 'CDE06G1295' => 'cde', 'CDE06G1390' => 'cde', 'CDE07G0584' => 'cde', 'CDE07G1084' => 'cde', 'CDE08G1259' => 'cde', 'Cfa002341' => 'cfa', 'Cfa024337' => 'cfa', 'Ciclev10004749m.g' => 'ccl', 'Ciclev10006127m.g' => 'ccl', 'Ciclev10019720m.g' => 'ccl', 'Ciclev10022652m.g' => 'ccl', 'CiPaw.01G190400' => 'cil', 'CiPaw.01G190500' => 'cil', 'CiPaw.02G116400' => 'cil', 'CiPaw.02G116500' => 'cil', 'CiPaw.04G183000' => 'cil', 'CiPaw.04G183300' => 'cil', 'ClCG05G004610' => 'cla', 'ClCG05G004620' => 'cla', 'ClCG06G006730' => 'cla', 'ClCG06G006740' => 'cla', 'ClCG11G003690' => 'cla', 'COL.COLO4_08276' => 'col', 'COL.COLO4_08277' => 'col', 'COL.COLO4_15787' => 'col', 'COL.COLO4_15789' => 'col', 'Cpa.g.c44815' => 'cpa', 'Cpa.g.sc52.144' => 'cpa', 'Cpa.g.sc58.46' => 'cpa', 'Cpa.g.sc58.47' => 'cpa', 'Cre08.g360900' => 'cre', 'CsaV3_2G013030' => 'csa', 'CsaV3_2G013050' => 'csa', 'CsaV3_2G015620' => 'csa', 'CsaV3_3G012590' => 'csa', 'CsaV3_3G012600' => 'csa', 'CSS0001641' => 'camsi', 'CSS0008310' => 'camsi', 'CSS0013011' => 'camsi', 'CSS0017147' => 'camsi', 'CSS0022970' => 'camsi', 'CSS0025655' => 'camsi', 'CSS0028665' => 'camsi', 'CSS0029117' => 'camsi', 'CSS0032024' => 'camsi', 'CSS0039681' => 'camsi', 'CSS0046516' => 'camsi', 'CSS0050307' => 'camsi', 'DCAR_005871' => 'dca', 'DCAR_007342' => 'dca', 'DCAR_024228' => 'dca', 'DCAR_027277' => 'dca', 'DCAR_030718' => 'dca', 'Dinv20287' => 'din', 'Dinv22461' => 'din', 'Dinv22464' => 'din', 'Dinv29912' => 'din', 'Dinv29913' => 'din', 'Dinv34580' => 'din', 'Dinv34582' => 'din', 'Dinv44632' => 'din', 'Duzib052G0266' => 'dzi', 'Duzib133G0907' => 'dzi', 'Duzib133G1034' => 'dzi', 'Duzib138G0207' => 'dzi', 'Duzib138G0491' => 'dzi', 'Duzib151G0812' => 'dzi', 'Duzib151G1166' => 'dzi', 'Duzib168G0192' => 'dzi', 'Duzib211G0077' => 'dzi', 'Duzib212G0429' => 'dzi', 'Duzib212G0472' => 'dzi', 'ECA233G2617' => 'eca', 'ECA236G4188' => 'eca', 'ECA240G0936' => 'eca', 'ECA240G1129' => 'eca', 'ECA247G0623' => 'eca', 'EL10Ac5g10451' => 'bvu', 'EL10Ac5g10453' => 'bvu', 'EL10Ac5g10894' => 'bvu', 'Eucgr.H00192' => 'egr', 'Eucgr.H00193' => 'egr', 'Eucgr.H00194' => 'egr', 'Eucgr.J01562' => 'egr', 'Eucgr.K03301' => 'egr', 'FAN02G0632' => 'fan', 'FAN05G5378' => 'fan', 'FAN09G3247' => 'fan', 'FAN12G0435' => 'fan', 'FAN12G2426' => 'fan', 'FAN14G1707' => 'fan', 'FAN14G4725' => 'fan', 'FAN15G2071' => 'fan', 'FAN17G3065' => 'fan', 'FAN19G1376' => 'fan', 'FAN20G0354' => 'fan', 'FAN20G2429' => 'fan', 'FAN20G2658' => 'fan', 'FAN24G2343' => 'fan', 'FAN27G2362' => 'fan', 'FAN28G1765' => 'fan', 'FvH4_1g16020' => 'fve', 'FvH4_2g04890' => 'fve', 'FvH4_2g22270' => 'fve', 'FvH4_4g02630' => 'fve', 'FvH4_4g02640' => 'fve', 'FvH4_6g02650' => 'fve', 'Glyma.02G140600' => 'gma', 'Glyma.03G159900' => 'gma', 'Glyma.05G234800' => 'gma', 'Glyma.07G269600' => 'gma', 'Glyma.08G042300' => 'gma', 'Glyma.10G033500' => 'gma', 'Glyma.10G185200' => 'gma', 'Glyma.17G004300' => 'gma', 'Glyma.19G161900' => 'gma', 'Glyma.20G205100' => 'gma', 'Glyma.20G205200' => 'gma', 'Gohir.A01G139101' => 'ghi', 'Gohir.A02G035600' => 'ghi', 'Gohir.A02G117901' => 'ghi', 'Gohir.A07G210100' => 'ghi', 'Gohir.A07G210200' => 'ghi', 'Gohir.A08G061100' => 'ghi', 'Gohir.A09G223000' => 'ghi', 'Gohir.A09G223100' => 'ghi', 'Gohir.A10G113900' => 'ghi', 'Gohir.A10G114000' => 'ghi', 'Gohir.D02G042300' => 'ghi', 'Gohir.D07G216100' => 'ghi', 'Gohir.D07G216200' => 'ghi', 'Gohir.D08G070400' => 'ghi', 'Gohir.D09G225000' => 'ghi', 'Gohir.D09G225100' => 'ghi', 'Gohir.D10G152300' => 'ghi', 'Gohir.D10G153200' => 'ghi', 'Gohir.D11G133701' => 'ghi', 'Gorai.004G074100' => 'gra', 'Gorai.005G046800' => 'gra', 'Gorai.006G246500' => 'gra', 'Gorai.006G246600' => 'gra', 'Gorai.007G142900' => 'gra', 'Gorai.011G171000' => 'gra', 'Gorai.011G171100' => 'gra', 'Gorai.013G104300' => 'gra', 'Gorai.013G104400' => 'gra', 'GSVIVG01000754001' => 'vvi', 'GSVIVG01000756001' => 'vvi', 'GSVIVG01010903001' => 'vvi', 'GSVIVG01017623001' => 'vvi', 'GSVIVG01018113001' => 'vvi', 'GSVIVG01018116001' => 'vvi', 'GSVIVG01018118001' => 'vvi', 'HanXRQChr03g0076211' => 'han', 'HanXRQChr03g0092431' => 'han', 'HanXRQChr03g0092441' => 'han', 'HanXRQChr03g0092591' => 'han', 'HanXRQChr03g0092671' => 'han', 'HanXRQChr03g0092681' => 'han', 'HanXRQChr03g0092691' => 'han', 'HanXRQChr03g0092701' => 'han', 'HanXRQChr03g0092721' => 'han', 'HanXRQChr03g0092731' => 'han', 'HanXRQChr04g0113681' => 'han', 'HanXRQChr10g0281371' => 'han', 'HanXRQChr11g0337141' => 'han', 'HanXRQChr13g0424521' => 'han', 'HanXRQChr13g0424531' => 'han', 'HanXRQChr13g0424541' => 'han', 'HanXRQChr16g0498221' => 'han', 'Haze_04377' => 'cav', 'Haze_11298' => 'cav', 'Haze_24547' => 'cav', 'Haze_24550' => 'cav', 'Haze_26587' => 'cav', 'Hma1.2p1_0650F.1_g195410' => 'hma', 'Hma1.2p1_0893F.1_g233470' => 'hma', 'HPP92_006508' => 'vpl', 'HPP92_024780' => 'vpl', 'Hund02688' => 'sun', 'Hund09380' => 'sun', 'Hund09381' => 'sun', 'Hund09832' => 'sun', 'Hund09833' => 'sun', 'Hund11351' => 'sun', 'Hund11513' => 'sun', 'Lalb_Chr06g0162591' => 'lal', 'Lalb_Chr06g0162601' => 'lal', 'Lalb_Chr06g0169321' => 'lal', 'Lalb_Chr09g0330951' => 'lal', 'Lalb_Chr16g0387631' => 'lal', 'Lalb_Chr21g0306241' => 'lal', 'Lalb_Chr25g0290051' => 'lal', 'Lalb_Chr25g0290061' => 'lal', 'Lalb_Chr25g0290071' => 'lal', 'Lj1g0003876' => 'lja', 'Lj1P1207T36' => 'lonja', 'Lj2C1156G12' => 'lonja', 'Lj3A793G39' => 'lonja', 'Lj3C580G2' => 'lonja', 'Lj3C780G2' => 'lonja', 'Lj3C780T4' => 'lonja', 'Lj3C793G9' => 'lonja', 'Lj4g0012960' => 'lja', 'Lj5g0021252' => 'lja', 'Lj5g0021484' => 'lja', 'Lj5g0024528' => 'lja', 'Lj6A399T12' => 'lonja', 'Lj6A656G65' => 'lonja', 'Lsat_1_v5_gn_3_125500' => 'lsa', 'Lsat_1_v5_gn_3_125540' => 'lsa', 'Lsat_1_v5_gn_5_72701' => 'lsa', 'Lsat_1_v5_gn_8_91560' => 'lsa', 'Lsat_1_v5_gn_9_9640' => 'lsa', 'Manes.01G200600' => 'mes', 'Manes.01G200700' => 'mes', 'Manes.03G168900' => 'mes', 'Manes.03G169000' => 'mes', 'Manes.05G085801' => 'mes', 'Manes.05G086200' => 'mes', 'Manes.15G036700' => 'mes', 'Manes.15G036900' => 'mes', 'Mapoly0004s0172' => 'mpo', 'Mapoly0023s0001' => 'mpo', 'Mapoly0142s0012' => 'mpo', 'MBI01_g32854_MAGBIO' => 'mbi', 'MBI11_g24427_MAGBIO' => 'mbi', 'MBI11_g47319_MAGBIO' => 'mbi', 'MCO01G433' => 'mco', 'MD00G1187800' => 'mdo', 'MD04G1226500' => 'mdo', 'MD05G1203900' => 'mdo', 'MD10G1191100' => 'mdo', 'MD12G1243500' => 'mdo', 'MD13G1207000' => 'mdo', 'MD13G1207100' => 'mdo', 'MD16G1208600' => 'mdo', 'Medtr1g050352' => 'mtr', 'Medtr1g070385' => 'mtr', 'Medtr1g070450' => 'mtr', 'Medtr1g075200' => 'mtr', 'Medtr1g075250' => 'mtr', 'Medtr1g075260' => 'mtr', 'Medtr1g475250' => 'mtr', 'Medtr4g075450' => 'mtr', 'Medtr7g096300' => 'mtr', 'Medtr8g105110' => 'mtr', 'MELO3C006470.2' => 'cme', 'MELO3C006471.2' => 'cme', 'MELO3C020772.2' => 'cme', 'MELO3C026780.2' => 'cme', 'MELO3C026781.2' => 'cme', 'Migut.D00390' => 'egut', 'Migut.G00435' => 'egut', 'Migut.G00436' => 'egut', 'Migut.G00718' => 'egut', 'MSTRG.21891' => 'ama', 'MSTRG.26910' => 'ama', 'MSTRG.4099' => 'ama', 'MSTRG.9925' => 'ama', 'Nitab4.5_0000165g0010' => 'nta', 'Nitab4.5_0000209g0180' => 'nta', 'Nitab4.5_0000244g0440' => 'nta', 'Nitab4.5_0000525g0220' => 'nta', 'Nitab4.5_0001597g0020' => 'nta', 'Nitab4.5_0001878g0040' => 'nta', 'Nitab4.5_0001878g0060' => 'nta', 'Nitab4.5_0002838g0100' => 'nta', 'Nitab4.5_0002838g0120' => 'nta', 'Nitab4.5_0004798g0030' => 'nta', 'Nitab4.5_0005420g0010' => 'nta', 'Nitab4.5_0005507g0010' => 'nta', 'Nitab4.5_0005574g0020' => 'nta', 'Nitab4.5_0005838g0010' => 'nta', 'Nitab4.5_0010580g0020' => 'nta', 'Nn1g02599' => 'nnu', 'Nn1g02608' => 'nnu', 'Nn3g17742' => 'nnu', 'Nn3g19534' => 'nnu', 'Nn3g19535' => 'nnu', 'Oeu008790.1' => 'oeu', 'Oeu008792.1' => 'oeu', 'Oeu032590.1' => 'oeu', 'Oeu035349.1' => 'oeu', 'Oeu049791.1' => 'oeu', 'Os01g0774500' => 'osa', 'Os03g0628800' => 'osa', 'Os03g0798600' => 'osa', 'Os05g0508800' => 'osa', 'Peaxi162Scf00036g02018' => 'pax', 'Peaxi162Scf00578g00032' => 'pax', 'Peaxi162Scf00578g00317' => 'pax', 'Peaxi162Scf00785g00114' => 'pax', 'Peaxi162Scf00813g00119' => 'pax', 'Peaxi162Scf00906g00227' => 'pax', 'PGR004G0875' => 'pgr', 'PGR004G2424' => 'pgr', 'PGR031G1239' => 'pgr', 'PGR031G2474' => 'pgr', 'PGR044G0423' => 'pgr', 'PGSC0003DMG400001128' => 'stu', 'PGSC0003DMG400007336' => 'stu', 'PGSC0003DMG400016318' => 'stu', 'PGSC0003DMG400016319' => 'stu', 'PGSC0003DMG400018074' => 'stu', 'Phvul.001G157700' => 'pvu', 'Phvul.002G148550' => 'pvu', 'Phvul.002G320200' => 'pvu', 'Phvul.003G089200' => 'pvu', 'Phvul.007G126000' => 'pvu', 'Phvul.007G126100' => 'pvu', 'Phvul.007G178000' => 'pvu', 'Phvul.007G178200' => 'pvu', 'Potri.002G043000' => 'ptr', 'Potri.002G043200' => 'ptr', 'Potri.003G123750' => 'ptr', 'Potri.005G055401' => 'ptr', 'Potri.005G219700' => 'ptr', 'Potri.005G220000' => 'ptr', 'Potri.008G161901' => 'ptr', 'Potri.008G162000' => 'ptr', 'Potri.008G162400' => 'ptr', 'Potri.010G076900' => 'ptr', 'Pp3c12_9180' => 'ppa', 'Pp3c13_19770' => 'ppa', 'Pp3c14_22950' => 'ppa', 'Pp3c16_12160' => 'ppa', 'Pp3c27_7820' => 'ppa', 'Pp3c2_3490' => 'ppa', 'Pp3c3_23700' => 'ppa', 'Pp3c3_36520' => 'ppa', 'Pp3c4_15250' => 'ppa', 'PRCOL_00007002' => 'pco', 'Prupe.1G030600' => 'ppe', 'Prupe.1G030700' => 'ppe', 'Prupe.6G345200' => 'ppe', 'Prupe.8G230300' => 'ppe', 'Prupe.8G230500' => 'ppe', 'Psat3g059600' => 'psa', 'Psat5g200920' => 'psa', 'Psat6g056440' => 'psa', 'Psat6g057360' => 'psa', 'Psat6g134120' => 'psa', 'Psat6g134160' => 'psa', 'Psat7g008640' => 'psa', 'Psat7g185240' => 'psa', 'PSO017G1330' => 'pso', 'PSO063G6097' => 'pso', 'PSO170G0835' => 'pso', 'PSO170G2499' => 'pso', 'PSO210G5058' => 'pso', 'PSO210G6154' => 'pso', 'PSO585G0031' => 'pso', 'PSO832G0264' => 'pso', 'PSO832G4288' => 'pso', 'QL03p027355' => 'qlo', 'QL03p027430' => 'qlo', 'QL04p081380' => 'qlo', 'QL06p015642' => 'qlo', 'QL06p015650' => 'qlo', 'QL06p015686' => 'qlo', 'QL12p042927' => 'qlo', 'QL93p1863_0035' => 'qlo', 'RcHm_v2.0_Chr3g0450581' => 'rch', 'RcHm_v2.0_Chr4g0390371' => 'rch', 'RcHm_v2.0_Chr4g0390381' => 'rch', 'RcHm_v2.0_Chr4g0390491' => 'rch', 'RcHm_v2.0_Chr4g0390501' => 'rch', 'RcHm_v2.0_Chr6g0289231' => 'rch', 'Rhsim04G0190400' => 'rsi', 'Rhsim04G0190500' => 'rsi', 'Rhsim04G0190600' => 'rsi', 'Rhsim13G0031400' => 'rsi', 'Rhsim13G0165600' => 'rsi', 'RhsimUnG0114600' => 'rsi', 'RhsimUnG0114700' => 'rsi', 'Sabra02G0034800' => 'sbr', 'Sabra02G0035100' => 'sbr', 'Sabra05G0168600' => 'sbr', 'Sabra05G0168800' => 'sbr', 'Sabra08G0123700' => 'sbr', 'Sabra10G0031900' => 'sbr', 'Sabra13G0039000' => 'sbr', 'SalBow2G0782' => 'sbo', 'SalBow2G1403' => 'sbo', 'SalBow4G0074' => 'sbo', 'SalBow4G2635' => 'sbo', 'SalBow5G3010' => 'sbo', 'Sc05g0000870' => 'sci', 'Sc05g0000890' => 'sci', 'Sc13g0005000' => 'sci', 'Sc13g0005030' => 'sci', 'Sc19g0003790' => 'sci', 'Sc19g0003800' => 'sci', 'Sed0003467' => 'sed', 'Sed0009355' => 'sed', 'Sed0009894' => 'sed', 'Sed0011972' => 'sed', 'Sed0021483' => 'sed', 'Sed0021750' => 'sed', 'Sed0026279' => 'sed', 'SEGI_05312' => 'sgi', 'SEGI_10112' => 'sgi', 'SEGI_15835' => 'sgi', 'SEGI_30386' => 'sgi', 'SEGI_34122' => 'sgi', 'SEGI_35063' => 'sgi', 'SGA_v2.0_scaffold101G29794' => 'sas', 'SGA_v2.0_scaffold1G00573' => 'sas', 'SGA_v2.0_scaffold79G25637' => 'sas', 'SGA_v2.0_scaffold88G27283' => 'sas', 'SGA_v2.0_scaffold88G27285' => 'sas', 'SGA_v2.0_scaffold88G27331' => 'sas', 'SHI09937' => 'shi', 'SMO119G0302' => 'smo', 'SMO137G0231' => 'smo', 'SMO367G1151' => 'smo', 'Solyc02g082000.3' => 'sly', 'Solyc06g031670.3' => 'sly', 'Solyc06g053810.3' => 'sly', 'Solyc07g025457.1' => 'sly', 'Solyc08g059740.1' => 'sly', 'Solyc08g059750.3' => 'sly', 'Solyc09g083370.3' => 'sly', 'Solyc12g038950.3' => 'sly', 'Sopen02g026630' => 'spe', 'Sopen06g018930' => 'spe', 'Sopen06g018940' => 'spe', 'Sopen08g009460' => 'spe', 'Sopen09g032290' => 'spe', 'Sp1g03080' => 'spa', 'Sp1g03090' => 'spa', 'Sp1g05480' => 'spa', 'Sp2g07860' => 'spa', 'Sp2g08430' => 'spa', 'Sp2g08440' => 'spa', 'Sp2g26200' => 'spa', 'Sp4g13170' => 'spa', 'Sp6g33840' => 'spa', 'SpUn1204_0010' => 'spa', 'TAR365G0908' => 'tar', 'TAR381G1270' => 'tar', 'TAR381G1651' => 'tar', 'TAR625G1131' => 'tar', 'TAR633G0962' => 'tar', 'TAR633G1729' => 'tar', 'TAR633G1864' => 'tar', 'TAR636G0221' => 'tar', 'TAR636G0314' => 'tar', 'TAR636G3202' => 'tar', 'THA.LOC104800805' => 'tha', 'THA.LOC104801096' => 'tha', 'THA.LOC104801555' => 'tha', 'THA.LOC104808491' => 'tha', 'THA.LOC104808595' => 'tha', 'THA.LOC104815985' => 'tha', 'THA.LOC104822250' => 'tha', 'THA.LOC104826071' => 'tha', 'Thecc.01G265200' => 'tca', 'Thecc.01G265300' => 'tca', 'Thecc.01G265700' => 'tca', 'Thecc.03G109100' => 'tca', 'Thecc.04G245900' => 'tca', 'Thecc.04G246000' => 'tca', 'Thhalv10003334m.g' => 'esa', 'Thhalv10005508m.g' => 'esa', 'Thhalv10005643m.g' => 'esa', 'Thhalv10007316m.g' => 'esa', 'Thhalv10009006m.g' => 'esa', 'Thhalv10009309m.g' => 'esa', 'Thhalv10014917m.g' => 'esa', 'Thhalv10014919m.g' => 'esa', 'Thhalv10015393m.g' => 'esa', 'Thhalv10016515m.g' => 'esa', 'Thhalv10029242m.g' => 'esa', 'TPR.G16654' => 'tpr', 'TPR.G20589' => 'tpr', 'TPR.G23029' => 'tpr', 'TPR.G27731' => 'tpr', 'TPR.G28889' => 'tpr', 'TPR.G28899' => 'tpr', 'TPR.G30846' => 'tpr', 'TPR.G5452' => 'tpr', 'TPR.G5713' => 'tpr', 'TPR.G9046' => 'tpr', 'TPR.G9061' => 'tpr', 'TWI09G1075' => 'twi', 'TWI12G0806' => 'twi', 'TWI18G0108' => 'twi', 'TWI53G1361' => 'twi', 'TWI73G0185' => 'twi', 'TWI73G0427' => 'twi', 'unitig_37.g12001' => 'ugi', 'unitig_747.g21660' => 'ugi', 'unitig_748.g7232' => 'ugi', 'unitig_748.g7315' => 'ugi', 'unitig_85.g27262' => 'ugi', 'unitig_92.g28220' => 'ugi', 'vmacro02632' => 'vma', 'vmacro08410' => 'vma', 'vmacro08411' => 'vma', 'vmacro15407' => 'vma', 'VMungo0251G3619' => 'vmu', 'VMungo0720G1204' => 'vmu', 'VMungo0720G1918' => 'vmu', 'VMungo0720G2387' => 'vmu', 'VMungo0720G2961' => 'vmu', 'VMungo1215G2154' => 'vmu', 'VMungo1383G2411' => 'vmu', 'Zm00001eb051130' => 'zma', 'Zm00001eb116830' => 'zma', 'Zm00001eb116850' => 'zma', 'Zm00001eb151740' => 'zma', 'Zm00001eb292360' => 'zma', 'Zm00001eb301640' => 'zma' ) $gf_id = 'HOM05D000856' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000856' ) $data_identifier = 'HOM05D000856' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 13, 'ath' => (int) 10, 'atr' => (int) 1, 'acertr' => (int) 8, 'cqu' => (int) 6, 'bca' => (int) 21, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 11, 'car' => (int) 9, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 8, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 5, 'fan' => (int) 16, 'fve' => (int) 6, 'gma' => (int) 11, 'ghi' => (int) 19, 'gra' => (int) 9, 'vvi' => (int) 7, 'han' => (int) 17, 'cav' => (int) 5, 'hma' => (int) 2, 'vpl' => (int) 2, 'sun' => (int) 7, 'lal' => (int) 9, 'lja' => (int) 5, 'lonja' => (int) 9, 'lsa' => (int) 5, 'mes' => (int) 8, 'mpo' => (int) 3, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 10, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 15, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 9, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 9, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 6, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 5, 'spa' => (int) 10, 'tar' => (int) 10, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 11, 'tpr' => (int) 11, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 4, 'vmu' => (int) 7, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb301640' $species_info = array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ) $local_species = 'lal' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000856', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p00010' => 'bna', 'A03p04160' => 'bna', 'A03p17160' => 'bna', 'A04p23370' => 'bna', 'A05p14860' => 'bna', 'A08p37020' => 'bna', 'A09p08050' => 'bna', 'A09p66800' => 'bna', 'A09p67940' => 'bna', 'A10p02680' => 'bna', 'A10p05320' => 'bna', 'Aa31LG1G20560' => 'aar', 'Aa31LG1G20610' => 'aar', 'Aa31LG1G7810' => 'aar', 'Aa31LG5G3590' => 'aar', 'Aa31LG5G6140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3819' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4683' => 'aag', 'Actinidia04480' => 'ach', 'Actinidia05466' => 'ach', 'Actinidia08445' => 'ach', 'Actinidia21170' => 'ach', 'Actinidia24812' => 'ach', 'Actinidia24951' => 'ach', 'Actinidia40088' => 'ach', 'Ah.02g111660' => 'amhyb', 'Ah.11g048900' => 'amhyb', 'Ah.11g049910' => 'amhyb', 'AL1G13870' => 'aly', 'AL1G13880' => 'aly', 'AL1G16760' => 'aly', 'AL390U10020' => 'aly', 'AL4G25520' => 'aly', 'AL6G19890' => 'aly', 'AL6G19900' => 'aly', 'AL6G19910' => 'aly', 'AL8G40100' => 'aly', 'Aqoxy2G03562' => 'aox', 'Aqoxy5G00316' => 'aox', 'Aqoxy5G00926' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1628KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1H403S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2FU6SJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.882I6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8YRY2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YN1SN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AF70II' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZA8L1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F916KL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHRD8H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KTZ8QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S22EMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8M29T' => 'arhy', 'AT1G04270' => 'ath', 'AT1G04280' => 'ath', 'AT1G06750' => 'ath', 'AT1G33850' => 'ath', 'AT2G30630' => 'ath', 'AT5G09490' => 'ath', 'AT5G09500' => 'ath', 'AT5G09510' => 'ath', 'AT5G43640' => 'ath', 'AT5G63070' => 'ath', 'ATR0605G315' => 'atr', 'Atru.chr11.175' => 'acertr', 'Atru.chr11.653' => 'acertr', 'Atru.chr3.1616' => 'acertr', 'Atru.chr4.2230' => 'acertr', 'Atru.chr4.2232' => 'acertr', 'Atru.chr5.1598' => 'acertr', 'Atru.chr5.1600' => 'acertr', 'Atru.chr5.2188' => 'acertr', 'AUR62008326' => 'cqu', 'AUR62011922' => 'cqu', 'AUR62011924' => 'cqu', 'AUR62021771' => 'cqu', 'AUR62032237' => 'cqu', 'AUR62032240' => 'cqu', 'BcaB01g05572' => 'bca', 'BcaB02g10337' => 'bca', 'BcaB04g19944' => 'bca', 'BcaB05g21548' => 'bca', 'BcaB05g21549' => 'bca', 'BcaB05g23227' => 'bca', 'BcaB06g26256' => 'bca', 'BcaB06g26257' => 'bca', 'BcaB06g28379' => 'bca', 'BcaC02g11159' => 'bca', 'BcaC03g13258' => 'bca', 'BcaC03g13259' => 'bca', 'BcaC05g24456' => 'bca', 'BcaC05g24457' => 'bca', 'BcaC07g36922' => 'bca', 'BcaC07g36923' => 'bca', 'BcaC07g42050' => 'bca', 'BcaC07g42176' => 'bca', 'BcaC07g42195' => 'bca', 'BcaC07g42196' => 'bca', 'BcaNung06674' => 'bca', 'BolC2t06351H' => 'bol', 'BolC2t06352H' => 'bol', 'BolC3t12993H' => 'bol', 'BolC4t23525H' => 'bol', 'BolC4t27475H' => 'bol', 'BolC5t29025H' => 'bol', 'BolC5t29026H' => 'bol', 'BolC8t46898H' => 'bol', 'BolC8t46899H' => 'bol', 'BolC8t52630H' => 'bol', 'BolC8t52765H' => 'bol', 'BolC9t53824H' => 'bol', 'BraA03t09760Z' => 'bra', 'BraA03t10990Z' => 'bra', 'BraA05t20413Z' => 'bra', 'BraA08t35602Z' => 'bra', 'BraA09t36458Z' => 'bra', 'BraA09t42018Z' => 'bra', 'BraA09t42129Z' => 'bra', 'BraA10t42536Z' => 'bra', 'BraA10t42537Z' => 'bra', 'C01p10690' => 'bna', 'C02p03890' => 'bna', 'C02p03900' => 'bna', 'C03p04620' => 'bna', 'C04p19870' => 'bna', 'C04p59670' => 'bna', 'C05p02460' => 'bna', 'C05p02470' => 'bna', 'C08p00980' => 'bna', 'C08p00990' => 'bna', 'C08p51030' => 'bna', 'C08p52360' => 'bna', 'C09p09120' => 'bna', 'CAN.G19.15' => 'can', 'CAN.G251.10' => 'can', 'CAN.G251.9' => 'can', 'CAN.G398.24' => 'can', 'CAN.G410.32' => 'can', 'CAN.G881.2' => 'can', 'CANSAT01G3025' => 'cansat', 'CANSAT78G1211' => 'cansat', 'CANSAT78G1218' => 'cansat', 'CANSAT78G1521' => 'cansat', 'CANSAT78G1670' => 'cansat', 'CARHR003600' => 'chi', 'CARHR003610' => 'chi', 'CARHR006290' => 'chi', 'CARHR006430' => 'chi', 'CARHR124110' => 'chi', 'CARHR203870' => 'chi', 'CARHR203880' => 'chi', 'CARHR203890' => 'chi', 'CARHR276880' => 'chi', 'Carub.0001s0346' => 'cru', 'Carub.0001s0347' => 'cru', 'Carub.0001s0607' => 'cru', 'Carub.0003s2768' => 'cru', 'Carub.0003s2769' => 'cru', 'Carub.0004s1178' => 'cru', 'Carub.0006s0806' => 'cru', 'Carub.0006s0807' => 'cru', 'Carub.0006s0808' => 'cru', 'Carub.0008s0501' => 'cru', 'Carub.0008s2379' => 'cru', 'Ca_08655_v3' => 'car', 'Ca_08922_v3' => 'car', 'Ca_08923_v3' => 'car', 'Ca_09119_v3' => 'car', 'Ca_09703_v3' => 'car', 'Ca_09705_v3' => 'car', 'Ca_09835_v3' => 'car', 'Ca_26403_v3' => 'car', 'Ca_30719_v3' => 'car', 'CBR_g17958' => 'cbr', 'CBR_g40516' => 'cbr', 'Cc00_g05350' => 'ccan', 'Cc01_g18690' => 'ccan', 'Cc03_g04830' => 'ccan', 'Cc03_g04850' => 'ccan', 'CDE02G4469' => 'cde', 'CDE06G0883' => 'cde', 'CDE06G1295' => 'cde', 'CDE06G1390' => 'cde', 'CDE07G0584' => 'cde', 'CDE07G1084' => 'cde', 'CDE08G1259' => 'cde', 'Cfa002341' => 'cfa', 'Cfa024337' => 'cfa', 'Ciclev10004749m.g' => 'ccl', 'Ciclev10006127m.g' => 'ccl', 'Ciclev10019720m.g' => 'ccl', 'Ciclev10022652m.g' => 'ccl', 'CiPaw.01G190400' => 'cil', 'CiPaw.01G190500' => 'cil', 'CiPaw.02G116400' => 'cil', 'CiPaw.02G116500' => 'cil', 'CiPaw.04G183000' => 'cil', 'CiPaw.04G183300' => 'cil', 'ClCG05G004610' => 'cla', 'ClCG05G004620' => 'cla', 'ClCG06G006730' => 'cla', 'ClCG06G006740' => 'cla', 'ClCG11G003690' => 'cla', 'COL.COLO4_08276' => 'col', 'COL.COLO4_08277' => 'col', 'COL.COLO4_15787' => 'col', 'COL.COLO4_15789' => 'col', 'Cpa.g.c44815' => 'cpa', 'Cpa.g.sc52.144' => 'cpa', 'Cpa.g.sc58.46' => 'cpa', 'Cpa.g.sc58.47' => 'cpa', 'Cre08.g360900' => 'cre', 'CsaV3_2G013030' => 'csa', 'CsaV3_2G013050' => 'csa', 'CsaV3_2G015620' => 'csa', 'CsaV3_3G012590' => 'csa', 'CsaV3_3G012600' => 'csa', 'CSS0001641' => 'camsi', 'CSS0008310' => 'camsi', 'CSS0013011' => 'camsi', 'CSS0017147' => 'camsi', 'CSS0022970' => 'camsi', 'CSS0025655' => 'camsi', 'CSS0028665' => 'camsi', 'CSS0029117' => 'camsi', 'CSS0032024' => 'camsi', 'CSS0039681' => 'camsi', 'CSS0046516' => 'camsi', 'CSS0050307' => 'camsi', 'DCAR_005871' => 'dca', 'DCAR_007342' => 'dca', 'DCAR_024228' => 'dca', 'DCAR_027277' => 'dca', 'DCAR_030718' => 'dca', 'Dinv20287' => 'din', 'Dinv22461' => 'din', 'Dinv22464' => 'din', 'Dinv29912' => 'din', 'Dinv29913' => 'din', 'Dinv34580' => 'din', 'Dinv34582' => 'din', 'Dinv44632' => 'din', 'Duzib052G0266' => 'dzi', 'Duzib133G0907' => 'dzi', 'Duzib133G1034' => 'dzi', 'Duzib138G0207' => 'dzi', 'Duzib138G0491' => 'dzi', 'Duzib151G0812' => 'dzi', 'Duzib151G1166' => 'dzi', 'Duzib168G0192' => 'dzi', 'Duzib211G0077' => 'dzi', 'Duzib212G0429' => 'dzi', 'Duzib212G0472' => 'dzi', 'ECA233G2617' => 'eca', 'ECA236G4188' => 'eca', 'ECA240G0936' => 'eca', 'ECA240G1129' => 'eca', 'ECA247G0623' => 'eca', 'EL10Ac5g10451' => 'bvu', 'EL10Ac5g10453' => 'bvu', 'EL10Ac5g10894' => 'bvu', 'Eucgr.H00192' => 'egr', 'Eucgr.H00193' => 'egr', 'Eucgr.H00194' => 'egr', 'Eucgr.J01562' => 'egr', 'Eucgr.K03301' => 'egr', 'FAN02G0632' => 'fan', 'FAN05G5378' => 'fan', 'FAN09G3247' => 'fan', 'FAN12G0435' => 'fan', 'FAN12G2426' => 'fan', 'FAN14G1707' => 'fan', 'FAN14G4725' => 'fan', 'FAN15G2071' => 'fan', 'FAN17G3065' => 'fan', 'FAN19G1376' => 'fan', 'FAN20G0354' => 'fan', 'FAN20G2429' => 'fan', 'FAN20G2658' => 'fan', 'FAN24G2343' => 'fan', 'FAN27G2362' => 'fan', 'FAN28G1765' => 'fan', 'FvH4_1g16020' => 'fve', 'FvH4_2g04890' => 'fve', 'FvH4_2g22270' => 'fve', 'FvH4_4g02630' => 'fve', 'FvH4_4g02640' => 'fve', 'FvH4_6g02650' => 'fve', 'Glyma.02G140600' => 'gma', 'Glyma.03G159900' => 'gma', 'Glyma.05G234800' => 'gma', 'Glyma.07G269600' => 'gma', 'Glyma.08G042300' => 'gma', 'Glyma.10G033500' => 'gma', 'Glyma.10G185200' => 'gma', 'Glyma.17G004300' => 'gma', 'Glyma.19G161900' => 'gma', 'Glyma.20G205100' => 'gma', 'Glyma.20G205200' => 'gma', 'Gohir.A01G139101' => 'ghi', 'Gohir.A02G035600' => 'ghi', 'Gohir.A02G117901' => 'ghi', 'Gohir.A07G210100' => 'ghi', 'Gohir.A07G210200' => 'ghi', 'Gohir.A08G061100' => 'ghi', 'Gohir.A09G223000' => 'ghi', 'Gohir.A09G223100' => 'ghi', 'Gohir.A10G113900' => 'ghi', 'Gohir.A10G114000' => 'ghi', 'Gohir.D02G042300' => 'ghi', 'Gohir.D07G216100' => 'ghi', 'Gohir.D07G216200' => 'ghi', 'Gohir.D08G070400' => 'ghi', 'Gohir.D09G225000' => 'ghi', 'Gohir.D09G225100' => 'ghi', 'Gohir.D10G152300' => 'ghi', 'Gohir.D10G153200' => 'ghi', 'Gohir.D11G133701' => 'ghi', 'Gorai.004G074100' => 'gra', 'Gorai.005G046800' => 'gra', 'Gorai.006G246500' => 'gra', 'Gorai.006G246600' => 'gra', 'Gorai.007G142900' => 'gra', 'Gorai.011G171000' => 'gra', 'Gorai.011G171100' => 'gra', 'Gorai.013G104300' => 'gra', 'Gorai.013G104400' => 'gra', 'GSVIVG01000754001' => 'vvi', 'GSVIVG01000756001' => 'vvi', 'GSVIVG01010903001' => 'vvi', 'GSVIVG01017623001' => 'vvi', 'GSVIVG01018113001' => 'vvi', 'GSVIVG01018116001' => 'vvi', 'GSVIVG01018118001' => 'vvi', 'HanXRQChr03g0076211' => 'han', 'HanXRQChr03g0092431' => 'han', 'HanXRQChr03g0092441' => 'han', 'HanXRQChr03g0092591' => 'han', 'HanXRQChr03g0092671' => 'han', 'HanXRQChr03g0092681' => 'han', 'HanXRQChr03g0092691' => 'han', 'HanXRQChr03g0092701' => 'han', 'HanXRQChr03g0092721' => 'han', 'HanXRQChr03g0092731' => 'han', 'HanXRQChr04g0113681' => 'han', 'HanXRQChr10g0281371' => 'han', 'HanXRQChr11g0337141' => 'han', 'HanXRQChr13g0424521' => 'han', 'HanXRQChr13g0424531' => 'han', 'HanXRQChr13g0424541' => 'han', 'HanXRQChr16g0498221' => 'han', 'Haze_04377' => 'cav', 'Haze_11298' => 'cav', 'Haze_24547' => 'cav', 'Haze_24550' => 'cav', 'Haze_26587' => 'cav', 'Hma1.2p1_0650F.1_g195410' => 'hma', 'Hma1.2p1_0893F.1_g233470' => 'hma', 'HPP92_006508' => 'vpl', 'HPP92_024780' => 'vpl', 'Hund02688' => 'sun', 'Hund09380' => 'sun', 'Hund09381' => 'sun', 'Hund09832' => 'sun', 'Hund09833' => 'sun', 'Hund11351' => 'sun', 'Hund11513' => 'sun', 'Lalb_Chr06g0162591' => 'lal', 'Lalb_Chr06g0162601' => 'lal', 'Lalb_Chr06g0169321' => 'lal', 'Lalb_Chr09g0330951' => 'lal', 'Lalb_Chr16g0387631' => 'lal', 'Lalb_Chr21g0306241' => 'lal', 'Lalb_Chr25g0290051' => 'lal', 'Lalb_Chr25g0290061' => 'lal', 'Lalb_Chr25g0290071' => 'lal', 'Lj1g0003876' => 'lja', 'Lj1P1207T36' => 'lonja', 'Lj2C1156G12' => 'lonja', 'Lj3A793G39' => 'lonja', 'Lj3C580G2' => 'lonja', 'Lj3C780G2' => 'lonja', 'Lj3C780T4' => 'lonja', 'Lj3C793G9' => 'lonja', 'Lj4g0012960' => 'lja', 'Lj5g0021252' => 'lja', 'Lj5g0021484' => 'lja', 'Lj5g0024528' => 'lja', 'Lj6A399T12' => 'lonja', 'Lj6A656G65' => 'lonja', 'Lsat_1_v5_gn_3_125500' => 'lsa', 'Lsat_1_v5_gn_3_125540' => 'lsa', 'Lsat_1_v5_gn_5_72701' => 'lsa', 'Lsat_1_v5_gn_8_91560' => 'lsa', 'Lsat_1_v5_gn_9_9640' => 'lsa', 'Manes.01G200600' => 'mes', 'Manes.01G200700' => 'mes', 'Manes.03G168900' => 'mes', 'Manes.03G169000' => 'mes', 'Manes.05G085801' => 'mes', 'Manes.05G086200' => 'mes', 'Manes.15G036700' => 'mes', 'Manes.15G036900' => 'mes', 'Mapoly0004s0172' => 'mpo', 'Mapoly0023s0001' => 'mpo', 'Mapoly0142s0012' => 'mpo', 'MBI01_g32854_MAGBIO' => 'mbi', 'MBI11_g24427_MAGBIO' => 'mbi', 'MBI11_g47319_MAGBIO' => 'mbi', 'MCO01G433' => 'mco', 'MD00G1187800' => 'mdo', 'MD04G1226500' => 'mdo', 'MD05G1203900' => 'mdo', 'MD10G1191100' => 'mdo', 'MD12G1243500' => 'mdo', 'MD13G1207000' => 'mdo', 'MD13G1207100' => 'mdo', 'MD16G1208600' => 'mdo', 'Medtr1g050352' => 'mtr', 'Medtr1g070385' => 'mtr', 'Medtr1g070450' => 'mtr', 'Medtr1g075200' => 'mtr', 'Medtr1g075250' => 'mtr', 'Medtr1g075260' => 'mtr', 'Medtr1g475250' => 'mtr', 'Medtr4g075450' => 'mtr', 'Medtr7g096300' => 'mtr', 'Medtr8g105110' => 'mtr', 'MELO3C006470.2' => 'cme', 'MELO3C006471.2' => 'cme', 'MELO3C020772.2' => 'cme', 'MELO3C026780.2' => 'cme', 'MELO3C026781.2' => 'cme', 'Migut.D00390' => 'egut', 'Migut.G00435' => 'egut', 'Migut.G00436' => 'egut', 'Migut.G00718' => 'egut', 'MSTRG.21891' => 'ama', 'MSTRG.26910' => 'ama', 'MSTRG.4099' => 'ama', 'MSTRG.9925' => 'ama', 'Nitab4.5_0000165g0010' => 'nta', 'Nitab4.5_0000209g0180' => 'nta', 'Nitab4.5_0000244g0440' => 'nta', 'Nitab4.5_0000525g0220' => 'nta', 'Nitab4.5_0001597g0020' => 'nta', 'Nitab4.5_0001878g0040' => 'nta', 'Nitab4.5_0001878g0060' => 'nta', 'Nitab4.5_0002838g0100' => 'nta', 'Nitab4.5_0002838g0120' => 'nta', 'Nitab4.5_0004798g0030' => 'nta', 'Nitab4.5_0005420g0010' => 'nta', 'Nitab4.5_0005507g0010' => 'nta', 'Nitab4.5_0005574g0020' => 'nta', 'Nitab4.5_0005838g0010' => 'nta', 'Nitab4.5_0010580g0020' => 'nta', 'Nn1g02599' => 'nnu', 'Nn1g02608' => 'nnu', 'Nn3g17742' => 'nnu', 'Nn3g19534' => 'nnu', 'Nn3g19535' => 'nnu', 'Oeu008790.1' => 'oeu', 'Oeu008792.1' => 'oeu', 'Oeu032590.1' => 'oeu', 'Oeu035349.1' => 'oeu', 'Oeu049791.1' => 'oeu', 'Os01g0774500' => 'osa', 'Os03g0628800' => 'osa', 'Os03g0798600' => 'osa', 'Os05g0508800' => 'osa', 'Peaxi162Scf00036g02018' => 'pax', 'Peaxi162Scf00578g00032' => 'pax', 'Peaxi162Scf00578g00317' => 'pax', 'Peaxi162Scf00785g00114' => 'pax', 'Peaxi162Scf00813g00119' => 'pax', 'Peaxi162Scf00906g00227' => 'pax', 'PGR004G0875' => 'pgr', 'PGR004G2424' => 'pgr', 'PGR031G1239' => 'pgr', 'PGR031G2474' => 'pgr', 'PGR044G0423' => 'pgr', 'PGSC0003DMG400001128' => 'stu', 'PGSC0003DMG400007336' => 'stu', 'PGSC0003DMG400016318' => 'stu', 'PGSC0003DMG400016319' => 'stu', 'PGSC0003DMG400018074' => 'stu', 'Phvul.001G157700' => 'pvu', 'Phvul.002G148550' => 'pvu', 'Phvul.002G320200' => 'pvu', 'Phvul.003G089200' => 'pvu', 'Phvul.007G126000' => 'pvu', 'Phvul.007G126100' => 'pvu', 'Phvul.007G178000' => 'pvu', 'Phvul.007G178200' => 'pvu', 'Potri.002G043000' => 'ptr', 'Potri.002G043200' => 'ptr', 'Potri.003G123750' => 'ptr', 'Potri.005G055401' => 'ptr', 'Potri.005G219700' => 'ptr', 'Potri.005G220000' => 'ptr', 'Potri.008G161901' => 'ptr', 'Potri.008G162000' => 'ptr', 'Potri.008G162400' => 'ptr', 'Potri.010G076900' => 'ptr', 'Pp3c12_9180' => 'ppa', 'Pp3c13_19770' => 'ppa', 'Pp3c14_22950' => 'ppa', 'Pp3c16_12160' => 'ppa', 'Pp3c27_7820' => 'ppa', 'Pp3c2_3490' => 'ppa', 'Pp3c3_23700' => 'ppa', 'Pp3c3_36520' => 'ppa', 'Pp3c4_15250' => 'ppa', 'PRCOL_00007002' => 'pco', 'Prupe.1G030600' => 'ppe', 'Prupe.1G030700' => 'ppe', 'Prupe.6G345200' => 'ppe', 'Prupe.8G230300' => 'ppe', 'Prupe.8G230500' => 'ppe', 'Psat3g059600' => 'psa', 'Psat5g200920' => 'psa', 'Psat6g056440' => 'psa', 'Psat6g057360' => 'psa', 'Psat6g134120' => 'psa', 'Psat6g134160' => 'psa', 'Psat7g008640' => 'psa', 'Psat7g185240' => 'psa', 'PSO017G1330' => 'pso', 'PSO063G6097' => 'pso', 'PSO170G0835' => 'pso', 'PSO170G2499' => 'pso', 'PSO210G5058' => 'pso', 'PSO210G6154' => 'pso', 'PSO585G0031' => 'pso', 'PSO832G0264' => 'pso', 'PSO832G4288' => 'pso', 'QL03p027355' => 'qlo', 'QL03p027430' => 'qlo', 'QL04p081380' => 'qlo', 'QL06p015642' => 'qlo', 'QL06p015650' => 'qlo', 'QL06p015686' => 'qlo', 'QL12p042927' => 'qlo', 'QL93p1863_0035' => 'qlo', 'RcHm_v2.0_Chr3g0450581' => 'rch', 'RcHm_v2.0_Chr4g0390371' => 'rch', 'RcHm_v2.0_Chr4g0390381' => 'rch', 'RcHm_v2.0_Chr4g0390491' => 'rch', 'RcHm_v2.0_Chr4g0390501' => 'rch', 'RcHm_v2.0_Chr6g0289231' => 'rch', 'Rhsim04G0190400' => 'rsi', 'Rhsim04G0190500' => 'rsi', 'Rhsim04G0190600' => 'rsi', 'Rhsim13G0031400' => 'rsi', 'Rhsim13G0165600' => 'rsi', 'RhsimUnG0114600' => 'rsi', 'RhsimUnG0114700' => 'rsi', 'Sabra02G0034800' => 'sbr', 'Sabra02G0035100' => 'sbr', 'Sabra05G0168600' => 'sbr', 'Sabra05G0168800' => 'sbr', 'Sabra08G0123700' => 'sbr', 'Sabra10G0031900' => 'sbr', 'Sabra13G0039000' => 'sbr', 'SalBow2G0782' => 'sbo', 'SalBow2G1403' => 'sbo', 'SalBow4G0074' => 'sbo', 'SalBow4G2635' => 'sbo', 'SalBow5G3010' => 'sbo', 'Sc05g0000870' => 'sci', 'Sc05g0000890' => 'sci', 'Sc13g0005000' => 'sci', 'Sc13g0005030' => 'sci', 'Sc19g0003790' => 'sci', 'Sc19g0003800' => 'sci', 'Sed0003467' => 'sed', 'Sed0009355' => 'sed', 'Sed0009894' => 'sed', 'Sed0011972' => 'sed', 'Sed0021483' => 'sed', 'Sed0021750' => 'sed', 'Sed0026279' => 'sed', 'SEGI_05312' => 'sgi', 'SEGI_10112' => 'sgi', 'SEGI_15835' => 'sgi', 'SEGI_30386' => 'sgi', 'SEGI_34122' => 'sgi', 'SEGI_35063' => 'sgi', 'SGA_v2.0_scaffold101G29794' => 'sas', 'SGA_v2.0_scaffold1G00573' => 'sas', 'SGA_v2.0_scaffold79G25637' => 'sas', 'SGA_v2.0_scaffold88G27283' => 'sas', 'SGA_v2.0_scaffold88G27285' => 'sas', 'SGA_v2.0_scaffold88G27331' => 'sas', 'SHI09937' => 'shi', 'SMO119G0302' => 'smo', 'SMO137G0231' => 'smo', 'SMO367G1151' => 'smo', 'Solyc02g082000.3' => 'sly', 'Solyc06g031670.3' => 'sly', 'Solyc06g053810.3' => 'sly', 'Solyc07g025457.1' => 'sly', 'Solyc08g059740.1' => 'sly', 'Solyc08g059750.3' => 'sly', 'Solyc09g083370.3' => 'sly', 'Solyc12g038950.3' => 'sly', 'Sopen02g026630' => 'spe', 'Sopen06g018930' => 'spe', 'Sopen06g018940' => 'spe', 'Sopen08g009460' => 'spe', 'Sopen09g032290' => 'spe', 'Sp1g03080' => 'spa', 'Sp1g03090' => 'spa', 'Sp1g05480' => 'spa', 'Sp2g07860' => 'spa', 'Sp2g08430' => 'spa', 'Sp2g08440' => 'spa', 'Sp2g26200' => 'spa', 'Sp4g13170' => 'spa', 'Sp6g33840' => 'spa', 'SpUn1204_0010' => 'spa', 'TAR365G0908' => 'tar', 'TAR381G1270' => 'tar', 'TAR381G1651' => 'tar', 'TAR625G1131' => 'tar', 'TAR633G0962' => 'tar', 'TAR633G1729' => 'tar', 'TAR633G1864' => 'tar', 'TAR636G0221' => 'tar', 'TAR636G0314' => 'tar', 'TAR636G3202' => 'tar', 'THA.LOC104800805' => 'tha', 'THA.LOC104801096' => 'tha', 'THA.LOC104801555' => 'tha', 'THA.LOC104808491' => 'tha', 'THA.LOC104808595' => 'tha', 'THA.LOC104815985' => 'tha', 'THA.LOC104822250' => 'tha', 'THA.LOC104826071' => 'tha', 'Thecc.01G265200' => 'tca', 'Thecc.01G265300' => 'tca', 'Thecc.01G265700' => 'tca', 'Thecc.03G109100' => 'tca', 'Thecc.04G245900' => 'tca', 'Thecc.04G246000' => 'tca', 'Thhalv10003334m.g' => 'esa', 'Thhalv10005508m.g' => 'esa', 'Thhalv10005643m.g' => 'esa', 'Thhalv10007316m.g' => 'esa', 'Thhalv10009006m.g' => 'esa', 'Thhalv10009309m.g' => 'esa', 'Thhalv10014917m.g' => 'esa', 'Thhalv10014919m.g' => 'esa', 'Thhalv10015393m.g' => 'esa', 'Thhalv10016515m.g' => 'esa', 'Thhalv10029242m.g' => 'esa', 'TPR.G16654' => 'tpr', 'TPR.G20589' => 'tpr', 'TPR.G23029' => 'tpr', 'TPR.G27731' => 'tpr', 'TPR.G28889' => 'tpr', 'TPR.G28899' => 'tpr', 'TPR.G30846' => 'tpr', 'TPR.G5452' => 'tpr', 'TPR.G5713' => 'tpr', 'TPR.G9046' => 'tpr', 'TPR.G9061' => 'tpr', 'TWI09G1075' => 'twi', 'TWI12G0806' => 'twi', 'TWI18G0108' => 'twi', 'TWI53G1361' => 'twi', 'TWI73G0185' => 'twi', 'TWI73G0427' => 'twi', 'unitig_37.g12001' => 'ugi', 'unitig_747.g21660' => 'ugi', 'unitig_748.g7232' => 'ugi', 'unitig_748.g7315' => 'ugi', 'unitig_85.g27262' => 'ugi', 'unitig_92.g28220' => 'ugi', 'vmacro02632' => 'vma', 'vmacro08410' => 'vma', 'vmacro08411' => 'vma', 'vmacro15407' => 'vma', 'VMungo0251G3619' => 'vmu', 'VMungo0720G1204' => 'vmu', 'VMungo0720G1918' => 'vmu', 'VMungo0720G2387' => 'vmu', 'VMungo0720G2961' => 'vmu', 'VMungo1215G2154' => 'vmu', 'VMungo1383G2411' => 'vmu', 'Zm00001eb051130' => 'zma', 'Zm00001eb116830' => 'zma', 'Zm00001eb116850' => 'zma', 'Zm00001eb151740' => 'zma', 'Zm00001eb292360' => 'zma', 'Zm00001eb301640' => 'zma' ), 'gf_id' => 'HOM05D000856', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000856' ), 'data_identifier' => 'HOM05D000856', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000856', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p00010' => 'bna', 'A03p04160' => 'bna', 'A03p17160' => 'bna', 'A04p23370' => 'bna', 'A05p14860' => 'bna', 'A08p37020' => 'bna', 'A09p08050' => 'bna', 'A09p66800' => 'bna', 'A09p67940' => 'bna', 'A10p02680' => 'bna', 'A10p05320' => 'bna', 'Aa31LG1G20560' => 'aar', 'Aa31LG1G20610' => 'aar', 'Aa31LG1G7810' => 'aar', 'Aa31LG5G3590' => 'aar', 'Aa31LG5G6140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3819' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4683' => 'aag', 'Actinidia04480' => 'ach', 'Actinidia05466' => 'ach', 'Actinidia08445' => 'ach', 'Actinidia21170' => 'ach', 'Actinidia24812' => 'ach', 'Actinidia24951' => 'ach', 'Actinidia40088' => 'ach', 'Ah.02g111660' => 'amhyb', 'Ah.11g048900' => 'amhyb', 'Ah.11g049910' => 'amhyb', 'AL1G13870' => 'aly', 'AL1G13880' => 'aly', 'AL1G16760' => 'aly', 'AL390U10020' => 'aly', 'AL4G25520' => 'aly', 'AL6G19890' => 'aly', 'AL6G19900' => 'aly', 'AL6G19910' => 'aly', 'AL8G40100' => 'aly', 'Aqoxy2G03562' => 'aox', 'Aqoxy5G00316' => 'aox', 'Aqoxy5G00926' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1628KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1H403S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2FU6SJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.882I6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8YRY2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YN1SN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AF70II' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZA8L1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F916KL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHRD8H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KTZ8QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S22EMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8M29T' => 'arhy', 'AT1G04270' => 'ath', 'AT1G04280' => 'ath', 'AT1G06750' => 'ath', 'AT1G33850' => 'ath', 'AT2G30630' => 'ath', 'AT5G09490' => 'ath', 'AT5G09500' => 'ath', 'AT5G09510' => 'ath', 'AT5G43640' => 'ath', 'AT5G63070' => 'ath', 'ATR0605G315' => 'atr', 'Atru.chr11.175' => 'acertr', 'Atru.chr11.653' => 'acertr', 'Atru.chr3.1616' => 'acertr', 'Atru.chr4.2230' => 'acertr', 'Atru.chr4.2232' => 'acertr', 'Atru.chr5.1598' => 'acertr', 'Atru.chr5.1600' => 'acertr', 'Atru.chr5.2188' => 'acertr', 'AUR62008326' => 'cqu', 'AUR62011922' => 'cqu', 'AUR62011924' => 'cqu', 'AUR62021771' => 'cqu', 'AUR62032237' => 'cqu', 'AUR62032240' => 'cqu', 'BcaB01g05572' => 'bca', 'BcaB02g10337' => 'bca', 'BcaB04g19944' => 'bca', 'BcaB05g21548' => 'bca', 'BcaB05g21549' => 'bca', 'BcaB05g23227' => 'bca', 'BcaB06g26256' => 'bca', 'BcaB06g26257' => 'bca', 'BcaB06g28379' => 'bca', 'BcaC02g11159' => 'bca', 'BcaC03g13258' => 'bca', 'BcaC03g13259' => 'bca', 'BcaC05g24456' => 'bca', 'BcaC05g24457' => 'bca', 'BcaC07g36922' => 'bca', 'BcaC07g36923' => 'bca', 'BcaC07g42050' => 'bca', 'BcaC07g42176' => 'bca', 'BcaC07g42195' => 'bca', 'BcaC07g42196' => 'bca', 'BcaNung06674' => 'bca', 'BolC2t06351H' => 'bol', 'BolC2t06352H' => 'bol', 'BolC3t12993H' => 'bol', 'BolC4t23525H' => 'bol', 'BolC4t27475H' => 'bol', 'BolC5t29025H' => 'bol', 'BolC5t29026H' => 'bol', 'BolC8t46898H' => 'bol', 'BolC8t46899H' => 'bol', 'BolC8t52630H' => 'bol', 'BolC8t52765H' => 'bol', 'BolC9t53824H' => 'bol', 'BraA03t09760Z' => 'bra', 'BraA03t10990Z' => 'bra', 'BraA05t20413Z' => 'bra', 'BraA08t35602Z' => 'bra', 'BraA09t36458Z' => 'bra', 'BraA09t42018Z' => 'bra', 'BraA09t42129Z' => 'bra', 'BraA10t42536Z' => 'bra', 'BraA10t42537Z' => 'bra', 'C01p10690' => 'bna', 'C02p03890' => 'bna', 'C02p03900' => 'bna', 'C03p04620' => 'bna', 'C04p19870' => 'bna', 'C04p59670' => 'bna', 'C05p02460' => 'bna', 'C05p02470' => 'bna', 'C08p00980' => 'bna', 'C08p00990' => 'bna', 'C08p51030' => 'bna', 'C08p52360' => 'bna', 'C09p09120' => 'bna', 'CAN.G19.15' => 'can', 'CAN.G251.10' => 'can', 'CAN.G251.9' => 'can', 'CAN.G398.24' => 'can', 'CAN.G410.32' => 'can', 'CAN.G881.2' => 'can', 'CANSAT01G3025' => 'cansat', 'CANSAT78G1211' => 'cansat', 'CANSAT78G1218' => 'cansat', 'CANSAT78G1521' => 'cansat', 'CANSAT78G1670' => 'cansat', 'CARHR003600' => 'chi', 'CARHR003610' => 'chi', 'CARHR006290' => 'chi', 'CARHR006430' => 'chi', 'CARHR124110' => 'chi', 'CARHR203870' => 'chi', 'CARHR203880' => 'chi', 'CARHR203890' => 'chi', 'CARHR276880' => 'chi', 'Carub.0001s0346' => 'cru', 'Carub.0001s0347' => 'cru', 'Carub.0001s0607' => 'cru', 'Carub.0003s2768' => 'cru', 'Carub.0003s2769' => 'cru', 'Carub.0004s1178' => 'cru', 'Carub.0006s0806' => 'cru', 'Carub.0006s0807' => 'cru', 'Carub.0006s0808' => 'cru', 'Carub.0008s0501' => 'cru', 'Carub.0008s2379' => 'cru', 'Ca_08655_v3' => 'car', 'Ca_08922_v3' => 'car', 'Ca_08923_v3' => 'car', 'Ca_09119_v3' => 'car', 'Ca_09703_v3' => 'car', 'Ca_09705_v3' => 'car', 'Ca_09835_v3' => 'car', 'Ca_26403_v3' => 'car', 'Ca_30719_v3' => 'car', 'CBR_g17958' => 'cbr', 'CBR_g40516' => 'cbr', 'Cc00_g05350' => 'ccan', 'Cc01_g18690' => 'ccan', 'Cc03_g04830' => 'ccan', 'Cc03_g04850' => 'ccan', 'CDE02G4469' => 'cde', 'CDE06G0883' => 'cde', 'CDE06G1295' => 'cde', 'CDE06G1390' => 'cde', 'CDE07G0584' => 'cde', 'CDE07G1084' => 'cde', 'CDE08G1259' => 'cde', 'Cfa002341' => 'cfa', 'Cfa024337' => 'cfa', 'Ciclev10004749m.g' => 'ccl', 'Ciclev10006127m.g' => 'ccl', 'Ciclev10019720m.g' => 'ccl', 'Ciclev10022652m.g' => 'ccl', 'CiPaw.01G190400' => 'cil', 'CiPaw.01G190500' => 'cil', 'CiPaw.02G116400' => 'cil', 'CiPaw.02G116500' => 'cil', 'CiPaw.04G183000' => 'cil', 'CiPaw.04G183300' => 'cil', 'ClCG05G004610' => 'cla', 'ClCG05G004620' => 'cla', 'ClCG06G006730' => 'cla', 'ClCG06G006740' => 'cla', 'ClCG11G003690' => 'cla', 'COL.COLO4_08276' => 'col', 'COL.COLO4_08277' => 'col', 'COL.COLO4_15787' => 'col', 'COL.COLO4_15789' => 'col', 'Cpa.g.c44815' => 'cpa', 'Cpa.g.sc52.144' => 'cpa', 'Cpa.g.sc58.46' => 'cpa', 'Cpa.g.sc58.47' => 'cpa', 'Cre08.g360900' => 'cre', 'CsaV3_2G013030' => 'csa', 'CsaV3_2G013050' => 'csa', 'CsaV3_2G015620' => 'csa', 'CsaV3_3G012590' => 'csa', 'CsaV3_3G012600' => 'csa', 'CSS0001641' => 'camsi', 'CSS0008310' => 'camsi', 'CSS0013011' => 'camsi', 'CSS0017147' => 'camsi', 'CSS0022970' => 'camsi', 'CSS0025655' => 'camsi', 'CSS0028665' => 'camsi', 'CSS0029117' => 'camsi', 'CSS0032024' => 'camsi', 'CSS0039681' => 'camsi', 'CSS0046516' => 'camsi', 'CSS0050307' => 'camsi', 'DCAR_005871' => 'dca', 'DCAR_007342' => 'dca', 'DCAR_024228' => 'dca', 'DCAR_027277' => 'dca', 'DCAR_030718' => 'dca', 'Dinv20287' => 'din', 'Dinv22461' => 'din', 'Dinv22464' => 'din', 'Dinv29912' => 'din', 'Dinv29913' => 'din', 'Dinv34580' => 'din', 'Dinv34582' => 'din', 'Dinv44632' => 'din', 'Duzib052G0266' => 'dzi', 'Duzib133G0907' => 'dzi', 'Duzib133G1034' => 'dzi', 'Duzib138G0207' => 'dzi', 'Duzib138G0491' => 'dzi', 'Duzib151G0812' => 'dzi', 'Duzib151G1166' => 'dzi', 'Duzib168G0192' => 'dzi', 'Duzib211G0077' => 'dzi', 'Duzib212G0429' => 'dzi', 'Duzib212G0472' => 'dzi', 'ECA233G2617' => 'eca', 'ECA236G4188' => 'eca', 'ECA240G0936' => 'eca', 'ECA240G1129' => 'eca', 'ECA247G0623' => 'eca', 'EL10Ac5g10451' => 'bvu', 'EL10Ac5g10453' => 'bvu', 'EL10Ac5g10894' => 'bvu', 'Eucgr.H00192' => 'egr', 'Eucgr.H00193' => 'egr', 'Eucgr.H00194' => 'egr', 'Eucgr.J01562' => 'egr', 'Eucgr.K03301' => 'egr', 'FAN02G0632' => 'fan', 'FAN05G5378' => 'fan', 'FAN09G3247' => 'fan', 'FAN12G0435' => 'fan', 'FAN12G2426' => 'fan', 'FAN14G1707' => 'fan', 'FAN14G4725' => 'fan', 'FAN15G2071' => 'fan', 'FAN17G3065' => 'fan', 'FAN19G1376' => 'fan', 'FAN20G0354' => 'fan', 'FAN20G2429' => 'fan', 'FAN20G2658' => 'fan', 'FAN24G2343' => 'fan', 'FAN27G2362' => 'fan', 'FAN28G1765' => 'fan', 'FvH4_1g16020' => 'fve', 'FvH4_2g04890' => 'fve', 'FvH4_2g22270' => 'fve', 'FvH4_4g02630' => 'fve', 'FvH4_4g02640' => 'fve', 'FvH4_6g02650' => 'fve', 'Glyma.02G140600' => 'gma', 'Glyma.03G159900' => 'gma', 'Glyma.05G234800' => 'gma', 'Glyma.07G269600' => 'gma', 'Glyma.08G042300' => 'gma', 'Glyma.10G033500' => 'gma', 'Glyma.10G185200' => 'gma', 'Glyma.17G004300' => 'gma', 'Glyma.19G161900' => 'gma', 'Glyma.20G205100' => 'gma', 'Glyma.20G205200' => 'gma', 'Gohir.A01G139101' => 'ghi', 'Gohir.A02G035600' => 'ghi', 'Gohir.A02G117901' => 'ghi', 'Gohir.A07G210100' => 'ghi', 'Gohir.A07G210200' => 'ghi', 'Gohir.A08G061100' => 'ghi', 'Gohir.A09G223000' => 'ghi', 'Gohir.A09G223100' => 'ghi', 'Gohir.A10G113900' => 'ghi', 'Gohir.A10G114000' => 'ghi', 'Gohir.D02G042300' => 'ghi', 'Gohir.D07G216100' => 'ghi', 'Gohir.D07G216200' => 'ghi', 'Gohir.D08G070400' => 'ghi', 'Gohir.D09G225000' => 'ghi', 'Gohir.D09G225100' => 'ghi', 'Gohir.D10G152300' => 'ghi', 'Gohir.D10G153200' => 'ghi', 'Gohir.D11G133701' => 'ghi', 'Gorai.004G074100' => 'gra', 'Gorai.005G046800' => 'gra', 'Gorai.006G246500' => 'gra', 'Gorai.006G246600' => 'gra', 'Gorai.007G142900' => 'gra', 'Gorai.011G171000' => 'gra', 'Gorai.011G171100' => 'gra', 'Gorai.013G104300' => 'gra', 'Gorai.013G104400' => 'gra', 'GSVIVG01000754001' => 'vvi', 'GSVIVG01000756001' => 'vvi', 'GSVIVG01010903001' => 'vvi', 'GSVIVG01017623001' => 'vvi', 'GSVIVG01018113001' => 'vvi', 'GSVIVG01018116001' => 'vvi', 'GSVIVG01018118001' => 'vvi', 'HanXRQChr03g0076211' => 'han', 'HanXRQChr03g0092431' => 'han', 'HanXRQChr03g0092441' => 'han', 'HanXRQChr03g0092591' => 'han', 'HanXRQChr03g0092671' => 'han', 'HanXRQChr03g0092681' => 'han', 'HanXRQChr03g0092691' => 'han', 'HanXRQChr03g0092701' => 'han', 'HanXRQChr03g0092721' => 'han', 'HanXRQChr03g0092731' => 'han', 'HanXRQChr04g0113681' => 'han', 'HanXRQChr10g0281371' => 'han', 'HanXRQChr11g0337141' => 'han', 'HanXRQChr13g0424521' => 'han', 'HanXRQChr13g0424531' => 'han', 'HanXRQChr13g0424541' => 'han', 'HanXRQChr16g0498221' => 'han', 'Haze_04377' => 'cav', 'Haze_11298' => 'cav', 'Haze_24547' => 'cav', 'Haze_24550' => 'cav', 'Haze_26587' => 'cav', 'Hma1.2p1_0650F.1_g195410' => 'hma', 'Hma1.2p1_0893F.1_g233470' => 'hma', 'HPP92_006508' => 'vpl', 'HPP92_024780' => 'vpl', 'Hund02688' => 'sun', 'Hund09380' => 'sun', 'Hund09381' => 'sun', 'Hund09832' => 'sun', 'Hund09833' => 'sun', 'Hund11351' => 'sun', 'Hund11513' => 'sun', 'Lalb_Chr06g0162591' => 'lal', 'Lalb_Chr06g0162601' => 'lal', 'Lalb_Chr06g0169321' => 'lal', 'Lalb_Chr09g0330951' => 'lal', 'Lalb_Chr16g0387631' => 'lal', 'Lalb_Chr21g0306241' => 'lal', 'Lalb_Chr25g0290051' => 'lal', 'Lalb_Chr25g0290061' => 'lal', 'Lalb_Chr25g0290071' => 'lal', 'Lj1g0003876' => 'lja', 'Lj1P1207T36' => 'lonja', 'Lj2C1156G12' => 'lonja', 'Lj3A793G39' => 'lonja', 'Lj3C580G2' => 'lonja', 'Lj3C780G2' => 'lonja', 'Lj3C780T4' => 'lonja', 'Lj3C793G9' => 'lonja', 'Lj4g0012960' => 'lja', 'Lj5g0021252' => 'lja', 'Lj5g0021484' => 'lja', 'Lj5g0024528' => 'lja', 'Lj6A399T12' => 'lonja', 'Lj6A656G65' => 'lonja', 'Lsat_1_v5_gn_3_125500' => 'lsa', 'Lsat_1_v5_gn_3_125540' => 'lsa', 'Lsat_1_v5_gn_5_72701' => 'lsa', 'Lsat_1_v5_gn_8_91560' => 'lsa', 'Lsat_1_v5_gn_9_9640' => 'lsa', 'Manes.01G200600' => 'mes', 'Manes.01G200700' => 'mes', 'Manes.03G168900' => 'mes', 'Manes.03G169000' => 'mes', 'Manes.05G085801' => 'mes', 'Manes.05G086200' => 'mes', 'Manes.15G036700' => 'mes', 'Manes.15G036900' => 'mes', 'Mapoly0004s0172' => 'mpo', 'Mapoly0023s0001' => 'mpo', 'Mapoly0142s0012' => 'mpo', 'MBI01_g32854_MAGBIO' => 'mbi', 'MBI11_g24427_MAGBIO' => 'mbi', 'MBI11_g47319_MAGBIO' => 'mbi', 'MCO01G433' => 'mco', 'MD00G1187800' => 'mdo', 'MD04G1226500' => 'mdo', 'MD05G1203900' => 'mdo', 'MD10G1191100' => 'mdo', 'MD12G1243500' => 'mdo', 'MD13G1207000' => 'mdo', 'MD13G1207100' => 'mdo', 'MD16G1208600' => 'mdo', 'Medtr1g050352' => 'mtr', 'Medtr1g070385' => 'mtr', 'Medtr1g070450' => 'mtr', 'Medtr1g075200' => 'mtr', 'Medtr1g075250' => 'mtr', 'Medtr1g075260' => 'mtr', 'Medtr1g475250' => 'mtr', 'Medtr4g075450' => 'mtr', 'Medtr7g096300' => 'mtr', 'Medtr8g105110' => 'mtr', 'MELO3C006470.2' => 'cme', 'MELO3C006471.2' => 'cme', 'MELO3C020772.2' => 'cme', 'MELO3C026780.2' => 'cme', 'MELO3C026781.2' => 'cme', 'Migut.D00390' => 'egut', 'Migut.G00435' => 'egut', 'Migut.G00436' => 'egut', 'Migut.G00718' => 'egut', 'MSTRG.21891' => 'ama', 'MSTRG.26910' => 'ama', 'MSTRG.4099' => 'ama', 'MSTRG.9925' => 'ama', 'Nitab4.5_0000165g0010' => 'nta', 'Nitab4.5_0000209g0180' => 'nta', 'Nitab4.5_0000244g0440' => 'nta', 'Nitab4.5_0000525g0220' => 'nta', 'Nitab4.5_0001597g0020' => 'nta', 'Nitab4.5_0001878g0040' => 'nta', 'Nitab4.5_0001878g0060' => 'nta', 'Nitab4.5_0002838g0100' => 'nta', 'Nitab4.5_0002838g0120' => 'nta', 'Nitab4.5_0004798g0030' => 'nta', 'Nitab4.5_0005420g0010' => 'nta', 'Nitab4.5_0005507g0010' => 'nta', 'Nitab4.5_0005574g0020' => 'nta', 'Nitab4.5_0005838g0010' => 'nta', 'Nitab4.5_0010580g0020' => 'nta', 'Nn1g02599' => 'nnu', 'Nn1g02608' => 'nnu', 'Nn3g17742' => 'nnu', 'Nn3g19534' => 'nnu', 'Nn3g19535' => 'nnu', 'Oeu008790.1' => 'oeu', 'Oeu008792.1' => 'oeu', 'Oeu032590.1' => 'oeu', 'Oeu035349.1' => 'oeu', 'Oeu049791.1' => 'oeu', 'Os01g0774500' => 'osa', 'Os03g0628800' => 'osa', 'Os03g0798600' => 'osa', 'Os05g0508800' => 'osa', 'Peaxi162Scf00036g02018' => 'pax', 'Peaxi162Scf00578g00032' => 'pax', 'Peaxi162Scf00578g00317' => 'pax', 'Peaxi162Scf00785g00114' => 'pax', 'Peaxi162Scf00813g00119' => 'pax', 'Peaxi162Scf00906g00227' => 'pax', 'PGR004G0875' => 'pgr', 'PGR004G2424' => 'pgr', 'PGR031G1239' => 'pgr', 'PGR031G2474' => 'pgr', 'PGR044G0423' => 'pgr', 'PGSC0003DMG400001128' => 'stu', 'PGSC0003DMG400007336' => 'stu', 'PGSC0003DMG400016318' => 'stu', 'PGSC0003DMG400016319' => 'stu', 'PGSC0003DMG400018074' => 'stu', 'Phvul.001G157700' => 'pvu', 'Phvul.002G148550' => 'pvu', 'Phvul.002G320200' => 'pvu', 'Phvul.003G089200' => 'pvu', 'Phvul.007G126000' => 'pvu', 'Phvul.007G126100' => 'pvu', 'Phvul.007G178000' => 'pvu', 'Phvul.007G178200' => 'pvu', 'Potri.002G043000' => 'ptr', 'Potri.002G043200' => 'ptr', 'Potri.003G123750' => 'ptr', 'Potri.005G055401' => 'ptr', 'Potri.005G219700' => 'ptr', 'Potri.005G220000' => 'ptr', 'Potri.008G161901' => 'ptr', 'Potri.008G162000' => 'ptr', 'Potri.008G162400' => 'ptr', 'Potri.010G076900' => 'ptr', 'Pp3c12_9180' => 'ppa', 'Pp3c13_19770' => 'ppa', 'Pp3c14_22950' => 'ppa', 'Pp3c16_12160' => 'ppa', 'Pp3c27_7820' => 'ppa', 'Pp3c2_3490' => 'ppa', 'Pp3c3_23700' => 'ppa', 'Pp3c3_36520' => 'ppa', 'Pp3c4_15250' => 'ppa', 'PRCOL_00007002' => 'pco', 'Prupe.1G030600' => 'ppe', 'Prupe.1G030700' => 'ppe', 'Prupe.6G345200' => 'ppe', 'Prupe.8G230300' => 'ppe', 'Prupe.8G230500' => 'ppe', 'Psat3g059600' => 'psa', 'Psat5g200920' => 'psa', 'Psat6g056440' => 'psa', 'Psat6g057360' => 'psa', 'Psat6g134120' => 'psa', 'Psat6g134160' => 'psa', 'Psat7g008640' => 'psa', 'Psat7g185240' => 'psa', 'PSO017G1330' => 'pso', 'PSO063G6097' => 'pso', 'PSO170G0835' => 'pso', 'PSO170G2499' => 'pso', 'PSO210G5058' => 'pso', 'PSO210G6154' => 'pso', 'PSO585G0031' => 'pso', 'PSO832G0264' => 'pso', 'PSO832G4288' => 'pso', 'QL03p027355' => 'qlo', 'QL03p027430' => 'qlo', 'QL04p081380' => 'qlo', 'QL06p015642' => 'qlo', 'QL06p015650' => 'qlo', 'QL06p015686' => 'qlo', 'QL12p042927' => 'qlo', 'QL93p1863_0035' => 'qlo', 'RcHm_v2.0_Chr3g0450581' => 'rch', 'RcHm_v2.0_Chr4g0390371' => 'rch', 'RcHm_v2.0_Chr4g0390381' => 'rch', 'RcHm_v2.0_Chr4g0390491' => 'rch', 'RcHm_v2.0_Chr4g0390501' => 'rch', 'RcHm_v2.0_Chr6g0289231' => 'rch', 'Rhsim04G0190400' => 'rsi', 'Rhsim04G0190500' => 'rsi', 'Rhsim04G0190600' => 'rsi', 'Rhsim13G0031400' => 'rsi', 'Rhsim13G0165600' => 'rsi', 'RhsimUnG0114600' => 'rsi', 'RhsimUnG0114700' => 'rsi', 'Sabra02G0034800' => 'sbr', 'Sabra02G0035100' => 'sbr', 'Sabra05G0168600' => 'sbr', 'Sabra05G0168800' => 'sbr', 'Sabra08G0123700' => 'sbr', 'Sabra10G0031900' => 'sbr', 'Sabra13G0039000' => 'sbr', 'SalBow2G0782' => 'sbo', 'SalBow2G1403' => 'sbo', 'SalBow4G0074' => 'sbo', 'SalBow4G2635' => 'sbo', 'SalBow5G3010' => 'sbo', 'Sc05g0000870' => 'sci', 'Sc05g0000890' => 'sci', 'Sc13g0005000' => 'sci', 'Sc13g0005030' => 'sci', 'Sc19g0003790' => 'sci', 'Sc19g0003800' => 'sci', 'Sed0003467' => 'sed', 'Sed0009355' => 'sed', 'Sed0009894' => 'sed', 'Sed0011972' => 'sed', 'Sed0021483' => 'sed', 'Sed0021750' => 'sed', 'Sed0026279' => 'sed', 'SEGI_05312' => 'sgi', 'SEGI_10112' => 'sgi', 'SEGI_15835' => 'sgi', 'SEGI_30386' => 'sgi', 'SEGI_34122' => 'sgi', 'SEGI_35063' => 'sgi', 'SGA_v2.0_scaffold101G29794' => 'sas', 'SGA_v2.0_scaffold1G00573' => 'sas', 'SGA_v2.0_scaffold79G25637' => 'sas', 'SGA_v2.0_scaffold88G27283' => 'sas', 'SGA_v2.0_scaffold88G27285' => 'sas', 'SGA_v2.0_scaffold88G27331' => 'sas', 'SHI09937' => 'shi', 'SMO119G0302' => 'smo', 'SMO137G0231' => 'smo', 'SMO367G1151' => 'smo', 'Solyc02g082000.3' => 'sly', 'Solyc06g031670.3' => 'sly', 'Solyc06g053810.3' => 'sly', 'Solyc07g025457.1' => 'sly', 'Solyc08g059740.1' => 'sly', 'Solyc08g059750.3' => 'sly', 'Solyc09g083370.3' => 'sly', 'Solyc12g038950.3' => 'sly', 'Sopen02g026630' => 'spe', 'Sopen06g018930' => 'spe', 'Sopen06g018940' => 'spe', 'Sopen08g009460' => 'spe', 'Sopen09g032290' => 'spe', 'Sp1g03080' => 'spa', 'Sp1g03090' => 'spa', 'Sp1g05480' => 'spa', 'Sp2g07860' => 'spa', 'Sp2g08430' => 'spa', 'Sp2g08440' => 'spa', 'Sp2g26200' => 'spa', 'Sp4g13170' => 'spa', 'Sp6g33840' => 'spa', 'SpUn1204_0010' => 'spa', 'TAR365G0908' => 'tar', 'TAR381G1270' => 'tar', 'TAR381G1651' => 'tar', 'TAR625G1131' => 'tar', 'TAR633G0962' => 'tar', 'TAR633G1729' => 'tar', 'TAR633G1864' => 'tar', 'TAR636G0221' => 'tar', 'TAR636G0314' => 'tar', 'TAR636G3202' => 'tar', 'THA.LOC104800805' => 'tha', 'THA.LOC104801096' => 'tha', 'THA.LOC104801555' => 'tha', 'THA.LOC104808491' => 'tha', 'THA.LOC104808595' => 'tha', 'THA.LOC104815985' => 'tha', 'THA.LOC104822250' => 'tha', 'THA.LOC104826071' => 'tha', 'Thecc.01G265200' => 'tca', 'Thecc.01G265300' => 'tca', 'Thecc.01G265700' => 'tca', 'Thecc.03G109100' => 'tca', 'Thecc.04G245900' => 'tca', 'Thecc.04G246000' => 'tca', 'Thhalv10003334m.g' => 'esa', 'Thhalv10005508m.g' => 'esa', 'Thhalv10005643m.g' => 'esa', 'Thhalv10007316m.g' => 'esa', 'Thhalv10009006m.g' => 'esa', 'Thhalv10009309m.g' => 'esa', 'Thhalv10014917m.g' => 'esa', 'Thhalv10014919m.g' => 'esa', 'Thhalv10015393m.g' => 'esa', 'Thhalv10016515m.g' => 'esa', 'Thhalv10029242m.g' => 'esa', 'TPR.G16654' => 'tpr', 'TPR.G20589' => 'tpr', 'TPR.G23029' => 'tpr', 'TPR.G27731' => 'tpr', 'TPR.G28889' => 'tpr', 'TPR.G28899' => 'tpr', 'TPR.G30846' => 'tpr', 'TPR.G5452' => 'tpr', 'TPR.G5713' => 'tpr', 'TPR.G9046' => 'tpr', 'TPR.G9061' => 'tpr', 'TWI09G1075' => 'twi', 'TWI12G0806' => 'twi', 'TWI18G0108' => 'twi', 'TWI53G1361' => 'twi', 'TWI73G0185' => 'twi', 'TWI73G0427' => 'twi', 'unitig_37.g12001' => 'ugi', 'unitig_747.g21660' => 'ugi', 'unitig_748.g7232' => 'ugi', 'unitig_748.g7315' => 'ugi', 'unitig_85.g27262' => 'ugi', 'unitig_92.g28220' => 'ugi', 'vmacro02632' => 'vma', 'vmacro08410' => 'vma', 'vmacro08411' => 'vma', 'vmacro15407' => 'vma', 'VMungo0251G3619' => 'vmu', 'VMungo0720G1204' => 'vmu', 'VMungo0720G1918' => 'vmu', 'VMungo0720G2387' => 'vmu', 'VMungo0720G2961' => 'vmu', 'VMungo1215G2154' => 'vmu', 'VMungo1383G2411' => 'vmu', 'Zm00001eb051130' => 'zma', 'Zm00001eb116830' => 'zma', 'Zm00001eb116850' => 'zma', 'Zm00001eb151740' => 'zma', 'Zm00001eb292360' => 'zma', 'Zm00001eb301640' => 'zma' ) $gf_id = 'HOM05D000856' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000856' ) $data_identifier = 'HOM05D000856' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 13, 'ath' => (int) 10, 'atr' => (int) 1, 'acertr' => (int) 8, 'cqu' => (int) 6, 'bca' => (int) 21, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 11, 'car' => (int) 9, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 8, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 5, 'fan' => (int) 16, 'fve' => (int) 6, 'gma' => (int) 11, 'ghi' => (int) 19, 'gra' => (int) 9, 'vvi' => (int) 7, 'han' => (int) 17, 'cav' => (int) 5, 'hma' => (int) 2, 'vpl' => (int) 2, 'sun' => (int) 7, 'lal' => (int) 9, 'lja' => (int) 5, 'lonja' => (int) 9, 'lsa' => (int) 5, 'mes' => (int) 8, 'mpo' => (int) 3, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 10, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 15, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 9, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 9, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 6, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 5, 'spa' => (int) 10, 'tar' => (int) 10, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 11, 'tpr' => (int) 11, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 4, 'vmu' => (int) 7, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb301640' $species_info = array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ) $local_species = 'mbi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000856', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p00010' => 'bna', 'A03p04160' => 'bna', 'A03p17160' => 'bna', 'A04p23370' => 'bna', 'A05p14860' => 'bna', 'A08p37020' => 'bna', 'A09p08050' => 'bna', 'A09p66800' => 'bna', 'A09p67940' => 'bna', 'A10p02680' => 'bna', 'A10p05320' => 'bna', 'Aa31LG1G20560' => 'aar', 'Aa31LG1G20610' => 'aar', 'Aa31LG1G7810' => 'aar', 'Aa31LG5G3590' => 'aar', 'Aa31LG5G6140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3819' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4683' => 'aag', 'Actinidia04480' => 'ach', 'Actinidia05466' => 'ach', 'Actinidia08445' => 'ach', 'Actinidia21170' => 'ach', 'Actinidia24812' => 'ach', 'Actinidia24951' => 'ach', 'Actinidia40088' => 'ach', 'Ah.02g111660' => 'amhyb', 'Ah.11g048900' => 'amhyb', 'Ah.11g049910' => 'amhyb', 'AL1G13870' => 'aly', 'AL1G13880' => 'aly', 'AL1G16760' => 'aly', 'AL390U10020' => 'aly', 'AL4G25520' => 'aly', 'AL6G19890' => 'aly', 'AL6G19900' => 'aly', 'AL6G19910' => 'aly', 'AL8G40100' => 'aly', 'Aqoxy2G03562' => 'aox', 'Aqoxy5G00316' => 'aox', 'Aqoxy5G00926' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1628KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1H403S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2FU6SJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.882I6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8YRY2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YN1SN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AF70II' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZA8L1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F916KL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHRD8H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KTZ8QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S22EMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8M29T' => 'arhy', 'AT1G04270' => 'ath', 'AT1G04280' => 'ath', 'AT1G06750' => 'ath', 'AT1G33850' => 'ath', 'AT2G30630' => 'ath', 'AT5G09490' => 'ath', 'AT5G09500' => 'ath', 'AT5G09510' => 'ath', 'AT5G43640' => 'ath', 'AT5G63070' => 'ath', 'ATR0605G315' => 'atr', 'Atru.chr11.175' => 'acertr', 'Atru.chr11.653' => 'acertr', 'Atru.chr3.1616' => 'acertr', 'Atru.chr4.2230' => 'acertr', 'Atru.chr4.2232' => 'acertr', 'Atru.chr5.1598' => 'acertr', 'Atru.chr5.1600' => 'acertr', 'Atru.chr5.2188' => 'acertr', 'AUR62008326' => 'cqu', 'AUR62011922' => 'cqu', 'AUR62011924' => 'cqu', 'AUR62021771' => 'cqu', 'AUR62032237' => 'cqu', 'AUR62032240' => 'cqu', 'BcaB01g05572' => 'bca', 'BcaB02g10337' => 'bca', 'BcaB04g19944' => 'bca', 'BcaB05g21548' => 'bca', 'BcaB05g21549' => 'bca', 'BcaB05g23227' => 'bca', 'BcaB06g26256' => 'bca', 'BcaB06g26257' => 'bca', 'BcaB06g28379' => 'bca', 'BcaC02g11159' => 'bca', 'BcaC03g13258' => 'bca', 'BcaC03g13259' => 'bca', 'BcaC05g24456' => 'bca', 'BcaC05g24457' => 'bca', 'BcaC07g36922' => 'bca', 'BcaC07g36923' => 'bca', 'BcaC07g42050' => 'bca', 'BcaC07g42176' => 'bca', 'BcaC07g42195' => 'bca', 'BcaC07g42196' => 'bca', 'BcaNung06674' => 'bca', 'BolC2t06351H' => 'bol', 'BolC2t06352H' => 'bol', 'BolC3t12993H' => 'bol', 'BolC4t23525H' => 'bol', 'BolC4t27475H' => 'bol', 'BolC5t29025H' => 'bol', 'BolC5t29026H' => 'bol', 'BolC8t46898H' => 'bol', 'BolC8t46899H' => 'bol', 'BolC8t52630H' => 'bol', 'BolC8t52765H' => 'bol', 'BolC9t53824H' => 'bol', 'BraA03t09760Z' => 'bra', 'BraA03t10990Z' => 'bra', 'BraA05t20413Z' => 'bra', 'BraA08t35602Z' => 'bra', 'BraA09t36458Z' => 'bra', 'BraA09t42018Z' => 'bra', 'BraA09t42129Z' => 'bra', 'BraA10t42536Z' => 'bra', 'BraA10t42537Z' => 'bra', 'C01p10690' => 'bna', 'C02p03890' => 'bna', 'C02p03900' => 'bna', 'C03p04620' => 'bna', 'C04p19870' => 'bna', 'C04p59670' => 'bna', 'C05p02460' => 'bna', 'C05p02470' => 'bna', 'C08p00980' => 'bna', 'C08p00990' => 'bna', 'C08p51030' => 'bna', 'C08p52360' => 'bna', 'C09p09120' => 'bna', 'CAN.G19.15' => 'can', 'CAN.G251.10' => 'can', 'CAN.G251.9' => 'can', 'CAN.G398.24' => 'can', 'CAN.G410.32' => 'can', 'CAN.G881.2' => 'can', 'CANSAT01G3025' => 'cansat', 'CANSAT78G1211' => 'cansat', 'CANSAT78G1218' => 'cansat', 'CANSAT78G1521' => 'cansat', 'CANSAT78G1670' => 'cansat', 'CARHR003600' => 'chi', 'CARHR003610' => 'chi', 'CARHR006290' => 'chi', 'CARHR006430' => 'chi', 'CARHR124110' => 'chi', 'CARHR203870' => 'chi', 'CARHR203880' => 'chi', 'CARHR203890' => 'chi', 'CARHR276880' => 'chi', 'Carub.0001s0346' => 'cru', 'Carub.0001s0347' => 'cru', 'Carub.0001s0607' => 'cru', 'Carub.0003s2768' => 'cru', 'Carub.0003s2769' => 'cru', 'Carub.0004s1178' => 'cru', 'Carub.0006s0806' => 'cru', 'Carub.0006s0807' => 'cru', 'Carub.0006s0808' => 'cru', 'Carub.0008s0501' => 'cru', 'Carub.0008s2379' => 'cru', 'Ca_08655_v3' => 'car', 'Ca_08922_v3' => 'car', 'Ca_08923_v3' => 'car', 'Ca_09119_v3' => 'car', 'Ca_09703_v3' => 'car', 'Ca_09705_v3' => 'car', 'Ca_09835_v3' => 'car', 'Ca_26403_v3' => 'car', 'Ca_30719_v3' => 'car', 'CBR_g17958' => 'cbr', 'CBR_g40516' => 'cbr', 'Cc00_g05350' => 'ccan', 'Cc01_g18690' => 'ccan', 'Cc03_g04830' => 'ccan', 'Cc03_g04850' => 'ccan', 'CDE02G4469' => 'cde', 'CDE06G0883' => 'cde', 'CDE06G1295' => 'cde', 'CDE06G1390' => 'cde', 'CDE07G0584' => 'cde', 'CDE07G1084' => 'cde', 'CDE08G1259' => 'cde', 'Cfa002341' => 'cfa', 'Cfa024337' => 'cfa', 'Ciclev10004749m.g' => 'ccl', 'Ciclev10006127m.g' => 'ccl', 'Ciclev10019720m.g' => 'ccl', 'Ciclev10022652m.g' => 'ccl', 'CiPaw.01G190400' => 'cil', 'CiPaw.01G190500' => 'cil', 'CiPaw.02G116400' => 'cil', 'CiPaw.02G116500' => 'cil', 'CiPaw.04G183000' => 'cil', 'CiPaw.04G183300' => 'cil', 'ClCG05G004610' => 'cla', 'ClCG05G004620' => 'cla', 'ClCG06G006730' => 'cla', 'ClCG06G006740' => 'cla', 'ClCG11G003690' => 'cla', 'COL.COLO4_08276' => 'col', 'COL.COLO4_08277' => 'col', 'COL.COLO4_15787' => 'col', 'COL.COLO4_15789' => 'col', 'Cpa.g.c44815' => 'cpa', 'Cpa.g.sc52.144' => 'cpa', 'Cpa.g.sc58.46' => 'cpa', 'Cpa.g.sc58.47' => 'cpa', 'Cre08.g360900' => 'cre', 'CsaV3_2G013030' => 'csa', 'CsaV3_2G013050' => 'csa', 'CsaV3_2G015620' => 'csa', 'CsaV3_3G012590' => 'csa', 'CsaV3_3G012600' => 'csa', 'CSS0001641' => 'camsi', 'CSS0008310' => 'camsi', 'CSS0013011' => 'camsi', 'CSS0017147' => 'camsi', 'CSS0022970' => 'camsi', 'CSS0025655' => 'camsi', 'CSS0028665' => 'camsi', 'CSS0029117' => 'camsi', 'CSS0032024' => 'camsi', 'CSS0039681' => 'camsi', 'CSS0046516' => 'camsi', 'CSS0050307' => 'camsi', 'DCAR_005871' => 'dca', 'DCAR_007342' => 'dca', 'DCAR_024228' => 'dca', 'DCAR_027277' => 'dca', 'DCAR_030718' => 'dca', 'Dinv20287' => 'din', 'Dinv22461' => 'din', 'Dinv22464' => 'din', 'Dinv29912' => 'din', 'Dinv29913' => 'din', 'Dinv34580' => 'din', 'Dinv34582' => 'din', 'Dinv44632' => 'din', 'Duzib052G0266' => 'dzi', 'Duzib133G0907' => 'dzi', 'Duzib133G1034' => 'dzi', 'Duzib138G0207' => 'dzi', 'Duzib138G0491' => 'dzi', 'Duzib151G0812' => 'dzi', 'Duzib151G1166' => 'dzi', 'Duzib168G0192' => 'dzi', 'Duzib211G0077' => 'dzi', 'Duzib212G0429' => 'dzi', 'Duzib212G0472' => 'dzi', 'ECA233G2617' => 'eca', 'ECA236G4188' => 'eca', 'ECA240G0936' => 'eca', 'ECA240G1129' => 'eca', 'ECA247G0623' => 'eca', 'EL10Ac5g10451' => 'bvu', 'EL10Ac5g10453' => 'bvu', 'EL10Ac5g10894' => 'bvu', 'Eucgr.H00192' => 'egr', 'Eucgr.H00193' => 'egr', 'Eucgr.H00194' => 'egr', 'Eucgr.J01562' => 'egr', 'Eucgr.K03301' => 'egr', 'FAN02G0632' => 'fan', 'FAN05G5378' => 'fan', 'FAN09G3247' => 'fan', 'FAN12G0435' => 'fan', 'FAN12G2426' => 'fan', 'FAN14G1707' => 'fan', 'FAN14G4725' => 'fan', 'FAN15G2071' => 'fan', 'FAN17G3065' => 'fan', 'FAN19G1376' => 'fan', 'FAN20G0354' => 'fan', 'FAN20G2429' => 'fan', 'FAN20G2658' => 'fan', 'FAN24G2343' => 'fan', 'FAN27G2362' => 'fan', 'FAN28G1765' => 'fan', 'FvH4_1g16020' => 'fve', 'FvH4_2g04890' => 'fve', 'FvH4_2g22270' => 'fve', 'FvH4_4g02630' => 'fve', 'FvH4_4g02640' => 'fve', 'FvH4_6g02650' => 'fve', 'Glyma.02G140600' => 'gma', 'Glyma.03G159900' => 'gma', 'Glyma.05G234800' => 'gma', 'Glyma.07G269600' => 'gma', 'Glyma.08G042300' => 'gma', 'Glyma.10G033500' => 'gma', 'Glyma.10G185200' => 'gma', 'Glyma.17G004300' => 'gma', 'Glyma.19G161900' => 'gma', 'Glyma.20G205100' => 'gma', 'Glyma.20G205200' => 'gma', 'Gohir.A01G139101' => 'ghi', 'Gohir.A02G035600' => 'ghi', 'Gohir.A02G117901' => 'ghi', 'Gohir.A07G210100' => 'ghi', 'Gohir.A07G210200' => 'ghi', 'Gohir.A08G061100' => 'ghi', 'Gohir.A09G223000' => 'ghi', 'Gohir.A09G223100' => 'ghi', 'Gohir.A10G113900' => 'ghi', 'Gohir.A10G114000' => 'ghi', 'Gohir.D02G042300' => 'ghi', 'Gohir.D07G216100' => 'ghi', 'Gohir.D07G216200' => 'ghi', 'Gohir.D08G070400' => 'ghi', 'Gohir.D09G225000' => 'ghi', 'Gohir.D09G225100' => 'ghi', 'Gohir.D10G152300' => 'ghi', 'Gohir.D10G153200' => 'ghi', 'Gohir.D11G133701' => 'ghi', 'Gorai.004G074100' => 'gra', 'Gorai.005G046800' => 'gra', 'Gorai.006G246500' => 'gra', 'Gorai.006G246600' => 'gra', 'Gorai.007G142900' => 'gra', 'Gorai.011G171000' => 'gra', 'Gorai.011G171100' => 'gra', 'Gorai.013G104300' => 'gra', 'Gorai.013G104400' => 'gra', 'GSVIVG01000754001' => 'vvi', 'GSVIVG01000756001' => 'vvi', 'GSVIVG01010903001' => 'vvi', 'GSVIVG01017623001' => 'vvi', 'GSVIVG01018113001' => 'vvi', 'GSVIVG01018116001' => 'vvi', 'GSVIVG01018118001' => 'vvi', 'HanXRQChr03g0076211' => 'han', 'HanXRQChr03g0092431' => 'han', 'HanXRQChr03g0092441' => 'han', 'HanXRQChr03g0092591' => 'han', 'HanXRQChr03g0092671' => 'han', 'HanXRQChr03g0092681' => 'han', 'HanXRQChr03g0092691' => 'han', 'HanXRQChr03g0092701' => 'han', 'HanXRQChr03g0092721' => 'han', 'HanXRQChr03g0092731' => 'han', 'HanXRQChr04g0113681' => 'han', 'HanXRQChr10g0281371' => 'han', 'HanXRQChr11g0337141' => 'han', 'HanXRQChr13g0424521' => 'han', 'HanXRQChr13g0424531' => 'han', 'HanXRQChr13g0424541' => 'han', 'HanXRQChr16g0498221' => 'han', 'Haze_04377' => 'cav', 'Haze_11298' => 'cav', 'Haze_24547' => 'cav', 'Haze_24550' => 'cav', 'Haze_26587' => 'cav', 'Hma1.2p1_0650F.1_g195410' => 'hma', 'Hma1.2p1_0893F.1_g233470' => 'hma', 'HPP92_006508' => 'vpl', 'HPP92_024780' => 'vpl', 'Hund02688' => 'sun', 'Hund09380' => 'sun', 'Hund09381' => 'sun', 'Hund09832' => 'sun', 'Hund09833' => 'sun', 'Hund11351' => 'sun', 'Hund11513' => 'sun', 'Lalb_Chr06g0162591' => 'lal', 'Lalb_Chr06g0162601' => 'lal', 'Lalb_Chr06g0169321' => 'lal', 'Lalb_Chr09g0330951' => 'lal', 'Lalb_Chr16g0387631' => 'lal', 'Lalb_Chr21g0306241' => 'lal', 'Lalb_Chr25g0290051' => 'lal', 'Lalb_Chr25g0290061' => 'lal', 'Lalb_Chr25g0290071' => 'lal', 'Lj1g0003876' => 'lja', 'Lj1P1207T36' => 'lonja', 'Lj2C1156G12' => 'lonja', 'Lj3A793G39' => 'lonja', 'Lj3C580G2' => 'lonja', 'Lj3C780G2' => 'lonja', 'Lj3C780T4' => 'lonja', 'Lj3C793G9' => 'lonja', 'Lj4g0012960' => 'lja', 'Lj5g0021252' => 'lja', 'Lj5g0021484' => 'lja', 'Lj5g0024528' => 'lja', 'Lj6A399T12' => 'lonja', 'Lj6A656G65' => 'lonja', 'Lsat_1_v5_gn_3_125500' => 'lsa', 'Lsat_1_v5_gn_3_125540' => 'lsa', 'Lsat_1_v5_gn_5_72701' => 'lsa', 'Lsat_1_v5_gn_8_91560' => 'lsa', 'Lsat_1_v5_gn_9_9640' => 'lsa', 'Manes.01G200600' => 'mes', 'Manes.01G200700' => 'mes', 'Manes.03G168900' => 'mes', 'Manes.03G169000' => 'mes', 'Manes.05G085801' => 'mes', 'Manes.05G086200' => 'mes', 'Manes.15G036700' => 'mes', 'Manes.15G036900' => 'mes', 'Mapoly0004s0172' => 'mpo', 'Mapoly0023s0001' => 'mpo', 'Mapoly0142s0012' => 'mpo', 'MBI01_g32854_MAGBIO' => 'mbi', 'MBI11_g24427_MAGBIO' => 'mbi', 'MBI11_g47319_MAGBIO' => 'mbi', 'MCO01G433' => 'mco', 'MD00G1187800' => 'mdo', 'MD04G1226500' => 'mdo', 'MD05G1203900' => 'mdo', 'MD10G1191100' => 'mdo', 'MD12G1243500' => 'mdo', 'MD13G1207000' => 'mdo', 'MD13G1207100' => 'mdo', 'MD16G1208600' => 'mdo', 'Medtr1g050352' => 'mtr', 'Medtr1g070385' => 'mtr', 'Medtr1g070450' => 'mtr', 'Medtr1g075200' => 'mtr', 'Medtr1g075250' => 'mtr', 'Medtr1g075260' => 'mtr', 'Medtr1g475250' => 'mtr', 'Medtr4g075450' => 'mtr', 'Medtr7g096300' => 'mtr', 'Medtr8g105110' => 'mtr', 'MELO3C006470.2' => 'cme', 'MELO3C006471.2' => 'cme', 'MELO3C020772.2' => 'cme', 'MELO3C026780.2' => 'cme', 'MELO3C026781.2' => 'cme', 'Migut.D00390' => 'egut', 'Migut.G00435' => 'egut', 'Migut.G00436' => 'egut', 'Migut.G00718' => 'egut', 'MSTRG.21891' => 'ama', 'MSTRG.26910' => 'ama', 'MSTRG.4099' => 'ama', 'MSTRG.9925' => 'ama', 'Nitab4.5_0000165g0010' => 'nta', 'Nitab4.5_0000209g0180' => 'nta', 'Nitab4.5_0000244g0440' => 'nta', 'Nitab4.5_0000525g0220' => 'nta', 'Nitab4.5_0001597g0020' => 'nta', 'Nitab4.5_0001878g0040' => 'nta', 'Nitab4.5_0001878g0060' => 'nta', 'Nitab4.5_0002838g0100' => 'nta', 'Nitab4.5_0002838g0120' => 'nta', 'Nitab4.5_0004798g0030' => 'nta', 'Nitab4.5_0005420g0010' => 'nta', 'Nitab4.5_0005507g0010' => 'nta', 'Nitab4.5_0005574g0020' => 'nta', 'Nitab4.5_0005838g0010' => 'nta', 'Nitab4.5_0010580g0020' => 'nta', 'Nn1g02599' => 'nnu', 'Nn1g02608' => 'nnu', 'Nn3g17742' => 'nnu', 'Nn3g19534' => 'nnu', 'Nn3g19535' => 'nnu', 'Oeu008790.1' => 'oeu', 'Oeu008792.1' => 'oeu', 'Oeu032590.1' => 'oeu', 'Oeu035349.1' => 'oeu', 'Oeu049791.1' => 'oeu', 'Os01g0774500' => 'osa', 'Os03g0628800' => 'osa', 'Os03g0798600' => 'osa', 'Os05g0508800' => 'osa', 'Peaxi162Scf00036g02018' => 'pax', 'Peaxi162Scf00578g00032' => 'pax', 'Peaxi162Scf00578g00317' => 'pax', 'Peaxi162Scf00785g00114' => 'pax', 'Peaxi162Scf00813g00119' => 'pax', 'Peaxi162Scf00906g00227' => 'pax', 'PGR004G0875' => 'pgr', 'PGR004G2424' => 'pgr', 'PGR031G1239' => 'pgr', 'PGR031G2474' => 'pgr', 'PGR044G0423' => 'pgr', 'PGSC0003DMG400001128' => 'stu', 'PGSC0003DMG400007336' => 'stu', 'PGSC0003DMG400016318' => 'stu', 'PGSC0003DMG400016319' => 'stu', 'PGSC0003DMG400018074' => 'stu', 'Phvul.001G157700' => 'pvu', 'Phvul.002G148550' => 'pvu', 'Phvul.002G320200' => 'pvu', 'Phvul.003G089200' => 'pvu', 'Phvul.007G126000' => 'pvu', 'Phvul.007G126100' => 'pvu', 'Phvul.007G178000' => 'pvu', 'Phvul.007G178200' => 'pvu', 'Potri.002G043000' => 'ptr', 'Potri.002G043200' => 'ptr', 'Potri.003G123750' => 'ptr', 'Potri.005G055401' => 'ptr', 'Potri.005G219700' => 'ptr', 'Potri.005G220000' => 'ptr', 'Potri.008G161901' => 'ptr', 'Potri.008G162000' => 'ptr', 'Potri.008G162400' => 'ptr', 'Potri.010G076900' => 'ptr', 'Pp3c12_9180' => 'ppa', 'Pp3c13_19770' => 'ppa', 'Pp3c14_22950' => 'ppa', 'Pp3c16_12160' => 'ppa', 'Pp3c27_7820' => 'ppa', 'Pp3c2_3490' => 'ppa', 'Pp3c3_23700' => 'ppa', 'Pp3c3_36520' => 'ppa', 'Pp3c4_15250' => 'ppa', 'PRCOL_00007002' => 'pco', 'Prupe.1G030600' => 'ppe', 'Prupe.1G030700' => 'ppe', 'Prupe.6G345200' => 'ppe', 'Prupe.8G230300' => 'ppe', 'Prupe.8G230500' => 'ppe', 'Psat3g059600' => 'psa', 'Psat5g200920' => 'psa', 'Psat6g056440' => 'psa', 'Psat6g057360' => 'psa', 'Psat6g134120' => 'psa', 'Psat6g134160' => 'psa', 'Psat7g008640' => 'psa', 'Psat7g185240' => 'psa', 'PSO017G1330' => 'pso', 'PSO063G6097' => 'pso', 'PSO170G0835' => 'pso', 'PSO170G2499' => 'pso', 'PSO210G5058' => 'pso', 'PSO210G6154' => 'pso', 'PSO585G0031' => 'pso', 'PSO832G0264' => 'pso', 'PSO832G4288' => 'pso', 'QL03p027355' => 'qlo', 'QL03p027430' => 'qlo', 'QL04p081380' => 'qlo', 'QL06p015642' => 'qlo', 'QL06p015650' => 'qlo', 'QL06p015686' => 'qlo', 'QL12p042927' => 'qlo', 'QL93p1863_0035' => 'qlo', 'RcHm_v2.0_Chr3g0450581' => 'rch', 'RcHm_v2.0_Chr4g0390371' => 'rch', 'RcHm_v2.0_Chr4g0390381' => 'rch', 'RcHm_v2.0_Chr4g0390491' => 'rch', 'RcHm_v2.0_Chr4g0390501' => 'rch', 'RcHm_v2.0_Chr6g0289231' => 'rch', 'Rhsim04G0190400' => 'rsi', 'Rhsim04G0190500' => 'rsi', 'Rhsim04G0190600' => 'rsi', 'Rhsim13G0031400' => 'rsi', 'Rhsim13G0165600' => 'rsi', 'RhsimUnG0114600' => 'rsi', 'RhsimUnG0114700' => 'rsi', 'Sabra02G0034800' => 'sbr', 'Sabra02G0035100' => 'sbr', 'Sabra05G0168600' => 'sbr', 'Sabra05G0168800' => 'sbr', 'Sabra08G0123700' => 'sbr', 'Sabra10G0031900' => 'sbr', 'Sabra13G0039000' => 'sbr', 'SalBow2G0782' => 'sbo', 'SalBow2G1403' => 'sbo', 'SalBow4G0074' => 'sbo', 'SalBow4G2635' => 'sbo', 'SalBow5G3010' => 'sbo', 'Sc05g0000870' => 'sci', 'Sc05g0000890' => 'sci', 'Sc13g0005000' => 'sci', 'Sc13g0005030' => 'sci', 'Sc19g0003790' => 'sci', 'Sc19g0003800' => 'sci', 'Sed0003467' => 'sed', 'Sed0009355' => 'sed', 'Sed0009894' => 'sed', 'Sed0011972' => 'sed', 'Sed0021483' => 'sed', 'Sed0021750' => 'sed', 'Sed0026279' => 'sed', 'SEGI_05312' => 'sgi', 'SEGI_10112' => 'sgi', 'SEGI_15835' => 'sgi', 'SEGI_30386' => 'sgi', 'SEGI_34122' => 'sgi', 'SEGI_35063' => 'sgi', 'SGA_v2.0_scaffold101G29794' => 'sas', 'SGA_v2.0_scaffold1G00573' => 'sas', 'SGA_v2.0_scaffold79G25637' => 'sas', 'SGA_v2.0_scaffold88G27283' => 'sas', 'SGA_v2.0_scaffold88G27285' => 'sas', 'SGA_v2.0_scaffold88G27331' => 'sas', 'SHI09937' => 'shi', 'SMO119G0302' => 'smo', 'SMO137G0231' => 'smo', 'SMO367G1151' => 'smo', 'Solyc02g082000.3' => 'sly', 'Solyc06g031670.3' => 'sly', 'Solyc06g053810.3' => 'sly', 'Solyc07g025457.1' => 'sly', 'Solyc08g059740.1' => 'sly', 'Solyc08g059750.3' => 'sly', 'Solyc09g083370.3' => 'sly', 'Solyc12g038950.3' => 'sly', 'Sopen02g026630' => 'spe', 'Sopen06g018930' => 'spe', 'Sopen06g018940' => 'spe', 'Sopen08g009460' => 'spe', 'Sopen09g032290' => 'spe', 'Sp1g03080' => 'spa', 'Sp1g03090' => 'spa', 'Sp1g05480' => 'spa', 'Sp2g07860' => 'spa', 'Sp2g08430' => 'spa', 'Sp2g08440' => 'spa', 'Sp2g26200' => 'spa', 'Sp4g13170' => 'spa', 'Sp6g33840' => 'spa', 'SpUn1204_0010' => 'spa', 'TAR365G0908' => 'tar', 'TAR381G1270' => 'tar', 'TAR381G1651' => 'tar', 'TAR625G1131' => 'tar', 'TAR633G0962' => 'tar', 'TAR633G1729' => 'tar', 'TAR633G1864' => 'tar', 'TAR636G0221' => 'tar', 'TAR636G0314' => 'tar', 'TAR636G3202' => 'tar', 'THA.LOC104800805' => 'tha', 'THA.LOC104801096' => 'tha', 'THA.LOC104801555' => 'tha', 'THA.LOC104808491' => 'tha', 'THA.LOC104808595' => 'tha', 'THA.LOC104815985' => 'tha', 'THA.LOC104822250' => 'tha', 'THA.LOC104826071' => 'tha', 'Thecc.01G265200' => 'tca', 'Thecc.01G265300' => 'tca', 'Thecc.01G265700' => 'tca', 'Thecc.03G109100' => 'tca', 'Thecc.04G245900' => 'tca', 'Thecc.04G246000' => 'tca', 'Thhalv10003334m.g' => 'esa', 'Thhalv10005508m.g' => 'esa', 'Thhalv10005643m.g' => 'esa', 'Thhalv10007316m.g' => 'esa', 'Thhalv10009006m.g' => 'esa', 'Thhalv10009309m.g' => 'esa', 'Thhalv10014917m.g' => 'esa', 'Thhalv10014919m.g' => 'esa', 'Thhalv10015393m.g' => 'esa', 'Thhalv10016515m.g' => 'esa', 'Thhalv10029242m.g' => 'esa', 'TPR.G16654' => 'tpr', 'TPR.G20589' => 'tpr', 'TPR.G23029' => 'tpr', 'TPR.G27731' => 'tpr', 'TPR.G28889' => 'tpr', 'TPR.G28899' => 'tpr', 'TPR.G30846' => 'tpr', 'TPR.G5452' => 'tpr', 'TPR.G5713' => 'tpr', 'TPR.G9046' => 'tpr', 'TPR.G9061' => 'tpr', 'TWI09G1075' => 'twi', 'TWI12G0806' => 'twi', 'TWI18G0108' => 'twi', 'TWI53G1361' => 'twi', 'TWI73G0185' => 'twi', 'TWI73G0427' => 'twi', 'unitig_37.g12001' => 'ugi', 'unitig_747.g21660' => 'ugi', 'unitig_748.g7232' => 'ugi', 'unitig_748.g7315' => 'ugi', 'unitig_85.g27262' => 'ugi', 'unitig_92.g28220' => 'ugi', 'vmacro02632' => 'vma', 'vmacro08410' => 'vma', 'vmacro08411' => 'vma', 'vmacro15407' => 'vma', 'VMungo0251G3619' => 'vmu', 'VMungo0720G1204' => 'vmu', 'VMungo0720G1918' => 'vmu', 'VMungo0720G2387' => 'vmu', 'VMungo0720G2961' => 'vmu', 'VMungo1215G2154' => 'vmu', 'VMungo1383G2411' => 'vmu', 'Zm00001eb051130' => 'zma', 'Zm00001eb116830' => 'zma', 'Zm00001eb116850' => 'zma', 'Zm00001eb151740' => 'zma', 'Zm00001eb292360' => 'zma', 'Zm00001eb301640' => 'zma' ), 'gf_id' => 'HOM05D000856', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000856' ), 'data_identifier' => 'HOM05D000856', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000856', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p00010' => 'bna', 'A03p04160' => 'bna', 'A03p17160' => 'bna', 'A04p23370' => 'bna', 'A05p14860' => 'bna', 'A08p37020' => 'bna', 'A09p08050' => 'bna', 'A09p66800' => 'bna', 'A09p67940' => 'bna', 'A10p02680' => 'bna', 'A10p05320' => 'bna', 'Aa31LG1G20560' => 'aar', 'Aa31LG1G20610' => 'aar', 'Aa31LG1G7810' => 'aar', 'Aa31LG5G3590' => 'aar', 'Aa31LG5G6140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3819' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4683' => 'aag', 'Actinidia04480' => 'ach', 'Actinidia05466' => 'ach', 'Actinidia08445' => 'ach', 'Actinidia21170' => 'ach', 'Actinidia24812' => 'ach', 'Actinidia24951' => 'ach', 'Actinidia40088' => 'ach', 'Ah.02g111660' => 'amhyb', 'Ah.11g048900' => 'amhyb', 'Ah.11g049910' => 'amhyb', 'AL1G13870' => 'aly', 'AL1G13880' => 'aly', 'AL1G16760' => 'aly', 'AL390U10020' => 'aly', 'AL4G25520' => 'aly', 'AL6G19890' => 'aly', 'AL6G19900' => 'aly', 'AL6G19910' => 'aly', 'AL8G40100' => 'aly', 'Aqoxy2G03562' => 'aox', 'Aqoxy5G00316' => 'aox', 'Aqoxy5G00926' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1628KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1H403S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2FU6SJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.882I6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8YRY2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YN1SN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AF70II' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZA8L1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F916KL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHRD8H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KTZ8QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S22EMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8M29T' => 'arhy', 'AT1G04270' => 'ath', 'AT1G04280' => 'ath', 'AT1G06750' => 'ath', 'AT1G33850' => 'ath', 'AT2G30630' => 'ath', 'AT5G09490' => 'ath', 'AT5G09500' => 'ath', 'AT5G09510' => 'ath', 'AT5G43640' => 'ath', 'AT5G63070' => 'ath', 'ATR0605G315' => 'atr', 'Atru.chr11.175' => 'acertr', 'Atru.chr11.653' => 'acertr', 'Atru.chr3.1616' => 'acertr', 'Atru.chr4.2230' => 'acertr', 'Atru.chr4.2232' => 'acertr', 'Atru.chr5.1598' => 'acertr', 'Atru.chr5.1600' => 'acertr', 'Atru.chr5.2188' => 'acertr', 'AUR62008326' => 'cqu', 'AUR62011922' => 'cqu', 'AUR62011924' => 'cqu', 'AUR62021771' => 'cqu', 'AUR62032237' => 'cqu', 'AUR62032240' => 'cqu', 'BcaB01g05572' => 'bca', 'BcaB02g10337' => 'bca', 'BcaB04g19944' => 'bca', 'BcaB05g21548' => 'bca', 'BcaB05g21549' => 'bca', 'BcaB05g23227' => 'bca', 'BcaB06g26256' => 'bca', 'BcaB06g26257' => 'bca', 'BcaB06g28379' => 'bca', 'BcaC02g11159' => 'bca', 'BcaC03g13258' => 'bca', 'BcaC03g13259' => 'bca', 'BcaC05g24456' => 'bca', 'BcaC05g24457' => 'bca', 'BcaC07g36922' => 'bca', 'BcaC07g36923' => 'bca', 'BcaC07g42050' => 'bca', 'BcaC07g42176' => 'bca', 'BcaC07g42195' => 'bca', 'BcaC07g42196' => 'bca', 'BcaNung06674' => 'bca', 'BolC2t06351H' => 'bol', 'BolC2t06352H' => 'bol', 'BolC3t12993H' => 'bol', 'BolC4t23525H' => 'bol', 'BolC4t27475H' => 'bol', 'BolC5t29025H' => 'bol', 'BolC5t29026H' => 'bol', 'BolC8t46898H' => 'bol', 'BolC8t46899H' => 'bol', 'BolC8t52630H' => 'bol', 'BolC8t52765H' => 'bol', 'BolC9t53824H' => 'bol', 'BraA03t09760Z' => 'bra', 'BraA03t10990Z' => 'bra', 'BraA05t20413Z' => 'bra', 'BraA08t35602Z' => 'bra', 'BraA09t36458Z' => 'bra', 'BraA09t42018Z' => 'bra', 'BraA09t42129Z' => 'bra', 'BraA10t42536Z' => 'bra', 'BraA10t42537Z' => 'bra', 'C01p10690' => 'bna', 'C02p03890' => 'bna', 'C02p03900' => 'bna', 'C03p04620' => 'bna', 'C04p19870' => 'bna', 'C04p59670' => 'bna', 'C05p02460' => 'bna', 'C05p02470' => 'bna', 'C08p00980' => 'bna', 'C08p00990' => 'bna', 'C08p51030' => 'bna', 'C08p52360' => 'bna', 'C09p09120' => 'bna', 'CAN.G19.15' => 'can', 'CAN.G251.10' => 'can', 'CAN.G251.9' => 'can', 'CAN.G398.24' => 'can', 'CAN.G410.32' => 'can', 'CAN.G881.2' => 'can', 'CANSAT01G3025' => 'cansat', 'CANSAT78G1211' => 'cansat', 'CANSAT78G1218' => 'cansat', 'CANSAT78G1521' => 'cansat', 'CANSAT78G1670' => 'cansat', 'CARHR003600' => 'chi', 'CARHR003610' => 'chi', 'CARHR006290' => 'chi', 'CARHR006430' => 'chi', 'CARHR124110' => 'chi', 'CARHR203870' => 'chi', 'CARHR203880' => 'chi', 'CARHR203890' => 'chi', 'CARHR276880' => 'chi', 'Carub.0001s0346' => 'cru', 'Carub.0001s0347' => 'cru', 'Carub.0001s0607' => 'cru', 'Carub.0003s2768' => 'cru', 'Carub.0003s2769' => 'cru', 'Carub.0004s1178' => 'cru', 'Carub.0006s0806' => 'cru', 'Carub.0006s0807' => 'cru', 'Carub.0006s0808' => 'cru', 'Carub.0008s0501' => 'cru', 'Carub.0008s2379' => 'cru', 'Ca_08655_v3' => 'car', 'Ca_08922_v3' => 'car', 'Ca_08923_v3' => 'car', 'Ca_09119_v3' => 'car', 'Ca_09703_v3' => 'car', 'Ca_09705_v3' => 'car', 'Ca_09835_v3' => 'car', 'Ca_26403_v3' => 'car', 'Ca_30719_v3' => 'car', 'CBR_g17958' => 'cbr', 'CBR_g40516' => 'cbr', 'Cc00_g05350' => 'ccan', 'Cc01_g18690' => 'ccan', 'Cc03_g04830' => 'ccan', 'Cc03_g04850' => 'ccan', 'CDE02G4469' => 'cde', 'CDE06G0883' => 'cde', 'CDE06G1295' => 'cde', 'CDE06G1390' => 'cde', 'CDE07G0584' => 'cde', 'CDE07G1084' => 'cde', 'CDE08G1259' => 'cde', 'Cfa002341' => 'cfa', 'Cfa024337' => 'cfa', 'Ciclev10004749m.g' => 'ccl', 'Ciclev10006127m.g' => 'ccl', 'Ciclev10019720m.g' => 'ccl', 'Ciclev10022652m.g' => 'ccl', 'CiPaw.01G190400' => 'cil', 'CiPaw.01G190500' => 'cil', 'CiPaw.02G116400' => 'cil', 'CiPaw.02G116500' => 'cil', 'CiPaw.04G183000' => 'cil', 'CiPaw.04G183300' => 'cil', 'ClCG05G004610' => 'cla', 'ClCG05G004620' => 'cla', 'ClCG06G006730' => 'cla', 'ClCG06G006740' => 'cla', 'ClCG11G003690' => 'cla', 'COL.COLO4_08276' => 'col', 'COL.COLO4_08277' => 'col', 'COL.COLO4_15787' => 'col', 'COL.COLO4_15789' => 'col', 'Cpa.g.c44815' => 'cpa', 'Cpa.g.sc52.144' => 'cpa', 'Cpa.g.sc58.46' => 'cpa', 'Cpa.g.sc58.47' => 'cpa', 'Cre08.g360900' => 'cre', 'CsaV3_2G013030' => 'csa', 'CsaV3_2G013050' => 'csa', 'CsaV3_2G015620' => 'csa', 'CsaV3_3G012590' => 'csa', 'CsaV3_3G012600' => 'csa', 'CSS0001641' => 'camsi', 'CSS0008310' => 'camsi', 'CSS0013011' => 'camsi', 'CSS0017147' => 'camsi', 'CSS0022970' => 'camsi', 'CSS0025655' => 'camsi', 'CSS0028665' => 'camsi', 'CSS0029117' => 'camsi', 'CSS0032024' => 'camsi', 'CSS0039681' => 'camsi', 'CSS0046516' => 'camsi', 'CSS0050307' => 'camsi', 'DCAR_005871' => 'dca', 'DCAR_007342' => 'dca', 'DCAR_024228' => 'dca', 'DCAR_027277' => 'dca', 'DCAR_030718' => 'dca', 'Dinv20287' => 'din', 'Dinv22461' => 'din', 'Dinv22464' => 'din', 'Dinv29912' => 'din', 'Dinv29913' => 'din', 'Dinv34580' => 'din', 'Dinv34582' => 'din', 'Dinv44632' => 'din', 'Duzib052G0266' => 'dzi', 'Duzib133G0907' => 'dzi', 'Duzib133G1034' => 'dzi', 'Duzib138G0207' => 'dzi', 'Duzib138G0491' => 'dzi', 'Duzib151G0812' => 'dzi', 'Duzib151G1166' => 'dzi', 'Duzib168G0192' => 'dzi', 'Duzib211G0077' => 'dzi', 'Duzib212G0429' => 'dzi', 'Duzib212G0472' => 'dzi', 'ECA233G2617' => 'eca', 'ECA236G4188' => 'eca', 'ECA240G0936' => 'eca', 'ECA240G1129' => 'eca', 'ECA247G0623' => 'eca', 'EL10Ac5g10451' => 'bvu', 'EL10Ac5g10453' => 'bvu', 'EL10Ac5g10894' => 'bvu', 'Eucgr.H00192' => 'egr', 'Eucgr.H00193' => 'egr', 'Eucgr.H00194' => 'egr', 'Eucgr.J01562' => 'egr', 'Eucgr.K03301' => 'egr', 'FAN02G0632' => 'fan', 'FAN05G5378' => 'fan', 'FAN09G3247' => 'fan', 'FAN12G0435' => 'fan', 'FAN12G2426' => 'fan', 'FAN14G1707' => 'fan', 'FAN14G4725' => 'fan', 'FAN15G2071' => 'fan', 'FAN17G3065' => 'fan', 'FAN19G1376' => 'fan', 'FAN20G0354' => 'fan', 'FAN20G2429' => 'fan', 'FAN20G2658' => 'fan', 'FAN24G2343' => 'fan', 'FAN27G2362' => 'fan', 'FAN28G1765' => 'fan', 'FvH4_1g16020' => 'fve', 'FvH4_2g04890' => 'fve', 'FvH4_2g22270' => 'fve', 'FvH4_4g02630' => 'fve', 'FvH4_4g02640' => 'fve', 'FvH4_6g02650' => 'fve', 'Glyma.02G140600' => 'gma', 'Glyma.03G159900' => 'gma', 'Glyma.05G234800' => 'gma', 'Glyma.07G269600' => 'gma', 'Glyma.08G042300' => 'gma', 'Glyma.10G033500' => 'gma', 'Glyma.10G185200' => 'gma', 'Glyma.17G004300' => 'gma', 'Glyma.19G161900' => 'gma', 'Glyma.20G205100' => 'gma', 'Glyma.20G205200' => 'gma', 'Gohir.A01G139101' => 'ghi', 'Gohir.A02G035600' => 'ghi', 'Gohir.A02G117901' => 'ghi', 'Gohir.A07G210100' => 'ghi', 'Gohir.A07G210200' => 'ghi', 'Gohir.A08G061100' => 'ghi', 'Gohir.A09G223000' => 'ghi', 'Gohir.A09G223100' => 'ghi', 'Gohir.A10G113900' => 'ghi', 'Gohir.A10G114000' => 'ghi', 'Gohir.D02G042300' => 'ghi', 'Gohir.D07G216100' => 'ghi', 'Gohir.D07G216200' => 'ghi', 'Gohir.D08G070400' => 'ghi', 'Gohir.D09G225000' => 'ghi', 'Gohir.D09G225100' => 'ghi', 'Gohir.D10G152300' => 'ghi', 'Gohir.D10G153200' => 'ghi', 'Gohir.D11G133701' => 'ghi', 'Gorai.004G074100' => 'gra', 'Gorai.005G046800' => 'gra', 'Gorai.006G246500' => 'gra', 'Gorai.006G246600' => 'gra', 'Gorai.007G142900' => 'gra', 'Gorai.011G171000' => 'gra', 'Gorai.011G171100' => 'gra', 'Gorai.013G104300' => 'gra', 'Gorai.013G104400' => 'gra', 'GSVIVG01000754001' => 'vvi', 'GSVIVG01000756001' => 'vvi', 'GSVIVG01010903001' => 'vvi', 'GSVIVG01017623001' => 'vvi', 'GSVIVG01018113001' => 'vvi', 'GSVIVG01018116001' => 'vvi', 'GSVIVG01018118001' => 'vvi', 'HanXRQChr03g0076211' => 'han', 'HanXRQChr03g0092431' => 'han', 'HanXRQChr03g0092441' => 'han', 'HanXRQChr03g0092591' => 'han', 'HanXRQChr03g0092671' => 'han', 'HanXRQChr03g0092681' => 'han', 'HanXRQChr03g0092691' => 'han', 'HanXRQChr03g0092701' => 'han', 'HanXRQChr03g0092721' => 'han', 'HanXRQChr03g0092731' => 'han', 'HanXRQChr04g0113681' => 'han', 'HanXRQChr10g0281371' => 'han', 'HanXRQChr11g0337141' => 'han', 'HanXRQChr13g0424521' => 'han', 'HanXRQChr13g0424531' => 'han', 'HanXRQChr13g0424541' => 'han', 'HanXRQChr16g0498221' => 'han', 'Haze_04377' => 'cav', 'Haze_11298' => 'cav', 'Haze_24547' => 'cav', 'Haze_24550' => 'cav', 'Haze_26587' => 'cav', 'Hma1.2p1_0650F.1_g195410' => 'hma', 'Hma1.2p1_0893F.1_g233470' => 'hma', 'HPP92_006508' => 'vpl', 'HPP92_024780' => 'vpl', 'Hund02688' => 'sun', 'Hund09380' => 'sun', 'Hund09381' => 'sun', 'Hund09832' => 'sun', 'Hund09833' => 'sun', 'Hund11351' => 'sun', 'Hund11513' => 'sun', 'Lalb_Chr06g0162591' => 'lal', 'Lalb_Chr06g0162601' => 'lal', 'Lalb_Chr06g0169321' => 'lal', 'Lalb_Chr09g0330951' => 'lal', 'Lalb_Chr16g0387631' => 'lal', 'Lalb_Chr21g0306241' => 'lal', 'Lalb_Chr25g0290051' => 'lal', 'Lalb_Chr25g0290061' => 'lal', 'Lalb_Chr25g0290071' => 'lal', 'Lj1g0003876' => 'lja', 'Lj1P1207T36' => 'lonja', 'Lj2C1156G12' => 'lonja', 'Lj3A793G39' => 'lonja', 'Lj3C580G2' => 'lonja', 'Lj3C780G2' => 'lonja', 'Lj3C780T4' => 'lonja', 'Lj3C793G9' => 'lonja', 'Lj4g0012960' => 'lja', 'Lj5g0021252' => 'lja', 'Lj5g0021484' => 'lja', 'Lj5g0024528' => 'lja', 'Lj6A399T12' => 'lonja', 'Lj6A656G65' => 'lonja', 'Lsat_1_v5_gn_3_125500' => 'lsa', 'Lsat_1_v5_gn_3_125540' => 'lsa', 'Lsat_1_v5_gn_5_72701' => 'lsa', 'Lsat_1_v5_gn_8_91560' => 'lsa', 'Lsat_1_v5_gn_9_9640' => 'lsa', 'Manes.01G200600' => 'mes', 'Manes.01G200700' => 'mes', 'Manes.03G168900' => 'mes', 'Manes.03G169000' => 'mes', 'Manes.05G085801' => 'mes', 'Manes.05G086200' => 'mes', 'Manes.15G036700' => 'mes', 'Manes.15G036900' => 'mes', 'Mapoly0004s0172' => 'mpo', 'Mapoly0023s0001' => 'mpo', 'Mapoly0142s0012' => 'mpo', 'MBI01_g32854_MAGBIO' => 'mbi', 'MBI11_g24427_MAGBIO' => 'mbi', 'MBI11_g47319_MAGBIO' => 'mbi', 'MCO01G433' => 'mco', 'MD00G1187800' => 'mdo', 'MD04G1226500' => 'mdo', 'MD05G1203900' => 'mdo', 'MD10G1191100' => 'mdo', 'MD12G1243500' => 'mdo', 'MD13G1207000' => 'mdo', 'MD13G1207100' => 'mdo', 'MD16G1208600' => 'mdo', 'Medtr1g050352' => 'mtr', 'Medtr1g070385' => 'mtr', 'Medtr1g070450' => 'mtr', 'Medtr1g075200' => 'mtr', 'Medtr1g075250' => 'mtr', 'Medtr1g075260' => 'mtr', 'Medtr1g475250' => 'mtr', 'Medtr4g075450' => 'mtr', 'Medtr7g096300' => 'mtr', 'Medtr8g105110' => 'mtr', 'MELO3C006470.2' => 'cme', 'MELO3C006471.2' => 'cme', 'MELO3C020772.2' => 'cme', 'MELO3C026780.2' => 'cme', 'MELO3C026781.2' => 'cme', 'Migut.D00390' => 'egut', 'Migut.G00435' => 'egut', 'Migut.G00436' => 'egut', 'Migut.G00718' => 'egut', 'MSTRG.21891' => 'ama', 'MSTRG.26910' => 'ama', 'MSTRG.4099' => 'ama', 'MSTRG.9925' => 'ama', 'Nitab4.5_0000165g0010' => 'nta', 'Nitab4.5_0000209g0180' => 'nta', 'Nitab4.5_0000244g0440' => 'nta', 'Nitab4.5_0000525g0220' => 'nta', 'Nitab4.5_0001597g0020' => 'nta', 'Nitab4.5_0001878g0040' => 'nta', 'Nitab4.5_0001878g0060' => 'nta', 'Nitab4.5_0002838g0100' => 'nta', 'Nitab4.5_0002838g0120' => 'nta', 'Nitab4.5_0004798g0030' => 'nta', 'Nitab4.5_0005420g0010' => 'nta', 'Nitab4.5_0005507g0010' => 'nta', 'Nitab4.5_0005574g0020' => 'nta', 'Nitab4.5_0005838g0010' => 'nta', 'Nitab4.5_0010580g0020' => 'nta', 'Nn1g02599' => 'nnu', 'Nn1g02608' => 'nnu', 'Nn3g17742' => 'nnu', 'Nn3g19534' => 'nnu', 'Nn3g19535' => 'nnu', 'Oeu008790.1' => 'oeu', 'Oeu008792.1' => 'oeu', 'Oeu032590.1' => 'oeu', 'Oeu035349.1' => 'oeu', 'Oeu049791.1' => 'oeu', 'Os01g0774500' => 'osa', 'Os03g0628800' => 'osa', 'Os03g0798600' => 'osa', 'Os05g0508800' => 'osa', 'Peaxi162Scf00036g02018' => 'pax', 'Peaxi162Scf00578g00032' => 'pax', 'Peaxi162Scf00578g00317' => 'pax', 'Peaxi162Scf00785g00114' => 'pax', 'Peaxi162Scf00813g00119' => 'pax', 'Peaxi162Scf00906g00227' => 'pax', 'PGR004G0875' => 'pgr', 'PGR004G2424' => 'pgr', 'PGR031G1239' => 'pgr', 'PGR031G2474' => 'pgr', 'PGR044G0423' => 'pgr', 'PGSC0003DMG400001128' => 'stu', 'PGSC0003DMG400007336' => 'stu', 'PGSC0003DMG400016318' => 'stu', 'PGSC0003DMG400016319' => 'stu', 'PGSC0003DMG400018074' => 'stu', 'Phvul.001G157700' => 'pvu', 'Phvul.002G148550' => 'pvu', 'Phvul.002G320200' => 'pvu', 'Phvul.003G089200' => 'pvu', 'Phvul.007G126000' => 'pvu', 'Phvul.007G126100' => 'pvu', 'Phvul.007G178000' => 'pvu', 'Phvul.007G178200' => 'pvu', 'Potri.002G043000' => 'ptr', 'Potri.002G043200' => 'ptr', 'Potri.003G123750' => 'ptr', 'Potri.005G055401' => 'ptr', 'Potri.005G219700' => 'ptr', 'Potri.005G220000' => 'ptr', 'Potri.008G161901' => 'ptr', 'Potri.008G162000' => 'ptr', 'Potri.008G162400' => 'ptr', 'Potri.010G076900' => 'ptr', 'Pp3c12_9180' => 'ppa', 'Pp3c13_19770' => 'ppa', 'Pp3c14_22950' => 'ppa', 'Pp3c16_12160' => 'ppa', 'Pp3c27_7820' => 'ppa', 'Pp3c2_3490' => 'ppa', 'Pp3c3_23700' => 'ppa', 'Pp3c3_36520' => 'ppa', 'Pp3c4_15250' => 'ppa', 'PRCOL_00007002' => 'pco', 'Prupe.1G030600' => 'ppe', 'Prupe.1G030700' => 'ppe', 'Prupe.6G345200' => 'ppe', 'Prupe.8G230300' => 'ppe', 'Prupe.8G230500' => 'ppe', 'Psat3g059600' => 'psa', 'Psat5g200920' => 'psa', 'Psat6g056440' => 'psa', 'Psat6g057360' => 'psa', 'Psat6g134120' => 'psa', 'Psat6g134160' => 'psa', 'Psat7g008640' => 'psa', 'Psat7g185240' => 'psa', 'PSO017G1330' => 'pso', 'PSO063G6097' => 'pso', 'PSO170G0835' => 'pso', 'PSO170G2499' => 'pso', 'PSO210G5058' => 'pso', 'PSO210G6154' => 'pso', 'PSO585G0031' => 'pso', 'PSO832G0264' => 'pso', 'PSO832G4288' => 'pso', 'QL03p027355' => 'qlo', 'QL03p027430' => 'qlo', 'QL04p081380' => 'qlo', 'QL06p015642' => 'qlo', 'QL06p015650' => 'qlo', 'QL06p015686' => 'qlo', 'QL12p042927' => 'qlo', 'QL93p1863_0035' => 'qlo', 'RcHm_v2.0_Chr3g0450581' => 'rch', 'RcHm_v2.0_Chr4g0390371' => 'rch', 'RcHm_v2.0_Chr4g0390381' => 'rch', 'RcHm_v2.0_Chr4g0390491' => 'rch', 'RcHm_v2.0_Chr4g0390501' => 'rch', 'RcHm_v2.0_Chr6g0289231' => 'rch', 'Rhsim04G0190400' => 'rsi', 'Rhsim04G0190500' => 'rsi', 'Rhsim04G0190600' => 'rsi', 'Rhsim13G0031400' => 'rsi', 'Rhsim13G0165600' => 'rsi', 'RhsimUnG0114600' => 'rsi', 'RhsimUnG0114700' => 'rsi', 'Sabra02G0034800' => 'sbr', 'Sabra02G0035100' => 'sbr', 'Sabra05G0168600' => 'sbr', 'Sabra05G0168800' => 'sbr', 'Sabra08G0123700' => 'sbr', 'Sabra10G0031900' => 'sbr', 'Sabra13G0039000' => 'sbr', 'SalBow2G0782' => 'sbo', 'SalBow2G1403' => 'sbo', 'SalBow4G0074' => 'sbo', 'SalBow4G2635' => 'sbo', 'SalBow5G3010' => 'sbo', 'Sc05g0000870' => 'sci', 'Sc05g0000890' => 'sci', 'Sc13g0005000' => 'sci', 'Sc13g0005030' => 'sci', 'Sc19g0003790' => 'sci', 'Sc19g0003800' => 'sci', 'Sed0003467' => 'sed', 'Sed0009355' => 'sed', 'Sed0009894' => 'sed', 'Sed0011972' => 'sed', 'Sed0021483' => 'sed', 'Sed0021750' => 'sed', 'Sed0026279' => 'sed', 'SEGI_05312' => 'sgi', 'SEGI_10112' => 'sgi', 'SEGI_15835' => 'sgi', 'SEGI_30386' => 'sgi', 'SEGI_34122' => 'sgi', 'SEGI_35063' => 'sgi', 'SGA_v2.0_scaffold101G29794' => 'sas', 'SGA_v2.0_scaffold1G00573' => 'sas', 'SGA_v2.0_scaffold79G25637' => 'sas', 'SGA_v2.0_scaffold88G27283' => 'sas', 'SGA_v2.0_scaffold88G27285' => 'sas', 'SGA_v2.0_scaffold88G27331' => 'sas', 'SHI09937' => 'shi', 'SMO119G0302' => 'smo', 'SMO137G0231' => 'smo', 'SMO367G1151' => 'smo', 'Solyc02g082000.3' => 'sly', 'Solyc06g031670.3' => 'sly', 'Solyc06g053810.3' => 'sly', 'Solyc07g025457.1' => 'sly', 'Solyc08g059740.1' => 'sly', 'Solyc08g059750.3' => 'sly', 'Solyc09g083370.3' => 'sly', 'Solyc12g038950.3' => 'sly', 'Sopen02g026630' => 'spe', 'Sopen06g018930' => 'spe', 'Sopen06g018940' => 'spe', 'Sopen08g009460' => 'spe', 'Sopen09g032290' => 'spe', 'Sp1g03080' => 'spa', 'Sp1g03090' => 'spa', 'Sp1g05480' => 'spa', 'Sp2g07860' => 'spa', 'Sp2g08430' => 'spa', 'Sp2g08440' => 'spa', 'Sp2g26200' => 'spa', 'Sp4g13170' => 'spa', 'Sp6g33840' => 'spa', 'SpUn1204_0010' => 'spa', 'TAR365G0908' => 'tar', 'TAR381G1270' => 'tar', 'TAR381G1651' => 'tar', 'TAR625G1131' => 'tar', 'TAR633G0962' => 'tar', 'TAR633G1729' => 'tar', 'TAR633G1864' => 'tar', 'TAR636G0221' => 'tar', 'TAR636G0314' => 'tar', 'TAR636G3202' => 'tar', 'THA.LOC104800805' => 'tha', 'THA.LOC104801096' => 'tha', 'THA.LOC104801555' => 'tha', 'THA.LOC104808491' => 'tha', 'THA.LOC104808595' => 'tha', 'THA.LOC104815985' => 'tha', 'THA.LOC104822250' => 'tha', 'THA.LOC104826071' => 'tha', 'Thecc.01G265200' => 'tca', 'Thecc.01G265300' => 'tca', 'Thecc.01G265700' => 'tca', 'Thecc.03G109100' => 'tca', 'Thecc.04G245900' => 'tca', 'Thecc.04G246000' => 'tca', 'Thhalv10003334m.g' => 'esa', 'Thhalv10005508m.g' => 'esa', 'Thhalv10005643m.g' => 'esa', 'Thhalv10007316m.g' => 'esa', 'Thhalv10009006m.g' => 'esa', 'Thhalv10009309m.g' => 'esa', 'Thhalv10014917m.g' => 'esa', 'Thhalv10014919m.g' => 'esa', 'Thhalv10015393m.g' => 'esa', 'Thhalv10016515m.g' => 'esa', 'Thhalv10029242m.g' => 'esa', 'TPR.G16654' => 'tpr', 'TPR.G20589' => 'tpr', 'TPR.G23029' => 'tpr', 'TPR.G27731' => 'tpr', 'TPR.G28889' => 'tpr', 'TPR.G28899' => 'tpr', 'TPR.G30846' => 'tpr', 'TPR.G5452' => 'tpr', 'TPR.G5713' => 'tpr', 'TPR.G9046' => 'tpr', 'TPR.G9061' => 'tpr', 'TWI09G1075' => 'twi', 'TWI12G0806' => 'twi', 'TWI18G0108' => 'twi', 'TWI53G1361' => 'twi', 'TWI73G0185' => 'twi', 'TWI73G0427' => 'twi', 'unitig_37.g12001' => 'ugi', 'unitig_747.g21660' => 'ugi', 'unitig_748.g7232' => 'ugi', 'unitig_748.g7315' => 'ugi', 'unitig_85.g27262' => 'ugi', 'unitig_92.g28220' => 'ugi', 'vmacro02632' => 'vma', 'vmacro08410' => 'vma', 'vmacro08411' => 'vma', 'vmacro15407' => 'vma', 'VMungo0251G3619' => 'vmu', 'VMungo0720G1204' => 'vmu', 'VMungo0720G1918' => 'vmu', 'VMungo0720G2387' => 'vmu', 'VMungo0720G2961' => 'vmu', 'VMungo1215G2154' => 'vmu', 'VMungo1383G2411' => 'vmu', 'Zm00001eb051130' => 'zma', 'Zm00001eb116830' => 'zma', 'Zm00001eb116850' => 'zma', 'Zm00001eb151740' => 'zma', 'Zm00001eb292360' => 'zma', 'Zm00001eb301640' => 'zma' ) $gf_id = 'HOM05D000856' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000856' ) $data_identifier = 'HOM05D000856' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 13, 'ath' => (int) 10, 'atr' => (int) 1, 'acertr' => (int) 8, 'cqu' => (int) 6, 'bca' => (int) 21, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 11, 'car' => (int) 9, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 8, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 5, 'fan' => (int) 16, 'fve' => (int) 6, 'gma' => (int) 11, 'ghi' => (int) 19, 'gra' => (int) 9, 'vvi' => (int) 7, 'han' => (int) 17, 'cav' => (int) 5, 'hma' => (int) 2, 'vpl' => (int) 2, 'sun' => (int) 7, 'lal' => (int) 9, 'lja' => (int) 5, 'lonja' => (int) 9, 'lsa' => (int) 5, 'mes' => (int) 8, 'mpo' => (int) 3, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 10, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 15, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 9, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 9, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 6, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 5, 'spa' => (int) 10, 'tar' => (int) 10, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 11, 'tpr' => (int) 11, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 4, 'vmu' => (int) 7, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb301640' $species_info = array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ) $local_species = 'mbi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000856', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p00010' => 'bna', 'A03p04160' => 'bna', 'A03p17160' => 'bna', 'A04p23370' => 'bna', 'A05p14860' => 'bna', 'A08p37020' => 'bna', 'A09p08050' => 'bna', 'A09p66800' => 'bna', 'A09p67940' => 'bna', 'A10p02680' => 'bna', 'A10p05320' => 'bna', 'Aa31LG1G20560' => 'aar', 'Aa31LG1G20610' => 'aar', 'Aa31LG1G7810' => 'aar', 'Aa31LG5G3590' => 'aar', 'Aa31LG5G6140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3819' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4683' => 'aag', 'Actinidia04480' => 'ach', 'Actinidia05466' => 'ach', 'Actinidia08445' => 'ach', 'Actinidia21170' => 'ach', 'Actinidia24812' => 'ach', 'Actinidia24951' => 'ach', 'Actinidia40088' => 'ach', 'Ah.02g111660' => 'amhyb', 'Ah.11g048900' => 'amhyb', 'Ah.11g049910' => 'amhyb', 'AL1G13870' => 'aly', 'AL1G13880' => 'aly', 'AL1G16760' => 'aly', 'AL390U10020' => 'aly', 'AL4G25520' => 'aly', 'AL6G19890' => 'aly', 'AL6G19900' => 'aly', 'AL6G19910' => 'aly', 'AL8G40100' => 'aly', 'Aqoxy2G03562' => 'aox', 'Aqoxy5G00316' => 'aox', 'Aqoxy5G00926' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1628KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1H403S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2FU6SJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.882I6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8YRY2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YN1SN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AF70II' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZA8L1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F916KL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHRD8H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KTZ8QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S22EMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8M29T' => 'arhy', 'AT1G04270' => 'ath', 'AT1G04280' => 'ath', 'AT1G06750' => 'ath', 'AT1G33850' => 'ath', 'AT2G30630' => 'ath', 'AT5G09490' => 'ath', 'AT5G09500' => 'ath', 'AT5G09510' => 'ath', 'AT5G43640' => 'ath', 'AT5G63070' => 'ath', 'ATR0605G315' => 'atr', 'Atru.chr11.175' => 'acertr', 'Atru.chr11.653' => 'acertr', 'Atru.chr3.1616' => 'acertr', 'Atru.chr4.2230' => 'acertr', 'Atru.chr4.2232' => 'acertr', 'Atru.chr5.1598' => 'acertr', 'Atru.chr5.1600' => 'acertr', 'Atru.chr5.2188' => 'acertr', 'AUR62008326' => 'cqu', 'AUR62011922' => 'cqu', 'AUR62011924' => 'cqu', 'AUR62021771' => 'cqu', 'AUR62032237' => 'cqu', 'AUR62032240' => 'cqu', 'BcaB01g05572' => 'bca', 'BcaB02g10337' => 'bca', 'BcaB04g19944' => 'bca', 'BcaB05g21548' => 'bca', 'BcaB05g21549' => 'bca', 'BcaB05g23227' => 'bca', 'BcaB06g26256' => 'bca', 'BcaB06g26257' => 'bca', 'BcaB06g28379' => 'bca', 'BcaC02g11159' => 'bca', 'BcaC03g13258' => 'bca', 'BcaC03g13259' => 'bca', 'BcaC05g24456' => 'bca', 'BcaC05g24457' => 'bca', 'BcaC07g36922' => 'bca', 'BcaC07g36923' => 'bca', 'BcaC07g42050' => 'bca', 'BcaC07g42176' => 'bca', 'BcaC07g42195' => 'bca', 'BcaC07g42196' => 'bca', 'BcaNung06674' => 'bca', 'BolC2t06351H' => 'bol', 'BolC2t06352H' => 'bol', 'BolC3t12993H' => 'bol', 'BolC4t23525H' => 'bol', 'BolC4t27475H' => 'bol', 'BolC5t29025H' => 'bol', 'BolC5t29026H' => 'bol', 'BolC8t46898H' => 'bol', 'BolC8t46899H' => 'bol', 'BolC8t52630H' => 'bol', 'BolC8t52765H' => 'bol', 'BolC9t53824H' => 'bol', 'BraA03t09760Z' => 'bra', 'BraA03t10990Z' => 'bra', 'BraA05t20413Z' => 'bra', 'BraA08t35602Z' => 'bra', 'BraA09t36458Z' => 'bra', 'BraA09t42018Z' => 'bra', 'BraA09t42129Z' => 'bra', 'BraA10t42536Z' => 'bra', 'BraA10t42537Z' => 'bra', 'C01p10690' => 'bna', 'C02p03890' => 'bna', 'C02p03900' => 'bna', 'C03p04620' => 'bna', 'C04p19870' => 'bna', 'C04p59670' => 'bna', 'C05p02460' => 'bna', 'C05p02470' => 'bna', 'C08p00980' => 'bna', 'C08p00990' => 'bna', 'C08p51030' => 'bna', 'C08p52360' => 'bna', 'C09p09120' => 'bna', 'CAN.G19.15' => 'can', 'CAN.G251.10' => 'can', 'CAN.G251.9' => 'can', 'CAN.G398.24' => 'can', 'CAN.G410.32' => 'can', 'CAN.G881.2' => 'can', 'CANSAT01G3025' => 'cansat', 'CANSAT78G1211' => 'cansat', 'CANSAT78G1218' => 'cansat', 'CANSAT78G1521' => 'cansat', 'CANSAT78G1670' => 'cansat', 'CARHR003600' => 'chi', 'CARHR003610' => 'chi', 'CARHR006290' => 'chi', 'CARHR006430' => 'chi', 'CARHR124110' => 'chi', 'CARHR203870' => 'chi', 'CARHR203880' => 'chi', 'CARHR203890' => 'chi', 'CARHR276880' => 'chi', 'Carub.0001s0346' => 'cru', 'Carub.0001s0347' => 'cru', 'Carub.0001s0607' => 'cru', 'Carub.0003s2768' => 'cru', 'Carub.0003s2769' => 'cru', 'Carub.0004s1178' => 'cru', 'Carub.0006s0806' => 'cru', 'Carub.0006s0807' => 'cru', 'Carub.0006s0808' => 'cru', 'Carub.0008s0501' => 'cru', 'Carub.0008s2379' => 'cru', 'Ca_08655_v3' => 'car', 'Ca_08922_v3' => 'car', 'Ca_08923_v3' => 'car', 'Ca_09119_v3' => 'car', 'Ca_09703_v3' => 'car', 'Ca_09705_v3' => 'car', 'Ca_09835_v3' => 'car', 'Ca_26403_v3' => 'car', 'Ca_30719_v3' => 'car', 'CBR_g17958' => 'cbr', 'CBR_g40516' => 'cbr', 'Cc00_g05350' => 'ccan', 'Cc01_g18690' => 'ccan', 'Cc03_g04830' => 'ccan', 'Cc03_g04850' => 'ccan', 'CDE02G4469' => 'cde', 'CDE06G0883' => 'cde', 'CDE06G1295' => 'cde', 'CDE06G1390' => 'cde', 'CDE07G0584' => 'cde', 'CDE07G1084' => 'cde', 'CDE08G1259' => 'cde', 'Cfa002341' => 'cfa', 'Cfa024337' => 'cfa', 'Ciclev10004749m.g' => 'ccl', 'Ciclev10006127m.g' => 'ccl', 'Ciclev10019720m.g' => 'ccl', 'Ciclev10022652m.g' => 'ccl', 'CiPaw.01G190400' => 'cil', 'CiPaw.01G190500' => 'cil', 'CiPaw.02G116400' => 'cil', 'CiPaw.02G116500' => 'cil', 'CiPaw.04G183000' => 'cil', 'CiPaw.04G183300' => 'cil', 'ClCG05G004610' => 'cla', 'ClCG05G004620' => 'cla', 'ClCG06G006730' => 'cla', 'ClCG06G006740' => 'cla', 'ClCG11G003690' => 'cla', 'COL.COLO4_08276' => 'col', 'COL.COLO4_08277' => 'col', 'COL.COLO4_15787' => 'col', 'COL.COLO4_15789' => 'col', 'Cpa.g.c44815' => 'cpa', 'Cpa.g.sc52.144' => 'cpa', 'Cpa.g.sc58.46' => 'cpa', 'Cpa.g.sc58.47' => 'cpa', 'Cre08.g360900' => 'cre', 'CsaV3_2G013030' => 'csa', 'CsaV3_2G013050' => 'csa', 'CsaV3_2G015620' => 'csa', 'CsaV3_3G012590' => 'csa', 'CsaV3_3G012600' => 'csa', 'CSS0001641' => 'camsi', 'CSS0008310' => 'camsi', 'CSS0013011' => 'camsi', 'CSS0017147' => 'camsi', 'CSS0022970' => 'camsi', 'CSS0025655' => 'camsi', 'CSS0028665' => 'camsi', 'CSS0029117' => 'camsi', 'CSS0032024' => 'camsi', 'CSS0039681' => 'camsi', 'CSS0046516' => 'camsi', 'CSS0050307' => 'camsi', 'DCAR_005871' => 'dca', 'DCAR_007342' => 'dca', 'DCAR_024228' => 'dca', 'DCAR_027277' => 'dca', 'DCAR_030718' => 'dca', 'Dinv20287' => 'din', 'Dinv22461' => 'din', 'Dinv22464' => 'din', 'Dinv29912' => 'din', 'Dinv29913' => 'din', 'Dinv34580' => 'din', 'Dinv34582' => 'din', 'Dinv44632' => 'din', 'Duzib052G0266' => 'dzi', 'Duzib133G0907' => 'dzi', 'Duzib133G1034' => 'dzi', 'Duzib138G0207' => 'dzi', 'Duzib138G0491' => 'dzi', 'Duzib151G0812' => 'dzi', 'Duzib151G1166' => 'dzi', 'Duzib168G0192' => 'dzi', 'Duzib211G0077' => 'dzi', 'Duzib212G0429' => 'dzi', 'Duzib212G0472' => 'dzi', 'ECA233G2617' => 'eca', 'ECA236G4188' => 'eca', 'ECA240G0936' => 'eca', 'ECA240G1129' => 'eca', 'ECA247G0623' => 'eca', 'EL10Ac5g10451' => 'bvu', 'EL10Ac5g10453' => 'bvu', 'EL10Ac5g10894' => 'bvu', 'Eucgr.H00192' => 'egr', 'Eucgr.H00193' => 'egr', 'Eucgr.H00194' => 'egr', 'Eucgr.J01562' => 'egr', 'Eucgr.K03301' => 'egr', 'FAN02G0632' => 'fan', 'FAN05G5378' => 'fan', 'FAN09G3247' => 'fan', 'FAN12G0435' => 'fan', 'FAN12G2426' => 'fan', 'FAN14G1707' => 'fan', 'FAN14G4725' => 'fan', 'FAN15G2071' => 'fan', 'FAN17G3065' => 'fan', 'FAN19G1376' => 'fan', 'FAN20G0354' => 'fan', 'FAN20G2429' => 'fan', 'FAN20G2658' => 'fan', 'FAN24G2343' => 'fan', 'FAN27G2362' => 'fan', 'FAN28G1765' => 'fan', 'FvH4_1g16020' => 'fve', 'FvH4_2g04890' => 'fve', 'FvH4_2g22270' => 'fve', 'FvH4_4g02630' => 'fve', 'FvH4_4g02640' => 'fve', 'FvH4_6g02650' => 'fve', 'Glyma.02G140600' => 'gma', 'Glyma.03G159900' => 'gma', 'Glyma.05G234800' => 'gma', 'Glyma.07G269600' => 'gma', 'Glyma.08G042300' => 'gma', 'Glyma.10G033500' => 'gma', 'Glyma.10G185200' => 'gma', 'Glyma.17G004300' => 'gma', 'Glyma.19G161900' => 'gma', 'Glyma.20G205100' => 'gma', 'Glyma.20G205200' => 'gma', 'Gohir.A01G139101' => 'ghi', 'Gohir.A02G035600' => 'ghi', 'Gohir.A02G117901' => 'ghi', 'Gohir.A07G210100' => 'ghi', 'Gohir.A07G210200' => 'ghi', 'Gohir.A08G061100' => 'ghi', 'Gohir.A09G223000' => 'ghi', 'Gohir.A09G223100' => 'ghi', 'Gohir.A10G113900' => 'ghi', 'Gohir.A10G114000' => 'ghi', 'Gohir.D02G042300' => 'ghi', 'Gohir.D07G216100' => 'ghi', 'Gohir.D07G216200' => 'ghi', 'Gohir.D08G070400' => 'ghi', 'Gohir.D09G225000' => 'ghi', 'Gohir.D09G225100' => 'ghi', 'Gohir.D10G152300' => 'ghi', 'Gohir.D10G153200' => 'ghi', 'Gohir.D11G133701' => 'ghi', 'Gorai.004G074100' => 'gra', 'Gorai.005G046800' => 'gra', 'Gorai.006G246500' => 'gra', 'Gorai.006G246600' => 'gra', 'Gorai.007G142900' => 'gra', 'Gorai.011G171000' => 'gra', 'Gorai.011G171100' => 'gra', 'Gorai.013G104300' => 'gra', 'Gorai.013G104400' => 'gra', 'GSVIVG01000754001' => 'vvi', 'GSVIVG01000756001' => 'vvi', 'GSVIVG01010903001' => 'vvi', 'GSVIVG01017623001' => 'vvi', 'GSVIVG01018113001' => 'vvi', 'GSVIVG01018116001' => 'vvi', 'GSVIVG01018118001' => 'vvi', 'HanXRQChr03g0076211' => 'han', 'HanXRQChr03g0092431' => 'han', 'HanXRQChr03g0092441' => 'han', 'HanXRQChr03g0092591' => 'han', 'HanXRQChr03g0092671' => 'han', 'HanXRQChr03g0092681' => 'han', 'HanXRQChr03g0092691' => 'han', 'HanXRQChr03g0092701' => 'han', 'HanXRQChr03g0092721' => 'han', 'HanXRQChr03g0092731' => 'han', 'HanXRQChr04g0113681' => 'han', 'HanXRQChr10g0281371' => 'han', 'HanXRQChr11g0337141' => 'han', 'HanXRQChr13g0424521' => 'han', 'HanXRQChr13g0424531' => 'han', 'HanXRQChr13g0424541' => 'han', 'HanXRQChr16g0498221' => 'han', 'Haze_04377' => 'cav', 'Haze_11298' => 'cav', 'Haze_24547' => 'cav', 'Haze_24550' => 'cav', 'Haze_26587' => 'cav', 'Hma1.2p1_0650F.1_g195410' => 'hma', 'Hma1.2p1_0893F.1_g233470' => 'hma', 'HPP92_006508' => 'vpl', 'HPP92_024780' => 'vpl', 'Hund02688' => 'sun', 'Hund09380' => 'sun', 'Hund09381' => 'sun', 'Hund09832' => 'sun', 'Hund09833' => 'sun', 'Hund11351' => 'sun', 'Hund11513' => 'sun', 'Lalb_Chr06g0162591' => 'lal', 'Lalb_Chr06g0162601' => 'lal', 'Lalb_Chr06g0169321' => 'lal', 'Lalb_Chr09g0330951' => 'lal', 'Lalb_Chr16g0387631' => 'lal', 'Lalb_Chr21g0306241' => 'lal', 'Lalb_Chr25g0290051' => 'lal', 'Lalb_Chr25g0290061' => 'lal', 'Lalb_Chr25g0290071' => 'lal', 'Lj1g0003876' => 'lja', 'Lj1P1207T36' => 'lonja', 'Lj2C1156G12' => 'lonja', 'Lj3A793G39' => 'lonja', 'Lj3C580G2' => 'lonja', 'Lj3C780G2' => 'lonja', 'Lj3C780T4' => 'lonja', 'Lj3C793G9' => 'lonja', 'Lj4g0012960' => 'lja', 'Lj5g0021252' => 'lja', 'Lj5g0021484' => 'lja', 'Lj5g0024528' => 'lja', 'Lj6A399T12' => 'lonja', 'Lj6A656G65' => 'lonja', 'Lsat_1_v5_gn_3_125500' => 'lsa', 'Lsat_1_v5_gn_3_125540' => 'lsa', 'Lsat_1_v5_gn_5_72701' => 'lsa', 'Lsat_1_v5_gn_8_91560' => 'lsa', 'Lsat_1_v5_gn_9_9640' => 'lsa', 'Manes.01G200600' => 'mes', 'Manes.01G200700' => 'mes', 'Manes.03G168900' => 'mes', 'Manes.03G169000' => 'mes', 'Manes.05G085801' => 'mes', 'Manes.05G086200' => 'mes', 'Manes.15G036700' => 'mes', 'Manes.15G036900' => 'mes', 'Mapoly0004s0172' => 'mpo', 'Mapoly0023s0001' => 'mpo', 'Mapoly0142s0012' => 'mpo', 'MBI01_g32854_MAGBIO' => 'mbi', 'MBI11_g24427_MAGBIO' => 'mbi', 'MBI11_g47319_MAGBIO' => 'mbi', 'MCO01G433' => 'mco', 'MD00G1187800' => 'mdo', 'MD04G1226500' => 'mdo', 'MD05G1203900' => 'mdo', 'MD10G1191100' => 'mdo', 'MD12G1243500' => 'mdo', 'MD13G1207000' => 'mdo', 'MD13G1207100' => 'mdo', 'MD16G1208600' => 'mdo', 'Medtr1g050352' => 'mtr', 'Medtr1g070385' => 'mtr', 'Medtr1g070450' => 'mtr', 'Medtr1g075200' => 'mtr', 'Medtr1g075250' => 'mtr', 'Medtr1g075260' => 'mtr', 'Medtr1g475250' => 'mtr', 'Medtr4g075450' => 'mtr', 'Medtr7g096300' => 'mtr', 'Medtr8g105110' => 'mtr', 'MELO3C006470.2' => 'cme', 'MELO3C006471.2' => 'cme', 'MELO3C020772.2' => 'cme', 'MELO3C026780.2' => 'cme', 'MELO3C026781.2' => 'cme', 'Migut.D00390' => 'egut', 'Migut.G00435' => 'egut', 'Migut.G00436' => 'egut', 'Migut.G00718' => 'egut', 'MSTRG.21891' => 'ama', 'MSTRG.26910' => 'ama', 'MSTRG.4099' => 'ama', 'MSTRG.9925' => 'ama', 'Nitab4.5_0000165g0010' => 'nta', 'Nitab4.5_0000209g0180' => 'nta', 'Nitab4.5_0000244g0440' => 'nta', 'Nitab4.5_0000525g0220' => 'nta', 'Nitab4.5_0001597g0020' => 'nta', 'Nitab4.5_0001878g0040' => 'nta', 'Nitab4.5_0001878g0060' => 'nta', 'Nitab4.5_0002838g0100' => 'nta', 'Nitab4.5_0002838g0120' => 'nta', 'Nitab4.5_0004798g0030' => 'nta', 'Nitab4.5_0005420g0010' => 'nta', 'Nitab4.5_0005507g0010' => 'nta', 'Nitab4.5_0005574g0020' => 'nta', 'Nitab4.5_0005838g0010' => 'nta', 'Nitab4.5_0010580g0020' => 'nta', 'Nn1g02599' => 'nnu', 'Nn1g02608' => 'nnu', 'Nn3g17742' => 'nnu', 'Nn3g19534' => 'nnu', 'Nn3g19535' => 'nnu', 'Oeu008790.1' => 'oeu', 'Oeu008792.1' => 'oeu', 'Oeu032590.1' => 'oeu', 'Oeu035349.1' => 'oeu', 'Oeu049791.1' => 'oeu', 'Os01g0774500' => 'osa', 'Os03g0628800' => 'osa', 'Os03g0798600' => 'osa', 'Os05g0508800' => 'osa', 'Peaxi162Scf00036g02018' => 'pax', 'Peaxi162Scf00578g00032' => 'pax', 'Peaxi162Scf00578g00317' => 'pax', 'Peaxi162Scf00785g00114' => 'pax', 'Peaxi162Scf00813g00119' => 'pax', 'Peaxi162Scf00906g00227' => 'pax', 'PGR004G0875' => 'pgr', 'PGR004G2424' => 'pgr', 'PGR031G1239' => 'pgr', 'PGR031G2474' => 'pgr', 'PGR044G0423' => 'pgr', 'PGSC0003DMG400001128' => 'stu', 'PGSC0003DMG400007336' => 'stu', 'PGSC0003DMG400016318' => 'stu', 'PGSC0003DMG400016319' => 'stu', 'PGSC0003DMG400018074' => 'stu', 'Phvul.001G157700' => 'pvu', 'Phvul.002G148550' => 'pvu', 'Phvul.002G320200' => 'pvu', 'Phvul.003G089200' => 'pvu', 'Phvul.007G126000' => 'pvu', 'Phvul.007G126100' => 'pvu', 'Phvul.007G178000' => 'pvu', 'Phvul.007G178200' => 'pvu', 'Potri.002G043000' => 'ptr', 'Potri.002G043200' => 'ptr', 'Potri.003G123750' => 'ptr', 'Potri.005G055401' => 'ptr', 'Potri.005G219700' => 'ptr', 'Potri.005G220000' => 'ptr', 'Potri.008G161901' => 'ptr', 'Potri.008G162000' => 'ptr', 'Potri.008G162400' => 'ptr', 'Potri.010G076900' => 'ptr', 'Pp3c12_9180' => 'ppa', 'Pp3c13_19770' => 'ppa', 'Pp3c14_22950' => 'ppa', 'Pp3c16_12160' => 'ppa', 'Pp3c27_7820' => 'ppa', 'Pp3c2_3490' => 'ppa', 'Pp3c3_23700' => 'ppa', 'Pp3c3_36520' => 'ppa', 'Pp3c4_15250' => 'ppa', 'PRCOL_00007002' => 'pco', 'Prupe.1G030600' => 'ppe', 'Prupe.1G030700' => 'ppe', 'Prupe.6G345200' => 'ppe', 'Prupe.8G230300' => 'ppe', 'Prupe.8G230500' => 'ppe', 'Psat3g059600' => 'psa', 'Psat5g200920' => 'psa', 'Psat6g056440' => 'psa', 'Psat6g057360' => 'psa', 'Psat6g134120' => 'psa', 'Psat6g134160' => 'psa', 'Psat7g008640' => 'psa', 'Psat7g185240' => 'psa', 'PSO017G1330' => 'pso', 'PSO063G6097' => 'pso', 'PSO170G0835' => 'pso', 'PSO170G2499' => 'pso', 'PSO210G5058' => 'pso', 'PSO210G6154' => 'pso', 'PSO585G0031' => 'pso', 'PSO832G0264' => 'pso', 'PSO832G4288' => 'pso', 'QL03p027355' => 'qlo', 'QL03p027430' => 'qlo', 'QL04p081380' => 'qlo', 'QL06p015642' => 'qlo', 'QL06p015650' => 'qlo', 'QL06p015686' => 'qlo', 'QL12p042927' => 'qlo', 'QL93p1863_0035' => 'qlo', 'RcHm_v2.0_Chr3g0450581' => 'rch', 'RcHm_v2.0_Chr4g0390371' => 'rch', 'RcHm_v2.0_Chr4g0390381' => 'rch', 'RcHm_v2.0_Chr4g0390491' => 'rch', 'RcHm_v2.0_Chr4g0390501' => 'rch', 'RcHm_v2.0_Chr6g0289231' => 'rch', 'Rhsim04G0190400' => 'rsi', 'Rhsim04G0190500' => 'rsi', 'Rhsim04G0190600' => 'rsi', 'Rhsim13G0031400' => 'rsi', 'Rhsim13G0165600' => 'rsi', 'RhsimUnG0114600' => 'rsi', 'RhsimUnG0114700' => 'rsi', 'Sabra02G0034800' => 'sbr', 'Sabra02G0035100' => 'sbr', 'Sabra05G0168600' => 'sbr', 'Sabra05G0168800' => 'sbr', 'Sabra08G0123700' => 'sbr', 'Sabra10G0031900' => 'sbr', 'Sabra13G0039000' => 'sbr', 'SalBow2G0782' => 'sbo', 'SalBow2G1403' => 'sbo', 'SalBow4G0074' => 'sbo', 'SalBow4G2635' => 'sbo', 'SalBow5G3010' => 'sbo', 'Sc05g0000870' => 'sci', 'Sc05g0000890' => 'sci', 'Sc13g0005000' => 'sci', 'Sc13g0005030' => 'sci', 'Sc19g0003790' => 'sci', 'Sc19g0003800' => 'sci', 'Sed0003467' => 'sed', 'Sed0009355' => 'sed', 'Sed0009894' => 'sed', 'Sed0011972' => 'sed', 'Sed0021483' => 'sed', 'Sed0021750' => 'sed', 'Sed0026279' => 'sed', 'SEGI_05312' => 'sgi', 'SEGI_10112' => 'sgi', 'SEGI_15835' => 'sgi', 'SEGI_30386' => 'sgi', 'SEGI_34122' => 'sgi', 'SEGI_35063' => 'sgi', 'SGA_v2.0_scaffold101G29794' => 'sas', 'SGA_v2.0_scaffold1G00573' => 'sas', 'SGA_v2.0_scaffold79G25637' => 'sas', 'SGA_v2.0_scaffold88G27283' => 'sas', 'SGA_v2.0_scaffold88G27285' => 'sas', 'SGA_v2.0_scaffold88G27331' => 'sas', 'SHI09937' => 'shi', 'SMO119G0302' => 'smo', 'SMO137G0231' => 'smo', 'SMO367G1151' => 'smo', 'Solyc02g082000.3' => 'sly', 'Solyc06g031670.3' => 'sly', 'Solyc06g053810.3' => 'sly', 'Solyc07g025457.1' => 'sly', 'Solyc08g059740.1' => 'sly', 'Solyc08g059750.3' => 'sly', 'Solyc09g083370.3' => 'sly', 'Solyc12g038950.3' => 'sly', 'Sopen02g026630' => 'spe', 'Sopen06g018930' => 'spe', 'Sopen06g018940' => 'spe', 'Sopen08g009460' => 'spe', 'Sopen09g032290' => 'spe', 'Sp1g03080' => 'spa', 'Sp1g03090' => 'spa', 'Sp1g05480' => 'spa', 'Sp2g07860' => 'spa', 'Sp2g08430' => 'spa', 'Sp2g08440' => 'spa', 'Sp2g26200' => 'spa', 'Sp4g13170' => 'spa', 'Sp6g33840' => 'spa', 'SpUn1204_0010' => 'spa', 'TAR365G0908' => 'tar', 'TAR381G1270' => 'tar', 'TAR381G1651' => 'tar', 'TAR625G1131' => 'tar', 'TAR633G0962' => 'tar', 'TAR633G1729' => 'tar', 'TAR633G1864' => 'tar', 'TAR636G0221' => 'tar', 'TAR636G0314' => 'tar', 'TAR636G3202' => 'tar', 'THA.LOC104800805' => 'tha', 'THA.LOC104801096' => 'tha', 'THA.LOC104801555' => 'tha', 'THA.LOC104808491' => 'tha', 'THA.LOC104808595' => 'tha', 'THA.LOC104815985' => 'tha', 'THA.LOC104822250' => 'tha', 'THA.LOC104826071' => 'tha', 'Thecc.01G265200' => 'tca', 'Thecc.01G265300' => 'tca', 'Thecc.01G265700' => 'tca', 'Thecc.03G109100' => 'tca', 'Thecc.04G245900' => 'tca', 'Thecc.04G246000' => 'tca', 'Thhalv10003334m.g' => 'esa', 'Thhalv10005508m.g' => 'esa', 'Thhalv10005643m.g' => 'esa', 'Thhalv10007316m.g' => 'esa', 'Thhalv10009006m.g' => 'esa', 'Thhalv10009309m.g' => 'esa', 'Thhalv10014917m.g' => 'esa', 'Thhalv10014919m.g' => 'esa', 'Thhalv10015393m.g' => 'esa', 'Thhalv10016515m.g' => 'esa', 'Thhalv10029242m.g' => 'esa', 'TPR.G16654' => 'tpr', 'TPR.G20589' => 'tpr', 'TPR.G23029' => 'tpr', 'TPR.G27731' => 'tpr', 'TPR.G28889' => 'tpr', 'TPR.G28899' => 'tpr', 'TPR.G30846' => 'tpr', 'TPR.G5452' => 'tpr', 'TPR.G5713' => 'tpr', 'TPR.G9046' => 'tpr', 'TPR.G9061' => 'tpr', 'TWI09G1075' => 'twi', 'TWI12G0806' => 'twi', 'TWI18G0108' => 'twi', 'TWI53G1361' => 'twi', 'TWI73G0185' => 'twi', 'TWI73G0427' => 'twi', 'unitig_37.g12001' => 'ugi', 'unitig_747.g21660' => 'ugi', 'unitig_748.g7232' => 'ugi', 'unitig_748.g7315' => 'ugi', 'unitig_85.g27262' => 'ugi', 'unitig_92.g28220' => 'ugi', 'vmacro02632' => 'vma', 'vmacro08410' => 'vma', 'vmacro08411' => 'vma', 'vmacro15407' => 'vma', 'VMungo0251G3619' => 'vmu', 'VMungo0720G1204' => 'vmu', 'VMungo0720G1918' => 'vmu', 'VMungo0720G2387' => 'vmu', 'VMungo0720G2961' => 'vmu', 'VMungo1215G2154' => 'vmu', 'VMungo1383G2411' => 'vmu', 'Zm00001eb051130' => 'zma', 'Zm00001eb116830' => 'zma', 'Zm00001eb116850' => 'zma', 'Zm00001eb151740' => 'zma', 'Zm00001eb292360' => 'zma', 'Zm00001eb301640' => 'zma' ), 'gf_id' => 'HOM05D000856', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000856' ), 'data_identifier' => 'HOM05D000856', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000856', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p00010' => 'bna', 'A03p04160' => 'bna', 'A03p17160' => 'bna', 'A04p23370' => 'bna', 'A05p14860' => 'bna', 'A08p37020' => 'bna', 'A09p08050' => 'bna', 'A09p66800' => 'bna', 'A09p67940' => 'bna', 'A10p02680' => 'bna', 'A10p05320' => 'bna', 'Aa31LG1G20560' => 'aar', 'Aa31LG1G20610' => 'aar', 'Aa31LG1G7810' => 'aar', 'Aa31LG5G3590' => 'aar', 'Aa31LG5G6140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3819' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4683' => 'aag', 'Actinidia04480' => 'ach', 'Actinidia05466' => 'ach', 'Actinidia08445' => 'ach', 'Actinidia21170' => 'ach', 'Actinidia24812' => 'ach', 'Actinidia24951' => 'ach', 'Actinidia40088' => 'ach', 'Ah.02g111660' => 'amhyb', 'Ah.11g048900' => 'amhyb', 'Ah.11g049910' => 'amhyb', 'AL1G13870' => 'aly', 'AL1G13880' => 'aly', 'AL1G16760' => 'aly', 'AL390U10020' => 'aly', 'AL4G25520' => 'aly', 'AL6G19890' => 'aly', 'AL6G19900' => 'aly', 'AL6G19910' => 'aly', 'AL8G40100' => 'aly', 'Aqoxy2G03562' => 'aox', 'Aqoxy5G00316' => 'aox', 'Aqoxy5G00926' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1628KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1H403S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2FU6SJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.882I6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8YRY2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YN1SN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AF70II' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZA8L1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F916KL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHRD8H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KTZ8QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S22EMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8M29T' => 'arhy', 'AT1G04270' => 'ath', 'AT1G04280' => 'ath', 'AT1G06750' => 'ath', 'AT1G33850' => 'ath', 'AT2G30630' => 'ath', 'AT5G09490' => 'ath', 'AT5G09500' => 'ath', 'AT5G09510' => 'ath', 'AT5G43640' => 'ath', 'AT5G63070' => 'ath', 'ATR0605G315' => 'atr', 'Atru.chr11.175' => 'acertr', 'Atru.chr11.653' => 'acertr', 'Atru.chr3.1616' => 'acertr', 'Atru.chr4.2230' => 'acertr', 'Atru.chr4.2232' => 'acertr', 'Atru.chr5.1598' => 'acertr', 'Atru.chr5.1600' => 'acertr', 'Atru.chr5.2188' => 'acertr', 'AUR62008326' => 'cqu', 'AUR62011922' => 'cqu', 'AUR62011924' => 'cqu', 'AUR62021771' => 'cqu', 'AUR62032237' => 'cqu', 'AUR62032240' => 'cqu', 'BcaB01g05572' => 'bca', 'BcaB02g10337' => 'bca', 'BcaB04g19944' => 'bca', 'BcaB05g21548' => 'bca', 'BcaB05g21549' => 'bca', 'BcaB05g23227' => 'bca', 'BcaB06g26256' => 'bca', 'BcaB06g26257' => 'bca', 'BcaB06g28379' => 'bca', 'BcaC02g11159' => 'bca', 'BcaC03g13258' => 'bca', 'BcaC03g13259' => 'bca', 'BcaC05g24456' => 'bca', 'BcaC05g24457' => 'bca', 'BcaC07g36922' => 'bca', 'BcaC07g36923' => 'bca', 'BcaC07g42050' => 'bca', 'BcaC07g42176' => 'bca', 'BcaC07g42195' => 'bca', 'BcaC07g42196' => 'bca', 'BcaNung06674' => 'bca', 'BolC2t06351H' => 'bol', 'BolC2t06352H' => 'bol', 'BolC3t12993H' => 'bol', 'BolC4t23525H' => 'bol', 'BolC4t27475H' => 'bol', 'BolC5t29025H' => 'bol', 'BolC5t29026H' => 'bol', 'BolC8t46898H' => 'bol', 'BolC8t46899H' => 'bol', 'BolC8t52630H' => 'bol', 'BolC8t52765H' => 'bol', 'BolC9t53824H' => 'bol', 'BraA03t09760Z' => 'bra', 'BraA03t10990Z' => 'bra', 'BraA05t20413Z' => 'bra', 'BraA08t35602Z' => 'bra', 'BraA09t36458Z' => 'bra', 'BraA09t42018Z' => 'bra', 'BraA09t42129Z' => 'bra', 'BraA10t42536Z' => 'bra', 'BraA10t42537Z' => 'bra', 'C01p10690' => 'bna', 'C02p03890' => 'bna', 'C02p03900' => 'bna', 'C03p04620' => 'bna', 'C04p19870' => 'bna', 'C04p59670' => 'bna', 'C05p02460' => 'bna', 'C05p02470' => 'bna', 'C08p00980' => 'bna', 'C08p00990' => 'bna', 'C08p51030' => 'bna', 'C08p52360' => 'bna', 'C09p09120' => 'bna', 'CAN.G19.15' => 'can', 'CAN.G251.10' => 'can', 'CAN.G251.9' => 'can', 'CAN.G398.24' => 'can', 'CAN.G410.32' => 'can', 'CAN.G881.2' => 'can', 'CANSAT01G3025' => 'cansat', 'CANSAT78G1211' => 'cansat', 'CANSAT78G1218' => 'cansat', 'CANSAT78G1521' => 'cansat', 'CANSAT78G1670' => 'cansat', 'CARHR003600' => 'chi', 'CARHR003610' => 'chi', 'CARHR006290' => 'chi', 'CARHR006430' => 'chi', 'CARHR124110' => 'chi', 'CARHR203870' => 'chi', 'CARHR203880' => 'chi', 'CARHR203890' => 'chi', 'CARHR276880' => 'chi', 'Carub.0001s0346' => 'cru', 'Carub.0001s0347' => 'cru', 'Carub.0001s0607' => 'cru', 'Carub.0003s2768' => 'cru', 'Carub.0003s2769' => 'cru', 'Carub.0004s1178' => 'cru', 'Carub.0006s0806' => 'cru', 'Carub.0006s0807' => 'cru', 'Carub.0006s0808' => 'cru', 'Carub.0008s0501' => 'cru', 'Carub.0008s2379' => 'cru', 'Ca_08655_v3' => 'car', 'Ca_08922_v3' => 'car', 'Ca_08923_v3' => 'car', 'Ca_09119_v3' => 'car', 'Ca_09703_v3' => 'car', 'Ca_09705_v3' => 'car', 'Ca_09835_v3' => 'car', 'Ca_26403_v3' => 'car', 'Ca_30719_v3' => 'car', 'CBR_g17958' => 'cbr', 'CBR_g40516' => 'cbr', 'Cc00_g05350' => 'ccan', 'Cc01_g18690' => 'ccan', 'Cc03_g04830' => 'ccan', 'Cc03_g04850' => 'ccan', 'CDE02G4469' => 'cde', 'CDE06G0883' => 'cde', 'CDE06G1295' => 'cde', 'CDE06G1390' => 'cde', 'CDE07G0584' => 'cde', 'CDE07G1084' => 'cde', 'CDE08G1259' => 'cde', 'Cfa002341' => 'cfa', 'Cfa024337' => 'cfa', 'Ciclev10004749m.g' => 'ccl', 'Ciclev10006127m.g' => 'ccl', 'Ciclev10019720m.g' => 'ccl', 'Ciclev10022652m.g' => 'ccl', 'CiPaw.01G190400' => 'cil', 'CiPaw.01G190500' => 'cil', 'CiPaw.02G116400' => 'cil', 'CiPaw.02G116500' => 'cil', 'CiPaw.04G183000' => 'cil', 'CiPaw.04G183300' => 'cil', 'ClCG05G004610' => 'cla', 'ClCG05G004620' => 'cla', 'ClCG06G006730' => 'cla', 'ClCG06G006740' => 'cla', 'ClCG11G003690' => 'cla', 'COL.COLO4_08276' => 'col', 'COL.COLO4_08277' => 'col', 'COL.COLO4_15787' => 'col', 'COL.COLO4_15789' => 'col', 'Cpa.g.c44815' => 'cpa', 'Cpa.g.sc52.144' => 'cpa', 'Cpa.g.sc58.46' => 'cpa', 'Cpa.g.sc58.47' => 'cpa', 'Cre08.g360900' => 'cre', 'CsaV3_2G013030' => 'csa', 'CsaV3_2G013050' => 'csa', 'CsaV3_2G015620' => 'csa', 'CsaV3_3G012590' => 'csa', 'CsaV3_3G012600' => 'csa', 'CSS0001641' => 'camsi', 'CSS0008310' => 'camsi', 'CSS0013011' => 'camsi', 'CSS0017147' => 'camsi', 'CSS0022970' => 'camsi', 'CSS0025655' => 'camsi', 'CSS0028665' => 'camsi', 'CSS0029117' => 'camsi', 'CSS0032024' => 'camsi', 'CSS0039681' => 'camsi', 'CSS0046516' => 'camsi', 'CSS0050307' => 'camsi', 'DCAR_005871' => 'dca', 'DCAR_007342' => 'dca', 'DCAR_024228' => 'dca', 'DCAR_027277' => 'dca', 'DCAR_030718' => 'dca', 'Dinv20287' => 'din', 'Dinv22461' => 'din', 'Dinv22464' => 'din', 'Dinv29912' => 'din', 'Dinv29913' => 'din', 'Dinv34580' => 'din', 'Dinv34582' => 'din', 'Dinv44632' => 'din', 'Duzib052G0266' => 'dzi', 'Duzib133G0907' => 'dzi', 'Duzib133G1034' => 'dzi', 'Duzib138G0207' => 'dzi', 'Duzib138G0491' => 'dzi', 'Duzib151G0812' => 'dzi', 'Duzib151G1166' => 'dzi', 'Duzib168G0192' => 'dzi', 'Duzib211G0077' => 'dzi', 'Duzib212G0429' => 'dzi', 'Duzib212G0472' => 'dzi', 'ECA233G2617' => 'eca', 'ECA236G4188' => 'eca', 'ECA240G0936' => 'eca', 'ECA240G1129' => 'eca', 'ECA247G0623' => 'eca', 'EL10Ac5g10451' => 'bvu', 'EL10Ac5g10453' => 'bvu', 'EL10Ac5g10894' => 'bvu', 'Eucgr.H00192' => 'egr', 'Eucgr.H00193' => 'egr', 'Eucgr.H00194' => 'egr', 'Eucgr.J01562' => 'egr', 'Eucgr.K03301' => 'egr', 'FAN02G0632' => 'fan', 'FAN05G5378' => 'fan', 'FAN09G3247' => 'fan', 'FAN12G0435' => 'fan', 'FAN12G2426' => 'fan', 'FAN14G1707' => 'fan', 'FAN14G4725' => 'fan', 'FAN15G2071' => 'fan', 'FAN17G3065' => 'fan', 'FAN19G1376' => 'fan', 'FAN20G0354' => 'fan', 'FAN20G2429' => 'fan', 'FAN20G2658' => 'fan', 'FAN24G2343' => 'fan', 'FAN27G2362' => 'fan', 'FAN28G1765' => 'fan', 'FvH4_1g16020' => 'fve', 'FvH4_2g04890' => 'fve', 'FvH4_2g22270' => 'fve', 'FvH4_4g02630' => 'fve', 'FvH4_4g02640' => 'fve', 'FvH4_6g02650' => 'fve', 'Glyma.02G140600' => 'gma', 'Glyma.03G159900' => 'gma', 'Glyma.05G234800' => 'gma', 'Glyma.07G269600' => 'gma', 'Glyma.08G042300' => 'gma', 'Glyma.10G033500' => 'gma', 'Glyma.10G185200' => 'gma', 'Glyma.17G004300' => 'gma', 'Glyma.19G161900' => 'gma', 'Glyma.20G205100' => 'gma', 'Glyma.20G205200' => 'gma', 'Gohir.A01G139101' => 'ghi', 'Gohir.A02G035600' => 'ghi', 'Gohir.A02G117901' => 'ghi', 'Gohir.A07G210100' => 'ghi', 'Gohir.A07G210200' => 'ghi', 'Gohir.A08G061100' => 'ghi', 'Gohir.A09G223000' => 'ghi', 'Gohir.A09G223100' => 'ghi', 'Gohir.A10G113900' => 'ghi', 'Gohir.A10G114000' => 'ghi', 'Gohir.D02G042300' => 'ghi', 'Gohir.D07G216100' => 'ghi', 'Gohir.D07G216200' => 'ghi', 'Gohir.D08G070400' => 'ghi', 'Gohir.D09G225000' => 'ghi', 'Gohir.D09G225100' => 'ghi', 'Gohir.D10G152300' => 'ghi', 'Gohir.D10G153200' => 'ghi', 'Gohir.D11G133701' => 'ghi', 'Gorai.004G074100' => 'gra', 'Gorai.005G046800' => 'gra', 'Gorai.006G246500' => 'gra', 'Gorai.006G246600' => 'gra', 'Gorai.007G142900' => 'gra', 'Gorai.011G171000' => 'gra', 'Gorai.011G171100' => 'gra', 'Gorai.013G104300' => 'gra', 'Gorai.013G104400' => 'gra', 'GSVIVG01000754001' => 'vvi', 'GSVIVG01000756001' => 'vvi', 'GSVIVG01010903001' => 'vvi', 'GSVIVG01017623001' => 'vvi', 'GSVIVG01018113001' => 'vvi', 'GSVIVG01018116001' => 'vvi', 'GSVIVG01018118001' => 'vvi', 'HanXRQChr03g0076211' => 'han', 'HanXRQChr03g0092431' => 'han', 'HanXRQChr03g0092441' => 'han', 'HanXRQChr03g0092591' => 'han', 'HanXRQChr03g0092671' => 'han', 'HanXRQChr03g0092681' => 'han', 'HanXRQChr03g0092691' => 'han', 'HanXRQChr03g0092701' => 'han', 'HanXRQChr03g0092721' => 'han', 'HanXRQChr03g0092731' => 'han', 'HanXRQChr04g0113681' => 'han', 'HanXRQChr10g0281371' => 'han', 'HanXRQChr11g0337141' => 'han', 'HanXRQChr13g0424521' => 'han', 'HanXRQChr13g0424531' => 'han', 'HanXRQChr13g0424541' => 'han', 'HanXRQChr16g0498221' => 'han', 'Haze_04377' => 'cav', 'Haze_11298' => 'cav', 'Haze_24547' => 'cav', 'Haze_24550' => 'cav', 'Haze_26587' => 'cav', 'Hma1.2p1_0650F.1_g195410' => 'hma', 'Hma1.2p1_0893F.1_g233470' => 'hma', 'HPP92_006508' => 'vpl', 'HPP92_024780' => 'vpl', 'Hund02688' => 'sun', 'Hund09380' => 'sun', 'Hund09381' => 'sun', 'Hund09832' => 'sun', 'Hund09833' => 'sun', 'Hund11351' => 'sun', 'Hund11513' => 'sun', 'Lalb_Chr06g0162591' => 'lal', 'Lalb_Chr06g0162601' => 'lal', 'Lalb_Chr06g0169321' => 'lal', 'Lalb_Chr09g0330951' => 'lal', 'Lalb_Chr16g0387631' => 'lal', 'Lalb_Chr21g0306241' => 'lal', 'Lalb_Chr25g0290051' => 'lal', 'Lalb_Chr25g0290061' => 'lal', 'Lalb_Chr25g0290071' => 'lal', 'Lj1g0003876' => 'lja', 'Lj1P1207T36' => 'lonja', 'Lj2C1156G12' => 'lonja', 'Lj3A793G39' => 'lonja', 'Lj3C580G2' => 'lonja', 'Lj3C780G2' => 'lonja', 'Lj3C780T4' => 'lonja', 'Lj3C793G9' => 'lonja', 'Lj4g0012960' => 'lja', 'Lj5g0021252' => 'lja', 'Lj5g0021484' => 'lja', 'Lj5g0024528' => 'lja', 'Lj6A399T12' => 'lonja', 'Lj6A656G65' => 'lonja', 'Lsat_1_v5_gn_3_125500' => 'lsa', 'Lsat_1_v5_gn_3_125540' => 'lsa', 'Lsat_1_v5_gn_5_72701' => 'lsa', 'Lsat_1_v5_gn_8_91560' => 'lsa', 'Lsat_1_v5_gn_9_9640' => 'lsa', 'Manes.01G200600' => 'mes', 'Manes.01G200700' => 'mes', 'Manes.03G168900' => 'mes', 'Manes.03G169000' => 'mes', 'Manes.05G085801' => 'mes', 'Manes.05G086200' => 'mes', 'Manes.15G036700' => 'mes', 'Manes.15G036900' => 'mes', 'Mapoly0004s0172' => 'mpo', 'Mapoly0023s0001' => 'mpo', 'Mapoly0142s0012' => 'mpo', 'MBI01_g32854_MAGBIO' => 'mbi', 'MBI11_g24427_MAGBIO' => 'mbi', 'MBI11_g47319_MAGBIO' => 'mbi', 'MCO01G433' => 'mco', 'MD00G1187800' => 'mdo', 'MD04G1226500' => 'mdo', 'MD05G1203900' => 'mdo', 'MD10G1191100' => 'mdo', 'MD12G1243500' => 'mdo', 'MD13G1207000' => 'mdo', 'MD13G1207100' => 'mdo', 'MD16G1208600' => 'mdo', 'Medtr1g050352' => 'mtr', 'Medtr1g070385' => 'mtr', 'Medtr1g070450' => 'mtr', 'Medtr1g075200' => 'mtr', 'Medtr1g075250' => 'mtr', 'Medtr1g075260' => 'mtr', 'Medtr1g475250' => 'mtr', 'Medtr4g075450' => 'mtr', 'Medtr7g096300' => 'mtr', 'Medtr8g105110' => 'mtr', 'MELO3C006470.2' => 'cme', 'MELO3C006471.2' => 'cme', 'MELO3C020772.2' => 'cme', 'MELO3C026780.2' => 'cme', 'MELO3C026781.2' => 'cme', 'Migut.D00390' => 'egut', 'Migut.G00435' => 'egut', 'Migut.G00436' => 'egut', 'Migut.G00718' => 'egut', 'MSTRG.21891' => 'ama', 'MSTRG.26910' => 'ama', 'MSTRG.4099' => 'ama', 'MSTRG.9925' => 'ama', 'Nitab4.5_0000165g0010' => 'nta', 'Nitab4.5_0000209g0180' => 'nta', 'Nitab4.5_0000244g0440' => 'nta', 'Nitab4.5_0000525g0220' => 'nta', 'Nitab4.5_0001597g0020' => 'nta', 'Nitab4.5_0001878g0040' => 'nta', 'Nitab4.5_0001878g0060' => 'nta', 'Nitab4.5_0002838g0100' => 'nta', 'Nitab4.5_0002838g0120' => 'nta', 'Nitab4.5_0004798g0030' => 'nta', 'Nitab4.5_0005420g0010' => 'nta', 'Nitab4.5_0005507g0010' => 'nta', 'Nitab4.5_0005574g0020' => 'nta', 'Nitab4.5_0005838g0010' => 'nta', 'Nitab4.5_0010580g0020' => 'nta', 'Nn1g02599' => 'nnu', 'Nn1g02608' => 'nnu', 'Nn3g17742' => 'nnu', 'Nn3g19534' => 'nnu', 'Nn3g19535' => 'nnu', 'Oeu008790.1' => 'oeu', 'Oeu008792.1' => 'oeu', 'Oeu032590.1' => 'oeu', 'Oeu035349.1' => 'oeu', 'Oeu049791.1' => 'oeu', 'Os01g0774500' => 'osa', 'Os03g0628800' => 'osa', 'Os03g0798600' => 'osa', 'Os05g0508800' => 'osa', 'Peaxi162Scf00036g02018' => 'pax', 'Peaxi162Scf00578g00032' => 'pax', 'Peaxi162Scf00578g00317' => 'pax', 'Peaxi162Scf00785g00114' => 'pax', 'Peaxi162Scf00813g00119' => 'pax', 'Peaxi162Scf00906g00227' => 'pax', 'PGR004G0875' => 'pgr', 'PGR004G2424' => 'pgr', 'PGR031G1239' => 'pgr', 'PGR031G2474' => 'pgr', 'PGR044G0423' => 'pgr', 'PGSC0003DMG400001128' => 'stu', 'PGSC0003DMG400007336' => 'stu', 'PGSC0003DMG400016318' => 'stu', 'PGSC0003DMG400016319' => 'stu', 'PGSC0003DMG400018074' => 'stu', 'Phvul.001G157700' => 'pvu', 'Phvul.002G148550' => 'pvu', 'Phvul.002G320200' => 'pvu', 'Phvul.003G089200' => 'pvu', 'Phvul.007G126000' => 'pvu', 'Phvul.007G126100' => 'pvu', 'Phvul.007G178000' => 'pvu', 'Phvul.007G178200' => 'pvu', 'Potri.002G043000' => 'ptr', 'Potri.002G043200' => 'ptr', 'Potri.003G123750' => 'ptr', 'Potri.005G055401' => 'ptr', 'Potri.005G219700' => 'ptr', 'Potri.005G220000' => 'ptr', 'Potri.008G161901' => 'ptr', 'Potri.008G162000' => 'ptr', 'Potri.008G162400' => 'ptr', 'Potri.010G076900' => 'ptr', 'Pp3c12_9180' => 'ppa', 'Pp3c13_19770' => 'ppa', 'Pp3c14_22950' => 'ppa', 'Pp3c16_12160' => 'ppa', 'Pp3c27_7820' => 'ppa', 'Pp3c2_3490' => 'ppa', 'Pp3c3_23700' => 'ppa', 'Pp3c3_36520' => 'ppa', 'Pp3c4_15250' => 'ppa', 'PRCOL_00007002' => 'pco', 'Prupe.1G030600' => 'ppe', 'Prupe.1G030700' => 'ppe', 'Prupe.6G345200' => 'ppe', 'Prupe.8G230300' => 'ppe', 'Prupe.8G230500' => 'ppe', 'Psat3g059600' => 'psa', 'Psat5g200920' => 'psa', 'Psat6g056440' => 'psa', 'Psat6g057360' => 'psa', 'Psat6g134120' => 'psa', 'Psat6g134160' => 'psa', 'Psat7g008640' => 'psa', 'Psat7g185240' => 'psa', 'PSO017G1330' => 'pso', 'PSO063G6097' => 'pso', 'PSO170G0835' => 'pso', 'PSO170G2499' => 'pso', 'PSO210G5058' => 'pso', 'PSO210G6154' => 'pso', 'PSO585G0031' => 'pso', 'PSO832G0264' => 'pso', 'PSO832G4288' => 'pso', 'QL03p027355' => 'qlo', 'QL03p027430' => 'qlo', 'QL04p081380' => 'qlo', 'QL06p015642' => 'qlo', 'QL06p015650' => 'qlo', 'QL06p015686' => 'qlo', 'QL12p042927' => 'qlo', 'QL93p1863_0035' => 'qlo', 'RcHm_v2.0_Chr3g0450581' => 'rch', 'RcHm_v2.0_Chr4g0390371' => 'rch', 'RcHm_v2.0_Chr4g0390381' => 'rch', 'RcHm_v2.0_Chr4g0390491' => 'rch', 'RcHm_v2.0_Chr4g0390501' => 'rch', 'RcHm_v2.0_Chr6g0289231' => 'rch', 'Rhsim04G0190400' => 'rsi', 'Rhsim04G0190500' => 'rsi', 'Rhsim04G0190600' => 'rsi', 'Rhsim13G0031400' => 'rsi', 'Rhsim13G0165600' => 'rsi', 'RhsimUnG0114600' => 'rsi', 'RhsimUnG0114700' => 'rsi', 'Sabra02G0034800' => 'sbr', 'Sabra02G0035100' => 'sbr', 'Sabra05G0168600' => 'sbr', 'Sabra05G0168800' => 'sbr', 'Sabra08G0123700' => 'sbr', 'Sabra10G0031900' => 'sbr', 'Sabra13G0039000' => 'sbr', 'SalBow2G0782' => 'sbo', 'SalBow2G1403' => 'sbo', 'SalBow4G0074' => 'sbo', 'SalBow4G2635' => 'sbo', 'SalBow5G3010' => 'sbo', 'Sc05g0000870' => 'sci', 'Sc05g0000890' => 'sci', 'Sc13g0005000' => 'sci', 'Sc13g0005030' => 'sci', 'Sc19g0003790' => 'sci', 'Sc19g0003800' => 'sci', 'Sed0003467' => 'sed', 'Sed0009355' => 'sed', 'Sed0009894' => 'sed', 'Sed0011972' => 'sed', 'Sed0021483' => 'sed', 'Sed0021750' => 'sed', 'Sed0026279' => 'sed', 'SEGI_05312' => 'sgi', 'SEGI_10112' => 'sgi', 'SEGI_15835' => 'sgi', 'SEGI_30386' => 'sgi', 'SEGI_34122' => 'sgi', 'SEGI_35063' => 'sgi', 'SGA_v2.0_scaffold101G29794' => 'sas', 'SGA_v2.0_scaffold1G00573' => 'sas', 'SGA_v2.0_scaffold79G25637' => 'sas', 'SGA_v2.0_scaffold88G27283' => 'sas', 'SGA_v2.0_scaffold88G27285' => 'sas', 'SGA_v2.0_scaffold88G27331' => 'sas', 'SHI09937' => 'shi', 'SMO119G0302' => 'smo', 'SMO137G0231' => 'smo', 'SMO367G1151' => 'smo', 'Solyc02g082000.3' => 'sly', 'Solyc06g031670.3' => 'sly', 'Solyc06g053810.3' => 'sly', 'Solyc07g025457.1' => 'sly', 'Solyc08g059740.1' => 'sly', 'Solyc08g059750.3' => 'sly', 'Solyc09g083370.3' => 'sly', 'Solyc12g038950.3' => 'sly', 'Sopen02g026630' => 'spe', 'Sopen06g018930' => 'spe', 'Sopen06g018940' => 'spe', 'Sopen08g009460' => 'spe', 'Sopen09g032290' => 'spe', 'Sp1g03080' => 'spa', 'Sp1g03090' => 'spa', 'Sp1g05480' => 'spa', 'Sp2g07860' => 'spa', 'Sp2g08430' => 'spa', 'Sp2g08440' => 'spa', 'Sp2g26200' => 'spa', 'Sp4g13170' => 'spa', 'Sp6g33840' => 'spa', 'SpUn1204_0010' => 'spa', 'TAR365G0908' => 'tar', 'TAR381G1270' => 'tar', 'TAR381G1651' => 'tar', 'TAR625G1131' => 'tar', 'TAR633G0962' => 'tar', 'TAR633G1729' => 'tar', 'TAR633G1864' => 'tar', 'TAR636G0221' => 'tar', 'TAR636G0314' => 'tar', 'TAR636G3202' => 'tar', 'THA.LOC104800805' => 'tha', 'THA.LOC104801096' => 'tha', 'THA.LOC104801555' => 'tha', 'THA.LOC104808491' => 'tha', 'THA.LOC104808595' => 'tha', 'THA.LOC104815985' => 'tha', 'THA.LOC104822250' => 'tha', 'THA.LOC104826071' => 'tha', 'Thecc.01G265200' => 'tca', 'Thecc.01G265300' => 'tca', 'Thecc.01G265700' => 'tca', 'Thecc.03G109100' => 'tca', 'Thecc.04G245900' => 'tca', 'Thecc.04G246000' => 'tca', 'Thhalv10003334m.g' => 'esa', 'Thhalv10005508m.g' => 'esa', 'Thhalv10005643m.g' => 'esa', 'Thhalv10007316m.g' => 'esa', 'Thhalv10009006m.g' => 'esa', 'Thhalv10009309m.g' => 'esa', 'Thhalv10014917m.g' => 'esa', 'Thhalv10014919m.g' => 'esa', 'Thhalv10015393m.g' => 'esa', 'Thhalv10016515m.g' => 'esa', 'Thhalv10029242m.g' => 'esa', 'TPR.G16654' => 'tpr', 'TPR.G20589' => 'tpr', 'TPR.G23029' => 'tpr', 'TPR.G27731' => 'tpr', 'TPR.G28889' => 'tpr', 'TPR.G28899' => 'tpr', 'TPR.G30846' => 'tpr', 'TPR.G5452' => 'tpr', 'TPR.G5713' => 'tpr', 'TPR.G9046' => 'tpr', 'TPR.G9061' => 'tpr', 'TWI09G1075' => 'twi', 'TWI12G0806' => 'twi', 'TWI18G0108' => 'twi', 'TWI53G1361' => 'twi', 'TWI73G0185' => 'twi', 'TWI73G0427' => 'twi', 'unitig_37.g12001' => 'ugi', 'unitig_747.g21660' => 'ugi', 'unitig_748.g7232' => 'ugi', 'unitig_748.g7315' => 'ugi', 'unitig_85.g27262' => 'ugi', 'unitig_92.g28220' => 'ugi', 'vmacro02632' => 'vma', 'vmacro08410' => 'vma', 'vmacro08411' => 'vma', 'vmacro15407' => 'vma', 'VMungo0251G3619' => 'vmu', 'VMungo0720G1204' => 'vmu', 'VMungo0720G1918' => 'vmu', 'VMungo0720G2387' => 'vmu', 'VMungo0720G2961' => 'vmu', 'VMungo1215G2154' => 'vmu', 'VMungo1383G2411' => 'vmu', 'Zm00001eb051130' => 'zma', 'Zm00001eb116830' => 'zma', 'Zm00001eb116850' => 'zma', 'Zm00001eb151740' => 'zma', 'Zm00001eb292360' => 'zma', 'Zm00001eb301640' => 'zma' ) $gf_id = 'HOM05D000856' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000856' ) $data_identifier = 'HOM05D000856' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 13, 'ath' => (int) 10, 'atr' => (int) 1, 'acertr' => (int) 8, 'cqu' => (int) 6, 'bca' => (int) 21, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 11, 'car' => (int) 9, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 8, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 5, 'fan' => (int) 16, 'fve' => (int) 6, 'gma' => (int) 11, 'ghi' => (int) 19, 'gra' => (int) 9, 'vvi' => (int) 7, 'han' => (int) 17, 'cav' => (int) 5, 'hma' => (int) 2, 'vpl' => (int) 2, 'sun' => (int) 7, 'lal' => (int) 9, 'lja' => (int) 5, 'lonja' => (int) 9, 'lsa' => (int) 5, 'mes' => (int) 8, 'mpo' => (int) 3, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 10, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 15, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 9, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 9, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 6, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 5, 'spa' => (int) 10, 'tar' => (int) 10, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 11, 'tpr' => (int) 11, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 4, 'vmu' => (int) 7, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb301640' $species_info = array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ) $local_species = 'mdo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000856', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p00010' => 'bna', 'A03p04160' => 'bna', 'A03p17160' => 'bna', 'A04p23370' => 'bna', 'A05p14860' => 'bna', 'A08p37020' => 'bna', 'A09p08050' => 'bna', 'A09p66800' => 'bna', 'A09p67940' => 'bna', 'A10p02680' => 'bna', 'A10p05320' => 'bna', 'Aa31LG1G20560' => 'aar', 'Aa31LG1G20610' => 'aar', 'Aa31LG1G7810' => 'aar', 'Aa31LG5G3590' => 'aar', 'Aa31LG5G6140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3819' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4683' => 'aag', 'Actinidia04480' => 'ach', 'Actinidia05466' => 'ach', 'Actinidia08445' => 'ach', 'Actinidia21170' => 'ach', 'Actinidia24812' => 'ach', 'Actinidia24951' => 'ach', 'Actinidia40088' => 'ach', 'Ah.02g111660' => 'amhyb', 'Ah.11g048900' => 'amhyb', 'Ah.11g049910' => 'amhyb', 'AL1G13870' => 'aly', 'AL1G13880' => 'aly', 'AL1G16760' => 'aly', 'AL390U10020' => 'aly', 'AL4G25520' => 'aly', 'AL6G19890' => 'aly', 'AL6G19900' => 'aly', 'AL6G19910' => 'aly', 'AL8G40100' => 'aly', 'Aqoxy2G03562' => 'aox', 'Aqoxy5G00316' => 'aox', 'Aqoxy5G00926' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1628KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1H403S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2FU6SJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.882I6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8YRY2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YN1SN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AF70II' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZA8L1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F916KL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHRD8H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KTZ8QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S22EMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8M29T' => 'arhy', 'AT1G04270' => 'ath', 'AT1G04280' => 'ath', 'AT1G06750' => 'ath', 'AT1G33850' => 'ath', 'AT2G30630' => 'ath', 'AT5G09490' => 'ath', 'AT5G09500' => 'ath', 'AT5G09510' => 'ath', 'AT5G43640' => 'ath', 'AT5G63070' => 'ath', 'ATR0605G315' => 'atr', 'Atru.chr11.175' => 'acertr', 'Atru.chr11.653' => 'acertr', 'Atru.chr3.1616' => 'acertr', 'Atru.chr4.2230' => 'acertr', 'Atru.chr4.2232' => 'acertr', 'Atru.chr5.1598' => 'acertr', 'Atru.chr5.1600' => 'acertr', 'Atru.chr5.2188' => 'acertr', 'AUR62008326' => 'cqu', 'AUR62011922' => 'cqu', 'AUR62011924' => 'cqu', 'AUR62021771' => 'cqu', 'AUR62032237' => 'cqu', 'AUR62032240' => 'cqu', 'BcaB01g05572' => 'bca', 'BcaB02g10337' => 'bca', 'BcaB04g19944' => 'bca', 'BcaB05g21548' => 'bca', 'BcaB05g21549' => 'bca', 'BcaB05g23227' => 'bca', 'BcaB06g26256' => 'bca', 'BcaB06g26257' => 'bca', 'BcaB06g28379' => 'bca', 'BcaC02g11159' => 'bca', 'BcaC03g13258' => 'bca', 'BcaC03g13259' => 'bca', 'BcaC05g24456' => 'bca', 'BcaC05g24457' => 'bca', 'BcaC07g36922' => 'bca', 'BcaC07g36923' => 'bca', 'BcaC07g42050' => 'bca', 'BcaC07g42176' => 'bca', 'BcaC07g42195' => 'bca', 'BcaC07g42196' => 'bca', 'BcaNung06674' => 'bca', 'BolC2t06351H' => 'bol', 'BolC2t06352H' => 'bol', 'BolC3t12993H' => 'bol', 'BolC4t23525H' => 'bol', 'BolC4t27475H' => 'bol', 'BolC5t29025H' => 'bol', 'BolC5t29026H' => 'bol', 'BolC8t46898H' => 'bol', 'BolC8t46899H' => 'bol', 'BolC8t52630H' => 'bol', 'BolC8t52765H' => 'bol', 'BolC9t53824H' => 'bol', 'BraA03t09760Z' => 'bra', 'BraA03t10990Z' => 'bra', 'BraA05t20413Z' => 'bra', 'BraA08t35602Z' => 'bra', 'BraA09t36458Z' => 'bra', 'BraA09t42018Z' => 'bra', 'BraA09t42129Z' => 'bra', 'BraA10t42536Z' => 'bra', 'BraA10t42537Z' => 'bra', 'C01p10690' => 'bna', 'C02p03890' => 'bna', 'C02p03900' => 'bna', 'C03p04620' => 'bna', 'C04p19870' => 'bna', 'C04p59670' => 'bna', 'C05p02460' => 'bna', 'C05p02470' => 'bna', 'C08p00980' => 'bna', 'C08p00990' => 'bna', 'C08p51030' => 'bna', 'C08p52360' => 'bna', 'C09p09120' => 'bna', 'CAN.G19.15' => 'can', 'CAN.G251.10' => 'can', 'CAN.G251.9' => 'can', 'CAN.G398.24' => 'can', 'CAN.G410.32' => 'can', 'CAN.G881.2' => 'can', 'CANSAT01G3025' => 'cansat', 'CANSAT78G1211' => 'cansat', 'CANSAT78G1218' => 'cansat', 'CANSAT78G1521' => 'cansat', 'CANSAT78G1670' => 'cansat', 'CARHR003600' => 'chi', 'CARHR003610' => 'chi', 'CARHR006290' => 'chi', 'CARHR006430' => 'chi', 'CARHR124110' => 'chi', 'CARHR203870' => 'chi', 'CARHR203880' => 'chi', 'CARHR203890' => 'chi', 'CARHR276880' => 'chi', 'Carub.0001s0346' => 'cru', 'Carub.0001s0347' => 'cru', 'Carub.0001s0607' => 'cru', 'Carub.0003s2768' => 'cru', 'Carub.0003s2769' => 'cru', 'Carub.0004s1178' => 'cru', 'Carub.0006s0806' => 'cru', 'Carub.0006s0807' => 'cru', 'Carub.0006s0808' => 'cru', 'Carub.0008s0501' => 'cru', 'Carub.0008s2379' => 'cru', 'Ca_08655_v3' => 'car', 'Ca_08922_v3' => 'car', 'Ca_08923_v3' => 'car', 'Ca_09119_v3' => 'car', 'Ca_09703_v3' => 'car', 'Ca_09705_v3' => 'car', 'Ca_09835_v3' => 'car', 'Ca_26403_v3' => 'car', 'Ca_30719_v3' => 'car', 'CBR_g17958' => 'cbr', 'CBR_g40516' => 'cbr', 'Cc00_g05350' => 'ccan', 'Cc01_g18690' => 'ccan', 'Cc03_g04830' => 'ccan', 'Cc03_g04850' => 'ccan', 'CDE02G4469' => 'cde', 'CDE06G0883' => 'cde', 'CDE06G1295' => 'cde', 'CDE06G1390' => 'cde', 'CDE07G0584' => 'cde', 'CDE07G1084' => 'cde', 'CDE08G1259' => 'cde', 'Cfa002341' => 'cfa', 'Cfa024337' => 'cfa', 'Ciclev10004749m.g' => 'ccl', 'Ciclev10006127m.g' => 'ccl', 'Ciclev10019720m.g' => 'ccl', 'Ciclev10022652m.g' => 'ccl', 'CiPaw.01G190400' => 'cil', 'CiPaw.01G190500' => 'cil', 'CiPaw.02G116400' => 'cil', 'CiPaw.02G116500' => 'cil', 'CiPaw.04G183000' => 'cil', 'CiPaw.04G183300' => 'cil', 'ClCG05G004610' => 'cla', 'ClCG05G004620' => 'cla', 'ClCG06G006730' => 'cla', 'ClCG06G006740' => 'cla', 'ClCG11G003690' => 'cla', 'COL.COLO4_08276' => 'col', 'COL.COLO4_08277' => 'col', 'COL.COLO4_15787' => 'col', 'COL.COLO4_15789' => 'col', 'Cpa.g.c44815' => 'cpa', 'Cpa.g.sc52.144' => 'cpa', 'Cpa.g.sc58.46' => 'cpa', 'Cpa.g.sc58.47' => 'cpa', 'Cre08.g360900' => 'cre', 'CsaV3_2G013030' => 'csa', 'CsaV3_2G013050' => 'csa', 'CsaV3_2G015620' => 'csa', 'CsaV3_3G012590' => 'csa', 'CsaV3_3G012600' => 'csa', 'CSS0001641' => 'camsi', 'CSS0008310' => 'camsi', 'CSS0013011' => 'camsi', 'CSS0017147' => 'camsi', 'CSS0022970' => 'camsi', 'CSS0025655' => 'camsi', 'CSS0028665' => 'camsi', 'CSS0029117' => 'camsi', 'CSS0032024' => 'camsi', 'CSS0039681' => 'camsi', 'CSS0046516' => 'camsi', 'CSS0050307' => 'camsi', 'DCAR_005871' => 'dca', 'DCAR_007342' => 'dca', 'DCAR_024228' => 'dca', 'DCAR_027277' => 'dca', 'DCAR_030718' => 'dca', 'Dinv20287' => 'din', 'Dinv22461' => 'din', 'Dinv22464' => 'din', 'Dinv29912' => 'din', 'Dinv29913' => 'din', 'Dinv34580' => 'din', 'Dinv34582' => 'din', 'Dinv44632' => 'din', 'Duzib052G0266' => 'dzi', 'Duzib133G0907' => 'dzi', 'Duzib133G1034' => 'dzi', 'Duzib138G0207' => 'dzi', 'Duzib138G0491' => 'dzi', 'Duzib151G0812' => 'dzi', 'Duzib151G1166' => 'dzi', 'Duzib168G0192' => 'dzi', 'Duzib211G0077' => 'dzi', 'Duzib212G0429' => 'dzi', 'Duzib212G0472' => 'dzi', 'ECA233G2617' => 'eca', 'ECA236G4188' => 'eca', 'ECA240G0936' => 'eca', 'ECA240G1129' => 'eca', 'ECA247G0623' => 'eca', 'EL10Ac5g10451' => 'bvu', 'EL10Ac5g10453' => 'bvu', 'EL10Ac5g10894' => 'bvu', 'Eucgr.H00192' => 'egr', 'Eucgr.H00193' => 'egr', 'Eucgr.H00194' => 'egr', 'Eucgr.J01562' => 'egr', 'Eucgr.K03301' => 'egr', 'FAN02G0632' => 'fan', 'FAN05G5378' => 'fan', 'FAN09G3247' => 'fan', 'FAN12G0435' => 'fan', 'FAN12G2426' => 'fan', 'FAN14G1707' => 'fan', 'FAN14G4725' => 'fan', 'FAN15G2071' => 'fan', 'FAN17G3065' => 'fan', 'FAN19G1376' => 'fan', 'FAN20G0354' => 'fan', 'FAN20G2429' => 'fan', 'FAN20G2658' => 'fan', 'FAN24G2343' => 'fan', 'FAN27G2362' => 'fan', 'FAN28G1765' => 'fan', 'FvH4_1g16020' => 'fve', 'FvH4_2g04890' => 'fve', 'FvH4_2g22270' => 'fve', 'FvH4_4g02630' => 'fve', 'FvH4_4g02640' => 'fve', 'FvH4_6g02650' => 'fve', 'Glyma.02G140600' => 'gma', 'Glyma.03G159900' => 'gma', 'Glyma.05G234800' => 'gma', 'Glyma.07G269600' => 'gma', 'Glyma.08G042300' => 'gma', 'Glyma.10G033500' => 'gma', 'Glyma.10G185200' => 'gma', 'Glyma.17G004300' => 'gma', 'Glyma.19G161900' => 'gma', 'Glyma.20G205100' => 'gma', 'Glyma.20G205200' => 'gma', 'Gohir.A01G139101' => 'ghi', 'Gohir.A02G035600' => 'ghi', 'Gohir.A02G117901' => 'ghi', 'Gohir.A07G210100' => 'ghi', 'Gohir.A07G210200' => 'ghi', 'Gohir.A08G061100' => 'ghi', 'Gohir.A09G223000' => 'ghi', 'Gohir.A09G223100' => 'ghi', 'Gohir.A10G113900' => 'ghi', 'Gohir.A10G114000' => 'ghi', 'Gohir.D02G042300' => 'ghi', 'Gohir.D07G216100' => 'ghi', 'Gohir.D07G216200' => 'ghi', 'Gohir.D08G070400' => 'ghi', 'Gohir.D09G225000' => 'ghi', 'Gohir.D09G225100' => 'ghi', 'Gohir.D10G152300' => 'ghi', 'Gohir.D10G153200' => 'ghi', 'Gohir.D11G133701' => 'ghi', 'Gorai.004G074100' => 'gra', 'Gorai.005G046800' => 'gra', 'Gorai.006G246500' => 'gra', 'Gorai.006G246600' => 'gra', 'Gorai.007G142900' => 'gra', 'Gorai.011G171000' => 'gra', 'Gorai.011G171100' => 'gra', 'Gorai.013G104300' => 'gra', 'Gorai.013G104400' => 'gra', 'GSVIVG01000754001' => 'vvi', 'GSVIVG01000756001' => 'vvi', 'GSVIVG01010903001' => 'vvi', 'GSVIVG01017623001' => 'vvi', 'GSVIVG01018113001' => 'vvi', 'GSVIVG01018116001' => 'vvi', 'GSVIVG01018118001' => 'vvi', 'HanXRQChr03g0076211' => 'han', 'HanXRQChr03g0092431' => 'han', 'HanXRQChr03g0092441' => 'han', 'HanXRQChr03g0092591' => 'han', 'HanXRQChr03g0092671' => 'han', 'HanXRQChr03g0092681' => 'han', 'HanXRQChr03g0092691' => 'han', 'HanXRQChr03g0092701' => 'han', 'HanXRQChr03g0092721' => 'han', 'HanXRQChr03g0092731' => 'han', 'HanXRQChr04g0113681' => 'han', 'HanXRQChr10g0281371' => 'han', 'HanXRQChr11g0337141' => 'han', 'HanXRQChr13g0424521' => 'han', 'HanXRQChr13g0424531' => 'han', 'HanXRQChr13g0424541' => 'han', 'HanXRQChr16g0498221' => 'han', 'Haze_04377' => 'cav', 'Haze_11298' => 'cav', 'Haze_24547' => 'cav', 'Haze_24550' => 'cav', 'Haze_26587' => 'cav', 'Hma1.2p1_0650F.1_g195410' => 'hma', 'Hma1.2p1_0893F.1_g233470' => 'hma', 'HPP92_006508' => 'vpl', 'HPP92_024780' => 'vpl', 'Hund02688' => 'sun', 'Hund09380' => 'sun', 'Hund09381' => 'sun', 'Hund09832' => 'sun', 'Hund09833' => 'sun', 'Hund11351' => 'sun', 'Hund11513' => 'sun', 'Lalb_Chr06g0162591' => 'lal', 'Lalb_Chr06g0162601' => 'lal', 'Lalb_Chr06g0169321' => 'lal', 'Lalb_Chr09g0330951' => 'lal', 'Lalb_Chr16g0387631' => 'lal', 'Lalb_Chr21g0306241' => 'lal', 'Lalb_Chr25g0290051' => 'lal', 'Lalb_Chr25g0290061' => 'lal', 'Lalb_Chr25g0290071' => 'lal', 'Lj1g0003876' => 'lja', 'Lj1P1207T36' => 'lonja', 'Lj2C1156G12' => 'lonja', 'Lj3A793G39' => 'lonja', 'Lj3C580G2' => 'lonja', 'Lj3C780G2' => 'lonja', 'Lj3C780T4' => 'lonja', 'Lj3C793G9' => 'lonja', 'Lj4g0012960' => 'lja', 'Lj5g0021252' => 'lja', 'Lj5g0021484' => 'lja', 'Lj5g0024528' => 'lja', 'Lj6A399T12' => 'lonja', 'Lj6A656G65' => 'lonja', 'Lsat_1_v5_gn_3_125500' => 'lsa', 'Lsat_1_v5_gn_3_125540' => 'lsa', 'Lsat_1_v5_gn_5_72701' => 'lsa', 'Lsat_1_v5_gn_8_91560' => 'lsa', 'Lsat_1_v5_gn_9_9640' => 'lsa', 'Manes.01G200600' => 'mes', 'Manes.01G200700' => 'mes', 'Manes.03G168900' => 'mes', 'Manes.03G169000' => 'mes', 'Manes.05G085801' => 'mes', 'Manes.05G086200' => 'mes', 'Manes.15G036700' => 'mes', 'Manes.15G036900' => 'mes', 'Mapoly0004s0172' => 'mpo', 'Mapoly0023s0001' => 'mpo', 'Mapoly0142s0012' => 'mpo', 'MBI01_g32854_MAGBIO' => 'mbi', 'MBI11_g24427_MAGBIO' => 'mbi', 'MBI11_g47319_MAGBIO' => 'mbi', 'MCO01G433' => 'mco', 'MD00G1187800' => 'mdo', 'MD04G1226500' => 'mdo', 'MD05G1203900' => 'mdo', 'MD10G1191100' => 'mdo', 'MD12G1243500' => 'mdo', 'MD13G1207000' => 'mdo', 'MD13G1207100' => 'mdo', 'MD16G1208600' => 'mdo', 'Medtr1g050352' => 'mtr', 'Medtr1g070385' => 'mtr', 'Medtr1g070450' => 'mtr', 'Medtr1g075200' => 'mtr', 'Medtr1g075250' => 'mtr', 'Medtr1g075260' => 'mtr', 'Medtr1g475250' => 'mtr', 'Medtr4g075450' => 'mtr', 'Medtr7g096300' => 'mtr', 'Medtr8g105110' => 'mtr', 'MELO3C006470.2' => 'cme', 'MELO3C006471.2' => 'cme', 'MELO3C020772.2' => 'cme', 'MELO3C026780.2' => 'cme', 'MELO3C026781.2' => 'cme', 'Migut.D00390' => 'egut', 'Migut.G00435' => 'egut', 'Migut.G00436' => 'egut', 'Migut.G00718' => 'egut', 'MSTRG.21891' => 'ama', 'MSTRG.26910' => 'ama', 'MSTRG.4099' => 'ama', 'MSTRG.9925' => 'ama', 'Nitab4.5_0000165g0010' => 'nta', 'Nitab4.5_0000209g0180' => 'nta', 'Nitab4.5_0000244g0440' => 'nta', 'Nitab4.5_0000525g0220' => 'nta', 'Nitab4.5_0001597g0020' => 'nta', 'Nitab4.5_0001878g0040' => 'nta', 'Nitab4.5_0001878g0060' => 'nta', 'Nitab4.5_0002838g0100' => 'nta', 'Nitab4.5_0002838g0120' => 'nta', 'Nitab4.5_0004798g0030' => 'nta', 'Nitab4.5_0005420g0010' => 'nta', 'Nitab4.5_0005507g0010' => 'nta', 'Nitab4.5_0005574g0020' => 'nta', 'Nitab4.5_0005838g0010' => 'nta', 'Nitab4.5_0010580g0020' => 'nta', 'Nn1g02599' => 'nnu', 'Nn1g02608' => 'nnu', 'Nn3g17742' => 'nnu', 'Nn3g19534' => 'nnu', 'Nn3g19535' => 'nnu', 'Oeu008790.1' => 'oeu', 'Oeu008792.1' => 'oeu', 'Oeu032590.1' => 'oeu', 'Oeu035349.1' => 'oeu', 'Oeu049791.1' => 'oeu', 'Os01g0774500' => 'osa', 'Os03g0628800' => 'osa', 'Os03g0798600' => 'osa', 'Os05g0508800' => 'osa', 'Peaxi162Scf00036g02018' => 'pax', 'Peaxi162Scf00578g00032' => 'pax', 'Peaxi162Scf00578g00317' => 'pax', 'Peaxi162Scf00785g00114' => 'pax', 'Peaxi162Scf00813g00119' => 'pax', 'Peaxi162Scf00906g00227' => 'pax', 'PGR004G0875' => 'pgr', 'PGR004G2424' => 'pgr', 'PGR031G1239' => 'pgr', 'PGR031G2474' => 'pgr', 'PGR044G0423' => 'pgr', 'PGSC0003DMG400001128' => 'stu', 'PGSC0003DMG400007336' => 'stu', 'PGSC0003DMG400016318' => 'stu', 'PGSC0003DMG400016319' => 'stu', 'PGSC0003DMG400018074' => 'stu', 'Phvul.001G157700' => 'pvu', 'Phvul.002G148550' => 'pvu', 'Phvul.002G320200' => 'pvu', 'Phvul.003G089200' => 'pvu', 'Phvul.007G126000' => 'pvu', 'Phvul.007G126100' => 'pvu', 'Phvul.007G178000' => 'pvu', 'Phvul.007G178200' => 'pvu', 'Potri.002G043000' => 'ptr', 'Potri.002G043200' => 'ptr', 'Potri.003G123750' => 'ptr', 'Potri.005G055401' => 'ptr', 'Potri.005G219700' => 'ptr', 'Potri.005G220000' => 'ptr', 'Potri.008G161901' => 'ptr', 'Potri.008G162000' => 'ptr', 'Potri.008G162400' => 'ptr', 'Potri.010G076900' => 'ptr', 'Pp3c12_9180' => 'ppa', 'Pp3c13_19770' => 'ppa', 'Pp3c14_22950' => 'ppa', 'Pp3c16_12160' => 'ppa', 'Pp3c27_7820' => 'ppa', 'Pp3c2_3490' => 'ppa', 'Pp3c3_23700' => 'ppa', 'Pp3c3_36520' => 'ppa', 'Pp3c4_15250' => 'ppa', 'PRCOL_00007002' => 'pco', 'Prupe.1G030600' => 'ppe', 'Prupe.1G030700' => 'ppe', 'Prupe.6G345200' => 'ppe', 'Prupe.8G230300' => 'ppe', 'Prupe.8G230500' => 'ppe', 'Psat3g059600' => 'psa', 'Psat5g200920' => 'psa', 'Psat6g056440' => 'psa', 'Psat6g057360' => 'psa', 'Psat6g134120' => 'psa', 'Psat6g134160' => 'psa', 'Psat7g008640' => 'psa', 'Psat7g185240' => 'psa', 'PSO017G1330' => 'pso', 'PSO063G6097' => 'pso', 'PSO170G0835' => 'pso', 'PSO170G2499' => 'pso', 'PSO210G5058' => 'pso', 'PSO210G6154' => 'pso', 'PSO585G0031' => 'pso', 'PSO832G0264' => 'pso', 'PSO832G4288' => 'pso', 'QL03p027355' => 'qlo', 'QL03p027430' => 'qlo', 'QL04p081380' => 'qlo', 'QL06p015642' => 'qlo', 'QL06p015650' => 'qlo', 'QL06p015686' => 'qlo', 'QL12p042927' => 'qlo', 'QL93p1863_0035' => 'qlo', 'RcHm_v2.0_Chr3g0450581' => 'rch', 'RcHm_v2.0_Chr4g0390371' => 'rch', 'RcHm_v2.0_Chr4g0390381' => 'rch', 'RcHm_v2.0_Chr4g0390491' => 'rch', 'RcHm_v2.0_Chr4g0390501' => 'rch', 'RcHm_v2.0_Chr6g0289231' => 'rch', 'Rhsim04G0190400' => 'rsi', 'Rhsim04G0190500' => 'rsi', 'Rhsim04G0190600' => 'rsi', 'Rhsim13G0031400' => 'rsi', 'Rhsim13G0165600' => 'rsi', 'RhsimUnG0114600' => 'rsi', 'RhsimUnG0114700' => 'rsi', 'Sabra02G0034800' => 'sbr', 'Sabra02G0035100' => 'sbr', 'Sabra05G0168600' => 'sbr', 'Sabra05G0168800' => 'sbr', 'Sabra08G0123700' => 'sbr', 'Sabra10G0031900' => 'sbr', 'Sabra13G0039000' => 'sbr', 'SalBow2G0782' => 'sbo', 'SalBow2G1403' => 'sbo', 'SalBow4G0074' => 'sbo', 'SalBow4G2635' => 'sbo', 'SalBow5G3010' => 'sbo', 'Sc05g0000870' => 'sci', 'Sc05g0000890' => 'sci', 'Sc13g0005000' => 'sci', 'Sc13g0005030' => 'sci', 'Sc19g0003790' => 'sci', 'Sc19g0003800' => 'sci', 'Sed0003467' => 'sed', 'Sed0009355' => 'sed', 'Sed0009894' => 'sed', 'Sed0011972' => 'sed', 'Sed0021483' => 'sed', 'Sed0021750' => 'sed', 'Sed0026279' => 'sed', 'SEGI_05312' => 'sgi', 'SEGI_10112' => 'sgi', 'SEGI_15835' => 'sgi', 'SEGI_30386' => 'sgi', 'SEGI_34122' => 'sgi', 'SEGI_35063' => 'sgi', 'SGA_v2.0_scaffold101G29794' => 'sas', 'SGA_v2.0_scaffold1G00573' => 'sas', 'SGA_v2.0_scaffold79G25637' => 'sas', 'SGA_v2.0_scaffold88G27283' => 'sas', 'SGA_v2.0_scaffold88G27285' => 'sas', 'SGA_v2.0_scaffold88G27331' => 'sas', 'SHI09937' => 'shi', 'SMO119G0302' => 'smo', 'SMO137G0231' => 'smo', 'SMO367G1151' => 'smo', 'Solyc02g082000.3' => 'sly', 'Solyc06g031670.3' => 'sly', 'Solyc06g053810.3' => 'sly', 'Solyc07g025457.1' => 'sly', 'Solyc08g059740.1' => 'sly', 'Solyc08g059750.3' => 'sly', 'Solyc09g083370.3' => 'sly', 'Solyc12g038950.3' => 'sly', 'Sopen02g026630' => 'spe', 'Sopen06g018930' => 'spe', 'Sopen06g018940' => 'spe', 'Sopen08g009460' => 'spe', 'Sopen09g032290' => 'spe', 'Sp1g03080' => 'spa', 'Sp1g03090' => 'spa', 'Sp1g05480' => 'spa', 'Sp2g07860' => 'spa', 'Sp2g08430' => 'spa', 'Sp2g08440' => 'spa', 'Sp2g26200' => 'spa', 'Sp4g13170' => 'spa', 'Sp6g33840' => 'spa', 'SpUn1204_0010' => 'spa', 'TAR365G0908' => 'tar', 'TAR381G1270' => 'tar', 'TAR381G1651' => 'tar', 'TAR625G1131' => 'tar', 'TAR633G0962' => 'tar', 'TAR633G1729' => 'tar', 'TAR633G1864' => 'tar', 'TAR636G0221' => 'tar', 'TAR636G0314' => 'tar', 'TAR636G3202' => 'tar', 'THA.LOC104800805' => 'tha', 'THA.LOC104801096' => 'tha', 'THA.LOC104801555' => 'tha', 'THA.LOC104808491' => 'tha', 'THA.LOC104808595' => 'tha', 'THA.LOC104815985' => 'tha', 'THA.LOC104822250' => 'tha', 'THA.LOC104826071' => 'tha', 'Thecc.01G265200' => 'tca', 'Thecc.01G265300' => 'tca', 'Thecc.01G265700' => 'tca', 'Thecc.03G109100' => 'tca', 'Thecc.04G245900' => 'tca', 'Thecc.04G246000' => 'tca', 'Thhalv10003334m.g' => 'esa', 'Thhalv10005508m.g' => 'esa', 'Thhalv10005643m.g' => 'esa', 'Thhalv10007316m.g' => 'esa', 'Thhalv10009006m.g' => 'esa', 'Thhalv10009309m.g' => 'esa', 'Thhalv10014917m.g' => 'esa', 'Thhalv10014919m.g' => 'esa', 'Thhalv10015393m.g' => 'esa', 'Thhalv10016515m.g' => 'esa', 'Thhalv10029242m.g' => 'esa', 'TPR.G16654' => 'tpr', 'TPR.G20589' => 'tpr', 'TPR.G23029' => 'tpr', 'TPR.G27731' => 'tpr', 'TPR.G28889' => 'tpr', 'TPR.G28899' => 'tpr', 'TPR.G30846' => 'tpr', 'TPR.G5452' => 'tpr', 'TPR.G5713' => 'tpr', 'TPR.G9046' => 'tpr', 'TPR.G9061' => 'tpr', 'TWI09G1075' => 'twi', 'TWI12G0806' => 'twi', 'TWI18G0108' => 'twi', 'TWI53G1361' => 'twi', 'TWI73G0185' => 'twi', 'TWI73G0427' => 'twi', 'unitig_37.g12001' => 'ugi', 'unitig_747.g21660' => 'ugi', 'unitig_748.g7232' => 'ugi', 'unitig_748.g7315' => 'ugi', 'unitig_85.g27262' => 'ugi', 'unitig_92.g28220' => 'ugi', 'vmacro02632' => 'vma', 'vmacro08410' => 'vma', 'vmacro08411' => 'vma', 'vmacro15407' => 'vma', 'VMungo0251G3619' => 'vmu', 'VMungo0720G1204' => 'vmu', 'VMungo0720G1918' => 'vmu', 'VMungo0720G2387' => 'vmu', 'VMungo0720G2961' => 'vmu', 'VMungo1215G2154' => 'vmu', 'VMungo1383G2411' => 'vmu', 'Zm00001eb051130' => 'zma', 'Zm00001eb116830' => 'zma', 'Zm00001eb116850' => 'zma', 'Zm00001eb151740' => 'zma', 'Zm00001eb292360' => 'zma', 'Zm00001eb301640' => 'zma' ), 'gf_id' => 'HOM05D000856', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000856' ), 'data_identifier' => 'HOM05D000856', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000856', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p00010' => 'bna', 'A03p04160' => 'bna', 'A03p17160' => 'bna', 'A04p23370' => 'bna', 'A05p14860' => 'bna', 'A08p37020' => 'bna', 'A09p08050' => 'bna', 'A09p66800' => 'bna', 'A09p67940' => 'bna', 'A10p02680' => 'bna', 'A10p05320' => 'bna', 'Aa31LG1G20560' => 'aar', 'Aa31LG1G20610' => 'aar', 'Aa31LG1G7810' => 'aar', 'Aa31LG5G3590' => 'aar', 'Aa31LG5G6140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3819' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4683' => 'aag', 'Actinidia04480' => 'ach', 'Actinidia05466' => 'ach', 'Actinidia08445' => 'ach', 'Actinidia21170' => 'ach', 'Actinidia24812' => 'ach', 'Actinidia24951' => 'ach', 'Actinidia40088' => 'ach', 'Ah.02g111660' => 'amhyb', 'Ah.11g048900' => 'amhyb', 'Ah.11g049910' => 'amhyb', 'AL1G13870' => 'aly', 'AL1G13880' => 'aly', 'AL1G16760' => 'aly', 'AL390U10020' => 'aly', 'AL4G25520' => 'aly', 'AL6G19890' => 'aly', 'AL6G19900' => 'aly', 'AL6G19910' => 'aly', 'AL8G40100' => 'aly', 'Aqoxy2G03562' => 'aox', 'Aqoxy5G00316' => 'aox', 'Aqoxy5G00926' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1628KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1H403S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2FU6SJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.882I6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8YRY2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YN1SN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AF70II' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZA8L1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F916KL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHRD8H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KTZ8QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S22EMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8M29T' => 'arhy', 'AT1G04270' => 'ath', 'AT1G04280' => 'ath', 'AT1G06750' => 'ath', 'AT1G33850' => 'ath', 'AT2G30630' => 'ath', 'AT5G09490' => 'ath', 'AT5G09500' => 'ath', 'AT5G09510' => 'ath', 'AT5G43640' => 'ath', 'AT5G63070' => 'ath', 'ATR0605G315' => 'atr', 'Atru.chr11.175' => 'acertr', 'Atru.chr11.653' => 'acertr', 'Atru.chr3.1616' => 'acertr', 'Atru.chr4.2230' => 'acertr', 'Atru.chr4.2232' => 'acertr', 'Atru.chr5.1598' => 'acertr', 'Atru.chr5.1600' => 'acertr', 'Atru.chr5.2188' => 'acertr', 'AUR62008326' => 'cqu', 'AUR62011922' => 'cqu', 'AUR62011924' => 'cqu', 'AUR62021771' => 'cqu', 'AUR62032237' => 'cqu', 'AUR62032240' => 'cqu', 'BcaB01g05572' => 'bca', 'BcaB02g10337' => 'bca', 'BcaB04g19944' => 'bca', 'BcaB05g21548' => 'bca', 'BcaB05g21549' => 'bca', 'BcaB05g23227' => 'bca', 'BcaB06g26256' => 'bca', 'BcaB06g26257' => 'bca', 'BcaB06g28379' => 'bca', 'BcaC02g11159' => 'bca', 'BcaC03g13258' => 'bca', 'BcaC03g13259' => 'bca', 'BcaC05g24456' => 'bca', 'BcaC05g24457' => 'bca', 'BcaC07g36922' => 'bca', 'BcaC07g36923' => 'bca', 'BcaC07g42050' => 'bca', 'BcaC07g42176' => 'bca', 'BcaC07g42195' => 'bca', 'BcaC07g42196' => 'bca', 'BcaNung06674' => 'bca', 'BolC2t06351H' => 'bol', 'BolC2t06352H' => 'bol', 'BolC3t12993H' => 'bol', 'BolC4t23525H' => 'bol', 'BolC4t27475H' => 'bol', 'BolC5t29025H' => 'bol', 'BolC5t29026H' => 'bol', 'BolC8t46898H' => 'bol', 'BolC8t46899H' => 'bol', 'BolC8t52630H' => 'bol', 'BolC8t52765H' => 'bol', 'BolC9t53824H' => 'bol', 'BraA03t09760Z' => 'bra', 'BraA03t10990Z' => 'bra', 'BraA05t20413Z' => 'bra', 'BraA08t35602Z' => 'bra', 'BraA09t36458Z' => 'bra', 'BraA09t42018Z' => 'bra', 'BraA09t42129Z' => 'bra', 'BraA10t42536Z' => 'bra', 'BraA10t42537Z' => 'bra', 'C01p10690' => 'bna', 'C02p03890' => 'bna', 'C02p03900' => 'bna', 'C03p04620' => 'bna', 'C04p19870' => 'bna', 'C04p59670' => 'bna', 'C05p02460' => 'bna', 'C05p02470' => 'bna', 'C08p00980' => 'bna', 'C08p00990' => 'bna', 'C08p51030' => 'bna', 'C08p52360' => 'bna', 'C09p09120' => 'bna', 'CAN.G19.15' => 'can', 'CAN.G251.10' => 'can', 'CAN.G251.9' => 'can', 'CAN.G398.24' => 'can', 'CAN.G410.32' => 'can', 'CAN.G881.2' => 'can', 'CANSAT01G3025' => 'cansat', 'CANSAT78G1211' => 'cansat', 'CANSAT78G1218' => 'cansat', 'CANSAT78G1521' => 'cansat', 'CANSAT78G1670' => 'cansat', 'CARHR003600' => 'chi', 'CARHR003610' => 'chi', 'CARHR006290' => 'chi', 'CARHR006430' => 'chi', 'CARHR124110' => 'chi', 'CARHR203870' => 'chi', 'CARHR203880' => 'chi', 'CARHR203890' => 'chi', 'CARHR276880' => 'chi', 'Carub.0001s0346' => 'cru', 'Carub.0001s0347' => 'cru', 'Carub.0001s0607' => 'cru', 'Carub.0003s2768' => 'cru', 'Carub.0003s2769' => 'cru', 'Carub.0004s1178' => 'cru', 'Carub.0006s0806' => 'cru', 'Carub.0006s0807' => 'cru', 'Carub.0006s0808' => 'cru', 'Carub.0008s0501' => 'cru', 'Carub.0008s2379' => 'cru', 'Ca_08655_v3' => 'car', 'Ca_08922_v3' => 'car', 'Ca_08923_v3' => 'car', 'Ca_09119_v3' => 'car', 'Ca_09703_v3' => 'car', 'Ca_09705_v3' => 'car', 'Ca_09835_v3' => 'car', 'Ca_26403_v3' => 'car', 'Ca_30719_v3' => 'car', 'CBR_g17958' => 'cbr', 'CBR_g40516' => 'cbr', 'Cc00_g05350' => 'ccan', 'Cc01_g18690' => 'ccan', 'Cc03_g04830' => 'ccan', 'Cc03_g04850' => 'ccan', 'CDE02G4469' => 'cde', 'CDE06G0883' => 'cde', 'CDE06G1295' => 'cde', 'CDE06G1390' => 'cde', 'CDE07G0584' => 'cde', 'CDE07G1084' => 'cde', 'CDE08G1259' => 'cde', 'Cfa002341' => 'cfa', 'Cfa024337' => 'cfa', 'Ciclev10004749m.g' => 'ccl', 'Ciclev10006127m.g' => 'ccl', 'Ciclev10019720m.g' => 'ccl', 'Ciclev10022652m.g' => 'ccl', 'CiPaw.01G190400' => 'cil', 'CiPaw.01G190500' => 'cil', 'CiPaw.02G116400' => 'cil', 'CiPaw.02G116500' => 'cil', 'CiPaw.04G183000' => 'cil', 'CiPaw.04G183300' => 'cil', 'ClCG05G004610' => 'cla', 'ClCG05G004620' => 'cla', 'ClCG06G006730' => 'cla', 'ClCG06G006740' => 'cla', 'ClCG11G003690' => 'cla', 'COL.COLO4_08276' => 'col', 'COL.COLO4_08277' => 'col', 'COL.COLO4_15787' => 'col', 'COL.COLO4_15789' => 'col', 'Cpa.g.c44815' => 'cpa', 'Cpa.g.sc52.144' => 'cpa', 'Cpa.g.sc58.46' => 'cpa', 'Cpa.g.sc58.47' => 'cpa', 'Cre08.g360900' => 'cre', 'CsaV3_2G013030' => 'csa', 'CsaV3_2G013050' => 'csa', 'CsaV3_2G015620' => 'csa', 'CsaV3_3G012590' => 'csa', 'CsaV3_3G012600' => 'csa', 'CSS0001641' => 'camsi', 'CSS0008310' => 'camsi', 'CSS0013011' => 'camsi', 'CSS0017147' => 'camsi', 'CSS0022970' => 'camsi', 'CSS0025655' => 'camsi', 'CSS0028665' => 'camsi', 'CSS0029117' => 'camsi', 'CSS0032024' => 'camsi', 'CSS0039681' => 'camsi', 'CSS0046516' => 'camsi', 'CSS0050307' => 'camsi', 'DCAR_005871' => 'dca', 'DCAR_007342' => 'dca', 'DCAR_024228' => 'dca', 'DCAR_027277' => 'dca', 'DCAR_030718' => 'dca', 'Dinv20287' => 'din', 'Dinv22461' => 'din', 'Dinv22464' => 'din', 'Dinv29912' => 'din', 'Dinv29913' => 'din', 'Dinv34580' => 'din', 'Dinv34582' => 'din', 'Dinv44632' => 'din', 'Duzib052G0266' => 'dzi', 'Duzib133G0907' => 'dzi', 'Duzib133G1034' => 'dzi', 'Duzib138G0207' => 'dzi', 'Duzib138G0491' => 'dzi', 'Duzib151G0812' => 'dzi', 'Duzib151G1166' => 'dzi', 'Duzib168G0192' => 'dzi', 'Duzib211G0077' => 'dzi', 'Duzib212G0429' => 'dzi', 'Duzib212G0472' => 'dzi', 'ECA233G2617' => 'eca', 'ECA236G4188' => 'eca', 'ECA240G0936' => 'eca', 'ECA240G1129' => 'eca', 'ECA247G0623' => 'eca', 'EL10Ac5g10451' => 'bvu', 'EL10Ac5g10453' => 'bvu', 'EL10Ac5g10894' => 'bvu', 'Eucgr.H00192' => 'egr', 'Eucgr.H00193' => 'egr', 'Eucgr.H00194' => 'egr', 'Eucgr.J01562' => 'egr', 'Eucgr.K03301' => 'egr', 'FAN02G0632' => 'fan', 'FAN05G5378' => 'fan', 'FAN09G3247' => 'fan', 'FAN12G0435' => 'fan', 'FAN12G2426' => 'fan', 'FAN14G1707' => 'fan', 'FAN14G4725' => 'fan', 'FAN15G2071' => 'fan', 'FAN17G3065' => 'fan', 'FAN19G1376' => 'fan', 'FAN20G0354' => 'fan', 'FAN20G2429' => 'fan', 'FAN20G2658' => 'fan', 'FAN24G2343' => 'fan', 'FAN27G2362' => 'fan', 'FAN28G1765' => 'fan', 'FvH4_1g16020' => 'fve', 'FvH4_2g04890' => 'fve', 'FvH4_2g22270' => 'fve', 'FvH4_4g02630' => 'fve', 'FvH4_4g02640' => 'fve', 'FvH4_6g02650' => 'fve', 'Glyma.02G140600' => 'gma', 'Glyma.03G159900' => 'gma', 'Glyma.05G234800' => 'gma', 'Glyma.07G269600' => 'gma', 'Glyma.08G042300' => 'gma', 'Glyma.10G033500' => 'gma', 'Glyma.10G185200' => 'gma', 'Glyma.17G004300' => 'gma', 'Glyma.19G161900' => 'gma', 'Glyma.20G205100' => 'gma', 'Glyma.20G205200' => 'gma', 'Gohir.A01G139101' => 'ghi', 'Gohir.A02G035600' => 'ghi', 'Gohir.A02G117901' => 'ghi', 'Gohir.A07G210100' => 'ghi', 'Gohir.A07G210200' => 'ghi', 'Gohir.A08G061100' => 'ghi', 'Gohir.A09G223000' => 'ghi', 'Gohir.A09G223100' => 'ghi', 'Gohir.A10G113900' => 'ghi', 'Gohir.A10G114000' => 'ghi', 'Gohir.D02G042300' => 'ghi', 'Gohir.D07G216100' => 'ghi', 'Gohir.D07G216200' => 'ghi', 'Gohir.D08G070400' => 'ghi', 'Gohir.D09G225000' => 'ghi', 'Gohir.D09G225100' => 'ghi', 'Gohir.D10G152300' => 'ghi', 'Gohir.D10G153200' => 'ghi', 'Gohir.D11G133701' => 'ghi', 'Gorai.004G074100' => 'gra', 'Gorai.005G046800' => 'gra', 'Gorai.006G246500' => 'gra', 'Gorai.006G246600' => 'gra', 'Gorai.007G142900' => 'gra', 'Gorai.011G171000' => 'gra', 'Gorai.011G171100' => 'gra', 'Gorai.013G104300' => 'gra', 'Gorai.013G104400' => 'gra', 'GSVIVG01000754001' => 'vvi', 'GSVIVG01000756001' => 'vvi', 'GSVIVG01010903001' => 'vvi', 'GSVIVG01017623001' => 'vvi', 'GSVIVG01018113001' => 'vvi', 'GSVIVG01018116001' => 'vvi', 'GSVIVG01018118001' => 'vvi', 'HanXRQChr03g0076211' => 'han', 'HanXRQChr03g0092431' => 'han', 'HanXRQChr03g0092441' => 'han', 'HanXRQChr03g0092591' => 'han', 'HanXRQChr03g0092671' => 'han', 'HanXRQChr03g0092681' => 'han', 'HanXRQChr03g0092691' => 'han', 'HanXRQChr03g0092701' => 'han', 'HanXRQChr03g0092721' => 'han', 'HanXRQChr03g0092731' => 'han', 'HanXRQChr04g0113681' => 'han', 'HanXRQChr10g0281371' => 'han', 'HanXRQChr11g0337141' => 'han', 'HanXRQChr13g0424521' => 'han', 'HanXRQChr13g0424531' => 'han', 'HanXRQChr13g0424541' => 'han', 'HanXRQChr16g0498221' => 'han', 'Haze_04377' => 'cav', 'Haze_11298' => 'cav', 'Haze_24547' => 'cav', 'Haze_24550' => 'cav', 'Haze_26587' => 'cav', 'Hma1.2p1_0650F.1_g195410' => 'hma', 'Hma1.2p1_0893F.1_g233470' => 'hma', 'HPP92_006508' => 'vpl', 'HPP92_024780' => 'vpl', 'Hund02688' => 'sun', 'Hund09380' => 'sun', 'Hund09381' => 'sun', 'Hund09832' => 'sun', 'Hund09833' => 'sun', 'Hund11351' => 'sun', 'Hund11513' => 'sun', 'Lalb_Chr06g0162591' => 'lal', 'Lalb_Chr06g0162601' => 'lal', 'Lalb_Chr06g0169321' => 'lal', 'Lalb_Chr09g0330951' => 'lal', 'Lalb_Chr16g0387631' => 'lal', 'Lalb_Chr21g0306241' => 'lal', 'Lalb_Chr25g0290051' => 'lal', 'Lalb_Chr25g0290061' => 'lal', 'Lalb_Chr25g0290071' => 'lal', 'Lj1g0003876' => 'lja', 'Lj1P1207T36' => 'lonja', 'Lj2C1156G12' => 'lonja', 'Lj3A793G39' => 'lonja', 'Lj3C580G2' => 'lonja', 'Lj3C780G2' => 'lonja', 'Lj3C780T4' => 'lonja', 'Lj3C793G9' => 'lonja', 'Lj4g0012960' => 'lja', 'Lj5g0021252' => 'lja', 'Lj5g0021484' => 'lja', 'Lj5g0024528' => 'lja', 'Lj6A399T12' => 'lonja', 'Lj6A656G65' => 'lonja', 'Lsat_1_v5_gn_3_125500' => 'lsa', 'Lsat_1_v5_gn_3_125540' => 'lsa', 'Lsat_1_v5_gn_5_72701' => 'lsa', 'Lsat_1_v5_gn_8_91560' => 'lsa', 'Lsat_1_v5_gn_9_9640' => 'lsa', 'Manes.01G200600' => 'mes', 'Manes.01G200700' => 'mes', 'Manes.03G168900' => 'mes', 'Manes.03G169000' => 'mes', 'Manes.05G085801' => 'mes', 'Manes.05G086200' => 'mes', 'Manes.15G036700' => 'mes', 'Manes.15G036900' => 'mes', 'Mapoly0004s0172' => 'mpo', 'Mapoly0023s0001' => 'mpo', 'Mapoly0142s0012' => 'mpo', 'MBI01_g32854_MAGBIO' => 'mbi', 'MBI11_g24427_MAGBIO' => 'mbi', 'MBI11_g47319_MAGBIO' => 'mbi', 'MCO01G433' => 'mco', 'MD00G1187800' => 'mdo', 'MD04G1226500' => 'mdo', 'MD05G1203900' => 'mdo', 'MD10G1191100' => 'mdo', 'MD12G1243500' => 'mdo', 'MD13G1207000' => 'mdo', 'MD13G1207100' => 'mdo', 'MD16G1208600' => 'mdo', 'Medtr1g050352' => 'mtr', 'Medtr1g070385' => 'mtr', 'Medtr1g070450' => 'mtr', 'Medtr1g075200' => 'mtr', 'Medtr1g075250' => 'mtr', 'Medtr1g075260' => 'mtr', 'Medtr1g475250' => 'mtr', 'Medtr4g075450' => 'mtr', 'Medtr7g096300' => 'mtr', 'Medtr8g105110' => 'mtr', 'MELO3C006470.2' => 'cme', 'MELO3C006471.2' => 'cme', 'MELO3C020772.2' => 'cme', 'MELO3C026780.2' => 'cme', 'MELO3C026781.2' => 'cme', 'Migut.D00390' => 'egut', 'Migut.G00435' => 'egut', 'Migut.G00436' => 'egut', 'Migut.G00718' => 'egut', 'MSTRG.21891' => 'ama', 'MSTRG.26910' => 'ama', 'MSTRG.4099' => 'ama', 'MSTRG.9925' => 'ama', 'Nitab4.5_0000165g0010' => 'nta', 'Nitab4.5_0000209g0180' => 'nta', 'Nitab4.5_0000244g0440' => 'nta', 'Nitab4.5_0000525g0220' => 'nta', 'Nitab4.5_0001597g0020' => 'nta', 'Nitab4.5_0001878g0040' => 'nta', 'Nitab4.5_0001878g0060' => 'nta', 'Nitab4.5_0002838g0100' => 'nta', 'Nitab4.5_0002838g0120' => 'nta', 'Nitab4.5_0004798g0030' => 'nta', 'Nitab4.5_0005420g0010' => 'nta', 'Nitab4.5_0005507g0010' => 'nta', 'Nitab4.5_0005574g0020' => 'nta', 'Nitab4.5_0005838g0010' => 'nta', 'Nitab4.5_0010580g0020' => 'nta', 'Nn1g02599' => 'nnu', 'Nn1g02608' => 'nnu', 'Nn3g17742' => 'nnu', 'Nn3g19534' => 'nnu', 'Nn3g19535' => 'nnu', 'Oeu008790.1' => 'oeu', 'Oeu008792.1' => 'oeu', 'Oeu032590.1' => 'oeu', 'Oeu035349.1' => 'oeu', 'Oeu049791.1' => 'oeu', 'Os01g0774500' => 'osa', 'Os03g0628800' => 'osa', 'Os03g0798600' => 'osa', 'Os05g0508800' => 'osa', 'Peaxi162Scf00036g02018' => 'pax', 'Peaxi162Scf00578g00032' => 'pax', 'Peaxi162Scf00578g00317' => 'pax', 'Peaxi162Scf00785g00114' => 'pax', 'Peaxi162Scf00813g00119' => 'pax', 'Peaxi162Scf00906g00227' => 'pax', 'PGR004G0875' => 'pgr', 'PGR004G2424' => 'pgr', 'PGR031G1239' => 'pgr', 'PGR031G2474' => 'pgr', 'PGR044G0423' => 'pgr', 'PGSC0003DMG400001128' => 'stu', 'PGSC0003DMG400007336' => 'stu', 'PGSC0003DMG400016318' => 'stu', 'PGSC0003DMG400016319' => 'stu', 'PGSC0003DMG400018074' => 'stu', 'Phvul.001G157700' => 'pvu', 'Phvul.002G148550' => 'pvu', 'Phvul.002G320200' => 'pvu', 'Phvul.003G089200' => 'pvu', 'Phvul.007G126000' => 'pvu', 'Phvul.007G126100' => 'pvu', 'Phvul.007G178000' => 'pvu', 'Phvul.007G178200' => 'pvu', 'Potri.002G043000' => 'ptr', 'Potri.002G043200' => 'ptr', 'Potri.003G123750' => 'ptr', 'Potri.005G055401' => 'ptr', 'Potri.005G219700' => 'ptr', 'Potri.005G220000' => 'ptr', 'Potri.008G161901' => 'ptr', 'Potri.008G162000' => 'ptr', 'Potri.008G162400' => 'ptr', 'Potri.010G076900' => 'ptr', 'Pp3c12_9180' => 'ppa', 'Pp3c13_19770' => 'ppa', 'Pp3c14_22950' => 'ppa', 'Pp3c16_12160' => 'ppa', 'Pp3c27_7820' => 'ppa', 'Pp3c2_3490' => 'ppa', 'Pp3c3_23700' => 'ppa', 'Pp3c3_36520' => 'ppa', 'Pp3c4_15250' => 'ppa', 'PRCOL_00007002' => 'pco', 'Prupe.1G030600' => 'ppe', 'Prupe.1G030700' => 'ppe', 'Prupe.6G345200' => 'ppe', 'Prupe.8G230300' => 'ppe', 'Prupe.8G230500' => 'ppe', 'Psat3g059600' => 'psa', 'Psat5g200920' => 'psa', 'Psat6g056440' => 'psa', 'Psat6g057360' => 'psa', 'Psat6g134120' => 'psa', 'Psat6g134160' => 'psa', 'Psat7g008640' => 'psa', 'Psat7g185240' => 'psa', 'PSO017G1330' => 'pso', 'PSO063G6097' => 'pso', 'PSO170G0835' => 'pso', 'PSO170G2499' => 'pso', 'PSO210G5058' => 'pso', 'PSO210G6154' => 'pso', 'PSO585G0031' => 'pso', 'PSO832G0264' => 'pso', 'PSO832G4288' => 'pso', 'QL03p027355' => 'qlo', 'QL03p027430' => 'qlo', 'QL04p081380' => 'qlo', 'QL06p015642' => 'qlo', 'QL06p015650' => 'qlo', 'QL06p015686' => 'qlo', 'QL12p042927' => 'qlo', 'QL93p1863_0035' => 'qlo', 'RcHm_v2.0_Chr3g0450581' => 'rch', 'RcHm_v2.0_Chr4g0390371' => 'rch', 'RcHm_v2.0_Chr4g0390381' => 'rch', 'RcHm_v2.0_Chr4g0390491' => 'rch', 'RcHm_v2.0_Chr4g0390501' => 'rch', 'RcHm_v2.0_Chr6g0289231' => 'rch', 'Rhsim04G0190400' => 'rsi', 'Rhsim04G0190500' => 'rsi', 'Rhsim04G0190600' => 'rsi', 'Rhsim13G0031400' => 'rsi', 'Rhsim13G0165600' => 'rsi', 'RhsimUnG0114600' => 'rsi', 'RhsimUnG0114700' => 'rsi', 'Sabra02G0034800' => 'sbr', 'Sabra02G0035100' => 'sbr', 'Sabra05G0168600' => 'sbr', 'Sabra05G0168800' => 'sbr', 'Sabra08G0123700' => 'sbr', 'Sabra10G0031900' => 'sbr', 'Sabra13G0039000' => 'sbr', 'SalBow2G0782' => 'sbo', 'SalBow2G1403' => 'sbo', 'SalBow4G0074' => 'sbo', 'SalBow4G2635' => 'sbo', 'SalBow5G3010' => 'sbo', 'Sc05g0000870' => 'sci', 'Sc05g0000890' => 'sci', 'Sc13g0005000' => 'sci', 'Sc13g0005030' => 'sci', 'Sc19g0003790' => 'sci', 'Sc19g0003800' => 'sci', 'Sed0003467' => 'sed', 'Sed0009355' => 'sed', 'Sed0009894' => 'sed', 'Sed0011972' => 'sed', 'Sed0021483' => 'sed', 'Sed0021750' => 'sed', 'Sed0026279' => 'sed', 'SEGI_05312' => 'sgi', 'SEGI_10112' => 'sgi', 'SEGI_15835' => 'sgi', 'SEGI_30386' => 'sgi', 'SEGI_34122' => 'sgi', 'SEGI_35063' => 'sgi', 'SGA_v2.0_scaffold101G29794' => 'sas', 'SGA_v2.0_scaffold1G00573' => 'sas', 'SGA_v2.0_scaffold79G25637' => 'sas', 'SGA_v2.0_scaffold88G27283' => 'sas', 'SGA_v2.0_scaffold88G27285' => 'sas', 'SGA_v2.0_scaffold88G27331' => 'sas', 'SHI09937' => 'shi', 'SMO119G0302' => 'smo', 'SMO137G0231' => 'smo', 'SMO367G1151' => 'smo', 'Solyc02g082000.3' => 'sly', 'Solyc06g031670.3' => 'sly', 'Solyc06g053810.3' => 'sly', 'Solyc07g025457.1' => 'sly', 'Solyc08g059740.1' => 'sly', 'Solyc08g059750.3' => 'sly', 'Solyc09g083370.3' => 'sly', 'Solyc12g038950.3' => 'sly', 'Sopen02g026630' => 'spe', 'Sopen06g018930' => 'spe', 'Sopen06g018940' => 'spe', 'Sopen08g009460' => 'spe', 'Sopen09g032290' => 'spe', 'Sp1g03080' => 'spa', 'Sp1g03090' => 'spa', 'Sp1g05480' => 'spa', 'Sp2g07860' => 'spa', 'Sp2g08430' => 'spa', 'Sp2g08440' => 'spa', 'Sp2g26200' => 'spa', 'Sp4g13170' => 'spa', 'Sp6g33840' => 'spa', 'SpUn1204_0010' => 'spa', 'TAR365G0908' => 'tar', 'TAR381G1270' => 'tar', 'TAR381G1651' => 'tar', 'TAR625G1131' => 'tar', 'TAR633G0962' => 'tar', 'TAR633G1729' => 'tar', 'TAR633G1864' => 'tar', 'TAR636G0221' => 'tar', 'TAR636G0314' => 'tar', 'TAR636G3202' => 'tar', 'THA.LOC104800805' => 'tha', 'THA.LOC104801096' => 'tha', 'THA.LOC104801555' => 'tha', 'THA.LOC104808491' => 'tha', 'THA.LOC104808595' => 'tha', 'THA.LOC104815985' => 'tha', 'THA.LOC104822250' => 'tha', 'THA.LOC104826071' => 'tha', 'Thecc.01G265200' => 'tca', 'Thecc.01G265300' => 'tca', 'Thecc.01G265700' => 'tca', 'Thecc.03G109100' => 'tca', 'Thecc.04G245900' => 'tca', 'Thecc.04G246000' => 'tca', 'Thhalv10003334m.g' => 'esa', 'Thhalv10005508m.g' => 'esa', 'Thhalv10005643m.g' => 'esa', 'Thhalv10007316m.g' => 'esa', 'Thhalv10009006m.g' => 'esa', 'Thhalv10009309m.g' => 'esa', 'Thhalv10014917m.g' => 'esa', 'Thhalv10014919m.g' => 'esa', 'Thhalv10015393m.g' => 'esa', 'Thhalv10016515m.g' => 'esa', 'Thhalv10029242m.g' => 'esa', 'TPR.G16654' => 'tpr', 'TPR.G20589' => 'tpr', 'TPR.G23029' => 'tpr', 'TPR.G27731' => 'tpr', 'TPR.G28889' => 'tpr', 'TPR.G28899' => 'tpr', 'TPR.G30846' => 'tpr', 'TPR.G5452' => 'tpr', 'TPR.G5713' => 'tpr', 'TPR.G9046' => 'tpr', 'TPR.G9061' => 'tpr', 'TWI09G1075' => 'twi', 'TWI12G0806' => 'twi', 'TWI18G0108' => 'twi', 'TWI53G1361' => 'twi', 'TWI73G0185' => 'twi', 'TWI73G0427' => 'twi', 'unitig_37.g12001' => 'ugi', 'unitig_747.g21660' => 'ugi', 'unitig_748.g7232' => 'ugi', 'unitig_748.g7315' => 'ugi', 'unitig_85.g27262' => 'ugi', 'unitig_92.g28220' => 'ugi', 'vmacro02632' => 'vma', 'vmacro08410' => 'vma', 'vmacro08411' => 'vma', 'vmacro15407' => 'vma', 'VMungo0251G3619' => 'vmu', 'VMungo0720G1204' => 'vmu', 'VMungo0720G1918' => 'vmu', 'VMungo0720G2387' => 'vmu', 'VMungo0720G2961' => 'vmu', 'VMungo1215G2154' => 'vmu', 'VMungo1383G2411' => 'vmu', 'Zm00001eb051130' => 'zma', 'Zm00001eb116830' => 'zma', 'Zm00001eb116850' => 'zma', 'Zm00001eb151740' => 'zma', 'Zm00001eb292360' => 'zma', 'Zm00001eb301640' => 'zma' ) $gf_id = 'HOM05D000856' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000856' ) $data_identifier = 'HOM05D000856' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 13, 'ath' => (int) 10, 'atr' => (int) 1, 'acertr' => (int) 8, 'cqu' => (int) 6, 'bca' => (int) 21, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 11, 'car' => (int) 9, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 8, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 5, 'fan' => (int) 16, 'fve' => (int) 6, 'gma' => (int) 11, 'ghi' => (int) 19, 'gra' => (int) 9, 'vvi' => (int) 7, 'han' => (int) 17, 'cav' => (int) 5, 'hma' => (int) 2, 'vpl' => (int) 2, 'sun' => (int) 7, 'lal' => (int) 9, 'lja' => (int) 5, 'lonja' => (int) 9, 'lsa' => (int) 5, 'mes' => (int) 8, 'mpo' => (int) 3, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 10, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 15, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 9, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 9, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 6, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 5, 'spa' => (int) 10, 'tar' => (int) 10, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 11, 'tpr' => (int) 11, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 4, 'vmu' => (int) 7, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb301640' $species_info = array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ) $local_species = 'mdo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000856', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p00010' => 'bna', 'A03p04160' => 'bna', 'A03p17160' => 'bna', 'A04p23370' => 'bna', 'A05p14860' => 'bna', 'A08p37020' => 'bna', 'A09p08050' => 'bna', 'A09p66800' => 'bna', 'A09p67940' => 'bna', 'A10p02680' => 'bna', 'A10p05320' => 'bna', 'Aa31LG1G20560' => 'aar', 'Aa31LG1G20610' => 'aar', 'Aa31LG1G7810' => 'aar', 'Aa31LG5G3590' => 'aar', 'Aa31LG5G6140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3819' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4683' => 'aag', 'Actinidia04480' => 'ach', 'Actinidia05466' => 'ach', 'Actinidia08445' => 'ach', 'Actinidia21170' => 'ach', 'Actinidia24812' => 'ach', 'Actinidia24951' => 'ach', 'Actinidia40088' => 'ach', 'Ah.02g111660' => 'amhyb', 'Ah.11g048900' => 'amhyb', 'Ah.11g049910' => 'amhyb', 'AL1G13870' => 'aly', 'AL1G13880' => 'aly', 'AL1G16760' => 'aly', 'AL390U10020' => 'aly', 'AL4G25520' => 'aly', 'AL6G19890' => 'aly', 'AL6G19900' => 'aly', 'AL6G19910' => 'aly', 'AL8G40100' => 'aly', 'Aqoxy2G03562' => 'aox', 'Aqoxy5G00316' => 'aox', 'Aqoxy5G00926' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1628KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1H403S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2FU6SJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.882I6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8YRY2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YN1SN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AF70II' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZA8L1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F916KL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHRD8H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KTZ8QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S22EMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8M29T' => 'arhy', 'AT1G04270' => 'ath', 'AT1G04280' => 'ath', 'AT1G06750' => 'ath', 'AT1G33850' => 'ath', 'AT2G30630' => 'ath', 'AT5G09490' => 'ath', 'AT5G09500' => 'ath', 'AT5G09510' => 'ath', 'AT5G43640' => 'ath', 'AT5G63070' => 'ath', 'ATR0605G315' => 'atr', 'Atru.chr11.175' => 'acertr', 'Atru.chr11.653' => 'acertr', 'Atru.chr3.1616' => 'acertr', 'Atru.chr4.2230' => 'acertr', 'Atru.chr4.2232' => 'acertr', 'Atru.chr5.1598' => 'acertr', 'Atru.chr5.1600' => 'acertr', 'Atru.chr5.2188' => 'acertr', 'AUR62008326' => 'cqu', 'AUR62011922' => 'cqu', 'AUR62011924' => 'cqu', 'AUR62021771' => 'cqu', 'AUR62032237' => 'cqu', 'AUR62032240' => 'cqu', 'BcaB01g05572' => 'bca', 'BcaB02g10337' => 'bca', 'BcaB04g19944' => 'bca', 'BcaB05g21548' => 'bca', 'BcaB05g21549' => 'bca', 'BcaB05g23227' => 'bca', 'BcaB06g26256' => 'bca', 'BcaB06g26257' => 'bca', 'BcaB06g28379' => 'bca', 'BcaC02g11159' => 'bca', 'BcaC03g13258' => 'bca', 'BcaC03g13259' => 'bca', 'BcaC05g24456' => 'bca', 'BcaC05g24457' => 'bca', 'BcaC07g36922' => 'bca', 'BcaC07g36923' => 'bca', 'BcaC07g42050' => 'bca', 'BcaC07g42176' => 'bca', 'BcaC07g42195' => 'bca', 'BcaC07g42196' => 'bca', 'BcaNung06674' => 'bca', 'BolC2t06351H' => 'bol', 'BolC2t06352H' => 'bol', 'BolC3t12993H' => 'bol', 'BolC4t23525H' => 'bol', 'BolC4t27475H' => 'bol', 'BolC5t29025H' => 'bol', 'BolC5t29026H' => 'bol', 'BolC8t46898H' => 'bol', 'BolC8t46899H' => 'bol', 'BolC8t52630H' => 'bol', 'BolC8t52765H' => 'bol', 'BolC9t53824H' => 'bol', 'BraA03t09760Z' => 'bra', 'BraA03t10990Z' => 'bra', 'BraA05t20413Z' => 'bra', 'BraA08t35602Z' => 'bra', 'BraA09t36458Z' => 'bra', 'BraA09t42018Z' => 'bra', 'BraA09t42129Z' => 'bra', 'BraA10t42536Z' => 'bra', 'BraA10t42537Z' => 'bra', 'C01p10690' => 'bna', 'C02p03890' => 'bna', 'C02p03900' => 'bna', 'C03p04620' => 'bna', 'C04p19870' => 'bna', 'C04p59670' => 'bna', 'C05p02460' => 'bna', 'C05p02470' => 'bna', 'C08p00980' => 'bna', 'C08p00990' => 'bna', 'C08p51030' => 'bna', 'C08p52360' => 'bna', 'C09p09120' => 'bna', 'CAN.G19.15' => 'can', 'CAN.G251.10' => 'can', 'CAN.G251.9' => 'can', 'CAN.G398.24' => 'can', 'CAN.G410.32' => 'can', 'CAN.G881.2' => 'can', 'CANSAT01G3025' => 'cansat', 'CANSAT78G1211' => 'cansat', 'CANSAT78G1218' => 'cansat', 'CANSAT78G1521' => 'cansat', 'CANSAT78G1670' => 'cansat', 'CARHR003600' => 'chi', 'CARHR003610' => 'chi', 'CARHR006290' => 'chi', 'CARHR006430' => 'chi', 'CARHR124110' => 'chi', 'CARHR203870' => 'chi', 'CARHR203880' => 'chi', 'CARHR203890' => 'chi', 'CARHR276880' => 'chi', 'Carub.0001s0346' => 'cru', 'Carub.0001s0347' => 'cru', 'Carub.0001s0607' => 'cru', 'Carub.0003s2768' => 'cru', 'Carub.0003s2769' => 'cru', 'Carub.0004s1178' => 'cru', 'Carub.0006s0806' => 'cru', 'Carub.0006s0807' => 'cru', 'Carub.0006s0808' => 'cru', 'Carub.0008s0501' => 'cru', 'Carub.0008s2379' => 'cru', 'Ca_08655_v3' => 'car', 'Ca_08922_v3' => 'car', 'Ca_08923_v3' => 'car', 'Ca_09119_v3' => 'car', 'Ca_09703_v3' => 'car', 'Ca_09705_v3' => 'car', 'Ca_09835_v3' => 'car', 'Ca_26403_v3' => 'car', 'Ca_30719_v3' => 'car', 'CBR_g17958' => 'cbr', 'CBR_g40516' => 'cbr', 'Cc00_g05350' => 'ccan', 'Cc01_g18690' => 'ccan', 'Cc03_g04830' => 'ccan', 'Cc03_g04850' => 'ccan', 'CDE02G4469' => 'cde', 'CDE06G0883' => 'cde', 'CDE06G1295' => 'cde', 'CDE06G1390' => 'cde', 'CDE07G0584' => 'cde', 'CDE07G1084' => 'cde', 'CDE08G1259' => 'cde', 'Cfa002341' => 'cfa', 'Cfa024337' => 'cfa', 'Ciclev10004749m.g' => 'ccl', 'Ciclev10006127m.g' => 'ccl', 'Ciclev10019720m.g' => 'ccl', 'Ciclev10022652m.g' => 'ccl', 'CiPaw.01G190400' => 'cil', 'CiPaw.01G190500' => 'cil', 'CiPaw.02G116400' => 'cil', 'CiPaw.02G116500' => 'cil', 'CiPaw.04G183000' => 'cil', 'CiPaw.04G183300' => 'cil', 'ClCG05G004610' => 'cla', 'ClCG05G004620' => 'cla', 'ClCG06G006730' => 'cla', 'ClCG06G006740' => 'cla', 'ClCG11G003690' => 'cla', 'COL.COLO4_08276' => 'col', 'COL.COLO4_08277' => 'col', 'COL.COLO4_15787' => 'col', 'COL.COLO4_15789' => 'col', 'Cpa.g.c44815' => 'cpa', 'Cpa.g.sc52.144' => 'cpa', 'Cpa.g.sc58.46' => 'cpa', 'Cpa.g.sc58.47' => 'cpa', 'Cre08.g360900' => 'cre', 'CsaV3_2G013030' => 'csa', 'CsaV3_2G013050' => 'csa', 'CsaV3_2G015620' => 'csa', 'CsaV3_3G012590' => 'csa', 'CsaV3_3G012600' => 'csa', 'CSS0001641' => 'camsi', 'CSS0008310' => 'camsi', 'CSS0013011' => 'camsi', 'CSS0017147' => 'camsi', 'CSS0022970' => 'camsi', 'CSS0025655' => 'camsi', 'CSS0028665' => 'camsi', 'CSS0029117' => 'camsi', 'CSS0032024' => 'camsi', 'CSS0039681' => 'camsi', 'CSS0046516' => 'camsi', 'CSS0050307' => 'camsi', 'DCAR_005871' => 'dca', 'DCAR_007342' => 'dca', 'DCAR_024228' => 'dca', 'DCAR_027277' => 'dca', 'DCAR_030718' => 'dca', 'Dinv20287' => 'din', 'Dinv22461' => 'din', 'Dinv22464' => 'din', 'Dinv29912' => 'din', 'Dinv29913' => 'din', 'Dinv34580' => 'din', 'Dinv34582' => 'din', 'Dinv44632' => 'din', 'Duzib052G0266' => 'dzi', 'Duzib133G0907' => 'dzi', 'Duzib133G1034' => 'dzi', 'Duzib138G0207' => 'dzi', 'Duzib138G0491' => 'dzi', 'Duzib151G0812' => 'dzi', 'Duzib151G1166' => 'dzi', 'Duzib168G0192' => 'dzi', 'Duzib211G0077' => 'dzi', 'Duzib212G0429' => 'dzi', 'Duzib212G0472' => 'dzi', 'ECA233G2617' => 'eca', 'ECA236G4188' => 'eca', 'ECA240G0936' => 'eca', 'ECA240G1129' => 'eca', 'ECA247G0623' => 'eca', 'EL10Ac5g10451' => 'bvu', 'EL10Ac5g10453' => 'bvu', 'EL10Ac5g10894' => 'bvu', 'Eucgr.H00192' => 'egr', 'Eucgr.H00193' => 'egr', 'Eucgr.H00194' => 'egr', 'Eucgr.J01562' => 'egr', 'Eucgr.K03301' => 'egr', 'FAN02G0632' => 'fan', 'FAN05G5378' => 'fan', 'FAN09G3247' => 'fan', 'FAN12G0435' => 'fan', 'FAN12G2426' => 'fan', 'FAN14G1707' => 'fan', 'FAN14G4725' => 'fan', 'FAN15G2071' => 'fan', 'FAN17G3065' => 'fan', 'FAN19G1376' => 'fan', 'FAN20G0354' => 'fan', 'FAN20G2429' => 'fan', 'FAN20G2658' => 'fan', 'FAN24G2343' => 'fan', 'FAN27G2362' => 'fan', 'FAN28G1765' => 'fan', 'FvH4_1g16020' => 'fve', 'FvH4_2g04890' => 'fve', 'FvH4_2g22270' => 'fve', 'FvH4_4g02630' => 'fve', 'FvH4_4g02640' => 'fve', 'FvH4_6g02650' => 'fve', 'Glyma.02G140600' => 'gma', 'Glyma.03G159900' => 'gma', 'Glyma.05G234800' => 'gma', 'Glyma.07G269600' => 'gma', 'Glyma.08G042300' => 'gma', 'Glyma.10G033500' => 'gma', 'Glyma.10G185200' => 'gma', 'Glyma.17G004300' => 'gma', 'Glyma.19G161900' => 'gma', 'Glyma.20G205100' => 'gma', 'Glyma.20G205200' => 'gma', 'Gohir.A01G139101' => 'ghi', 'Gohir.A02G035600' => 'ghi', 'Gohir.A02G117901' => 'ghi', 'Gohir.A07G210100' => 'ghi', 'Gohir.A07G210200' => 'ghi', 'Gohir.A08G061100' => 'ghi', 'Gohir.A09G223000' => 'ghi', 'Gohir.A09G223100' => 'ghi', 'Gohir.A10G113900' => 'ghi', 'Gohir.A10G114000' => 'ghi', 'Gohir.D02G042300' => 'ghi', 'Gohir.D07G216100' => 'ghi', 'Gohir.D07G216200' => 'ghi', 'Gohir.D08G070400' => 'ghi', 'Gohir.D09G225000' => 'ghi', 'Gohir.D09G225100' => 'ghi', 'Gohir.D10G152300' => 'ghi', 'Gohir.D10G153200' => 'ghi', 'Gohir.D11G133701' => 'ghi', 'Gorai.004G074100' => 'gra', 'Gorai.005G046800' => 'gra', 'Gorai.006G246500' => 'gra', 'Gorai.006G246600' => 'gra', 'Gorai.007G142900' => 'gra', 'Gorai.011G171000' => 'gra', 'Gorai.011G171100' => 'gra', 'Gorai.013G104300' => 'gra', 'Gorai.013G104400' => 'gra', 'GSVIVG01000754001' => 'vvi', 'GSVIVG01000756001' => 'vvi', 'GSVIVG01010903001' => 'vvi', 'GSVIVG01017623001' => 'vvi', 'GSVIVG01018113001' => 'vvi', 'GSVIVG01018116001' => 'vvi', 'GSVIVG01018118001' => 'vvi', 'HanXRQChr03g0076211' => 'han', 'HanXRQChr03g0092431' => 'han', 'HanXRQChr03g0092441' => 'han', 'HanXRQChr03g0092591' => 'han', 'HanXRQChr03g0092671' => 'han', 'HanXRQChr03g0092681' => 'han', 'HanXRQChr03g0092691' => 'han', 'HanXRQChr03g0092701' => 'han', 'HanXRQChr03g0092721' => 'han', 'HanXRQChr03g0092731' => 'han', 'HanXRQChr04g0113681' => 'han', 'HanXRQChr10g0281371' => 'han', 'HanXRQChr11g0337141' => 'han', 'HanXRQChr13g0424521' => 'han', 'HanXRQChr13g0424531' => 'han', 'HanXRQChr13g0424541' => 'han', 'HanXRQChr16g0498221' => 'han', 'Haze_04377' => 'cav', 'Haze_11298' => 'cav', 'Haze_24547' => 'cav', 'Haze_24550' => 'cav', 'Haze_26587' => 'cav', 'Hma1.2p1_0650F.1_g195410' => 'hma', 'Hma1.2p1_0893F.1_g233470' => 'hma', 'HPP92_006508' => 'vpl', 'HPP92_024780' => 'vpl', 'Hund02688' => 'sun', 'Hund09380' => 'sun', 'Hund09381' => 'sun', 'Hund09832' => 'sun', 'Hund09833' => 'sun', 'Hund11351' => 'sun', 'Hund11513' => 'sun', 'Lalb_Chr06g0162591' => 'lal', 'Lalb_Chr06g0162601' => 'lal', 'Lalb_Chr06g0169321' => 'lal', 'Lalb_Chr09g0330951' => 'lal', 'Lalb_Chr16g0387631' => 'lal', 'Lalb_Chr21g0306241' => 'lal', 'Lalb_Chr25g0290051' => 'lal', 'Lalb_Chr25g0290061' => 'lal', 'Lalb_Chr25g0290071' => 'lal', 'Lj1g0003876' => 'lja', 'Lj1P1207T36' => 'lonja', 'Lj2C1156G12' => 'lonja', 'Lj3A793G39' => 'lonja', 'Lj3C580G2' => 'lonja', 'Lj3C780G2' => 'lonja', 'Lj3C780T4' => 'lonja', 'Lj3C793G9' => 'lonja', 'Lj4g0012960' => 'lja', 'Lj5g0021252' => 'lja', 'Lj5g0021484' => 'lja', 'Lj5g0024528' => 'lja', 'Lj6A399T12' => 'lonja', 'Lj6A656G65' => 'lonja', 'Lsat_1_v5_gn_3_125500' => 'lsa', 'Lsat_1_v5_gn_3_125540' => 'lsa', 'Lsat_1_v5_gn_5_72701' => 'lsa', 'Lsat_1_v5_gn_8_91560' => 'lsa', 'Lsat_1_v5_gn_9_9640' => 'lsa', 'Manes.01G200600' => 'mes', 'Manes.01G200700' => 'mes', 'Manes.03G168900' => 'mes', 'Manes.03G169000' => 'mes', 'Manes.05G085801' => 'mes', 'Manes.05G086200' => 'mes', 'Manes.15G036700' => 'mes', 'Manes.15G036900' => 'mes', 'Mapoly0004s0172' => 'mpo', 'Mapoly0023s0001' => 'mpo', 'Mapoly0142s0012' => 'mpo', 'MBI01_g32854_MAGBIO' => 'mbi', 'MBI11_g24427_MAGBIO' => 'mbi', 'MBI11_g47319_MAGBIO' => 'mbi', 'MCO01G433' => 'mco', 'MD00G1187800' => 'mdo', 'MD04G1226500' => 'mdo', 'MD05G1203900' => 'mdo', 'MD10G1191100' => 'mdo', 'MD12G1243500' => 'mdo', 'MD13G1207000' => 'mdo', 'MD13G1207100' => 'mdo', 'MD16G1208600' => 'mdo', 'Medtr1g050352' => 'mtr', 'Medtr1g070385' => 'mtr', 'Medtr1g070450' => 'mtr', 'Medtr1g075200' => 'mtr', 'Medtr1g075250' => 'mtr', 'Medtr1g075260' => 'mtr', 'Medtr1g475250' => 'mtr', 'Medtr4g075450' => 'mtr', 'Medtr7g096300' => 'mtr', 'Medtr8g105110' => 'mtr', 'MELO3C006470.2' => 'cme', 'MELO3C006471.2' => 'cme', 'MELO3C020772.2' => 'cme', 'MELO3C026780.2' => 'cme', 'MELO3C026781.2' => 'cme', 'Migut.D00390' => 'egut', 'Migut.G00435' => 'egut', 'Migut.G00436' => 'egut', 'Migut.G00718' => 'egut', 'MSTRG.21891' => 'ama', 'MSTRG.26910' => 'ama', 'MSTRG.4099' => 'ama', 'MSTRG.9925' => 'ama', 'Nitab4.5_0000165g0010' => 'nta', 'Nitab4.5_0000209g0180' => 'nta', 'Nitab4.5_0000244g0440' => 'nta', 'Nitab4.5_0000525g0220' => 'nta', 'Nitab4.5_0001597g0020' => 'nta', 'Nitab4.5_0001878g0040' => 'nta', 'Nitab4.5_0001878g0060' => 'nta', 'Nitab4.5_0002838g0100' => 'nta', 'Nitab4.5_0002838g0120' => 'nta', 'Nitab4.5_0004798g0030' => 'nta', 'Nitab4.5_0005420g0010' => 'nta', 'Nitab4.5_0005507g0010' => 'nta', 'Nitab4.5_0005574g0020' => 'nta', 'Nitab4.5_0005838g0010' => 'nta', 'Nitab4.5_0010580g0020' => 'nta', 'Nn1g02599' => 'nnu', 'Nn1g02608' => 'nnu', 'Nn3g17742' => 'nnu', 'Nn3g19534' => 'nnu', 'Nn3g19535' => 'nnu', 'Oeu008790.1' => 'oeu', 'Oeu008792.1' => 'oeu', 'Oeu032590.1' => 'oeu', 'Oeu035349.1' => 'oeu', 'Oeu049791.1' => 'oeu', 'Os01g0774500' => 'osa', 'Os03g0628800' => 'osa', 'Os03g0798600' => 'osa', 'Os05g0508800' => 'osa', 'Peaxi162Scf00036g02018' => 'pax', 'Peaxi162Scf00578g00032' => 'pax', 'Peaxi162Scf00578g00317' => 'pax', 'Peaxi162Scf00785g00114' => 'pax', 'Peaxi162Scf00813g00119' => 'pax', 'Peaxi162Scf00906g00227' => 'pax', 'PGR004G0875' => 'pgr', 'PGR004G2424' => 'pgr', 'PGR031G1239' => 'pgr', 'PGR031G2474' => 'pgr', 'PGR044G0423' => 'pgr', 'PGSC0003DMG400001128' => 'stu', 'PGSC0003DMG400007336' => 'stu', 'PGSC0003DMG400016318' => 'stu', 'PGSC0003DMG400016319' => 'stu', 'PGSC0003DMG400018074' => 'stu', 'Phvul.001G157700' => 'pvu', 'Phvul.002G148550' => 'pvu', 'Phvul.002G320200' => 'pvu', 'Phvul.003G089200' => 'pvu', 'Phvul.007G126000' => 'pvu', 'Phvul.007G126100' => 'pvu', 'Phvul.007G178000' => 'pvu', 'Phvul.007G178200' => 'pvu', 'Potri.002G043000' => 'ptr', 'Potri.002G043200' => 'ptr', 'Potri.003G123750' => 'ptr', 'Potri.005G055401' => 'ptr', 'Potri.005G219700' => 'ptr', 'Potri.005G220000' => 'ptr', 'Potri.008G161901' => 'ptr', 'Potri.008G162000' => 'ptr', 'Potri.008G162400' => 'ptr', 'Potri.010G076900' => 'ptr', 'Pp3c12_9180' => 'ppa', 'Pp3c13_19770' => 'ppa', 'Pp3c14_22950' => 'ppa', 'Pp3c16_12160' => 'ppa', 'Pp3c27_7820' => 'ppa', 'Pp3c2_3490' => 'ppa', 'Pp3c3_23700' => 'ppa', 'Pp3c3_36520' => 'ppa', 'Pp3c4_15250' => 'ppa', 'PRCOL_00007002' => 'pco', 'Prupe.1G030600' => 'ppe', 'Prupe.1G030700' => 'ppe', 'Prupe.6G345200' => 'ppe', 'Prupe.8G230300' => 'ppe', 'Prupe.8G230500' => 'ppe', 'Psat3g059600' => 'psa', 'Psat5g200920' => 'psa', 'Psat6g056440' => 'psa', 'Psat6g057360' => 'psa', 'Psat6g134120' => 'psa', 'Psat6g134160' => 'psa', 'Psat7g008640' => 'psa', 'Psat7g185240' => 'psa', 'PSO017G1330' => 'pso', 'PSO063G6097' => 'pso', 'PSO170G0835' => 'pso', 'PSO170G2499' => 'pso', 'PSO210G5058' => 'pso', 'PSO210G6154' => 'pso', 'PSO585G0031' => 'pso', 'PSO832G0264' => 'pso', 'PSO832G4288' => 'pso', 'QL03p027355' => 'qlo', 'QL03p027430' => 'qlo', 'QL04p081380' => 'qlo', 'QL06p015642' => 'qlo', 'QL06p015650' => 'qlo', 'QL06p015686' => 'qlo', 'QL12p042927' => 'qlo', 'QL93p1863_0035' => 'qlo', 'RcHm_v2.0_Chr3g0450581' => 'rch', 'RcHm_v2.0_Chr4g0390371' => 'rch', 'RcHm_v2.0_Chr4g0390381' => 'rch', 'RcHm_v2.0_Chr4g0390491' => 'rch', 'RcHm_v2.0_Chr4g0390501' => 'rch', 'RcHm_v2.0_Chr6g0289231' => 'rch', 'Rhsim04G0190400' => 'rsi', 'Rhsim04G0190500' => 'rsi', 'Rhsim04G0190600' => 'rsi', 'Rhsim13G0031400' => 'rsi', 'Rhsim13G0165600' => 'rsi', 'RhsimUnG0114600' => 'rsi', 'RhsimUnG0114700' => 'rsi', 'Sabra02G0034800' => 'sbr', 'Sabra02G0035100' => 'sbr', 'Sabra05G0168600' => 'sbr', 'Sabra05G0168800' => 'sbr', 'Sabra08G0123700' => 'sbr', 'Sabra10G0031900' => 'sbr', 'Sabra13G0039000' => 'sbr', 'SalBow2G0782' => 'sbo', 'SalBow2G1403' => 'sbo', 'SalBow4G0074' => 'sbo', 'SalBow4G2635' => 'sbo', 'SalBow5G3010' => 'sbo', 'Sc05g0000870' => 'sci', 'Sc05g0000890' => 'sci', 'Sc13g0005000' => 'sci', 'Sc13g0005030' => 'sci', 'Sc19g0003790' => 'sci', 'Sc19g0003800' => 'sci', 'Sed0003467' => 'sed', 'Sed0009355' => 'sed', 'Sed0009894' => 'sed', 'Sed0011972' => 'sed', 'Sed0021483' => 'sed', 'Sed0021750' => 'sed', 'Sed0026279' => 'sed', 'SEGI_05312' => 'sgi', 'SEGI_10112' => 'sgi', 'SEGI_15835' => 'sgi', 'SEGI_30386' => 'sgi', 'SEGI_34122' => 'sgi', 'SEGI_35063' => 'sgi', 'SGA_v2.0_scaffold101G29794' => 'sas', 'SGA_v2.0_scaffold1G00573' => 'sas', 'SGA_v2.0_scaffold79G25637' => 'sas', 'SGA_v2.0_scaffold88G27283' => 'sas', 'SGA_v2.0_scaffold88G27285' => 'sas', 'SGA_v2.0_scaffold88G27331' => 'sas', 'SHI09937' => 'shi', 'SMO119G0302' => 'smo', 'SMO137G0231' => 'smo', 'SMO367G1151' => 'smo', 'Solyc02g082000.3' => 'sly', 'Solyc06g031670.3' => 'sly', 'Solyc06g053810.3' => 'sly', 'Solyc07g025457.1' => 'sly', 'Solyc08g059740.1' => 'sly', 'Solyc08g059750.3' => 'sly', 'Solyc09g083370.3' => 'sly', 'Solyc12g038950.3' => 'sly', 'Sopen02g026630' => 'spe', 'Sopen06g018930' => 'spe', 'Sopen06g018940' => 'spe', 'Sopen08g009460' => 'spe', 'Sopen09g032290' => 'spe', 'Sp1g03080' => 'spa', 'Sp1g03090' => 'spa', 'Sp1g05480' => 'spa', 'Sp2g07860' => 'spa', 'Sp2g08430' => 'spa', 'Sp2g08440' => 'spa', 'Sp2g26200' => 'spa', 'Sp4g13170' => 'spa', 'Sp6g33840' => 'spa', 'SpUn1204_0010' => 'spa', 'TAR365G0908' => 'tar', 'TAR381G1270' => 'tar', 'TAR381G1651' => 'tar', 'TAR625G1131' => 'tar', 'TAR633G0962' => 'tar', 'TAR633G1729' => 'tar', 'TAR633G1864' => 'tar', 'TAR636G0221' => 'tar', 'TAR636G0314' => 'tar', 'TAR636G3202' => 'tar', 'THA.LOC104800805' => 'tha', 'THA.LOC104801096' => 'tha', 'THA.LOC104801555' => 'tha', 'THA.LOC104808491' => 'tha', 'THA.LOC104808595' => 'tha', 'THA.LOC104815985' => 'tha', 'THA.LOC104822250' => 'tha', 'THA.LOC104826071' => 'tha', 'Thecc.01G265200' => 'tca', 'Thecc.01G265300' => 'tca', 'Thecc.01G265700' => 'tca', 'Thecc.03G109100' => 'tca', 'Thecc.04G245900' => 'tca', 'Thecc.04G246000' => 'tca', 'Thhalv10003334m.g' => 'esa', 'Thhalv10005508m.g' => 'esa', 'Thhalv10005643m.g' => 'esa', 'Thhalv10007316m.g' => 'esa', 'Thhalv10009006m.g' => 'esa', 'Thhalv10009309m.g' => 'esa', 'Thhalv10014917m.g' => 'esa', 'Thhalv10014919m.g' => 'esa', 'Thhalv10015393m.g' => 'esa', 'Thhalv10016515m.g' => 'esa', 'Thhalv10029242m.g' => 'esa', 'TPR.G16654' => 'tpr', 'TPR.G20589' => 'tpr', 'TPR.G23029' => 'tpr', 'TPR.G27731' => 'tpr', 'TPR.G28889' => 'tpr', 'TPR.G28899' => 'tpr', 'TPR.G30846' => 'tpr', 'TPR.G5452' => 'tpr', 'TPR.G5713' => 'tpr', 'TPR.G9046' => 'tpr', 'TPR.G9061' => 'tpr', 'TWI09G1075' => 'twi', 'TWI12G0806' => 'twi', 'TWI18G0108' => 'twi', 'TWI53G1361' => 'twi', 'TWI73G0185' => 'twi', 'TWI73G0427' => 'twi', 'unitig_37.g12001' => 'ugi', 'unitig_747.g21660' => 'ugi', 'unitig_748.g7232' => 'ugi', 'unitig_748.g7315' => 'ugi', 'unitig_85.g27262' => 'ugi', 'unitig_92.g28220' => 'ugi', 'vmacro02632' => 'vma', 'vmacro08410' => 'vma', 'vmacro08411' => 'vma', 'vmacro15407' => 'vma', 'VMungo0251G3619' => 'vmu', 'VMungo0720G1204' => 'vmu', 'VMungo0720G1918' => 'vmu', 'VMungo0720G2387' => 'vmu', 'VMungo0720G2961' => 'vmu', 'VMungo1215G2154' => 'vmu', 'VMungo1383G2411' => 'vmu', 'Zm00001eb051130' => 'zma', 'Zm00001eb116830' => 'zma', 'Zm00001eb116850' => 'zma', 'Zm00001eb151740' => 'zma', 'Zm00001eb292360' => 'zma', 'Zm00001eb301640' => 'zma' ), 'gf_id' => 'HOM05D000856', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000856' ), 'data_identifier' => 'HOM05D000856', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000856', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p00010' => 'bna', 'A03p04160' => 'bna', 'A03p17160' => 'bna', 'A04p23370' => 'bna', 'A05p14860' => 'bna', 'A08p37020' => 'bna', 'A09p08050' => 'bna', 'A09p66800' => 'bna', 'A09p67940' => 'bna', 'A10p02680' => 'bna', 'A10p05320' => 'bna', 'Aa31LG1G20560' => 'aar', 'Aa31LG1G20610' => 'aar', 'Aa31LG1G7810' => 'aar', 'Aa31LG5G3590' => 'aar', 'Aa31LG5G6140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3819' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4683' => 'aag', 'Actinidia04480' => 'ach', 'Actinidia05466' => 'ach', 'Actinidia08445' => 'ach', 'Actinidia21170' => 'ach', 'Actinidia24812' => 'ach', 'Actinidia24951' => 'ach', 'Actinidia40088' => 'ach', 'Ah.02g111660' => 'amhyb', 'Ah.11g048900' => 'amhyb', 'Ah.11g049910' => 'amhyb', 'AL1G13870' => 'aly', 'AL1G13880' => 'aly', 'AL1G16760' => 'aly', 'AL390U10020' => 'aly', 'AL4G25520' => 'aly', 'AL6G19890' => 'aly', 'AL6G19900' => 'aly', 'AL6G19910' => 'aly', 'AL8G40100' => 'aly', 'Aqoxy2G03562' => 'aox', 'Aqoxy5G00316' => 'aox', 'Aqoxy5G00926' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1628KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1H403S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2FU6SJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.882I6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8YRY2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YN1SN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AF70II' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZA8L1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F916KL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHRD8H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KTZ8QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S22EMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8M29T' => 'arhy', 'AT1G04270' => 'ath', 'AT1G04280' => 'ath', 'AT1G06750' => 'ath', 'AT1G33850' => 'ath', 'AT2G30630' => 'ath', 'AT5G09490' => 'ath', 'AT5G09500' => 'ath', 'AT5G09510' => 'ath', 'AT5G43640' => 'ath', 'AT5G63070' => 'ath', 'ATR0605G315' => 'atr', 'Atru.chr11.175' => 'acertr', 'Atru.chr11.653' => 'acertr', 'Atru.chr3.1616' => 'acertr', 'Atru.chr4.2230' => 'acertr', 'Atru.chr4.2232' => 'acertr', 'Atru.chr5.1598' => 'acertr', 'Atru.chr5.1600' => 'acertr', 'Atru.chr5.2188' => 'acertr', 'AUR62008326' => 'cqu', 'AUR62011922' => 'cqu', 'AUR62011924' => 'cqu', 'AUR62021771' => 'cqu', 'AUR62032237' => 'cqu', 'AUR62032240' => 'cqu', 'BcaB01g05572' => 'bca', 'BcaB02g10337' => 'bca', 'BcaB04g19944' => 'bca', 'BcaB05g21548' => 'bca', 'BcaB05g21549' => 'bca', 'BcaB05g23227' => 'bca', 'BcaB06g26256' => 'bca', 'BcaB06g26257' => 'bca', 'BcaB06g28379' => 'bca', 'BcaC02g11159' => 'bca', 'BcaC03g13258' => 'bca', 'BcaC03g13259' => 'bca', 'BcaC05g24456' => 'bca', 'BcaC05g24457' => 'bca', 'BcaC07g36922' => 'bca', 'BcaC07g36923' => 'bca', 'BcaC07g42050' => 'bca', 'BcaC07g42176' => 'bca', 'BcaC07g42195' => 'bca', 'BcaC07g42196' => 'bca', 'BcaNung06674' => 'bca', 'BolC2t06351H' => 'bol', 'BolC2t06352H' => 'bol', 'BolC3t12993H' => 'bol', 'BolC4t23525H' => 'bol', 'BolC4t27475H' => 'bol', 'BolC5t29025H' => 'bol', 'BolC5t29026H' => 'bol', 'BolC8t46898H' => 'bol', 'BolC8t46899H' => 'bol', 'BolC8t52630H' => 'bol', 'BolC8t52765H' => 'bol', 'BolC9t53824H' => 'bol', 'BraA03t09760Z' => 'bra', 'BraA03t10990Z' => 'bra', 'BraA05t20413Z' => 'bra', 'BraA08t35602Z' => 'bra', 'BraA09t36458Z' => 'bra', 'BraA09t42018Z' => 'bra', 'BraA09t42129Z' => 'bra', 'BraA10t42536Z' => 'bra', 'BraA10t42537Z' => 'bra', 'C01p10690' => 'bna', 'C02p03890' => 'bna', 'C02p03900' => 'bna', 'C03p04620' => 'bna', 'C04p19870' => 'bna', 'C04p59670' => 'bna', 'C05p02460' => 'bna', 'C05p02470' => 'bna', 'C08p00980' => 'bna', 'C08p00990' => 'bna', 'C08p51030' => 'bna', 'C08p52360' => 'bna', 'C09p09120' => 'bna', 'CAN.G19.15' => 'can', 'CAN.G251.10' => 'can', 'CAN.G251.9' => 'can', 'CAN.G398.24' => 'can', 'CAN.G410.32' => 'can', 'CAN.G881.2' => 'can', 'CANSAT01G3025' => 'cansat', 'CANSAT78G1211' => 'cansat', 'CANSAT78G1218' => 'cansat', 'CANSAT78G1521' => 'cansat', 'CANSAT78G1670' => 'cansat', 'CARHR003600' => 'chi', 'CARHR003610' => 'chi', 'CARHR006290' => 'chi', 'CARHR006430' => 'chi', 'CARHR124110' => 'chi', 'CARHR203870' => 'chi', 'CARHR203880' => 'chi', 'CARHR203890' => 'chi', 'CARHR276880' => 'chi', 'Carub.0001s0346' => 'cru', 'Carub.0001s0347' => 'cru', 'Carub.0001s0607' => 'cru', 'Carub.0003s2768' => 'cru', 'Carub.0003s2769' => 'cru', 'Carub.0004s1178' => 'cru', 'Carub.0006s0806' => 'cru', 'Carub.0006s0807' => 'cru', 'Carub.0006s0808' => 'cru', 'Carub.0008s0501' => 'cru', 'Carub.0008s2379' => 'cru', 'Ca_08655_v3' => 'car', 'Ca_08922_v3' => 'car', 'Ca_08923_v3' => 'car', 'Ca_09119_v3' => 'car', 'Ca_09703_v3' => 'car', 'Ca_09705_v3' => 'car', 'Ca_09835_v3' => 'car', 'Ca_26403_v3' => 'car', 'Ca_30719_v3' => 'car', 'CBR_g17958' => 'cbr', 'CBR_g40516' => 'cbr', 'Cc00_g05350' => 'ccan', 'Cc01_g18690' => 'ccan', 'Cc03_g04830' => 'ccan', 'Cc03_g04850' => 'ccan', 'CDE02G4469' => 'cde', 'CDE06G0883' => 'cde', 'CDE06G1295' => 'cde', 'CDE06G1390' => 'cde', 'CDE07G0584' => 'cde', 'CDE07G1084' => 'cde', 'CDE08G1259' => 'cde', 'Cfa002341' => 'cfa', 'Cfa024337' => 'cfa', 'Ciclev10004749m.g' => 'ccl', 'Ciclev10006127m.g' => 'ccl', 'Ciclev10019720m.g' => 'ccl', 'Ciclev10022652m.g' => 'ccl', 'CiPaw.01G190400' => 'cil', 'CiPaw.01G190500' => 'cil', 'CiPaw.02G116400' => 'cil', 'CiPaw.02G116500' => 'cil', 'CiPaw.04G183000' => 'cil', 'CiPaw.04G183300' => 'cil', 'ClCG05G004610' => 'cla', 'ClCG05G004620' => 'cla', 'ClCG06G006730' => 'cla', 'ClCG06G006740' => 'cla', 'ClCG11G003690' => 'cla', 'COL.COLO4_08276' => 'col', 'COL.COLO4_08277' => 'col', 'COL.COLO4_15787' => 'col', 'COL.COLO4_15789' => 'col', 'Cpa.g.c44815' => 'cpa', 'Cpa.g.sc52.144' => 'cpa', 'Cpa.g.sc58.46' => 'cpa', 'Cpa.g.sc58.47' => 'cpa', 'Cre08.g360900' => 'cre', 'CsaV3_2G013030' => 'csa', 'CsaV3_2G013050' => 'csa', 'CsaV3_2G015620' => 'csa', 'CsaV3_3G012590' => 'csa', 'CsaV3_3G012600' => 'csa', 'CSS0001641' => 'camsi', 'CSS0008310' => 'camsi', 'CSS0013011' => 'camsi', 'CSS0017147' => 'camsi', 'CSS0022970' => 'camsi', 'CSS0025655' => 'camsi', 'CSS0028665' => 'camsi', 'CSS0029117' => 'camsi', 'CSS0032024' => 'camsi', 'CSS0039681' => 'camsi', 'CSS0046516' => 'camsi', 'CSS0050307' => 'camsi', 'DCAR_005871' => 'dca', 'DCAR_007342' => 'dca', 'DCAR_024228' => 'dca', 'DCAR_027277' => 'dca', 'DCAR_030718' => 'dca', 'Dinv20287' => 'din', 'Dinv22461' => 'din', 'Dinv22464' => 'din', 'Dinv29912' => 'din', 'Dinv29913' => 'din', 'Dinv34580' => 'din', 'Dinv34582' => 'din', 'Dinv44632' => 'din', 'Duzib052G0266' => 'dzi', 'Duzib133G0907' => 'dzi', 'Duzib133G1034' => 'dzi', 'Duzib138G0207' => 'dzi', 'Duzib138G0491' => 'dzi', 'Duzib151G0812' => 'dzi', 'Duzib151G1166' => 'dzi', 'Duzib168G0192' => 'dzi', 'Duzib211G0077' => 'dzi', 'Duzib212G0429' => 'dzi', 'Duzib212G0472' => 'dzi', 'ECA233G2617' => 'eca', 'ECA236G4188' => 'eca', 'ECA240G0936' => 'eca', 'ECA240G1129' => 'eca', 'ECA247G0623' => 'eca', 'EL10Ac5g10451' => 'bvu', 'EL10Ac5g10453' => 'bvu', 'EL10Ac5g10894' => 'bvu', 'Eucgr.H00192' => 'egr', 'Eucgr.H00193' => 'egr', 'Eucgr.H00194' => 'egr', 'Eucgr.J01562' => 'egr', 'Eucgr.K03301' => 'egr', 'FAN02G0632' => 'fan', 'FAN05G5378' => 'fan', 'FAN09G3247' => 'fan', 'FAN12G0435' => 'fan', 'FAN12G2426' => 'fan', 'FAN14G1707' => 'fan', 'FAN14G4725' => 'fan', 'FAN15G2071' => 'fan', 'FAN17G3065' => 'fan', 'FAN19G1376' => 'fan', 'FAN20G0354' => 'fan', 'FAN20G2429' => 'fan', 'FAN20G2658' => 'fan', 'FAN24G2343' => 'fan', 'FAN27G2362' => 'fan', 'FAN28G1765' => 'fan', 'FvH4_1g16020' => 'fve', 'FvH4_2g04890' => 'fve', 'FvH4_2g22270' => 'fve', 'FvH4_4g02630' => 'fve', 'FvH4_4g02640' => 'fve', 'FvH4_6g02650' => 'fve', 'Glyma.02G140600' => 'gma', 'Glyma.03G159900' => 'gma', 'Glyma.05G234800' => 'gma', 'Glyma.07G269600' => 'gma', 'Glyma.08G042300' => 'gma', 'Glyma.10G033500' => 'gma', 'Glyma.10G185200' => 'gma', 'Glyma.17G004300' => 'gma', 'Glyma.19G161900' => 'gma', 'Glyma.20G205100' => 'gma', 'Glyma.20G205200' => 'gma', 'Gohir.A01G139101' => 'ghi', 'Gohir.A02G035600' => 'ghi', 'Gohir.A02G117901' => 'ghi', 'Gohir.A07G210100' => 'ghi', 'Gohir.A07G210200' => 'ghi', 'Gohir.A08G061100' => 'ghi', 'Gohir.A09G223000' => 'ghi', 'Gohir.A09G223100' => 'ghi', 'Gohir.A10G113900' => 'ghi', 'Gohir.A10G114000' => 'ghi', 'Gohir.D02G042300' => 'ghi', 'Gohir.D07G216100' => 'ghi', 'Gohir.D07G216200' => 'ghi', 'Gohir.D08G070400' => 'ghi', 'Gohir.D09G225000' => 'ghi', 'Gohir.D09G225100' => 'ghi', 'Gohir.D10G152300' => 'ghi', 'Gohir.D10G153200' => 'ghi', 'Gohir.D11G133701' => 'ghi', 'Gorai.004G074100' => 'gra', 'Gorai.005G046800' => 'gra', 'Gorai.006G246500' => 'gra', 'Gorai.006G246600' => 'gra', 'Gorai.007G142900' => 'gra', 'Gorai.011G171000' => 'gra', 'Gorai.011G171100' => 'gra', 'Gorai.013G104300' => 'gra', 'Gorai.013G104400' => 'gra', 'GSVIVG01000754001' => 'vvi', 'GSVIVG01000756001' => 'vvi', 'GSVIVG01010903001' => 'vvi', 'GSVIVG01017623001' => 'vvi', 'GSVIVG01018113001' => 'vvi', 'GSVIVG01018116001' => 'vvi', 'GSVIVG01018118001' => 'vvi', 'HanXRQChr03g0076211' => 'han', 'HanXRQChr03g0092431' => 'han', 'HanXRQChr03g0092441' => 'han', 'HanXRQChr03g0092591' => 'han', 'HanXRQChr03g0092671' => 'han', 'HanXRQChr03g0092681' => 'han', 'HanXRQChr03g0092691' => 'han', 'HanXRQChr03g0092701' => 'han', 'HanXRQChr03g0092721' => 'han', 'HanXRQChr03g0092731' => 'han', 'HanXRQChr04g0113681' => 'han', 'HanXRQChr10g0281371' => 'han', 'HanXRQChr11g0337141' => 'han', 'HanXRQChr13g0424521' => 'han', 'HanXRQChr13g0424531' => 'han', 'HanXRQChr13g0424541' => 'han', 'HanXRQChr16g0498221' => 'han', 'Haze_04377' => 'cav', 'Haze_11298' => 'cav', 'Haze_24547' => 'cav', 'Haze_24550' => 'cav', 'Haze_26587' => 'cav', 'Hma1.2p1_0650F.1_g195410' => 'hma', 'Hma1.2p1_0893F.1_g233470' => 'hma', 'HPP92_006508' => 'vpl', 'HPP92_024780' => 'vpl', 'Hund02688' => 'sun', 'Hund09380' => 'sun', 'Hund09381' => 'sun', 'Hund09832' => 'sun', 'Hund09833' => 'sun', 'Hund11351' => 'sun', 'Hund11513' => 'sun', 'Lalb_Chr06g0162591' => 'lal', 'Lalb_Chr06g0162601' => 'lal', 'Lalb_Chr06g0169321' => 'lal', 'Lalb_Chr09g0330951' => 'lal', 'Lalb_Chr16g0387631' => 'lal', 'Lalb_Chr21g0306241' => 'lal', 'Lalb_Chr25g0290051' => 'lal', 'Lalb_Chr25g0290061' => 'lal', 'Lalb_Chr25g0290071' => 'lal', 'Lj1g0003876' => 'lja', 'Lj1P1207T36' => 'lonja', 'Lj2C1156G12' => 'lonja', 'Lj3A793G39' => 'lonja', 'Lj3C580G2' => 'lonja', 'Lj3C780G2' => 'lonja', 'Lj3C780T4' => 'lonja', 'Lj3C793G9' => 'lonja', 'Lj4g0012960' => 'lja', 'Lj5g0021252' => 'lja', 'Lj5g0021484' => 'lja', 'Lj5g0024528' => 'lja', 'Lj6A399T12' => 'lonja', 'Lj6A656G65' => 'lonja', 'Lsat_1_v5_gn_3_125500' => 'lsa', 'Lsat_1_v5_gn_3_125540' => 'lsa', 'Lsat_1_v5_gn_5_72701' => 'lsa', 'Lsat_1_v5_gn_8_91560' => 'lsa', 'Lsat_1_v5_gn_9_9640' => 'lsa', 'Manes.01G200600' => 'mes', 'Manes.01G200700' => 'mes', 'Manes.03G168900' => 'mes', 'Manes.03G169000' => 'mes', 'Manes.05G085801' => 'mes', 'Manes.05G086200' => 'mes', 'Manes.15G036700' => 'mes', 'Manes.15G036900' => 'mes', 'Mapoly0004s0172' => 'mpo', 'Mapoly0023s0001' => 'mpo', 'Mapoly0142s0012' => 'mpo', 'MBI01_g32854_MAGBIO' => 'mbi', 'MBI11_g24427_MAGBIO' => 'mbi', 'MBI11_g47319_MAGBIO' => 'mbi', 'MCO01G433' => 'mco', 'MD00G1187800' => 'mdo', 'MD04G1226500' => 'mdo', 'MD05G1203900' => 'mdo', 'MD10G1191100' => 'mdo', 'MD12G1243500' => 'mdo', 'MD13G1207000' => 'mdo', 'MD13G1207100' => 'mdo', 'MD16G1208600' => 'mdo', 'Medtr1g050352' => 'mtr', 'Medtr1g070385' => 'mtr', 'Medtr1g070450' => 'mtr', 'Medtr1g075200' => 'mtr', 'Medtr1g075250' => 'mtr', 'Medtr1g075260' => 'mtr', 'Medtr1g475250' => 'mtr', 'Medtr4g075450' => 'mtr', 'Medtr7g096300' => 'mtr', 'Medtr8g105110' => 'mtr', 'MELO3C006470.2' => 'cme', 'MELO3C006471.2' => 'cme', 'MELO3C020772.2' => 'cme', 'MELO3C026780.2' => 'cme', 'MELO3C026781.2' => 'cme', 'Migut.D00390' => 'egut', 'Migut.G00435' => 'egut', 'Migut.G00436' => 'egut', 'Migut.G00718' => 'egut', 'MSTRG.21891' => 'ama', 'MSTRG.26910' => 'ama', 'MSTRG.4099' => 'ama', 'MSTRG.9925' => 'ama', 'Nitab4.5_0000165g0010' => 'nta', 'Nitab4.5_0000209g0180' => 'nta', 'Nitab4.5_0000244g0440' => 'nta', 'Nitab4.5_0000525g0220' => 'nta', 'Nitab4.5_0001597g0020' => 'nta', 'Nitab4.5_0001878g0040' => 'nta', 'Nitab4.5_0001878g0060' => 'nta', 'Nitab4.5_0002838g0100' => 'nta', 'Nitab4.5_0002838g0120' => 'nta', 'Nitab4.5_0004798g0030' => 'nta', 'Nitab4.5_0005420g0010' => 'nta', 'Nitab4.5_0005507g0010' => 'nta', 'Nitab4.5_0005574g0020' => 'nta', 'Nitab4.5_0005838g0010' => 'nta', 'Nitab4.5_0010580g0020' => 'nta', 'Nn1g02599' => 'nnu', 'Nn1g02608' => 'nnu', 'Nn3g17742' => 'nnu', 'Nn3g19534' => 'nnu', 'Nn3g19535' => 'nnu', 'Oeu008790.1' => 'oeu', 'Oeu008792.1' => 'oeu', 'Oeu032590.1' => 'oeu', 'Oeu035349.1' => 'oeu', 'Oeu049791.1' => 'oeu', 'Os01g0774500' => 'osa', 'Os03g0628800' => 'osa', 'Os03g0798600' => 'osa', 'Os05g0508800' => 'osa', 'Peaxi162Scf00036g02018' => 'pax', 'Peaxi162Scf00578g00032' => 'pax', 'Peaxi162Scf00578g00317' => 'pax', 'Peaxi162Scf00785g00114' => 'pax', 'Peaxi162Scf00813g00119' => 'pax', 'Peaxi162Scf00906g00227' => 'pax', 'PGR004G0875' => 'pgr', 'PGR004G2424' => 'pgr', 'PGR031G1239' => 'pgr', 'PGR031G2474' => 'pgr', 'PGR044G0423' => 'pgr', 'PGSC0003DMG400001128' => 'stu', 'PGSC0003DMG400007336' => 'stu', 'PGSC0003DMG400016318' => 'stu', 'PGSC0003DMG400016319' => 'stu', 'PGSC0003DMG400018074' => 'stu', 'Phvul.001G157700' => 'pvu', 'Phvul.002G148550' => 'pvu', 'Phvul.002G320200' => 'pvu', 'Phvul.003G089200' => 'pvu', 'Phvul.007G126000' => 'pvu', 'Phvul.007G126100' => 'pvu', 'Phvul.007G178000' => 'pvu', 'Phvul.007G178200' => 'pvu', 'Potri.002G043000' => 'ptr', 'Potri.002G043200' => 'ptr', 'Potri.003G123750' => 'ptr', 'Potri.005G055401' => 'ptr', 'Potri.005G219700' => 'ptr', 'Potri.005G220000' => 'ptr', 'Potri.008G161901' => 'ptr', 'Potri.008G162000' => 'ptr', 'Potri.008G162400' => 'ptr', 'Potri.010G076900' => 'ptr', 'Pp3c12_9180' => 'ppa', 'Pp3c13_19770' => 'ppa', 'Pp3c14_22950' => 'ppa', 'Pp3c16_12160' => 'ppa', 'Pp3c27_7820' => 'ppa', 'Pp3c2_3490' => 'ppa', 'Pp3c3_23700' => 'ppa', 'Pp3c3_36520' => 'ppa', 'Pp3c4_15250' => 'ppa', 'PRCOL_00007002' => 'pco', 'Prupe.1G030600' => 'ppe', 'Prupe.1G030700' => 'ppe', 'Prupe.6G345200' => 'ppe', 'Prupe.8G230300' => 'ppe', 'Prupe.8G230500' => 'ppe', 'Psat3g059600' => 'psa', 'Psat5g200920' => 'psa', 'Psat6g056440' => 'psa', 'Psat6g057360' => 'psa', 'Psat6g134120' => 'psa', 'Psat6g134160' => 'psa', 'Psat7g008640' => 'psa', 'Psat7g185240' => 'psa', 'PSO017G1330' => 'pso', 'PSO063G6097' => 'pso', 'PSO170G0835' => 'pso', 'PSO170G2499' => 'pso', 'PSO210G5058' => 'pso', 'PSO210G6154' => 'pso', 'PSO585G0031' => 'pso', 'PSO832G0264' => 'pso', 'PSO832G4288' => 'pso', 'QL03p027355' => 'qlo', 'QL03p027430' => 'qlo', 'QL04p081380' => 'qlo', 'QL06p015642' => 'qlo', 'QL06p015650' => 'qlo', 'QL06p015686' => 'qlo', 'QL12p042927' => 'qlo', 'QL93p1863_0035' => 'qlo', 'RcHm_v2.0_Chr3g0450581' => 'rch', 'RcHm_v2.0_Chr4g0390371' => 'rch', 'RcHm_v2.0_Chr4g0390381' => 'rch', 'RcHm_v2.0_Chr4g0390491' => 'rch', 'RcHm_v2.0_Chr4g0390501' => 'rch', 'RcHm_v2.0_Chr6g0289231' => 'rch', 'Rhsim04G0190400' => 'rsi', 'Rhsim04G0190500' => 'rsi', 'Rhsim04G0190600' => 'rsi', 'Rhsim13G0031400' => 'rsi', 'Rhsim13G0165600' => 'rsi', 'RhsimUnG0114600' => 'rsi', 'RhsimUnG0114700' => 'rsi', 'Sabra02G0034800' => 'sbr', 'Sabra02G0035100' => 'sbr', 'Sabra05G0168600' => 'sbr', 'Sabra05G0168800' => 'sbr', 'Sabra08G0123700' => 'sbr', 'Sabra10G0031900' => 'sbr', 'Sabra13G0039000' => 'sbr', 'SalBow2G0782' => 'sbo', 'SalBow2G1403' => 'sbo', 'SalBow4G0074' => 'sbo', 'SalBow4G2635' => 'sbo', 'SalBow5G3010' => 'sbo', 'Sc05g0000870' => 'sci', 'Sc05g0000890' => 'sci', 'Sc13g0005000' => 'sci', 'Sc13g0005030' => 'sci', 'Sc19g0003790' => 'sci', 'Sc19g0003800' => 'sci', 'Sed0003467' => 'sed', 'Sed0009355' => 'sed', 'Sed0009894' => 'sed', 'Sed0011972' => 'sed', 'Sed0021483' => 'sed', 'Sed0021750' => 'sed', 'Sed0026279' => 'sed', 'SEGI_05312' => 'sgi', 'SEGI_10112' => 'sgi', 'SEGI_15835' => 'sgi', 'SEGI_30386' => 'sgi', 'SEGI_34122' => 'sgi', 'SEGI_35063' => 'sgi', 'SGA_v2.0_scaffold101G29794' => 'sas', 'SGA_v2.0_scaffold1G00573' => 'sas', 'SGA_v2.0_scaffold79G25637' => 'sas', 'SGA_v2.0_scaffold88G27283' => 'sas', 'SGA_v2.0_scaffold88G27285' => 'sas', 'SGA_v2.0_scaffold88G27331' => 'sas', 'SHI09937' => 'shi', 'SMO119G0302' => 'smo', 'SMO137G0231' => 'smo', 'SMO367G1151' => 'smo', 'Solyc02g082000.3' => 'sly', 'Solyc06g031670.3' => 'sly', 'Solyc06g053810.3' => 'sly', 'Solyc07g025457.1' => 'sly', 'Solyc08g059740.1' => 'sly', 'Solyc08g059750.3' => 'sly', 'Solyc09g083370.3' => 'sly', 'Solyc12g038950.3' => 'sly', 'Sopen02g026630' => 'spe', 'Sopen06g018930' => 'spe', 'Sopen06g018940' => 'spe', 'Sopen08g009460' => 'spe', 'Sopen09g032290' => 'spe', 'Sp1g03080' => 'spa', 'Sp1g03090' => 'spa', 'Sp1g05480' => 'spa', 'Sp2g07860' => 'spa', 'Sp2g08430' => 'spa', 'Sp2g08440' => 'spa', 'Sp2g26200' => 'spa', 'Sp4g13170' => 'spa', 'Sp6g33840' => 'spa', 'SpUn1204_0010' => 'spa', 'TAR365G0908' => 'tar', 'TAR381G1270' => 'tar', 'TAR381G1651' => 'tar', 'TAR625G1131' => 'tar', 'TAR633G0962' => 'tar', 'TAR633G1729' => 'tar', 'TAR633G1864' => 'tar', 'TAR636G0221' => 'tar', 'TAR636G0314' => 'tar', 'TAR636G3202' => 'tar', 'THA.LOC104800805' => 'tha', 'THA.LOC104801096' => 'tha', 'THA.LOC104801555' => 'tha', 'THA.LOC104808491' => 'tha', 'THA.LOC104808595' => 'tha', 'THA.LOC104815985' => 'tha', 'THA.LOC104822250' => 'tha', 'THA.LOC104826071' => 'tha', 'Thecc.01G265200' => 'tca', 'Thecc.01G265300' => 'tca', 'Thecc.01G265700' => 'tca', 'Thecc.03G109100' => 'tca', 'Thecc.04G245900' => 'tca', 'Thecc.04G246000' => 'tca', 'Thhalv10003334m.g' => 'esa', 'Thhalv10005508m.g' => 'esa', 'Thhalv10005643m.g' => 'esa', 'Thhalv10007316m.g' => 'esa', 'Thhalv10009006m.g' => 'esa', 'Thhalv10009309m.g' => 'esa', 'Thhalv10014917m.g' => 'esa', 'Thhalv10014919m.g' => 'esa', 'Thhalv10015393m.g' => 'esa', 'Thhalv10016515m.g' => 'esa', 'Thhalv10029242m.g' => 'esa', 'TPR.G16654' => 'tpr', 'TPR.G20589' => 'tpr', 'TPR.G23029' => 'tpr', 'TPR.G27731' => 'tpr', 'TPR.G28889' => 'tpr', 'TPR.G28899' => 'tpr', 'TPR.G30846' => 'tpr', 'TPR.G5452' => 'tpr', 'TPR.G5713' => 'tpr', 'TPR.G9046' => 'tpr', 'TPR.G9061' => 'tpr', 'TWI09G1075' => 'twi', 'TWI12G0806' => 'twi', 'TWI18G0108' => 'twi', 'TWI53G1361' => 'twi', 'TWI73G0185' => 'twi', 'TWI73G0427' => 'twi', 'unitig_37.g12001' => 'ugi', 'unitig_747.g21660' => 'ugi', 'unitig_748.g7232' => 'ugi', 'unitig_748.g7315' => 'ugi', 'unitig_85.g27262' => 'ugi', 'unitig_92.g28220' => 'ugi', 'vmacro02632' => 'vma', 'vmacro08410' => 'vma', 'vmacro08411' => 'vma', 'vmacro15407' => 'vma', 'VMungo0251G3619' => 'vmu', 'VMungo0720G1204' => 'vmu', 'VMungo0720G1918' => 'vmu', 'VMungo0720G2387' => 'vmu', 'VMungo0720G2961' => 'vmu', 'VMungo1215G2154' => 'vmu', 'VMungo1383G2411' => 'vmu', 'Zm00001eb051130' => 'zma', 'Zm00001eb116830' => 'zma', 'Zm00001eb116850' => 'zma', 'Zm00001eb151740' => 'zma', 'Zm00001eb292360' => 'zma', 'Zm00001eb301640' => 'zma' ) $gf_id = 'HOM05D000856' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000856' ) $data_identifier = 'HOM05D000856' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 13, 'ath' => (int) 10, 'atr' => (int) 1, 'acertr' => (int) 8, 'cqu' => (int) 6, 'bca' => (int) 21, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 11, 'car' => (int) 9, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 8, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 5, 'fan' => (int) 16, 'fve' => (int) 6, 'gma' => (int) 11, 'ghi' => (int) 19, 'gra' => (int) 9, 'vvi' => (int) 7, 'han' => (int) 17, 'cav' => (int) 5, 'hma' => (int) 2, 'vpl' => (int) 2, 'sun' => (int) 7, 'lal' => (int) 9, 'lja' => (int) 5, 'lonja' => (int) 9, 'lsa' => (int) 5, 'mes' => (int) 8, 'mpo' => (int) 3, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 10, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 15, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 9, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 9, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 6, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 5, 'spa' => (int) 10, 'tar' => (int) 10, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 11, 'tpr' => (int) 11, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 4, 'vmu' => (int) 7, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb301640' $species_info = array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ) $local_species = 'mes' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000856', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p00010' => 'bna', 'A03p04160' => 'bna', 'A03p17160' => 'bna', 'A04p23370' => 'bna', 'A05p14860' => 'bna', 'A08p37020' => 'bna', 'A09p08050' => 'bna', 'A09p66800' => 'bna', 'A09p67940' => 'bna', 'A10p02680' => 'bna', 'A10p05320' => 'bna', 'Aa31LG1G20560' => 'aar', 'Aa31LG1G20610' => 'aar', 'Aa31LG1G7810' => 'aar', 'Aa31LG5G3590' => 'aar', 'Aa31LG5G6140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3819' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4683' => 'aag', 'Actinidia04480' => 'ach', 'Actinidia05466' => 'ach', 'Actinidia08445' => 'ach', 'Actinidia21170' => 'ach', 'Actinidia24812' => 'ach', 'Actinidia24951' => 'ach', 'Actinidia40088' => 'ach', 'Ah.02g111660' => 'amhyb', 'Ah.11g048900' => 'amhyb', 'Ah.11g049910' => 'amhyb', 'AL1G13870' => 'aly', 'AL1G13880' => 'aly', 'AL1G16760' => 'aly', 'AL390U10020' => 'aly', 'AL4G25520' => 'aly', 'AL6G19890' => 'aly', 'AL6G19900' => 'aly', 'AL6G19910' => 'aly', 'AL8G40100' => 'aly', 'Aqoxy2G03562' => 'aox', 'Aqoxy5G00316' => 'aox', 'Aqoxy5G00926' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1628KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1H403S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2FU6SJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.882I6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8YRY2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YN1SN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AF70II' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZA8L1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F916KL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHRD8H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KTZ8QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S22EMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8M29T' => 'arhy', 'AT1G04270' => 'ath', 'AT1G04280' => 'ath', 'AT1G06750' => 'ath', 'AT1G33850' => 'ath', 'AT2G30630' => 'ath', 'AT5G09490' => 'ath', 'AT5G09500' => 'ath', 'AT5G09510' => 'ath', 'AT5G43640' => 'ath', 'AT5G63070' => 'ath', 'ATR0605G315' => 'atr', 'Atru.chr11.175' => 'acertr', 'Atru.chr11.653' => 'acertr', 'Atru.chr3.1616' => 'acertr', 'Atru.chr4.2230' => 'acertr', 'Atru.chr4.2232' => 'acertr', 'Atru.chr5.1598' => 'acertr', 'Atru.chr5.1600' => 'acertr', 'Atru.chr5.2188' => 'acertr', 'AUR62008326' => 'cqu', 'AUR62011922' => 'cqu', 'AUR62011924' => 'cqu', 'AUR62021771' => 'cqu', 'AUR62032237' => 'cqu', 'AUR62032240' => 'cqu', 'BcaB01g05572' => 'bca', 'BcaB02g10337' => 'bca', 'BcaB04g19944' => 'bca', 'BcaB05g21548' => 'bca', 'BcaB05g21549' => 'bca', 'BcaB05g23227' => 'bca', 'BcaB06g26256' => 'bca', 'BcaB06g26257' => 'bca', 'BcaB06g28379' => 'bca', 'BcaC02g11159' => 'bca', 'BcaC03g13258' => 'bca', 'BcaC03g13259' => 'bca', 'BcaC05g24456' => 'bca', 'BcaC05g24457' => 'bca', 'BcaC07g36922' => 'bca', 'BcaC07g36923' => 'bca', 'BcaC07g42050' => 'bca', 'BcaC07g42176' => 'bca', 'BcaC07g42195' => 'bca', 'BcaC07g42196' => 'bca', 'BcaNung06674' => 'bca', 'BolC2t06351H' => 'bol', 'BolC2t06352H' => 'bol', 'BolC3t12993H' => 'bol', 'BolC4t23525H' => 'bol', 'BolC4t27475H' => 'bol', 'BolC5t29025H' => 'bol', 'BolC5t29026H' => 'bol', 'BolC8t46898H' => 'bol', 'BolC8t46899H' => 'bol', 'BolC8t52630H' => 'bol', 'BolC8t52765H' => 'bol', 'BolC9t53824H' => 'bol', 'BraA03t09760Z' => 'bra', 'BraA03t10990Z' => 'bra', 'BraA05t20413Z' => 'bra', 'BraA08t35602Z' => 'bra', 'BraA09t36458Z' => 'bra', 'BraA09t42018Z' => 'bra', 'BraA09t42129Z' => 'bra', 'BraA10t42536Z' => 'bra', 'BraA10t42537Z' => 'bra', 'C01p10690' => 'bna', 'C02p03890' => 'bna', 'C02p03900' => 'bna', 'C03p04620' => 'bna', 'C04p19870' => 'bna', 'C04p59670' => 'bna', 'C05p02460' => 'bna', 'C05p02470' => 'bna', 'C08p00980' => 'bna', 'C08p00990' => 'bna', 'C08p51030' => 'bna', 'C08p52360' => 'bna', 'C09p09120' => 'bna', 'CAN.G19.15' => 'can', 'CAN.G251.10' => 'can', 'CAN.G251.9' => 'can', 'CAN.G398.24' => 'can', 'CAN.G410.32' => 'can', 'CAN.G881.2' => 'can', 'CANSAT01G3025' => 'cansat', 'CANSAT78G1211' => 'cansat', 'CANSAT78G1218' => 'cansat', 'CANSAT78G1521' => 'cansat', 'CANSAT78G1670' => 'cansat', 'CARHR003600' => 'chi', 'CARHR003610' => 'chi', 'CARHR006290' => 'chi', 'CARHR006430' => 'chi', 'CARHR124110' => 'chi', 'CARHR203870' => 'chi', 'CARHR203880' => 'chi', 'CARHR203890' => 'chi', 'CARHR276880' => 'chi', 'Carub.0001s0346' => 'cru', 'Carub.0001s0347' => 'cru', 'Carub.0001s0607' => 'cru', 'Carub.0003s2768' => 'cru', 'Carub.0003s2769' => 'cru', 'Carub.0004s1178' => 'cru', 'Carub.0006s0806' => 'cru', 'Carub.0006s0807' => 'cru', 'Carub.0006s0808' => 'cru', 'Carub.0008s0501' => 'cru', 'Carub.0008s2379' => 'cru', 'Ca_08655_v3' => 'car', 'Ca_08922_v3' => 'car', 'Ca_08923_v3' => 'car', 'Ca_09119_v3' => 'car', 'Ca_09703_v3' => 'car', 'Ca_09705_v3' => 'car', 'Ca_09835_v3' => 'car', 'Ca_26403_v3' => 'car', 'Ca_30719_v3' => 'car', 'CBR_g17958' => 'cbr', 'CBR_g40516' => 'cbr', 'Cc00_g05350' => 'ccan', 'Cc01_g18690' => 'ccan', 'Cc03_g04830' => 'ccan', 'Cc03_g04850' => 'ccan', 'CDE02G4469' => 'cde', 'CDE06G0883' => 'cde', 'CDE06G1295' => 'cde', 'CDE06G1390' => 'cde', 'CDE07G0584' => 'cde', 'CDE07G1084' => 'cde', 'CDE08G1259' => 'cde', 'Cfa002341' => 'cfa', 'Cfa024337' => 'cfa', 'Ciclev10004749m.g' => 'ccl', 'Ciclev10006127m.g' => 'ccl', 'Ciclev10019720m.g' => 'ccl', 'Ciclev10022652m.g' => 'ccl', 'CiPaw.01G190400' => 'cil', 'CiPaw.01G190500' => 'cil', 'CiPaw.02G116400' => 'cil', 'CiPaw.02G116500' => 'cil', 'CiPaw.04G183000' => 'cil', 'CiPaw.04G183300' => 'cil', 'ClCG05G004610' => 'cla', 'ClCG05G004620' => 'cla', 'ClCG06G006730' => 'cla', 'ClCG06G006740' => 'cla', 'ClCG11G003690' => 'cla', 'COL.COLO4_08276' => 'col', 'COL.COLO4_08277' => 'col', 'COL.COLO4_15787' => 'col', 'COL.COLO4_15789' => 'col', 'Cpa.g.c44815' => 'cpa', 'Cpa.g.sc52.144' => 'cpa', 'Cpa.g.sc58.46' => 'cpa', 'Cpa.g.sc58.47' => 'cpa', 'Cre08.g360900' => 'cre', 'CsaV3_2G013030' => 'csa', 'CsaV3_2G013050' => 'csa', 'CsaV3_2G015620' => 'csa', 'CsaV3_3G012590' => 'csa', 'CsaV3_3G012600' => 'csa', 'CSS0001641' => 'camsi', 'CSS0008310' => 'camsi', 'CSS0013011' => 'camsi', 'CSS0017147' => 'camsi', 'CSS0022970' => 'camsi', 'CSS0025655' => 'camsi', 'CSS0028665' => 'camsi', 'CSS0029117' => 'camsi', 'CSS0032024' => 'camsi', 'CSS0039681' => 'camsi', 'CSS0046516' => 'camsi', 'CSS0050307' => 'camsi', 'DCAR_005871' => 'dca', 'DCAR_007342' => 'dca', 'DCAR_024228' => 'dca', 'DCAR_027277' => 'dca', 'DCAR_030718' => 'dca', 'Dinv20287' => 'din', 'Dinv22461' => 'din', 'Dinv22464' => 'din', 'Dinv29912' => 'din', 'Dinv29913' => 'din', 'Dinv34580' => 'din', 'Dinv34582' => 'din', 'Dinv44632' => 'din', 'Duzib052G0266' => 'dzi', 'Duzib133G0907' => 'dzi', 'Duzib133G1034' => 'dzi', 'Duzib138G0207' => 'dzi', 'Duzib138G0491' => 'dzi', 'Duzib151G0812' => 'dzi', 'Duzib151G1166' => 'dzi', 'Duzib168G0192' => 'dzi', 'Duzib211G0077' => 'dzi', 'Duzib212G0429' => 'dzi', 'Duzib212G0472' => 'dzi', 'ECA233G2617' => 'eca', 'ECA236G4188' => 'eca', 'ECA240G0936' => 'eca', 'ECA240G1129' => 'eca', 'ECA247G0623' => 'eca', 'EL10Ac5g10451' => 'bvu', 'EL10Ac5g10453' => 'bvu', 'EL10Ac5g10894' => 'bvu', 'Eucgr.H00192' => 'egr', 'Eucgr.H00193' => 'egr', 'Eucgr.H00194' => 'egr', 'Eucgr.J01562' => 'egr', 'Eucgr.K03301' => 'egr', 'FAN02G0632' => 'fan', 'FAN05G5378' => 'fan', 'FAN09G3247' => 'fan', 'FAN12G0435' => 'fan', 'FAN12G2426' => 'fan', 'FAN14G1707' => 'fan', 'FAN14G4725' => 'fan', 'FAN15G2071' => 'fan', 'FAN17G3065' => 'fan', 'FAN19G1376' => 'fan', 'FAN20G0354' => 'fan', 'FAN20G2429' => 'fan', 'FAN20G2658' => 'fan', 'FAN24G2343' => 'fan', 'FAN27G2362' => 'fan', 'FAN28G1765' => 'fan', 'FvH4_1g16020' => 'fve', 'FvH4_2g04890' => 'fve', 'FvH4_2g22270' => 'fve', 'FvH4_4g02630' => 'fve', 'FvH4_4g02640' => 'fve', 'FvH4_6g02650' => 'fve', 'Glyma.02G140600' => 'gma', 'Glyma.03G159900' => 'gma', 'Glyma.05G234800' => 'gma', 'Glyma.07G269600' => 'gma', 'Glyma.08G042300' => 'gma', 'Glyma.10G033500' => 'gma', 'Glyma.10G185200' => 'gma', 'Glyma.17G004300' => 'gma', 'Glyma.19G161900' => 'gma', 'Glyma.20G205100' => 'gma', 'Glyma.20G205200' => 'gma', 'Gohir.A01G139101' => 'ghi', 'Gohir.A02G035600' => 'ghi', 'Gohir.A02G117901' => 'ghi', 'Gohir.A07G210100' => 'ghi', 'Gohir.A07G210200' => 'ghi', 'Gohir.A08G061100' => 'ghi', 'Gohir.A09G223000' => 'ghi', 'Gohir.A09G223100' => 'ghi', 'Gohir.A10G113900' => 'ghi', 'Gohir.A10G114000' => 'ghi', 'Gohir.D02G042300' => 'ghi', 'Gohir.D07G216100' => 'ghi', 'Gohir.D07G216200' => 'ghi', 'Gohir.D08G070400' => 'ghi', 'Gohir.D09G225000' => 'ghi', 'Gohir.D09G225100' => 'ghi', 'Gohir.D10G152300' => 'ghi', 'Gohir.D10G153200' => 'ghi', 'Gohir.D11G133701' => 'ghi', 'Gorai.004G074100' => 'gra', 'Gorai.005G046800' => 'gra', 'Gorai.006G246500' => 'gra', 'Gorai.006G246600' => 'gra', 'Gorai.007G142900' => 'gra', 'Gorai.011G171000' => 'gra', 'Gorai.011G171100' => 'gra', 'Gorai.013G104300' => 'gra', 'Gorai.013G104400' => 'gra', 'GSVIVG01000754001' => 'vvi', 'GSVIVG01000756001' => 'vvi', 'GSVIVG01010903001' => 'vvi', 'GSVIVG01017623001' => 'vvi', 'GSVIVG01018113001' => 'vvi', 'GSVIVG01018116001' => 'vvi', 'GSVIVG01018118001' => 'vvi', 'HanXRQChr03g0076211' => 'han', 'HanXRQChr03g0092431' => 'han', 'HanXRQChr03g0092441' => 'han', 'HanXRQChr03g0092591' => 'han', 'HanXRQChr03g0092671' => 'han', 'HanXRQChr03g0092681' => 'han', 'HanXRQChr03g0092691' => 'han', 'HanXRQChr03g0092701' => 'han', 'HanXRQChr03g0092721' => 'han', 'HanXRQChr03g0092731' => 'han', 'HanXRQChr04g0113681' => 'han', 'HanXRQChr10g0281371' => 'han', 'HanXRQChr11g0337141' => 'han', 'HanXRQChr13g0424521' => 'han', 'HanXRQChr13g0424531' => 'han', 'HanXRQChr13g0424541' => 'han', 'HanXRQChr16g0498221' => 'han', 'Haze_04377' => 'cav', 'Haze_11298' => 'cav', 'Haze_24547' => 'cav', 'Haze_24550' => 'cav', 'Haze_26587' => 'cav', 'Hma1.2p1_0650F.1_g195410' => 'hma', 'Hma1.2p1_0893F.1_g233470' => 'hma', 'HPP92_006508' => 'vpl', 'HPP92_024780' => 'vpl', 'Hund02688' => 'sun', 'Hund09380' => 'sun', 'Hund09381' => 'sun', 'Hund09832' => 'sun', 'Hund09833' => 'sun', 'Hund11351' => 'sun', 'Hund11513' => 'sun', 'Lalb_Chr06g0162591' => 'lal', 'Lalb_Chr06g0162601' => 'lal', 'Lalb_Chr06g0169321' => 'lal', 'Lalb_Chr09g0330951' => 'lal', 'Lalb_Chr16g0387631' => 'lal', 'Lalb_Chr21g0306241' => 'lal', 'Lalb_Chr25g0290051' => 'lal', 'Lalb_Chr25g0290061' => 'lal', 'Lalb_Chr25g0290071' => 'lal', 'Lj1g0003876' => 'lja', 'Lj1P1207T36' => 'lonja', 'Lj2C1156G12' => 'lonja', 'Lj3A793G39' => 'lonja', 'Lj3C580G2' => 'lonja', 'Lj3C780G2' => 'lonja', 'Lj3C780T4' => 'lonja', 'Lj3C793G9' => 'lonja', 'Lj4g0012960' => 'lja', 'Lj5g0021252' => 'lja', 'Lj5g0021484' => 'lja', 'Lj5g0024528' => 'lja', 'Lj6A399T12' => 'lonja', 'Lj6A656G65' => 'lonja', 'Lsat_1_v5_gn_3_125500' => 'lsa', 'Lsat_1_v5_gn_3_125540' => 'lsa', 'Lsat_1_v5_gn_5_72701' => 'lsa', 'Lsat_1_v5_gn_8_91560' => 'lsa', 'Lsat_1_v5_gn_9_9640' => 'lsa', 'Manes.01G200600' => 'mes', 'Manes.01G200700' => 'mes', 'Manes.03G168900' => 'mes', 'Manes.03G169000' => 'mes', 'Manes.05G085801' => 'mes', 'Manes.05G086200' => 'mes', 'Manes.15G036700' => 'mes', 'Manes.15G036900' => 'mes', 'Mapoly0004s0172' => 'mpo', 'Mapoly0023s0001' => 'mpo', 'Mapoly0142s0012' => 'mpo', 'MBI01_g32854_MAGBIO' => 'mbi', 'MBI11_g24427_MAGBIO' => 'mbi', 'MBI11_g47319_MAGBIO' => 'mbi', 'MCO01G433' => 'mco', 'MD00G1187800' => 'mdo', 'MD04G1226500' => 'mdo', 'MD05G1203900' => 'mdo', 'MD10G1191100' => 'mdo', 'MD12G1243500' => 'mdo', 'MD13G1207000' => 'mdo', 'MD13G1207100' => 'mdo', 'MD16G1208600' => 'mdo', 'Medtr1g050352' => 'mtr', 'Medtr1g070385' => 'mtr', 'Medtr1g070450' => 'mtr', 'Medtr1g075200' => 'mtr', 'Medtr1g075250' => 'mtr', 'Medtr1g075260' => 'mtr', 'Medtr1g475250' => 'mtr', 'Medtr4g075450' => 'mtr', 'Medtr7g096300' => 'mtr', 'Medtr8g105110' => 'mtr', 'MELO3C006470.2' => 'cme', 'MELO3C006471.2' => 'cme', 'MELO3C020772.2' => 'cme', 'MELO3C026780.2' => 'cme', 'MELO3C026781.2' => 'cme', 'Migut.D00390' => 'egut', 'Migut.G00435' => 'egut', 'Migut.G00436' => 'egut', 'Migut.G00718' => 'egut', 'MSTRG.21891' => 'ama', 'MSTRG.26910' => 'ama', 'MSTRG.4099' => 'ama', 'MSTRG.9925' => 'ama', 'Nitab4.5_0000165g0010' => 'nta', 'Nitab4.5_0000209g0180' => 'nta', 'Nitab4.5_0000244g0440' => 'nta', 'Nitab4.5_0000525g0220' => 'nta', 'Nitab4.5_0001597g0020' => 'nta', 'Nitab4.5_0001878g0040' => 'nta', 'Nitab4.5_0001878g0060' => 'nta', 'Nitab4.5_0002838g0100' => 'nta', 'Nitab4.5_0002838g0120' => 'nta', 'Nitab4.5_0004798g0030' => 'nta', 'Nitab4.5_0005420g0010' => 'nta', 'Nitab4.5_0005507g0010' => 'nta', 'Nitab4.5_0005574g0020' => 'nta', 'Nitab4.5_0005838g0010' => 'nta', 'Nitab4.5_0010580g0020' => 'nta', 'Nn1g02599' => 'nnu', 'Nn1g02608' => 'nnu', 'Nn3g17742' => 'nnu', 'Nn3g19534' => 'nnu', 'Nn3g19535' => 'nnu', 'Oeu008790.1' => 'oeu', 'Oeu008792.1' => 'oeu', 'Oeu032590.1' => 'oeu', 'Oeu035349.1' => 'oeu', 'Oeu049791.1' => 'oeu', 'Os01g0774500' => 'osa', 'Os03g0628800' => 'osa', 'Os03g0798600' => 'osa', 'Os05g0508800' => 'osa', 'Peaxi162Scf00036g02018' => 'pax', 'Peaxi162Scf00578g00032' => 'pax', 'Peaxi162Scf00578g00317' => 'pax', 'Peaxi162Scf00785g00114' => 'pax', 'Peaxi162Scf00813g00119' => 'pax', 'Peaxi162Scf00906g00227' => 'pax', 'PGR004G0875' => 'pgr', 'PGR004G2424' => 'pgr', 'PGR031G1239' => 'pgr', 'PGR031G2474' => 'pgr', 'PGR044G0423' => 'pgr', 'PGSC0003DMG400001128' => 'stu', 'PGSC0003DMG400007336' => 'stu', 'PGSC0003DMG400016318' => 'stu', 'PGSC0003DMG400016319' => 'stu', 'PGSC0003DMG400018074' => 'stu', 'Phvul.001G157700' => 'pvu', 'Phvul.002G148550' => 'pvu', 'Phvul.002G320200' => 'pvu', 'Phvul.003G089200' => 'pvu', 'Phvul.007G126000' => 'pvu', 'Phvul.007G126100' => 'pvu', 'Phvul.007G178000' => 'pvu', 'Phvul.007G178200' => 'pvu', 'Potri.002G043000' => 'ptr', 'Potri.002G043200' => 'ptr', 'Potri.003G123750' => 'ptr', 'Potri.005G055401' => 'ptr', 'Potri.005G219700' => 'ptr', 'Potri.005G220000' => 'ptr', 'Potri.008G161901' => 'ptr', 'Potri.008G162000' => 'ptr', 'Potri.008G162400' => 'ptr', 'Potri.010G076900' => 'ptr', 'Pp3c12_9180' => 'ppa', 'Pp3c13_19770' => 'ppa', 'Pp3c14_22950' => 'ppa', 'Pp3c16_12160' => 'ppa', 'Pp3c27_7820' => 'ppa', 'Pp3c2_3490' => 'ppa', 'Pp3c3_23700' => 'ppa', 'Pp3c3_36520' => 'ppa', 'Pp3c4_15250' => 'ppa', 'PRCOL_00007002' => 'pco', 'Prupe.1G030600' => 'ppe', 'Prupe.1G030700' => 'ppe', 'Prupe.6G345200' => 'ppe', 'Prupe.8G230300' => 'ppe', 'Prupe.8G230500' => 'ppe', 'Psat3g059600' => 'psa', 'Psat5g200920' => 'psa', 'Psat6g056440' => 'psa', 'Psat6g057360' => 'psa', 'Psat6g134120' => 'psa', 'Psat6g134160' => 'psa', 'Psat7g008640' => 'psa', 'Psat7g185240' => 'psa', 'PSO017G1330' => 'pso', 'PSO063G6097' => 'pso', 'PSO170G0835' => 'pso', 'PSO170G2499' => 'pso', 'PSO210G5058' => 'pso', 'PSO210G6154' => 'pso', 'PSO585G0031' => 'pso', 'PSO832G0264' => 'pso', 'PSO832G4288' => 'pso', 'QL03p027355' => 'qlo', 'QL03p027430' => 'qlo', 'QL04p081380' => 'qlo', 'QL06p015642' => 'qlo', 'QL06p015650' => 'qlo', 'QL06p015686' => 'qlo', 'QL12p042927' => 'qlo', 'QL93p1863_0035' => 'qlo', 'RcHm_v2.0_Chr3g0450581' => 'rch', 'RcHm_v2.0_Chr4g0390371' => 'rch', 'RcHm_v2.0_Chr4g0390381' => 'rch', 'RcHm_v2.0_Chr4g0390491' => 'rch', 'RcHm_v2.0_Chr4g0390501' => 'rch', 'RcHm_v2.0_Chr6g0289231' => 'rch', 'Rhsim04G0190400' => 'rsi', 'Rhsim04G0190500' => 'rsi', 'Rhsim04G0190600' => 'rsi', 'Rhsim13G0031400' => 'rsi', 'Rhsim13G0165600' => 'rsi', 'RhsimUnG0114600' => 'rsi', 'RhsimUnG0114700' => 'rsi', 'Sabra02G0034800' => 'sbr', 'Sabra02G0035100' => 'sbr', 'Sabra05G0168600' => 'sbr', 'Sabra05G0168800' => 'sbr', 'Sabra08G0123700' => 'sbr', 'Sabra10G0031900' => 'sbr', 'Sabra13G0039000' => 'sbr', 'SalBow2G0782' => 'sbo', 'SalBow2G1403' => 'sbo', 'SalBow4G0074' => 'sbo', 'SalBow4G2635' => 'sbo', 'SalBow5G3010' => 'sbo', 'Sc05g0000870' => 'sci', 'Sc05g0000890' => 'sci', 'Sc13g0005000' => 'sci', 'Sc13g0005030' => 'sci', 'Sc19g0003790' => 'sci', 'Sc19g0003800' => 'sci', 'Sed0003467' => 'sed', 'Sed0009355' => 'sed', 'Sed0009894' => 'sed', 'Sed0011972' => 'sed', 'Sed0021483' => 'sed', 'Sed0021750' => 'sed', 'Sed0026279' => 'sed', 'SEGI_05312' => 'sgi', 'SEGI_10112' => 'sgi', 'SEGI_15835' => 'sgi', 'SEGI_30386' => 'sgi', 'SEGI_34122' => 'sgi', 'SEGI_35063' => 'sgi', 'SGA_v2.0_scaffold101G29794' => 'sas', 'SGA_v2.0_scaffold1G00573' => 'sas', 'SGA_v2.0_scaffold79G25637' => 'sas', 'SGA_v2.0_scaffold88G27283' => 'sas', 'SGA_v2.0_scaffold88G27285' => 'sas', 'SGA_v2.0_scaffold88G27331' => 'sas', 'SHI09937' => 'shi', 'SMO119G0302' => 'smo', 'SMO137G0231' => 'smo', 'SMO367G1151' => 'smo', 'Solyc02g082000.3' => 'sly', 'Solyc06g031670.3' => 'sly', 'Solyc06g053810.3' => 'sly', 'Solyc07g025457.1' => 'sly', 'Solyc08g059740.1' => 'sly', 'Solyc08g059750.3' => 'sly', 'Solyc09g083370.3' => 'sly', 'Solyc12g038950.3' => 'sly', 'Sopen02g026630' => 'spe', 'Sopen06g018930' => 'spe', 'Sopen06g018940' => 'spe', 'Sopen08g009460' => 'spe', 'Sopen09g032290' => 'spe', 'Sp1g03080' => 'spa', 'Sp1g03090' => 'spa', 'Sp1g05480' => 'spa', 'Sp2g07860' => 'spa', 'Sp2g08430' => 'spa', 'Sp2g08440' => 'spa', 'Sp2g26200' => 'spa', 'Sp4g13170' => 'spa', 'Sp6g33840' => 'spa', 'SpUn1204_0010' => 'spa', 'TAR365G0908' => 'tar', 'TAR381G1270' => 'tar', 'TAR381G1651' => 'tar', 'TAR625G1131' => 'tar', 'TAR633G0962' => 'tar', 'TAR633G1729' => 'tar', 'TAR633G1864' => 'tar', 'TAR636G0221' => 'tar', 'TAR636G0314' => 'tar', 'TAR636G3202' => 'tar', 'THA.LOC104800805' => 'tha', 'THA.LOC104801096' => 'tha', 'THA.LOC104801555' => 'tha', 'THA.LOC104808491' => 'tha', 'THA.LOC104808595' => 'tha', 'THA.LOC104815985' => 'tha', 'THA.LOC104822250' => 'tha', 'THA.LOC104826071' => 'tha', 'Thecc.01G265200' => 'tca', 'Thecc.01G265300' => 'tca', 'Thecc.01G265700' => 'tca', 'Thecc.03G109100' => 'tca', 'Thecc.04G245900' => 'tca', 'Thecc.04G246000' => 'tca', 'Thhalv10003334m.g' => 'esa', 'Thhalv10005508m.g' => 'esa', 'Thhalv10005643m.g' => 'esa', 'Thhalv10007316m.g' => 'esa', 'Thhalv10009006m.g' => 'esa', 'Thhalv10009309m.g' => 'esa', 'Thhalv10014917m.g' => 'esa', 'Thhalv10014919m.g' => 'esa', 'Thhalv10015393m.g' => 'esa', 'Thhalv10016515m.g' => 'esa', 'Thhalv10029242m.g' => 'esa', 'TPR.G16654' => 'tpr', 'TPR.G20589' => 'tpr', 'TPR.G23029' => 'tpr', 'TPR.G27731' => 'tpr', 'TPR.G28889' => 'tpr', 'TPR.G28899' => 'tpr', 'TPR.G30846' => 'tpr', 'TPR.G5452' => 'tpr', 'TPR.G5713' => 'tpr', 'TPR.G9046' => 'tpr', 'TPR.G9061' => 'tpr', 'TWI09G1075' => 'twi', 'TWI12G0806' => 'twi', 'TWI18G0108' => 'twi', 'TWI53G1361' => 'twi', 'TWI73G0185' => 'twi', 'TWI73G0427' => 'twi', 'unitig_37.g12001' => 'ugi', 'unitig_747.g21660' => 'ugi', 'unitig_748.g7232' => 'ugi', 'unitig_748.g7315' => 'ugi', 'unitig_85.g27262' => 'ugi', 'unitig_92.g28220' => 'ugi', 'vmacro02632' => 'vma', 'vmacro08410' => 'vma', 'vmacro08411' => 'vma', 'vmacro15407' => 'vma', 'VMungo0251G3619' => 'vmu', 'VMungo0720G1204' => 'vmu', 'VMungo0720G1918' => 'vmu', 'VMungo0720G2387' => 'vmu', 'VMungo0720G2961' => 'vmu', 'VMungo1215G2154' => 'vmu', 'VMungo1383G2411' => 'vmu', 'Zm00001eb051130' => 'zma', 'Zm00001eb116830' => 'zma', 'Zm00001eb116850' => 'zma', 'Zm00001eb151740' => 'zma', 'Zm00001eb292360' => 'zma', 'Zm00001eb301640' => 'zma' ), 'gf_id' => 'HOM05D000856', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000856' ), 'data_identifier' => 'HOM05D000856', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000856', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p00010' => 'bna', 'A03p04160' => 'bna', 'A03p17160' => 'bna', 'A04p23370' => 'bna', 'A05p14860' => 'bna', 'A08p37020' => 'bna', 'A09p08050' => 'bna', 'A09p66800' => 'bna', 'A09p67940' => 'bna', 'A10p02680' => 'bna', 'A10p05320' => 'bna', 'Aa31LG1G20560' => 'aar', 'Aa31LG1G20610' => 'aar', 'Aa31LG1G7810' => 'aar', 'Aa31LG5G3590' => 'aar', 'Aa31LG5G6140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3819' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4683' => 'aag', 'Actinidia04480' => 'ach', 'Actinidia05466' => 'ach', 'Actinidia08445' => 'ach', 'Actinidia21170' => 'ach', 'Actinidia24812' => 'ach', 'Actinidia24951' => 'ach', 'Actinidia40088' => 'ach', 'Ah.02g111660' => 'amhyb', 'Ah.11g048900' => 'amhyb', 'Ah.11g049910' => 'amhyb', 'AL1G13870' => 'aly', 'AL1G13880' => 'aly', 'AL1G16760' => 'aly', 'AL390U10020' => 'aly', 'AL4G25520' => 'aly', 'AL6G19890' => 'aly', 'AL6G19900' => 'aly', 'AL6G19910' => 'aly', 'AL8G40100' => 'aly', 'Aqoxy2G03562' => 'aox', 'Aqoxy5G00316' => 'aox', 'Aqoxy5G00926' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1628KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1H403S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2FU6SJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.882I6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8YRY2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YN1SN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AF70II' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZA8L1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F916KL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHRD8H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KTZ8QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S22EMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8M29T' => 'arhy', 'AT1G04270' => 'ath', 'AT1G04280' => 'ath', 'AT1G06750' => 'ath', 'AT1G33850' => 'ath', 'AT2G30630' => 'ath', 'AT5G09490' => 'ath', 'AT5G09500' => 'ath', 'AT5G09510' => 'ath', 'AT5G43640' => 'ath', 'AT5G63070' => 'ath', 'ATR0605G315' => 'atr', 'Atru.chr11.175' => 'acertr', 'Atru.chr11.653' => 'acertr', 'Atru.chr3.1616' => 'acertr', 'Atru.chr4.2230' => 'acertr', 'Atru.chr4.2232' => 'acertr', 'Atru.chr5.1598' => 'acertr', 'Atru.chr5.1600' => 'acertr', 'Atru.chr5.2188' => 'acertr', 'AUR62008326' => 'cqu', 'AUR62011922' => 'cqu', 'AUR62011924' => 'cqu', 'AUR62021771' => 'cqu', 'AUR62032237' => 'cqu', 'AUR62032240' => 'cqu', 'BcaB01g05572' => 'bca', 'BcaB02g10337' => 'bca', 'BcaB04g19944' => 'bca', 'BcaB05g21548' => 'bca', 'BcaB05g21549' => 'bca', 'BcaB05g23227' => 'bca', 'BcaB06g26256' => 'bca', 'BcaB06g26257' => 'bca', 'BcaB06g28379' => 'bca', 'BcaC02g11159' => 'bca', 'BcaC03g13258' => 'bca', 'BcaC03g13259' => 'bca', 'BcaC05g24456' => 'bca', 'BcaC05g24457' => 'bca', 'BcaC07g36922' => 'bca', 'BcaC07g36923' => 'bca', 'BcaC07g42050' => 'bca', 'BcaC07g42176' => 'bca', 'BcaC07g42195' => 'bca', 'BcaC07g42196' => 'bca', 'BcaNung06674' => 'bca', 'BolC2t06351H' => 'bol', 'BolC2t06352H' => 'bol', 'BolC3t12993H' => 'bol', 'BolC4t23525H' => 'bol', 'BolC4t27475H' => 'bol', 'BolC5t29025H' => 'bol', 'BolC5t29026H' => 'bol', 'BolC8t46898H' => 'bol', 'BolC8t46899H' => 'bol', 'BolC8t52630H' => 'bol', 'BolC8t52765H' => 'bol', 'BolC9t53824H' => 'bol', 'BraA03t09760Z' => 'bra', 'BraA03t10990Z' => 'bra', 'BraA05t20413Z' => 'bra', 'BraA08t35602Z' => 'bra', 'BraA09t36458Z' => 'bra', 'BraA09t42018Z' => 'bra', 'BraA09t42129Z' => 'bra', 'BraA10t42536Z' => 'bra', 'BraA10t42537Z' => 'bra', 'C01p10690' => 'bna', 'C02p03890' => 'bna', 'C02p03900' => 'bna', 'C03p04620' => 'bna', 'C04p19870' => 'bna', 'C04p59670' => 'bna', 'C05p02460' => 'bna', 'C05p02470' => 'bna', 'C08p00980' => 'bna', 'C08p00990' => 'bna', 'C08p51030' => 'bna', 'C08p52360' => 'bna', 'C09p09120' => 'bna', 'CAN.G19.15' => 'can', 'CAN.G251.10' => 'can', 'CAN.G251.9' => 'can', 'CAN.G398.24' => 'can', 'CAN.G410.32' => 'can', 'CAN.G881.2' => 'can', 'CANSAT01G3025' => 'cansat', 'CANSAT78G1211' => 'cansat', 'CANSAT78G1218' => 'cansat', 'CANSAT78G1521' => 'cansat', 'CANSAT78G1670' => 'cansat', 'CARHR003600' => 'chi', 'CARHR003610' => 'chi', 'CARHR006290' => 'chi', 'CARHR006430' => 'chi', 'CARHR124110' => 'chi', 'CARHR203870' => 'chi', 'CARHR203880' => 'chi', 'CARHR203890' => 'chi', 'CARHR276880' => 'chi', 'Carub.0001s0346' => 'cru', 'Carub.0001s0347' => 'cru', 'Carub.0001s0607' => 'cru', 'Carub.0003s2768' => 'cru', 'Carub.0003s2769' => 'cru', 'Carub.0004s1178' => 'cru', 'Carub.0006s0806' => 'cru', 'Carub.0006s0807' => 'cru', 'Carub.0006s0808' => 'cru', 'Carub.0008s0501' => 'cru', 'Carub.0008s2379' => 'cru', 'Ca_08655_v3' => 'car', 'Ca_08922_v3' => 'car', 'Ca_08923_v3' => 'car', 'Ca_09119_v3' => 'car', 'Ca_09703_v3' => 'car', 'Ca_09705_v3' => 'car', 'Ca_09835_v3' => 'car', 'Ca_26403_v3' => 'car', 'Ca_30719_v3' => 'car', 'CBR_g17958' => 'cbr', 'CBR_g40516' => 'cbr', 'Cc00_g05350' => 'ccan', 'Cc01_g18690' => 'ccan', 'Cc03_g04830' => 'ccan', 'Cc03_g04850' => 'ccan', 'CDE02G4469' => 'cde', 'CDE06G0883' => 'cde', 'CDE06G1295' => 'cde', 'CDE06G1390' => 'cde', 'CDE07G0584' => 'cde', 'CDE07G1084' => 'cde', 'CDE08G1259' => 'cde', 'Cfa002341' => 'cfa', 'Cfa024337' => 'cfa', 'Ciclev10004749m.g' => 'ccl', 'Ciclev10006127m.g' => 'ccl', 'Ciclev10019720m.g' => 'ccl', 'Ciclev10022652m.g' => 'ccl', 'CiPaw.01G190400' => 'cil', 'CiPaw.01G190500' => 'cil', 'CiPaw.02G116400' => 'cil', 'CiPaw.02G116500' => 'cil', 'CiPaw.04G183000' => 'cil', 'CiPaw.04G183300' => 'cil', 'ClCG05G004610' => 'cla', 'ClCG05G004620' => 'cla', 'ClCG06G006730' => 'cla', 'ClCG06G006740' => 'cla', 'ClCG11G003690' => 'cla', 'COL.COLO4_08276' => 'col', 'COL.COLO4_08277' => 'col', 'COL.COLO4_15787' => 'col', 'COL.COLO4_15789' => 'col', 'Cpa.g.c44815' => 'cpa', 'Cpa.g.sc52.144' => 'cpa', 'Cpa.g.sc58.46' => 'cpa', 'Cpa.g.sc58.47' => 'cpa', 'Cre08.g360900' => 'cre', 'CsaV3_2G013030' => 'csa', 'CsaV3_2G013050' => 'csa', 'CsaV3_2G015620' => 'csa', 'CsaV3_3G012590' => 'csa', 'CsaV3_3G012600' => 'csa', 'CSS0001641' => 'camsi', 'CSS0008310' => 'camsi', 'CSS0013011' => 'camsi', 'CSS0017147' => 'camsi', 'CSS0022970' => 'camsi', 'CSS0025655' => 'camsi', 'CSS0028665' => 'camsi', 'CSS0029117' => 'camsi', 'CSS0032024' => 'camsi', 'CSS0039681' => 'camsi', 'CSS0046516' => 'camsi', 'CSS0050307' => 'camsi', 'DCAR_005871' => 'dca', 'DCAR_007342' => 'dca', 'DCAR_024228' => 'dca', 'DCAR_027277' => 'dca', 'DCAR_030718' => 'dca', 'Dinv20287' => 'din', 'Dinv22461' => 'din', 'Dinv22464' => 'din', 'Dinv29912' => 'din', 'Dinv29913' => 'din', 'Dinv34580' => 'din', 'Dinv34582' => 'din', 'Dinv44632' => 'din', 'Duzib052G0266' => 'dzi', 'Duzib133G0907' => 'dzi', 'Duzib133G1034' => 'dzi', 'Duzib138G0207' => 'dzi', 'Duzib138G0491' => 'dzi', 'Duzib151G0812' => 'dzi', 'Duzib151G1166' => 'dzi', 'Duzib168G0192' => 'dzi', 'Duzib211G0077' => 'dzi', 'Duzib212G0429' => 'dzi', 'Duzib212G0472' => 'dzi', 'ECA233G2617' => 'eca', 'ECA236G4188' => 'eca', 'ECA240G0936' => 'eca', 'ECA240G1129' => 'eca', 'ECA247G0623' => 'eca', 'EL10Ac5g10451' => 'bvu', 'EL10Ac5g10453' => 'bvu', 'EL10Ac5g10894' => 'bvu', 'Eucgr.H00192' => 'egr', 'Eucgr.H00193' => 'egr', 'Eucgr.H00194' => 'egr', 'Eucgr.J01562' => 'egr', 'Eucgr.K03301' => 'egr', 'FAN02G0632' => 'fan', 'FAN05G5378' => 'fan', 'FAN09G3247' => 'fan', 'FAN12G0435' => 'fan', 'FAN12G2426' => 'fan', 'FAN14G1707' => 'fan', 'FAN14G4725' => 'fan', 'FAN15G2071' => 'fan', 'FAN17G3065' => 'fan', 'FAN19G1376' => 'fan', 'FAN20G0354' => 'fan', 'FAN20G2429' => 'fan', 'FAN20G2658' => 'fan', 'FAN24G2343' => 'fan', 'FAN27G2362' => 'fan', 'FAN28G1765' => 'fan', 'FvH4_1g16020' => 'fve', 'FvH4_2g04890' => 'fve', 'FvH4_2g22270' => 'fve', 'FvH4_4g02630' => 'fve', 'FvH4_4g02640' => 'fve', 'FvH4_6g02650' => 'fve', 'Glyma.02G140600' => 'gma', 'Glyma.03G159900' => 'gma', 'Glyma.05G234800' => 'gma', 'Glyma.07G269600' => 'gma', 'Glyma.08G042300' => 'gma', 'Glyma.10G033500' => 'gma', 'Glyma.10G185200' => 'gma', 'Glyma.17G004300' => 'gma', 'Glyma.19G161900' => 'gma', 'Glyma.20G205100' => 'gma', 'Glyma.20G205200' => 'gma', 'Gohir.A01G139101' => 'ghi', 'Gohir.A02G035600' => 'ghi', 'Gohir.A02G117901' => 'ghi', 'Gohir.A07G210100' => 'ghi', 'Gohir.A07G210200' => 'ghi', 'Gohir.A08G061100' => 'ghi', 'Gohir.A09G223000' => 'ghi', 'Gohir.A09G223100' => 'ghi', 'Gohir.A10G113900' => 'ghi', 'Gohir.A10G114000' => 'ghi', 'Gohir.D02G042300' => 'ghi', 'Gohir.D07G216100' => 'ghi', 'Gohir.D07G216200' => 'ghi', 'Gohir.D08G070400' => 'ghi', 'Gohir.D09G225000' => 'ghi', 'Gohir.D09G225100' => 'ghi', 'Gohir.D10G152300' => 'ghi', 'Gohir.D10G153200' => 'ghi', 'Gohir.D11G133701' => 'ghi', 'Gorai.004G074100' => 'gra', 'Gorai.005G046800' => 'gra', 'Gorai.006G246500' => 'gra', 'Gorai.006G246600' => 'gra', 'Gorai.007G142900' => 'gra', 'Gorai.011G171000' => 'gra', 'Gorai.011G171100' => 'gra', 'Gorai.013G104300' => 'gra', 'Gorai.013G104400' => 'gra', 'GSVIVG01000754001' => 'vvi', 'GSVIVG01000756001' => 'vvi', 'GSVIVG01010903001' => 'vvi', 'GSVIVG01017623001' => 'vvi', 'GSVIVG01018113001' => 'vvi', 'GSVIVG01018116001' => 'vvi', 'GSVIVG01018118001' => 'vvi', 'HanXRQChr03g0076211' => 'han', 'HanXRQChr03g0092431' => 'han', 'HanXRQChr03g0092441' => 'han', 'HanXRQChr03g0092591' => 'han', 'HanXRQChr03g0092671' => 'han', 'HanXRQChr03g0092681' => 'han', 'HanXRQChr03g0092691' => 'han', 'HanXRQChr03g0092701' => 'han', 'HanXRQChr03g0092721' => 'han', 'HanXRQChr03g0092731' => 'han', 'HanXRQChr04g0113681' => 'han', 'HanXRQChr10g0281371' => 'han', 'HanXRQChr11g0337141' => 'han', 'HanXRQChr13g0424521' => 'han', 'HanXRQChr13g0424531' => 'han', 'HanXRQChr13g0424541' => 'han', 'HanXRQChr16g0498221' => 'han', 'Haze_04377' => 'cav', 'Haze_11298' => 'cav', 'Haze_24547' => 'cav', 'Haze_24550' => 'cav', 'Haze_26587' => 'cav', 'Hma1.2p1_0650F.1_g195410' => 'hma', 'Hma1.2p1_0893F.1_g233470' => 'hma', 'HPP92_006508' => 'vpl', 'HPP92_024780' => 'vpl', 'Hund02688' => 'sun', 'Hund09380' => 'sun', 'Hund09381' => 'sun', 'Hund09832' => 'sun', 'Hund09833' => 'sun', 'Hund11351' => 'sun', 'Hund11513' => 'sun', 'Lalb_Chr06g0162591' => 'lal', 'Lalb_Chr06g0162601' => 'lal', 'Lalb_Chr06g0169321' => 'lal', 'Lalb_Chr09g0330951' => 'lal', 'Lalb_Chr16g0387631' => 'lal', 'Lalb_Chr21g0306241' => 'lal', 'Lalb_Chr25g0290051' => 'lal', 'Lalb_Chr25g0290061' => 'lal', 'Lalb_Chr25g0290071' => 'lal', 'Lj1g0003876' => 'lja', 'Lj1P1207T36' => 'lonja', 'Lj2C1156G12' => 'lonja', 'Lj3A793G39' => 'lonja', 'Lj3C580G2' => 'lonja', 'Lj3C780G2' => 'lonja', 'Lj3C780T4' => 'lonja', 'Lj3C793G9' => 'lonja', 'Lj4g0012960' => 'lja', 'Lj5g0021252' => 'lja', 'Lj5g0021484' => 'lja', 'Lj5g0024528' => 'lja', 'Lj6A399T12' => 'lonja', 'Lj6A656G65' => 'lonja', 'Lsat_1_v5_gn_3_125500' => 'lsa', 'Lsat_1_v5_gn_3_125540' => 'lsa', 'Lsat_1_v5_gn_5_72701' => 'lsa', 'Lsat_1_v5_gn_8_91560' => 'lsa', 'Lsat_1_v5_gn_9_9640' => 'lsa', 'Manes.01G200600' => 'mes', 'Manes.01G200700' => 'mes', 'Manes.03G168900' => 'mes', 'Manes.03G169000' => 'mes', 'Manes.05G085801' => 'mes', 'Manes.05G086200' => 'mes', 'Manes.15G036700' => 'mes', 'Manes.15G036900' => 'mes', 'Mapoly0004s0172' => 'mpo', 'Mapoly0023s0001' => 'mpo', 'Mapoly0142s0012' => 'mpo', 'MBI01_g32854_MAGBIO' => 'mbi', 'MBI11_g24427_MAGBIO' => 'mbi', 'MBI11_g47319_MAGBIO' => 'mbi', 'MCO01G433' => 'mco', 'MD00G1187800' => 'mdo', 'MD04G1226500' => 'mdo', 'MD05G1203900' => 'mdo', 'MD10G1191100' => 'mdo', 'MD12G1243500' => 'mdo', 'MD13G1207000' => 'mdo', 'MD13G1207100' => 'mdo', 'MD16G1208600' => 'mdo', 'Medtr1g050352' => 'mtr', 'Medtr1g070385' => 'mtr', 'Medtr1g070450' => 'mtr', 'Medtr1g075200' => 'mtr', 'Medtr1g075250' => 'mtr', 'Medtr1g075260' => 'mtr', 'Medtr1g475250' => 'mtr', 'Medtr4g075450' => 'mtr', 'Medtr7g096300' => 'mtr', 'Medtr8g105110' => 'mtr', 'MELO3C006470.2' => 'cme', 'MELO3C006471.2' => 'cme', 'MELO3C020772.2' => 'cme', 'MELO3C026780.2' => 'cme', 'MELO3C026781.2' => 'cme', 'Migut.D00390' => 'egut', 'Migut.G00435' => 'egut', 'Migut.G00436' => 'egut', 'Migut.G00718' => 'egut', 'MSTRG.21891' => 'ama', 'MSTRG.26910' => 'ama', 'MSTRG.4099' => 'ama', 'MSTRG.9925' => 'ama', 'Nitab4.5_0000165g0010' => 'nta', 'Nitab4.5_0000209g0180' => 'nta', 'Nitab4.5_0000244g0440' => 'nta', 'Nitab4.5_0000525g0220' => 'nta', 'Nitab4.5_0001597g0020' => 'nta', 'Nitab4.5_0001878g0040' => 'nta', 'Nitab4.5_0001878g0060' => 'nta', 'Nitab4.5_0002838g0100' => 'nta', 'Nitab4.5_0002838g0120' => 'nta', 'Nitab4.5_0004798g0030' => 'nta', 'Nitab4.5_0005420g0010' => 'nta', 'Nitab4.5_0005507g0010' => 'nta', 'Nitab4.5_0005574g0020' => 'nta', 'Nitab4.5_0005838g0010' => 'nta', 'Nitab4.5_0010580g0020' => 'nta', 'Nn1g02599' => 'nnu', 'Nn1g02608' => 'nnu', 'Nn3g17742' => 'nnu', 'Nn3g19534' => 'nnu', 'Nn3g19535' => 'nnu', 'Oeu008790.1' => 'oeu', 'Oeu008792.1' => 'oeu', 'Oeu032590.1' => 'oeu', 'Oeu035349.1' => 'oeu', 'Oeu049791.1' => 'oeu', 'Os01g0774500' => 'osa', 'Os03g0628800' => 'osa', 'Os03g0798600' => 'osa', 'Os05g0508800' => 'osa', 'Peaxi162Scf00036g02018' => 'pax', 'Peaxi162Scf00578g00032' => 'pax', 'Peaxi162Scf00578g00317' => 'pax', 'Peaxi162Scf00785g00114' => 'pax', 'Peaxi162Scf00813g00119' => 'pax', 'Peaxi162Scf00906g00227' => 'pax', 'PGR004G0875' => 'pgr', 'PGR004G2424' => 'pgr', 'PGR031G1239' => 'pgr', 'PGR031G2474' => 'pgr', 'PGR044G0423' => 'pgr', 'PGSC0003DMG400001128' => 'stu', 'PGSC0003DMG400007336' => 'stu', 'PGSC0003DMG400016318' => 'stu', 'PGSC0003DMG400016319' => 'stu', 'PGSC0003DMG400018074' => 'stu', 'Phvul.001G157700' => 'pvu', 'Phvul.002G148550' => 'pvu', 'Phvul.002G320200' => 'pvu', 'Phvul.003G089200' => 'pvu', 'Phvul.007G126000' => 'pvu', 'Phvul.007G126100' => 'pvu', 'Phvul.007G178000' => 'pvu', 'Phvul.007G178200' => 'pvu', 'Potri.002G043000' => 'ptr', 'Potri.002G043200' => 'ptr', 'Potri.003G123750' => 'ptr', 'Potri.005G055401' => 'ptr', 'Potri.005G219700' => 'ptr', 'Potri.005G220000' => 'ptr', 'Potri.008G161901' => 'ptr', 'Potri.008G162000' => 'ptr', 'Potri.008G162400' => 'ptr', 'Potri.010G076900' => 'ptr', 'Pp3c12_9180' => 'ppa', 'Pp3c13_19770' => 'ppa', 'Pp3c14_22950' => 'ppa', 'Pp3c16_12160' => 'ppa', 'Pp3c27_7820' => 'ppa', 'Pp3c2_3490' => 'ppa', 'Pp3c3_23700' => 'ppa', 'Pp3c3_36520' => 'ppa', 'Pp3c4_15250' => 'ppa', 'PRCOL_00007002' => 'pco', 'Prupe.1G030600' => 'ppe', 'Prupe.1G030700' => 'ppe', 'Prupe.6G345200' => 'ppe', 'Prupe.8G230300' => 'ppe', 'Prupe.8G230500' => 'ppe', 'Psat3g059600' => 'psa', 'Psat5g200920' => 'psa', 'Psat6g056440' => 'psa', 'Psat6g057360' => 'psa', 'Psat6g134120' => 'psa', 'Psat6g134160' => 'psa', 'Psat7g008640' => 'psa', 'Psat7g185240' => 'psa', 'PSO017G1330' => 'pso', 'PSO063G6097' => 'pso', 'PSO170G0835' => 'pso', 'PSO170G2499' => 'pso', 'PSO210G5058' => 'pso', 'PSO210G6154' => 'pso', 'PSO585G0031' => 'pso', 'PSO832G0264' => 'pso', 'PSO832G4288' => 'pso', 'QL03p027355' => 'qlo', 'QL03p027430' => 'qlo', 'QL04p081380' => 'qlo', 'QL06p015642' => 'qlo', 'QL06p015650' => 'qlo', 'QL06p015686' => 'qlo', 'QL12p042927' => 'qlo', 'QL93p1863_0035' => 'qlo', 'RcHm_v2.0_Chr3g0450581' => 'rch', 'RcHm_v2.0_Chr4g0390371' => 'rch', 'RcHm_v2.0_Chr4g0390381' => 'rch', 'RcHm_v2.0_Chr4g0390491' => 'rch', 'RcHm_v2.0_Chr4g0390501' => 'rch', 'RcHm_v2.0_Chr6g0289231' => 'rch', 'Rhsim04G0190400' => 'rsi', 'Rhsim04G0190500' => 'rsi', 'Rhsim04G0190600' => 'rsi', 'Rhsim13G0031400' => 'rsi', 'Rhsim13G0165600' => 'rsi', 'RhsimUnG0114600' => 'rsi', 'RhsimUnG0114700' => 'rsi', 'Sabra02G0034800' => 'sbr', 'Sabra02G0035100' => 'sbr', 'Sabra05G0168600' => 'sbr', 'Sabra05G0168800' => 'sbr', 'Sabra08G0123700' => 'sbr', 'Sabra10G0031900' => 'sbr', 'Sabra13G0039000' => 'sbr', 'SalBow2G0782' => 'sbo', 'SalBow2G1403' => 'sbo', 'SalBow4G0074' => 'sbo', 'SalBow4G2635' => 'sbo', 'SalBow5G3010' => 'sbo', 'Sc05g0000870' => 'sci', 'Sc05g0000890' => 'sci', 'Sc13g0005000' => 'sci', 'Sc13g0005030' => 'sci', 'Sc19g0003790' => 'sci', 'Sc19g0003800' => 'sci', 'Sed0003467' => 'sed', 'Sed0009355' => 'sed', 'Sed0009894' => 'sed', 'Sed0011972' => 'sed', 'Sed0021483' => 'sed', 'Sed0021750' => 'sed', 'Sed0026279' => 'sed', 'SEGI_05312' => 'sgi', 'SEGI_10112' => 'sgi', 'SEGI_15835' => 'sgi', 'SEGI_30386' => 'sgi', 'SEGI_34122' => 'sgi', 'SEGI_35063' => 'sgi', 'SGA_v2.0_scaffold101G29794' => 'sas', 'SGA_v2.0_scaffold1G00573' => 'sas', 'SGA_v2.0_scaffold79G25637' => 'sas', 'SGA_v2.0_scaffold88G27283' => 'sas', 'SGA_v2.0_scaffold88G27285' => 'sas', 'SGA_v2.0_scaffold88G27331' => 'sas', 'SHI09937' => 'shi', 'SMO119G0302' => 'smo', 'SMO137G0231' => 'smo', 'SMO367G1151' => 'smo', 'Solyc02g082000.3' => 'sly', 'Solyc06g031670.3' => 'sly', 'Solyc06g053810.3' => 'sly', 'Solyc07g025457.1' => 'sly', 'Solyc08g059740.1' => 'sly', 'Solyc08g059750.3' => 'sly', 'Solyc09g083370.3' => 'sly', 'Solyc12g038950.3' => 'sly', 'Sopen02g026630' => 'spe', 'Sopen06g018930' => 'spe', 'Sopen06g018940' => 'spe', 'Sopen08g009460' => 'spe', 'Sopen09g032290' => 'spe', 'Sp1g03080' => 'spa', 'Sp1g03090' => 'spa', 'Sp1g05480' => 'spa', 'Sp2g07860' => 'spa', 'Sp2g08430' => 'spa', 'Sp2g08440' => 'spa', 'Sp2g26200' => 'spa', 'Sp4g13170' => 'spa', 'Sp6g33840' => 'spa', 'SpUn1204_0010' => 'spa', 'TAR365G0908' => 'tar', 'TAR381G1270' => 'tar', 'TAR381G1651' => 'tar', 'TAR625G1131' => 'tar', 'TAR633G0962' => 'tar', 'TAR633G1729' => 'tar', 'TAR633G1864' => 'tar', 'TAR636G0221' => 'tar', 'TAR636G0314' => 'tar', 'TAR636G3202' => 'tar', 'THA.LOC104800805' => 'tha', 'THA.LOC104801096' => 'tha', 'THA.LOC104801555' => 'tha', 'THA.LOC104808491' => 'tha', 'THA.LOC104808595' => 'tha', 'THA.LOC104815985' => 'tha', 'THA.LOC104822250' => 'tha', 'THA.LOC104826071' => 'tha', 'Thecc.01G265200' => 'tca', 'Thecc.01G265300' => 'tca', 'Thecc.01G265700' => 'tca', 'Thecc.03G109100' => 'tca', 'Thecc.04G245900' => 'tca', 'Thecc.04G246000' => 'tca', 'Thhalv10003334m.g' => 'esa', 'Thhalv10005508m.g' => 'esa', 'Thhalv10005643m.g' => 'esa', 'Thhalv10007316m.g' => 'esa', 'Thhalv10009006m.g' => 'esa', 'Thhalv10009309m.g' => 'esa', 'Thhalv10014917m.g' => 'esa', 'Thhalv10014919m.g' => 'esa', 'Thhalv10015393m.g' => 'esa', 'Thhalv10016515m.g' => 'esa', 'Thhalv10029242m.g' => 'esa', 'TPR.G16654' => 'tpr', 'TPR.G20589' => 'tpr', 'TPR.G23029' => 'tpr', 'TPR.G27731' => 'tpr', 'TPR.G28889' => 'tpr', 'TPR.G28899' => 'tpr', 'TPR.G30846' => 'tpr', 'TPR.G5452' => 'tpr', 'TPR.G5713' => 'tpr', 'TPR.G9046' => 'tpr', 'TPR.G9061' => 'tpr', 'TWI09G1075' => 'twi', 'TWI12G0806' => 'twi', 'TWI18G0108' => 'twi', 'TWI53G1361' => 'twi', 'TWI73G0185' => 'twi', 'TWI73G0427' => 'twi', 'unitig_37.g12001' => 'ugi', 'unitig_747.g21660' => 'ugi', 'unitig_748.g7232' => 'ugi', 'unitig_748.g7315' => 'ugi', 'unitig_85.g27262' => 'ugi', 'unitig_92.g28220' => 'ugi', 'vmacro02632' => 'vma', 'vmacro08410' => 'vma', 'vmacro08411' => 'vma', 'vmacro15407' => 'vma', 'VMungo0251G3619' => 'vmu', 'VMungo0720G1204' => 'vmu', 'VMungo0720G1918' => 'vmu', 'VMungo0720G2387' => 'vmu', 'VMungo0720G2961' => 'vmu', 'VMungo1215G2154' => 'vmu', 'VMungo1383G2411' => 'vmu', 'Zm00001eb051130' => 'zma', 'Zm00001eb116830' => 'zma', 'Zm00001eb116850' => 'zma', 'Zm00001eb151740' => 'zma', 'Zm00001eb292360' => 'zma', 'Zm00001eb301640' => 'zma' ) $gf_id = 'HOM05D000856' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000856' ) $data_identifier = 'HOM05D000856' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 13, 'ath' => (int) 10, 'atr' => (int) 1, 'acertr' => (int) 8, 'cqu' => (int) 6, 'bca' => (int) 21, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 11, 'car' => (int) 9, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 8, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 5, 'fan' => (int) 16, 'fve' => (int) 6, 'gma' => (int) 11, 'ghi' => (int) 19, 'gra' => (int) 9, 'vvi' => (int) 7, 'han' => (int) 17, 'cav' => (int) 5, 'hma' => (int) 2, 'vpl' => (int) 2, 'sun' => (int) 7, 'lal' => (int) 9, 'lja' => (int) 5, 'lonja' => (int) 9, 'lsa' => (int) 5, 'mes' => (int) 8, 'mpo' => (int) 3, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 10, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 15, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 9, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 9, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 6, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 5, 'spa' => (int) 10, 'tar' => (int) 10, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 11, 'tpr' => (int) 11, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 4, 'vmu' => (int) 7, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb301640' $species_info = array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ) $local_species = 'mes' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000856', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p00010' => 'bna', 'A03p04160' => 'bna', 'A03p17160' => 'bna', 'A04p23370' => 'bna', 'A05p14860' => 'bna', 'A08p37020' => 'bna', 'A09p08050' => 'bna', 'A09p66800' => 'bna', 'A09p67940' => 'bna', 'A10p02680' => 'bna', 'A10p05320' => 'bna', 'Aa31LG1G20560' => 'aar', 'Aa31LG1G20610' => 'aar', 'Aa31LG1G7810' => 'aar', 'Aa31LG5G3590' => 'aar', 'Aa31LG5G6140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3819' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4683' => 'aag', 'Actinidia04480' => 'ach', 'Actinidia05466' => 'ach', 'Actinidia08445' => 'ach', 'Actinidia21170' => 'ach', 'Actinidia24812' => 'ach', 'Actinidia24951' => 'ach', 'Actinidia40088' => 'ach', 'Ah.02g111660' => 'amhyb', 'Ah.11g048900' => 'amhyb', 'Ah.11g049910' => 'amhyb', 'AL1G13870' => 'aly', 'AL1G13880' => 'aly', 'AL1G16760' => 'aly', 'AL390U10020' => 'aly', 'AL4G25520' => 'aly', 'AL6G19890' => 'aly', 'AL6G19900' => 'aly', 'AL6G19910' => 'aly', 'AL8G40100' => 'aly', 'Aqoxy2G03562' => 'aox', 'Aqoxy5G00316' => 'aox', 'Aqoxy5G00926' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1628KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1H403S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2FU6SJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.882I6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8YRY2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YN1SN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AF70II' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZA8L1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F916KL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHRD8H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KTZ8QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S22EMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8M29T' => 'arhy', 'AT1G04270' => 'ath', 'AT1G04280' => 'ath', 'AT1G06750' => 'ath', 'AT1G33850' => 'ath', 'AT2G30630' => 'ath', 'AT5G09490' => 'ath', 'AT5G09500' => 'ath', 'AT5G09510' => 'ath', 'AT5G43640' => 'ath', 'AT5G63070' => 'ath', 'ATR0605G315' => 'atr', 'Atru.chr11.175' => 'acertr', 'Atru.chr11.653' => 'acertr', 'Atru.chr3.1616' => 'acertr', 'Atru.chr4.2230' => 'acertr', 'Atru.chr4.2232' => 'acertr', 'Atru.chr5.1598' => 'acertr', 'Atru.chr5.1600' => 'acertr', 'Atru.chr5.2188' => 'acertr', 'AUR62008326' => 'cqu', 'AUR62011922' => 'cqu', 'AUR62011924' => 'cqu', 'AUR62021771' => 'cqu', 'AUR62032237' => 'cqu', 'AUR62032240' => 'cqu', 'BcaB01g05572' => 'bca', 'BcaB02g10337' => 'bca', 'BcaB04g19944' => 'bca', 'BcaB05g21548' => 'bca', 'BcaB05g21549' => 'bca', 'BcaB05g23227' => 'bca', 'BcaB06g26256' => 'bca', 'BcaB06g26257' => 'bca', 'BcaB06g28379' => 'bca', 'BcaC02g11159' => 'bca', 'BcaC03g13258' => 'bca', 'BcaC03g13259' => 'bca', 'BcaC05g24456' => 'bca', 'BcaC05g24457' => 'bca', 'BcaC07g36922' => 'bca', 'BcaC07g36923' => 'bca', 'BcaC07g42050' => 'bca', 'BcaC07g42176' => 'bca', 'BcaC07g42195' => 'bca', 'BcaC07g42196' => 'bca', 'BcaNung06674' => 'bca', 'BolC2t06351H' => 'bol', 'BolC2t06352H' => 'bol', 'BolC3t12993H' => 'bol', 'BolC4t23525H' => 'bol', 'BolC4t27475H' => 'bol', 'BolC5t29025H' => 'bol', 'BolC5t29026H' => 'bol', 'BolC8t46898H' => 'bol', 'BolC8t46899H' => 'bol', 'BolC8t52630H' => 'bol', 'BolC8t52765H' => 'bol', 'BolC9t53824H' => 'bol', 'BraA03t09760Z' => 'bra', 'BraA03t10990Z' => 'bra', 'BraA05t20413Z' => 'bra', 'BraA08t35602Z' => 'bra', 'BraA09t36458Z' => 'bra', 'BraA09t42018Z' => 'bra', 'BraA09t42129Z' => 'bra', 'BraA10t42536Z' => 'bra', 'BraA10t42537Z' => 'bra', 'C01p10690' => 'bna', 'C02p03890' => 'bna', 'C02p03900' => 'bna', 'C03p04620' => 'bna', 'C04p19870' => 'bna', 'C04p59670' => 'bna', 'C05p02460' => 'bna', 'C05p02470' => 'bna', 'C08p00980' => 'bna', 'C08p00990' => 'bna', 'C08p51030' => 'bna', 'C08p52360' => 'bna', 'C09p09120' => 'bna', 'CAN.G19.15' => 'can', 'CAN.G251.10' => 'can', 'CAN.G251.9' => 'can', 'CAN.G398.24' => 'can', 'CAN.G410.32' => 'can', 'CAN.G881.2' => 'can', 'CANSAT01G3025' => 'cansat', 'CANSAT78G1211' => 'cansat', 'CANSAT78G1218' => 'cansat', 'CANSAT78G1521' => 'cansat', 'CANSAT78G1670' => 'cansat', 'CARHR003600' => 'chi', 'CARHR003610' => 'chi', 'CARHR006290' => 'chi', 'CARHR006430' => 'chi', 'CARHR124110' => 'chi', 'CARHR203870' => 'chi', 'CARHR203880' => 'chi', 'CARHR203890' => 'chi', 'CARHR276880' => 'chi', 'Carub.0001s0346' => 'cru', 'Carub.0001s0347' => 'cru', 'Carub.0001s0607' => 'cru', 'Carub.0003s2768' => 'cru', 'Carub.0003s2769' => 'cru', 'Carub.0004s1178' => 'cru', 'Carub.0006s0806' => 'cru', 'Carub.0006s0807' => 'cru', 'Carub.0006s0808' => 'cru', 'Carub.0008s0501' => 'cru', 'Carub.0008s2379' => 'cru', 'Ca_08655_v3' => 'car', 'Ca_08922_v3' => 'car', 'Ca_08923_v3' => 'car', 'Ca_09119_v3' => 'car', 'Ca_09703_v3' => 'car', 'Ca_09705_v3' => 'car', 'Ca_09835_v3' => 'car', 'Ca_26403_v3' => 'car', 'Ca_30719_v3' => 'car', 'CBR_g17958' => 'cbr', 'CBR_g40516' => 'cbr', 'Cc00_g05350' => 'ccan', 'Cc01_g18690' => 'ccan', 'Cc03_g04830' => 'ccan', 'Cc03_g04850' => 'ccan', 'CDE02G4469' => 'cde', 'CDE06G0883' => 'cde', 'CDE06G1295' => 'cde', 'CDE06G1390' => 'cde', 'CDE07G0584' => 'cde', 'CDE07G1084' => 'cde', 'CDE08G1259' => 'cde', 'Cfa002341' => 'cfa', 'Cfa024337' => 'cfa', 'Ciclev10004749m.g' => 'ccl', 'Ciclev10006127m.g' => 'ccl', 'Ciclev10019720m.g' => 'ccl', 'Ciclev10022652m.g' => 'ccl', 'CiPaw.01G190400' => 'cil', 'CiPaw.01G190500' => 'cil', 'CiPaw.02G116400' => 'cil', 'CiPaw.02G116500' => 'cil', 'CiPaw.04G183000' => 'cil', 'CiPaw.04G183300' => 'cil', 'ClCG05G004610' => 'cla', 'ClCG05G004620' => 'cla', 'ClCG06G006730' => 'cla', 'ClCG06G006740' => 'cla', 'ClCG11G003690' => 'cla', 'COL.COLO4_08276' => 'col', 'COL.COLO4_08277' => 'col', 'COL.COLO4_15787' => 'col', 'COL.COLO4_15789' => 'col', 'Cpa.g.c44815' => 'cpa', 'Cpa.g.sc52.144' => 'cpa', 'Cpa.g.sc58.46' => 'cpa', 'Cpa.g.sc58.47' => 'cpa', 'Cre08.g360900' => 'cre', 'CsaV3_2G013030' => 'csa', 'CsaV3_2G013050' => 'csa', 'CsaV3_2G015620' => 'csa', 'CsaV3_3G012590' => 'csa', 'CsaV3_3G012600' => 'csa', 'CSS0001641' => 'camsi', 'CSS0008310' => 'camsi', 'CSS0013011' => 'camsi', 'CSS0017147' => 'camsi', 'CSS0022970' => 'camsi', 'CSS0025655' => 'camsi', 'CSS0028665' => 'camsi', 'CSS0029117' => 'camsi', 'CSS0032024' => 'camsi', 'CSS0039681' => 'camsi', 'CSS0046516' => 'camsi', 'CSS0050307' => 'camsi', 'DCAR_005871' => 'dca', 'DCAR_007342' => 'dca', 'DCAR_024228' => 'dca', 'DCAR_027277' => 'dca', 'DCAR_030718' => 'dca', 'Dinv20287' => 'din', 'Dinv22461' => 'din', 'Dinv22464' => 'din', 'Dinv29912' => 'din', 'Dinv29913' => 'din', 'Dinv34580' => 'din', 'Dinv34582' => 'din', 'Dinv44632' => 'din', 'Duzib052G0266' => 'dzi', 'Duzib133G0907' => 'dzi', 'Duzib133G1034' => 'dzi', 'Duzib138G0207' => 'dzi', 'Duzib138G0491' => 'dzi', 'Duzib151G0812' => 'dzi', 'Duzib151G1166' => 'dzi', 'Duzib168G0192' => 'dzi', 'Duzib211G0077' => 'dzi', 'Duzib212G0429' => 'dzi', 'Duzib212G0472' => 'dzi', 'ECA233G2617' => 'eca', 'ECA236G4188' => 'eca', 'ECA240G0936' => 'eca', 'ECA240G1129' => 'eca', 'ECA247G0623' => 'eca', 'EL10Ac5g10451' => 'bvu', 'EL10Ac5g10453' => 'bvu', 'EL10Ac5g10894' => 'bvu', 'Eucgr.H00192' => 'egr', 'Eucgr.H00193' => 'egr', 'Eucgr.H00194' => 'egr', 'Eucgr.J01562' => 'egr', 'Eucgr.K03301' => 'egr', 'FAN02G0632' => 'fan', 'FAN05G5378' => 'fan', 'FAN09G3247' => 'fan', 'FAN12G0435' => 'fan', 'FAN12G2426' => 'fan', 'FAN14G1707' => 'fan', 'FAN14G4725' => 'fan', 'FAN15G2071' => 'fan', 'FAN17G3065' => 'fan', 'FAN19G1376' => 'fan', 'FAN20G0354' => 'fan', 'FAN20G2429' => 'fan', 'FAN20G2658' => 'fan', 'FAN24G2343' => 'fan', 'FAN27G2362' => 'fan', 'FAN28G1765' => 'fan', 'FvH4_1g16020' => 'fve', 'FvH4_2g04890' => 'fve', 'FvH4_2g22270' => 'fve', 'FvH4_4g02630' => 'fve', 'FvH4_4g02640' => 'fve', 'FvH4_6g02650' => 'fve', 'Glyma.02G140600' => 'gma', 'Glyma.03G159900' => 'gma', 'Glyma.05G234800' => 'gma', 'Glyma.07G269600' => 'gma', 'Glyma.08G042300' => 'gma', 'Glyma.10G033500' => 'gma', 'Glyma.10G185200' => 'gma', 'Glyma.17G004300' => 'gma', 'Glyma.19G161900' => 'gma', 'Glyma.20G205100' => 'gma', 'Glyma.20G205200' => 'gma', 'Gohir.A01G139101' => 'ghi', 'Gohir.A02G035600' => 'ghi', 'Gohir.A02G117901' => 'ghi', 'Gohir.A07G210100' => 'ghi', 'Gohir.A07G210200' => 'ghi', 'Gohir.A08G061100' => 'ghi', 'Gohir.A09G223000' => 'ghi', 'Gohir.A09G223100' => 'ghi', 'Gohir.A10G113900' => 'ghi', 'Gohir.A10G114000' => 'ghi', 'Gohir.D02G042300' => 'ghi', 'Gohir.D07G216100' => 'ghi', 'Gohir.D07G216200' => 'ghi', 'Gohir.D08G070400' => 'ghi', 'Gohir.D09G225000' => 'ghi', 'Gohir.D09G225100' => 'ghi', 'Gohir.D10G152300' => 'ghi', 'Gohir.D10G153200' => 'ghi', 'Gohir.D11G133701' => 'ghi', 'Gorai.004G074100' => 'gra', 'Gorai.005G046800' => 'gra', 'Gorai.006G246500' => 'gra', 'Gorai.006G246600' => 'gra', 'Gorai.007G142900' => 'gra', 'Gorai.011G171000' => 'gra', 'Gorai.011G171100' => 'gra', 'Gorai.013G104300' => 'gra', 'Gorai.013G104400' => 'gra', 'GSVIVG01000754001' => 'vvi', 'GSVIVG01000756001' => 'vvi', 'GSVIVG01010903001' => 'vvi', 'GSVIVG01017623001' => 'vvi', 'GSVIVG01018113001' => 'vvi', 'GSVIVG01018116001' => 'vvi', 'GSVIVG01018118001' => 'vvi', 'HanXRQChr03g0076211' => 'han', 'HanXRQChr03g0092431' => 'han', 'HanXRQChr03g0092441' => 'han', 'HanXRQChr03g0092591' => 'han', 'HanXRQChr03g0092671' => 'han', 'HanXRQChr03g0092681' => 'han', 'HanXRQChr03g0092691' => 'han', 'HanXRQChr03g0092701' => 'han', 'HanXRQChr03g0092721' => 'han', 'HanXRQChr03g0092731' => 'han', 'HanXRQChr04g0113681' => 'han', 'HanXRQChr10g0281371' => 'han', 'HanXRQChr11g0337141' => 'han', 'HanXRQChr13g0424521' => 'han', 'HanXRQChr13g0424531' => 'han', 'HanXRQChr13g0424541' => 'han', 'HanXRQChr16g0498221' => 'han', 'Haze_04377' => 'cav', 'Haze_11298' => 'cav', 'Haze_24547' => 'cav', 'Haze_24550' => 'cav', 'Haze_26587' => 'cav', 'Hma1.2p1_0650F.1_g195410' => 'hma', 'Hma1.2p1_0893F.1_g233470' => 'hma', 'HPP92_006508' => 'vpl', 'HPP92_024780' => 'vpl', 'Hund02688' => 'sun', 'Hund09380' => 'sun', 'Hund09381' => 'sun', 'Hund09832' => 'sun', 'Hund09833' => 'sun', 'Hund11351' => 'sun', 'Hund11513' => 'sun', 'Lalb_Chr06g0162591' => 'lal', 'Lalb_Chr06g0162601' => 'lal', 'Lalb_Chr06g0169321' => 'lal', 'Lalb_Chr09g0330951' => 'lal', 'Lalb_Chr16g0387631' => 'lal', 'Lalb_Chr21g0306241' => 'lal', 'Lalb_Chr25g0290051' => 'lal', 'Lalb_Chr25g0290061' => 'lal', 'Lalb_Chr25g0290071' => 'lal', 'Lj1g0003876' => 'lja', 'Lj1P1207T36' => 'lonja', 'Lj2C1156G12' => 'lonja', 'Lj3A793G39' => 'lonja', 'Lj3C580G2' => 'lonja', 'Lj3C780G2' => 'lonja', 'Lj3C780T4' => 'lonja', 'Lj3C793G9' => 'lonja', 'Lj4g0012960' => 'lja', 'Lj5g0021252' => 'lja', 'Lj5g0021484' => 'lja', 'Lj5g0024528' => 'lja', 'Lj6A399T12' => 'lonja', 'Lj6A656G65' => 'lonja', 'Lsat_1_v5_gn_3_125500' => 'lsa', 'Lsat_1_v5_gn_3_125540' => 'lsa', 'Lsat_1_v5_gn_5_72701' => 'lsa', 'Lsat_1_v5_gn_8_91560' => 'lsa', 'Lsat_1_v5_gn_9_9640' => 'lsa', 'Manes.01G200600' => 'mes', 'Manes.01G200700' => 'mes', 'Manes.03G168900' => 'mes', 'Manes.03G169000' => 'mes', 'Manes.05G085801' => 'mes', 'Manes.05G086200' => 'mes', 'Manes.15G036700' => 'mes', 'Manes.15G036900' => 'mes', 'Mapoly0004s0172' => 'mpo', 'Mapoly0023s0001' => 'mpo', 'Mapoly0142s0012' => 'mpo', 'MBI01_g32854_MAGBIO' => 'mbi', 'MBI11_g24427_MAGBIO' => 'mbi', 'MBI11_g47319_MAGBIO' => 'mbi', 'MCO01G433' => 'mco', 'MD00G1187800' => 'mdo', 'MD04G1226500' => 'mdo', 'MD05G1203900' => 'mdo', 'MD10G1191100' => 'mdo', 'MD12G1243500' => 'mdo', 'MD13G1207000' => 'mdo', 'MD13G1207100' => 'mdo', 'MD16G1208600' => 'mdo', 'Medtr1g050352' => 'mtr', 'Medtr1g070385' => 'mtr', 'Medtr1g070450' => 'mtr', 'Medtr1g075200' => 'mtr', 'Medtr1g075250' => 'mtr', 'Medtr1g075260' => 'mtr', 'Medtr1g475250' => 'mtr', 'Medtr4g075450' => 'mtr', 'Medtr7g096300' => 'mtr', 'Medtr8g105110' => 'mtr', 'MELO3C006470.2' => 'cme', 'MELO3C006471.2' => 'cme', 'MELO3C020772.2' => 'cme', 'MELO3C026780.2' => 'cme', 'MELO3C026781.2' => 'cme', 'Migut.D00390' => 'egut', 'Migut.G00435' => 'egut', 'Migut.G00436' => 'egut', 'Migut.G00718' => 'egut', 'MSTRG.21891' => 'ama', 'MSTRG.26910' => 'ama', 'MSTRG.4099' => 'ama', 'MSTRG.9925' => 'ama', 'Nitab4.5_0000165g0010' => 'nta', 'Nitab4.5_0000209g0180' => 'nta', 'Nitab4.5_0000244g0440' => 'nta', 'Nitab4.5_0000525g0220' => 'nta', 'Nitab4.5_0001597g0020' => 'nta', 'Nitab4.5_0001878g0040' => 'nta', 'Nitab4.5_0001878g0060' => 'nta', 'Nitab4.5_0002838g0100' => 'nta', 'Nitab4.5_0002838g0120' => 'nta', 'Nitab4.5_0004798g0030' => 'nta', 'Nitab4.5_0005420g0010' => 'nta', 'Nitab4.5_0005507g0010' => 'nta', 'Nitab4.5_0005574g0020' => 'nta', 'Nitab4.5_0005838g0010' => 'nta', 'Nitab4.5_0010580g0020' => 'nta', 'Nn1g02599' => 'nnu', 'Nn1g02608' => 'nnu', 'Nn3g17742' => 'nnu', 'Nn3g19534' => 'nnu', 'Nn3g19535' => 'nnu', 'Oeu008790.1' => 'oeu', 'Oeu008792.1' => 'oeu', 'Oeu032590.1' => 'oeu', 'Oeu035349.1' => 'oeu', 'Oeu049791.1' => 'oeu', 'Os01g0774500' => 'osa', 'Os03g0628800' => 'osa', 'Os03g0798600' => 'osa', 'Os05g0508800' => 'osa', 'Peaxi162Scf00036g02018' => 'pax', 'Peaxi162Scf00578g00032' => 'pax', 'Peaxi162Scf00578g00317' => 'pax', 'Peaxi162Scf00785g00114' => 'pax', 'Peaxi162Scf00813g00119' => 'pax', 'Peaxi162Scf00906g00227' => 'pax', 'PGR004G0875' => 'pgr', 'PGR004G2424' => 'pgr', 'PGR031G1239' => 'pgr', 'PGR031G2474' => 'pgr', 'PGR044G0423' => 'pgr', 'PGSC0003DMG400001128' => 'stu', 'PGSC0003DMG400007336' => 'stu', 'PGSC0003DMG400016318' => 'stu', 'PGSC0003DMG400016319' => 'stu', 'PGSC0003DMG400018074' => 'stu', 'Phvul.001G157700' => 'pvu', 'Phvul.002G148550' => 'pvu', 'Phvul.002G320200' => 'pvu', 'Phvul.003G089200' => 'pvu', 'Phvul.007G126000' => 'pvu', 'Phvul.007G126100' => 'pvu', 'Phvul.007G178000' => 'pvu', 'Phvul.007G178200' => 'pvu', 'Potri.002G043000' => 'ptr', 'Potri.002G043200' => 'ptr', 'Potri.003G123750' => 'ptr', 'Potri.005G055401' => 'ptr', 'Potri.005G219700' => 'ptr', 'Potri.005G220000' => 'ptr', 'Potri.008G161901' => 'ptr', 'Potri.008G162000' => 'ptr', 'Potri.008G162400' => 'ptr', 'Potri.010G076900' => 'ptr', 'Pp3c12_9180' => 'ppa', 'Pp3c13_19770' => 'ppa', 'Pp3c14_22950' => 'ppa', 'Pp3c16_12160' => 'ppa', 'Pp3c27_7820' => 'ppa', 'Pp3c2_3490' => 'ppa', 'Pp3c3_23700' => 'ppa', 'Pp3c3_36520' => 'ppa', 'Pp3c4_15250' => 'ppa', 'PRCOL_00007002' => 'pco', 'Prupe.1G030600' => 'ppe', 'Prupe.1G030700' => 'ppe', 'Prupe.6G345200' => 'ppe', 'Prupe.8G230300' => 'ppe', 'Prupe.8G230500' => 'ppe', 'Psat3g059600' => 'psa', 'Psat5g200920' => 'psa', 'Psat6g056440' => 'psa', 'Psat6g057360' => 'psa', 'Psat6g134120' => 'psa', 'Psat6g134160' => 'psa', 'Psat7g008640' => 'psa', 'Psat7g185240' => 'psa', 'PSO017G1330' => 'pso', 'PSO063G6097' => 'pso', 'PSO170G0835' => 'pso', 'PSO170G2499' => 'pso', 'PSO210G5058' => 'pso', 'PSO210G6154' => 'pso', 'PSO585G0031' => 'pso', 'PSO832G0264' => 'pso', 'PSO832G4288' => 'pso', 'QL03p027355' => 'qlo', 'QL03p027430' => 'qlo', 'QL04p081380' => 'qlo', 'QL06p015642' => 'qlo', 'QL06p015650' => 'qlo', 'QL06p015686' => 'qlo', 'QL12p042927' => 'qlo', 'QL93p1863_0035' => 'qlo', 'RcHm_v2.0_Chr3g0450581' => 'rch', 'RcHm_v2.0_Chr4g0390371' => 'rch', 'RcHm_v2.0_Chr4g0390381' => 'rch', 'RcHm_v2.0_Chr4g0390491' => 'rch', 'RcHm_v2.0_Chr4g0390501' => 'rch', 'RcHm_v2.0_Chr6g0289231' => 'rch', 'Rhsim04G0190400' => 'rsi', 'Rhsim04G0190500' => 'rsi', 'Rhsim04G0190600' => 'rsi', 'Rhsim13G0031400' => 'rsi', 'Rhsim13G0165600' => 'rsi', 'RhsimUnG0114600' => 'rsi', 'RhsimUnG0114700' => 'rsi', 'Sabra02G0034800' => 'sbr', 'Sabra02G0035100' => 'sbr', 'Sabra05G0168600' => 'sbr', 'Sabra05G0168800' => 'sbr', 'Sabra08G0123700' => 'sbr', 'Sabra10G0031900' => 'sbr', 'Sabra13G0039000' => 'sbr', 'SalBow2G0782' => 'sbo', 'SalBow2G1403' => 'sbo', 'SalBow4G0074' => 'sbo', 'SalBow4G2635' => 'sbo', 'SalBow5G3010' => 'sbo', 'Sc05g0000870' => 'sci', 'Sc05g0000890' => 'sci', 'Sc13g0005000' => 'sci', 'Sc13g0005030' => 'sci', 'Sc19g0003790' => 'sci', 'Sc19g0003800' => 'sci', 'Sed0003467' => 'sed', 'Sed0009355' => 'sed', 'Sed0009894' => 'sed', 'Sed0011972' => 'sed', 'Sed0021483' => 'sed', 'Sed0021750' => 'sed', 'Sed0026279' => 'sed', 'SEGI_05312' => 'sgi', 'SEGI_10112' => 'sgi', 'SEGI_15835' => 'sgi', 'SEGI_30386' => 'sgi', 'SEGI_34122' => 'sgi', 'SEGI_35063' => 'sgi', 'SGA_v2.0_scaffold101G29794' => 'sas', 'SGA_v2.0_scaffold1G00573' => 'sas', 'SGA_v2.0_scaffold79G25637' => 'sas', 'SGA_v2.0_scaffold88G27283' => 'sas', 'SGA_v2.0_scaffold88G27285' => 'sas', 'SGA_v2.0_scaffold88G27331' => 'sas', 'SHI09937' => 'shi', 'SMO119G0302' => 'smo', 'SMO137G0231' => 'smo', 'SMO367G1151' => 'smo', 'Solyc02g082000.3' => 'sly', 'Solyc06g031670.3' => 'sly', 'Solyc06g053810.3' => 'sly', 'Solyc07g025457.1' => 'sly', 'Solyc08g059740.1' => 'sly', 'Solyc08g059750.3' => 'sly', 'Solyc09g083370.3' => 'sly', 'Solyc12g038950.3' => 'sly', 'Sopen02g026630' => 'spe', 'Sopen06g018930' => 'spe', 'Sopen06g018940' => 'spe', 'Sopen08g009460' => 'spe', 'Sopen09g032290' => 'spe', 'Sp1g03080' => 'spa', 'Sp1g03090' => 'spa', 'Sp1g05480' => 'spa', 'Sp2g07860' => 'spa', 'Sp2g08430' => 'spa', 'Sp2g08440' => 'spa', 'Sp2g26200' => 'spa', 'Sp4g13170' => 'spa', 'Sp6g33840' => 'spa', 'SpUn1204_0010' => 'spa', 'TAR365G0908' => 'tar', 'TAR381G1270' => 'tar', 'TAR381G1651' => 'tar', 'TAR625G1131' => 'tar', 'TAR633G0962' => 'tar', 'TAR633G1729' => 'tar', 'TAR633G1864' => 'tar', 'TAR636G0221' => 'tar', 'TAR636G0314' => 'tar', 'TAR636G3202' => 'tar', 'THA.LOC104800805' => 'tha', 'THA.LOC104801096' => 'tha', 'THA.LOC104801555' => 'tha', 'THA.LOC104808491' => 'tha', 'THA.LOC104808595' => 'tha', 'THA.LOC104815985' => 'tha', 'THA.LOC104822250' => 'tha', 'THA.LOC104826071' => 'tha', 'Thecc.01G265200' => 'tca', 'Thecc.01G265300' => 'tca', 'Thecc.01G265700' => 'tca', 'Thecc.03G109100' => 'tca', 'Thecc.04G245900' => 'tca', 'Thecc.04G246000' => 'tca', 'Thhalv10003334m.g' => 'esa', 'Thhalv10005508m.g' => 'esa', 'Thhalv10005643m.g' => 'esa', 'Thhalv10007316m.g' => 'esa', 'Thhalv10009006m.g' => 'esa', 'Thhalv10009309m.g' => 'esa', 'Thhalv10014917m.g' => 'esa', 'Thhalv10014919m.g' => 'esa', 'Thhalv10015393m.g' => 'esa', 'Thhalv10016515m.g' => 'esa', 'Thhalv10029242m.g' => 'esa', 'TPR.G16654' => 'tpr', 'TPR.G20589' => 'tpr', 'TPR.G23029' => 'tpr', 'TPR.G27731' => 'tpr', 'TPR.G28889' => 'tpr', 'TPR.G28899' => 'tpr', 'TPR.G30846' => 'tpr', 'TPR.G5452' => 'tpr', 'TPR.G5713' => 'tpr', 'TPR.G9046' => 'tpr', 'TPR.G9061' => 'tpr', 'TWI09G1075' => 'twi', 'TWI12G0806' => 'twi', 'TWI18G0108' => 'twi', 'TWI53G1361' => 'twi', 'TWI73G0185' => 'twi', 'TWI73G0427' => 'twi', 'unitig_37.g12001' => 'ugi', 'unitig_747.g21660' => 'ugi', 'unitig_748.g7232' => 'ugi', 'unitig_748.g7315' => 'ugi', 'unitig_85.g27262' => 'ugi', 'unitig_92.g28220' => 'ugi', 'vmacro02632' => 'vma', 'vmacro08410' => 'vma', 'vmacro08411' => 'vma', 'vmacro15407' => 'vma', 'VMungo0251G3619' => 'vmu', 'VMungo0720G1204' => 'vmu', 'VMungo0720G1918' => 'vmu', 'VMungo0720G2387' => 'vmu', 'VMungo0720G2961' => 'vmu', 'VMungo1215G2154' => 'vmu', 'VMungo1383G2411' => 'vmu', 'Zm00001eb051130' => 'zma', 'Zm00001eb116830' => 'zma', 'Zm00001eb116850' => 'zma', 'Zm00001eb151740' => 'zma', 'Zm00001eb292360' => 'zma', 'Zm00001eb301640' => 'zma' ), 'gf_id' => 'HOM05D000856', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000856' ), 'data_identifier' => 'HOM05D000856', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000856', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p00010' => 'bna', 'A03p04160' => 'bna', 'A03p17160' => 'bna', 'A04p23370' => 'bna', 'A05p14860' => 'bna', 'A08p37020' => 'bna', 'A09p08050' => 'bna', 'A09p66800' => 'bna', 'A09p67940' => 'bna', 'A10p02680' => 'bna', 'A10p05320' => 'bna', 'Aa31LG1G20560' => 'aar', 'Aa31LG1G20610' => 'aar', 'Aa31LG1G7810' => 'aar', 'Aa31LG5G3590' => 'aar', 'Aa31LG5G6140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3819' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4683' => 'aag', 'Actinidia04480' => 'ach', 'Actinidia05466' => 'ach', 'Actinidia08445' => 'ach', 'Actinidia21170' => 'ach', 'Actinidia24812' => 'ach', 'Actinidia24951' => 'ach', 'Actinidia40088' => 'ach', 'Ah.02g111660' => 'amhyb', 'Ah.11g048900' => 'amhyb', 'Ah.11g049910' => 'amhyb', 'AL1G13870' => 'aly', 'AL1G13880' => 'aly', 'AL1G16760' => 'aly', 'AL390U10020' => 'aly', 'AL4G25520' => 'aly', 'AL6G19890' => 'aly', 'AL6G19900' => 'aly', 'AL6G19910' => 'aly', 'AL8G40100' => 'aly', 'Aqoxy2G03562' => 'aox', 'Aqoxy5G00316' => 'aox', 'Aqoxy5G00926' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1628KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1H403S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2FU6SJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.882I6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8YRY2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YN1SN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AF70II' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZA8L1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F916KL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHRD8H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KTZ8QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S22EMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8M29T' => 'arhy', 'AT1G04270' => 'ath', 'AT1G04280' => 'ath', 'AT1G06750' => 'ath', 'AT1G33850' => 'ath', 'AT2G30630' => 'ath', 'AT5G09490' => 'ath', 'AT5G09500' => 'ath', 'AT5G09510' => 'ath', 'AT5G43640' => 'ath', 'AT5G63070' => 'ath', 'ATR0605G315' => 'atr', 'Atru.chr11.175' => 'acertr', 'Atru.chr11.653' => 'acertr', 'Atru.chr3.1616' => 'acertr', 'Atru.chr4.2230' => 'acertr', 'Atru.chr4.2232' => 'acertr', 'Atru.chr5.1598' => 'acertr', 'Atru.chr5.1600' => 'acertr', 'Atru.chr5.2188' => 'acertr', 'AUR62008326' => 'cqu', 'AUR62011922' => 'cqu', 'AUR62011924' => 'cqu', 'AUR62021771' => 'cqu', 'AUR62032237' => 'cqu', 'AUR62032240' => 'cqu', 'BcaB01g05572' => 'bca', 'BcaB02g10337' => 'bca', 'BcaB04g19944' => 'bca', 'BcaB05g21548' => 'bca', 'BcaB05g21549' => 'bca', 'BcaB05g23227' => 'bca', 'BcaB06g26256' => 'bca', 'BcaB06g26257' => 'bca', 'BcaB06g28379' => 'bca', 'BcaC02g11159' => 'bca', 'BcaC03g13258' => 'bca', 'BcaC03g13259' => 'bca', 'BcaC05g24456' => 'bca', 'BcaC05g24457' => 'bca', 'BcaC07g36922' => 'bca', 'BcaC07g36923' => 'bca', 'BcaC07g42050' => 'bca', 'BcaC07g42176' => 'bca', 'BcaC07g42195' => 'bca', 'BcaC07g42196' => 'bca', 'BcaNung06674' => 'bca', 'BolC2t06351H' => 'bol', 'BolC2t06352H' => 'bol', 'BolC3t12993H' => 'bol', 'BolC4t23525H' => 'bol', 'BolC4t27475H' => 'bol', 'BolC5t29025H' => 'bol', 'BolC5t29026H' => 'bol', 'BolC8t46898H' => 'bol', 'BolC8t46899H' => 'bol', 'BolC8t52630H' => 'bol', 'BolC8t52765H' => 'bol', 'BolC9t53824H' => 'bol', 'BraA03t09760Z' => 'bra', 'BraA03t10990Z' => 'bra', 'BraA05t20413Z' => 'bra', 'BraA08t35602Z' => 'bra', 'BraA09t36458Z' => 'bra', 'BraA09t42018Z' => 'bra', 'BraA09t42129Z' => 'bra', 'BraA10t42536Z' => 'bra', 'BraA10t42537Z' => 'bra', 'C01p10690' => 'bna', 'C02p03890' => 'bna', 'C02p03900' => 'bna', 'C03p04620' => 'bna', 'C04p19870' => 'bna', 'C04p59670' => 'bna', 'C05p02460' => 'bna', 'C05p02470' => 'bna', 'C08p00980' => 'bna', 'C08p00990' => 'bna', 'C08p51030' => 'bna', 'C08p52360' => 'bna', 'C09p09120' => 'bna', 'CAN.G19.15' => 'can', 'CAN.G251.10' => 'can', 'CAN.G251.9' => 'can', 'CAN.G398.24' => 'can', 'CAN.G410.32' => 'can', 'CAN.G881.2' => 'can', 'CANSAT01G3025' => 'cansat', 'CANSAT78G1211' => 'cansat', 'CANSAT78G1218' => 'cansat', 'CANSAT78G1521' => 'cansat', 'CANSAT78G1670' => 'cansat', 'CARHR003600' => 'chi', 'CARHR003610' => 'chi', 'CARHR006290' => 'chi', 'CARHR006430' => 'chi', 'CARHR124110' => 'chi', 'CARHR203870' => 'chi', 'CARHR203880' => 'chi', 'CARHR203890' => 'chi', 'CARHR276880' => 'chi', 'Carub.0001s0346' => 'cru', 'Carub.0001s0347' => 'cru', 'Carub.0001s0607' => 'cru', 'Carub.0003s2768' => 'cru', 'Carub.0003s2769' => 'cru', 'Carub.0004s1178' => 'cru', 'Carub.0006s0806' => 'cru', 'Carub.0006s0807' => 'cru', 'Carub.0006s0808' => 'cru', 'Carub.0008s0501' => 'cru', 'Carub.0008s2379' => 'cru', 'Ca_08655_v3' => 'car', 'Ca_08922_v3' => 'car', 'Ca_08923_v3' => 'car', 'Ca_09119_v3' => 'car', 'Ca_09703_v3' => 'car', 'Ca_09705_v3' => 'car', 'Ca_09835_v3' => 'car', 'Ca_26403_v3' => 'car', 'Ca_30719_v3' => 'car', 'CBR_g17958' => 'cbr', 'CBR_g40516' => 'cbr', 'Cc00_g05350' => 'ccan', 'Cc01_g18690' => 'ccan', 'Cc03_g04830' => 'ccan', 'Cc03_g04850' => 'ccan', 'CDE02G4469' => 'cde', 'CDE06G0883' => 'cde', 'CDE06G1295' => 'cde', 'CDE06G1390' => 'cde', 'CDE07G0584' => 'cde', 'CDE07G1084' => 'cde', 'CDE08G1259' => 'cde', 'Cfa002341' => 'cfa', 'Cfa024337' => 'cfa', 'Ciclev10004749m.g' => 'ccl', 'Ciclev10006127m.g' => 'ccl', 'Ciclev10019720m.g' => 'ccl', 'Ciclev10022652m.g' => 'ccl', 'CiPaw.01G190400' => 'cil', 'CiPaw.01G190500' => 'cil', 'CiPaw.02G116400' => 'cil', 'CiPaw.02G116500' => 'cil', 'CiPaw.04G183000' => 'cil', 'CiPaw.04G183300' => 'cil', 'ClCG05G004610' => 'cla', 'ClCG05G004620' => 'cla', 'ClCG06G006730' => 'cla', 'ClCG06G006740' => 'cla', 'ClCG11G003690' => 'cla', 'COL.COLO4_08276' => 'col', 'COL.COLO4_08277' => 'col', 'COL.COLO4_15787' => 'col', 'COL.COLO4_15789' => 'col', 'Cpa.g.c44815' => 'cpa', 'Cpa.g.sc52.144' => 'cpa', 'Cpa.g.sc58.46' => 'cpa', 'Cpa.g.sc58.47' => 'cpa', 'Cre08.g360900' => 'cre', 'CsaV3_2G013030' => 'csa', 'CsaV3_2G013050' => 'csa', 'CsaV3_2G015620' => 'csa', 'CsaV3_3G012590' => 'csa', 'CsaV3_3G012600' => 'csa', 'CSS0001641' => 'camsi', 'CSS0008310' => 'camsi', 'CSS0013011' => 'camsi', 'CSS0017147' => 'camsi', 'CSS0022970' => 'camsi', 'CSS0025655' => 'camsi', 'CSS0028665' => 'camsi', 'CSS0029117' => 'camsi', 'CSS0032024' => 'camsi', 'CSS0039681' => 'camsi', 'CSS0046516' => 'camsi', 'CSS0050307' => 'camsi', 'DCAR_005871' => 'dca', 'DCAR_007342' => 'dca', 'DCAR_024228' => 'dca', 'DCAR_027277' => 'dca', 'DCAR_030718' => 'dca', 'Dinv20287' => 'din', 'Dinv22461' => 'din', 'Dinv22464' => 'din', 'Dinv29912' => 'din', 'Dinv29913' => 'din', 'Dinv34580' => 'din', 'Dinv34582' => 'din', 'Dinv44632' => 'din', 'Duzib052G0266' => 'dzi', 'Duzib133G0907' => 'dzi', 'Duzib133G1034' => 'dzi', 'Duzib138G0207' => 'dzi', 'Duzib138G0491' => 'dzi', 'Duzib151G0812' => 'dzi', 'Duzib151G1166' => 'dzi', 'Duzib168G0192' => 'dzi', 'Duzib211G0077' => 'dzi', 'Duzib212G0429' => 'dzi', 'Duzib212G0472' => 'dzi', 'ECA233G2617' => 'eca', 'ECA236G4188' => 'eca', 'ECA240G0936' => 'eca', 'ECA240G1129' => 'eca', 'ECA247G0623' => 'eca', 'EL10Ac5g10451' => 'bvu', 'EL10Ac5g10453' => 'bvu', 'EL10Ac5g10894' => 'bvu', 'Eucgr.H00192' => 'egr', 'Eucgr.H00193' => 'egr', 'Eucgr.H00194' => 'egr', 'Eucgr.J01562' => 'egr', 'Eucgr.K03301' => 'egr', 'FAN02G0632' => 'fan', 'FAN05G5378' => 'fan', 'FAN09G3247' => 'fan', 'FAN12G0435' => 'fan', 'FAN12G2426' => 'fan', 'FAN14G1707' => 'fan', 'FAN14G4725' => 'fan', 'FAN15G2071' => 'fan', 'FAN17G3065' => 'fan', 'FAN19G1376' => 'fan', 'FAN20G0354' => 'fan', 'FAN20G2429' => 'fan', 'FAN20G2658' => 'fan', 'FAN24G2343' => 'fan', 'FAN27G2362' => 'fan', 'FAN28G1765' => 'fan', 'FvH4_1g16020' => 'fve', 'FvH4_2g04890' => 'fve', 'FvH4_2g22270' => 'fve', 'FvH4_4g02630' => 'fve', 'FvH4_4g02640' => 'fve', 'FvH4_6g02650' => 'fve', 'Glyma.02G140600' => 'gma', 'Glyma.03G159900' => 'gma', 'Glyma.05G234800' => 'gma', 'Glyma.07G269600' => 'gma', 'Glyma.08G042300' => 'gma', 'Glyma.10G033500' => 'gma', 'Glyma.10G185200' => 'gma', 'Glyma.17G004300' => 'gma', 'Glyma.19G161900' => 'gma', 'Glyma.20G205100' => 'gma', 'Glyma.20G205200' => 'gma', 'Gohir.A01G139101' => 'ghi', 'Gohir.A02G035600' => 'ghi', 'Gohir.A02G117901' => 'ghi', 'Gohir.A07G210100' => 'ghi', 'Gohir.A07G210200' => 'ghi', 'Gohir.A08G061100' => 'ghi', 'Gohir.A09G223000' => 'ghi', 'Gohir.A09G223100' => 'ghi', 'Gohir.A10G113900' => 'ghi', 'Gohir.A10G114000' => 'ghi', 'Gohir.D02G042300' => 'ghi', 'Gohir.D07G216100' => 'ghi', 'Gohir.D07G216200' => 'ghi', 'Gohir.D08G070400' => 'ghi', 'Gohir.D09G225000' => 'ghi', 'Gohir.D09G225100' => 'ghi', 'Gohir.D10G152300' => 'ghi', 'Gohir.D10G153200' => 'ghi', 'Gohir.D11G133701' => 'ghi', 'Gorai.004G074100' => 'gra', 'Gorai.005G046800' => 'gra', 'Gorai.006G246500' => 'gra', 'Gorai.006G246600' => 'gra', 'Gorai.007G142900' => 'gra', 'Gorai.011G171000' => 'gra', 'Gorai.011G171100' => 'gra', 'Gorai.013G104300' => 'gra', 'Gorai.013G104400' => 'gra', 'GSVIVG01000754001' => 'vvi', 'GSVIVG01000756001' => 'vvi', 'GSVIVG01010903001' => 'vvi', 'GSVIVG01017623001' => 'vvi', 'GSVIVG01018113001' => 'vvi', 'GSVIVG01018116001' => 'vvi', 'GSVIVG01018118001' => 'vvi', 'HanXRQChr03g0076211' => 'han', 'HanXRQChr03g0092431' => 'han', 'HanXRQChr03g0092441' => 'han', 'HanXRQChr03g0092591' => 'han', 'HanXRQChr03g0092671' => 'han', 'HanXRQChr03g0092681' => 'han', 'HanXRQChr03g0092691' => 'han', 'HanXRQChr03g0092701' => 'han', 'HanXRQChr03g0092721' => 'han', 'HanXRQChr03g0092731' => 'han', 'HanXRQChr04g0113681' => 'han', 'HanXRQChr10g0281371' => 'han', 'HanXRQChr11g0337141' => 'han', 'HanXRQChr13g0424521' => 'han', 'HanXRQChr13g0424531' => 'han', 'HanXRQChr13g0424541' => 'han', 'HanXRQChr16g0498221' => 'han', 'Haze_04377' => 'cav', 'Haze_11298' => 'cav', 'Haze_24547' => 'cav', 'Haze_24550' => 'cav', 'Haze_26587' => 'cav', 'Hma1.2p1_0650F.1_g195410' => 'hma', 'Hma1.2p1_0893F.1_g233470' => 'hma', 'HPP92_006508' => 'vpl', 'HPP92_024780' => 'vpl', 'Hund02688' => 'sun', 'Hund09380' => 'sun', 'Hund09381' => 'sun', 'Hund09832' => 'sun', 'Hund09833' => 'sun', 'Hund11351' => 'sun', 'Hund11513' => 'sun', 'Lalb_Chr06g0162591' => 'lal', 'Lalb_Chr06g0162601' => 'lal', 'Lalb_Chr06g0169321' => 'lal', 'Lalb_Chr09g0330951' => 'lal', 'Lalb_Chr16g0387631' => 'lal', 'Lalb_Chr21g0306241' => 'lal', 'Lalb_Chr25g0290051' => 'lal', 'Lalb_Chr25g0290061' => 'lal', 'Lalb_Chr25g0290071' => 'lal', 'Lj1g0003876' => 'lja', 'Lj1P1207T36' => 'lonja', 'Lj2C1156G12' => 'lonja', 'Lj3A793G39' => 'lonja', 'Lj3C580G2' => 'lonja', 'Lj3C780G2' => 'lonja', 'Lj3C780T4' => 'lonja', 'Lj3C793G9' => 'lonja', 'Lj4g0012960' => 'lja', 'Lj5g0021252' => 'lja', 'Lj5g0021484' => 'lja', 'Lj5g0024528' => 'lja', 'Lj6A399T12' => 'lonja', 'Lj6A656G65' => 'lonja', 'Lsat_1_v5_gn_3_125500' => 'lsa', 'Lsat_1_v5_gn_3_125540' => 'lsa', 'Lsat_1_v5_gn_5_72701' => 'lsa', 'Lsat_1_v5_gn_8_91560' => 'lsa', 'Lsat_1_v5_gn_9_9640' => 'lsa', 'Manes.01G200600' => 'mes', 'Manes.01G200700' => 'mes', 'Manes.03G168900' => 'mes', 'Manes.03G169000' => 'mes', 'Manes.05G085801' => 'mes', 'Manes.05G086200' => 'mes', 'Manes.15G036700' => 'mes', 'Manes.15G036900' => 'mes', 'Mapoly0004s0172' => 'mpo', 'Mapoly0023s0001' => 'mpo', 'Mapoly0142s0012' => 'mpo', 'MBI01_g32854_MAGBIO' => 'mbi', 'MBI11_g24427_MAGBIO' => 'mbi', 'MBI11_g47319_MAGBIO' => 'mbi', 'MCO01G433' => 'mco', 'MD00G1187800' => 'mdo', 'MD04G1226500' => 'mdo', 'MD05G1203900' => 'mdo', 'MD10G1191100' => 'mdo', 'MD12G1243500' => 'mdo', 'MD13G1207000' => 'mdo', 'MD13G1207100' => 'mdo', 'MD16G1208600' => 'mdo', 'Medtr1g050352' => 'mtr', 'Medtr1g070385' => 'mtr', 'Medtr1g070450' => 'mtr', 'Medtr1g075200' => 'mtr', 'Medtr1g075250' => 'mtr', 'Medtr1g075260' => 'mtr', 'Medtr1g475250' => 'mtr', 'Medtr4g075450' => 'mtr', 'Medtr7g096300' => 'mtr', 'Medtr8g105110' => 'mtr', 'MELO3C006470.2' => 'cme', 'MELO3C006471.2' => 'cme', 'MELO3C020772.2' => 'cme', 'MELO3C026780.2' => 'cme', 'MELO3C026781.2' => 'cme', 'Migut.D00390' => 'egut', 'Migut.G00435' => 'egut', 'Migut.G00436' => 'egut', 'Migut.G00718' => 'egut', 'MSTRG.21891' => 'ama', 'MSTRG.26910' => 'ama', 'MSTRG.4099' => 'ama', 'MSTRG.9925' => 'ama', 'Nitab4.5_0000165g0010' => 'nta', 'Nitab4.5_0000209g0180' => 'nta', 'Nitab4.5_0000244g0440' => 'nta', 'Nitab4.5_0000525g0220' => 'nta', 'Nitab4.5_0001597g0020' => 'nta', 'Nitab4.5_0001878g0040' => 'nta', 'Nitab4.5_0001878g0060' => 'nta', 'Nitab4.5_0002838g0100' => 'nta', 'Nitab4.5_0002838g0120' => 'nta', 'Nitab4.5_0004798g0030' => 'nta', 'Nitab4.5_0005420g0010' => 'nta', 'Nitab4.5_0005507g0010' => 'nta', 'Nitab4.5_0005574g0020' => 'nta', 'Nitab4.5_0005838g0010' => 'nta', 'Nitab4.5_0010580g0020' => 'nta', 'Nn1g02599' => 'nnu', 'Nn1g02608' => 'nnu', 'Nn3g17742' => 'nnu', 'Nn3g19534' => 'nnu', 'Nn3g19535' => 'nnu', 'Oeu008790.1' => 'oeu', 'Oeu008792.1' => 'oeu', 'Oeu032590.1' => 'oeu', 'Oeu035349.1' => 'oeu', 'Oeu049791.1' => 'oeu', 'Os01g0774500' => 'osa', 'Os03g0628800' => 'osa', 'Os03g0798600' => 'osa', 'Os05g0508800' => 'osa', 'Peaxi162Scf00036g02018' => 'pax', 'Peaxi162Scf00578g00032' => 'pax', 'Peaxi162Scf00578g00317' => 'pax', 'Peaxi162Scf00785g00114' => 'pax', 'Peaxi162Scf00813g00119' => 'pax', 'Peaxi162Scf00906g00227' => 'pax', 'PGR004G0875' => 'pgr', 'PGR004G2424' => 'pgr', 'PGR031G1239' => 'pgr', 'PGR031G2474' => 'pgr', 'PGR044G0423' => 'pgr', 'PGSC0003DMG400001128' => 'stu', 'PGSC0003DMG400007336' => 'stu', 'PGSC0003DMG400016318' => 'stu', 'PGSC0003DMG400016319' => 'stu', 'PGSC0003DMG400018074' => 'stu', 'Phvul.001G157700' => 'pvu', 'Phvul.002G148550' => 'pvu', 'Phvul.002G320200' => 'pvu', 'Phvul.003G089200' => 'pvu', 'Phvul.007G126000' => 'pvu', 'Phvul.007G126100' => 'pvu', 'Phvul.007G178000' => 'pvu', 'Phvul.007G178200' => 'pvu', 'Potri.002G043000' => 'ptr', 'Potri.002G043200' => 'ptr', 'Potri.003G123750' => 'ptr', 'Potri.005G055401' => 'ptr', 'Potri.005G219700' => 'ptr', 'Potri.005G220000' => 'ptr', 'Potri.008G161901' => 'ptr', 'Potri.008G162000' => 'ptr', 'Potri.008G162400' => 'ptr', 'Potri.010G076900' => 'ptr', 'Pp3c12_9180' => 'ppa', 'Pp3c13_19770' => 'ppa', 'Pp3c14_22950' => 'ppa', 'Pp3c16_12160' => 'ppa', 'Pp3c27_7820' => 'ppa', 'Pp3c2_3490' => 'ppa', 'Pp3c3_23700' => 'ppa', 'Pp3c3_36520' => 'ppa', 'Pp3c4_15250' => 'ppa', 'PRCOL_00007002' => 'pco', 'Prupe.1G030600' => 'ppe', 'Prupe.1G030700' => 'ppe', 'Prupe.6G345200' => 'ppe', 'Prupe.8G230300' => 'ppe', 'Prupe.8G230500' => 'ppe', 'Psat3g059600' => 'psa', 'Psat5g200920' => 'psa', 'Psat6g056440' => 'psa', 'Psat6g057360' => 'psa', 'Psat6g134120' => 'psa', 'Psat6g134160' => 'psa', 'Psat7g008640' => 'psa', 'Psat7g185240' => 'psa', 'PSO017G1330' => 'pso', 'PSO063G6097' => 'pso', 'PSO170G0835' => 'pso', 'PSO170G2499' => 'pso', 'PSO210G5058' => 'pso', 'PSO210G6154' => 'pso', 'PSO585G0031' => 'pso', 'PSO832G0264' => 'pso', 'PSO832G4288' => 'pso', 'QL03p027355' => 'qlo', 'QL03p027430' => 'qlo', 'QL04p081380' => 'qlo', 'QL06p015642' => 'qlo', 'QL06p015650' => 'qlo', 'QL06p015686' => 'qlo', 'QL12p042927' => 'qlo', 'QL93p1863_0035' => 'qlo', 'RcHm_v2.0_Chr3g0450581' => 'rch', 'RcHm_v2.0_Chr4g0390371' => 'rch', 'RcHm_v2.0_Chr4g0390381' => 'rch', 'RcHm_v2.0_Chr4g0390491' => 'rch', 'RcHm_v2.0_Chr4g0390501' => 'rch', 'RcHm_v2.0_Chr6g0289231' => 'rch', 'Rhsim04G0190400' => 'rsi', 'Rhsim04G0190500' => 'rsi', 'Rhsim04G0190600' => 'rsi', 'Rhsim13G0031400' => 'rsi', 'Rhsim13G0165600' => 'rsi', 'RhsimUnG0114600' => 'rsi', 'RhsimUnG0114700' => 'rsi', 'Sabra02G0034800' => 'sbr', 'Sabra02G0035100' => 'sbr', 'Sabra05G0168600' => 'sbr', 'Sabra05G0168800' => 'sbr', 'Sabra08G0123700' => 'sbr', 'Sabra10G0031900' => 'sbr', 'Sabra13G0039000' => 'sbr', 'SalBow2G0782' => 'sbo', 'SalBow2G1403' => 'sbo', 'SalBow4G0074' => 'sbo', 'SalBow4G2635' => 'sbo', 'SalBow5G3010' => 'sbo', 'Sc05g0000870' => 'sci', 'Sc05g0000890' => 'sci', 'Sc13g0005000' => 'sci', 'Sc13g0005030' => 'sci', 'Sc19g0003790' => 'sci', 'Sc19g0003800' => 'sci', 'Sed0003467' => 'sed', 'Sed0009355' => 'sed', 'Sed0009894' => 'sed', 'Sed0011972' => 'sed', 'Sed0021483' => 'sed', 'Sed0021750' => 'sed', 'Sed0026279' => 'sed', 'SEGI_05312' => 'sgi', 'SEGI_10112' => 'sgi', 'SEGI_15835' => 'sgi', 'SEGI_30386' => 'sgi', 'SEGI_34122' => 'sgi', 'SEGI_35063' => 'sgi', 'SGA_v2.0_scaffold101G29794' => 'sas', 'SGA_v2.0_scaffold1G00573' => 'sas', 'SGA_v2.0_scaffold79G25637' => 'sas', 'SGA_v2.0_scaffold88G27283' => 'sas', 'SGA_v2.0_scaffold88G27285' => 'sas', 'SGA_v2.0_scaffold88G27331' => 'sas', 'SHI09937' => 'shi', 'SMO119G0302' => 'smo', 'SMO137G0231' => 'smo', 'SMO367G1151' => 'smo', 'Solyc02g082000.3' => 'sly', 'Solyc06g031670.3' => 'sly', 'Solyc06g053810.3' => 'sly', 'Solyc07g025457.1' => 'sly', 'Solyc08g059740.1' => 'sly', 'Solyc08g059750.3' => 'sly', 'Solyc09g083370.3' => 'sly', 'Solyc12g038950.3' => 'sly', 'Sopen02g026630' => 'spe', 'Sopen06g018930' => 'spe', 'Sopen06g018940' => 'spe', 'Sopen08g009460' => 'spe', 'Sopen09g032290' => 'spe', 'Sp1g03080' => 'spa', 'Sp1g03090' => 'spa', 'Sp1g05480' => 'spa', 'Sp2g07860' => 'spa', 'Sp2g08430' => 'spa', 'Sp2g08440' => 'spa', 'Sp2g26200' => 'spa', 'Sp4g13170' => 'spa', 'Sp6g33840' => 'spa', 'SpUn1204_0010' => 'spa', 'TAR365G0908' => 'tar', 'TAR381G1270' => 'tar', 'TAR381G1651' => 'tar', 'TAR625G1131' => 'tar', 'TAR633G0962' => 'tar', 'TAR633G1729' => 'tar', 'TAR633G1864' => 'tar', 'TAR636G0221' => 'tar', 'TAR636G0314' => 'tar', 'TAR636G3202' => 'tar', 'THA.LOC104800805' => 'tha', 'THA.LOC104801096' => 'tha', 'THA.LOC104801555' => 'tha', 'THA.LOC104808491' => 'tha', 'THA.LOC104808595' => 'tha', 'THA.LOC104815985' => 'tha', 'THA.LOC104822250' => 'tha', 'THA.LOC104826071' => 'tha', 'Thecc.01G265200' => 'tca', 'Thecc.01G265300' => 'tca', 'Thecc.01G265700' => 'tca', 'Thecc.03G109100' => 'tca', 'Thecc.04G245900' => 'tca', 'Thecc.04G246000' => 'tca', 'Thhalv10003334m.g' => 'esa', 'Thhalv10005508m.g' => 'esa', 'Thhalv10005643m.g' => 'esa', 'Thhalv10007316m.g' => 'esa', 'Thhalv10009006m.g' => 'esa', 'Thhalv10009309m.g' => 'esa', 'Thhalv10014917m.g' => 'esa', 'Thhalv10014919m.g' => 'esa', 'Thhalv10015393m.g' => 'esa', 'Thhalv10016515m.g' => 'esa', 'Thhalv10029242m.g' => 'esa', 'TPR.G16654' => 'tpr', 'TPR.G20589' => 'tpr', 'TPR.G23029' => 'tpr', 'TPR.G27731' => 'tpr', 'TPR.G28889' => 'tpr', 'TPR.G28899' => 'tpr', 'TPR.G30846' => 'tpr', 'TPR.G5452' => 'tpr', 'TPR.G5713' => 'tpr', 'TPR.G9046' => 'tpr', 'TPR.G9061' => 'tpr', 'TWI09G1075' => 'twi', 'TWI12G0806' => 'twi', 'TWI18G0108' => 'twi', 'TWI53G1361' => 'twi', 'TWI73G0185' => 'twi', 'TWI73G0427' => 'twi', 'unitig_37.g12001' => 'ugi', 'unitig_747.g21660' => 'ugi', 'unitig_748.g7232' => 'ugi', 'unitig_748.g7315' => 'ugi', 'unitig_85.g27262' => 'ugi', 'unitig_92.g28220' => 'ugi', 'vmacro02632' => 'vma', 'vmacro08410' => 'vma', 'vmacro08411' => 'vma', 'vmacro15407' => 'vma', 'VMungo0251G3619' => 'vmu', 'VMungo0720G1204' => 'vmu', 'VMungo0720G1918' => 'vmu', 'VMungo0720G2387' => 'vmu', 'VMungo0720G2961' => 'vmu', 'VMungo1215G2154' => 'vmu', 'VMungo1383G2411' => 'vmu', 'Zm00001eb051130' => 'zma', 'Zm00001eb116830' => 'zma', 'Zm00001eb116850' => 'zma', 'Zm00001eb151740' => 'zma', 'Zm00001eb292360' => 'zma', 'Zm00001eb301640' => 'zma' ) $gf_id = 'HOM05D000856' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000856' ) $data_identifier = 'HOM05D000856' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 13, 'ath' => (int) 10, 'atr' => (int) 1, 'acertr' => (int) 8, 'cqu' => (int) 6, 'bca' => (int) 21, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 11, 'car' => (int) 9, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 8, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 5, 'fan' => (int) 16, 'fve' => (int) 6, 'gma' => (int) 11, 'ghi' => (int) 19, 'gra' => (int) 9, 'vvi' => (int) 7, 'han' => (int) 17, 'cav' => (int) 5, 'hma' => (int) 2, 'vpl' => (int) 2, 'sun' => (int) 7, 'lal' => (int) 9, 'lja' => (int) 5, 'lonja' => (int) 9, 'lsa' => (int) 5, 'mes' => (int) 8, 'mpo' => (int) 3, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 10, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 15, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 9, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 9, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 6, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 5, 'spa' => (int) 10, 'tar' => (int) 10, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 11, 'tpr' => (int) 11, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 4, 'vmu' => (int) 7, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb301640' $species_info = array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ) $local_species = 'mpo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000856', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p00010' => 'bna', 'A03p04160' => 'bna', 'A03p17160' => 'bna', 'A04p23370' => 'bna', 'A05p14860' => 'bna', 'A08p37020' => 'bna', 'A09p08050' => 'bna', 'A09p66800' => 'bna', 'A09p67940' => 'bna', 'A10p02680' => 'bna', 'A10p05320' => 'bna', 'Aa31LG1G20560' => 'aar', 'Aa31LG1G20610' => 'aar', 'Aa31LG1G7810' => 'aar', 'Aa31LG5G3590' => 'aar', 'Aa31LG5G6140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3819' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4683' => 'aag', 'Actinidia04480' => 'ach', 'Actinidia05466' => 'ach', 'Actinidia08445' => 'ach', 'Actinidia21170' => 'ach', 'Actinidia24812' => 'ach', 'Actinidia24951' => 'ach', 'Actinidia40088' => 'ach', 'Ah.02g111660' => 'amhyb', 'Ah.11g048900' => 'amhyb', 'Ah.11g049910' => 'amhyb', 'AL1G13870' => 'aly', 'AL1G13880' => 'aly', 'AL1G16760' => 'aly', 'AL390U10020' => 'aly', 'AL4G25520' => 'aly', 'AL6G19890' => 'aly', 'AL6G19900' => 'aly', 'AL6G19910' => 'aly', 'AL8G40100' => 'aly', 'Aqoxy2G03562' => 'aox', 'Aqoxy5G00316' => 'aox', 'Aqoxy5G00926' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1628KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1H403S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2FU6SJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.882I6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8YRY2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YN1SN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AF70II' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZA8L1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F916KL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHRD8H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KTZ8QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S22EMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8M29T' => 'arhy', 'AT1G04270' => 'ath', 'AT1G04280' => 'ath', 'AT1G06750' => 'ath', 'AT1G33850' => 'ath', 'AT2G30630' => 'ath', 'AT5G09490' => 'ath', 'AT5G09500' => 'ath', 'AT5G09510' => 'ath', 'AT5G43640' => 'ath', 'AT5G63070' => 'ath', 'ATR0605G315' => 'atr', 'Atru.chr11.175' => 'acertr', 'Atru.chr11.653' => 'acertr', 'Atru.chr3.1616' => 'acertr', 'Atru.chr4.2230' => 'acertr', 'Atru.chr4.2232' => 'acertr', 'Atru.chr5.1598' => 'acertr', 'Atru.chr5.1600' => 'acertr', 'Atru.chr5.2188' => 'acertr', 'AUR62008326' => 'cqu', 'AUR62011922' => 'cqu', 'AUR62011924' => 'cqu', 'AUR62021771' => 'cqu', 'AUR62032237' => 'cqu', 'AUR62032240' => 'cqu', 'BcaB01g05572' => 'bca', 'BcaB02g10337' => 'bca', 'BcaB04g19944' => 'bca', 'BcaB05g21548' => 'bca', 'BcaB05g21549' => 'bca', 'BcaB05g23227' => 'bca', 'BcaB06g26256' => 'bca', 'BcaB06g26257' => 'bca', 'BcaB06g28379' => 'bca', 'BcaC02g11159' => 'bca', 'BcaC03g13258' => 'bca', 'BcaC03g13259' => 'bca', 'BcaC05g24456' => 'bca', 'BcaC05g24457' => 'bca', 'BcaC07g36922' => 'bca', 'BcaC07g36923' => 'bca', 'BcaC07g42050' => 'bca', 'BcaC07g42176' => 'bca', 'BcaC07g42195' => 'bca', 'BcaC07g42196' => 'bca', 'BcaNung06674' => 'bca', 'BolC2t06351H' => 'bol', 'BolC2t06352H' => 'bol', 'BolC3t12993H' => 'bol', 'BolC4t23525H' => 'bol', 'BolC4t27475H' => 'bol', 'BolC5t29025H' => 'bol', 'BolC5t29026H' => 'bol', 'BolC8t46898H' => 'bol', 'BolC8t46899H' => 'bol', 'BolC8t52630H' => 'bol', 'BolC8t52765H' => 'bol', 'BolC9t53824H' => 'bol', 'BraA03t09760Z' => 'bra', 'BraA03t10990Z' => 'bra', 'BraA05t20413Z' => 'bra', 'BraA08t35602Z' => 'bra', 'BraA09t36458Z' => 'bra', 'BraA09t42018Z' => 'bra', 'BraA09t42129Z' => 'bra', 'BraA10t42536Z' => 'bra', 'BraA10t42537Z' => 'bra', 'C01p10690' => 'bna', 'C02p03890' => 'bna', 'C02p03900' => 'bna', 'C03p04620' => 'bna', 'C04p19870' => 'bna', 'C04p59670' => 'bna', 'C05p02460' => 'bna', 'C05p02470' => 'bna', 'C08p00980' => 'bna', 'C08p00990' => 'bna', 'C08p51030' => 'bna', 'C08p52360' => 'bna', 'C09p09120' => 'bna', 'CAN.G19.15' => 'can', 'CAN.G251.10' => 'can', 'CAN.G251.9' => 'can', 'CAN.G398.24' => 'can', 'CAN.G410.32' => 'can', 'CAN.G881.2' => 'can', 'CANSAT01G3025' => 'cansat', 'CANSAT78G1211' => 'cansat', 'CANSAT78G1218' => 'cansat', 'CANSAT78G1521' => 'cansat', 'CANSAT78G1670' => 'cansat', 'CARHR003600' => 'chi', 'CARHR003610' => 'chi', 'CARHR006290' => 'chi', 'CARHR006430' => 'chi', 'CARHR124110' => 'chi', 'CARHR203870' => 'chi', 'CARHR203880' => 'chi', 'CARHR203890' => 'chi', 'CARHR276880' => 'chi', 'Carub.0001s0346' => 'cru', 'Carub.0001s0347' => 'cru', 'Carub.0001s0607' => 'cru', 'Carub.0003s2768' => 'cru', 'Carub.0003s2769' => 'cru', 'Carub.0004s1178' => 'cru', 'Carub.0006s0806' => 'cru', 'Carub.0006s0807' => 'cru', 'Carub.0006s0808' => 'cru', 'Carub.0008s0501' => 'cru', 'Carub.0008s2379' => 'cru', 'Ca_08655_v3' => 'car', 'Ca_08922_v3' => 'car', 'Ca_08923_v3' => 'car', 'Ca_09119_v3' => 'car', 'Ca_09703_v3' => 'car', 'Ca_09705_v3' => 'car', 'Ca_09835_v3' => 'car', 'Ca_26403_v3' => 'car', 'Ca_30719_v3' => 'car', 'CBR_g17958' => 'cbr', 'CBR_g40516' => 'cbr', 'Cc00_g05350' => 'ccan', 'Cc01_g18690' => 'ccan', 'Cc03_g04830' => 'ccan', 'Cc03_g04850' => 'ccan', 'CDE02G4469' => 'cde', 'CDE06G0883' => 'cde', 'CDE06G1295' => 'cde', 'CDE06G1390' => 'cde', 'CDE07G0584' => 'cde', 'CDE07G1084' => 'cde', 'CDE08G1259' => 'cde', 'Cfa002341' => 'cfa', 'Cfa024337' => 'cfa', 'Ciclev10004749m.g' => 'ccl', 'Ciclev10006127m.g' => 'ccl', 'Ciclev10019720m.g' => 'ccl', 'Ciclev10022652m.g' => 'ccl', 'CiPaw.01G190400' => 'cil', 'CiPaw.01G190500' => 'cil', 'CiPaw.02G116400' => 'cil', 'CiPaw.02G116500' => 'cil', 'CiPaw.04G183000' => 'cil', 'CiPaw.04G183300' => 'cil', 'ClCG05G004610' => 'cla', 'ClCG05G004620' => 'cla', 'ClCG06G006730' => 'cla', 'ClCG06G006740' => 'cla', 'ClCG11G003690' => 'cla', 'COL.COLO4_08276' => 'col', 'COL.COLO4_08277' => 'col', 'COL.COLO4_15787' => 'col', 'COL.COLO4_15789' => 'col', 'Cpa.g.c44815' => 'cpa', 'Cpa.g.sc52.144' => 'cpa', 'Cpa.g.sc58.46' => 'cpa', 'Cpa.g.sc58.47' => 'cpa', 'Cre08.g360900' => 'cre', 'CsaV3_2G013030' => 'csa', 'CsaV3_2G013050' => 'csa', 'CsaV3_2G015620' => 'csa', 'CsaV3_3G012590' => 'csa', 'CsaV3_3G012600' => 'csa', 'CSS0001641' => 'camsi', 'CSS0008310' => 'camsi', 'CSS0013011' => 'camsi', 'CSS0017147' => 'camsi', 'CSS0022970' => 'camsi', 'CSS0025655' => 'camsi', 'CSS0028665' => 'camsi', 'CSS0029117' => 'camsi', 'CSS0032024' => 'camsi', 'CSS0039681' => 'camsi', 'CSS0046516' => 'camsi', 'CSS0050307' => 'camsi', 'DCAR_005871' => 'dca', 'DCAR_007342' => 'dca', 'DCAR_024228' => 'dca', 'DCAR_027277' => 'dca', 'DCAR_030718' => 'dca', 'Dinv20287' => 'din', 'Dinv22461' => 'din', 'Dinv22464' => 'din', 'Dinv29912' => 'din', 'Dinv29913' => 'din', 'Dinv34580' => 'din', 'Dinv34582' => 'din', 'Dinv44632' => 'din', 'Duzib052G0266' => 'dzi', 'Duzib133G0907' => 'dzi', 'Duzib133G1034' => 'dzi', 'Duzib138G0207' => 'dzi', 'Duzib138G0491' => 'dzi', 'Duzib151G0812' => 'dzi', 'Duzib151G1166' => 'dzi', 'Duzib168G0192' => 'dzi', 'Duzib211G0077' => 'dzi', 'Duzib212G0429' => 'dzi', 'Duzib212G0472' => 'dzi', 'ECA233G2617' => 'eca', 'ECA236G4188' => 'eca', 'ECA240G0936' => 'eca', 'ECA240G1129' => 'eca', 'ECA247G0623' => 'eca', 'EL10Ac5g10451' => 'bvu', 'EL10Ac5g10453' => 'bvu', 'EL10Ac5g10894' => 'bvu', 'Eucgr.H00192' => 'egr', 'Eucgr.H00193' => 'egr', 'Eucgr.H00194' => 'egr', 'Eucgr.J01562' => 'egr', 'Eucgr.K03301' => 'egr', 'FAN02G0632' => 'fan', 'FAN05G5378' => 'fan', 'FAN09G3247' => 'fan', 'FAN12G0435' => 'fan', 'FAN12G2426' => 'fan', 'FAN14G1707' => 'fan', 'FAN14G4725' => 'fan', 'FAN15G2071' => 'fan', 'FAN17G3065' => 'fan', 'FAN19G1376' => 'fan', 'FAN20G0354' => 'fan', 'FAN20G2429' => 'fan', 'FAN20G2658' => 'fan', 'FAN24G2343' => 'fan', 'FAN27G2362' => 'fan', 'FAN28G1765' => 'fan', 'FvH4_1g16020' => 'fve', 'FvH4_2g04890' => 'fve', 'FvH4_2g22270' => 'fve', 'FvH4_4g02630' => 'fve', 'FvH4_4g02640' => 'fve', 'FvH4_6g02650' => 'fve', 'Glyma.02G140600' => 'gma', 'Glyma.03G159900' => 'gma', 'Glyma.05G234800' => 'gma', 'Glyma.07G269600' => 'gma', 'Glyma.08G042300' => 'gma', 'Glyma.10G033500' => 'gma', 'Glyma.10G185200' => 'gma', 'Glyma.17G004300' => 'gma', 'Glyma.19G161900' => 'gma', 'Glyma.20G205100' => 'gma', 'Glyma.20G205200' => 'gma', 'Gohir.A01G139101' => 'ghi', 'Gohir.A02G035600' => 'ghi', 'Gohir.A02G117901' => 'ghi', 'Gohir.A07G210100' => 'ghi', 'Gohir.A07G210200' => 'ghi', 'Gohir.A08G061100' => 'ghi', 'Gohir.A09G223000' => 'ghi', 'Gohir.A09G223100' => 'ghi', 'Gohir.A10G113900' => 'ghi', 'Gohir.A10G114000' => 'ghi', 'Gohir.D02G042300' => 'ghi', 'Gohir.D07G216100' => 'ghi', 'Gohir.D07G216200' => 'ghi', 'Gohir.D08G070400' => 'ghi', 'Gohir.D09G225000' => 'ghi', 'Gohir.D09G225100' => 'ghi', 'Gohir.D10G152300' => 'ghi', 'Gohir.D10G153200' => 'ghi', 'Gohir.D11G133701' => 'ghi', 'Gorai.004G074100' => 'gra', 'Gorai.005G046800' => 'gra', 'Gorai.006G246500' => 'gra', 'Gorai.006G246600' => 'gra', 'Gorai.007G142900' => 'gra', 'Gorai.011G171000' => 'gra', 'Gorai.011G171100' => 'gra', 'Gorai.013G104300' => 'gra', 'Gorai.013G104400' => 'gra', 'GSVIVG01000754001' => 'vvi', 'GSVIVG01000756001' => 'vvi', 'GSVIVG01010903001' => 'vvi', 'GSVIVG01017623001' => 'vvi', 'GSVIVG01018113001' => 'vvi', 'GSVIVG01018116001' => 'vvi', 'GSVIVG01018118001' => 'vvi', 'HanXRQChr03g0076211' => 'han', 'HanXRQChr03g0092431' => 'han', 'HanXRQChr03g0092441' => 'han', 'HanXRQChr03g0092591' => 'han', 'HanXRQChr03g0092671' => 'han', 'HanXRQChr03g0092681' => 'han', 'HanXRQChr03g0092691' => 'han', 'HanXRQChr03g0092701' => 'han', 'HanXRQChr03g0092721' => 'han', 'HanXRQChr03g0092731' => 'han', 'HanXRQChr04g0113681' => 'han', 'HanXRQChr10g0281371' => 'han', 'HanXRQChr11g0337141' => 'han', 'HanXRQChr13g0424521' => 'han', 'HanXRQChr13g0424531' => 'han', 'HanXRQChr13g0424541' => 'han', 'HanXRQChr16g0498221' => 'han', 'Haze_04377' => 'cav', 'Haze_11298' => 'cav', 'Haze_24547' => 'cav', 'Haze_24550' => 'cav', 'Haze_26587' => 'cav', 'Hma1.2p1_0650F.1_g195410' => 'hma', 'Hma1.2p1_0893F.1_g233470' => 'hma', 'HPP92_006508' => 'vpl', 'HPP92_024780' => 'vpl', 'Hund02688' => 'sun', 'Hund09380' => 'sun', 'Hund09381' => 'sun', 'Hund09832' => 'sun', 'Hund09833' => 'sun', 'Hund11351' => 'sun', 'Hund11513' => 'sun', 'Lalb_Chr06g0162591' => 'lal', 'Lalb_Chr06g0162601' => 'lal', 'Lalb_Chr06g0169321' => 'lal', 'Lalb_Chr09g0330951' => 'lal', 'Lalb_Chr16g0387631' => 'lal', 'Lalb_Chr21g0306241' => 'lal', 'Lalb_Chr25g0290051' => 'lal', 'Lalb_Chr25g0290061' => 'lal', 'Lalb_Chr25g0290071' => 'lal', 'Lj1g0003876' => 'lja', 'Lj1P1207T36' => 'lonja', 'Lj2C1156G12' => 'lonja', 'Lj3A793G39' => 'lonja', 'Lj3C580G2' => 'lonja', 'Lj3C780G2' => 'lonja', 'Lj3C780T4' => 'lonja', 'Lj3C793G9' => 'lonja', 'Lj4g0012960' => 'lja', 'Lj5g0021252' => 'lja', 'Lj5g0021484' => 'lja', 'Lj5g0024528' => 'lja', 'Lj6A399T12' => 'lonja', 'Lj6A656G65' => 'lonja', 'Lsat_1_v5_gn_3_125500' => 'lsa', 'Lsat_1_v5_gn_3_125540' => 'lsa', 'Lsat_1_v5_gn_5_72701' => 'lsa', 'Lsat_1_v5_gn_8_91560' => 'lsa', 'Lsat_1_v5_gn_9_9640' => 'lsa', 'Manes.01G200600' => 'mes', 'Manes.01G200700' => 'mes', 'Manes.03G168900' => 'mes', 'Manes.03G169000' => 'mes', 'Manes.05G085801' => 'mes', 'Manes.05G086200' => 'mes', 'Manes.15G036700' => 'mes', 'Manes.15G036900' => 'mes', 'Mapoly0004s0172' => 'mpo', 'Mapoly0023s0001' => 'mpo', 'Mapoly0142s0012' => 'mpo', 'MBI01_g32854_MAGBIO' => 'mbi', 'MBI11_g24427_MAGBIO' => 'mbi', 'MBI11_g47319_MAGBIO' => 'mbi', 'MCO01G433' => 'mco', 'MD00G1187800' => 'mdo', 'MD04G1226500' => 'mdo', 'MD05G1203900' => 'mdo', 'MD10G1191100' => 'mdo', 'MD12G1243500' => 'mdo', 'MD13G1207000' => 'mdo', 'MD13G1207100' => 'mdo', 'MD16G1208600' => 'mdo', 'Medtr1g050352' => 'mtr', 'Medtr1g070385' => 'mtr', 'Medtr1g070450' => 'mtr', 'Medtr1g075200' => 'mtr', 'Medtr1g075250' => 'mtr', 'Medtr1g075260' => 'mtr', 'Medtr1g475250' => 'mtr', 'Medtr4g075450' => 'mtr', 'Medtr7g096300' => 'mtr', 'Medtr8g105110' => 'mtr', 'MELO3C006470.2' => 'cme', 'MELO3C006471.2' => 'cme', 'MELO3C020772.2' => 'cme', 'MELO3C026780.2' => 'cme', 'MELO3C026781.2' => 'cme', 'Migut.D00390' => 'egut', 'Migut.G00435' => 'egut', 'Migut.G00436' => 'egut', 'Migut.G00718' => 'egut', 'MSTRG.21891' => 'ama', 'MSTRG.26910' => 'ama', 'MSTRG.4099' => 'ama', 'MSTRG.9925' => 'ama', 'Nitab4.5_0000165g0010' => 'nta', 'Nitab4.5_0000209g0180' => 'nta', 'Nitab4.5_0000244g0440' => 'nta', 'Nitab4.5_0000525g0220' => 'nta', 'Nitab4.5_0001597g0020' => 'nta', 'Nitab4.5_0001878g0040' => 'nta', 'Nitab4.5_0001878g0060' => 'nta', 'Nitab4.5_0002838g0100' => 'nta', 'Nitab4.5_0002838g0120' => 'nta', 'Nitab4.5_0004798g0030' => 'nta', 'Nitab4.5_0005420g0010' => 'nta', 'Nitab4.5_0005507g0010' => 'nta', 'Nitab4.5_0005574g0020' => 'nta', 'Nitab4.5_0005838g0010' => 'nta', 'Nitab4.5_0010580g0020' => 'nta', 'Nn1g02599' => 'nnu', 'Nn1g02608' => 'nnu', 'Nn3g17742' => 'nnu', 'Nn3g19534' => 'nnu', 'Nn3g19535' => 'nnu', 'Oeu008790.1' => 'oeu', 'Oeu008792.1' => 'oeu', 'Oeu032590.1' => 'oeu', 'Oeu035349.1' => 'oeu', 'Oeu049791.1' => 'oeu', 'Os01g0774500' => 'osa', 'Os03g0628800' => 'osa', 'Os03g0798600' => 'osa', 'Os05g0508800' => 'osa', 'Peaxi162Scf00036g02018' => 'pax', 'Peaxi162Scf00578g00032' => 'pax', 'Peaxi162Scf00578g00317' => 'pax', 'Peaxi162Scf00785g00114' => 'pax', 'Peaxi162Scf00813g00119' => 'pax', 'Peaxi162Scf00906g00227' => 'pax', 'PGR004G0875' => 'pgr', 'PGR004G2424' => 'pgr', 'PGR031G1239' => 'pgr', 'PGR031G2474' => 'pgr', 'PGR044G0423' => 'pgr', 'PGSC0003DMG400001128' => 'stu', 'PGSC0003DMG400007336' => 'stu', 'PGSC0003DMG400016318' => 'stu', 'PGSC0003DMG400016319' => 'stu', 'PGSC0003DMG400018074' => 'stu', 'Phvul.001G157700' => 'pvu', 'Phvul.002G148550' => 'pvu', 'Phvul.002G320200' => 'pvu', 'Phvul.003G089200' => 'pvu', 'Phvul.007G126000' => 'pvu', 'Phvul.007G126100' => 'pvu', 'Phvul.007G178000' => 'pvu', 'Phvul.007G178200' => 'pvu', 'Potri.002G043000' => 'ptr', 'Potri.002G043200' => 'ptr', 'Potri.003G123750' => 'ptr', 'Potri.005G055401' => 'ptr', 'Potri.005G219700' => 'ptr', 'Potri.005G220000' => 'ptr', 'Potri.008G161901' => 'ptr', 'Potri.008G162000' => 'ptr', 'Potri.008G162400' => 'ptr', 'Potri.010G076900' => 'ptr', 'Pp3c12_9180' => 'ppa', 'Pp3c13_19770' => 'ppa', 'Pp3c14_22950' => 'ppa', 'Pp3c16_12160' => 'ppa', 'Pp3c27_7820' => 'ppa', 'Pp3c2_3490' => 'ppa', 'Pp3c3_23700' => 'ppa', 'Pp3c3_36520' => 'ppa', 'Pp3c4_15250' => 'ppa', 'PRCOL_00007002' => 'pco', 'Prupe.1G030600' => 'ppe', 'Prupe.1G030700' => 'ppe', 'Prupe.6G345200' => 'ppe', 'Prupe.8G230300' => 'ppe', 'Prupe.8G230500' => 'ppe', 'Psat3g059600' => 'psa', 'Psat5g200920' => 'psa', 'Psat6g056440' => 'psa', 'Psat6g057360' => 'psa', 'Psat6g134120' => 'psa', 'Psat6g134160' => 'psa', 'Psat7g008640' => 'psa', 'Psat7g185240' => 'psa', 'PSO017G1330' => 'pso', 'PSO063G6097' => 'pso', 'PSO170G0835' => 'pso', 'PSO170G2499' => 'pso', 'PSO210G5058' => 'pso', 'PSO210G6154' => 'pso', 'PSO585G0031' => 'pso', 'PSO832G0264' => 'pso', 'PSO832G4288' => 'pso', 'QL03p027355' => 'qlo', 'QL03p027430' => 'qlo', 'QL04p081380' => 'qlo', 'QL06p015642' => 'qlo', 'QL06p015650' => 'qlo', 'QL06p015686' => 'qlo', 'QL12p042927' => 'qlo', 'QL93p1863_0035' => 'qlo', 'RcHm_v2.0_Chr3g0450581' => 'rch', 'RcHm_v2.0_Chr4g0390371' => 'rch', 'RcHm_v2.0_Chr4g0390381' => 'rch', 'RcHm_v2.0_Chr4g0390491' => 'rch', 'RcHm_v2.0_Chr4g0390501' => 'rch', 'RcHm_v2.0_Chr6g0289231' => 'rch', 'Rhsim04G0190400' => 'rsi', 'Rhsim04G0190500' => 'rsi', 'Rhsim04G0190600' => 'rsi', 'Rhsim13G0031400' => 'rsi', 'Rhsim13G0165600' => 'rsi', 'RhsimUnG0114600' => 'rsi', 'RhsimUnG0114700' => 'rsi', 'Sabra02G0034800' => 'sbr', 'Sabra02G0035100' => 'sbr', 'Sabra05G0168600' => 'sbr', 'Sabra05G0168800' => 'sbr', 'Sabra08G0123700' => 'sbr', 'Sabra10G0031900' => 'sbr', 'Sabra13G0039000' => 'sbr', 'SalBow2G0782' => 'sbo', 'SalBow2G1403' => 'sbo', 'SalBow4G0074' => 'sbo', 'SalBow4G2635' => 'sbo', 'SalBow5G3010' => 'sbo', 'Sc05g0000870' => 'sci', 'Sc05g0000890' => 'sci', 'Sc13g0005000' => 'sci', 'Sc13g0005030' => 'sci', 'Sc19g0003790' => 'sci', 'Sc19g0003800' => 'sci', 'Sed0003467' => 'sed', 'Sed0009355' => 'sed', 'Sed0009894' => 'sed', 'Sed0011972' => 'sed', 'Sed0021483' => 'sed', 'Sed0021750' => 'sed', 'Sed0026279' => 'sed', 'SEGI_05312' => 'sgi', 'SEGI_10112' => 'sgi', 'SEGI_15835' => 'sgi', 'SEGI_30386' => 'sgi', 'SEGI_34122' => 'sgi', 'SEGI_35063' => 'sgi', 'SGA_v2.0_scaffold101G29794' => 'sas', 'SGA_v2.0_scaffold1G00573' => 'sas', 'SGA_v2.0_scaffold79G25637' => 'sas', 'SGA_v2.0_scaffold88G27283' => 'sas', 'SGA_v2.0_scaffold88G27285' => 'sas', 'SGA_v2.0_scaffold88G27331' => 'sas', 'SHI09937' => 'shi', 'SMO119G0302' => 'smo', 'SMO137G0231' => 'smo', 'SMO367G1151' => 'smo', 'Solyc02g082000.3' => 'sly', 'Solyc06g031670.3' => 'sly', 'Solyc06g053810.3' => 'sly', 'Solyc07g025457.1' => 'sly', 'Solyc08g059740.1' => 'sly', 'Solyc08g059750.3' => 'sly', 'Solyc09g083370.3' => 'sly', 'Solyc12g038950.3' => 'sly', 'Sopen02g026630' => 'spe', 'Sopen06g018930' => 'spe', 'Sopen06g018940' => 'spe', 'Sopen08g009460' => 'spe', 'Sopen09g032290' => 'spe', 'Sp1g03080' => 'spa', 'Sp1g03090' => 'spa', 'Sp1g05480' => 'spa', 'Sp2g07860' => 'spa', 'Sp2g08430' => 'spa', 'Sp2g08440' => 'spa', 'Sp2g26200' => 'spa', 'Sp4g13170' => 'spa', 'Sp6g33840' => 'spa', 'SpUn1204_0010' => 'spa', 'TAR365G0908' => 'tar', 'TAR381G1270' => 'tar', 'TAR381G1651' => 'tar', 'TAR625G1131' => 'tar', 'TAR633G0962' => 'tar', 'TAR633G1729' => 'tar', 'TAR633G1864' => 'tar', 'TAR636G0221' => 'tar', 'TAR636G0314' => 'tar', 'TAR636G3202' => 'tar', 'THA.LOC104800805' => 'tha', 'THA.LOC104801096' => 'tha', 'THA.LOC104801555' => 'tha', 'THA.LOC104808491' => 'tha', 'THA.LOC104808595' => 'tha', 'THA.LOC104815985' => 'tha', 'THA.LOC104822250' => 'tha', 'THA.LOC104826071' => 'tha', 'Thecc.01G265200' => 'tca', 'Thecc.01G265300' => 'tca', 'Thecc.01G265700' => 'tca', 'Thecc.03G109100' => 'tca', 'Thecc.04G245900' => 'tca', 'Thecc.04G246000' => 'tca', 'Thhalv10003334m.g' => 'esa', 'Thhalv10005508m.g' => 'esa', 'Thhalv10005643m.g' => 'esa', 'Thhalv10007316m.g' => 'esa', 'Thhalv10009006m.g' => 'esa', 'Thhalv10009309m.g' => 'esa', 'Thhalv10014917m.g' => 'esa', 'Thhalv10014919m.g' => 'esa', 'Thhalv10015393m.g' => 'esa', 'Thhalv10016515m.g' => 'esa', 'Thhalv10029242m.g' => 'esa', 'TPR.G16654' => 'tpr', 'TPR.G20589' => 'tpr', 'TPR.G23029' => 'tpr', 'TPR.G27731' => 'tpr', 'TPR.G28889' => 'tpr', 'TPR.G28899' => 'tpr', 'TPR.G30846' => 'tpr', 'TPR.G5452' => 'tpr', 'TPR.G5713' => 'tpr', 'TPR.G9046' => 'tpr', 'TPR.G9061' => 'tpr', 'TWI09G1075' => 'twi', 'TWI12G0806' => 'twi', 'TWI18G0108' => 'twi', 'TWI53G1361' => 'twi', 'TWI73G0185' => 'twi', 'TWI73G0427' => 'twi', 'unitig_37.g12001' => 'ugi', 'unitig_747.g21660' => 'ugi', 'unitig_748.g7232' => 'ugi', 'unitig_748.g7315' => 'ugi', 'unitig_85.g27262' => 'ugi', 'unitig_92.g28220' => 'ugi', 'vmacro02632' => 'vma', 'vmacro08410' => 'vma', 'vmacro08411' => 'vma', 'vmacro15407' => 'vma', 'VMungo0251G3619' => 'vmu', 'VMungo0720G1204' => 'vmu', 'VMungo0720G1918' => 'vmu', 'VMungo0720G2387' => 'vmu', 'VMungo0720G2961' => 'vmu', 'VMungo1215G2154' => 'vmu', 'VMungo1383G2411' => 'vmu', 'Zm00001eb051130' => 'zma', 'Zm00001eb116830' => 'zma', 'Zm00001eb116850' => 'zma', 'Zm00001eb151740' => 'zma', 'Zm00001eb292360' => 'zma', 'Zm00001eb301640' => 'zma' ), 'gf_id' => 'HOM05D000856', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000856' ), 'data_identifier' => 'HOM05D000856', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000856', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p00010' => 'bna', 'A03p04160' => 'bna', 'A03p17160' => 'bna', 'A04p23370' => 'bna', 'A05p14860' => 'bna', 'A08p37020' => 'bna', 'A09p08050' => 'bna', 'A09p66800' => 'bna', 'A09p67940' => 'bna', 'A10p02680' => 'bna', 'A10p05320' => 'bna', 'Aa31LG1G20560' => 'aar', 'Aa31LG1G20610' => 'aar', 'Aa31LG1G7810' => 'aar', 'Aa31LG5G3590' => 'aar', 'Aa31LG5G6140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3819' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4683' => 'aag', 'Actinidia04480' => 'ach', 'Actinidia05466' => 'ach', 'Actinidia08445' => 'ach', 'Actinidia21170' => 'ach', 'Actinidia24812' => 'ach', 'Actinidia24951' => 'ach', 'Actinidia40088' => 'ach', 'Ah.02g111660' => 'amhyb', 'Ah.11g048900' => 'amhyb', 'Ah.11g049910' => 'amhyb', 'AL1G13870' => 'aly', 'AL1G13880' => 'aly', 'AL1G16760' => 'aly', 'AL390U10020' => 'aly', 'AL4G25520' => 'aly', 'AL6G19890' => 'aly', 'AL6G19900' => 'aly', 'AL6G19910' => 'aly', 'AL8G40100' => 'aly', 'Aqoxy2G03562' => 'aox', 'Aqoxy5G00316' => 'aox', 'Aqoxy5G00926' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1628KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1H403S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2FU6SJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.882I6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8YRY2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YN1SN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AF70II' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZA8L1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F916KL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHRD8H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KTZ8QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S22EMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8M29T' => 'arhy', 'AT1G04270' => 'ath', 'AT1G04280' => 'ath', 'AT1G06750' => 'ath', 'AT1G33850' => 'ath', 'AT2G30630' => 'ath', 'AT5G09490' => 'ath', 'AT5G09500' => 'ath', 'AT5G09510' => 'ath', 'AT5G43640' => 'ath', 'AT5G63070' => 'ath', 'ATR0605G315' => 'atr', 'Atru.chr11.175' => 'acertr', 'Atru.chr11.653' => 'acertr', 'Atru.chr3.1616' => 'acertr', 'Atru.chr4.2230' => 'acertr', 'Atru.chr4.2232' => 'acertr', 'Atru.chr5.1598' => 'acertr', 'Atru.chr5.1600' => 'acertr', 'Atru.chr5.2188' => 'acertr', 'AUR62008326' => 'cqu', 'AUR62011922' => 'cqu', 'AUR62011924' => 'cqu', 'AUR62021771' => 'cqu', 'AUR62032237' => 'cqu', 'AUR62032240' => 'cqu', 'BcaB01g05572' => 'bca', 'BcaB02g10337' => 'bca', 'BcaB04g19944' => 'bca', 'BcaB05g21548' => 'bca', 'BcaB05g21549' => 'bca', 'BcaB05g23227' => 'bca', 'BcaB06g26256' => 'bca', 'BcaB06g26257' => 'bca', 'BcaB06g28379' => 'bca', 'BcaC02g11159' => 'bca', 'BcaC03g13258' => 'bca', 'BcaC03g13259' => 'bca', 'BcaC05g24456' => 'bca', 'BcaC05g24457' => 'bca', 'BcaC07g36922' => 'bca', 'BcaC07g36923' => 'bca', 'BcaC07g42050' => 'bca', 'BcaC07g42176' => 'bca', 'BcaC07g42195' => 'bca', 'BcaC07g42196' => 'bca', 'BcaNung06674' => 'bca', 'BolC2t06351H' => 'bol', 'BolC2t06352H' => 'bol', 'BolC3t12993H' => 'bol', 'BolC4t23525H' => 'bol', 'BolC4t27475H' => 'bol', 'BolC5t29025H' => 'bol', 'BolC5t29026H' => 'bol', 'BolC8t46898H' => 'bol', 'BolC8t46899H' => 'bol', 'BolC8t52630H' => 'bol', 'BolC8t52765H' => 'bol', 'BolC9t53824H' => 'bol', 'BraA03t09760Z' => 'bra', 'BraA03t10990Z' => 'bra', 'BraA05t20413Z' => 'bra', 'BraA08t35602Z' => 'bra', 'BraA09t36458Z' => 'bra', 'BraA09t42018Z' => 'bra', 'BraA09t42129Z' => 'bra', 'BraA10t42536Z' => 'bra', 'BraA10t42537Z' => 'bra', 'C01p10690' => 'bna', 'C02p03890' => 'bna', 'C02p03900' => 'bna', 'C03p04620' => 'bna', 'C04p19870' => 'bna', 'C04p59670' => 'bna', 'C05p02460' => 'bna', 'C05p02470' => 'bna', 'C08p00980' => 'bna', 'C08p00990' => 'bna', 'C08p51030' => 'bna', 'C08p52360' => 'bna', 'C09p09120' => 'bna', 'CAN.G19.15' => 'can', 'CAN.G251.10' => 'can', 'CAN.G251.9' => 'can', 'CAN.G398.24' => 'can', 'CAN.G410.32' => 'can', 'CAN.G881.2' => 'can', 'CANSAT01G3025' => 'cansat', 'CANSAT78G1211' => 'cansat', 'CANSAT78G1218' => 'cansat', 'CANSAT78G1521' => 'cansat', 'CANSAT78G1670' => 'cansat', 'CARHR003600' => 'chi', 'CARHR003610' => 'chi', 'CARHR006290' => 'chi', 'CARHR006430' => 'chi', 'CARHR124110' => 'chi', 'CARHR203870' => 'chi', 'CARHR203880' => 'chi', 'CARHR203890' => 'chi', 'CARHR276880' => 'chi', 'Carub.0001s0346' => 'cru', 'Carub.0001s0347' => 'cru', 'Carub.0001s0607' => 'cru', 'Carub.0003s2768' => 'cru', 'Carub.0003s2769' => 'cru', 'Carub.0004s1178' => 'cru', 'Carub.0006s0806' => 'cru', 'Carub.0006s0807' => 'cru', 'Carub.0006s0808' => 'cru', 'Carub.0008s0501' => 'cru', 'Carub.0008s2379' => 'cru', 'Ca_08655_v3' => 'car', 'Ca_08922_v3' => 'car', 'Ca_08923_v3' => 'car', 'Ca_09119_v3' => 'car', 'Ca_09703_v3' => 'car', 'Ca_09705_v3' => 'car', 'Ca_09835_v3' => 'car', 'Ca_26403_v3' => 'car', 'Ca_30719_v3' => 'car', 'CBR_g17958' => 'cbr', 'CBR_g40516' => 'cbr', 'Cc00_g05350' => 'ccan', 'Cc01_g18690' => 'ccan', 'Cc03_g04830' => 'ccan', 'Cc03_g04850' => 'ccan', 'CDE02G4469' => 'cde', 'CDE06G0883' => 'cde', 'CDE06G1295' => 'cde', 'CDE06G1390' => 'cde', 'CDE07G0584' => 'cde', 'CDE07G1084' => 'cde', 'CDE08G1259' => 'cde', 'Cfa002341' => 'cfa', 'Cfa024337' => 'cfa', 'Ciclev10004749m.g' => 'ccl', 'Ciclev10006127m.g' => 'ccl', 'Ciclev10019720m.g' => 'ccl', 'Ciclev10022652m.g' => 'ccl', 'CiPaw.01G190400' => 'cil', 'CiPaw.01G190500' => 'cil', 'CiPaw.02G116400' => 'cil', 'CiPaw.02G116500' => 'cil', 'CiPaw.04G183000' => 'cil', 'CiPaw.04G183300' => 'cil', 'ClCG05G004610' => 'cla', 'ClCG05G004620' => 'cla', 'ClCG06G006730' => 'cla', 'ClCG06G006740' => 'cla', 'ClCG11G003690' => 'cla', 'COL.COLO4_08276' => 'col', 'COL.COLO4_08277' => 'col', 'COL.COLO4_15787' => 'col', 'COL.COLO4_15789' => 'col', 'Cpa.g.c44815' => 'cpa', 'Cpa.g.sc52.144' => 'cpa', 'Cpa.g.sc58.46' => 'cpa', 'Cpa.g.sc58.47' => 'cpa', 'Cre08.g360900' => 'cre', 'CsaV3_2G013030' => 'csa', 'CsaV3_2G013050' => 'csa', 'CsaV3_2G015620' => 'csa', 'CsaV3_3G012590' => 'csa', 'CsaV3_3G012600' => 'csa', 'CSS0001641' => 'camsi', 'CSS0008310' => 'camsi', 'CSS0013011' => 'camsi', 'CSS0017147' => 'camsi', 'CSS0022970' => 'camsi', 'CSS0025655' => 'camsi', 'CSS0028665' => 'camsi', 'CSS0029117' => 'camsi', 'CSS0032024' => 'camsi', 'CSS0039681' => 'camsi', 'CSS0046516' => 'camsi', 'CSS0050307' => 'camsi', 'DCAR_005871' => 'dca', 'DCAR_007342' => 'dca', 'DCAR_024228' => 'dca', 'DCAR_027277' => 'dca', 'DCAR_030718' => 'dca', 'Dinv20287' => 'din', 'Dinv22461' => 'din', 'Dinv22464' => 'din', 'Dinv29912' => 'din', 'Dinv29913' => 'din', 'Dinv34580' => 'din', 'Dinv34582' => 'din', 'Dinv44632' => 'din', 'Duzib052G0266' => 'dzi', 'Duzib133G0907' => 'dzi', 'Duzib133G1034' => 'dzi', 'Duzib138G0207' => 'dzi', 'Duzib138G0491' => 'dzi', 'Duzib151G0812' => 'dzi', 'Duzib151G1166' => 'dzi', 'Duzib168G0192' => 'dzi', 'Duzib211G0077' => 'dzi', 'Duzib212G0429' => 'dzi', 'Duzib212G0472' => 'dzi', 'ECA233G2617' => 'eca', 'ECA236G4188' => 'eca', 'ECA240G0936' => 'eca', 'ECA240G1129' => 'eca', 'ECA247G0623' => 'eca', 'EL10Ac5g10451' => 'bvu', 'EL10Ac5g10453' => 'bvu', 'EL10Ac5g10894' => 'bvu', 'Eucgr.H00192' => 'egr', 'Eucgr.H00193' => 'egr', 'Eucgr.H00194' => 'egr', 'Eucgr.J01562' => 'egr', 'Eucgr.K03301' => 'egr', 'FAN02G0632' => 'fan', 'FAN05G5378' => 'fan', 'FAN09G3247' => 'fan', 'FAN12G0435' => 'fan', 'FAN12G2426' => 'fan', 'FAN14G1707' => 'fan', 'FAN14G4725' => 'fan', 'FAN15G2071' => 'fan', 'FAN17G3065' => 'fan', 'FAN19G1376' => 'fan', 'FAN20G0354' => 'fan', 'FAN20G2429' => 'fan', 'FAN20G2658' => 'fan', 'FAN24G2343' => 'fan', 'FAN27G2362' => 'fan', 'FAN28G1765' => 'fan', 'FvH4_1g16020' => 'fve', 'FvH4_2g04890' => 'fve', 'FvH4_2g22270' => 'fve', 'FvH4_4g02630' => 'fve', 'FvH4_4g02640' => 'fve', 'FvH4_6g02650' => 'fve', 'Glyma.02G140600' => 'gma', 'Glyma.03G159900' => 'gma', 'Glyma.05G234800' => 'gma', 'Glyma.07G269600' => 'gma', 'Glyma.08G042300' => 'gma', 'Glyma.10G033500' => 'gma', 'Glyma.10G185200' => 'gma', 'Glyma.17G004300' => 'gma', 'Glyma.19G161900' => 'gma', 'Glyma.20G205100' => 'gma', 'Glyma.20G205200' => 'gma', 'Gohir.A01G139101' => 'ghi', 'Gohir.A02G035600' => 'ghi', 'Gohir.A02G117901' => 'ghi', 'Gohir.A07G210100' => 'ghi', 'Gohir.A07G210200' => 'ghi', 'Gohir.A08G061100' => 'ghi', 'Gohir.A09G223000' => 'ghi', 'Gohir.A09G223100' => 'ghi', 'Gohir.A10G113900' => 'ghi', 'Gohir.A10G114000' => 'ghi', 'Gohir.D02G042300' => 'ghi', 'Gohir.D07G216100' => 'ghi', 'Gohir.D07G216200' => 'ghi', 'Gohir.D08G070400' => 'ghi', 'Gohir.D09G225000' => 'ghi', 'Gohir.D09G225100' => 'ghi', 'Gohir.D10G152300' => 'ghi', 'Gohir.D10G153200' => 'ghi', 'Gohir.D11G133701' => 'ghi', 'Gorai.004G074100' => 'gra', 'Gorai.005G046800' => 'gra', 'Gorai.006G246500' => 'gra', 'Gorai.006G246600' => 'gra', 'Gorai.007G142900' => 'gra', 'Gorai.011G171000' => 'gra', 'Gorai.011G171100' => 'gra', 'Gorai.013G104300' => 'gra', 'Gorai.013G104400' => 'gra', 'GSVIVG01000754001' => 'vvi', 'GSVIVG01000756001' => 'vvi', 'GSVIVG01010903001' => 'vvi', 'GSVIVG01017623001' => 'vvi', 'GSVIVG01018113001' => 'vvi', 'GSVIVG01018116001' => 'vvi', 'GSVIVG01018118001' => 'vvi', 'HanXRQChr03g0076211' => 'han', 'HanXRQChr03g0092431' => 'han', 'HanXRQChr03g0092441' => 'han', 'HanXRQChr03g0092591' => 'han', 'HanXRQChr03g0092671' => 'han', 'HanXRQChr03g0092681' => 'han', 'HanXRQChr03g0092691' => 'han', 'HanXRQChr03g0092701' => 'han', 'HanXRQChr03g0092721' => 'han', 'HanXRQChr03g0092731' => 'han', 'HanXRQChr04g0113681' => 'han', 'HanXRQChr10g0281371' => 'han', 'HanXRQChr11g0337141' => 'han', 'HanXRQChr13g0424521' => 'han', 'HanXRQChr13g0424531' => 'han', 'HanXRQChr13g0424541' => 'han', 'HanXRQChr16g0498221' => 'han', 'Haze_04377' => 'cav', 'Haze_11298' => 'cav', 'Haze_24547' => 'cav', 'Haze_24550' => 'cav', 'Haze_26587' => 'cav', 'Hma1.2p1_0650F.1_g195410' => 'hma', 'Hma1.2p1_0893F.1_g233470' => 'hma', 'HPP92_006508' => 'vpl', 'HPP92_024780' => 'vpl', 'Hund02688' => 'sun', 'Hund09380' => 'sun', 'Hund09381' => 'sun', 'Hund09832' => 'sun', 'Hund09833' => 'sun', 'Hund11351' => 'sun', 'Hund11513' => 'sun', 'Lalb_Chr06g0162591' => 'lal', 'Lalb_Chr06g0162601' => 'lal', 'Lalb_Chr06g0169321' => 'lal', 'Lalb_Chr09g0330951' => 'lal', 'Lalb_Chr16g0387631' => 'lal', 'Lalb_Chr21g0306241' => 'lal', 'Lalb_Chr25g0290051' => 'lal', 'Lalb_Chr25g0290061' => 'lal', 'Lalb_Chr25g0290071' => 'lal', 'Lj1g0003876' => 'lja', 'Lj1P1207T36' => 'lonja', 'Lj2C1156G12' => 'lonja', 'Lj3A793G39' => 'lonja', 'Lj3C580G2' => 'lonja', 'Lj3C780G2' => 'lonja', 'Lj3C780T4' => 'lonja', 'Lj3C793G9' => 'lonja', 'Lj4g0012960' => 'lja', 'Lj5g0021252' => 'lja', 'Lj5g0021484' => 'lja', 'Lj5g0024528' => 'lja', 'Lj6A399T12' => 'lonja', 'Lj6A656G65' => 'lonja', 'Lsat_1_v5_gn_3_125500' => 'lsa', 'Lsat_1_v5_gn_3_125540' => 'lsa', 'Lsat_1_v5_gn_5_72701' => 'lsa', 'Lsat_1_v5_gn_8_91560' => 'lsa', 'Lsat_1_v5_gn_9_9640' => 'lsa', 'Manes.01G200600' => 'mes', 'Manes.01G200700' => 'mes', 'Manes.03G168900' => 'mes', 'Manes.03G169000' => 'mes', 'Manes.05G085801' => 'mes', 'Manes.05G086200' => 'mes', 'Manes.15G036700' => 'mes', 'Manes.15G036900' => 'mes', 'Mapoly0004s0172' => 'mpo', 'Mapoly0023s0001' => 'mpo', 'Mapoly0142s0012' => 'mpo', 'MBI01_g32854_MAGBIO' => 'mbi', 'MBI11_g24427_MAGBIO' => 'mbi', 'MBI11_g47319_MAGBIO' => 'mbi', 'MCO01G433' => 'mco', 'MD00G1187800' => 'mdo', 'MD04G1226500' => 'mdo', 'MD05G1203900' => 'mdo', 'MD10G1191100' => 'mdo', 'MD12G1243500' => 'mdo', 'MD13G1207000' => 'mdo', 'MD13G1207100' => 'mdo', 'MD16G1208600' => 'mdo', 'Medtr1g050352' => 'mtr', 'Medtr1g070385' => 'mtr', 'Medtr1g070450' => 'mtr', 'Medtr1g075200' => 'mtr', 'Medtr1g075250' => 'mtr', 'Medtr1g075260' => 'mtr', 'Medtr1g475250' => 'mtr', 'Medtr4g075450' => 'mtr', 'Medtr7g096300' => 'mtr', 'Medtr8g105110' => 'mtr', 'MELO3C006470.2' => 'cme', 'MELO3C006471.2' => 'cme', 'MELO3C020772.2' => 'cme', 'MELO3C026780.2' => 'cme', 'MELO3C026781.2' => 'cme', 'Migut.D00390' => 'egut', 'Migut.G00435' => 'egut', 'Migut.G00436' => 'egut', 'Migut.G00718' => 'egut', 'MSTRG.21891' => 'ama', 'MSTRG.26910' => 'ama', 'MSTRG.4099' => 'ama', 'MSTRG.9925' => 'ama', 'Nitab4.5_0000165g0010' => 'nta', 'Nitab4.5_0000209g0180' => 'nta', 'Nitab4.5_0000244g0440' => 'nta', 'Nitab4.5_0000525g0220' => 'nta', 'Nitab4.5_0001597g0020' => 'nta', 'Nitab4.5_0001878g0040' => 'nta', 'Nitab4.5_0001878g0060' => 'nta', 'Nitab4.5_0002838g0100' => 'nta', 'Nitab4.5_0002838g0120' => 'nta', 'Nitab4.5_0004798g0030' => 'nta', 'Nitab4.5_0005420g0010' => 'nta', 'Nitab4.5_0005507g0010' => 'nta', 'Nitab4.5_0005574g0020' => 'nta', 'Nitab4.5_0005838g0010' => 'nta', 'Nitab4.5_0010580g0020' => 'nta', 'Nn1g02599' => 'nnu', 'Nn1g02608' => 'nnu', 'Nn3g17742' => 'nnu', 'Nn3g19534' => 'nnu', 'Nn3g19535' => 'nnu', 'Oeu008790.1' => 'oeu', 'Oeu008792.1' => 'oeu', 'Oeu032590.1' => 'oeu', 'Oeu035349.1' => 'oeu', 'Oeu049791.1' => 'oeu', 'Os01g0774500' => 'osa', 'Os03g0628800' => 'osa', 'Os03g0798600' => 'osa', 'Os05g0508800' => 'osa', 'Peaxi162Scf00036g02018' => 'pax', 'Peaxi162Scf00578g00032' => 'pax', 'Peaxi162Scf00578g00317' => 'pax', 'Peaxi162Scf00785g00114' => 'pax', 'Peaxi162Scf00813g00119' => 'pax', 'Peaxi162Scf00906g00227' => 'pax', 'PGR004G0875' => 'pgr', 'PGR004G2424' => 'pgr', 'PGR031G1239' => 'pgr', 'PGR031G2474' => 'pgr', 'PGR044G0423' => 'pgr', 'PGSC0003DMG400001128' => 'stu', 'PGSC0003DMG400007336' => 'stu', 'PGSC0003DMG400016318' => 'stu', 'PGSC0003DMG400016319' => 'stu', 'PGSC0003DMG400018074' => 'stu', 'Phvul.001G157700' => 'pvu', 'Phvul.002G148550' => 'pvu', 'Phvul.002G320200' => 'pvu', 'Phvul.003G089200' => 'pvu', 'Phvul.007G126000' => 'pvu', 'Phvul.007G126100' => 'pvu', 'Phvul.007G178000' => 'pvu', 'Phvul.007G178200' => 'pvu', 'Potri.002G043000' => 'ptr', 'Potri.002G043200' => 'ptr', 'Potri.003G123750' => 'ptr', 'Potri.005G055401' => 'ptr', 'Potri.005G219700' => 'ptr', 'Potri.005G220000' => 'ptr', 'Potri.008G161901' => 'ptr', 'Potri.008G162000' => 'ptr', 'Potri.008G162400' => 'ptr', 'Potri.010G076900' => 'ptr', 'Pp3c12_9180' => 'ppa', 'Pp3c13_19770' => 'ppa', 'Pp3c14_22950' => 'ppa', 'Pp3c16_12160' => 'ppa', 'Pp3c27_7820' => 'ppa', 'Pp3c2_3490' => 'ppa', 'Pp3c3_23700' => 'ppa', 'Pp3c3_36520' => 'ppa', 'Pp3c4_15250' => 'ppa', 'PRCOL_00007002' => 'pco', 'Prupe.1G030600' => 'ppe', 'Prupe.1G030700' => 'ppe', 'Prupe.6G345200' => 'ppe', 'Prupe.8G230300' => 'ppe', 'Prupe.8G230500' => 'ppe', 'Psat3g059600' => 'psa', 'Psat5g200920' => 'psa', 'Psat6g056440' => 'psa', 'Psat6g057360' => 'psa', 'Psat6g134120' => 'psa', 'Psat6g134160' => 'psa', 'Psat7g008640' => 'psa', 'Psat7g185240' => 'psa', 'PSO017G1330' => 'pso', 'PSO063G6097' => 'pso', 'PSO170G0835' => 'pso', 'PSO170G2499' => 'pso', 'PSO210G5058' => 'pso', 'PSO210G6154' => 'pso', 'PSO585G0031' => 'pso', 'PSO832G0264' => 'pso', 'PSO832G4288' => 'pso', 'QL03p027355' => 'qlo', 'QL03p027430' => 'qlo', 'QL04p081380' => 'qlo', 'QL06p015642' => 'qlo', 'QL06p015650' => 'qlo', 'QL06p015686' => 'qlo', 'QL12p042927' => 'qlo', 'QL93p1863_0035' => 'qlo', 'RcHm_v2.0_Chr3g0450581' => 'rch', 'RcHm_v2.0_Chr4g0390371' => 'rch', 'RcHm_v2.0_Chr4g0390381' => 'rch', 'RcHm_v2.0_Chr4g0390491' => 'rch', 'RcHm_v2.0_Chr4g0390501' => 'rch', 'RcHm_v2.0_Chr6g0289231' => 'rch', 'Rhsim04G0190400' => 'rsi', 'Rhsim04G0190500' => 'rsi', 'Rhsim04G0190600' => 'rsi', 'Rhsim13G0031400' => 'rsi', 'Rhsim13G0165600' => 'rsi', 'RhsimUnG0114600' => 'rsi', 'RhsimUnG0114700' => 'rsi', 'Sabra02G0034800' => 'sbr', 'Sabra02G0035100' => 'sbr', 'Sabra05G0168600' => 'sbr', 'Sabra05G0168800' => 'sbr', 'Sabra08G0123700' => 'sbr', 'Sabra10G0031900' => 'sbr', 'Sabra13G0039000' => 'sbr', 'SalBow2G0782' => 'sbo', 'SalBow2G1403' => 'sbo', 'SalBow4G0074' => 'sbo', 'SalBow4G2635' => 'sbo', 'SalBow5G3010' => 'sbo', 'Sc05g0000870' => 'sci', 'Sc05g0000890' => 'sci', 'Sc13g0005000' => 'sci', 'Sc13g0005030' => 'sci', 'Sc19g0003790' => 'sci', 'Sc19g0003800' => 'sci', 'Sed0003467' => 'sed', 'Sed0009355' => 'sed', 'Sed0009894' => 'sed', 'Sed0011972' => 'sed', 'Sed0021483' => 'sed', 'Sed0021750' => 'sed', 'Sed0026279' => 'sed', 'SEGI_05312' => 'sgi', 'SEGI_10112' => 'sgi', 'SEGI_15835' => 'sgi', 'SEGI_30386' => 'sgi', 'SEGI_34122' => 'sgi', 'SEGI_35063' => 'sgi', 'SGA_v2.0_scaffold101G29794' => 'sas', 'SGA_v2.0_scaffold1G00573' => 'sas', 'SGA_v2.0_scaffold79G25637' => 'sas', 'SGA_v2.0_scaffold88G27283' => 'sas', 'SGA_v2.0_scaffold88G27285' => 'sas', 'SGA_v2.0_scaffold88G27331' => 'sas', 'SHI09937' => 'shi', 'SMO119G0302' => 'smo', 'SMO137G0231' => 'smo', 'SMO367G1151' => 'smo', 'Solyc02g082000.3' => 'sly', 'Solyc06g031670.3' => 'sly', 'Solyc06g053810.3' => 'sly', 'Solyc07g025457.1' => 'sly', 'Solyc08g059740.1' => 'sly', 'Solyc08g059750.3' => 'sly', 'Solyc09g083370.3' => 'sly', 'Solyc12g038950.3' => 'sly', 'Sopen02g026630' => 'spe', 'Sopen06g018930' => 'spe', 'Sopen06g018940' => 'spe', 'Sopen08g009460' => 'spe', 'Sopen09g032290' => 'spe', 'Sp1g03080' => 'spa', 'Sp1g03090' => 'spa', 'Sp1g05480' => 'spa', 'Sp2g07860' => 'spa', 'Sp2g08430' => 'spa', 'Sp2g08440' => 'spa', 'Sp2g26200' => 'spa', 'Sp4g13170' => 'spa', 'Sp6g33840' => 'spa', 'SpUn1204_0010' => 'spa', 'TAR365G0908' => 'tar', 'TAR381G1270' => 'tar', 'TAR381G1651' => 'tar', 'TAR625G1131' => 'tar', 'TAR633G0962' => 'tar', 'TAR633G1729' => 'tar', 'TAR633G1864' => 'tar', 'TAR636G0221' => 'tar', 'TAR636G0314' => 'tar', 'TAR636G3202' => 'tar', 'THA.LOC104800805' => 'tha', 'THA.LOC104801096' => 'tha', 'THA.LOC104801555' => 'tha', 'THA.LOC104808491' => 'tha', 'THA.LOC104808595' => 'tha', 'THA.LOC104815985' => 'tha', 'THA.LOC104822250' => 'tha', 'THA.LOC104826071' => 'tha', 'Thecc.01G265200' => 'tca', 'Thecc.01G265300' => 'tca', 'Thecc.01G265700' => 'tca', 'Thecc.03G109100' => 'tca', 'Thecc.04G245900' => 'tca', 'Thecc.04G246000' => 'tca', 'Thhalv10003334m.g' => 'esa', 'Thhalv10005508m.g' => 'esa', 'Thhalv10005643m.g' => 'esa', 'Thhalv10007316m.g' => 'esa', 'Thhalv10009006m.g' => 'esa', 'Thhalv10009309m.g' => 'esa', 'Thhalv10014917m.g' => 'esa', 'Thhalv10014919m.g' => 'esa', 'Thhalv10015393m.g' => 'esa', 'Thhalv10016515m.g' => 'esa', 'Thhalv10029242m.g' => 'esa', 'TPR.G16654' => 'tpr', 'TPR.G20589' => 'tpr', 'TPR.G23029' => 'tpr', 'TPR.G27731' => 'tpr', 'TPR.G28889' => 'tpr', 'TPR.G28899' => 'tpr', 'TPR.G30846' => 'tpr', 'TPR.G5452' => 'tpr', 'TPR.G5713' => 'tpr', 'TPR.G9046' => 'tpr', 'TPR.G9061' => 'tpr', 'TWI09G1075' => 'twi', 'TWI12G0806' => 'twi', 'TWI18G0108' => 'twi', 'TWI53G1361' => 'twi', 'TWI73G0185' => 'twi', 'TWI73G0427' => 'twi', 'unitig_37.g12001' => 'ugi', 'unitig_747.g21660' => 'ugi', 'unitig_748.g7232' => 'ugi', 'unitig_748.g7315' => 'ugi', 'unitig_85.g27262' => 'ugi', 'unitig_92.g28220' => 'ugi', 'vmacro02632' => 'vma', 'vmacro08410' => 'vma', 'vmacro08411' => 'vma', 'vmacro15407' => 'vma', 'VMungo0251G3619' => 'vmu', 'VMungo0720G1204' => 'vmu', 'VMungo0720G1918' => 'vmu', 'VMungo0720G2387' => 'vmu', 'VMungo0720G2961' => 'vmu', 'VMungo1215G2154' => 'vmu', 'VMungo1383G2411' => 'vmu', 'Zm00001eb051130' => 'zma', 'Zm00001eb116830' => 'zma', 'Zm00001eb116850' => 'zma', 'Zm00001eb151740' => 'zma', 'Zm00001eb292360' => 'zma', 'Zm00001eb301640' => 'zma' ) $gf_id = 'HOM05D000856' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000856' ) $data_identifier = 'HOM05D000856' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 13, 'ath' => (int) 10, 'atr' => (int) 1, 'acertr' => (int) 8, 'cqu' => (int) 6, 'bca' => (int) 21, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 11, 'car' => (int) 9, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 8, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 5, 'fan' => (int) 16, 'fve' => (int) 6, 'gma' => (int) 11, 'ghi' => (int) 19, 'gra' => (int) 9, 'vvi' => (int) 7, 'han' => (int) 17, 'cav' => (int) 5, 'hma' => (int) 2, 'vpl' => (int) 2, 'sun' => (int) 7, 'lal' => (int) 9, 'lja' => (int) 5, 'lonja' => (int) 9, 'lsa' => (int) 5, 'mes' => (int) 8, 'mpo' => (int) 3, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 10, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 15, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 9, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 9, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 6, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 5, 'spa' => (int) 10, 'tar' => (int) 10, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 11, 'tpr' => (int) 11, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 4, 'vmu' => (int) 7, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb301640' $species_info = array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ) $local_species = 'mpo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000856', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p00010' => 'bna', 'A03p04160' => 'bna', 'A03p17160' => 'bna', 'A04p23370' => 'bna', 'A05p14860' => 'bna', 'A08p37020' => 'bna', 'A09p08050' => 'bna', 'A09p66800' => 'bna', 'A09p67940' => 'bna', 'A10p02680' => 'bna', 'A10p05320' => 'bna', 'Aa31LG1G20560' => 'aar', 'Aa31LG1G20610' => 'aar', 'Aa31LG1G7810' => 'aar', 'Aa31LG5G3590' => 'aar', 'Aa31LG5G6140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3819' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4683' => 'aag', 'Actinidia04480' => 'ach', 'Actinidia05466' => 'ach', 'Actinidia08445' => 'ach', 'Actinidia21170' => 'ach', 'Actinidia24812' => 'ach', 'Actinidia24951' => 'ach', 'Actinidia40088' => 'ach', 'Ah.02g111660' => 'amhyb', 'Ah.11g048900' => 'amhyb', 'Ah.11g049910' => 'amhyb', 'AL1G13870' => 'aly', 'AL1G13880' => 'aly', 'AL1G16760' => 'aly', 'AL390U10020' => 'aly', 'AL4G25520' => 'aly', 'AL6G19890' => 'aly', 'AL6G19900' => 'aly', 'AL6G19910' => 'aly', 'AL8G40100' => 'aly', 'Aqoxy2G03562' => 'aox', 'Aqoxy5G00316' => 'aox', 'Aqoxy5G00926' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1628KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1H403S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2FU6SJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.882I6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8YRY2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YN1SN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AF70II' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZA8L1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F916KL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHRD8H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KTZ8QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S22EMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8M29T' => 'arhy', 'AT1G04270' => 'ath', 'AT1G04280' => 'ath', 'AT1G06750' => 'ath', 'AT1G33850' => 'ath', 'AT2G30630' => 'ath', 'AT5G09490' => 'ath', 'AT5G09500' => 'ath', 'AT5G09510' => 'ath', 'AT5G43640' => 'ath', 'AT5G63070' => 'ath', 'ATR0605G315' => 'atr', 'Atru.chr11.175' => 'acertr', 'Atru.chr11.653' => 'acertr', 'Atru.chr3.1616' => 'acertr', 'Atru.chr4.2230' => 'acertr', 'Atru.chr4.2232' => 'acertr', 'Atru.chr5.1598' => 'acertr', 'Atru.chr5.1600' => 'acertr', 'Atru.chr5.2188' => 'acertr', 'AUR62008326' => 'cqu', 'AUR62011922' => 'cqu', 'AUR62011924' => 'cqu', 'AUR62021771' => 'cqu', 'AUR62032237' => 'cqu', 'AUR62032240' => 'cqu', 'BcaB01g05572' => 'bca', 'BcaB02g10337' => 'bca', 'BcaB04g19944' => 'bca', 'BcaB05g21548' => 'bca', 'BcaB05g21549' => 'bca', 'BcaB05g23227' => 'bca', 'BcaB06g26256' => 'bca', 'BcaB06g26257' => 'bca', 'BcaB06g28379' => 'bca', 'BcaC02g11159' => 'bca', 'BcaC03g13258' => 'bca', 'BcaC03g13259' => 'bca', 'BcaC05g24456' => 'bca', 'BcaC05g24457' => 'bca', 'BcaC07g36922' => 'bca', 'BcaC07g36923' => 'bca', 'BcaC07g42050' => 'bca', 'BcaC07g42176' => 'bca', 'BcaC07g42195' => 'bca', 'BcaC07g42196' => 'bca', 'BcaNung06674' => 'bca', 'BolC2t06351H' => 'bol', 'BolC2t06352H' => 'bol', 'BolC3t12993H' => 'bol', 'BolC4t23525H' => 'bol', 'BolC4t27475H' => 'bol', 'BolC5t29025H' => 'bol', 'BolC5t29026H' => 'bol', 'BolC8t46898H' => 'bol', 'BolC8t46899H' => 'bol', 'BolC8t52630H' => 'bol', 'BolC8t52765H' => 'bol', 'BolC9t53824H' => 'bol', 'BraA03t09760Z' => 'bra', 'BraA03t10990Z' => 'bra', 'BraA05t20413Z' => 'bra', 'BraA08t35602Z' => 'bra', 'BraA09t36458Z' => 'bra', 'BraA09t42018Z' => 'bra', 'BraA09t42129Z' => 'bra', 'BraA10t42536Z' => 'bra', 'BraA10t42537Z' => 'bra', 'C01p10690' => 'bna', 'C02p03890' => 'bna', 'C02p03900' => 'bna', 'C03p04620' => 'bna', 'C04p19870' => 'bna', 'C04p59670' => 'bna', 'C05p02460' => 'bna', 'C05p02470' => 'bna', 'C08p00980' => 'bna', 'C08p00990' => 'bna', 'C08p51030' => 'bna', 'C08p52360' => 'bna', 'C09p09120' => 'bna', 'CAN.G19.15' => 'can', 'CAN.G251.10' => 'can', 'CAN.G251.9' => 'can', 'CAN.G398.24' => 'can', 'CAN.G410.32' => 'can', 'CAN.G881.2' => 'can', 'CANSAT01G3025' => 'cansat', 'CANSAT78G1211' => 'cansat', 'CANSAT78G1218' => 'cansat', 'CANSAT78G1521' => 'cansat', 'CANSAT78G1670' => 'cansat', 'CARHR003600' => 'chi', 'CARHR003610' => 'chi', 'CARHR006290' => 'chi', 'CARHR006430' => 'chi', 'CARHR124110' => 'chi', 'CARHR203870' => 'chi', 'CARHR203880' => 'chi', 'CARHR203890' => 'chi', 'CARHR276880' => 'chi', 'Carub.0001s0346' => 'cru', 'Carub.0001s0347' => 'cru', 'Carub.0001s0607' => 'cru', 'Carub.0003s2768' => 'cru', 'Carub.0003s2769' => 'cru', 'Carub.0004s1178' => 'cru', 'Carub.0006s0806' => 'cru', 'Carub.0006s0807' => 'cru', 'Carub.0006s0808' => 'cru', 'Carub.0008s0501' => 'cru', 'Carub.0008s2379' => 'cru', 'Ca_08655_v3' => 'car', 'Ca_08922_v3' => 'car', 'Ca_08923_v3' => 'car', 'Ca_09119_v3' => 'car', 'Ca_09703_v3' => 'car', 'Ca_09705_v3' => 'car', 'Ca_09835_v3' => 'car', 'Ca_26403_v3' => 'car', 'Ca_30719_v3' => 'car', 'CBR_g17958' => 'cbr', 'CBR_g40516' => 'cbr', 'Cc00_g05350' => 'ccan', 'Cc01_g18690' => 'ccan', 'Cc03_g04830' => 'ccan', 'Cc03_g04850' => 'ccan', 'CDE02G4469' => 'cde', 'CDE06G0883' => 'cde', 'CDE06G1295' => 'cde', 'CDE06G1390' => 'cde', 'CDE07G0584' => 'cde', 'CDE07G1084' => 'cde', 'CDE08G1259' => 'cde', 'Cfa002341' => 'cfa', 'Cfa024337' => 'cfa', 'Ciclev10004749m.g' => 'ccl', 'Ciclev10006127m.g' => 'ccl', 'Ciclev10019720m.g' => 'ccl', 'Ciclev10022652m.g' => 'ccl', 'CiPaw.01G190400' => 'cil', 'CiPaw.01G190500' => 'cil', 'CiPaw.02G116400' => 'cil', 'CiPaw.02G116500' => 'cil', 'CiPaw.04G183000' => 'cil', 'CiPaw.04G183300' => 'cil', 'ClCG05G004610' => 'cla', 'ClCG05G004620' => 'cla', 'ClCG06G006730' => 'cla', 'ClCG06G006740' => 'cla', 'ClCG11G003690' => 'cla', 'COL.COLO4_08276' => 'col', 'COL.COLO4_08277' => 'col', 'COL.COLO4_15787' => 'col', 'COL.COLO4_15789' => 'col', 'Cpa.g.c44815' => 'cpa', 'Cpa.g.sc52.144' => 'cpa', 'Cpa.g.sc58.46' => 'cpa', 'Cpa.g.sc58.47' => 'cpa', 'Cre08.g360900' => 'cre', 'CsaV3_2G013030' => 'csa', 'CsaV3_2G013050' => 'csa', 'CsaV3_2G015620' => 'csa', 'CsaV3_3G012590' => 'csa', 'CsaV3_3G012600' => 'csa', 'CSS0001641' => 'camsi', 'CSS0008310' => 'camsi', 'CSS0013011' => 'camsi', 'CSS0017147' => 'camsi', 'CSS0022970' => 'camsi', 'CSS0025655' => 'camsi', 'CSS0028665' => 'camsi', 'CSS0029117' => 'camsi', 'CSS0032024' => 'camsi', 'CSS0039681' => 'camsi', 'CSS0046516' => 'camsi', 'CSS0050307' => 'camsi', 'DCAR_005871' => 'dca', 'DCAR_007342' => 'dca', 'DCAR_024228' => 'dca', 'DCAR_027277' => 'dca', 'DCAR_030718' => 'dca', 'Dinv20287' => 'din', 'Dinv22461' => 'din', 'Dinv22464' => 'din', 'Dinv29912' => 'din', 'Dinv29913' => 'din', 'Dinv34580' => 'din', 'Dinv34582' => 'din', 'Dinv44632' => 'din', 'Duzib052G0266' => 'dzi', 'Duzib133G0907' => 'dzi', 'Duzib133G1034' => 'dzi', 'Duzib138G0207' => 'dzi', 'Duzib138G0491' => 'dzi', 'Duzib151G0812' => 'dzi', 'Duzib151G1166' => 'dzi', 'Duzib168G0192' => 'dzi', 'Duzib211G0077' => 'dzi', 'Duzib212G0429' => 'dzi', 'Duzib212G0472' => 'dzi', 'ECA233G2617' => 'eca', 'ECA236G4188' => 'eca', 'ECA240G0936' => 'eca', 'ECA240G1129' => 'eca', 'ECA247G0623' => 'eca', 'EL10Ac5g10451' => 'bvu', 'EL10Ac5g10453' => 'bvu', 'EL10Ac5g10894' => 'bvu', 'Eucgr.H00192' => 'egr', 'Eucgr.H00193' => 'egr', 'Eucgr.H00194' => 'egr', 'Eucgr.J01562' => 'egr', 'Eucgr.K03301' => 'egr', 'FAN02G0632' => 'fan', 'FAN05G5378' => 'fan', 'FAN09G3247' => 'fan', 'FAN12G0435' => 'fan', 'FAN12G2426' => 'fan', 'FAN14G1707' => 'fan', 'FAN14G4725' => 'fan', 'FAN15G2071' => 'fan', 'FAN17G3065' => 'fan', 'FAN19G1376' => 'fan', 'FAN20G0354' => 'fan', 'FAN20G2429' => 'fan', 'FAN20G2658' => 'fan', 'FAN24G2343' => 'fan', 'FAN27G2362' => 'fan', 'FAN28G1765' => 'fan', 'FvH4_1g16020' => 'fve', 'FvH4_2g04890' => 'fve', 'FvH4_2g22270' => 'fve', 'FvH4_4g02630' => 'fve', 'FvH4_4g02640' => 'fve', 'FvH4_6g02650' => 'fve', 'Glyma.02G140600' => 'gma', 'Glyma.03G159900' => 'gma', 'Glyma.05G234800' => 'gma', 'Glyma.07G269600' => 'gma', 'Glyma.08G042300' => 'gma', 'Glyma.10G033500' => 'gma', 'Glyma.10G185200' => 'gma', 'Glyma.17G004300' => 'gma', 'Glyma.19G161900' => 'gma', 'Glyma.20G205100' => 'gma', 'Glyma.20G205200' => 'gma', 'Gohir.A01G139101' => 'ghi', 'Gohir.A02G035600' => 'ghi', 'Gohir.A02G117901' => 'ghi', 'Gohir.A07G210100' => 'ghi', 'Gohir.A07G210200' => 'ghi', 'Gohir.A08G061100' => 'ghi', 'Gohir.A09G223000' => 'ghi', 'Gohir.A09G223100' => 'ghi', 'Gohir.A10G113900' => 'ghi', 'Gohir.A10G114000' => 'ghi', 'Gohir.D02G042300' => 'ghi', 'Gohir.D07G216100' => 'ghi', 'Gohir.D07G216200' => 'ghi', 'Gohir.D08G070400' => 'ghi', 'Gohir.D09G225000' => 'ghi', 'Gohir.D09G225100' => 'ghi', 'Gohir.D10G152300' => 'ghi', 'Gohir.D10G153200' => 'ghi', 'Gohir.D11G133701' => 'ghi', 'Gorai.004G074100' => 'gra', 'Gorai.005G046800' => 'gra', 'Gorai.006G246500' => 'gra', 'Gorai.006G246600' => 'gra', 'Gorai.007G142900' => 'gra', 'Gorai.011G171000' => 'gra', 'Gorai.011G171100' => 'gra', 'Gorai.013G104300' => 'gra', 'Gorai.013G104400' => 'gra', 'GSVIVG01000754001' => 'vvi', 'GSVIVG01000756001' => 'vvi', 'GSVIVG01010903001' => 'vvi', 'GSVIVG01017623001' => 'vvi', 'GSVIVG01018113001' => 'vvi', 'GSVIVG01018116001' => 'vvi', 'GSVIVG01018118001' => 'vvi', 'HanXRQChr03g0076211' => 'han', 'HanXRQChr03g0092431' => 'han', 'HanXRQChr03g0092441' => 'han', 'HanXRQChr03g0092591' => 'han', 'HanXRQChr03g0092671' => 'han', 'HanXRQChr03g0092681' => 'han', 'HanXRQChr03g0092691' => 'han', 'HanXRQChr03g0092701' => 'han', 'HanXRQChr03g0092721' => 'han', 'HanXRQChr03g0092731' => 'han', 'HanXRQChr04g0113681' => 'han', 'HanXRQChr10g0281371' => 'han', 'HanXRQChr11g0337141' => 'han', 'HanXRQChr13g0424521' => 'han', 'HanXRQChr13g0424531' => 'han', 'HanXRQChr13g0424541' => 'han', 'HanXRQChr16g0498221' => 'han', 'Haze_04377' => 'cav', 'Haze_11298' => 'cav', 'Haze_24547' => 'cav', 'Haze_24550' => 'cav', 'Haze_26587' => 'cav', 'Hma1.2p1_0650F.1_g195410' => 'hma', 'Hma1.2p1_0893F.1_g233470' => 'hma', 'HPP92_006508' => 'vpl', 'HPP92_024780' => 'vpl', 'Hund02688' => 'sun', 'Hund09380' => 'sun', 'Hund09381' => 'sun', 'Hund09832' => 'sun', 'Hund09833' => 'sun', 'Hund11351' => 'sun', 'Hund11513' => 'sun', 'Lalb_Chr06g0162591' => 'lal', 'Lalb_Chr06g0162601' => 'lal', 'Lalb_Chr06g0169321' => 'lal', 'Lalb_Chr09g0330951' => 'lal', 'Lalb_Chr16g0387631' => 'lal', 'Lalb_Chr21g0306241' => 'lal', 'Lalb_Chr25g0290051' => 'lal', 'Lalb_Chr25g0290061' => 'lal', 'Lalb_Chr25g0290071' => 'lal', 'Lj1g0003876' => 'lja', 'Lj1P1207T36' => 'lonja', 'Lj2C1156G12' => 'lonja', 'Lj3A793G39' => 'lonja', 'Lj3C580G2' => 'lonja', 'Lj3C780G2' => 'lonja', 'Lj3C780T4' => 'lonja', 'Lj3C793G9' => 'lonja', 'Lj4g0012960' => 'lja', 'Lj5g0021252' => 'lja', 'Lj5g0021484' => 'lja', 'Lj5g0024528' => 'lja', 'Lj6A399T12' => 'lonja', 'Lj6A656G65' => 'lonja', 'Lsat_1_v5_gn_3_125500' => 'lsa', 'Lsat_1_v5_gn_3_125540' => 'lsa', 'Lsat_1_v5_gn_5_72701' => 'lsa', 'Lsat_1_v5_gn_8_91560' => 'lsa', 'Lsat_1_v5_gn_9_9640' => 'lsa', 'Manes.01G200600' => 'mes', 'Manes.01G200700' => 'mes', 'Manes.03G168900' => 'mes', 'Manes.03G169000' => 'mes', 'Manes.05G085801' => 'mes', 'Manes.05G086200' => 'mes', 'Manes.15G036700' => 'mes', 'Manes.15G036900' => 'mes', 'Mapoly0004s0172' => 'mpo', 'Mapoly0023s0001' => 'mpo', 'Mapoly0142s0012' => 'mpo', 'MBI01_g32854_MAGBIO' => 'mbi', 'MBI11_g24427_MAGBIO' => 'mbi', 'MBI11_g47319_MAGBIO' => 'mbi', 'MCO01G433' => 'mco', 'MD00G1187800' => 'mdo', 'MD04G1226500' => 'mdo', 'MD05G1203900' => 'mdo', 'MD10G1191100' => 'mdo', 'MD12G1243500' => 'mdo', 'MD13G1207000' => 'mdo', 'MD13G1207100' => 'mdo', 'MD16G1208600' => 'mdo', 'Medtr1g050352' => 'mtr', 'Medtr1g070385' => 'mtr', 'Medtr1g070450' => 'mtr', 'Medtr1g075200' => 'mtr', 'Medtr1g075250' => 'mtr', 'Medtr1g075260' => 'mtr', 'Medtr1g475250' => 'mtr', 'Medtr4g075450' => 'mtr', 'Medtr7g096300' => 'mtr', 'Medtr8g105110' => 'mtr', 'MELO3C006470.2' => 'cme', 'MELO3C006471.2' => 'cme', 'MELO3C020772.2' => 'cme', 'MELO3C026780.2' => 'cme', 'MELO3C026781.2' => 'cme', 'Migut.D00390' => 'egut', 'Migut.G00435' => 'egut', 'Migut.G00436' => 'egut', 'Migut.G00718' => 'egut', 'MSTRG.21891' => 'ama', 'MSTRG.26910' => 'ama', 'MSTRG.4099' => 'ama', 'MSTRG.9925' => 'ama', 'Nitab4.5_0000165g0010' => 'nta', 'Nitab4.5_0000209g0180' => 'nta', 'Nitab4.5_0000244g0440' => 'nta', 'Nitab4.5_0000525g0220' => 'nta', 'Nitab4.5_0001597g0020' => 'nta', 'Nitab4.5_0001878g0040' => 'nta', 'Nitab4.5_0001878g0060' => 'nta', 'Nitab4.5_0002838g0100' => 'nta', 'Nitab4.5_0002838g0120' => 'nta', 'Nitab4.5_0004798g0030' => 'nta', 'Nitab4.5_0005420g0010' => 'nta', 'Nitab4.5_0005507g0010' => 'nta', 'Nitab4.5_0005574g0020' => 'nta', 'Nitab4.5_0005838g0010' => 'nta', 'Nitab4.5_0010580g0020' => 'nta', 'Nn1g02599' => 'nnu', 'Nn1g02608' => 'nnu', 'Nn3g17742' => 'nnu', 'Nn3g19534' => 'nnu', 'Nn3g19535' => 'nnu', 'Oeu008790.1' => 'oeu', 'Oeu008792.1' => 'oeu', 'Oeu032590.1' => 'oeu', 'Oeu035349.1' => 'oeu', 'Oeu049791.1' => 'oeu', 'Os01g0774500' => 'osa', 'Os03g0628800' => 'osa', 'Os03g0798600' => 'osa', 'Os05g0508800' => 'osa', 'Peaxi162Scf00036g02018' => 'pax', 'Peaxi162Scf00578g00032' => 'pax', 'Peaxi162Scf00578g00317' => 'pax', 'Peaxi162Scf00785g00114' => 'pax', 'Peaxi162Scf00813g00119' => 'pax', 'Peaxi162Scf00906g00227' => 'pax', 'PGR004G0875' => 'pgr', 'PGR004G2424' => 'pgr', 'PGR031G1239' => 'pgr', 'PGR031G2474' => 'pgr', 'PGR044G0423' => 'pgr', 'PGSC0003DMG400001128' => 'stu', 'PGSC0003DMG400007336' => 'stu', 'PGSC0003DMG400016318' => 'stu', 'PGSC0003DMG400016319' => 'stu', 'PGSC0003DMG400018074' => 'stu', 'Phvul.001G157700' => 'pvu', 'Phvul.002G148550' => 'pvu', 'Phvul.002G320200' => 'pvu', 'Phvul.003G089200' => 'pvu', 'Phvul.007G126000' => 'pvu', 'Phvul.007G126100' => 'pvu', 'Phvul.007G178000' => 'pvu', 'Phvul.007G178200' => 'pvu', 'Potri.002G043000' => 'ptr', 'Potri.002G043200' => 'ptr', 'Potri.003G123750' => 'ptr', 'Potri.005G055401' => 'ptr', 'Potri.005G219700' => 'ptr', 'Potri.005G220000' => 'ptr', 'Potri.008G161901' => 'ptr', 'Potri.008G162000' => 'ptr', 'Potri.008G162400' => 'ptr', 'Potri.010G076900' => 'ptr', 'Pp3c12_9180' => 'ppa', 'Pp3c13_19770' => 'ppa', 'Pp3c14_22950' => 'ppa', 'Pp3c16_12160' => 'ppa', 'Pp3c27_7820' => 'ppa', 'Pp3c2_3490' => 'ppa', 'Pp3c3_23700' => 'ppa', 'Pp3c3_36520' => 'ppa', 'Pp3c4_15250' => 'ppa', 'PRCOL_00007002' => 'pco', 'Prupe.1G030600' => 'ppe', 'Prupe.1G030700' => 'ppe', 'Prupe.6G345200' => 'ppe', 'Prupe.8G230300' => 'ppe', 'Prupe.8G230500' => 'ppe', 'Psat3g059600' => 'psa', 'Psat5g200920' => 'psa', 'Psat6g056440' => 'psa', 'Psat6g057360' => 'psa', 'Psat6g134120' => 'psa', 'Psat6g134160' => 'psa', 'Psat7g008640' => 'psa', 'Psat7g185240' => 'psa', 'PSO017G1330' => 'pso', 'PSO063G6097' => 'pso', 'PSO170G0835' => 'pso', 'PSO170G2499' => 'pso', 'PSO210G5058' => 'pso', 'PSO210G6154' => 'pso', 'PSO585G0031' => 'pso', 'PSO832G0264' => 'pso', 'PSO832G4288' => 'pso', 'QL03p027355' => 'qlo', 'QL03p027430' => 'qlo', 'QL04p081380' => 'qlo', 'QL06p015642' => 'qlo', 'QL06p015650' => 'qlo', 'QL06p015686' => 'qlo', 'QL12p042927' => 'qlo', 'QL93p1863_0035' => 'qlo', 'RcHm_v2.0_Chr3g0450581' => 'rch', 'RcHm_v2.0_Chr4g0390371' => 'rch', 'RcHm_v2.0_Chr4g0390381' => 'rch', 'RcHm_v2.0_Chr4g0390491' => 'rch', 'RcHm_v2.0_Chr4g0390501' => 'rch', 'RcHm_v2.0_Chr6g0289231' => 'rch', 'Rhsim04G0190400' => 'rsi', 'Rhsim04G0190500' => 'rsi', 'Rhsim04G0190600' => 'rsi', 'Rhsim13G0031400' => 'rsi', 'Rhsim13G0165600' => 'rsi', 'RhsimUnG0114600' => 'rsi', 'RhsimUnG0114700' => 'rsi', 'Sabra02G0034800' => 'sbr', 'Sabra02G0035100' => 'sbr', 'Sabra05G0168600' => 'sbr', 'Sabra05G0168800' => 'sbr', 'Sabra08G0123700' => 'sbr', 'Sabra10G0031900' => 'sbr', 'Sabra13G0039000' => 'sbr', 'SalBow2G0782' => 'sbo', 'SalBow2G1403' => 'sbo', 'SalBow4G0074' => 'sbo', 'SalBow4G2635' => 'sbo', 'SalBow5G3010' => 'sbo', 'Sc05g0000870' => 'sci', 'Sc05g0000890' => 'sci', 'Sc13g0005000' => 'sci', 'Sc13g0005030' => 'sci', 'Sc19g0003790' => 'sci', 'Sc19g0003800' => 'sci', 'Sed0003467' => 'sed', 'Sed0009355' => 'sed', 'Sed0009894' => 'sed', 'Sed0011972' => 'sed', 'Sed0021483' => 'sed', 'Sed0021750' => 'sed', 'Sed0026279' => 'sed', 'SEGI_05312' => 'sgi', 'SEGI_10112' => 'sgi', 'SEGI_15835' => 'sgi', 'SEGI_30386' => 'sgi', 'SEGI_34122' => 'sgi', 'SEGI_35063' => 'sgi', 'SGA_v2.0_scaffold101G29794' => 'sas', 'SGA_v2.0_scaffold1G00573' => 'sas', 'SGA_v2.0_scaffold79G25637' => 'sas', 'SGA_v2.0_scaffold88G27283' => 'sas', 'SGA_v2.0_scaffold88G27285' => 'sas', 'SGA_v2.0_scaffold88G27331' => 'sas', 'SHI09937' => 'shi', 'SMO119G0302' => 'smo', 'SMO137G0231' => 'smo', 'SMO367G1151' => 'smo', 'Solyc02g082000.3' => 'sly', 'Solyc06g031670.3' => 'sly', 'Solyc06g053810.3' => 'sly', 'Solyc07g025457.1' => 'sly', 'Solyc08g059740.1' => 'sly', 'Solyc08g059750.3' => 'sly', 'Solyc09g083370.3' => 'sly', 'Solyc12g038950.3' => 'sly', 'Sopen02g026630' => 'spe', 'Sopen06g018930' => 'spe', 'Sopen06g018940' => 'spe', 'Sopen08g009460' => 'spe', 'Sopen09g032290' => 'spe', 'Sp1g03080' => 'spa', 'Sp1g03090' => 'spa', 'Sp1g05480' => 'spa', 'Sp2g07860' => 'spa', 'Sp2g08430' => 'spa', 'Sp2g08440' => 'spa', 'Sp2g26200' => 'spa', 'Sp4g13170' => 'spa', 'Sp6g33840' => 'spa', 'SpUn1204_0010' => 'spa', 'TAR365G0908' => 'tar', 'TAR381G1270' => 'tar', 'TAR381G1651' => 'tar', 'TAR625G1131' => 'tar', 'TAR633G0962' => 'tar', 'TAR633G1729' => 'tar', 'TAR633G1864' => 'tar', 'TAR636G0221' => 'tar', 'TAR636G0314' => 'tar', 'TAR636G3202' => 'tar', 'THA.LOC104800805' => 'tha', 'THA.LOC104801096' => 'tha', 'THA.LOC104801555' => 'tha', 'THA.LOC104808491' => 'tha', 'THA.LOC104808595' => 'tha', 'THA.LOC104815985' => 'tha', 'THA.LOC104822250' => 'tha', 'THA.LOC104826071' => 'tha', 'Thecc.01G265200' => 'tca', 'Thecc.01G265300' => 'tca', 'Thecc.01G265700' => 'tca', 'Thecc.03G109100' => 'tca', 'Thecc.04G245900' => 'tca', 'Thecc.04G246000' => 'tca', 'Thhalv10003334m.g' => 'esa', 'Thhalv10005508m.g' => 'esa', 'Thhalv10005643m.g' => 'esa', 'Thhalv10007316m.g' => 'esa', 'Thhalv10009006m.g' => 'esa', 'Thhalv10009309m.g' => 'esa', 'Thhalv10014917m.g' => 'esa', 'Thhalv10014919m.g' => 'esa', 'Thhalv10015393m.g' => 'esa', 'Thhalv10016515m.g' => 'esa', 'Thhalv10029242m.g' => 'esa', 'TPR.G16654' => 'tpr', 'TPR.G20589' => 'tpr', 'TPR.G23029' => 'tpr', 'TPR.G27731' => 'tpr', 'TPR.G28889' => 'tpr', 'TPR.G28899' => 'tpr', 'TPR.G30846' => 'tpr', 'TPR.G5452' => 'tpr', 'TPR.G5713' => 'tpr', 'TPR.G9046' => 'tpr', 'TPR.G9061' => 'tpr', 'TWI09G1075' => 'twi', 'TWI12G0806' => 'twi', 'TWI18G0108' => 'twi', 'TWI53G1361' => 'twi', 'TWI73G0185' => 'twi', 'TWI73G0427' => 'twi', 'unitig_37.g12001' => 'ugi', 'unitig_747.g21660' => 'ugi', 'unitig_748.g7232' => 'ugi', 'unitig_748.g7315' => 'ugi', 'unitig_85.g27262' => 'ugi', 'unitig_92.g28220' => 'ugi', 'vmacro02632' => 'vma', 'vmacro08410' => 'vma', 'vmacro08411' => 'vma', 'vmacro15407' => 'vma', 'VMungo0251G3619' => 'vmu', 'VMungo0720G1204' => 'vmu', 'VMungo0720G1918' => 'vmu', 'VMungo0720G2387' => 'vmu', 'VMungo0720G2961' => 'vmu', 'VMungo1215G2154' => 'vmu', 'VMungo1383G2411' => 'vmu', 'Zm00001eb051130' => 'zma', 'Zm00001eb116830' => 'zma', 'Zm00001eb116850' => 'zma', 'Zm00001eb151740' => 'zma', 'Zm00001eb292360' => 'zma', 'Zm00001eb301640' => 'zma' ), 'gf_id' => 'HOM05D000856', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000856' ), 'data_identifier' => 'HOM05D000856', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000856', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p00010' => 'bna', 'A03p04160' => 'bna', 'A03p17160' => 'bna', 'A04p23370' => 'bna', 'A05p14860' => 'bna', 'A08p37020' => 'bna', 'A09p08050' => 'bna', 'A09p66800' => 'bna', 'A09p67940' => 'bna', 'A10p02680' => 'bna', 'A10p05320' => 'bna', 'Aa31LG1G20560' => 'aar', 'Aa31LG1G20610' => 'aar', 'Aa31LG1G7810' => 'aar', 'Aa31LG5G3590' => 'aar', 'Aa31LG5G6140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3819' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4683' => 'aag', 'Actinidia04480' => 'ach', 'Actinidia05466' => 'ach', 'Actinidia08445' => 'ach', 'Actinidia21170' => 'ach', 'Actinidia24812' => 'ach', 'Actinidia24951' => 'ach', 'Actinidia40088' => 'ach', 'Ah.02g111660' => 'amhyb', 'Ah.11g048900' => 'amhyb', 'Ah.11g049910' => 'amhyb', 'AL1G13870' => 'aly', 'AL1G13880' => 'aly', 'AL1G16760' => 'aly', 'AL390U10020' => 'aly', 'AL4G25520' => 'aly', 'AL6G19890' => 'aly', 'AL6G19900' => 'aly', 'AL6G19910' => 'aly', 'AL8G40100' => 'aly', 'Aqoxy2G03562' => 'aox', 'Aqoxy5G00316' => 'aox', 'Aqoxy5G00926' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1628KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1H403S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2FU6SJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.882I6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8YRY2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YN1SN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AF70II' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZA8L1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F916KL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHRD8H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KTZ8QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S22EMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8M29T' => 'arhy', 'AT1G04270' => 'ath', 'AT1G04280' => 'ath', 'AT1G06750' => 'ath', 'AT1G33850' => 'ath', 'AT2G30630' => 'ath', 'AT5G09490' => 'ath', 'AT5G09500' => 'ath', 'AT5G09510' => 'ath', 'AT5G43640' => 'ath', 'AT5G63070' => 'ath', 'ATR0605G315' => 'atr', 'Atru.chr11.175' => 'acertr', 'Atru.chr11.653' => 'acertr', 'Atru.chr3.1616' => 'acertr', 'Atru.chr4.2230' => 'acertr', 'Atru.chr4.2232' => 'acertr', 'Atru.chr5.1598' => 'acertr', 'Atru.chr5.1600' => 'acertr', 'Atru.chr5.2188' => 'acertr', 'AUR62008326' => 'cqu', 'AUR62011922' => 'cqu', 'AUR62011924' => 'cqu', 'AUR62021771' => 'cqu', 'AUR62032237' => 'cqu', 'AUR62032240' => 'cqu', 'BcaB01g05572' => 'bca', 'BcaB02g10337' => 'bca', 'BcaB04g19944' => 'bca', 'BcaB05g21548' => 'bca', 'BcaB05g21549' => 'bca', 'BcaB05g23227' => 'bca', 'BcaB06g26256' => 'bca', 'BcaB06g26257' => 'bca', 'BcaB06g28379' => 'bca', 'BcaC02g11159' => 'bca', 'BcaC03g13258' => 'bca', 'BcaC03g13259' => 'bca', 'BcaC05g24456' => 'bca', 'BcaC05g24457' => 'bca', 'BcaC07g36922' => 'bca', 'BcaC07g36923' => 'bca', 'BcaC07g42050' => 'bca', 'BcaC07g42176' => 'bca', 'BcaC07g42195' => 'bca', 'BcaC07g42196' => 'bca', 'BcaNung06674' => 'bca', 'BolC2t06351H' => 'bol', 'BolC2t06352H' => 'bol', 'BolC3t12993H' => 'bol', 'BolC4t23525H' => 'bol', 'BolC4t27475H' => 'bol', 'BolC5t29025H' => 'bol', 'BolC5t29026H' => 'bol', 'BolC8t46898H' => 'bol', 'BolC8t46899H' => 'bol', 'BolC8t52630H' => 'bol', 'BolC8t52765H' => 'bol', 'BolC9t53824H' => 'bol', 'BraA03t09760Z' => 'bra', 'BraA03t10990Z' => 'bra', 'BraA05t20413Z' => 'bra', 'BraA08t35602Z' => 'bra', 'BraA09t36458Z' => 'bra', 'BraA09t42018Z' => 'bra', 'BraA09t42129Z' => 'bra', 'BraA10t42536Z' => 'bra', 'BraA10t42537Z' => 'bra', 'C01p10690' => 'bna', 'C02p03890' => 'bna', 'C02p03900' => 'bna', 'C03p04620' => 'bna', 'C04p19870' => 'bna', 'C04p59670' => 'bna', 'C05p02460' => 'bna', 'C05p02470' => 'bna', 'C08p00980' => 'bna', 'C08p00990' => 'bna', 'C08p51030' => 'bna', 'C08p52360' => 'bna', 'C09p09120' => 'bna', 'CAN.G19.15' => 'can', 'CAN.G251.10' => 'can', 'CAN.G251.9' => 'can', 'CAN.G398.24' => 'can', 'CAN.G410.32' => 'can', 'CAN.G881.2' => 'can', 'CANSAT01G3025' => 'cansat', 'CANSAT78G1211' => 'cansat', 'CANSAT78G1218' => 'cansat', 'CANSAT78G1521' => 'cansat', 'CANSAT78G1670' => 'cansat', 'CARHR003600' => 'chi', 'CARHR003610' => 'chi', 'CARHR006290' => 'chi', 'CARHR006430' => 'chi', 'CARHR124110' => 'chi', 'CARHR203870' => 'chi', 'CARHR203880' => 'chi', 'CARHR203890' => 'chi', 'CARHR276880' => 'chi', 'Carub.0001s0346' => 'cru', 'Carub.0001s0347' => 'cru', 'Carub.0001s0607' => 'cru', 'Carub.0003s2768' => 'cru', 'Carub.0003s2769' => 'cru', 'Carub.0004s1178' => 'cru', 'Carub.0006s0806' => 'cru', 'Carub.0006s0807' => 'cru', 'Carub.0006s0808' => 'cru', 'Carub.0008s0501' => 'cru', 'Carub.0008s2379' => 'cru', 'Ca_08655_v3' => 'car', 'Ca_08922_v3' => 'car', 'Ca_08923_v3' => 'car', 'Ca_09119_v3' => 'car', 'Ca_09703_v3' => 'car', 'Ca_09705_v3' => 'car', 'Ca_09835_v3' => 'car', 'Ca_26403_v3' => 'car', 'Ca_30719_v3' => 'car', 'CBR_g17958' => 'cbr', 'CBR_g40516' => 'cbr', 'Cc00_g05350' => 'ccan', 'Cc01_g18690' => 'ccan', 'Cc03_g04830' => 'ccan', 'Cc03_g04850' => 'ccan', 'CDE02G4469' => 'cde', 'CDE06G0883' => 'cde', 'CDE06G1295' => 'cde', 'CDE06G1390' => 'cde', 'CDE07G0584' => 'cde', 'CDE07G1084' => 'cde', 'CDE08G1259' => 'cde', 'Cfa002341' => 'cfa', 'Cfa024337' => 'cfa', 'Ciclev10004749m.g' => 'ccl', 'Ciclev10006127m.g' => 'ccl', 'Ciclev10019720m.g' => 'ccl', 'Ciclev10022652m.g' => 'ccl', 'CiPaw.01G190400' => 'cil', 'CiPaw.01G190500' => 'cil', 'CiPaw.02G116400' => 'cil', 'CiPaw.02G116500' => 'cil', 'CiPaw.04G183000' => 'cil', 'CiPaw.04G183300' => 'cil', 'ClCG05G004610' => 'cla', 'ClCG05G004620' => 'cla', 'ClCG06G006730' => 'cla', 'ClCG06G006740' => 'cla', 'ClCG11G003690' => 'cla', 'COL.COLO4_08276' => 'col', 'COL.COLO4_08277' => 'col', 'COL.COLO4_15787' => 'col', 'COL.COLO4_15789' => 'col', 'Cpa.g.c44815' => 'cpa', 'Cpa.g.sc52.144' => 'cpa', 'Cpa.g.sc58.46' => 'cpa', 'Cpa.g.sc58.47' => 'cpa', 'Cre08.g360900' => 'cre', 'CsaV3_2G013030' => 'csa', 'CsaV3_2G013050' => 'csa', 'CsaV3_2G015620' => 'csa', 'CsaV3_3G012590' => 'csa', 'CsaV3_3G012600' => 'csa', 'CSS0001641' => 'camsi', 'CSS0008310' => 'camsi', 'CSS0013011' => 'camsi', 'CSS0017147' => 'camsi', 'CSS0022970' => 'camsi', 'CSS0025655' => 'camsi', 'CSS0028665' => 'camsi', 'CSS0029117' => 'camsi', 'CSS0032024' => 'camsi', 'CSS0039681' => 'camsi', 'CSS0046516' => 'camsi', 'CSS0050307' => 'camsi', 'DCAR_005871' => 'dca', 'DCAR_007342' => 'dca', 'DCAR_024228' => 'dca', 'DCAR_027277' => 'dca', 'DCAR_030718' => 'dca', 'Dinv20287' => 'din', 'Dinv22461' => 'din', 'Dinv22464' => 'din', 'Dinv29912' => 'din', 'Dinv29913' => 'din', 'Dinv34580' => 'din', 'Dinv34582' => 'din', 'Dinv44632' => 'din', 'Duzib052G0266' => 'dzi', 'Duzib133G0907' => 'dzi', 'Duzib133G1034' => 'dzi', 'Duzib138G0207' => 'dzi', 'Duzib138G0491' => 'dzi', 'Duzib151G0812' => 'dzi', 'Duzib151G1166' => 'dzi', 'Duzib168G0192' => 'dzi', 'Duzib211G0077' => 'dzi', 'Duzib212G0429' => 'dzi', 'Duzib212G0472' => 'dzi', 'ECA233G2617' => 'eca', 'ECA236G4188' => 'eca', 'ECA240G0936' => 'eca', 'ECA240G1129' => 'eca', 'ECA247G0623' => 'eca', 'EL10Ac5g10451' => 'bvu', 'EL10Ac5g10453' => 'bvu', 'EL10Ac5g10894' => 'bvu', 'Eucgr.H00192' => 'egr', 'Eucgr.H00193' => 'egr', 'Eucgr.H00194' => 'egr', 'Eucgr.J01562' => 'egr', 'Eucgr.K03301' => 'egr', 'FAN02G0632' => 'fan', 'FAN05G5378' => 'fan', 'FAN09G3247' => 'fan', 'FAN12G0435' => 'fan', 'FAN12G2426' => 'fan', 'FAN14G1707' => 'fan', 'FAN14G4725' => 'fan', 'FAN15G2071' => 'fan', 'FAN17G3065' => 'fan', 'FAN19G1376' => 'fan', 'FAN20G0354' => 'fan', 'FAN20G2429' => 'fan', 'FAN20G2658' => 'fan', 'FAN24G2343' => 'fan', 'FAN27G2362' => 'fan', 'FAN28G1765' => 'fan', 'FvH4_1g16020' => 'fve', 'FvH4_2g04890' => 'fve', 'FvH4_2g22270' => 'fve', 'FvH4_4g02630' => 'fve', 'FvH4_4g02640' => 'fve', 'FvH4_6g02650' => 'fve', 'Glyma.02G140600' => 'gma', 'Glyma.03G159900' => 'gma', 'Glyma.05G234800' => 'gma', 'Glyma.07G269600' => 'gma', 'Glyma.08G042300' => 'gma', 'Glyma.10G033500' => 'gma', 'Glyma.10G185200' => 'gma', 'Glyma.17G004300' => 'gma', 'Glyma.19G161900' => 'gma', 'Glyma.20G205100' => 'gma', 'Glyma.20G205200' => 'gma', 'Gohir.A01G139101' => 'ghi', 'Gohir.A02G035600' => 'ghi', 'Gohir.A02G117901' => 'ghi', 'Gohir.A07G210100' => 'ghi', 'Gohir.A07G210200' => 'ghi', 'Gohir.A08G061100' => 'ghi', 'Gohir.A09G223000' => 'ghi', 'Gohir.A09G223100' => 'ghi', 'Gohir.A10G113900' => 'ghi', 'Gohir.A10G114000' => 'ghi', 'Gohir.D02G042300' => 'ghi', 'Gohir.D07G216100' => 'ghi', 'Gohir.D07G216200' => 'ghi', 'Gohir.D08G070400' => 'ghi', 'Gohir.D09G225000' => 'ghi', 'Gohir.D09G225100' => 'ghi', 'Gohir.D10G152300' => 'ghi', 'Gohir.D10G153200' => 'ghi', 'Gohir.D11G133701' => 'ghi', 'Gorai.004G074100' => 'gra', 'Gorai.005G046800' => 'gra', 'Gorai.006G246500' => 'gra', 'Gorai.006G246600' => 'gra', 'Gorai.007G142900' => 'gra', 'Gorai.011G171000' => 'gra', 'Gorai.011G171100' => 'gra', 'Gorai.013G104300' => 'gra', 'Gorai.013G104400' => 'gra', 'GSVIVG01000754001' => 'vvi', 'GSVIVG01000756001' => 'vvi', 'GSVIVG01010903001' => 'vvi', 'GSVIVG01017623001' => 'vvi', 'GSVIVG01018113001' => 'vvi', 'GSVIVG01018116001' => 'vvi', 'GSVIVG01018118001' => 'vvi', 'HanXRQChr03g0076211' => 'han', 'HanXRQChr03g0092431' => 'han', 'HanXRQChr03g0092441' => 'han', 'HanXRQChr03g0092591' => 'han', 'HanXRQChr03g0092671' => 'han', 'HanXRQChr03g0092681' => 'han', 'HanXRQChr03g0092691' => 'han', 'HanXRQChr03g0092701' => 'han', 'HanXRQChr03g0092721' => 'han', 'HanXRQChr03g0092731' => 'han', 'HanXRQChr04g0113681' => 'han', 'HanXRQChr10g0281371' => 'han', 'HanXRQChr11g0337141' => 'han', 'HanXRQChr13g0424521' => 'han', 'HanXRQChr13g0424531' => 'han', 'HanXRQChr13g0424541' => 'han', 'HanXRQChr16g0498221' => 'han', 'Haze_04377' => 'cav', 'Haze_11298' => 'cav', 'Haze_24547' => 'cav', 'Haze_24550' => 'cav', 'Haze_26587' => 'cav', 'Hma1.2p1_0650F.1_g195410' => 'hma', 'Hma1.2p1_0893F.1_g233470' => 'hma', 'HPP92_006508' => 'vpl', 'HPP92_024780' => 'vpl', 'Hund02688' => 'sun', 'Hund09380' => 'sun', 'Hund09381' => 'sun', 'Hund09832' => 'sun', 'Hund09833' => 'sun', 'Hund11351' => 'sun', 'Hund11513' => 'sun', 'Lalb_Chr06g0162591' => 'lal', 'Lalb_Chr06g0162601' => 'lal', 'Lalb_Chr06g0169321' => 'lal', 'Lalb_Chr09g0330951' => 'lal', 'Lalb_Chr16g0387631' => 'lal', 'Lalb_Chr21g0306241' => 'lal', 'Lalb_Chr25g0290051' => 'lal', 'Lalb_Chr25g0290061' => 'lal', 'Lalb_Chr25g0290071' => 'lal', 'Lj1g0003876' => 'lja', 'Lj1P1207T36' => 'lonja', 'Lj2C1156G12' => 'lonja', 'Lj3A793G39' => 'lonja', 'Lj3C580G2' => 'lonja', 'Lj3C780G2' => 'lonja', 'Lj3C780T4' => 'lonja', 'Lj3C793G9' => 'lonja', 'Lj4g0012960' => 'lja', 'Lj5g0021252' => 'lja', 'Lj5g0021484' => 'lja', 'Lj5g0024528' => 'lja', 'Lj6A399T12' => 'lonja', 'Lj6A656G65' => 'lonja', 'Lsat_1_v5_gn_3_125500' => 'lsa', 'Lsat_1_v5_gn_3_125540' => 'lsa', 'Lsat_1_v5_gn_5_72701' => 'lsa', 'Lsat_1_v5_gn_8_91560' => 'lsa', 'Lsat_1_v5_gn_9_9640' => 'lsa', 'Manes.01G200600' => 'mes', 'Manes.01G200700' => 'mes', 'Manes.03G168900' => 'mes', 'Manes.03G169000' => 'mes', 'Manes.05G085801' => 'mes', 'Manes.05G086200' => 'mes', 'Manes.15G036700' => 'mes', 'Manes.15G036900' => 'mes', 'Mapoly0004s0172' => 'mpo', 'Mapoly0023s0001' => 'mpo', 'Mapoly0142s0012' => 'mpo', 'MBI01_g32854_MAGBIO' => 'mbi', 'MBI11_g24427_MAGBIO' => 'mbi', 'MBI11_g47319_MAGBIO' => 'mbi', 'MCO01G433' => 'mco', 'MD00G1187800' => 'mdo', 'MD04G1226500' => 'mdo', 'MD05G1203900' => 'mdo', 'MD10G1191100' => 'mdo', 'MD12G1243500' => 'mdo', 'MD13G1207000' => 'mdo', 'MD13G1207100' => 'mdo', 'MD16G1208600' => 'mdo', 'Medtr1g050352' => 'mtr', 'Medtr1g070385' => 'mtr', 'Medtr1g070450' => 'mtr', 'Medtr1g075200' => 'mtr', 'Medtr1g075250' => 'mtr', 'Medtr1g075260' => 'mtr', 'Medtr1g475250' => 'mtr', 'Medtr4g075450' => 'mtr', 'Medtr7g096300' => 'mtr', 'Medtr8g105110' => 'mtr', 'MELO3C006470.2' => 'cme', 'MELO3C006471.2' => 'cme', 'MELO3C020772.2' => 'cme', 'MELO3C026780.2' => 'cme', 'MELO3C026781.2' => 'cme', 'Migut.D00390' => 'egut', 'Migut.G00435' => 'egut', 'Migut.G00436' => 'egut', 'Migut.G00718' => 'egut', 'MSTRG.21891' => 'ama', 'MSTRG.26910' => 'ama', 'MSTRG.4099' => 'ama', 'MSTRG.9925' => 'ama', 'Nitab4.5_0000165g0010' => 'nta', 'Nitab4.5_0000209g0180' => 'nta', 'Nitab4.5_0000244g0440' => 'nta', 'Nitab4.5_0000525g0220' => 'nta', 'Nitab4.5_0001597g0020' => 'nta', 'Nitab4.5_0001878g0040' => 'nta', 'Nitab4.5_0001878g0060' => 'nta', 'Nitab4.5_0002838g0100' => 'nta', 'Nitab4.5_0002838g0120' => 'nta', 'Nitab4.5_0004798g0030' => 'nta', 'Nitab4.5_0005420g0010' => 'nta', 'Nitab4.5_0005507g0010' => 'nta', 'Nitab4.5_0005574g0020' => 'nta', 'Nitab4.5_0005838g0010' => 'nta', 'Nitab4.5_0010580g0020' => 'nta', 'Nn1g02599' => 'nnu', 'Nn1g02608' => 'nnu', 'Nn3g17742' => 'nnu', 'Nn3g19534' => 'nnu', 'Nn3g19535' => 'nnu', 'Oeu008790.1' => 'oeu', 'Oeu008792.1' => 'oeu', 'Oeu032590.1' => 'oeu', 'Oeu035349.1' => 'oeu', 'Oeu049791.1' => 'oeu', 'Os01g0774500' => 'osa', 'Os03g0628800' => 'osa', 'Os03g0798600' => 'osa', 'Os05g0508800' => 'osa', 'Peaxi162Scf00036g02018' => 'pax', 'Peaxi162Scf00578g00032' => 'pax', 'Peaxi162Scf00578g00317' => 'pax', 'Peaxi162Scf00785g00114' => 'pax', 'Peaxi162Scf00813g00119' => 'pax', 'Peaxi162Scf00906g00227' => 'pax', 'PGR004G0875' => 'pgr', 'PGR004G2424' => 'pgr', 'PGR031G1239' => 'pgr', 'PGR031G2474' => 'pgr', 'PGR044G0423' => 'pgr', 'PGSC0003DMG400001128' => 'stu', 'PGSC0003DMG400007336' => 'stu', 'PGSC0003DMG400016318' => 'stu', 'PGSC0003DMG400016319' => 'stu', 'PGSC0003DMG400018074' => 'stu', 'Phvul.001G157700' => 'pvu', 'Phvul.002G148550' => 'pvu', 'Phvul.002G320200' => 'pvu', 'Phvul.003G089200' => 'pvu', 'Phvul.007G126000' => 'pvu', 'Phvul.007G126100' => 'pvu', 'Phvul.007G178000' => 'pvu', 'Phvul.007G178200' => 'pvu', 'Potri.002G043000' => 'ptr', 'Potri.002G043200' => 'ptr', 'Potri.003G123750' => 'ptr', 'Potri.005G055401' => 'ptr', 'Potri.005G219700' => 'ptr', 'Potri.005G220000' => 'ptr', 'Potri.008G161901' => 'ptr', 'Potri.008G162000' => 'ptr', 'Potri.008G162400' => 'ptr', 'Potri.010G076900' => 'ptr', 'Pp3c12_9180' => 'ppa', 'Pp3c13_19770' => 'ppa', 'Pp3c14_22950' => 'ppa', 'Pp3c16_12160' => 'ppa', 'Pp3c27_7820' => 'ppa', 'Pp3c2_3490' => 'ppa', 'Pp3c3_23700' => 'ppa', 'Pp3c3_36520' => 'ppa', 'Pp3c4_15250' => 'ppa', 'PRCOL_00007002' => 'pco', 'Prupe.1G030600' => 'ppe', 'Prupe.1G030700' => 'ppe', 'Prupe.6G345200' => 'ppe', 'Prupe.8G230300' => 'ppe', 'Prupe.8G230500' => 'ppe', 'Psat3g059600' => 'psa', 'Psat5g200920' => 'psa', 'Psat6g056440' => 'psa', 'Psat6g057360' => 'psa', 'Psat6g134120' => 'psa', 'Psat6g134160' => 'psa', 'Psat7g008640' => 'psa', 'Psat7g185240' => 'psa', 'PSO017G1330' => 'pso', 'PSO063G6097' => 'pso', 'PSO170G0835' => 'pso', 'PSO170G2499' => 'pso', 'PSO210G5058' => 'pso', 'PSO210G6154' => 'pso', 'PSO585G0031' => 'pso', 'PSO832G0264' => 'pso', 'PSO832G4288' => 'pso', 'QL03p027355' => 'qlo', 'QL03p027430' => 'qlo', 'QL04p081380' => 'qlo', 'QL06p015642' => 'qlo', 'QL06p015650' => 'qlo', 'QL06p015686' => 'qlo', 'QL12p042927' => 'qlo', 'QL93p1863_0035' => 'qlo', 'RcHm_v2.0_Chr3g0450581' => 'rch', 'RcHm_v2.0_Chr4g0390371' => 'rch', 'RcHm_v2.0_Chr4g0390381' => 'rch', 'RcHm_v2.0_Chr4g0390491' => 'rch', 'RcHm_v2.0_Chr4g0390501' => 'rch', 'RcHm_v2.0_Chr6g0289231' => 'rch', 'Rhsim04G0190400' => 'rsi', 'Rhsim04G0190500' => 'rsi', 'Rhsim04G0190600' => 'rsi', 'Rhsim13G0031400' => 'rsi', 'Rhsim13G0165600' => 'rsi', 'RhsimUnG0114600' => 'rsi', 'RhsimUnG0114700' => 'rsi', 'Sabra02G0034800' => 'sbr', 'Sabra02G0035100' => 'sbr', 'Sabra05G0168600' => 'sbr', 'Sabra05G0168800' => 'sbr', 'Sabra08G0123700' => 'sbr', 'Sabra10G0031900' => 'sbr', 'Sabra13G0039000' => 'sbr', 'SalBow2G0782' => 'sbo', 'SalBow2G1403' => 'sbo', 'SalBow4G0074' => 'sbo', 'SalBow4G2635' => 'sbo', 'SalBow5G3010' => 'sbo', 'Sc05g0000870' => 'sci', 'Sc05g0000890' => 'sci', 'Sc13g0005000' => 'sci', 'Sc13g0005030' => 'sci', 'Sc19g0003790' => 'sci', 'Sc19g0003800' => 'sci', 'Sed0003467' => 'sed', 'Sed0009355' => 'sed', 'Sed0009894' => 'sed', 'Sed0011972' => 'sed', 'Sed0021483' => 'sed', 'Sed0021750' => 'sed', 'Sed0026279' => 'sed', 'SEGI_05312' => 'sgi', 'SEGI_10112' => 'sgi', 'SEGI_15835' => 'sgi', 'SEGI_30386' => 'sgi', 'SEGI_34122' => 'sgi', 'SEGI_35063' => 'sgi', 'SGA_v2.0_scaffold101G29794' => 'sas', 'SGA_v2.0_scaffold1G00573' => 'sas', 'SGA_v2.0_scaffold79G25637' => 'sas', 'SGA_v2.0_scaffold88G27283' => 'sas', 'SGA_v2.0_scaffold88G27285' => 'sas', 'SGA_v2.0_scaffold88G27331' => 'sas', 'SHI09937' => 'shi', 'SMO119G0302' => 'smo', 'SMO137G0231' => 'smo', 'SMO367G1151' => 'smo', 'Solyc02g082000.3' => 'sly', 'Solyc06g031670.3' => 'sly', 'Solyc06g053810.3' => 'sly', 'Solyc07g025457.1' => 'sly', 'Solyc08g059740.1' => 'sly', 'Solyc08g059750.3' => 'sly', 'Solyc09g083370.3' => 'sly', 'Solyc12g038950.3' => 'sly', 'Sopen02g026630' => 'spe', 'Sopen06g018930' => 'spe', 'Sopen06g018940' => 'spe', 'Sopen08g009460' => 'spe', 'Sopen09g032290' => 'spe', 'Sp1g03080' => 'spa', 'Sp1g03090' => 'spa', 'Sp1g05480' => 'spa', 'Sp2g07860' => 'spa', 'Sp2g08430' => 'spa', 'Sp2g08440' => 'spa', 'Sp2g26200' => 'spa', 'Sp4g13170' => 'spa', 'Sp6g33840' => 'spa', 'SpUn1204_0010' => 'spa', 'TAR365G0908' => 'tar', 'TAR381G1270' => 'tar', 'TAR381G1651' => 'tar', 'TAR625G1131' => 'tar', 'TAR633G0962' => 'tar', 'TAR633G1729' => 'tar', 'TAR633G1864' => 'tar', 'TAR636G0221' => 'tar', 'TAR636G0314' => 'tar', 'TAR636G3202' => 'tar', 'THA.LOC104800805' => 'tha', 'THA.LOC104801096' => 'tha', 'THA.LOC104801555' => 'tha', 'THA.LOC104808491' => 'tha', 'THA.LOC104808595' => 'tha', 'THA.LOC104815985' => 'tha', 'THA.LOC104822250' => 'tha', 'THA.LOC104826071' => 'tha', 'Thecc.01G265200' => 'tca', 'Thecc.01G265300' => 'tca', 'Thecc.01G265700' => 'tca', 'Thecc.03G109100' => 'tca', 'Thecc.04G245900' => 'tca', 'Thecc.04G246000' => 'tca', 'Thhalv10003334m.g' => 'esa', 'Thhalv10005508m.g' => 'esa', 'Thhalv10005643m.g' => 'esa', 'Thhalv10007316m.g' => 'esa', 'Thhalv10009006m.g' => 'esa', 'Thhalv10009309m.g' => 'esa', 'Thhalv10014917m.g' => 'esa', 'Thhalv10014919m.g' => 'esa', 'Thhalv10015393m.g' => 'esa', 'Thhalv10016515m.g' => 'esa', 'Thhalv10029242m.g' => 'esa', 'TPR.G16654' => 'tpr', 'TPR.G20589' => 'tpr', 'TPR.G23029' => 'tpr', 'TPR.G27731' => 'tpr', 'TPR.G28889' => 'tpr', 'TPR.G28899' => 'tpr', 'TPR.G30846' => 'tpr', 'TPR.G5452' => 'tpr', 'TPR.G5713' => 'tpr', 'TPR.G9046' => 'tpr', 'TPR.G9061' => 'tpr', 'TWI09G1075' => 'twi', 'TWI12G0806' => 'twi', 'TWI18G0108' => 'twi', 'TWI53G1361' => 'twi', 'TWI73G0185' => 'twi', 'TWI73G0427' => 'twi', 'unitig_37.g12001' => 'ugi', 'unitig_747.g21660' => 'ugi', 'unitig_748.g7232' => 'ugi', 'unitig_748.g7315' => 'ugi', 'unitig_85.g27262' => 'ugi', 'unitig_92.g28220' => 'ugi', 'vmacro02632' => 'vma', 'vmacro08410' => 'vma', 'vmacro08411' => 'vma', 'vmacro15407' => 'vma', 'VMungo0251G3619' => 'vmu', 'VMungo0720G1204' => 'vmu', 'VMungo0720G1918' => 'vmu', 'VMungo0720G2387' => 'vmu', 'VMungo0720G2961' => 'vmu', 'VMungo1215G2154' => 'vmu', 'VMungo1383G2411' => 'vmu', 'Zm00001eb051130' => 'zma', 'Zm00001eb116830' => 'zma', 'Zm00001eb116850' => 'zma', 'Zm00001eb151740' => 'zma', 'Zm00001eb292360' => 'zma', 'Zm00001eb301640' => 'zma' ) $gf_id = 'HOM05D000856' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000856' ) $data_identifier = 'HOM05D000856' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 13, 'ath' => (int) 10, 'atr' => (int) 1, 'acertr' => (int) 8, 'cqu' => (int) 6, 'bca' => (int) 21, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 11, 'car' => (int) 9, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 8, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 5, 'fan' => (int) 16, 'fve' => (int) 6, 'gma' => (int) 11, 'ghi' => (int) 19, 'gra' => (int) 9, 'vvi' => (int) 7, 'han' => (int) 17, 'cav' => (int) 5, 'hma' => (int) 2, 'vpl' => (int) 2, 'sun' => (int) 7, 'lal' => (int) 9, 'lja' => (int) 5, 'lonja' => (int) 9, 'lsa' => (int) 5, 'mes' => (int) 8, 'mpo' => (int) 3, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 10, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 15, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 9, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 9, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 6, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 5, 'spa' => (int) 10, 'tar' => (int) 10, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 11, 'tpr' => (int) 11, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 4, 'vmu' => (int) 7, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb301640' $species_info = array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ) $local_species = 'mtr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000856', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p00010' => 'bna', 'A03p04160' => 'bna', 'A03p17160' => 'bna', 'A04p23370' => 'bna', 'A05p14860' => 'bna', 'A08p37020' => 'bna', 'A09p08050' => 'bna', 'A09p66800' => 'bna', 'A09p67940' => 'bna', 'A10p02680' => 'bna', 'A10p05320' => 'bna', 'Aa31LG1G20560' => 'aar', 'Aa31LG1G20610' => 'aar', 'Aa31LG1G7810' => 'aar', 'Aa31LG5G3590' => 'aar', 'Aa31LG5G6140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3819' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4683' => 'aag', 'Actinidia04480' => 'ach', 'Actinidia05466' => 'ach', 'Actinidia08445' => 'ach', 'Actinidia21170' => 'ach', 'Actinidia24812' => 'ach', 'Actinidia24951' => 'ach', 'Actinidia40088' => 'ach', 'Ah.02g111660' => 'amhyb', 'Ah.11g048900' => 'amhyb', 'Ah.11g049910' => 'amhyb', 'AL1G13870' => 'aly', 'AL1G13880' => 'aly', 'AL1G16760' => 'aly', 'AL390U10020' => 'aly', 'AL4G25520' => 'aly', 'AL6G19890' => 'aly', 'AL6G19900' => 'aly', 'AL6G19910' => 'aly', 'AL8G40100' => 'aly', 'Aqoxy2G03562' => 'aox', 'Aqoxy5G00316' => 'aox', 'Aqoxy5G00926' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1628KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1H403S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2FU6SJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.882I6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8YRY2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YN1SN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AF70II' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZA8L1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F916KL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHRD8H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KTZ8QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S22EMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8M29T' => 'arhy', 'AT1G04270' => 'ath', 'AT1G04280' => 'ath', 'AT1G06750' => 'ath', 'AT1G33850' => 'ath', 'AT2G30630' => 'ath', 'AT5G09490' => 'ath', 'AT5G09500' => 'ath', 'AT5G09510' => 'ath', 'AT5G43640' => 'ath', 'AT5G63070' => 'ath', 'ATR0605G315' => 'atr', 'Atru.chr11.175' => 'acertr', 'Atru.chr11.653' => 'acertr', 'Atru.chr3.1616' => 'acertr', 'Atru.chr4.2230' => 'acertr', 'Atru.chr4.2232' => 'acertr', 'Atru.chr5.1598' => 'acertr', 'Atru.chr5.1600' => 'acertr', 'Atru.chr5.2188' => 'acertr', 'AUR62008326' => 'cqu', 'AUR62011922' => 'cqu', 'AUR62011924' => 'cqu', 'AUR62021771' => 'cqu', 'AUR62032237' => 'cqu', 'AUR62032240' => 'cqu', 'BcaB01g05572' => 'bca', 'BcaB02g10337' => 'bca', 'BcaB04g19944' => 'bca', 'BcaB05g21548' => 'bca', 'BcaB05g21549' => 'bca', 'BcaB05g23227' => 'bca', 'BcaB06g26256' => 'bca', 'BcaB06g26257' => 'bca', 'BcaB06g28379' => 'bca', 'BcaC02g11159' => 'bca', 'BcaC03g13258' => 'bca', 'BcaC03g13259' => 'bca', 'BcaC05g24456' => 'bca', 'BcaC05g24457' => 'bca', 'BcaC07g36922' => 'bca', 'BcaC07g36923' => 'bca', 'BcaC07g42050' => 'bca', 'BcaC07g42176' => 'bca', 'BcaC07g42195' => 'bca', 'BcaC07g42196' => 'bca', 'BcaNung06674' => 'bca', 'BolC2t06351H' => 'bol', 'BolC2t06352H' => 'bol', 'BolC3t12993H' => 'bol', 'BolC4t23525H' => 'bol', 'BolC4t27475H' => 'bol', 'BolC5t29025H' => 'bol', 'BolC5t29026H' => 'bol', 'BolC8t46898H' => 'bol', 'BolC8t46899H' => 'bol', 'BolC8t52630H' => 'bol', 'BolC8t52765H' => 'bol', 'BolC9t53824H' => 'bol', 'BraA03t09760Z' => 'bra', 'BraA03t10990Z' => 'bra', 'BraA05t20413Z' => 'bra', 'BraA08t35602Z' => 'bra', 'BraA09t36458Z' => 'bra', 'BraA09t42018Z' => 'bra', 'BraA09t42129Z' => 'bra', 'BraA10t42536Z' => 'bra', 'BraA10t42537Z' => 'bra', 'C01p10690' => 'bna', 'C02p03890' => 'bna', 'C02p03900' => 'bna', 'C03p04620' => 'bna', 'C04p19870' => 'bna', 'C04p59670' => 'bna', 'C05p02460' => 'bna', 'C05p02470' => 'bna', 'C08p00980' => 'bna', 'C08p00990' => 'bna', 'C08p51030' => 'bna', 'C08p52360' => 'bna', 'C09p09120' => 'bna', 'CAN.G19.15' => 'can', 'CAN.G251.10' => 'can', 'CAN.G251.9' => 'can', 'CAN.G398.24' => 'can', 'CAN.G410.32' => 'can', 'CAN.G881.2' => 'can', 'CANSAT01G3025' => 'cansat', 'CANSAT78G1211' => 'cansat', 'CANSAT78G1218' => 'cansat', 'CANSAT78G1521' => 'cansat', 'CANSAT78G1670' => 'cansat', 'CARHR003600' => 'chi', 'CARHR003610' => 'chi', 'CARHR006290' => 'chi', 'CARHR006430' => 'chi', 'CARHR124110' => 'chi', 'CARHR203870' => 'chi', 'CARHR203880' => 'chi', 'CARHR203890' => 'chi', 'CARHR276880' => 'chi', 'Carub.0001s0346' => 'cru', 'Carub.0001s0347' => 'cru', 'Carub.0001s0607' => 'cru', 'Carub.0003s2768' => 'cru', 'Carub.0003s2769' => 'cru', 'Carub.0004s1178' => 'cru', 'Carub.0006s0806' => 'cru', 'Carub.0006s0807' => 'cru', 'Carub.0006s0808' => 'cru', 'Carub.0008s0501' => 'cru', 'Carub.0008s2379' => 'cru', 'Ca_08655_v3' => 'car', 'Ca_08922_v3' => 'car', 'Ca_08923_v3' => 'car', 'Ca_09119_v3' => 'car', 'Ca_09703_v3' => 'car', 'Ca_09705_v3' => 'car', 'Ca_09835_v3' => 'car', 'Ca_26403_v3' => 'car', 'Ca_30719_v3' => 'car', 'CBR_g17958' => 'cbr', 'CBR_g40516' => 'cbr', 'Cc00_g05350' => 'ccan', 'Cc01_g18690' => 'ccan', 'Cc03_g04830' => 'ccan', 'Cc03_g04850' => 'ccan', 'CDE02G4469' => 'cde', 'CDE06G0883' => 'cde', 'CDE06G1295' => 'cde', 'CDE06G1390' => 'cde', 'CDE07G0584' => 'cde', 'CDE07G1084' => 'cde', 'CDE08G1259' => 'cde', 'Cfa002341' => 'cfa', 'Cfa024337' => 'cfa', 'Ciclev10004749m.g' => 'ccl', 'Ciclev10006127m.g' => 'ccl', 'Ciclev10019720m.g' => 'ccl', 'Ciclev10022652m.g' => 'ccl', 'CiPaw.01G190400' => 'cil', 'CiPaw.01G190500' => 'cil', 'CiPaw.02G116400' => 'cil', 'CiPaw.02G116500' => 'cil', 'CiPaw.04G183000' => 'cil', 'CiPaw.04G183300' => 'cil', 'ClCG05G004610' => 'cla', 'ClCG05G004620' => 'cla', 'ClCG06G006730' => 'cla', 'ClCG06G006740' => 'cla', 'ClCG11G003690' => 'cla', 'COL.COLO4_08276' => 'col', 'COL.COLO4_08277' => 'col', 'COL.COLO4_15787' => 'col', 'COL.COLO4_15789' => 'col', 'Cpa.g.c44815' => 'cpa', 'Cpa.g.sc52.144' => 'cpa', 'Cpa.g.sc58.46' => 'cpa', 'Cpa.g.sc58.47' => 'cpa', 'Cre08.g360900' => 'cre', 'CsaV3_2G013030' => 'csa', 'CsaV3_2G013050' => 'csa', 'CsaV3_2G015620' => 'csa', 'CsaV3_3G012590' => 'csa', 'CsaV3_3G012600' => 'csa', 'CSS0001641' => 'camsi', 'CSS0008310' => 'camsi', 'CSS0013011' => 'camsi', 'CSS0017147' => 'camsi', 'CSS0022970' => 'camsi', 'CSS0025655' => 'camsi', 'CSS0028665' => 'camsi', 'CSS0029117' => 'camsi', 'CSS0032024' => 'camsi', 'CSS0039681' => 'camsi', 'CSS0046516' => 'camsi', 'CSS0050307' => 'camsi', 'DCAR_005871' => 'dca', 'DCAR_007342' => 'dca', 'DCAR_024228' => 'dca', 'DCAR_027277' => 'dca', 'DCAR_030718' => 'dca', 'Dinv20287' => 'din', 'Dinv22461' => 'din', 'Dinv22464' => 'din', 'Dinv29912' => 'din', 'Dinv29913' => 'din', 'Dinv34580' => 'din', 'Dinv34582' => 'din', 'Dinv44632' => 'din', 'Duzib052G0266' => 'dzi', 'Duzib133G0907' => 'dzi', 'Duzib133G1034' => 'dzi', 'Duzib138G0207' => 'dzi', 'Duzib138G0491' => 'dzi', 'Duzib151G0812' => 'dzi', 'Duzib151G1166' => 'dzi', 'Duzib168G0192' => 'dzi', 'Duzib211G0077' => 'dzi', 'Duzib212G0429' => 'dzi', 'Duzib212G0472' => 'dzi', 'ECA233G2617' => 'eca', 'ECA236G4188' => 'eca', 'ECA240G0936' => 'eca', 'ECA240G1129' => 'eca', 'ECA247G0623' => 'eca', 'EL10Ac5g10451' => 'bvu', 'EL10Ac5g10453' => 'bvu', 'EL10Ac5g10894' => 'bvu', 'Eucgr.H00192' => 'egr', 'Eucgr.H00193' => 'egr', 'Eucgr.H00194' => 'egr', 'Eucgr.J01562' => 'egr', 'Eucgr.K03301' => 'egr', 'FAN02G0632' => 'fan', 'FAN05G5378' => 'fan', 'FAN09G3247' => 'fan', 'FAN12G0435' => 'fan', 'FAN12G2426' => 'fan', 'FAN14G1707' => 'fan', 'FAN14G4725' => 'fan', 'FAN15G2071' => 'fan', 'FAN17G3065' => 'fan', 'FAN19G1376' => 'fan', 'FAN20G0354' => 'fan', 'FAN20G2429' => 'fan', 'FAN20G2658' => 'fan', 'FAN24G2343' => 'fan', 'FAN27G2362' => 'fan', 'FAN28G1765' => 'fan', 'FvH4_1g16020' => 'fve', 'FvH4_2g04890' => 'fve', 'FvH4_2g22270' => 'fve', 'FvH4_4g02630' => 'fve', 'FvH4_4g02640' => 'fve', 'FvH4_6g02650' => 'fve', 'Glyma.02G140600' => 'gma', 'Glyma.03G159900' => 'gma', 'Glyma.05G234800' => 'gma', 'Glyma.07G269600' => 'gma', 'Glyma.08G042300' => 'gma', 'Glyma.10G033500' => 'gma', 'Glyma.10G185200' => 'gma', 'Glyma.17G004300' => 'gma', 'Glyma.19G161900' => 'gma', 'Glyma.20G205100' => 'gma', 'Glyma.20G205200' => 'gma', 'Gohir.A01G139101' => 'ghi', 'Gohir.A02G035600' => 'ghi', 'Gohir.A02G117901' => 'ghi', 'Gohir.A07G210100' => 'ghi', 'Gohir.A07G210200' => 'ghi', 'Gohir.A08G061100' => 'ghi', 'Gohir.A09G223000' => 'ghi', 'Gohir.A09G223100' => 'ghi', 'Gohir.A10G113900' => 'ghi', 'Gohir.A10G114000' => 'ghi', 'Gohir.D02G042300' => 'ghi', 'Gohir.D07G216100' => 'ghi', 'Gohir.D07G216200' => 'ghi', 'Gohir.D08G070400' => 'ghi', 'Gohir.D09G225000' => 'ghi', 'Gohir.D09G225100' => 'ghi', 'Gohir.D10G152300' => 'ghi', 'Gohir.D10G153200' => 'ghi', 'Gohir.D11G133701' => 'ghi', 'Gorai.004G074100' => 'gra', 'Gorai.005G046800' => 'gra', 'Gorai.006G246500' => 'gra', 'Gorai.006G246600' => 'gra', 'Gorai.007G142900' => 'gra', 'Gorai.011G171000' => 'gra', 'Gorai.011G171100' => 'gra', 'Gorai.013G104300' => 'gra', 'Gorai.013G104400' => 'gra', 'GSVIVG01000754001' => 'vvi', 'GSVIVG01000756001' => 'vvi', 'GSVIVG01010903001' => 'vvi', 'GSVIVG01017623001' => 'vvi', 'GSVIVG01018113001' => 'vvi', 'GSVIVG01018116001' => 'vvi', 'GSVIVG01018118001' => 'vvi', 'HanXRQChr03g0076211' => 'han', 'HanXRQChr03g0092431' => 'han', 'HanXRQChr03g0092441' => 'han', 'HanXRQChr03g0092591' => 'han', 'HanXRQChr03g0092671' => 'han', 'HanXRQChr03g0092681' => 'han', 'HanXRQChr03g0092691' => 'han', 'HanXRQChr03g0092701' => 'han', 'HanXRQChr03g0092721' => 'han', 'HanXRQChr03g0092731' => 'han', 'HanXRQChr04g0113681' => 'han', 'HanXRQChr10g0281371' => 'han', 'HanXRQChr11g0337141' => 'han', 'HanXRQChr13g0424521' => 'han', 'HanXRQChr13g0424531' => 'han', 'HanXRQChr13g0424541' => 'han', 'HanXRQChr16g0498221' => 'han', 'Haze_04377' => 'cav', 'Haze_11298' => 'cav', 'Haze_24547' => 'cav', 'Haze_24550' => 'cav', 'Haze_26587' => 'cav', 'Hma1.2p1_0650F.1_g195410' => 'hma', 'Hma1.2p1_0893F.1_g233470' => 'hma', 'HPP92_006508' => 'vpl', 'HPP92_024780' => 'vpl', 'Hund02688' => 'sun', 'Hund09380' => 'sun', 'Hund09381' => 'sun', 'Hund09832' => 'sun', 'Hund09833' => 'sun', 'Hund11351' => 'sun', 'Hund11513' => 'sun', 'Lalb_Chr06g0162591' => 'lal', 'Lalb_Chr06g0162601' => 'lal', 'Lalb_Chr06g0169321' => 'lal', 'Lalb_Chr09g0330951' => 'lal', 'Lalb_Chr16g0387631' => 'lal', 'Lalb_Chr21g0306241' => 'lal', 'Lalb_Chr25g0290051' => 'lal', 'Lalb_Chr25g0290061' => 'lal', 'Lalb_Chr25g0290071' => 'lal', 'Lj1g0003876' => 'lja', 'Lj1P1207T36' => 'lonja', 'Lj2C1156G12' => 'lonja', 'Lj3A793G39' => 'lonja', 'Lj3C580G2' => 'lonja', 'Lj3C780G2' => 'lonja', 'Lj3C780T4' => 'lonja', 'Lj3C793G9' => 'lonja', 'Lj4g0012960' => 'lja', 'Lj5g0021252' => 'lja', 'Lj5g0021484' => 'lja', 'Lj5g0024528' => 'lja', 'Lj6A399T12' => 'lonja', 'Lj6A656G65' => 'lonja', 'Lsat_1_v5_gn_3_125500' => 'lsa', 'Lsat_1_v5_gn_3_125540' => 'lsa', 'Lsat_1_v5_gn_5_72701' => 'lsa', 'Lsat_1_v5_gn_8_91560' => 'lsa', 'Lsat_1_v5_gn_9_9640' => 'lsa', 'Manes.01G200600' => 'mes', 'Manes.01G200700' => 'mes', 'Manes.03G168900' => 'mes', 'Manes.03G169000' => 'mes', 'Manes.05G085801' => 'mes', 'Manes.05G086200' => 'mes', 'Manes.15G036700' => 'mes', 'Manes.15G036900' => 'mes', 'Mapoly0004s0172' => 'mpo', 'Mapoly0023s0001' => 'mpo', 'Mapoly0142s0012' => 'mpo', 'MBI01_g32854_MAGBIO' => 'mbi', 'MBI11_g24427_MAGBIO' => 'mbi', 'MBI11_g47319_MAGBIO' => 'mbi', 'MCO01G433' => 'mco', 'MD00G1187800' => 'mdo', 'MD04G1226500' => 'mdo', 'MD05G1203900' => 'mdo', 'MD10G1191100' => 'mdo', 'MD12G1243500' => 'mdo', 'MD13G1207000' => 'mdo', 'MD13G1207100' => 'mdo', 'MD16G1208600' => 'mdo', 'Medtr1g050352' => 'mtr', 'Medtr1g070385' => 'mtr', 'Medtr1g070450' => 'mtr', 'Medtr1g075200' => 'mtr', 'Medtr1g075250' => 'mtr', 'Medtr1g075260' => 'mtr', 'Medtr1g475250' => 'mtr', 'Medtr4g075450' => 'mtr', 'Medtr7g096300' => 'mtr', 'Medtr8g105110' => 'mtr', 'MELO3C006470.2' => 'cme', 'MELO3C006471.2' => 'cme', 'MELO3C020772.2' => 'cme', 'MELO3C026780.2' => 'cme', 'MELO3C026781.2' => 'cme', 'Migut.D00390' => 'egut', 'Migut.G00435' => 'egut', 'Migut.G00436' => 'egut', 'Migut.G00718' => 'egut', 'MSTRG.21891' => 'ama', 'MSTRG.26910' => 'ama', 'MSTRG.4099' => 'ama', 'MSTRG.9925' => 'ama', 'Nitab4.5_0000165g0010' => 'nta', 'Nitab4.5_0000209g0180' => 'nta', 'Nitab4.5_0000244g0440' => 'nta', 'Nitab4.5_0000525g0220' => 'nta', 'Nitab4.5_0001597g0020' => 'nta', 'Nitab4.5_0001878g0040' => 'nta', 'Nitab4.5_0001878g0060' => 'nta', 'Nitab4.5_0002838g0100' => 'nta', 'Nitab4.5_0002838g0120' => 'nta', 'Nitab4.5_0004798g0030' => 'nta', 'Nitab4.5_0005420g0010' => 'nta', 'Nitab4.5_0005507g0010' => 'nta', 'Nitab4.5_0005574g0020' => 'nta', 'Nitab4.5_0005838g0010' => 'nta', 'Nitab4.5_0010580g0020' => 'nta', 'Nn1g02599' => 'nnu', 'Nn1g02608' => 'nnu', 'Nn3g17742' => 'nnu', 'Nn3g19534' => 'nnu', 'Nn3g19535' => 'nnu', 'Oeu008790.1' => 'oeu', 'Oeu008792.1' => 'oeu', 'Oeu032590.1' => 'oeu', 'Oeu035349.1' => 'oeu', 'Oeu049791.1' => 'oeu', 'Os01g0774500' => 'osa', 'Os03g0628800' => 'osa', 'Os03g0798600' => 'osa', 'Os05g0508800' => 'osa', 'Peaxi162Scf00036g02018' => 'pax', 'Peaxi162Scf00578g00032' => 'pax', 'Peaxi162Scf00578g00317' => 'pax', 'Peaxi162Scf00785g00114' => 'pax', 'Peaxi162Scf00813g00119' => 'pax', 'Peaxi162Scf00906g00227' => 'pax', 'PGR004G0875' => 'pgr', 'PGR004G2424' => 'pgr', 'PGR031G1239' => 'pgr', 'PGR031G2474' => 'pgr', 'PGR044G0423' => 'pgr', 'PGSC0003DMG400001128' => 'stu', 'PGSC0003DMG400007336' => 'stu', 'PGSC0003DMG400016318' => 'stu', 'PGSC0003DMG400016319' => 'stu', 'PGSC0003DMG400018074' => 'stu', 'Phvul.001G157700' => 'pvu', 'Phvul.002G148550' => 'pvu', 'Phvul.002G320200' => 'pvu', 'Phvul.003G089200' => 'pvu', 'Phvul.007G126000' => 'pvu', 'Phvul.007G126100' => 'pvu', 'Phvul.007G178000' => 'pvu', 'Phvul.007G178200' => 'pvu', 'Potri.002G043000' => 'ptr', 'Potri.002G043200' => 'ptr', 'Potri.003G123750' => 'ptr', 'Potri.005G055401' => 'ptr', 'Potri.005G219700' => 'ptr', 'Potri.005G220000' => 'ptr', 'Potri.008G161901' => 'ptr', 'Potri.008G162000' => 'ptr', 'Potri.008G162400' => 'ptr', 'Potri.010G076900' => 'ptr', 'Pp3c12_9180' => 'ppa', 'Pp3c13_19770' => 'ppa', 'Pp3c14_22950' => 'ppa', 'Pp3c16_12160' => 'ppa', 'Pp3c27_7820' => 'ppa', 'Pp3c2_3490' => 'ppa', 'Pp3c3_23700' => 'ppa', 'Pp3c3_36520' => 'ppa', 'Pp3c4_15250' => 'ppa', 'PRCOL_00007002' => 'pco', 'Prupe.1G030600' => 'ppe', 'Prupe.1G030700' => 'ppe', 'Prupe.6G345200' => 'ppe', 'Prupe.8G230300' => 'ppe', 'Prupe.8G230500' => 'ppe', 'Psat3g059600' => 'psa', 'Psat5g200920' => 'psa', 'Psat6g056440' => 'psa', 'Psat6g057360' => 'psa', 'Psat6g134120' => 'psa', 'Psat6g134160' => 'psa', 'Psat7g008640' => 'psa', 'Psat7g185240' => 'psa', 'PSO017G1330' => 'pso', 'PSO063G6097' => 'pso', 'PSO170G0835' => 'pso', 'PSO170G2499' => 'pso', 'PSO210G5058' => 'pso', 'PSO210G6154' => 'pso', 'PSO585G0031' => 'pso', 'PSO832G0264' => 'pso', 'PSO832G4288' => 'pso', 'QL03p027355' => 'qlo', 'QL03p027430' => 'qlo', 'QL04p081380' => 'qlo', 'QL06p015642' => 'qlo', 'QL06p015650' => 'qlo', 'QL06p015686' => 'qlo', 'QL12p042927' => 'qlo', 'QL93p1863_0035' => 'qlo', 'RcHm_v2.0_Chr3g0450581' => 'rch', 'RcHm_v2.0_Chr4g0390371' => 'rch', 'RcHm_v2.0_Chr4g0390381' => 'rch', 'RcHm_v2.0_Chr4g0390491' => 'rch', 'RcHm_v2.0_Chr4g0390501' => 'rch', 'RcHm_v2.0_Chr6g0289231' => 'rch', 'Rhsim04G0190400' => 'rsi', 'Rhsim04G0190500' => 'rsi', 'Rhsim04G0190600' => 'rsi', 'Rhsim13G0031400' => 'rsi', 'Rhsim13G0165600' => 'rsi', 'RhsimUnG0114600' => 'rsi', 'RhsimUnG0114700' => 'rsi', 'Sabra02G0034800' => 'sbr', 'Sabra02G0035100' => 'sbr', 'Sabra05G0168600' => 'sbr', 'Sabra05G0168800' => 'sbr', 'Sabra08G0123700' => 'sbr', 'Sabra10G0031900' => 'sbr', 'Sabra13G0039000' => 'sbr', 'SalBow2G0782' => 'sbo', 'SalBow2G1403' => 'sbo', 'SalBow4G0074' => 'sbo', 'SalBow4G2635' => 'sbo', 'SalBow5G3010' => 'sbo', 'Sc05g0000870' => 'sci', 'Sc05g0000890' => 'sci', 'Sc13g0005000' => 'sci', 'Sc13g0005030' => 'sci', 'Sc19g0003790' => 'sci', 'Sc19g0003800' => 'sci', 'Sed0003467' => 'sed', 'Sed0009355' => 'sed', 'Sed0009894' => 'sed', 'Sed0011972' => 'sed', 'Sed0021483' => 'sed', 'Sed0021750' => 'sed', 'Sed0026279' => 'sed', 'SEGI_05312' => 'sgi', 'SEGI_10112' => 'sgi', 'SEGI_15835' => 'sgi', 'SEGI_30386' => 'sgi', 'SEGI_34122' => 'sgi', 'SEGI_35063' => 'sgi', 'SGA_v2.0_scaffold101G29794' => 'sas', 'SGA_v2.0_scaffold1G00573' => 'sas', 'SGA_v2.0_scaffold79G25637' => 'sas', 'SGA_v2.0_scaffold88G27283' => 'sas', 'SGA_v2.0_scaffold88G27285' => 'sas', 'SGA_v2.0_scaffold88G27331' => 'sas', 'SHI09937' => 'shi', 'SMO119G0302' => 'smo', 'SMO137G0231' => 'smo', 'SMO367G1151' => 'smo', 'Solyc02g082000.3' => 'sly', 'Solyc06g031670.3' => 'sly', 'Solyc06g053810.3' => 'sly', 'Solyc07g025457.1' => 'sly', 'Solyc08g059740.1' => 'sly', 'Solyc08g059750.3' => 'sly', 'Solyc09g083370.3' => 'sly', 'Solyc12g038950.3' => 'sly', 'Sopen02g026630' => 'spe', 'Sopen06g018930' => 'spe', 'Sopen06g018940' => 'spe', 'Sopen08g009460' => 'spe', 'Sopen09g032290' => 'spe', 'Sp1g03080' => 'spa', 'Sp1g03090' => 'spa', 'Sp1g05480' => 'spa', 'Sp2g07860' => 'spa', 'Sp2g08430' => 'spa', 'Sp2g08440' => 'spa', 'Sp2g26200' => 'spa', 'Sp4g13170' => 'spa', 'Sp6g33840' => 'spa', 'SpUn1204_0010' => 'spa', 'TAR365G0908' => 'tar', 'TAR381G1270' => 'tar', 'TAR381G1651' => 'tar', 'TAR625G1131' => 'tar', 'TAR633G0962' => 'tar', 'TAR633G1729' => 'tar', 'TAR633G1864' => 'tar', 'TAR636G0221' => 'tar', 'TAR636G0314' => 'tar', 'TAR636G3202' => 'tar', 'THA.LOC104800805' => 'tha', 'THA.LOC104801096' => 'tha', 'THA.LOC104801555' => 'tha', 'THA.LOC104808491' => 'tha', 'THA.LOC104808595' => 'tha', 'THA.LOC104815985' => 'tha', 'THA.LOC104822250' => 'tha', 'THA.LOC104826071' => 'tha', 'Thecc.01G265200' => 'tca', 'Thecc.01G265300' => 'tca', 'Thecc.01G265700' => 'tca', 'Thecc.03G109100' => 'tca', 'Thecc.04G245900' => 'tca', 'Thecc.04G246000' => 'tca', 'Thhalv10003334m.g' => 'esa', 'Thhalv10005508m.g' => 'esa', 'Thhalv10005643m.g' => 'esa', 'Thhalv10007316m.g' => 'esa', 'Thhalv10009006m.g' => 'esa', 'Thhalv10009309m.g' => 'esa', 'Thhalv10014917m.g' => 'esa', 'Thhalv10014919m.g' => 'esa', 'Thhalv10015393m.g' => 'esa', 'Thhalv10016515m.g' => 'esa', 'Thhalv10029242m.g' => 'esa', 'TPR.G16654' => 'tpr', 'TPR.G20589' => 'tpr', 'TPR.G23029' => 'tpr', 'TPR.G27731' => 'tpr', 'TPR.G28889' => 'tpr', 'TPR.G28899' => 'tpr', 'TPR.G30846' => 'tpr', 'TPR.G5452' => 'tpr', 'TPR.G5713' => 'tpr', 'TPR.G9046' => 'tpr', 'TPR.G9061' => 'tpr', 'TWI09G1075' => 'twi', 'TWI12G0806' => 'twi', 'TWI18G0108' => 'twi', 'TWI53G1361' => 'twi', 'TWI73G0185' => 'twi', 'TWI73G0427' => 'twi', 'unitig_37.g12001' => 'ugi', 'unitig_747.g21660' => 'ugi', 'unitig_748.g7232' => 'ugi', 'unitig_748.g7315' => 'ugi', 'unitig_85.g27262' => 'ugi', 'unitig_92.g28220' => 'ugi', 'vmacro02632' => 'vma', 'vmacro08410' => 'vma', 'vmacro08411' => 'vma', 'vmacro15407' => 'vma', 'VMungo0251G3619' => 'vmu', 'VMungo0720G1204' => 'vmu', 'VMungo0720G1918' => 'vmu', 'VMungo0720G2387' => 'vmu', 'VMungo0720G2961' => 'vmu', 'VMungo1215G2154' => 'vmu', 'VMungo1383G2411' => 'vmu', 'Zm00001eb051130' => 'zma', 'Zm00001eb116830' => 'zma', 'Zm00001eb116850' => 'zma', 'Zm00001eb151740' => 'zma', 'Zm00001eb292360' => 'zma', 'Zm00001eb301640' => 'zma' ), 'gf_id' => 'HOM05D000856', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000856' ), 'data_identifier' => 'HOM05D000856', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000856', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p00010' => 'bna', 'A03p04160' => 'bna', 'A03p17160' => 'bna', 'A04p23370' => 'bna', 'A05p14860' => 'bna', 'A08p37020' => 'bna', 'A09p08050' => 'bna', 'A09p66800' => 'bna', 'A09p67940' => 'bna', 'A10p02680' => 'bna', 'A10p05320' => 'bna', 'Aa31LG1G20560' => 'aar', 'Aa31LG1G20610' => 'aar', 'Aa31LG1G7810' => 'aar', 'Aa31LG5G3590' => 'aar', 'Aa31LG5G6140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3819' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4683' => 'aag', 'Actinidia04480' => 'ach', 'Actinidia05466' => 'ach', 'Actinidia08445' => 'ach', 'Actinidia21170' => 'ach', 'Actinidia24812' => 'ach', 'Actinidia24951' => 'ach', 'Actinidia40088' => 'ach', 'Ah.02g111660' => 'amhyb', 'Ah.11g048900' => 'amhyb', 'Ah.11g049910' => 'amhyb', 'AL1G13870' => 'aly', 'AL1G13880' => 'aly', 'AL1G16760' => 'aly', 'AL390U10020' => 'aly', 'AL4G25520' => 'aly', 'AL6G19890' => 'aly', 'AL6G19900' => 'aly', 'AL6G19910' => 'aly', 'AL8G40100' => 'aly', 'Aqoxy2G03562' => 'aox', 'Aqoxy5G00316' => 'aox', 'Aqoxy5G00926' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1628KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1H403S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2FU6SJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.882I6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8YRY2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YN1SN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AF70II' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZA8L1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F916KL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHRD8H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KTZ8QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S22EMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8M29T' => 'arhy', 'AT1G04270' => 'ath', 'AT1G04280' => 'ath', 'AT1G06750' => 'ath', 'AT1G33850' => 'ath', 'AT2G30630' => 'ath', 'AT5G09490' => 'ath', 'AT5G09500' => 'ath', 'AT5G09510' => 'ath', 'AT5G43640' => 'ath', 'AT5G63070' => 'ath', 'ATR0605G315' => 'atr', 'Atru.chr11.175' => 'acertr', 'Atru.chr11.653' => 'acertr', 'Atru.chr3.1616' => 'acertr', 'Atru.chr4.2230' => 'acertr', 'Atru.chr4.2232' => 'acertr', 'Atru.chr5.1598' => 'acertr', 'Atru.chr5.1600' => 'acertr', 'Atru.chr5.2188' => 'acertr', 'AUR62008326' => 'cqu', 'AUR62011922' => 'cqu', 'AUR62011924' => 'cqu', 'AUR62021771' => 'cqu', 'AUR62032237' => 'cqu', 'AUR62032240' => 'cqu', 'BcaB01g05572' => 'bca', 'BcaB02g10337' => 'bca', 'BcaB04g19944' => 'bca', 'BcaB05g21548' => 'bca', 'BcaB05g21549' => 'bca', 'BcaB05g23227' => 'bca', 'BcaB06g26256' => 'bca', 'BcaB06g26257' => 'bca', 'BcaB06g28379' => 'bca', 'BcaC02g11159' => 'bca', 'BcaC03g13258' => 'bca', 'BcaC03g13259' => 'bca', 'BcaC05g24456' => 'bca', 'BcaC05g24457' => 'bca', 'BcaC07g36922' => 'bca', 'BcaC07g36923' => 'bca', 'BcaC07g42050' => 'bca', 'BcaC07g42176' => 'bca', 'BcaC07g42195' => 'bca', 'BcaC07g42196' => 'bca', 'BcaNung06674' => 'bca', 'BolC2t06351H' => 'bol', 'BolC2t06352H' => 'bol', 'BolC3t12993H' => 'bol', 'BolC4t23525H' => 'bol', 'BolC4t27475H' => 'bol', 'BolC5t29025H' => 'bol', 'BolC5t29026H' => 'bol', 'BolC8t46898H' => 'bol', 'BolC8t46899H' => 'bol', 'BolC8t52630H' => 'bol', 'BolC8t52765H' => 'bol', 'BolC9t53824H' => 'bol', 'BraA03t09760Z' => 'bra', 'BraA03t10990Z' => 'bra', 'BraA05t20413Z' => 'bra', 'BraA08t35602Z' => 'bra', 'BraA09t36458Z' => 'bra', 'BraA09t42018Z' => 'bra', 'BraA09t42129Z' => 'bra', 'BraA10t42536Z' => 'bra', 'BraA10t42537Z' => 'bra', 'C01p10690' => 'bna', 'C02p03890' => 'bna', 'C02p03900' => 'bna', 'C03p04620' => 'bna', 'C04p19870' => 'bna', 'C04p59670' => 'bna', 'C05p02460' => 'bna', 'C05p02470' => 'bna', 'C08p00980' => 'bna', 'C08p00990' => 'bna', 'C08p51030' => 'bna', 'C08p52360' => 'bna', 'C09p09120' => 'bna', 'CAN.G19.15' => 'can', 'CAN.G251.10' => 'can', 'CAN.G251.9' => 'can', 'CAN.G398.24' => 'can', 'CAN.G410.32' => 'can', 'CAN.G881.2' => 'can', 'CANSAT01G3025' => 'cansat', 'CANSAT78G1211' => 'cansat', 'CANSAT78G1218' => 'cansat', 'CANSAT78G1521' => 'cansat', 'CANSAT78G1670' => 'cansat', 'CARHR003600' => 'chi', 'CARHR003610' => 'chi', 'CARHR006290' => 'chi', 'CARHR006430' => 'chi', 'CARHR124110' => 'chi', 'CARHR203870' => 'chi', 'CARHR203880' => 'chi', 'CARHR203890' => 'chi', 'CARHR276880' => 'chi', 'Carub.0001s0346' => 'cru', 'Carub.0001s0347' => 'cru', 'Carub.0001s0607' => 'cru', 'Carub.0003s2768' => 'cru', 'Carub.0003s2769' => 'cru', 'Carub.0004s1178' => 'cru', 'Carub.0006s0806' => 'cru', 'Carub.0006s0807' => 'cru', 'Carub.0006s0808' => 'cru', 'Carub.0008s0501' => 'cru', 'Carub.0008s2379' => 'cru', 'Ca_08655_v3' => 'car', 'Ca_08922_v3' => 'car', 'Ca_08923_v3' => 'car', 'Ca_09119_v3' => 'car', 'Ca_09703_v3' => 'car', 'Ca_09705_v3' => 'car', 'Ca_09835_v3' => 'car', 'Ca_26403_v3' => 'car', 'Ca_30719_v3' => 'car', 'CBR_g17958' => 'cbr', 'CBR_g40516' => 'cbr', 'Cc00_g05350' => 'ccan', 'Cc01_g18690' => 'ccan', 'Cc03_g04830' => 'ccan', 'Cc03_g04850' => 'ccan', 'CDE02G4469' => 'cde', 'CDE06G0883' => 'cde', 'CDE06G1295' => 'cde', 'CDE06G1390' => 'cde', 'CDE07G0584' => 'cde', 'CDE07G1084' => 'cde', 'CDE08G1259' => 'cde', 'Cfa002341' => 'cfa', 'Cfa024337' => 'cfa', 'Ciclev10004749m.g' => 'ccl', 'Ciclev10006127m.g' => 'ccl', 'Ciclev10019720m.g' => 'ccl', 'Ciclev10022652m.g' => 'ccl', 'CiPaw.01G190400' => 'cil', 'CiPaw.01G190500' => 'cil', 'CiPaw.02G116400' => 'cil', 'CiPaw.02G116500' => 'cil', 'CiPaw.04G183000' => 'cil', 'CiPaw.04G183300' => 'cil', 'ClCG05G004610' => 'cla', 'ClCG05G004620' => 'cla', 'ClCG06G006730' => 'cla', 'ClCG06G006740' => 'cla', 'ClCG11G003690' => 'cla', 'COL.COLO4_08276' => 'col', 'COL.COLO4_08277' => 'col', 'COL.COLO4_15787' => 'col', 'COL.COLO4_15789' => 'col', 'Cpa.g.c44815' => 'cpa', 'Cpa.g.sc52.144' => 'cpa', 'Cpa.g.sc58.46' => 'cpa', 'Cpa.g.sc58.47' => 'cpa', 'Cre08.g360900' => 'cre', 'CsaV3_2G013030' => 'csa', 'CsaV3_2G013050' => 'csa', 'CsaV3_2G015620' => 'csa', 'CsaV3_3G012590' => 'csa', 'CsaV3_3G012600' => 'csa', 'CSS0001641' => 'camsi', 'CSS0008310' => 'camsi', 'CSS0013011' => 'camsi', 'CSS0017147' => 'camsi', 'CSS0022970' => 'camsi', 'CSS0025655' => 'camsi', 'CSS0028665' => 'camsi', 'CSS0029117' => 'camsi', 'CSS0032024' => 'camsi', 'CSS0039681' => 'camsi', 'CSS0046516' => 'camsi', 'CSS0050307' => 'camsi', 'DCAR_005871' => 'dca', 'DCAR_007342' => 'dca', 'DCAR_024228' => 'dca', 'DCAR_027277' => 'dca', 'DCAR_030718' => 'dca', 'Dinv20287' => 'din', 'Dinv22461' => 'din', 'Dinv22464' => 'din', 'Dinv29912' => 'din', 'Dinv29913' => 'din', 'Dinv34580' => 'din', 'Dinv34582' => 'din', 'Dinv44632' => 'din', 'Duzib052G0266' => 'dzi', 'Duzib133G0907' => 'dzi', 'Duzib133G1034' => 'dzi', 'Duzib138G0207' => 'dzi', 'Duzib138G0491' => 'dzi', 'Duzib151G0812' => 'dzi', 'Duzib151G1166' => 'dzi', 'Duzib168G0192' => 'dzi', 'Duzib211G0077' => 'dzi', 'Duzib212G0429' => 'dzi', 'Duzib212G0472' => 'dzi', 'ECA233G2617' => 'eca', 'ECA236G4188' => 'eca', 'ECA240G0936' => 'eca', 'ECA240G1129' => 'eca', 'ECA247G0623' => 'eca', 'EL10Ac5g10451' => 'bvu', 'EL10Ac5g10453' => 'bvu', 'EL10Ac5g10894' => 'bvu', 'Eucgr.H00192' => 'egr', 'Eucgr.H00193' => 'egr', 'Eucgr.H00194' => 'egr', 'Eucgr.J01562' => 'egr', 'Eucgr.K03301' => 'egr', 'FAN02G0632' => 'fan', 'FAN05G5378' => 'fan', 'FAN09G3247' => 'fan', 'FAN12G0435' => 'fan', 'FAN12G2426' => 'fan', 'FAN14G1707' => 'fan', 'FAN14G4725' => 'fan', 'FAN15G2071' => 'fan', 'FAN17G3065' => 'fan', 'FAN19G1376' => 'fan', 'FAN20G0354' => 'fan', 'FAN20G2429' => 'fan', 'FAN20G2658' => 'fan', 'FAN24G2343' => 'fan', 'FAN27G2362' => 'fan', 'FAN28G1765' => 'fan', 'FvH4_1g16020' => 'fve', 'FvH4_2g04890' => 'fve', 'FvH4_2g22270' => 'fve', 'FvH4_4g02630' => 'fve', 'FvH4_4g02640' => 'fve', 'FvH4_6g02650' => 'fve', 'Glyma.02G140600' => 'gma', 'Glyma.03G159900' => 'gma', 'Glyma.05G234800' => 'gma', 'Glyma.07G269600' => 'gma', 'Glyma.08G042300' => 'gma', 'Glyma.10G033500' => 'gma', 'Glyma.10G185200' => 'gma', 'Glyma.17G004300' => 'gma', 'Glyma.19G161900' => 'gma', 'Glyma.20G205100' => 'gma', 'Glyma.20G205200' => 'gma', 'Gohir.A01G139101' => 'ghi', 'Gohir.A02G035600' => 'ghi', 'Gohir.A02G117901' => 'ghi', 'Gohir.A07G210100' => 'ghi', 'Gohir.A07G210200' => 'ghi', 'Gohir.A08G061100' => 'ghi', 'Gohir.A09G223000' => 'ghi', 'Gohir.A09G223100' => 'ghi', 'Gohir.A10G113900' => 'ghi', 'Gohir.A10G114000' => 'ghi', 'Gohir.D02G042300' => 'ghi', 'Gohir.D07G216100' => 'ghi', 'Gohir.D07G216200' => 'ghi', 'Gohir.D08G070400' => 'ghi', 'Gohir.D09G225000' => 'ghi', 'Gohir.D09G225100' => 'ghi', 'Gohir.D10G152300' => 'ghi', 'Gohir.D10G153200' => 'ghi', 'Gohir.D11G133701' => 'ghi', 'Gorai.004G074100' => 'gra', 'Gorai.005G046800' => 'gra', 'Gorai.006G246500' => 'gra', 'Gorai.006G246600' => 'gra', 'Gorai.007G142900' => 'gra', 'Gorai.011G171000' => 'gra', 'Gorai.011G171100' => 'gra', 'Gorai.013G104300' => 'gra', 'Gorai.013G104400' => 'gra', 'GSVIVG01000754001' => 'vvi', 'GSVIVG01000756001' => 'vvi', 'GSVIVG01010903001' => 'vvi', 'GSVIVG01017623001' => 'vvi', 'GSVIVG01018113001' => 'vvi', 'GSVIVG01018116001' => 'vvi', 'GSVIVG01018118001' => 'vvi', 'HanXRQChr03g0076211' => 'han', 'HanXRQChr03g0092431' => 'han', 'HanXRQChr03g0092441' => 'han', 'HanXRQChr03g0092591' => 'han', 'HanXRQChr03g0092671' => 'han', 'HanXRQChr03g0092681' => 'han', 'HanXRQChr03g0092691' => 'han', 'HanXRQChr03g0092701' => 'han', 'HanXRQChr03g0092721' => 'han', 'HanXRQChr03g0092731' => 'han', 'HanXRQChr04g0113681' => 'han', 'HanXRQChr10g0281371' => 'han', 'HanXRQChr11g0337141' => 'han', 'HanXRQChr13g0424521' => 'han', 'HanXRQChr13g0424531' => 'han', 'HanXRQChr13g0424541' => 'han', 'HanXRQChr16g0498221' => 'han', 'Haze_04377' => 'cav', 'Haze_11298' => 'cav', 'Haze_24547' => 'cav', 'Haze_24550' => 'cav', 'Haze_26587' => 'cav', 'Hma1.2p1_0650F.1_g195410' => 'hma', 'Hma1.2p1_0893F.1_g233470' => 'hma', 'HPP92_006508' => 'vpl', 'HPP92_024780' => 'vpl', 'Hund02688' => 'sun', 'Hund09380' => 'sun', 'Hund09381' => 'sun', 'Hund09832' => 'sun', 'Hund09833' => 'sun', 'Hund11351' => 'sun', 'Hund11513' => 'sun', 'Lalb_Chr06g0162591' => 'lal', 'Lalb_Chr06g0162601' => 'lal', 'Lalb_Chr06g0169321' => 'lal', 'Lalb_Chr09g0330951' => 'lal', 'Lalb_Chr16g0387631' => 'lal', 'Lalb_Chr21g0306241' => 'lal', 'Lalb_Chr25g0290051' => 'lal', 'Lalb_Chr25g0290061' => 'lal', 'Lalb_Chr25g0290071' => 'lal', 'Lj1g0003876' => 'lja', 'Lj1P1207T36' => 'lonja', 'Lj2C1156G12' => 'lonja', 'Lj3A793G39' => 'lonja', 'Lj3C580G2' => 'lonja', 'Lj3C780G2' => 'lonja', 'Lj3C780T4' => 'lonja', 'Lj3C793G9' => 'lonja', 'Lj4g0012960' => 'lja', 'Lj5g0021252' => 'lja', 'Lj5g0021484' => 'lja', 'Lj5g0024528' => 'lja', 'Lj6A399T12' => 'lonja', 'Lj6A656G65' => 'lonja', 'Lsat_1_v5_gn_3_125500' => 'lsa', 'Lsat_1_v5_gn_3_125540' => 'lsa', 'Lsat_1_v5_gn_5_72701' => 'lsa', 'Lsat_1_v5_gn_8_91560' => 'lsa', 'Lsat_1_v5_gn_9_9640' => 'lsa', 'Manes.01G200600' => 'mes', 'Manes.01G200700' => 'mes', 'Manes.03G168900' => 'mes', 'Manes.03G169000' => 'mes', 'Manes.05G085801' => 'mes', 'Manes.05G086200' => 'mes', 'Manes.15G036700' => 'mes', 'Manes.15G036900' => 'mes', 'Mapoly0004s0172' => 'mpo', 'Mapoly0023s0001' => 'mpo', 'Mapoly0142s0012' => 'mpo', 'MBI01_g32854_MAGBIO' => 'mbi', 'MBI11_g24427_MAGBIO' => 'mbi', 'MBI11_g47319_MAGBIO' => 'mbi', 'MCO01G433' => 'mco', 'MD00G1187800' => 'mdo', 'MD04G1226500' => 'mdo', 'MD05G1203900' => 'mdo', 'MD10G1191100' => 'mdo', 'MD12G1243500' => 'mdo', 'MD13G1207000' => 'mdo', 'MD13G1207100' => 'mdo', 'MD16G1208600' => 'mdo', 'Medtr1g050352' => 'mtr', 'Medtr1g070385' => 'mtr', 'Medtr1g070450' => 'mtr', 'Medtr1g075200' => 'mtr', 'Medtr1g075250' => 'mtr', 'Medtr1g075260' => 'mtr', 'Medtr1g475250' => 'mtr', 'Medtr4g075450' => 'mtr', 'Medtr7g096300' => 'mtr', 'Medtr8g105110' => 'mtr', 'MELO3C006470.2' => 'cme', 'MELO3C006471.2' => 'cme', 'MELO3C020772.2' => 'cme', 'MELO3C026780.2' => 'cme', 'MELO3C026781.2' => 'cme', 'Migut.D00390' => 'egut', 'Migut.G00435' => 'egut', 'Migut.G00436' => 'egut', 'Migut.G00718' => 'egut', 'MSTRG.21891' => 'ama', 'MSTRG.26910' => 'ama', 'MSTRG.4099' => 'ama', 'MSTRG.9925' => 'ama', 'Nitab4.5_0000165g0010' => 'nta', 'Nitab4.5_0000209g0180' => 'nta', 'Nitab4.5_0000244g0440' => 'nta', 'Nitab4.5_0000525g0220' => 'nta', 'Nitab4.5_0001597g0020' => 'nta', 'Nitab4.5_0001878g0040' => 'nta', 'Nitab4.5_0001878g0060' => 'nta', 'Nitab4.5_0002838g0100' => 'nta', 'Nitab4.5_0002838g0120' => 'nta', 'Nitab4.5_0004798g0030' => 'nta', 'Nitab4.5_0005420g0010' => 'nta', 'Nitab4.5_0005507g0010' => 'nta', 'Nitab4.5_0005574g0020' => 'nta', 'Nitab4.5_0005838g0010' => 'nta', 'Nitab4.5_0010580g0020' => 'nta', 'Nn1g02599' => 'nnu', 'Nn1g02608' => 'nnu', 'Nn3g17742' => 'nnu', 'Nn3g19534' => 'nnu', 'Nn3g19535' => 'nnu', 'Oeu008790.1' => 'oeu', 'Oeu008792.1' => 'oeu', 'Oeu032590.1' => 'oeu', 'Oeu035349.1' => 'oeu', 'Oeu049791.1' => 'oeu', 'Os01g0774500' => 'osa', 'Os03g0628800' => 'osa', 'Os03g0798600' => 'osa', 'Os05g0508800' => 'osa', 'Peaxi162Scf00036g02018' => 'pax', 'Peaxi162Scf00578g00032' => 'pax', 'Peaxi162Scf00578g00317' => 'pax', 'Peaxi162Scf00785g00114' => 'pax', 'Peaxi162Scf00813g00119' => 'pax', 'Peaxi162Scf00906g00227' => 'pax', 'PGR004G0875' => 'pgr', 'PGR004G2424' => 'pgr', 'PGR031G1239' => 'pgr', 'PGR031G2474' => 'pgr', 'PGR044G0423' => 'pgr', 'PGSC0003DMG400001128' => 'stu', 'PGSC0003DMG400007336' => 'stu', 'PGSC0003DMG400016318' => 'stu', 'PGSC0003DMG400016319' => 'stu', 'PGSC0003DMG400018074' => 'stu', 'Phvul.001G157700' => 'pvu', 'Phvul.002G148550' => 'pvu', 'Phvul.002G320200' => 'pvu', 'Phvul.003G089200' => 'pvu', 'Phvul.007G126000' => 'pvu', 'Phvul.007G126100' => 'pvu', 'Phvul.007G178000' => 'pvu', 'Phvul.007G178200' => 'pvu', 'Potri.002G043000' => 'ptr', 'Potri.002G043200' => 'ptr', 'Potri.003G123750' => 'ptr', 'Potri.005G055401' => 'ptr', 'Potri.005G219700' => 'ptr', 'Potri.005G220000' => 'ptr', 'Potri.008G161901' => 'ptr', 'Potri.008G162000' => 'ptr', 'Potri.008G162400' => 'ptr', 'Potri.010G076900' => 'ptr', 'Pp3c12_9180' => 'ppa', 'Pp3c13_19770' => 'ppa', 'Pp3c14_22950' => 'ppa', 'Pp3c16_12160' => 'ppa', 'Pp3c27_7820' => 'ppa', 'Pp3c2_3490' => 'ppa', 'Pp3c3_23700' => 'ppa', 'Pp3c3_36520' => 'ppa', 'Pp3c4_15250' => 'ppa', 'PRCOL_00007002' => 'pco', 'Prupe.1G030600' => 'ppe', 'Prupe.1G030700' => 'ppe', 'Prupe.6G345200' => 'ppe', 'Prupe.8G230300' => 'ppe', 'Prupe.8G230500' => 'ppe', 'Psat3g059600' => 'psa', 'Psat5g200920' => 'psa', 'Psat6g056440' => 'psa', 'Psat6g057360' => 'psa', 'Psat6g134120' => 'psa', 'Psat6g134160' => 'psa', 'Psat7g008640' => 'psa', 'Psat7g185240' => 'psa', 'PSO017G1330' => 'pso', 'PSO063G6097' => 'pso', 'PSO170G0835' => 'pso', 'PSO170G2499' => 'pso', 'PSO210G5058' => 'pso', 'PSO210G6154' => 'pso', 'PSO585G0031' => 'pso', 'PSO832G0264' => 'pso', 'PSO832G4288' => 'pso', 'QL03p027355' => 'qlo', 'QL03p027430' => 'qlo', 'QL04p081380' => 'qlo', 'QL06p015642' => 'qlo', 'QL06p015650' => 'qlo', 'QL06p015686' => 'qlo', 'QL12p042927' => 'qlo', 'QL93p1863_0035' => 'qlo', 'RcHm_v2.0_Chr3g0450581' => 'rch', 'RcHm_v2.0_Chr4g0390371' => 'rch', 'RcHm_v2.0_Chr4g0390381' => 'rch', 'RcHm_v2.0_Chr4g0390491' => 'rch', 'RcHm_v2.0_Chr4g0390501' => 'rch', 'RcHm_v2.0_Chr6g0289231' => 'rch', 'Rhsim04G0190400' => 'rsi', 'Rhsim04G0190500' => 'rsi', 'Rhsim04G0190600' => 'rsi', 'Rhsim13G0031400' => 'rsi', 'Rhsim13G0165600' => 'rsi', 'RhsimUnG0114600' => 'rsi', 'RhsimUnG0114700' => 'rsi', 'Sabra02G0034800' => 'sbr', 'Sabra02G0035100' => 'sbr', 'Sabra05G0168600' => 'sbr', 'Sabra05G0168800' => 'sbr', 'Sabra08G0123700' => 'sbr', 'Sabra10G0031900' => 'sbr', 'Sabra13G0039000' => 'sbr', 'SalBow2G0782' => 'sbo', 'SalBow2G1403' => 'sbo', 'SalBow4G0074' => 'sbo', 'SalBow4G2635' => 'sbo', 'SalBow5G3010' => 'sbo', 'Sc05g0000870' => 'sci', 'Sc05g0000890' => 'sci', 'Sc13g0005000' => 'sci', 'Sc13g0005030' => 'sci', 'Sc19g0003790' => 'sci', 'Sc19g0003800' => 'sci', 'Sed0003467' => 'sed', 'Sed0009355' => 'sed', 'Sed0009894' => 'sed', 'Sed0011972' => 'sed', 'Sed0021483' => 'sed', 'Sed0021750' => 'sed', 'Sed0026279' => 'sed', 'SEGI_05312' => 'sgi', 'SEGI_10112' => 'sgi', 'SEGI_15835' => 'sgi', 'SEGI_30386' => 'sgi', 'SEGI_34122' => 'sgi', 'SEGI_35063' => 'sgi', 'SGA_v2.0_scaffold101G29794' => 'sas', 'SGA_v2.0_scaffold1G00573' => 'sas', 'SGA_v2.0_scaffold79G25637' => 'sas', 'SGA_v2.0_scaffold88G27283' => 'sas', 'SGA_v2.0_scaffold88G27285' => 'sas', 'SGA_v2.0_scaffold88G27331' => 'sas', 'SHI09937' => 'shi', 'SMO119G0302' => 'smo', 'SMO137G0231' => 'smo', 'SMO367G1151' => 'smo', 'Solyc02g082000.3' => 'sly', 'Solyc06g031670.3' => 'sly', 'Solyc06g053810.3' => 'sly', 'Solyc07g025457.1' => 'sly', 'Solyc08g059740.1' => 'sly', 'Solyc08g059750.3' => 'sly', 'Solyc09g083370.3' => 'sly', 'Solyc12g038950.3' => 'sly', 'Sopen02g026630' => 'spe', 'Sopen06g018930' => 'spe', 'Sopen06g018940' => 'spe', 'Sopen08g009460' => 'spe', 'Sopen09g032290' => 'spe', 'Sp1g03080' => 'spa', 'Sp1g03090' => 'spa', 'Sp1g05480' => 'spa', 'Sp2g07860' => 'spa', 'Sp2g08430' => 'spa', 'Sp2g08440' => 'spa', 'Sp2g26200' => 'spa', 'Sp4g13170' => 'spa', 'Sp6g33840' => 'spa', 'SpUn1204_0010' => 'spa', 'TAR365G0908' => 'tar', 'TAR381G1270' => 'tar', 'TAR381G1651' => 'tar', 'TAR625G1131' => 'tar', 'TAR633G0962' => 'tar', 'TAR633G1729' => 'tar', 'TAR633G1864' => 'tar', 'TAR636G0221' => 'tar', 'TAR636G0314' => 'tar', 'TAR636G3202' => 'tar', 'THA.LOC104800805' => 'tha', 'THA.LOC104801096' => 'tha', 'THA.LOC104801555' => 'tha', 'THA.LOC104808491' => 'tha', 'THA.LOC104808595' => 'tha', 'THA.LOC104815985' => 'tha', 'THA.LOC104822250' => 'tha', 'THA.LOC104826071' => 'tha', 'Thecc.01G265200' => 'tca', 'Thecc.01G265300' => 'tca', 'Thecc.01G265700' => 'tca', 'Thecc.03G109100' => 'tca', 'Thecc.04G245900' => 'tca', 'Thecc.04G246000' => 'tca', 'Thhalv10003334m.g' => 'esa', 'Thhalv10005508m.g' => 'esa', 'Thhalv10005643m.g' => 'esa', 'Thhalv10007316m.g' => 'esa', 'Thhalv10009006m.g' => 'esa', 'Thhalv10009309m.g' => 'esa', 'Thhalv10014917m.g' => 'esa', 'Thhalv10014919m.g' => 'esa', 'Thhalv10015393m.g' => 'esa', 'Thhalv10016515m.g' => 'esa', 'Thhalv10029242m.g' => 'esa', 'TPR.G16654' => 'tpr', 'TPR.G20589' => 'tpr', 'TPR.G23029' => 'tpr', 'TPR.G27731' => 'tpr', 'TPR.G28889' => 'tpr', 'TPR.G28899' => 'tpr', 'TPR.G30846' => 'tpr', 'TPR.G5452' => 'tpr', 'TPR.G5713' => 'tpr', 'TPR.G9046' => 'tpr', 'TPR.G9061' => 'tpr', 'TWI09G1075' => 'twi', 'TWI12G0806' => 'twi', 'TWI18G0108' => 'twi', 'TWI53G1361' => 'twi', 'TWI73G0185' => 'twi', 'TWI73G0427' => 'twi', 'unitig_37.g12001' => 'ugi', 'unitig_747.g21660' => 'ugi', 'unitig_748.g7232' => 'ugi', 'unitig_748.g7315' => 'ugi', 'unitig_85.g27262' => 'ugi', 'unitig_92.g28220' => 'ugi', 'vmacro02632' => 'vma', 'vmacro08410' => 'vma', 'vmacro08411' => 'vma', 'vmacro15407' => 'vma', 'VMungo0251G3619' => 'vmu', 'VMungo0720G1204' => 'vmu', 'VMungo0720G1918' => 'vmu', 'VMungo0720G2387' => 'vmu', 'VMungo0720G2961' => 'vmu', 'VMungo1215G2154' => 'vmu', 'VMungo1383G2411' => 'vmu', 'Zm00001eb051130' => 'zma', 'Zm00001eb116830' => 'zma', 'Zm00001eb116850' => 'zma', 'Zm00001eb151740' => 'zma', 'Zm00001eb292360' => 'zma', 'Zm00001eb301640' => 'zma' ) $gf_id = 'HOM05D000856' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000856' ) $data_identifier = 'HOM05D000856' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 13, 'ath' => (int) 10, 'atr' => (int) 1, 'acertr' => (int) 8, 'cqu' => (int) 6, 'bca' => (int) 21, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 11, 'car' => (int) 9, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 8, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 5, 'fan' => (int) 16, 'fve' => (int) 6, 'gma' => (int) 11, 'ghi' => (int) 19, 'gra' => (int) 9, 'vvi' => (int) 7, 'han' => (int) 17, 'cav' => (int) 5, 'hma' => (int) 2, 'vpl' => (int) 2, 'sun' => (int) 7, 'lal' => (int) 9, 'lja' => (int) 5, 'lonja' => (int) 9, 'lsa' => (int) 5, 'mes' => (int) 8, 'mpo' => (int) 3, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 10, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 15, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 9, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 9, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 6, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 5, 'spa' => (int) 10, 'tar' => (int) 10, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 11, 'tpr' => (int) 11, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 4, 'vmu' => (int) 7, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb301640' $species_info = array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ) $local_species = 'mtr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000856', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p00010' => 'bna', 'A03p04160' => 'bna', 'A03p17160' => 'bna', 'A04p23370' => 'bna', 'A05p14860' => 'bna', 'A08p37020' => 'bna', 'A09p08050' => 'bna', 'A09p66800' => 'bna', 'A09p67940' => 'bna', 'A10p02680' => 'bna', 'A10p05320' => 'bna', 'Aa31LG1G20560' => 'aar', 'Aa31LG1G20610' => 'aar', 'Aa31LG1G7810' => 'aar', 'Aa31LG5G3590' => 'aar', 'Aa31LG5G6140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3819' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4683' => 'aag', 'Actinidia04480' => 'ach', 'Actinidia05466' => 'ach', 'Actinidia08445' => 'ach', 'Actinidia21170' => 'ach', 'Actinidia24812' => 'ach', 'Actinidia24951' => 'ach', 'Actinidia40088' => 'ach', 'Ah.02g111660' => 'amhyb', 'Ah.11g048900' => 'amhyb', 'Ah.11g049910' => 'amhyb', 'AL1G13870' => 'aly', 'AL1G13880' => 'aly', 'AL1G16760' => 'aly', 'AL390U10020' => 'aly', 'AL4G25520' => 'aly', 'AL6G19890' => 'aly', 'AL6G19900' => 'aly', 'AL6G19910' => 'aly', 'AL8G40100' => 'aly', 'Aqoxy2G03562' => 'aox', 'Aqoxy5G00316' => 'aox', 'Aqoxy5G00926' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1628KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1H403S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2FU6SJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.882I6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8YRY2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YN1SN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AF70II' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZA8L1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F916KL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHRD8H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KTZ8QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S22EMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8M29T' => 'arhy', 'AT1G04270' => 'ath', 'AT1G04280' => 'ath', 'AT1G06750' => 'ath', 'AT1G33850' => 'ath', 'AT2G30630' => 'ath', 'AT5G09490' => 'ath', 'AT5G09500' => 'ath', 'AT5G09510' => 'ath', 'AT5G43640' => 'ath', 'AT5G63070' => 'ath', 'ATR0605G315' => 'atr', 'Atru.chr11.175' => 'acertr', 'Atru.chr11.653' => 'acertr', 'Atru.chr3.1616' => 'acertr', 'Atru.chr4.2230' => 'acertr', 'Atru.chr4.2232' => 'acertr', 'Atru.chr5.1598' => 'acertr', 'Atru.chr5.1600' => 'acertr', 'Atru.chr5.2188' => 'acertr', 'AUR62008326' => 'cqu', 'AUR62011922' => 'cqu', 'AUR62011924' => 'cqu', 'AUR62021771' => 'cqu', 'AUR62032237' => 'cqu', 'AUR62032240' => 'cqu', 'BcaB01g05572' => 'bca', 'BcaB02g10337' => 'bca', 'BcaB04g19944' => 'bca', 'BcaB05g21548' => 'bca', 'BcaB05g21549' => 'bca', 'BcaB05g23227' => 'bca', 'BcaB06g26256' => 'bca', 'BcaB06g26257' => 'bca', 'BcaB06g28379' => 'bca', 'BcaC02g11159' => 'bca', 'BcaC03g13258' => 'bca', 'BcaC03g13259' => 'bca', 'BcaC05g24456' => 'bca', 'BcaC05g24457' => 'bca', 'BcaC07g36922' => 'bca', 'BcaC07g36923' => 'bca', 'BcaC07g42050' => 'bca', 'BcaC07g42176' => 'bca', 'BcaC07g42195' => 'bca', 'BcaC07g42196' => 'bca', 'BcaNung06674' => 'bca', 'BolC2t06351H' => 'bol', 'BolC2t06352H' => 'bol', 'BolC3t12993H' => 'bol', 'BolC4t23525H' => 'bol', 'BolC4t27475H' => 'bol', 'BolC5t29025H' => 'bol', 'BolC5t29026H' => 'bol', 'BolC8t46898H' => 'bol', 'BolC8t46899H' => 'bol', 'BolC8t52630H' => 'bol', 'BolC8t52765H' => 'bol', 'BolC9t53824H' => 'bol', 'BraA03t09760Z' => 'bra', 'BraA03t10990Z' => 'bra', 'BraA05t20413Z' => 'bra', 'BraA08t35602Z' => 'bra', 'BraA09t36458Z' => 'bra', 'BraA09t42018Z' => 'bra', 'BraA09t42129Z' => 'bra', 'BraA10t42536Z' => 'bra', 'BraA10t42537Z' => 'bra', 'C01p10690' => 'bna', 'C02p03890' => 'bna', 'C02p03900' => 'bna', 'C03p04620' => 'bna', 'C04p19870' => 'bna', 'C04p59670' => 'bna', 'C05p02460' => 'bna', 'C05p02470' => 'bna', 'C08p00980' => 'bna', 'C08p00990' => 'bna', 'C08p51030' => 'bna', 'C08p52360' => 'bna', 'C09p09120' => 'bna', 'CAN.G19.15' => 'can', 'CAN.G251.10' => 'can', 'CAN.G251.9' => 'can', 'CAN.G398.24' => 'can', 'CAN.G410.32' => 'can', 'CAN.G881.2' => 'can', 'CANSAT01G3025' => 'cansat', 'CANSAT78G1211' => 'cansat', 'CANSAT78G1218' => 'cansat', 'CANSAT78G1521' => 'cansat', 'CANSAT78G1670' => 'cansat', 'CARHR003600' => 'chi', 'CARHR003610' => 'chi', 'CARHR006290' => 'chi', 'CARHR006430' => 'chi', 'CARHR124110' => 'chi', 'CARHR203870' => 'chi', 'CARHR203880' => 'chi', 'CARHR203890' => 'chi', 'CARHR276880' => 'chi', 'Carub.0001s0346' => 'cru', 'Carub.0001s0347' => 'cru', 'Carub.0001s0607' => 'cru', 'Carub.0003s2768' => 'cru', 'Carub.0003s2769' => 'cru', 'Carub.0004s1178' => 'cru', 'Carub.0006s0806' => 'cru', 'Carub.0006s0807' => 'cru', 'Carub.0006s0808' => 'cru', 'Carub.0008s0501' => 'cru', 'Carub.0008s2379' => 'cru', 'Ca_08655_v3' => 'car', 'Ca_08922_v3' => 'car', 'Ca_08923_v3' => 'car', 'Ca_09119_v3' => 'car', 'Ca_09703_v3' => 'car', 'Ca_09705_v3' => 'car', 'Ca_09835_v3' => 'car', 'Ca_26403_v3' => 'car', 'Ca_30719_v3' => 'car', 'CBR_g17958' => 'cbr', 'CBR_g40516' => 'cbr', 'Cc00_g05350' => 'ccan', 'Cc01_g18690' => 'ccan', 'Cc03_g04830' => 'ccan', 'Cc03_g04850' => 'ccan', 'CDE02G4469' => 'cde', 'CDE06G0883' => 'cde', 'CDE06G1295' => 'cde', 'CDE06G1390' => 'cde', 'CDE07G0584' => 'cde', 'CDE07G1084' => 'cde', 'CDE08G1259' => 'cde', 'Cfa002341' => 'cfa', 'Cfa024337' => 'cfa', 'Ciclev10004749m.g' => 'ccl', 'Ciclev10006127m.g' => 'ccl', 'Ciclev10019720m.g' => 'ccl', 'Ciclev10022652m.g' => 'ccl', 'CiPaw.01G190400' => 'cil', 'CiPaw.01G190500' => 'cil', 'CiPaw.02G116400' => 'cil', 'CiPaw.02G116500' => 'cil', 'CiPaw.04G183000' => 'cil', 'CiPaw.04G183300' => 'cil', 'ClCG05G004610' => 'cla', 'ClCG05G004620' => 'cla', 'ClCG06G006730' => 'cla', 'ClCG06G006740' => 'cla', 'ClCG11G003690' => 'cla', 'COL.COLO4_08276' => 'col', 'COL.COLO4_08277' => 'col', 'COL.COLO4_15787' => 'col', 'COL.COLO4_15789' => 'col', 'Cpa.g.c44815' => 'cpa', 'Cpa.g.sc52.144' => 'cpa', 'Cpa.g.sc58.46' => 'cpa', 'Cpa.g.sc58.47' => 'cpa', 'Cre08.g360900' => 'cre', 'CsaV3_2G013030' => 'csa', 'CsaV3_2G013050' => 'csa', 'CsaV3_2G015620' => 'csa', 'CsaV3_3G012590' => 'csa', 'CsaV3_3G012600' => 'csa', 'CSS0001641' => 'camsi', 'CSS0008310' => 'camsi', 'CSS0013011' => 'camsi', 'CSS0017147' => 'camsi', 'CSS0022970' => 'camsi', 'CSS0025655' => 'camsi', 'CSS0028665' => 'camsi', 'CSS0029117' => 'camsi', 'CSS0032024' => 'camsi', 'CSS0039681' => 'camsi', 'CSS0046516' => 'camsi', 'CSS0050307' => 'camsi', 'DCAR_005871' => 'dca', 'DCAR_007342' => 'dca', 'DCAR_024228' => 'dca', 'DCAR_027277' => 'dca', 'DCAR_030718' => 'dca', 'Dinv20287' => 'din', 'Dinv22461' => 'din', 'Dinv22464' => 'din', 'Dinv29912' => 'din', 'Dinv29913' => 'din', 'Dinv34580' => 'din', 'Dinv34582' => 'din', 'Dinv44632' => 'din', 'Duzib052G0266' => 'dzi', 'Duzib133G0907' => 'dzi', 'Duzib133G1034' => 'dzi', 'Duzib138G0207' => 'dzi', 'Duzib138G0491' => 'dzi', 'Duzib151G0812' => 'dzi', 'Duzib151G1166' => 'dzi', 'Duzib168G0192' => 'dzi', 'Duzib211G0077' => 'dzi', 'Duzib212G0429' => 'dzi', 'Duzib212G0472' => 'dzi', 'ECA233G2617' => 'eca', 'ECA236G4188' => 'eca', 'ECA240G0936' => 'eca', 'ECA240G1129' => 'eca', 'ECA247G0623' => 'eca', 'EL10Ac5g10451' => 'bvu', 'EL10Ac5g10453' => 'bvu', 'EL10Ac5g10894' => 'bvu', 'Eucgr.H00192' => 'egr', 'Eucgr.H00193' => 'egr', 'Eucgr.H00194' => 'egr', 'Eucgr.J01562' => 'egr', 'Eucgr.K03301' => 'egr', 'FAN02G0632' => 'fan', 'FAN05G5378' => 'fan', 'FAN09G3247' => 'fan', 'FAN12G0435' => 'fan', 'FAN12G2426' => 'fan', 'FAN14G1707' => 'fan', 'FAN14G4725' => 'fan', 'FAN15G2071' => 'fan', 'FAN17G3065' => 'fan', 'FAN19G1376' => 'fan', 'FAN20G0354' => 'fan', 'FAN20G2429' => 'fan', 'FAN20G2658' => 'fan', 'FAN24G2343' => 'fan', 'FAN27G2362' => 'fan', 'FAN28G1765' => 'fan', 'FvH4_1g16020' => 'fve', 'FvH4_2g04890' => 'fve', 'FvH4_2g22270' => 'fve', 'FvH4_4g02630' => 'fve', 'FvH4_4g02640' => 'fve', 'FvH4_6g02650' => 'fve', 'Glyma.02G140600' => 'gma', 'Glyma.03G159900' => 'gma', 'Glyma.05G234800' => 'gma', 'Glyma.07G269600' => 'gma', 'Glyma.08G042300' => 'gma', 'Glyma.10G033500' => 'gma', 'Glyma.10G185200' => 'gma', 'Glyma.17G004300' => 'gma', 'Glyma.19G161900' => 'gma', 'Glyma.20G205100' => 'gma', 'Glyma.20G205200' => 'gma', 'Gohir.A01G139101' => 'ghi', 'Gohir.A02G035600' => 'ghi', 'Gohir.A02G117901' => 'ghi', 'Gohir.A07G210100' => 'ghi', 'Gohir.A07G210200' => 'ghi', 'Gohir.A08G061100' => 'ghi', 'Gohir.A09G223000' => 'ghi', 'Gohir.A09G223100' => 'ghi', 'Gohir.A10G113900' => 'ghi', 'Gohir.A10G114000' => 'ghi', 'Gohir.D02G042300' => 'ghi', 'Gohir.D07G216100' => 'ghi', 'Gohir.D07G216200' => 'ghi', 'Gohir.D08G070400' => 'ghi', 'Gohir.D09G225000' => 'ghi', 'Gohir.D09G225100' => 'ghi', 'Gohir.D10G152300' => 'ghi', 'Gohir.D10G153200' => 'ghi', 'Gohir.D11G133701' => 'ghi', 'Gorai.004G074100' => 'gra', 'Gorai.005G046800' => 'gra', 'Gorai.006G246500' => 'gra', 'Gorai.006G246600' => 'gra', 'Gorai.007G142900' => 'gra', 'Gorai.011G171000' => 'gra', 'Gorai.011G171100' => 'gra', 'Gorai.013G104300' => 'gra', 'Gorai.013G104400' => 'gra', 'GSVIVG01000754001' => 'vvi', 'GSVIVG01000756001' => 'vvi', 'GSVIVG01010903001' => 'vvi', 'GSVIVG01017623001' => 'vvi', 'GSVIVG01018113001' => 'vvi', 'GSVIVG01018116001' => 'vvi', 'GSVIVG01018118001' => 'vvi', 'HanXRQChr03g0076211' => 'han', 'HanXRQChr03g0092431' => 'han', 'HanXRQChr03g0092441' => 'han', 'HanXRQChr03g0092591' => 'han', 'HanXRQChr03g0092671' => 'han', 'HanXRQChr03g0092681' => 'han', 'HanXRQChr03g0092691' => 'han', 'HanXRQChr03g0092701' => 'han', 'HanXRQChr03g0092721' => 'han', 'HanXRQChr03g0092731' => 'han', 'HanXRQChr04g0113681' => 'han', 'HanXRQChr10g0281371' => 'han', 'HanXRQChr11g0337141' => 'han', 'HanXRQChr13g0424521' => 'han', 'HanXRQChr13g0424531' => 'han', 'HanXRQChr13g0424541' => 'han', 'HanXRQChr16g0498221' => 'han', 'Haze_04377' => 'cav', 'Haze_11298' => 'cav', 'Haze_24547' => 'cav', 'Haze_24550' => 'cav', 'Haze_26587' => 'cav', 'Hma1.2p1_0650F.1_g195410' => 'hma', 'Hma1.2p1_0893F.1_g233470' => 'hma', 'HPP92_006508' => 'vpl', 'HPP92_024780' => 'vpl', 'Hund02688' => 'sun', 'Hund09380' => 'sun', 'Hund09381' => 'sun', 'Hund09832' => 'sun', 'Hund09833' => 'sun', 'Hund11351' => 'sun', 'Hund11513' => 'sun', 'Lalb_Chr06g0162591' => 'lal', 'Lalb_Chr06g0162601' => 'lal', 'Lalb_Chr06g0169321' => 'lal', 'Lalb_Chr09g0330951' => 'lal', 'Lalb_Chr16g0387631' => 'lal', 'Lalb_Chr21g0306241' => 'lal', 'Lalb_Chr25g0290051' => 'lal', 'Lalb_Chr25g0290061' => 'lal', 'Lalb_Chr25g0290071' => 'lal', 'Lj1g0003876' => 'lja', 'Lj1P1207T36' => 'lonja', 'Lj2C1156G12' => 'lonja', 'Lj3A793G39' => 'lonja', 'Lj3C580G2' => 'lonja', 'Lj3C780G2' => 'lonja', 'Lj3C780T4' => 'lonja', 'Lj3C793G9' => 'lonja', 'Lj4g0012960' => 'lja', 'Lj5g0021252' => 'lja', 'Lj5g0021484' => 'lja', 'Lj5g0024528' => 'lja', 'Lj6A399T12' => 'lonja', 'Lj6A656G65' => 'lonja', 'Lsat_1_v5_gn_3_125500' => 'lsa', 'Lsat_1_v5_gn_3_125540' => 'lsa', 'Lsat_1_v5_gn_5_72701' => 'lsa', 'Lsat_1_v5_gn_8_91560' => 'lsa', 'Lsat_1_v5_gn_9_9640' => 'lsa', 'Manes.01G200600' => 'mes', 'Manes.01G200700' => 'mes', 'Manes.03G168900' => 'mes', 'Manes.03G169000' => 'mes', 'Manes.05G085801' => 'mes', 'Manes.05G086200' => 'mes', 'Manes.15G036700' => 'mes', 'Manes.15G036900' => 'mes', 'Mapoly0004s0172' => 'mpo', 'Mapoly0023s0001' => 'mpo', 'Mapoly0142s0012' => 'mpo', 'MBI01_g32854_MAGBIO' => 'mbi', 'MBI11_g24427_MAGBIO' => 'mbi', 'MBI11_g47319_MAGBIO' => 'mbi', 'MCO01G433' => 'mco', 'MD00G1187800' => 'mdo', 'MD04G1226500' => 'mdo', 'MD05G1203900' => 'mdo', 'MD10G1191100' => 'mdo', 'MD12G1243500' => 'mdo', 'MD13G1207000' => 'mdo', 'MD13G1207100' => 'mdo', 'MD16G1208600' => 'mdo', 'Medtr1g050352' => 'mtr', 'Medtr1g070385' => 'mtr', 'Medtr1g070450' => 'mtr', 'Medtr1g075200' => 'mtr', 'Medtr1g075250' => 'mtr', 'Medtr1g075260' => 'mtr', 'Medtr1g475250' => 'mtr', 'Medtr4g075450' => 'mtr', 'Medtr7g096300' => 'mtr', 'Medtr8g105110' => 'mtr', 'MELO3C006470.2' => 'cme', 'MELO3C006471.2' => 'cme', 'MELO3C020772.2' => 'cme', 'MELO3C026780.2' => 'cme', 'MELO3C026781.2' => 'cme', 'Migut.D00390' => 'egut', 'Migut.G00435' => 'egut', 'Migut.G00436' => 'egut', 'Migut.G00718' => 'egut', 'MSTRG.21891' => 'ama', 'MSTRG.26910' => 'ama', 'MSTRG.4099' => 'ama', 'MSTRG.9925' => 'ama', 'Nitab4.5_0000165g0010' => 'nta', 'Nitab4.5_0000209g0180' => 'nta', 'Nitab4.5_0000244g0440' => 'nta', 'Nitab4.5_0000525g0220' => 'nta', 'Nitab4.5_0001597g0020' => 'nta', 'Nitab4.5_0001878g0040' => 'nta', 'Nitab4.5_0001878g0060' => 'nta', 'Nitab4.5_0002838g0100' => 'nta', 'Nitab4.5_0002838g0120' => 'nta', 'Nitab4.5_0004798g0030' => 'nta', 'Nitab4.5_0005420g0010' => 'nta', 'Nitab4.5_0005507g0010' => 'nta', 'Nitab4.5_0005574g0020' => 'nta', 'Nitab4.5_0005838g0010' => 'nta', 'Nitab4.5_0010580g0020' => 'nta', 'Nn1g02599' => 'nnu', 'Nn1g02608' => 'nnu', 'Nn3g17742' => 'nnu', 'Nn3g19534' => 'nnu', 'Nn3g19535' => 'nnu', 'Oeu008790.1' => 'oeu', 'Oeu008792.1' => 'oeu', 'Oeu032590.1' => 'oeu', 'Oeu035349.1' => 'oeu', 'Oeu049791.1' => 'oeu', 'Os01g0774500' => 'osa', 'Os03g0628800' => 'osa', 'Os03g0798600' => 'osa', 'Os05g0508800' => 'osa', 'Peaxi162Scf00036g02018' => 'pax', 'Peaxi162Scf00578g00032' => 'pax', 'Peaxi162Scf00578g00317' => 'pax', 'Peaxi162Scf00785g00114' => 'pax', 'Peaxi162Scf00813g00119' => 'pax', 'Peaxi162Scf00906g00227' => 'pax', 'PGR004G0875' => 'pgr', 'PGR004G2424' => 'pgr', 'PGR031G1239' => 'pgr', 'PGR031G2474' => 'pgr', 'PGR044G0423' => 'pgr', 'PGSC0003DMG400001128' => 'stu', 'PGSC0003DMG400007336' => 'stu', 'PGSC0003DMG400016318' => 'stu', 'PGSC0003DMG400016319' => 'stu', 'PGSC0003DMG400018074' => 'stu', 'Phvul.001G157700' => 'pvu', 'Phvul.002G148550' => 'pvu', 'Phvul.002G320200' => 'pvu', 'Phvul.003G089200' => 'pvu', 'Phvul.007G126000' => 'pvu', 'Phvul.007G126100' => 'pvu', 'Phvul.007G178000' => 'pvu', 'Phvul.007G178200' => 'pvu', 'Potri.002G043000' => 'ptr', 'Potri.002G043200' => 'ptr', 'Potri.003G123750' => 'ptr', 'Potri.005G055401' => 'ptr', 'Potri.005G219700' => 'ptr', 'Potri.005G220000' => 'ptr', 'Potri.008G161901' => 'ptr', 'Potri.008G162000' => 'ptr', 'Potri.008G162400' => 'ptr', 'Potri.010G076900' => 'ptr', 'Pp3c12_9180' => 'ppa', 'Pp3c13_19770' => 'ppa', 'Pp3c14_22950' => 'ppa', 'Pp3c16_12160' => 'ppa', 'Pp3c27_7820' => 'ppa', 'Pp3c2_3490' => 'ppa', 'Pp3c3_23700' => 'ppa', 'Pp3c3_36520' => 'ppa', 'Pp3c4_15250' => 'ppa', 'PRCOL_00007002' => 'pco', 'Prupe.1G030600' => 'ppe', 'Prupe.1G030700' => 'ppe', 'Prupe.6G345200' => 'ppe', 'Prupe.8G230300' => 'ppe', 'Prupe.8G230500' => 'ppe', 'Psat3g059600' => 'psa', 'Psat5g200920' => 'psa', 'Psat6g056440' => 'psa', 'Psat6g057360' => 'psa', 'Psat6g134120' => 'psa', 'Psat6g134160' => 'psa', 'Psat7g008640' => 'psa', 'Psat7g185240' => 'psa', 'PSO017G1330' => 'pso', 'PSO063G6097' => 'pso', 'PSO170G0835' => 'pso', 'PSO170G2499' => 'pso', 'PSO210G5058' => 'pso', 'PSO210G6154' => 'pso', 'PSO585G0031' => 'pso', 'PSO832G0264' => 'pso', 'PSO832G4288' => 'pso', 'QL03p027355' => 'qlo', 'QL03p027430' => 'qlo', 'QL04p081380' => 'qlo', 'QL06p015642' => 'qlo', 'QL06p015650' => 'qlo', 'QL06p015686' => 'qlo', 'QL12p042927' => 'qlo', 'QL93p1863_0035' => 'qlo', 'RcHm_v2.0_Chr3g0450581' => 'rch', 'RcHm_v2.0_Chr4g0390371' => 'rch', 'RcHm_v2.0_Chr4g0390381' => 'rch', 'RcHm_v2.0_Chr4g0390491' => 'rch', 'RcHm_v2.0_Chr4g0390501' => 'rch', 'RcHm_v2.0_Chr6g0289231' => 'rch', 'Rhsim04G0190400' => 'rsi', 'Rhsim04G0190500' => 'rsi', 'Rhsim04G0190600' => 'rsi', 'Rhsim13G0031400' => 'rsi', 'Rhsim13G0165600' => 'rsi', 'RhsimUnG0114600' => 'rsi', 'RhsimUnG0114700' => 'rsi', 'Sabra02G0034800' => 'sbr', 'Sabra02G0035100' => 'sbr', 'Sabra05G0168600' => 'sbr', 'Sabra05G0168800' => 'sbr', 'Sabra08G0123700' => 'sbr', 'Sabra10G0031900' => 'sbr', 'Sabra13G0039000' => 'sbr', 'SalBow2G0782' => 'sbo', 'SalBow2G1403' => 'sbo', 'SalBow4G0074' => 'sbo', 'SalBow4G2635' => 'sbo', 'SalBow5G3010' => 'sbo', 'Sc05g0000870' => 'sci', 'Sc05g0000890' => 'sci', 'Sc13g0005000' => 'sci', 'Sc13g0005030' => 'sci', 'Sc19g0003790' => 'sci', 'Sc19g0003800' => 'sci', 'Sed0003467' => 'sed', 'Sed0009355' => 'sed', 'Sed0009894' => 'sed', 'Sed0011972' => 'sed', 'Sed0021483' => 'sed', 'Sed0021750' => 'sed', 'Sed0026279' => 'sed', 'SEGI_05312' => 'sgi', 'SEGI_10112' => 'sgi', 'SEGI_15835' => 'sgi', 'SEGI_30386' => 'sgi', 'SEGI_34122' => 'sgi', 'SEGI_35063' => 'sgi', 'SGA_v2.0_scaffold101G29794' => 'sas', 'SGA_v2.0_scaffold1G00573' => 'sas', 'SGA_v2.0_scaffold79G25637' => 'sas', 'SGA_v2.0_scaffold88G27283' => 'sas', 'SGA_v2.0_scaffold88G27285' => 'sas', 'SGA_v2.0_scaffold88G27331' => 'sas', 'SHI09937' => 'shi', 'SMO119G0302' => 'smo', 'SMO137G0231' => 'smo', 'SMO367G1151' => 'smo', 'Solyc02g082000.3' => 'sly', 'Solyc06g031670.3' => 'sly', 'Solyc06g053810.3' => 'sly', 'Solyc07g025457.1' => 'sly', 'Solyc08g059740.1' => 'sly', 'Solyc08g059750.3' => 'sly', 'Solyc09g083370.3' => 'sly', 'Solyc12g038950.3' => 'sly', 'Sopen02g026630' => 'spe', 'Sopen06g018930' => 'spe', 'Sopen06g018940' => 'spe', 'Sopen08g009460' => 'spe', 'Sopen09g032290' => 'spe', 'Sp1g03080' => 'spa', 'Sp1g03090' => 'spa', 'Sp1g05480' => 'spa', 'Sp2g07860' => 'spa', 'Sp2g08430' => 'spa', 'Sp2g08440' => 'spa', 'Sp2g26200' => 'spa', 'Sp4g13170' => 'spa', 'Sp6g33840' => 'spa', 'SpUn1204_0010' => 'spa', 'TAR365G0908' => 'tar', 'TAR381G1270' => 'tar', 'TAR381G1651' => 'tar', 'TAR625G1131' => 'tar', 'TAR633G0962' => 'tar', 'TAR633G1729' => 'tar', 'TAR633G1864' => 'tar', 'TAR636G0221' => 'tar', 'TAR636G0314' => 'tar', 'TAR636G3202' => 'tar', 'THA.LOC104800805' => 'tha', 'THA.LOC104801096' => 'tha', 'THA.LOC104801555' => 'tha', 'THA.LOC104808491' => 'tha', 'THA.LOC104808595' => 'tha', 'THA.LOC104815985' => 'tha', 'THA.LOC104822250' => 'tha', 'THA.LOC104826071' => 'tha', 'Thecc.01G265200' => 'tca', 'Thecc.01G265300' => 'tca', 'Thecc.01G265700' => 'tca', 'Thecc.03G109100' => 'tca', 'Thecc.04G245900' => 'tca', 'Thecc.04G246000' => 'tca', 'Thhalv10003334m.g' => 'esa', 'Thhalv10005508m.g' => 'esa', 'Thhalv10005643m.g' => 'esa', 'Thhalv10007316m.g' => 'esa', 'Thhalv10009006m.g' => 'esa', 'Thhalv10009309m.g' => 'esa', 'Thhalv10014917m.g' => 'esa', 'Thhalv10014919m.g' => 'esa', 'Thhalv10015393m.g' => 'esa', 'Thhalv10016515m.g' => 'esa', 'Thhalv10029242m.g' => 'esa', 'TPR.G16654' => 'tpr', 'TPR.G20589' => 'tpr', 'TPR.G23029' => 'tpr', 'TPR.G27731' => 'tpr', 'TPR.G28889' => 'tpr', 'TPR.G28899' => 'tpr', 'TPR.G30846' => 'tpr', 'TPR.G5452' => 'tpr', 'TPR.G5713' => 'tpr', 'TPR.G9046' => 'tpr', 'TPR.G9061' => 'tpr', 'TWI09G1075' => 'twi', 'TWI12G0806' => 'twi', 'TWI18G0108' => 'twi', 'TWI53G1361' => 'twi', 'TWI73G0185' => 'twi', 'TWI73G0427' => 'twi', 'unitig_37.g12001' => 'ugi', 'unitig_747.g21660' => 'ugi', 'unitig_748.g7232' => 'ugi', 'unitig_748.g7315' => 'ugi', 'unitig_85.g27262' => 'ugi', 'unitig_92.g28220' => 'ugi', 'vmacro02632' => 'vma', 'vmacro08410' => 'vma', 'vmacro08411' => 'vma', 'vmacro15407' => 'vma', 'VMungo0251G3619' => 'vmu', 'VMungo0720G1204' => 'vmu', 'VMungo0720G1918' => 'vmu', 'VMungo0720G2387' => 'vmu', 'VMungo0720G2961' => 'vmu', 'VMungo1215G2154' => 'vmu', 'VMungo1383G2411' => 'vmu', 'Zm00001eb051130' => 'zma', 'Zm00001eb116830' => 'zma', 'Zm00001eb116850' => 'zma', 'Zm00001eb151740' => 'zma', 'Zm00001eb292360' => 'zma', 'Zm00001eb301640' => 'zma' ), 'gf_id' => 'HOM05D000856', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000856' ), 'data_identifier' => 'HOM05D000856', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000856', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p00010' => 'bna', 'A03p04160' => 'bna', 'A03p17160' => 'bna', 'A04p23370' => 'bna', 'A05p14860' => 'bna', 'A08p37020' => 'bna', 'A09p08050' => 'bna', 'A09p66800' => 'bna', 'A09p67940' => 'bna', 'A10p02680' => 'bna', 'A10p05320' => 'bna', 'Aa31LG1G20560' => 'aar', 'Aa31LG1G20610' => 'aar', 'Aa31LG1G7810' => 'aar', 'Aa31LG5G3590' => 'aar', 'Aa31LG5G6140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3819' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4683' => 'aag', 'Actinidia04480' => 'ach', 'Actinidia05466' => 'ach', 'Actinidia08445' => 'ach', 'Actinidia21170' => 'ach', 'Actinidia24812' => 'ach', 'Actinidia24951' => 'ach', 'Actinidia40088' => 'ach', 'Ah.02g111660' => 'amhyb', 'Ah.11g048900' => 'amhyb', 'Ah.11g049910' => 'amhyb', 'AL1G13870' => 'aly', 'AL1G13880' => 'aly', 'AL1G16760' => 'aly', 'AL390U10020' => 'aly', 'AL4G25520' => 'aly', 'AL6G19890' => 'aly', 'AL6G19900' => 'aly', 'AL6G19910' => 'aly', 'AL8G40100' => 'aly', 'Aqoxy2G03562' => 'aox', 'Aqoxy5G00316' => 'aox', 'Aqoxy5G00926' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1628KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1H403S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2FU6SJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.882I6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8YRY2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YN1SN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AF70II' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZA8L1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F916KL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHRD8H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KTZ8QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S22EMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8M29T' => 'arhy', 'AT1G04270' => 'ath', 'AT1G04280' => 'ath', 'AT1G06750' => 'ath', 'AT1G33850' => 'ath', 'AT2G30630' => 'ath', 'AT5G09490' => 'ath', 'AT5G09500' => 'ath', 'AT5G09510' => 'ath', 'AT5G43640' => 'ath', 'AT5G63070' => 'ath', 'ATR0605G315' => 'atr', 'Atru.chr11.175' => 'acertr', 'Atru.chr11.653' => 'acertr', 'Atru.chr3.1616' => 'acertr', 'Atru.chr4.2230' => 'acertr', 'Atru.chr4.2232' => 'acertr', 'Atru.chr5.1598' => 'acertr', 'Atru.chr5.1600' => 'acertr', 'Atru.chr5.2188' => 'acertr', 'AUR62008326' => 'cqu', 'AUR62011922' => 'cqu', 'AUR62011924' => 'cqu', 'AUR62021771' => 'cqu', 'AUR62032237' => 'cqu', 'AUR62032240' => 'cqu', 'BcaB01g05572' => 'bca', 'BcaB02g10337' => 'bca', 'BcaB04g19944' => 'bca', 'BcaB05g21548' => 'bca', 'BcaB05g21549' => 'bca', 'BcaB05g23227' => 'bca', 'BcaB06g26256' => 'bca', 'BcaB06g26257' => 'bca', 'BcaB06g28379' => 'bca', 'BcaC02g11159' => 'bca', 'BcaC03g13258' => 'bca', 'BcaC03g13259' => 'bca', 'BcaC05g24456' => 'bca', 'BcaC05g24457' => 'bca', 'BcaC07g36922' => 'bca', 'BcaC07g36923' => 'bca', 'BcaC07g42050' => 'bca', 'BcaC07g42176' => 'bca', 'BcaC07g42195' => 'bca', 'BcaC07g42196' => 'bca', 'BcaNung06674' => 'bca', 'BolC2t06351H' => 'bol', 'BolC2t06352H' => 'bol', 'BolC3t12993H' => 'bol', 'BolC4t23525H' => 'bol', 'BolC4t27475H' => 'bol', 'BolC5t29025H' => 'bol', 'BolC5t29026H' => 'bol', 'BolC8t46898H' => 'bol', 'BolC8t46899H' => 'bol', 'BolC8t52630H' => 'bol', 'BolC8t52765H' => 'bol', 'BolC9t53824H' => 'bol', 'BraA03t09760Z' => 'bra', 'BraA03t10990Z' => 'bra', 'BraA05t20413Z' => 'bra', 'BraA08t35602Z' => 'bra', 'BraA09t36458Z' => 'bra', 'BraA09t42018Z' => 'bra', 'BraA09t42129Z' => 'bra', 'BraA10t42536Z' => 'bra', 'BraA10t42537Z' => 'bra', 'C01p10690' => 'bna', 'C02p03890' => 'bna', 'C02p03900' => 'bna', 'C03p04620' => 'bna', 'C04p19870' => 'bna', 'C04p59670' => 'bna', 'C05p02460' => 'bna', 'C05p02470' => 'bna', 'C08p00980' => 'bna', 'C08p00990' => 'bna', 'C08p51030' => 'bna', 'C08p52360' => 'bna', 'C09p09120' => 'bna', 'CAN.G19.15' => 'can', 'CAN.G251.10' => 'can', 'CAN.G251.9' => 'can', 'CAN.G398.24' => 'can', 'CAN.G410.32' => 'can', 'CAN.G881.2' => 'can', 'CANSAT01G3025' => 'cansat', 'CANSAT78G1211' => 'cansat', 'CANSAT78G1218' => 'cansat', 'CANSAT78G1521' => 'cansat', 'CANSAT78G1670' => 'cansat', 'CARHR003600' => 'chi', 'CARHR003610' => 'chi', 'CARHR006290' => 'chi', 'CARHR006430' => 'chi', 'CARHR124110' => 'chi', 'CARHR203870' => 'chi', 'CARHR203880' => 'chi', 'CARHR203890' => 'chi', 'CARHR276880' => 'chi', 'Carub.0001s0346' => 'cru', 'Carub.0001s0347' => 'cru', 'Carub.0001s0607' => 'cru', 'Carub.0003s2768' => 'cru', 'Carub.0003s2769' => 'cru', 'Carub.0004s1178' => 'cru', 'Carub.0006s0806' => 'cru', 'Carub.0006s0807' => 'cru', 'Carub.0006s0808' => 'cru', 'Carub.0008s0501' => 'cru', 'Carub.0008s2379' => 'cru', 'Ca_08655_v3' => 'car', 'Ca_08922_v3' => 'car', 'Ca_08923_v3' => 'car', 'Ca_09119_v3' => 'car', 'Ca_09703_v3' => 'car', 'Ca_09705_v3' => 'car', 'Ca_09835_v3' => 'car', 'Ca_26403_v3' => 'car', 'Ca_30719_v3' => 'car', 'CBR_g17958' => 'cbr', 'CBR_g40516' => 'cbr', 'Cc00_g05350' => 'ccan', 'Cc01_g18690' => 'ccan', 'Cc03_g04830' => 'ccan', 'Cc03_g04850' => 'ccan', 'CDE02G4469' => 'cde', 'CDE06G0883' => 'cde', 'CDE06G1295' => 'cde', 'CDE06G1390' => 'cde', 'CDE07G0584' => 'cde', 'CDE07G1084' => 'cde', 'CDE08G1259' => 'cde', 'Cfa002341' => 'cfa', 'Cfa024337' => 'cfa', 'Ciclev10004749m.g' => 'ccl', 'Ciclev10006127m.g' => 'ccl', 'Ciclev10019720m.g' => 'ccl', 'Ciclev10022652m.g' => 'ccl', 'CiPaw.01G190400' => 'cil', 'CiPaw.01G190500' => 'cil', 'CiPaw.02G116400' => 'cil', 'CiPaw.02G116500' => 'cil', 'CiPaw.04G183000' => 'cil', 'CiPaw.04G183300' => 'cil', 'ClCG05G004610' => 'cla', 'ClCG05G004620' => 'cla', 'ClCG06G006730' => 'cla', 'ClCG06G006740' => 'cla', 'ClCG11G003690' => 'cla', 'COL.COLO4_08276' => 'col', 'COL.COLO4_08277' => 'col', 'COL.COLO4_15787' => 'col', 'COL.COLO4_15789' => 'col', 'Cpa.g.c44815' => 'cpa', 'Cpa.g.sc52.144' => 'cpa', 'Cpa.g.sc58.46' => 'cpa', 'Cpa.g.sc58.47' => 'cpa', 'Cre08.g360900' => 'cre', 'CsaV3_2G013030' => 'csa', 'CsaV3_2G013050' => 'csa', 'CsaV3_2G015620' => 'csa', 'CsaV3_3G012590' => 'csa', 'CsaV3_3G012600' => 'csa', 'CSS0001641' => 'camsi', 'CSS0008310' => 'camsi', 'CSS0013011' => 'camsi', 'CSS0017147' => 'camsi', 'CSS0022970' => 'camsi', 'CSS0025655' => 'camsi', 'CSS0028665' => 'camsi', 'CSS0029117' => 'camsi', 'CSS0032024' => 'camsi', 'CSS0039681' => 'camsi', 'CSS0046516' => 'camsi', 'CSS0050307' => 'camsi', 'DCAR_005871' => 'dca', 'DCAR_007342' => 'dca', 'DCAR_024228' => 'dca', 'DCAR_027277' => 'dca', 'DCAR_030718' => 'dca', 'Dinv20287' => 'din', 'Dinv22461' => 'din', 'Dinv22464' => 'din', 'Dinv29912' => 'din', 'Dinv29913' => 'din', 'Dinv34580' => 'din', 'Dinv34582' => 'din', 'Dinv44632' => 'din', 'Duzib052G0266' => 'dzi', 'Duzib133G0907' => 'dzi', 'Duzib133G1034' => 'dzi', 'Duzib138G0207' => 'dzi', 'Duzib138G0491' => 'dzi', 'Duzib151G0812' => 'dzi', 'Duzib151G1166' => 'dzi', 'Duzib168G0192' => 'dzi', 'Duzib211G0077' => 'dzi', 'Duzib212G0429' => 'dzi', 'Duzib212G0472' => 'dzi', 'ECA233G2617' => 'eca', 'ECA236G4188' => 'eca', 'ECA240G0936' => 'eca', 'ECA240G1129' => 'eca', 'ECA247G0623' => 'eca', 'EL10Ac5g10451' => 'bvu', 'EL10Ac5g10453' => 'bvu', 'EL10Ac5g10894' => 'bvu', 'Eucgr.H00192' => 'egr', 'Eucgr.H00193' => 'egr', 'Eucgr.H00194' => 'egr', 'Eucgr.J01562' => 'egr', 'Eucgr.K03301' => 'egr', 'FAN02G0632' => 'fan', 'FAN05G5378' => 'fan', 'FAN09G3247' => 'fan', 'FAN12G0435' => 'fan', 'FAN12G2426' => 'fan', 'FAN14G1707' => 'fan', 'FAN14G4725' => 'fan', 'FAN15G2071' => 'fan', 'FAN17G3065' => 'fan', 'FAN19G1376' => 'fan', 'FAN20G0354' => 'fan', 'FAN20G2429' => 'fan', 'FAN20G2658' => 'fan', 'FAN24G2343' => 'fan', 'FAN27G2362' => 'fan', 'FAN28G1765' => 'fan', 'FvH4_1g16020' => 'fve', 'FvH4_2g04890' => 'fve', 'FvH4_2g22270' => 'fve', 'FvH4_4g02630' => 'fve', 'FvH4_4g02640' => 'fve', 'FvH4_6g02650' => 'fve', 'Glyma.02G140600' => 'gma', 'Glyma.03G159900' => 'gma', 'Glyma.05G234800' => 'gma', 'Glyma.07G269600' => 'gma', 'Glyma.08G042300' => 'gma', 'Glyma.10G033500' => 'gma', 'Glyma.10G185200' => 'gma', 'Glyma.17G004300' => 'gma', 'Glyma.19G161900' => 'gma', 'Glyma.20G205100' => 'gma', 'Glyma.20G205200' => 'gma', 'Gohir.A01G139101' => 'ghi', 'Gohir.A02G035600' => 'ghi', 'Gohir.A02G117901' => 'ghi', 'Gohir.A07G210100' => 'ghi', 'Gohir.A07G210200' => 'ghi', 'Gohir.A08G061100' => 'ghi', 'Gohir.A09G223000' => 'ghi', 'Gohir.A09G223100' => 'ghi', 'Gohir.A10G113900' => 'ghi', 'Gohir.A10G114000' => 'ghi', 'Gohir.D02G042300' => 'ghi', 'Gohir.D07G216100' => 'ghi', 'Gohir.D07G216200' => 'ghi', 'Gohir.D08G070400' => 'ghi', 'Gohir.D09G225000' => 'ghi', 'Gohir.D09G225100' => 'ghi', 'Gohir.D10G152300' => 'ghi', 'Gohir.D10G153200' => 'ghi', 'Gohir.D11G133701' => 'ghi', 'Gorai.004G074100' => 'gra', 'Gorai.005G046800' => 'gra', 'Gorai.006G246500' => 'gra', 'Gorai.006G246600' => 'gra', 'Gorai.007G142900' => 'gra', 'Gorai.011G171000' => 'gra', 'Gorai.011G171100' => 'gra', 'Gorai.013G104300' => 'gra', 'Gorai.013G104400' => 'gra', 'GSVIVG01000754001' => 'vvi', 'GSVIVG01000756001' => 'vvi', 'GSVIVG01010903001' => 'vvi', 'GSVIVG01017623001' => 'vvi', 'GSVIVG01018113001' => 'vvi', 'GSVIVG01018116001' => 'vvi', 'GSVIVG01018118001' => 'vvi', 'HanXRQChr03g0076211' => 'han', 'HanXRQChr03g0092431' => 'han', 'HanXRQChr03g0092441' => 'han', 'HanXRQChr03g0092591' => 'han', 'HanXRQChr03g0092671' => 'han', 'HanXRQChr03g0092681' => 'han', 'HanXRQChr03g0092691' => 'han', 'HanXRQChr03g0092701' => 'han', 'HanXRQChr03g0092721' => 'han', 'HanXRQChr03g0092731' => 'han', 'HanXRQChr04g0113681' => 'han', 'HanXRQChr10g0281371' => 'han', 'HanXRQChr11g0337141' => 'han', 'HanXRQChr13g0424521' => 'han', 'HanXRQChr13g0424531' => 'han', 'HanXRQChr13g0424541' => 'han', 'HanXRQChr16g0498221' => 'han', 'Haze_04377' => 'cav', 'Haze_11298' => 'cav', 'Haze_24547' => 'cav', 'Haze_24550' => 'cav', 'Haze_26587' => 'cav', 'Hma1.2p1_0650F.1_g195410' => 'hma', 'Hma1.2p1_0893F.1_g233470' => 'hma', 'HPP92_006508' => 'vpl', 'HPP92_024780' => 'vpl', 'Hund02688' => 'sun', 'Hund09380' => 'sun', 'Hund09381' => 'sun', 'Hund09832' => 'sun', 'Hund09833' => 'sun', 'Hund11351' => 'sun', 'Hund11513' => 'sun', 'Lalb_Chr06g0162591' => 'lal', 'Lalb_Chr06g0162601' => 'lal', 'Lalb_Chr06g0169321' => 'lal', 'Lalb_Chr09g0330951' => 'lal', 'Lalb_Chr16g0387631' => 'lal', 'Lalb_Chr21g0306241' => 'lal', 'Lalb_Chr25g0290051' => 'lal', 'Lalb_Chr25g0290061' => 'lal', 'Lalb_Chr25g0290071' => 'lal', 'Lj1g0003876' => 'lja', 'Lj1P1207T36' => 'lonja', 'Lj2C1156G12' => 'lonja', 'Lj3A793G39' => 'lonja', 'Lj3C580G2' => 'lonja', 'Lj3C780G2' => 'lonja', 'Lj3C780T4' => 'lonja', 'Lj3C793G9' => 'lonja', 'Lj4g0012960' => 'lja', 'Lj5g0021252' => 'lja', 'Lj5g0021484' => 'lja', 'Lj5g0024528' => 'lja', 'Lj6A399T12' => 'lonja', 'Lj6A656G65' => 'lonja', 'Lsat_1_v5_gn_3_125500' => 'lsa', 'Lsat_1_v5_gn_3_125540' => 'lsa', 'Lsat_1_v5_gn_5_72701' => 'lsa', 'Lsat_1_v5_gn_8_91560' => 'lsa', 'Lsat_1_v5_gn_9_9640' => 'lsa', 'Manes.01G200600' => 'mes', 'Manes.01G200700' => 'mes', 'Manes.03G168900' => 'mes', 'Manes.03G169000' => 'mes', 'Manes.05G085801' => 'mes', 'Manes.05G086200' => 'mes', 'Manes.15G036700' => 'mes', 'Manes.15G036900' => 'mes', 'Mapoly0004s0172' => 'mpo', 'Mapoly0023s0001' => 'mpo', 'Mapoly0142s0012' => 'mpo', 'MBI01_g32854_MAGBIO' => 'mbi', 'MBI11_g24427_MAGBIO' => 'mbi', 'MBI11_g47319_MAGBIO' => 'mbi', 'MCO01G433' => 'mco', 'MD00G1187800' => 'mdo', 'MD04G1226500' => 'mdo', 'MD05G1203900' => 'mdo', 'MD10G1191100' => 'mdo', 'MD12G1243500' => 'mdo', 'MD13G1207000' => 'mdo', 'MD13G1207100' => 'mdo', 'MD16G1208600' => 'mdo', 'Medtr1g050352' => 'mtr', 'Medtr1g070385' => 'mtr', 'Medtr1g070450' => 'mtr', 'Medtr1g075200' => 'mtr', 'Medtr1g075250' => 'mtr', 'Medtr1g075260' => 'mtr', 'Medtr1g475250' => 'mtr', 'Medtr4g075450' => 'mtr', 'Medtr7g096300' => 'mtr', 'Medtr8g105110' => 'mtr', 'MELO3C006470.2' => 'cme', 'MELO3C006471.2' => 'cme', 'MELO3C020772.2' => 'cme', 'MELO3C026780.2' => 'cme', 'MELO3C026781.2' => 'cme', 'Migut.D00390' => 'egut', 'Migut.G00435' => 'egut', 'Migut.G00436' => 'egut', 'Migut.G00718' => 'egut', 'MSTRG.21891' => 'ama', 'MSTRG.26910' => 'ama', 'MSTRG.4099' => 'ama', 'MSTRG.9925' => 'ama', 'Nitab4.5_0000165g0010' => 'nta', 'Nitab4.5_0000209g0180' => 'nta', 'Nitab4.5_0000244g0440' => 'nta', 'Nitab4.5_0000525g0220' => 'nta', 'Nitab4.5_0001597g0020' => 'nta', 'Nitab4.5_0001878g0040' => 'nta', 'Nitab4.5_0001878g0060' => 'nta', 'Nitab4.5_0002838g0100' => 'nta', 'Nitab4.5_0002838g0120' => 'nta', 'Nitab4.5_0004798g0030' => 'nta', 'Nitab4.5_0005420g0010' => 'nta', 'Nitab4.5_0005507g0010' => 'nta', 'Nitab4.5_0005574g0020' => 'nta', 'Nitab4.5_0005838g0010' => 'nta', 'Nitab4.5_0010580g0020' => 'nta', 'Nn1g02599' => 'nnu', 'Nn1g02608' => 'nnu', 'Nn3g17742' => 'nnu', 'Nn3g19534' => 'nnu', 'Nn3g19535' => 'nnu', 'Oeu008790.1' => 'oeu', 'Oeu008792.1' => 'oeu', 'Oeu032590.1' => 'oeu', 'Oeu035349.1' => 'oeu', 'Oeu049791.1' => 'oeu', 'Os01g0774500' => 'osa', 'Os03g0628800' => 'osa', 'Os03g0798600' => 'osa', 'Os05g0508800' => 'osa', 'Peaxi162Scf00036g02018' => 'pax', 'Peaxi162Scf00578g00032' => 'pax', 'Peaxi162Scf00578g00317' => 'pax', 'Peaxi162Scf00785g00114' => 'pax', 'Peaxi162Scf00813g00119' => 'pax', 'Peaxi162Scf00906g00227' => 'pax', 'PGR004G0875' => 'pgr', 'PGR004G2424' => 'pgr', 'PGR031G1239' => 'pgr', 'PGR031G2474' => 'pgr', 'PGR044G0423' => 'pgr', 'PGSC0003DMG400001128' => 'stu', 'PGSC0003DMG400007336' => 'stu', 'PGSC0003DMG400016318' => 'stu', 'PGSC0003DMG400016319' => 'stu', 'PGSC0003DMG400018074' => 'stu', 'Phvul.001G157700' => 'pvu', 'Phvul.002G148550' => 'pvu', 'Phvul.002G320200' => 'pvu', 'Phvul.003G089200' => 'pvu', 'Phvul.007G126000' => 'pvu', 'Phvul.007G126100' => 'pvu', 'Phvul.007G178000' => 'pvu', 'Phvul.007G178200' => 'pvu', 'Potri.002G043000' => 'ptr', 'Potri.002G043200' => 'ptr', 'Potri.003G123750' => 'ptr', 'Potri.005G055401' => 'ptr', 'Potri.005G219700' => 'ptr', 'Potri.005G220000' => 'ptr', 'Potri.008G161901' => 'ptr', 'Potri.008G162000' => 'ptr', 'Potri.008G162400' => 'ptr', 'Potri.010G076900' => 'ptr', 'Pp3c12_9180' => 'ppa', 'Pp3c13_19770' => 'ppa', 'Pp3c14_22950' => 'ppa', 'Pp3c16_12160' => 'ppa', 'Pp3c27_7820' => 'ppa', 'Pp3c2_3490' => 'ppa', 'Pp3c3_23700' => 'ppa', 'Pp3c3_36520' => 'ppa', 'Pp3c4_15250' => 'ppa', 'PRCOL_00007002' => 'pco', 'Prupe.1G030600' => 'ppe', 'Prupe.1G030700' => 'ppe', 'Prupe.6G345200' => 'ppe', 'Prupe.8G230300' => 'ppe', 'Prupe.8G230500' => 'ppe', 'Psat3g059600' => 'psa', 'Psat5g200920' => 'psa', 'Psat6g056440' => 'psa', 'Psat6g057360' => 'psa', 'Psat6g134120' => 'psa', 'Psat6g134160' => 'psa', 'Psat7g008640' => 'psa', 'Psat7g185240' => 'psa', 'PSO017G1330' => 'pso', 'PSO063G6097' => 'pso', 'PSO170G0835' => 'pso', 'PSO170G2499' => 'pso', 'PSO210G5058' => 'pso', 'PSO210G6154' => 'pso', 'PSO585G0031' => 'pso', 'PSO832G0264' => 'pso', 'PSO832G4288' => 'pso', 'QL03p027355' => 'qlo', 'QL03p027430' => 'qlo', 'QL04p081380' => 'qlo', 'QL06p015642' => 'qlo', 'QL06p015650' => 'qlo', 'QL06p015686' => 'qlo', 'QL12p042927' => 'qlo', 'QL93p1863_0035' => 'qlo', 'RcHm_v2.0_Chr3g0450581' => 'rch', 'RcHm_v2.0_Chr4g0390371' => 'rch', 'RcHm_v2.0_Chr4g0390381' => 'rch', 'RcHm_v2.0_Chr4g0390491' => 'rch', 'RcHm_v2.0_Chr4g0390501' => 'rch', 'RcHm_v2.0_Chr6g0289231' => 'rch', 'Rhsim04G0190400' => 'rsi', 'Rhsim04G0190500' => 'rsi', 'Rhsim04G0190600' => 'rsi', 'Rhsim13G0031400' => 'rsi', 'Rhsim13G0165600' => 'rsi', 'RhsimUnG0114600' => 'rsi', 'RhsimUnG0114700' => 'rsi', 'Sabra02G0034800' => 'sbr', 'Sabra02G0035100' => 'sbr', 'Sabra05G0168600' => 'sbr', 'Sabra05G0168800' => 'sbr', 'Sabra08G0123700' => 'sbr', 'Sabra10G0031900' => 'sbr', 'Sabra13G0039000' => 'sbr', 'SalBow2G0782' => 'sbo', 'SalBow2G1403' => 'sbo', 'SalBow4G0074' => 'sbo', 'SalBow4G2635' => 'sbo', 'SalBow5G3010' => 'sbo', 'Sc05g0000870' => 'sci', 'Sc05g0000890' => 'sci', 'Sc13g0005000' => 'sci', 'Sc13g0005030' => 'sci', 'Sc19g0003790' => 'sci', 'Sc19g0003800' => 'sci', 'Sed0003467' => 'sed', 'Sed0009355' => 'sed', 'Sed0009894' => 'sed', 'Sed0011972' => 'sed', 'Sed0021483' => 'sed', 'Sed0021750' => 'sed', 'Sed0026279' => 'sed', 'SEGI_05312' => 'sgi', 'SEGI_10112' => 'sgi', 'SEGI_15835' => 'sgi', 'SEGI_30386' => 'sgi', 'SEGI_34122' => 'sgi', 'SEGI_35063' => 'sgi', 'SGA_v2.0_scaffold101G29794' => 'sas', 'SGA_v2.0_scaffold1G00573' => 'sas', 'SGA_v2.0_scaffold79G25637' => 'sas', 'SGA_v2.0_scaffold88G27283' => 'sas', 'SGA_v2.0_scaffold88G27285' => 'sas', 'SGA_v2.0_scaffold88G27331' => 'sas', 'SHI09937' => 'shi', 'SMO119G0302' => 'smo', 'SMO137G0231' => 'smo', 'SMO367G1151' => 'smo', 'Solyc02g082000.3' => 'sly', 'Solyc06g031670.3' => 'sly', 'Solyc06g053810.3' => 'sly', 'Solyc07g025457.1' => 'sly', 'Solyc08g059740.1' => 'sly', 'Solyc08g059750.3' => 'sly', 'Solyc09g083370.3' => 'sly', 'Solyc12g038950.3' => 'sly', 'Sopen02g026630' => 'spe', 'Sopen06g018930' => 'spe', 'Sopen06g018940' => 'spe', 'Sopen08g009460' => 'spe', 'Sopen09g032290' => 'spe', 'Sp1g03080' => 'spa', 'Sp1g03090' => 'spa', 'Sp1g05480' => 'spa', 'Sp2g07860' => 'spa', 'Sp2g08430' => 'spa', 'Sp2g08440' => 'spa', 'Sp2g26200' => 'spa', 'Sp4g13170' => 'spa', 'Sp6g33840' => 'spa', 'SpUn1204_0010' => 'spa', 'TAR365G0908' => 'tar', 'TAR381G1270' => 'tar', 'TAR381G1651' => 'tar', 'TAR625G1131' => 'tar', 'TAR633G0962' => 'tar', 'TAR633G1729' => 'tar', 'TAR633G1864' => 'tar', 'TAR636G0221' => 'tar', 'TAR636G0314' => 'tar', 'TAR636G3202' => 'tar', 'THA.LOC104800805' => 'tha', 'THA.LOC104801096' => 'tha', 'THA.LOC104801555' => 'tha', 'THA.LOC104808491' => 'tha', 'THA.LOC104808595' => 'tha', 'THA.LOC104815985' => 'tha', 'THA.LOC104822250' => 'tha', 'THA.LOC104826071' => 'tha', 'Thecc.01G265200' => 'tca', 'Thecc.01G265300' => 'tca', 'Thecc.01G265700' => 'tca', 'Thecc.03G109100' => 'tca', 'Thecc.04G245900' => 'tca', 'Thecc.04G246000' => 'tca', 'Thhalv10003334m.g' => 'esa', 'Thhalv10005508m.g' => 'esa', 'Thhalv10005643m.g' => 'esa', 'Thhalv10007316m.g' => 'esa', 'Thhalv10009006m.g' => 'esa', 'Thhalv10009309m.g' => 'esa', 'Thhalv10014917m.g' => 'esa', 'Thhalv10014919m.g' => 'esa', 'Thhalv10015393m.g' => 'esa', 'Thhalv10016515m.g' => 'esa', 'Thhalv10029242m.g' => 'esa', 'TPR.G16654' => 'tpr', 'TPR.G20589' => 'tpr', 'TPR.G23029' => 'tpr', 'TPR.G27731' => 'tpr', 'TPR.G28889' => 'tpr', 'TPR.G28899' => 'tpr', 'TPR.G30846' => 'tpr', 'TPR.G5452' => 'tpr', 'TPR.G5713' => 'tpr', 'TPR.G9046' => 'tpr', 'TPR.G9061' => 'tpr', 'TWI09G1075' => 'twi', 'TWI12G0806' => 'twi', 'TWI18G0108' => 'twi', 'TWI53G1361' => 'twi', 'TWI73G0185' => 'twi', 'TWI73G0427' => 'twi', 'unitig_37.g12001' => 'ugi', 'unitig_747.g21660' => 'ugi', 'unitig_748.g7232' => 'ugi', 'unitig_748.g7315' => 'ugi', 'unitig_85.g27262' => 'ugi', 'unitig_92.g28220' => 'ugi', 'vmacro02632' => 'vma', 'vmacro08410' => 'vma', 'vmacro08411' => 'vma', 'vmacro15407' => 'vma', 'VMungo0251G3619' => 'vmu', 'VMungo0720G1204' => 'vmu', 'VMungo0720G1918' => 'vmu', 'VMungo0720G2387' => 'vmu', 'VMungo0720G2961' => 'vmu', 'VMungo1215G2154' => 'vmu', 'VMungo1383G2411' => 'vmu', 'Zm00001eb051130' => 'zma', 'Zm00001eb116830' => 'zma', 'Zm00001eb116850' => 'zma', 'Zm00001eb151740' => 'zma', 'Zm00001eb292360' => 'zma', 'Zm00001eb301640' => 'zma' ) $gf_id = 'HOM05D000856' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000856' ) $data_identifier = 'HOM05D000856' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 13, 'ath' => (int) 10, 'atr' => (int) 1, 'acertr' => (int) 8, 'cqu' => (int) 6, 'bca' => (int) 21, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 11, 'car' => (int) 9, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 8, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 5, 'fan' => (int) 16, 'fve' => (int) 6, 'gma' => (int) 11, 'ghi' => (int) 19, 'gra' => (int) 9, 'vvi' => (int) 7, 'han' => (int) 17, 'cav' => (int) 5, 'hma' => (int) 2, 'vpl' => (int) 2, 'sun' => (int) 7, 'lal' => (int) 9, 'lja' => (int) 5, 'lonja' => (int) 9, 'lsa' => (int) 5, 'mes' => (int) 8, 'mpo' => (int) 3, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 10, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 15, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 9, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 9, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 6, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 5, 'spa' => (int) 10, 'tar' => (int) 10, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 11, 'tpr' => (int) 11, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 4, 'vmu' => (int) 7, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb301640' $species_info = array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ) $local_species = 'mco' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000856', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p00010' => 'bna', 'A03p04160' => 'bna', 'A03p17160' => 'bna', 'A04p23370' => 'bna', 'A05p14860' => 'bna', 'A08p37020' => 'bna', 'A09p08050' => 'bna', 'A09p66800' => 'bna', 'A09p67940' => 'bna', 'A10p02680' => 'bna', 'A10p05320' => 'bna', 'Aa31LG1G20560' => 'aar', 'Aa31LG1G20610' => 'aar', 'Aa31LG1G7810' => 'aar', 'Aa31LG5G3590' => 'aar', 'Aa31LG5G6140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3819' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4683' => 'aag', 'Actinidia04480' => 'ach', 'Actinidia05466' => 'ach', 'Actinidia08445' => 'ach', 'Actinidia21170' => 'ach', 'Actinidia24812' => 'ach', 'Actinidia24951' => 'ach', 'Actinidia40088' => 'ach', 'Ah.02g111660' => 'amhyb', 'Ah.11g048900' => 'amhyb', 'Ah.11g049910' => 'amhyb', 'AL1G13870' => 'aly', 'AL1G13880' => 'aly', 'AL1G16760' => 'aly', 'AL390U10020' => 'aly', 'AL4G25520' => 'aly', 'AL6G19890' => 'aly', 'AL6G19900' => 'aly', 'AL6G19910' => 'aly', 'AL8G40100' => 'aly', 'Aqoxy2G03562' => 'aox', 'Aqoxy5G00316' => 'aox', 'Aqoxy5G00926' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1628KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1H403S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2FU6SJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.882I6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8YRY2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YN1SN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AF70II' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZA8L1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F916KL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHRD8H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KTZ8QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S22EMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8M29T' => 'arhy', 'AT1G04270' => 'ath', 'AT1G04280' => 'ath', 'AT1G06750' => 'ath', 'AT1G33850' => 'ath', 'AT2G30630' => 'ath', 'AT5G09490' => 'ath', 'AT5G09500' => 'ath', 'AT5G09510' => 'ath', 'AT5G43640' => 'ath', 'AT5G63070' => 'ath', 'ATR0605G315' => 'atr', 'Atru.chr11.175' => 'acertr', 'Atru.chr11.653' => 'acertr', 'Atru.chr3.1616' => 'acertr', 'Atru.chr4.2230' => 'acertr', 'Atru.chr4.2232' => 'acertr', 'Atru.chr5.1598' => 'acertr', 'Atru.chr5.1600' => 'acertr', 'Atru.chr5.2188' => 'acertr', 'AUR62008326' => 'cqu', 'AUR62011922' => 'cqu', 'AUR62011924' => 'cqu', 'AUR62021771' => 'cqu', 'AUR62032237' => 'cqu', 'AUR62032240' => 'cqu', 'BcaB01g05572' => 'bca', 'BcaB02g10337' => 'bca', 'BcaB04g19944' => 'bca', 'BcaB05g21548' => 'bca', 'BcaB05g21549' => 'bca', 'BcaB05g23227' => 'bca', 'BcaB06g26256' => 'bca', 'BcaB06g26257' => 'bca', 'BcaB06g28379' => 'bca', 'BcaC02g11159' => 'bca', 'BcaC03g13258' => 'bca', 'BcaC03g13259' => 'bca', 'BcaC05g24456' => 'bca', 'BcaC05g24457' => 'bca', 'BcaC07g36922' => 'bca', 'BcaC07g36923' => 'bca', 'BcaC07g42050' => 'bca', 'BcaC07g42176' => 'bca', 'BcaC07g42195' => 'bca', 'BcaC07g42196' => 'bca', 'BcaNung06674' => 'bca', 'BolC2t06351H' => 'bol', 'BolC2t06352H' => 'bol', 'BolC3t12993H' => 'bol', 'BolC4t23525H' => 'bol', 'BolC4t27475H' => 'bol', 'BolC5t29025H' => 'bol', 'BolC5t29026H' => 'bol', 'BolC8t46898H' => 'bol', 'BolC8t46899H' => 'bol', 'BolC8t52630H' => 'bol', 'BolC8t52765H' => 'bol', 'BolC9t53824H' => 'bol', 'BraA03t09760Z' => 'bra', 'BraA03t10990Z' => 'bra', 'BraA05t20413Z' => 'bra', 'BraA08t35602Z' => 'bra', 'BraA09t36458Z' => 'bra', 'BraA09t42018Z' => 'bra', 'BraA09t42129Z' => 'bra', 'BraA10t42536Z' => 'bra', 'BraA10t42537Z' => 'bra', 'C01p10690' => 'bna', 'C02p03890' => 'bna', 'C02p03900' => 'bna', 'C03p04620' => 'bna', 'C04p19870' => 'bna', 'C04p59670' => 'bna', 'C05p02460' => 'bna', 'C05p02470' => 'bna', 'C08p00980' => 'bna', 'C08p00990' => 'bna', 'C08p51030' => 'bna', 'C08p52360' => 'bna', 'C09p09120' => 'bna', 'CAN.G19.15' => 'can', 'CAN.G251.10' => 'can', 'CAN.G251.9' => 'can', 'CAN.G398.24' => 'can', 'CAN.G410.32' => 'can', 'CAN.G881.2' => 'can', 'CANSAT01G3025' => 'cansat', 'CANSAT78G1211' => 'cansat', 'CANSAT78G1218' => 'cansat', 'CANSAT78G1521' => 'cansat', 'CANSAT78G1670' => 'cansat', 'CARHR003600' => 'chi', 'CARHR003610' => 'chi', 'CARHR006290' => 'chi', 'CARHR006430' => 'chi', 'CARHR124110' => 'chi', 'CARHR203870' => 'chi', 'CARHR203880' => 'chi', 'CARHR203890' => 'chi', 'CARHR276880' => 'chi', 'Carub.0001s0346' => 'cru', 'Carub.0001s0347' => 'cru', 'Carub.0001s0607' => 'cru', 'Carub.0003s2768' => 'cru', 'Carub.0003s2769' => 'cru', 'Carub.0004s1178' => 'cru', 'Carub.0006s0806' => 'cru', 'Carub.0006s0807' => 'cru', 'Carub.0006s0808' => 'cru', 'Carub.0008s0501' => 'cru', 'Carub.0008s2379' => 'cru', 'Ca_08655_v3' => 'car', 'Ca_08922_v3' => 'car', 'Ca_08923_v3' => 'car', 'Ca_09119_v3' => 'car', 'Ca_09703_v3' => 'car', 'Ca_09705_v3' => 'car', 'Ca_09835_v3' => 'car', 'Ca_26403_v3' => 'car', 'Ca_30719_v3' => 'car', 'CBR_g17958' => 'cbr', 'CBR_g40516' => 'cbr', 'Cc00_g05350' => 'ccan', 'Cc01_g18690' => 'ccan', 'Cc03_g04830' => 'ccan', 'Cc03_g04850' => 'ccan', 'CDE02G4469' => 'cde', 'CDE06G0883' => 'cde', 'CDE06G1295' => 'cde', 'CDE06G1390' => 'cde', 'CDE07G0584' => 'cde', 'CDE07G1084' => 'cde', 'CDE08G1259' => 'cde', 'Cfa002341' => 'cfa', 'Cfa024337' => 'cfa', 'Ciclev10004749m.g' => 'ccl', 'Ciclev10006127m.g' => 'ccl', 'Ciclev10019720m.g' => 'ccl', 'Ciclev10022652m.g' => 'ccl', 'CiPaw.01G190400' => 'cil', 'CiPaw.01G190500' => 'cil', 'CiPaw.02G116400' => 'cil', 'CiPaw.02G116500' => 'cil', 'CiPaw.04G183000' => 'cil', 'CiPaw.04G183300' => 'cil', 'ClCG05G004610' => 'cla', 'ClCG05G004620' => 'cla', 'ClCG06G006730' => 'cla', 'ClCG06G006740' => 'cla', 'ClCG11G003690' => 'cla', 'COL.COLO4_08276' => 'col', 'COL.COLO4_08277' => 'col', 'COL.COLO4_15787' => 'col', 'COL.COLO4_15789' => 'col', 'Cpa.g.c44815' => 'cpa', 'Cpa.g.sc52.144' => 'cpa', 'Cpa.g.sc58.46' => 'cpa', 'Cpa.g.sc58.47' => 'cpa', 'Cre08.g360900' => 'cre', 'CsaV3_2G013030' => 'csa', 'CsaV3_2G013050' => 'csa', 'CsaV3_2G015620' => 'csa', 'CsaV3_3G012590' => 'csa', 'CsaV3_3G012600' => 'csa', 'CSS0001641' => 'camsi', 'CSS0008310' => 'camsi', 'CSS0013011' => 'camsi', 'CSS0017147' => 'camsi', 'CSS0022970' => 'camsi', 'CSS0025655' => 'camsi', 'CSS0028665' => 'camsi', 'CSS0029117' => 'camsi', 'CSS0032024' => 'camsi', 'CSS0039681' => 'camsi', 'CSS0046516' => 'camsi', 'CSS0050307' => 'camsi', 'DCAR_005871' => 'dca', 'DCAR_007342' => 'dca', 'DCAR_024228' => 'dca', 'DCAR_027277' => 'dca', 'DCAR_030718' => 'dca', 'Dinv20287' => 'din', 'Dinv22461' => 'din', 'Dinv22464' => 'din', 'Dinv29912' => 'din', 'Dinv29913' => 'din', 'Dinv34580' => 'din', 'Dinv34582' => 'din', 'Dinv44632' => 'din', 'Duzib052G0266' => 'dzi', 'Duzib133G0907' => 'dzi', 'Duzib133G1034' => 'dzi', 'Duzib138G0207' => 'dzi', 'Duzib138G0491' => 'dzi', 'Duzib151G0812' => 'dzi', 'Duzib151G1166' => 'dzi', 'Duzib168G0192' => 'dzi', 'Duzib211G0077' => 'dzi', 'Duzib212G0429' => 'dzi', 'Duzib212G0472' => 'dzi', 'ECA233G2617' => 'eca', 'ECA236G4188' => 'eca', 'ECA240G0936' => 'eca', 'ECA240G1129' => 'eca', 'ECA247G0623' => 'eca', 'EL10Ac5g10451' => 'bvu', 'EL10Ac5g10453' => 'bvu', 'EL10Ac5g10894' => 'bvu', 'Eucgr.H00192' => 'egr', 'Eucgr.H00193' => 'egr', 'Eucgr.H00194' => 'egr', 'Eucgr.J01562' => 'egr', 'Eucgr.K03301' => 'egr', 'FAN02G0632' => 'fan', 'FAN05G5378' => 'fan', 'FAN09G3247' => 'fan', 'FAN12G0435' => 'fan', 'FAN12G2426' => 'fan', 'FAN14G1707' => 'fan', 'FAN14G4725' => 'fan', 'FAN15G2071' => 'fan', 'FAN17G3065' => 'fan', 'FAN19G1376' => 'fan', 'FAN20G0354' => 'fan', 'FAN20G2429' => 'fan', 'FAN20G2658' => 'fan', 'FAN24G2343' => 'fan', 'FAN27G2362' => 'fan', 'FAN28G1765' => 'fan', 'FvH4_1g16020' => 'fve', 'FvH4_2g04890' => 'fve', 'FvH4_2g22270' => 'fve', 'FvH4_4g02630' => 'fve', 'FvH4_4g02640' => 'fve', 'FvH4_6g02650' => 'fve', 'Glyma.02G140600' => 'gma', 'Glyma.03G159900' => 'gma', 'Glyma.05G234800' => 'gma', 'Glyma.07G269600' => 'gma', 'Glyma.08G042300' => 'gma', 'Glyma.10G033500' => 'gma', 'Glyma.10G185200' => 'gma', 'Glyma.17G004300' => 'gma', 'Glyma.19G161900' => 'gma', 'Glyma.20G205100' => 'gma', 'Glyma.20G205200' => 'gma', 'Gohir.A01G139101' => 'ghi', 'Gohir.A02G035600' => 'ghi', 'Gohir.A02G117901' => 'ghi', 'Gohir.A07G210100' => 'ghi', 'Gohir.A07G210200' => 'ghi', 'Gohir.A08G061100' => 'ghi', 'Gohir.A09G223000' => 'ghi', 'Gohir.A09G223100' => 'ghi', 'Gohir.A10G113900' => 'ghi', 'Gohir.A10G114000' => 'ghi', 'Gohir.D02G042300' => 'ghi', 'Gohir.D07G216100' => 'ghi', 'Gohir.D07G216200' => 'ghi', 'Gohir.D08G070400' => 'ghi', 'Gohir.D09G225000' => 'ghi', 'Gohir.D09G225100' => 'ghi', 'Gohir.D10G152300' => 'ghi', 'Gohir.D10G153200' => 'ghi', 'Gohir.D11G133701' => 'ghi', 'Gorai.004G074100' => 'gra', 'Gorai.005G046800' => 'gra', 'Gorai.006G246500' => 'gra', 'Gorai.006G246600' => 'gra', 'Gorai.007G142900' => 'gra', 'Gorai.011G171000' => 'gra', 'Gorai.011G171100' => 'gra', 'Gorai.013G104300' => 'gra', 'Gorai.013G104400' => 'gra', 'GSVIVG01000754001' => 'vvi', 'GSVIVG01000756001' => 'vvi', 'GSVIVG01010903001' => 'vvi', 'GSVIVG01017623001' => 'vvi', 'GSVIVG01018113001' => 'vvi', 'GSVIVG01018116001' => 'vvi', 'GSVIVG01018118001' => 'vvi', 'HanXRQChr03g0076211' => 'han', 'HanXRQChr03g0092431' => 'han', 'HanXRQChr03g0092441' => 'han', 'HanXRQChr03g0092591' => 'han', 'HanXRQChr03g0092671' => 'han', 'HanXRQChr03g0092681' => 'han', 'HanXRQChr03g0092691' => 'han', 'HanXRQChr03g0092701' => 'han', 'HanXRQChr03g0092721' => 'han', 'HanXRQChr03g0092731' => 'han', 'HanXRQChr04g0113681' => 'han', 'HanXRQChr10g0281371' => 'han', 'HanXRQChr11g0337141' => 'han', 'HanXRQChr13g0424521' => 'han', 'HanXRQChr13g0424531' => 'han', 'HanXRQChr13g0424541' => 'han', 'HanXRQChr16g0498221' => 'han', 'Haze_04377' => 'cav', 'Haze_11298' => 'cav', 'Haze_24547' => 'cav', 'Haze_24550' => 'cav', 'Haze_26587' => 'cav', 'Hma1.2p1_0650F.1_g195410' => 'hma', 'Hma1.2p1_0893F.1_g233470' => 'hma', 'HPP92_006508' => 'vpl', 'HPP92_024780' => 'vpl', 'Hund02688' => 'sun', 'Hund09380' => 'sun', 'Hund09381' => 'sun', 'Hund09832' => 'sun', 'Hund09833' => 'sun', 'Hund11351' => 'sun', 'Hund11513' => 'sun', 'Lalb_Chr06g0162591' => 'lal', 'Lalb_Chr06g0162601' => 'lal', 'Lalb_Chr06g0169321' => 'lal', 'Lalb_Chr09g0330951' => 'lal', 'Lalb_Chr16g0387631' => 'lal', 'Lalb_Chr21g0306241' => 'lal', 'Lalb_Chr25g0290051' => 'lal', 'Lalb_Chr25g0290061' => 'lal', 'Lalb_Chr25g0290071' => 'lal', 'Lj1g0003876' => 'lja', 'Lj1P1207T36' => 'lonja', 'Lj2C1156G12' => 'lonja', 'Lj3A793G39' => 'lonja', 'Lj3C580G2' => 'lonja', 'Lj3C780G2' => 'lonja', 'Lj3C780T4' => 'lonja', 'Lj3C793G9' => 'lonja', 'Lj4g0012960' => 'lja', 'Lj5g0021252' => 'lja', 'Lj5g0021484' => 'lja', 'Lj5g0024528' => 'lja', 'Lj6A399T12' => 'lonja', 'Lj6A656G65' => 'lonja', 'Lsat_1_v5_gn_3_125500' => 'lsa', 'Lsat_1_v5_gn_3_125540' => 'lsa', 'Lsat_1_v5_gn_5_72701' => 'lsa', 'Lsat_1_v5_gn_8_91560' => 'lsa', 'Lsat_1_v5_gn_9_9640' => 'lsa', 'Manes.01G200600' => 'mes', 'Manes.01G200700' => 'mes', 'Manes.03G168900' => 'mes', 'Manes.03G169000' => 'mes', 'Manes.05G085801' => 'mes', 'Manes.05G086200' => 'mes', 'Manes.15G036700' => 'mes', 'Manes.15G036900' => 'mes', 'Mapoly0004s0172' => 'mpo', 'Mapoly0023s0001' => 'mpo', 'Mapoly0142s0012' => 'mpo', 'MBI01_g32854_MAGBIO' => 'mbi', 'MBI11_g24427_MAGBIO' => 'mbi', 'MBI11_g47319_MAGBIO' => 'mbi', 'MCO01G433' => 'mco', 'MD00G1187800' => 'mdo', 'MD04G1226500' => 'mdo', 'MD05G1203900' => 'mdo', 'MD10G1191100' => 'mdo', 'MD12G1243500' => 'mdo', 'MD13G1207000' => 'mdo', 'MD13G1207100' => 'mdo', 'MD16G1208600' => 'mdo', 'Medtr1g050352' => 'mtr', 'Medtr1g070385' => 'mtr', 'Medtr1g070450' => 'mtr', 'Medtr1g075200' => 'mtr', 'Medtr1g075250' => 'mtr', 'Medtr1g075260' => 'mtr', 'Medtr1g475250' => 'mtr', 'Medtr4g075450' => 'mtr', 'Medtr7g096300' => 'mtr', 'Medtr8g105110' => 'mtr', 'MELO3C006470.2' => 'cme', 'MELO3C006471.2' => 'cme', 'MELO3C020772.2' => 'cme', 'MELO3C026780.2' => 'cme', 'MELO3C026781.2' => 'cme', 'Migut.D00390' => 'egut', 'Migut.G00435' => 'egut', 'Migut.G00436' => 'egut', 'Migut.G00718' => 'egut', 'MSTRG.21891' => 'ama', 'MSTRG.26910' => 'ama', 'MSTRG.4099' => 'ama', 'MSTRG.9925' => 'ama', 'Nitab4.5_0000165g0010' => 'nta', 'Nitab4.5_0000209g0180' => 'nta', 'Nitab4.5_0000244g0440' => 'nta', 'Nitab4.5_0000525g0220' => 'nta', 'Nitab4.5_0001597g0020' => 'nta', 'Nitab4.5_0001878g0040' => 'nta', 'Nitab4.5_0001878g0060' => 'nta', 'Nitab4.5_0002838g0100' => 'nta', 'Nitab4.5_0002838g0120' => 'nta', 'Nitab4.5_0004798g0030' => 'nta', 'Nitab4.5_0005420g0010' => 'nta', 'Nitab4.5_0005507g0010' => 'nta', 'Nitab4.5_0005574g0020' => 'nta', 'Nitab4.5_0005838g0010' => 'nta', 'Nitab4.5_0010580g0020' => 'nta', 'Nn1g02599' => 'nnu', 'Nn1g02608' => 'nnu', 'Nn3g17742' => 'nnu', 'Nn3g19534' => 'nnu', 'Nn3g19535' => 'nnu', 'Oeu008790.1' => 'oeu', 'Oeu008792.1' => 'oeu', 'Oeu032590.1' => 'oeu', 'Oeu035349.1' => 'oeu', 'Oeu049791.1' => 'oeu', 'Os01g0774500' => 'osa', 'Os03g0628800' => 'osa', 'Os03g0798600' => 'osa', 'Os05g0508800' => 'osa', 'Peaxi162Scf00036g02018' => 'pax', 'Peaxi162Scf00578g00032' => 'pax', 'Peaxi162Scf00578g00317' => 'pax', 'Peaxi162Scf00785g00114' => 'pax', 'Peaxi162Scf00813g00119' => 'pax', 'Peaxi162Scf00906g00227' => 'pax', 'PGR004G0875' => 'pgr', 'PGR004G2424' => 'pgr', 'PGR031G1239' => 'pgr', 'PGR031G2474' => 'pgr', 'PGR044G0423' => 'pgr', 'PGSC0003DMG400001128' => 'stu', 'PGSC0003DMG400007336' => 'stu', 'PGSC0003DMG400016318' => 'stu', 'PGSC0003DMG400016319' => 'stu', 'PGSC0003DMG400018074' => 'stu', 'Phvul.001G157700' => 'pvu', 'Phvul.002G148550' => 'pvu', 'Phvul.002G320200' => 'pvu', 'Phvul.003G089200' => 'pvu', 'Phvul.007G126000' => 'pvu', 'Phvul.007G126100' => 'pvu', 'Phvul.007G178000' => 'pvu', 'Phvul.007G178200' => 'pvu', 'Potri.002G043000' => 'ptr', 'Potri.002G043200' => 'ptr', 'Potri.003G123750' => 'ptr', 'Potri.005G055401' => 'ptr', 'Potri.005G219700' => 'ptr', 'Potri.005G220000' => 'ptr', 'Potri.008G161901' => 'ptr', 'Potri.008G162000' => 'ptr', 'Potri.008G162400' => 'ptr', 'Potri.010G076900' => 'ptr', 'Pp3c12_9180' => 'ppa', 'Pp3c13_19770' => 'ppa', 'Pp3c14_22950' => 'ppa', 'Pp3c16_12160' => 'ppa', 'Pp3c27_7820' => 'ppa', 'Pp3c2_3490' => 'ppa', 'Pp3c3_23700' => 'ppa', 'Pp3c3_36520' => 'ppa', 'Pp3c4_15250' => 'ppa', 'PRCOL_00007002' => 'pco', 'Prupe.1G030600' => 'ppe', 'Prupe.1G030700' => 'ppe', 'Prupe.6G345200' => 'ppe', 'Prupe.8G230300' => 'ppe', 'Prupe.8G230500' => 'ppe', 'Psat3g059600' => 'psa', 'Psat5g200920' => 'psa', 'Psat6g056440' => 'psa', 'Psat6g057360' => 'psa', 'Psat6g134120' => 'psa', 'Psat6g134160' => 'psa', 'Psat7g008640' => 'psa', 'Psat7g185240' => 'psa', 'PSO017G1330' => 'pso', 'PSO063G6097' => 'pso', 'PSO170G0835' => 'pso', 'PSO170G2499' => 'pso', 'PSO210G5058' => 'pso', 'PSO210G6154' => 'pso', 'PSO585G0031' => 'pso', 'PSO832G0264' => 'pso', 'PSO832G4288' => 'pso', 'QL03p027355' => 'qlo', 'QL03p027430' => 'qlo', 'QL04p081380' => 'qlo', 'QL06p015642' => 'qlo', 'QL06p015650' => 'qlo', 'QL06p015686' => 'qlo', 'QL12p042927' => 'qlo', 'QL93p1863_0035' => 'qlo', 'RcHm_v2.0_Chr3g0450581' => 'rch', 'RcHm_v2.0_Chr4g0390371' => 'rch', 'RcHm_v2.0_Chr4g0390381' => 'rch', 'RcHm_v2.0_Chr4g0390491' => 'rch', 'RcHm_v2.0_Chr4g0390501' => 'rch', 'RcHm_v2.0_Chr6g0289231' => 'rch', 'Rhsim04G0190400' => 'rsi', 'Rhsim04G0190500' => 'rsi', 'Rhsim04G0190600' => 'rsi', 'Rhsim13G0031400' => 'rsi', 'Rhsim13G0165600' => 'rsi', 'RhsimUnG0114600' => 'rsi', 'RhsimUnG0114700' => 'rsi', 'Sabra02G0034800' => 'sbr', 'Sabra02G0035100' => 'sbr', 'Sabra05G0168600' => 'sbr', 'Sabra05G0168800' => 'sbr', 'Sabra08G0123700' => 'sbr', 'Sabra10G0031900' => 'sbr', 'Sabra13G0039000' => 'sbr', 'SalBow2G0782' => 'sbo', 'SalBow2G1403' => 'sbo', 'SalBow4G0074' => 'sbo', 'SalBow4G2635' => 'sbo', 'SalBow5G3010' => 'sbo', 'Sc05g0000870' => 'sci', 'Sc05g0000890' => 'sci', 'Sc13g0005000' => 'sci', 'Sc13g0005030' => 'sci', 'Sc19g0003790' => 'sci', 'Sc19g0003800' => 'sci', 'Sed0003467' => 'sed', 'Sed0009355' => 'sed', 'Sed0009894' => 'sed', 'Sed0011972' => 'sed', 'Sed0021483' => 'sed', 'Sed0021750' => 'sed', 'Sed0026279' => 'sed', 'SEGI_05312' => 'sgi', 'SEGI_10112' => 'sgi', 'SEGI_15835' => 'sgi', 'SEGI_30386' => 'sgi', 'SEGI_34122' => 'sgi', 'SEGI_35063' => 'sgi', 'SGA_v2.0_scaffold101G29794' => 'sas', 'SGA_v2.0_scaffold1G00573' => 'sas', 'SGA_v2.0_scaffold79G25637' => 'sas', 'SGA_v2.0_scaffold88G27283' => 'sas', 'SGA_v2.0_scaffold88G27285' => 'sas', 'SGA_v2.0_scaffold88G27331' => 'sas', 'SHI09937' => 'shi', 'SMO119G0302' => 'smo', 'SMO137G0231' => 'smo', 'SMO367G1151' => 'smo', 'Solyc02g082000.3' => 'sly', 'Solyc06g031670.3' => 'sly', 'Solyc06g053810.3' => 'sly', 'Solyc07g025457.1' => 'sly', 'Solyc08g059740.1' => 'sly', 'Solyc08g059750.3' => 'sly', 'Solyc09g083370.3' => 'sly', 'Solyc12g038950.3' => 'sly', 'Sopen02g026630' => 'spe', 'Sopen06g018930' => 'spe', 'Sopen06g018940' => 'spe', 'Sopen08g009460' => 'spe', 'Sopen09g032290' => 'spe', 'Sp1g03080' => 'spa', 'Sp1g03090' => 'spa', 'Sp1g05480' => 'spa', 'Sp2g07860' => 'spa', 'Sp2g08430' => 'spa', 'Sp2g08440' => 'spa', 'Sp2g26200' => 'spa', 'Sp4g13170' => 'spa', 'Sp6g33840' => 'spa', 'SpUn1204_0010' => 'spa', 'TAR365G0908' => 'tar', 'TAR381G1270' => 'tar', 'TAR381G1651' => 'tar', 'TAR625G1131' => 'tar', 'TAR633G0962' => 'tar', 'TAR633G1729' => 'tar', 'TAR633G1864' => 'tar', 'TAR636G0221' => 'tar', 'TAR636G0314' => 'tar', 'TAR636G3202' => 'tar', 'THA.LOC104800805' => 'tha', 'THA.LOC104801096' => 'tha', 'THA.LOC104801555' => 'tha', 'THA.LOC104808491' => 'tha', 'THA.LOC104808595' => 'tha', 'THA.LOC104815985' => 'tha', 'THA.LOC104822250' => 'tha', 'THA.LOC104826071' => 'tha', 'Thecc.01G265200' => 'tca', 'Thecc.01G265300' => 'tca', 'Thecc.01G265700' => 'tca', 'Thecc.03G109100' => 'tca', 'Thecc.04G245900' => 'tca', 'Thecc.04G246000' => 'tca', 'Thhalv10003334m.g' => 'esa', 'Thhalv10005508m.g' => 'esa', 'Thhalv10005643m.g' => 'esa', 'Thhalv10007316m.g' => 'esa', 'Thhalv10009006m.g' => 'esa', 'Thhalv10009309m.g' => 'esa', 'Thhalv10014917m.g' => 'esa', 'Thhalv10014919m.g' => 'esa', 'Thhalv10015393m.g' => 'esa', 'Thhalv10016515m.g' => 'esa', 'Thhalv10029242m.g' => 'esa', 'TPR.G16654' => 'tpr', 'TPR.G20589' => 'tpr', 'TPR.G23029' => 'tpr', 'TPR.G27731' => 'tpr', 'TPR.G28889' => 'tpr', 'TPR.G28899' => 'tpr', 'TPR.G30846' => 'tpr', 'TPR.G5452' => 'tpr', 'TPR.G5713' => 'tpr', 'TPR.G9046' => 'tpr', 'TPR.G9061' => 'tpr', 'TWI09G1075' => 'twi', 'TWI12G0806' => 'twi', 'TWI18G0108' => 'twi', 'TWI53G1361' => 'twi', 'TWI73G0185' => 'twi', 'TWI73G0427' => 'twi', 'unitig_37.g12001' => 'ugi', 'unitig_747.g21660' => 'ugi', 'unitig_748.g7232' => 'ugi', 'unitig_748.g7315' => 'ugi', 'unitig_85.g27262' => 'ugi', 'unitig_92.g28220' => 'ugi', 'vmacro02632' => 'vma', 'vmacro08410' => 'vma', 'vmacro08411' => 'vma', 'vmacro15407' => 'vma', 'VMungo0251G3619' => 'vmu', 'VMungo0720G1204' => 'vmu', 'VMungo0720G1918' => 'vmu', 'VMungo0720G2387' => 'vmu', 'VMungo0720G2961' => 'vmu', 'VMungo1215G2154' => 'vmu', 'VMungo1383G2411' => 'vmu', 'Zm00001eb051130' => 'zma', 'Zm00001eb116830' => 'zma', 'Zm00001eb116850' => 'zma', 'Zm00001eb151740' => 'zma', 'Zm00001eb292360' => 'zma', 'Zm00001eb301640' => 'zma' ), 'gf_id' => 'HOM05D000856', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000856' ), 'data_identifier' => 'HOM05D000856', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000856', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p00010' => 'bna', 'A03p04160' => 'bna', 'A03p17160' => 'bna', 'A04p23370' => 'bna', 'A05p14860' => 'bna', 'A08p37020' => 'bna', 'A09p08050' => 'bna', 'A09p66800' => 'bna', 'A09p67940' => 'bna', 'A10p02680' => 'bna', 'A10p05320' => 'bna', 'Aa31LG1G20560' => 'aar', 'Aa31LG1G20610' => 'aar', 'Aa31LG1G7810' => 'aar', 'Aa31LG5G3590' => 'aar', 'Aa31LG5G6140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3819' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4683' => 'aag', 'Actinidia04480' => 'ach', 'Actinidia05466' => 'ach', 'Actinidia08445' => 'ach', 'Actinidia21170' => 'ach', 'Actinidia24812' => 'ach', 'Actinidia24951' => 'ach', 'Actinidia40088' => 'ach', 'Ah.02g111660' => 'amhyb', 'Ah.11g048900' => 'amhyb', 'Ah.11g049910' => 'amhyb', 'AL1G13870' => 'aly', 'AL1G13880' => 'aly', 'AL1G16760' => 'aly', 'AL390U10020' => 'aly', 'AL4G25520' => 'aly', 'AL6G19890' => 'aly', 'AL6G19900' => 'aly', 'AL6G19910' => 'aly', 'AL8G40100' => 'aly', 'Aqoxy2G03562' => 'aox', 'Aqoxy5G00316' => 'aox', 'Aqoxy5G00926' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1628KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1H403S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2FU6SJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.882I6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8YRY2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YN1SN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AF70II' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZA8L1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F916KL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHRD8H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KTZ8QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S22EMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8M29T' => 'arhy', 'AT1G04270' => 'ath', 'AT1G04280' => 'ath', 'AT1G06750' => 'ath', 'AT1G33850' => 'ath', 'AT2G30630' => 'ath', 'AT5G09490' => 'ath', 'AT5G09500' => 'ath', 'AT5G09510' => 'ath', 'AT5G43640' => 'ath', 'AT5G63070' => 'ath', 'ATR0605G315' => 'atr', 'Atru.chr11.175' => 'acertr', 'Atru.chr11.653' => 'acertr', 'Atru.chr3.1616' => 'acertr', 'Atru.chr4.2230' => 'acertr', 'Atru.chr4.2232' => 'acertr', 'Atru.chr5.1598' => 'acertr', 'Atru.chr5.1600' => 'acertr', 'Atru.chr5.2188' => 'acertr', 'AUR62008326' => 'cqu', 'AUR62011922' => 'cqu', 'AUR62011924' => 'cqu', 'AUR62021771' => 'cqu', 'AUR62032237' => 'cqu', 'AUR62032240' => 'cqu', 'BcaB01g05572' => 'bca', 'BcaB02g10337' => 'bca', 'BcaB04g19944' => 'bca', 'BcaB05g21548' => 'bca', 'BcaB05g21549' => 'bca', 'BcaB05g23227' => 'bca', 'BcaB06g26256' => 'bca', 'BcaB06g26257' => 'bca', 'BcaB06g28379' => 'bca', 'BcaC02g11159' => 'bca', 'BcaC03g13258' => 'bca', 'BcaC03g13259' => 'bca', 'BcaC05g24456' => 'bca', 'BcaC05g24457' => 'bca', 'BcaC07g36922' => 'bca', 'BcaC07g36923' => 'bca', 'BcaC07g42050' => 'bca', 'BcaC07g42176' => 'bca', 'BcaC07g42195' => 'bca', 'BcaC07g42196' => 'bca', 'BcaNung06674' => 'bca', 'BolC2t06351H' => 'bol', 'BolC2t06352H' => 'bol', 'BolC3t12993H' => 'bol', 'BolC4t23525H' => 'bol', 'BolC4t27475H' => 'bol', 'BolC5t29025H' => 'bol', 'BolC5t29026H' => 'bol', 'BolC8t46898H' => 'bol', 'BolC8t46899H' => 'bol', 'BolC8t52630H' => 'bol', 'BolC8t52765H' => 'bol', 'BolC9t53824H' => 'bol', 'BraA03t09760Z' => 'bra', 'BraA03t10990Z' => 'bra', 'BraA05t20413Z' => 'bra', 'BraA08t35602Z' => 'bra', 'BraA09t36458Z' => 'bra', 'BraA09t42018Z' => 'bra', 'BraA09t42129Z' => 'bra', 'BraA10t42536Z' => 'bra', 'BraA10t42537Z' => 'bra', 'C01p10690' => 'bna', 'C02p03890' => 'bna', 'C02p03900' => 'bna', 'C03p04620' => 'bna', 'C04p19870' => 'bna', 'C04p59670' => 'bna', 'C05p02460' => 'bna', 'C05p02470' => 'bna', 'C08p00980' => 'bna', 'C08p00990' => 'bna', 'C08p51030' => 'bna', 'C08p52360' => 'bna', 'C09p09120' => 'bna', 'CAN.G19.15' => 'can', 'CAN.G251.10' => 'can', 'CAN.G251.9' => 'can', 'CAN.G398.24' => 'can', 'CAN.G410.32' => 'can', 'CAN.G881.2' => 'can', 'CANSAT01G3025' => 'cansat', 'CANSAT78G1211' => 'cansat', 'CANSAT78G1218' => 'cansat', 'CANSAT78G1521' => 'cansat', 'CANSAT78G1670' => 'cansat', 'CARHR003600' => 'chi', 'CARHR003610' => 'chi', 'CARHR006290' => 'chi', 'CARHR006430' => 'chi', 'CARHR124110' => 'chi', 'CARHR203870' => 'chi', 'CARHR203880' => 'chi', 'CARHR203890' => 'chi', 'CARHR276880' => 'chi', 'Carub.0001s0346' => 'cru', 'Carub.0001s0347' => 'cru', 'Carub.0001s0607' => 'cru', 'Carub.0003s2768' => 'cru', 'Carub.0003s2769' => 'cru', 'Carub.0004s1178' => 'cru', 'Carub.0006s0806' => 'cru', 'Carub.0006s0807' => 'cru', 'Carub.0006s0808' => 'cru', 'Carub.0008s0501' => 'cru', 'Carub.0008s2379' => 'cru', 'Ca_08655_v3' => 'car', 'Ca_08922_v3' => 'car', 'Ca_08923_v3' => 'car', 'Ca_09119_v3' => 'car', 'Ca_09703_v3' => 'car', 'Ca_09705_v3' => 'car', 'Ca_09835_v3' => 'car', 'Ca_26403_v3' => 'car', 'Ca_30719_v3' => 'car', 'CBR_g17958' => 'cbr', 'CBR_g40516' => 'cbr', 'Cc00_g05350' => 'ccan', 'Cc01_g18690' => 'ccan', 'Cc03_g04830' => 'ccan', 'Cc03_g04850' => 'ccan', 'CDE02G4469' => 'cde', 'CDE06G0883' => 'cde', 'CDE06G1295' => 'cde', 'CDE06G1390' => 'cde', 'CDE07G0584' => 'cde', 'CDE07G1084' => 'cde', 'CDE08G1259' => 'cde', 'Cfa002341' => 'cfa', 'Cfa024337' => 'cfa', 'Ciclev10004749m.g' => 'ccl', 'Ciclev10006127m.g' => 'ccl', 'Ciclev10019720m.g' => 'ccl', 'Ciclev10022652m.g' => 'ccl', 'CiPaw.01G190400' => 'cil', 'CiPaw.01G190500' => 'cil', 'CiPaw.02G116400' => 'cil', 'CiPaw.02G116500' => 'cil', 'CiPaw.04G183000' => 'cil', 'CiPaw.04G183300' => 'cil', 'ClCG05G004610' => 'cla', 'ClCG05G004620' => 'cla', 'ClCG06G006730' => 'cla', 'ClCG06G006740' => 'cla', 'ClCG11G003690' => 'cla', 'COL.COLO4_08276' => 'col', 'COL.COLO4_08277' => 'col', 'COL.COLO4_15787' => 'col', 'COL.COLO4_15789' => 'col', 'Cpa.g.c44815' => 'cpa', 'Cpa.g.sc52.144' => 'cpa', 'Cpa.g.sc58.46' => 'cpa', 'Cpa.g.sc58.47' => 'cpa', 'Cre08.g360900' => 'cre', 'CsaV3_2G013030' => 'csa', 'CsaV3_2G013050' => 'csa', 'CsaV3_2G015620' => 'csa', 'CsaV3_3G012590' => 'csa', 'CsaV3_3G012600' => 'csa', 'CSS0001641' => 'camsi', 'CSS0008310' => 'camsi', 'CSS0013011' => 'camsi', 'CSS0017147' => 'camsi', 'CSS0022970' => 'camsi', 'CSS0025655' => 'camsi', 'CSS0028665' => 'camsi', 'CSS0029117' => 'camsi', 'CSS0032024' => 'camsi', 'CSS0039681' => 'camsi', 'CSS0046516' => 'camsi', 'CSS0050307' => 'camsi', 'DCAR_005871' => 'dca', 'DCAR_007342' => 'dca', 'DCAR_024228' => 'dca', 'DCAR_027277' => 'dca', 'DCAR_030718' => 'dca', 'Dinv20287' => 'din', 'Dinv22461' => 'din', 'Dinv22464' => 'din', 'Dinv29912' => 'din', 'Dinv29913' => 'din', 'Dinv34580' => 'din', 'Dinv34582' => 'din', 'Dinv44632' => 'din', 'Duzib052G0266' => 'dzi', 'Duzib133G0907' => 'dzi', 'Duzib133G1034' => 'dzi', 'Duzib138G0207' => 'dzi', 'Duzib138G0491' => 'dzi', 'Duzib151G0812' => 'dzi', 'Duzib151G1166' => 'dzi', 'Duzib168G0192' => 'dzi', 'Duzib211G0077' => 'dzi', 'Duzib212G0429' => 'dzi', 'Duzib212G0472' => 'dzi', 'ECA233G2617' => 'eca', 'ECA236G4188' => 'eca', 'ECA240G0936' => 'eca', 'ECA240G1129' => 'eca', 'ECA247G0623' => 'eca', 'EL10Ac5g10451' => 'bvu', 'EL10Ac5g10453' => 'bvu', 'EL10Ac5g10894' => 'bvu', 'Eucgr.H00192' => 'egr', 'Eucgr.H00193' => 'egr', 'Eucgr.H00194' => 'egr', 'Eucgr.J01562' => 'egr', 'Eucgr.K03301' => 'egr', 'FAN02G0632' => 'fan', 'FAN05G5378' => 'fan', 'FAN09G3247' => 'fan', 'FAN12G0435' => 'fan', 'FAN12G2426' => 'fan', 'FAN14G1707' => 'fan', 'FAN14G4725' => 'fan', 'FAN15G2071' => 'fan', 'FAN17G3065' => 'fan', 'FAN19G1376' => 'fan', 'FAN20G0354' => 'fan', 'FAN20G2429' => 'fan', 'FAN20G2658' => 'fan', 'FAN24G2343' => 'fan', 'FAN27G2362' => 'fan', 'FAN28G1765' => 'fan', 'FvH4_1g16020' => 'fve', 'FvH4_2g04890' => 'fve', 'FvH4_2g22270' => 'fve', 'FvH4_4g02630' => 'fve', 'FvH4_4g02640' => 'fve', 'FvH4_6g02650' => 'fve', 'Glyma.02G140600' => 'gma', 'Glyma.03G159900' => 'gma', 'Glyma.05G234800' => 'gma', 'Glyma.07G269600' => 'gma', 'Glyma.08G042300' => 'gma', 'Glyma.10G033500' => 'gma', 'Glyma.10G185200' => 'gma', 'Glyma.17G004300' => 'gma', 'Glyma.19G161900' => 'gma', 'Glyma.20G205100' => 'gma', 'Glyma.20G205200' => 'gma', 'Gohir.A01G139101' => 'ghi', 'Gohir.A02G035600' => 'ghi', 'Gohir.A02G117901' => 'ghi', 'Gohir.A07G210100' => 'ghi', 'Gohir.A07G210200' => 'ghi', 'Gohir.A08G061100' => 'ghi', 'Gohir.A09G223000' => 'ghi', 'Gohir.A09G223100' => 'ghi', 'Gohir.A10G113900' => 'ghi', 'Gohir.A10G114000' => 'ghi', 'Gohir.D02G042300' => 'ghi', 'Gohir.D07G216100' => 'ghi', 'Gohir.D07G216200' => 'ghi', 'Gohir.D08G070400' => 'ghi', 'Gohir.D09G225000' => 'ghi', 'Gohir.D09G225100' => 'ghi', 'Gohir.D10G152300' => 'ghi', 'Gohir.D10G153200' => 'ghi', 'Gohir.D11G133701' => 'ghi', 'Gorai.004G074100' => 'gra', 'Gorai.005G046800' => 'gra', 'Gorai.006G246500' => 'gra', 'Gorai.006G246600' => 'gra', 'Gorai.007G142900' => 'gra', 'Gorai.011G171000' => 'gra', 'Gorai.011G171100' => 'gra', 'Gorai.013G104300' => 'gra', 'Gorai.013G104400' => 'gra', 'GSVIVG01000754001' => 'vvi', 'GSVIVG01000756001' => 'vvi', 'GSVIVG01010903001' => 'vvi', 'GSVIVG01017623001' => 'vvi', 'GSVIVG01018113001' => 'vvi', 'GSVIVG01018116001' => 'vvi', 'GSVIVG01018118001' => 'vvi', 'HanXRQChr03g0076211' => 'han', 'HanXRQChr03g0092431' => 'han', 'HanXRQChr03g0092441' => 'han', 'HanXRQChr03g0092591' => 'han', 'HanXRQChr03g0092671' => 'han', 'HanXRQChr03g0092681' => 'han', 'HanXRQChr03g0092691' => 'han', 'HanXRQChr03g0092701' => 'han', 'HanXRQChr03g0092721' => 'han', 'HanXRQChr03g0092731' => 'han', 'HanXRQChr04g0113681' => 'han', 'HanXRQChr10g0281371' => 'han', 'HanXRQChr11g0337141' => 'han', 'HanXRQChr13g0424521' => 'han', 'HanXRQChr13g0424531' => 'han', 'HanXRQChr13g0424541' => 'han', 'HanXRQChr16g0498221' => 'han', 'Haze_04377' => 'cav', 'Haze_11298' => 'cav', 'Haze_24547' => 'cav', 'Haze_24550' => 'cav', 'Haze_26587' => 'cav', 'Hma1.2p1_0650F.1_g195410' => 'hma', 'Hma1.2p1_0893F.1_g233470' => 'hma', 'HPP92_006508' => 'vpl', 'HPP92_024780' => 'vpl', 'Hund02688' => 'sun', 'Hund09380' => 'sun', 'Hund09381' => 'sun', 'Hund09832' => 'sun', 'Hund09833' => 'sun', 'Hund11351' => 'sun', 'Hund11513' => 'sun', 'Lalb_Chr06g0162591' => 'lal', 'Lalb_Chr06g0162601' => 'lal', 'Lalb_Chr06g0169321' => 'lal', 'Lalb_Chr09g0330951' => 'lal', 'Lalb_Chr16g0387631' => 'lal', 'Lalb_Chr21g0306241' => 'lal', 'Lalb_Chr25g0290051' => 'lal', 'Lalb_Chr25g0290061' => 'lal', 'Lalb_Chr25g0290071' => 'lal', 'Lj1g0003876' => 'lja', 'Lj1P1207T36' => 'lonja', 'Lj2C1156G12' => 'lonja', 'Lj3A793G39' => 'lonja', 'Lj3C580G2' => 'lonja', 'Lj3C780G2' => 'lonja', 'Lj3C780T4' => 'lonja', 'Lj3C793G9' => 'lonja', 'Lj4g0012960' => 'lja', 'Lj5g0021252' => 'lja', 'Lj5g0021484' => 'lja', 'Lj5g0024528' => 'lja', 'Lj6A399T12' => 'lonja', 'Lj6A656G65' => 'lonja', 'Lsat_1_v5_gn_3_125500' => 'lsa', 'Lsat_1_v5_gn_3_125540' => 'lsa', 'Lsat_1_v5_gn_5_72701' => 'lsa', 'Lsat_1_v5_gn_8_91560' => 'lsa', 'Lsat_1_v5_gn_9_9640' => 'lsa', 'Manes.01G200600' => 'mes', 'Manes.01G200700' => 'mes', 'Manes.03G168900' => 'mes', 'Manes.03G169000' => 'mes', 'Manes.05G085801' => 'mes', 'Manes.05G086200' => 'mes', 'Manes.15G036700' => 'mes', 'Manes.15G036900' => 'mes', 'Mapoly0004s0172' => 'mpo', 'Mapoly0023s0001' => 'mpo', 'Mapoly0142s0012' => 'mpo', 'MBI01_g32854_MAGBIO' => 'mbi', 'MBI11_g24427_MAGBIO' => 'mbi', 'MBI11_g47319_MAGBIO' => 'mbi', 'MCO01G433' => 'mco', 'MD00G1187800' => 'mdo', 'MD04G1226500' => 'mdo', 'MD05G1203900' => 'mdo', 'MD10G1191100' => 'mdo', 'MD12G1243500' => 'mdo', 'MD13G1207000' => 'mdo', 'MD13G1207100' => 'mdo', 'MD16G1208600' => 'mdo', 'Medtr1g050352' => 'mtr', 'Medtr1g070385' => 'mtr', 'Medtr1g070450' => 'mtr', 'Medtr1g075200' => 'mtr', 'Medtr1g075250' => 'mtr', 'Medtr1g075260' => 'mtr', 'Medtr1g475250' => 'mtr', 'Medtr4g075450' => 'mtr', 'Medtr7g096300' => 'mtr', 'Medtr8g105110' => 'mtr', 'MELO3C006470.2' => 'cme', 'MELO3C006471.2' => 'cme', 'MELO3C020772.2' => 'cme', 'MELO3C026780.2' => 'cme', 'MELO3C026781.2' => 'cme', 'Migut.D00390' => 'egut', 'Migut.G00435' => 'egut', 'Migut.G00436' => 'egut', 'Migut.G00718' => 'egut', 'MSTRG.21891' => 'ama', 'MSTRG.26910' => 'ama', 'MSTRG.4099' => 'ama', 'MSTRG.9925' => 'ama', 'Nitab4.5_0000165g0010' => 'nta', 'Nitab4.5_0000209g0180' => 'nta', 'Nitab4.5_0000244g0440' => 'nta', 'Nitab4.5_0000525g0220' => 'nta', 'Nitab4.5_0001597g0020' => 'nta', 'Nitab4.5_0001878g0040' => 'nta', 'Nitab4.5_0001878g0060' => 'nta', 'Nitab4.5_0002838g0100' => 'nta', 'Nitab4.5_0002838g0120' => 'nta', 'Nitab4.5_0004798g0030' => 'nta', 'Nitab4.5_0005420g0010' => 'nta', 'Nitab4.5_0005507g0010' => 'nta', 'Nitab4.5_0005574g0020' => 'nta', 'Nitab4.5_0005838g0010' => 'nta', 'Nitab4.5_0010580g0020' => 'nta', 'Nn1g02599' => 'nnu', 'Nn1g02608' => 'nnu', 'Nn3g17742' => 'nnu', 'Nn3g19534' => 'nnu', 'Nn3g19535' => 'nnu', 'Oeu008790.1' => 'oeu', 'Oeu008792.1' => 'oeu', 'Oeu032590.1' => 'oeu', 'Oeu035349.1' => 'oeu', 'Oeu049791.1' => 'oeu', 'Os01g0774500' => 'osa', 'Os03g0628800' => 'osa', 'Os03g0798600' => 'osa', 'Os05g0508800' => 'osa', 'Peaxi162Scf00036g02018' => 'pax', 'Peaxi162Scf00578g00032' => 'pax', 'Peaxi162Scf00578g00317' => 'pax', 'Peaxi162Scf00785g00114' => 'pax', 'Peaxi162Scf00813g00119' => 'pax', 'Peaxi162Scf00906g00227' => 'pax', 'PGR004G0875' => 'pgr', 'PGR004G2424' => 'pgr', 'PGR031G1239' => 'pgr', 'PGR031G2474' => 'pgr', 'PGR044G0423' => 'pgr', 'PGSC0003DMG400001128' => 'stu', 'PGSC0003DMG400007336' => 'stu', 'PGSC0003DMG400016318' => 'stu', 'PGSC0003DMG400016319' => 'stu', 'PGSC0003DMG400018074' => 'stu', 'Phvul.001G157700' => 'pvu', 'Phvul.002G148550' => 'pvu', 'Phvul.002G320200' => 'pvu', 'Phvul.003G089200' => 'pvu', 'Phvul.007G126000' => 'pvu', 'Phvul.007G126100' => 'pvu', 'Phvul.007G178000' => 'pvu', 'Phvul.007G178200' => 'pvu', 'Potri.002G043000' => 'ptr', 'Potri.002G043200' => 'ptr', 'Potri.003G123750' => 'ptr', 'Potri.005G055401' => 'ptr', 'Potri.005G219700' => 'ptr', 'Potri.005G220000' => 'ptr', 'Potri.008G161901' => 'ptr', 'Potri.008G162000' => 'ptr', 'Potri.008G162400' => 'ptr', 'Potri.010G076900' => 'ptr', 'Pp3c12_9180' => 'ppa', 'Pp3c13_19770' => 'ppa', 'Pp3c14_22950' => 'ppa', 'Pp3c16_12160' => 'ppa', 'Pp3c27_7820' => 'ppa', 'Pp3c2_3490' => 'ppa', 'Pp3c3_23700' => 'ppa', 'Pp3c3_36520' => 'ppa', 'Pp3c4_15250' => 'ppa', 'PRCOL_00007002' => 'pco', 'Prupe.1G030600' => 'ppe', 'Prupe.1G030700' => 'ppe', 'Prupe.6G345200' => 'ppe', 'Prupe.8G230300' => 'ppe', 'Prupe.8G230500' => 'ppe', 'Psat3g059600' => 'psa', 'Psat5g200920' => 'psa', 'Psat6g056440' => 'psa', 'Psat6g057360' => 'psa', 'Psat6g134120' => 'psa', 'Psat6g134160' => 'psa', 'Psat7g008640' => 'psa', 'Psat7g185240' => 'psa', 'PSO017G1330' => 'pso', 'PSO063G6097' => 'pso', 'PSO170G0835' => 'pso', 'PSO170G2499' => 'pso', 'PSO210G5058' => 'pso', 'PSO210G6154' => 'pso', 'PSO585G0031' => 'pso', 'PSO832G0264' => 'pso', 'PSO832G4288' => 'pso', 'QL03p027355' => 'qlo', 'QL03p027430' => 'qlo', 'QL04p081380' => 'qlo', 'QL06p015642' => 'qlo', 'QL06p015650' => 'qlo', 'QL06p015686' => 'qlo', 'QL12p042927' => 'qlo', 'QL93p1863_0035' => 'qlo', 'RcHm_v2.0_Chr3g0450581' => 'rch', 'RcHm_v2.0_Chr4g0390371' => 'rch', 'RcHm_v2.0_Chr4g0390381' => 'rch', 'RcHm_v2.0_Chr4g0390491' => 'rch', 'RcHm_v2.0_Chr4g0390501' => 'rch', 'RcHm_v2.0_Chr6g0289231' => 'rch', 'Rhsim04G0190400' => 'rsi', 'Rhsim04G0190500' => 'rsi', 'Rhsim04G0190600' => 'rsi', 'Rhsim13G0031400' => 'rsi', 'Rhsim13G0165600' => 'rsi', 'RhsimUnG0114600' => 'rsi', 'RhsimUnG0114700' => 'rsi', 'Sabra02G0034800' => 'sbr', 'Sabra02G0035100' => 'sbr', 'Sabra05G0168600' => 'sbr', 'Sabra05G0168800' => 'sbr', 'Sabra08G0123700' => 'sbr', 'Sabra10G0031900' => 'sbr', 'Sabra13G0039000' => 'sbr', 'SalBow2G0782' => 'sbo', 'SalBow2G1403' => 'sbo', 'SalBow4G0074' => 'sbo', 'SalBow4G2635' => 'sbo', 'SalBow5G3010' => 'sbo', 'Sc05g0000870' => 'sci', 'Sc05g0000890' => 'sci', 'Sc13g0005000' => 'sci', 'Sc13g0005030' => 'sci', 'Sc19g0003790' => 'sci', 'Sc19g0003800' => 'sci', 'Sed0003467' => 'sed', 'Sed0009355' => 'sed', 'Sed0009894' => 'sed', 'Sed0011972' => 'sed', 'Sed0021483' => 'sed', 'Sed0021750' => 'sed', 'Sed0026279' => 'sed', 'SEGI_05312' => 'sgi', 'SEGI_10112' => 'sgi', 'SEGI_15835' => 'sgi', 'SEGI_30386' => 'sgi', 'SEGI_34122' => 'sgi', 'SEGI_35063' => 'sgi', 'SGA_v2.0_scaffold101G29794' => 'sas', 'SGA_v2.0_scaffold1G00573' => 'sas', 'SGA_v2.0_scaffold79G25637' => 'sas', 'SGA_v2.0_scaffold88G27283' => 'sas', 'SGA_v2.0_scaffold88G27285' => 'sas', 'SGA_v2.0_scaffold88G27331' => 'sas', 'SHI09937' => 'shi', 'SMO119G0302' => 'smo', 'SMO137G0231' => 'smo', 'SMO367G1151' => 'smo', 'Solyc02g082000.3' => 'sly', 'Solyc06g031670.3' => 'sly', 'Solyc06g053810.3' => 'sly', 'Solyc07g025457.1' => 'sly', 'Solyc08g059740.1' => 'sly', 'Solyc08g059750.3' => 'sly', 'Solyc09g083370.3' => 'sly', 'Solyc12g038950.3' => 'sly', 'Sopen02g026630' => 'spe', 'Sopen06g018930' => 'spe', 'Sopen06g018940' => 'spe', 'Sopen08g009460' => 'spe', 'Sopen09g032290' => 'spe', 'Sp1g03080' => 'spa', 'Sp1g03090' => 'spa', 'Sp1g05480' => 'spa', 'Sp2g07860' => 'spa', 'Sp2g08430' => 'spa', 'Sp2g08440' => 'spa', 'Sp2g26200' => 'spa', 'Sp4g13170' => 'spa', 'Sp6g33840' => 'spa', 'SpUn1204_0010' => 'spa', 'TAR365G0908' => 'tar', 'TAR381G1270' => 'tar', 'TAR381G1651' => 'tar', 'TAR625G1131' => 'tar', 'TAR633G0962' => 'tar', 'TAR633G1729' => 'tar', 'TAR633G1864' => 'tar', 'TAR636G0221' => 'tar', 'TAR636G0314' => 'tar', 'TAR636G3202' => 'tar', 'THA.LOC104800805' => 'tha', 'THA.LOC104801096' => 'tha', 'THA.LOC104801555' => 'tha', 'THA.LOC104808491' => 'tha', 'THA.LOC104808595' => 'tha', 'THA.LOC104815985' => 'tha', 'THA.LOC104822250' => 'tha', 'THA.LOC104826071' => 'tha', 'Thecc.01G265200' => 'tca', 'Thecc.01G265300' => 'tca', 'Thecc.01G265700' => 'tca', 'Thecc.03G109100' => 'tca', 'Thecc.04G245900' => 'tca', 'Thecc.04G246000' => 'tca', 'Thhalv10003334m.g' => 'esa', 'Thhalv10005508m.g' => 'esa', 'Thhalv10005643m.g' => 'esa', 'Thhalv10007316m.g' => 'esa', 'Thhalv10009006m.g' => 'esa', 'Thhalv10009309m.g' => 'esa', 'Thhalv10014917m.g' => 'esa', 'Thhalv10014919m.g' => 'esa', 'Thhalv10015393m.g' => 'esa', 'Thhalv10016515m.g' => 'esa', 'Thhalv10029242m.g' => 'esa', 'TPR.G16654' => 'tpr', 'TPR.G20589' => 'tpr', 'TPR.G23029' => 'tpr', 'TPR.G27731' => 'tpr', 'TPR.G28889' => 'tpr', 'TPR.G28899' => 'tpr', 'TPR.G30846' => 'tpr', 'TPR.G5452' => 'tpr', 'TPR.G5713' => 'tpr', 'TPR.G9046' => 'tpr', 'TPR.G9061' => 'tpr', 'TWI09G1075' => 'twi', 'TWI12G0806' => 'twi', 'TWI18G0108' => 'twi', 'TWI53G1361' => 'twi', 'TWI73G0185' => 'twi', 'TWI73G0427' => 'twi', 'unitig_37.g12001' => 'ugi', 'unitig_747.g21660' => 'ugi', 'unitig_748.g7232' => 'ugi', 'unitig_748.g7315' => 'ugi', 'unitig_85.g27262' => 'ugi', 'unitig_92.g28220' => 'ugi', 'vmacro02632' => 'vma', 'vmacro08410' => 'vma', 'vmacro08411' => 'vma', 'vmacro15407' => 'vma', 'VMungo0251G3619' => 'vmu', 'VMungo0720G1204' => 'vmu', 'VMungo0720G1918' => 'vmu', 'VMungo0720G2387' => 'vmu', 'VMungo0720G2961' => 'vmu', 'VMungo1215G2154' => 'vmu', 'VMungo1383G2411' => 'vmu', 'Zm00001eb051130' => 'zma', 'Zm00001eb116830' => 'zma', 'Zm00001eb116850' => 'zma', 'Zm00001eb151740' => 'zma', 'Zm00001eb292360' => 'zma', 'Zm00001eb301640' => 'zma' ) $gf_id = 'HOM05D000856' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000856' ) $data_identifier = 'HOM05D000856' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 13, 'ath' => (int) 10, 'atr' => (int) 1, 'acertr' => (int) 8, 'cqu' => (int) 6, 'bca' => (int) 21, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 11, 'car' => (int) 9, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 8, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 5, 'fan' => (int) 16, 'fve' => (int) 6, 'gma' => (int) 11, 'ghi' => (int) 19, 'gra' => (int) 9, 'vvi' => (int) 7, 'han' => (int) 17, 'cav' => (int) 5, 'hma' => (int) 2, 'vpl' => (int) 2, 'sun' => (int) 7, 'lal' => (int) 9, 'lja' => (int) 5, 'lonja' => (int) 9, 'lsa' => (int) 5, 'mes' => (int) 8, 'mpo' => (int) 3, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 10, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 15, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 9, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 9, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 6, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 5, 'spa' => (int) 10, 'tar' => (int) 10, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 11, 'tpr' => (int) 11, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 4, 'vmu' => (int) 7, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb301640' $species_info = array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ) $local_species = 'mco' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000856', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p00010' => 'bna', 'A03p04160' => 'bna', 'A03p17160' => 'bna', 'A04p23370' => 'bna', 'A05p14860' => 'bna', 'A08p37020' => 'bna', 'A09p08050' => 'bna', 'A09p66800' => 'bna', 'A09p67940' => 'bna', 'A10p02680' => 'bna', 'A10p05320' => 'bna', 'Aa31LG1G20560' => 'aar', 'Aa31LG1G20610' => 'aar', 'Aa31LG1G7810' => 'aar', 'Aa31LG5G3590' => 'aar', 'Aa31LG5G6140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3819' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4683' => 'aag', 'Actinidia04480' => 'ach', 'Actinidia05466' => 'ach', 'Actinidia08445' => 'ach', 'Actinidia21170' => 'ach', 'Actinidia24812' => 'ach', 'Actinidia24951' => 'ach', 'Actinidia40088' => 'ach', 'Ah.02g111660' => 'amhyb', 'Ah.11g048900' => 'amhyb', 'Ah.11g049910' => 'amhyb', 'AL1G13870' => 'aly', 'AL1G13880' => 'aly', 'AL1G16760' => 'aly', 'AL390U10020' => 'aly', 'AL4G25520' => 'aly', 'AL6G19890' => 'aly', 'AL6G19900' => 'aly', 'AL6G19910' => 'aly', 'AL8G40100' => 'aly', 'Aqoxy2G03562' => 'aox', 'Aqoxy5G00316' => 'aox', 'Aqoxy5G00926' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1628KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1H403S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2FU6SJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.882I6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8YRY2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YN1SN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AF70II' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZA8L1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F916KL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHRD8H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KTZ8QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S22EMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8M29T' => 'arhy', 'AT1G04270' => 'ath', 'AT1G04280' => 'ath', 'AT1G06750' => 'ath', 'AT1G33850' => 'ath', 'AT2G30630' => 'ath', 'AT5G09490' => 'ath', 'AT5G09500' => 'ath', 'AT5G09510' => 'ath', 'AT5G43640' => 'ath', 'AT5G63070' => 'ath', 'ATR0605G315' => 'atr', 'Atru.chr11.175' => 'acertr', 'Atru.chr11.653' => 'acertr', 'Atru.chr3.1616' => 'acertr', 'Atru.chr4.2230' => 'acertr', 'Atru.chr4.2232' => 'acertr', 'Atru.chr5.1598' => 'acertr', 'Atru.chr5.1600' => 'acertr', 'Atru.chr5.2188' => 'acertr', 'AUR62008326' => 'cqu', 'AUR62011922' => 'cqu', 'AUR62011924' => 'cqu', 'AUR62021771' => 'cqu', 'AUR62032237' => 'cqu', 'AUR62032240' => 'cqu', 'BcaB01g05572' => 'bca', 'BcaB02g10337' => 'bca', 'BcaB04g19944' => 'bca', 'BcaB05g21548' => 'bca', 'BcaB05g21549' => 'bca', 'BcaB05g23227' => 'bca', 'BcaB06g26256' => 'bca', 'BcaB06g26257' => 'bca', 'BcaB06g28379' => 'bca', 'BcaC02g11159' => 'bca', 'BcaC03g13258' => 'bca', 'BcaC03g13259' => 'bca', 'BcaC05g24456' => 'bca', 'BcaC05g24457' => 'bca', 'BcaC07g36922' => 'bca', 'BcaC07g36923' => 'bca', 'BcaC07g42050' => 'bca', 'BcaC07g42176' => 'bca', 'BcaC07g42195' => 'bca', 'BcaC07g42196' => 'bca', 'BcaNung06674' => 'bca', 'BolC2t06351H' => 'bol', 'BolC2t06352H' => 'bol', 'BolC3t12993H' => 'bol', 'BolC4t23525H' => 'bol', 'BolC4t27475H' => 'bol', 'BolC5t29025H' => 'bol', 'BolC5t29026H' => 'bol', 'BolC8t46898H' => 'bol', 'BolC8t46899H' => 'bol', 'BolC8t52630H' => 'bol', 'BolC8t52765H' => 'bol', 'BolC9t53824H' => 'bol', 'BraA03t09760Z' => 'bra', 'BraA03t10990Z' => 'bra', 'BraA05t20413Z' => 'bra', 'BraA08t35602Z' => 'bra', 'BraA09t36458Z' => 'bra', 'BraA09t42018Z' => 'bra', 'BraA09t42129Z' => 'bra', 'BraA10t42536Z' => 'bra', 'BraA10t42537Z' => 'bra', 'C01p10690' => 'bna', 'C02p03890' => 'bna', 'C02p03900' => 'bna', 'C03p04620' => 'bna', 'C04p19870' => 'bna', 'C04p59670' => 'bna', 'C05p02460' => 'bna', 'C05p02470' => 'bna', 'C08p00980' => 'bna', 'C08p00990' => 'bna', 'C08p51030' => 'bna', 'C08p52360' => 'bna', 'C09p09120' => 'bna', 'CAN.G19.15' => 'can', 'CAN.G251.10' => 'can', 'CAN.G251.9' => 'can', 'CAN.G398.24' => 'can', 'CAN.G410.32' => 'can', 'CAN.G881.2' => 'can', 'CANSAT01G3025' => 'cansat', 'CANSAT78G1211' => 'cansat', 'CANSAT78G1218' => 'cansat', 'CANSAT78G1521' => 'cansat', 'CANSAT78G1670' => 'cansat', 'CARHR003600' => 'chi', 'CARHR003610' => 'chi', 'CARHR006290' => 'chi', 'CARHR006430' => 'chi', 'CARHR124110' => 'chi', 'CARHR203870' => 'chi', 'CARHR203880' => 'chi', 'CARHR203890' => 'chi', 'CARHR276880' => 'chi', 'Carub.0001s0346' => 'cru', 'Carub.0001s0347' => 'cru', 'Carub.0001s0607' => 'cru', 'Carub.0003s2768' => 'cru', 'Carub.0003s2769' => 'cru', 'Carub.0004s1178' => 'cru', 'Carub.0006s0806' => 'cru', 'Carub.0006s0807' => 'cru', 'Carub.0006s0808' => 'cru', 'Carub.0008s0501' => 'cru', 'Carub.0008s2379' => 'cru', 'Ca_08655_v3' => 'car', 'Ca_08922_v3' => 'car', 'Ca_08923_v3' => 'car', 'Ca_09119_v3' => 'car', 'Ca_09703_v3' => 'car', 'Ca_09705_v3' => 'car', 'Ca_09835_v3' => 'car', 'Ca_26403_v3' => 'car', 'Ca_30719_v3' => 'car', 'CBR_g17958' => 'cbr', 'CBR_g40516' => 'cbr', 'Cc00_g05350' => 'ccan', 'Cc01_g18690' => 'ccan', 'Cc03_g04830' => 'ccan', 'Cc03_g04850' => 'ccan', 'CDE02G4469' => 'cde', 'CDE06G0883' => 'cde', 'CDE06G1295' => 'cde', 'CDE06G1390' => 'cde', 'CDE07G0584' => 'cde', 'CDE07G1084' => 'cde', 'CDE08G1259' => 'cde', 'Cfa002341' => 'cfa', 'Cfa024337' => 'cfa', 'Ciclev10004749m.g' => 'ccl', 'Ciclev10006127m.g' => 'ccl', 'Ciclev10019720m.g' => 'ccl', 'Ciclev10022652m.g' => 'ccl', 'CiPaw.01G190400' => 'cil', 'CiPaw.01G190500' => 'cil', 'CiPaw.02G116400' => 'cil', 'CiPaw.02G116500' => 'cil', 'CiPaw.04G183000' => 'cil', 'CiPaw.04G183300' => 'cil', 'ClCG05G004610' => 'cla', 'ClCG05G004620' => 'cla', 'ClCG06G006730' => 'cla', 'ClCG06G006740' => 'cla', 'ClCG11G003690' => 'cla', 'COL.COLO4_08276' => 'col', 'COL.COLO4_08277' => 'col', 'COL.COLO4_15787' => 'col', 'COL.COLO4_15789' => 'col', 'Cpa.g.c44815' => 'cpa', 'Cpa.g.sc52.144' => 'cpa', 'Cpa.g.sc58.46' => 'cpa', 'Cpa.g.sc58.47' => 'cpa', 'Cre08.g360900' => 'cre', 'CsaV3_2G013030' => 'csa', 'CsaV3_2G013050' => 'csa', 'CsaV3_2G015620' => 'csa', 'CsaV3_3G012590' => 'csa', 'CsaV3_3G012600' => 'csa', 'CSS0001641' => 'camsi', 'CSS0008310' => 'camsi', 'CSS0013011' => 'camsi', 'CSS0017147' => 'camsi', 'CSS0022970' => 'camsi', 'CSS0025655' => 'camsi', 'CSS0028665' => 'camsi', 'CSS0029117' => 'camsi', 'CSS0032024' => 'camsi', 'CSS0039681' => 'camsi', 'CSS0046516' => 'camsi', 'CSS0050307' => 'camsi', 'DCAR_005871' => 'dca', 'DCAR_007342' => 'dca', 'DCAR_024228' => 'dca', 'DCAR_027277' => 'dca', 'DCAR_030718' => 'dca', 'Dinv20287' => 'din', 'Dinv22461' => 'din', 'Dinv22464' => 'din', 'Dinv29912' => 'din', 'Dinv29913' => 'din', 'Dinv34580' => 'din', 'Dinv34582' => 'din', 'Dinv44632' => 'din', 'Duzib052G0266' => 'dzi', 'Duzib133G0907' => 'dzi', 'Duzib133G1034' => 'dzi', 'Duzib138G0207' => 'dzi', 'Duzib138G0491' => 'dzi', 'Duzib151G0812' => 'dzi', 'Duzib151G1166' => 'dzi', 'Duzib168G0192' => 'dzi', 'Duzib211G0077' => 'dzi', 'Duzib212G0429' => 'dzi', 'Duzib212G0472' => 'dzi', 'ECA233G2617' => 'eca', 'ECA236G4188' => 'eca', 'ECA240G0936' => 'eca', 'ECA240G1129' => 'eca', 'ECA247G0623' => 'eca', 'EL10Ac5g10451' => 'bvu', 'EL10Ac5g10453' => 'bvu', 'EL10Ac5g10894' => 'bvu', 'Eucgr.H00192' => 'egr', 'Eucgr.H00193' => 'egr', 'Eucgr.H00194' => 'egr', 'Eucgr.J01562' => 'egr', 'Eucgr.K03301' => 'egr', 'FAN02G0632' => 'fan', 'FAN05G5378' => 'fan', 'FAN09G3247' => 'fan', 'FAN12G0435' => 'fan', 'FAN12G2426' => 'fan', 'FAN14G1707' => 'fan', 'FAN14G4725' => 'fan', 'FAN15G2071' => 'fan', 'FAN17G3065' => 'fan', 'FAN19G1376' => 'fan', 'FAN20G0354' => 'fan', 'FAN20G2429' => 'fan', 'FAN20G2658' => 'fan', 'FAN24G2343' => 'fan', 'FAN27G2362' => 'fan', 'FAN28G1765' => 'fan', 'FvH4_1g16020' => 'fve', 'FvH4_2g04890' => 'fve', 'FvH4_2g22270' => 'fve', 'FvH4_4g02630' => 'fve', 'FvH4_4g02640' => 'fve', 'FvH4_6g02650' => 'fve', 'Glyma.02G140600' => 'gma', 'Glyma.03G159900' => 'gma', 'Glyma.05G234800' => 'gma', 'Glyma.07G269600' => 'gma', 'Glyma.08G042300' => 'gma', 'Glyma.10G033500' => 'gma', 'Glyma.10G185200' => 'gma', 'Glyma.17G004300' => 'gma', 'Glyma.19G161900' => 'gma', 'Glyma.20G205100' => 'gma', 'Glyma.20G205200' => 'gma', 'Gohir.A01G139101' => 'ghi', 'Gohir.A02G035600' => 'ghi', 'Gohir.A02G117901' => 'ghi', 'Gohir.A07G210100' => 'ghi', 'Gohir.A07G210200' => 'ghi', 'Gohir.A08G061100' => 'ghi', 'Gohir.A09G223000' => 'ghi', 'Gohir.A09G223100' => 'ghi', 'Gohir.A10G113900' => 'ghi', 'Gohir.A10G114000' => 'ghi', 'Gohir.D02G042300' => 'ghi', 'Gohir.D07G216100' => 'ghi', 'Gohir.D07G216200' => 'ghi', 'Gohir.D08G070400' => 'ghi', 'Gohir.D09G225000' => 'ghi', 'Gohir.D09G225100' => 'ghi', 'Gohir.D10G152300' => 'ghi', 'Gohir.D10G153200' => 'ghi', 'Gohir.D11G133701' => 'ghi', 'Gorai.004G074100' => 'gra', 'Gorai.005G046800' => 'gra', 'Gorai.006G246500' => 'gra', 'Gorai.006G246600' => 'gra', 'Gorai.007G142900' => 'gra', 'Gorai.011G171000' => 'gra', 'Gorai.011G171100' => 'gra', 'Gorai.013G104300' => 'gra', 'Gorai.013G104400' => 'gra', 'GSVIVG01000754001' => 'vvi', 'GSVIVG01000756001' => 'vvi', 'GSVIVG01010903001' => 'vvi', 'GSVIVG01017623001' => 'vvi', 'GSVIVG01018113001' => 'vvi', 'GSVIVG01018116001' => 'vvi', 'GSVIVG01018118001' => 'vvi', 'HanXRQChr03g0076211' => 'han', 'HanXRQChr03g0092431' => 'han', 'HanXRQChr03g0092441' => 'han', 'HanXRQChr03g0092591' => 'han', 'HanXRQChr03g0092671' => 'han', 'HanXRQChr03g0092681' => 'han', 'HanXRQChr03g0092691' => 'han', 'HanXRQChr03g0092701' => 'han', 'HanXRQChr03g0092721' => 'han', 'HanXRQChr03g0092731' => 'han', 'HanXRQChr04g0113681' => 'han', 'HanXRQChr10g0281371' => 'han', 'HanXRQChr11g0337141' => 'han', 'HanXRQChr13g0424521' => 'han', 'HanXRQChr13g0424531' => 'han', 'HanXRQChr13g0424541' => 'han', 'HanXRQChr16g0498221' => 'han', 'Haze_04377' => 'cav', 'Haze_11298' => 'cav', 'Haze_24547' => 'cav', 'Haze_24550' => 'cav', 'Haze_26587' => 'cav', 'Hma1.2p1_0650F.1_g195410' => 'hma', 'Hma1.2p1_0893F.1_g233470' => 'hma', 'HPP92_006508' => 'vpl', 'HPP92_024780' => 'vpl', 'Hund02688' => 'sun', 'Hund09380' => 'sun', 'Hund09381' => 'sun', 'Hund09832' => 'sun', 'Hund09833' => 'sun', 'Hund11351' => 'sun', 'Hund11513' => 'sun', 'Lalb_Chr06g0162591' => 'lal', 'Lalb_Chr06g0162601' => 'lal', 'Lalb_Chr06g0169321' => 'lal', 'Lalb_Chr09g0330951' => 'lal', 'Lalb_Chr16g0387631' => 'lal', 'Lalb_Chr21g0306241' => 'lal', 'Lalb_Chr25g0290051' => 'lal', 'Lalb_Chr25g0290061' => 'lal', 'Lalb_Chr25g0290071' => 'lal', 'Lj1g0003876' => 'lja', 'Lj1P1207T36' => 'lonja', 'Lj2C1156G12' => 'lonja', 'Lj3A793G39' => 'lonja', 'Lj3C580G2' => 'lonja', 'Lj3C780G2' => 'lonja', 'Lj3C780T4' => 'lonja', 'Lj3C793G9' => 'lonja', 'Lj4g0012960' => 'lja', 'Lj5g0021252' => 'lja', 'Lj5g0021484' => 'lja', 'Lj5g0024528' => 'lja', 'Lj6A399T12' => 'lonja', 'Lj6A656G65' => 'lonja', 'Lsat_1_v5_gn_3_125500' => 'lsa', 'Lsat_1_v5_gn_3_125540' => 'lsa', 'Lsat_1_v5_gn_5_72701' => 'lsa', 'Lsat_1_v5_gn_8_91560' => 'lsa', 'Lsat_1_v5_gn_9_9640' => 'lsa', 'Manes.01G200600' => 'mes', 'Manes.01G200700' => 'mes', 'Manes.03G168900' => 'mes', 'Manes.03G169000' => 'mes', 'Manes.05G085801' => 'mes', 'Manes.05G086200' => 'mes', 'Manes.15G036700' => 'mes', 'Manes.15G036900' => 'mes', 'Mapoly0004s0172' => 'mpo', 'Mapoly0023s0001' => 'mpo', 'Mapoly0142s0012' => 'mpo', 'MBI01_g32854_MAGBIO' => 'mbi', 'MBI11_g24427_MAGBIO' => 'mbi', 'MBI11_g47319_MAGBIO' => 'mbi', 'MCO01G433' => 'mco', 'MD00G1187800' => 'mdo', 'MD04G1226500' => 'mdo', 'MD05G1203900' => 'mdo', 'MD10G1191100' => 'mdo', 'MD12G1243500' => 'mdo', 'MD13G1207000' => 'mdo', 'MD13G1207100' => 'mdo', 'MD16G1208600' => 'mdo', 'Medtr1g050352' => 'mtr', 'Medtr1g070385' => 'mtr', 'Medtr1g070450' => 'mtr', 'Medtr1g075200' => 'mtr', 'Medtr1g075250' => 'mtr', 'Medtr1g075260' => 'mtr', 'Medtr1g475250' => 'mtr', 'Medtr4g075450' => 'mtr', 'Medtr7g096300' => 'mtr', 'Medtr8g105110' => 'mtr', 'MELO3C006470.2' => 'cme', 'MELO3C006471.2' => 'cme', 'MELO3C020772.2' => 'cme', 'MELO3C026780.2' => 'cme', 'MELO3C026781.2' => 'cme', 'Migut.D00390' => 'egut', 'Migut.G00435' => 'egut', 'Migut.G00436' => 'egut', 'Migut.G00718' => 'egut', 'MSTRG.21891' => 'ama', 'MSTRG.26910' => 'ama', 'MSTRG.4099' => 'ama', 'MSTRG.9925' => 'ama', 'Nitab4.5_0000165g0010' => 'nta', 'Nitab4.5_0000209g0180' => 'nta', 'Nitab4.5_0000244g0440' => 'nta', 'Nitab4.5_0000525g0220' => 'nta', 'Nitab4.5_0001597g0020' => 'nta', 'Nitab4.5_0001878g0040' => 'nta', 'Nitab4.5_0001878g0060' => 'nta', 'Nitab4.5_0002838g0100' => 'nta', 'Nitab4.5_0002838g0120' => 'nta', 'Nitab4.5_0004798g0030' => 'nta', 'Nitab4.5_0005420g0010' => 'nta', 'Nitab4.5_0005507g0010' => 'nta', 'Nitab4.5_0005574g0020' => 'nta', 'Nitab4.5_0005838g0010' => 'nta', 'Nitab4.5_0010580g0020' => 'nta', 'Nn1g02599' => 'nnu', 'Nn1g02608' => 'nnu', 'Nn3g17742' => 'nnu', 'Nn3g19534' => 'nnu', 'Nn3g19535' => 'nnu', 'Oeu008790.1' => 'oeu', 'Oeu008792.1' => 'oeu', 'Oeu032590.1' => 'oeu', 'Oeu035349.1' => 'oeu', 'Oeu049791.1' => 'oeu', 'Os01g0774500' => 'osa', 'Os03g0628800' => 'osa', 'Os03g0798600' => 'osa', 'Os05g0508800' => 'osa', 'Peaxi162Scf00036g02018' => 'pax', 'Peaxi162Scf00578g00032' => 'pax', 'Peaxi162Scf00578g00317' => 'pax', 'Peaxi162Scf00785g00114' => 'pax', 'Peaxi162Scf00813g00119' => 'pax', 'Peaxi162Scf00906g00227' => 'pax', 'PGR004G0875' => 'pgr', 'PGR004G2424' => 'pgr', 'PGR031G1239' => 'pgr', 'PGR031G2474' => 'pgr', 'PGR044G0423' => 'pgr', 'PGSC0003DMG400001128' => 'stu', 'PGSC0003DMG400007336' => 'stu', 'PGSC0003DMG400016318' => 'stu', 'PGSC0003DMG400016319' => 'stu', 'PGSC0003DMG400018074' => 'stu', 'Phvul.001G157700' => 'pvu', 'Phvul.002G148550' => 'pvu', 'Phvul.002G320200' => 'pvu', 'Phvul.003G089200' => 'pvu', 'Phvul.007G126000' => 'pvu', 'Phvul.007G126100' => 'pvu', 'Phvul.007G178000' => 'pvu', 'Phvul.007G178200' => 'pvu', 'Potri.002G043000' => 'ptr', 'Potri.002G043200' => 'ptr', 'Potri.003G123750' => 'ptr', 'Potri.005G055401' => 'ptr', 'Potri.005G219700' => 'ptr', 'Potri.005G220000' => 'ptr', 'Potri.008G161901' => 'ptr', 'Potri.008G162000' => 'ptr', 'Potri.008G162400' => 'ptr', 'Potri.010G076900' => 'ptr', 'Pp3c12_9180' => 'ppa', 'Pp3c13_19770' => 'ppa', 'Pp3c14_22950' => 'ppa', 'Pp3c16_12160' => 'ppa', 'Pp3c27_7820' => 'ppa', 'Pp3c2_3490' => 'ppa', 'Pp3c3_23700' => 'ppa', 'Pp3c3_36520' => 'ppa', 'Pp3c4_15250' => 'ppa', 'PRCOL_00007002' => 'pco', 'Prupe.1G030600' => 'ppe', 'Prupe.1G030700' => 'ppe', 'Prupe.6G345200' => 'ppe', 'Prupe.8G230300' => 'ppe', 'Prupe.8G230500' => 'ppe', 'Psat3g059600' => 'psa', 'Psat5g200920' => 'psa', 'Psat6g056440' => 'psa', 'Psat6g057360' => 'psa', 'Psat6g134120' => 'psa', 'Psat6g134160' => 'psa', 'Psat7g008640' => 'psa', 'Psat7g185240' => 'psa', 'PSO017G1330' => 'pso', 'PSO063G6097' => 'pso', 'PSO170G0835' => 'pso', 'PSO170G2499' => 'pso', 'PSO210G5058' => 'pso', 'PSO210G6154' => 'pso', 'PSO585G0031' => 'pso', 'PSO832G0264' => 'pso', 'PSO832G4288' => 'pso', 'QL03p027355' => 'qlo', 'QL03p027430' => 'qlo', 'QL04p081380' => 'qlo', 'QL06p015642' => 'qlo', 'QL06p015650' => 'qlo', 'QL06p015686' => 'qlo', 'QL12p042927' => 'qlo', 'QL93p1863_0035' => 'qlo', 'RcHm_v2.0_Chr3g0450581' => 'rch', 'RcHm_v2.0_Chr4g0390371' => 'rch', 'RcHm_v2.0_Chr4g0390381' => 'rch', 'RcHm_v2.0_Chr4g0390491' => 'rch', 'RcHm_v2.0_Chr4g0390501' => 'rch', 'RcHm_v2.0_Chr6g0289231' => 'rch', 'Rhsim04G0190400' => 'rsi', 'Rhsim04G0190500' => 'rsi', 'Rhsim04G0190600' => 'rsi', 'Rhsim13G0031400' => 'rsi', 'Rhsim13G0165600' => 'rsi', 'RhsimUnG0114600' => 'rsi', 'RhsimUnG0114700' => 'rsi', 'Sabra02G0034800' => 'sbr', 'Sabra02G0035100' => 'sbr', 'Sabra05G0168600' => 'sbr', 'Sabra05G0168800' => 'sbr', 'Sabra08G0123700' => 'sbr', 'Sabra10G0031900' => 'sbr', 'Sabra13G0039000' => 'sbr', 'SalBow2G0782' => 'sbo', 'SalBow2G1403' => 'sbo', 'SalBow4G0074' => 'sbo', 'SalBow4G2635' => 'sbo', 'SalBow5G3010' => 'sbo', 'Sc05g0000870' => 'sci', 'Sc05g0000890' => 'sci', 'Sc13g0005000' => 'sci', 'Sc13g0005030' => 'sci', 'Sc19g0003790' => 'sci', 'Sc19g0003800' => 'sci', 'Sed0003467' => 'sed', 'Sed0009355' => 'sed', 'Sed0009894' => 'sed', 'Sed0011972' => 'sed', 'Sed0021483' => 'sed', 'Sed0021750' => 'sed', 'Sed0026279' => 'sed', 'SEGI_05312' => 'sgi', 'SEGI_10112' => 'sgi', 'SEGI_15835' => 'sgi', 'SEGI_30386' => 'sgi', 'SEGI_34122' => 'sgi', 'SEGI_35063' => 'sgi', 'SGA_v2.0_scaffold101G29794' => 'sas', 'SGA_v2.0_scaffold1G00573' => 'sas', 'SGA_v2.0_scaffold79G25637' => 'sas', 'SGA_v2.0_scaffold88G27283' => 'sas', 'SGA_v2.0_scaffold88G27285' => 'sas', 'SGA_v2.0_scaffold88G27331' => 'sas', 'SHI09937' => 'shi', 'SMO119G0302' => 'smo', 'SMO137G0231' => 'smo', 'SMO367G1151' => 'smo', 'Solyc02g082000.3' => 'sly', 'Solyc06g031670.3' => 'sly', 'Solyc06g053810.3' => 'sly', 'Solyc07g025457.1' => 'sly', 'Solyc08g059740.1' => 'sly', 'Solyc08g059750.3' => 'sly', 'Solyc09g083370.3' => 'sly', 'Solyc12g038950.3' => 'sly', 'Sopen02g026630' => 'spe', 'Sopen06g018930' => 'spe', 'Sopen06g018940' => 'spe', 'Sopen08g009460' => 'spe', 'Sopen09g032290' => 'spe', 'Sp1g03080' => 'spa', 'Sp1g03090' => 'spa', 'Sp1g05480' => 'spa', 'Sp2g07860' => 'spa', 'Sp2g08430' => 'spa', 'Sp2g08440' => 'spa', 'Sp2g26200' => 'spa', 'Sp4g13170' => 'spa', 'Sp6g33840' => 'spa', 'SpUn1204_0010' => 'spa', 'TAR365G0908' => 'tar', 'TAR381G1270' => 'tar', 'TAR381G1651' => 'tar', 'TAR625G1131' => 'tar', 'TAR633G0962' => 'tar', 'TAR633G1729' => 'tar', 'TAR633G1864' => 'tar', 'TAR636G0221' => 'tar', 'TAR636G0314' => 'tar', 'TAR636G3202' => 'tar', 'THA.LOC104800805' => 'tha', 'THA.LOC104801096' => 'tha', 'THA.LOC104801555' => 'tha', 'THA.LOC104808491' => 'tha', 'THA.LOC104808595' => 'tha', 'THA.LOC104815985' => 'tha', 'THA.LOC104822250' => 'tha', 'THA.LOC104826071' => 'tha', 'Thecc.01G265200' => 'tca', 'Thecc.01G265300' => 'tca', 'Thecc.01G265700' => 'tca', 'Thecc.03G109100' => 'tca', 'Thecc.04G245900' => 'tca', 'Thecc.04G246000' => 'tca', 'Thhalv10003334m.g' => 'esa', 'Thhalv10005508m.g' => 'esa', 'Thhalv10005643m.g' => 'esa', 'Thhalv10007316m.g' => 'esa', 'Thhalv10009006m.g' => 'esa', 'Thhalv10009309m.g' => 'esa', 'Thhalv10014917m.g' => 'esa', 'Thhalv10014919m.g' => 'esa', 'Thhalv10015393m.g' => 'esa', 'Thhalv10016515m.g' => 'esa', 'Thhalv10029242m.g' => 'esa', 'TPR.G16654' => 'tpr', 'TPR.G20589' => 'tpr', 'TPR.G23029' => 'tpr', 'TPR.G27731' => 'tpr', 'TPR.G28889' => 'tpr', 'TPR.G28899' => 'tpr', 'TPR.G30846' => 'tpr', 'TPR.G5452' => 'tpr', 'TPR.G5713' => 'tpr', 'TPR.G9046' => 'tpr', 'TPR.G9061' => 'tpr', 'TWI09G1075' => 'twi', 'TWI12G0806' => 'twi', 'TWI18G0108' => 'twi', 'TWI53G1361' => 'twi', 'TWI73G0185' => 'twi', 'TWI73G0427' => 'twi', 'unitig_37.g12001' => 'ugi', 'unitig_747.g21660' => 'ugi', 'unitig_748.g7232' => 'ugi', 'unitig_748.g7315' => 'ugi', 'unitig_85.g27262' => 'ugi', 'unitig_92.g28220' => 'ugi', 'vmacro02632' => 'vma', 'vmacro08410' => 'vma', 'vmacro08411' => 'vma', 'vmacro15407' => 'vma', 'VMungo0251G3619' => 'vmu', 'VMungo0720G1204' => 'vmu', 'VMungo0720G1918' => 'vmu', 'VMungo0720G2387' => 'vmu', 'VMungo0720G2961' => 'vmu', 'VMungo1215G2154' => 'vmu', 'VMungo1383G2411' => 'vmu', 'Zm00001eb051130' => 'zma', 'Zm00001eb116830' => 'zma', 'Zm00001eb116850' => 'zma', 'Zm00001eb151740' => 'zma', 'Zm00001eb292360' => 'zma', 'Zm00001eb301640' => 'zma' ), 'gf_id' => 'HOM05D000856', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000856' ), 'data_identifier' => 'HOM05D000856', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000856', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p00010' => 'bna', 'A03p04160' => 'bna', 'A03p17160' => 'bna', 'A04p23370' => 'bna', 'A05p14860' => 'bna', 'A08p37020' => 'bna', 'A09p08050' => 'bna', 'A09p66800' => 'bna', 'A09p67940' => 'bna', 'A10p02680' => 'bna', 'A10p05320' => 'bna', 'Aa31LG1G20560' => 'aar', 'Aa31LG1G20610' => 'aar', 'Aa31LG1G7810' => 'aar', 'Aa31LG5G3590' => 'aar', 'Aa31LG5G6140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3819' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4683' => 'aag', 'Actinidia04480' => 'ach', 'Actinidia05466' => 'ach', 'Actinidia08445' => 'ach', 'Actinidia21170' => 'ach', 'Actinidia24812' => 'ach', 'Actinidia24951' => 'ach', 'Actinidia40088' => 'ach', 'Ah.02g111660' => 'amhyb', 'Ah.11g048900' => 'amhyb', 'Ah.11g049910' => 'amhyb', 'AL1G13870' => 'aly', 'AL1G13880' => 'aly', 'AL1G16760' => 'aly', 'AL390U10020' => 'aly', 'AL4G25520' => 'aly', 'AL6G19890' => 'aly', 'AL6G19900' => 'aly', 'AL6G19910' => 'aly', 'AL8G40100' => 'aly', 'Aqoxy2G03562' => 'aox', 'Aqoxy5G00316' => 'aox', 'Aqoxy5G00926' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1628KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1H403S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2FU6SJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.882I6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8YRY2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YN1SN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AF70II' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZA8L1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F916KL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHRD8H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KTZ8QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S22EMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8M29T' => 'arhy', 'AT1G04270' => 'ath', 'AT1G04280' => 'ath', 'AT1G06750' => 'ath', 'AT1G33850' => 'ath', 'AT2G30630' => 'ath', 'AT5G09490' => 'ath', 'AT5G09500' => 'ath', 'AT5G09510' => 'ath', 'AT5G43640' => 'ath', 'AT5G63070' => 'ath', 'ATR0605G315' => 'atr', 'Atru.chr11.175' => 'acertr', 'Atru.chr11.653' => 'acertr', 'Atru.chr3.1616' => 'acertr', 'Atru.chr4.2230' => 'acertr', 'Atru.chr4.2232' => 'acertr', 'Atru.chr5.1598' => 'acertr', 'Atru.chr5.1600' => 'acertr', 'Atru.chr5.2188' => 'acertr', 'AUR62008326' => 'cqu', 'AUR62011922' => 'cqu', 'AUR62011924' => 'cqu', 'AUR62021771' => 'cqu', 'AUR62032237' => 'cqu', 'AUR62032240' => 'cqu', 'BcaB01g05572' => 'bca', 'BcaB02g10337' => 'bca', 'BcaB04g19944' => 'bca', 'BcaB05g21548' => 'bca', 'BcaB05g21549' => 'bca', 'BcaB05g23227' => 'bca', 'BcaB06g26256' => 'bca', 'BcaB06g26257' => 'bca', 'BcaB06g28379' => 'bca', 'BcaC02g11159' => 'bca', 'BcaC03g13258' => 'bca', 'BcaC03g13259' => 'bca', 'BcaC05g24456' => 'bca', 'BcaC05g24457' => 'bca', 'BcaC07g36922' => 'bca', 'BcaC07g36923' => 'bca', 'BcaC07g42050' => 'bca', 'BcaC07g42176' => 'bca', 'BcaC07g42195' => 'bca', 'BcaC07g42196' => 'bca', 'BcaNung06674' => 'bca', 'BolC2t06351H' => 'bol', 'BolC2t06352H' => 'bol', 'BolC3t12993H' => 'bol', 'BolC4t23525H' => 'bol', 'BolC4t27475H' => 'bol', 'BolC5t29025H' => 'bol', 'BolC5t29026H' => 'bol', 'BolC8t46898H' => 'bol', 'BolC8t46899H' => 'bol', 'BolC8t52630H' => 'bol', 'BolC8t52765H' => 'bol', 'BolC9t53824H' => 'bol', 'BraA03t09760Z' => 'bra', 'BraA03t10990Z' => 'bra', 'BraA05t20413Z' => 'bra', 'BraA08t35602Z' => 'bra', 'BraA09t36458Z' => 'bra', 'BraA09t42018Z' => 'bra', 'BraA09t42129Z' => 'bra', 'BraA10t42536Z' => 'bra', 'BraA10t42537Z' => 'bra', 'C01p10690' => 'bna', 'C02p03890' => 'bna', 'C02p03900' => 'bna', 'C03p04620' => 'bna', 'C04p19870' => 'bna', 'C04p59670' => 'bna', 'C05p02460' => 'bna', 'C05p02470' => 'bna', 'C08p00980' => 'bna', 'C08p00990' => 'bna', 'C08p51030' => 'bna', 'C08p52360' => 'bna', 'C09p09120' => 'bna', 'CAN.G19.15' => 'can', 'CAN.G251.10' => 'can', 'CAN.G251.9' => 'can', 'CAN.G398.24' => 'can', 'CAN.G410.32' => 'can', 'CAN.G881.2' => 'can', 'CANSAT01G3025' => 'cansat', 'CANSAT78G1211' => 'cansat', 'CANSAT78G1218' => 'cansat', 'CANSAT78G1521' => 'cansat', 'CANSAT78G1670' => 'cansat', 'CARHR003600' => 'chi', 'CARHR003610' => 'chi', 'CARHR006290' => 'chi', 'CARHR006430' => 'chi', 'CARHR124110' => 'chi', 'CARHR203870' => 'chi', 'CARHR203880' => 'chi', 'CARHR203890' => 'chi', 'CARHR276880' => 'chi', 'Carub.0001s0346' => 'cru', 'Carub.0001s0347' => 'cru', 'Carub.0001s0607' => 'cru', 'Carub.0003s2768' => 'cru', 'Carub.0003s2769' => 'cru', 'Carub.0004s1178' => 'cru', 'Carub.0006s0806' => 'cru', 'Carub.0006s0807' => 'cru', 'Carub.0006s0808' => 'cru', 'Carub.0008s0501' => 'cru', 'Carub.0008s2379' => 'cru', 'Ca_08655_v3' => 'car', 'Ca_08922_v3' => 'car', 'Ca_08923_v3' => 'car', 'Ca_09119_v3' => 'car', 'Ca_09703_v3' => 'car', 'Ca_09705_v3' => 'car', 'Ca_09835_v3' => 'car', 'Ca_26403_v3' => 'car', 'Ca_30719_v3' => 'car', 'CBR_g17958' => 'cbr', 'CBR_g40516' => 'cbr', 'Cc00_g05350' => 'ccan', 'Cc01_g18690' => 'ccan', 'Cc03_g04830' => 'ccan', 'Cc03_g04850' => 'ccan', 'CDE02G4469' => 'cde', 'CDE06G0883' => 'cde', 'CDE06G1295' => 'cde', 'CDE06G1390' => 'cde', 'CDE07G0584' => 'cde', 'CDE07G1084' => 'cde', 'CDE08G1259' => 'cde', 'Cfa002341' => 'cfa', 'Cfa024337' => 'cfa', 'Ciclev10004749m.g' => 'ccl', 'Ciclev10006127m.g' => 'ccl', 'Ciclev10019720m.g' => 'ccl', 'Ciclev10022652m.g' => 'ccl', 'CiPaw.01G190400' => 'cil', 'CiPaw.01G190500' => 'cil', 'CiPaw.02G116400' => 'cil', 'CiPaw.02G116500' => 'cil', 'CiPaw.04G183000' => 'cil', 'CiPaw.04G183300' => 'cil', 'ClCG05G004610' => 'cla', 'ClCG05G004620' => 'cla', 'ClCG06G006730' => 'cla', 'ClCG06G006740' => 'cla', 'ClCG11G003690' => 'cla', 'COL.COLO4_08276' => 'col', 'COL.COLO4_08277' => 'col', 'COL.COLO4_15787' => 'col', 'COL.COLO4_15789' => 'col', 'Cpa.g.c44815' => 'cpa', 'Cpa.g.sc52.144' => 'cpa', 'Cpa.g.sc58.46' => 'cpa', 'Cpa.g.sc58.47' => 'cpa', 'Cre08.g360900' => 'cre', 'CsaV3_2G013030' => 'csa', 'CsaV3_2G013050' => 'csa', 'CsaV3_2G015620' => 'csa', 'CsaV3_3G012590' => 'csa', 'CsaV3_3G012600' => 'csa', 'CSS0001641' => 'camsi', 'CSS0008310' => 'camsi', 'CSS0013011' => 'camsi', 'CSS0017147' => 'camsi', 'CSS0022970' => 'camsi', 'CSS0025655' => 'camsi', 'CSS0028665' => 'camsi', 'CSS0029117' => 'camsi', 'CSS0032024' => 'camsi', 'CSS0039681' => 'camsi', 'CSS0046516' => 'camsi', 'CSS0050307' => 'camsi', 'DCAR_005871' => 'dca', 'DCAR_007342' => 'dca', 'DCAR_024228' => 'dca', 'DCAR_027277' => 'dca', 'DCAR_030718' => 'dca', 'Dinv20287' => 'din', 'Dinv22461' => 'din', 'Dinv22464' => 'din', 'Dinv29912' => 'din', 'Dinv29913' => 'din', 'Dinv34580' => 'din', 'Dinv34582' => 'din', 'Dinv44632' => 'din', 'Duzib052G0266' => 'dzi', 'Duzib133G0907' => 'dzi', 'Duzib133G1034' => 'dzi', 'Duzib138G0207' => 'dzi', 'Duzib138G0491' => 'dzi', 'Duzib151G0812' => 'dzi', 'Duzib151G1166' => 'dzi', 'Duzib168G0192' => 'dzi', 'Duzib211G0077' => 'dzi', 'Duzib212G0429' => 'dzi', 'Duzib212G0472' => 'dzi', 'ECA233G2617' => 'eca', 'ECA236G4188' => 'eca', 'ECA240G0936' => 'eca', 'ECA240G1129' => 'eca', 'ECA247G0623' => 'eca', 'EL10Ac5g10451' => 'bvu', 'EL10Ac5g10453' => 'bvu', 'EL10Ac5g10894' => 'bvu', 'Eucgr.H00192' => 'egr', 'Eucgr.H00193' => 'egr', 'Eucgr.H00194' => 'egr', 'Eucgr.J01562' => 'egr', 'Eucgr.K03301' => 'egr', 'FAN02G0632' => 'fan', 'FAN05G5378' => 'fan', 'FAN09G3247' => 'fan', 'FAN12G0435' => 'fan', 'FAN12G2426' => 'fan', 'FAN14G1707' => 'fan', 'FAN14G4725' => 'fan', 'FAN15G2071' => 'fan', 'FAN17G3065' => 'fan', 'FAN19G1376' => 'fan', 'FAN20G0354' => 'fan', 'FAN20G2429' => 'fan', 'FAN20G2658' => 'fan', 'FAN24G2343' => 'fan', 'FAN27G2362' => 'fan', 'FAN28G1765' => 'fan', 'FvH4_1g16020' => 'fve', 'FvH4_2g04890' => 'fve', 'FvH4_2g22270' => 'fve', 'FvH4_4g02630' => 'fve', 'FvH4_4g02640' => 'fve', 'FvH4_6g02650' => 'fve', 'Glyma.02G140600' => 'gma', 'Glyma.03G159900' => 'gma', 'Glyma.05G234800' => 'gma', 'Glyma.07G269600' => 'gma', 'Glyma.08G042300' => 'gma', 'Glyma.10G033500' => 'gma', 'Glyma.10G185200' => 'gma', 'Glyma.17G004300' => 'gma', 'Glyma.19G161900' => 'gma', 'Glyma.20G205100' => 'gma', 'Glyma.20G205200' => 'gma', 'Gohir.A01G139101' => 'ghi', 'Gohir.A02G035600' => 'ghi', 'Gohir.A02G117901' => 'ghi', 'Gohir.A07G210100' => 'ghi', 'Gohir.A07G210200' => 'ghi', 'Gohir.A08G061100' => 'ghi', 'Gohir.A09G223000' => 'ghi', 'Gohir.A09G223100' => 'ghi', 'Gohir.A10G113900' => 'ghi', 'Gohir.A10G114000' => 'ghi', 'Gohir.D02G042300' => 'ghi', 'Gohir.D07G216100' => 'ghi', 'Gohir.D07G216200' => 'ghi', 'Gohir.D08G070400' => 'ghi', 'Gohir.D09G225000' => 'ghi', 'Gohir.D09G225100' => 'ghi', 'Gohir.D10G152300' => 'ghi', 'Gohir.D10G153200' => 'ghi', 'Gohir.D11G133701' => 'ghi', 'Gorai.004G074100' => 'gra', 'Gorai.005G046800' => 'gra', 'Gorai.006G246500' => 'gra', 'Gorai.006G246600' => 'gra', 'Gorai.007G142900' => 'gra', 'Gorai.011G171000' => 'gra', 'Gorai.011G171100' => 'gra', 'Gorai.013G104300' => 'gra', 'Gorai.013G104400' => 'gra', 'GSVIVG01000754001' => 'vvi', 'GSVIVG01000756001' => 'vvi', 'GSVIVG01010903001' => 'vvi', 'GSVIVG01017623001' => 'vvi', 'GSVIVG01018113001' => 'vvi', 'GSVIVG01018116001' => 'vvi', 'GSVIVG01018118001' => 'vvi', 'HanXRQChr03g0076211' => 'han', 'HanXRQChr03g0092431' => 'han', 'HanXRQChr03g0092441' => 'han', 'HanXRQChr03g0092591' => 'han', 'HanXRQChr03g0092671' => 'han', 'HanXRQChr03g0092681' => 'han', 'HanXRQChr03g0092691' => 'han', 'HanXRQChr03g0092701' => 'han', 'HanXRQChr03g0092721' => 'han', 'HanXRQChr03g0092731' => 'han', 'HanXRQChr04g0113681' => 'han', 'HanXRQChr10g0281371' => 'han', 'HanXRQChr11g0337141' => 'han', 'HanXRQChr13g0424521' => 'han', 'HanXRQChr13g0424531' => 'han', 'HanXRQChr13g0424541' => 'han', 'HanXRQChr16g0498221' => 'han', 'Haze_04377' => 'cav', 'Haze_11298' => 'cav', 'Haze_24547' => 'cav', 'Haze_24550' => 'cav', 'Haze_26587' => 'cav', 'Hma1.2p1_0650F.1_g195410' => 'hma', 'Hma1.2p1_0893F.1_g233470' => 'hma', 'HPP92_006508' => 'vpl', 'HPP92_024780' => 'vpl', 'Hund02688' => 'sun', 'Hund09380' => 'sun', 'Hund09381' => 'sun', 'Hund09832' => 'sun', 'Hund09833' => 'sun', 'Hund11351' => 'sun', 'Hund11513' => 'sun', 'Lalb_Chr06g0162591' => 'lal', 'Lalb_Chr06g0162601' => 'lal', 'Lalb_Chr06g0169321' => 'lal', 'Lalb_Chr09g0330951' => 'lal', 'Lalb_Chr16g0387631' => 'lal', 'Lalb_Chr21g0306241' => 'lal', 'Lalb_Chr25g0290051' => 'lal', 'Lalb_Chr25g0290061' => 'lal', 'Lalb_Chr25g0290071' => 'lal', 'Lj1g0003876' => 'lja', 'Lj1P1207T36' => 'lonja', 'Lj2C1156G12' => 'lonja', 'Lj3A793G39' => 'lonja', 'Lj3C580G2' => 'lonja', 'Lj3C780G2' => 'lonja', 'Lj3C780T4' => 'lonja', 'Lj3C793G9' => 'lonja', 'Lj4g0012960' => 'lja', 'Lj5g0021252' => 'lja', 'Lj5g0021484' => 'lja', 'Lj5g0024528' => 'lja', 'Lj6A399T12' => 'lonja', 'Lj6A656G65' => 'lonja', 'Lsat_1_v5_gn_3_125500' => 'lsa', 'Lsat_1_v5_gn_3_125540' => 'lsa', 'Lsat_1_v5_gn_5_72701' => 'lsa', 'Lsat_1_v5_gn_8_91560' => 'lsa', 'Lsat_1_v5_gn_9_9640' => 'lsa', 'Manes.01G200600' => 'mes', 'Manes.01G200700' => 'mes', 'Manes.03G168900' => 'mes', 'Manes.03G169000' => 'mes', 'Manes.05G085801' => 'mes', 'Manes.05G086200' => 'mes', 'Manes.15G036700' => 'mes', 'Manes.15G036900' => 'mes', 'Mapoly0004s0172' => 'mpo', 'Mapoly0023s0001' => 'mpo', 'Mapoly0142s0012' => 'mpo', 'MBI01_g32854_MAGBIO' => 'mbi', 'MBI11_g24427_MAGBIO' => 'mbi', 'MBI11_g47319_MAGBIO' => 'mbi', 'MCO01G433' => 'mco', 'MD00G1187800' => 'mdo', 'MD04G1226500' => 'mdo', 'MD05G1203900' => 'mdo', 'MD10G1191100' => 'mdo', 'MD12G1243500' => 'mdo', 'MD13G1207000' => 'mdo', 'MD13G1207100' => 'mdo', 'MD16G1208600' => 'mdo', 'Medtr1g050352' => 'mtr', 'Medtr1g070385' => 'mtr', 'Medtr1g070450' => 'mtr', 'Medtr1g075200' => 'mtr', 'Medtr1g075250' => 'mtr', 'Medtr1g075260' => 'mtr', 'Medtr1g475250' => 'mtr', 'Medtr4g075450' => 'mtr', 'Medtr7g096300' => 'mtr', 'Medtr8g105110' => 'mtr', 'MELO3C006470.2' => 'cme', 'MELO3C006471.2' => 'cme', 'MELO3C020772.2' => 'cme', 'MELO3C026780.2' => 'cme', 'MELO3C026781.2' => 'cme', 'Migut.D00390' => 'egut', 'Migut.G00435' => 'egut', 'Migut.G00436' => 'egut', 'Migut.G00718' => 'egut', 'MSTRG.21891' => 'ama', 'MSTRG.26910' => 'ama', 'MSTRG.4099' => 'ama', 'MSTRG.9925' => 'ama', 'Nitab4.5_0000165g0010' => 'nta', 'Nitab4.5_0000209g0180' => 'nta', 'Nitab4.5_0000244g0440' => 'nta', 'Nitab4.5_0000525g0220' => 'nta', 'Nitab4.5_0001597g0020' => 'nta', 'Nitab4.5_0001878g0040' => 'nta', 'Nitab4.5_0001878g0060' => 'nta', 'Nitab4.5_0002838g0100' => 'nta', 'Nitab4.5_0002838g0120' => 'nta', 'Nitab4.5_0004798g0030' => 'nta', 'Nitab4.5_0005420g0010' => 'nta', 'Nitab4.5_0005507g0010' => 'nta', 'Nitab4.5_0005574g0020' => 'nta', 'Nitab4.5_0005838g0010' => 'nta', 'Nitab4.5_0010580g0020' => 'nta', 'Nn1g02599' => 'nnu', 'Nn1g02608' => 'nnu', 'Nn3g17742' => 'nnu', 'Nn3g19534' => 'nnu', 'Nn3g19535' => 'nnu', 'Oeu008790.1' => 'oeu', 'Oeu008792.1' => 'oeu', 'Oeu032590.1' => 'oeu', 'Oeu035349.1' => 'oeu', 'Oeu049791.1' => 'oeu', 'Os01g0774500' => 'osa', 'Os03g0628800' => 'osa', 'Os03g0798600' => 'osa', 'Os05g0508800' => 'osa', 'Peaxi162Scf00036g02018' => 'pax', 'Peaxi162Scf00578g00032' => 'pax', 'Peaxi162Scf00578g00317' => 'pax', 'Peaxi162Scf00785g00114' => 'pax', 'Peaxi162Scf00813g00119' => 'pax', 'Peaxi162Scf00906g00227' => 'pax', 'PGR004G0875' => 'pgr', 'PGR004G2424' => 'pgr', 'PGR031G1239' => 'pgr', 'PGR031G2474' => 'pgr', 'PGR044G0423' => 'pgr', 'PGSC0003DMG400001128' => 'stu', 'PGSC0003DMG400007336' => 'stu', 'PGSC0003DMG400016318' => 'stu', 'PGSC0003DMG400016319' => 'stu', 'PGSC0003DMG400018074' => 'stu', 'Phvul.001G157700' => 'pvu', 'Phvul.002G148550' => 'pvu', 'Phvul.002G320200' => 'pvu', 'Phvul.003G089200' => 'pvu', 'Phvul.007G126000' => 'pvu', 'Phvul.007G126100' => 'pvu', 'Phvul.007G178000' => 'pvu', 'Phvul.007G178200' => 'pvu', 'Potri.002G043000' => 'ptr', 'Potri.002G043200' => 'ptr', 'Potri.003G123750' => 'ptr', 'Potri.005G055401' => 'ptr', 'Potri.005G219700' => 'ptr', 'Potri.005G220000' => 'ptr', 'Potri.008G161901' => 'ptr', 'Potri.008G162000' => 'ptr', 'Potri.008G162400' => 'ptr', 'Potri.010G076900' => 'ptr', 'Pp3c12_9180' => 'ppa', 'Pp3c13_19770' => 'ppa', 'Pp3c14_22950' => 'ppa', 'Pp3c16_12160' => 'ppa', 'Pp3c27_7820' => 'ppa', 'Pp3c2_3490' => 'ppa', 'Pp3c3_23700' => 'ppa', 'Pp3c3_36520' => 'ppa', 'Pp3c4_15250' => 'ppa', 'PRCOL_00007002' => 'pco', 'Prupe.1G030600' => 'ppe', 'Prupe.1G030700' => 'ppe', 'Prupe.6G345200' => 'ppe', 'Prupe.8G230300' => 'ppe', 'Prupe.8G230500' => 'ppe', 'Psat3g059600' => 'psa', 'Psat5g200920' => 'psa', 'Psat6g056440' => 'psa', 'Psat6g057360' => 'psa', 'Psat6g134120' => 'psa', 'Psat6g134160' => 'psa', 'Psat7g008640' => 'psa', 'Psat7g185240' => 'psa', 'PSO017G1330' => 'pso', 'PSO063G6097' => 'pso', 'PSO170G0835' => 'pso', 'PSO170G2499' => 'pso', 'PSO210G5058' => 'pso', 'PSO210G6154' => 'pso', 'PSO585G0031' => 'pso', 'PSO832G0264' => 'pso', 'PSO832G4288' => 'pso', 'QL03p027355' => 'qlo', 'QL03p027430' => 'qlo', 'QL04p081380' => 'qlo', 'QL06p015642' => 'qlo', 'QL06p015650' => 'qlo', 'QL06p015686' => 'qlo', 'QL12p042927' => 'qlo', 'QL93p1863_0035' => 'qlo', 'RcHm_v2.0_Chr3g0450581' => 'rch', 'RcHm_v2.0_Chr4g0390371' => 'rch', 'RcHm_v2.0_Chr4g0390381' => 'rch', 'RcHm_v2.0_Chr4g0390491' => 'rch', 'RcHm_v2.0_Chr4g0390501' => 'rch', 'RcHm_v2.0_Chr6g0289231' => 'rch', 'Rhsim04G0190400' => 'rsi', 'Rhsim04G0190500' => 'rsi', 'Rhsim04G0190600' => 'rsi', 'Rhsim13G0031400' => 'rsi', 'Rhsim13G0165600' => 'rsi', 'RhsimUnG0114600' => 'rsi', 'RhsimUnG0114700' => 'rsi', 'Sabra02G0034800' => 'sbr', 'Sabra02G0035100' => 'sbr', 'Sabra05G0168600' => 'sbr', 'Sabra05G0168800' => 'sbr', 'Sabra08G0123700' => 'sbr', 'Sabra10G0031900' => 'sbr', 'Sabra13G0039000' => 'sbr', 'SalBow2G0782' => 'sbo', 'SalBow2G1403' => 'sbo', 'SalBow4G0074' => 'sbo', 'SalBow4G2635' => 'sbo', 'SalBow5G3010' => 'sbo', 'Sc05g0000870' => 'sci', 'Sc05g0000890' => 'sci', 'Sc13g0005000' => 'sci', 'Sc13g0005030' => 'sci', 'Sc19g0003790' => 'sci', 'Sc19g0003800' => 'sci', 'Sed0003467' => 'sed', 'Sed0009355' => 'sed', 'Sed0009894' => 'sed', 'Sed0011972' => 'sed', 'Sed0021483' => 'sed', 'Sed0021750' => 'sed', 'Sed0026279' => 'sed', 'SEGI_05312' => 'sgi', 'SEGI_10112' => 'sgi', 'SEGI_15835' => 'sgi', 'SEGI_30386' => 'sgi', 'SEGI_34122' => 'sgi', 'SEGI_35063' => 'sgi', 'SGA_v2.0_scaffold101G29794' => 'sas', 'SGA_v2.0_scaffold1G00573' => 'sas', 'SGA_v2.0_scaffold79G25637' => 'sas', 'SGA_v2.0_scaffold88G27283' => 'sas', 'SGA_v2.0_scaffold88G27285' => 'sas', 'SGA_v2.0_scaffold88G27331' => 'sas', 'SHI09937' => 'shi', 'SMO119G0302' => 'smo', 'SMO137G0231' => 'smo', 'SMO367G1151' => 'smo', 'Solyc02g082000.3' => 'sly', 'Solyc06g031670.3' => 'sly', 'Solyc06g053810.3' => 'sly', 'Solyc07g025457.1' => 'sly', 'Solyc08g059740.1' => 'sly', 'Solyc08g059750.3' => 'sly', 'Solyc09g083370.3' => 'sly', 'Solyc12g038950.3' => 'sly', 'Sopen02g026630' => 'spe', 'Sopen06g018930' => 'spe', 'Sopen06g018940' => 'spe', 'Sopen08g009460' => 'spe', 'Sopen09g032290' => 'spe', 'Sp1g03080' => 'spa', 'Sp1g03090' => 'spa', 'Sp1g05480' => 'spa', 'Sp2g07860' => 'spa', 'Sp2g08430' => 'spa', 'Sp2g08440' => 'spa', 'Sp2g26200' => 'spa', 'Sp4g13170' => 'spa', 'Sp6g33840' => 'spa', 'SpUn1204_0010' => 'spa', 'TAR365G0908' => 'tar', 'TAR381G1270' => 'tar', 'TAR381G1651' => 'tar', 'TAR625G1131' => 'tar', 'TAR633G0962' => 'tar', 'TAR633G1729' => 'tar', 'TAR633G1864' => 'tar', 'TAR636G0221' => 'tar', 'TAR636G0314' => 'tar', 'TAR636G3202' => 'tar', 'THA.LOC104800805' => 'tha', 'THA.LOC104801096' => 'tha', 'THA.LOC104801555' => 'tha', 'THA.LOC104808491' => 'tha', 'THA.LOC104808595' => 'tha', 'THA.LOC104815985' => 'tha', 'THA.LOC104822250' => 'tha', 'THA.LOC104826071' => 'tha', 'Thecc.01G265200' => 'tca', 'Thecc.01G265300' => 'tca', 'Thecc.01G265700' => 'tca', 'Thecc.03G109100' => 'tca', 'Thecc.04G245900' => 'tca', 'Thecc.04G246000' => 'tca', 'Thhalv10003334m.g' => 'esa', 'Thhalv10005508m.g' => 'esa', 'Thhalv10005643m.g' => 'esa', 'Thhalv10007316m.g' => 'esa', 'Thhalv10009006m.g' => 'esa', 'Thhalv10009309m.g' => 'esa', 'Thhalv10014917m.g' => 'esa', 'Thhalv10014919m.g' => 'esa', 'Thhalv10015393m.g' => 'esa', 'Thhalv10016515m.g' => 'esa', 'Thhalv10029242m.g' => 'esa', 'TPR.G16654' => 'tpr', 'TPR.G20589' => 'tpr', 'TPR.G23029' => 'tpr', 'TPR.G27731' => 'tpr', 'TPR.G28889' => 'tpr', 'TPR.G28899' => 'tpr', 'TPR.G30846' => 'tpr', 'TPR.G5452' => 'tpr', 'TPR.G5713' => 'tpr', 'TPR.G9046' => 'tpr', 'TPR.G9061' => 'tpr', 'TWI09G1075' => 'twi', 'TWI12G0806' => 'twi', 'TWI18G0108' => 'twi', 'TWI53G1361' => 'twi', 'TWI73G0185' => 'twi', 'TWI73G0427' => 'twi', 'unitig_37.g12001' => 'ugi', 'unitig_747.g21660' => 'ugi', 'unitig_748.g7232' => 'ugi', 'unitig_748.g7315' => 'ugi', 'unitig_85.g27262' => 'ugi', 'unitig_92.g28220' => 'ugi', 'vmacro02632' => 'vma', 'vmacro08410' => 'vma', 'vmacro08411' => 'vma', 'vmacro15407' => 'vma', 'VMungo0251G3619' => 'vmu', 'VMungo0720G1204' => 'vmu', 'VMungo0720G1918' => 'vmu', 'VMungo0720G2387' => 'vmu', 'VMungo0720G2961' => 'vmu', 'VMungo1215G2154' => 'vmu', 'VMungo1383G2411' => 'vmu', 'Zm00001eb051130' => 'zma', 'Zm00001eb116830' => 'zma', 'Zm00001eb116850' => 'zma', 'Zm00001eb151740' => 'zma', 'Zm00001eb292360' => 'zma', 'Zm00001eb301640' => 'zma' ) $gf_id = 'HOM05D000856' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000856' ) $data_identifier = 'HOM05D000856' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 13, 'ath' => (int) 10, 'atr' => (int) 1, 'acertr' => (int) 8, 'cqu' => (int) 6, 'bca' => (int) 21, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 11, 'car' => (int) 9, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 8, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 5, 'fan' => (int) 16, 'fve' => (int) 6, 'gma' => (int) 11, 'ghi' => (int) 19, 'gra' => (int) 9, 'vvi' => (int) 7, 'han' => (int) 17, 'cav' => (int) 5, 'hma' => (int) 2, 'vpl' => (int) 2, 'sun' => (int) 7, 'lal' => (int) 9, 'lja' => (int) 5, 'lonja' => (int) 9, 'lsa' => (int) 5, 'mes' => (int) 8, 'mpo' => (int) 3, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 10, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 15, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 9, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 9, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 6, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 5, 'spa' => (int) 10, 'tar' => (int) 10, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 11, 'tpr' => (int) 11, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 4, 'vmu' => (int) 7, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb301640' $species_info = array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ) $local_species = 'nnu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000856', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p00010' => 'bna', 'A03p04160' => 'bna', 'A03p17160' => 'bna', 'A04p23370' => 'bna', 'A05p14860' => 'bna', 'A08p37020' => 'bna', 'A09p08050' => 'bna', 'A09p66800' => 'bna', 'A09p67940' => 'bna', 'A10p02680' => 'bna', 'A10p05320' => 'bna', 'Aa31LG1G20560' => 'aar', 'Aa31LG1G20610' => 'aar', 'Aa31LG1G7810' => 'aar', 'Aa31LG5G3590' => 'aar', 'Aa31LG5G6140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3819' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4683' => 'aag', 'Actinidia04480' => 'ach', 'Actinidia05466' => 'ach', 'Actinidia08445' => 'ach', 'Actinidia21170' => 'ach', 'Actinidia24812' => 'ach', 'Actinidia24951' => 'ach', 'Actinidia40088' => 'ach', 'Ah.02g111660' => 'amhyb', 'Ah.11g048900' => 'amhyb', 'Ah.11g049910' => 'amhyb', 'AL1G13870' => 'aly', 'AL1G13880' => 'aly', 'AL1G16760' => 'aly', 'AL390U10020' => 'aly', 'AL4G25520' => 'aly', 'AL6G19890' => 'aly', 'AL6G19900' => 'aly', 'AL6G19910' => 'aly', 'AL8G40100' => 'aly', 'Aqoxy2G03562' => 'aox', 'Aqoxy5G00316' => 'aox', 'Aqoxy5G00926' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1628KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1H403S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2FU6SJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.882I6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8YRY2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YN1SN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AF70II' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZA8L1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F916KL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHRD8H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KTZ8QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S22EMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8M29T' => 'arhy', 'AT1G04270' => 'ath', 'AT1G04280' => 'ath', 'AT1G06750' => 'ath', 'AT1G33850' => 'ath', 'AT2G30630' => 'ath', 'AT5G09490' => 'ath', 'AT5G09500' => 'ath', 'AT5G09510' => 'ath', 'AT5G43640' => 'ath', 'AT5G63070' => 'ath', 'ATR0605G315' => 'atr', 'Atru.chr11.175' => 'acertr', 'Atru.chr11.653' => 'acertr', 'Atru.chr3.1616' => 'acertr', 'Atru.chr4.2230' => 'acertr', 'Atru.chr4.2232' => 'acertr', 'Atru.chr5.1598' => 'acertr', 'Atru.chr5.1600' => 'acertr', 'Atru.chr5.2188' => 'acertr', 'AUR62008326' => 'cqu', 'AUR62011922' => 'cqu', 'AUR62011924' => 'cqu', 'AUR62021771' => 'cqu', 'AUR62032237' => 'cqu', 'AUR62032240' => 'cqu', 'BcaB01g05572' => 'bca', 'BcaB02g10337' => 'bca', 'BcaB04g19944' => 'bca', 'BcaB05g21548' => 'bca', 'BcaB05g21549' => 'bca', 'BcaB05g23227' => 'bca', 'BcaB06g26256' => 'bca', 'BcaB06g26257' => 'bca', 'BcaB06g28379' => 'bca', 'BcaC02g11159' => 'bca', 'BcaC03g13258' => 'bca', 'BcaC03g13259' => 'bca', 'BcaC05g24456' => 'bca', 'BcaC05g24457' => 'bca', 'BcaC07g36922' => 'bca', 'BcaC07g36923' => 'bca', 'BcaC07g42050' => 'bca', 'BcaC07g42176' => 'bca', 'BcaC07g42195' => 'bca', 'BcaC07g42196' => 'bca', 'BcaNung06674' => 'bca', 'BolC2t06351H' => 'bol', 'BolC2t06352H' => 'bol', 'BolC3t12993H' => 'bol', 'BolC4t23525H' => 'bol', 'BolC4t27475H' => 'bol', 'BolC5t29025H' => 'bol', 'BolC5t29026H' => 'bol', 'BolC8t46898H' => 'bol', 'BolC8t46899H' => 'bol', 'BolC8t52630H' => 'bol', 'BolC8t52765H' => 'bol', 'BolC9t53824H' => 'bol', 'BraA03t09760Z' => 'bra', 'BraA03t10990Z' => 'bra', 'BraA05t20413Z' => 'bra', 'BraA08t35602Z' => 'bra', 'BraA09t36458Z' => 'bra', 'BraA09t42018Z' => 'bra', 'BraA09t42129Z' => 'bra', 'BraA10t42536Z' => 'bra', 'BraA10t42537Z' => 'bra', 'C01p10690' => 'bna', 'C02p03890' => 'bna', 'C02p03900' => 'bna', 'C03p04620' => 'bna', 'C04p19870' => 'bna', 'C04p59670' => 'bna', 'C05p02460' => 'bna', 'C05p02470' => 'bna', 'C08p00980' => 'bna', 'C08p00990' => 'bna', 'C08p51030' => 'bna', 'C08p52360' => 'bna', 'C09p09120' => 'bna', 'CAN.G19.15' => 'can', 'CAN.G251.10' => 'can', 'CAN.G251.9' => 'can', 'CAN.G398.24' => 'can', 'CAN.G410.32' => 'can', 'CAN.G881.2' => 'can', 'CANSAT01G3025' => 'cansat', 'CANSAT78G1211' => 'cansat', 'CANSAT78G1218' => 'cansat', 'CANSAT78G1521' => 'cansat', 'CANSAT78G1670' => 'cansat', 'CARHR003600' => 'chi', 'CARHR003610' => 'chi', 'CARHR006290' => 'chi', 'CARHR006430' => 'chi', 'CARHR124110' => 'chi', 'CARHR203870' => 'chi', 'CARHR203880' => 'chi', 'CARHR203890' => 'chi', 'CARHR276880' => 'chi', 'Carub.0001s0346' => 'cru', 'Carub.0001s0347' => 'cru', 'Carub.0001s0607' => 'cru', 'Carub.0003s2768' => 'cru', 'Carub.0003s2769' => 'cru', 'Carub.0004s1178' => 'cru', 'Carub.0006s0806' => 'cru', 'Carub.0006s0807' => 'cru', 'Carub.0006s0808' => 'cru', 'Carub.0008s0501' => 'cru', 'Carub.0008s2379' => 'cru', 'Ca_08655_v3' => 'car', 'Ca_08922_v3' => 'car', 'Ca_08923_v3' => 'car', 'Ca_09119_v3' => 'car', 'Ca_09703_v3' => 'car', 'Ca_09705_v3' => 'car', 'Ca_09835_v3' => 'car', 'Ca_26403_v3' => 'car', 'Ca_30719_v3' => 'car', 'CBR_g17958' => 'cbr', 'CBR_g40516' => 'cbr', 'Cc00_g05350' => 'ccan', 'Cc01_g18690' => 'ccan', 'Cc03_g04830' => 'ccan', 'Cc03_g04850' => 'ccan', 'CDE02G4469' => 'cde', 'CDE06G0883' => 'cde', 'CDE06G1295' => 'cde', 'CDE06G1390' => 'cde', 'CDE07G0584' => 'cde', 'CDE07G1084' => 'cde', 'CDE08G1259' => 'cde', 'Cfa002341' => 'cfa', 'Cfa024337' => 'cfa', 'Ciclev10004749m.g' => 'ccl', 'Ciclev10006127m.g' => 'ccl', 'Ciclev10019720m.g' => 'ccl', 'Ciclev10022652m.g' => 'ccl', 'CiPaw.01G190400' => 'cil', 'CiPaw.01G190500' => 'cil', 'CiPaw.02G116400' => 'cil', 'CiPaw.02G116500' => 'cil', 'CiPaw.04G183000' => 'cil', 'CiPaw.04G183300' => 'cil', 'ClCG05G004610' => 'cla', 'ClCG05G004620' => 'cla', 'ClCG06G006730' => 'cla', 'ClCG06G006740' => 'cla', 'ClCG11G003690' => 'cla', 'COL.COLO4_08276' => 'col', 'COL.COLO4_08277' => 'col', 'COL.COLO4_15787' => 'col', 'COL.COLO4_15789' => 'col', 'Cpa.g.c44815' => 'cpa', 'Cpa.g.sc52.144' => 'cpa', 'Cpa.g.sc58.46' => 'cpa', 'Cpa.g.sc58.47' => 'cpa', 'Cre08.g360900' => 'cre', 'CsaV3_2G013030' => 'csa', 'CsaV3_2G013050' => 'csa', 'CsaV3_2G015620' => 'csa', 'CsaV3_3G012590' => 'csa', 'CsaV3_3G012600' => 'csa', 'CSS0001641' => 'camsi', 'CSS0008310' => 'camsi', 'CSS0013011' => 'camsi', 'CSS0017147' => 'camsi', 'CSS0022970' => 'camsi', 'CSS0025655' => 'camsi', 'CSS0028665' => 'camsi', 'CSS0029117' => 'camsi', 'CSS0032024' => 'camsi', 'CSS0039681' => 'camsi', 'CSS0046516' => 'camsi', 'CSS0050307' => 'camsi', 'DCAR_005871' => 'dca', 'DCAR_007342' => 'dca', 'DCAR_024228' => 'dca', 'DCAR_027277' => 'dca', 'DCAR_030718' => 'dca', 'Dinv20287' => 'din', 'Dinv22461' => 'din', 'Dinv22464' => 'din', 'Dinv29912' => 'din', 'Dinv29913' => 'din', 'Dinv34580' => 'din', 'Dinv34582' => 'din', 'Dinv44632' => 'din', 'Duzib052G0266' => 'dzi', 'Duzib133G0907' => 'dzi', 'Duzib133G1034' => 'dzi', 'Duzib138G0207' => 'dzi', 'Duzib138G0491' => 'dzi', 'Duzib151G0812' => 'dzi', 'Duzib151G1166' => 'dzi', 'Duzib168G0192' => 'dzi', 'Duzib211G0077' => 'dzi', 'Duzib212G0429' => 'dzi', 'Duzib212G0472' => 'dzi', 'ECA233G2617' => 'eca', 'ECA236G4188' => 'eca', 'ECA240G0936' => 'eca', 'ECA240G1129' => 'eca', 'ECA247G0623' => 'eca', 'EL10Ac5g10451' => 'bvu', 'EL10Ac5g10453' => 'bvu', 'EL10Ac5g10894' => 'bvu', 'Eucgr.H00192' => 'egr', 'Eucgr.H00193' => 'egr', 'Eucgr.H00194' => 'egr', 'Eucgr.J01562' => 'egr', 'Eucgr.K03301' => 'egr', 'FAN02G0632' => 'fan', 'FAN05G5378' => 'fan', 'FAN09G3247' => 'fan', 'FAN12G0435' => 'fan', 'FAN12G2426' => 'fan', 'FAN14G1707' => 'fan', 'FAN14G4725' => 'fan', 'FAN15G2071' => 'fan', 'FAN17G3065' => 'fan', 'FAN19G1376' => 'fan', 'FAN20G0354' => 'fan', 'FAN20G2429' => 'fan', 'FAN20G2658' => 'fan', 'FAN24G2343' => 'fan', 'FAN27G2362' => 'fan', 'FAN28G1765' => 'fan', 'FvH4_1g16020' => 'fve', 'FvH4_2g04890' => 'fve', 'FvH4_2g22270' => 'fve', 'FvH4_4g02630' => 'fve', 'FvH4_4g02640' => 'fve', 'FvH4_6g02650' => 'fve', 'Glyma.02G140600' => 'gma', 'Glyma.03G159900' => 'gma', 'Glyma.05G234800' => 'gma', 'Glyma.07G269600' => 'gma', 'Glyma.08G042300' => 'gma', 'Glyma.10G033500' => 'gma', 'Glyma.10G185200' => 'gma', 'Glyma.17G004300' => 'gma', 'Glyma.19G161900' => 'gma', 'Glyma.20G205100' => 'gma', 'Glyma.20G205200' => 'gma', 'Gohir.A01G139101' => 'ghi', 'Gohir.A02G035600' => 'ghi', 'Gohir.A02G117901' => 'ghi', 'Gohir.A07G210100' => 'ghi', 'Gohir.A07G210200' => 'ghi', 'Gohir.A08G061100' => 'ghi', 'Gohir.A09G223000' => 'ghi', 'Gohir.A09G223100' => 'ghi', 'Gohir.A10G113900' => 'ghi', 'Gohir.A10G114000' => 'ghi', 'Gohir.D02G042300' => 'ghi', 'Gohir.D07G216100' => 'ghi', 'Gohir.D07G216200' => 'ghi', 'Gohir.D08G070400' => 'ghi', 'Gohir.D09G225000' => 'ghi', 'Gohir.D09G225100' => 'ghi', 'Gohir.D10G152300' => 'ghi', 'Gohir.D10G153200' => 'ghi', 'Gohir.D11G133701' => 'ghi', 'Gorai.004G074100' => 'gra', 'Gorai.005G046800' => 'gra', 'Gorai.006G246500' => 'gra', 'Gorai.006G246600' => 'gra', 'Gorai.007G142900' => 'gra', 'Gorai.011G171000' => 'gra', 'Gorai.011G171100' => 'gra', 'Gorai.013G104300' => 'gra', 'Gorai.013G104400' => 'gra', 'GSVIVG01000754001' => 'vvi', 'GSVIVG01000756001' => 'vvi', 'GSVIVG01010903001' => 'vvi', 'GSVIVG01017623001' => 'vvi', 'GSVIVG01018113001' => 'vvi', 'GSVIVG01018116001' => 'vvi', 'GSVIVG01018118001' => 'vvi', 'HanXRQChr03g0076211' => 'han', 'HanXRQChr03g0092431' => 'han', 'HanXRQChr03g0092441' => 'han', 'HanXRQChr03g0092591' => 'han', 'HanXRQChr03g0092671' => 'han', 'HanXRQChr03g0092681' => 'han', 'HanXRQChr03g0092691' => 'han', 'HanXRQChr03g0092701' => 'han', 'HanXRQChr03g0092721' => 'han', 'HanXRQChr03g0092731' => 'han', 'HanXRQChr04g0113681' => 'han', 'HanXRQChr10g0281371' => 'han', 'HanXRQChr11g0337141' => 'han', 'HanXRQChr13g0424521' => 'han', 'HanXRQChr13g0424531' => 'han', 'HanXRQChr13g0424541' => 'han', 'HanXRQChr16g0498221' => 'han', 'Haze_04377' => 'cav', 'Haze_11298' => 'cav', 'Haze_24547' => 'cav', 'Haze_24550' => 'cav', 'Haze_26587' => 'cav', 'Hma1.2p1_0650F.1_g195410' => 'hma', 'Hma1.2p1_0893F.1_g233470' => 'hma', 'HPP92_006508' => 'vpl', 'HPP92_024780' => 'vpl', 'Hund02688' => 'sun', 'Hund09380' => 'sun', 'Hund09381' => 'sun', 'Hund09832' => 'sun', 'Hund09833' => 'sun', 'Hund11351' => 'sun', 'Hund11513' => 'sun', 'Lalb_Chr06g0162591' => 'lal', 'Lalb_Chr06g0162601' => 'lal', 'Lalb_Chr06g0169321' => 'lal', 'Lalb_Chr09g0330951' => 'lal', 'Lalb_Chr16g0387631' => 'lal', 'Lalb_Chr21g0306241' => 'lal', 'Lalb_Chr25g0290051' => 'lal', 'Lalb_Chr25g0290061' => 'lal', 'Lalb_Chr25g0290071' => 'lal', 'Lj1g0003876' => 'lja', 'Lj1P1207T36' => 'lonja', 'Lj2C1156G12' => 'lonja', 'Lj3A793G39' => 'lonja', 'Lj3C580G2' => 'lonja', 'Lj3C780G2' => 'lonja', 'Lj3C780T4' => 'lonja', 'Lj3C793G9' => 'lonja', 'Lj4g0012960' => 'lja', 'Lj5g0021252' => 'lja', 'Lj5g0021484' => 'lja', 'Lj5g0024528' => 'lja', 'Lj6A399T12' => 'lonja', 'Lj6A656G65' => 'lonja', 'Lsat_1_v5_gn_3_125500' => 'lsa', 'Lsat_1_v5_gn_3_125540' => 'lsa', 'Lsat_1_v5_gn_5_72701' => 'lsa', 'Lsat_1_v5_gn_8_91560' => 'lsa', 'Lsat_1_v5_gn_9_9640' => 'lsa', 'Manes.01G200600' => 'mes', 'Manes.01G200700' => 'mes', 'Manes.03G168900' => 'mes', 'Manes.03G169000' => 'mes', 'Manes.05G085801' => 'mes', 'Manes.05G086200' => 'mes', 'Manes.15G036700' => 'mes', 'Manes.15G036900' => 'mes', 'Mapoly0004s0172' => 'mpo', 'Mapoly0023s0001' => 'mpo', 'Mapoly0142s0012' => 'mpo', 'MBI01_g32854_MAGBIO' => 'mbi', 'MBI11_g24427_MAGBIO' => 'mbi', 'MBI11_g47319_MAGBIO' => 'mbi', 'MCO01G433' => 'mco', 'MD00G1187800' => 'mdo', 'MD04G1226500' => 'mdo', 'MD05G1203900' => 'mdo', 'MD10G1191100' => 'mdo', 'MD12G1243500' => 'mdo', 'MD13G1207000' => 'mdo', 'MD13G1207100' => 'mdo', 'MD16G1208600' => 'mdo', 'Medtr1g050352' => 'mtr', 'Medtr1g070385' => 'mtr', 'Medtr1g070450' => 'mtr', 'Medtr1g075200' => 'mtr', 'Medtr1g075250' => 'mtr', 'Medtr1g075260' => 'mtr', 'Medtr1g475250' => 'mtr', 'Medtr4g075450' => 'mtr', 'Medtr7g096300' => 'mtr', 'Medtr8g105110' => 'mtr', 'MELO3C006470.2' => 'cme', 'MELO3C006471.2' => 'cme', 'MELO3C020772.2' => 'cme', 'MELO3C026780.2' => 'cme', 'MELO3C026781.2' => 'cme', 'Migut.D00390' => 'egut', 'Migut.G00435' => 'egut', 'Migut.G00436' => 'egut', 'Migut.G00718' => 'egut', 'MSTRG.21891' => 'ama', 'MSTRG.26910' => 'ama', 'MSTRG.4099' => 'ama', 'MSTRG.9925' => 'ama', 'Nitab4.5_0000165g0010' => 'nta', 'Nitab4.5_0000209g0180' => 'nta', 'Nitab4.5_0000244g0440' => 'nta', 'Nitab4.5_0000525g0220' => 'nta', 'Nitab4.5_0001597g0020' => 'nta', 'Nitab4.5_0001878g0040' => 'nta', 'Nitab4.5_0001878g0060' => 'nta', 'Nitab4.5_0002838g0100' => 'nta', 'Nitab4.5_0002838g0120' => 'nta', 'Nitab4.5_0004798g0030' => 'nta', 'Nitab4.5_0005420g0010' => 'nta', 'Nitab4.5_0005507g0010' => 'nta', 'Nitab4.5_0005574g0020' => 'nta', 'Nitab4.5_0005838g0010' => 'nta', 'Nitab4.5_0010580g0020' => 'nta', 'Nn1g02599' => 'nnu', 'Nn1g02608' => 'nnu', 'Nn3g17742' => 'nnu', 'Nn3g19534' => 'nnu', 'Nn3g19535' => 'nnu', 'Oeu008790.1' => 'oeu', 'Oeu008792.1' => 'oeu', 'Oeu032590.1' => 'oeu', 'Oeu035349.1' => 'oeu', 'Oeu049791.1' => 'oeu', 'Os01g0774500' => 'osa', 'Os03g0628800' => 'osa', 'Os03g0798600' => 'osa', 'Os05g0508800' => 'osa', 'Peaxi162Scf00036g02018' => 'pax', 'Peaxi162Scf00578g00032' => 'pax', 'Peaxi162Scf00578g00317' => 'pax', 'Peaxi162Scf00785g00114' => 'pax', 'Peaxi162Scf00813g00119' => 'pax', 'Peaxi162Scf00906g00227' => 'pax', 'PGR004G0875' => 'pgr', 'PGR004G2424' => 'pgr', 'PGR031G1239' => 'pgr', 'PGR031G2474' => 'pgr', 'PGR044G0423' => 'pgr', 'PGSC0003DMG400001128' => 'stu', 'PGSC0003DMG400007336' => 'stu', 'PGSC0003DMG400016318' => 'stu', 'PGSC0003DMG400016319' => 'stu', 'PGSC0003DMG400018074' => 'stu', 'Phvul.001G157700' => 'pvu', 'Phvul.002G148550' => 'pvu', 'Phvul.002G320200' => 'pvu', 'Phvul.003G089200' => 'pvu', 'Phvul.007G126000' => 'pvu', 'Phvul.007G126100' => 'pvu', 'Phvul.007G178000' => 'pvu', 'Phvul.007G178200' => 'pvu', 'Potri.002G043000' => 'ptr', 'Potri.002G043200' => 'ptr', 'Potri.003G123750' => 'ptr', 'Potri.005G055401' => 'ptr', 'Potri.005G219700' => 'ptr', 'Potri.005G220000' => 'ptr', 'Potri.008G161901' => 'ptr', 'Potri.008G162000' => 'ptr', 'Potri.008G162400' => 'ptr', 'Potri.010G076900' => 'ptr', 'Pp3c12_9180' => 'ppa', 'Pp3c13_19770' => 'ppa', 'Pp3c14_22950' => 'ppa', 'Pp3c16_12160' => 'ppa', 'Pp3c27_7820' => 'ppa', 'Pp3c2_3490' => 'ppa', 'Pp3c3_23700' => 'ppa', 'Pp3c3_36520' => 'ppa', 'Pp3c4_15250' => 'ppa', 'PRCOL_00007002' => 'pco', 'Prupe.1G030600' => 'ppe', 'Prupe.1G030700' => 'ppe', 'Prupe.6G345200' => 'ppe', 'Prupe.8G230300' => 'ppe', 'Prupe.8G230500' => 'ppe', 'Psat3g059600' => 'psa', 'Psat5g200920' => 'psa', 'Psat6g056440' => 'psa', 'Psat6g057360' => 'psa', 'Psat6g134120' => 'psa', 'Psat6g134160' => 'psa', 'Psat7g008640' => 'psa', 'Psat7g185240' => 'psa', 'PSO017G1330' => 'pso', 'PSO063G6097' => 'pso', 'PSO170G0835' => 'pso', 'PSO170G2499' => 'pso', 'PSO210G5058' => 'pso', 'PSO210G6154' => 'pso', 'PSO585G0031' => 'pso', 'PSO832G0264' => 'pso', 'PSO832G4288' => 'pso', 'QL03p027355' => 'qlo', 'QL03p027430' => 'qlo', 'QL04p081380' => 'qlo', 'QL06p015642' => 'qlo', 'QL06p015650' => 'qlo', 'QL06p015686' => 'qlo', 'QL12p042927' => 'qlo', 'QL93p1863_0035' => 'qlo', 'RcHm_v2.0_Chr3g0450581' => 'rch', 'RcHm_v2.0_Chr4g0390371' => 'rch', 'RcHm_v2.0_Chr4g0390381' => 'rch', 'RcHm_v2.0_Chr4g0390491' => 'rch', 'RcHm_v2.0_Chr4g0390501' => 'rch', 'RcHm_v2.0_Chr6g0289231' => 'rch', 'Rhsim04G0190400' => 'rsi', 'Rhsim04G0190500' => 'rsi', 'Rhsim04G0190600' => 'rsi', 'Rhsim13G0031400' => 'rsi', 'Rhsim13G0165600' => 'rsi', 'RhsimUnG0114600' => 'rsi', 'RhsimUnG0114700' => 'rsi', 'Sabra02G0034800' => 'sbr', 'Sabra02G0035100' => 'sbr', 'Sabra05G0168600' => 'sbr', 'Sabra05G0168800' => 'sbr', 'Sabra08G0123700' => 'sbr', 'Sabra10G0031900' => 'sbr', 'Sabra13G0039000' => 'sbr', 'SalBow2G0782' => 'sbo', 'SalBow2G1403' => 'sbo', 'SalBow4G0074' => 'sbo', 'SalBow4G2635' => 'sbo', 'SalBow5G3010' => 'sbo', 'Sc05g0000870' => 'sci', 'Sc05g0000890' => 'sci', 'Sc13g0005000' => 'sci', 'Sc13g0005030' => 'sci', 'Sc19g0003790' => 'sci', 'Sc19g0003800' => 'sci', 'Sed0003467' => 'sed', 'Sed0009355' => 'sed', 'Sed0009894' => 'sed', 'Sed0011972' => 'sed', 'Sed0021483' => 'sed', 'Sed0021750' => 'sed', 'Sed0026279' => 'sed', 'SEGI_05312' => 'sgi', 'SEGI_10112' => 'sgi', 'SEGI_15835' => 'sgi', 'SEGI_30386' => 'sgi', 'SEGI_34122' => 'sgi', 'SEGI_35063' => 'sgi', 'SGA_v2.0_scaffold101G29794' => 'sas', 'SGA_v2.0_scaffold1G00573' => 'sas', 'SGA_v2.0_scaffold79G25637' => 'sas', 'SGA_v2.0_scaffold88G27283' => 'sas', 'SGA_v2.0_scaffold88G27285' => 'sas', 'SGA_v2.0_scaffold88G27331' => 'sas', 'SHI09937' => 'shi', 'SMO119G0302' => 'smo', 'SMO137G0231' => 'smo', 'SMO367G1151' => 'smo', 'Solyc02g082000.3' => 'sly', 'Solyc06g031670.3' => 'sly', 'Solyc06g053810.3' => 'sly', 'Solyc07g025457.1' => 'sly', 'Solyc08g059740.1' => 'sly', 'Solyc08g059750.3' => 'sly', 'Solyc09g083370.3' => 'sly', 'Solyc12g038950.3' => 'sly', 'Sopen02g026630' => 'spe', 'Sopen06g018930' => 'spe', 'Sopen06g018940' => 'spe', 'Sopen08g009460' => 'spe', 'Sopen09g032290' => 'spe', 'Sp1g03080' => 'spa', 'Sp1g03090' => 'spa', 'Sp1g05480' => 'spa', 'Sp2g07860' => 'spa', 'Sp2g08430' => 'spa', 'Sp2g08440' => 'spa', 'Sp2g26200' => 'spa', 'Sp4g13170' => 'spa', 'Sp6g33840' => 'spa', 'SpUn1204_0010' => 'spa', 'TAR365G0908' => 'tar', 'TAR381G1270' => 'tar', 'TAR381G1651' => 'tar', 'TAR625G1131' => 'tar', 'TAR633G0962' => 'tar', 'TAR633G1729' => 'tar', 'TAR633G1864' => 'tar', 'TAR636G0221' => 'tar', 'TAR636G0314' => 'tar', 'TAR636G3202' => 'tar', 'THA.LOC104800805' => 'tha', 'THA.LOC104801096' => 'tha', 'THA.LOC104801555' => 'tha', 'THA.LOC104808491' => 'tha', 'THA.LOC104808595' => 'tha', 'THA.LOC104815985' => 'tha', 'THA.LOC104822250' => 'tha', 'THA.LOC104826071' => 'tha', 'Thecc.01G265200' => 'tca', 'Thecc.01G265300' => 'tca', 'Thecc.01G265700' => 'tca', 'Thecc.03G109100' => 'tca', 'Thecc.04G245900' => 'tca', 'Thecc.04G246000' => 'tca', 'Thhalv10003334m.g' => 'esa', 'Thhalv10005508m.g' => 'esa', 'Thhalv10005643m.g' => 'esa', 'Thhalv10007316m.g' => 'esa', 'Thhalv10009006m.g' => 'esa', 'Thhalv10009309m.g' => 'esa', 'Thhalv10014917m.g' => 'esa', 'Thhalv10014919m.g' => 'esa', 'Thhalv10015393m.g' => 'esa', 'Thhalv10016515m.g' => 'esa', 'Thhalv10029242m.g' => 'esa', 'TPR.G16654' => 'tpr', 'TPR.G20589' => 'tpr', 'TPR.G23029' => 'tpr', 'TPR.G27731' => 'tpr', 'TPR.G28889' => 'tpr', 'TPR.G28899' => 'tpr', 'TPR.G30846' => 'tpr', 'TPR.G5452' => 'tpr', 'TPR.G5713' => 'tpr', 'TPR.G9046' => 'tpr', 'TPR.G9061' => 'tpr', 'TWI09G1075' => 'twi', 'TWI12G0806' => 'twi', 'TWI18G0108' => 'twi', 'TWI53G1361' => 'twi', 'TWI73G0185' => 'twi', 'TWI73G0427' => 'twi', 'unitig_37.g12001' => 'ugi', 'unitig_747.g21660' => 'ugi', 'unitig_748.g7232' => 'ugi', 'unitig_748.g7315' => 'ugi', 'unitig_85.g27262' => 'ugi', 'unitig_92.g28220' => 'ugi', 'vmacro02632' => 'vma', 'vmacro08410' => 'vma', 'vmacro08411' => 'vma', 'vmacro15407' => 'vma', 'VMungo0251G3619' => 'vmu', 'VMungo0720G1204' => 'vmu', 'VMungo0720G1918' => 'vmu', 'VMungo0720G2387' => 'vmu', 'VMungo0720G2961' => 'vmu', 'VMungo1215G2154' => 'vmu', 'VMungo1383G2411' => 'vmu', 'Zm00001eb051130' => 'zma', 'Zm00001eb116830' => 'zma', 'Zm00001eb116850' => 'zma', 'Zm00001eb151740' => 'zma', 'Zm00001eb292360' => 'zma', 'Zm00001eb301640' => 'zma' ), 'gf_id' => 'HOM05D000856', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000856' ), 'data_identifier' => 'HOM05D000856', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000856', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p00010' => 'bna', 'A03p04160' => 'bna', 'A03p17160' => 'bna', 'A04p23370' => 'bna', 'A05p14860' => 'bna', 'A08p37020' => 'bna', 'A09p08050' => 'bna', 'A09p66800' => 'bna', 'A09p67940' => 'bna', 'A10p02680' => 'bna', 'A10p05320' => 'bna', 'Aa31LG1G20560' => 'aar', 'Aa31LG1G20610' => 'aar', 'Aa31LG1G7810' => 'aar', 'Aa31LG5G3590' => 'aar', 'Aa31LG5G6140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3819' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4683' => 'aag', 'Actinidia04480' => 'ach', 'Actinidia05466' => 'ach', 'Actinidia08445' => 'ach', 'Actinidia21170' => 'ach', 'Actinidia24812' => 'ach', 'Actinidia24951' => 'ach', 'Actinidia40088' => 'ach', 'Ah.02g111660' => 'amhyb', 'Ah.11g048900' => 'amhyb', 'Ah.11g049910' => 'amhyb', 'AL1G13870' => 'aly', 'AL1G13880' => 'aly', 'AL1G16760' => 'aly', 'AL390U10020' => 'aly', 'AL4G25520' => 'aly', 'AL6G19890' => 'aly', 'AL6G19900' => 'aly', 'AL6G19910' => 'aly', 'AL8G40100' => 'aly', 'Aqoxy2G03562' => 'aox', 'Aqoxy5G00316' => 'aox', 'Aqoxy5G00926' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1628KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1H403S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2FU6SJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.882I6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8YRY2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YN1SN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AF70II' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZA8L1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F916KL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHRD8H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KTZ8QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S22EMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8M29T' => 'arhy', 'AT1G04270' => 'ath', 'AT1G04280' => 'ath', 'AT1G06750' => 'ath', 'AT1G33850' => 'ath', 'AT2G30630' => 'ath', 'AT5G09490' => 'ath', 'AT5G09500' => 'ath', 'AT5G09510' => 'ath', 'AT5G43640' => 'ath', 'AT5G63070' => 'ath', 'ATR0605G315' => 'atr', 'Atru.chr11.175' => 'acertr', 'Atru.chr11.653' => 'acertr', 'Atru.chr3.1616' => 'acertr', 'Atru.chr4.2230' => 'acertr', 'Atru.chr4.2232' => 'acertr', 'Atru.chr5.1598' => 'acertr', 'Atru.chr5.1600' => 'acertr', 'Atru.chr5.2188' => 'acertr', 'AUR62008326' => 'cqu', 'AUR62011922' => 'cqu', 'AUR62011924' => 'cqu', 'AUR62021771' => 'cqu', 'AUR62032237' => 'cqu', 'AUR62032240' => 'cqu', 'BcaB01g05572' => 'bca', 'BcaB02g10337' => 'bca', 'BcaB04g19944' => 'bca', 'BcaB05g21548' => 'bca', 'BcaB05g21549' => 'bca', 'BcaB05g23227' => 'bca', 'BcaB06g26256' => 'bca', 'BcaB06g26257' => 'bca', 'BcaB06g28379' => 'bca', 'BcaC02g11159' => 'bca', 'BcaC03g13258' => 'bca', 'BcaC03g13259' => 'bca', 'BcaC05g24456' => 'bca', 'BcaC05g24457' => 'bca', 'BcaC07g36922' => 'bca', 'BcaC07g36923' => 'bca', 'BcaC07g42050' => 'bca', 'BcaC07g42176' => 'bca', 'BcaC07g42195' => 'bca', 'BcaC07g42196' => 'bca', 'BcaNung06674' => 'bca', 'BolC2t06351H' => 'bol', 'BolC2t06352H' => 'bol', 'BolC3t12993H' => 'bol', 'BolC4t23525H' => 'bol', 'BolC4t27475H' => 'bol', 'BolC5t29025H' => 'bol', 'BolC5t29026H' => 'bol', 'BolC8t46898H' => 'bol', 'BolC8t46899H' => 'bol', 'BolC8t52630H' => 'bol', 'BolC8t52765H' => 'bol', 'BolC9t53824H' => 'bol', 'BraA03t09760Z' => 'bra', 'BraA03t10990Z' => 'bra', 'BraA05t20413Z' => 'bra', 'BraA08t35602Z' => 'bra', 'BraA09t36458Z' => 'bra', 'BraA09t42018Z' => 'bra', 'BraA09t42129Z' => 'bra', 'BraA10t42536Z' => 'bra', 'BraA10t42537Z' => 'bra', 'C01p10690' => 'bna', 'C02p03890' => 'bna', 'C02p03900' => 'bna', 'C03p04620' => 'bna', 'C04p19870' => 'bna', 'C04p59670' => 'bna', 'C05p02460' => 'bna', 'C05p02470' => 'bna', 'C08p00980' => 'bna', 'C08p00990' => 'bna', 'C08p51030' => 'bna', 'C08p52360' => 'bna', 'C09p09120' => 'bna', 'CAN.G19.15' => 'can', 'CAN.G251.10' => 'can', 'CAN.G251.9' => 'can', 'CAN.G398.24' => 'can', 'CAN.G410.32' => 'can', 'CAN.G881.2' => 'can', 'CANSAT01G3025' => 'cansat', 'CANSAT78G1211' => 'cansat', 'CANSAT78G1218' => 'cansat', 'CANSAT78G1521' => 'cansat', 'CANSAT78G1670' => 'cansat', 'CARHR003600' => 'chi', 'CARHR003610' => 'chi', 'CARHR006290' => 'chi', 'CARHR006430' => 'chi', 'CARHR124110' => 'chi', 'CARHR203870' => 'chi', 'CARHR203880' => 'chi', 'CARHR203890' => 'chi', 'CARHR276880' => 'chi', 'Carub.0001s0346' => 'cru', 'Carub.0001s0347' => 'cru', 'Carub.0001s0607' => 'cru', 'Carub.0003s2768' => 'cru', 'Carub.0003s2769' => 'cru', 'Carub.0004s1178' => 'cru', 'Carub.0006s0806' => 'cru', 'Carub.0006s0807' => 'cru', 'Carub.0006s0808' => 'cru', 'Carub.0008s0501' => 'cru', 'Carub.0008s2379' => 'cru', 'Ca_08655_v3' => 'car', 'Ca_08922_v3' => 'car', 'Ca_08923_v3' => 'car', 'Ca_09119_v3' => 'car', 'Ca_09703_v3' => 'car', 'Ca_09705_v3' => 'car', 'Ca_09835_v3' => 'car', 'Ca_26403_v3' => 'car', 'Ca_30719_v3' => 'car', 'CBR_g17958' => 'cbr', 'CBR_g40516' => 'cbr', 'Cc00_g05350' => 'ccan', 'Cc01_g18690' => 'ccan', 'Cc03_g04830' => 'ccan', 'Cc03_g04850' => 'ccan', 'CDE02G4469' => 'cde', 'CDE06G0883' => 'cde', 'CDE06G1295' => 'cde', 'CDE06G1390' => 'cde', 'CDE07G0584' => 'cde', 'CDE07G1084' => 'cde', 'CDE08G1259' => 'cde', 'Cfa002341' => 'cfa', 'Cfa024337' => 'cfa', 'Ciclev10004749m.g' => 'ccl', 'Ciclev10006127m.g' => 'ccl', 'Ciclev10019720m.g' => 'ccl', 'Ciclev10022652m.g' => 'ccl', 'CiPaw.01G190400' => 'cil', 'CiPaw.01G190500' => 'cil', 'CiPaw.02G116400' => 'cil', 'CiPaw.02G116500' => 'cil', 'CiPaw.04G183000' => 'cil', 'CiPaw.04G183300' => 'cil', 'ClCG05G004610' => 'cla', 'ClCG05G004620' => 'cla', 'ClCG06G006730' => 'cla', 'ClCG06G006740' => 'cla', 'ClCG11G003690' => 'cla', 'COL.COLO4_08276' => 'col', 'COL.COLO4_08277' => 'col', 'COL.COLO4_15787' => 'col', 'COL.COLO4_15789' => 'col', 'Cpa.g.c44815' => 'cpa', 'Cpa.g.sc52.144' => 'cpa', 'Cpa.g.sc58.46' => 'cpa', 'Cpa.g.sc58.47' => 'cpa', 'Cre08.g360900' => 'cre', 'CsaV3_2G013030' => 'csa', 'CsaV3_2G013050' => 'csa', 'CsaV3_2G015620' => 'csa', 'CsaV3_3G012590' => 'csa', 'CsaV3_3G012600' => 'csa', 'CSS0001641' => 'camsi', 'CSS0008310' => 'camsi', 'CSS0013011' => 'camsi', 'CSS0017147' => 'camsi', 'CSS0022970' => 'camsi', 'CSS0025655' => 'camsi', 'CSS0028665' => 'camsi', 'CSS0029117' => 'camsi', 'CSS0032024' => 'camsi', 'CSS0039681' => 'camsi', 'CSS0046516' => 'camsi', 'CSS0050307' => 'camsi', 'DCAR_005871' => 'dca', 'DCAR_007342' => 'dca', 'DCAR_024228' => 'dca', 'DCAR_027277' => 'dca', 'DCAR_030718' => 'dca', 'Dinv20287' => 'din', 'Dinv22461' => 'din', 'Dinv22464' => 'din', 'Dinv29912' => 'din', 'Dinv29913' => 'din', 'Dinv34580' => 'din', 'Dinv34582' => 'din', 'Dinv44632' => 'din', 'Duzib052G0266' => 'dzi', 'Duzib133G0907' => 'dzi', 'Duzib133G1034' => 'dzi', 'Duzib138G0207' => 'dzi', 'Duzib138G0491' => 'dzi', 'Duzib151G0812' => 'dzi', 'Duzib151G1166' => 'dzi', 'Duzib168G0192' => 'dzi', 'Duzib211G0077' => 'dzi', 'Duzib212G0429' => 'dzi', 'Duzib212G0472' => 'dzi', 'ECA233G2617' => 'eca', 'ECA236G4188' => 'eca', 'ECA240G0936' => 'eca', 'ECA240G1129' => 'eca', 'ECA247G0623' => 'eca', 'EL10Ac5g10451' => 'bvu', 'EL10Ac5g10453' => 'bvu', 'EL10Ac5g10894' => 'bvu', 'Eucgr.H00192' => 'egr', 'Eucgr.H00193' => 'egr', 'Eucgr.H00194' => 'egr', 'Eucgr.J01562' => 'egr', 'Eucgr.K03301' => 'egr', 'FAN02G0632' => 'fan', 'FAN05G5378' => 'fan', 'FAN09G3247' => 'fan', 'FAN12G0435' => 'fan', 'FAN12G2426' => 'fan', 'FAN14G1707' => 'fan', 'FAN14G4725' => 'fan', 'FAN15G2071' => 'fan', 'FAN17G3065' => 'fan', 'FAN19G1376' => 'fan', 'FAN20G0354' => 'fan', 'FAN20G2429' => 'fan', 'FAN20G2658' => 'fan', 'FAN24G2343' => 'fan', 'FAN27G2362' => 'fan', 'FAN28G1765' => 'fan', 'FvH4_1g16020' => 'fve', 'FvH4_2g04890' => 'fve', 'FvH4_2g22270' => 'fve', 'FvH4_4g02630' => 'fve', 'FvH4_4g02640' => 'fve', 'FvH4_6g02650' => 'fve', 'Glyma.02G140600' => 'gma', 'Glyma.03G159900' => 'gma', 'Glyma.05G234800' => 'gma', 'Glyma.07G269600' => 'gma', 'Glyma.08G042300' => 'gma', 'Glyma.10G033500' => 'gma', 'Glyma.10G185200' => 'gma', 'Glyma.17G004300' => 'gma', 'Glyma.19G161900' => 'gma', 'Glyma.20G205100' => 'gma', 'Glyma.20G205200' => 'gma', 'Gohir.A01G139101' => 'ghi', 'Gohir.A02G035600' => 'ghi', 'Gohir.A02G117901' => 'ghi', 'Gohir.A07G210100' => 'ghi', 'Gohir.A07G210200' => 'ghi', 'Gohir.A08G061100' => 'ghi', 'Gohir.A09G223000' => 'ghi', 'Gohir.A09G223100' => 'ghi', 'Gohir.A10G113900' => 'ghi', 'Gohir.A10G114000' => 'ghi', 'Gohir.D02G042300' => 'ghi', 'Gohir.D07G216100' => 'ghi', 'Gohir.D07G216200' => 'ghi', 'Gohir.D08G070400' => 'ghi', 'Gohir.D09G225000' => 'ghi', 'Gohir.D09G225100' => 'ghi', 'Gohir.D10G152300' => 'ghi', 'Gohir.D10G153200' => 'ghi', 'Gohir.D11G133701' => 'ghi', 'Gorai.004G074100' => 'gra', 'Gorai.005G046800' => 'gra', 'Gorai.006G246500' => 'gra', 'Gorai.006G246600' => 'gra', 'Gorai.007G142900' => 'gra', 'Gorai.011G171000' => 'gra', 'Gorai.011G171100' => 'gra', 'Gorai.013G104300' => 'gra', 'Gorai.013G104400' => 'gra', 'GSVIVG01000754001' => 'vvi', 'GSVIVG01000756001' => 'vvi', 'GSVIVG01010903001' => 'vvi', 'GSVIVG01017623001' => 'vvi', 'GSVIVG01018113001' => 'vvi', 'GSVIVG01018116001' => 'vvi', 'GSVIVG01018118001' => 'vvi', 'HanXRQChr03g0076211' => 'han', 'HanXRQChr03g0092431' => 'han', 'HanXRQChr03g0092441' => 'han', 'HanXRQChr03g0092591' => 'han', 'HanXRQChr03g0092671' => 'han', 'HanXRQChr03g0092681' => 'han', 'HanXRQChr03g0092691' => 'han', 'HanXRQChr03g0092701' => 'han', 'HanXRQChr03g0092721' => 'han', 'HanXRQChr03g0092731' => 'han', 'HanXRQChr04g0113681' => 'han', 'HanXRQChr10g0281371' => 'han', 'HanXRQChr11g0337141' => 'han', 'HanXRQChr13g0424521' => 'han', 'HanXRQChr13g0424531' => 'han', 'HanXRQChr13g0424541' => 'han', 'HanXRQChr16g0498221' => 'han', 'Haze_04377' => 'cav', 'Haze_11298' => 'cav', 'Haze_24547' => 'cav', 'Haze_24550' => 'cav', 'Haze_26587' => 'cav', 'Hma1.2p1_0650F.1_g195410' => 'hma', 'Hma1.2p1_0893F.1_g233470' => 'hma', 'HPP92_006508' => 'vpl', 'HPP92_024780' => 'vpl', 'Hund02688' => 'sun', 'Hund09380' => 'sun', 'Hund09381' => 'sun', 'Hund09832' => 'sun', 'Hund09833' => 'sun', 'Hund11351' => 'sun', 'Hund11513' => 'sun', 'Lalb_Chr06g0162591' => 'lal', 'Lalb_Chr06g0162601' => 'lal', 'Lalb_Chr06g0169321' => 'lal', 'Lalb_Chr09g0330951' => 'lal', 'Lalb_Chr16g0387631' => 'lal', 'Lalb_Chr21g0306241' => 'lal', 'Lalb_Chr25g0290051' => 'lal', 'Lalb_Chr25g0290061' => 'lal', 'Lalb_Chr25g0290071' => 'lal', 'Lj1g0003876' => 'lja', 'Lj1P1207T36' => 'lonja', 'Lj2C1156G12' => 'lonja', 'Lj3A793G39' => 'lonja', 'Lj3C580G2' => 'lonja', 'Lj3C780G2' => 'lonja', 'Lj3C780T4' => 'lonja', 'Lj3C793G9' => 'lonja', 'Lj4g0012960' => 'lja', 'Lj5g0021252' => 'lja', 'Lj5g0021484' => 'lja', 'Lj5g0024528' => 'lja', 'Lj6A399T12' => 'lonja', 'Lj6A656G65' => 'lonja', 'Lsat_1_v5_gn_3_125500' => 'lsa', 'Lsat_1_v5_gn_3_125540' => 'lsa', 'Lsat_1_v5_gn_5_72701' => 'lsa', 'Lsat_1_v5_gn_8_91560' => 'lsa', 'Lsat_1_v5_gn_9_9640' => 'lsa', 'Manes.01G200600' => 'mes', 'Manes.01G200700' => 'mes', 'Manes.03G168900' => 'mes', 'Manes.03G169000' => 'mes', 'Manes.05G085801' => 'mes', 'Manes.05G086200' => 'mes', 'Manes.15G036700' => 'mes', 'Manes.15G036900' => 'mes', 'Mapoly0004s0172' => 'mpo', 'Mapoly0023s0001' => 'mpo', 'Mapoly0142s0012' => 'mpo', 'MBI01_g32854_MAGBIO' => 'mbi', 'MBI11_g24427_MAGBIO' => 'mbi', 'MBI11_g47319_MAGBIO' => 'mbi', 'MCO01G433' => 'mco', 'MD00G1187800' => 'mdo', 'MD04G1226500' => 'mdo', 'MD05G1203900' => 'mdo', 'MD10G1191100' => 'mdo', 'MD12G1243500' => 'mdo', 'MD13G1207000' => 'mdo', 'MD13G1207100' => 'mdo', 'MD16G1208600' => 'mdo', 'Medtr1g050352' => 'mtr', 'Medtr1g070385' => 'mtr', 'Medtr1g070450' => 'mtr', 'Medtr1g075200' => 'mtr', 'Medtr1g075250' => 'mtr', 'Medtr1g075260' => 'mtr', 'Medtr1g475250' => 'mtr', 'Medtr4g075450' => 'mtr', 'Medtr7g096300' => 'mtr', 'Medtr8g105110' => 'mtr', 'MELO3C006470.2' => 'cme', 'MELO3C006471.2' => 'cme', 'MELO3C020772.2' => 'cme', 'MELO3C026780.2' => 'cme', 'MELO3C026781.2' => 'cme', 'Migut.D00390' => 'egut', 'Migut.G00435' => 'egut', 'Migut.G00436' => 'egut', 'Migut.G00718' => 'egut', 'MSTRG.21891' => 'ama', 'MSTRG.26910' => 'ama', 'MSTRG.4099' => 'ama', 'MSTRG.9925' => 'ama', 'Nitab4.5_0000165g0010' => 'nta', 'Nitab4.5_0000209g0180' => 'nta', 'Nitab4.5_0000244g0440' => 'nta', 'Nitab4.5_0000525g0220' => 'nta', 'Nitab4.5_0001597g0020' => 'nta', 'Nitab4.5_0001878g0040' => 'nta', 'Nitab4.5_0001878g0060' => 'nta', 'Nitab4.5_0002838g0100' => 'nta', 'Nitab4.5_0002838g0120' => 'nta', 'Nitab4.5_0004798g0030' => 'nta', 'Nitab4.5_0005420g0010' => 'nta', 'Nitab4.5_0005507g0010' => 'nta', 'Nitab4.5_0005574g0020' => 'nta', 'Nitab4.5_0005838g0010' => 'nta', 'Nitab4.5_0010580g0020' => 'nta', 'Nn1g02599' => 'nnu', 'Nn1g02608' => 'nnu', 'Nn3g17742' => 'nnu', 'Nn3g19534' => 'nnu', 'Nn3g19535' => 'nnu', 'Oeu008790.1' => 'oeu', 'Oeu008792.1' => 'oeu', 'Oeu032590.1' => 'oeu', 'Oeu035349.1' => 'oeu', 'Oeu049791.1' => 'oeu', 'Os01g0774500' => 'osa', 'Os03g0628800' => 'osa', 'Os03g0798600' => 'osa', 'Os05g0508800' => 'osa', 'Peaxi162Scf00036g02018' => 'pax', 'Peaxi162Scf00578g00032' => 'pax', 'Peaxi162Scf00578g00317' => 'pax', 'Peaxi162Scf00785g00114' => 'pax', 'Peaxi162Scf00813g00119' => 'pax', 'Peaxi162Scf00906g00227' => 'pax', 'PGR004G0875' => 'pgr', 'PGR004G2424' => 'pgr', 'PGR031G1239' => 'pgr', 'PGR031G2474' => 'pgr', 'PGR044G0423' => 'pgr', 'PGSC0003DMG400001128' => 'stu', 'PGSC0003DMG400007336' => 'stu', 'PGSC0003DMG400016318' => 'stu', 'PGSC0003DMG400016319' => 'stu', 'PGSC0003DMG400018074' => 'stu', 'Phvul.001G157700' => 'pvu', 'Phvul.002G148550' => 'pvu', 'Phvul.002G320200' => 'pvu', 'Phvul.003G089200' => 'pvu', 'Phvul.007G126000' => 'pvu', 'Phvul.007G126100' => 'pvu', 'Phvul.007G178000' => 'pvu', 'Phvul.007G178200' => 'pvu', 'Potri.002G043000' => 'ptr', 'Potri.002G043200' => 'ptr', 'Potri.003G123750' => 'ptr', 'Potri.005G055401' => 'ptr', 'Potri.005G219700' => 'ptr', 'Potri.005G220000' => 'ptr', 'Potri.008G161901' => 'ptr', 'Potri.008G162000' => 'ptr', 'Potri.008G162400' => 'ptr', 'Potri.010G076900' => 'ptr', 'Pp3c12_9180' => 'ppa', 'Pp3c13_19770' => 'ppa', 'Pp3c14_22950' => 'ppa', 'Pp3c16_12160' => 'ppa', 'Pp3c27_7820' => 'ppa', 'Pp3c2_3490' => 'ppa', 'Pp3c3_23700' => 'ppa', 'Pp3c3_36520' => 'ppa', 'Pp3c4_15250' => 'ppa', 'PRCOL_00007002' => 'pco', 'Prupe.1G030600' => 'ppe', 'Prupe.1G030700' => 'ppe', 'Prupe.6G345200' => 'ppe', 'Prupe.8G230300' => 'ppe', 'Prupe.8G230500' => 'ppe', 'Psat3g059600' => 'psa', 'Psat5g200920' => 'psa', 'Psat6g056440' => 'psa', 'Psat6g057360' => 'psa', 'Psat6g134120' => 'psa', 'Psat6g134160' => 'psa', 'Psat7g008640' => 'psa', 'Psat7g185240' => 'psa', 'PSO017G1330' => 'pso', 'PSO063G6097' => 'pso', 'PSO170G0835' => 'pso', 'PSO170G2499' => 'pso', 'PSO210G5058' => 'pso', 'PSO210G6154' => 'pso', 'PSO585G0031' => 'pso', 'PSO832G0264' => 'pso', 'PSO832G4288' => 'pso', 'QL03p027355' => 'qlo', 'QL03p027430' => 'qlo', 'QL04p081380' => 'qlo', 'QL06p015642' => 'qlo', 'QL06p015650' => 'qlo', 'QL06p015686' => 'qlo', 'QL12p042927' => 'qlo', 'QL93p1863_0035' => 'qlo', 'RcHm_v2.0_Chr3g0450581' => 'rch', 'RcHm_v2.0_Chr4g0390371' => 'rch', 'RcHm_v2.0_Chr4g0390381' => 'rch', 'RcHm_v2.0_Chr4g0390491' => 'rch', 'RcHm_v2.0_Chr4g0390501' => 'rch', 'RcHm_v2.0_Chr6g0289231' => 'rch', 'Rhsim04G0190400' => 'rsi', 'Rhsim04G0190500' => 'rsi', 'Rhsim04G0190600' => 'rsi', 'Rhsim13G0031400' => 'rsi', 'Rhsim13G0165600' => 'rsi', 'RhsimUnG0114600' => 'rsi', 'RhsimUnG0114700' => 'rsi', 'Sabra02G0034800' => 'sbr', 'Sabra02G0035100' => 'sbr', 'Sabra05G0168600' => 'sbr', 'Sabra05G0168800' => 'sbr', 'Sabra08G0123700' => 'sbr', 'Sabra10G0031900' => 'sbr', 'Sabra13G0039000' => 'sbr', 'SalBow2G0782' => 'sbo', 'SalBow2G1403' => 'sbo', 'SalBow4G0074' => 'sbo', 'SalBow4G2635' => 'sbo', 'SalBow5G3010' => 'sbo', 'Sc05g0000870' => 'sci', 'Sc05g0000890' => 'sci', 'Sc13g0005000' => 'sci', 'Sc13g0005030' => 'sci', 'Sc19g0003790' => 'sci', 'Sc19g0003800' => 'sci', 'Sed0003467' => 'sed', 'Sed0009355' => 'sed', 'Sed0009894' => 'sed', 'Sed0011972' => 'sed', 'Sed0021483' => 'sed', 'Sed0021750' => 'sed', 'Sed0026279' => 'sed', 'SEGI_05312' => 'sgi', 'SEGI_10112' => 'sgi', 'SEGI_15835' => 'sgi', 'SEGI_30386' => 'sgi', 'SEGI_34122' => 'sgi', 'SEGI_35063' => 'sgi', 'SGA_v2.0_scaffold101G29794' => 'sas', 'SGA_v2.0_scaffold1G00573' => 'sas', 'SGA_v2.0_scaffold79G25637' => 'sas', 'SGA_v2.0_scaffold88G27283' => 'sas', 'SGA_v2.0_scaffold88G27285' => 'sas', 'SGA_v2.0_scaffold88G27331' => 'sas', 'SHI09937' => 'shi', 'SMO119G0302' => 'smo', 'SMO137G0231' => 'smo', 'SMO367G1151' => 'smo', 'Solyc02g082000.3' => 'sly', 'Solyc06g031670.3' => 'sly', 'Solyc06g053810.3' => 'sly', 'Solyc07g025457.1' => 'sly', 'Solyc08g059740.1' => 'sly', 'Solyc08g059750.3' => 'sly', 'Solyc09g083370.3' => 'sly', 'Solyc12g038950.3' => 'sly', 'Sopen02g026630' => 'spe', 'Sopen06g018930' => 'spe', 'Sopen06g018940' => 'spe', 'Sopen08g009460' => 'spe', 'Sopen09g032290' => 'spe', 'Sp1g03080' => 'spa', 'Sp1g03090' => 'spa', 'Sp1g05480' => 'spa', 'Sp2g07860' => 'spa', 'Sp2g08430' => 'spa', 'Sp2g08440' => 'spa', 'Sp2g26200' => 'spa', 'Sp4g13170' => 'spa', 'Sp6g33840' => 'spa', 'SpUn1204_0010' => 'spa', 'TAR365G0908' => 'tar', 'TAR381G1270' => 'tar', 'TAR381G1651' => 'tar', 'TAR625G1131' => 'tar', 'TAR633G0962' => 'tar', 'TAR633G1729' => 'tar', 'TAR633G1864' => 'tar', 'TAR636G0221' => 'tar', 'TAR636G0314' => 'tar', 'TAR636G3202' => 'tar', 'THA.LOC104800805' => 'tha', 'THA.LOC104801096' => 'tha', 'THA.LOC104801555' => 'tha', 'THA.LOC104808491' => 'tha', 'THA.LOC104808595' => 'tha', 'THA.LOC104815985' => 'tha', 'THA.LOC104822250' => 'tha', 'THA.LOC104826071' => 'tha', 'Thecc.01G265200' => 'tca', 'Thecc.01G265300' => 'tca', 'Thecc.01G265700' => 'tca', 'Thecc.03G109100' => 'tca', 'Thecc.04G245900' => 'tca', 'Thecc.04G246000' => 'tca', 'Thhalv10003334m.g' => 'esa', 'Thhalv10005508m.g' => 'esa', 'Thhalv10005643m.g' => 'esa', 'Thhalv10007316m.g' => 'esa', 'Thhalv10009006m.g' => 'esa', 'Thhalv10009309m.g' => 'esa', 'Thhalv10014917m.g' => 'esa', 'Thhalv10014919m.g' => 'esa', 'Thhalv10015393m.g' => 'esa', 'Thhalv10016515m.g' => 'esa', 'Thhalv10029242m.g' => 'esa', 'TPR.G16654' => 'tpr', 'TPR.G20589' => 'tpr', 'TPR.G23029' => 'tpr', 'TPR.G27731' => 'tpr', 'TPR.G28889' => 'tpr', 'TPR.G28899' => 'tpr', 'TPR.G30846' => 'tpr', 'TPR.G5452' => 'tpr', 'TPR.G5713' => 'tpr', 'TPR.G9046' => 'tpr', 'TPR.G9061' => 'tpr', 'TWI09G1075' => 'twi', 'TWI12G0806' => 'twi', 'TWI18G0108' => 'twi', 'TWI53G1361' => 'twi', 'TWI73G0185' => 'twi', 'TWI73G0427' => 'twi', 'unitig_37.g12001' => 'ugi', 'unitig_747.g21660' => 'ugi', 'unitig_748.g7232' => 'ugi', 'unitig_748.g7315' => 'ugi', 'unitig_85.g27262' => 'ugi', 'unitig_92.g28220' => 'ugi', 'vmacro02632' => 'vma', 'vmacro08410' => 'vma', 'vmacro08411' => 'vma', 'vmacro15407' => 'vma', 'VMungo0251G3619' => 'vmu', 'VMungo0720G1204' => 'vmu', 'VMungo0720G1918' => 'vmu', 'VMungo0720G2387' => 'vmu', 'VMungo0720G2961' => 'vmu', 'VMungo1215G2154' => 'vmu', 'VMungo1383G2411' => 'vmu', 'Zm00001eb051130' => 'zma', 'Zm00001eb116830' => 'zma', 'Zm00001eb116850' => 'zma', 'Zm00001eb151740' => 'zma', 'Zm00001eb292360' => 'zma', 'Zm00001eb301640' => 'zma' ) $gf_id = 'HOM05D000856' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000856' ) $data_identifier = 'HOM05D000856' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 13, 'ath' => (int) 10, 'atr' => (int) 1, 'acertr' => (int) 8, 'cqu' => (int) 6, 'bca' => (int) 21, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 11, 'car' => (int) 9, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 8, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 5, 'fan' => (int) 16, 'fve' => (int) 6, 'gma' => (int) 11, 'ghi' => (int) 19, 'gra' => (int) 9, 'vvi' => (int) 7, 'han' => (int) 17, 'cav' => (int) 5, 'hma' => (int) 2, 'vpl' => (int) 2, 'sun' => (int) 7, 'lal' => (int) 9, 'lja' => (int) 5, 'lonja' => (int) 9, 'lsa' => (int) 5, 'mes' => (int) 8, 'mpo' => (int) 3, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 10, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 15, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 9, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 9, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 6, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 5, 'spa' => (int) 10, 'tar' => (int) 10, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 11, 'tpr' => (int) 11, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 4, 'vmu' => (int) 7, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb301640' $species_info = array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ) $local_species = 'nnu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000856', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p00010' => 'bna', 'A03p04160' => 'bna', 'A03p17160' => 'bna', 'A04p23370' => 'bna', 'A05p14860' => 'bna', 'A08p37020' => 'bna', 'A09p08050' => 'bna', 'A09p66800' => 'bna', 'A09p67940' => 'bna', 'A10p02680' => 'bna', 'A10p05320' => 'bna', 'Aa31LG1G20560' => 'aar', 'Aa31LG1G20610' => 'aar', 'Aa31LG1G7810' => 'aar', 'Aa31LG5G3590' => 'aar', 'Aa31LG5G6140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3819' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4683' => 'aag', 'Actinidia04480' => 'ach', 'Actinidia05466' => 'ach', 'Actinidia08445' => 'ach', 'Actinidia21170' => 'ach', 'Actinidia24812' => 'ach', 'Actinidia24951' => 'ach', 'Actinidia40088' => 'ach', 'Ah.02g111660' => 'amhyb', 'Ah.11g048900' => 'amhyb', 'Ah.11g049910' => 'amhyb', 'AL1G13870' => 'aly', 'AL1G13880' => 'aly', 'AL1G16760' => 'aly', 'AL390U10020' => 'aly', 'AL4G25520' => 'aly', 'AL6G19890' => 'aly', 'AL6G19900' => 'aly', 'AL6G19910' => 'aly', 'AL8G40100' => 'aly', 'Aqoxy2G03562' => 'aox', 'Aqoxy5G00316' => 'aox', 'Aqoxy5G00926' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1628KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1H403S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2FU6SJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.882I6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8YRY2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YN1SN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AF70II' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZA8L1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F916KL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHRD8H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KTZ8QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S22EMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8M29T' => 'arhy', 'AT1G04270' => 'ath', 'AT1G04280' => 'ath', 'AT1G06750' => 'ath', 'AT1G33850' => 'ath', 'AT2G30630' => 'ath', 'AT5G09490' => 'ath', 'AT5G09500' => 'ath', 'AT5G09510' => 'ath', 'AT5G43640' => 'ath', 'AT5G63070' => 'ath', 'ATR0605G315' => 'atr', 'Atru.chr11.175' => 'acertr', 'Atru.chr11.653' => 'acertr', 'Atru.chr3.1616' => 'acertr', 'Atru.chr4.2230' => 'acertr', 'Atru.chr4.2232' => 'acertr', 'Atru.chr5.1598' => 'acertr', 'Atru.chr5.1600' => 'acertr', 'Atru.chr5.2188' => 'acertr', 'AUR62008326' => 'cqu', 'AUR62011922' => 'cqu', 'AUR62011924' => 'cqu', 'AUR62021771' => 'cqu', 'AUR62032237' => 'cqu', 'AUR62032240' => 'cqu', 'BcaB01g05572' => 'bca', 'BcaB02g10337' => 'bca', 'BcaB04g19944' => 'bca', 'BcaB05g21548' => 'bca', 'BcaB05g21549' => 'bca', 'BcaB05g23227' => 'bca', 'BcaB06g26256' => 'bca', 'BcaB06g26257' => 'bca', 'BcaB06g28379' => 'bca', 'BcaC02g11159' => 'bca', 'BcaC03g13258' => 'bca', 'BcaC03g13259' => 'bca', 'BcaC05g24456' => 'bca', 'BcaC05g24457' => 'bca', 'BcaC07g36922' => 'bca', 'BcaC07g36923' => 'bca', 'BcaC07g42050' => 'bca', 'BcaC07g42176' => 'bca', 'BcaC07g42195' => 'bca', 'BcaC07g42196' => 'bca', 'BcaNung06674' => 'bca', 'BolC2t06351H' => 'bol', 'BolC2t06352H' => 'bol', 'BolC3t12993H' => 'bol', 'BolC4t23525H' => 'bol', 'BolC4t27475H' => 'bol', 'BolC5t29025H' => 'bol', 'BolC5t29026H' => 'bol', 'BolC8t46898H' => 'bol', 'BolC8t46899H' => 'bol', 'BolC8t52630H' => 'bol', 'BolC8t52765H' => 'bol', 'BolC9t53824H' => 'bol', 'BraA03t09760Z' => 'bra', 'BraA03t10990Z' => 'bra', 'BraA05t20413Z' => 'bra', 'BraA08t35602Z' => 'bra', 'BraA09t36458Z' => 'bra', 'BraA09t42018Z' => 'bra', 'BraA09t42129Z' => 'bra', 'BraA10t42536Z' => 'bra', 'BraA10t42537Z' => 'bra', 'C01p10690' => 'bna', 'C02p03890' => 'bna', 'C02p03900' => 'bna', 'C03p04620' => 'bna', 'C04p19870' => 'bna', 'C04p59670' => 'bna', 'C05p02460' => 'bna', 'C05p02470' => 'bna', 'C08p00980' => 'bna', 'C08p00990' => 'bna', 'C08p51030' => 'bna', 'C08p52360' => 'bna', 'C09p09120' => 'bna', 'CAN.G19.15' => 'can', 'CAN.G251.10' => 'can', 'CAN.G251.9' => 'can', 'CAN.G398.24' => 'can', 'CAN.G410.32' => 'can', 'CAN.G881.2' => 'can', 'CANSAT01G3025' => 'cansat', 'CANSAT78G1211' => 'cansat', 'CANSAT78G1218' => 'cansat', 'CANSAT78G1521' => 'cansat', 'CANSAT78G1670' => 'cansat', 'CARHR003600' => 'chi', 'CARHR003610' => 'chi', 'CARHR006290' => 'chi', 'CARHR006430' => 'chi', 'CARHR124110' => 'chi', 'CARHR203870' => 'chi', 'CARHR203880' => 'chi', 'CARHR203890' => 'chi', 'CARHR276880' => 'chi', 'Carub.0001s0346' => 'cru', 'Carub.0001s0347' => 'cru', 'Carub.0001s0607' => 'cru', 'Carub.0003s2768' => 'cru', 'Carub.0003s2769' => 'cru', 'Carub.0004s1178' => 'cru', 'Carub.0006s0806' => 'cru', 'Carub.0006s0807' => 'cru', 'Carub.0006s0808' => 'cru', 'Carub.0008s0501' => 'cru', 'Carub.0008s2379' => 'cru', 'Ca_08655_v3' => 'car', 'Ca_08922_v3' => 'car', 'Ca_08923_v3' => 'car', 'Ca_09119_v3' => 'car', 'Ca_09703_v3' => 'car', 'Ca_09705_v3' => 'car', 'Ca_09835_v3' => 'car', 'Ca_26403_v3' => 'car', 'Ca_30719_v3' => 'car', 'CBR_g17958' => 'cbr', 'CBR_g40516' => 'cbr', 'Cc00_g05350' => 'ccan', 'Cc01_g18690' => 'ccan', 'Cc03_g04830' => 'ccan', 'Cc03_g04850' => 'ccan', 'CDE02G4469' => 'cde', 'CDE06G0883' => 'cde', 'CDE06G1295' => 'cde', 'CDE06G1390' => 'cde', 'CDE07G0584' => 'cde', 'CDE07G1084' => 'cde', 'CDE08G1259' => 'cde', 'Cfa002341' => 'cfa', 'Cfa024337' => 'cfa', 'Ciclev10004749m.g' => 'ccl', 'Ciclev10006127m.g' => 'ccl', 'Ciclev10019720m.g' => 'ccl', 'Ciclev10022652m.g' => 'ccl', 'CiPaw.01G190400' => 'cil', 'CiPaw.01G190500' => 'cil', 'CiPaw.02G116400' => 'cil', 'CiPaw.02G116500' => 'cil', 'CiPaw.04G183000' => 'cil', 'CiPaw.04G183300' => 'cil', 'ClCG05G004610' => 'cla', 'ClCG05G004620' => 'cla', 'ClCG06G006730' => 'cla', 'ClCG06G006740' => 'cla', 'ClCG11G003690' => 'cla', 'COL.COLO4_08276' => 'col', 'COL.COLO4_08277' => 'col', 'COL.COLO4_15787' => 'col', 'COL.COLO4_15789' => 'col', 'Cpa.g.c44815' => 'cpa', 'Cpa.g.sc52.144' => 'cpa', 'Cpa.g.sc58.46' => 'cpa', 'Cpa.g.sc58.47' => 'cpa', 'Cre08.g360900' => 'cre', 'CsaV3_2G013030' => 'csa', 'CsaV3_2G013050' => 'csa', 'CsaV3_2G015620' => 'csa', 'CsaV3_3G012590' => 'csa', 'CsaV3_3G012600' => 'csa', 'CSS0001641' => 'camsi', 'CSS0008310' => 'camsi', 'CSS0013011' => 'camsi', 'CSS0017147' => 'camsi', 'CSS0022970' => 'camsi', 'CSS0025655' => 'camsi', 'CSS0028665' => 'camsi', 'CSS0029117' => 'camsi', 'CSS0032024' => 'camsi', 'CSS0039681' => 'camsi', 'CSS0046516' => 'camsi', 'CSS0050307' => 'camsi', 'DCAR_005871' => 'dca', 'DCAR_007342' => 'dca', 'DCAR_024228' => 'dca', 'DCAR_027277' => 'dca', 'DCAR_030718' => 'dca', 'Dinv20287' => 'din', 'Dinv22461' => 'din', 'Dinv22464' => 'din', 'Dinv29912' => 'din', 'Dinv29913' => 'din', 'Dinv34580' => 'din', 'Dinv34582' => 'din', 'Dinv44632' => 'din', 'Duzib052G0266' => 'dzi', 'Duzib133G0907' => 'dzi', 'Duzib133G1034' => 'dzi', 'Duzib138G0207' => 'dzi', 'Duzib138G0491' => 'dzi', 'Duzib151G0812' => 'dzi', 'Duzib151G1166' => 'dzi', 'Duzib168G0192' => 'dzi', 'Duzib211G0077' => 'dzi', 'Duzib212G0429' => 'dzi', 'Duzib212G0472' => 'dzi', 'ECA233G2617' => 'eca', 'ECA236G4188' => 'eca', 'ECA240G0936' => 'eca', 'ECA240G1129' => 'eca', 'ECA247G0623' => 'eca', 'EL10Ac5g10451' => 'bvu', 'EL10Ac5g10453' => 'bvu', 'EL10Ac5g10894' => 'bvu', 'Eucgr.H00192' => 'egr', 'Eucgr.H00193' => 'egr', 'Eucgr.H00194' => 'egr', 'Eucgr.J01562' => 'egr', 'Eucgr.K03301' => 'egr', 'FAN02G0632' => 'fan', 'FAN05G5378' => 'fan', 'FAN09G3247' => 'fan', 'FAN12G0435' => 'fan', 'FAN12G2426' => 'fan', 'FAN14G1707' => 'fan', 'FAN14G4725' => 'fan', 'FAN15G2071' => 'fan', 'FAN17G3065' => 'fan', 'FAN19G1376' => 'fan', 'FAN20G0354' => 'fan', 'FAN20G2429' => 'fan', 'FAN20G2658' => 'fan', 'FAN24G2343' => 'fan', 'FAN27G2362' => 'fan', 'FAN28G1765' => 'fan', 'FvH4_1g16020' => 'fve', 'FvH4_2g04890' => 'fve', 'FvH4_2g22270' => 'fve', 'FvH4_4g02630' => 'fve', 'FvH4_4g02640' => 'fve', 'FvH4_6g02650' => 'fve', 'Glyma.02G140600' => 'gma', 'Glyma.03G159900' => 'gma', 'Glyma.05G234800' => 'gma', 'Glyma.07G269600' => 'gma', 'Glyma.08G042300' => 'gma', 'Glyma.10G033500' => 'gma', 'Glyma.10G185200' => 'gma', 'Glyma.17G004300' => 'gma', 'Glyma.19G161900' => 'gma', 'Glyma.20G205100' => 'gma', 'Glyma.20G205200' => 'gma', 'Gohir.A01G139101' => 'ghi', 'Gohir.A02G035600' => 'ghi', 'Gohir.A02G117901' => 'ghi', 'Gohir.A07G210100' => 'ghi', 'Gohir.A07G210200' => 'ghi', 'Gohir.A08G061100' => 'ghi', 'Gohir.A09G223000' => 'ghi', 'Gohir.A09G223100' => 'ghi', 'Gohir.A10G113900' => 'ghi', 'Gohir.A10G114000' => 'ghi', 'Gohir.D02G042300' => 'ghi', 'Gohir.D07G216100' => 'ghi', 'Gohir.D07G216200' => 'ghi', 'Gohir.D08G070400' => 'ghi', 'Gohir.D09G225000' => 'ghi', 'Gohir.D09G225100' => 'ghi', 'Gohir.D10G152300' => 'ghi', 'Gohir.D10G153200' => 'ghi', 'Gohir.D11G133701' => 'ghi', 'Gorai.004G074100' => 'gra', 'Gorai.005G046800' => 'gra', 'Gorai.006G246500' => 'gra', 'Gorai.006G246600' => 'gra', 'Gorai.007G142900' => 'gra', 'Gorai.011G171000' => 'gra', 'Gorai.011G171100' => 'gra', 'Gorai.013G104300' => 'gra', 'Gorai.013G104400' => 'gra', 'GSVIVG01000754001' => 'vvi', 'GSVIVG01000756001' => 'vvi', 'GSVIVG01010903001' => 'vvi', 'GSVIVG01017623001' => 'vvi', 'GSVIVG01018113001' => 'vvi', 'GSVIVG01018116001' => 'vvi', 'GSVIVG01018118001' => 'vvi', 'HanXRQChr03g0076211' => 'han', 'HanXRQChr03g0092431' => 'han', 'HanXRQChr03g0092441' => 'han', 'HanXRQChr03g0092591' => 'han', 'HanXRQChr03g0092671' => 'han', 'HanXRQChr03g0092681' => 'han', 'HanXRQChr03g0092691' => 'han', 'HanXRQChr03g0092701' => 'han', 'HanXRQChr03g0092721' => 'han', 'HanXRQChr03g0092731' => 'han', 'HanXRQChr04g0113681' => 'han', 'HanXRQChr10g0281371' => 'han', 'HanXRQChr11g0337141' => 'han', 'HanXRQChr13g0424521' => 'han', 'HanXRQChr13g0424531' => 'han', 'HanXRQChr13g0424541' => 'han', 'HanXRQChr16g0498221' => 'han', 'Haze_04377' => 'cav', 'Haze_11298' => 'cav', 'Haze_24547' => 'cav', 'Haze_24550' => 'cav', 'Haze_26587' => 'cav', 'Hma1.2p1_0650F.1_g195410' => 'hma', 'Hma1.2p1_0893F.1_g233470' => 'hma', 'HPP92_006508' => 'vpl', 'HPP92_024780' => 'vpl', 'Hund02688' => 'sun', 'Hund09380' => 'sun', 'Hund09381' => 'sun', 'Hund09832' => 'sun', 'Hund09833' => 'sun', 'Hund11351' => 'sun', 'Hund11513' => 'sun', 'Lalb_Chr06g0162591' => 'lal', 'Lalb_Chr06g0162601' => 'lal', 'Lalb_Chr06g0169321' => 'lal', 'Lalb_Chr09g0330951' => 'lal', 'Lalb_Chr16g0387631' => 'lal', 'Lalb_Chr21g0306241' => 'lal', 'Lalb_Chr25g0290051' => 'lal', 'Lalb_Chr25g0290061' => 'lal', 'Lalb_Chr25g0290071' => 'lal', 'Lj1g0003876' => 'lja', 'Lj1P1207T36' => 'lonja', 'Lj2C1156G12' => 'lonja', 'Lj3A793G39' => 'lonja', 'Lj3C580G2' => 'lonja', 'Lj3C780G2' => 'lonja', 'Lj3C780T4' => 'lonja', 'Lj3C793G9' => 'lonja', 'Lj4g0012960' => 'lja', 'Lj5g0021252' => 'lja', 'Lj5g0021484' => 'lja', 'Lj5g0024528' => 'lja', 'Lj6A399T12' => 'lonja', 'Lj6A656G65' => 'lonja', 'Lsat_1_v5_gn_3_125500' => 'lsa', 'Lsat_1_v5_gn_3_125540' => 'lsa', 'Lsat_1_v5_gn_5_72701' => 'lsa', 'Lsat_1_v5_gn_8_91560' => 'lsa', 'Lsat_1_v5_gn_9_9640' => 'lsa', 'Manes.01G200600' => 'mes', 'Manes.01G200700' => 'mes', 'Manes.03G168900' => 'mes', 'Manes.03G169000' => 'mes', 'Manes.05G085801' => 'mes', 'Manes.05G086200' => 'mes', 'Manes.15G036700' => 'mes', 'Manes.15G036900' => 'mes', 'Mapoly0004s0172' => 'mpo', 'Mapoly0023s0001' => 'mpo', 'Mapoly0142s0012' => 'mpo', 'MBI01_g32854_MAGBIO' => 'mbi', 'MBI11_g24427_MAGBIO' => 'mbi', 'MBI11_g47319_MAGBIO' => 'mbi', 'MCO01G433' => 'mco', 'MD00G1187800' => 'mdo', 'MD04G1226500' => 'mdo', 'MD05G1203900' => 'mdo', 'MD10G1191100' => 'mdo', 'MD12G1243500' => 'mdo', 'MD13G1207000' => 'mdo', 'MD13G1207100' => 'mdo', 'MD16G1208600' => 'mdo', 'Medtr1g050352' => 'mtr', 'Medtr1g070385' => 'mtr', 'Medtr1g070450' => 'mtr', 'Medtr1g075200' => 'mtr', 'Medtr1g075250' => 'mtr', 'Medtr1g075260' => 'mtr', 'Medtr1g475250' => 'mtr', 'Medtr4g075450' => 'mtr', 'Medtr7g096300' => 'mtr', 'Medtr8g105110' => 'mtr', 'MELO3C006470.2' => 'cme', 'MELO3C006471.2' => 'cme', 'MELO3C020772.2' => 'cme', 'MELO3C026780.2' => 'cme', 'MELO3C026781.2' => 'cme', 'Migut.D00390' => 'egut', 'Migut.G00435' => 'egut', 'Migut.G00436' => 'egut', 'Migut.G00718' => 'egut', 'MSTRG.21891' => 'ama', 'MSTRG.26910' => 'ama', 'MSTRG.4099' => 'ama', 'MSTRG.9925' => 'ama', 'Nitab4.5_0000165g0010' => 'nta', 'Nitab4.5_0000209g0180' => 'nta', 'Nitab4.5_0000244g0440' => 'nta', 'Nitab4.5_0000525g0220' => 'nta', 'Nitab4.5_0001597g0020' => 'nta', 'Nitab4.5_0001878g0040' => 'nta', 'Nitab4.5_0001878g0060' => 'nta', 'Nitab4.5_0002838g0100' => 'nta', 'Nitab4.5_0002838g0120' => 'nta', 'Nitab4.5_0004798g0030' => 'nta', 'Nitab4.5_0005420g0010' => 'nta', 'Nitab4.5_0005507g0010' => 'nta', 'Nitab4.5_0005574g0020' => 'nta', 'Nitab4.5_0005838g0010' => 'nta', 'Nitab4.5_0010580g0020' => 'nta', 'Nn1g02599' => 'nnu', 'Nn1g02608' => 'nnu', 'Nn3g17742' => 'nnu', 'Nn3g19534' => 'nnu', 'Nn3g19535' => 'nnu', 'Oeu008790.1' => 'oeu', 'Oeu008792.1' => 'oeu', 'Oeu032590.1' => 'oeu', 'Oeu035349.1' => 'oeu', 'Oeu049791.1' => 'oeu', 'Os01g0774500' => 'osa', 'Os03g0628800' => 'osa', 'Os03g0798600' => 'osa', 'Os05g0508800' => 'osa', 'Peaxi162Scf00036g02018' => 'pax', 'Peaxi162Scf00578g00032' => 'pax', 'Peaxi162Scf00578g00317' => 'pax', 'Peaxi162Scf00785g00114' => 'pax', 'Peaxi162Scf00813g00119' => 'pax', 'Peaxi162Scf00906g00227' => 'pax', 'PGR004G0875' => 'pgr', 'PGR004G2424' => 'pgr', 'PGR031G1239' => 'pgr', 'PGR031G2474' => 'pgr', 'PGR044G0423' => 'pgr', 'PGSC0003DMG400001128' => 'stu', 'PGSC0003DMG400007336' => 'stu', 'PGSC0003DMG400016318' => 'stu', 'PGSC0003DMG400016319' => 'stu', 'PGSC0003DMG400018074' => 'stu', 'Phvul.001G157700' => 'pvu', 'Phvul.002G148550' => 'pvu', 'Phvul.002G320200' => 'pvu', 'Phvul.003G089200' => 'pvu', 'Phvul.007G126000' => 'pvu', 'Phvul.007G126100' => 'pvu', 'Phvul.007G178000' => 'pvu', 'Phvul.007G178200' => 'pvu', 'Potri.002G043000' => 'ptr', 'Potri.002G043200' => 'ptr', 'Potri.003G123750' => 'ptr', 'Potri.005G055401' => 'ptr', 'Potri.005G219700' => 'ptr', 'Potri.005G220000' => 'ptr', 'Potri.008G161901' => 'ptr', 'Potri.008G162000' => 'ptr', 'Potri.008G162400' => 'ptr', 'Potri.010G076900' => 'ptr', 'Pp3c12_9180' => 'ppa', 'Pp3c13_19770' => 'ppa', 'Pp3c14_22950' => 'ppa', 'Pp3c16_12160' => 'ppa', 'Pp3c27_7820' => 'ppa', 'Pp3c2_3490' => 'ppa', 'Pp3c3_23700' => 'ppa', 'Pp3c3_36520' => 'ppa', 'Pp3c4_15250' => 'ppa', 'PRCOL_00007002' => 'pco', 'Prupe.1G030600' => 'ppe', 'Prupe.1G030700' => 'ppe', 'Prupe.6G345200' => 'ppe', 'Prupe.8G230300' => 'ppe', 'Prupe.8G230500' => 'ppe', 'Psat3g059600' => 'psa', 'Psat5g200920' => 'psa', 'Psat6g056440' => 'psa', 'Psat6g057360' => 'psa', 'Psat6g134120' => 'psa', 'Psat6g134160' => 'psa', 'Psat7g008640' => 'psa', 'Psat7g185240' => 'psa', 'PSO017G1330' => 'pso', 'PSO063G6097' => 'pso', 'PSO170G0835' => 'pso', 'PSO170G2499' => 'pso', 'PSO210G5058' => 'pso', 'PSO210G6154' => 'pso', 'PSO585G0031' => 'pso', 'PSO832G0264' => 'pso', 'PSO832G4288' => 'pso', 'QL03p027355' => 'qlo', 'QL03p027430' => 'qlo', 'QL04p081380' => 'qlo', 'QL06p015642' => 'qlo', 'QL06p015650' => 'qlo', 'QL06p015686' => 'qlo', 'QL12p042927' => 'qlo', 'QL93p1863_0035' => 'qlo', 'RcHm_v2.0_Chr3g0450581' => 'rch', 'RcHm_v2.0_Chr4g0390371' => 'rch', 'RcHm_v2.0_Chr4g0390381' => 'rch', 'RcHm_v2.0_Chr4g0390491' => 'rch', 'RcHm_v2.0_Chr4g0390501' => 'rch', 'RcHm_v2.0_Chr6g0289231' => 'rch', 'Rhsim04G0190400' => 'rsi', 'Rhsim04G0190500' => 'rsi', 'Rhsim04G0190600' => 'rsi', 'Rhsim13G0031400' => 'rsi', 'Rhsim13G0165600' => 'rsi', 'RhsimUnG0114600' => 'rsi', 'RhsimUnG0114700' => 'rsi', 'Sabra02G0034800' => 'sbr', 'Sabra02G0035100' => 'sbr', 'Sabra05G0168600' => 'sbr', 'Sabra05G0168800' => 'sbr', 'Sabra08G0123700' => 'sbr', 'Sabra10G0031900' => 'sbr', 'Sabra13G0039000' => 'sbr', 'SalBow2G0782' => 'sbo', 'SalBow2G1403' => 'sbo', 'SalBow4G0074' => 'sbo', 'SalBow4G2635' => 'sbo', 'SalBow5G3010' => 'sbo', 'Sc05g0000870' => 'sci', 'Sc05g0000890' => 'sci', 'Sc13g0005000' => 'sci', 'Sc13g0005030' => 'sci', 'Sc19g0003790' => 'sci', 'Sc19g0003800' => 'sci', 'Sed0003467' => 'sed', 'Sed0009355' => 'sed', 'Sed0009894' => 'sed', 'Sed0011972' => 'sed', 'Sed0021483' => 'sed', 'Sed0021750' => 'sed', 'Sed0026279' => 'sed', 'SEGI_05312' => 'sgi', 'SEGI_10112' => 'sgi', 'SEGI_15835' => 'sgi', 'SEGI_30386' => 'sgi', 'SEGI_34122' => 'sgi', 'SEGI_35063' => 'sgi', 'SGA_v2.0_scaffold101G29794' => 'sas', 'SGA_v2.0_scaffold1G00573' => 'sas', 'SGA_v2.0_scaffold79G25637' => 'sas', 'SGA_v2.0_scaffold88G27283' => 'sas', 'SGA_v2.0_scaffold88G27285' => 'sas', 'SGA_v2.0_scaffold88G27331' => 'sas', 'SHI09937' => 'shi', 'SMO119G0302' => 'smo', 'SMO137G0231' => 'smo', 'SMO367G1151' => 'smo', 'Solyc02g082000.3' => 'sly', 'Solyc06g031670.3' => 'sly', 'Solyc06g053810.3' => 'sly', 'Solyc07g025457.1' => 'sly', 'Solyc08g059740.1' => 'sly', 'Solyc08g059750.3' => 'sly', 'Solyc09g083370.3' => 'sly', 'Solyc12g038950.3' => 'sly', 'Sopen02g026630' => 'spe', 'Sopen06g018930' => 'spe', 'Sopen06g018940' => 'spe', 'Sopen08g009460' => 'spe', 'Sopen09g032290' => 'spe', 'Sp1g03080' => 'spa', 'Sp1g03090' => 'spa', 'Sp1g05480' => 'spa', 'Sp2g07860' => 'spa', 'Sp2g08430' => 'spa', 'Sp2g08440' => 'spa', 'Sp2g26200' => 'spa', 'Sp4g13170' => 'spa', 'Sp6g33840' => 'spa', 'SpUn1204_0010' => 'spa', 'TAR365G0908' => 'tar', 'TAR381G1270' => 'tar', 'TAR381G1651' => 'tar', 'TAR625G1131' => 'tar', 'TAR633G0962' => 'tar', 'TAR633G1729' => 'tar', 'TAR633G1864' => 'tar', 'TAR636G0221' => 'tar', 'TAR636G0314' => 'tar', 'TAR636G3202' => 'tar', 'THA.LOC104800805' => 'tha', 'THA.LOC104801096' => 'tha', 'THA.LOC104801555' => 'tha', 'THA.LOC104808491' => 'tha', 'THA.LOC104808595' => 'tha', 'THA.LOC104815985' => 'tha', 'THA.LOC104822250' => 'tha', 'THA.LOC104826071' => 'tha', 'Thecc.01G265200' => 'tca', 'Thecc.01G265300' => 'tca', 'Thecc.01G265700' => 'tca', 'Thecc.03G109100' => 'tca', 'Thecc.04G245900' => 'tca', 'Thecc.04G246000' => 'tca', 'Thhalv10003334m.g' => 'esa', 'Thhalv10005508m.g' => 'esa', 'Thhalv10005643m.g' => 'esa', 'Thhalv10007316m.g' => 'esa', 'Thhalv10009006m.g' => 'esa', 'Thhalv10009309m.g' => 'esa', 'Thhalv10014917m.g' => 'esa', 'Thhalv10014919m.g' => 'esa', 'Thhalv10015393m.g' => 'esa', 'Thhalv10016515m.g' => 'esa', 'Thhalv10029242m.g' => 'esa', 'TPR.G16654' => 'tpr', 'TPR.G20589' => 'tpr', 'TPR.G23029' => 'tpr', 'TPR.G27731' => 'tpr', 'TPR.G28889' => 'tpr', 'TPR.G28899' => 'tpr', 'TPR.G30846' => 'tpr', 'TPR.G5452' => 'tpr', 'TPR.G5713' => 'tpr', 'TPR.G9046' => 'tpr', 'TPR.G9061' => 'tpr', 'TWI09G1075' => 'twi', 'TWI12G0806' => 'twi', 'TWI18G0108' => 'twi', 'TWI53G1361' => 'twi', 'TWI73G0185' => 'twi', 'TWI73G0427' => 'twi', 'unitig_37.g12001' => 'ugi', 'unitig_747.g21660' => 'ugi', 'unitig_748.g7232' => 'ugi', 'unitig_748.g7315' => 'ugi', 'unitig_85.g27262' => 'ugi', 'unitig_92.g28220' => 'ugi', 'vmacro02632' => 'vma', 'vmacro08410' => 'vma', 'vmacro08411' => 'vma', 'vmacro15407' => 'vma', 'VMungo0251G3619' => 'vmu', 'VMungo0720G1204' => 'vmu', 'VMungo0720G1918' => 'vmu', 'VMungo0720G2387' => 'vmu', 'VMungo0720G2961' => 'vmu', 'VMungo1215G2154' => 'vmu', 'VMungo1383G2411' => 'vmu', 'Zm00001eb051130' => 'zma', 'Zm00001eb116830' => 'zma', 'Zm00001eb116850' => 'zma', 'Zm00001eb151740' => 'zma', 'Zm00001eb292360' => 'zma', 'Zm00001eb301640' => 'zma' ), 'gf_id' => 'HOM05D000856', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000856' ), 'data_identifier' => 'HOM05D000856', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000856', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p00010' => 'bna', 'A03p04160' => 'bna', 'A03p17160' => 'bna', 'A04p23370' => 'bna', 'A05p14860' => 'bna', 'A08p37020' => 'bna', 'A09p08050' => 'bna', 'A09p66800' => 'bna', 'A09p67940' => 'bna', 'A10p02680' => 'bna', 'A10p05320' => 'bna', 'Aa31LG1G20560' => 'aar', 'Aa31LG1G20610' => 'aar', 'Aa31LG1G7810' => 'aar', 'Aa31LG5G3590' => 'aar', 'Aa31LG5G6140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3819' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4683' => 'aag', 'Actinidia04480' => 'ach', 'Actinidia05466' => 'ach', 'Actinidia08445' => 'ach', 'Actinidia21170' => 'ach', 'Actinidia24812' => 'ach', 'Actinidia24951' => 'ach', 'Actinidia40088' => 'ach', 'Ah.02g111660' => 'amhyb', 'Ah.11g048900' => 'amhyb', 'Ah.11g049910' => 'amhyb', 'AL1G13870' => 'aly', 'AL1G13880' => 'aly', 'AL1G16760' => 'aly', 'AL390U10020' => 'aly', 'AL4G25520' => 'aly', 'AL6G19890' => 'aly', 'AL6G19900' => 'aly', 'AL6G19910' => 'aly', 'AL8G40100' => 'aly', 'Aqoxy2G03562' => 'aox', 'Aqoxy5G00316' => 'aox', 'Aqoxy5G00926' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1628KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1H403S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2FU6SJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.882I6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8YRY2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YN1SN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AF70II' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZA8L1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F916KL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHRD8H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KTZ8QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S22EMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8M29T' => 'arhy', 'AT1G04270' => 'ath', 'AT1G04280' => 'ath', 'AT1G06750' => 'ath', 'AT1G33850' => 'ath', 'AT2G30630' => 'ath', 'AT5G09490' => 'ath', 'AT5G09500' => 'ath', 'AT5G09510' => 'ath', 'AT5G43640' => 'ath', 'AT5G63070' => 'ath', 'ATR0605G315' => 'atr', 'Atru.chr11.175' => 'acertr', 'Atru.chr11.653' => 'acertr', 'Atru.chr3.1616' => 'acertr', 'Atru.chr4.2230' => 'acertr', 'Atru.chr4.2232' => 'acertr', 'Atru.chr5.1598' => 'acertr', 'Atru.chr5.1600' => 'acertr', 'Atru.chr5.2188' => 'acertr', 'AUR62008326' => 'cqu', 'AUR62011922' => 'cqu', 'AUR62011924' => 'cqu', 'AUR62021771' => 'cqu', 'AUR62032237' => 'cqu', 'AUR62032240' => 'cqu', 'BcaB01g05572' => 'bca', 'BcaB02g10337' => 'bca', 'BcaB04g19944' => 'bca', 'BcaB05g21548' => 'bca', 'BcaB05g21549' => 'bca', 'BcaB05g23227' => 'bca', 'BcaB06g26256' => 'bca', 'BcaB06g26257' => 'bca', 'BcaB06g28379' => 'bca', 'BcaC02g11159' => 'bca', 'BcaC03g13258' => 'bca', 'BcaC03g13259' => 'bca', 'BcaC05g24456' => 'bca', 'BcaC05g24457' => 'bca', 'BcaC07g36922' => 'bca', 'BcaC07g36923' => 'bca', 'BcaC07g42050' => 'bca', 'BcaC07g42176' => 'bca', 'BcaC07g42195' => 'bca', 'BcaC07g42196' => 'bca', 'BcaNung06674' => 'bca', 'BolC2t06351H' => 'bol', 'BolC2t06352H' => 'bol', 'BolC3t12993H' => 'bol', 'BolC4t23525H' => 'bol', 'BolC4t27475H' => 'bol', 'BolC5t29025H' => 'bol', 'BolC5t29026H' => 'bol', 'BolC8t46898H' => 'bol', 'BolC8t46899H' => 'bol', 'BolC8t52630H' => 'bol', 'BolC8t52765H' => 'bol', 'BolC9t53824H' => 'bol', 'BraA03t09760Z' => 'bra', 'BraA03t10990Z' => 'bra', 'BraA05t20413Z' => 'bra', 'BraA08t35602Z' => 'bra', 'BraA09t36458Z' => 'bra', 'BraA09t42018Z' => 'bra', 'BraA09t42129Z' => 'bra', 'BraA10t42536Z' => 'bra', 'BraA10t42537Z' => 'bra', 'C01p10690' => 'bna', 'C02p03890' => 'bna', 'C02p03900' => 'bna', 'C03p04620' => 'bna', 'C04p19870' => 'bna', 'C04p59670' => 'bna', 'C05p02460' => 'bna', 'C05p02470' => 'bna', 'C08p00980' => 'bna', 'C08p00990' => 'bna', 'C08p51030' => 'bna', 'C08p52360' => 'bna', 'C09p09120' => 'bna', 'CAN.G19.15' => 'can', 'CAN.G251.10' => 'can', 'CAN.G251.9' => 'can', 'CAN.G398.24' => 'can', 'CAN.G410.32' => 'can', 'CAN.G881.2' => 'can', 'CANSAT01G3025' => 'cansat', 'CANSAT78G1211' => 'cansat', 'CANSAT78G1218' => 'cansat', 'CANSAT78G1521' => 'cansat', 'CANSAT78G1670' => 'cansat', 'CARHR003600' => 'chi', 'CARHR003610' => 'chi', 'CARHR006290' => 'chi', 'CARHR006430' => 'chi', 'CARHR124110' => 'chi', 'CARHR203870' => 'chi', 'CARHR203880' => 'chi', 'CARHR203890' => 'chi', 'CARHR276880' => 'chi', 'Carub.0001s0346' => 'cru', 'Carub.0001s0347' => 'cru', 'Carub.0001s0607' => 'cru', 'Carub.0003s2768' => 'cru', 'Carub.0003s2769' => 'cru', 'Carub.0004s1178' => 'cru', 'Carub.0006s0806' => 'cru', 'Carub.0006s0807' => 'cru', 'Carub.0006s0808' => 'cru', 'Carub.0008s0501' => 'cru', 'Carub.0008s2379' => 'cru', 'Ca_08655_v3' => 'car', 'Ca_08922_v3' => 'car', 'Ca_08923_v3' => 'car', 'Ca_09119_v3' => 'car', 'Ca_09703_v3' => 'car', 'Ca_09705_v3' => 'car', 'Ca_09835_v3' => 'car', 'Ca_26403_v3' => 'car', 'Ca_30719_v3' => 'car', 'CBR_g17958' => 'cbr', 'CBR_g40516' => 'cbr', 'Cc00_g05350' => 'ccan', 'Cc01_g18690' => 'ccan', 'Cc03_g04830' => 'ccan', 'Cc03_g04850' => 'ccan', 'CDE02G4469' => 'cde', 'CDE06G0883' => 'cde', 'CDE06G1295' => 'cde', 'CDE06G1390' => 'cde', 'CDE07G0584' => 'cde', 'CDE07G1084' => 'cde', 'CDE08G1259' => 'cde', 'Cfa002341' => 'cfa', 'Cfa024337' => 'cfa', 'Ciclev10004749m.g' => 'ccl', 'Ciclev10006127m.g' => 'ccl', 'Ciclev10019720m.g' => 'ccl', 'Ciclev10022652m.g' => 'ccl', 'CiPaw.01G190400' => 'cil', 'CiPaw.01G190500' => 'cil', 'CiPaw.02G116400' => 'cil', 'CiPaw.02G116500' => 'cil', 'CiPaw.04G183000' => 'cil', 'CiPaw.04G183300' => 'cil', 'ClCG05G004610' => 'cla', 'ClCG05G004620' => 'cla', 'ClCG06G006730' => 'cla', 'ClCG06G006740' => 'cla', 'ClCG11G003690' => 'cla', 'COL.COLO4_08276' => 'col', 'COL.COLO4_08277' => 'col', 'COL.COLO4_15787' => 'col', 'COL.COLO4_15789' => 'col', 'Cpa.g.c44815' => 'cpa', 'Cpa.g.sc52.144' => 'cpa', 'Cpa.g.sc58.46' => 'cpa', 'Cpa.g.sc58.47' => 'cpa', 'Cre08.g360900' => 'cre', 'CsaV3_2G013030' => 'csa', 'CsaV3_2G013050' => 'csa', 'CsaV3_2G015620' => 'csa', 'CsaV3_3G012590' => 'csa', 'CsaV3_3G012600' => 'csa', 'CSS0001641' => 'camsi', 'CSS0008310' => 'camsi', 'CSS0013011' => 'camsi', 'CSS0017147' => 'camsi', 'CSS0022970' => 'camsi', 'CSS0025655' => 'camsi', 'CSS0028665' => 'camsi', 'CSS0029117' => 'camsi', 'CSS0032024' => 'camsi', 'CSS0039681' => 'camsi', 'CSS0046516' => 'camsi', 'CSS0050307' => 'camsi', 'DCAR_005871' => 'dca', 'DCAR_007342' => 'dca', 'DCAR_024228' => 'dca', 'DCAR_027277' => 'dca', 'DCAR_030718' => 'dca', 'Dinv20287' => 'din', 'Dinv22461' => 'din', 'Dinv22464' => 'din', 'Dinv29912' => 'din', 'Dinv29913' => 'din', 'Dinv34580' => 'din', 'Dinv34582' => 'din', 'Dinv44632' => 'din', 'Duzib052G0266' => 'dzi', 'Duzib133G0907' => 'dzi', 'Duzib133G1034' => 'dzi', 'Duzib138G0207' => 'dzi', 'Duzib138G0491' => 'dzi', 'Duzib151G0812' => 'dzi', 'Duzib151G1166' => 'dzi', 'Duzib168G0192' => 'dzi', 'Duzib211G0077' => 'dzi', 'Duzib212G0429' => 'dzi', 'Duzib212G0472' => 'dzi', 'ECA233G2617' => 'eca', 'ECA236G4188' => 'eca', 'ECA240G0936' => 'eca', 'ECA240G1129' => 'eca', 'ECA247G0623' => 'eca', 'EL10Ac5g10451' => 'bvu', 'EL10Ac5g10453' => 'bvu', 'EL10Ac5g10894' => 'bvu', 'Eucgr.H00192' => 'egr', 'Eucgr.H00193' => 'egr', 'Eucgr.H00194' => 'egr', 'Eucgr.J01562' => 'egr', 'Eucgr.K03301' => 'egr', 'FAN02G0632' => 'fan', 'FAN05G5378' => 'fan', 'FAN09G3247' => 'fan', 'FAN12G0435' => 'fan', 'FAN12G2426' => 'fan', 'FAN14G1707' => 'fan', 'FAN14G4725' => 'fan', 'FAN15G2071' => 'fan', 'FAN17G3065' => 'fan', 'FAN19G1376' => 'fan', 'FAN20G0354' => 'fan', 'FAN20G2429' => 'fan', 'FAN20G2658' => 'fan', 'FAN24G2343' => 'fan', 'FAN27G2362' => 'fan', 'FAN28G1765' => 'fan', 'FvH4_1g16020' => 'fve', 'FvH4_2g04890' => 'fve', 'FvH4_2g22270' => 'fve', 'FvH4_4g02630' => 'fve', 'FvH4_4g02640' => 'fve', 'FvH4_6g02650' => 'fve', 'Glyma.02G140600' => 'gma', 'Glyma.03G159900' => 'gma', 'Glyma.05G234800' => 'gma', 'Glyma.07G269600' => 'gma', 'Glyma.08G042300' => 'gma', 'Glyma.10G033500' => 'gma', 'Glyma.10G185200' => 'gma', 'Glyma.17G004300' => 'gma', 'Glyma.19G161900' => 'gma', 'Glyma.20G205100' => 'gma', 'Glyma.20G205200' => 'gma', 'Gohir.A01G139101' => 'ghi', 'Gohir.A02G035600' => 'ghi', 'Gohir.A02G117901' => 'ghi', 'Gohir.A07G210100' => 'ghi', 'Gohir.A07G210200' => 'ghi', 'Gohir.A08G061100' => 'ghi', 'Gohir.A09G223000' => 'ghi', 'Gohir.A09G223100' => 'ghi', 'Gohir.A10G113900' => 'ghi', 'Gohir.A10G114000' => 'ghi', 'Gohir.D02G042300' => 'ghi', 'Gohir.D07G216100' => 'ghi', 'Gohir.D07G216200' => 'ghi', 'Gohir.D08G070400' => 'ghi', 'Gohir.D09G225000' => 'ghi', 'Gohir.D09G225100' => 'ghi', 'Gohir.D10G152300' => 'ghi', 'Gohir.D10G153200' => 'ghi', 'Gohir.D11G133701' => 'ghi', 'Gorai.004G074100' => 'gra', 'Gorai.005G046800' => 'gra', 'Gorai.006G246500' => 'gra', 'Gorai.006G246600' => 'gra', 'Gorai.007G142900' => 'gra', 'Gorai.011G171000' => 'gra', 'Gorai.011G171100' => 'gra', 'Gorai.013G104300' => 'gra', 'Gorai.013G104400' => 'gra', 'GSVIVG01000754001' => 'vvi', 'GSVIVG01000756001' => 'vvi', 'GSVIVG01010903001' => 'vvi', 'GSVIVG01017623001' => 'vvi', 'GSVIVG01018113001' => 'vvi', 'GSVIVG01018116001' => 'vvi', 'GSVIVG01018118001' => 'vvi', 'HanXRQChr03g0076211' => 'han', 'HanXRQChr03g0092431' => 'han', 'HanXRQChr03g0092441' => 'han', 'HanXRQChr03g0092591' => 'han', 'HanXRQChr03g0092671' => 'han', 'HanXRQChr03g0092681' => 'han', 'HanXRQChr03g0092691' => 'han', 'HanXRQChr03g0092701' => 'han', 'HanXRQChr03g0092721' => 'han', 'HanXRQChr03g0092731' => 'han', 'HanXRQChr04g0113681' => 'han', 'HanXRQChr10g0281371' => 'han', 'HanXRQChr11g0337141' => 'han', 'HanXRQChr13g0424521' => 'han', 'HanXRQChr13g0424531' => 'han', 'HanXRQChr13g0424541' => 'han', 'HanXRQChr16g0498221' => 'han', 'Haze_04377' => 'cav', 'Haze_11298' => 'cav', 'Haze_24547' => 'cav', 'Haze_24550' => 'cav', 'Haze_26587' => 'cav', 'Hma1.2p1_0650F.1_g195410' => 'hma', 'Hma1.2p1_0893F.1_g233470' => 'hma', 'HPP92_006508' => 'vpl', 'HPP92_024780' => 'vpl', 'Hund02688' => 'sun', 'Hund09380' => 'sun', 'Hund09381' => 'sun', 'Hund09832' => 'sun', 'Hund09833' => 'sun', 'Hund11351' => 'sun', 'Hund11513' => 'sun', 'Lalb_Chr06g0162591' => 'lal', 'Lalb_Chr06g0162601' => 'lal', 'Lalb_Chr06g0169321' => 'lal', 'Lalb_Chr09g0330951' => 'lal', 'Lalb_Chr16g0387631' => 'lal', 'Lalb_Chr21g0306241' => 'lal', 'Lalb_Chr25g0290051' => 'lal', 'Lalb_Chr25g0290061' => 'lal', 'Lalb_Chr25g0290071' => 'lal', 'Lj1g0003876' => 'lja', 'Lj1P1207T36' => 'lonja', 'Lj2C1156G12' => 'lonja', 'Lj3A793G39' => 'lonja', 'Lj3C580G2' => 'lonja', 'Lj3C780G2' => 'lonja', 'Lj3C780T4' => 'lonja', 'Lj3C793G9' => 'lonja', 'Lj4g0012960' => 'lja', 'Lj5g0021252' => 'lja', 'Lj5g0021484' => 'lja', 'Lj5g0024528' => 'lja', 'Lj6A399T12' => 'lonja', 'Lj6A656G65' => 'lonja', 'Lsat_1_v5_gn_3_125500' => 'lsa', 'Lsat_1_v5_gn_3_125540' => 'lsa', 'Lsat_1_v5_gn_5_72701' => 'lsa', 'Lsat_1_v5_gn_8_91560' => 'lsa', 'Lsat_1_v5_gn_9_9640' => 'lsa', 'Manes.01G200600' => 'mes', 'Manes.01G200700' => 'mes', 'Manes.03G168900' => 'mes', 'Manes.03G169000' => 'mes', 'Manes.05G085801' => 'mes', 'Manes.05G086200' => 'mes', 'Manes.15G036700' => 'mes', 'Manes.15G036900' => 'mes', 'Mapoly0004s0172' => 'mpo', 'Mapoly0023s0001' => 'mpo', 'Mapoly0142s0012' => 'mpo', 'MBI01_g32854_MAGBIO' => 'mbi', 'MBI11_g24427_MAGBIO' => 'mbi', 'MBI11_g47319_MAGBIO' => 'mbi', 'MCO01G433' => 'mco', 'MD00G1187800' => 'mdo', 'MD04G1226500' => 'mdo', 'MD05G1203900' => 'mdo', 'MD10G1191100' => 'mdo', 'MD12G1243500' => 'mdo', 'MD13G1207000' => 'mdo', 'MD13G1207100' => 'mdo', 'MD16G1208600' => 'mdo', 'Medtr1g050352' => 'mtr', 'Medtr1g070385' => 'mtr', 'Medtr1g070450' => 'mtr', 'Medtr1g075200' => 'mtr', 'Medtr1g075250' => 'mtr', 'Medtr1g075260' => 'mtr', 'Medtr1g475250' => 'mtr', 'Medtr4g075450' => 'mtr', 'Medtr7g096300' => 'mtr', 'Medtr8g105110' => 'mtr', 'MELO3C006470.2' => 'cme', 'MELO3C006471.2' => 'cme', 'MELO3C020772.2' => 'cme', 'MELO3C026780.2' => 'cme', 'MELO3C026781.2' => 'cme', 'Migut.D00390' => 'egut', 'Migut.G00435' => 'egut', 'Migut.G00436' => 'egut', 'Migut.G00718' => 'egut', 'MSTRG.21891' => 'ama', 'MSTRG.26910' => 'ama', 'MSTRG.4099' => 'ama', 'MSTRG.9925' => 'ama', 'Nitab4.5_0000165g0010' => 'nta', 'Nitab4.5_0000209g0180' => 'nta', 'Nitab4.5_0000244g0440' => 'nta', 'Nitab4.5_0000525g0220' => 'nta', 'Nitab4.5_0001597g0020' => 'nta', 'Nitab4.5_0001878g0040' => 'nta', 'Nitab4.5_0001878g0060' => 'nta', 'Nitab4.5_0002838g0100' => 'nta', 'Nitab4.5_0002838g0120' => 'nta', 'Nitab4.5_0004798g0030' => 'nta', 'Nitab4.5_0005420g0010' => 'nta', 'Nitab4.5_0005507g0010' => 'nta', 'Nitab4.5_0005574g0020' => 'nta', 'Nitab4.5_0005838g0010' => 'nta', 'Nitab4.5_0010580g0020' => 'nta', 'Nn1g02599' => 'nnu', 'Nn1g02608' => 'nnu', 'Nn3g17742' => 'nnu', 'Nn3g19534' => 'nnu', 'Nn3g19535' => 'nnu', 'Oeu008790.1' => 'oeu', 'Oeu008792.1' => 'oeu', 'Oeu032590.1' => 'oeu', 'Oeu035349.1' => 'oeu', 'Oeu049791.1' => 'oeu', 'Os01g0774500' => 'osa', 'Os03g0628800' => 'osa', 'Os03g0798600' => 'osa', 'Os05g0508800' => 'osa', 'Peaxi162Scf00036g02018' => 'pax', 'Peaxi162Scf00578g00032' => 'pax', 'Peaxi162Scf00578g00317' => 'pax', 'Peaxi162Scf00785g00114' => 'pax', 'Peaxi162Scf00813g00119' => 'pax', 'Peaxi162Scf00906g00227' => 'pax', 'PGR004G0875' => 'pgr', 'PGR004G2424' => 'pgr', 'PGR031G1239' => 'pgr', 'PGR031G2474' => 'pgr', 'PGR044G0423' => 'pgr', 'PGSC0003DMG400001128' => 'stu', 'PGSC0003DMG400007336' => 'stu', 'PGSC0003DMG400016318' => 'stu', 'PGSC0003DMG400016319' => 'stu', 'PGSC0003DMG400018074' => 'stu', 'Phvul.001G157700' => 'pvu', 'Phvul.002G148550' => 'pvu', 'Phvul.002G320200' => 'pvu', 'Phvul.003G089200' => 'pvu', 'Phvul.007G126000' => 'pvu', 'Phvul.007G126100' => 'pvu', 'Phvul.007G178000' => 'pvu', 'Phvul.007G178200' => 'pvu', 'Potri.002G043000' => 'ptr', 'Potri.002G043200' => 'ptr', 'Potri.003G123750' => 'ptr', 'Potri.005G055401' => 'ptr', 'Potri.005G219700' => 'ptr', 'Potri.005G220000' => 'ptr', 'Potri.008G161901' => 'ptr', 'Potri.008G162000' => 'ptr', 'Potri.008G162400' => 'ptr', 'Potri.010G076900' => 'ptr', 'Pp3c12_9180' => 'ppa', 'Pp3c13_19770' => 'ppa', 'Pp3c14_22950' => 'ppa', 'Pp3c16_12160' => 'ppa', 'Pp3c27_7820' => 'ppa', 'Pp3c2_3490' => 'ppa', 'Pp3c3_23700' => 'ppa', 'Pp3c3_36520' => 'ppa', 'Pp3c4_15250' => 'ppa', 'PRCOL_00007002' => 'pco', 'Prupe.1G030600' => 'ppe', 'Prupe.1G030700' => 'ppe', 'Prupe.6G345200' => 'ppe', 'Prupe.8G230300' => 'ppe', 'Prupe.8G230500' => 'ppe', 'Psat3g059600' => 'psa', 'Psat5g200920' => 'psa', 'Psat6g056440' => 'psa', 'Psat6g057360' => 'psa', 'Psat6g134120' => 'psa', 'Psat6g134160' => 'psa', 'Psat7g008640' => 'psa', 'Psat7g185240' => 'psa', 'PSO017G1330' => 'pso', 'PSO063G6097' => 'pso', 'PSO170G0835' => 'pso', 'PSO170G2499' => 'pso', 'PSO210G5058' => 'pso', 'PSO210G6154' => 'pso', 'PSO585G0031' => 'pso', 'PSO832G0264' => 'pso', 'PSO832G4288' => 'pso', 'QL03p027355' => 'qlo', 'QL03p027430' => 'qlo', 'QL04p081380' => 'qlo', 'QL06p015642' => 'qlo', 'QL06p015650' => 'qlo', 'QL06p015686' => 'qlo', 'QL12p042927' => 'qlo', 'QL93p1863_0035' => 'qlo', 'RcHm_v2.0_Chr3g0450581' => 'rch', 'RcHm_v2.0_Chr4g0390371' => 'rch', 'RcHm_v2.0_Chr4g0390381' => 'rch', 'RcHm_v2.0_Chr4g0390491' => 'rch', 'RcHm_v2.0_Chr4g0390501' => 'rch', 'RcHm_v2.0_Chr6g0289231' => 'rch', 'Rhsim04G0190400' => 'rsi', 'Rhsim04G0190500' => 'rsi', 'Rhsim04G0190600' => 'rsi', 'Rhsim13G0031400' => 'rsi', 'Rhsim13G0165600' => 'rsi', 'RhsimUnG0114600' => 'rsi', 'RhsimUnG0114700' => 'rsi', 'Sabra02G0034800' => 'sbr', 'Sabra02G0035100' => 'sbr', 'Sabra05G0168600' => 'sbr', 'Sabra05G0168800' => 'sbr', 'Sabra08G0123700' => 'sbr', 'Sabra10G0031900' => 'sbr', 'Sabra13G0039000' => 'sbr', 'SalBow2G0782' => 'sbo', 'SalBow2G1403' => 'sbo', 'SalBow4G0074' => 'sbo', 'SalBow4G2635' => 'sbo', 'SalBow5G3010' => 'sbo', 'Sc05g0000870' => 'sci', 'Sc05g0000890' => 'sci', 'Sc13g0005000' => 'sci', 'Sc13g0005030' => 'sci', 'Sc19g0003790' => 'sci', 'Sc19g0003800' => 'sci', 'Sed0003467' => 'sed', 'Sed0009355' => 'sed', 'Sed0009894' => 'sed', 'Sed0011972' => 'sed', 'Sed0021483' => 'sed', 'Sed0021750' => 'sed', 'Sed0026279' => 'sed', 'SEGI_05312' => 'sgi', 'SEGI_10112' => 'sgi', 'SEGI_15835' => 'sgi', 'SEGI_30386' => 'sgi', 'SEGI_34122' => 'sgi', 'SEGI_35063' => 'sgi', 'SGA_v2.0_scaffold101G29794' => 'sas', 'SGA_v2.0_scaffold1G00573' => 'sas', 'SGA_v2.0_scaffold79G25637' => 'sas', 'SGA_v2.0_scaffold88G27283' => 'sas', 'SGA_v2.0_scaffold88G27285' => 'sas', 'SGA_v2.0_scaffold88G27331' => 'sas', 'SHI09937' => 'shi', 'SMO119G0302' => 'smo', 'SMO137G0231' => 'smo', 'SMO367G1151' => 'smo', 'Solyc02g082000.3' => 'sly', 'Solyc06g031670.3' => 'sly', 'Solyc06g053810.3' => 'sly', 'Solyc07g025457.1' => 'sly', 'Solyc08g059740.1' => 'sly', 'Solyc08g059750.3' => 'sly', 'Solyc09g083370.3' => 'sly', 'Solyc12g038950.3' => 'sly', 'Sopen02g026630' => 'spe', 'Sopen06g018930' => 'spe', 'Sopen06g018940' => 'spe', 'Sopen08g009460' => 'spe', 'Sopen09g032290' => 'spe', 'Sp1g03080' => 'spa', 'Sp1g03090' => 'spa', 'Sp1g05480' => 'spa', 'Sp2g07860' => 'spa', 'Sp2g08430' => 'spa', 'Sp2g08440' => 'spa', 'Sp2g26200' => 'spa', 'Sp4g13170' => 'spa', 'Sp6g33840' => 'spa', 'SpUn1204_0010' => 'spa', 'TAR365G0908' => 'tar', 'TAR381G1270' => 'tar', 'TAR381G1651' => 'tar', 'TAR625G1131' => 'tar', 'TAR633G0962' => 'tar', 'TAR633G1729' => 'tar', 'TAR633G1864' => 'tar', 'TAR636G0221' => 'tar', 'TAR636G0314' => 'tar', 'TAR636G3202' => 'tar', 'THA.LOC104800805' => 'tha', 'THA.LOC104801096' => 'tha', 'THA.LOC104801555' => 'tha', 'THA.LOC104808491' => 'tha', 'THA.LOC104808595' => 'tha', 'THA.LOC104815985' => 'tha', 'THA.LOC104822250' => 'tha', 'THA.LOC104826071' => 'tha', 'Thecc.01G265200' => 'tca', 'Thecc.01G265300' => 'tca', 'Thecc.01G265700' => 'tca', 'Thecc.03G109100' => 'tca', 'Thecc.04G245900' => 'tca', 'Thecc.04G246000' => 'tca', 'Thhalv10003334m.g' => 'esa', 'Thhalv10005508m.g' => 'esa', 'Thhalv10005643m.g' => 'esa', 'Thhalv10007316m.g' => 'esa', 'Thhalv10009006m.g' => 'esa', 'Thhalv10009309m.g' => 'esa', 'Thhalv10014917m.g' => 'esa', 'Thhalv10014919m.g' => 'esa', 'Thhalv10015393m.g' => 'esa', 'Thhalv10016515m.g' => 'esa', 'Thhalv10029242m.g' => 'esa', 'TPR.G16654' => 'tpr', 'TPR.G20589' => 'tpr', 'TPR.G23029' => 'tpr', 'TPR.G27731' => 'tpr', 'TPR.G28889' => 'tpr', 'TPR.G28899' => 'tpr', 'TPR.G30846' => 'tpr', 'TPR.G5452' => 'tpr', 'TPR.G5713' => 'tpr', 'TPR.G9046' => 'tpr', 'TPR.G9061' => 'tpr', 'TWI09G1075' => 'twi', 'TWI12G0806' => 'twi', 'TWI18G0108' => 'twi', 'TWI53G1361' => 'twi', 'TWI73G0185' => 'twi', 'TWI73G0427' => 'twi', 'unitig_37.g12001' => 'ugi', 'unitig_747.g21660' => 'ugi', 'unitig_748.g7232' => 'ugi', 'unitig_748.g7315' => 'ugi', 'unitig_85.g27262' => 'ugi', 'unitig_92.g28220' => 'ugi', 'vmacro02632' => 'vma', 'vmacro08410' => 'vma', 'vmacro08411' => 'vma', 'vmacro15407' => 'vma', 'VMungo0251G3619' => 'vmu', 'VMungo0720G1204' => 'vmu', 'VMungo0720G1918' => 'vmu', 'VMungo0720G2387' => 'vmu', 'VMungo0720G2961' => 'vmu', 'VMungo1215G2154' => 'vmu', 'VMungo1383G2411' => 'vmu', 'Zm00001eb051130' => 'zma', 'Zm00001eb116830' => 'zma', 'Zm00001eb116850' => 'zma', 'Zm00001eb151740' => 'zma', 'Zm00001eb292360' => 'zma', 'Zm00001eb301640' => 'zma' ) $gf_id = 'HOM05D000856' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000856' ) $data_identifier = 'HOM05D000856' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 13, 'ath' => (int) 10, 'atr' => (int) 1, 'acertr' => (int) 8, 'cqu' => (int) 6, 'bca' => (int) 21, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 11, 'car' => (int) 9, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 8, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 5, 'fan' => (int) 16, 'fve' => (int) 6, 'gma' => (int) 11, 'ghi' => (int) 19, 'gra' => (int) 9, 'vvi' => (int) 7, 'han' => (int) 17, 'cav' => (int) 5, 'hma' => (int) 2, 'vpl' => (int) 2, 'sun' => (int) 7, 'lal' => (int) 9, 'lja' => (int) 5, 'lonja' => (int) 9, 'lsa' => (int) 5, 'mes' => (int) 8, 'mpo' => (int) 3, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 10, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 15, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 9, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 9, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 6, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 5, 'spa' => (int) 10, 'tar' => (int) 10, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 11, 'tpr' => (int) 11, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 4, 'vmu' => (int) 7, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb301640' $species_info = array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ) $local_species = 'nta' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000856', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p00010' => 'bna', 'A03p04160' => 'bna', 'A03p17160' => 'bna', 'A04p23370' => 'bna', 'A05p14860' => 'bna', 'A08p37020' => 'bna', 'A09p08050' => 'bna', 'A09p66800' => 'bna', 'A09p67940' => 'bna', 'A10p02680' => 'bna', 'A10p05320' => 'bna', 'Aa31LG1G20560' => 'aar', 'Aa31LG1G20610' => 'aar', 'Aa31LG1G7810' => 'aar', 'Aa31LG5G3590' => 'aar', 'Aa31LG5G6140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3819' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4683' => 'aag', 'Actinidia04480' => 'ach', 'Actinidia05466' => 'ach', 'Actinidia08445' => 'ach', 'Actinidia21170' => 'ach', 'Actinidia24812' => 'ach', 'Actinidia24951' => 'ach', 'Actinidia40088' => 'ach', 'Ah.02g111660' => 'amhyb', 'Ah.11g048900' => 'amhyb', 'Ah.11g049910' => 'amhyb', 'AL1G13870' => 'aly', 'AL1G13880' => 'aly', 'AL1G16760' => 'aly', 'AL390U10020' => 'aly', 'AL4G25520' => 'aly', 'AL6G19890' => 'aly', 'AL6G19900' => 'aly', 'AL6G19910' => 'aly', 'AL8G40100' => 'aly', 'Aqoxy2G03562' => 'aox', 'Aqoxy5G00316' => 'aox', 'Aqoxy5G00926' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1628KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1H403S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2FU6SJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.882I6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8YRY2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YN1SN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AF70II' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZA8L1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F916KL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHRD8H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KTZ8QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S22EMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8M29T' => 'arhy', 'AT1G04270' => 'ath', 'AT1G04280' => 'ath', 'AT1G06750' => 'ath', 'AT1G33850' => 'ath', 'AT2G30630' => 'ath', 'AT5G09490' => 'ath', 'AT5G09500' => 'ath', 'AT5G09510' => 'ath', 'AT5G43640' => 'ath', 'AT5G63070' => 'ath', 'ATR0605G315' => 'atr', 'Atru.chr11.175' => 'acertr', 'Atru.chr11.653' => 'acertr', 'Atru.chr3.1616' => 'acertr', 'Atru.chr4.2230' => 'acertr', 'Atru.chr4.2232' => 'acertr', 'Atru.chr5.1598' => 'acertr', 'Atru.chr5.1600' => 'acertr', 'Atru.chr5.2188' => 'acertr', 'AUR62008326' => 'cqu', 'AUR62011922' => 'cqu', 'AUR62011924' => 'cqu', 'AUR62021771' => 'cqu', 'AUR62032237' => 'cqu', 'AUR62032240' => 'cqu', 'BcaB01g05572' => 'bca', 'BcaB02g10337' => 'bca', 'BcaB04g19944' => 'bca', 'BcaB05g21548' => 'bca', 'BcaB05g21549' => 'bca', 'BcaB05g23227' => 'bca', 'BcaB06g26256' => 'bca', 'BcaB06g26257' => 'bca', 'BcaB06g28379' => 'bca', 'BcaC02g11159' => 'bca', 'BcaC03g13258' => 'bca', 'BcaC03g13259' => 'bca', 'BcaC05g24456' => 'bca', 'BcaC05g24457' => 'bca', 'BcaC07g36922' => 'bca', 'BcaC07g36923' => 'bca', 'BcaC07g42050' => 'bca', 'BcaC07g42176' => 'bca', 'BcaC07g42195' => 'bca', 'BcaC07g42196' => 'bca', 'BcaNung06674' => 'bca', 'BolC2t06351H' => 'bol', 'BolC2t06352H' => 'bol', 'BolC3t12993H' => 'bol', 'BolC4t23525H' => 'bol', 'BolC4t27475H' => 'bol', 'BolC5t29025H' => 'bol', 'BolC5t29026H' => 'bol', 'BolC8t46898H' => 'bol', 'BolC8t46899H' => 'bol', 'BolC8t52630H' => 'bol', 'BolC8t52765H' => 'bol', 'BolC9t53824H' => 'bol', 'BraA03t09760Z' => 'bra', 'BraA03t10990Z' => 'bra', 'BraA05t20413Z' => 'bra', 'BraA08t35602Z' => 'bra', 'BraA09t36458Z' => 'bra', 'BraA09t42018Z' => 'bra', 'BraA09t42129Z' => 'bra', 'BraA10t42536Z' => 'bra', 'BraA10t42537Z' => 'bra', 'C01p10690' => 'bna', 'C02p03890' => 'bna', 'C02p03900' => 'bna', 'C03p04620' => 'bna', 'C04p19870' => 'bna', 'C04p59670' => 'bna', 'C05p02460' => 'bna', 'C05p02470' => 'bna', 'C08p00980' => 'bna', 'C08p00990' => 'bna', 'C08p51030' => 'bna', 'C08p52360' => 'bna', 'C09p09120' => 'bna', 'CAN.G19.15' => 'can', 'CAN.G251.10' => 'can', 'CAN.G251.9' => 'can', 'CAN.G398.24' => 'can', 'CAN.G410.32' => 'can', 'CAN.G881.2' => 'can', 'CANSAT01G3025' => 'cansat', 'CANSAT78G1211' => 'cansat', 'CANSAT78G1218' => 'cansat', 'CANSAT78G1521' => 'cansat', 'CANSAT78G1670' => 'cansat', 'CARHR003600' => 'chi', 'CARHR003610' => 'chi', 'CARHR006290' => 'chi', 'CARHR006430' => 'chi', 'CARHR124110' => 'chi', 'CARHR203870' => 'chi', 'CARHR203880' => 'chi', 'CARHR203890' => 'chi', 'CARHR276880' => 'chi', 'Carub.0001s0346' => 'cru', 'Carub.0001s0347' => 'cru', 'Carub.0001s0607' => 'cru', 'Carub.0003s2768' => 'cru', 'Carub.0003s2769' => 'cru', 'Carub.0004s1178' => 'cru', 'Carub.0006s0806' => 'cru', 'Carub.0006s0807' => 'cru', 'Carub.0006s0808' => 'cru', 'Carub.0008s0501' => 'cru', 'Carub.0008s2379' => 'cru', 'Ca_08655_v3' => 'car', 'Ca_08922_v3' => 'car', 'Ca_08923_v3' => 'car', 'Ca_09119_v3' => 'car', 'Ca_09703_v3' => 'car', 'Ca_09705_v3' => 'car', 'Ca_09835_v3' => 'car', 'Ca_26403_v3' => 'car', 'Ca_30719_v3' => 'car', 'CBR_g17958' => 'cbr', 'CBR_g40516' => 'cbr', 'Cc00_g05350' => 'ccan', 'Cc01_g18690' => 'ccan', 'Cc03_g04830' => 'ccan', 'Cc03_g04850' => 'ccan', 'CDE02G4469' => 'cde', 'CDE06G0883' => 'cde', 'CDE06G1295' => 'cde', 'CDE06G1390' => 'cde', 'CDE07G0584' => 'cde', 'CDE07G1084' => 'cde', 'CDE08G1259' => 'cde', 'Cfa002341' => 'cfa', 'Cfa024337' => 'cfa', 'Ciclev10004749m.g' => 'ccl', 'Ciclev10006127m.g' => 'ccl', 'Ciclev10019720m.g' => 'ccl', 'Ciclev10022652m.g' => 'ccl', 'CiPaw.01G190400' => 'cil', 'CiPaw.01G190500' => 'cil', 'CiPaw.02G116400' => 'cil', 'CiPaw.02G116500' => 'cil', 'CiPaw.04G183000' => 'cil', 'CiPaw.04G183300' => 'cil', 'ClCG05G004610' => 'cla', 'ClCG05G004620' => 'cla', 'ClCG06G006730' => 'cla', 'ClCG06G006740' => 'cla', 'ClCG11G003690' => 'cla', 'COL.COLO4_08276' => 'col', 'COL.COLO4_08277' => 'col', 'COL.COLO4_15787' => 'col', 'COL.COLO4_15789' => 'col', 'Cpa.g.c44815' => 'cpa', 'Cpa.g.sc52.144' => 'cpa', 'Cpa.g.sc58.46' => 'cpa', 'Cpa.g.sc58.47' => 'cpa', 'Cre08.g360900' => 'cre', 'CsaV3_2G013030' => 'csa', 'CsaV3_2G013050' => 'csa', 'CsaV3_2G015620' => 'csa', 'CsaV3_3G012590' => 'csa', 'CsaV3_3G012600' => 'csa', 'CSS0001641' => 'camsi', 'CSS0008310' => 'camsi', 'CSS0013011' => 'camsi', 'CSS0017147' => 'camsi', 'CSS0022970' => 'camsi', 'CSS0025655' => 'camsi', 'CSS0028665' => 'camsi', 'CSS0029117' => 'camsi', 'CSS0032024' => 'camsi', 'CSS0039681' => 'camsi', 'CSS0046516' => 'camsi', 'CSS0050307' => 'camsi', 'DCAR_005871' => 'dca', 'DCAR_007342' => 'dca', 'DCAR_024228' => 'dca', 'DCAR_027277' => 'dca', 'DCAR_030718' => 'dca', 'Dinv20287' => 'din', 'Dinv22461' => 'din', 'Dinv22464' => 'din', 'Dinv29912' => 'din', 'Dinv29913' => 'din', 'Dinv34580' => 'din', 'Dinv34582' => 'din', 'Dinv44632' => 'din', 'Duzib052G0266' => 'dzi', 'Duzib133G0907' => 'dzi', 'Duzib133G1034' => 'dzi', 'Duzib138G0207' => 'dzi', 'Duzib138G0491' => 'dzi', 'Duzib151G0812' => 'dzi', 'Duzib151G1166' => 'dzi', 'Duzib168G0192' => 'dzi', 'Duzib211G0077' => 'dzi', 'Duzib212G0429' => 'dzi', 'Duzib212G0472' => 'dzi', 'ECA233G2617' => 'eca', 'ECA236G4188' => 'eca', 'ECA240G0936' => 'eca', 'ECA240G1129' => 'eca', 'ECA247G0623' => 'eca', 'EL10Ac5g10451' => 'bvu', 'EL10Ac5g10453' => 'bvu', 'EL10Ac5g10894' => 'bvu', 'Eucgr.H00192' => 'egr', 'Eucgr.H00193' => 'egr', 'Eucgr.H00194' => 'egr', 'Eucgr.J01562' => 'egr', 'Eucgr.K03301' => 'egr', 'FAN02G0632' => 'fan', 'FAN05G5378' => 'fan', 'FAN09G3247' => 'fan', 'FAN12G0435' => 'fan', 'FAN12G2426' => 'fan', 'FAN14G1707' => 'fan', 'FAN14G4725' => 'fan', 'FAN15G2071' => 'fan', 'FAN17G3065' => 'fan', 'FAN19G1376' => 'fan', 'FAN20G0354' => 'fan', 'FAN20G2429' => 'fan', 'FAN20G2658' => 'fan', 'FAN24G2343' => 'fan', 'FAN27G2362' => 'fan', 'FAN28G1765' => 'fan', 'FvH4_1g16020' => 'fve', 'FvH4_2g04890' => 'fve', 'FvH4_2g22270' => 'fve', 'FvH4_4g02630' => 'fve', 'FvH4_4g02640' => 'fve', 'FvH4_6g02650' => 'fve', 'Glyma.02G140600' => 'gma', 'Glyma.03G159900' => 'gma', 'Glyma.05G234800' => 'gma', 'Glyma.07G269600' => 'gma', 'Glyma.08G042300' => 'gma', 'Glyma.10G033500' => 'gma', 'Glyma.10G185200' => 'gma', 'Glyma.17G004300' => 'gma', 'Glyma.19G161900' => 'gma', 'Glyma.20G205100' => 'gma', 'Glyma.20G205200' => 'gma', 'Gohir.A01G139101' => 'ghi', 'Gohir.A02G035600' => 'ghi', 'Gohir.A02G117901' => 'ghi', 'Gohir.A07G210100' => 'ghi', 'Gohir.A07G210200' => 'ghi', 'Gohir.A08G061100' => 'ghi', 'Gohir.A09G223000' => 'ghi', 'Gohir.A09G223100' => 'ghi', 'Gohir.A10G113900' => 'ghi', 'Gohir.A10G114000' => 'ghi', 'Gohir.D02G042300' => 'ghi', 'Gohir.D07G216100' => 'ghi', 'Gohir.D07G216200' => 'ghi', 'Gohir.D08G070400' => 'ghi', 'Gohir.D09G225000' => 'ghi', 'Gohir.D09G225100' => 'ghi', 'Gohir.D10G152300' => 'ghi', 'Gohir.D10G153200' => 'ghi', 'Gohir.D11G133701' => 'ghi', 'Gorai.004G074100' => 'gra', 'Gorai.005G046800' => 'gra', 'Gorai.006G246500' => 'gra', 'Gorai.006G246600' => 'gra', 'Gorai.007G142900' => 'gra', 'Gorai.011G171000' => 'gra', 'Gorai.011G171100' => 'gra', 'Gorai.013G104300' => 'gra', 'Gorai.013G104400' => 'gra', 'GSVIVG01000754001' => 'vvi', 'GSVIVG01000756001' => 'vvi', 'GSVIVG01010903001' => 'vvi', 'GSVIVG01017623001' => 'vvi', 'GSVIVG01018113001' => 'vvi', 'GSVIVG01018116001' => 'vvi', 'GSVIVG01018118001' => 'vvi', 'HanXRQChr03g0076211' => 'han', 'HanXRQChr03g0092431' => 'han', 'HanXRQChr03g0092441' => 'han', 'HanXRQChr03g0092591' => 'han', 'HanXRQChr03g0092671' => 'han', 'HanXRQChr03g0092681' => 'han', 'HanXRQChr03g0092691' => 'han', 'HanXRQChr03g0092701' => 'han', 'HanXRQChr03g0092721' => 'han', 'HanXRQChr03g0092731' => 'han', 'HanXRQChr04g0113681' => 'han', 'HanXRQChr10g0281371' => 'han', 'HanXRQChr11g0337141' => 'han', 'HanXRQChr13g0424521' => 'han', 'HanXRQChr13g0424531' => 'han', 'HanXRQChr13g0424541' => 'han', 'HanXRQChr16g0498221' => 'han', 'Haze_04377' => 'cav', 'Haze_11298' => 'cav', 'Haze_24547' => 'cav', 'Haze_24550' => 'cav', 'Haze_26587' => 'cav', 'Hma1.2p1_0650F.1_g195410' => 'hma', 'Hma1.2p1_0893F.1_g233470' => 'hma', 'HPP92_006508' => 'vpl', 'HPP92_024780' => 'vpl', 'Hund02688' => 'sun', 'Hund09380' => 'sun', 'Hund09381' => 'sun', 'Hund09832' => 'sun', 'Hund09833' => 'sun', 'Hund11351' => 'sun', 'Hund11513' => 'sun', 'Lalb_Chr06g0162591' => 'lal', 'Lalb_Chr06g0162601' => 'lal', 'Lalb_Chr06g0169321' => 'lal', 'Lalb_Chr09g0330951' => 'lal', 'Lalb_Chr16g0387631' => 'lal', 'Lalb_Chr21g0306241' => 'lal', 'Lalb_Chr25g0290051' => 'lal', 'Lalb_Chr25g0290061' => 'lal', 'Lalb_Chr25g0290071' => 'lal', 'Lj1g0003876' => 'lja', 'Lj1P1207T36' => 'lonja', 'Lj2C1156G12' => 'lonja', 'Lj3A793G39' => 'lonja', 'Lj3C580G2' => 'lonja', 'Lj3C780G2' => 'lonja', 'Lj3C780T4' => 'lonja', 'Lj3C793G9' => 'lonja', 'Lj4g0012960' => 'lja', 'Lj5g0021252' => 'lja', 'Lj5g0021484' => 'lja', 'Lj5g0024528' => 'lja', 'Lj6A399T12' => 'lonja', 'Lj6A656G65' => 'lonja', 'Lsat_1_v5_gn_3_125500' => 'lsa', 'Lsat_1_v5_gn_3_125540' => 'lsa', 'Lsat_1_v5_gn_5_72701' => 'lsa', 'Lsat_1_v5_gn_8_91560' => 'lsa', 'Lsat_1_v5_gn_9_9640' => 'lsa', 'Manes.01G200600' => 'mes', 'Manes.01G200700' => 'mes', 'Manes.03G168900' => 'mes', 'Manes.03G169000' => 'mes', 'Manes.05G085801' => 'mes', 'Manes.05G086200' => 'mes', 'Manes.15G036700' => 'mes', 'Manes.15G036900' => 'mes', 'Mapoly0004s0172' => 'mpo', 'Mapoly0023s0001' => 'mpo', 'Mapoly0142s0012' => 'mpo', 'MBI01_g32854_MAGBIO' => 'mbi', 'MBI11_g24427_MAGBIO' => 'mbi', 'MBI11_g47319_MAGBIO' => 'mbi', 'MCO01G433' => 'mco', 'MD00G1187800' => 'mdo', 'MD04G1226500' => 'mdo', 'MD05G1203900' => 'mdo', 'MD10G1191100' => 'mdo', 'MD12G1243500' => 'mdo', 'MD13G1207000' => 'mdo', 'MD13G1207100' => 'mdo', 'MD16G1208600' => 'mdo', 'Medtr1g050352' => 'mtr', 'Medtr1g070385' => 'mtr', 'Medtr1g070450' => 'mtr', 'Medtr1g075200' => 'mtr', 'Medtr1g075250' => 'mtr', 'Medtr1g075260' => 'mtr', 'Medtr1g475250' => 'mtr', 'Medtr4g075450' => 'mtr', 'Medtr7g096300' => 'mtr', 'Medtr8g105110' => 'mtr', 'MELO3C006470.2' => 'cme', 'MELO3C006471.2' => 'cme', 'MELO3C020772.2' => 'cme', 'MELO3C026780.2' => 'cme', 'MELO3C026781.2' => 'cme', 'Migut.D00390' => 'egut', 'Migut.G00435' => 'egut', 'Migut.G00436' => 'egut', 'Migut.G00718' => 'egut', 'MSTRG.21891' => 'ama', 'MSTRG.26910' => 'ama', 'MSTRG.4099' => 'ama', 'MSTRG.9925' => 'ama', 'Nitab4.5_0000165g0010' => 'nta', 'Nitab4.5_0000209g0180' => 'nta', 'Nitab4.5_0000244g0440' => 'nta', 'Nitab4.5_0000525g0220' => 'nta', 'Nitab4.5_0001597g0020' => 'nta', 'Nitab4.5_0001878g0040' => 'nta', 'Nitab4.5_0001878g0060' => 'nta', 'Nitab4.5_0002838g0100' => 'nta', 'Nitab4.5_0002838g0120' => 'nta', 'Nitab4.5_0004798g0030' => 'nta', 'Nitab4.5_0005420g0010' => 'nta', 'Nitab4.5_0005507g0010' => 'nta', 'Nitab4.5_0005574g0020' => 'nta', 'Nitab4.5_0005838g0010' => 'nta', 'Nitab4.5_0010580g0020' => 'nta', 'Nn1g02599' => 'nnu', 'Nn1g02608' => 'nnu', 'Nn3g17742' => 'nnu', 'Nn3g19534' => 'nnu', 'Nn3g19535' => 'nnu', 'Oeu008790.1' => 'oeu', 'Oeu008792.1' => 'oeu', 'Oeu032590.1' => 'oeu', 'Oeu035349.1' => 'oeu', 'Oeu049791.1' => 'oeu', 'Os01g0774500' => 'osa', 'Os03g0628800' => 'osa', 'Os03g0798600' => 'osa', 'Os05g0508800' => 'osa', 'Peaxi162Scf00036g02018' => 'pax', 'Peaxi162Scf00578g00032' => 'pax', 'Peaxi162Scf00578g00317' => 'pax', 'Peaxi162Scf00785g00114' => 'pax', 'Peaxi162Scf00813g00119' => 'pax', 'Peaxi162Scf00906g00227' => 'pax', 'PGR004G0875' => 'pgr', 'PGR004G2424' => 'pgr', 'PGR031G1239' => 'pgr', 'PGR031G2474' => 'pgr', 'PGR044G0423' => 'pgr', 'PGSC0003DMG400001128' => 'stu', 'PGSC0003DMG400007336' => 'stu', 'PGSC0003DMG400016318' => 'stu', 'PGSC0003DMG400016319' => 'stu', 'PGSC0003DMG400018074' => 'stu', 'Phvul.001G157700' => 'pvu', 'Phvul.002G148550' => 'pvu', 'Phvul.002G320200' => 'pvu', 'Phvul.003G089200' => 'pvu', 'Phvul.007G126000' => 'pvu', 'Phvul.007G126100' => 'pvu', 'Phvul.007G178000' => 'pvu', 'Phvul.007G178200' => 'pvu', 'Potri.002G043000' => 'ptr', 'Potri.002G043200' => 'ptr', 'Potri.003G123750' => 'ptr', 'Potri.005G055401' => 'ptr', 'Potri.005G219700' => 'ptr', 'Potri.005G220000' => 'ptr', 'Potri.008G161901' => 'ptr', 'Potri.008G162000' => 'ptr', 'Potri.008G162400' => 'ptr', 'Potri.010G076900' => 'ptr', 'Pp3c12_9180' => 'ppa', 'Pp3c13_19770' => 'ppa', 'Pp3c14_22950' => 'ppa', 'Pp3c16_12160' => 'ppa', 'Pp3c27_7820' => 'ppa', 'Pp3c2_3490' => 'ppa', 'Pp3c3_23700' => 'ppa', 'Pp3c3_36520' => 'ppa', 'Pp3c4_15250' => 'ppa', 'PRCOL_00007002' => 'pco', 'Prupe.1G030600' => 'ppe', 'Prupe.1G030700' => 'ppe', 'Prupe.6G345200' => 'ppe', 'Prupe.8G230300' => 'ppe', 'Prupe.8G230500' => 'ppe', 'Psat3g059600' => 'psa', 'Psat5g200920' => 'psa', 'Psat6g056440' => 'psa', 'Psat6g057360' => 'psa', 'Psat6g134120' => 'psa', 'Psat6g134160' => 'psa', 'Psat7g008640' => 'psa', 'Psat7g185240' => 'psa', 'PSO017G1330' => 'pso', 'PSO063G6097' => 'pso', 'PSO170G0835' => 'pso', 'PSO170G2499' => 'pso', 'PSO210G5058' => 'pso', 'PSO210G6154' => 'pso', 'PSO585G0031' => 'pso', 'PSO832G0264' => 'pso', 'PSO832G4288' => 'pso', 'QL03p027355' => 'qlo', 'QL03p027430' => 'qlo', 'QL04p081380' => 'qlo', 'QL06p015642' => 'qlo', 'QL06p015650' => 'qlo', 'QL06p015686' => 'qlo', 'QL12p042927' => 'qlo', 'QL93p1863_0035' => 'qlo', 'RcHm_v2.0_Chr3g0450581' => 'rch', 'RcHm_v2.0_Chr4g0390371' => 'rch', 'RcHm_v2.0_Chr4g0390381' => 'rch', 'RcHm_v2.0_Chr4g0390491' => 'rch', 'RcHm_v2.0_Chr4g0390501' => 'rch', 'RcHm_v2.0_Chr6g0289231' => 'rch', 'Rhsim04G0190400' => 'rsi', 'Rhsim04G0190500' => 'rsi', 'Rhsim04G0190600' => 'rsi', 'Rhsim13G0031400' => 'rsi', 'Rhsim13G0165600' => 'rsi', 'RhsimUnG0114600' => 'rsi', 'RhsimUnG0114700' => 'rsi', 'Sabra02G0034800' => 'sbr', 'Sabra02G0035100' => 'sbr', 'Sabra05G0168600' => 'sbr', 'Sabra05G0168800' => 'sbr', 'Sabra08G0123700' => 'sbr', 'Sabra10G0031900' => 'sbr', 'Sabra13G0039000' => 'sbr', 'SalBow2G0782' => 'sbo', 'SalBow2G1403' => 'sbo', 'SalBow4G0074' => 'sbo', 'SalBow4G2635' => 'sbo', 'SalBow5G3010' => 'sbo', 'Sc05g0000870' => 'sci', 'Sc05g0000890' => 'sci', 'Sc13g0005000' => 'sci', 'Sc13g0005030' => 'sci', 'Sc19g0003790' => 'sci', 'Sc19g0003800' => 'sci', 'Sed0003467' => 'sed', 'Sed0009355' => 'sed', 'Sed0009894' => 'sed', 'Sed0011972' => 'sed', 'Sed0021483' => 'sed', 'Sed0021750' => 'sed', 'Sed0026279' => 'sed', 'SEGI_05312' => 'sgi', 'SEGI_10112' => 'sgi', 'SEGI_15835' => 'sgi', 'SEGI_30386' => 'sgi', 'SEGI_34122' => 'sgi', 'SEGI_35063' => 'sgi', 'SGA_v2.0_scaffold101G29794' => 'sas', 'SGA_v2.0_scaffold1G00573' => 'sas', 'SGA_v2.0_scaffold79G25637' => 'sas', 'SGA_v2.0_scaffold88G27283' => 'sas', 'SGA_v2.0_scaffold88G27285' => 'sas', 'SGA_v2.0_scaffold88G27331' => 'sas', 'SHI09937' => 'shi', 'SMO119G0302' => 'smo', 'SMO137G0231' => 'smo', 'SMO367G1151' => 'smo', 'Solyc02g082000.3' => 'sly', 'Solyc06g031670.3' => 'sly', 'Solyc06g053810.3' => 'sly', 'Solyc07g025457.1' => 'sly', 'Solyc08g059740.1' => 'sly', 'Solyc08g059750.3' => 'sly', 'Solyc09g083370.3' => 'sly', 'Solyc12g038950.3' => 'sly', 'Sopen02g026630' => 'spe', 'Sopen06g018930' => 'spe', 'Sopen06g018940' => 'spe', 'Sopen08g009460' => 'spe', 'Sopen09g032290' => 'spe', 'Sp1g03080' => 'spa', 'Sp1g03090' => 'spa', 'Sp1g05480' => 'spa', 'Sp2g07860' => 'spa', 'Sp2g08430' => 'spa', 'Sp2g08440' => 'spa', 'Sp2g26200' => 'spa', 'Sp4g13170' => 'spa', 'Sp6g33840' => 'spa', 'SpUn1204_0010' => 'spa', 'TAR365G0908' => 'tar', 'TAR381G1270' => 'tar', 'TAR381G1651' => 'tar', 'TAR625G1131' => 'tar', 'TAR633G0962' => 'tar', 'TAR633G1729' => 'tar', 'TAR633G1864' => 'tar', 'TAR636G0221' => 'tar', 'TAR636G0314' => 'tar', 'TAR636G3202' => 'tar', 'THA.LOC104800805' => 'tha', 'THA.LOC104801096' => 'tha', 'THA.LOC104801555' => 'tha', 'THA.LOC104808491' => 'tha', 'THA.LOC104808595' => 'tha', 'THA.LOC104815985' => 'tha', 'THA.LOC104822250' => 'tha', 'THA.LOC104826071' => 'tha', 'Thecc.01G265200' => 'tca', 'Thecc.01G265300' => 'tca', 'Thecc.01G265700' => 'tca', 'Thecc.03G109100' => 'tca', 'Thecc.04G245900' => 'tca', 'Thecc.04G246000' => 'tca', 'Thhalv10003334m.g' => 'esa', 'Thhalv10005508m.g' => 'esa', 'Thhalv10005643m.g' => 'esa', 'Thhalv10007316m.g' => 'esa', 'Thhalv10009006m.g' => 'esa', 'Thhalv10009309m.g' => 'esa', 'Thhalv10014917m.g' => 'esa', 'Thhalv10014919m.g' => 'esa', 'Thhalv10015393m.g' => 'esa', 'Thhalv10016515m.g' => 'esa', 'Thhalv10029242m.g' => 'esa', 'TPR.G16654' => 'tpr', 'TPR.G20589' => 'tpr', 'TPR.G23029' => 'tpr', 'TPR.G27731' => 'tpr', 'TPR.G28889' => 'tpr', 'TPR.G28899' => 'tpr', 'TPR.G30846' => 'tpr', 'TPR.G5452' => 'tpr', 'TPR.G5713' => 'tpr', 'TPR.G9046' => 'tpr', 'TPR.G9061' => 'tpr', 'TWI09G1075' => 'twi', 'TWI12G0806' => 'twi', 'TWI18G0108' => 'twi', 'TWI53G1361' => 'twi', 'TWI73G0185' => 'twi', 'TWI73G0427' => 'twi', 'unitig_37.g12001' => 'ugi', 'unitig_747.g21660' => 'ugi', 'unitig_748.g7232' => 'ugi', 'unitig_748.g7315' => 'ugi', 'unitig_85.g27262' => 'ugi', 'unitig_92.g28220' => 'ugi', 'vmacro02632' => 'vma', 'vmacro08410' => 'vma', 'vmacro08411' => 'vma', 'vmacro15407' => 'vma', 'VMungo0251G3619' => 'vmu', 'VMungo0720G1204' => 'vmu', 'VMungo0720G1918' => 'vmu', 'VMungo0720G2387' => 'vmu', 'VMungo0720G2961' => 'vmu', 'VMungo1215G2154' => 'vmu', 'VMungo1383G2411' => 'vmu', 'Zm00001eb051130' => 'zma', 'Zm00001eb116830' => 'zma', 'Zm00001eb116850' => 'zma', 'Zm00001eb151740' => 'zma', 'Zm00001eb292360' => 'zma', 'Zm00001eb301640' => 'zma' ), 'gf_id' => 'HOM05D000856', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000856' ), 'data_identifier' => 'HOM05D000856', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000856', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p00010' => 'bna', 'A03p04160' => 'bna', 'A03p17160' => 'bna', 'A04p23370' => 'bna', 'A05p14860' => 'bna', 'A08p37020' => 'bna', 'A09p08050' => 'bna', 'A09p66800' => 'bna', 'A09p67940' => 'bna', 'A10p02680' => 'bna', 'A10p05320' => 'bna', 'Aa31LG1G20560' => 'aar', 'Aa31LG1G20610' => 'aar', 'Aa31LG1G7810' => 'aar', 'Aa31LG5G3590' => 'aar', 'Aa31LG5G6140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3819' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4683' => 'aag', 'Actinidia04480' => 'ach', 'Actinidia05466' => 'ach', 'Actinidia08445' => 'ach', 'Actinidia21170' => 'ach', 'Actinidia24812' => 'ach', 'Actinidia24951' => 'ach', 'Actinidia40088' => 'ach', 'Ah.02g111660' => 'amhyb', 'Ah.11g048900' => 'amhyb', 'Ah.11g049910' => 'amhyb', 'AL1G13870' => 'aly', 'AL1G13880' => 'aly', 'AL1G16760' => 'aly', 'AL390U10020' => 'aly', 'AL4G25520' => 'aly', 'AL6G19890' => 'aly', 'AL6G19900' => 'aly', 'AL6G19910' => 'aly', 'AL8G40100' => 'aly', 'Aqoxy2G03562' => 'aox', 'Aqoxy5G00316' => 'aox', 'Aqoxy5G00926' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1628KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1H403S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2FU6SJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.882I6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8YRY2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YN1SN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AF70II' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZA8L1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F916KL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHRD8H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KTZ8QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S22EMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8M29T' => 'arhy', 'AT1G04270' => 'ath', 'AT1G04280' => 'ath', 'AT1G06750' => 'ath', 'AT1G33850' => 'ath', 'AT2G30630' => 'ath', 'AT5G09490' => 'ath', 'AT5G09500' => 'ath', 'AT5G09510' => 'ath', 'AT5G43640' => 'ath', 'AT5G63070' => 'ath', 'ATR0605G315' => 'atr', 'Atru.chr11.175' => 'acertr', 'Atru.chr11.653' => 'acertr', 'Atru.chr3.1616' => 'acertr', 'Atru.chr4.2230' => 'acertr', 'Atru.chr4.2232' => 'acertr', 'Atru.chr5.1598' => 'acertr', 'Atru.chr5.1600' => 'acertr', 'Atru.chr5.2188' => 'acertr', 'AUR62008326' => 'cqu', 'AUR62011922' => 'cqu', 'AUR62011924' => 'cqu', 'AUR62021771' => 'cqu', 'AUR62032237' => 'cqu', 'AUR62032240' => 'cqu', 'BcaB01g05572' => 'bca', 'BcaB02g10337' => 'bca', 'BcaB04g19944' => 'bca', 'BcaB05g21548' => 'bca', 'BcaB05g21549' => 'bca', 'BcaB05g23227' => 'bca', 'BcaB06g26256' => 'bca', 'BcaB06g26257' => 'bca', 'BcaB06g28379' => 'bca', 'BcaC02g11159' => 'bca', 'BcaC03g13258' => 'bca', 'BcaC03g13259' => 'bca', 'BcaC05g24456' => 'bca', 'BcaC05g24457' => 'bca', 'BcaC07g36922' => 'bca', 'BcaC07g36923' => 'bca', 'BcaC07g42050' => 'bca', 'BcaC07g42176' => 'bca', 'BcaC07g42195' => 'bca', 'BcaC07g42196' => 'bca', 'BcaNung06674' => 'bca', 'BolC2t06351H' => 'bol', 'BolC2t06352H' => 'bol', 'BolC3t12993H' => 'bol', 'BolC4t23525H' => 'bol', 'BolC4t27475H' => 'bol', 'BolC5t29025H' => 'bol', 'BolC5t29026H' => 'bol', 'BolC8t46898H' => 'bol', 'BolC8t46899H' => 'bol', 'BolC8t52630H' => 'bol', 'BolC8t52765H' => 'bol', 'BolC9t53824H' => 'bol', 'BraA03t09760Z' => 'bra', 'BraA03t10990Z' => 'bra', 'BraA05t20413Z' => 'bra', 'BraA08t35602Z' => 'bra', 'BraA09t36458Z' => 'bra', 'BraA09t42018Z' => 'bra', 'BraA09t42129Z' => 'bra', 'BraA10t42536Z' => 'bra', 'BraA10t42537Z' => 'bra', 'C01p10690' => 'bna', 'C02p03890' => 'bna', 'C02p03900' => 'bna', 'C03p04620' => 'bna', 'C04p19870' => 'bna', 'C04p59670' => 'bna', 'C05p02460' => 'bna', 'C05p02470' => 'bna', 'C08p00980' => 'bna', 'C08p00990' => 'bna', 'C08p51030' => 'bna', 'C08p52360' => 'bna', 'C09p09120' => 'bna', 'CAN.G19.15' => 'can', 'CAN.G251.10' => 'can', 'CAN.G251.9' => 'can', 'CAN.G398.24' => 'can', 'CAN.G410.32' => 'can', 'CAN.G881.2' => 'can', 'CANSAT01G3025' => 'cansat', 'CANSAT78G1211' => 'cansat', 'CANSAT78G1218' => 'cansat', 'CANSAT78G1521' => 'cansat', 'CANSAT78G1670' => 'cansat', 'CARHR003600' => 'chi', 'CARHR003610' => 'chi', 'CARHR006290' => 'chi', 'CARHR006430' => 'chi', 'CARHR124110' => 'chi', 'CARHR203870' => 'chi', 'CARHR203880' => 'chi', 'CARHR203890' => 'chi', 'CARHR276880' => 'chi', 'Carub.0001s0346' => 'cru', 'Carub.0001s0347' => 'cru', 'Carub.0001s0607' => 'cru', 'Carub.0003s2768' => 'cru', 'Carub.0003s2769' => 'cru', 'Carub.0004s1178' => 'cru', 'Carub.0006s0806' => 'cru', 'Carub.0006s0807' => 'cru', 'Carub.0006s0808' => 'cru', 'Carub.0008s0501' => 'cru', 'Carub.0008s2379' => 'cru', 'Ca_08655_v3' => 'car', 'Ca_08922_v3' => 'car', 'Ca_08923_v3' => 'car', 'Ca_09119_v3' => 'car', 'Ca_09703_v3' => 'car', 'Ca_09705_v3' => 'car', 'Ca_09835_v3' => 'car', 'Ca_26403_v3' => 'car', 'Ca_30719_v3' => 'car', 'CBR_g17958' => 'cbr', 'CBR_g40516' => 'cbr', 'Cc00_g05350' => 'ccan', 'Cc01_g18690' => 'ccan', 'Cc03_g04830' => 'ccan', 'Cc03_g04850' => 'ccan', 'CDE02G4469' => 'cde', 'CDE06G0883' => 'cde', 'CDE06G1295' => 'cde', 'CDE06G1390' => 'cde', 'CDE07G0584' => 'cde', 'CDE07G1084' => 'cde', 'CDE08G1259' => 'cde', 'Cfa002341' => 'cfa', 'Cfa024337' => 'cfa', 'Ciclev10004749m.g' => 'ccl', 'Ciclev10006127m.g' => 'ccl', 'Ciclev10019720m.g' => 'ccl', 'Ciclev10022652m.g' => 'ccl', 'CiPaw.01G190400' => 'cil', 'CiPaw.01G190500' => 'cil', 'CiPaw.02G116400' => 'cil', 'CiPaw.02G116500' => 'cil', 'CiPaw.04G183000' => 'cil', 'CiPaw.04G183300' => 'cil', 'ClCG05G004610' => 'cla', 'ClCG05G004620' => 'cla', 'ClCG06G006730' => 'cla', 'ClCG06G006740' => 'cla', 'ClCG11G003690' => 'cla', 'COL.COLO4_08276' => 'col', 'COL.COLO4_08277' => 'col', 'COL.COLO4_15787' => 'col', 'COL.COLO4_15789' => 'col', 'Cpa.g.c44815' => 'cpa', 'Cpa.g.sc52.144' => 'cpa', 'Cpa.g.sc58.46' => 'cpa', 'Cpa.g.sc58.47' => 'cpa', 'Cre08.g360900' => 'cre', 'CsaV3_2G013030' => 'csa', 'CsaV3_2G013050' => 'csa', 'CsaV3_2G015620' => 'csa', 'CsaV3_3G012590' => 'csa', 'CsaV3_3G012600' => 'csa', 'CSS0001641' => 'camsi', 'CSS0008310' => 'camsi', 'CSS0013011' => 'camsi', 'CSS0017147' => 'camsi', 'CSS0022970' => 'camsi', 'CSS0025655' => 'camsi', 'CSS0028665' => 'camsi', 'CSS0029117' => 'camsi', 'CSS0032024' => 'camsi', 'CSS0039681' => 'camsi', 'CSS0046516' => 'camsi', 'CSS0050307' => 'camsi', 'DCAR_005871' => 'dca', 'DCAR_007342' => 'dca', 'DCAR_024228' => 'dca', 'DCAR_027277' => 'dca', 'DCAR_030718' => 'dca', 'Dinv20287' => 'din', 'Dinv22461' => 'din', 'Dinv22464' => 'din', 'Dinv29912' => 'din', 'Dinv29913' => 'din', 'Dinv34580' => 'din', 'Dinv34582' => 'din', 'Dinv44632' => 'din', 'Duzib052G0266' => 'dzi', 'Duzib133G0907' => 'dzi', 'Duzib133G1034' => 'dzi', 'Duzib138G0207' => 'dzi', 'Duzib138G0491' => 'dzi', 'Duzib151G0812' => 'dzi', 'Duzib151G1166' => 'dzi', 'Duzib168G0192' => 'dzi', 'Duzib211G0077' => 'dzi', 'Duzib212G0429' => 'dzi', 'Duzib212G0472' => 'dzi', 'ECA233G2617' => 'eca', 'ECA236G4188' => 'eca', 'ECA240G0936' => 'eca', 'ECA240G1129' => 'eca', 'ECA247G0623' => 'eca', 'EL10Ac5g10451' => 'bvu', 'EL10Ac5g10453' => 'bvu', 'EL10Ac5g10894' => 'bvu', 'Eucgr.H00192' => 'egr', 'Eucgr.H00193' => 'egr', 'Eucgr.H00194' => 'egr', 'Eucgr.J01562' => 'egr', 'Eucgr.K03301' => 'egr', 'FAN02G0632' => 'fan', 'FAN05G5378' => 'fan', 'FAN09G3247' => 'fan', 'FAN12G0435' => 'fan', 'FAN12G2426' => 'fan', 'FAN14G1707' => 'fan', 'FAN14G4725' => 'fan', 'FAN15G2071' => 'fan', 'FAN17G3065' => 'fan', 'FAN19G1376' => 'fan', 'FAN20G0354' => 'fan', 'FAN20G2429' => 'fan', 'FAN20G2658' => 'fan', 'FAN24G2343' => 'fan', 'FAN27G2362' => 'fan', 'FAN28G1765' => 'fan', 'FvH4_1g16020' => 'fve', 'FvH4_2g04890' => 'fve', 'FvH4_2g22270' => 'fve', 'FvH4_4g02630' => 'fve', 'FvH4_4g02640' => 'fve', 'FvH4_6g02650' => 'fve', 'Glyma.02G140600' => 'gma', 'Glyma.03G159900' => 'gma', 'Glyma.05G234800' => 'gma', 'Glyma.07G269600' => 'gma', 'Glyma.08G042300' => 'gma', 'Glyma.10G033500' => 'gma', 'Glyma.10G185200' => 'gma', 'Glyma.17G004300' => 'gma', 'Glyma.19G161900' => 'gma', 'Glyma.20G205100' => 'gma', 'Glyma.20G205200' => 'gma', 'Gohir.A01G139101' => 'ghi', 'Gohir.A02G035600' => 'ghi', 'Gohir.A02G117901' => 'ghi', 'Gohir.A07G210100' => 'ghi', 'Gohir.A07G210200' => 'ghi', 'Gohir.A08G061100' => 'ghi', 'Gohir.A09G223000' => 'ghi', 'Gohir.A09G223100' => 'ghi', 'Gohir.A10G113900' => 'ghi', 'Gohir.A10G114000' => 'ghi', 'Gohir.D02G042300' => 'ghi', 'Gohir.D07G216100' => 'ghi', 'Gohir.D07G216200' => 'ghi', 'Gohir.D08G070400' => 'ghi', 'Gohir.D09G225000' => 'ghi', 'Gohir.D09G225100' => 'ghi', 'Gohir.D10G152300' => 'ghi', 'Gohir.D10G153200' => 'ghi', 'Gohir.D11G133701' => 'ghi', 'Gorai.004G074100' => 'gra', 'Gorai.005G046800' => 'gra', 'Gorai.006G246500' => 'gra', 'Gorai.006G246600' => 'gra', 'Gorai.007G142900' => 'gra', 'Gorai.011G171000' => 'gra', 'Gorai.011G171100' => 'gra', 'Gorai.013G104300' => 'gra', 'Gorai.013G104400' => 'gra', 'GSVIVG01000754001' => 'vvi', 'GSVIVG01000756001' => 'vvi', 'GSVIVG01010903001' => 'vvi', 'GSVIVG01017623001' => 'vvi', 'GSVIVG01018113001' => 'vvi', 'GSVIVG01018116001' => 'vvi', 'GSVIVG01018118001' => 'vvi', 'HanXRQChr03g0076211' => 'han', 'HanXRQChr03g0092431' => 'han', 'HanXRQChr03g0092441' => 'han', 'HanXRQChr03g0092591' => 'han', 'HanXRQChr03g0092671' => 'han', 'HanXRQChr03g0092681' => 'han', 'HanXRQChr03g0092691' => 'han', 'HanXRQChr03g0092701' => 'han', 'HanXRQChr03g0092721' => 'han', 'HanXRQChr03g0092731' => 'han', 'HanXRQChr04g0113681' => 'han', 'HanXRQChr10g0281371' => 'han', 'HanXRQChr11g0337141' => 'han', 'HanXRQChr13g0424521' => 'han', 'HanXRQChr13g0424531' => 'han', 'HanXRQChr13g0424541' => 'han', 'HanXRQChr16g0498221' => 'han', 'Haze_04377' => 'cav', 'Haze_11298' => 'cav', 'Haze_24547' => 'cav', 'Haze_24550' => 'cav', 'Haze_26587' => 'cav', 'Hma1.2p1_0650F.1_g195410' => 'hma', 'Hma1.2p1_0893F.1_g233470' => 'hma', 'HPP92_006508' => 'vpl', 'HPP92_024780' => 'vpl', 'Hund02688' => 'sun', 'Hund09380' => 'sun', 'Hund09381' => 'sun', 'Hund09832' => 'sun', 'Hund09833' => 'sun', 'Hund11351' => 'sun', 'Hund11513' => 'sun', 'Lalb_Chr06g0162591' => 'lal', 'Lalb_Chr06g0162601' => 'lal', 'Lalb_Chr06g0169321' => 'lal', 'Lalb_Chr09g0330951' => 'lal', 'Lalb_Chr16g0387631' => 'lal', 'Lalb_Chr21g0306241' => 'lal', 'Lalb_Chr25g0290051' => 'lal', 'Lalb_Chr25g0290061' => 'lal', 'Lalb_Chr25g0290071' => 'lal', 'Lj1g0003876' => 'lja', 'Lj1P1207T36' => 'lonja', 'Lj2C1156G12' => 'lonja', 'Lj3A793G39' => 'lonja', 'Lj3C580G2' => 'lonja', 'Lj3C780G2' => 'lonja', 'Lj3C780T4' => 'lonja', 'Lj3C793G9' => 'lonja', 'Lj4g0012960' => 'lja', 'Lj5g0021252' => 'lja', 'Lj5g0021484' => 'lja', 'Lj5g0024528' => 'lja', 'Lj6A399T12' => 'lonja', 'Lj6A656G65' => 'lonja', 'Lsat_1_v5_gn_3_125500' => 'lsa', 'Lsat_1_v5_gn_3_125540' => 'lsa', 'Lsat_1_v5_gn_5_72701' => 'lsa', 'Lsat_1_v5_gn_8_91560' => 'lsa', 'Lsat_1_v5_gn_9_9640' => 'lsa', 'Manes.01G200600' => 'mes', 'Manes.01G200700' => 'mes', 'Manes.03G168900' => 'mes', 'Manes.03G169000' => 'mes', 'Manes.05G085801' => 'mes', 'Manes.05G086200' => 'mes', 'Manes.15G036700' => 'mes', 'Manes.15G036900' => 'mes', 'Mapoly0004s0172' => 'mpo', 'Mapoly0023s0001' => 'mpo', 'Mapoly0142s0012' => 'mpo', 'MBI01_g32854_MAGBIO' => 'mbi', 'MBI11_g24427_MAGBIO' => 'mbi', 'MBI11_g47319_MAGBIO' => 'mbi', 'MCO01G433' => 'mco', 'MD00G1187800' => 'mdo', 'MD04G1226500' => 'mdo', 'MD05G1203900' => 'mdo', 'MD10G1191100' => 'mdo', 'MD12G1243500' => 'mdo', 'MD13G1207000' => 'mdo', 'MD13G1207100' => 'mdo', 'MD16G1208600' => 'mdo', 'Medtr1g050352' => 'mtr', 'Medtr1g070385' => 'mtr', 'Medtr1g070450' => 'mtr', 'Medtr1g075200' => 'mtr', 'Medtr1g075250' => 'mtr', 'Medtr1g075260' => 'mtr', 'Medtr1g475250' => 'mtr', 'Medtr4g075450' => 'mtr', 'Medtr7g096300' => 'mtr', 'Medtr8g105110' => 'mtr', 'MELO3C006470.2' => 'cme', 'MELO3C006471.2' => 'cme', 'MELO3C020772.2' => 'cme', 'MELO3C026780.2' => 'cme', 'MELO3C026781.2' => 'cme', 'Migut.D00390' => 'egut', 'Migut.G00435' => 'egut', 'Migut.G00436' => 'egut', 'Migut.G00718' => 'egut', 'MSTRG.21891' => 'ama', 'MSTRG.26910' => 'ama', 'MSTRG.4099' => 'ama', 'MSTRG.9925' => 'ama', 'Nitab4.5_0000165g0010' => 'nta', 'Nitab4.5_0000209g0180' => 'nta', 'Nitab4.5_0000244g0440' => 'nta', 'Nitab4.5_0000525g0220' => 'nta', 'Nitab4.5_0001597g0020' => 'nta', 'Nitab4.5_0001878g0040' => 'nta', 'Nitab4.5_0001878g0060' => 'nta', 'Nitab4.5_0002838g0100' => 'nta', 'Nitab4.5_0002838g0120' => 'nta', 'Nitab4.5_0004798g0030' => 'nta', 'Nitab4.5_0005420g0010' => 'nta', 'Nitab4.5_0005507g0010' => 'nta', 'Nitab4.5_0005574g0020' => 'nta', 'Nitab4.5_0005838g0010' => 'nta', 'Nitab4.5_0010580g0020' => 'nta', 'Nn1g02599' => 'nnu', 'Nn1g02608' => 'nnu', 'Nn3g17742' => 'nnu', 'Nn3g19534' => 'nnu', 'Nn3g19535' => 'nnu', 'Oeu008790.1' => 'oeu', 'Oeu008792.1' => 'oeu', 'Oeu032590.1' => 'oeu', 'Oeu035349.1' => 'oeu', 'Oeu049791.1' => 'oeu', 'Os01g0774500' => 'osa', 'Os03g0628800' => 'osa', 'Os03g0798600' => 'osa', 'Os05g0508800' => 'osa', 'Peaxi162Scf00036g02018' => 'pax', 'Peaxi162Scf00578g00032' => 'pax', 'Peaxi162Scf00578g00317' => 'pax', 'Peaxi162Scf00785g00114' => 'pax', 'Peaxi162Scf00813g00119' => 'pax', 'Peaxi162Scf00906g00227' => 'pax', 'PGR004G0875' => 'pgr', 'PGR004G2424' => 'pgr', 'PGR031G1239' => 'pgr', 'PGR031G2474' => 'pgr', 'PGR044G0423' => 'pgr', 'PGSC0003DMG400001128' => 'stu', 'PGSC0003DMG400007336' => 'stu', 'PGSC0003DMG400016318' => 'stu', 'PGSC0003DMG400016319' => 'stu', 'PGSC0003DMG400018074' => 'stu', 'Phvul.001G157700' => 'pvu', 'Phvul.002G148550' => 'pvu', 'Phvul.002G320200' => 'pvu', 'Phvul.003G089200' => 'pvu', 'Phvul.007G126000' => 'pvu', 'Phvul.007G126100' => 'pvu', 'Phvul.007G178000' => 'pvu', 'Phvul.007G178200' => 'pvu', 'Potri.002G043000' => 'ptr', 'Potri.002G043200' => 'ptr', 'Potri.003G123750' => 'ptr', 'Potri.005G055401' => 'ptr', 'Potri.005G219700' => 'ptr', 'Potri.005G220000' => 'ptr', 'Potri.008G161901' => 'ptr', 'Potri.008G162000' => 'ptr', 'Potri.008G162400' => 'ptr', 'Potri.010G076900' => 'ptr', 'Pp3c12_9180' => 'ppa', 'Pp3c13_19770' => 'ppa', 'Pp3c14_22950' => 'ppa', 'Pp3c16_12160' => 'ppa', 'Pp3c27_7820' => 'ppa', 'Pp3c2_3490' => 'ppa', 'Pp3c3_23700' => 'ppa', 'Pp3c3_36520' => 'ppa', 'Pp3c4_15250' => 'ppa', 'PRCOL_00007002' => 'pco', 'Prupe.1G030600' => 'ppe', 'Prupe.1G030700' => 'ppe', 'Prupe.6G345200' => 'ppe', 'Prupe.8G230300' => 'ppe', 'Prupe.8G230500' => 'ppe', 'Psat3g059600' => 'psa', 'Psat5g200920' => 'psa', 'Psat6g056440' => 'psa', 'Psat6g057360' => 'psa', 'Psat6g134120' => 'psa', 'Psat6g134160' => 'psa', 'Psat7g008640' => 'psa', 'Psat7g185240' => 'psa', 'PSO017G1330' => 'pso', 'PSO063G6097' => 'pso', 'PSO170G0835' => 'pso', 'PSO170G2499' => 'pso', 'PSO210G5058' => 'pso', 'PSO210G6154' => 'pso', 'PSO585G0031' => 'pso', 'PSO832G0264' => 'pso', 'PSO832G4288' => 'pso', 'QL03p027355' => 'qlo', 'QL03p027430' => 'qlo', 'QL04p081380' => 'qlo', 'QL06p015642' => 'qlo', 'QL06p015650' => 'qlo', 'QL06p015686' => 'qlo', 'QL12p042927' => 'qlo', 'QL93p1863_0035' => 'qlo', 'RcHm_v2.0_Chr3g0450581' => 'rch', 'RcHm_v2.0_Chr4g0390371' => 'rch', 'RcHm_v2.0_Chr4g0390381' => 'rch', 'RcHm_v2.0_Chr4g0390491' => 'rch', 'RcHm_v2.0_Chr4g0390501' => 'rch', 'RcHm_v2.0_Chr6g0289231' => 'rch', 'Rhsim04G0190400' => 'rsi', 'Rhsim04G0190500' => 'rsi', 'Rhsim04G0190600' => 'rsi', 'Rhsim13G0031400' => 'rsi', 'Rhsim13G0165600' => 'rsi', 'RhsimUnG0114600' => 'rsi', 'RhsimUnG0114700' => 'rsi', 'Sabra02G0034800' => 'sbr', 'Sabra02G0035100' => 'sbr', 'Sabra05G0168600' => 'sbr', 'Sabra05G0168800' => 'sbr', 'Sabra08G0123700' => 'sbr', 'Sabra10G0031900' => 'sbr', 'Sabra13G0039000' => 'sbr', 'SalBow2G0782' => 'sbo', 'SalBow2G1403' => 'sbo', 'SalBow4G0074' => 'sbo', 'SalBow4G2635' => 'sbo', 'SalBow5G3010' => 'sbo', 'Sc05g0000870' => 'sci', 'Sc05g0000890' => 'sci', 'Sc13g0005000' => 'sci', 'Sc13g0005030' => 'sci', 'Sc19g0003790' => 'sci', 'Sc19g0003800' => 'sci', 'Sed0003467' => 'sed', 'Sed0009355' => 'sed', 'Sed0009894' => 'sed', 'Sed0011972' => 'sed', 'Sed0021483' => 'sed', 'Sed0021750' => 'sed', 'Sed0026279' => 'sed', 'SEGI_05312' => 'sgi', 'SEGI_10112' => 'sgi', 'SEGI_15835' => 'sgi', 'SEGI_30386' => 'sgi', 'SEGI_34122' => 'sgi', 'SEGI_35063' => 'sgi', 'SGA_v2.0_scaffold101G29794' => 'sas', 'SGA_v2.0_scaffold1G00573' => 'sas', 'SGA_v2.0_scaffold79G25637' => 'sas', 'SGA_v2.0_scaffold88G27283' => 'sas', 'SGA_v2.0_scaffold88G27285' => 'sas', 'SGA_v2.0_scaffold88G27331' => 'sas', 'SHI09937' => 'shi', 'SMO119G0302' => 'smo', 'SMO137G0231' => 'smo', 'SMO367G1151' => 'smo', 'Solyc02g082000.3' => 'sly', 'Solyc06g031670.3' => 'sly', 'Solyc06g053810.3' => 'sly', 'Solyc07g025457.1' => 'sly', 'Solyc08g059740.1' => 'sly', 'Solyc08g059750.3' => 'sly', 'Solyc09g083370.3' => 'sly', 'Solyc12g038950.3' => 'sly', 'Sopen02g026630' => 'spe', 'Sopen06g018930' => 'spe', 'Sopen06g018940' => 'spe', 'Sopen08g009460' => 'spe', 'Sopen09g032290' => 'spe', 'Sp1g03080' => 'spa', 'Sp1g03090' => 'spa', 'Sp1g05480' => 'spa', 'Sp2g07860' => 'spa', 'Sp2g08430' => 'spa', 'Sp2g08440' => 'spa', 'Sp2g26200' => 'spa', 'Sp4g13170' => 'spa', 'Sp6g33840' => 'spa', 'SpUn1204_0010' => 'spa', 'TAR365G0908' => 'tar', 'TAR381G1270' => 'tar', 'TAR381G1651' => 'tar', 'TAR625G1131' => 'tar', 'TAR633G0962' => 'tar', 'TAR633G1729' => 'tar', 'TAR633G1864' => 'tar', 'TAR636G0221' => 'tar', 'TAR636G0314' => 'tar', 'TAR636G3202' => 'tar', 'THA.LOC104800805' => 'tha', 'THA.LOC104801096' => 'tha', 'THA.LOC104801555' => 'tha', 'THA.LOC104808491' => 'tha', 'THA.LOC104808595' => 'tha', 'THA.LOC104815985' => 'tha', 'THA.LOC104822250' => 'tha', 'THA.LOC104826071' => 'tha', 'Thecc.01G265200' => 'tca', 'Thecc.01G265300' => 'tca', 'Thecc.01G265700' => 'tca', 'Thecc.03G109100' => 'tca', 'Thecc.04G245900' => 'tca', 'Thecc.04G246000' => 'tca', 'Thhalv10003334m.g' => 'esa', 'Thhalv10005508m.g' => 'esa', 'Thhalv10005643m.g' => 'esa', 'Thhalv10007316m.g' => 'esa', 'Thhalv10009006m.g' => 'esa', 'Thhalv10009309m.g' => 'esa', 'Thhalv10014917m.g' => 'esa', 'Thhalv10014919m.g' => 'esa', 'Thhalv10015393m.g' => 'esa', 'Thhalv10016515m.g' => 'esa', 'Thhalv10029242m.g' => 'esa', 'TPR.G16654' => 'tpr', 'TPR.G20589' => 'tpr', 'TPR.G23029' => 'tpr', 'TPR.G27731' => 'tpr', 'TPR.G28889' => 'tpr', 'TPR.G28899' => 'tpr', 'TPR.G30846' => 'tpr', 'TPR.G5452' => 'tpr', 'TPR.G5713' => 'tpr', 'TPR.G9046' => 'tpr', 'TPR.G9061' => 'tpr', 'TWI09G1075' => 'twi', 'TWI12G0806' => 'twi', 'TWI18G0108' => 'twi', 'TWI53G1361' => 'twi', 'TWI73G0185' => 'twi', 'TWI73G0427' => 'twi', 'unitig_37.g12001' => 'ugi', 'unitig_747.g21660' => 'ugi', 'unitig_748.g7232' => 'ugi', 'unitig_748.g7315' => 'ugi', 'unitig_85.g27262' => 'ugi', 'unitig_92.g28220' => 'ugi', 'vmacro02632' => 'vma', 'vmacro08410' => 'vma', 'vmacro08411' => 'vma', 'vmacro15407' => 'vma', 'VMungo0251G3619' => 'vmu', 'VMungo0720G1204' => 'vmu', 'VMungo0720G1918' => 'vmu', 'VMungo0720G2387' => 'vmu', 'VMungo0720G2961' => 'vmu', 'VMungo1215G2154' => 'vmu', 'VMungo1383G2411' => 'vmu', 'Zm00001eb051130' => 'zma', 'Zm00001eb116830' => 'zma', 'Zm00001eb116850' => 'zma', 'Zm00001eb151740' => 'zma', 'Zm00001eb292360' => 'zma', 'Zm00001eb301640' => 'zma' ) $gf_id = 'HOM05D000856' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000856' ) $data_identifier = 'HOM05D000856' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 13, 'ath' => (int) 10, 'atr' => (int) 1, 'acertr' => (int) 8, 'cqu' => (int) 6, 'bca' => (int) 21, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 11, 'car' => (int) 9, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 8, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 5, 'fan' => (int) 16, 'fve' => (int) 6, 'gma' => (int) 11, 'ghi' => (int) 19, 'gra' => (int) 9, 'vvi' => (int) 7, 'han' => (int) 17, 'cav' => (int) 5, 'hma' => (int) 2, 'vpl' => (int) 2, 'sun' => (int) 7, 'lal' => (int) 9, 'lja' => (int) 5, 'lonja' => (int) 9, 'lsa' => (int) 5, 'mes' => (int) 8, 'mpo' => (int) 3, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 10, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 15, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 9, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 9, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 6, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 5, 'spa' => (int) 10, 'tar' => (int) 10, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 11, 'tpr' => (int) 11, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 4, 'vmu' => (int) 7, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb301640' $species_info = array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ) $local_species = 'nta' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000856', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p00010' => 'bna', 'A03p04160' => 'bna', 'A03p17160' => 'bna', 'A04p23370' => 'bna', 'A05p14860' => 'bna', 'A08p37020' => 'bna', 'A09p08050' => 'bna', 'A09p66800' => 'bna', 'A09p67940' => 'bna', 'A10p02680' => 'bna', 'A10p05320' => 'bna', 'Aa31LG1G20560' => 'aar', 'Aa31LG1G20610' => 'aar', 'Aa31LG1G7810' => 'aar', 'Aa31LG5G3590' => 'aar', 'Aa31LG5G6140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3819' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4683' => 'aag', 'Actinidia04480' => 'ach', 'Actinidia05466' => 'ach', 'Actinidia08445' => 'ach', 'Actinidia21170' => 'ach', 'Actinidia24812' => 'ach', 'Actinidia24951' => 'ach', 'Actinidia40088' => 'ach', 'Ah.02g111660' => 'amhyb', 'Ah.11g048900' => 'amhyb', 'Ah.11g049910' => 'amhyb', 'AL1G13870' => 'aly', 'AL1G13880' => 'aly', 'AL1G16760' => 'aly', 'AL390U10020' => 'aly', 'AL4G25520' => 'aly', 'AL6G19890' => 'aly', 'AL6G19900' => 'aly', 'AL6G19910' => 'aly', 'AL8G40100' => 'aly', 'Aqoxy2G03562' => 'aox', 'Aqoxy5G00316' => 'aox', 'Aqoxy5G00926' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1628KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1H403S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2FU6SJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.882I6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8YRY2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YN1SN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AF70II' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZA8L1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F916KL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHRD8H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KTZ8QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S22EMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8M29T' => 'arhy', 'AT1G04270' => 'ath', 'AT1G04280' => 'ath', 'AT1G06750' => 'ath', 'AT1G33850' => 'ath', 'AT2G30630' => 'ath', 'AT5G09490' => 'ath', 'AT5G09500' => 'ath', 'AT5G09510' => 'ath', 'AT5G43640' => 'ath', 'AT5G63070' => 'ath', 'ATR0605G315' => 'atr', 'Atru.chr11.175' => 'acertr', 'Atru.chr11.653' => 'acertr', 'Atru.chr3.1616' => 'acertr', 'Atru.chr4.2230' => 'acertr', 'Atru.chr4.2232' => 'acertr', 'Atru.chr5.1598' => 'acertr', 'Atru.chr5.1600' => 'acertr', 'Atru.chr5.2188' => 'acertr', 'AUR62008326' => 'cqu', 'AUR62011922' => 'cqu', 'AUR62011924' => 'cqu', 'AUR62021771' => 'cqu', 'AUR62032237' => 'cqu', 'AUR62032240' => 'cqu', 'BcaB01g05572' => 'bca', 'BcaB02g10337' => 'bca', 'BcaB04g19944' => 'bca', 'BcaB05g21548' => 'bca', 'BcaB05g21549' => 'bca', 'BcaB05g23227' => 'bca', 'BcaB06g26256' => 'bca', 'BcaB06g26257' => 'bca', 'BcaB06g28379' => 'bca', 'BcaC02g11159' => 'bca', 'BcaC03g13258' => 'bca', 'BcaC03g13259' => 'bca', 'BcaC05g24456' => 'bca', 'BcaC05g24457' => 'bca', 'BcaC07g36922' => 'bca', 'BcaC07g36923' => 'bca', 'BcaC07g42050' => 'bca', 'BcaC07g42176' => 'bca', 'BcaC07g42195' => 'bca', 'BcaC07g42196' => 'bca', 'BcaNung06674' => 'bca', 'BolC2t06351H' => 'bol', 'BolC2t06352H' => 'bol', 'BolC3t12993H' => 'bol', 'BolC4t23525H' => 'bol', 'BolC4t27475H' => 'bol', 'BolC5t29025H' => 'bol', 'BolC5t29026H' => 'bol', 'BolC8t46898H' => 'bol', 'BolC8t46899H' => 'bol', 'BolC8t52630H' => 'bol', 'BolC8t52765H' => 'bol', 'BolC9t53824H' => 'bol', 'BraA03t09760Z' => 'bra', 'BraA03t10990Z' => 'bra', 'BraA05t20413Z' => 'bra', 'BraA08t35602Z' => 'bra', 'BraA09t36458Z' => 'bra', 'BraA09t42018Z' => 'bra', 'BraA09t42129Z' => 'bra', 'BraA10t42536Z' => 'bra', 'BraA10t42537Z' => 'bra', 'C01p10690' => 'bna', 'C02p03890' => 'bna', 'C02p03900' => 'bna', 'C03p04620' => 'bna', 'C04p19870' => 'bna', 'C04p59670' => 'bna', 'C05p02460' => 'bna', 'C05p02470' => 'bna', 'C08p00980' => 'bna', 'C08p00990' => 'bna', 'C08p51030' => 'bna', 'C08p52360' => 'bna', 'C09p09120' => 'bna', 'CAN.G19.15' => 'can', 'CAN.G251.10' => 'can', 'CAN.G251.9' => 'can', 'CAN.G398.24' => 'can', 'CAN.G410.32' => 'can', 'CAN.G881.2' => 'can', 'CANSAT01G3025' => 'cansat', 'CANSAT78G1211' => 'cansat', 'CANSAT78G1218' => 'cansat', 'CANSAT78G1521' => 'cansat', 'CANSAT78G1670' => 'cansat', 'CARHR003600' => 'chi', 'CARHR003610' => 'chi', 'CARHR006290' => 'chi', 'CARHR006430' => 'chi', 'CARHR124110' => 'chi', 'CARHR203870' => 'chi', 'CARHR203880' => 'chi', 'CARHR203890' => 'chi', 'CARHR276880' => 'chi', 'Carub.0001s0346' => 'cru', 'Carub.0001s0347' => 'cru', 'Carub.0001s0607' => 'cru', 'Carub.0003s2768' => 'cru', 'Carub.0003s2769' => 'cru', 'Carub.0004s1178' => 'cru', 'Carub.0006s0806' => 'cru', 'Carub.0006s0807' => 'cru', 'Carub.0006s0808' => 'cru', 'Carub.0008s0501' => 'cru', 'Carub.0008s2379' => 'cru', 'Ca_08655_v3' => 'car', 'Ca_08922_v3' => 'car', 'Ca_08923_v3' => 'car', 'Ca_09119_v3' => 'car', 'Ca_09703_v3' => 'car', 'Ca_09705_v3' => 'car', 'Ca_09835_v3' => 'car', 'Ca_26403_v3' => 'car', 'Ca_30719_v3' => 'car', 'CBR_g17958' => 'cbr', 'CBR_g40516' => 'cbr', 'Cc00_g05350' => 'ccan', 'Cc01_g18690' => 'ccan', 'Cc03_g04830' => 'ccan', 'Cc03_g04850' => 'ccan', 'CDE02G4469' => 'cde', 'CDE06G0883' => 'cde', 'CDE06G1295' => 'cde', 'CDE06G1390' => 'cde', 'CDE07G0584' => 'cde', 'CDE07G1084' => 'cde', 'CDE08G1259' => 'cde', 'Cfa002341' => 'cfa', 'Cfa024337' => 'cfa', 'Ciclev10004749m.g' => 'ccl', 'Ciclev10006127m.g' => 'ccl', 'Ciclev10019720m.g' => 'ccl', 'Ciclev10022652m.g' => 'ccl', 'CiPaw.01G190400' => 'cil', 'CiPaw.01G190500' => 'cil', 'CiPaw.02G116400' => 'cil', 'CiPaw.02G116500' => 'cil', 'CiPaw.04G183000' => 'cil', 'CiPaw.04G183300' => 'cil', 'ClCG05G004610' => 'cla', 'ClCG05G004620' => 'cla', 'ClCG06G006730' => 'cla', 'ClCG06G006740' => 'cla', 'ClCG11G003690' => 'cla', 'COL.COLO4_08276' => 'col', 'COL.COLO4_08277' => 'col', 'COL.COLO4_15787' => 'col', 'COL.COLO4_15789' => 'col', 'Cpa.g.c44815' => 'cpa', 'Cpa.g.sc52.144' => 'cpa', 'Cpa.g.sc58.46' => 'cpa', 'Cpa.g.sc58.47' => 'cpa', 'Cre08.g360900' => 'cre', 'CsaV3_2G013030' => 'csa', 'CsaV3_2G013050' => 'csa', 'CsaV3_2G015620' => 'csa', 'CsaV3_3G012590' => 'csa', 'CsaV3_3G012600' => 'csa', 'CSS0001641' => 'camsi', 'CSS0008310' => 'camsi', 'CSS0013011' => 'camsi', 'CSS0017147' => 'camsi', 'CSS0022970' => 'camsi', 'CSS0025655' => 'camsi', 'CSS0028665' => 'camsi', 'CSS0029117' => 'camsi', 'CSS0032024' => 'camsi', 'CSS0039681' => 'camsi', 'CSS0046516' => 'camsi', 'CSS0050307' => 'camsi', 'DCAR_005871' => 'dca', 'DCAR_007342' => 'dca', 'DCAR_024228' => 'dca', 'DCAR_027277' => 'dca', 'DCAR_030718' => 'dca', 'Dinv20287' => 'din', 'Dinv22461' => 'din', 'Dinv22464' => 'din', 'Dinv29912' => 'din', 'Dinv29913' => 'din', 'Dinv34580' => 'din', 'Dinv34582' => 'din', 'Dinv44632' => 'din', 'Duzib052G0266' => 'dzi', 'Duzib133G0907' => 'dzi', 'Duzib133G1034' => 'dzi', 'Duzib138G0207' => 'dzi', 'Duzib138G0491' => 'dzi', 'Duzib151G0812' => 'dzi', 'Duzib151G1166' => 'dzi', 'Duzib168G0192' => 'dzi', 'Duzib211G0077' => 'dzi', 'Duzib212G0429' => 'dzi', 'Duzib212G0472' => 'dzi', 'ECA233G2617' => 'eca', 'ECA236G4188' => 'eca', 'ECA240G0936' => 'eca', 'ECA240G1129' => 'eca', 'ECA247G0623' => 'eca', 'EL10Ac5g10451' => 'bvu', 'EL10Ac5g10453' => 'bvu', 'EL10Ac5g10894' => 'bvu', 'Eucgr.H00192' => 'egr', 'Eucgr.H00193' => 'egr', 'Eucgr.H00194' => 'egr', 'Eucgr.J01562' => 'egr', 'Eucgr.K03301' => 'egr', 'FAN02G0632' => 'fan', 'FAN05G5378' => 'fan', 'FAN09G3247' => 'fan', 'FAN12G0435' => 'fan', 'FAN12G2426' => 'fan', 'FAN14G1707' => 'fan', 'FAN14G4725' => 'fan', 'FAN15G2071' => 'fan', 'FAN17G3065' => 'fan', 'FAN19G1376' => 'fan', 'FAN20G0354' => 'fan', 'FAN20G2429' => 'fan', 'FAN20G2658' => 'fan', 'FAN24G2343' => 'fan', 'FAN27G2362' => 'fan', 'FAN28G1765' => 'fan', 'FvH4_1g16020' => 'fve', 'FvH4_2g04890' => 'fve', 'FvH4_2g22270' => 'fve', 'FvH4_4g02630' => 'fve', 'FvH4_4g02640' => 'fve', 'FvH4_6g02650' => 'fve', 'Glyma.02G140600' => 'gma', 'Glyma.03G159900' => 'gma', 'Glyma.05G234800' => 'gma', 'Glyma.07G269600' => 'gma', 'Glyma.08G042300' => 'gma', 'Glyma.10G033500' => 'gma', 'Glyma.10G185200' => 'gma', 'Glyma.17G004300' => 'gma', 'Glyma.19G161900' => 'gma', 'Glyma.20G205100' => 'gma', 'Glyma.20G205200' => 'gma', 'Gohir.A01G139101' => 'ghi', 'Gohir.A02G035600' => 'ghi', 'Gohir.A02G117901' => 'ghi', 'Gohir.A07G210100' => 'ghi', 'Gohir.A07G210200' => 'ghi', 'Gohir.A08G061100' => 'ghi', 'Gohir.A09G223000' => 'ghi', 'Gohir.A09G223100' => 'ghi', 'Gohir.A10G113900' => 'ghi', 'Gohir.A10G114000' => 'ghi', 'Gohir.D02G042300' => 'ghi', 'Gohir.D07G216100' => 'ghi', 'Gohir.D07G216200' => 'ghi', 'Gohir.D08G070400' => 'ghi', 'Gohir.D09G225000' => 'ghi', 'Gohir.D09G225100' => 'ghi', 'Gohir.D10G152300' => 'ghi', 'Gohir.D10G153200' => 'ghi', 'Gohir.D11G133701' => 'ghi', 'Gorai.004G074100' => 'gra', 'Gorai.005G046800' => 'gra', 'Gorai.006G246500' => 'gra', 'Gorai.006G246600' => 'gra', 'Gorai.007G142900' => 'gra', 'Gorai.011G171000' => 'gra', 'Gorai.011G171100' => 'gra', 'Gorai.013G104300' => 'gra', 'Gorai.013G104400' => 'gra', 'GSVIVG01000754001' => 'vvi', 'GSVIVG01000756001' => 'vvi', 'GSVIVG01010903001' => 'vvi', 'GSVIVG01017623001' => 'vvi', 'GSVIVG01018113001' => 'vvi', 'GSVIVG01018116001' => 'vvi', 'GSVIVG01018118001' => 'vvi', 'HanXRQChr03g0076211' => 'han', 'HanXRQChr03g0092431' => 'han', 'HanXRQChr03g0092441' => 'han', 'HanXRQChr03g0092591' => 'han', 'HanXRQChr03g0092671' => 'han', 'HanXRQChr03g0092681' => 'han', 'HanXRQChr03g0092691' => 'han', 'HanXRQChr03g0092701' => 'han', 'HanXRQChr03g0092721' => 'han', 'HanXRQChr03g0092731' => 'han', 'HanXRQChr04g0113681' => 'han', 'HanXRQChr10g0281371' => 'han', 'HanXRQChr11g0337141' => 'han', 'HanXRQChr13g0424521' => 'han', 'HanXRQChr13g0424531' => 'han', 'HanXRQChr13g0424541' => 'han', 'HanXRQChr16g0498221' => 'han', 'Haze_04377' => 'cav', 'Haze_11298' => 'cav', 'Haze_24547' => 'cav', 'Haze_24550' => 'cav', 'Haze_26587' => 'cav', 'Hma1.2p1_0650F.1_g195410' => 'hma', 'Hma1.2p1_0893F.1_g233470' => 'hma', 'HPP92_006508' => 'vpl', 'HPP92_024780' => 'vpl', 'Hund02688' => 'sun', 'Hund09380' => 'sun', 'Hund09381' => 'sun', 'Hund09832' => 'sun', 'Hund09833' => 'sun', 'Hund11351' => 'sun', 'Hund11513' => 'sun', 'Lalb_Chr06g0162591' => 'lal', 'Lalb_Chr06g0162601' => 'lal', 'Lalb_Chr06g0169321' => 'lal', 'Lalb_Chr09g0330951' => 'lal', 'Lalb_Chr16g0387631' => 'lal', 'Lalb_Chr21g0306241' => 'lal', 'Lalb_Chr25g0290051' => 'lal', 'Lalb_Chr25g0290061' => 'lal', 'Lalb_Chr25g0290071' => 'lal', 'Lj1g0003876' => 'lja', 'Lj1P1207T36' => 'lonja', 'Lj2C1156G12' => 'lonja', 'Lj3A793G39' => 'lonja', 'Lj3C580G2' => 'lonja', 'Lj3C780G2' => 'lonja', 'Lj3C780T4' => 'lonja', 'Lj3C793G9' => 'lonja', 'Lj4g0012960' => 'lja', 'Lj5g0021252' => 'lja', 'Lj5g0021484' => 'lja', 'Lj5g0024528' => 'lja', 'Lj6A399T12' => 'lonja', 'Lj6A656G65' => 'lonja', 'Lsat_1_v5_gn_3_125500' => 'lsa', 'Lsat_1_v5_gn_3_125540' => 'lsa', 'Lsat_1_v5_gn_5_72701' => 'lsa', 'Lsat_1_v5_gn_8_91560' => 'lsa', 'Lsat_1_v5_gn_9_9640' => 'lsa', 'Manes.01G200600' => 'mes', 'Manes.01G200700' => 'mes', 'Manes.03G168900' => 'mes', 'Manes.03G169000' => 'mes', 'Manes.05G085801' => 'mes', 'Manes.05G086200' => 'mes', 'Manes.15G036700' => 'mes', 'Manes.15G036900' => 'mes', 'Mapoly0004s0172' => 'mpo', 'Mapoly0023s0001' => 'mpo', 'Mapoly0142s0012' => 'mpo', 'MBI01_g32854_MAGBIO' => 'mbi', 'MBI11_g24427_MAGBIO' => 'mbi', 'MBI11_g47319_MAGBIO' => 'mbi', 'MCO01G433' => 'mco', 'MD00G1187800' => 'mdo', 'MD04G1226500' => 'mdo', 'MD05G1203900' => 'mdo', 'MD10G1191100' => 'mdo', 'MD12G1243500' => 'mdo', 'MD13G1207000' => 'mdo', 'MD13G1207100' => 'mdo', 'MD16G1208600' => 'mdo', 'Medtr1g050352' => 'mtr', 'Medtr1g070385' => 'mtr', 'Medtr1g070450' => 'mtr', 'Medtr1g075200' => 'mtr', 'Medtr1g075250' => 'mtr', 'Medtr1g075260' => 'mtr', 'Medtr1g475250' => 'mtr', 'Medtr4g075450' => 'mtr', 'Medtr7g096300' => 'mtr', 'Medtr8g105110' => 'mtr', 'MELO3C006470.2' => 'cme', 'MELO3C006471.2' => 'cme', 'MELO3C020772.2' => 'cme', 'MELO3C026780.2' => 'cme', 'MELO3C026781.2' => 'cme', 'Migut.D00390' => 'egut', 'Migut.G00435' => 'egut', 'Migut.G00436' => 'egut', 'Migut.G00718' => 'egut', 'MSTRG.21891' => 'ama', 'MSTRG.26910' => 'ama', 'MSTRG.4099' => 'ama', 'MSTRG.9925' => 'ama', 'Nitab4.5_0000165g0010' => 'nta', 'Nitab4.5_0000209g0180' => 'nta', 'Nitab4.5_0000244g0440' => 'nta', 'Nitab4.5_0000525g0220' => 'nta', 'Nitab4.5_0001597g0020' => 'nta', 'Nitab4.5_0001878g0040' => 'nta', 'Nitab4.5_0001878g0060' => 'nta', 'Nitab4.5_0002838g0100' => 'nta', 'Nitab4.5_0002838g0120' => 'nta', 'Nitab4.5_0004798g0030' => 'nta', 'Nitab4.5_0005420g0010' => 'nta', 'Nitab4.5_0005507g0010' => 'nta', 'Nitab4.5_0005574g0020' => 'nta', 'Nitab4.5_0005838g0010' => 'nta', 'Nitab4.5_0010580g0020' => 'nta', 'Nn1g02599' => 'nnu', 'Nn1g02608' => 'nnu', 'Nn3g17742' => 'nnu', 'Nn3g19534' => 'nnu', 'Nn3g19535' => 'nnu', 'Oeu008790.1' => 'oeu', 'Oeu008792.1' => 'oeu', 'Oeu032590.1' => 'oeu', 'Oeu035349.1' => 'oeu', 'Oeu049791.1' => 'oeu', 'Os01g0774500' => 'osa', 'Os03g0628800' => 'osa', 'Os03g0798600' => 'osa', 'Os05g0508800' => 'osa', 'Peaxi162Scf00036g02018' => 'pax', 'Peaxi162Scf00578g00032' => 'pax', 'Peaxi162Scf00578g00317' => 'pax', 'Peaxi162Scf00785g00114' => 'pax', 'Peaxi162Scf00813g00119' => 'pax', 'Peaxi162Scf00906g00227' => 'pax', 'PGR004G0875' => 'pgr', 'PGR004G2424' => 'pgr', 'PGR031G1239' => 'pgr', 'PGR031G2474' => 'pgr', 'PGR044G0423' => 'pgr', 'PGSC0003DMG400001128' => 'stu', 'PGSC0003DMG400007336' => 'stu', 'PGSC0003DMG400016318' => 'stu', 'PGSC0003DMG400016319' => 'stu', 'PGSC0003DMG400018074' => 'stu', 'Phvul.001G157700' => 'pvu', 'Phvul.002G148550' => 'pvu', 'Phvul.002G320200' => 'pvu', 'Phvul.003G089200' => 'pvu', 'Phvul.007G126000' => 'pvu', 'Phvul.007G126100' => 'pvu', 'Phvul.007G178000' => 'pvu', 'Phvul.007G178200' => 'pvu', 'Potri.002G043000' => 'ptr', 'Potri.002G043200' => 'ptr', 'Potri.003G123750' => 'ptr', 'Potri.005G055401' => 'ptr', 'Potri.005G219700' => 'ptr', 'Potri.005G220000' => 'ptr', 'Potri.008G161901' => 'ptr', 'Potri.008G162000' => 'ptr', 'Potri.008G162400' => 'ptr', 'Potri.010G076900' => 'ptr', 'Pp3c12_9180' => 'ppa', 'Pp3c13_19770' => 'ppa', 'Pp3c14_22950' => 'ppa', 'Pp3c16_12160' => 'ppa', 'Pp3c27_7820' => 'ppa', 'Pp3c2_3490' => 'ppa', 'Pp3c3_23700' => 'ppa', 'Pp3c3_36520' => 'ppa', 'Pp3c4_15250' => 'ppa', 'PRCOL_00007002' => 'pco', 'Prupe.1G030600' => 'ppe', 'Prupe.1G030700' => 'ppe', 'Prupe.6G345200' => 'ppe', 'Prupe.8G230300' => 'ppe', 'Prupe.8G230500' => 'ppe', 'Psat3g059600' => 'psa', 'Psat5g200920' => 'psa', 'Psat6g056440' => 'psa', 'Psat6g057360' => 'psa', 'Psat6g134120' => 'psa', 'Psat6g134160' => 'psa', 'Psat7g008640' => 'psa', 'Psat7g185240' => 'psa', 'PSO017G1330' => 'pso', 'PSO063G6097' => 'pso', 'PSO170G0835' => 'pso', 'PSO170G2499' => 'pso', 'PSO210G5058' => 'pso', 'PSO210G6154' => 'pso', 'PSO585G0031' => 'pso', 'PSO832G0264' => 'pso', 'PSO832G4288' => 'pso', 'QL03p027355' => 'qlo', 'QL03p027430' => 'qlo', 'QL04p081380' => 'qlo', 'QL06p015642' => 'qlo', 'QL06p015650' => 'qlo', 'QL06p015686' => 'qlo', 'QL12p042927' => 'qlo', 'QL93p1863_0035' => 'qlo', 'RcHm_v2.0_Chr3g0450581' => 'rch', 'RcHm_v2.0_Chr4g0390371' => 'rch', 'RcHm_v2.0_Chr4g0390381' => 'rch', 'RcHm_v2.0_Chr4g0390491' => 'rch', 'RcHm_v2.0_Chr4g0390501' => 'rch', 'RcHm_v2.0_Chr6g0289231' => 'rch', 'Rhsim04G0190400' => 'rsi', 'Rhsim04G0190500' => 'rsi', 'Rhsim04G0190600' => 'rsi', 'Rhsim13G0031400' => 'rsi', 'Rhsim13G0165600' => 'rsi', 'RhsimUnG0114600' => 'rsi', 'RhsimUnG0114700' => 'rsi', 'Sabra02G0034800' => 'sbr', 'Sabra02G0035100' => 'sbr', 'Sabra05G0168600' => 'sbr', 'Sabra05G0168800' => 'sbr', 'Sabra08G0123700' => 'sbr', 'Sabra10G0031900' => 'sbr', 'Sabra13G0039000' => 'sbr', 'SalBow2G0782' => 'sbo', 'SalBow2G1403' => 'sbo', 'SalBow4G0074' => 'sbo', 'SalBow4G2635' => 'sbo', 'SalBow5G3010' => 'sbo', 'Sc05g0000870' => 'sci', 'Sc05g0000890' => 'sci', 'Sc13g0005000' => 'sci', 'Sc13g0005030' => 'sci', 'Sc19g0003790' => 'sci', 'Sc19g0003800' => 'sci', 'Sed0003467' => 'sed', 'Sed0009355' => 'sed', 'Sed0009894' => 'sed', 'Sed0011972' => 'sed', 'Sed0021483' => 'sed', 'Sed0021750' => 'sed', 'Sed0026279' => 'sed', 'SEGI_05312' => 'sgi', 'SEGI_10112' => 'sgi', 'SEGI_15835' => 'sgi', 'SEGI_30386' => 'sgi', 'SEGI_34122' => 'sgi', 'SEGI_35063' => 'sgi', 'SGA_v2.0_scaffold101G29794' => 'sas', 'SGA_v2.0_scaffold1G00573' => 'sas', 'SGA_v2.0_scaffold79G25637' => 'sas', 'SGA_v2.0_scaffold88G27283' => 'sas', 'SGA_v2.0_scaffold88G27285' => 'sas', 'SGA_v2.0_scaffold88G27331' => 'sas', 'SHI09937' => 'shi', 'SMO119G0302' => 'smo', 'SMO137G0231' => 'smo', 'SMO367G1151' => 'smo', 'Solyc02g082000.3' => 'sly', 'Solyc06g031670.3' => 'sly', 'Solyc06g053810.3' => 'sly', 'Solyc07g025457.1' => 'sly', 'Solyc08g059740.1' => 'sly', 'Solyc08g059750.3' => 'sly', 'Solyc09g083370.3' => 'sly', 'Solyc12g038950.3' => 'sly', 'Sopen02g026630' => 'spe', 'Sopen06g018930' => 'spe', 'Sopen06g018940' => 'spe', 'Sopen08g009460' => 'spe', 'Sopen09g032290' => 'spe', 'Sp1g03080' => 'spa', 'Sp1g03090' => 'spa', 'Sp1g05480' => 'spa', 'Sp2g07860' => 'spa', 'Sp2g08430' => 'spa', 'Sp2g08440' => 'spa', 'Sp2g26200' => 'spa', 'Sp4g13170' => 'spa', 'Sp6g33840' => 'spa', 'SpUn1204_0010' => 'spa', 'TAR365G0908' => 'tar', 'TAR381G1270' => 'tar', 'TAR381G1651' => 'tar', 'TAR625G1131' => 'tar', 'TAR633G0962' => 'tar', 'TAR633G1729' => 'tar', 'TAR633G1864' => 'tar', 'TAR636G0221' => 'tar', 'TAR636G0314' => 'tar', 'TAR636G3202' => 'tar', 'THA.LOC104800805' => 'tha', 'THA.LOC104801096' => 'tha', 'THA.LOC104801555' => 'tha', 'THA.LOC104808491' => 'tha', 'THA.LOC104808595' => 'tha', 'THA.LOC104815985' => 'tha', 'THA.LOC104822250' => 'tha', 'THA.LOC104826071' => 'tha', 'Thecc.01G265200' => 'tca', 'Thecc.01G265300' => 'tca', 'Thecc.01G265700' => 'tca', 'Thecc.03G109100' => 'tca', 'Thecc.04G245900' => 'tca', 'Thecc.04G246000' => 'tca', 'Thhalv10003334m.g' => 'esa', 'Thhalv10005508m.g' => 'esa', 'Thhalv10005643m.g' => 'esa', 'Thhalv10007316m.g' => 'esa', 'Thhalv10009006m.g' => 'esa', 'Thhalv10009309m.g' => 'esa', 'Thhalv10014917m.g' => 'esa', 'Thhalv10014919m.g' => 'esa', 'Thhalv10015393m.g' => 'esa', 'Thhalv10016515m.g' => 'esa', 'Thhalv10029242m.g' => 'esa', 'TPR.G16654' => 'tpr', 'TPR.G20589' => 'tpr', 'TPR.G23029' => 'tpr', 'TPR.G27731' => 'tpr', 'TPR.G28889' => 'tpr', 'TPR.G28899' => 'tpr', 'TPR.G30846' => 'tpr', 'TPR.G5452' => 'tpr', 'TPR.G5713' => 'tpr', 'TPR.G9046' => 'tpr', 'TPR.G9061' => 'tpr', 'TWI09G1075' => 'twi', 'TWI12G0806' => 'twi', 'TWI18G0108' => 'twi', 'TWI53G1361' => 'twi', 'TWI73G0185' => 'twi', 'TWI73G0427' => 'twi', 'unitig_37.g12001' => 'ugi', 'unitig_747.g21660' => 'ugi', 'unitig_748.g7232' => 'ugi', 'unitig_748.g7315' => 'ugi', 'unitig_85.g27262' => 'ugi', 'unitig_92.g28220' => 'ugi', 'vmacro02632' => 'vma', 'vmacro08410' => 'vma', 'vmacro08411' => 'vma', 'vmacro15407' => 'vma', 'VMungo0251G3619' => 'vmu', 'VMungo0720G1204' => 'vmu', 'VMungo0720G1918' => 'vmu', 'VMungo0720G2387' => 'vmu', 'VMungo0720G2961' => 'vmu', 'VMungo1215G2154' => 'vmu', 'VMungo1383G2411' => 'vmu', 'Zm00001eb051130' => 'zma', 'Zm00001eb116830' => 'zma', 'Zm00001eb116850' => 'zma', 'Zm00001eb151740' => 'zma', 'Zm00001eb292360' => 'zma', 'Zm00001eb301640' => 'zma' ), 'gf_id' => 'HOM05D000856', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000856' ), 'data_identifier' => 'HOM05D000856', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000856', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p00010' => 'bna', 'A03p04160' => 'bna', 'A03p17160' => 'bna', 'A04p23370' => 'bna', 'A05p14860' => 'bna', 'A08p37020' => 'bna', 'A09p08050' => 'bna', 'A09p66800' => 'bna', 'A09p67940' => 'bna', 'A10p02680' => 'bna', 'A10p05320' => 'bna', 'Aa31LG1G20560' => 'aar', 'Aa31LG1G20610' => 'aar', 'Aa31LG1G7810' => 'aar', 'Aa31LG5G3590' => 'aar', 'Aa31LG5G6140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3819' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4683' => 'aag', 'Actinidia04480' => 'ach', 'Actinidia05466' => 'ach', 'Actinidia08445' => 'ach', 'Actinidia21170' => 'ach', 'Actinidia24812' => 'ach', 'Actinidia24951' => 'ach', 'Actinidia40088' => 'ach', 'Ah.02g111660' => 'amhyb', 'Ah.11g048900' => 'amhyb', 'Ah.11g049910' => 'amhyb', 'AL1G13870' => 'aly', 'AL1G13880' => 'aly', 'AL1G16760' => 'aly', 'AL390U10020' => 'aly', 'AL4G25520' => 'aly', 'AL6G19890' => 'aly', 'AL6G19900' => 'aly', 'AL6G19910' => 'aly', 'AL8G40100' => 'aly', 'Aqoxy2G03562' => 'aox', 'Aqoxy5G00316' => 'aox', 'Aqoxy5G00926' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1628KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1H403S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2FU6SJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.882I6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8YRY2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YN1SN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AF70II' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZA8L1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F916KL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHRD8H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KTZ8QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S22EMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8M29T' => 'arhy', 'AT1G04270' => 'ath', 'AT1G04280' => 'ath', 'AT1G06750' => 'ath', 'AT1G33850' => 'ath', 'AT2G30630' => 'ath', 'AT5G09490' => 'ath', 'AT5G09500' => 'ath', 'AT5G09510' => 'ath', 'AT5G43640' => 'ath', 'AT5G63070' => 'ath', 'ATR0605G315' => 'atr', 'Atru.chr11.175' => 'acertr', 'Atru.chr11.653' => 'acertr', 'Atru.chr3.1616' => 'acertr', 'Atru.chr4.2230' => 'acertr', 'Atru.chr4.2232' => 'acertr', 'Atru.chr5.1598' => 'acertr', 'Atru.chr5.1600' => 'acertr', 'Atru.chr5.2188' => 'acertr', 'AUR62008326' => 'cqu', 'AUR62011922' => 'cqu', 'AUR62011924' => 'cqu', 'AUR62021771' => 'cqu', 'AUR62032237' => 'cqu', 'AUR62032240' => 'cqu', 'BcaB01g05572' => 'bca', 'BcaB02g10337' => 'bca', 'BcaB04g19944' => 'bca', 'BcaB05g21548' => 'bca', 'BcaB05g21549' => 'bca', 'BcaB05g23227' => 'bca', 'BcaB06g26256' => 'bca', 'BcaB06g26257' => 'bca', 'BcaB06g28379' => 'bca', 'BcaC02g11159' => 'bca', 'BcaC03g13258' => 'bca', 'BcaC03g13259' => 'bca', 'BcaC05g24456' => 'bca', 'BcaC05g24457' => 'bca', 'BcaC07g36922' => 'bca', 'BcaC07g36923' => 'bca', 'BcaC07g42050' => 'bca', 'BcaC07g42176' => 'bca', 'BcaC07g42195' => 'bca', 'BcaC07g42196' => 'bca', 'BcaNung06674' => 'bca', 'BolC2t06351H' => 'bol', 'BolC2t06352H' => 'bol', 'BolC3t12993H' => 'bol', 'BolC4t23525H' => 'bol', 'BolC4t27475H' => 'bol', 'BolC5t29025H' => 'bol', 'BolC5t29026H' => 'bol', 'BolC8t46898H' => 'bol', 'BolC8t46899H' => 'bol', 'BolC8t52630H' => 'bol', 'BolC8t52765H' => 'bol', 'BolC9t53824H' => 'bol', 'BraA03t09760Z' => 'bra', 'BraA03t10990Z' => 'bra', 'BraA05t20413Z' => 'bra', 'BraA08t35602Z' => 'bra', 'BraA09t36458Z' => 'bra', 'BraA09t42018Z' => 'bra', 'BraA09t42129Z' => 'bra', 'BraA10t42536Z' => 'bra', 'BraA10t42537Z' => 'bra', 'C01p10690' => 'bna', 'C02p03890' => 'bna', 'C02p03900' => 'bna', 'C03p04620' => 'bna', 'C04p19870' => 'bna', 'C04p59670' => 'bna', 'C05p02460' => 'bna', 'C05p02470' => 'bna', 'C08p00980' => 'bna', 'C08p00990' => 'bna', 'C08p51030' => 'bna', 'C08p52360' => 'bna', 'C09p09120' => 'bna', 'CAN.G19.15' => 'can', 'CAN.G251.10' => 'can', 'CAN.G251.9' => 'can', 'CAN.G398.24' => 'can', 'CAN.G410.32' => 'can', 'CAN.G881.2' => 'can', 'CANSAT01G3025' => 'cansat', 'CANSAT78G1211' => 'cansat', 'CANSAT78G1218' => 'cansat', 'CANSAT78G1521' => 'cansat', 'CANSAT78G1670' => 'cansat', 'CARHR003600' => 'chi', 'CARHR003610' => 'chi', 'CARHR006290' => 'chi', 'CARHR006430' => 'chi', 'CARHR124110' => 'chi', 'CARHR203870' => 'chi', 'CARHR203880' => 'chi', 'CARHR203890' => 'chi', 'CARHR276880' => 'chi', 'Carub.0001s0346' => 'cru', 'Carub.0001s0347' => 'cru', 'Carub.0001s0607' => 'cru', 'Carub.0003s2768' => 'cru', 'Carub.0003s2769' => 'cru', 'Carub.0004s1178' => 'cru', 'Carub.0006s0806' => 'cru', 'Carub.0006s0807' => 'cru', 'Carub.0006s0808' => 'cru', 'Carub.0008s0501' => 'cru', 'Carub.0008s2379' => 'cru', 'Ca_08655_v3' => 'car', 'Ca_08922_v3' => 'car', 'Ca_08923_v3' => 'car', 'Ca_09119_v3' => 'car', 'Ca_09703_v3' => 'car', 'Ca_09705_v3' => 'car', 'Ca_09835_v3' => 'car', 'Ca_26403_v3' => 'car', 'Ca_30719_v3' => 'car', 'CBR_g17958' => 'cbr', 'CBR_g40516' => 'cbr', 'Cc00_g05350' => 'ccan', 'Cc01_g18690' => 'ccan', 'Cc03_g04830' => 'ccan', 'Cc03_g04850' => 'ccan', 'CDE02G4469' => 'cde', 'CDE06G0883' => 'cde', 'CDE06G1295' => 'cde', 'CDE06G1390' => 'cde', 'CDE07G0584' => 'cde', 'CDE07G1084' => 'cde', 'CDE08G1259' => 'cde', 'Cfa002341' => 'cfa', 'Cfa024337' => 'cfa', 'Ciclev10004749m.g' => 'ccl', 'Ciclev10006127m.g' => 'ccl', 'Ciclev10019720m.g' => 'ccl', 'Ciclev10022652m.g' => 'ccl', 'CiPaw.01G190400' => 'cil', 'CiPaw.01G190500' => 'cil', 'CiPaw.02G116400' => 'cil', 'CiPaw.02G116500' => 'cil', 'CiPaw.04G183000' => 'cil', 'CiPaw.04G183300' => 'cil', 'ClCG05G004610' => 'cla', 'ClCG05G004620' => 'cla', 'ClCG06G006730' => 'cla', 'ClCG06G006740' => 'cla', 'ClCG11G003690' => 'cla', 'COL.COLO4_08276' => 'col', 'COL.COLO4_08277' => 'col', 'COL.COLO4_15787' => 'col', 'COL.COLO4_15789' => 'col', 'Cpa.g.c44815' => 'cpa', 'Cpa.g.sc52.144' => 'cpa', 'Cpa.g.sc58.46' => 'cpa', 'Cpa.g.sc58.47' => 'cpa', 'Cre08.g360900' => 'cre', 'CsaV3_2G013030' => 'csa', 'CsaV3_2G013050' => 'csa', 'CsaV3_2G015620' => 'csa', 'CsaV3_3G012590' => 'csa', 'CsaV3_3G012600' => 'csa', 'CSS0001641' => 'camsi', 'CSS0008310' => 'camsi', 'CSS0013011' => 'camsi', 'CSS0017147' => 'camsi', 'CSS0022970' => 'camsi', 'CSS0025655' => 'camsi', 'CSS0028665' => 'camsi', 'CSS0029117' => 'camsi', 'CSS0032024' => 'camsi', 'CSS0039681' => 'camsi', 'CSS0046516' => 'camsi', 'CSS0050307' => 'camsi', 'DCAR_005871' => 'dca', 'DCAR_007342' => 'dca', 'DCAR_024228' => 'dca', 'DCAR_027277' => 'dca', 'DCAR_030718' => 'dca', 'Dinv20287' => 'din', 'Dinv22461' => 'din', 'Dinv22464' => 'din', 'Dinv29912' => 'din', 'Dinv29913' => 'din', 'Dinv34580' => 'din', 'Dinv34582' => 'din', 'Dinv44632' => 'din', 'Duzib052G0266' => 'dzi', 'Duzib133G0907' => 'dzi', 'Duzib133G1034' => 'dzi', 'Duzib138G0207' => 'dzi', 'Duzib138G0491' => 'dzi', 'Duzib151G0812' => 'dzi', 'Duzib151G1166' => 'dzi', 'Duzib168G0192' => 'dzi', 'Duzib211G0077' => 'dzi', 'Duzib212G0429' => 'dzi', 'Duzib212G0472' => 'dzi', 'ECA233G2617' => 'eca', 'ECA236G4188' => 'eca', 'ECA240G0936' => 'eca', 'ECA240G1129' => 'eca', 'ECA247G0623' => 'eca', 'EL10Ac5g10451' => 'bvu', 'EL10Ac5g10453' => 'bvu', 'EL10Ac5g10894' => 'bvu', 'Eucgr.H00192' => 'egr', 'Eucgr.H00193' => 'egr', 'Eucgr.H00194' => 'egr', 'Eucgr.J01562' => 'egr', 'Eucgr.K03301' => 'egr', 'FAN02G0632' => 'fan', 'FAN05G5378' => 'fan', 'FAN09G3247' => 'fan', 'FAN12G0435' => 'fan', 'FAN12G2426' => 'fan', 'FAN14G1707' => 'fan', 'FAN14G4725' => 'fan', 'FAN15G2071' => 'fan', 'FAN17G3065' => 'fan', 'FAN19G1376' => 'fan', 'FAN20G0354' => 'fan', 'FAN20G2429' => 'fan', 'FAN20G2658' => 'fan', 'FAN24G2343' => 'fan', 'FAN27G2362' => 'fan', 'FAN28G1765' => 'fan', 'FvH4_1g16020' => 'fve', 'FvH4_2g04890' => 'fve', 'FvH4_2g22270' => 'fve', 'FvH4_4g02630' => 'fve', 'FvH4_4g02640' => 'fve', 'FvH4_6g02650' => 'fve', 'Glyma.02G140600' => 'gma', 'Glyma.03G159900' => 'gma', 'Glyma.05G234800' => 'gma', 'Glyma.07G269600' => 'gma', 'Glyma.08G042300' => 'gma', 'Glyma.10G033500' => 'gma', 'Glyma.10G185200' => 'gma', 'Glyma.17G004300' => 'gma', 'Glyma.19G161900' => 'gma', 'Glyma.20G205100' => 'gma', 'Glyma.20G205200' => 'gma', 'Gohir.A01G139101' => 'ghi', 'Gohir.A02G035600' => 'ghi', 'Gohir.A02G117901' => 'ghi', 'Gohir.A07G210100' => 'ghi', 'Gohir.A07G210200' => 'ghi', 'Gohir.A08G061100' => 'ghi', 'Gohir.A09G223000' => 'ghi', 'Gohir.A09G223100' => 'ghi', 'Gohir.A10G113900' => 'ghi', 'Gohir.A10G114000' => 'ghi', 'Gohir.D02G042300' => 'ghi', 'Gohir.D07G216100' => 'ghi', 'Gohir.D07G216200' => 'ghi', 'Gohir.D08G070400' => 'ghi', 'Gohir.D09G225000' => 'ghi', 'Gohir.D09G225100' => 'ghi', 'Gohir.D10G152300' => 'ghi', 'Gohir.D10G153200' => 'ghi', 'Gohir.D11G133701' => 'ghi', 'Gorai.004G074100' => 'gra', 'Gorai.005G046800' => 'gra', 'Gorai.006G246500' => 'gra', 'Gorai.006G246600' => 'gra', 'Gorai.007G142900' => 'gra', 'Gorai.011G171000' => 'gra', 'Gorai.011G171100' => 'gra', 'Gorai.013G104300' => 'gra', 'Gorai.013G104400' => 'gra', 'GSVIVG01000754001' => 'vvi', 'GSVIVG01000756001' => 'vvi', 'GSVIVG01010903001' => 'vvi', 'GSVIVG01017623001' => 'vvi', 'GSVIVG01018113001' => 'vvi', 'GSVIVG01018116001' => 'vvi', 'GSVIVG01018118001' => 'vvi', 'HanXRQChr03g0076211' => 'han', 'HanXRQChr03g0092431' => 'han', 'HanXRQChr03g0092441' => 'han', 'HanXRQChr03g0092591' => 'han', 'HanXRQChr03g0092671' => 'han', 'HanXRQChr03g0092681' => 'han', 'HanXRQChr03g0092691' => 'han', 'HanXRQChr03g0092701' => 'han', 'HanXRQChr03g0092721' => 'han', 'HanXRQChr03g0092731' => 'han', 'HanXRQChr04g0113681' => 'han', 'HanXRQChr10g0281371' => 'han', 'HanXRQChr11g0337141' => 'han', 'HanXRQChr13g0424521' => 'han', 'HanXRQChr13g0424531' => 'han', 'HanXRQChr13g0424541' => 'han', 'HanXRQChr16g0498221' => 'han', 'Haze_04377' => 'cav', 'Haze_11298' => 'cav', 'Haze_24547' => 'cav', 'Haze_24550' => 'cav', 'Haze_26587' => 'cav', 'Hma1.2p1_0650F.1_g195410' => 'hma', 'Hma1.2p1_0893F.1_g233470' => 'hma', 'HPP92_006508' => 'vpl', 'HPP92_024780' => 'vpl', 'Hund02688' => 'sun', 'Hund09380' => 'sun', 'Hund09381' => 'sun', 'Hund09832' => 'sun', 'Hund09833' => 'sun', 'Hund11351' => 'sun', 'Hund11513' => 'sun', 'Lalb_Chr06g0162591' => 'lal', 'Lalb_Chr06g0162601' => 'lal', 'Lalb_Chr06g0169321' => 'lal', 'Lalb_Chr09g0330951' => 'lal', 'Lalb_Chr16g0387631' => 'lal', 'Lalb_Chr21g0306241' => 'lal', 'Lalb_Chr25g0290051' => 'lal', 'Lalb_Chr25g0290061' => 'lal', 'Lalb_Chr25g0290071' => 'lal', 'Lj1g0003876' => 'lja', 'Lj1P1207T36' => 'lonja', 'Lj2C1156G12' => 'lonja', 'Lj3A793G39' => 'lonja', 'Lj3C580G2' => 'lonja', 'Lj3C780G2' => 'lonja', 'Lj3C780T4' => 'lonja', 'Lj3C793G9' => 'lonja', 'Lj4g0012960' => 'lja', 'Lj5g0021252' => 'lja', 'Lj5g0021484' => 'lja', 'Lj5g0024528' => 'lja', 'Lj6A399T12' => 'lonja', 'Lj6A656G65' => 'lonja', 'Lsat_1_v5_gn_3_125500' => 'lsa', 'Lsat_1_v5_gn_3_125540' => 'lsa', 'Lsat_1_v5_gn_5_72701' => 'lsa', 'Lsat_1_v5_gn_8_91560' => 'lsa', 'Lsat_1_v5_gn_9_9640' => 'lsa', 'Manes.01G200600' => 'mes', 'Manes.01G200700' => 'mes', 'Manes.03G168900' => 'mes', 'Manes.03G169000' => 'mes', 'Manes.05G085801' => 'mes', 'Manes.05G086200' => 'mes', 'Manes.15G036700' => 'mes', 'Manes.15G036900' => 'mes', 'Mapoly0004s0172' => 'mpo', 'Mapoly0023s0001' => 'mpo', 'Mapoly0142s0012' => 'mpo', 'MBI01_g32854_MAGBIO' => 'mbi', 'MBI11_g24427_MAGBIO' => 'mbi', 'MBI11_g47319_MAGBIO' => 'mbi', 'MCO01G433' => 'mco', 'MD00G1187800' => 'mdo', 'MD04G1226500' => 'mdo', 'MD05G1203900' => 'mdo', 'MD10G1191100' => 'mdo', 'MD12G1243500' => 'mdo', 'MD13G1207000' => 'mdo', 'MD13G1207100' => 'mdo', 'MD16G1208600' => 'mdo', 'Medtr1g050352' => 'mtr', 'Medtr1g070385' => 'mtr', 'Medtr1g070450' => 'mtr', 'Medtr1g075200' => 'mtr', 'Medtr1g075250' => 'mtr', 'Medtr1g075260' => 'mtr', 'Medtr1g475250' => 'mtr', 'Medtr4g075450' => 'mtr', 'Medtr7g096300' => 'mtr', 'Medtr8g105110' => 'mtr', 'MELO3C006470.2' => 'cme', 'MELO3C006471.2' => 'cme', 'MELO3C020772.2' => 'cme', 'MELO3C026780.2' => 'cme', 'MELO3C026781.2' => 'cme', 'Migut.D00390' => 'egut', 'Migut.G00435' => 'egut', 'Migut.G00436' => 'egut', 'Migut.G00718' => 'egut', 'MSTRG.21891' => 'ama', 'MSTRG.26910' => 'ama', 'MSTRG.4099' => 'ama', 'MSTRG.9925' => 'ama', 'Nitab4.5_0000165g0010' => 'nta', 'Nitab4.5_0000209g0180' => 'nta', 'Nitab4.5_0000244g0440' => 'nta', 'Nitab4.5_0000525g0220' => 'nta', 'Nitab4.5_0001597g0020' => 'nta', 'Nitab4.5_0001878g0040' => 'nta', 'Nitab4.5_0001878g0060' => 'nta', 'Nitab4.5_0002838g0100' => 'nta', 'Nitab4.5_0002838g0120' => 'nta', 'Nitab4.5_0004798g0030' => 'nta', 'Nitab4.5_0005420g0010' => 'nta', 'Nitab4.5_0005507g0010' => 'nta', 'Nitab4.5_0005574g0020' => 'nta', 'Nitab4.5_0005838g0010' => 'nta', 'Nitab4.5_0010580g0020' => 'nta', 'Nn1g02599' => 'nnu', 'Nn1g02608' => 'nnu', 'Nn3g17742' => 'nnu', 'Nn3g19534' => 'nnu', 'Nn3g19535' => 'nnu', 'Oeu008790.1' => 'oeu', 'Oeu008792.1' => 'oeu', 'Oeu032590.1' => 'oeu', 'Oeu035349.1' => 'oeu', 'Oeu049791.1' => 'oeu', 'Os01g0774500' => 'osa', 'Os03g0628800' => 'osa', 'Os03g0798600' => 'osa', 'Os05g0508800' => 'osa', 'Peaxi162Scf00036g02018' => 'pax', 'Peaxi162Scf00578g00032' => 'pax', 'Peaxi162Scf00578g00317' => 'pax', 'Peaxi162Scf00785g00114' => 'pax', 'Peaxi162Scf00813g00119' => 'pax', 'Peaxi162Scf00906g00227' => 'pax', 'PGR004G0875' => 'pgr', 'PGR004G2424' => 'pgr', 'PGR031G1239' => 'pgr', 'PGR031G2474' => 'pgr', 'PGR044G0423' => 'pgr', 'PGSC0003DMG400001128' => 'stu', 'PGSC0003DMG400007336' => 'stu', 'PGSC0003DMG400016318' => 'stu', 'PGSC0003DMG400016319' => 'stu', 'PGSC0003DMG400018074' => 'stu', 'Phvul.001G157700' => 'pvu', 'Phvul.002G148550' => 'pvu', 'Phvul.002G320200' => 'pvu', 'Phvul.003G089200' => 'pvu', 'Phvul.007G126000' => 'pvu', 'Phvul.007G126100' => 'pvu', 'Phvul.007G178000' => 'pvu', 'Phvul.007G178200' => 'pvu', 'Potri.002G043000' => 'ptr', 'Potri.002G043200' => 'ptr', 'Potri.003G123750' => 'ptr', 'Potri.005G055401' => 'ptr', 'Potri.005G219700' => 'ptr', 'Potri.005G220000' => 'ptr', 'Potri.008G161901' => 'ptr', 'Potri.008G162000' => 'ptr', 'Potri.008G162400' => 'ptr', 'Potri.010G076900' => 'ptr', 'Pp3c12_9180' => 'ppa', 'Pp3c13_19770' => 'ppa', 'Pp3c14_22950' => 'ppa', 'Pp3c16_12160' => 'ppa', 'Pp3c27_7820' => 'ppa', 'Pp3c2_3490' => 'ppa', 'Pp3c3_23700' => 'ppa', 'Pp3c3_36520' => 'ppa', 'Pp3c4_15250' => 'ppa', 'PRCOL_00007002' => 'pco', 'Prupe.1G030600' => 'ppe', 'Prupe.1G030700' => 'ppe', 'Prupe.6G345200' => 'ppe', 'Prupe.8G230300' => 'ppe', 'Prupe.8G230500' => 'ppe', 'Psat3g059600' => 'psa', 'Psat5g200920' => 'psa', 'Psat6g056440' => 'psa', 'Psat6g057360' => 'psa', 'Psat6g134120' => 'psa', 'Psat6g134160' => 'psa', 'Psat7g008640' => 'psa', 'Psat7g185240' => 'psa', 'PSO017G1330' => 'pso', 'PSO063G6097' => 'pso', 'PSO170G0835' => 'pso', 'PSO170G2499' => 'pso', 'PSO210G5058' => 'pso', 'PSO210G6154' => 'pso', 'PSO585G0031' => 'pso', 'PSO832G0264' => 'pso', 'PSO832G4288' => 'pso', 'QL03p027355' => 'qlo', 'QL03p027430' => 'qlo', 'QL04p081380' => 'qlo', 'QL06p015642' => 'qlo', 'QL06p015650' => 'qlo', 'QL06p015686' => 'qlo', 'QL12p042927' => 'qlo', 'QL93p1863_0035' => 'qlo', 'RcHm_v2.0_Chr3g0450581' => 'rch', 'RcHm_v2.0_Chr4g0390371' => 'rch', 'RcHm_v2.0_Chr4g0390381' => 'rch', 'RcHm_v2.0_Chr4g0390491' => 'rch', 'RcHm_v2.0_Chr4g0390501' => 'rch', 'RcHm_v2.0_Chr6g0289231' => 'rch', 'Rhsim04G0190400' => 'rsi', 'Rhsim04G0190500' => 'rsi', 'Rhsim04G0190600' => 'rsi', 'Rhsim13G0031400' => 'rsi', 'Rhsim13G0165600' => 'rsi', 'RhsimUnG0114600' => 'rsi', 'RhsimUnG0114700' => 'rsi', 'Sabra02G0034800' => 'sbr', 'Sabra02G0035100' => 'sbr', 'Sabra05G0168600' => 'sbr', 'Sabra05G0168800' => 'sbr', 'Sabra08G0123700' => 'sbr', 'Sabra10G0031900' => 'sbr', 'Sabra13G0039000' => 'sbr', 'SalBow2G0782' => 'sbo', 'SalBow2G1403' => 'sbo', 'SalBow4G0074' => 'sbo', 'SalBow4G2635' => 'sbo', 'SalBow5G3010' => 'sbo', 'Sc05g0000870' => 'sci', 'Sc05g0000890' => 'sci', 'Sc13g0005000' => 'sci', 'Sc13g0005030' => 'sci', 'Sc19g0003790' => 'sci', 'Sc19g0003800' => 'sci', 'Sed0003467' => 'sed', 'Sed0009355' => 'sed', 'Sed0009894' => 'sed', 'Sed0011972' => 'sed', 'Sed0021483' => 'sed', 'Sed0021750' => 'sed', 'Sed0026279' => 'sed', 'SEGI_05312' => 'sgi', 'SEGI_10112' => 'sgi', 'SEGI_15835' => 'sgi', 'SEGI_30386' => 'sgi', 'SEGI_34122' => 'sgi', 'SEGI_35063' => 'sgi', 'SGA_v2.0_scaffold101G29794' => 'sas', 'SGA_v2.0_scaffold1G00573' => 'sas', 'SGA_v2.0_scaffold79G25637' => 'sas', 'SGA_v2.0_scaffold88G27283' => 'sas', 'SGA_v2.0_scaffold88G27285' => 'sas', 'SGA_v2.0_scaffold88G27331' => 'sas', 'SHI09937' => 'shi', 'SMO119G0302' => 'smo', 'SMO137G0231' => 'smo', 'SMO367G1151' => 'smo', 'Solyc02g082000.3' => 'sly', 'Solyc06g031670.3' => 'sly', 'Solyc06g053810.3' => 'sly', 'Solyc07g025457.1' => 'sly', 'Solyc08g059740.1' => 'sly', 'Solyc08g059750.3' => 'sly', 'Solyc09g083370.3' => 'sly', 'Solyc12g038950.3' => 'sly', 'Sopen02g026630' => 'spe', 'Sopen06g018930' => 'spe', 'Sopen06g018940' => 'spe', 'Sopen08g009460' => 'spe', 'Sopen09g032290' => 'spe', 'Sp1g03080' => 'spa', 'Sp1g03090' => 'spa', 'Sp1g05480' => 'spa', 'Sp2g07860' => 'spa', 'Sp2g08430' => 'spa', 'Sp2g08440' => 'spa', 'Sp2g26200' => 'spa', 'Sp4g13170' => 'spa', 'Sp6g33840' => 'spa', 'SpUn1204_0010' => 'spa', 'TAR365G0908' => 'tar', 'TAR381G1270' => 'tar', 'TAR381G1651' => 'tar', 'TAR625G1131' => 'tar', 'TAR633G0962' => 'tar', 'TAR633G1729' => 'tar', 'TAR633G1864' => 'tar', 'TAR636G0221' => 'tar', 'TAR636G0314' => 'tar', 'TAR636G3202' => 'tar', 'THA.LOC104800805' => 'tha', 'THA.LOC104801096' => 'tha', 'THA.LOC104801555' => 'tha', 'THA.LOC104808491' => 'tha', 'THA.LOC104808595' => 'tha', 'THA.LOC104815985' => 'tha', 'THA.LOC104822250' => 'tha', 'THA.LOC104826071' => 'tha', 'Thecc.01G265200' => 'tca', 'Thecc.01G265300' => 'tca', 'Thecc.01G265700' => 'tca', 'Thecc.03G109100' => 'tca', 'Thecc.04G245900' => 'tca', 'Thecc.04G246000' => 'tca', 'Thhalv10003334m.g' => 'esa', 'Thhalv10005508m.g' => 'esa', 'Thhalv10005643m.g' => 'esa', 'Thhalv10007316m.g' => 'esa', 'Thhalv10009006m.g' => 'esa', 'Thhalv10009309m.g' => 'esa', 'Thhalv10014917m.g' => 'esa', 'Thhalv10014919m.g' => 'esa', 'Thhalv10015393m.g' => 'esa', 'Thhalv10016515m.g' => 'esa', 'Thhalv10029242m.g' => 'esa', 'TPR.G16654' => 'tpr', 'TPR.G20589' => 'tpr', 'TPR.G23029' => 'tpr', 'TPR.G27731' => 'tpr', 'TPR.G28889' => 'tpr', 'TPR.G28899' => 'tpr', 'TPR.G30846' => 'tpr', 'TPR.G5452' => 'tpr', 'TPR.G5713' => 'tpr', 'TPR.G9046' => 'tpr', 'TPR.G9061' => 'tpr', 'TWI09G1075' => 'twi', 'TWI12G0806' => 'twi', 'TWI18G0108' => 'twi', 'TWI53G1361' => 'twi', 'TWI73G0185' => 'twi', 'TWI73G0427' => 'twi', 'unitig_37.g12001' => 'ugi', 'unitig_747.g21660' => 'ugi', 'unitig_748.g7232' => 'ugi', 'unitig_748.g7315' => 'ugi', 'unitig_85.g27262' => 'ugi', 'unitig_92.g28220' => 'ugi', 'vmacro02632' => 'vma', 'vmacro08410' => 'vma', 'vmacro08411' => 'vma', 'vmacro15407' => 'vma', 'VMungo0251G3619' => 'vmu', 'VMungo0720G1204' => 'vmu', 'VMungo0720G1918' => 'vmu', 'VMungo0720G2387' => 'vmu', 'VMungo0720G2961' => 'vmu', 'VMungo1215G2154' => 'vmu', 'VMungo1383G2411' => 'vmu', 'Zm00001eb051130' => 'zma', 'Zm00001eb116830' => 'zma', 'Zm00001eb116850' => 'zma', 'Zm00001eb151740' => 'zma', 'Zm00001eb292360' => 'zma', 'Zm00001eb301640' => 'zma' ) $gf_id = 'HOM05D000856' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000856' ) $data_identifier = 'HOM05D000856' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 13, 'ath' => (int) 10, 'atr' => (int) 1, 'acertr' => (int) 8, 'cqu' => (int) 6, 'bca' => (int) 21, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 11, 'car' => (int) 9, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 8, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 5, 'fan' => (int) 16, 'fve' => (int) 6, 'gma' => (int) 11, 'ghi' => (int) 19, 'gra' => (int) 9, 'vvi' => (int) 7, 'han' => (int) 17, 'cav' => (int) 5, 'hma' => (int) 2, 'vpl' => (int) 2, 'sun' => (int) 7, 'lal' => (int) 9, 'lja' => (int) 5, 'lonja' => (int) 9, 'lsa' => (int) 5, 'mes' => (int) 8, 'mpo' => (int) 3, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 10, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 15, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 9, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 9, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 6, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 5, 'spa' => (int) 10, 'tar' => (int) 10, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 11, 'tpr' => (int) 11, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 4, 'vmu' => (int) 7, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb301640' $species_info = array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ) $local_species = 'oeu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000856', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p00010' => 'bna', 'A03p04160' => 'bna', 'A03p17160' => 'bna', 'A04p23370' => 'bna', 'A05p14860' => 'bna', 'A08p37020' => 'bna', 'A09p08050' => 'bna', 'A09p66800' => 'bna', 'A09p67940' => 'bna', 'A10p02680' => 'bna', 'A10p05320' => 'bna', 'Aa31LG1G20560' => 'aar', 'Aa31LG1G20610' => 'aar', 'Aa31LG1G7810' => 'aar', 'Aa31LG5G3590' => 'aar', 'Aa31LG5G6140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3819' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4683' => 'aag', 'Actinidia04480' => 'ach', 'Actinidia05466' => 'ach', 'Actinidia08445' => 'ach', 'Actinidia21170' => 'ach', 'Actinidia24812' => 'ach', 'Actinidia24951' => 'ach', 'Actinidia40088' => 'ach', 'Ah.02g111660' => 'amhyb', 'Ah.11g048900' => 'amhyb', 'Ah.11g049910' => 'amhyb', 'AL1G13870' => 'aly', 'AL1G13880' => 'aly', 'AL1G16760' => 'aly', 'AL390U10020' => 'aly', 'AL4G25520' => 'aly', 'AL6G19890' => 'aly', 'AL6G19900' => 'aly', 'AL6G19910' => 'aly', 'AL8G40100' => 'aly', 'Aqoxy2G03562' => 'aox', 'Aqoxy5G00316' => 'aox', 'Aqoxy5G00926' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1628KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1H403S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2FU6SJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.882I6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8YRY2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YN1SN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AF70II' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZA8L1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F916KL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHRD8H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KTZ8QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S22EMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8M29T' => 'arhy', 'AT1G04270' => 'ath', 'AT1G04280' => 'ath', 'AT1G06750' => 'ath', 'AT1G33850' => 'ath', 'AT2G30630' => 'ath', 'AT5G09490' => 'ath', 'AT5G09500' => 'ath', 'AT5G09510' => 'ath', 'AT5G43640' => 'ath', 'AT5G63070' => 'ath', 'ATR0605G315' => 'atr', 'Atru.chr11.175' => 'acertr', 'Atru.chr11.653' => 'acertr', 'Atru.chr3.1616' => 'acertr', 'Atru.chr4.2230' => 'acertr', 'Atru.chr4.2232' => 'acertr', 'Atru.chr5.1598' => 'acertr', 'Atru.chr5.1600' => 'acertr', 'Atru.chr5.2188' => 'acertr', 'AUR62008326' => 'cqu', 'AUR62011922' => 'cqu', 'AUR62011924' => 'cqu', 'AUR62021771' => 'cqu', 'AUR62032237' => 'cqu', 'AUR62032240' => 'cqu', 'BcaB01g05572' => 'bca', 'BcaB02g10337' => 'bca', 'BcaB04g19944' => 'bca', 'BcaB05g21548' => 'bca', 'BcaB05g21549' => 'bca', 'BcaB05g23227' => 'bca', 'BcaB06g26256' => 'bca', 'BcaB06g26257' => 'bca', 'BcaB06g28379' => 'bca', 'BcaC02g11159' => 'bca', 'BcaC03g13258' => 'bca', 'BcaC03g13259' => 'bca', 'BcaC05g24456' => 'bca', 'BcaC05g24457' => 'bca', 'BcaC07g36922' => 'bca', 'BcaC07g36923' => 'bca', 'BcaC07g42050' => 'bca', 'BcaC07g42176' => 'bca', 'BcaC07g42195' => 'bca', 'BcaC07g42196' => 'bca', 'BcaNung06674' => 'bca', 'BolC2t06351H' => 'bol', 'BolC2t06352H' => 'bol', 'BolC3t12993H' => 'bol', 'BolC4t23525H' => 'bol', 'BolC4t27475H' => 'bol', 'BolC5t29025H' => 'bol', 'BolC5t29026H' => 'bol', 'BolC8t46898H' => 'bol', 'BolC8t46899H' => 'bol', 'BolC8t52630H' => 'bol', 'BolC8t52765H' => 'bol', 'BolC9t53824H' => 'bol', 'BraA03t09760Z' => 'bra', 'BraA03t10990Z' => 'bra', 'BraA05t20413Z' => 'bra', 'BraA08t35602Z' => 'bra', 'BraA09t36458Z' => 'bra', 'BraA09t42018Z' => 'bra', 'BraA09t42129Z' => 'bra', 'BraA10t42536Z' => 'bra', 'BraA10t42537Z' => 'bra', 'C01p10690' => 'bna', 'C02p03890' => 'bna', 'C02p03900' => 'bna', 'C03p04620' => 'bna', 'C04p19870' => 'bna', 'C04p59670' => 'bna', 'C05p02460' => 'bna', 'C05p02470' => 'bna', 'C08p00980' => 'bna', 'C08p00990' => 'bna', 'C08p51030' => 'bna', 'C08p52360' => 'bna', 'C09p09120' => 'bna', 'CAN.G19.15' => 'can', 'CAN.G251.10' => 'can', 'CAN.G251.9' => 'can', 'CAN.G398.24' => 'can', 'CAN.G410.32' => 'can', 'CAN.G881.2' => 'can', 'CANSAT01G3025' => 'cansat', 'CANSAT78G1211' => 'cansat', 'CANSAT78G1218' => 'cansat', 'CANSAT78G1521' => 'cansat', 'CANSAT78G1670' => 'cansat', 'CARHR003600' => 'chi', 'CARHR003610' => 'chi', 'CARHR006290' => 'chi', 'CARHR006430' => 'chi', 'CARHR124110' => 'chi', 'CARHR203870' => 'chi', 'CARHR203880' => 'chi', 'CARHR203890' => 'chi', 'CARHR276880' => 'chi', 'Carub.0001s0346' => 'cru', 'Carub.0001s0347' => 'cru', 'Carub.0001s0607' => 'cru', 'Carub.0003s2768' => 'cru', 'Carub.0003s2769' => 'cru', 'Carub.0004s1178' => 'cru', 'Carub.0006s0806' => 'cru', 'Carub.0006s0807' => 'cru', 'Carub.0006s0808' => 'cru', 'Carub.0008s0501' => 'cru', 'Carub.0008s2379' => 'cru', 'Ca_08655_v3' => 'car', 'Ca_08922_v3' => 'car', 'Ca_08923_v3' => 'car', 'Ca_09119_v3' => 'car', 'Ca_09703_v3' => 'car', 'Ca_09705_v3' => 'car', 'Ca_09835_v3' => 'car', 'Ca_26403_v3' => 'car', 'Ca_30719_v3' => 'car', 'CBR_g17958' => 'cbr', 'CBR_g40516' => 'cbr', 'Cc00_g05350' => 'ccan', 'Cc01_g18690' => 'ccan', 'Cc03_g04830' => 'ccan', 'Cc03_g04850' => 'ccan', 'CDE02G4469' => 'cde', 'CDE06G0883' => 'cde', 'CDE06G1295' => 'cde', 'CDE06G1390' => 'cde', 'CDE07G0584' => 'cde', 'CDE07G1084' => 'cde', 'CDE08G1259' => 'cde', 'Cfa002341' => 'cfa', 'Cfa024337' => 'cfa', 'Ciclev10004749m.g' => 'ccl', 'Ciclev10006127m.g' => 'ccl', 'Ciclev10019720m.g' => 'ccl', 'Ciclev10022652m.g' => 'ccl', 'CiPaw.01G190400' => 'cil', 'CiPaw.01G190500' => 'cil', 'CiPaw.02G116400' => 'cil', 'CiPaw.02G116500' => 'cil', 'CiPaw.04G183000' => 'cil', 'CiPaw.04G183300' => 'cil', 'ClCG05G004610' => 'cla', 'ClCG05G004620' => 'cla', 'ClCG06G006730' => 'cla', 'ClCG06G006740' => 'cla', 'ClCG11G003690' => 'cla', 'COL.COLO4_08276' => 'col', 'COL.COLO4_08277' => 'col', 'COL.COLO4_15787' => 'col', 'COL.COLO4_15789' => 'col', 'Cpa.g.c44815' => 'cpa', 'Cpa.g.sc52.144' => 'cpa', 'Cpa.g.sc58.46' => 'cpa', 'Cpa.g.sc58.47' => 'cpa', 'Cre08.g360900' => 'cre', 'CsaV3_2G013030' => 'csa', 'CsaV3_2G013050' => 'csa', 'CsaV3_2G015620' => 'csa', 'CsaV3_3G012590' => 'csa', 'CsaV3_3G012600' => 'csa', 'CSS0001641' => 'camsi', 'CSS0008310' => 'camsi', 'CSS0013011' => 'camsi', 'CSS0017147' => 'camsi', 'CSS0022970' => 'camsi', 'CSS0025655' => 'camsi', 'CSS0028665' => 'camsi', 'CSS0029117' => 'camsi', 'CSS0032024' => 'camsi', 'CSS0039681' => 'camsi', 'CSS0046516' => 'camsi', 'CSS0050307' => 'camsi', 'DCAR_005871' => 'dca', 'DCAR_007342' => 'dca', 'DCAR_024228' => 'dca', 'DCAR_027277' => 'dca', 'DCAR_030718' => 'dca', 'Dinv20287' => 'din', 'Dinv22461' => 'din', 'Dinv22464' => 'din', 'Dinv29912' => 'din', 'Dinv29913' => 'din', 'Dinv34580' => 'din', 'Dinv34582' => 'din', 'Dinv44632' => 'din', 'Duzib052G0266' => 'dzi', 'Duzib133G0907' => 'dzi', 'Duzib133G1034' => 'dzi', 'Duzib138G0207' => 'dzi', 'Duzib138G0491' => 'dzi', 'Duzib151G0812' => 'dzi', 'Duzib151G1166' => 'dzi', 'Duzib168G0192' => 'dzi', 'Duzib211G0077' => 'dzi', 'Duzib212G0429' => 'dzi', 'Duzib212G0472' => 'dzi', 'ECA233G2617' => 'eca', 'ECA236G4188' => 'eca', 'ECA240G0936' => 'eca', 'ECA240G1129' => 'eca', 'ECA247G0623' => 'eca', 'EL10Ac5g10451' => 'bvu', 'EL10Ac5g10453' => 'bvu', 'EL10Ac5g10894' => 'bvu', 'Eucgr.H00192' => 'egr', 'Eucgr.H00193' => 'egr', 'Eucgr.H00194' => 'egr', 'Eucgr.J01562' => 'egr', 'Eucgr.K03301' => 'egr', 'FAN02G0632' => 'fan', 'FAN05G5378' => 'fan', 'FAN09G3247' => 'fan', 'FAN12G0435' => 'fan', 'FAN12G2426' => 'fan', 'FAN14G1707' => 'fan', 'FAN14G4725' => 'fan', 'FAN15G2071' => 'fan', 'FAN17G3065' => 'fan', 'FAN19G1376' => 'fan', 'FAN20G0354' => 'fan', 'FAN20G2429' => 'fan', 'FAN20G2658' => 'fan', 'FAN24G2343' => 'fan', 'FAN27G2362' => 'fan', 'FAN28G1765' => 'fan', 'FvH4_1g16020' => 'fve', 'FvH4_2g04890' => 'fve', 'FvH4_2g22270' => 'fve', 'FvH4_4g02630' => 'fve', 'FvH4_4g02640' => 'fve', 'FvH4_6g02650' => 'fve', 'Glyma.02G140600' => 'gma', 'Glyma.03G159900' => 'gma', 'Glyma.05G234800' => 'gma', 'Glyma.07G269600' => 'gma', 'Glyma.08G042300' => 'gma', 'Glyma.10G033500' => 'gma', 'Glyma.10G185200' => 'gma', 'Glyma.17G004300' => 'gma', 'Glyma.19G161900' => 'gma', 'Glyma.20G205100' => 'gma', 'Glyma.20G205200' => 'gma', 'Gohir.A01G139101' => 'ghi', 'Gohir.A02G035600' => 'ghi', 'Gohir.A02G117901' => 'ghi', 'Gohir.A07G210100' => 'ghi', 'Gohir.A07G210200' => 'ghi', 'Gohir.A08G061100' => 'ghi', 'Gohir.A09G223000' => 'ghi', 'Gohir.A09G223100' => 'ghi', 'Gohir.A10G113900' => 'ghi', 'Gohir.A10G114000' => 'ghi', 'Gohir.D02G042300' => 'ghi', 'Gohir.D07G216100' => 'ghi', 'Gohir.D07G216200' => 'ghi', 'Gohir.D08G070400' => 'ghi', 'Gohir.D09G225000' => 'ghi', 'Gohir.D09G225100' => 'ghi', 'Gohir.D10G152300' => 'ghi', 'Gohir.D10G153200' => 'ghi', 'Gohir.D11G133701' => 'ghi', 'Gorai.004G074100' => 'gra', 'Gorai.005G046800' => 'gra', 'Gorai.006G246500' => 'gra', 'Gorai.006G246600' => 'gra', 'Gorai.007G142900' => 'gra', 'Gorai.011G171000' => 'gra', 'Gorai.011G171100' => 'gra', 'Gorai.013G104300' => 'gra', 'Gorai.013G104400' => 'gra', 'GSVIVG01000754001' => 'vvi', 'GSVIVG01000756001' => 'vvi', 'GSVIVG01010903001' => 'vvi', 'GSVIVG01017623001' => 'vvi', 'GSVIVG01018113001' => 'vvi', 'GSVIVG01018116001' => 'vvi', 'GSVIVG01018118001' => 'vvi', 'HanXRQChr03g0076211' => 'han', 'HanXRQChr03g0092431' => 'han', 'HanXRQChr03g0092441' => 'han', 'HanXRQChr03g0092591' => 'han', 'HanXRQChr03g0092671' => 'han', 'HanXRQChr03g0092681' => 'han', 'HanXRQChr03g0092691' => 'han', 'HanXRQChr03g0092701' => 'han', 'HanXRQChr03g0092721' => 'han', 'HanXRQChr03g0092731' => 'han', 'HanXRQChr04g0113681' => 'han', 'HanXRQChr10g0281371' => 'han', 'HanXRQChr11g0337141' => 'han', 'HanXRQChr13g0424521' => 'han', 'HanXRQChr13g0424531' => 'han', 'HanXRQChr13g0424541' => 'han', 'HanXRQChr16g0498221' => 'han', 'Haze_04377' => 'cav', 'Haze_11298' => 'cav', 'Haze_24547' => 'cav', 'Haze_24550' => 'cav', 'Haze_26587' => 'cav', 'Hma1.2p1_0650F.1_g195410' => 'hma', 'Hma1.2p1_0893F.1_g233470' => 'hma', 'HPP92_006508' => 'vpl', 'HPP92_024780' => 'vpl', 'Hund02688' => 'sun', 'Hund09380' => 'sun', 'Hund09381' => 'sun', 'Hund09832' => 'sun', 'Hund09833' => 'sun', 'Hund11351' => 'sun', 'Hund11513' => 'sun', 'Lalb_Chr06g0162591' => 'lal', 'Lalb_Chr06g0162601' => 'lal', 'Lalb_Chr06g0169321' => 'lal', 'Lalb_Chr09g0330951' => 'lal', 'Lalb_Chr16g0387631' => 'lal', 'Lalb_Chr21g0306241' => 'lal', 'Lalb_Chr25g0290051' => 'lal', 'Lalb_Chr25g0290061' => 'lal', 'Lalb_Chr25g0290071' => 'lal', 'Lj1g0003876' => 'lja', 'Lj1P1207T36' => 'lonja', 'Lj2C1156G12' => 'lonja', 'Lj3A793G39' => 'lonja', 'Lj3C580G2' => 'lonja', 'Lj3C780G2' => 'lonja', 'Lj3C780T4' => 'lonja', 'Lj3C793G9' => 'lonja', 'Lj4g0012960' => 'lja', 'Lj5g0021252' => 'lja', 'Lj5g0021484' => 'lja', 'Lj5g0024528' => 'lja', 'Lj6A399T12' => 'lonja', 'Lj6A656G65' => 'lonja', 'Lsat_1_v5_gn_3_125500' => 'lsa', 'Lsat_1_v5_gn_3_125540' => 'lsa', 'Lsat_1_v5_gn_5_72701' => 'lsa', 'Lsat_1_v5_gn_8_91560' => 'lsa', 'Lsat_1_v5_gn_9_9640' => 'lsa', 'Manes.01G200600' => 'mes', 'Manes.01G200700' => 'mes', 'Manes.03G168900' => 'mes', 'Manes.03G169000' => 'mes', 'Manes.05G085801' => 'mes', 'Manes.05G086200' => 'mes', 'Manes.15G036700' => 'mes', 'Manes.15G036900' => 'mes', 'Mapoly0004s0172' => 'mpo', 'Mapoly0023s0001' => 'mpo', 'Mapoly0142s0012' => 'mpo', 'MBI01_g32854_MAGBIO' => 'mbi', 'MBI11_g24427_MAGBIO' => 'mbi', 'MBI11_g47319_MAGBIO' => 'mbi', 'MCO01G433' => 'mco', 'MD00G1187800' => 'mdo', 'MD04G1226500' => 'mdo', 'MD05G1203900' => 'mdo', 'MD10G1191100' => 'mdo', 'MD12G1243500' => 'mdo', 'MD13G1207000' => 'mdo', 'MD13G1207100' => 'mdo', 'MD16G1208600' => 'mdo', 'Medtr1g050352' => 'mtr', 'Medtr1g070385' => 'mtr', 'Medtr1g070450' => 'mtr', 'Medtr1g075200' => 'mtr', 'Medtr1g075250' => 'mtr', 'Medtr1g075260' => 'mtr', 'Medtr1g475250' => 'mtr', 'Medtr4g075450' => 'mtr', 'Medtr7g096300' => 'mtr', 'Medtr8g105110' => 'mtr', 'MELO3C006470.2' => 'cme', 'MELO3C006471.2' => 'cme', 'MELO3C020772.2' => 'cme', 'MELO3C026780.2' => 'cme', 'MELO3C026781.2' => 'cme', 'Migut.D00390' => 'egut', 'Migut.G00435' => 'egut', 'Migut.G00436' => 'egut', 'Migut.G00718' => 'egut', 'MSTRG.21891' => 'ama', 'MSTRG.26910' => 'ama', 'MSTRG.4099' => 'ama', 'MSTRG.9925' => 'ama', 'Nitab4.5_0000165g0010' => 'nta', 'Nitab4.5_0000209g0180' => 'nta', 'Nitab4.5_0000244g0440' => 'nta', 'Nitab4.5_0000525g0220' => 'nta', 'Nitab4.5_0001597g0020' => 'nta', 'Nitab4.5_0001878g0040' => 'nta', 'Nitab4.5_0001878g0060' => 'nta', 'Nitab4.5_0002838g0100' => 'nta', 'Nitab4.5_0002838g0120' => 'nta', 'Nitab4.5_0004798g0030' => 'nta', 'Nitab4.5_0005420g0010' => 'nta', 'Nitab4.5_0005507g0010' => 'nta', 'Nitab4.5_0005574g0020' => 'nta', 'Nitab4.5_0005838g0010' => 'nta', 'Nitab4.5_0010580g0020' => 'nta', 'Nn1g02599' => 'nnu', 'Nn1g02608' => 'nnu', 'Nn3g17742' => 'nnu', 'Nn3g19534' => 'nnu', 'Nn3g19535' => 'nnu', 'Oeu008790.1' => 'oeu', 'Oeu008792.1' => 'oeu', 'Oeu032590.1' => 'oeu', 'Oeu035349.1' => 'oeu', 'Oeu049791.1' => 'oeu', 'Os01g0774500' => 'osa', 'Os03g0628800' => 'osa', 'Os03g0798600' => 'osa', 'Os05g0508800' => 'osa', 'Peaxi162Scf00036g02018' => 'pax', 'Peaxi162Scf00578g00032' => 'pax', 'Peaxi162Scf00578g00317' => 'pax', 'Peaxi162Scf00785g00114' => 'pax', 'Peaxi162Scf00813g00119' => 'pax', 'Peaxi162Scf00906g00227' => 'pax', 'PGR004G0875' => 'pgr', 'PGR004G2424' => 'pgr', 'PGR031G1239' => 'pgr', 'PGR031G2474' => 'pgr', 'PGR044G0423' => 'pgr', 'PGSC0003DMG400001128' => 'stu', 'PGSC0003DMG400007336' => 'stu', 'PGSC0003DMG400016318' => 'stu', 'PGSC0003DMG400016319' => 'stu', 'PGSC0003DMG400018074' => 'stu', 'Phvul.001G157700' => 'pvu', 'Phvul.002G148550' => 'pvu', 'Phvul.002G320200' => 'pvu', 'Phvul.003G089200' => 'pvu', 'Phvul.007G126000' => 'pvu', 'Phvul.007G126100' => 'pvu', 'Phvul.007G178000' => 'pvu', 'Phvul.007G178200' => 'pvu', 'Potri.002G043000' => 'ptr', 'Potri.002G043200' => 'ptr', 'Potri.003G123750' => 'ptr', 'Potri.005G055401' => 'ptr', 'Potri.005G219700' => 'ptr', 'Potri.005G220000' => 'ptr', 'Potri.008G161901' => 'ptr', 'Potri.008G162000' => 'ptr', 'Potri.008G162400' => 'ptr', 'Potri.010G076900' => 'ptr', 'Pp3c12_9180' => 'ppa', 'Pp3c13_19770' => 'ppa', 'Pp3c14_22950' => 'ppa', 'Pp3c16_12160' => 'ppa', 'Pp3c27_7820' => 'ppa', 'Pp3c2_3490' => 'ppa', 'Pp3c3_23700' => 'ppa', 'Pp3c3_36520' => 'ppa', 'Pp3c4_15250' => 'ppa', 'PRCOL_00007002' => 'pco', 'Prupe.1G030600' => 'ppe', 'Prupe.1G030700' => 'ppe', 'Prupe.6G345200' => 'ppe', 'Prupe.8G230300' => 'ppe', 'Prupe.8G230500' => 'ppe', 'Psat3g059600' => 'psa', 'Psat5g200920' => 'psa', 'Psat6g056440' => 'psa', 'Psat6g057360' => 'psa', 'Psat6g134120' => 'psa', 'Psat6g134160' => 'psa', 'Psat7g008640' => 'psa', 'Psat7g185240' => 'psa', 'PSO017G1330' => 'pso', 'PSO063G6097' => 'pso', 'PSO170G0835' => 'pso', 'PSO170G2499' => 'pso', 'PSO210G5058' => 'pso', 'PSO210G6154' => 'pso', 'PSO585G0031' => 'pso', 'PSO832G0264' => 'pso', 'PSO832G4288' => 'pso', 'QL03p027355' => 'qlo', 'QL03p027430' => 'qlo', 'QL04p081380' => 'qlo', 'QL06p015642' => 'qlo', 'QL06p015650' => 'qlo', 'QL06p015686' => 'qlo', 'QL12p042927' => 'qlo', 'QL93p1863_0035' => 'qlo', 'RcHm_v2.0_Chr3g0450581' => 'rch', 'RcHm_v2.0_Chr4g0390371' => 'rch', 'RcHm_v2.0_Chr4g0390381' => 'rch', 'RcHm_v2.0_Chr4g0390491' => 'rch', 'RcHm_v2.0_Chr4g0390501' => 'rch', 'RcHm_v2.0_Chr6g0289231' => 'rch', 'Rhsim04G0190400' => 'rsi', 'Rhsim04G0190500' => 'rsi', 'Rhsim04G0190600' => 'rsi', 'Rhsim13G0031400' => 'rsi', 'Rhsim13G0165600' => 'rsi', 'RhsimUnG0114600' => 'rsi', 'RhsimUnG0114700' => 'rsi', 'Sabra02G0034800' => 'sbr', 'Sabra02G0035100' => 'sbr', 'Sabra05G0168600' => 'sbr', 'Sabra05G0168800' => 'sbr', 'Sabra08G0123700' => 'sbr', 'Sabra10G0031900' => 'sbr', 'Sabra13G0039000' => 'sbr', 'SalBow2G0782' => 'sbo', 'SalBow2G1403' => 'sbo', 'SalBow4G0074' => 'sbo', 'SalBow4G2635' => 'sbo', 'SalBow5G3010' => 'sbo', 'Sc05g0000870' => 'sci', 'Sc05g0000890' => 'sci', 'Sc13g0005000' => 'sci', 'Sc13g0005030' => 'sci', 'Sc19g0003790' => 'sci', 'Sc19g0003800' => 'sci', 'Sed0003467' => 'sed', 'Sed0009355' => 'sed', 'Sed0009894' => 'sed', 'Sed0011972' => 'sed', 'Sed0021483' => 'sed', 'Sed0021750' => 'sed', 'Sed0026279' => 'sed', 'SEGI_05312' => 'sgi', 'SEGI_10112' => 'sgi', 'SEGI_15835' => 'sgi', 'SEGI_30386' => 'sgi', 'SEGI_34122' => 'sgi', 'SEGI_35063' => 'sgi', 'SGA_v2.0_scaffold101G29794' => 'sas', 'SGA_v2.0_scaffold1G00573' => 'sas', 'SGA_v2.0_scaffold79G25637' => 'sas', 'SGA_v2.0_scaffold88G27283' => 'sas', 'SGA_v2.0_scaffold88G27285' => 'sas', 'SGA_v2.0_scaffold88G27331' => 'sas', 'SHI09937' => 'shi', 'SMO119G0302' => 'smo', 'SMO137G0231' => 'smo', 'SMO367G1151' => 'smo', 'Solyc02g082000.3' => 'sly', 'Solyc06g031670.3' => 'sly', 'Solyc06g053810.3' => 'sly', 'Solyc07g025457.1' => 'sly', 'Solyc08g059740.1' => 'sly', 'Solyc08g059750.3' => 'sly', 'Solyc09g083370.3' => 'sly', 'Solyc12g038950.3' => 'sly', 'Sopen02g026630' => 'spe', 'Sopen06g018930' => 'spe', 'Sopen06g018940' => 'spe', 'Sopen08g009460' => 'spe', 'Sopen09g032290' => 'spe', 'Sp1g03080' => 'spa', 'Sp1g03090' => 'spa', 'Sp1g05480' => 'spa', 'Sp2g07860' => 'spa', 'Sp2g08430' => 'spa', 'Sp2g08440' => 'spa', 'Sp2g26200' => 'spa', 'Sp4g13170' => 'spa', 'Sp6g33840' => 'spa', 'SpUn1204_0010' => 'spa', 'TAR365G0908' => 'tar', 'TAR381G1270' => 'tar', 'TAR381G1651' => 'tar', 'TAR625G1131' => 'tar', 'TAR633G0962' => 'tar', 'TAR633G1729' => 'tar', 'TAR633G1864' => 'tar', 'TAR636G0221' => 'tar', 'TAR636G0314' => 'tar', 'TAR636G3202' => 'tar', 'THA.LOC104800805' => 'tha', 'THA.LOC104801096' => 'tha', 'THA.LOC104801555' => 'tha', 'THA.LOC104808491' => 'tha', 'THA.LOC104808595' => 'tha', 'THA.LOC104815985' => 'tha', 'THA.LOC104822250' => 'tha', 'THA.LOC104826071' => 'tha', 'Thecc.01G265200' => 'tca', 'Thecc.01G265300' => 'tca', 'Thecc.01G265700' => 'tca', 'Thecc.03G109100' => 'tca', 'Thecc.04G245900' => 'tca', 'Thecc.04G246000' => 'tca', 'Thhalv10003334m.g' => 'esa', 'Thhalv10005508m.g' => 'esa', 'Thhalv10005643m.g' => 'esa', 'Thhalv10007316m.g' => 'esa', 'Thhalv10009006m.g' => 'esa', 'Thhalv10009309m.g' => 'esa', 'Thhalv10014917m.g' => 'esa', 'Thhalv10014919m.g' => 'esa', 'Thhalv10015393m.g' => 'esa', 'Thhalv10016515m.g' => 'esa', 'Thhalv10029242m.g' => 'esa', 'TPR.G16654' => 'tpr', 'TPR.G20589' => 'tpr', 'TPR.G23029' => 'tpr', 'TPR.G27731' => 'tpr', 'TPR.G28889' => 'tpr', 'TPR.G28899' => 'tpr', 'TPR.G30846' => 'tpr', 'TPR.G5452' => 'tpr', 'TPR.G5713' => 'tpr', 'TPR.G9046' => 'tpr', 'TPR.G9061' => 'tpr', 'TWI09G1075' => 'twi', 'TWI12G0806' => 'twi', 'TWI18G0108' => 'twi', 'TWI53G1361' => 'twi', 'TWI73G0185' => 'twi', 'TWI73G0427' => 'twi', 'unitig_37.g12001' => 'ugi', 'unitig_747.g21660' => 'ugi', 'unitig_748.g7232' => 'ugi', 'unitig_748.g7315' => 'ugi', 'unitig_85.g27262' => 'ugi', 'unitig_92.g28220' => 'ugi', 'vmacro02632' => 'vma', 'vmacro08410' => 'vma', 'vmacro08411' => 'vma', 'vmacro15407' => 'vma', 'VMungo0251G3619' => 'vmu', 'VMungo0720G1204' => 'vmu', 'VMungo0720G1918' => 'vmu', 'VMungo0720G2387' => 'vmu', 'VMungo0720G2961' => 'vmu', 'VMungo1215G2154' => 'vmu', 'VMungo1383G2411' => 'vmu', 'Zm00001eb051130' => 'zma', 'Zm00001eb116830' => 'zma', 'Zm00001eb116850' => 'zma', 'Zm00001eb151740' => 'zma', 'Zm00001eb292360' => 'zma', 'Zm00001eb301640' => 'zma' ), 'gf_id' => 'HOM05D000856', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000856' ), 'data_identifier' => 'HOM05D000856', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000856', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p00010' => 'bna', 'A03p04160' => 'bna', 'A03p17160' => 'bna', 'A04p23370' => 'bna', 'A05p14860' => 'bna', 'A08p37020' => 'bna', 'A09p08050' => 'bna', 'A09p66800' => 'bna', 'A09p67940' => 'bna', 'A10p02680' => 'bna', 'A10p05320' => 'bna', 'Aa31LG1G20560' => 'aar', 'Aa31LG1G20610' => 'aar', 'Aa31LG1G7810' => 'aar', 'Aa31LG5G3590' => 'aar', 'Aa31LG5G6140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3819' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4683' => 'aag', 'Actinidia04480' => 'ach', 'Actinidia05466' => 'ach', 'Actinidia08445' => 'ach', 'Actinidia21170' => 'ach', 'Actinidia24812' => 'ach', 'Actinidia24951' => 'ach', 'Actinidia40088' => 'ach', 'Ah.02g111660' => 'amhyb', 'Ah.11g048900' => 'amhyb', 'Ah.11g049910' => 'amhyb', 'AL1G13870' => 'aly', 'AL1G13880' => 'aly', 'AL1G16760' => 'aly', 'AL390U10020' => 'aly', 'AL4G25520' => 'aly', 'AL6G19890' => 'aly', 'AL6G19900' => 'aly', 'AL6G19910' => 'aly', 'AL8G40100' => 'aly', 'Aqoxy2G03562' => 'aox', 'Aqoxy5G00316' => 'aox', 'Aqoxy5G00926' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1628KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1H403S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2FU6SJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.882I6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8YRY2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YN1SN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AF70II' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZA8L1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F916KL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHRD8H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KTZ8QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S22EMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8M29T' => 'arhy', 'AT1G04270' => 'ath', 'AT1G04280' => 'ath', 'AT1G06750' => 'ath', 'AT1G33850' => 'ath', 'AT2G30630' => 'ath', 'AT5G09490' => 'ath', 'AT5G09500' => 'ath', 'AT5G09510' => 'ath', 'AT5G43640' => 'ath', 'AT5G63070' => 'ath', 'ATR0605G315' => 'atr', 'Atru.chr11.175' => 'acertr', 'Atru.chr11.653' => 'acertr', 'Atru.chr3.1616' => 'acertr', 'Atru.chr4.2230' => 'acertr', 'Atru.chr4.2232' => 'acertr', 'Atru.chr5.1598' => 'acertr', 'Atru.chr5.1600' => 'acertr', 'Atru.chr5.2188' => 'acertr', 'AUR62008326' => 'cqu', 'AUR62011922' => 'cqu', 'AUR62011924' => 'cqu', 'AUR62021771' => 'cqu', 'AUR62032237' => 'cqu', 'AUR62032240' => 'cqu', 'BcaB01g05572' => 'bca', 'BcaB02g10337' => 'bca', 'BcaB04g19944' => 'bca', 'BcaB05g21548' => 'bca', 'BcaB05g21549' => 'bca', 'BcaB05g23227' => 'bca', 'BcaB06g26256' => 'bca', 'BcaB06g26257' => 'bca', 'BcaB06g28379' => 'bca', 'BcaC02g11159' => 'bca', 'BcaC03g13258' => 'bca', 'BcaC03g13259' => 'bca', 'BcaC05g24456' => 'bca', 'BcaC05g24457' => 'bca', 'BcaC07g36922' => 'bca', 'BcaC07g36923' => 'bca', 'BcaC07g42050' => 'bca', 'BcaC07g42176' => 'bca', 'BcaC07g42195' => 'bca', 'BcaC07g42196' => 'bca', 'BcaNung06674' => 'bca', 'BolC2t06351H' => 'bol', 'BolC2t06352H' => 'bol', 'BolC3t12993H' => 'bol', 'BolC4t23525H' => 'bol', 'BolC4t27475H' => 'bol', 'BolC5t29025H' => 'bol', 'BolC5t29026H' => 'bol', 'BolC8t46898H' => 'bol', 'BolC8t46899H' => 'bol', 'BolC8t52630H' => 'bol', 'BolC8t52765H' => 'bol', 'BolC9t53824H' => 'bol', 'BraA03t09760Z' => 'bra', 'BraA03t10990Z' => 'bra', 'BraA05t20413Z' => 'bra', 'BraA08t35602Z' => 'bra', 'BraA09t36458Z' => 'bra', 'BraA09t42018Z' => 'bra', 'BraA09t42129Z' => 'bra', 'BraA10t42536Z' => 'bra', 'BraA10t42537Z' => 'bra', 'C01p10690' => 'bna', 'C02p03890' => 'bna', 'C02p03900' => 'bna', 'C03p04620' => 'bna', 'C04p19870' => 'bna', 'C04p59670' => 'bna', 'C05p02460' => 'bna', 'C05p02470' => 'bna', 'C08p00980' => 'bna', 'C08p00990' => 'bna', 'C08p51030' => 'bna', 'C08p52360' => 'bna', 'C09p09120' => 'bna', 'CAN.G19.15' => 'can', 'CAN.G251.10' => 'can', 'CAN.G251.9' => 'can', 'CAN.G398.24' => 'can', 'CAN.G410.32' => 'can', 'CAN.G881.2' => 'can', 'CANSAT01G3025' => 'cansat', 'CANSAT78G1211' => 'cansat', 'CANSAT78G1218' => 'cansat', 'CANSAT78G1521' => 'cansat', 'CANSAT78G1670' => 'cansat', 'CARHR003600' => 'chi', 'CARHR003610' => 'chi', 'CARHR006290' => 'chi', 'CARHR006430' => 'chi', 'CARHR124110' => 'chi', 'CARHR203870' => 'chi', 'CARHR203880' => 'chi', 'CARHR203890' => 'chi', 'CARHR276880' => 'chi', 'Carub.0001s0346' => 'cru', 'Carub.0001s0347' => 'cru', 'Carub.0001s0607' => 'cru', 'Carub.0003s2768' => 'cru', 'Carub.0003s2769' => 'cru', 'Carub.0004s1178' => 'cru', 'Carub.0006s0806' => 'cru', 'Carub.0006s0807' => 'cru', 'Carub.0006s0808' => 'cru', 'Carub.0008s0501' => 'cru', 'Carub.0008s2379' => 'cru', 'Ca_08655_v3' => 'car', 'Ca_08922_v3' => 'car', 'Ca_08923_v3' => 'car', 'Ca_09119_v3' => 'car', 'Ca_09703_v3' => 'car', 'Ca_09705_v3' => 'car', 'Ca_09835_v3' => 'car', 'Ca_26403_v3' => 'car', 'Ca_30719_v3' => 'car', 'CBR_g17958' => 'cbr', 'CBR_g40516' => 'cbr', 'Cc00_g05350' => 'ccan', 'Cc01_g18690' => 'ccan', 'Cc03_g04830' => 'ccan', 'Cc03_g04850' => 'ccan', 'CDE02G4469' => 'cde', 'CDE06G0883' => 'cde', 'CDE06G1295' => 'cde', 'CDE06G1390' => 'cde', 'CDE07G0584' => 'cde', 'CDE07G1084' => 'cde', 'CDE08G1259' => 'cde', 'Cfa002341' => 'cfa', 'Cfa024337' => 'cfa', 'Ciclev10004749m.g' => 'ccl', 'Ciclev10006127m.g' => 'ccl', 'Ciclev10019720m.g' => 'ccl', 'Ciclev10022652m.g' => 'ccl', 'CiPaw.01G190400' => 'cil', 'CiPaw.01G190500' => 'cil', 'CiPaw.02G116400' => 'cil', 'CiPaw.02G116500' => 'cil', 'CiPaw.04G183000' => 'cil', 'CiPaw.04G183300' => 'cil', 'ClCG05G004610' => 'cla', 'ClCG05G004620' => 'cla', 'ClCG06G006730' => 'cla', 'ClCG06G006740' => 'cla', 'ClCG11G003690' => 'cla', 'COL.COLO4_08276' => 'col', 'COL.COLO4_08277' => 'col', 'COL.COLO4_15787' => 'col', 'COL.COLO4_15789' => 'col', 'Cpa.g.c44815' => 'cpa', 'Cpa.g.sc52.144' => 'cpa', 'Cpa.g.sc58.46' => 'cpa', 'Cpa.g.sc58.47' => 'cpa', 'Cre08.g360900' => 'cre', 'CsaV3_2G013030' => 'csa', 'CsaV3_2G013050' => 'csa', 'CsaV3_2G015620' => 'csa', 'CsaV3_3G012590' => 'csa', 'CsaV3_3G012600' => 'csa', 'CSS0001641' => 'camsi', 'CSS0008310' => 'camsi', 'CSS0013011' => 'camsi', 'CSS0017147' => 'camsi', 'CSS0022970' => 'camsi', 'CSS0025655' => 'camsi', 'CSS0028665' => 'camsi', 'CSS0029117' => 'camsi', 'CSS0032024' => 'camsi', 'CSS0039681' => 'camsi', 'CSS0046516' => 'camsi', 'CSS0050307' => 'camsi', 'DCAR_005871' => 'dca', 'DCAR_007342' => 'dca', 'DCAR_024228' => 'dca', 'DCAR_027277' => 'dca', 'DCAR_030718' => 'dca', 'Dinv20287' => 'din', 'Dinv22461' => 'din', 'Dinv22464' => 'din', 'Dinv29912' => 'din', 'Dinv29913' => 'din', 'Dinv34580' => 'din', 'Dinv34582' => 'din', 'Dinv44632' => 'din', 'Duzib052G0266' => 'dzi', 'Duzib133G0907' => 'dzi', 'Duzib133G1034' => 'dzi', 'Duzib138G0207' => 'dzi', 'Duzib138G0491' => 'dzi', 'Duzib151G0812' => 'dzi', 'Duzib151G1166' => 'dzi', 'Duzib168G0192' => 'dzi', 'Duzib211G0077' => 'dzi', 'Duzib212G0429' => 'dzi', 'Duzib212G0472' => 'dzi', 'ECA233G2617' => 'eca', 'ECA236G4188' => 'eca', 'ECA240G0936' => 'eca', 'ECA240G1129' => 'eca', 'ECA247G0623' => 'eca', 'EL10Ac5g10451' => 'bvu', 'EL10Ac5g10453' => 'bvu', 'EL10Ac5g10894' => 'bvu', 'Eucgr.H00192' => 'egr', 'Eucgr.H00193' => 'egr', 'Eucgr.H00194' => 'egr', 'Eucgr.J01562' => 'egr', 'Eucgr.K03301' => 'egr', 'FAN02G0632' => 'fan', 'FAN05G5378' => 'fan', 'FAN09G3247' => 'fan', 'FAN12G0435' => 'fan', 'FAN12G2426' => 'fan', 'FAN14G1707' => 'fan', 'FAN14G4725' => 'fan', 'FAN15G2071' => 'fan', 'FAN17G3065' => 'fan', 'FAN19G1376' => 'fan', 'FAN20G0354' => 'fan', 'FAN20G2429' => 'fan', 'FAN20G2658' => 'fan', 'FAN24G2343' => 'fan', 'FAN27G2362' => 'fan', 'FAN28G1765' => 'fan', 'FvH4_1g16020' => 'fve', 'FvH4_2g04890' => 'fve', 'FvH4_2g22270' => 'fve', 'FvH4_4g02630' => 'fve', 'FvH4_4g02640' => 'fve', 'FvH4_6g02650' => 'fve', 'Glyma.02G140600' => 'gma', 'Glyma.03G159900' => 'gma', 'Glyma.05G234800' => 'gma', 'Glyma.07G269600' => 'gma', 'Glyma.08G042300' => 'gma', 'Glyma.10G033500' => 'gma', 'Glyma.10G185200' => 'gma', 'Glyma.17G004300' => 'gma', 'Glyma.19G161900' => 'gma', 'Glyma.20G205100' => 'gma', 'Glyma.20G205200' => 'gma', 'Gohir.A01G139101' => 'ghi', 'Gohir.A02G035600' => 'ghi', 'Gohir.A02G117901' => 'ghi', 'Gohir.A07G210100' => 'ghi', 'Gohir.A07G210200' => 'ghi', 'Gohir.A08G061100' => 'ghi', 'Gohir.A09G223000' => 'ghi', 'Gohir.A09G223100' => 'ghi', 'Gohir.A10G113900' => 'ghi', 'Gohir.A10G114000' => 'ghi', 'Gohir.D02G042300' => 'ghi', 'Gohir.D07G216100' => 'ghi', 'Gohir.D07G216200' => 'ghi', 'Gohir.D08G070400' => 'ghi', 'Gohir.D09G225000' => 'ghi', 'Gohir.D09G225100' => 'ghi', 'Gohir.D10G152300' => 'ghi', 'Gohir.D10G153200' => 'ghi', 'Gohir.D11G133701' => 'ghi', 'Gorai.004G074100' => 'gra', 'Gorai.005G046800' => 'gra', 'Gorai.006G246500' => 'gra', 'Gorai.006G246600' => 'gra', 'Gorai.007G142900' => 'gra', 'Gorai.011G171000' => 'gra', 'Gorai.011G171100' => 'gra', 'Gorai.013G104300' => 'gra', 'Gorai.013G104400' => 'gra', 'GSVIVG01000754001' => 'vvi', 'GSVIVG01000756001' => 'vvi', 'GSVIVG01010903001' => 'vvi', 'GSVIVG01017623001' => 'vvi', 'GSVIVG01018113001' => 'vvi', 'GSVIVG01018116001' => 'vvi', 'GSVIVG01018118001' => 'vvi', 'HanXRQChr03g0076211' => 'han', 'HanXRQChr03g0092431' => 'han', 'HanXRQChr03g0092441' => 'han', 'HanXRQChr03g0092591' => 'han', 'HanXRQChr03g0092671' => 'han', 'HanXRQChr03g0092681' => 'han', 'HanXRQChr03g0092691' => 'han', 'HanXRQChr03g0092701' => 'han', 'HanXRQChr03g0092721' => 'han', 'HanXRQChr03g0092731' => 'han', 'HanXRQChr04g0113681' => 'han', 'HanXRQChr10g0281371' => 'han', 'HanXRQChr11g0337141' => 'han', 'HanXRQChr13g0424521' => 'han', 'HanXRQChr13g0424531' => 'han', 'HanXRQChr13g0424541' => 'han', 'HanXRQChr16g0498221' => 'han', 'Haze_04377' => 'cav', 'Haze_11298' => 'cav', 'Haze_24547' => 'cav', 'Haze_24550' => 'cav', 'Haze_26587' => 'cav', 'Hma1.2p1_0650F.1_g195410' => 'hma', 'Hma1.2p1_0893F.1_g233470' => 'hma', 'HPP92_006508' => 'vpl', 'HPP92_024780' => 'vpl', 'Hund02688' => 'sun', 'Hund09380' => 'sun', 'Hund09381' => 'sun', 'Hund09832' => 'sun', 'Hund09833' => 'sun', 'Hund11351' => 'sun', 'Hund11513' => 'sun', 'Lalb_Chr06g0162591' => 'lal', 'Lalb_Chr06g0162601' => 'lal', 'Lalb_Chr06g0169321' => 'lal', 'Lalb_Chr09g0330951' => 'lal', 'Lalb_Chr16g0387631' => 'lal', 'Lalb_Chr21g0306241' => 'lal', 'Lalb_Chr25g0290051' => 'lal', 'Lalb_Chr25g0290061' => 'lal', 'Lalb_Chr25g0290071' => 'lal', 'Lj1g0003876' => 'lja', 'Lj1P1207T36' => 'lonja', 'Lj2C1156G12' => 'lonja', 'Lj3A793G39' => 'lonja', 'Lj3C580G2' => 'lonja', 'Lj3C780G2' => 'lonja', 'Lj3C780T4' => 'lonja', 'Lj3C793G9' => 'lonja', 'Lj4g0012960' => 'lja', 'Lj5g0021252' => 'lja', 'Lj5g0021484' => 'lja', 'Lj5g0024528' => 'lja', 'Lj6A399T12' => 'lonja', 'Lj6A656G65' => 'lonja', 'Lsat_1_v5_gn_3_125500' => 'lsa', 'Lsat_1_v5_gn_3_125540' => 'lsa', 'Lsat_1_v5_gn_5_72701' => 'lsa', 'Lsat_1_v5_gn_8_91560' => 'lsa', 'Lsat_1_v5_gn_9_9640' => 'lsa', 'Manes.01G200600' => 'mes', 'Manes.01G200700' => 'mes', 'Manes.03G168900' => 'mes', 'Manes.03G169000' => 'mes', 'Manes.05G085801' => 'mes', 'Manes.05G086200' => 'mes', 'Manes.15G036700' => 'mes', 'Manes.15G036900' => 'mes', 'Mapoly0004s0172' => 'mpo', 'Mapoly0023s0001' => 'mpo', 'Mapoly0142s0012' => 'mpo', 'MBI01_g32854_MAGBIO' => 'mbi', 'MBI11_g24427_MAGBIO' => 'mbi', 'MBI11_g47319_MAGBIO' => 'mbi', 'MCO01G433' => 'mco', 'MD00G1187800' => 'mdo', 'MD04G1226500' => 'mdo', 'MD05G1203900' => 'mdo', 'MD10G1191100' => 'mdo', 'MD12G1243500' => 'mdo', 'MD13G1207000' => 'mdo', 'MD13G1207100' => 'mdo', 'MD16G1208600' => 'mdo', 'Medtr1g050352' => 'mtr', 'Medtr1g070385' => 'mtr', 'Medtr1g070450' => 'mtr', 'Medtr1g075200' => 'mtr', 'Medtr1g075250' => 'mtr', 'Medtr1g075260' => 'mtr', 'Medtr1g475250' => 'mtr', 'Medtr4g075450' => 'mtr', 'Medtr7g096300' => 'mtr', 'Medtr8g105110' => 'mtr', 'MELO3C006470.2' => 'cme', 'MELO3C006471.2' => 'cme', 'MELO3C020772.2' => 'cme', 'MELO3C026780.2' => 'cme', 'MELO3C026781.2' => 'cme', 'Migut.D00390' => 'egut', 'Migut.G00435' => 'egut', 'Migut.G00436' => 'egut', 'Migut.G00718' => 'egut', 'MSTRG.21891' => 'ama', 'MSTRG.26910' => 'ama', 'MSTRG.4099' => 'ama', 'MSTRG.9925' => 'ama', 'Nitab4.5_0000165g0010' => 'nta', 'Nitab4.5_0000209g0180' => 'nta', 'Nitab4.5_0000244g0440' => 'nta', 'Nitab4.5_0000525g0220' => 'nta', 'Nitab4.5_0001597g0020' => 'nta', 'Nitab4.5_0001878g0040' => 'nta', 'Nitab4.5_0001878g0060' => 'nta', 'Nitab4.5_0002838g0100' => 'nta', 'Nitab4.5_0002838g0120' => 'nta', 'Nitab4.5_0004798g0030' => 'nta', 'Nitab4.5_0005420g0010' => 'nta', 'Nitab4.5_0005507g0010' => 'nta', 'Nitab4.5_0005574g0020' => 'nta', 'Nitab4.5_0005838g0010' => 'nta', 'Nitab4.5_0010580g0020' => 'nta', 'Nn1g02599' => 'nnu', 'Nn1g02608' => 'nnu', 'Nn3g17742' => 'nnu', 'Nn3g19534' => 'nnu', 'Nn3g19535' => 'nnu', 'Oeu008790.1' => 'oeu', 'Oeu008792.1' => 'oeu', 'Oeu032590.1' => 'oeu', 'Oeu035349.1' => 'oeu', 'Oeu049791.1' => 'oeu', 'Os01g0774500' => 'osa', 'Os03g0628800' => 'osa', 'Os03g0798600' => 'osa', 'Os05g0508800' => 'osa', 'Peaxi162Scf00036g02018' => 'pax', 'Peaxi162Scf00578g00032' => 'pax', 'Peaxi162Scf00578g00317' => 'pax', 'Peaxi162Scf00785g00114' => 'pax', 'Peaxi162Scf00813g00119' => 'pax', 'Peaxi162Scf00906g00227' => 'pax', 'PGR004G0875' => 'pgr', 'PGR004G2424' => 'pgr', 'PGR031G1239' => 'pgr', 'PGR031G2474' => 'pgr', 'PGR044G0423' => 'pgr', 'PGSC0003DMG400001128' => 'stu', 'PGSC0003DMG400007336' => 'stu', 'PGSC0003DMG400016318' => 'stu', 'PGSC0003DMG400016319' => 'stu', 'PGSC0003DMG400018074' => 'stu', 'Phvul.001G157700' => 'pvu', 'Phvul.002G148550' => 'pvu', 'Phvul.002G320200' => 'pvu', 'Phvul.003G089200' => 'pvu', 'Phvul.007G126000' => 'pvu', 'Phvul.007G126100' => 'pvu', 'Phvul.007G178000' => 'pvu', 'Phvul.007G178200' => 'pvu', 'Potri.002G043000' => 'ptr', 'Potri.002G043200' => 'ptr', 'Potri.003G123750' => 'ptr', 'Potri.005G055401' => 'ptr', 'Potri.005G219700' => 'ptr', 'Potri.005G220000' => 'ptr', 'Potri.008G161901' => 'ptr', 'Potri.008G162000' => 'ptr', 'Potri.008G162400' => 'ptr', 'Potri.010G076900' => 'ptr', 'Pp3c12_9180' => 'ppa', 'Pp3c13_19770' => 'ppa', 'Pp3c14_22950' => 'ppa', 'Pp3c16_12160' => 'ppa', 'Pp3c27_7820' => 'ppa', 'Pp3c2_3490' => 'ppa', 'Pp3c3_23700' => 'ppa', 'Pp3c3_36520' => 'ppa', 'Pp3c4_15250' => 'ppa', 'PRCOL_00007002' => 'pco', 'Prupe.1G030600' => 'ppe', 'Prupe.1G030700' => 'ppe', 'Prupe.6G345200' => 'ppe', 'Prupe.8G230300' => 'ppe', 'Prupe.8G230500' => 'ppe', 'Psat3g059600' => 'psa', 'Psat5g200920' => 'psa', 'Psat6g056440' => 'psa', 'Psat6g057360' => 'psa', 'Psat6g134120' => 'psa', 'Psat6g134160' => 'psa', 'Psat7g008640' => 'psa', 'Psat7g185240' => 'psa', 'PSO017G1330' => 'pso', 'PSO063G6097' => 'pso', 'PSO170G0835' => 'pso', 'PSO170G2499' => 'pso', 'PSO210G5058' => 'pso', 'PSO210G6154' => 'pso', 'PSO585G0031' => 'pso', 'PSO832G0264' => 'pso', 'PSO832G4288' => 'pso', 'QL03p027355' => 'qlo', 'QL03p027430' => 'qlo', 'QL04p081380' => 'qlo', 'QL06p015642' => 'qlo', 'QL06p015650' => 'qlo', 'QL06p015686' => 'qlo', 'QL12p042927' => 'qlo', 'QL93p1863_0035' => 'qlo', 'RcHm_v2.0_Chr3g0450581' => 'rch', 'RcHm_v2.0_Chr4g0390371' => 'rch', 'RcHm_v2.0_Chr4g0390381' => 'rch', 'RcHm_v2.0_Chr4g0390491' => 'rch', 'RcHm_v2.0_Chr4g0390501' => 'rch', 'RcHm_v2.0_Chr6g0289231' => 'rch', 'Rhsim04G0190400' => 'rsi', 'Rhsim04G0190500' => 'rsi', 'Rhsim04G0190600' => 'rsi', 'Rhsim13G0031400' => 'rsi', 'Rhsim13G0165600' => 'rsi', 'RhsimUnG0114600' => 'rsi', 'RhsimUnG0114700' => 'rsi', 'Sabra02G0034800' => 'sbr', 'Sabra02G0035100' => 'sbr', 'Sabra05G0168600' => 'sbr', 'Sabra05G0168800' => 'sbr', 'Sabra08G0123700' => 'sbr', 'Sabra10G0031900' => 'sbr', 'Sabra13G0039000' => 'sbr', 'SalBow2G0782' => 'sbo', 'SalBow2G1403' => 'sbo', 'SalBow4G0074' => 'sbo', 'SalBow4G2635' => 'sbo', 'SalBow5G3010' => 'sbo', 'Sc05g0000870' => 'sci', 'Sc05g0000890' => 'sci', 'Sc13g0005000' => 'sci', 'Sc13g0005030' => 'sci', 'Sc19g0003790' => 'sci', 'Sc19g0003800' => 'sci', 'Sed0003467' => 'sed', 'Sed0009355' => 'sed', 'Sed0009894' => 'sed', 'Sed0011972' => 'sed', 'Sed0021483' => 'sed', 'Sed0021750' => 'sed', 'Sed0026279' => 'sed', 'SEGI_05312' => 'sgi', 'SEGI_10112' => 'sgi', 'SEGI_15835' => 'sgi', 'SEGI_30386' => 'sgi', 'SEGI_34122' => 'sgi', 'SEGI_35063' => 'sgi', 'SGA_v2.0_scaffold101G29794' => 'sas', 'SGA_v2.0_scaffold1G00573' => 'sas', 'SGA_v2.0_scaffold79G25637' => 'sas', 'SGA_v2.0_scaffold88G27283' => 'sas', 'SGA_v2.0_scaffold88G27285' => 'sas', 'SGA_v2.0_scaffold88G27331' => 'sas', 'SHI09937' => 'shi', 'SMO119G0302' => 'smo', 'SMO137G0231' => 'smo', 'SMO367G1151' => 'smo', 'Solyc02g082000.3' => 'sly', 'Solyc06g031670.3' => 'sly', 'Solyc06g053810.3' => 'sly', 'Solyc07g025457.1' => 'sly', 'Solyc08g059740.1' => 'sly', 'Solyc08g059750.3' => 'sly', 'Solyc09g083370.3' => 'sly', 'Solyc12g038950.3' => 'sly', 'Sopen02g026630' => 'spe', 'Sopen06g018930' => 'spe', 'Sopen06g018940' => 'spe', 'Sopen08g009460' => 'spe', 'Sopen09g032290' => 'spe', 'Sp1g03080' => 'spa', 'Sp1g03090' => 'spa', 'Sp1g05480' => 'spa', 'Sp2g07860' => 'spa', 'Sp2g08430' => 'spa', 'Sp2g08440' => 'spa', 'Sp2g26200' => 'spa', 'Sp4g13170' => 'spa', 'Sp6g33840' => 'spa', 'SpUn1204_0010' => 'spa', 'TAR365G0908' => 'tar', 'TAR381G1270' => 'tar', 'TAR381G1651' => 'tar', 'TAR625G1131' => 'tar', 'TAR633G0962' => 'tar', 'TAR633G1729' => 'tar', 'TAR633G1864' => 'tar', 'TAR636G0221' => 'tar', 'TAR636G0314' => 'tar', 'TAR636G3202' => 'tar', 'THA.LOC104800805' => 'tha', 'THA.LOC104801096' => 'tha', 'THA.LOC104801555' => 'tha', 'THA.LOC104808491' => 'tha', 'THA.LOC104808595' => 'tha', 'THA.LOC104815985' => 'tha', 'THA.LOC104822250' => 'tha', 'THA.LOC104826071' => 'tha', 'Thecc.01G265200' => 'tca', 'Thecc.01G265300' => 'tca', 'Thecc.01G265700' => 'tca', 'Thecc.03G109100' => 'tca', 'Thecc.04G245900' => 'tca', 'Thecc.04G246000' => 'tca', 'Thhalv10003334m.g' => 'esa', 'Thhalv10005508m.g' => 'esa', 'Thhalv10005643m.g' => 'esa', 'Thhalv10007316m.g' => 'esa', 'Thhalv10009006m.g' => 'esa', 'Thhalv10009309m.g' => 'esa', 'Thhalv10014917m.g' => 'esa', 'Thhalv10014919m.g' => 'esa', 'Thhalv10015393m.g' => 'esa', 'Thhalv10016515m.g' => 'esa', 'Thhalv10029242m.g' => 'esa', 'TPR.G16654' => 'tpr', 'TPR.G20589' => 'tpr', 'TPR.G23029' => 'tpr', 'TPR.G27731' => 'tpr', 'TPR.G28889' => 'tpr', 'TPR.G28899' => 'tpr', 'TPR.G30846' => 'tpr', 'TPR.G5452' => 'tpr', 'TPR.G5713' => 'tpr', 'TPR.G9046' => 'tpr', 'TPR.G9061' => 'tpr', 'TWI09G1075' => 'twi', 'TWI12G0806' => 'twi', 'TWI18G0108' => 'twi', 'TWI53G1361' => 'twi', 'TWI73G0185' => 'twi', 'TWI73G0427' => 'twi', 'unitig_37.g12001' => 'ugi', 'unitig_747.g21660' => 'ugi', 'unitig_748.g7232' => 'ugi', 'unitig_748.g7315' => 'ugi', 'unitig_85.g27262' => 'ugi', 'unitig_92.g28220' => 'ugi', 'vmacro02632' => 'vma', 'vmacro08410' => 'vma', 'vmacro08411' => 'vma', 'vmacro15407' => 'vma', 'VMungo0251G3619' => 'vmu', 'VMungo0720G1204' => 'vmu', 'VMungo0720G1918' => 'vmu', 'VMungo0720G2387' => 'vmu', 'VMungo0720G2961' => 'vmu', 'VMungo1215G2154' => 'vmu', 'VMungo1383G2411' => 'vmu', 'Zm00001eb051130' => 'zma', 'Zm00001eb116830' => 'zma', 'Zm00001eb116850' => 'zma', 'Zm00001eb151740' => 'zma', 'Zm00001eb292360' => 'zma', 'Zm00001eb301640' => 'zma' ) $gf_id = 'HOM05D000856' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000856' ) $data_identifier = 'HOM05D000856' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 13, 'ath' => (int) 10, 'atr' => (int) 1, 'acertr' => (int) 8, 'cqu' => (int) 6, 'bca' => (int) 21, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 11, 'car' => (int) 9, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 8, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 5, 'fan' => (int) 16, 'fve' => (int) 6, 'gma' => (int) 11, 'ghi' => (int) 19, 'gra' => (int) 9, 'vvi' => (int) 7, 'han' => (int) 17, 'cav' => (int) 5, 'hma' => (int) 2, 'vpl' => (int) 2, 'sun' => (int) 7, 'lal' => (int) 9, 'lja' => (int) 5, 'lonja' => (int) 9, 'lsa' => (int) 5, 'mes' => (int) 8, 'mpo' => (int) 3, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 10, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 15, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 9, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 9, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 6, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 5, 'spa' => (int) 10, 'tar' => (int) 10, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 11, 'tpr' => (int) 11, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 4, 'vmu' => (int) 7, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb301640' $species_info = array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ) $local_species = 'oeu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000856', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p00010' => 'bna', 'A03p04160' => 'bna', 'A03p17160' => 'bna', 'A04p23370' => 'bna', 'A05p14860' => 'bna', 'A08p37020' => 'bna', 'A09p08050' => 'bna', 'A09p66800' => 'bna', 'A09p67940' => 'bna', 'A10p02680' => 'bna', 'A10p05320' => 'bna', 'Aa31LG1G20560' => 'aar', 'Aa31LG1G20610' => 'aar', 'Aa31LG1G7810' => 'aar', 'Aa31LG5G3590' => 'aar', 'Aa31LG5G6140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3819' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4683' => 'aag', 'Actinidia04480' => 'ach', 'Actinidia05466' => 'ach', 'Actinidia08445' => 'ach', 'Actinidia21170' => 'ach', 'Actinidia24812' => 'ach', 'Actinidia24951' => 'ach', 'Actinidia40088' => 'ach', 'Ah.02g111660' => 'amhyb', 'Ah.11g048900' => 'amhyb', 'Ah.11g049910' => 'amhyb', 'AL1G13870' => 'aly', 'AL1G13880' => 'aly', 'AL1G16760' => 'aly', 'AL390U10020' => 'aly', 'AL4G25520' => 'aly', 'AL6G19890' => 'aly', 'AL6G19900' => 'aly', 'AL6G19910' => 'aly', 'AL8G40100' => 'aly', 'Aqoxy2G03562' => 'aox', 'Aqoxy5G00316' => 'aox', 'Aqoxy5G00926' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1628KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1H403S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2FU6SJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.882I6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8YRY2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YN1SN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AF70II' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZA8L1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F916KL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHRD8H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KTZ8QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S22EMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8M29T' => 'arhy', 'AT1G04270' => 'ath', 'AT1G04280' => 'ath', 'AT1G06750' => 'ath', 'AT1G33850' => 'ath', 'AT2G30630' => 'ath', 'AT5G09490' => 'ath', 'AT5G09500' => 'ath', 'AT5G09510' => 'ath', 'AT5G43640' => 'ath', 'AT5G63070' => 'ath', 'ATR0605G315' => 'atr', 'Atru.chr11.175' => 'acertr', 'Atru.chr11.653' => 'acertr', 'Atru.chr3.1616' => 'acertr', 'Atru.chr4.2230' => 'acertr', 'Atru.chr4.2232' => 'acertr', 'Atru.chr5.1598' => 'acertr', 'Atru.chr5.1600' => 'acertr', 'Atru.chr5.2188' => 'acertr', 'AUR62008326' => 'cqu', 'AUR62011922' => 'cqu', 'AUR62011924' => 'cqu', 'AUR62021771' => 'cqu', 'AUR62032237' => 'cqu', 'AUR62032240' => 'cqu', 'BcaB01g05572' => 'bca', 'BcaB02g10337' => 'bca', 'BcaB04g19944' => 'bca', 'BcaB05g21548' => 'bca', 'BcaB05g21549' => 'bca', 'BcaB05g23227' => 'bca', 'BcaB06g26256' => 'bca', 'BcaB06g26257' => 'bca', 'BcaB06g28379' => 'bca', 'BcaC02g11159' => 'bca', 'BcaC03g13258' => 'bca', 'BcaC03g13259' => 'bca', 'BcaC05g24456' => 'bca', 'BcaC05g24457' => 'bca', 'BcaC07g36922' => 'bca', 'BcaC07g36923' => 'bca', 'BcaC07g42050' => 'bca', 'BcaC07g42176' => 'bca', 'BcaC07g42195' => 'bca', 'BcaC07g42196' => 'bca', 'BcaNung06674' => 'bca', 'BolC2t06351H' => 'bol', 'BolC2t06352H' => 'bol', 'BolC3t12993H' => 'bol', 'BolC4t23525H' => 'bol', 'BolC4t27475H' => 'bol', 'BolC5t29025H' => 'bol', 'BolC5t29026H' => 'bol', 'BolC8t46898H' => 'bol', 'BolC8t46899H' => 'bol', 'BolC8t52630H' => 'bol', 'BolC8t52765H' => 'bol', 'BolC9t53824H' => 'bol', 'BraA03t09760Z' => 'bra', 'BraA03t10990Z' => 'bra', 'BraA05t20413Z' => 'bra', 'BraA08t35602Z' => 'bra', 'BraA09t36458Z' => 'bra', 'BraA09t42018Z' => 'bra', 'BraA09t42129Z' => 'bra', 'BraA10t42536Z' => 'bra', 'BraA10t42537Z' => 'bra', 'C01p10690' => 'bna', 'C02p03890' => 'bna', 'C02p03900' => 'bna', 'C03p04620' => 'bna', 'C04p19870' => 'bna', 'C04p59670' => 'bna', 'C05p02460' => 'bna', 'C05p02470' => 'bna', 'C08p00980' => 'bna', 'C08p00990' => 'bna', 'C08p51030' => 'bna', 'C08p52360' => 'bna', 'C09p09120' => 'bna', 'CAN.G19.15' => 'can', 'CAN.G251.10' => 'can', 'CAN.G251.9' => 'can', 'CAN.G398.24' => 'can', 'CAN.G410.32' => 'can', 'CAN.G881.2' => 'can', 'CANSAT01G3025' => 'cansat', 'CANSAT78G1211' => 'cansat', 'CANSAT78G1218' => 'cansat', 'CANSAT78G1521' => 'cansat', 'CANSAT78G1670' => 'cansat', 'CARHR003600' => 'chi', 'CARHR003610' => 'chi', 'CARHR006290' => 'chi', 'CARHR006430' => 'chi', 'CARHR124110' => 'chi', 'CARHR203870' => 'chi', 'CARHR203880' => 'chi', 'CARHR203890' => 'chi', 'CARHR276880' => 'chi', 'Carub.0001s0346' => 'cru', 'Carub.0001s0347' => 'cru', 'Carub.0001s0607' => 'cru', 'Carub.0003s2768' => 'cru', 'Carub.0003s2769' => 'cru', 'Carub.0004s1178' => 'cru', 'Carub.0006s0806' => 'cru', 'Carub.0006s0807' => 'cru', 'Carub.0006s0808' => 'cru', 'Carub.0008s0501' => 'cru', 'Carub.0008s2379' => 'cru', 'Ca_08655_v3' => 'car', 'Ca_08922_v3' => 'car', 'Ca_08923_v3' => 'car', 'Ca_09119_v3' => 'car', 'Ca_09703_v3' => 'car', 'Ca_09705_v3' => 'car', 'Ca_09835_v3' => 'car', 'Ca_26403_v3' => 'car', 'Ca_30719_v3' => 'car', 'CBR_g17958' => 'cbr', 'CBR_g40516' => 'cbr', 'Cc00_g05350' => 'ccan', 'Cc01_g18690' => 'ccan', 'Cc03_g04830' => 'ccan', 'Cc03_g04850' => 'ccan', 'CDE02G4469' => 'cde', 'CDE06G0883' => 'cde', 'CDE06G1295' => 'cde', 'CDE06G1390' => 'cde', 'CDE07G0584' => 'cde', 'CDE07G1084' => 'cde', 'CDE08G1259' => 'cde', 'Cfa002341' => 'cfa', 'Cfa024337' => 'cfa', 'Ciclev10004749m.g' => 'ccl', 'Ciclev10006127m.g' => 'ccl', 'Ciclev10019720m.g' => 'ccl', 'Ciclev10022652m.g' => 'ccl', 'CiPaw.01G190400' => 'cil', 'CiPaw.01G190500' => 'cil', 'CiPaw.02G116400' => 'cil', 'CiPaw.02G116500' => 'cil', 'CiPaw.04G183000' => 'cil', 'CiPaw.04G183300' => 'cil', 'ClCG05G004610' => 'cla', 'ClCG05G004620' => 'cla', 'ClCG06G006730' => 'cla', 'ClCG06G006740' => 'cla', 'ClCG11G003690' => 'cla', 'COL.COLO4_08276' => 'col', 'COL.COLO4_08277' => 'col', 'COL.COLO4_15787' => 'col', 'COL.COLO4_15789' => 'col', 'Cpa.g.c44815' => 'cpa', 'Cpa.g.sc52.144' => 'cpa', 'Cpa.g.sc58.46' => 'cpa', 'Cpa.g.sc58.47' => 'cpa', 'Cre08.g360900' => 'cre', 'CsaV3_2G013030' => 'csa', 'CsaV3_2G013050' => 'csa', 'CsaV3_2G015620' => 'csa', 'CsaV3_3G012590' => 'csa', 'CsaV3_3G012600' => 'csa', 'CSS0001641' => 'camsi', 'CSS0008310' => 'camsi', 'CSS0013011' => 'camsi', 'CSS0017147' => 'camsi', 'CSS0022970' => 'camsi', 'CSS0025655' => 'camsi', 'CSS0028665' => 'camsi', 'CSS0029117' => 'camsi', 'CSS0032024' => 'camsi', 'CSS0039681' => 'camsi', 'CSS0046516' => 'camsi', 'CSS0050307' => 'camsi', 'DCAR_005871' => 'dca', 'DCAR_007342' => 'dca', 'DCAR_024228' => 'dca', 'DCAR_027277' => 'dca', 'DCAR_030718' => 'dca', 'Dinv20287' => 'din', 'Dinv22461' => 'din', 'Dinv22464' => 'din', 'Dinv29912' => 'din', 'Dinv29913' => 'din', 'Dinv34580' => 'din', 'Dinv34582' => 'din', 'Dinv44632' => 'din', 'Duzib052G0266' => 'dzi', 'Duzib133G0907' => 'dzi', 'Duzib133G1034' => 'dzi', 'Duzib138G0207' => 'dzi', 'Duzib138G0491' => 'dzi', 'Duzib151G0812' => 'dzi', 'Duzib151G1166' => 'dzi', 'Duzib168G0192' => 'dzi', 'Duzib211G0077' => 'dzi', 'Duzib212G0429' => 'dzi', 'Duzib212G0472' => 'dzi', 'ECA233G2617' => 'eca', 'ECA236G4188' => 'eca', 'ECA240G0936' => 'eca', 'ECA240G1129' => 'eca', 'ECA247G0623' => 'eca', 'EL10Ac5g10451' => 'bvu', 'EL10Ac5g10453' => 'bvu', 'EL10Ac5g10894' => 'bvu', 'Eucgr.H00192' => 'egr', 'Eucgr.H00193' => 'egr', 'Eucgr.H00194' => 'egr', 'Eucgr.J01562' => 'egr', 'Eucgr.K03301' => 'egr', 'FAN02G0632' => 'fan', 'FAN05G5378' => 'fan', 'FAN09G3247' => 'fan', 'FAN12G0435' => 'fan', 'FAN12G2426' => 'fan', 'FAN14G1707' => 'fan', 'FAN14G4725' => 'fan', 'FAN15G2071' => 'fan', 'FAN17G3065' => 'fan', 'FAN19G1376' => 'fan', 'FAN20G0354' => 'fan', 'FAN20G2429' => 'fan', 'FAN20G2658' => 'fan', 'FAN24G2343' => 'fan', 'FAN27G2362' => 'fan', 'FAN28G1765' => 'fan', 'FvH4_1g16020' => 'fve', 'FvH4_2g04890' => 'fve', 'FvH4_2g22270' => 'fve', 'FvH4_4g02630' => 'fve', 'FvH4_4g02640' => 'fve', 'FvH4_6g02650' => 'fve', 'Glyma.02G140600' => 'gma', 'Glyma.03G159900' => 'gma', 'Glyma.05G234800' => 'gma', 'Glyma.07G269600' => 'gma', 'Glyma.08G042300' => 'gma', 'Glyma.10G033500' => 'gma', 'Glyma.10G185200' => 'gma', 'Glyma.17G004300' => 'gma', 'Glyma.19G161900' => 'gma', 'Glyma.20G205100' => 'gma', 'Glyma.20G205200' => 'gma', 'Gohir.A01G139101' => 'ghi', 'Gohir.A02G035600' => 'ghi', 'Gohir.A02G117901' => 'ghi', 'Gohir.A07G210100' => 'ghi', 'Gohir.A07G210200' => 'ghi', 'Gohir.A08G061100' => 'ghi', 'Gohir.A09G223000' => 'ghi', 'Gohir.A09G223100' => 'ghi', 'Gohir.A10G113900' => 'ghi', 'Gohir.A10G114000' => 'ghi', 'Gohir.D02G042300' => 'ghi', 'Gohir.D07G216100' => 'ghi', 'Gohir.D07G216200' => 'ghi', 'Gohir.D08G070400' => 'ghi', 'Gohir.D09G225000' => 'ghi', 'Gohir.D09G225100' => 'ghi', 'Gohir.D10G152300' => 'ghi', 'Gohir.D10G153200' => 'ghi', 'Gohir.D11G133701' => 'ghi', 'Gorai.004G074100' => 'gra', 'Gorai.005G046800' => 'gra', 'Gorai.006G246500' => 'gra', 'Gorai.006G246600' => 'gra', 'Gorai.007G142900' => 'gra', 'Gorai.011G171000' => 'gra', 'Gorai.011G171100' => 'gra', 'Gorai.013G104300' => 'gra', 'Gorai.013G104400' => 'gra', 'GSVIVG01000754001' => 'vvi', 'GSVIVG01000756001' => 'vvi', 'GSVIVG01010903001' => 'vvi', 'GSVIVG01017623001' => 'vvi', 'GSVIVG01018113001' => 'vvi', 'GSVIVG01018116001' => 'vvi', 'GSVIVG01018118001' => 'vvi', 'HanXRQChr03g0076211' => 'han', 'HanXRQChr03g0092431' => 'han', 'HanXRQChr03g0092441' => 'han', 'HanXRQChr03g0092591' => 'han', 'HanXRQChr03g0092671' => 'han', 'HanXRQChr03g0092681' => 'han', 'HanXRQChr03g0092691' => 'han', 'HanXRQChr03g0092701' => 'han', 'HanXRQChr03g0092721' => 'han', 'HanXRQChr03g0092731' => 'han', 'HanXRQChr04g0113681' => 'han', 'HanXRQChr10g0281371' => 'han', 'HanXRQChr11g0337141' => 'han', 'HanXRQChr13g0424521' => 'han', 'HanXRQChr13g0424531' => 'han', 'HanXRQChr13g0424541' => 'han', 'HanXRQChr16g0498221' => 'han', 'Haze_04377' => 'cav', 'Haze_11298' => 'cav', 'Haze_24547' => 'cav', 'Haze_24550' => 'cav', 'Haze_26587' => 'cav', 'Hma1.2p1_0650F.1_g195410' => 'hma', 'Hma1.2p1_0893F.1_g233470' => 'hma', 'HPP92_006508' => 'vpl', 'HPP92_024780' => 'vpl', 'Hund02688' => 'sun', 'Hund09380' => 'sun', 'Hund09381' => 'sun', 'Hund09832' => 'sun', 'Hund09833' => 'sun', 'Hund11351' => 'sun', 'Hund11513' => 'sun', 'Lalb_Chr06g0162591' => 'lal', 'Lalb_Chr06g0162601' => 'lal', 'Lalb_Chr06g0169321' => 'lal', 'Lalb_Chr09g0330951' => 'lal', 'Lalb_Chr16g0387631' => 'lal', 'Lalb_Chr21g0306241' => 'lal', 'Lalb_Chr25g0290051' => 'lal', 'Lalb_Chr25g0290061' => 'lal', 'Lalb_Chr25g0290071' => 'lal', 'Lj1g0003876' => 'lja', 'Lj1P1207T36' => 'lonja', 'Lj2C1156G12' => 'lonja', 'Lj3A793G39' => 'lonja', 'Lj3C580G2' => 'lonja', 'Lj3C780G2' => 'lonja', 'Lj3C780T4' => 'lonja', 'Lj3C793G9' => 'lonja', 'Lj4g0012960' => 'lja', 'Lj5g0021252' => 'lja', 'Lj5g0021484' => 'lja', 'Lj5g0024528' => 'lja', 'Lj6A399T12' => 'lonja', 'Lj6A656G65' => 'lonja', 'Lsat_1_v5_gn_3_125500' => 'lsa', 'Lsat_1_v5_gn_3_125540' => 'lsa', 'Lsat_1_v5_gn_5_72701' => 'lsa', 'Lsat_1_v5_gn_8_91560' => 'lsa', 'Lsat_1_v5_gn_9_9640' => 'lsa', 'Manes.01G200600' => 'mes', 'Manes.01G200700' => 'mes', 'Manes.03G168900' => 'mes', 'Manes.03G169000' => 'mes', 'Manes.05G085801' => 'mes', 'Manes.05G086200' => 'mes', 'Manes.15G036700' => 'mes', 'Manes.15G036900' => 'mes', 'Mapoly0004s0172' => 'mpo', 'Mapoly0023s0001' => 'mpo', 'Mapoly0142s0012' => 'mpo', 'MBI01_g32854_MAGBIO' => 'mbi', 'MBI11_g24427_MAGBIO' => 'mbi', 'MBI11_g47319_MAGBIO' => 'mbi', 'MCO01G433' => 'mco', 'MD00G1187800' => 'mdo', 'MD04G1226500' => 'mdo', 'MD05G1203900' => 'mdo', 'MD10G1191100' => 'mdo', 'MD12G1243500' => 'mdo', 'MD13G1207000' => 'mdo', 'MD13G1207100' => 'mdo', 'MD16G1208600' => 'mdo', 'Medtr1g050352' => 'mtr', 'Medtr1g070385' => 'mtr', 'Medtr1g070450' => 'mtr', 'Medtr1g075200' => 'mtr', 'Medtr1g075250' => 'mtr', 'Medtr1g075260' => 'mtr', 'Medtr1g475250' => 'mtr', 'Medtr4g075450' => 'mtr', 'Medtr7g096300' => 'mtr', 'Medtr8g105110' => 'mtr', 'MELO3C006470.2' => 'cme', 'MELO3C006471.2' => 'cme', 'MELO3C020772.2' => 'cme', 'MELO3C026780.2' => 'cme', 'MELO3C026781.2' => 'cme', 'Migut.D00390' => 'egut', 'Migut.G00435' => 'egut', 'Migut.G00436' => 'egut', 'Migut.G00718' => 'egut', 'MSTRG.21891' => 'ama', 'MSTRG.26910' => 'ama', 'MSTRG.4099' => 'ama', 'MSTRG.9925' => 'ama', 'Nitab4.5_0000165g0010' => 'nta', 'Nitab4.5_0000209g0180' => 'nta', 'Nitab4.5_0000244g0440' => 'nta', 'Nitab4.5_0000525g0220' => 'nta', 'Nitab4.5_0001597g0020' => 'nta', 'Nitab4.5_0001878g0040' => 'nta', 'Nitab4.5_0001878g0060' => 'nta', 'Nitab4.5_0002838g0100' => 'nta', 'Nitab4.5_0002838g0120' => 'nta', 'Nitab4.5_0004798g0030' => 'nta', 'Nitab4.5_0005420g0010' => 'nta', 'Nitab4.5_0005507g0010' => 'nta', 'Nitab4.5_0005574g0020' => 'nta', 'Nitab4.5_0005838g0010' => 'nta', 'Nitab4.5_0010580g0020' => 'nta', 'Nn1g02599' => 'nnu', 'Nn1g02608' => 'nnu', 'Nn3g17742' => 'nnu', 'Nn3g19534' => 'nnu', 'Nn3g19535' => 'nnu', 'Oeu008790.1' => 'oeu', 'Oeu008792.1' => 'oeu', 'Oeu032590.1' => 'oeu', 'Oeu035349.1' => 'oeu', 'Oeu049791.1' => 'oeu', 'Os01g0774500' => 'osa', 'Os03g0628800' => 'osa', 'Os03g0798600' => 'osa', 'Os05g0508800' => 'osa', 'Peaxi162Scf00036g02018' => 'pax', 'Peaxi162Scf00578g00032' => 'pax', 'Peaxi162Scf00578g00317' => 'pax', 'Peaxi162Scf00785g00114' => 'pax', 'Peaxi162Scf00813g00119' => 'pax', 'Peaxi162Scf00906g00227' => 'pax', 'PGR004G0875' => 'pgr', 'PGR004G2424' => 'pgr', 'PGR031G1239' => 'pgr', 'PGR031G2474' => 'pgr', 'PGR044G0423' => 'pgr', 'PGSC0003DMG400001128' => 'stu', 'PGSC0003DMG400007336' => 'stu', 'PGSC0003DMG400016318' => 'stu', 'PGSC0003DMG400016319' => 'stu', 'PGSC0003DMG400018074' => 'stu', 'Phvul.001G157700' => 'pvu', 'Phvul.002G148550' => 'pvu', 'Phvul.002G320200' => 'pvu', 'Phvul.003G089200' => 'pvu', 'Phvul.007G126000' => 'pvu', 'Phvul.007G126100' => 'pvu', 'Phvul.007G178000' => 'pvu', 'Phvul.007G178200' => 'pvu', 'Potri.002G043000' => 'ptr', 'Potri.002G043200' => 'ptr', 'Potri.003G123750' => 'ptr', 'Potri.005G055401' => 'ptr', 'Potri.005G219700' => 'ptr', 'Potri.005G220000' => 'ptr', 'Potri.008G161901' => 'ptr', 'Potri.008G162000' => 'ptr', 'Potri.008G162400' => 'ptr', 'Potri.010G076900' => 'ptr', 'Pp3c12_9180' => 'ppa', 'Pp3c13_19770' => 'ppa', 'Pp3c14_22950' => 'ppa', 'Pp3c16_12160' => 'ppa', 'Pp3c27_7820' => 'ppa', 'Pp3c2_3490' => 'ppa', 'Pp3c3_23700' => 'ppa', 'Pp3c3_36520' => 'ppa', 'Pp3c4_15250' => 'ppa', 'PRCOL_00007002' => 'pco', 'Prupe.1G030600' => 'ppe', 'Prupe.1G030700' => 'ppe', 'Prupe.6G345200' => 'ppe', 'Prupe.8G230300' => 'ppe', 'Prupe.8G230500' => 'ppe', 'Psat3g059600' => 'psa', 'Psat5g200920' => 'psa', 'Psat6g056440' => 'psa', 'Psat6g057360' => 'psa', 'Psat6g134120' => 'psa', 'Psat6g134160' => 'psa', 'Psat7g008640' => 'psa', 'Psat7g185240' => 'psa', 'PSO017G1330' => 'pso', 'PSO063G6097' => 'pso', 'PSO170G0835' => 'pso', 'PSO170G2499' => 'pso', 'PSO210G5058' => 'pso', 'PSO210G6154' => 'pso', 'PSO585G0031' => 'pso', 'PSO832G0264' => 'pso', 'PSO832G4288' => 'pso', 'QL03p027355' => 'qlo', 'QL03p027430' => 'qlo', 'QL04p081380' => 'qlo', 'QL06p015642' => 'qlo', 'QL06p015650' => 'qlo', 'QL06p015686' => 'qlo', 'QL12p042927' => 'qlo', 'QL93p1863_0035' => 'qlo', 'RcHm_v2.0_Chr3g0450581' => 'rch', 'RcHm_v2.0_Chr4g0390371' => 'rch', 'RcHm_v2.0_Chr4g0390381' => 'rch', 'RcHm_v2.0_Chr4g0390491' => 'rch', 'RcHm_v2.0_Chr4g0390501' => 'rch', 'RcHm_v2.0_Chr6g0289231' => 'rch', 'Rhsim04G0190400' => 'rsi', 'Rhsim04G0190500' => 'rsi', 'Rhsim04G0190600' => 'rsi', 'Rhsim13G0031400' => 'rsi', 'Rhsim13G0165600' => 'rsi', 'RhsimUnG0114600' => 'rsi', 'RhsimUnG0114700' => 'rsi', 'Sabra02G0034800' => 'sbr', 'Sabra02G0035100' => 'sbr', 'Sabra05G0168600' => 'sbr', 'Sabra05G0168800' => 'sbr', 'Sabra08G0123700' => 'sbr', 'Sabra10G0031900' => 'sbr', 'Sabra13G0039000' => 'sbr', 'SalBow2G0782' => 'sbo', 'SalBow2G1403' => 'sbo', 'SalBow4G0074' => 'sbo', 'SalBow4G2635' => 'sbo', 'SalBow5G3010' => 'sbo', 'Sc05g0000870' => 'sci', 'Sc05g0000890' => 'sci', 'Sc13g0005000' => 'sci', 'Sc13g0005030' => 'sci', 'Sc19g0003790' => 'sci', 'Sc19g0003800' => 'sci', 'Sed0003467' => 'sed', 'Sed0009355' => 'sed', 'Sed0009894' => 'sed', 'Sed0011972' => 'sed', 'Sed0021483' => 'sed', 'Sed0021750' => 'sed', 'Sed0026279' => 'sed', 'SEGI_05312' => 'sgi', 'SEGI_10112' => 'sgi', 'SEGI_15835' => 'sgi', 'SEGI_30386' => 'sgi', 'SEGI_34122' => 'sgi', 'SEGI_35063' => 'sgi', 'SGA_v2.0_scaffold101G29794' => 'sas', 'SGA_v2.0_scaffold1G00573' => 'sas', 'SGA_v2.0_scaffold79G25637' => 'sas', 'SGA_v2.0_scaffold88G27283' => 'sas', 'SGA_v2.0_scaffold88G27285' => 'sas', 'SGA_v2.0_scaffold88G27331' => 'sas', 'SHI09937' => 'shi', 'SMO119G0302' => 'smo', 'SMO137G0231' => 'smo', 'SMO367G1151' => 'smo', 'Solyc02g082000.3' => 'sly', 'Solyc06g031670.3' => 'sly', 'Solyc06g053810.3' => 'sly', 'Solyc07g025457.1' => 'sly', 'Solyc08g059740.1' => 'sly', 'Solyc08g059750.3' => 'sly', 'Solyc09g083370.3' => 'sly', 'Solyc12g038950.3' => 'sly', 'Sopen02g026630' => 'spe', 'Sopen06g018930' => 'spe', 'Sopen06g018940' => 'spe', 'Sopen08g009460' => 'spe', 'Sopen09g032290' => 'spe', 'Sp1g03080' => 'spa', 'Sp1g03090' => 'spa', 'Sp1g05480' => 'spa', 'Sp2g07860' => 'spa', 'Sp2g08430' => 'spa', 'Sp2g08440' => 'spa', 'Sp2g26200' => 'spa', 'Sp4g13170' => 'spa', 'Sp6g33840' => 'spa', 'SpUn1204_0010' => 'spa', 'TAR365G0908' => 'tar', 'TAR381G1270' => 'tar', 'TAR381G1651' => 'tar', 'TAR625G1131' => 'tar', 'TAR633G0962' => 'tar', 'TAR633G1729' => 'tar', 'TAR633G1864' => 'tar', 'TAR636G0221' => 'tar', 'TAR636G0314' => 'tar', 'TAR636G3202' => 'tar', 'THA.LOC104800805' => 'tha', 'THA.LOC104801096' => 'tha', 'THA.LOC104801555' => 'tha', 'THA.LOC104808491' => 'tha', 'THA.LOC104808595' => 'tha', 'THA.LOC104815985' => 'tha', 'THA.LOC104822250' => 'tha', 'THA.LOC104826071' => 'tha', 'Thecc.01G265200' => 'tca', 'Thecc.01G265300' => 'tca', 'Thecc.01G265700' => 'tca', 'Thecc.03G109100' => 'tca', 'Thecc.04G245900' => 'tca', 'Thecc.04G246000' => 'tca', 'Thhalv10003334m.g' => 'esa', 'Thhalv10005508m.g' => 'esa', 'Thhalv10005643m.g' => 'esa', 'Thhalv10007316m.g' => 'esa', 'Thhalv10009006m.g' => 'esa', 'Thhalv10009309m.g' => 'esa', 'Thhalv10014917m.g' => 'esa', 'Thhalv10014919m.g' => 'esa', 'Thhalv10015393m.g' => 'esa', 'Thhalv10016515m.g' => 'esa', 'Thhalv10029242m.g' => 'esa', 'TPR.G16654' => 'tpr', 'TPR.G20589' => 'tpr', 'TPR.G23029' => 'tpr', 'TPR.G27731' => 'tpr', 'TPR.G28889' => 'tpr', 'TPR.G28899' => 'tpr', 'TPR.G30846' => 'tpr', 'TPR.G5452' => 'tpr', 'TPR.G5713' => 'tpr', 'TPR.G9046' => 'tpr', 'TPR.G9061' => 'tpr', 'TWI09G1075' => 'twi', 'TWI12G0806' => 'twi', 'TWI18G0108' => 'twi', 'TWI53G1361' => 'twi', 'TWI73G0185' => 'twi', 'TWI73G0427' => 'twi', 'unitig_37.g12001' => 'ugi', 'unitig_747.g21660' => 'ugi', 'unitig_748.g7232' => 'ugi', 'unitig_748.g7315' => 'ugi', 'unitig_85.g27262' => 'ugi', 'unitig_92.g28220' => 'ugi', 'vmacro02632' => 'vma', 'vmacro08410' => 'vma', 'vmacro08411' => 'vma', 'vmacro15407' => 'vma', 'VMungo0251G3619' => 'vmu', 'VMungo0720G1204' => 'vmu', 'VMungo0720G1918' => 'vmu', 'VMungo0720G2387' => 'vmu', 'VMungo0720G2961' => 'vmu', 'VMungo1215G2154' => 'vmu', 'VMungo1383G2411' => 'vmu', 'Zm00001eb051130' => 'zma', 'Zm00001eb116830' => 'zma', 'Zm00001eb116850' => 'zma', 'Zm00001eb151740' => 'zma', 'Zm00001eb292360' => 'zma', 'Zm00001eb301640' => 'zma' ), 'gf_id' => 'HOM05D000856', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000856' ), 'data_identifier' => 'HOM05D000856', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000856', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p00010' => 'bna', 'A03p04160' => 'bna', 'A03p17160' => 'bna', 'A04p23370' => 'bna', 'A05p14860' => 'bna', 'A08p37020' => 'bna', 'A09p08050' => 'bna', 'A09p66800' => 'bna', 'A09p67940' => 'bna', 'A10p02680' => 'bna', 'A10p05320' => 'bna', 'Aa31LG1G20560' => 'aar', 'Aa31LG1G20610' => 'aar', 'Aa31LG1G7810' => 'aar', 'Aa31LG5G3590' => 'aar', 'Aa31LG5G6140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3819' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4683' => 'aag', 'Actinidia04480' => 'ach', 'Actinidia05466' => 'ach', 'Actinidia08445' => 'ach', 'Actinidia21170' => 'ach', 'Actinidia24812' => 'ach', 'Actinidia24951' => 'ach', 'Actinidia40088' => 'ach', 'Ah.02g111660' => 'amhyb', 'Ah.11g048900' => 'amhyb', 'Ah.11g049910' => 'amhyb', 'AL1G13870' => 'aly', 'AL1G13880' => 'aly', 'AL1G16760' => 'aly', 'AL390U10020' => 'aly', 'AL4G25520' => 'aly', 'AL6G19890' => 'aly', 'AL6G19900' => 'aly', 'AL6G19910' => 'aly', 'AL8G40100' => 'aly', 'Aqoxy2G03562' => 'aox', 'Aqoxy5G00316' => 'aox', 'Aqoxy5G00926' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1628KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1H403S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2FU6SJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.882I6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8YRY2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YN1SN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AF70II' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZA8L1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F916KL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHRD8H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KTZ8QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S22EMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8M29T' => 'arhy', 'AT1G04270' => 'ath', 'AT1G04280' => 'ath', 'AT1G06750' => 'ath', 'AT1G33850' => 'ath', 'AT2G30630' => 'ath', 'AT5G09490' => 'ath', 'AT5G09500' => 'ath', 'AT5G09510' => 'ath', 'AT5G43640' => 'ath', 'AT5G63070' => 'ath', 'ATR0605G315' => 'atr', 'Atru.chr11.175' => 'acertr', 'Atru.chr11.653' => 'acertr', 'Atru.chr3.1616' => 'acertr', 'Atru.chr4.2230' => 'acertr', 'Atru.chr4.2232' => 'acertr', 'Atru.chr5.1598' => 'acertr', 'Atru.chr5.1600' => 'acertr', 'Atru.chr5.2188' => 'acertr', 'AUR62008326' => 'cqu', 'AUR62011922' => 'cqu', 'AUR62011924' => 'cqu', 'AUR62021771' => 'cqu', 'AUR62032237' => 'cqu', 'AUR62032240' => 'cqu', 'BcaB01g05572' => 'bca', 'BcaB02g10337' => 'bca', 'BcaB04g19944' => 'bca', 'BcaB05g21548' => 'bca', 'BcaB05g21549' => 'bca', 'BcaB05g23227' => 'bca', 'BcaB06g26256' => 'bca', 'BcaB06g26257' => 'bca', 'BcaB06g28379' => 'bca', 'BcaC02g11159' => 'bca', 'BcaC03g13258' => 'bca', 'BcaC03g13259' => 'bca', 'BcaC05g24456' => 'bca', 'BcaC05g24457' => 'bca', 'BcaC07g36922' => 'bca', 'BcaC07g36923' => 'bca', 'BcaC07g42050' => 'bca', 'BcaC07g42176' => 'bca', 'BcaC07g42195' => 'bca', 'BcaC07g42196' => 'bca', 'BcaNung06674' => 'bca', 'BolC2t06351H' => 'bol', 'BolC2t06352H' => 'bol', 'BolC3t12993H' => 'bol', 'BolC4t23525H' => 'bol', 'BolC4t27475H' => 'bol', 'BolC5t29025H' => 'bol', 'BolC5t29026H' => 'bol', 'BolC8t46898H' => 'bol', 'BolC8t46899H' => 'bol', 'BolC8t52630H' => 'bol', 'BolC8t52765H' => 'bol', 'BolC9t53824H' => 'bol', 'BraA03t09760Z' => 'bra', 'BraA03t10990Z' => 'bra', 'BraA05t20413Z' => 'bra', 'BraA08t35602Z' => 'bra', 'BraA09t36458Z' => 'bra', 'BraA09t42018Z' => 'bra', 'BraA09t42129Z' => 'bra', 'BraA10t42536Z' => 'bra', 'BraA10t42537Z' => 'bra', 'C01p10690' => 'bna', 'C02p03890' => 'bna', 'C02p03900' => 'bna', 'C03p04620' => 'bna', 'C04p19870' => 'bna', 'C04p59670' => 'bna', 'C05p02460' => 'bna', 'C05p02470' => 'bna', 'C08p00980' => 'bna', 'C08p00990' => 'bna', 'C08p51030' => 'bna', 'C08p52360' => 'bna', 'C09p09120' => 'bna', 'CAN.G19.15' => 'can', 'CAN.G251.10' => 'can', 'CAN.G251.9' => 'can', 'CAN.G398.24' => 'can', 'CAN.G410.32' => 'can', 'CAN.G881.2' => 'can', 'CANSAT01G3025' => 'cansat', 'CANSAT78G1211' => 'cansat', 'CANSAT78G1218' => 'cansat', 'CANSAT78G1521' => 'cansat', 'CANSAT78G1670' => 'cansat', 'CARHR003600' => 'chi', 'CARHR003610' => 'chi', 'CARHR006290' => 'chi', 'CARHR006430' => 'chi', 'CARHR124110' => 'chi', 'CARHR203870' => 'chi', 'CARHR203880' => 'chi', 'CARHR203890' => 'chi', 'CARHR276880' => 'chi', 'Carub.0001s0346' => 'cru', 'Carub.0001s0347' => 'cru', 'Carub.0001s0607' => 'cru', 'Carub.0003s2768' => 'cru', 'Carub.0003s2769' => 'cru', 'Carub.0004s1178' => 'cru', 'Carub.0006s0806' => 'cru', 'Carub.0006s0807' => 'cru', 'Carub.0006s0808' => 'cru', 'Carub.0008s0501' => 'cru', 'Carub.0008s2379' => 'cru', 'Ca_08655_v3' => 'car', 'Ca_08922_v3' => 'car', 'Ca_08923_v3' => 'car', 'Ca_09119_v3' => 'car', 'Ca_09703_v3' => 'car', 'Ca_09705_v3' => 'car', 'Ca_09835_v3' => 'car', 'Ca_26403_v3' => 'car', 'Ca_30719_v3' => 'car', 'CBR_g17958' => 'cbr', 'CBR_g40516' => 'cbr', 'Cc00_g05350' => 'ccan', 'Cc01_g18690' => 'ccan', 'Cc03_g04830' => 'ccan', 'Cc03_g04850' => 'ccan', 'CDE02G4469' => 'cde', 'CDE06G0883' => 'cde', 'CDE06G1295' => 'cde', 'CDE06G1390' => 'cde', 'CDE07G0584' => 'cde', 'CDE07G1084' => 'cde', 'CDE08G1259' => 'cde', 'Cfa002341' => 'cfa', 'Cfa024337' => 'cfa', 'Ciclev10004749m.g' => 'ccl', 'Ciclev10006127m.g' => 'ccl', 'Ciclev10019720m.g' => 'ccl', 'Ciclev10022652m.g' => 'ccl', 'CiPaw.01G190400' => 'cil', 'CiPaw.01G190500' => 'cil', 'CiPaw.02G116400' => 'cil', 'CiPaw.02G116500' => 'cil', 'CiPaw.04G183000' => 'cil', 'CiPaw.04G183300' => 'cil', 'ClCG05G004610' => 'cla', 'ClCG05G004620' => 'cla', 'ClCG06G006730' => 'cla', 'ClCG06G006740' => 'cla', 'ClCG11G003690' => 'cla', 'COL.COLO4_08276' => 'col', 'COL.COLO4_08277' => 'col', 'COL.COLO4_15787' => 'col', 'COL.COLO4_15789' => 'col', 'Cpa.g.c44815' => 'cpa', 'Cpa.g.sc52.144' => 'cpa', 'Cpa.g.sc58.46' => 'cpa', 'Cpa.g.sc58.47' => 'cpa', 'Cre08.g360900' => 'cre', 'CsaV3_2G013030' => 'csa', 'CsaV3_2G013050' => 'csa', 'CsaV3_2G015620' => 'csa', 'CsaV3_3G012590' => 'csa', 'CsaV3_3G012600' => 'csa', 'CSS0001641' => 'camsi', 'CSS0008310' => 'camsi', 'CSS0013011' => 'camsi', 'CSS0017147' => 'camsi', 'CSS0022970' => 'camsi', 'CSS0025655' => 'camsi', 'CSS0028665' => 'camsi', 'CSS0029117' => 'camsi', 'CSS0032024' => 'camsi', 'CSS0039681' => 'camsi', 'CSS0046516' => 'camsi', 'CSS0050307' => 'camsi', 'DCAR_005871' => 'dca', 'DCAR_007342' => 'dca', 'DCAR_024228' => 'dca', 'DCAR_027277' => 'dca', 'DCAR_030718' => 'dca', 'Dinv20287' => 'din', 'Dinv22461' => 'din', 'Dinv22464' => 'din', 'Dinv29912' => 'din', 'Dinv29913' => 'din', 'Dinv34580' => 'din', 'Dinv34582' => 'din', 'Dinv44632' => 'din', 'Duzib052G0266' => 'dzi', 'Duzib133G0907' => 'dzi', 'Duzib133G1034' => 'dzi', 'Duzib138G0207' => 'dzi', 'Duzib138G0491' => 'dzi', 'Duzib151G0812' => 'dzi', 'Duzib151G1166' => 'dzi', 'Duzib168G0192' => 'dzi', 'Duzib211G0077' => 'dzi', 'Duzib212G0429' => 'dzi', 'Duzib212G0472' => 'dzi', 'ECA233G2617' => 'eca', 'ECA236G4188' => 'eca', 'ECA240G0936' => 'eca', 'ECA240G1129' => 'eca', 'ECA247G0623' => 'eca', 'EL10Ac5g10451' => 'bvu', 'EL10Ac5g10453' => 'bvu', 'EL10Ac5g10894' => 'bvu', 'Eucgr.H00192' => 'egr', 'Eucgr.H00193' => 'egr', 'Eucgr.H00194' => 'egr', 'Eucgr.J01562' => 'egr', 'Eucgr.K03301' => 'egr', 'FAN02G0632' => 'fan', 'FAN05G5378' => 'fan', 'FAN09G3247' => 'fan', 'FAN12G0435' => 'fan', 'FAN12G2426' => 'fan', 'FAN14G1707' => 'fan', 'FAN14G4725' => 'fan', 'FAN15G2071' => 'fan', 'FAN17G3065' => 'fan', 'FAN19G1376' => 'fan', 'FAN20G0354' => 'fan', 'FAN20G2429' => 'fan', 'FAN20G2658' => 'fan', 'FAN24G2343' => 'fan', 'FAN27G2362' => 'fan', 'FAN28G1765' => 'fan', 'FvH4_1g16020' => 'fve', 'FvH4_2g04890' => 'fve', 'FvH4_2g22270' => 'fve', 'FvH4_4g02630' => 'fve', 'FvH4_4g02640' => 'fve', 'FvH4_6g02650' => 'fve', 'Glyma.02G140600' => 'gma', 'Glyma.03G159900' => 'gma', 'Glyma.05G234800' => 'gma', 'Glyma.07G269600' => 'gma', 'Glyma.08G042300' => 'gma', 'Glyma.10G033500' => 'gma', 'Glyma.10G185200' => 'gma', 'Glyma.17G004300' => 'gma', 'Glyma.19G161900' => 'gma', 'Glyma.20G205100' => 'gma', 'Glyma.20G205200' => 'gma', 'Gohir.A01G139101' => 'ghi', 'Gohir.A02G035600' => 'ghi', 'Gohir.A02G117901' => 'ghi', 'Gohir.A07G210100' => 'ghi', 'Gohir.A07G210200' => 'ghi', 'Gohir.A08G061100' => 'ghi', 'Gohir.A09G223000' => 'ghi', 'Gohir.A09G223100' => 'ghi', 'Gohir.A10G113900' => 'ghi', 'Gohir.A10G114000' => 'ghi', 'Gohir.D02G042300' => 'ghi', 'Gohir.D07G216100' => 'ghi', 'Gohir.D07G216200' => 'ghi', 'Gohir.D08G070400' => 'ghi', 'Gohir.D09G225000' => 'ghi', 'Gohir.D09G225100' => 'ghi', 'Gohir.D10G152300' => 'ghi', 'Gohir.D10G153200' => 'ghi', 'Gohir.D11G133701' => 'ghi', 'Gorai.004G074100' => 'gra', 'Gorai.005G046800' => 'gra', 'Gorai.006G246500' => 'gra', 'Gorai.006G246600' => 'gra', 'Gorai.007G142900' => 'gra', 'Gorai.011G171000' => 'gra', 'Gorai.011G171100' => 'gra', 'Gorai.013G104300' => 'gra', 'Gorai.013G104400' => 'gra', 'GSVIVG01000754001' => 'vvi', 'GSVIVG01000756001' => 'vvi', 'GSVIVG01010903001' => 'vvi', 'GSVIVG01017623001' => 'vvi', 'GSVIVG01018113001' => 'vvi', 'GSVIVG01018116001' => 'vvi', 'GSVIVG01018118001' => 'vvi', 'HanXRQChr03g0076211' => 'han', 'HanXRQChr03g0092431' => 'han', 'HanXRQChr03g0092441' => 'han', 'HanXRQChr03g0092591' => 'han', 'HanXRQChr03g0092671' => 'han', 'HanXRQChr03g0092681' => 'han', 'HanXRQChr03g0092691' => 'han', 'HanXRQChr03g0092701' => 'han', 'HanXRQChr03g0092721' => 'han', 'HanXRQChr03g0092731' => 'han', 'HanXRQChr04g0113681' => 'han', 'HanXRQChr10g0281371' => 'han', 'HanXRQChr11g0337141' => 'han', 'HanXRQChr13g0424521' => 'han', 'HanXRQChr13g0424531' => 'han', 'HanXRQChr13g0424541' => 'han', 'HanXRQChr16g0498221' => 'han', 'Haze_04377' => 'cav', 'Haze_11298' => 'cav', 'Haze_24547' => 'cav', 'Haze_24550' => 'cav', 'Haze_26587' => 'cav', 'Hma1.2p1_0650F.1_g195410' => 'hma', 'Hma1.2p1_0893F.1_g233470' => 'hma', 'HPP92_006508' => 'vpl', 'HPP92_024780' => 'vpl', 'Hund02688' => 'sun', 'Hund09380' => 'sun', 'Hund09381' => 'sun', 'Hund09832' => 'sun', 'Hund09833' => 'sun', 'Hund11351' => 'sun', 'Hund11513' => 'sun', 'Lalb_Chr06g0162591' => 'lal', 'Lalb_Chr06g0162601' => 'lal', 'Lalb_Chr06g0169321' => 'lal', 'Lalb_Chr09g0330951' => 'lal', 'Lalb_Chr16g0387631' => 'lal', 'Lalb_Chr21g0306241' => 'lal', 'Lalb_Chr25g0290051' => 'lal', 'Lalb_Chr25g0290061' => 'lal', 'Lalb_Chr25g0290071' => 'lal', 'Lj1g0003876' => 'lja', 'Lj1P1207T36' => 'lonja', 'Lj2C1156G12' => 'lonja', 'Lj3A793G39' => 'lonja', 'Lj3C580G2' => 'lonja', 'Lj3C780G2' => 'lonja', 'Lj3C780T4' => 'lonja', 'Lj3C793G9' => 'lonja', 'Lj4g0012960' => 'lja', 'Lj5g0021252' => 'lja', 'Lj5g0021484' => 'lja', 'Lj5g0024528' => 'lja', 'Lj6A399T12' => 'lonja', 'Lj6A656G65' => 'lonja', 'Lsat_1_v5_gn_3_125500' => 'lsa', 'Lsat_1_v5_gn_3_125540' => 'lsa', 'Lsat_1_v5_gn_5_72701' => 'lsa', 'Lsat_1_v5_gn_8_91560' => 'lsa', 'Lsat_1_v5_gn_9_9640' => 'lsa', 'Manes.01G200600' => 'mes', 'Manes.01G200700' => 'mes', 'Manes.03G168900' => 'mes', 'Manes.03G169000' => 'mes', 'Manes.05G085801' => 'mes', 'Manes.05G086200' => 'mes', 'Manes.15G036700' => 'mes', 'Manes.15G036900' => 'mes', 'Mapoly0004s0172' => 'mpo', 'Mapoly0023s0001' => 'mpo', 'Mapoly0142s0012' => 'mpo', 'MBI01_g32854_MAGBIO' => 'mbi', 'MBI11_g24427_MAGBIO' => 'mbi', 'MBI11_g47319_MAGBIO' => 'mbi', 'MCO01G433' => 'mco', 'MD00G1187800' => 'mdo', 'MD04G1226500' => 'mdo', 'MD05G1203900' => 'mdo', 'MD10G1191100' => 'mdo', 'MD12G1243500' => 'mdo', 'MD13G1207000' => 'mdo', 'MD13G1207100' => 'mdo', 'MD16G1208600' => 'mdo', 'Medtr1g050352' => 'mtr', 'Medtr1g070385' => 'mtr', 'Medtr1g070450' => 'mtr', 'Medtr1g075200' => 'mtr', 'Medtr1g075250' => 'mtr', 'Medtr1g075260' => 'mtr', 'Medtr1g475250' => 'mtr', 'Medtr4g075450' => 'mtr', 'Medtr7g096300' => 'mtr', 'Medtr8g105110' => 'mtr', 'MELO3C006470.2' => 'cme', 'MELO3C006471.2' => 'cme', 'MELO3C020772.2' => 'cme', 'MELO3C026780.2' => 'cme', 'MELO3C026781.2' => 'cme', 'Migut.D00390' => 'egut', 'Migut.G00435' => 'egut', 'Migut.G00436' => 'egut', 'Migut.G00718' => 'egut', 'MSTRG.21891' => 'ama', 'MSTRG.26910' => 'ama', 'MSTRG.4099' => 'ama', 'MSTRG.9925' => 'ama', 'Nitab4.5_0000165g0010' => 'nta', 'Nitab4.5_0000209g0180' => 'nta', 'Nitab4.5_0000244g0440' => 'nta', 'Nitab4.5_0000525g0220' => 'nta', 'Nitab4.5_0001597g0020' => 'nta', 'Nitab4.5_0001878g0040' => 'nta', 'Nitab4.5_0001878g0060' => 'nta', 'Nitab4.5_0002838g0100' => 'nta', 'Nitab4.5_0002838g0120' => 'nta', 'Nitab4.5_0004798g0030' => 'nta', 'Nitab4.5_0005420g0010' => 'nta', 'Nitab4.5_0005507g0010' => 'nta', 'Nitab4.5_0005574g0020' => 'nta', 'Nitab4.5_0005838g0010' => 'nta', 'Nitab4.5_0010580g0020' => 'nta', 'Nn1g02599' => 'nnu', 'Nn1g02608' => 'nnu', 'Nn3g17742' => 'nnu', 'Nn3g19534' => 'nnu', 'Nn3g19535' => 'nnu', 'Oeu008790.1' => 'oeu', 'Oeu008792.1' => 'oeu', 'Oeu032590.1' => 'oeu', 'Oeu035349.1' => 'oeu', 'Oeu049791.1' => 'oeu', 'Os01g0774500' => 'osa', 'Os03g0628800' => 'osa', 'Os03g0798600' => 'osa', 'Os05g0508800' => 'osa', 'Peaxi162Scf00036g02018' => 'pax', 'Peaxi162Scf00578g00032' => 'pax', 'Peaxi162Scf00578g00317' => 'pax', 'Peaxi162Scf00785g00114' => 'pax', 'Peaxi162Scf00813g00119' => 'pax', 'Peaxi162Scf00906g00227' => 'pax', 'PGR004G0875' => 'pgr', 'PGR004G2424' => 'pgr', 'PGR031G1239' => 'pgr', 'PGR031G2474' => 'pgr', 'PGR044G0423' => 'pgr', 'PGSC0003DMG400001128' => 'stu', 'PGSC0003DMG400007336' => 'stu', 'PGSC0003DMG400016318' => 'stu', 'PGSC0003DMG400016319' => 'stu', 'PGSC0003DMG400018074' => 'stu', 'Phvul.001G157700' => 'pvu', 'Phvul.002G148550' => 'pvu', 'Phvul.002G320200' => 'pvu', 'Phvul.003G089200' => 'pvu', 'Phvul.007G126000' => 'pvu', 'Phvul.007G126100' => 'pvu', 'Phvul.007G178000' => 'pvu', 'Phvul.007G178200' => 'pvu', 'Potri.002G043000' => 'ptr', 'Potri.002G043200' => 'ptr', 'Potri.003G123750' => 'ptr', 'Potri.005G055401' => 'ptr', 'Potri.005G219700' => 'ptr', 'Potri.005G220000' => 'ptr', 'Potri.008G161901' => 'ptr', 'Potri.008G162000' => 'ptr', 'Potri.008G162400' => 'ptr', 'Potri.010G076900' => 'ptr', 'Pp3c12_9180' => 'ppa', 'Pp3c13_19770' => 'ppa', 'Pp3c14_22950' => 'ppa', 'Pp3c16_12160' => 'ppa', 'Pp3c27_7820' => 'ppa', 'Pp3c2_3490' => 'ppa', 'Pp3c3_23700' => 'ppa', 'Pp3c3_36520' => 'ppa', 'Pp3c4_15250' => 'ppa', 'PRCOL_00007002' => 'pco', 'Prupe.1G030600' => 'ppe', 'Prupe.1G030700' => 'ppe', 'Prupe.6G345200' => 'ppe', 'Prupe.8G230300' => 'ppe', 'Prupe.8G230500' => 'ppe', 'Psat3g059600' => 'psa', 'Psat5g200920' => 'psa', 'Psat6g056440' => 'psa', 'Psat6g057360' => 'psa', 'Psat6g134120' => 'psa', 'Psat6g134160' => 'psa', 'Psat7g008640' => 'psa', 'Psat7g185240' => 'psa', 'PSO017G1330' => 'pso', 'PSO063G6097' => 'pso', 'PSO170G0835' => 'pso', 'PSO170G2499' => 'pso', 'PSO210G5058' => 'pso', 'PSO210G6154' => 'pso', 'PSO585G0031' => 'pso', 'PSO832G0264' => 'pso', 'PSO832G4288' => 'pso', 'QL03p027355' => 'qlo', 'QL03p027430' => 'qlo', 'QL04p081380' => 'qlo', 'QL06p015642' => 'qlo', 'QL06p015650' => 'qlo', 'QL06p015686' => 'qlo', 'QL12p042927' => 'qlo', 'QL93p1863_0035' => 'qlo', 'RcHm_v2.0_Chr3g0450581' => 'rch', 'RcHm_v2.0_Chr4g0390371' => 'rch', 'RcHm_v2.0_Chr4g0390381' => 'rch', 'RcHm_v2.0_Chr4g0390491' => 'rch', 'RcHm_v2.0_Chr4g0390501' => 'rch', 'RcHm_v2.0_Chr6g0289231' => 'rch', 'Rhsim04G0190400' => 'rsi', 'Rhsim04G0190500' => 'rsi', 'Rhsim04G0190600' => 'rsi', 'Rhsim13G0031400' => 'rsi', 'Rhsim13G0165600' => 'rsi', 'RhsimUnG0114600' => 'rsi', 'RhsimUnG0114700' => 'rsi', 'Sabra02G0034800' => 'sbr', 'Sabra02G0035100' => 'sbr', 'Sabra05G0168600' => 'sbr', 'Sabra05G0168800' => 'sbr', 'Sabra08G0123700' => 'sbr', 'Sabra10G0031900' => 'sbr', 'Sabra13G0039000' => 'sbr', 'SalBow2G0782' => 'sbo', 'SalBow2G1403' => 'sbo', 'SalBow4G0074' => 'sbo', 'SalBow4G2635' => 'sbo', 'SalBow5G3010' => 'sbo', 'Sc05g0000870' => 'sci', 'Sc05g0000890' => 'sci', 'Sc13g0005000' => 'sci', 'Sc13g0005030' => 'sci', 'Sc19g0003790' => 'sci', 'Sc19g0003800' => 'sci', 'Sed0003467' => 'sed', 'Sed0009355' => 'sed', 'Sed0009894' => 'sed', 'Sed0011972' => 'sed', 'Sed0021483' => 'sed', 'Sed0021750' => 'sed', 'Sed0026279' => 'sed', 'SEGI_05312' => 'sgi', 'SEGI_10112' => 'sgi', 'SEGI_15835' => 'sgi', 'SEGI_30386' => 'sgi', 'SEGI_34122' => 'sgi', 'SEGI_35063' => 'sgi', 'SGA_v2.0_scaffold101G29794' => 'sas', 'SGA_v2.0_scaffold1G00573' => 'sas', 'SGA_v2.0_scaffold79G25637' => 'sas', 'SGA_v2.0_scaffold88G27283' => 'sas', 'SGA_v2.0_scaffold88G27285' => 'sas', 'SGA_v2.0_scaffold88G27331' => 'sas', 'SHI09937' => 'shi', 'SMO119G0302' => 'smo', 'SMO137G0231' => 'smo', 'SMO367G1151' => 'smo', 'Solyc02g082000.3' => 'sly', 'Solyc06g031670.3' => 'sly', 'Solyc06g053810.3' => 'sly', 'Solyc07g025457.1' => 'sly', 'Solyc08g059740.1' => 'sly', 'Solyc08g059750.3' => 'sly', 'Solyc09g083370.3' => 'sly', 'Solyc12g038950.3' => 'sly', 'Sopen02g026630' => 'spe', 'Sopen06g018930' => 'spe', 'Sopen06g018940' => 'spe', 'Sopen08g009460' => 'spe', 'Sopen09g032290' => 'spe', 'Sp1g03080' => 'spa', 'Sp1g03090' => 'spa', 'Sp1g05480' => 'spa', 'Sp2g07860' => 'spa', 'Sp2g08430' => 'spa', 'Sp2g08440' => 'spa', 'Sp2g26200' => 'spa', 'Sp4g13170' => 'spa', 'Sp6g33840' => 'spa', 'SpUn1204_0010' => 'spa', 'TAR365G0908' => 'tar', 'TAR381G1270' => 'tar', 'TAR381G1651' => 'tar', 'TAR625G1131' => 'tar', 'TAR633G0962' => 'tar', 'TAR633G1729' => 'tar', 'TAR633G1864' => 'tar', 'TAR636G0221' => 'tar', 'TAR636G0314' => 'tar', 'TAR636G3202' => 'tar', 'THA.LOC104800805' => 'tha', 'THA.LOC104801096' => 'tha', 'THA.LOC104801555' => 'tha', 'THA.LOC104808491' => 'tha', 'THA.LOC104808595' => 'tha', 'THA.LOC104815985' => 'tha', 'THA.LOC104822250' => 'tha', 'THA.LOC104826071' => 'tha', 'Thecc.01G265200' => 'tca', 'Thecc.01G265300' => 'tca', 'Thecc.01G265700' => 'tca', 'Thecc.03G109100' => 'tca', 'Thecc.04G245900' => 'tca', 'Thecc.04G246000' => 'tca', 'Thhalv10003334m.g' => 'esa', 'Thhalv10005508m.g' => 'esa', 'Thhalv10005643m.g' => 'esa', 'Thhalv10007316m.g' => 'esa', 'Thhalv10009006m.g' => 'esa', 'Thhalv10009309m.g' => 'esa', 'Thhalv10014917m.g' => 'esa', 'Thhalv10014919m.g' => 'esa', 'Thhalv10015393m.g' => 'esa', 'Thhalv10016515m.g' => 'esa', 'Thhalv10029242m.g' => 'esa', 'TPR.G16654' => 'tpr', 'TPR.G20589' => 'tpr', 'TPR.G23029' => 'tpr', 'TPR.G27731' => 'tpr', 'TPR.G28889' => 'tpr', 'TPR.G28899' => 'tpr', 'TPR.G30846' => 'tpr', 'TPR.G5452' => 'tpr', 'TPR.G5713' => 'tpr', 'TPR.G9046' => 'tpr', 'TPR.G9061' => 'tpr', 'TWI09G1075' => 'twi', 'TWI12G0806' => 'twi', 'TWI18G0108' => 'twi', 'TWI53G1361' => 'twi', 'TWI73G0185' => 'twi', 'TWI73G0427' => 'twi', 'unitig_37.g12001' => 'ugi', 'unitig_747.g21660' => 'ugi', 'unitig_748.g7232' => 'ugi', 'unitig_748.g7315' => 'ugi', 'unitig_85.g27262' => 'ugi', 'unitig_92.g28220' => 'ugi', 'vmacro02632' => 'vma', 'vmacro08410' => 'vma', 'vmacro08411' => 'vma', 'vmacro15407' => 'vma', 'VMungo0251G3619' => 'vmu', 'VMungo0720G1204' => 'vmu', 'VMungo0720G1918' => 'vmu', 'VMungo0720G2387' => 'vmu', 'VMungo0720G2961' => 'vmu', 'VMungo1215G2154' => 'vmu', 'VMungo1383G2411' => 'vmu', 'Zm00001eb051130' => 'zma', 'Zm00001eb116830' => 'zma', 'Zm00001eb116850' => 'zma', 'Zm00001eb151740' => 'zma', 'Zm00001eb292360' => 'zma', 'Zm00001eb301640' => 'zma' ) $gf_id = 'HOM05D000856' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000856' ) $data_identifier = 'HOM05D000856' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 13, 'ath' => (int) 10, 'atr' => (int) 1, 'acertr' => (int) 8, 'cqu' => (int) 6, 'bca' => (int) 21, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 11, 'car' => (int) 9, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 8, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 5, 'fan' => (int) 16, 'fve' => (int) 6, 'gma' => (int) 11, 'ghi' => (int) 19, 'gra' => (int) 9, 'vvi' => (int) 7, 'han' => (int) 17, 'cav' => (int) 5, 'hma' => (int) 2, 'vpl' => (int) 2, 'sun' => (int) 7, 'lal' => (int) 9, 'lja' => (int) 5, 'lonja' => (int) 9, 'lsa' => (int) 5, 'mes' => (int) 8, 'mpo' => (int) 3, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 10, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 15, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 9, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 9, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 6, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 5, 'spa' => (int) 10, 'tar' => (int) 10, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 11, 'tpr' => (int) 11, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 4, 'vmu' => (int) 7, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb301640' $species_info = array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ) $local_species = 'osa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000856', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p00010' => 'bna', 'A03p04160' => 'bna', 'A03p17160' => 'bna', 'A04p23370' => 'bna', 'A05p14860' => 'bna', 'A08p37020' => 'bna', 'A09p08050' => 'bna', 'A09p66800' => 'bna', 'A09p67940' => 'bna', 'A10p02680' => 'bna', 'A10p05320' => 'bna', 'Aa31LG1G20560' => 'aar', 'Aa31LG1G20610' => 'aar', 'Aa31LG1G7810' => 'aar', 'Aa31LG5G3590' => 'aar', 'Aa31LG5G6140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3819' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4683' => 'aag', 'Actinidia04480' => 'ach', 'Actinidia05466' => 'ach', 'Actinidia08445' => 'ach', 'Actinidia21170' => 'ach', 'Actinidia24812' => 'ach', 'Actinidia24951' => 'ach', 'Actinidia40088' => 'ach', 'Ah.02g111660' => 'amhyb', 'Ah.11g048900' => 'amhyb', 'Ah.11g049910' => 'amhyb', 'AL1G13870' => 'aly', 'AL1G13880' => 'aly', 'AL1G16760' => 'aly', 'AL390U10020' => 'aly', 'AL4G25520' => 'aly', 'AL6G19890' => 'aly', 'AL6G19900' => 'aly', 'AL6G19910' => 'aly', 'AL8G40100' => 'aly', 'Aqoxy2G03562' => 'aox', 'Aqoxy5G00316' => 'aox', 'Aqoxy5G00926' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1628KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1H403S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2FU6SJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.882I6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8YRY2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YN1SN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AF70II' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZA8L1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F916KL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHRD8H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KTZ8QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S22EMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8M29T' => 'arhy', 'AT1G04270' => 'ath', 'AT1G04280' => 'ath', 'AT1G06750' => 'ath', 'AT1G33850' => 'ath', 'AT2G30630' => 'ath', 'AT5G09490' => 'ath', 'AT5G09500' => 'ath', 'AT5G09510' => 'ath', 'AT5G43640' => 'ath', 'AT5G63070' => 'ath', 'ATR0605G315' => 'atr', 'Atru.chr11.175' => 'acertr', 'Atru.chr11.653' => 'acertr', 'Atru.chr3.1616' => 'acertr', 'Atru.chr4.2230' => 'acertr', 'Atru.chr4.2232' => 'acertr', 'Atru.chr5.1598' => 'acertr', 'Atru.chr5.1600' => 'acertr', 'Atru.chr5.2188' => 'acertr', 'AUR62008326' => 'cqu', 'AUR62011922' => 'cqu', 'AUR62011924' => 'cqu', 'AUR62021771' => 'cqu', 'AUR62032237' => 'cqu', 'AUR62032240' => 'cqu', 'BcaB01g05572' => 'bca', 'BcaB02g10337' => 'bca', 'BcaB04g19944' => 'bca', 'BcaB05g21548' => 'bca', 'BcaB05g21549' => 'bca', 'BcaB05g23227' => 'bca', 'BcaB06g26256' => 'bca', 'BcaB06g26257' => 'bca', 'BcaB06g28379' => 'bca', 'BcaC02g11159' => 'bca', 'BcaC03g13258' => 'bca', 'BcaC03g13259' => 'bca', 'BcaC05g24456' => 'bca', 'BcaC05g24457' => 'bca', 'BcaC07g36922' => 'bca', 'BcaC07g36923' => 'bca', 'BcaC07g42050' => 'bca', 'BcaC07g42176' => 'bca', 'BcaC07g42195' => 'bca', 'BcaC07g42196' => 'bca', 'BcaNung06674' => 'bca', 'BolC2t06351H' => 'bol', 'BolC2t06352H' => 'bol', 'BolC3t12993H' => 'bol', 'BolC4t23525H' => 'bol', 'BolC4t27475H' => 'bol', 'BolC5t29025H' => 'bol', 'BolC5t29026H' => 'bol', 'BolC8t46898H' => 'bol', 'BolC8t46899H' => 'bol', 'BolC8t52630H' => 'bol', 'BolC8t52765H' => 'bol', 'BolC9t53824H' => 'bol', 'BraA03t09760Z' => 'bra', 'BraA03t10990Z' => 'bra', 'BraA05t20413Z' => 'bra', 'BraA08t35602Z' => 'bra', 'BraA09t36458Z' => 'bra', 'BraA09t42018Z' => 'bra', 'BraA09t42129Z' => 'bra', 'BraA10t42536Z' => 'bra', 'BraA10t42537Z' => 'bra', 'C01p10690' => 'bna', 'C02p03890' => 'bna', 'C02p03900' => 'bna', 'C03p04620' => 'bna', 'C04p19870' => 'bna', 'C04p59670' => 'bna', 'C05p02460' => 'bna', 'C05p02470' => 'bna', 'C08p00980' => 'bna', 'C08p00990' => 'bna', 'C08p51030' => 'bna', 'C08p52360' => 'bna', 'C09p09120' => 'bna', 'CAN.G19.15' => 'can', 'CAN.G251.10' => 'can', 'CAN.G251.9' => 'can', 'CAN.G398.24' => 'can', 'CAN.G410.32' => 'can', 'CAN.G881.2' => 'can', 'CANSAT01G3025' => 'cansat', 'CANSAT78G1211' => 'cansat', 'CANSAT78G1218' => 'cansat', 'CANSAT78G1521' => 'cansat', 'CANSAT78G1670' => 'cansat', 'CARHR003600' => 'chi', 'CARHR003610' => 'chi', 'CARHR006290' => 'chi', 'CARHR006430' => 'chi', 'CARHR124110' => 'chi', 'CARHR203870' => 'chi', 'CARHR203880' => 'chi', 'CARHR203890' => 'chi', 'CARHR276880' => 'chi', 'Carub.0001s0346' => 'cru', 'Carub.0001s0347' => 'cru', 'Carub.0001s0607' => 'cru', 'Carub.0003s2768' => 'cru', 'Carub.0003s2769' => 'cru', 'Carub.0004s1178' => 'cru', 'Carub.0006s0806' => 'cru', 'Carub.0006s0807' => 'cru', 'Carub.0006s0808' => 'cru', 'Carub.0008s0501' => 'cru', 'Carub.0008s2379' => 'cru', 'Ca_08655_v3' => 'car', 'Ca_08922_v3' => 'car', 'Ca_08923_v3' => 'car', 'Ca_09119_v3' => 'car', 'Ca_09703_v3' => 'car', 'Ca_09705_v3' => 'car', 'Ca_09835_v3' => 'car', 'Ca_26403_v3' => 'car', 'Ca_30719_v3' => 'car', 'CBR_g17958' => 'cbr', 'CBR_g40516' => 'cbr', 'Cc00_g05350' => 'ccan', 'Cc01_g18690' => 'ccan', 'Cc03_g04830' => 'ccan', 'Cc03_g04850' => 'ccan', 'CDE02G4469' => 'cde', 'CDE06G0883' => 'cde', 'CDE06G1295' => 'cde', 'CDE06G1390' => 'cde', 'CDE07G0584' => 'cde', 'CDE07G1084' => 'cde', 'CDE08G1259' => 'cde', 'Cfa002341' => 'cfa', 'Cfa024337' => 'cfa', 'Ciclev10004749m.g' => 'ccl', 'Ciclev10006127m.g' => 'ccl', 'Ciclev10019720m.g' => 'ccl', 'Ciclev10022652m.g' => 'ccl', 'CiPaw.01G190400' => 'cil', 'CiPaw.01G190500' => 'cil', 'CiPaw.02G116400' => 'cil', 'CiPaw.02G116500' => 'cil', 'CiPaw.04G183000' => 'cil', 'CiPaw.04G183300' => 'cil', 'ClCG05G004610' => 'cla', 'ClCG05G004620' => 'cla', 'ClCG06G006730' => 'cla', 'ClCG06G006740' => 'cla', 'ClCG11G003690' => 'cla', 'COL.COLO4_08276' => 'col', 'COL.COLO4_08277' => 'col', 'COL.COLO4_15787' => 'col', 'COL.COLO4_15789' => 'col', 'Cpa.g.c44815' => 'cpa', 'Cpa.g.sc52.144' => 'cpa', 'Cpa.g.sc58.46' => 'cpa', 'Cpa.g.sc58.47' => 'cpa', 'Cre08.g360900' => 'cre', 'CsaV3_2G013030' => 'csa', 'CsaV3_2G013050' => 'csa', 'CsaV3_2G015620' => 'csa', 'CsaV3_3G012590' => 'csa', 'CsaV3_3G012600' => 'csa', 'CSS0001641' => 'camsi', 'CSS0008310' => 'camsi', 'CSS0013011' => 'camsi', 'CSS0017147' => 'camsi', 'CSS0022970' => 'camsi', 'CSS0025655' => 'camsi', 'CSS0028665' => 'camsi', 'CSS0029117' => 'camsi', 'CSS0032024' => 'camsi', 'CSS0039681' => 'camsi', 'CSS0046516' => 'camsi', 'CSS0050307' => 'camsi', 'DCAR_005871' => 'dca', 'DCAR_007342' => 'dca', 'DCAR_024228' => 'dca', 'DCAR_027277' => 'dca', 'DCAR_030718' => 'dca', 'Dinv20287' => 'din', 'Dinv22461' => 'din', 'Dinv22464' => 'din', 'Dinv29912' => 'din', 'Dinv29913' => 'din', 'Dinv34580' => 'din', 'Dinv34582' => 'din', 'Dinv44632' => 'din', 'Duzib052G0266' => 'dzi', 'Duzib133G0907' => 'dzi', 'Duzib133G1034' => 'dzi', 'Duzib138G0207' => 'dzi', 'Duzib138G0491' => 'dzi', 'Duzib151G0812' => 'dzi', 'Duzib151G1166' => 'dzi', 'Duzib168G0192' => 'dzi', 'Duzib211G0077' => 'dzi', 'Duzib212G0429' => 'dzi', 'Duzib212G0472' => 'dzi', 'ECA233G2617' => 'eca', 'ECA236G4188' => 'eca', 'ECA240G0936' => 'eca', 'ECA240G1129' => 'eca', 'ECA247G0623' => 'eca', 'EL10Ac5g10451' => 'bvu', 'EL10Ac5g10453' => 'bvu', 'EL10Ac5g10894' => 'bvu', 'Eucgr.H00192' => 'egr', 'Eucgr.H00193' => 'egr', 'Eucgr.H00194' => 'egr', 'Eucgr.J01562' => 'egr', 'Eucgr.K03301' => 'egr', 'FAN02G0632' => 'fan', 'FAN05G5378' => 'fan', 'FAN09G3247' => 'fan', 'FAN12G0435' => 'fan', 'FAN12G2426' => 'fan', 'FAN14G1707' => 'fan', 'FAN14G4725' => 'fan', 'FAN15G2071' => 'fan', 'FAN17G3065' => 'fan', 'FAN19G1376' => 'fan', 'FAN20G0354' => 'fan', 'FAN20G2429' => 'fan', 'FAN20G2658' => 'fan', 'FAN24G2343' => 'fan', 'FAN27G2362' => 'fan', 'FAN28G1765' => 'fan', 'FvH4_1g16020' => 'fve', 'FvH4_2g04890' => 'fve', 'FvH4_2g22270' => 'fve', 'FvH4_4g02630' => 'fve', 'FvH4_4g02640' => 'fve', 'FvH4_6g02650' => 'fve', 'Glyma.02G140600' => 'gma', 'Glyma.03G159900' => 'gma', 'Glyma.05G234800' => 'gma', 'Glyma.07G269600' => 'gma', 'Glyma.08G042300' => 'gma', 'Glyma.10G033500' => 'gma', 'Glyma.10G185200' => 'gma', 'Glyma.17G004300' => 'gma', 'Glyma.19G161900' => 'gma', 'Glyma.20G205100' => 'gma', 'Glyma.20G205200' => 'gma', 'Gohir.A01G139101' => 'ghi', 'Gohir.A02G035600' => 'ghi', 'Gohir.A02G117901' => 'ghi', 'Gohir.A07G210100' => 'ghi', 'Gohir.A07G210200' => 'ghi', 'Gohir.A08G061100' => 'ghi', 'Gohir.A09G223000' => 'ghi', 'Gohir.A09G223100' => 'ghi', 'Gohir.A10G113900' => 'ghi', 'Gohir.A10G114000' => 'ghi', 'Gohir.D02G042300' => 'ghi', 'Gohir.D07G216100' => 'ghi', 'Gohir.D07G216200' => 'ghi', 'Gohir.D08G070400' => 'ghi', 'Gohir.D09G225000' => 'ghi', 'Gohir.D09G225100' => 'ghi', 'Gohir.D10G152300' => 'ghi', 'Gohir.D10G153200' => 'ghi', 'Gohir.D11G133701' => 'ghi', 'Gorai.004G074100' => 'gra', 'Gorai.005G046800' => 'gra', 'Gorai.006G246500' => 'gra', 'Gorai.006G246600' => 'gra', 'Gorai.007G142900' => 'gra', 'Gorai.011G171000' => 'gra', 'Gorai.011G171100' => 'gra', 'Gorai.013G104300' => 'gra', 'Gorai.013G104400' => 'gra', 'GSVIVG01000754001' => 'vvi', 'GSVIVG01000756001' => 'vvi', 'GSVIVG01010903001' => 'vvi', 'GSVIVG01017623001' => 'vvi', 'GSVIVG01018113001' => 'vvi', 'GSVIVG01018116001' => 'vvi', 'GSVIVG01018118001' => 'vvi', 'HanXRQChr03g0076211' => 'han', 'HanXRQChr03g0092431' => 'han', 'HanXRQChr03g0092441' => 'han', 'HanXRQChr03g0092591' => 'han', 'HanXRQChr03g0092671' => 'han', 'HanXRQChr03g0092681' => 'han', 'HanXRQChr03g0092691' => 'han', 'HanXRQChr03g0092701' => 'han', 'HanXRQChr03g0092721' => 'han', 'HanXRQChr03g0092731' => 'han', 'HanXRQChr04g0113681' => 'han', 'HanXRQChr10g0281371' => 'han', 'HanXRQChr11g0337141' => 'han', 'HanXRQChr13g0424521' => 'han', 'HanXRQChr13g0424531' => 'han', 'HanXRQChr13g0424541' => 'han', 'HanXRQChr16g0498221' => 'han', 'Haze_04377' => 'cav', 'Haze_11298' => 'cav', 'Haze_24547' => 'cav', 'Haze_24550' => 'cav', 'Haze_26587' => 'cav', 'Hma1.2p1_0650F.1_g195410' => 'hma', 'Hma1.2p1_0893F.1_g233470' => 'hma', 'HPP92_006508' => 'vpl', 'HPP92_024780' => 'vpl', 'Hund02688' => 'sun', 'Hund09380' => 'sun', 'Hund09381' => 'sun', 'Hund09832' => 'sun', 'Hund09833' => 'sun', 'Hund11351' => 'sun', 'Hund11513' => 'sun', 'Lalb_Chr06g0162591' => 'lal', 'Lalb_Chr06g0162601' => 'lal', 'Lalb_Chr06g0169321' => 'lal', 'Lalb_Chr09g0330951' => 'lal', 'Lalb_Chr16g0387631' => 'lal', 'Lalb_Chr21g0306241' => 'lal', 'Lalb_Chr25g0290051' => 'lal', 'Lalb_Chr25g0290061' => 'lal', 'Lalb_Chr25g0290071' => 'lal', 'Lj1g0003876' => 'lja', 'Lj1P1207T36' => 'lonja', 'Lj2C1156G12' => 'lonja', 'Lj3A793G39' => 'lonja', 'Lj3C580G2' => 'lonja', 'Lj3C780G2' => 'lonja', 'Lj3C780T4' => 'lonja', 'Lj3C793G9' => 'lonja', 'Lj4g0012960' => 'lja', 'Lj5g0021252' => 'lja', 'Lj5g0021484' => 'lja', 'Lj5g0024528' => 'lja', 'Lj6A399T12' => 'lonja', 'Lj6A656G65' => 'lonja', 'Lsat_1_v5_gn_3_125500' => 'lsa', 'Lsat_1_v5_gn_3_125540' => 'lsa', 'Lsat_1_v5_gn_5_72701' => 'lsa', 'Lsat_1_v5_gn_8_91560' => 'lsa', 'Lsat_1_v5_gn_9_9640' => 'lsa', 'Manes.01G200600' => 'mes', 'Manes.01G200700' => 'mes', 'Manes.03G168900' => 'mes', 'Manes.03G169000' => 'mes', 'Manes.05G085801' => 'mes', 'Manes.05G086200' => 'mes', 'Manes.15G036700' => 'mes', 'Manes.15G036900' => 'mes', 'Mapoly0004s0172' => 'mpo', 'Mapoly0023s0001' => 'mpo', 'Mapoly0142s0012' => 'mpo', 'MBI01_g32854_MAGBIO' => 'mbi', 'MBI11_g24427_MAGBIO' => 'mbi', 'MBI11_g47319_MAGBIO' => 'mbi', 'MCO01G433' => 'mco', 'MD00G1187800' => 'mdo', 'MD04G1226500' => 'mdo', 'MD05G1203900' => 'mdo', 'MD10G1191100' => 'mdo', 'MD12G1243500' => 'mdo', 'MD13G1207000' => 'mdo', 'MD13G1207100' => 'mdo', 'MD16G1208600' => 'mdo', 'Medtr1g050352' => 'mtr', 'Medtr1g070385' => 'mtr', 'Medtr1g070450' => 'mtr', 'Medtr1g075200' => 'mtr', 'Medtr1g075250' => 'mtr', 'Medtr1g075260' => 'mtr', 'Medtr1g475250' => 'mtr', 'Medtr4g075450' => 'mtr', 'Medtr7g096300' => 'mtr', 'Medtr8g105110' => 'mtr', 'MELO3C006470.2' => 'cme', 'MELO3C006471.2' => 'cme', 'MELO3C020772.2' => 'cme', 'MELO3C026780.2' => 'cme', 'MELO3C026781.2' => 'cme', 'Migut.D00390' => 'egut', 'Migut.G00435' => 'egut', 'Migut.G00436' => 'egut', 'Migut.G00718' => 'egut', 'MSTRG.21891' => 'ama', 'MSTRG.26910' => 'ama', 'MSTRG.4099' => 'ama', 'MSTRG.9925' => 'ama', 'Nitab4.5_0000165g0010' => 'nta', 'Nitab4.5_0000209g0180' => 'nta', 'Nitab4.5_0000244g0440' => 'nta', 'Nitab4.5_0000525g0220' => 'nta', 'Nitab4.5_0001597g0020' => 'nta', 'Nitab4.5_0001878g0040' => 'nta', 'Nitab4.5_0001878g0060' => 'nta', 'Nitab4.5_0002838g0100' => 'nta', 'Nitab4.5_0002838g0120' => 'nta', 'Nitab4.5_0004798g0030' => 'nta', 'Nitab4.5_0005420g0010' => 'nta', 'Nitab4.5_0005507g0010' => 'nta', 'Nitab4.5_0005574g0020' => 'nta', 'Nitab4.5_0005838g0010' => 'nta', 'Nitab4.5_0010580g0020' => 'nta', 'Nn1g02599' => 'nnu', 'Nn1g02608' => 'nnu', 'Nn3g17742' => 'nnu', 'Nn3g19534' => 'nnu', 'Nn3g19535' => 'nnu', 'Oeu008790.1' => 'oeu', 'Oeu008792.1' => 'oeu', 'Oeu032590.1' => 'oeu', 'Oeu035349.1' => 'oeu', 'Oeu049791.1' => 'oeu', 'Os01g0774500' => 'osa', 'Os03g0628800' => 'osa', 'Os03g0798600' => 'osa', 'Os05g0508800' => 'osa', 'Peaxi162Scf00036g02018' => 'pax', 'Peaxi162Scf00578g00032' => 'pax', 'Peaxi162Scf00578g00317' => 'pax', 'Peaxi162Scf00785g00114' => 'pax', 'Peaxi162Scf00813g00119' => 'pax', 'Peaxi162Scf00906g00227' => 'pax', 'PGR004G0875' => 'pgr', 'PGR004G2424' => 'pgr', 'PGR031G1239' => 'pgr', 'PGR031G2474' => 'pgr', 'PGR044G0423' => 'pgr', 'PGSC0003DMG400001128' => 'stu', 'PGSC0003DMG400007336' => 'stu', 'PGSC0003DMG400016318' => 'stu', 'PGSC0003DMG400016319' => 'stu', 'PGSC0003DMG400018074' => 'stu', 'Phvul.001G157700' => 'pvu', 'Phvul.002G148550' => 'pvu', 'Phvul.002G320200' => 'pvu', 'Phvul.003G089200' => 'pvu', 'Phvul.007G126000' => 'pvu', 'Phvul.007G126100' => 'pvu', 'Phvul.007G178000' => 'pvu', 'Phvul.007G178200' => 'pvu', 'Potri.002G043000' => 'ptr', 'Potri.002G043200' => 'ptr', 'Potri.003G123750' => 'ptr', 'Potri.005G055401' => 'ptr', 'Potri.005G219700' => 'ptr', 'Potri.005G220000' => 'ptr', 'Potri.008G161901' => 'ptr', 'Potri.008G162000' => 'ptr', 'Potri.008G162400' => 'ptr', 'Potri.010G076900' => 'ptr', 'Pp3c12_9180' => 'ppa', 'Pp3c13_19770' => 'ppa', 'Pp3c14_22950' => 'ppa', 'Pp3c16_12160' => 'ppa', 'Pp3c27_7820' => 'ppa', 'Pp3c2_3490' => 'ppa', 'Pp3c3_23700' => 'ppa', 'Pp3c3_36520' => 'ppa', 'Pp3c4_15250' => 'ppa', 'PRCOL_00007002' => 'pco', 'Prupe.1G030600' => 'ppe', 'Prupe.1G030700' => 'ppe', 'Prupe.6G345200' => 'ppe', 'Prupe.8G230300' => 'ppe', 'Prupe.8G230500' => 'ppe', 'Psat3g059600' => 'psa', 'Psat5g200920' => 'psa', 'Psat6g056440' => 'psa', 'Psat6g057360' => 'psa', 'Psat6g134120' => 'psa', 'Psat6g134160' => 'psa', 'Psat7g008640' => 'psa', 'Psat7g185240' => 'psa', 'PSO017G1330' => 'pso', 'PSO063G6097' => 'pso', 'PSO170G0835' => 'pso', 'PSO170G2499' => 'pso', 'PSO210G5058' => 'pso', 'PSO210G6154' => 'pso', 'PSO585G0031' => 'pso', 'PSO832G0264' => 'pso', 'PSO832G4288' => 'pso', 'QL03p027355' => 'qlo', 'QL03p027430' => 'qlo', 'QL04p081380' => 'qlo', 'QL06p015642' => 'qlo', 'QL06p015650' => 'qlo', 'QL06p015686' => 'qlo', 'QL12p042927' => 'qlo', 'QL93p1863_0035' => 'qlo', 'RcHm_v2.0_Chr3g0450581' => 'rch', 'RcHm_v2.0_Chr4g0390371' => 'rch', 'RcHm_v2.0_Chr4g0390381' => 'rch', 'RcHm_v2.0_Chr4g0390491' => 'rch', 'RcHm_v2.0_Chr4g0390501' => 'rch', 'RcHm_v2.0_Chr6g0289231' => 'rch', 'Rhsim04G0190400' => 'rsi', 'Rhsim04G0190500' => 'rsi', 'Rhsim04G0190600' => 'rsi', 'Rhsim13G0031400' => 'rsi', 'Rhsim13G0165600' => 'rsi', 'RhsimUnG0114600' => 'rsi', 'RhsimUnG0114700' => 'rsi', 'Sabra02G0034800' => 'sbr', 'Sabra02G0035100' => 'sbr', 'Sabra05G0168600' => 'sbr', 'Sabra05G0168800' => 'sbr', 'Sabra08G0123700' => 'sbr', 'Sabra10G0031900' => 'sbr', 'Sabra13G0039000' => 'sbr', 'SalBow2G0782' => 'sbo', 'SalBow2G1403' => 'sbo', 'SalBow4G0074' => 'sbo', 'SalBow4G2635' => 'sbo', 'SalBow5G3010' => 'sbo', 'Sc05g0000870' => 'sci', 'Sc05g0000890' => 'sci', 'Sc13g0005000' => 'sci', 'Sc13g0005030' => 'sci', 'Sc19g0003790' => 'sci', 'Sc19g0003800' => 'sci', 'Sed0003467' => 'sed', 'Sed0009355' => 'sed', 'Sed0009894' => 'sed', 'Sed0011972' => 'sed', 'Sed0021483' => 'sed', 'Sed0021750' => 'sed', 'Sed0026279' => 'sed', 'SEGI_05312' => 'sgi', 'SEGI_10112' => 'sgi', 'SEGI_15835' => 'sgi', 'SEGI_30386' => 'sgi', 'SEGI_34122' => 'sgi', 'SEGI_35063' => 'sgi', 'SGA_v2.0_scaffold101G29794' => 'sas', 'SGA_v2.0_scaffold1G00573' => 'sas', 'SGA_v2.0_scaffold79G25637' => 'sas', 'SGA_v2.0_scaffold88G27283' => 'sas', 'SGA_v2.0_scaffold88G27285' => 'sas', 'SGA_v2.0_scaffold88G27331' => 'sas', 'SHI09937' => 'shi', 'SMO119G0302' => 'smo', 'SMO137G0231' => 'smo', 'SMO367G1151' => 'smo', 'Solyc02g082000.3' => 'sly', 'Solyc06g031670.3' => 'sly', 'Solyc06g053810.3' => 'sly', 'Solyc07g025457.1' => 'sly', 'Solyc08g059740.1' => 'sly', 'Solyc08g059750.3' => 'sly', 'Solyc09g083370.3' => 'sly', 'Solyc12g038950.3' => 'sly', 'Sopen02g026630' => 'spe', 'Sopen06g018930' => 'spe', 'Sopen06g018940' => 'spe', 'Sopen08g009460' => 'spe', 'Sopen09g032290' => 'spe', 'Sp1g03080' => 'spa', 'Sp1g03090' => 'spa', 'Sp1g05480' => 'spa', 'Sp2g07860' => 'spa', 'Sp2g08430' => 'spa', 'Sp2g08440' => 'spa', 'Sp2g26200' => 'spa', 'Sp4g13170' => 'spa', 'Sp6g33840' => 'spa', 'SpUn1204_0010' => 'spa', 'TAR365G0908' => 'tar', 'TAR381G1270' => 'tar', 'TAR381G1651' => 'tar', 'TAR625G1131' => 'tar', 'TAR633G0962' => 'tar', 'TAR633G1729' => 'tar', 'TAR633G1864' => 'tar', 'TAR636G0221' => 'tar', 'TAR636G0314' => 'tar', 'TAR636G3202' => 'tar', 'THA.LOC104800805' => 'tha', 'THA.LOC104801096' => 'tha', 'THA.LOC104801555' => 'tha', 'THA.LOC104808491' => 'tha', 'THA.LOC104808595' => 'tha', 'THA.LOC104815985' => 'tha', 'THA.LOC104822250' => 'tha', 'THA.LOC104826071' => 'tha', 'Thecc.01G265200' => 'tca', 'Thecc.01G265300' => 'tca', 'Thecc.01G265700' => 'tca', 'Thecc.03G109100' => 'tca', 'Thecc.04G245900' => 'tca', 'Thecc.04G246000' => 'tca', 'Thhalv10003334m.g' => 'esa', 'Thhalv10005508m.g' => 'esa', 'Thhalv10005643m.g' => 'esa', 'Thhalv10007316m.g' => 'esa', 'Thhalv10009006m.g' => 'esa', 'Thhalv10009309m.g' => 'esa', 'Thhalv10014917m.g' => 'esa', 'Thhalv10014919m.g' => 'esa', 'Thhalv10015393m.g' => 'esa', 'Thhalv10016515m.g' => 'esa', 'Thhalv10029242m.g' => 'esa', 'TPR.G16654' => 'tpr', 'TPR.G20589' => 'tpr', 'TPR.G23029' => 'tpr', 'TPR.G27731' => 'tpr', 'TPR.G28889' => 'tpr', 'TPR.G28899' => 'tpr', 'TPR.G30846' => 'tpr', 'TPR.G5452' => 'tpr', 'TPR.G5713' => 'tpr', 'TPR.G9046' => 'tpr', 'TPR.G9061' => 'tpr', 'TWI09G1075' => 'twi', 'TWI12G0806' => 'twi', 'TWI18G0108' => 'twi', 'TWI53G1361' => 'twi', 'TWI73G0185' => 'twi', 'TWI73G0427' => 'twi', 'unitig_37.g12001' => 'ugi', 'unitig_747.g21660' => 'ugi', 'unitig_748.g7232' => 'ugi', 'unitig_748.g7315' => 'ugi', 'unitig_85.g27262' => 'ugi', 'unitig_92.g28220' => 'ugi', 'vmacro02632' => 'vma', 'vmacro08410' => 'vma', 'vmacro08411' => 'vma', 'vmacro15407' => 'vma', 'VMungo0251G3619' => 'vmu', 'VMungo0720G1204' => 'vmu', 'VMungo0720G1918' => 'vmu', 'VMungo0720G2387' => 'vmu', 'VMungo0720G2961' => 'vmu', 'VMungo1215G2154' => 'vmu', 'VMungo1383G2411' => 'vmu', 'Zm00001eb051130' => 'zma', 'Zm00001eb116830' => 'zma', 'Zm00001eb116850' => 'zma', 'Zm00001eb151740' => 'zma', 'Zm00001eb292360' => 'zma', 'Zm00001eb301640' => 'zma' ), 'gf_id' => 'HOM05D000856', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000856' ), 'data_identifier' => 'HOM05D000856', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000856', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p00010' => 'bna', 'A03p04160' => 'bna', 'A03p17160' => 'bna', 'A04p23370' => 'bna', 'A05p14860' => 'bna', 'A08p37020' => 'bna', 'A09p08050' => 'bna', 'A09p66800' => 'bna', 'A09p67940' => 'bna', 'A10p02680' => 'bna', 'A10p05320' => 'bna', 'Aa31LG1G20560' => 'aar', 'Aa31LG1G20610' => 'aar', 'Aa31LG1G7810' => 'aar', 'Aa31LG5G3590' => 'aar', 'Aa31LG5G6140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3819' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4683' => 'aag', 'Actinidia04480' => 'ach', 'Actinidia05466' => 'ach', 'Actinidia08445' => 'ach', 'Actinidia21170' => 'ach', 'Actinidia24812' => 'ach', 'Actinidia24951' => 'ach', 'Actinidia40088' => 'ach', 'Ah.02g111660' => 'amhyb', 'Ah.11g048900' => 'amhyb', 'Ah.11g049910' => 'amhyb', 'AL1G13870' => 'aly', 'AL1G13880' => 'aly', 'AL1G16760' => 'aly', 'AL390U10020' => 'aly', 'AL4G25520' => 'aly', 'AL6G19890' => 'aly', 'AL6G19900' => 'aly', 'AL6G19910' => 'aly', 'AL8G40100' => 'aly', 'Aqoxy2G03562' => 'aox', 'Aqoxy5G00316' => 'aox', 'Aqoxy5G00926' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1628KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1H403S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2FU6SJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.882I6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8YRY2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YN1SN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AF70II' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZA8L1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F916KL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHRD8H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KTZ8QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S22EMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8M29T' => 'arhy', 'AT1G04270' => 'ath', 'AT1G04280' => 'ath', 'AT1G06750' => 'ath', 'AT1G33850' => 'ath', 'AT2G30630' => 'ath', 'AT5G09490' => 'ath', 'AT5G09500' => 'ath', 'AT5G09510' => 'ath', 'AT5G43640' => 'ath', 'AT5G63070' => 'ath', 'ATR0605G315' => 'atr', 'Atru.chr11.175' => 'acertr', 'Atru.chr11.653' => 'acertr', 'Atru.chr3.1616' => 'acertr', 'Atru.chr4.2230' => 'acertr', 'Atru.chr4.2232' => 'acertr', 'Atru.chr5.1598' => 'acertr', 'Atru.chr5.1600' => 'acertr', 'Atru.chr5.2188' => 'acertr', 'AUR62008326' => 'cqu', 'AUR62011922' => 'cqu', 'AUR62011924' => 'cqu', 'AUR62021771' => 'cqu', 'AUR62032237' => 'cqu', 'AUR62032240' => 'cqu', 'BcaB01g05572' => 'bca', 'BcaB02g10337' => 'bca', 'BcaB04g19944' => 'bca', 'BcaB05g21548' => 'bca', 'BcaB05g21549' => 'bca', 'BcaB05g23227' => 'bca', 'BcaB06g26256' => 'bca', 'BcaB06g26257' => 'bca', 'BcaB06g28379' => 'bca', 'BcaC02g11159' => 'bca', 'BcaC03g13258' => 'bca', 'BcaC03g13259' => 'bca', 'BcaC05g24456' => 'bca', 'BcaC05g24457' => 'bca', 'BcaC07g36922' => 'bca', 'BcaC07g36923' => 'bca', 'BcaC07g42050' => 'bca', 'BcaC07g42176' => 'bca', 'BcaC07g42195' => 'bca', 'BcaC07g42196' => 'bca', 'BcaNung06674' => 'bca', 'BolC2t06351H' => 'bol', 'BolC2t06352H' => 'bol', 'BolC3t12993H' => 'bol', 'BolC4t23525H' => 'bol', 'BolC4t27475H' => 'bol', 'BolC5t29025H' => 'bol', 'BolC5t29026H' => 'bol', 'BolC8t46898H' => 'bol', 'BolC8t46899H' => 'bol', 'BolC8t52630H' => 'bol', 'BolC8t52765H' => 'bol', 'BolC9t53824H' => 'bol', 'BraA03t09760Z' => 'bra', 'BraA03t10990Z' => 'bra', 'BraA05t20413Z' => 'bra', 'BraA08t35602Z' => 'bra', 'BraA09t36458Z' => 'bra', 'BraA09t42018Z' => 'bra', 'BraA09t42129Z' => 'bra', 'BraA10t42536Z' => 'bra', 'BraA10t42537Z' => 'bra', 'C01p10690' => 'bna', 'C02p03890' => 'bna', 'C02p03900' => 'bna', 'C03p04620' => 'bna', 'C04p19870' => 'bna', 'C04p59670' => 'bna', 'C05p02460' => 'bna', 'C05p02470' => 'bna', 'C08p00980' => 'bna', 'C08p00990' => 'bna', 'C08p51030' => 'bna', 'C08p52360' => 'bna', 'C09p09120' => 'bna', 'CAN.G19.15' => 'can', 'CAN.G251.10' => 'can', 'CAN.G251.9' => 'can', 'CAN.G398.24' => 'can', 'CAN.G410.32' => 'can', 'CAN.G881.2' => 'can', 'CANSAT01G3025' => 'cansat', 'CANSAT78G1211' => 'cansat', 'CANSAT78G1218' => 'cansat', 'CANSAT78G1521' => 'cansat', 'CANSAT78G1670' => 'cansat', 'CARHR003600' => 'chi', 'CARHR003610' => 'chi', 'CARHR006290' => 'chi', 'CARHR006430' => 'chi', 'CARHR124110' => 'chi', 'CARHR203870' => 'chi', 'CARHR203880' => 'chi', 'CARHR203890' => 'chi', 'CARHR276880' => 'chi', 'Carub.0001s0346' => 'cru', 'Carub.0001s0347' => 'cru', 'Carub.0001s0607' => 'cru', 'Carub.0003s2768' => 'cru', 'Carub.0003s2769' => 'cru', 'Carub.0004s1178' => 'cru', 'Carub.0006s0806' => 'cru', 'Carub.0006s0807' => 'cru', 'Carub.0006s0808' => 'cru', 'Carub.0008s0501' => 'cru', 'Carub.0008s2379' => 'cru', 'Ca_08655_v3' => 'car', 'Ca_08922_v3' => 'car', 'Ca_08923_v3' => 'car', 'Ca_09119_v3' => 'car', 'Ca_09703_v3' => 'car', 'Ca_09705_v3' => 'car', 'Ca_09835_v3' => 'car', 'Ca_26403_v3' => 'car', 'Ca_30719_v3' => 'car', 'CBR_g17958' => 'cbr', 'CBR_g40516' => 'cbr', 'Cc00_g05350' => 'ccan', 'Cc01_g18690' => 'ccan', 'Cc03_g04830' => 'ccan', 'Cc03_g04850' => 'ccan', 'CDE02G4469' => 'cde', 'CDE06G0883' => 'cde', 'CDE06G1295' => 'cde', 'CDE06G1390' => 'cde', 'CDE07G0584' => 'cde', 'CDE07G1084' => 'cde', 'CDE08G1259' => 'cde', 'Cfa002341' => 'cfa', 'Cfa024337' => 'cfa', 'Ciclev10004749m.g' => 'ccl', 'Ciclev10006127m.g' => 'ccl', 'Ciclev10019720m.g' => 'ccl', 'Ciclev10022652m.g' => 'ccl', 'CiPaw.01G190400' => 'cil', 'CiPaw.01G190500' => 'cil', 'CiPaw.02G116400' => 'cil', 'CiPaw.02G116500' => 'cil', 'CiPaw.04G183000' => 'cil', 'CiPaw.04G183300' => 'cil', 'ClCG05G004610' => 'cla', 'ClCG05G004620' => 'cla', 'ClCG06G006730' => 'cla', 'ClCG06G006740' => 'cla', 'ClCG11G003690' => 'cla', 'COL.COLO4_08276' => 'col', 'COL.COLO4_08277' => 'col', 'COL.COLO4_15787' => 'col', 'COL.COLO4_15789' => 'col', 'Cpa.g.c44815' => 'cpa', 'Cpa.g.sc52.144' => 'cpa', 'Cpa.g.sc58.46' => 'cpa', 'Cpa.g.sc58.47' => 'cpa', 'Cre08.g360900' => 'cre', 'CsaV3_2G013030' => 'csa', 'CsaV3_2G013050' => 'csa', 'CsaV3_2G015620' => 'csa', 'CsaV3_3G012590' => 'csa', 'CsaV3_3G012600' => 'csa', 'CSS0001641' => 'camsi', 'CSS0008310' => 'camsi', 'CSS0013011' => 'camsi', 'CSS0017147' => 'camsi', 'CSS0022970' => 'camsi', 'CSS0025655' => 'camsi', 'CSS0028665' => 'camsi', 'CSS0029117' => 'camsi', 'CSS0032024' => 'camsi', 'CSS0039681' => 'camsi', 'CSS0046516' => 'camsi', 'CSS0050307' => 'camsi', 'DCAR_005871' => 'dca', 'DCAR_007342' => 'dca', 'DCAR_024228' => 'dca', 'DCAR_027277' => 'dca', 'DCAR_030718' => 'dca', 'Dinv20287' => 'din', 'Dinv22461' => 'din', 'Dinv22464' => 'din', 'Dinv29912' => 'din', 'Dinv29913' => 'din', 'Dinv34580' => 'din', 'Dinv34582' => 'din', 'Dinv44632' => 'din', 'Duzib052G0266' => 'dzi', 'Duzib133G0907' => 'dzi', 'Duzib133G1034' => 'dzi', 'Duzib138G0207' => 'dzi', 'Duzib138G0491' => 'dzi', 'Duzib151G0812' => 'dzi', 'Duzib151G1166' => 'dzi', 'Duzib168G0192' => 'dzi', 'Duzib211G0077' => 'dzi', 'Duzib212G0429' => 'dzi', 'Duzib212G0472' => 'dzi', 'ECA233G2617' => 'eca', 'ECA236G4188' => 'eca', 'ECA240G0936' => 'eca', 'ECA240G1129' => 'eca', 'ECA247G0623' => 'eca', 'EL10Ac5g10451' => 'bvu', 'EL10Ac5g10453' => 'bvu', 'EL10Ac5g10894' => 'bvu', 'Eucgr.H00192' => 'egr', 'Eucgr.H00193' => 'egr', 'Eucgr.H00194' => 'egr', 'Eucgr.J01562' => 'egr', 'Eucgr.K03301' => 'egr', 'FAN02G0632' => 'fan', 'FAN05G5378' => 'fan', 'FAN09G3247' => 'fan', 'FAN12G0435' => 'fan', 'FAN12G2426' => 'fan', 'FAN14G1707' => 'fan', 'FAN14G4725' => 'fan', 'FAN15G2071' => 'fan', 'FAN17G3065' => 'fan', 'FAN19G1376' => 'fan', 'FAN20G0354' => 'fan', 'FAN20G2429' => 'fan', 'FAN20G2658' => 'fan', 'FAN24G2343' => 'fan', 'FAN27G2362' => 'fan', 'FAN28G1765' => 'fan', 'FvH4_1g16020' => 'fve', 'FvH4_2g04890' => 'fve', 'FvH4_2g22270' => 'fve', 'FvH4_4g02630' => 'fve', 'FvH4_4g02640' => 'fve', 'FvH4_6g02650' => 'fve', 'Glyma.02G140600' => 'gma', 'Glyma.03G159900' => 'gma', 'Glyma.05G234800' => 'gma', 'Glyma.07G269600' => 'gma', 'Glyma.08G042300' => 'gma', 'Glyma.10G033500' => 'gma', 'Glyma.10G185200' => 'gma', 'Glyma.17G004300' => 'gma', 'Glyma.19G161900' => 'gma', 'Glyma.20G205100' => 'gma', 'Glyma.20G205200' => 'gma', 'Gohir.A01G139101' => 'ghi', 'Gohir.A02G035600' => 'ghi', 'Gohir.A02G117901' => 'ghi', 'Gohir.A07G210100' => 'ghi', 'Gohir.A07G210200' => 'ghi', 'Gohir.A08G061100' => 'ghi', 'Gohir.A09G223000' => 'ghi', 'Gohir.A09G223100' => 'ghi', 'Gohir.A10G113900' => 'ghi', 'Gohir.A10G114000' => 'ghi', 'Gohir.D02G042300' => 'ghi', 'Gohir.D07G216100' => 'ghi', 'Gohir.D07G216200' => 'ghi', 'Gohir.D08G070400' => 'ghi', 'Gohir.D09G225000' => 'ghi', 'Gohir.D09G225100' => 'ghi', 'Gohir.D10G152300' => 'ghi', 'Gohir.D10G153200' => 'ghi', 'Gohir.D11G133701' => 'ghi', 'Gorai.004G074100' => 'gra', 'Gorai.005G046800' => 'gra', 'Gorai.006G246500' => 'gra', 'Gorai.006G246600' => 'gra', 'Gorai.007G142900' => 'gra', 'Gorai.011G171000' => 'gra', 'Gorai.011G171100' => 'gra', 'Gorai.013G104300' => 'gra', 'Gorai.013G104400' => 'gra', 'GSVIVG01000754001' => 'vvi', 'GSVIVG01000756001' => 'vvi', 'GSVIVG01010903001' => 'vvi', 'GSVIVG01017623001' => 'vvi', 'GSVIVG01018113001' => 'vvi', 'GSVIVG01018116001' => 'vvi', 'GSVIVG01018118001' => 'vvi', 'HanXRQChr03g0076211' => 'han', 'HanXRQChr03g0092431' => 'han', 'HanXRQChr03g0092441' => 'han', 'HanXRQChr03g0092591' => 'han', 'HanXRQChr03g0092671' => 'han', 'HanXRQChr03g0092681' => 'han', 'HanXRQChr03g0092691' => 'han', 'HanXRQChr03g0092701' => 'han', 'HanXRQChr03g0092721' => 'han', 'HanXRQChr03g0092731' => 'han', 'HanXRQChr04g0113681' => 'han', 'HanXRQChr10g0281371' => 'han', 'HanXRQChr11g0337141' => 'han', 'HanXRQChr13g0424521' => 'han', 'HanXRQChr13g0424531' => 'han', 'HanXRQChr13g0424541' => 'han', 'HanXRQChr16g0498221' => 'han', 'Haze_04377' => 'cav', 'Haze_11298' => 'cav', 'Haze_24547' => 'cav', 'Haze_24550' => 'cav', 'Haze_26587' => 'cav', 'Hma1.2p1_0650F.1_g195410' => 'hma', 'Hma1.2p1_0893F.1_g233470' => 'hma', 'HPP92_006508' => 'vpl', 'HPP92_024780' => 'vpl', 'Hund02688' => 'sun', 'Hund09380' => 'sun', 'Hund09381' => 'sun', 'Hund09832' => 'sun', 'Hund09833' => 'sun', 'Hund11351' => 'sun', 'Hund11513' => 'sun', 'Lalb_Chr06g0162591' => 'lal', 'Lalb_Chr06g0162601' => 'lal', 'Lalb_Chr06g0169321' => 'lal', 'Lalb_Chr09g0330951' => 'lal', 'Lalb_Chr16g0387631' => 'lal', 'Lalb_Chr21g0306241' => 'lal', 'Lalb_Chr25g0290051' => 'lal', 'Lalb_Chr25g0290061' => 'lal', 'Lalb_Chr25g0290071' => 'lal', 'Lj1g0003876' => 'lja', 'Lj1P1207T36' => 'lonja', 'Lj2C1156G12' => 'lonja', 'Lj3A793G39' => 'lonja', 'Lj3C580G2' => 'lonja', 'Lj3C780G2' => 'lonja', 'Lj3C780T4' => 'lonja', 'Lj3C793G9' => 'lonja', 'Lj4g0012960' => 'lja', 'Lj5g0021252' => 'lja', 'Lj5g0021484' => 'lja', 'Lj5g0024528' => 'lja', 'Lj6A399T12' => 'lonja', 'Lj6A656G65' => 'lonja', 'Lsat_1_v5_gn_3_125500' => 'lsa', 'Lsat_1_v5_gn_3_125540' => 'lsa', 'Lsat_1_v5_gn_5_72701' => 'lsa', 'Lsat_1_v5_gn_8_91560' => 'lsa', 'Lsat_1_v5_gn_9_9640' => 'lsa', 'Manes.01G200600' => 'mes', 'Manes.01G200700' => 'mes', 'Manes.03G168900' => 'mes', 'Manes.03G169000' => 'mes', 'Manes.05G085801' => 'mes', 'Manes.05G086200' => 'mes', 'Manes.15G036700' => 'mes', 'Manes.15G036900' => 'mes', 'Mapoly0004s0172' => 'mpo', 'Mapoly0023s0001' => 'mpo', 'Mapoly0142s0012' => 'mpo', 'MBI01_g32854_MAGBIO' => 'mbi', 'MBI11_g24427_MAGBIO' => 'mbi', 'MBI11_g47319_MAGBIO' => 'mbi', 'MCO01G433' => 'mco', 'MD00G1187800' => 'mdo', 'MD04G1226500' => 'mdo', 'MD05G1203900' => 'mdo', 'MD10G1191100' => 'mdo', 'MD12G1243500' => 'mdo', 'MD13G1207000' => 'mdo', 'MD13G1207100' => 'mdo', 'MD16G1208600' => 'mdo', 'Medtr1g050352' => 'mtr', 'Medtr1g070385' => 'mtr', 'Medtr1g070450' => 'mtr', 'Medtr1g075200' => 'mtr', 'Medtr1g075250' => 'mtr', 'Medtr1g075260' => 'mtr', 'Medtr1g475250' => 'mtr', 'Medtr4g075450' => 'mtr', 'Medtr7g096300' => 'mtr', 'Medtr8g105110' => 'mtr', 'MELO3C006470.2' => 'cme', 'MELO3C006471.2' => 'cme', 'MELO3C020772.2' => 'cme', 'MELO3C026780.2' => 'cme', 'MELO3C026781.2' => 'cme', 'Migut.D00390' => 'egut', 'Migut.G00435' => 'egut', 'Migut.G00436' => 'egut', 'Migut.G00718' => 'egut', 'MSTRG.21891' => 'ama', 'MSTRG.26910' => 'ama', 'MSTRG.4099' => 'ama', 'MSTRG.9925' => 'ama', 'Nitab4.5_0000165g0010' => 'nta', 'Nitab4.5_0000209g0180' => 'nta', 'Nitab4.5_0000244g0440' => 'nta', 'Nitab4.5_0000525g0220' => 'nta', 'Nitab4.5_0001597g0020' => 'nta', 'Nitab4.5_0001878g0040' => 'nta', 'Nitab4.5_0001878g0060' => 'nta', 'Nitab4.5_0002838g0100' => 'nta', 'Nitab4.5_0002838g0120' => 'nta', 'Nitab4.5_0004798g0030' => 'nta', 'Nitab4.5_0005420g0010' => 'nta', 'Nitab4.5_0005507g0010' => 'nta', 'Nitab4.5_0005574g0020' => 'nta', 'Nitab4.5_0005838g0010' => 'nta', 'Nitab4.5_0010580g0020' => 'nta', 'Nn1g02599' => 'nnu', 'Nn1g02608' => 'nnu', 'Nn3g17742' => 'nnu', 'Nn3g19534' => 'nnu', 'Nn3g19535' => 'nnu', 'Oeu008790.1' => 'oeu', 'Oeu008792.1' => 'oeu', 'Oeu032590.1' => 'oeu', 'Oeu035349.1' => 'oeu', 'Oeu049791.1' => 'oeu', 'Os01g0774500' => 'osa', 'Os03g0628800' => 'osa', 'Os03g0798600' => 'osa', 'Os05g0508800' => 'osa', 'Peaxi162Scf00036g02018' => 'pax', 'Peaxi162Scf00578g00032' => 'pax', 'Peaxi162Scf00578g00317' => 'pax', 'Peaxi162Scf00785g00114' => 'pax', 'Peaxi162Scf00813g00119' => 'pax', 'Peaxi162Scf00906g00227' => 'pax', 'PGR004G0875' => 'pgr', 'PGR004G2424' => 'pgr', 'PGR031G1239' => 'pgr', 'PGR031G2474' => 'pgr', 'PGR044G0423' => 'pgr', 'PGSC0003DMG400001128' => 'stu', 'PGSC0003DMG400007336' => 'stu', 'PGSC0003DMG400016318' => 'stu', 'PGSC0003DMG400016319' => 'stu', 'PGSC0003DMG400018074' => 'stu', 'Phvul.001G157700' => 'pvu', 'Phvul.002G148550' => 'pvu', 'Phvul.002G320200' => 'pvu', 'Phvul.003G089200' => 'pvu', 'Phvul.007G126000' => 'pvu', 'Phvul.007G126100' => 'pvu', 'Phvul.007G178000' => 'pvu', 'Phvul.007G178200' => 'pvu', 'Potri.002G043000' => 'ptr', 'Potri.002G043200' => 'ptr', 'Potri.003G123750' => 'ptr', 'Potri.005G055401' => 'ptr', 'Potri.005G219700' => 'ptr', 'Potri.005G220000' => 'ptr', 'Potri.008G161901' => 'ptr', 'Potri.008G162000' => 'ptr', 'Potri.008G162400' => 'ptr', 'Potri.010G076900' => 'ptr', 'Pp3c12_9180' => 'ppa', 'Pp3c13_19770' => 'ppa', 'Pp3c14_22950' => 'ppa', 'Pp3c16_12160' => 'ppa', 'Pp3c27_7820' => 'ppa', 'Pp3c2_3490' => 'ppa', 'Pp3c3_23700' => 'ppa', 'Pp3c3_36520' => 'ppa', 'Pp3c4_15250' => 'ppa', 'PRCOL_00007002' => 'pco', 'Prupe.1G030600' => 'ppe', 'Prupe.1G030700' => 'ppe', 'Prupe.6G345200' => 'ppe', 'Prupe.8G230300' => 'ppe', 'Prupe.8G230500' => 'ppe', 'Psat3g059600' => 'psa', 'Psat5g200920' => 'psa', 'Psat6g056440' => 'psa', 'Psat6g057360' => 'psa', 'Psat6g134120' => 'psa', 'Psat6g134160' => 'psa', 'Psat7g008640' => 'psa', 'Psat7g185240' => 'psa', 'PSO017G1330' => 'pso', 'PSO063G6097' => 'pso', 'PSO170G0835' => 'pso', 'PSO170G2499' => 'pso', 'PSO210G5058' => 'pso', 'PSO210G6154' => 'pso', 'PSO585G0031' => 'pso', 'PSO832G0264' => 'pso', 'PSO832G4288' => 'pso', 'QL03p027355' => 'qlo', 'QL03p027430' => 'qlo', 'QL04p081380' => 'qlo', 'QL06p015642' => 'qlo', 'QL06p015650' => 'qlo', 'QL06p015686' => 'qlo', 'QL12p042927' => 'qlo', 'QL93p1863_0035' => 'qlo', 'RcHm_v2.0_Chr3g0450581' => 'rch', 'RcHm_v2.0_Chr4g0390371' => 'rch', 'RcHm_v2.0_Chr4g0390381' => 'rch', 'RcHm_v2.0_Chr4g0390491' => 'rch', 'RcHm_v2.0_Chr4g0390501' => 'rch', 'RcHm_v2.0_Chr6g0289231' => 'rch', 'Rhsim04G0190400' => 'rsi', 'Rhsim04G0190500' => 'rsi', 'Rhsim04G0190600' => 'rsi', 'Rhsim13G0031400' => 'rsi', 'Rhsim13G0165600' => 'rsi', 'RhsimUnG0114600' => 'rsi', 'RhsimUnG0114700' => 'rsi', 'Sabra02G0034800' => 'sbr', 'Sabra02G0035100' => 'sbr', 'Sabra05G0168600' => 'sbr', 'Sabra05G0168800' => 'sbr', 'Sabra08G0123700' => 'sbr', 'Sabra10G0031900' => 'sbr', 'Sabra13G0039000' => 'sbr', 'SalBow2G0782' => 'sbo', 'SalBow2G1403' => 'sbo', 'SalBow4G0074' => 'sbo', 'SalBow4G2635' => 'sbo', 'SalBow5G3010' => 'sbo', 'Sc05g0000870' => 'sci', 'Sc05g0000890' => 'sci', 'Sc13g0005000' => 'sci', 'Sc13g0005030' => 'sci', 'Sc19g0003790' => 'sci', 'Sc19g0003800' => 'sci', 'Sed0003467' => 'sed', 'Sed0009355' => 'sed', 'Sed0009894' => 'sed', 'Sed0011972' => 'sed', 'Sed0021483' => 'sed', 'Sed0021750' => 'sed', 'Sed0026279' => 'sed', 'SEGI_05312' => 'sgi', 'SEGI_10112' => 'sgi', 'SEGI_15835' => 'sgi', 'SEGI_30386' => 'sgi', 'SEGI_34122' => 'sgi', 'SEGI_35063' => 'sgi', 'SGA_v2.0_scaffold101G29794' => 'sas', 'SGA_v2.0_scaffold1G00573' => 'sas', 'SGA_v2.0_scaffold79G25637' => 'sas', 'SGA_v2.0_scaffold88G27283' => 'sas', 'SGA_v2.0_scaffold88G27285' => 'sas', 'SGA_v2.0_scaffold88G27331' => 'sas', 'SHI09937' => 'shi', 'SMO119G0302' => 'smo', 'SMO137G0231' => 'smo', 'SMO367G1151' => 'smo', 'Solyc02g082000.3' => 'sly', 'Solyc06g031670.3' => 'sly', 'Solyc06g053810.3' => 'sly', 'Solyc07g025457.1' => 'sly', 'Solyc08g059740.1' => 'sly', 'Solyc08g059750.3' => 'sly', 'Solyc09g083370.3' => 'sly', 'Solyc12g038950.3' => 'sly', 'Sopen02g026630' => 'spe', 'Sopen06g018930' => 'spe', 'Sopen06g018940' => 'spe', 'Sopen08g009460' => 'spe', 'Sopen09g032290' => 'spe', 'Sp1g03080' => 'spa', 'Sp1g03090' => 'spa', 'Sp1g05480' => 'spa', 'Sp2g07860' => 'spa', 'Sp2g08430' => 'spa', 'Sp2g08440' => 'spa', 'Sp2g26200' => 'spa', 'Sp4g13170' => 'spa', 'Sp6g33840' => 'spa', 'SpUn1204_0010' => 'spa', 'TAR365G0908' => 'tar', 'TAR381G1270' => 'tar', 'TAR381G1651' => 'tar', 'TAR625G1131' => 'tar', 'TAR633G0962' => 'tar', 'TAR633G1729' => 'tar', 'TAR633G1864' => 'tar', 'TAR636G0221' => 'tar', 'TAR636G0314' => 'tar', 'TAR636G3202' => 'tar', 'THA.LOC104800805' => 'tha', 'THA.LOC104801096' => 'tha', 'THA.LOC104801555' => 'tha', 'THA.LOC104808491' => 'tha', 'THA.LOC104808595' => 'tha', 'THA.LOC104815985' => 'tha', 'THA.LOC104822250' => 'tha', 'THA.LOC104826071' => 'tha', 'Thecc.01G265200' => 'tca', 'Thecc.01G265300' => 'tca', 'Thecc.01G265700' => 'tca', 'Thecc.03G109100' => 'tca', 'Thecc.04G245900' => 'tca', 'Thecc.04G246000' => 'tca', 'Thhalv10003334m.g' => 'esa', 'Thhalv10005508m.g' => 'esa', 'Thhalv10005643m.g' => 'esa', 'Thhalv10007316m.g' => 'esa', 'Thhalv10009006m.g' => 'esa', 'Thhalv10009309m.g' => 'esa', 'Thhalv10014917m.g' => 'esa', 'Thhalv10014919m.g' => 'esa', 'Thhalv10015393m.g' => 'esa', 'Thhalv10016515m.g' => 'esa', 'Thhalv10029242m.g' => 'esa', 'TPR.G16654' => 'tpr', 'TPR.G20589' => 'tpr', 'TPR.G23029' => 'tpr', 'TPR.G27731' => 'tpr', 'TPR.G28889' => 'tpr', 'TPR.G28899' => 'tpr', 'TPR.G30846' => 'tpr', 'TPR.G5452' => 'tpr', 'TPR.G5713' => 'tpr', 'TPR.G9046' => 'tpr', 'TPR.G9061' => 'tpr', 'TWI09G1075' => 'twi', 'TWI12G0806' => 'twi', 'TWI18G0108' => 'twi', 'TWI53G1361' => 'twi', 'TWI73G0185' => 'twi', 'TWI73G0427' => 'twi', 'unitig_37.g12001' => 'ugi', 'unitig_747.g21660' => 'ugi', 'unitig_748.g7232' => 'ugi', 'unitig_748.g7315' => 'ugi', 'unitig_85.g27262' => 'ugi', 'unitig_92.g28220' => 'ugi', 'vmacro02632' => 'vma', 'vmacro08410' => 'vma', 'vmacro08411' => 'vma', 'vmacro15407' => 'vma', 'VMungo0251G3619' => 'vmu', 'VMungo0720G1204' => 'vmu', 'VMungo0720G1918' => 'vmu', 'VMungo0720G2387' => 'vmu', 'VMungo0720G2961' => 'vmu', 'VMungo1215G2154' => 'vmu', 'VMungo1383G2411' => 'vmu', 'Zm00001eb051130' => 'zma', 'Zm00001eb116830' => 'zma', 'Zm00001eb116850' => 'zma', 'Zm00001eb151740' => 'zma', 'Zm00001eb292360' => 'zma', 'Zm00001eb301640' => 'zma' ) $gf_id = 'HOM05D000856' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000856' ) $data_identifier = 'HOM05D000856' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 13, 'ath' => (int) 10, 'atr' => (int) 1, 'acertr' => (int) 8, 'cqu' => (int) 6, 'bca' => (int) 21, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 11, 'car' => (int) 9, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 8, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 5, 'fan' => (int) 16, 'fve' => (int) 6, 'gma' => (int) 11, 'ghi' => (int) 19, 'gra' => (int) 9, 'vvi' => (int) 7, 'han' => (int) 17, 'cav' => (int) 5, 'hma' => (int) 2, 'vpl' => (int) 2, 'sun' => (int) 7, 'lal' => (int) 9, 'lja' => (int) 5, 'lonja' => (int) 9, 'lsa' => (int) 5, 'mes' => (int) 8, 'mpo' => (int) 3, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 10, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 15, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 9, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 9, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 6, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 5, 'spa' => (int) 10, 'tar' => (int) 10, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 11, 'tpr' => (int) 11, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 4, 'vmu' => (int) 7, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb301640' $species_info = array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ) $local_species = 'osa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000856', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p00010' => 'bna', 'A03p04160' => 'bna', 'A03p17160' => 'bna', 'A04p23370' => 'bna', 'A05p14860' => 'bna', 'A08p37020' => 'bna', 'A09p08050' => 'bna', 'A09p66800' => 'bna', 'A09p67940' => 'bna', 'A10p02680' => 'bna', 'A10p05320' => 'bna', 'Aa31LG1G20560' => 'aar', 'Aa31LG1G20610' => 'aar', 'Aa31LG1G7810' => 'aar', 'Aa31LG5G3590' => 'aar', 'Aa31LG5G6140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3819' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4683' => 'aag', 'Actinidia04480' => 'ach', 'Actinidia05466' => 'ach', 'Actinidia08445' => 'ach', 'Actinidia21170' => 'ach', 'Actinidia24812' => 'ach', 'Actinidia24951' => 'ach', 'Actinidia40088' => 'ach', 'Ah.02g111660' => 'amhyb', 'Ah.11g048900' => 'amhyb', 'Ah.11g049910' => 'amhyb', 'AL1G13870' => 'aly', 'AL1G13880' => 'aly', 'AL1G16760' => 'aly', 'AL390U10020' => 'aly', 'AL4G25520' => 'aly', 'AL6G19890' => 'aly', 'AL6G19900' => 'aly', 'AL6G19910' => 'aly', 'AL8G40100' => 'aly', 'Aqoxy2G03562' => 'aox', 'Aqoxy5G00316' => 'aox', 'Aqoxy5G00926' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1628KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1H403S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2FU6SJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.882I6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8YRY2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YN1SN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AF70II' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZA8L1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F916KL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHRD8H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KTZ8QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S22EMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8M29T' => 'arhy', 'AT1G04270' => 'ath', 'AT1G04280' => 'ath', 'AT1G06750' => 'ath', 'AT1G33850' => 'ath', 'AT2G30630' => 'ath', 'AT5G09490' => 'ath', 'AT5G09500' => 'ath', 'AT5G09510' => 'ath', 'AT5G43640' => 'ath', 'AT5G63070' => 'ath', 'ATR0605G315' => 'atr', 'Atru.chr11.175' => 'acertr', 'Atru.chr11.653' => 'acertr', 'Atru.chr3.1616' => 'acertr', 'Atru.chr4.2230' => 'acertr', 'Atru.chr4.2232' => 'acertr', 'Atru.chr5.1598' => 'acertr', 'Atru.chr5.1600' => 'acertr', 'Atru.chr5.2188' => 'acertr', 'AUR62008326' => 'cqu', 'AUR62011922' => 'cqu', 'AUR62011924' => 'cqu', 'AUR62021771' => 'cqu', 'AUR62032237' => 'cqu', 'AUR62032240' => 'cqu', 'BcaB01g05572' => 'bca', 'BcaB02g10337' => 'bca', 'BcaB04g19944' => 'bca', 'BcaB05g21548' => 'bca', 'BcaB05g21549' => 'bca', 'BcaB05g23227' => 'bca', 'BcaB06g26256' => 'bca', 'BcaB06g26257' => 'bca', 'BcaB06g28379' => 'bca', 'BcaC02g11159' => 'bca', 'BcaC03g13258' => 'bca', 'BcaC03g13259' => 'bca', 'BcaC05g24456' => 'bca', 'BcaC05g24457' => 'bca', 'BcaC07g36922' => 'bca', 'BcaC07g36923' => 'bca', 'BcaC07g42050' => 'bca', 'BcaC07g42176' => 'bca', 'BcaC07g42195' => 'bca', 'BcaC07g42196' => 'bca', 'BcaNung06674' => 'bca', 'BolC2t06351H' => 'bol', 'BolC2t06352H' => 'bol', 'BolC3t12993H' => 'bol', 'BolC4t23525H' => 'bol', 'BolC4t27475H' => 'bol', 'BolC5t29025H' => 'bol', 'BolC5t29026H' => 'bol', 'BolC8t46898H' => 'bol', 'BolC8t46899H' => 'bol', 'BolC8t52630H' => 'bol', 'BolC8t52765H' => 'bol', 'BolC9t53824H' => 'bol', 'BraA03t09760Z' => 'bra', 'BraA03t10990Z' => 'bra', 'BraA05t20413Z' => 'bra', 'BraA08t35602Z' => 'bra', 'BraA09t36458Z' => 'bra', 'BraA09t42018Z' => 'bra', 'BraA09t42129Z' => 'bra', 'BraA10t42536Z' => 'bra', 'BraA10t42537Z' => 'bra', 'C01p10690' => 'bna', 'C02p03890' => 'bna', 'C02p03900' => 'bna', 'C03p04620' => 'bna', 'C04p19870' => 'bna', 'C04p59670' => 'bna', 'C05p02460' => 'bna', 'C05p02470' => 'bna', 'C08p00980' => 'bna', 'C08p00990' => 'bna', 'C08p51030' => 'bna', 'C08p52360' => 'bna', 'C09p09120' => 'bna', 'CAN.G19.15' => 'can', 'CAN.G251.10' => 'can', 'CAN.G251.9' => 'can', 'CAN.G398.24' => 'can', 'CAN.G410.32' => 'can', 'CAN.G881.2' => 'can', 'CANSAT01G3025' => 'cansat', 'CANSAT78G1211' => 'cansat', 'CANSAT78G1218' => 'cansat', 'CANSAT78G1521' => 'cansat', 'CANSAT78G1670' => 'cansat', 'CARHR003600' => 'chi', 'CARHR003610' => 'chi', 'CARHR006290' => 'chi', 'CARHR006430' => 'chi', 'CARHR124110' => 'chi', 'CARHR203870' => 'chi', 'CARHR203880' => 'chi', 'CARHR203890' => 'chi', 'CARHR276880' => 'chi', 'Carub.0001s0346' => 'cru', 'Carub.0001s0347' => 'cru', 'Carub.0001s0607' => 'cru', 'Carub.0003s2768' => 'cru', 'Carub.0003s2769' => 'cru', 'Carub.0004s1178' => 'cru', 'Carub.0006s0806' => 'cru', 'Carub.0006s0807' => 'cru', 'Carub.0006s0808' => 'cru', 'Carub.0008s0501' => 'cru', 'Carub.0008s2379' => 'cru', 'Ca_08655_v3' => 'car', 'Ca_08922_v3' => 'car', 'Ca_08923_v3' => 'car', 'Ca_09119_v3' => 'car', 'Ca_09703_v3' => 'car', 'Ca_09705_v3' => 'car', 'Ca_09835_v3' => 'car', 'Ca_26403_v3' => 'car', 'Ca_30719_v3' => 'car', 'CBR_g17958' => 'cbr', 'CBR_g40516' => 'cbr', 'Cc00_g05350' => 'ccan', 'Cc01_g18690' => 'ccan', 'Cc03_g04830' => 'ccan', 'Cc03_g04850' => 'ccan', 'CDE02G4469' => 'cde', 'CDE06G0883' => 'cde', 'CDE06G1295' => 'cde', 'CDE06G1390' => 'cde', 'CDE07G0584' => 'cde', 'CDE07G1084' => 'cde', 'CDE08G1259' => 'cde', 'Cfa002341' => 'cfa', 'Cfa024337' => 'cfa', 'Ciclev10004749m.g' => 'ccl', 'Ciclev10006127m.g' => 'ccl', 'Ciclev10019720m.g' => 'ccl', 'Ciclev10022652m.g' => 'ccl', 'CiPaw.01G190400' => 'cil', 'CiPaw.01G190500' => 'cil', 'CiPaw.02G116400' => 'cil', 'CiPaw.02G116500' => 'cil', 'CiPaw.04G183000' => 'cil', 'CiPaw.04G183300' => 'cil', 'ClCG05G004610' => 'cla', 'ClCG05G004620' => 'cla', 'ClCG06G006730' => 'cla', 'ClCG06G006740' => 'cla', 'ClCG11G003690' => 'cla', 'COL.COLO4_08276' => 'col', 'COL.COLO4_08277' => 'col', 'COL.COLO4_15787' => 'col', 'COL.COLO4_15789' => 'col', 'Cpa.g.c44815' => 'cpa', 'Cpa.g.sc52.144' => 'cpa', 'Cpa.g.sc58.46' => 'cpa', 'Cpa.g.sc58.47' => 'cpa', 'Cre08.g360900' => 'cre', 'CsaV3_2G013030' => 'csa', 'CsaV3_2G013050' => 'csa', 'CsaV3_2G015620' => 'csa', 'CsaV3_3G012590' => 'csa', 'CsaV3_3G012600' => 'csa', 'CSS0001641' => 'camsi', 'CSS0008310' => 'camsi', 'CSS0013011' => 'camsi', 'CSS0017147' => 'camsi', 'CSS0022970' => 'camsi', 'CSS0025655' => 'camsi', 'CSS0028665' => 'camsi', 'CSS0029117' => 'camsi', 'CSS0032024' => 'camsi', 'CSS0039681' => 'camsi', 'CSS0046516' => 'camsi', 'CSS0050307' => 'camsi', 'DCAR_005871' => 'dca', 'DCAR_007342' => 'dca', 'DCAR_024228' => 'dca', 'DCAR_027277' => 'dca', 'DCAR_030718' => 'dca', 'Dinv20287' => 'din', 'Dinv22461' => 'din', 'Dinv22464' => 'din', 'Dinv29912' => 'din', 'Dinv29913' => 'din', 'Dinv34580' => 'din', 'Dinv34582' => 'din', 'Dinv44632' => 'din', 'Duzib052G0266' => 'dzi', 'Duzib133G0907' => 'dzi', 'Duzib133G1034' => 'dzi', 'Duzib138G0207' => 'dzi', 'Duzib138G0491' => 'dzi', 'Duzib151G0812' => 'dzi', 'Duzib151G1166' => 'dzi', 'Duzib168G0192' => 'dzi', 'Duzib211G0077' => 'dzi', 'Duzib212G0429' => 'dzi', 'Duzib212G0472' => 'dzi', 'ECA233G2617' => 'eca', 'ECA236G4188' => 'eca', 'ECA240G0936' => 'eca', 'ECA240G1129' => 'eca', 'ECA247G0623' => 'eca', 'EL10Ac5g10451' => 'bvu', 'EL10Ac5g10453' => 'bvu', 'EL10Ac5g10894' => 'bvu', 'Eucgr.H00192' => 'egr', 'Eucgr.H00193' => 'egr', 'Eucgr.H00194' => 'egr', 'Eucgr.J01562' => 'egr', 'Eucgr.K03301' => 'egr', 'FAN02G0632' => 'fan', 'FAN05G5378' => 'fan', 'FAN09G3247' => 'fan', 'FAN12G0435' => 'fan', 'FAN12G2426' => 'fan', 'FAN14G1707' => 'fan', 'FAN14G4725' => 'fan', 'FAN15G2071' => 'fan', 'FAN17G3065' => 'fan', 'FAN19G1376' => 'fan', 'FAN20G0354' => 'fan', 'FAN20G2429' => 'fan', 'FAN20G2658' => 'fan', 'FAN24G2343' => 'fan', 'FAN27G2362' => 'fan', 'FAN28G1765' => 'fan', 'FvH4_1g16020' => 'fve', 'FvH4_2g04890' => 'fve', 'FvH4_2g22270' => 'fve', 'FvH4_4g02630' => 'fve', 'FvH4_4g02640' => 'fve', 'FvH4_6g02650' => 'fve', 'Glyma.02G140600' => 'gma', 'Glyma.03G159900' => 'gma', 'Glyma.05G234800' => 'gma', 'Glyma.07G269600' => 'gma', 'Glyma.08G042300' => 'gma', 'Glyma.10G033500' => 'gma', 'Glyma.10G185200' => 'gma', 'Glyma.17G004300' => 'gma', 'Glyma.19G161900' => 'gma', 'Glyma.20G205100' => 'gma', 'Glyma.20G205200' => 'gma', 'Gohir.A01G139101' => 'ghi', 'Gohir.A02G035600' => 'ghi', 'Gohir.A02G117901' => 'ghi', 'Gohir.A07G210100' => 'ghi', 'Gohir.A07G210200' => 'ghi', 'Gohir.A08G061100' => 'ghi', 'Gohir.A09G223000' => 'ghi', 'Gohir.A09G223100' => 'ghi', 'Gohir.A10G113900' => 'ghi', 'Gohir.A10G114000' => 'ghi', 'Gohir.D02G042300' => 'ghi', 'Gohir.D07G216100' => 'ghi', 'Gohir.D07G216200' => 'ghi', 'Gohir.D08G070400' => 'ghi', 'Gohir.D09G225000' => 'ghi', 'Gohir.D09G225100' => 'ghi', 'Gohir.D10G152300' => 'ghi', 'Gohir.D10G153200' => 'ghi', 'Gohir.D11G133701' => 'ghi', 'Gorai.004G074100' => 'gra', 'Gorai.005G046800' => 'gra', 'Gorai.006G246500' => 'gra', 'Gorai.006G246600' => 'gra', 'Gorai.007G142900' => 'gra', 'Gorai.011G171000' => 'gra', 'Gorai.011G171100' => 'gra', 'Gorai.013G104300' => 'gra', 'Gorai.013G104400' => 'gra', 'GSVIVG01000754001' => 'vvi', 'GSVIVG01000756001' => 'vvi', 'GSVIVG01010903001' => 'vvi', 'GSVIVG01017623001' => 'vvi', 'GSVIVG01018113001' => 'vvi', 'GSVIVG01018116001' => 'vvi', 'GSVIVG01018118001' => 'vvi', 'HanXRQChr03g0076211' => 'han', 'HanXRQChr03g0092431' => 'han', 'HanXRQChr03g0092441' => 'han', 'HanXRQChr03g0092591' => 'han', 'HanXRQChr03g0092671' => 'han', 'HanXRQChr03g0092681' => 'han', 'HanXRQChr03g0092691' => 'han', 'HanXRQChr03g0092701' => 'han', 'HanXRQChr03g0092721' => 'han', 'HanXRQChr03g0092731' => 'han', 'HanXRQChr04g0113681' => 'han', 'HanXRQChr10g0281371' => 'han', 'HanXRQChr11g0337141' => 'han', 'HanXRQChr13g0424521' => 'han', 'HanXRQChr13g0424531' => 'han', 'HanXRQChr13g0424541' => 'han', 'HanXRQChr16g0498221' => 'han', 'Haze_04377' => 'cav', 'Haze_11298' => 'cav', 'Haze_24547' => 'cav', 'Haze_24550' => 'cav', 'Haze_26587' => 'cav', 'Hma1.2p1_0650F.1_g195410' => 'hma', 'Hma1.2p1_0893F.1_g233470' => 'hma', 'HPP92_006508' => 'vpl', 'HPP92_024780' => 'vpl', 'Hund02688' => 'sun', 'Hund09380' => 'sun', 'Hund09381' => 'sun', 'Hund09832' => 'sun', 'Hund09833' => 'sun', 'Hund11351' => 'sun', 'Hund11513' => 'sun', 'Lalb_Chr06g0162591' => 'lal', 'Lalb_Chr06g0162601' => 'lal', 'Lalb_Chr06g0169321' => 'lal', 'Lalb_Chr09g0330951' => 'lal', 'Lalb_Chr16g0387631' => 'lal', 'Lalb_Chr21g0306241' => 'lal', 'Lalb_Chr25g0290051' => 'lal', 'Lalb_Chr25g0290061' => 'lal', 'Lalb_Chr25g0290071' => 'lal', 'Lj1g0003876' => 'lja', 'Lj1P1207T36' => 'lonja', 'Lj2C1156G12' => 'lonja', 'Lj3A793G39' => 'lonja', 'Lj3C580G2' => 'lonja', 'Lj3C780G2' => 'lonja', 'Lj3C780T4' => 'lonja', 'Lj3C793G9' => 'lonja', 'Lj4g0012960' => 'lja', 'Lj5g0021252' => 'lja', 'Lj5g0021484' => 'lja', 'Lj5g0024528' => 'lja', 'Lj6A399T12' => 'lonja', 'Lj6A656G65' => 'lonja', 'Lsat_1_v5_gn_3_125500' => 'lsa', 'Lsat_1_v5_gn_3_125540' => 'lsa', 'Lsat_1_v5_gn_5_72701' => 'lsa', 'Lsat_1_v5_gn_8_91560' => 'lsa', 'Lsat_1_v5_gn_9_9640' => 'lsa', 'Manes.01G200600' => 'mes', 'Manes.01G200700' => 'mes', 'Manes.03G168900' => 'mes', 'Manes.03G169000' => 'mes', 'Manes.05G085801' => 'mes', 'Manes.05G086200' => 'mes', 'Manes.15G036700' => 'mes', 'Manes.15G036900' => 'mes', 'Mapoly0004s0172' => 'mpo', 'Mapoly0023s0001' => 'mpo', 'Mapoly0142s0012' => 'mpo', 'MBI01_g32854_MAGBIO' => 'mbi', 'MBI11_g24427_MAGBIO' => 'mbi', 'MBI11_g47319_MAGBIO' => 'mbi', 'MCO01G433' => 'mco', 'MD00G1187800' => 'mdo', 'MD04G1226500' => 'mdo', 'MD05G1203900' => 'mdo', 'MD10G1191100' => 'mdo', 'MD12G1243500' => 'mdo', 'MD13G1207000' => 'mdo', 'MD13G1207100' => 'mdo', 'MD16G1208600' => 'mdo', 'Medtr1g050352' => 'mtr', 'Medtr1g070385' => 'mtr', 'Medtr1g070450' => 'mtr', 'Medtr1g075200' => 'mtr', 'Medtr1g075250' => 'mtr', 'Medtr1g075260' => 'mtr', 'Medtr1g475250' => 'mtr', 'Medtr4g075450' => 'mtr', 'Medtr7g096300' => 'mtr', 'Medtr8g105110' => 'mtr', 'MELO3C006470.2' => 'cme', 'MELO3C006471.2' => 'cme', 'MELO3C020772.2' => 'cme', 'MELO3C026780.2' => 'cme', 'MELO3C026781.2' => 'cme', 'Migut.D00390' => 'egut', 'Migut.G00435' => 'egut', 'Migut.G00436' => 'egut', 'Migut.G00718' => 'egut', 'MSTRG.21891' => 'ama', 'MSTRG.26910' => 'ama', 'MSTRG.4099' => 'ama', 'MSTRG.9925' => 'ama', 'Nitab4.5_0000165g0010' => 'nta', 'Nitab4.5_0000209g0180' => 'nta', 'Nitab4.5_0000244g0440' => 'nta', 'Nitab4.5_0000525g0220' => 'nta', 'Nitab4.5_0001597g0020' => 'nta', 'Nitab4.5_0001878g0040' => 'nta', 'Nitab4.5_0001878g0060' => 'nta', 'Nitab4.5_0002838g0100' => 'nta', 'Nitab4.5_0002838g0120' => 'nta', 'Nitab4.5_0004798g0030' => 'nta', 'Nitab4.5_0005420g0010' => 'nta', 'Nitab4.5_0005507g0010' => 'nta', 'Nitab4.5_0005574g0020' => 'nta', 'Nitab4.5_0005838g0010' => 'nta', 'Nitab4.5_0010580g0020' => 'nta', 'Nn1g02599' => 'nnu', 'Nn1g02608' => 'nnu', 'Nn3g17742' => 'nnu', 'Nn3g19534' => 'nnu', 'Nn3g19535' => 'nnu', 'Oeu008790.1' => 'oeu', 'Oeu008792.1' => 'oeu', 'Oeu032590.1' => 'oeu', 'Oeu035349.1' => 'oeu', 'Oeu049791.1' => 'oeu', 'Os01g0774500' => 'osa', 'Os03g0628800' => 'osa', 'Os03g0798600' => 'osa', 'Os05g0508800' => 'osa', 'Peaxi162Scf00036g02018' => 'pax', 'Peaxi162Scf00578g00032' => 'pax', 'Peaxi162Scf00578g00317' => 'pax', 'Peaxi162Scf00785g00114' => 'pax', 'Peaxi162Scf00813g00119' => 'pax', 'Peaxi162Scf00906g00227' => 'pax', 'PGR004G0875' => 'pgr', 'PGR004G2424' => 'pgr', 'PGR031G1239' => 'pgr', 'PGR031G2474' => 'pgr', 'PGR044G0423' => 'pgr', 'PGSC0003DMG400001128' => 'stu', 'PGSC0003DMG400007336' => 'stu', 'PGSC0003DMG400016318' => 'stu', 'PGSC0003DMG400016319' => 'stu', 'PGSC0003DMG400018074' => 'stu', 'Phvul.001G157700' => 'pvu', 'Phvul.002G148550' => 'pvu', 'Phvul.002G320200' => 'pvu', 'Phvul.003G089200' => 'pvu', 'Phvul.007G126000' => 'pvu', 'Phvul.007G126100' => 'pvu', 'Phvul.007G178000' => 'pvu', 'Phvul.007G178200' => 'pvu', 'Potri.002G043000' => 'ptr', 'Potri.002G043200' => 'ptr', 'Potri.003G123750' => 'ptr', 'Potri.005G055401' => 'ptr', 'Potri.005G219700' => 'ptr', 'Potri.005G220000' => 'ptr', 'Potri.008G161901' => 'ptr', 'Potri.008G162000' => 'ptr', 'Potri.008G162400' => 'ptr', 'Potri.010G076900' => 'ptr', 'Pp3c12_9180' => 'ppa', 'Pp3c13_19770' => 'ppa', 'Pp3c14_22950' => 'ppa', 'Pp3c16_12160' => 'ppa', 'Pp3c27_7820' => 'ppa', 'Pp3c2_3490' => 'ppa', 'Pp3c3_23700' => 'ppa', 'Pp3c3_36520' => 'ppa', 'Pp3c4_15250' => 'ppa', 'PRCOL_00007002' => 'pco', 'Prupe.1G030600' => 'ppe', 'Prupe.1G030700' => 'ppe', 'Prupe.6G345200' => 'ppe', 'Prupe.8G230300' => 'ppe', 'Prupe.8G230500' => 'ppe', 'Psat3g059600' => 'psa', 'Psat5g200920' => 'psa', 'Psat6g056440' => 'psa', 'Psat6g057360' => 'psa', 'Psat6g134120' => 'psa', 'Psat6g134160' => 'psa', 'Psat7g008640' => 'psa', 'Psat7g185240' => 'psa', 'PSO017G1330' => 'pso', 'PSO063G6097' => 'pso', 'PSO170G0835' => 'pso', 'PSO170G2499' => 'pso', 'PSO210G5058' => 'pso', 'PSO210G6154' => 'pso', 'PSO585G0031' => 'pso', 'PSO832G0264' => 'pso', 'PSO832G4288' => 'pso', 'QL03p027355' => 'qlo', 'QL03p027430' => 'qlo', 'QL04p081380' => 'qlo', 'QL06p015642' => 'qlo', 'QL06p015650' => 'qlo', 'QL06p015686' => 'qlo', 'QL12p042927' => 'qlo', 'QL93p1863_0035' => 'qlo', 'RcHm_v2.0_Chr3g0450581' => 'rch', 'RcHm_v2.0_Chr4g0390371' => 'rch', 'RcHm_v2.0_Chr4g0390381' => 'rch', 'RcHm_v2.0_Chr4g0390491' => 'rch', 'RcHm_v2.0_Chr4g0390501' => 'rch', 'RcHm_v2.0_Chr6g0289231' => 'rch', 'Rhsim04G0190400' => 'rsi', 'Rhsim04G0190500' => 'rsi', 'Rhsim04G0190600' => 'rsi', 'Rhsim13G0031400' => 'rsi', 'Rhsim13G0165600' => 'rsi', 'RhsimUnG0114600' => 'rsi', 'RhsimUnG0114700' => 'rsi', 'Sabra02G0034800' => 'sbr', 'Sabra02G0035100' => 'sbr', 'Sabra05G0168600' => 'sbr', 'Sabra05G0168800' => 'sbr', 'Sabra08G0123700' => 'sbr', 'Sabra10G0031900' => 'sbr', 'Sabra13G0039000' => 'sbr', 'SalBow2G0782' => 'sbo', 'SalBow2G1403' => 'sbo', 'SalBow4G0074' => 'sbo', 'SalBow4G2635' => 'sbo', 'SalBow5G3010' => 'sbo', 'Sc05g0000870' => 'sci', 'Sc05g0000890' => 'sci', 'Sc13g0005000' => 'sci', 'Sc13g0005030' => 'sci', 'Sc19g0003790' => 'sci', 'Sc19g0003800' => 'sci', 'Sed0003467' => 'sed', 'Sed0009355' => 'sed', 'Sed0009894' => 'sed', 'Sed0011972' => 'sed', 'Sed0021483' => 'sed', 'Sed0021750' => 'sed', 'Sed0026279' => 'sed', 'SEGI_05312' => 'sgi', 'SEGI_10112' => 'sgi', 'SEGI_15835' => 'sgi', 'SEGI_30386' => 'sgi', 'SEGI_34122' => 'sgi', 'SEGI_35063' => 'sgi', 'SGA_v2.0_scaffold101G29794' => 'sas', 'SGA_v2.0_scaffold1G00573' => 'sas', 'SGA_v2.0_scaffold79G25637' => 'sas', 'SGA_v2.0_scaffold88G27283' => 'sas', 'SGA_v2.0_scaffold88G27285' => 'sas', 'SGA_v2.0_scaffold88G27331' => 'sas', 'SHI09937' => 'shi', 'SMO119G0302' => 'smo', 'SMO137G0231' => 'smo', 'SMO367G1151' => 'smo', 'Solyc02g082000.3' => 'sly', 'Solyc06g031670.3' => 'sly', 'Solyc06g053810.3' => 'sly', 'Solyc07g025457.1' => 'sly', 'Solyc08g059740.1' => 'sly', 'Solyc08g059750.3' => 'sly', 'Solyc09g083370.3' => 'sly', 'Solyc12g038950.3' => 'sly', 'Sopen02g026630' => 'spe', 'Sopen06g018930' => 'spe', 'Sopen06g018940' => 'spe', 'Sopen08g009460' => 'spe', 'Sopen09g032290' => 'spe', 'Sp1g03080' => 'spa', 'Sp1g03090' => 'spa', 'Sp1g05480' => 'spa', 'Sp2g07860' => 'spa', 'Sp2g08430' => 'spa', 'Sp2g08440' => 'spa', 'Sp2g26200' => 'spa', 'Sp4g13170' => 'spa', 'Sp6g33840' => 'spa', 'SpUn1204_0010' => 'spa', 'TAR365G0908' => 'tar', 'TAR381G1270' => 'tar', 'TAR381G1651' => 'tar', 'TAR625G1131' => 'tar', 'TAR633G0962' => 'tar', 'TAR633G1729' => 'tar', 'TAR633G1864' => 'tar', 'TAR636G0221' => 'tar', 'TAR636G0314' => 'tar', 'TAR636G3202' => 'tar', 'THA.LOC104800805' => 'tha', 'THA.LOC104801096' => 'tha', 'THA.LOC104801555' => 'tha', 'THA.LOC104808491' => 'tha', 'THA.LOC104808595' => 'tha', 'THA.LOC104815985' => 'tha', 'THA.LOC104822250' => 'tha', 'THA.LOC104826071' => 'tha', 'Thecc.01G265200' => 'tca', 'Thecc.01G265300' => 'tca', 'Thecc.01G265700' => 'tca', 'Thecc.03G109100' => 'tca', 'Thecc.04G245900' => 'tca', 'Thecc.04G246000' => 'tca', 'Thhalv10003334m.g' => 'esa', 'Thhalv10005508m.g' => 'esa', 'Thhalv10005643m.g' => 'esa', 'Thhalv10007316m.g' => 'esa', 'Thhalv10009006m.g' => 'esa', 'Thhalv10009309m.g' => 'esa', 'Thhalv10014917m.g' => 'esa', 'Thhalv10014919m.g' => 'esa', 'Thhalv10015393m.g' => 'esa', 'Thhalv10016515m.g' => 'esa', 'Thhalv10029242m.g' => 'esa', 'TPR.G16654' => 'tpr', 'TPR.G20589' => 'tpr', 'TPR.G23029' => 'tpr', 'TPR.G27731' => 'tpr', 'TPR.G28889' => 'tpr', 'TPR.G28899' => 'tpr', 'TPR.G30846' => 'tpr', 'TPR.G5452' => 'tpr', 'TPR.G5713' => 'tpr', 'TPR.G9046' => 'tpr', 'TPR.G9061' => 'tpr', 'TWI09G1075' => 'twi', 'TWI12G0806' => 'twi', 'TWI18G0108' => 'twi', 'TWI53G1361' => 'twi', 'TWI73G0185' => 'twi', 'TWI73G0427' => 'twi', 'unitig_37.g12001' => 'ugi', 'unitig_747.g21660' => 'ugi', 'unitig_748.g7232' => 'ugi', 'unitig_748.g7315' => 'ugi', 'unitig_85.g27262' => 'ugi', 'unitig_92.g28220' => 'ugi', 'vmacro02632' => 'vma', 'vmacro08410' => 'vma', 'vmacro08411' => 'vma', 'vmacro15407' => 'vma', 'VMungo0251G3619' => 'vmu', 'VMungo0720G1204' => 'vmu', 'VMungo0720G1918' => 'vmu', 'VMungo0720G2387' => 'vmu', 'VMungo0720G2961' => 'vmu', 'VMungo1215G2154' => 'vmu', 'VMungo1383G2411' => 'vmu', 'Zm00001eb051130' => 'zma', 'Zm00001eb116830' => 'zma', 'Zm00001eb116850' => 'zma', 'Zm00001eb151740' => 'zma', 'Zm00001eb292360' => 'zma', 'Zm00001eb301640' => 'zma' ), 'gf_id' => 'HOM05D000856', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000856' ), 'data_identifier' => 'HOM05D000856', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000856', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p00010' => 'bna', 'A03p04160' => 'bna', 'A03p17160' => 'bna', 'A04p23370' => 'bna', 'A05p14860' => 'bna', 'A08p37020' => 'bna', 'A09p08050' => 'bna', 'A09p66800' => 'bna', 'A09p67940' => 'bna', 'A10p02680' => 'bna', 'A10p05320' => 'bna', 'Aa31LG1G20560' => 'aar', 'Aa31LG1G20610' => 'aar', 'Aa31LG1G7810' => 'aar', 'Aa31LG5G3590' => 'aar', 'Aa31LG5G6140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3819' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4683' => 'aag', 'Actinidia04480' => 'ach', 'Actinidia05466' => 'ach', 'Actinidia08445' => 'ach', 'Actinidia21170' => 'ach', 'Actinidia24812' => 'ach', 'Actinidia24951' => 'ach', 'Actinidia40088' => 'ach', 'Ah.02g111660' => 'amhyb', 'Ah.11g048900' => 'amhyb', 'Ah.11g049910' => 'amhyb', 'AL1G13870' => 'aly', 'AL1G13880' => 'aly', 'AL1G16760' => 'aly', 'AL390U10020' => 'aly', 'AL4G25520' => 'aly', 'AL6G19890' => 'aly', 'AL6G19900' => 'aly', 'AL6G19910' => 'aly', 'AL8G40100' => 'aly', 'Aqoxy2G03562' => 'aox', 'Aqoxy5G00316' => 'aox', 'Aqoxy5G00926' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1628KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1H403S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2FU6SJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.882I6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8YRY2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YN1SN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AF70II' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZA8L1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F916KL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHRD8H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KTZ8QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S22EMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8M29T' => 'arhy', 'AT1G04270' => 'ath', 'AT1G04280' => 'ath', 'AT1G06750' => 'ath', 'AT1G33850' => 'ath', 'AT2G30630' => 'ath', 'AT5G09490' => 'ath', 'AT5G09500' => 'ath', 'AT5G09510' => 'ath', 'AT5G43640' => 'ath', 'AT5G63070' => 'ath', 'ATR0605G315' => 'atr', 'Atru.chr11.175' => 'acertr', 'Atru.chr11.653' => 'acertr', 'Atru.chr3.1616' => 'acertr', 'Atru.chr4.2230' => 'acertr', 'Atru.chr4.2232' => 'acertr', 'Atru.chr5.1598' => 'acertr', 'Atru.chr5.1600' => 'acertr', 'Atru.chr5.2188' => 'acertr', 'AUR62008326' => 'cqu', 'AUR62011922' => 'cqu', 'AUR62011924' => 'cqu', 'AUR62021771' => 'cqu', 'AUR62032237' => 'cqu', 'AUR62032240' => 'cqu', 'BcaB01g05572' => 'bca', 'BcaB02g10337' => 'bca', 'BcaB04g19944' => 'bca', 'BcaB05g21548' => 'bca', 'BcaB05g21549' => 'bca', 'BcaB05g23227' => 'bca', 'BcaB06g26256' => 'bca', 'BcaB06g26257' => 'bca', 'BcaB06g28379' => 'bca', 'BcaC02g11159' => 'bca', 'BcaC03g13258' => 'bca', 'BcaC03g13259' => 'bca', 'BcaC05g24456' => 'bca', 'BcaC05g24457' => 'bca', 'BcaC07g36922' => 'bca', 'BcaC07g36923' => 'bca', 'BcaC07g42050' => 'bca', 'BcaC07g42176' => 'bca', 'BcaC07g42195' => 'bca', 'BcaC07g42196' => 'bca', 'BcaNung06674' => 'bca', 'BolC2t06351H' => 'bol', 'BolC2t06352H' => 'bol', 'BolC3t12993H' => 'bol', 'BolC4t23525H' => 'bol', 'BolC4t27475H' => 'bol', 'BolC5t29025H' => 'bol', 'BolC5t29026H' => 'bol', 'BolC8t46898H' => 'bol', 'BolC8t46899H' => 'bol', 'BolC8t52630H' => 'bol', 'BolC8t52765H' => 'bol', 'BolC9t53824H' => 'bol', 'BraA03t09760Z' => 'bra', 'BraA03t10990Z' => 'bra', 'BraA05t20413Z' => 'bra', 'BraA08t35602Z' => 'bra', 'BraA09t36458Z' => 'bra', 'BraA09t42018Z' => 'bra', 'BraA09t42129Z' => 'bra', 'BraA10t42536Z' => 'bra', 'BraA10t42537Z' => 'bra', 'C01p10690' => 'bna', 'C02p03890' => 'bna', 'C02p03900' => 'bna', 'C03p04620' => 'bna', 'C04p19870' => 'bna', 'C04p59670' => 'bna', 'C05p02460' => 'bna', 'C05p02470' => 'bna', 'C08p00980' => 'bna', 'C08p00990' => 'bna', 'C08p51030' => 'bna', 'C08p52360' => 'bna', 'C09p09120' => 'bna', 'CAN.G19.15' => 'can', 'CAN.G251.10' => 'can', 'CAN.G251.9' => 'can', 'CAN.G398.24' => 'can', 'CAN.G410.32' => 'can', 'CAN.G881.2' => 'can', 'CANSAT01G3025' => 'cansat', 'CANSAT78G1211' => 'cansat', 'CANSAT78G1218' => 'cansat', 'CANSAT78G1521' => 'cansat', 'CANSAT78G1670' => 'cansat', 'CARHR003600' => 'chi', 'CARHR003610' => 'chi', 'CARHR006290' => 'chi', 'CARHR006430' => 'chi', 'CARHR124110' => 'chi', 'CARHR203870' => 'chi', 'CARHR203880' => 'chi', 'CARHR203890' => 'chi', 'CARHR276880' => 'chi', 'Carub.0001s0346' => 'cru', 'Carub.0001s0347' => 'cru', 'Carub.0001s0607' => 'cru', 'Carub.0003s2768' => 'cru', 'Carub.0003s2769' => 'cru', 'Carub.0004s1178' => 'cru', 'Carub.0006s0806' => 'cru', 'Carub.0006s0807' => 'cru', 'Carub.0006s0808' => 'cru', 'Carub.0008s0501' => 'cru', 'Carub.0008s2379' => 'cru', 'Ca_08655_v3' => 'car', 'Ca_08922_v3' => 'car', 'Ca_08923_v3' => 'car', 'Ca_09119_v3' => 'car', 'Ca_09703_v3' => 'car', 'Ca_09705_v3' => 'car', 'Ca_09835_v3' => 'car', 'Ca_26403_v3' => 'car', 'Ca_30719_v3' => 'car', 'CBR_g17958' => 'cbr', 'CBR_g40516' => 'cbr', 'Cc00_g05350' => 'ccan', 'Cc01_g18690' => 'ccan', 'Cc03_g04830' => 'ccan', 'Cc03_g04850' => 'ccan', 'CDE02G4469' => 'cde', 'CDE06G0883' => 'cde', 'CDE06G1295' => 'cde', 'CDE06G1390' => 'cde', 'CDE07G0584' => 'cde', 'CDE07G1084' => 'cde', 'CDE08G1259' => 'cde', 'Cfa002341' => 'cfa', 'Cfa024337' => 'cfa', 'Ciclev10004749m.g' => 'ccl', 'Ciclev10006127m.g' => 'ccl', 'Ciclev10019720m.g' => 'ccl', 'Ciclev10022652m.g' => 'ccl', 'CiPaw.01G190400' => 'cil', 'CiPaw.01G190500' => 'cil', 'CiPaw.02G116400' => 'cil', 'CiPaw.02G116500' => 'cil', 'CiPaw.04G183000' => 'cil', 'CiPaw.04G183300' => 'cil', 'ClCG05G004610' => 'cla', 'ClCG05G004620' => 'cla', 'ClCG06G006730' => 'cla', 'ClCG06G006740' => 'cla', 'ClCG11G003690' => 'cla', 'COL.COLO4_08276' => 'col', 'COL.COLO4_08277' => 'col', 'COL.COLO4_15787' => 'col', 'COL.COLO4_15789' => 'col', 'Cpa.g.c44815' => 'cpa', 'Cpa.g.sc52.144' => 'cpa', 'Cpa.g.sc58.46' => 'cpa', 'Cpa.g.sc58.47' => 'cpa', 'Cre08.g360900' => 'cre', 'CsaV3_2G013030' => 'csa', 'CsaV3_2G013050' => 'csa', 'CsaV3_2G015620' => 'csa', 'CsaV3_3G012590' => 'csa', 'CsaV3_3G012600' => 'csa', 'CSS0001641' => 'camsi', 'CSS0008310' => 'camsi', 'CSS0013011' => 'camsi', 'CSS0017147' => 'camsi', 'CSS0022970' => 'camsi', 'CSS0025655' => 'camsi', 'CSS0028665' => 'camsi', 'CSS0029117' => 'camsi', 'CSS0032024' => 'camsi', 'CSS0039681' => 'camsi', 'CSS0046516' => 'camsi', 'CSS0050307' => 'camsi', 'DCAR_005871' => 'dca', 'DCAR_007342' => 'dca', 'DCAR_024228' => 'dca', 'DCAR_027277' => 'dca', 'DCAR_030718' => 'dca', 'Dinv20287' => 'din', 'Dinv22461' => 'din', 'Dinv22464' => 'din', 'Dinv29912' => 'din', 'Dinv29913' => 'din', 'Dinv34580' => 'din', 'Dinv34582' => 'din', 'Dinv44632' => 'din', 'Duzib052G0266' => 'dzi', 'Duzib133G0907' => 'dzi', 'Duzib133G1034' => 'dzi', 'Duzib138G0207' => 'dzi', 'Duzib138G0491' => 'dzi', 'Duzib151G0812' => 'dzi', 'Duzib151G1166' => 'dzi', 'Duzib168G0192' => 'dzi', 'Duzib211G0077' => 'dzi', 'Duzib212G0429' => 'dzi', 'Duzib212G0472' => 'dzi', 'ECA233G2617' => 'eca', 'ECA236G4188' => 'eca', 'ECA240G0936' => 'eca', 'ECA240G1129' => 'eca', 'ECA247G0623' => 'eca', 'EL10Ac5g10451' => 'bvu', 'EL10Ac5g10453' => 'bvu', 'EL10Ac5g10894' => 'bvu', 'Eucgr.H00192' => 'egr', 'Eucgr.H00193' => 'egr', 'Eucgr.H00194' => 'egr', 'Eucgr.J01562' => 'egr', 'Eucgr.K03301' => 'egr', 'FAN02G0632' => 'fan', 'FAN05G5378' => 'fan', 'FAN09G3247' => 'fan', 'FAN12G0435' => 'fan', 'FAN12G2426' => 'fan', 'FAN14G1707' => 'fan', 'FAN14G4725' => 'fan', 'FAN15G2071' => 'fan', 'FAN17G3065' => 'fan', 'FAN19G1376' => 'fan', 'FAN20G0354' => 'fan', 'FAN20G2429' => 'fan', 'FAN20G2658' => 'fan', 'FAN24G2343' => 'fan', 'FAN27G2362' => 'fan', 'FAN28G1765' => 'fan', 'FvH4_1g16020' => 'fve', 'FvH4_2g04890' => 'fve', 'FvH4_2g22270' => 'fve', 'FvH4_4g02630' => 'fve', 'FvH4_4g02640' => 'fve', 'FvH4_6g02650' => 'fve', 'Glyma.02G140600' => 'gma', 'Glyma.03G159900' => 'gma', 'Glyma.05G234800' => 'gma', 'Glyma.07G269600' => 'gma', 'Glyma.08G042300' => 'gma', 'Glyma.10G033500' => 'gma', 'Glyma.10G185200' => 'gma', 'Glyma.17G004300' => 'gma', 'Glyma.19G161900' => 'gma', 'Glyma.20G205100' => 'gma', 'Glyma.20G205200' => 'gma', 'Gohir.A01G139101' => 'ghi', 'Gohir.A02G035600' => 'ghi', 'Gohir.A02G117901' => 'ghi', 'Gohir.A07G210100' => 'ghi', 'Gohir.A07G210200' => 'ghi', 'Gohir.A08G061100' => 'ghi', 'Gohir.A09G223000' => 'ghi', 'Gohir.A09G223100' => 'ghi', 'Gohir.A10G113900' => 'ghi', 'Gohir.A10G114000' => 'ghi', 'Gohir.D02G042300' => 'ghi', 'Gohir.D07G216100' => 'ghi', 'Gohir.D07G216200' => 'ghi', 'Gohir.D08G070400' => 'ghi', 'Gohir.D09G225000' => 'ghi', 'Gohir.D09G225100' => 'ghi', 'Gohir.D10G152300' => 'ghi', 'Gohir.D10G153200' => 'ghi', 'Gohir.D11G133701' => 'ghi', 'Gorai.004G074100' => 'gra', 'Gorai.005G046800' => 'gra', 'Gorai.006G246500' => 'gra', 'Gorai.006G246600' => 'gra', 'Gorai.007G142900' => 'gra', 'Gorai.011G171000' => 'gra', 'Gorai.011G171100' => 'gra', 'Gorai.013G104300' => 'gra', 'Gorai.013G104400' => 'gra', 'GSVIVG01000754001' => 'vvi', 'GSVIVG01000756001' => 'vvi', 'GSVIVG01010903001' => 'vvi', 'GSVIVG01017623001' => 'vvi', 'GSVIVG01018113001' => 'vvi', 'GSVIVG01018116001' => 'vvi', 'GSVIVG01018118001' => 'vvi', 'HanXRQChr03g0076211' => 'han', 'HanXRQChr03g0092431' => 'han', 'HanXRQChr03g0092441' => 'han', 'HanXRQChr03g0092591' => 'han', 'HanXRQChr03g0092671' => 'han', 'HanXRQChr03g0092681' => 'han', 'HanXRQChr03g0092691' => 'han', 'HanXRQChr03g0092701' => 'han', 'HanXRQChr03g0092721' => 'han', 'HanXRQChr03g0092731' => 'han', 'HanXRQChr04g0113681' => 'han', 'HanXRQChr10g0281371' => 'han', 'HanXRQChr11g0337141' => 'han', 'HanXRQChr13g0424521' => 'han', 'HanXRQChr13g0424531' => 'han', 'HanXRQChr13g0424541' => 'han', 'HanXRQChr16g0498221' => 'han', 'Haze_04377' => 'cav', 'Haze_11298' => 'cav', 'Haze_24547' => 'cav', 'Haze_24550' => 'cav', 'Haze_26587' => 'cav', 'Hma1.2p1_0650F.1_g195410' => 'hma', 'Hma1.2p1_0893F.1_g233470' => 'hma', 'HPP92_006508' => 'vpl', 'HPP92_024780' => 'vpl', 'Hund02688' => 'sun', 'Hund09380' => 'sun', 'Hund09381' => 'sun', 'Hund09832' => 'sun', 'Hund09833' => 'sun', 'Hund11351' => 'sun', 'Hund11513' => 'sun', 'Lalb_Chr06g0162591' => 'lal', 'Lalb_Chr06g0162601' => 'lal', 'Lalb_Chr06g0169321' => 'lal', 'Lalb_Chr09g0330951' => 'lal', 'Lalb_Chr16g0387631' => 'lal', 'Lalb_Chr21g0306241' => 'lal', 'Lalb_Chr25g0290051' => 'lal', 'Lalb_Chr25g0290061' => 'lal', 'Lalb_Chr25g0290071' => 'lal', 'Lj1g0003876' => 'lja', 'Lj1P1207T36' => 'lonja', 'Lj2C1156G12' => 'lonja', 'Lj3A793G39' => 'lonja', 'Lj3C580G2' => 'lonja', 'Lj3C780G2' => 'lonja', 'Lj3C780T4' => 'lonja', 'Lj3C793G9' => 'lonja', 'Lj4g0012960' => 'lja', 'Lj5g0021252' => 'lja', 'Lj5g0021484' => 'lja', 'Lj5g0024528' => 'lja', 'Lj6A399T12' => 'lonja', 'Lj6A656G65' => 'lonja', 'Lsat_1_v5_gn_3_125500' => 'lsa', 'Lsat_1_v5_gn_3_125540' => 'lsa', 'Lsat_1_v5_gn_5_72701' => 'lsa', 'Lsat_1_v5_gn_8_91560' => 'lsa', 'Lsat_1_v5_gn_9_9640' => 'lsa', 'Manes.01G200600' => 'mes', 'Manes.01G200700' => 'mes', 'Manes.03G168900' => 'mes', 'Manes.03G169000' => 'mes', 'Manes.05G085801' => 'mes', 'Manes.05G086200' => 'mes', 'Manes.15G036700' => 'mes', 'Manes.15G036900' => 'mes', 'Mapoly0004s0172' => 'mpo', 'Mapoly0023s0001' => 'mpo', 'Mapoly0142s0012' => 'mpo', 'MBI01_g32854_MAGBIO' => 'mbi', 'MBI11_g24427_MAGBIO' => 'mbi', 'MBI11_g47319_MAGBIO' => 'mbi', 'MCO01G433' => 'mco', 'MD00G1187800' => 'mdo', 'MD04G1226500' => 'mdo', 'MD05G1203900' => 'mdo', 'MD10G1191100' => 'mdo', 'MD12G1243500' => 'mdo', 'MD13G1207000' => 'mdo', 'MD13G1207100' => 'mdo', 'MD16G1208600' => 'mdo', 'Medtr1g050352' => 'mtr', 'Medtr1g070385' => 'mtr', 'Medtr1g070450' => 'mtr', 'Medtr1g075200' => 'mtr', 'Medtr1g075250' => 'mtr', 'Medtr1g075260' => 'mtr', 'Medtr1g475250' => 'mtr', 'Medtr4g075450' => 'mtr', 'Medtr7g096300' => 'mtr', 'Medtr8g105110' => 'mtr', 'MELO3C006470.2' => 'cme', 'MELO3C006471.2' => 'cme', 'MELO3C020772.2' => 'cme', 'MELO3C026780.2' => 'cme', 'MELO3C026781.2' => 'cme', 'Migut.D00390' => 'egut', 'Migut.G00435' => 'egut', 'Migut.G00436' => 'egut', 'Migut.G00718' => 'egut', 'MSTRG.21891' => 'ama', 'MSTRG.26910' => 'ama', 'MSTRG.4099' => 'ama', 'MSTRG.9925' => 'ama', 'Nitab4.5_0000165g0010' => 'nta', 'Nitab4.5_0000209g0180' => 'nta', 'Nitab4.5_0000244g0440' => 'nta', 'Nitab4.5_0000525g0220' => 'nta', 'Nitab4.5_0001597g0020' => 'nta', 'Nitab4.5_0001878g0040' => 'nta', 'Nitab4.5_0001878g0060' => 'nta', 'Nitab4.5_0002838g0100' => 'nta', 'Nitab4.5_0002838g0120' => 'nta', 'Nitab4.5_0004798g0030' => 'nta', 'Nitab4.5_0005420g0010' => 'nta', 'Nitab4.5_0005507g0010' => 'nta', 'Nitab4.5_0005574g0020' => 'nta', 'Nitab4.5_0005838g0010' => 'nta', 'Nitab4.5_0010580g0020' => 'nta', 'Nn1g02599' => 'nnu', 'Nn1g02608' => 'nnu', 'Nn3g17742' => 'nnu', 'Nn3g19534' => 'nnu', 'Nn3g19535' => 'nnu', 'Oeu008790.1' => 'oeu', 'Oeu008792.1' => 'oeu', 'Oeu032590.1' => 'oeu', 'Oeu035349.1' => 'oeu', 'Oeu049791.1' => 'oeu', 'Os01g0774500' => 'osa', 'Os03g0628800' => 'osa', 'Os03g0798600' => 'osa', 'Os05g0508800' => 'osa', 'Peaxi162Scf00036g02018' => 'pax', 'Peaxi162Scf00578g00032' => 'pax', 'Peaxi162Scf00578g00317' => 'pax', 'Peaxi162Scf00785g00114' => 'pax', 'Peaxi162Scf00813g00119' => 'pax', 'Peaxi162Scf00906g00227' => 'pax', 'PGR004G0875' => 'pgr', 'PGR004G2424' => 'pgr', 'PGR031G1239' => 'pgr', 'PGR031G2474' => 'pgr', 'PGR044G0423' => 'pgr', 'PGSC0003DMG400001128' => 'stu', 'PGSC0003DMG400007336' => 'stu', 'PGSC0003DMG400016318' => 'stu', 'PGSC0003DMG400016319' => 'stu', 'PGSC0003DMG400018074' => 'stu', 'Phvul.001G157700' => 'pvu', 'Phvul.002G148550' => 'pvu', 'Phvul.002G320200' => 'pvu', 'Phvul.003G089200' => 'pvu', 'Phvul.007G126000' => 'pvu', 'Phvul.007G126100' => 'pvu', 'Phvul.007G178000' => 'pvu', 'Phvul.007G178200' => 'pvu', 'Potri.002G043000' => 'ptr', 'Potri.002G043200' => 'ptr', 'Potri.003G123750' => 'ptr', 'Potri.005G055401' => 'ptr', 'Potri.005G219700' => 'ptr', 'Potri.005G220000' => 'ptr', 'Potri.008G161901' => 'ptr', 'Potri.008G162000' => 'ptr', 'Potri.008G162400' => 'ptr', 'Potri.010G076900' => 'ptr', 'Pp3c12_9180' => 'ppa', 'Pp3c13_19770' => 'ppa', 'Pp3c14_22950' => 'ppa', 'Pp3c16_12160' => 'ppa', 'Pp3c27_7820' => 'ppa', 'Pp3c2_3490' => 'ppa', 'Pp3c3_23700' => 'ppa', 'Pp3c3_36520' => 'ppa', 'Pp3c4_15250' => 'ppa', 'PRCOL_00007002' => 'pco', 'Prupe.1G030600' => 'ppe', 'Prupe.1G030700' => 'ppe', 'Prupe.6G345200' => 'ppe', 'Prupe.8G230300' => 'ppe', 'Prupe.8G230500' => 'ppe', 'Psat3g059600' => 'psa', 'Psat5g200920' => 'psa', 'Psat6g056440' => 'psa', 'Psat6g057360' => 'psa', 'Psat6g134120' => 'psa', 'Psat6g134160' => 'psa', 'Psat7g008640' => 'psa', 'Psat7g185240' => 'psa', 'PSO017G1330' => 'pso', 'PSO063G6097' => 'pso', 'PSO170G0835' => 'pso', 'PSO170G2499' => 'pso', 'PSO210G5058' => 'pso', 'PSO210G6154' => 'pso', 'PSO585G0031' => 'pso', 'PSO832G0264' => 'pso', 'PSO832G4288' => 'pso', 'QL03p027355' => 'qlo', 'QL03p027430' => 'qlo', 'QL04p081380' => 'qlo', 'QL06p015642' => 'qlo', 'QL06p015650' => 'qlo', 'QL06p015686' => 'qlo', 'QL12p042927' => 'qlo', 'QL93p1863_0035' => 'qlo', 'RcHm_v2.0_Chr3g0450581' => 'rch', 'RcHm_v2.0_Chr4g0390371' => 'rch', 'RcHm_v2.0_Chr4g0390381' => 'rch', 'RcHm_v2.0_Chr4g0390491' => 'rch', 'RcHm_v2.0_Chr4g0390501' => 'rch', 'RcHm_v2.0_Chr6g0289231' => 'rch', 'Rhsim04G0190400' => 'rsi', 'Rhsim04G0190500' => 'rsi', 'Rhsim04G0190600' => 'rsi', 'Rhsim13G0031400' => 'rsi', 'Rhsim13G0165600' => 'rsi', 'RhsimUnG0114600' => 'rsi', 'RhsimUnG0114700' => 'rsi', 'Sabra02G0034800' => 'sbr', 'Sabra02G0035100' => 'sbr', 'Sabra05G0168600' => 'sbr', 'Sabra05G0168800' => 'sbr', 'Sabra08G0123700' => 'sbr', 'Sabra10G0031900' => 'sbr', 'Sabra13G0039000' => 'sbr', 'SalBow2G0782' => 'sbo', 'SalBow2G1403' => 'sbo', 'SalBow4G0074' => 'sbo', 'SalBow4G2635' => 'sbo', 'SalBow5G3010' => 'sbo', 'Sc05g0000870' => 'sci', 'Sc05g0000890' => 'sci', 'Sc13g0005000' => 'sci', 'Sc13g0005030' => 'sci', 'Sc19g0003790' => 'sci', 'Sc19g0003800' => 'sci', 'Sed0003467' => 'sed', 'Sed0009355' => 'sed', 'Sed0009894' => 'sed', 'Sed0011972' => 'sed', 'Sed0021483' => 'sed', 'Sed0021750' => 'sed', 'Sed0026279' => 'sed', 'SEGI_05312' => 'sgi', 'SEGI_10112' => 'sgi', 'SEGI_15835' => 'sgi', 'SEGI_30386' => 'sgi', 'SEGI_34122' => 'sgi', 'SEGI_35063' => 'sgi', 'SGA_v2.0_scaffold101G29794' => 'sas', 'SGA_v2.0_scaffold1G00573' => 'sas', 'SGA_v2.0_scaffold79G25637' => 'sas', 'SGA_v2.0_scaffold88G27283' => 'sas', 'SGA_v2.0_scaffold88G27285' => 'sas', 'SGA_v2.0_scaffold88G27331' => 'sas', 'SHI09937' => 'shi', 'SMO119G0302' => 'smo', 'SMO137G0231' => 'smo', 'SMO367G1151' => 'smo', 'Solyc02g082000.3' => 'sly', 'Solyc06g031670.3' => 'sly', 'Solyc06g053810.3' => 'sly', 'Solyc07g025457.1' => 'sly', 'Solyc08g059740.1' => 'sly', 'Solyc08g059750.3' => 'sly', 'Solyc09g083370.3' => 'sly', 'Solyc12g038950.3' => 'sly', 'Sopen02g026630' => 'spe', 'Sopen06g018930' => 'spe', 'Sopen06g018940' => 'spe', 'Sopen08g009460' => 'spe', 'Sopen09g032290' => 'spe', 'Sp1g03080' => 'spa', 'Sp1g03090' => 'spa', 'Sp1g05480' => 'spa', 'Sp2g07860' => 'spa', 'Sp2g08430' => 'spa', 'Sp2g08440' => 'spa', 'Sp2g26200' => 'spa', 'Sp4g13170' => 'spa', 'Sp6g33840' => 'spa', 'SpUn1204_0010' => 'spa', 'TAR365G0908' => 'tar', 'TAR381G1270' => 'tar', 'TAR381G1651' => 'tar', 'TAR625G1131' => 'tar', 'TAR633G0962' => 'tar', 'TAR633G1729' => 'tar', 'TAR633G1864' => 'tar', 'TAR636G0221' => 'tar', 'TAR636G0314' => 'tar', 'TAR636G3202' => 'tar', 'THA.LOC104800805' => 'tha', 'THA.LOC104801096' => 'tha', 'THA.LOC104801555' => 'tha', 'THA.LOC104808491' => 'tha', 'THA.LOC104808595' => 'tha', 'THA.LOC104815985' => 'tha', 'THA.LOC104822250' => 'tha', 'THA.LOC104826071' => 'tha', 'Thecc.01G265200' => 'tca', 'Thecc.01G265300' => 'tca', 'Thecc.01G265700' => 'tca', 'Thecc.03G109100' => 'tca', 'Thecc.04G245900' => 'tca', 'Thecc.04G246000' => 'tca', 'Thhalv10003334m.g' => 'esa', 'Thhalv10005508m.g' => 'esa', 'Thhalv10005643m.g' => 'esa', 'Thhalv10007316m.g' => 'esa', 'Thhalv10009006m.g' => 'esa', 'Thhalv10009309m.g' => 'esa', 'Thhalv10014917m.g' => 'esa', 'Thhalv10014919m.g' => 'esa', 'Thhalv10015393m.g' => 'esa', 'Thhalv10016515m.g' => 'esa', 'Thhalv10029242m.g' => 'esa', 'TPR.G16654' => 'tpr', 'TPR.G20589' => 'tpr', 'TPR.G23029' => 'tpr', 'TPR.G27731' => 'tpr', 'TPR.G28889' => 'tpr', 'TPR.G28899' => 'tpr', 'TPR.G30846' => 'tpr', 'TPR.G5452' => 'tpr', 'TPR.G5713' => 'tpr', 'TPR.G9046' => 'tpr', 'TPR.G9061' => 'tpr', 'TWI09G1075' => 'twi', 'TWI12G0806' => 'twi', 'TWI18G0108' => 'twi', 'TWI53G1361' => 'twi', 'TWI73G0185' => 'twi', 'TWI73G0427' => 'twi', 'unitig_37.g12001' => 'ugi', 'unitig_747.g21660' => 'ugi', 'unitig_748.g7232' => 'ugi', 'unitig_748.g7315' => 'ugi', 'unitig_85.g27262' => 'ugi', 'unitig_92.g28220' => 'ugi', 'vmacro02632' => 'vma', 'vmacro08410' => 'vma', 'vmacro08411' => 'vma', 'vmacro15407' => 'vma', 'VMungo0251G3619' => 'vmu', 'VMungo0720G1204' => 'vmu', 'VMungo0720G1918' => 'vmu', 'VMungo0720G2387' => 'vmu', 'VMungo0720G2961' => 'vmu', 'VMungo1215G2154' => 'vmu', 'VMungo1383G2411' => 'vmu', 'Zm00001eb051130' => 'zma', 'Zm00001eb116830' => 'zma', 'Zm00001eb116850' => 'zma', 'Zm00001eb151740' => 'zma', 'Zm00001eb292360' => 'zma', 'Zm00001eb301640' => 'zma' ) $gf_id = 'HOM05D000856' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000856' ) $data_identifier = 'HOM05D000856' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 13, 'ath' => (int) 10, 'atr' => (int) 1, 'acertr' => (int) 8, 'cqu' => (int) 6, 'bca' => (int) 21, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 11, 'car' => (int) 9, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 8, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 5, 'fan' => (int) 16, 'fve' => (int) 6, 'gma' => (int) 11, 'ghi' => (int) 19, 'gra' => (int) 9, 'vvi' => (int) 7, 'han' => (int) 17, 'cav' => (int) 5, 'hma' => (int) 2, 'vpl' => (int) 2, 'sun' => (int) 7, 'lal' => (int) 9, 'lja' => (int) 5, 'lonja' => (int) 9, 'lsa' => (int) 5, 'mes' => (int) 8, 'mpo' => (int) 3, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 10, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 15, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 9, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 9, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 6, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 5, 'spa' => (int) 10, 'tar' => (int) 10, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 11, 'tpr' => (int) 11, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 4, 'vmu' => (int) 7, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb301640' $species_info = array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ) $local_species = 'pso' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000856', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p00010' => 'bna', 'A03p04160' => 'bna', 'A03p17160' => 'bna', 'A04p23370' => 'bna', 'A05p14860' => 'bna', 'A08p37020' => 'bna', 'A09p08050' => 'bna', 'A09p66800' => 'bna', 'A09p67940' => 'bna', 'A10p02680' => 'bna', 'A10p05320' => 'bna', 'Aa31LG1G20560' => 'aar', 'Aa31LG1G20610' => 'aar', 'Aa31LG1G7810' => 'aar', 'Aa31LG5G3590' => 'aar', 'Aa31LG5G6140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3819' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4683' => 'aag', 'Actinidia04480' => 'ach', 'Actinidia05466' => 'ach', 'Actinidia08445' => 'ach', 'Actinidia21170' => 'ach', 'Actinidia24812' => 'ach', 'Actinidia24951' => 'ach', 'Actinidia40088' => 'ach', 'Ah.02g111660' => 'amhyb', 'Ah.11g048900' => 'amhyb', 'Ah.11g049910' => 'amhyb', 'AL1G13870' => 'aly', 'AL1G13880' => 'aly', 'AL1G16760' => 'aly', 'AL390U10020' => 'aly', 'AL4G25520' => 'aly', 'AL6G19890' => 'aly', 'AL6G19900' => 'aly', 'AL6G19910' => 'aly', 'AL8G40100' => 'aly', 'Aqoxy2G03562' => 'aox', 'Aqoxy5G00316' => 'aox', 'Aqoxy5G00926' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1628KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1H403S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2FU6SJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.882I6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8YRY2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YN1SN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AF70II' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZA8L1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F916KL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHRD8H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KTZ8QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S22EMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8M29T' => 'arhy', 'AT1G04270' => 'ath', 'AT1G04280' => 'ath', 'AT1G06750' => 'ath', 'AT1G33850' => 'ath', 'AT2G30630' => 'ath', 'AT5G09490' => 'ath', 'AT5G09500' => 'ath', 'AT5G09510' => 'ath', 'AT5G43640' => 'ath', 'AT5G63070' => 'ath', 'ATR0605G315' => 'atr', 'Atru.chr11.175' => 'acertr', 'Atru.chr11.653' => 'acertr', 'Atru.chr3.1616' => 'acertr', 'Atru.chr4.2230' => 'acertr', 'Atru.chr4.2232' => 'acertr', 'Atru.chr5.1598' => 'acertr', 'Atru.chr5.1600' => 'acertr', 'Atru.chr5.2188' => 'acertr', 'AUR62008326' => 'cqu', 'AUR62011922' => 'cqu', 'AUR62011924' => 'cqu', 'AUR62021771' => 'cqu', 'AUR62032237' => 'cqu', 'AUR62032240' => 'cqu', 'BcaB01g05572' => 'bca', 'BcaB02g10337' => 'bca', 'BcaB04g19944' => 'bca', 'BcaB05g21548' => 'bca', 'BcaB05g21549' => 'bca', 'BcaB05g23227' => 'bca', 'BcaB06g26256' => 'bca', 'BcaB06g26257' => 'bca', 'BcaB06g28379' => 'bca', 'BcaC02g11159' => 'bca', 'BcaC03g13258' => 'bca', 'BcaC03g13259' => 'bca', 'BcaC05g24456' => 'bca', 'BcaC05g24457' => 'bca', 'BcaC07g36922' => 'bca', 'BcaC07g36923' => 'bca', 'BcaC07g42050' => 'bca', 'BcaC07g42176' => 'bca', 'BcaC07g42195' => 'bca', 'BcaC07g42196' => 'bca', 'BcaNung06674' => 'bca', 'BolC2t06351H' => 'bol', 'BolC2t06352H' => 'bol', 'BolC3t12993H' => 'bol', 'BolC4t23525H' => 'bol', 'BolC4t27475H' => 'bol', 'BolC5t29025H' => 'bol', 'BolC5t29026H' => 'bol', 'BolC8t46898H' => 'bol', 'BolC8t46899H' => 'bol', 'BolC8t52630H' => 'bol', 'BolC8t52765H' => 'bol', 'BolC9t53824H' => 'bol', 'BraA03t09760Z' => 'bra', 'BraA03t10990Z' => 'bra', 'BraA05t20413Z' => 'bra', 'BraA08t35602Z' => 'bra', 'BraA09t36458Z' => 'bra', 'BraA09t42018Z' => 'bra', 'BraA09t42129Z' => 'bra', 'BraA10t42536Z' => 'bra', 'BraA10t42537Z' => 'bra', 'C01p10690' => 'bna', 'C02p03890' => 'bna', 'C02p03900' => 'bna', 'C03p04620' => 'bna', 'C04p19870' => 'bna', 'C04p59670' => 'bna', 'C05p02460' => 'bna', 'C05p02470' => 'bna', 'C08p00980' => 'bna', 'C08p00990' => 'bna', 'C08p51030' => 'bna', 'C08p52360' => 'bna', 'C09p09120' => 'bna', 'CAN.G19.15' => 'can', 'CAN.G251.10' => 'can', 'CAN.G251.9' => 'can', 'CAN.G398.24' => 'can', 'CAN.G410.32' => 'can', 'CAN.G881.2' => 'can', 'CANSAT01G3025' => 'cansat', 'CANSAT78G1211' => 'cansat', 'CANSAT78G1218' => 'cansat', 'CANSAT78G1521' => 'cansat', 'CANSAT78G1670' => 'cansat', 'CARHR003600' => 'chi', 'CARHR003610' => 'chi', 'CARHR006290' => 'chi', 'CARHR006430' => 'chi', 'CARHR124110' => 'chi', 'CARHR203870' => 'chi', 'CARHR203880' => 'chi', 'CARHR203890' => 'chi', 'CARHR276880' => 'chi', 'Carub.0001s0346' => 'cru', 'Carub.0001s0347' => 'cru', 'Carub.0001s0607' => 'cru', 'Carub.0003s2768' => 'cru', 'Carub.0003s2769' => 'cru', 'Carub.0004s1178' => 'cru', 'Carub.0006s0806' => 'cru', 'Carub.0006s0807' => 'cru', 'Carub.0006s0808' => 'cru', 'Carub.0008s0501' => 'cru', 'Carub.0008s2379' => 'cru', 'Ca_08655_v3' => 'car', 'Ca_08922_v3' => 'car', 'Ca_08923_v3' => 'car', 'Ca_09119_v3' => 'car', 'Ca_09703_v3' => 'car', 'Ca_09705_v3' => 'car', 'Ca_09835_v3' => 'car', 'Ca_26403_v3' => 'car', 'Ca_30719_v3' => 'car', 'CBR_g17958' => 'cbr', 'CBR_g40516' => 'cbr', 'Cc00_g05350' => 'ccan', 'Cc01_g18690' => 'ccan', 'Cc03_g04830' => 'ccan', 'Cc03_g04850' => 'ccan', 'CDE02G4469' => 'cde', 'CDE06G0883' => 'cde', 'CDE06G1295' => 'cde', 'CDE06G1390' => 'cde', 'CDE07G0584' => 'cde', 'CDE07G1084' => 'cde', 'CDE08G1259' => 'cde', 'Cfa002341' => 'cfa', 'Cfa024337' => 'cfa', 'Ciclev10004749m.g' => 'ccl', 'Ciclev10006127m.g' => 'ccl', 'Ciclev10019720m.g' => 'ccl', 'Ciclev10022652m.g' => 'ccl', 'CiPaw.01G190400' => 'cil', 'CiPaw.01G190500' => 'cil', 'CiPaw.02G116400' => 'cil', 'CiPaw.02G116500' => 'cil', 'CiPaw.04G183000' => 'cil', 'CiPaw.04G183300' => 'cil', 'ClCG05G004610' => 'cla', 'ClCG05G004620' => 'cla', 'ClCG06G006730' => 'cla', 'ClCG06G006740' => 'cla', 'ClCG11G003690' => 'cla', 'COL.COLO4_08276' => 'col', 'COL.COLO4_08277' => 'col', 'COL.COLO4_15787' => 'col', 'COL.COLO4_15789' => 'col', 'Cpa.g.c44815' => 'cpa', 'Cpa.g.sc52.144' => 'cpa', 'Cpa.g.sc58.46' => 'cpa', 'Cpa.g.sc58.47' => 'cpa', 'Cre08.g360900' => 'cre', 'CsaV3_2G013030' => 'csa', 'CsaV3_2G013050' => 'csa', 'CsaV3_2G015620' => 'csa', 'CsaV3_3G012590' => 'csa', 'CsaV3_3G012600' => 'csa', 'CSS0001641' => 'camsi', 'CSS0008310' => 'camsi', 'CSS0013011' => 'camsi', 'CSS0017147' => 'camsi', 'CSS0022970' => 'camsi', 'CSS0025655' => 'camsi', 'CSS0028665' => 'camsi', 'CSS0029117' => 'camsi', 'CSS0032024' => 'camsi', 'CSS0039681' => 'camsi', 'CSS0046516' => 'camsi', 'CSS0050307' => 'camsi', 'DCAR_005871' => 'dca', 'DCAR_007342' => 'dca', 'DCAR_024228' => 'dca', 'DCAR_027277' => 'dca', 'DCAR_030718' => 'dca', 'Dinv20287' => 'din', 'Dinv22461' => 'din', 'Dinv22464' => 'din', 'Dinv29912' => 'din', 'Dinv29913' => 'din', 'Dinv34580' => 'din', 'Dinv34582' => 'din', 'Dinv44632' => 'din', 'Duzib052G0266' => 'dzi', 'Duzib133G0907' => 'dzi', 'Duzib133G1034' => 'dzi', 'Duzib138G0207' => 'dzi', 'Duzib138G0491' => 'dzi', 'Duzib151G0812' => 'dzi', 'Duzib151G1166' => 'dzi', 'Duzib168G0192' => 'dzi', 'Duzib211G0077' => 'dzi', 'Duzib212G0429' => 'dzi', 'Duzib212G0472' => 'dzi', 'ECA233G2617' => 'eca', 'ECA236G4188' => 'eca', 'ECA240G0936' => 'eca', 'ECA240G1129' => 'eca', 'ECA247G0623' => 'eca', 'EL10Ac5g10451' => 'bvu', 'EL10Ac5g10453' => 'bvu', 'EL10Ac5g10894' => 'bvu', 'Eucgr.H00192' => 'egr', 'Eucgr.H00193' => 'egr', 'Eucgr.H00194' => 'egr', 'Eucgr.J01562' => 'egr', 'Eucgr.K03301' => 'egr', 'FAN02G0632' => 'fan', 'FAN05G5378' => 'fan', 'FAN09G3247' => 'fan', 'FAN12G0435' => 'fan', 'FAN12G2426' => 'fan', 'FAN14G1707' => 'fan', 'FAN14G4725' => 'fan', 'FAN15G2071' => 'fan', 'FAN17G3065' => 'fan', 'FAN19G1376' => 'fan', 'FAN20G0354' => 'fan', 'FAN20G2429' => 'fan', 'FAN20G2658' => 'fan', 'FAN24G2343' => 'fan', 'FAN27G2362' => 'fan', 'FAN28G1765' => 'fan', 'FvH4_1g16020' => 'fve', 'FvH4_2g04890' => 'fve', 'FvH4_2g22270' => 'fve', 'FvH4_4g02630' => 'fve', 'FvH4_4g02640' => 'fve', 'FvH4_6g02650' => 'fve', 'Glyma.02G140600' => 'gma', 'Glyma.03G159900' => 'gma', 'Glyma.05G234800' => 'gma', 'Glyma.07G269600' => 'gma', 'Glyma.08G042300' => 'gma', 'Glyma.10G033500' => 'gma', 'Glyma.10G185200' => 'gma', 'Glyma.17G004300' => 'gma', 'Glyma.19G161900' => 'gma', 'Glyma.20G205100' => 'gma', 'Glyma.20G205200' => 'gma', 'Gohir.A01G139101' => 'ghi', 'Gohir.A02G035600' => 'ghi', 'Gohir.A02G117901' => 'ghi', 'Gohir.A07G210100' => 'ghi', 'Gohir.A07G210200' => 'ghi', 'Gohir.A08G061100' => 'ghi', 'Gohir.A09G223000' => 'ghi', 'Gohir.A09G223100' => 'ghi', 'Gohir.A10G113900' => 'ghi', 'Gohir.A10G114000' => 'ghi', 'Gohir.D02G042300' => 'ghi', 'Gohir.D07G216100' => 'ghi', 'Gohir.D07G216200' => 'ghi', 'Gohir.D08G070400' => 'ghi', 'Gohir.D09G225000' => 'ghi', 'Gohir.D09G225100' => 'ghi', 'Gohir.D10G152300' => 'ghi', 'Gohir.D10G153200' => 'ghi', 'Gohir.D11G133701' => 'ghi', 'Gorai.004G074100' => 'gra', 'Gorai.005G046800' => 'gra', 'Gorai.006G246500' => 'gra', 'Gorai.006G246600' => 'gra', 'Gorai.007G142900' => 'gra', 'Gorai.011G171000' => 'gra', 'Gorai.011G171100' => 'gra', 'Gorai.013G104300' => 'gra', 'Gorai.013G104400' => 'gra', 'GSVIVG01000754001' => 'vvi', 'GSVIVG01000756001' => 'vvi', 'GSVIVG01010903001' => 'vvi', 'GSVIVG01017623001' => 'vvi', 'GSVIVG01018113001' => 'vvi', 'GSVIVG01018116001' => 'vvi', 'GSVIVG01018118001' => 'vvi', 'HanXRQChr03g0076211' => 'han', 'HanXRQChr03g0092431' => 'han', 'HanXRQChr03g0092441' => 'han', 'HanXRQChr03g0092591' => 'han', 'HanXRQChr03g0092671' => 'han', 'HanXRQChr03g0092681' => 'han', 'HanXRQChr03g0092691' => 'han', 'HanXRQChr03g0092701' => 'han', 'HanXRQChr03g0092721' => 'han', 'HanXRQChr03g0092731' => 'han', 'HanXRQChr04g0113681' => 'han', 'HanXRQChr10g0281371' => 'han', 'HanXRQChr11g0337141' => 'han', 'HanXRQChr13g0424521' => 'han', 'HanXRQChr13g0424531' => 'han', 'HanXRQChr13g0424541' => 'han', 'HanXRQChr16g0498221' => 'han', 'Haze_04377' => 'cav', 'Haze_11298' => 'cav', 'Haze_24547' => 'cav', 'Haze_24550' => 'cav', 'Haze_26587' => 'cav', 'Hma1.2p1_0650F.1_g195410' => 'hma', 'Hma1.2p1_0893F.1_g233470' => 'hma', 'HPP92_006508' => 'vpl', 'HPP92_024780' => 'vpl', 'Hund02688' => 'sun', 'Hund09380' => 'sun', 'Hund09381' => 'sun', 'Hund09832' => 'sun', 'Hund09833' => 'sun', 'Hund11351' => 'sun', 'Hund11513' => 'sun', 'Lalb_Chr06g0162591' => 'lal', 'Lalb_Chr06g0162601' => 'lal', 'Lalb_Chr06g0169321' => 'lal', 'Lalb_Chr09g0330951' => 'lal', 'Lalb_Chr16g0387631' => 'lal', 'Lalb_Chr21g0306241' => 'lal', 'Lalb_Chr25g0290051' => 'lal', 'Lalb_Chr25g0290061' => 'lal', 'Lalb_Chr25g0290071' => 'lal', 'Lj1g0003876' => 'lja', 'Lj1P1207T36' => 'lonja', 'Lj2C1156G12' => 'lonja', 'Lj3A793G39' => 'lonja', 'Lj3C580G2' => 'lonja', 'Lj3C780G2' => 'lonja', 'Lj3C780T4' => 'lonja', 'Lj3C793G9' => 'lonja', 'Lj4g0012960' => 'lja', 'Lj5g0021252' => 'lja', 'Lj5g0021484' => 'lja', 'Lj5g0024528' => 'lja', 'Lj6A399T12' => 'lonja', 'Lj6A656G65' => 'lonja', 'Lsat_1_v5_gn_3_125500' => 'lsa', 'Lsat_1_v5_gn_3_125540' => 'lsa', 'Lsat_1_v5_gn_5_72701' => 'lsa', 'Lsat_1_v5_gn_8_91560' => 'lsa', 'Lsat_1_v5_gn_9_9640' => 'lsa', 'Manes.01G200600' => 'mes', 'Manes.01G200700' => 'mes', 'Manes.03G168900' => 'mes', 'Manes.03G169000' => 'mes', 'Manes.05G085801' => 'mes', 'Manes.05G086200' => 'mes', 'Manes.15G036700' => 'mes', 'Manes.15G036900' => 'mes', 'Mapoly0004s0172' => 'mpo', 'Mapoly0023s0001' => 'mpo', 'Mapoly0142s0012' => 'mpo', 'MBI01_g32854_MAGBIO' => 'mbi', 'MBI11_g24427_MAGBIO' => 'mbi', 'MBI11_g47319_MAGBIO' => 'mbi', 'MCO01G433' => 'mco', 'MD00G1187800' => 'mdo', 'MD04G1226500' => 'mdo', 'MD05G1203900' => 'mdo', 'MD10G1191100' => 'mdo', 'MD12G1243500' => 'mdo', 'MD13G1207000' => 'mdo', 'MD13G1207100' => 'mdo', 'MD16G1208600' => 'mdo', 'Medtr1g050352' => 'mtr', 'Medtr1g070385' => 'mtr', 'Medtr1g070450' => 'mtr', 'Medtr1g075200' => 'mtr', 'Medtr1g075250' => 'mtr', 'Medtr1g075260' => 'mtr', 'Medtr1g475250' => 'mtr', 'Medtr4g075450' => 'mtr', 'Medtr7g096300' => 'mtr', 'Medtr8g105110' => 'mtr', 'MELO3C006470.2' => 'cme', 'MELO3C006471.2' => 'cme', 'MELO3C020772.2' => 'cme', 'MELO3C026780.2' => 'cme', 'MELO3C026781.2' => 'cme', 'Migut.D00390' => 'egut', 'Migut.G00435' => 'egut', 'Migut.G00436' => 'egut', 'Migut.G00718' => 'egut', 'MSTRG.21891' => 'ama', 'MSTRG.26910' => 'ama', 'MSTRG.4099' => 'ama', 'MSTRG.9925' => 'ama', 'Nitab4.5_0000165g0010' => 'nta', 'Nitab4.5_0000209g0180' => 'nta', 'Nitab4.5_0000244g0440' => 'nta', 'Nitab4.5_0000525g0220' => 'nta', 'Nitab4.5_0001597g0020' => 'nta', 'Nitab4.5_0001878g0040' => 'nta', 'Nitab4.5_0001878g0060' => 'nta', 'Nitab4.5_0002838g0100' => 'nta', 'Nitab4.5_0002838g0120' => 'nta', 'Nitab4.5_0004798g0030' => 'nta', 'Nitab4.5_0005420g0010' => 'nta', 'Nitab4.5_0005507g0010' => 'nta', 'Nitab4.5_0005574g0020' => 'nta', 'Nitab4.5_0005838g0010' => 'nta', 'Nitab4.5_0010580g0020' => 'nta', 'Nn1g02599' => 'nnu', 'Nn1g02608' => 'nnu', 'Nn3g17742' => 'nnu', 'Nn3g19534' => 'nnu', 'Nn3g19535' => 'nnu', 'Oeu008790.1' => 'oeu', 'Oeu008792.1' => 'oeu', 'Oeu032590.1' => 'oeu', 'Oeu035349.1' => 'oeu', 'Oeu049791.1' => 'oeu', 'Os01g0774500' => 'osa', 'Os03g0628800' => 'osa', 'Os03g0798600' => 'osa', 'Os05g0508800' => 'osa', 'Peaxi162Scf00036g02018' => 'pax', 'Peaxi162Scf00578g00032' => 'pax', 'Peaxi162Scf00578g00317' => 'pax', 'Peaxi162Scf00785g00114' => 'pax', 'Peaxi162Scf00813g00119' => 'pax', 'Peaxi162Scf00906g00227' => 'pax', 'PGR004G0875' => 'pgr', 'PGR004G2424' => 'pgr', 'PGR031G1239' => 'pgr', 'PGR031G2474' => 'pgr', 'PGR044G0423' => 'pgr', 'PGSC0003DMG400001128' => 'stu', 'PGSC0003DMG400007336' => 'stu', 'PGSC0003DMG400016318' => 'stu', 'PGSC0003DMG400016319' => 'stu', 'PGSC0003DMG400018074' => 'stu', 'Phvul.001G157700' => 'pvu', 'Phvul.002G148550' => 'pvu', 'Phvul.002G320200' => 'pvu', 'Phvul.003G089200' => 'pvu', 'Phvul.007G126000' => 'pvu', 'Phvul.007G126100' => 'pvu', 'Phvul.007G178000' => 'pvu', 'Phvul.007G178200' => 'pvu', 'Potri.002G043000' => 'ptr', 'Potri.002G043200' => 'ptr', 'Potri.003G123750' => 'ptr', 'Potri.005G055401' => 'ptr', 'Potri.005G219700' => 'ptr', 'Potri.005G220000' => 'ptr', 'Potri.008G161901' => 'ptr', 'Potri.008G162000' => 'ptr', 'Potri.008G162400' => 'ptr', 'Potri.010G076900' => 'ptr', 'Pp3c12_9180' => 'ppa', 'Pp3c13_19770' => 'ppa', 'Pp3c14_22950' => 'ppa', 'Pp3c16_12160' => 'ppa', 'Pp3c27_7820' => 'ppa', 'Pp3c2_3490' => 'ppa', 'Pp3c3_23700' => 'ppa', 'Pp3c3_36520' => 'ppa', 'Pp3c4_15250' => 'ppa', 'PRCOL_00007002' => 'pco', 'Prupe.1G030600' => 'ppe', 'Prupe.1G030700' => 'ppe', 'Prupe.6G345200' => 'ppe', 'Prupe.8G230300' => 'ppe', 'Prupe.8G230500' => 'ppe', 'Psat3g059600' => 'psa', 'Psat5g200920' => 'psa', 'Psat6g056440' => 'psa', 'Psat6g057360' => 'psa', 'Psat6g134120' => 'psa', 'Psat6g134160' => 'psa', 'Psat7g008640' => 'psa', 'Psat7g185240' => 'psa', 'PSO017G1330' => 'pso', 'PSO063G6097' => 'pso', 'PSO170G0835' => 'pso', 'PSO170G2499' => 'pso', 'PSO210G5058' => 'pso', 'PSO210G6154' => 'pso', 'PSO585G0031' => 'pso', 'PSO832G0264' => 'pso', 'PSO832G4288' => 'pso', 'QL03p027355' => 'qlo', 'QL03p027430' => 'qlo', 'QL04p081380' => 'qlo', 'QL06p015642' => 'qlo', 'QL06p015650' => 'qlo', 'QL06p015686' => 'qlo', 'QL12p042927' => 'qlo', 'QL93p1863_0035' => 'qlo', 'RcHm_v2.0_Chr3g0450581' => 'rch', 'RcHm_v2.0_Chr4g0390371' => 'rch', 'RcHm_v2.0_Chr4g0390381' => 'rch', 'RcHm_v2.0_Chr4g0390491' => 'rch', 'RcHm_v2.0_Chr4g0390501' => 'rch', 'RcHm_v2.0_Chr6g0289231' => 'rch', 'Rhsim04G0190400' => 'rsi', 'Rhsim04G0190500' => 'rsi', 'Rhsim04G0190600' => 'rsi', 'Rhsim13G0031400' => 'rsi', 'Rhsim13G0165600' => 'rsi', 'RhsimUnG0114600' => 'rsi', 'RhsimUnG0114700' => 'rsi', 'Sabra02G0034800' => 'sbr', 'Sabra02G0035100' => 'sbr', 'Sabra05G0168600' => 'sbr', 'Sabra05G0168800' => 'sbr', 'Sabra08G0123700' => 'sbr', 'Sabra10G0031900' => 'sbr', 'Sabra13G0039000' => 'sbr', 'SalBow2G0782' => 'sbo', 'SalBow2G1403' => 'sbo', 'SalBow4G0074' => 'sbo', 'SalBow4G2635' => 'sbo', 'SalBow5G3010' => 'sbo', 'Sc05g0000870' => 'sci', 'Sc05g0000890' => 'sci', 'Sc13g0005000' => 'sci', 'Sc13g0005030' => 'sci', 'Sc19g0003790' => 'sci', 'Sc19g0003800' => 'sci', 'Sed0003467' => 'sed', 'Sed0009355' => 'sed', 'Sed0009894' => 'sed', 'Sed0011972' => 'sed', 'Sed0021483' => 'sed', 'Sed0021750' => 'sed', 'Sed0026279' => 'sed', 'SEGI_05312' => 'sgi', 'SEGI_10112' => 'sgi', 'SEGI_15835' => 'sgi', 'SEGI_30386' => 'sgi', 'SEGI_34122' => 'sgi', 'SEGI_35063' => 'sgi', 'SGA_v2.0_scaffold101G29794' => 'sas', 'SGA_v2.0_scaffold1G00573' => 'sas', 'SGA_v2.0_scaffold79G25637' => 'sas', 'SGA_v2.0_scaffold88G27283' => 'sas', 'SGA_v2.0_scaffold88G27285' => 'sas', 'SGA_v2.0_scaffold88G27331' => 'sas', 'SHI09937' => 'shi', 'SMO119G0302' => 'smo', 'SMO137G0231' => 'smo', 'SMO367G1151' => 'smo', 'Solyc02g082000.3' => 'sly', 'Solyc06g031670.3' => 'sly', 'Solyc06g053810.3' => 'sly', 'Solyc07g025457.1' => 'sly', 'Solyc08g059740.1' => 'sly', 'Solyc08g059750.3' => 'sly', 'Solyc09g083370.3' => 'sly', 'Solyc12g038950.3' => 'sly', 'Sopen02g026630' => 'spe', 'Sopen06g018930' => 'spe', 'Sopen06g018940' => 'spe', 'Sopen08g009460' => 'spe', 'Sopen09g032290' => 'spe', 'Sp1g03080' => 'spa', 'Sp1g03090' => 'spa', 'Sp1g05480' => 'spa', 'Sp2g07860' => 'spa', 'Sp2g08430' => 'spa', 'Sp2g08440' => 'spa', 'Sp2g26200' => 'spa', 'Sp4g13170' => 'spa', 'Sp6g33840' => 'spa', 'SpUn1204_0010' => 'spa', 'TAR365G0908' => 'tar', 'TAR381G1270' => 'tar', 'TAR381G1651' => 'tar', 'TAR625G1131' => 'tar', 'TAR633G0962' => 'tar', 'TAR633G1729' => 'tar', 'TAR633G1864' => 'tar', 'TAR636G0221' => 'tar', 'TAR636G0314' => 'tar', 'TAR636G3202' => 'tar', 'THA.LOC104800805' => 'tha', 'THA.LOC104801096' => 'tha', 'THA.LOC104801555' => 'tha', 'THA.LOC104808491' => 'tha', 'THA.LOC104808595' => 'tha', 'THA.LOC104815985' => 'tha', 'THA.LOC104822250' => 'tha', 'THA.LOC104826071' => 'tha', 'Thecc.01G265200' => 'tca', 'Thecc.01G265300' => 'tca', 'Thecc.01G265700' => 'tca', 'Thecc.03G109100' => 'tca', 'Thecc.04G245900' => 'tca', 'Thecc.04G246000' => 'tca', 'Thhalv10003334m.g' => 'esa', 'Thhalv10005508m.g' => 'esa', 'Thhalv10005643m.g' => 'esa', 'Thhalv10007316m.g' => 'esa', 'Thhalv10009006m.g' => 'esa', 'Thhalv10009309m.g' => 'esa', 'Thhalv10014917m.g' => 'esa', 'Thhalv10014919m.g' => 'esa', 'Thhalv10015393m.g' => 'esa', 'Thhalv10016515m.g' => 'esa', 'Thhalv10029242m.g' => 'esa', 'TPR.G16654' => 'tpr', 'TPR.G20589' => 'tpr', 'TPR.G23029' => 'tpr', 'TPR.G27731' => 'tpr', 'TPR.G28889' => 'tpr', 'TPR.G28899' => 'tpr', 'TPR.G30846' => 'tpr', 'TPR.G5452' => 'tpr', 'TPR.G5713' => 'tpr', 'TPR.G9046' => 'tpr', 'TPR.G9061' => 'tpr', 'TWI09G1075' => 'twi', 'TWI12G0806' => 'twi', 'TWI18G0108' => 'twi', 'TWI53G1361' => 'twi', 'TWI73G0185' => 'twi', 'TWI73G0427' => 'twi', 'unitig_37.g12001' => 'ugi', 'unitig_747.g21660' => 'ugi', 'unitig_748.g7232' => 'ugi', 'unitig_748.g7315' => 'ugi', 'unitig_85.g27262' => 'ugi', 'unitig_92.g28220' => 'ugi', 'vmacro02632' => 'vma', 'vmacro08410' => 'vma', 'vmacro08411' => 'vma', 'vmacro15407' => 'vma', 'VMungo0251G3619' => 'vmu', 'VMungo0720G1204' => 'vmu', 'VMungo0720G1918' => 'vmu', 'VMungo0720G2387' => 'vmu', 'VMungo0720G2961' => 'vmu', 'VMungo1215G2154' => 'vmu', 'VMungo1383G2411' => 'vmu', 'Zm00001eb051130' => 'zma', 'Zm00001eb116830' => 'zma', 'Zm00001eb116850' => 'zma', 'Zm00001eb151740' => 'zma', 'Zm00001eb292360' => 'zma', 'Zm00001eb301640' => 'zma' ), 'gf_id' => 'HOM05D000856', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000856' ), 'data_identifier' => 'HOM05D000856', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000856', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p00010' => 'bna', 'A03p04160' => 'bna', 'A03p17160' => 'bna', 'A04p23370' => 'bna', 'A05p14860' => 'bna', 'A08p37020' => 'bna', 'A09p08050' => 'bna', 'A09p66800' => 'bna', 'A09p67940' => 'bna', 'A10p02680' => 'bna', 'A10p05320' => 'bna', 'Aa31LG1G20560' => 'aar', 'Aa31LG1G20610' => 'aar', 'Aa31LG1G7810' => 'aar', 'Aa31LG5G3590' => 'aar', 'Aa31LG5G6140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3819' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4683' => 'aag', 'Actinidia04480' => 'ach', 'Actinidia05466' => 'ach', 'Actinidia08445' => 'ach', 'Actinidia21170' => 'ach', 'Actinidia24812' => 'ach', 'Actinidia24951' => 'ach', 'Actinidia40088' => 'ach', 'Ah.02g111660' => 'amhyb', 'Ah.11g048900' => 'amhyb', 'Ah.11g049910' => 'amhyb', 'AL1G13870' => 'aly', 'AL1G13880' => 'aly', 'AL1G16760' => 'aly', 'AL390U10020' => 'aly', 'AL4G25520' => 'aly', 'AL6G19890' => 'aly', 'AL6G19900' => 'aly', 'AL6G19910' => 'aly', 'AL8G40100' => 'aly', 'Aqoxy2G03562' => 'aox', 'Aqoxy5G00316' => 'aox', 'Aqoxy5G00926' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1628KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1H403S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2FU6SJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.882I6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8YRY2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YN1SN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AF70II' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZA8L1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F916KL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHRD8H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KTZ8QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S22EMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8M29T' => 'arhy', 'AT1G04270' => 'ath', 'AT1G04280' => 'ath', 'AT1G06750' => 'ath', 'AT1G33850' => 'ath', 'AT2G30630' => 'ath', 'AT5G09490' => 'ath', 'AT5G09500' => 'ath', 'AT5G09510' => 'ath', 'AT5G43640' => 'ath', 'AT5G63070' => 'ath', 'ATR0605G315' => 'atr', 'Atru.chr11.175' => 'acertr', 'Atru.chr11.653' => 'acertr', 'Atru.chr3.1616' => 'acertr', 'Atru.chr4.2230' => 'acertr', 'Atru.chr4.2232' => 'acertr', 'Atru.chr5.1598' => 'acertr', 'Atru.chr5.1600' => 'acertr', 'Atru.chr5.2188' => 'acertr', 'AUR62008326' => 'cqu', 'AUR62011922' => 'cqu', 'AUR62011924' => 'cqu', 'AUR62021771' => 'cqu', 'AUR62032237' => 'cqu', 'AUR62032240' => 'cqu', 'BcaB01g05572' => 'bca', 'BcaB02g10337' => 'bca', 'BcaB04g19944' => 'bca', 'BcaB05g21548' => 'bca', 'BcaB05g21549' => 'bca', 'BcaB05g23227' => 'bca', 'BcaB06g26256' => 'bca', 'BcaB06g26257' => 'bca', 'BcaB06g28379' => 'bca', 'BcaC02g11159' => 'bca', 'BcaC03g13258' => 'bca', 'BcaC03g13259' => 'bca', 'BcaC05g24456' => 'bca', 'BcaC05g24457' => 'bca', 'BcaC07g36922' => 'bca', 'BcaC07g36923' => 'bca', 'BcaC07g42050' => 'bca', 'BcaC07g42176' => 'bca', 'BcaC07g42195' => 'bca', 'BcaC07g42196' => 'bca', 'BcaNung06674' => 'bca', 'BolC2t06351H' => 'bol', 'BolC2t06352H' => 'bol', 'BolC3t12993H' => 'bol', 'BolC4t23525H' => 'bol', 'BolC4t27475H' => 'bol', 'BolC5t29025H' => 'bol', 'BolC5t29026H' => 'bol', 'BolC8t46898H' => 'bol', 'BolC8t46899H' => 'bol', 'BolC8t52630H' => 'bol', 'BolC8t52765H' => 'bol', 'BolC9t53824H' => 'bol', 'BraA03t09760Z' => 'bra', 'BraA03t10990Z' => 'bra', 'BraA05t20413Z' => 'bra', 'BraA08t35602Z' => 'bra', 'BraA09t36458Z' => 'bra', 'BraA09t42018Z' => 'bra', 'BraA09t42129Z' => 'bra', 'BraA10t42536Z' => 'bra', 'BraA10t42537Z' => 'bra', 'C01p10690' => 'bna', 'C02p03890' => 'bna', 'C02p03900' => 'bna', 'C03p04620' => 'bna', 'C04p19870' => 'bna', 'C04p59670' => 'bna', 'C05p02460' => 'bna', 'C05p02470' => 'bna', 'C08p00980' => 'bna', 'C08p00990' => 'bna', 'C08p51030' => 'bna', 'C08p52360' => 'bna', 'C09p09120' => 'bna', 'CAN.G19.15' => 'can', 'CAN.G251.10' => 'can', 'CAN.G251.9' => 'can', 'CAN.G398.24' => 'can', 'CAN.G410.32' => 'can', 'CAN.G881.2' => 'can', 'CANSAT01G3025' => 'cansat', 'CANSAT78G1211' => 'cansat', 'CANSAT78G1218' => 'cansat', 'CANSAT78G1521' => 'cansat', 'CANSAT78G1670' => 'cansat', 'CARHR003600' => 'chi', 'CARHR003610' => 'chi', 'CARHR006290' => 'chi', 'CARHR006430' => 'chi', 'CARHR124110' => 'chi', 'CARHR203870' => 'chi', 'CARHR203880' => 'chi', 'CARHR203890' => 'chi', 'CARHR276880' => 'chi', 'Carub.0001s0346' => 'cru', 'Carub.0001s0347' => 'cru', 'Carub.0001s0607' => 'cru', 'Carub.0003s2768' => 'cru', 'Carub.0003s2769' => 'cru', 'Carub.0004s1178' => 'cru', 'Carub.0006s0806' => 'cru', 'Carub.0006s0807' => 'cru', 'Carub.0006s0808' => 'cru', 'Carub.0008s0501' => 'cru', 'Carub.0008s2379' => 'cru', 'Ca_08655_v3' => 'car', 'Ca_08922_v3' => 'car', 'Ca_08923_v3' => 'car', 'Ca_09119_v3' => 'car', 'Ca_09703_v3' => 'car', 'Ca_09705_v3' => 'car', 'Ca_09835_v3' => 'car', 'Ca_26403_v3' => 'car', 'Ca_30719_v3' => 'car', 'CBR_g17958' => 'cbr', 'CBR_g40516' => 'cbr', 'Cc00_g05350' => 'ccan', 'Cc01_g18690' => 'ccan', 'Cc03_g04830' => 'ccan', 'Cc03_g04850' => 'ccan', 'CDE02G4469' => 'cde', 'CDE06G0883' => 'cde', 'CDE06G1295' => 'cde', 'CDE06G1390' => 'cde', 'CDE07G0584' => 'cde', 'CDE07G1084' => 'cde', 'CDE08G1259' => 'cde', 'Cfa002341' => 'cfa', 'Cfa024337' => 'cfa', 'Ciclev10004749m.g' => 'ccl', 'Ciclev10006127m.g' => 'ccl', 'Ciclev10019720m.g' => 'ccl', 'Ciclev10022652m.g' => 'ccl', 'CiPaw.01G190400' => 'cil', 'CiPaw.01G190500' => 'cil', 'CiPaw.02G116400' => 'cil', 'CiPaw.02G116500' => 'cil', 'CiPaw.04G183000' => 'cil', 'CiPaw.04G183300' => 'cil', 'ClCG05G004610' => 'cla', 'ClCG05G004620' => 'cla', 'ClCG06G006730' => 'cla', 'ClCG06G006740' => 'cla', 'ClCG11G003690' => 'cla', 'COL.COLO4_08276' => 'col', 'COL.COLO4_08277' => 'col', 'COL.COLO4_15787' => 'col', 'COL.COLO4_15789' => 'col', 'Cpa.g.c44815' => 'cpa', 'Cpa.g.sc52.144' => 'cpa', 'Cpa.g.sc58.46' => 'cpa', 'Cpa.g.sc58.47' => 'cpa', 'Cre08.g360900' => 'cre', 'CsaV3_2G013030' => 'csa', 'CsaV3_2G013050' => 'csa', 'CsaV3_2G015620' => 'csa', 'CsaV3_3G012590' => 'csa', 'CsaV3_3G012600' => 'csa', 'CSS0001641' => 'camsi', 'CSS0008310' => 'camsi', 'CSS0013011' => 'camsi', 'CSS0017147' => 'camsi', 'CSS0022970' => 'camsi', 'CSS0025655' => 'camsi', 'CSS0028665' => 'camsi', 'CSS0029117' => 'camsi', 'CSS0032024' => 'camsi', 'CSS0039681' => 'camsi', 'CSS0046516' => 'camsi', 'CSS0050307' => 'camsi', 'DCAR_005871' => 'dca', 'DCAR_007342' => 'dca', 'DCAR_024228' => 'dca', 'DCAR_027277' => 'dca', 'DCAR_030718' => 'dca', 'Dinv20287' => 'din', 'Dinv22461' => 'din', 'Dinv22464' => 'din', 'Dinv29912' => 'din', 'Dinv29913' => 'din', 'Dinv34580' => 'din', 'Dinv34582' => 'din', 'Dinv44632' => 'din', 'Duzib052G0266' => 'dzi', 'Duzib133G0907' => 'dzi', 'Duzib133G1034' => 'dzi', 'Duzib138G0207' => 'dzi', 'Duzib138G0491' => 'dzi', 'Duzib151G0812' => 'dzi', 'Duzib151G1166' => 'dzi', 'Duzib168G0192' => 'dzi', 'Duzib211G0077' => 'dzi', 'Duzib212G0429' => 'dzi', 'Duzib212G0472' => 'dzi', 'ECA233G2617' => 'eca', 'ECA236G4188' => 'eca', 'ECA240G0936' => 'eca', 'ECA240G1129' => 'eca', 'ECA247G0623' => 'eca', 'EL10Ac5g10451' => 'bvu', 'EL10Ac5g10453' => 'bvu', 'EL10Ac5g10894' => 'bvu', 'Eucgr.H00192' => 'egr', 'Eucgr.H00193' => 'egr', 'Eucgr.H00194' => 'egr', 'Eucgr.J01562' => 'egr', 'Eucgr.K03301' => 'egr', 'FAN02G0632' => 'fan', 'FAN05G5378' => 'fan', 'FAN09G3247' => 'fan', 'FAN12G0435' => 'fan', 'FAN12G2426' => 'fan', 'FAN14G1707' => 'fan', 'FAN14G4725' => 'fan', 'FAN15G2071' => 'fan', 'FAN17G3065' => 'fan', 'FAN19G1376' => 'fan', 'FAN20G0354' => 'fan', 'FAN20G2429' => 'fan', 'FAN20G2658' => 'fan', 'FAN24G2343' => 'fan', 'FAN27G2362' => 'fan', 'FAN28G1765' => 'fan', 'FvH4_1g16020' => 'fve', 'FvH4_2g04890' => 'fve', 'FvH4_2g22270' => 'fve', 'FvH4_4g02630' => 'fve', 'FvH4_4g02640' => 'fve', 'FvH4_6g02650' => 'fve', 'Glyma.02G140600' => 'gma', 'Glyma.03G159900' => 'gma', 'Glyma.05G234800' => 'gma', 'Glyma.07G269600' => 'gma', 'Glyma.08G042300' => 'gma', 'Glyma.10G033500' => 'gma', 'Glyma.10G185200' => 'gma', 'Glyma.17G004300' => 'gma', 'Glyma.19G161900' => 'gma', 'Glyma.20G205100' => 'gma', 'Glyma.20G205200' => 'gma', 'Gohir.A01G139101' => 'ghi', 'Gohir.A02G035600' => 'ghi', 'Gohir.A02G117901' => 'ghi', 'Gohir.A07G210100' => 'ghi', 'Gohir.A07G210200' => 'ghi', 'Gohir.A08G061100' => 'ghi', 'Gohir.A09G223000' => 'ghi', 'Gohir.A09G223100' => 'ghi', 'Gohir.A10G113900' => 'ghi', 'Gohir.A10G114000' => 'ghi', 'Gohir.D02G042300' => 'ghi', 'Gohir.D07G216100' => 'ghi', 'Gohir.D07G216200' => 'ghi', 'Gohir.D08G070400' => 'ghi', 'Gohir.D09G225000' => 'ghi', 'Gohir.D09G225100' => 'ghi', 'Gohir.D10G152300' => 'ghi', 'Gohir.D10G153200' => 'ghi', 'Gohir.D11G133701' => 'ghi', 'Gorai.004G074100' => 'gra', 'Gorai.005G046800' => 'gra', 'Gorai.006G246500' => 'gra', 'Gorai.006G246600' => 'gra', 'Gorai.007G142900' => 'gra', 'Gorai.011G171000' => 'gra', 'Gorai.011G171100' => 'gra', 'Gorai.013G104300' => 'gra', 'Gorai.013G104400' => 'gra', 'GSVIVG01000754001' => 'vvi', 'GSVIVG01000756001' => 'vvi', 'GSVIVG01010903001' => 'vvi', 'GSVIVG01017623001' => 'vvi', 'GSVIVG01018113001' => 'vvi', 'GSVIVG01018116001' => 'vvi', 'GSVIVG01018118001' => 'vvi', 'HanXRQChr03g0076211' => 'han', 'HanXRQChr03g0092431' => 'han', 'HanXRQChr03g0092441' => 'han', 'HanXRQChr03g0092591' => 'han', 'HanXRQChr03g0092671' => 'han', 'HanXRQChr03g0092681' => 'han', 'HanXRQChr03g0092691' => 'han', 'HanXRQChr03g0092701' => 'han', 'HanXRQChr03g0092721' => 'han', 'HanXRQChr03g0092731' => 'han', 'HanXRQChr04g0113681' => 'han', 'HanXRQChr10g0281371' => 'han', 'HanXRQChr11g0337141' => 'han', 'HanXRQChr13g0424521' => 'han', 'HanXRQChr13g0424531' => 'han', 'HanXRQChr13g0424541' => 'han', 'HanXRQChr16g0498221' => 'han', 'Haze_04377' => 'cav', 'Haze_11298' => 'cav', 'Haze_24547' => 'cav', 'Haze_24550' => 'cav', 'Haze_26587' => 'cav', 'Hma1.2p1_0650F.1_g195410' => 'hma', 'Hma1.2p1_0893F.1_g233470' => 'hma', 'HPP92_006508' => 'vpl', 'HPP92_024780' => 'vpl', 'Hund02688' => 'sun', 'Hund09380' => 'sun', 'Hund09381' => 'sun', 'Hund09832' => 'sun', 'Hund09833' => 'sun', 'Hund11351' => 'sun', 'Hund11513' => 'sun', 'Lalb_Chr06g0162591' => 'lal', 'Lalb_Chr06g0162601' => 'lal', 'Lalb_Chr06g0169321' => 'lal', 'Lalb_Chr09g0330951' => 'lal', 'Lalb_Chr16g0387631' => 'lal', 'Lalb_Chr21g0306241' => 'lal', 'Lalb_Chr25g0290051' => 'lal', 'Lalb_Chr25g0290061' => 'lal', 'Lalb_Chr25g0290071' => 'lal', 'Lj1g0003876' => 'lja', 'Lj1P1207T36' => 'lonja', 'Lj2C1156G12' => 'lonja', 'Lj3A793G39' => 'lonja', 'Lj3C580G2' => 'lonja', 'Lj3C780G2' => 'lonja', 'Lj3C780T4' => 'lonja', 'Lj3C793G9' => 'lonja', 'Lj4g0012960' => 'lja', 'Lj5g0021252' => 'lja', 'Lj5g0021484' => 'lja', 'Lj5g0024528' => 'lja', 'Lj6A399T12' => 'lonja', 'Lj6A656G65' => 'lonja', 'Lsat_1_v5_gn_3_125500' => 'lsa', 'Lsat_1_v5_gn_3_125540' => 'lsa', 'Lsat_1_v5_gn_5_72701' => 'lsa', 'Lsat_1_v5_gn_8_91560' => 'lsa', 'Lsat_1_v5_gn_9_9640' => 'lsa', 'Manes.01G200600' => 'mes', 'Manes.01G200700' => 'mes', 'Manes.03G168900' => 'mes', 'Manes.03G169000' => 'mes', 'Manes.05G085801' => 'mes', 'Manes.05G086200' => 'mes', 'Manes.15G036700' => 'mes', 'Manes.15G036900' => 'mes', 'Mapoly0004s0172' => 'mpo', 'Mapoly0023s0001' => 'mpo', 'Mapoly0142s0012' => 'mpo', 'MBI01_g32854_MAGBIO' => 'mbi', 'MBI11_g24427_MAGBIO' => 'mbi', 'MBI11_g47319_MAGBIO' => 'mbi', 'MCO01G433' => 'mco', 'MD00G1187800' => 'mdo', 'MD04G1226500' => 'mdo', 'MD05G1203900' => 'mdo', 'MD10G1191100' => 'mdo', 'MD12G1243500' => 'mdo', 'MD13G1207000' => 'mdo', 'MD13G1207100' => 'mdo', 'MD16G1208600' => 'mdo', 'Medtr1g050352' => 'mtr', 'Medtr1g070385' => 'mtr', 'Medtr1g070450' => 'mtr', 'Medtr1g075200' => 'mtr', 'Medtr1g075250' => 'mtr', 'Medtr1g075260' => 'mtr', 'Medtr1g475250' => 'mtr', 'Medtr4g075450' => 'mtr', 'Medtr7g096300' => 'mtr', 'Medtr8g105110' => 'mtr', 'MELO3C006470.2' => 'cme', 'MELO3C006471.2' => 'cme', 'MELO3C020772.2' => 'cme', 'MELO3C026780.2' => 'cme', 'MELO3C026781.2' => 'cme', 'Migut.D00390' => 'egut', 'Migut.G00435' => 'egut', 'Migut.G00436' => 'egut', 'Migut.G00718' => 'egut', 'MSTRG.21891' => 'ama', 'MSTRG.26910' => 'ama', 'MSTRG.4099' => 'ama', 'MSTRG.9925' => 'ama', 'Nitab4.5_0000165g0010' => 'nta', 'Nitab4.5_0000209g0180' => 'nta', 'Nitab4.5_0000244g0440' => 'nta', 'Nitab4.5_0000525g0220' => 'nta', 'Nitab4.5_0001597g0020' => 'nta', 'Nitab4.5_0001878g0040' => 'nta', 'Nitab4.5_0001878g0060' => 'nta', 'Nitab4.5_0002838g0100' => 'nta', 'Nitab4.5_0002838g0120' => 'nta', 'Nitab4.5_0004798g0030' => 'nta', 'Nitab4.5_0005420g0010' => 'nta', 'Nitab4.5_0005507g0010' => 'nta', 'Nitab4.5_0005574g0020' => 'nta', 'Nitab4.5_0005838g0010' => 'nta', 'Nitab4.5_0010580g0020' => 'nta', 'Nn1g02599' => 'nnu', 'Nn1g02608' => 'nnu', 'Nn3g17742' => 'nnu', 'Nn3g19534' => 'nnu', 'Nn3g19535' => 'nnu', 'Oeu008790.1' => 'oeu', 'Oeu008792.1' => 'oeu', 'Oeu032590.1' => 'oeu', 'Oeu035349.1' => 'oeu', 'Oeu049791.1' => 'oeu', 'Os01g0774500' => 'osa', 'Os03g0628800' => 'osa', 'Os03g0798600' => 'osa', 'Os05g0508800' => 'osa', 'Peaxi162Scf00036g02018' => 'pax', 'Peaxi162Scf00578g00032' => 'pax', 'Peaxi162Scf00578g00317' => 'pax', 'Peaxi162Scf00785g00114' => 'pax', 'Peaxi162Scf00813g00119' => 'pax', 'Peaxi162Scf00906g00227' => 'pax', 'PGR004G0875' => 'pgr', 'PGR004G2424' => 'pgr', 'PGR031G1239' => 'pgr', 'PGR031G2474' => 'pgr', 'PGR044G0423' => 'pgr', 'PGSC0003DMG400001128' => 'stu', 'PGSC0003DMG400007336' => 'stu', 'PGSC0003DMG400016318' => 'stu', 'PGSC0003DMG400016319' => 'stu', 'PGSC0003DMG400018074' => 'stu', 'Phvul.001G157700' => 'pvu', 'Phvul.002G148550' => 'pvu', 'Phvul.002G320200' => 'pvu', 'Phvul.003G089200' => 'pvu', 'Phvul.007G126000' => 'pvu', 'Phvul.007G126100' => 'pvu', 'Phvul.007G178000' => 'pvu', 'Phvul.007G178200' => 'pvu', 'Potri.002G043000' => 'ptr', 'Potri.002G043200' => 'ptr', 'Potri.003G123750' => 'ptr', 'Potri.005G055401' => 'ptr', 'Potri.005G219700' => 'ptr', 'Potri.005G220000' => 'ptr', 'Potri.008G161901' => 'ptr', 'Potri.008G162000' => 'ptr', 'Potri.008G162400' => 'ptr', 'Potri.010G076900' => 'ptr', 'Pp3c12_9180' => 'ppa', 'Pp3c13_19770' => 'ppa', 'Pp3c14_22950' => 'ppa', 'Pp3c16_12160' => 'ppa', 'Pp3c27_7820' => 'ppa', 'Pp3c2_3490' => 'ppa', 'Pp3c3_23700' => 'ppa', 'Pp3c3_36520' => 'ppa', 'Pp3c4_15250' => 'ppa', 'PRCOL_00007002' => 'pco', 'Prupe.1G030600' => 'ppe', 'Prupe.1G030700' => 'ppe', 'Prupe.6G345200' => 'ppe', 'Prupe.8G230300' => 'ppe', 'Prupe.8G230500' => 'ppe', 'Psat3g059600' => 'psa', 'Psat5g200920' => 'psa', 'Psat6g056440' => 'psa', 'Psat6g057360' => 'psa', 'Psat6g134120' => 'psa', 'Psat6g134160' => 'psa', 'Psat7g008640' => 'psa', 'Psat7g185240' => 'psa', 'PSO017G1330' => 'pso', 'PSO063G6097' => 'pso', 'PSO170G0835' => 'pso', 'PSO170G2499' => 'pso', 'PSO210G5058' => 'pso', 'PSO210G6154' => 'pso', 'PSO585G0031' => 'pso', 'PSO832G0264' => 'pso', 'PSO832G4288' => 'pso', 'QL03p027355' => 'qlo', 'QL03p027430' => 'qlo', 'QL04p081380' => 'qlo', 'QL06p015642' => 'qlo', 'QL06p015650' => 'qlo', 'QL06p015686' => 'qlo', 'QL12p042927' => 'qlo', 'QL93p1863_0035' => 'qlo', 'RcHm_v2.0_Chr3g0450581' => 'rch', 'RcHm_v2.0_Chr4g0390371' => 'rch', 'RcHm_v2.0_Chr4g0390381' => 'rch', 'RcHm_v2.0_Chr4g0390491' => 'rch', 'RcHm_v2.0_Chr4g0390501' => 'rch', 'RcHm_v2.0_Chr6g0289231' => 'rch', 'Rhsim04G0190400' => 'rsi', 'Rhsim04G0190500' => 'rsi', 'Rhsim04G0190600' => 'rsi', 'Rhsim13G0031400' => 'rsi', 'Rhsim13G0165600' => 'rsi', 'RhsimUnG0114600' => 'rsi', 'RhsimUnG0114700' => 'rsi', 'Sabra02G0034800' => 'sbr', 'Sabra02G0035100' => 'sbr', 'Sabra05G0168600' => 'sbr', 'Sabra05G0168800' => 'sbr', 'Sabra08G0123700' => 'sbr', 'Sabra10G0031900' => 'sbr', 'Sabra13G0039000' => 'sbr', 'SalBow2G0782' => 'sbo', 'SalBow2G1403' => 'sbo', 'SalBow4G0074' => 'sbo', 'SalBow4G2635' => 'sbo', 'SalBow5G3010' => 'sbo', 'Sc05g0000870' => 'sci', 'Sc05g0000890' => 'sci', 'Sc13g0005000' => 'sci', 'Sc13g0005030' => 'sci', 'Sc19g0003790' => 'sci', 'Sc19g0003800' => 'sci', 'Sed0003467' => 'sed', 'Sed0009355' => 'sed', 'Sed0009894' => 'sed', 'Sed0011972' => 'sed', 'Sed0021483' => 'sed', 'Sed0021750' => 'sed', 'Sed0026279' => 'sed', 'SEGI_05312' => 'sgi', 'SEGI_10112' => 'sgi', 'SEGI_15835' => 'sgi', 'SEGI_30386' => 'sgi', 'SEGI_34122' => 'sgi', 'SEGI_35063' => 'sgi', 'SGA_v2.0_scaffold101G29794' => 'sas', 'SGA_v2.0_scaffold1G00573' => 'sas', 'SGA_v2.0_scaffold79G25637' => 'sas', 'SGA_v2.0_scaffold88G27283' => 'sas', 'SGA_v2.0_scaffold88G27285' => 'sas', 'SGA_v2.0_scaffold88G27331' => 'sas', 'SHI09937' => 'shi', 'SMO119G0302' => 'smo', 'SMO137G0231' => 'smo', 'SMO367G1151' => 'smo', 'Solyc02g082000.3' => 'sly', 'Solyc06g031670.3' => 'sly', 'Solyc06g053810.3' => 'sly', 'Solyc07g025457.1' => 'sly', 'Solyc08g059740.1' => 'sly', 'Solyc08g059750.3' => 'sly', 'Solyc09g083370.3' => 'sly', 'Solyc12g038950.3' => 'sly', 'Sopen02g026630' => 'spe', 'Sopen06g018930' => 'spe', 'Sopen06g018940' => 'spe', 'Sopen08g009460' => 'spe', 'Sopen09g032290' => 'spe', 'Sp1g03080' => 'spa', 'Sp1g03090' => 'spa', 'Sp1g05480' => 'spa', 'Sp2g07860' => 'spa', 'Sp2g08430' => 'spa', 'Sp2g08440' => 'spa', 'Sp2g26200' => 'spa', 'Sp4g13170' => 'spa', 'Sp6g33840' => 'spa', 'SpUn1204_0010' => 'spa', 'TAR365G0908' => 'tar', 'TAR381G1270' => 'tar', 'TAR381G1651' => 'tar', 'TAR625G1131' => 'tar', 'TAR633G0962' => 'tar', 'TAR633G1729' => 'tar', 'TAR633G1864' => 'tar', 'TAR636G0221' => 'tar', 'TAR636G0314' => 'tar', 'TAR636G3202' => 'tar', 'THA.LOC104800805' => 'tha', 'THA.LOC104801096' => 'tha', 'THA.LOC104801555' => 'tha', 'THA.LOC104808491' => 'tha', 'THA.LOC104808595' => 'tha', 'THA.LOC104815985' => 'tha', 'THA.LOC104822250' => 'tha', 'THA.LOC104826071' => 'tha', 'Thecc.01G265200' => 'tca', 'Thecc.01G265300' => 'tca', 'Thecc.01G265700' => 'tca', 'Thecc.03G109100' => 'tca', 'Thecc.04G245900' => 'tca', 'Thecc.04G246000' => 'tca', 'Thhalv10003334m.g' => 'esa', 'Thhalv10005508m.g' => 'esa', 'Thhalv10005643m.g' => 'esa', 'Thhalv10007316m.g' => 'esa', 'Thhalv10009006m.g' => 'esa', 'Thhalv10009309m.g' => 'esa', 'Thhalv10014917m.g' => 'esa', 'Thhalv10014919m.g' => 'esa', 'Thhalv10015393m.g' => 'esa', 'Thhalv10016515m.g' => 'esa', 'Thhalv10029242m.g' => 'esa', 'TPR.G16654' => 'tpr', 'TPR.G20589' => 'tpr', 'TPR.G23029' => 'tpr', 'TPR.G27731' => 'tpr', 'TPR.G28889' => 'tpr', 'TPR.G28899' => 'tpr', 'TPR.G30846' => 'tpr', 'TPR.G5452' => 'tpr', 'TPR.G5713' => 'tpr', 'TPR.G9046' => 'tpr', 'TPR.G9061' => 'tpr', 'TWI09G1075' => 'twi', 'TWI12G0806' => 'twi', 'TWI18G0108' => 'twi', 'TWI53G1361' => 'twi', 'TWI73G0185' => 'twi', 'TWI73G0427' => 'twi', 'unitig_37.g12001' => 'ugi', 'unitig_747.g21660' => 'ugi', 'unitig_748.g7232' => 'ugi', 'unitig_748.g7315' => 'ugi', 'unitig_85.g27262' => 'ugi', 'unitig_92.g28220' => 'ugi', 'vmacro02632' => 'vma', 'vmacro08410' => 'vma', 'vmacro08411' => 'vma', 'vmacro15407' => 'vma', 'VMungo0251G3619' => 'vmu', 'VMungo0720G1204' => 'vmu', 'VMungo0720G1918' => 'vmu', 'VMungo0720G2387' => 'vmu', 'VMungo0720G2961' => 'vmu', 'VMungo1215G2154' => 'vmu', 'VMungo1383G2411' => 'vmu', 'Zm00001eb051130' => 'zma', 'Zm00001eb116830' => 'zma', 'Zm00001eb116850' => 'zma', 'Zm00001eb151740' => 'zma', 'Zm00001eb292360' => 'zma', 'Zm00001eb301640' => 'zma' ) $gf_id = 'HOM05D000856' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000856' ) $data_identifier = 'HOM05D000856' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 13, 'ath' => (int) 10, 'atr' => (int) 1, 'acertr' => (int) 8, 'cqu' => (int) 6, 'bca' => (int) 21, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 11, 'car' => (int) 9, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 8, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 5, 'fan' => (int) 16, 'fve' => (int) 6, 'gma' => (int) 11, 'ghi' => (int) 19, 'gra' => (int) 9, 'vvi' => (int) 7, 'han' => (int) 17, 'cav' => (int) 5, 'hma' => (int) 2, 'vpl' => (int) 2, 'sun' => (int) 7, 'lal' => (int) 9, 'lja' => (int) 5, 'lonja' => (int) 9, 'lsa' => (int) 5, 'mes' => (int) 8, 'mpo' => (int) 3, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 10, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 15, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 9, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 9, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 6, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 5, 'spa' => (int) 10, 'tar' => (int) 10, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 11, 'tpr' => (int) 11, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 4, 'vmu' => (int) 7, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb301640' $species_info = array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ) $local_species = 'pso' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000856', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p00010' => 'bna', 'A03p04160' => 'bna', 'A03p17160' => 'bna', 'A04p23370' => 'bna', 'A05p14860' => 'bna', 'A08p37020' => 'bna', 'A09p08050' => 'bna', 'A09p66800' => 'bna', 'A09p67940' => 'bna', 'A10p02680' => 'bna', 'A10p05320' => 'bna', 'Aa31LG1G20560' => 'aar', 'Aa31LG1G20610' => 'aar', 'Aa31LG1G7810' => 'aar', 'Aa31LG5G3590' => 'aar', 'Aa31LG5G6140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3819' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4683' => 'aag', 'Actinidia04480' => 'ach', 'Actinidia05466' => 'ach', 'Actinidia08445' => 'ach', 'Actinidia21170' => 'ach', 'Actinidia24812' => 'ach', 'Actinidia24951' => 'ach', 'Actinidia40088' => 'ach', 'Ah.02g111660' => 'amhyb', 'Ah.11g048900' => 'amhyb', 'Ah.11g049910' => 'amhyb', 'AL1G13870' => 'aly', 'AL1G13880' => 'aly', 'AL1G16760' => 'aly', 'AL390U10020' => 'aly', 'AL4G25520' => 'aly', 'AL6G19890' => 'aly', 'AL6G19900' => 'aly', 'AL6G19910' => 'aly', 'AL8G40100' => 'aly', 'Aqoxy2G03562' => 'aox', 'Aqoxy5G00316' => 'aox', 'Aqoxy5G00926' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1628KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1H403S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2FU6SJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.882I6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8YRY2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YN1SN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AF70II' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZA8L1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F916KL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHRD8H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KTZ8QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S22EMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8M29T' => 'arhy', 'AT1G04270' => 'ath', 'AT1G04280' => 'ath', 'AT1G06750' => 'ath', 'AT1G33850' => 'ath', 'AT2G30630' => 'ath', 'AT5G09490' => 'ath', 'AT5G09500' => 'ath', 'AT5G09510' => 'ath', 'AT5G43640' => 'ath', 'AT5G63070' => 'ath', 'ATR0605G315' => 'atr', 'Atru.chr11.175' => 'acertr', 'Atru.chr11.653' => 'acertr', 'Atru.chr3.1616' => 'acertr', 'Atru.chr4.2230' => 'acertr', 'Atru.chr4.2232' => 'acertr', 'Atru.chr5.1598' => 'acertr', 'Atru.chr5.1600' => 'acertr', 'Atru.chr5.2188' => 'acertr', 'AUR62008326' => 'cqu', 'AUR62011922' => 'cqu', 'AUR62011924' => 'cqu', 'AUR62021771' => 'cqu', 'AUR62032237' => 'cqu', 'AUR62032240' => 'cqu', 'BcaB01g05572' => 'bca', 'BcaB02g10337' => 'bca', 'BcaB04g19944' => 'bca', 'BcaB05g21548' => 'bca', 'BcaB05g21549' => 'bca', 'BcaB05g23227' => 'bca', 'BcaB06g26256' => 'bca', 'BcaB06g26257' => 'bca', 'BcaB06g28379' => 'bca', 'BcaC02g11159' => 'bca', 'BcaC03g13258' => 'bca', 'BcaC03g13259' => 'bca', 'BcaC05g24456' => 'bca', 'BcaC05g24457' => 'bca', 'BcaC07g36922' => 'bca', 'BcaC07g36923' => 'bca', 'BcaC07g42050' => 'bca', 'BcaC07g42176' => 'bca', 'BcaC07g42195' => 'bca', 'BcaC07g42196' => 'bca', 'BcaNung06674' => 'bca', 'BolC2t06351H' => 'bol', 'BolC2t06352H' => 'bol', 'BolC3t12993H' => 'bol', 'BolC4t23525H' => 'bol', 'BolC4t27475H' => 'bol', 'BolC5t29025H' => 'bol', 'BolC5t29026H' => 'bol', 'BolC8t46898H' => 'bol', 'BolC8t46899H' => 'bol', 'BolC8t52630H' => 'bol', 'BolC8t52765H' => 'bol', 'BolC9t53824H' => 'bol', 'BraA03t09760Z' => 'bra', 'BraA03t10990Z' => 'bra', 'BraA05t20413Z' => 'bra', 'BraA08t35602Z' => 'bra', 'BraA09t36458Z' => 'bra', 'BraA09t42018Z' => 'bra', 'BraA09t42129Z' => 'bra', 'BraA10t42536Z' => 'bra', 'BraA10t42537Z' => 'bra', 'C01p10690' => 'bna', 'C02p03890' => 'bna', 'C02p03900' => 'bna', 'C03p04620' => 'bna', 'C04p19870' => 'bna', 'C04p59670' => 'bna', 'C05p02460' => 'bna', 'C05p02470' => 'bna', 'C08p00980' => 'bna', 'C08p00990' => 'bna', 'C08p51030' => 'bna', 'C08p52360' => 'bna', 'C09p09120' => 'bna', 'CAN.G19.15' => 'can', 'CAN.G251.10' => 'can', 'CAN.G251.9' => 'can', 'CAN.G398.24' => 'can', 'CAN.G410.32' => 'can', 'CAN.G881.2' => 'can', 'CANSAT01G3025' => 'cansat', 'CANSAT78G1211' => 'cansat', 'CANSAT78G1218' => 'cansat', 'CANSAT78G1521' => 'cansat', 'CANSAT78G1670' => 'cansat', 'CARHR003600' => 'chi', 'CARHR003610' => 'chi', 'CARHR006290' => 'chi', 'CARHR006430' => 'chi', 'CARHR124110' => 'chi', 'CARHR203870' => 'chi', 'CARHR203880' => 'chi', 'CARHR203890' => 'chi', 'CARHR276880' => 'chi', 'Carub.0001s0346' => 'cru', 'Carub.0001s0347' => 'cru', 'Carub.0001s0607' => 'cru', 'Carub.0003s2768' => 'cru', 'Carub.0003s2769' => 'cru', 'Carub.0004s1178' => 'cru', 'Carub.0006s0806' => 'cru', 'Carub.0006s0807' => 'cru', 'Carub.0006s0808' => 'cru', 'Carub.0008s0501' => 'cru', 'Carub.0008s2379' => 'cru', 'Ca_08655_v3' => 'car', 'Ca_08922_v3' => 'car', 'Ca_08923_v3' => 'car', 'Ca_09119_v3' => 'car', 'Ca_09703_v3' => 'car', 'Ca_09705_v3' => 'car', 'Ca_09835_v3' => 'car', 'Ca_26403_v3' => 'car', 'Ca_30719_v3' => 'car', 'CBR_g17958' => 'cbr', 'CBR_g40516' => 'cbr', 'Cc00_g05350' => 'ccan', 'Cc01_g18690' => 'ccan', 'Cc03_g04830' => 'ccan', 'Cc03_g04850' => 'ccan', 'CDE02G4469' => 'cde', 'CDE06G0883' => 'cde', 'CDE06G1295' => 'cde', 'CDE06G1390' => 'cde', 'CDE07G0584' => 'cde', 'CDE07G1084' => 'cde', 'CDE08G1259' => 'cde', 'Cfa002341' => 'cfa', 'Cfa024337' => 'cfa', 'Ciclev10004749m.g' => 'ccl', 'Ciclev10006127m.g' => 'ccl', 'Ciclev10019720m.g' => 'ccl', 'Ciclev10022652m.g' => 'ccl', 'CiPaw.01G190400' => 'cil', 'CiPaw.01G190500' => 'cil', 'CiPaw.02G116400' => 'cil', 'CiPaw.02G116500' => 'cil', 'CiPaw.04G183000' => 'cil', 'CiPaw.04G183300' => 'cil', 'ClCG05G004610' => 'cla', 'ClCG05G004620' => 'cla', 'ClCG06G006730' => 'cla', 'ClCG06G006740' => 'cla', 'ClCG11G003690' => 'cla', 'COL.COLO4_08276' => 'col', 'COL.COLO4_08277' => 'col', 'COL.COLO4_15787' => 'col', 'COL.COLO4_15789' => 'col', 'Cpa.g.c44815' => 'cpa', 'Cpa.g.sc52.144' => 'cpa', 'Cpa.g.sc58.46' => 'cpa', 'Cpa.g.sc58.47' => 'cpa', 'Cre08.g360900' => 'cre', 'CsaV3_2G013030' => 'csa', 'CsaV3_2G013050' => 'csa', 'CsaV3_2G015620' => 'csa', 'CsaV3_3G012590' => 'csa', 'CsaV3_3G012600' => 'csa', 'CSS0001641' => 'camsi', 'CSS0008310' => 'camsi', 'CSS0013011' => 'camsi', 'CSS0017147' => 'camsi', 'CSS0022970' => 'camsi', 'CSS0025655' => 'camsi', 'CSS0028665' => 'camsi', 'CSS0029117' => 'camsi', 'CSS0032024' => 'camsi', 'CSS0039681' => 'camsi', 'CSS0046516' => 'camsi', 'CSS0050307' => 'camsi', 'DCAR_005871' => 'dca', 'DCAR_007342' => 'dca', 'DCAR_024228' => 'dca', 'DCAR_027277' => 'dca', 'DCAR_030718' => 'dca', 'Dinv20287' => 'din', 'Dinv22461' => 'din', 'Dinv22464' => 'din', 'Dinv29912' => 'din', 'Dinv29913' => 'din', 'Dinv34580' => 'din', 'Dinv34582' => 'din', 'Dinv44632' => 'din', 'Duzib052G0266' => 'dzi', 'Duzib133G0907' => 'dzi', 'Duzib133G1034' => 'dzi', 'Duzib138G0207' => 'dzi', 'Duzib138G0491' => 'dzi', 'Duzib151G0812' => 'dzi', 'Duzib151G1166' => 'dzi', 'Duzib168G0192' => 'dzi', 'Duzib211G0077' => 'dzi', 'Duzib212G0429' => 'dzi', 'Duzib212G0472' => 'dzi', 'ECA233G2617' => 'eca', 'ECA236G4188' => 'eca', 'ECA240G0936' => 'eca', 'ECA240G1129' => 'eca', 'ECA247G0623' => 'eca', 'EL10Ac5g10451' => 'bvu', 'EL10Ac5g10453' => 'bvu', 'EL10Ac5g10894' => 'bvu', 'Eucgr.H00192' => 'egr', 'Eucgr.H00193' => 'egr', 'Eucgr.H00194' => 'egr', 'Eucgr.J01562' => 'egr', 'Eucgr.K03301' => 'egr', 'FAN02G0632' => 'fan', 'FAN05G5378' => 'fan', 'FAN09G3247' => 'fan', 'FAN12G0435' => 'fan', 'FAN12G2426' => 'fan', 'FAN14G1707' => 'fan', 'FAN14G4725' => 'fan', 'FAN15G2071' => 'fan', 'FAN17G3065' => 'fan', 'FAN19G1376' => 'fan', 'FAN20G0354' => 'fan', 'FAN20G2429' => 'fan', 'FAN20G2658' => 'fan', 'FAN24G2343' => 'fan', 'FAN27G2362' => 'fan', 'FAN28G1765' => 'fan', 'FvH4_1g16020' => 'fve', 'FvH4_2g04890' => 'fve', 'FvH4_2g22270' => 'fve', 'FvH4_4g02630' => 'fve', 'FvH4_4g02640' => 'fve', 'FvH4_6g02650' => 'fve', 'Glyma.02G140600' => 'gma', 'Glyma.03G159900' => 'gma', 'Glyma.05G234800' => 'gma', 'Glyma.07G269600' => 'gma', 'Glyma.08G042300' => 'gma', 'Glyma.10G033500' => 'gma', 'Glyma.10G185200' => 'gma', 'Glyma.17G004300' => 'gma', 'Glyma.19G161900' => 'gma', 'Glyma.20G205100' => 'gma', 'Glyma.20G205200' => 'gma', 'Gohir.A01G139101' => 'ghi', 'Gohir.A02G035600' => 'ghi', 'Gohir.A02G117901' => 'ghi', 'Gohir.A07G210100' => 'ghi', 'Gohir.A07G210200' => 'ghi', 'Gohir.A08G061100' => 'ghi', 'Gohir.A09G223000' => 'ghi', 'Gohir.A09G223100' => 'ghi', 'Gohir.A10G113900' => 'ghi', 'Gohir.A10G114000' => 'ghi', 'Gohir.D02G042300' => 'ghi', 'Gohir.D07G216100' => 'ghi', 'Gohir.D07G216200' => 'ghi', 'Gohir.D08G070400' => 'ghi', 'Gohir.D09G225000' => 'ghi', 'Gohir.D09G225100' => 'ghi', 'Gohir.D10G152300' => 'ghi', 'Gohir.D10G153200' => 'ghi', 'Gohir.D11G133701' => 'ghi', 'Gorai.004G074100' => 'gra', 'Gorai.005G046800' => 'gra', 'Gorai.006G246500' => 'gra', 'Gorai.006G246600' => 'gra', 'Gorai.007G142900' => 'gra', 'Gorai.011G171000' => 'gra', 'Gorai.011G171100' => 'gra', 'Gorai.013G104300' => 'gra', 'Gorai.013G104400' => 'gra', 'GSVIVG01000754001' => 'vvi', 'GSVIVG01000756001' => 'vvi', 'GSVIVG01010903001' => 'vvi', 'GSVIVG01017623001' => 'vvi', 'GSVIVG01018113001' => 'vvi', 'GSVIVG01018116001' => 'vvi', 'GSVIVG01018118001' => 'vvi', 'HanXRQChr03g0076211' => 'han', 'HanXRQChr03g0092431' => 'han', 'HanXRQChr03g0092441' => 'han', 'HanXRQChr03g0092591' => 'han', 'HanXRQChr03g0092671' => 'han', 'HanXRQChr03g0092681' => 'han', 'HanXRQChr03g0092691' => 'han', 'HanXRQChr03g0092701' => 'han', 'HanXRQChr03g0092721' => 'han', 'HanXRQChr03g0092731' => 'han', 'HanXRQChr04g0113681' => 'han', 'HanXRQChr10g0281371' => 'han', 'HanXRQChr11g0337141' => 'han', 'HanXRQChr13g0424521' => 'han', 'HanXRQChr13g0424531' => 'han', 'HanXRQChr13g0424541' => 'han', 'HanXRQChr16g0498221' => 'han', 'Haze_04377' => 'cav', 'Haze_11298' => 'cav', 'Haze_24547' => 'cav', 'Haze_24550' => 'cav', 'Haze_26587' => 'cav', 'Hma1.2p1_0650F.1_g195410' => 'hma', 'Hma1.2p1_0893F.1_g233470' => 'hma', 'HPP92_006508' => 'vpl', 'HPP92_024780' => 'vpl', 'Hund02688' => 'sun', 'Hund09380' => 'sun', 'Hund09381' => 'sun', 'Hund09832' => 'sun', 'Hund09833' => 'sun', 'Hund11351' => 'sun', 'Hund11513' => 'sun', 'Lalb_Chr06g0162591' => 'lal', 'Lalb_Chr06g0162601' => 'lal', 'Lalb_Chr06g0169321' => 'lal', 'Lalb_Chr09g0330951' => 'lal', 'Lalb_Chr16g0387631' => 'lal', 'Lalb_Chr21g0306241' => 'lal', 'Lalb_Chr25g0290051' => 'lal', 'Lalb_Chr25g0290061' => 'lal', 'Lalb_Chr25g0290071' => 'lal', 'Lj1g0003876' => 'lja', 'Lj1P1207T36' => 'lonja', 'Lj2C1156G12' => 'lonja', 'Lj3A793G39' => 'lonja', 'Lj3C580G2' => 'lonja', 'Lj3C780G2' => 'lonja', 'Lj3C780T4' => 'lonja', 'Lj3C793G9' => 'lonja', 'Lj4g0012960' => 'lja', 'Lj5g0021252' => 'lja', 'Lj5g0021484' => 'lja', 'Lj5g0024528' => 'lja', 'Lj6A399T12' => 'lonja', 'Lj6A656G65' => 'lonja', 'Lsat_1_v5_gn_3_125500' => 'lsa', 'Lsat_1_v5_gn_3_125540' => 'lsa', 'Lsat_1_v5_gn_5_72701' => 'lsa', 'Lsat_1_v5_gn_8_91560' => 'lsa', 'Lsat_1_v5_gn_9_9640' => 'lsa', 'Manes.01G200600' => 'mes', 'Manes.01G200700' => 'mes', 'Manes.03G168900' => 'mes', 'Manes.03G169000' => 'mes', 'Manes.05G085801' => 'mes', 'Manes.05G086200' => 'mes', 'Manes.15G036700' => 'mes', 'Manes.15G036900' => 'mes', 'Mapoly0004s0172' => 'mpo', 'Mapoly0023s0001' => 'mpo', 'Mapoly0142s0012' => 'mpo', 'MBI01_g32854_MAGBIO' => 'mbi', 'MBI11_g24427_MAGBIO' => 'mbi', 'MBI11_g47319_MAGBIO' => 'mbi', 'MCO01G433' => 'mco', 'MD00G1187800' => 'mdo', 'MD04G1226500' => 'mdo', 'MD05G1203900' => 'mdo', 'MD10G1191100' => 'mdo', 'MD12G1243500' => 'mdo', 'MD13G1207000' => 'mdo', 'MD13G1207100' => 'mdo', 'MD16G1208600' => 'mdo', 'Medtr1g050352' => 'mtr', 'Medtr1g070385' => 'mtr', 'Medtr1g070450' => 'mtr', 'Medtr1g075200' => 'mtr', 'Medtr1g075250' => 'mtr', 'Medtr1g075260' => 'mtr', 'Medtr1g475250' => 'mtr', 'Medtr4g075450' => 'mtr', 'Medtr7g096300' => 'mtr', 'Medtr8g105110' => 'mtr', 'MELO3C006470.2' => 'cme', 'MELO3C006471.2' => 'cme', 'MELO3C020772.2' => 'cme', 'MELO3C026780.2' => 'cme', 'MELO3C026781.2' => 'cme', 'Migut.D00390' => 'egut', 'Migut.G00435' => 'egut', 'Migut.G00436' => 'egut', 'Migut.G00718' => 'egut', 'MSTRG.21891' => 'ama', 'MSTRG.26910' => 'ama', 'MSTRG.4099' => 'ama', 'MSTRG.9925' => 'ama', 'Nitab4.5_0000165g0010' => 'nta', 'Nitab4.5_0000209g0180' => 'nta', 'Nitab4.5_0000244g0440' => 'nta', 'Nitab4.5_0000525g0220' => 'nta', 'Nitab4.5_0001597g0020' => 'nta', 'Nitab4.5_0001878g0040' => 'nta', 'Nitab4.5_0001878g0060' => 'nta', 'Nitab4.5_0002838g0100' => 'nta', 'Nitab4.5_0002838g0120' => 'nta', 'Nitab4.5_0004798g0030' => 'nta', 'Nitab4.5_0005420g0010' => 'nta', 'Nitab4.5_0005507g0010' => 'nta', 'Nitab4.5_0005574g0020' => 'nta', 'Nitab4.5_0005838g0010' => 'nta', 'Nitab4.5_0010580g0020' => 'nta', 'Nn1g02599' => 'nnu', 'Nn1g02608' => 'nnu', 'Nn3g17742' => 'nnu', 'Nn3g19534' => 'nnu', 'Nn3g19535' => 'nnu', 'Oeu008790.1' => 'oeu', 'Oeu008792.1' => 'oeu', 'Oeu032590.1' => 'oeu', 'Oeu035349.1' => 'oeu', 'Oeu049791.1' => 'oeu', 'Os01g0774500' => 'osa', 'Os03g0628800' => 'osa', 'Os03g0798600' => 'osa', 'Os05g0508800' => 'osa', 'Peaxi162Scf00036g02018' => 'pax', 'Peaxi162Scf00578g00032' => 'pax', 'Peaxi162Scf00578g00317' => 'pax', 'Peaxi162Scf00785g00114' => 'pax', 'Peaxi162Scf00813g00119' => 'pax', 'Peaxi162Scf00906g00227' => 'pax', 'PGR004G0875' => 'pgr', 'PGR004G2424' => 'pgr', 'PGR031G1239' => 'pgr', 'PGR031G2474' => 'pgr', 'PGR044G0423' => 'pgr', 'PGSC0003DMG400001128' => 'stu', 'PGSC0003DMG400007336' => 'stu', 'PGSC0003DMG400016318' => 'stu', 'PGSC0003DMG400016319' => 'stu', 'PGSC0003DMG400018074' => 'stu', 'Phvul.001G157700' => 'pvu', 'Phvul.002G148550' => 'pvu', 'Phvul.002G320200' => 'pvu', 'Phvul.003G089200' => 'pvu', 'Phvul.007G126000' => 'pvu', 'Phvul.007G126100' => 'pvu', 'Phvul.007G178000' => 'pvu', 'Phvul.007G178200' => 'pvu', 'Potri.002G043000' => 'ptr', 'Potri.002G043200' => 'ptr', 'Potri.003G123750' => 'ptr', 'Potri.005G055401' => 'ptr', 'Potri.005G219700' => 'ptr', 'Potri.005G220000' => 'ptr', 'Potri.008G161901' => 'ptr', 'Potri.008G162000' => 'ptr', 'Potri.008G162400' => 'ptr', 'Potri.010G076900' => 'ptr', 'Pp3c12_9180' => 'ppa', 'Pp3c13_19770' => 'ppa', 'Pp3c14_22950' => 'ppa', 'Pp3c16_12160' => 'ppa', 'Pp3c27_7820' => 'ppa', 'Pp3c2_3490' => 'ppa', 'Pp3c3_23700' => 'ppa', 'Pp3c3_36520' => 'ppa', 'Pp3c4_15250' => 'ppa', 'PRCOL_00007002' => 'pco', 'Prupe.1G030600' => 'ppe', 'Prupe.1G030700' => 'ppe', 'Prupe.6G345200' => 'ppe', 'Prupe.8G230300' => 'ppe', 'Prupe.8G230500' => 'ppe', 'Psat3g059600' => 'psa', 'Psat5g200920' => 'psa', 'Psat6g056440' => 'psa', 'Psat6g057360' => 'psa', 'Psat6g134120' => 'psa', 'Psat6g134160' => 'psa', 'Psat7g008640' => 'psa', 'Psat7g185240' => 'psa', 'PSO017G1330' => 'pso', 'PSO063G6097' => 'pso', 'PSO170G0835' => 'pso', 'PSO170G2499' => 'pso', 'PSO210G5058' => 'pso', 'PSO210G6154' => 'pso', 'PSO585G0031' => 'pso', 'PSO832G0264' => 'pso', 'PSO832G4288' => 'pso', 'QL03p027355' => 'qlo', 'QL03p027430' => 'qlo', 'QL04p081380' => 'qlo', 'QL06p015642' => 'qlo', 'QL06p015650' => 'qlo', 'QL06p015686' => 'qlo', 'QL12p042927' => 'qlo', 'QL93p1863_0035' => 'qlo', 'RcHm_v2.0_Chr3g0450581' => 'rch', 'RcHm_v2.0_Chr4g0390371' => 'rch', 'RcHm_v2.0_Chr4g0390381' => 'rch', 'RcHm_v2.0_Chr4g0390491' => 'rch', 'RcHm_v2.0_Chr4g0390501' => 'rch', 'RcHm_v2.0_Chr6g0289231' => 'rch', 'Rhsim04G0190400' => 'rsi', 'Rhsim04G0190500' => 'rsi', 'Rhsim04G0190600' => 'rsi', 'Rhsim13G0031400' => 'rsi', 'Rhsim13G0165600' => 'rsi', 'RhsimUnG0114600' => 'rsi', 'RhsimUnG0114700' => 'rsi', 'Sabra02G0034800' => 'sbr', 'Sabra02G0035100' => 'sbr', 'Sabra05G0168600' => 'sbr', 'Sabra05G0168800' => 'sbr', 'Sabra08G0123700' => 'sbr', 'Sabra10G0031900' => 'sbr', 'Sabra13G0039000' => 'sbr', 'SalBow2G0782' => 'sbo', 'SalBow2G1403' => 'sbo', 'SalBow4G0074' => 'sbo', 'SalBow4G2635' => 'sbo', 'SalBow5G3010' => 'sbo', 'Sc05g0000870' => 'sci', 'Sc05g0000890' => 'sci', 'Sc13g0005000' => 'sci', 'Sc13g0005030' => 'sci', 'Sc19g0003790' => 'sci', 'Sc19g0003800' => 'sci', 'Sed0003467' => 'sed', 'Sed0009355' => 'sed', 'Sed0009894' => 'sed', 'Sed0011972' => 'sed', 'Sed0021483' => 'sed', 'Sed0021750' => 'sed', 'Sed0026279' => 'sed', 'SEGI_05312' => 'sgi', 'SEGI_10112' => 'sgi', 'SEGI_15835' => 'sgi', 'SEGI_30386' => 'sgi', 'SEGI_34122' => 'sgi', 'SEGI_35063' => 'sgi', 'SGA_v2.0_scaffold101G29794' => 'sas', 'SGA_v2.0_scaffold1G00573' => 'sas', 'SGA_v2.0_scaffold79G25637' => 'sas', 'SGA_v2.0_scaffold88G27283' => 'sas', 'SGA_v2.0_scaffold88G27285' => 'sas', 'SGA_v2.0_scaffold88G27331' => 'sas', 'SHI09937' => 'shi', 'SMO119G0302' => 'smo', 'SMO137G0231' => 'smo', 'SMO367G1151' => 'smo', 'Solyc02g082000.3' => 'sly', 'Solyc06g031670.3' => 'sly', 'Solyc06g053810.3' => 'sly', 'Solyc07g025457.1' => 'sly', 'Solyc08g059740.1' => 'sly', 'Solyc08g059750.3' => 'sly', 'Solyc09g083370.3' => 'sly', 'Solyc12g038950.3' => 'sly', 'Sopen02g026630' => 'spe', 'Sopen06g018930' => 'spe', 'Sopen06g018940' => 'spe', 'Sopen08g009460' => 'spe', 'Sopen09g032290' => 'spe', 'Sp1g03080' => 'spa', 'Sp1g03090' => 'spa', 'Sp1g05480' => 'spa', 'Sp2g07860' => 'spa', 'Sp2g08430' => 'spa', 'Sp2g08440' => 'spa', 'Sp2g26200' => 'spa', 'Sp4g13170' => 'spa', 'Sp6g33840' => 'spa', 'SpUn1204_0010' => 'spa', 'TAR365G0908' => 'tar', 'TAR381G1270' => 'tar', 'TAR381G1651' => 'tar', 'TAR625G1131' => 'tar', 'TAR633G0962' => 'tar', 'TAR633G1729' => 'tar', 'TAR633G1864' => 'tar', 'TAR636G0221' => 'tar', 'TAR636G0314' => 'tar', 'TAR636G3202' => 'tar', 'THA.LOC104800805' => 'tha', 'THA.LOC104801096' => 'tha', 'THA.LOC104801555' => 'tha', 'THA.LOC104808491' => 'tha', 'THA.LOC104808595' => 'tha', 'THA.LOC104815985' => 'tha', 'THA.LOC104822250' => 'tha', 'THA.LOC104826071' => 'tha', 'Thecc.01G265200' => 'tca', 'Thecc.01G265300' => 'tca', 'Thecc.01G265700' => 'tca', 'Thecc.03G109100' => 'tca', 'Thecc.04G245900' => 'tca', 'Thecc.04G246000' => 'tca', 'Thhalv10003334m.g' => 'esa', 'Thhalv10005508m.g' => 'esa', 'Thhalv10005643m.g' => 'esa', 'Thhalv10007316m.g' => 'esa', 'Thhalv10009006m.g' => 'esa', 'Thhalv10009309m.g' => 'esa', 'Thhalv10014917m.g' => 'esa', 'Thhalv10014919m.g' => 'esa', 'Thhalv10015393m.g' => 'esa', 'Thhalv10016515m.g' => 'esa', 'Thhalv10029242m.g' => 'esa', 'TPR.G16654' => 'tpr', 'TPR.G20589' => 'tpr', 'TPR.G23029' => 'tpr', 'TPR.G27731' => 'tpr', 'TPR.G28889' => 'tpr', 'TPR.G28899' => 'tpr', 'TPR.G30846' => 'tpr', 'TPR.G5452' => 'tpr', 'TPR.G5713' => 'tpr', 'TPR.G9046' => 'tpr', 'TPR.G9061' => 'tpr', 'TWI09G1075' => 'twi', 'TWI12G0806' => 'twi', 'TWI18G0108' => 'twi', 'TWI53G1361' => 'twi', 'TWI73G0185' => 'twi', 'TWI73G0427' => 'twi', 'unitig_37.g12001' => 'ugi', 'unitig_747.g21660' => 'ugi', 'unitig_748.g7232' => 'ugi', 'unitig_748.g7315' => 'ugi', 'unitig_85.g27262' => 'ugi', 'unitig_92.g28220' => 'ugi', 'vmacro02632' => 'vma', 'vmacro08410' => 'vma', 'vmacro08411' => 'vma', 'vmacro15407' => 'vma', 'VMungo0251G3619' => 'vmu', 'VMungo0720G1204' => 'vmu', 'VMungo0720G1918' => 'vmu', 'VMungo0720G2387' => 'vmu', 'VMungo0720G2961' => 'vmu', 'VMungo1215G2154' => 'vmu', 'VMungo1383G2411' => 'vmu', 'Zm00001eb051130' => 'zma', 'Zm00001eb116830' => 'zma', 'Zm00001eb116850' => 'zma', 'Zm00001eb151740' => 'zma', 'Zm00001eb292360' => 'zma', 'Zm00001eb301640' => 'zma' ), 'gf_id' => 'HOM05D000856', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000856' ), 'data_identifier' => 'HOM05D000856', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000856', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p00010' => 'bna', 'A03p04160' => 'bna', 'A03p17160' => 'bna', 'A04p23370' => 'bna', 'A05p14860' => 'bna', 'A08p37020' => 'bna', 'A09p08050' => 'bna', 'A09p66800' => 'bna', 'A09p67940' => 'bna', 'A10p02680' => 'bna', 'A10p05320' => 'bna', 'Aa31LG1G20560' => 'aar', 'Aa31LG1G20610' => 'aar', 'Aa31LG1G7810' => 'aar', 'Aa31LG5G3590' => 'aar', 'Aa31LG5G6140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3819' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4683' => 'aag', 'Actinidia04480' => 'ach', 'Actinidia05466' => 'ach', 'Actinidia08445' => 'ach', 'Actinidia21170' => 'ach', 'Actinidia24812' => 'ach', 'Actinidia24951' => 'ach', 'Actinidia40088' => 'ach', 'Ah.02g111660' => 'amhyb', 'Ah.11g048900' => 'amhyb', 'Ah.11g049910' => 'amhyb', 'AL1G13870' => 'aly', 'AL1G13880' => 'aly', 'AL1G16760' => 'aly', 'AL390U10020' => 'aly', 'AL4G25520' => 'aly', 'AL6G19890' => 'aly', 'AL6G19900' => 'aly', 'AL6G19910' => 'aly', 'AL8G40100' => 'aly', 'Aqoxy2G03562' => 'aox', 'Aqoxy5G00316' => 'aox', 'Aqoxy5G00926' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1628KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1H403S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2FU6SJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.882I6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8YRY2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YN1SN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AF70II' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZA8L1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F916KL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHRD8H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KTZ8QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S22EMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8M29T' => 'arhy', 'AT1G04270' => 'ath', 'AT1G04280' => 'ath', 'AT1G06750' => 'ath', 'AT1G33850' => 'ath', 'AT2G30630' => 'ath', 'AT5G09490' => 'ath', 'AT5G09500' => 'ath', 'AT5G09510' => 'ath', 'AT5G43640' => 'ath', 'AT5G63070' => 'ath', 'ATR0605G315' => 'atr', 'Atru.chr11.175' => 'acertr', 'Atru.chr11.653' => 'acertr', 'Atru.chr3.1616' => 'acertr', 'Atru.chr4.2230' => 'acertr', 'Atru.chr4.2232' => 'acertr', 'Atru.chr5.1598' => 'acertr', 'Atru.chr5.1600' => 'acertr', 'Atru.chr5.2188' => 'acertr', 'AUR62008326' => 'cqu', 'AUR62011922' => 'cqu', 'AUR62011924' => 'cqu', 'AUR62021771' => 'cqu', 'AUR62032237' => 'cqu', 'AUR62032240' => 'cqu', 'BcaB01g05572' => 'bca', 'BcaB02g10337' => 'bca', 'BcaB04g19944' => 'bca', 'BcaB05g21548' => 'bca', 'BcaB05g21549' => 'bca', 'BcaB05g23227' => 'bca', 'BcaB06g26256' => 'bca', 'BcaB06g26257' => 'bca', 'BcaB06g28379' => 'bca', 'BcaC02g11159' => 'bca', 'BcaC03g13258' => 'bca', 'BcaC03g13259' => 'bca', 'BcaC05g24456' => 'bca', 'BcaC05g24457' => 'bca', 'BcaC07g36922' => 'bca', 'BcaC07g36923' => 'bca', 'BcaC07g42050' => 'bca', 'BcaC07g42176' => 'bca', 'BcaC07g42195' => 'bca', 'BcaC07g42196' => 'bca', 'BcaNung06674' => 'bca', 'BolC2t06351H' => 'bol', 'BolC2t06352H' => 'bol', 'BolC3t12993H' => 'bol', 'BolC4t23525H' => 'bol', 'BolC4t27475H' => 'bol', 'BolC5t29025H' => 'bol', 'BolC5t29026H' => 'bol', 'BolC8t46898H' => 'bol', 'BolC8t46899H' => 'bol', 'BolC8t52630H' => 'bol', 'BolC8t52765H' => 'bol', 'BolC9t53824H' => 'bol', 'BraA03t09760Z' => 'bra', 'BraA03t10990Z' => 'bra', 'BraA05t20413Z' => 'bra', 'BraA08t35602Z' => 'bra', 'BraA09t36458Z' => 'bra', 'BraA09t42018Z' => 'bra', 'BraA09t42129Z' => 'bra', 'BraA10t42536Z' => 'bra', 'BraA10t42537Z' => 'bra', 'C01p10690' => 'bna', 'C02p03890' => 'bna', 'C02p03900' => 'bna', 'C03p04620' => 'bna', 'C04p19870' => 'bna', 'C04p59670' => 'bna', 'C05p02460' => 'bna', 'C05p02470' => 'bna', 'C08p00980' => 'bna', 'C08p00990' => 'bna', 'C08p51030' => 'bna', 'C08p52360' => 'bna', 'C09p09120' => 'bna', 'CAN.G19.15' => 'can', 'CAN.G251.10' => 'can', 'CAN.G251.9' => 'can', 'CAN.G398.24' => 'can', 'CAN.G410.32' => 'can', 'CAN.G881.2' => 'can', 'CANSAT01G3025' => 'cansat', 'CANSAT78G1211' => 'cansat', 'CANSAT78G1218' => 'cansat', 'CANSAT78G1521' => 'cansat', 'CANSAT78G1670' => 'cansat', 'CARHR003600' => 'chi', 'CARHR003610' => 'chi', 'CARHR006290' => 'chi', 'CARHR006430' => 'chi', 'CARHR124110' => 'chi', 'CARHR203870' => 'chi', 'CARHR203880' => 'chi', 'CARHR203890' => 'chi', 'CARHR276880' => 'chi', 'Carub.0001s0346' => 'cru', 'Carub.0001s0347' => 'cru', 'Carub.0001s0607' => 'cru', 'Carub.0003s2768' => 'cru', 'Carub.0003s2769' => 'cru', 'Carub.0004s1178' => 'cru', 'Carub.0006s0806' => 'cru', 'Carub.0006s0807' => 'cru', 'Carub.0006s0808' => 'cru', 'Carub.0008s0501' => 'cru', 'Carub.0008s2379' => 'cru', 'Ca_08655_v3' => 'car', 'Ca_08922_v3' => 'car', 'Ca_08923_v3' => 'car', 'Ca_09119_v3' => 'car', 'Ca_09703_v3' => 'car', 'Ca_09705_v3' => 'car', 'Ca_09835_v3' => 'car', 'Ca_26403_v3' => 'car', 'Ca_30719_v3' => 'car', 'CBR_g17958' => 'cbr', 'CBR_g40516' => 'cbr', 'Cc00_g05350' => 'ccan', 'Cc01_g18690' => 'ccan', 'Cc03_g04830' => 'ccan', 'Cc03_g04850' => 'ccan', 'CDE02G4469' => 'cde', 'CDE06G0883' => 'cde', 'CDE06G1295' => 'cde', 'CDE06G1390' => 'cde', 'CDE07G0584' => 'cde', 'CDE07G1084' => 'cde', 'CDE08G1259' => 'cde', 'Cfa002341' => 'cfa', 'Cfa024337' => 'cfa', 'Ciclev10004749m.g' => 'ccl', 'Ciclev10006127m.g' => 'ccl', 'Ciclev10019720m.g' => 'ccl', 'Ciclev10022652m.g' => 'ccl', 'CiPaw.01G190400' => 'cil', 'CiPaw.01G190500' => 'cil', 'CiPaw.02G116400' => 'cil', 'CiPaw.02G116500' => 'cil', 'CiPaw.04G183000' => 'cil', 'CiPaw.04G183300' => 'cil', 'ClCG05G004610' => 'cla', 'ClCG05G004620' => 'cla', 'ClCG06G006730' => 'cla', 'ClCG06G006740' => 'cla', 'ClCG11G003690' => 'cla', 'COL.COLO4_08276' => 'col', 'COL.COLO4_08277' => 'col', 'COL.COLO4_15787' => 'col', 'COL.COLO4_15789' => 'col', 'Cpa.g.c44815' => 'cpa', 'Cpa.g.sc52.144' => 'cpa', 'Cpa.g.sc58.46' => 'cpa', 'Cpa.g.sc58.47' => 'cpa', 'Cre08.g360900' => 'cre', 'CsaV3_2G013030' => 'csa', 'CsaV3_2G013050' => 'csa', 'CsaV3_2G015620' => 'csa', 'CsaV3_3G012590' => 'csa', 'CsaV3_3G012600' => 'csa', 'CSS0001641' => 'camsi', 'CSS0008310' => 'camsi', 'CSS0013011' => 'camsi', 'CSS0017147' => 'camsi', 'CSS0022970' => 'camsi', 'CSS0025655' => 'camsi', 'CSS0028665' => 'camsi', 'CSS0029117' => 'camsi', 'CSS0032024' => 'camsi', 'CSS0039681' => 'camsi', 'CSS0046516' => 'camsi', 'CSS0050307' => 'camsi', 'DCAR_005871' => 'dca', 'DCAR_007342' => 'dca', 'DCAR_024228' => 'dca', 'DCAR_027277' => 'dca', 'DCAR_030718' => 'dca', 'Dinv20287' => 'din', 'Dinv22461' => 'din', 'Dinv22464' => 'din', 'Dinv29912' => 'din', 'Dinv29913' => 'din', 'Dinv34580' => 'din', 'Dinv34582' => 'din', 'Dinv44632' => 'din', 'Duzib052G0266' => 'dzi', 'Duzib133G0907' => 'dzi', 'Duzib133G1034' => 'dzi', 'Duzib138G0207' => 'dzi', 'Duzib138G0491' => 'dzi', 'Duzib151G0812' => 'dzi', 'Duzib151G1166' => 'dzi', 'Duzib168G0192' => 'dzi', 'Duzib211G0077' => 'dzi', 'Duzib212G0429' => 'dzi', 'Duzib212G0472' => 'dzi', 'ECA233G2617' => 'eca', 'ECA236G4188' => 'eca', 'ECA240G0936' => 'eca', 'ECA240G1129' => 'eca', 'ECA247G0623' => 'eca', 'EL10Ac5g10451' => 'bvu', 'EL10Ac5g10453' => 'bvu', 'EL10Ac5g10894' => 'bvu', 'Eucgr.H00192' => 'egr', 'Eucgr.H00193' => 'egr', 'Eucgr.H00194' => 'egr', 'Eucgr.J01562' => 'egr', 'Eucgr.K03301' => 'egr', 'FAN02G0632' => 'fan', 'FAN05G5378' => 'fan', 'FAN09G3247' => 'fan', 'FAN12G0435' => 'fan', 'FAN12G2426' => 'fan', 'FAN14G1707' => 'fan', 'FAN14G4725' => 'fan', 'FAN15G2071' => 'fan', 'FAN17G3065' => 'fan', 'FAN19G1376' => 'fan', 'FAN20G0354' => 'fan', 'FAN20G2429' => 'fan', 'FAN20G2658' => 'fan', 'FAN24G2343' => 'fan', 'FAN27G2362' => 'fan', 'FAN28G1765' => 'fan', 'FvH4_1g16020' => 'fve', 'FvH4_2g04890' => 'fve', 'FvH4_2g22270' => 'fve', 'FvH4_4g02630' => 'fve', 'FvH4_4g02640' => 'fve', 'FvH4_6g02650' => 'fve', 'Glyma.02G140600' => 'gma', 'Glyma.03G159900' => 'gma', 'Glyma.05G234800' => 'gma', 'Glyma.07G269600' => 'gma', 'Glyma.08G042300' => 'gma', 'Glyma.10G033500' => 'gma', 'Glyma.10G185200' => 'gma', 'Glyma.17G004300' => 'gma', 'Glyma.19G161900' => 'gma', 'Glyma.20G205100' => 'gma', 'Glyma.20G205200' => 'gma', 'Gohir.A01G139101' => 'ghi', 'Gohir.A02G035600' => 'ghi', 'Gohir.A02G117901' => 'ghi', 'Gohir.A07G210100' => 'ghi', 'Gohir.A07G210200' => 'ghi', 'Gohir.A08G061100' => 'ghi', 'Gohir.A09G223000' => 'ghi', 'Gohir.A09G223100' => 'ghi', 'Gohir.A10G113900' => 'ghi', 'Gohir.A10G114000' => 'ghi', 'Gohir.D02G042300' => 'ghi', 'Gohir.D07G216100' => 'ghi', 'Gohir.D07G216200' => 'ghi', 'Gohir.D08G070400' => 'ghi', 'Gohir.D09G225000' => 'ghi', 'Gohir.D09G225100' => 'ghi', 'Gohir.D10G152300' => 'ghi', 'Gohir.D10G153200' => 'ghi', 'Gohir.D11G133701' => 'ghi', 'Gorai.004G074100' => 'gra', 'Gorai.005G046800' => 'gra', 'Gorai.006G246500' => 'gra', 'Gorai.006G246600' => 'gra', 'Gorai.007G142900' => 'gra', 'Gorai.011G171000' => 'gra', 'Gorai.011G171100' => 'gra', 'Gorai.013G104300' => 'gra', 'Gorai.013G104400' => 'gra', 'GSVIVG01000754001' => 'vvi', 'GSVIVG01000756001' => 'vvi', 'GSVIVG01010903001' => 'vvi', 'GSVIVG01017623001' => 'vvi', 'GSVIVG01018113001' => 'vvi', 'GSVIVG01018116001' => 'vvi', 'GSVIVG01018118001' => 'vvi', 'HanXRQChr03g0076211' => 'han', 'HanXRQChr03g0092431' => 'han', 'HanXRQChr03g0092441' => 'han', 'HanXRQChr03g0092591' => 'han', 'HanXRQChr03g0092671' => 'han', 'HanXRQChr03g0092681' => 'han', 'HanXRQChr03g0092691' => 'han', 'HanXRQChr03g0092701' => 'han', 'HanXRQChr03g0092721' => 'han', 'HanXRQChr03g0092731' => 'han', 'HanXRQChr04g0113681' => 'han', 'HanXRQChr10g0281371' => 'han', 'HanXRQChr11g0337141' => 'han', 'HanXRQChr13g0424521' => 'han', 'HanXRQChr13g0424531' => 'han', 'HanXRQChr13g0424541' => 'han', 'HanXRQChr16g0498221' => 'han', 'Haze_04377' => 'cav', 'Haze_11298' => 'cav', 'Haze_24547' => 'cav', 'Haze_24550' => 'cav', 'Haze_26587' => 'cav', 'Hma1.2p1_0650F.1_g195410' => 'hma', 'Hma1.2p1_0893F.1_g233470' => 'hma', 'HPP92_006508' => 'vpl', 'HPP92_024780' => 'vpl', 'Hund02688' => 'sun', 'Hund09380' => 'sun', 'Hund09381' => 'sun', 'Hund09832' => 'sun', 'Hund09833' => 'sun', 'Hund11351' => 'sun', 'Hund11513' => 'sun', 'Lalb_Chr06g0162591' => 'lal', 'Lalb_Chr06g0162601' => 'lal', 'Lalb_Chr06g0169321' => 'lal', 'Lalb_Chr09g0330951' => 'lal', 'Lalb_Chr16g0387631' => 'lal', 'Lalb_Chr21g0306241' => 'lal', 'Lalb_Chr25g0290051' => 'lal', 'Lalb_Chr25g0290061' => 'lal', 'Lalb_Chr25g0290071' => 'lal', 'Lj1g0003876' => 'lja', 'Lj1P1207T36' => 'lonja', 'Lj2C1156G12' => 'lonja', 'Lj3A793G39' => 'lonja', 'Lj3C580G2' => 'lonja', 'Lj3C780G2' => 'lonja', 'Lj3C780T4' => 'lonja', 'Lj3C793G9' => 'lonja', 'Lj4g0012960' => 'lja', 'Lj5g0021252' => 'lja', 'Lj5g0021484' => 'lja', 'Lj5g0024528' => 'lja', 'Lj6A399T12' => 'lonja', 'Lj6A656G65' => 'lonja', 'Lsat_1_v5_gn_3_125500' => 'lsa', 'Lsat_1_v5_gn_3_125540' => 'lsa', 'Lsat_1_v5_gn_5_72701' => 'lsa', 'Lsat_1_v5_gn_8_91560' => 'lsa', 'Lsat_1_v5_gn_9_9640' => 'lsa', 'Manes.01G200600' => 'mes', 'Manes.01G200700' => 'mes', 'Manes.03G168900' => 'mes', 'Manes.03G169000' => 'mes', 'Manes.05G085801' => 'mes', 'Manes.05G086200' => 'mes', 'Manes.15G036700' => 'mes', 'Manes.15G036900' => 'mes', 'Mapoly0004s0172' => 'mpo', 'Mapoly0023s0001' => 'mpo', 'Mapoly0142s0012' => 'mpo', 'MBI01_g32854_MAGBIO' => 'mbi', 'MBI11_g24427_MAGBIO' => 'mbi', 'MBI11_g47319_MAGBIO' => 'mbi', 'MCO01G433' => 'mco', 'MD00G1187800' => 'mdo', 'MD04G1226500' => 'mdo', 'MD05G1203900' => 'mdo', 'MD10G1191100' => 'mdo', 'MD12G1243500' => 'mdo', 'MD13G1207000' => 'mdo', 'MD13G1207100' => 'mdo', 'MD16G1208600' => 'mdo', 'Medtr1g050352' => 'mtr', 'Medtr1g070385' => 'mtr', 'Medtr1g070450' => 'mtr', 'Medtr1g075200' => 'mtr', 'Medtr1g075250' => 'mtr', 'Medtr1g075260' => 'mtr', 'Medtr1g475250' => 'mtr', 'Medtr4g075450' => 'mtr', 'Medtr7g096300' => 'mtr', 'Medtr8g105110' => 'mtr', 'MELO3C006470.2' => 'cme', 'MELO3C006471.2' => 'cme', 'MELO3C020772.2' => 'cme', 'MELO3C026780.2' => 'cme', 'MELO3C026781.2' => 'cme', 'Migut.D00390' => 'egut', 'Migut.G00435' => 'egut', 'Migut.G00436' => 'egut', 'Migut.G00718' => 'egut', 'MSTRG.21891' => 'ama', 'MSTRG.26910' => 'ama', 'MSTRG.4099' => 'ama', 'MSTRG.9925' => 'ama', 'Nitab4.5_0000165g0010' => 'nta', 'Nitab4.5_0000209g0180' => 'nta', 'Nitab4.5_0000244g0440' => 'nta', 'Nitab4.5_0000525g0220' => 'nta', 'Nitab4.5_0001597g0020' => 'nta', 'Nitab4.5_0001878g0040' => 'nta', 'Nitab4.5_0001878g0060' => 'nta', 'Nitab4.5_0002838g0100' => 'nta', 'Nitab4.5_0002838g0120' => 'nta', 'Nitab4.5_0004798g0030' => 'nta', 'Nitab4.5_0005420g0010' => 'nta', 'Nitab4.5_0005507g0010' => 'nta', 'Nitab4.5_0005574g0020' => 'nta', 'Nitab4.5_0005838g0010' => 'nta', 'Nitab4.5_0010580g0020' => 'nta', 'Nn1g02599' => 'nnu', 'Nn1g02608' => 'nnu', 'Nn3g17742' => 'nnu', 'Nn3g19534' => 'nnu', 'Nn3g19535' => 'nnu', 'Oeu008790.1' => 'oeu', 'Oeu008792.1' => 'oeu', 'Oeu032590.1' => 'oeu', 'Oeu035349.1' => 'oeu', 'Oeu049791.1' => 'oeu', 'Os01g0774500' => 'osa', 'Os03g0628800' => 'osa', 'Os03g0798600' => 'osa', 'Os05g0508800' => 'osa', 'Peaxi162Scf00036g02018' => 'pax', 'Peaxi162Scf00578g00032' => 'pax', 'Peaxi162Scf00578g00317' => 'pax', 'Peaxi162Scf00785g00114' => 'pax', 'Peaxi162Scf00813g00119' => 'pax', 'Peaxi162Scf00906g00227' => 'pax', 'PGR004G0875' => 'pgr', 'PGR004G2424' => 'pgr', 'PGR031G1239' => 'pgr', 'PGR031G2474' => 'pgr', 'PGR044G0423' => 'pgr', 'PGSC0003DMG400001128' => 'stu', 'PGSC0003DMG400007336' => 'stu', 'PGSC0003DMG400016318' => 'stu', 'PGSC0003DMG400016319' => 'stu', 'PGSC0003DMG400018074' => 'stu', 'Phvul.001G157700' => 'pvu', 'Phvul.002G148550' => 'pvu', 'Phvul.002G320200' => 'pvu', 'Phvul.003G089200' => 'pvu', 'Phvul.007G126000' => 'pvu', 'Phvul.007G126100' => 'pvu', 'Phvul.007G178000' => 'pvu', 'Phvul.007G178200' => 'pvu', 'Potri.002G043000' => 'ptr', 'Potri.002G043200' => 'ptr', 'Potri.003G123750' => 'ptr', 'Potri.005G055401' => 'ptr', 'Potri.005G219700' => 'ptr', 'Potri.005G220000' => 'ptr', 'Potri.008G161901' => 'ptr', 'Potri.008G162000' => 'ptr', 'Potri.008G162400' => 'ptr', 'Potri.010G076900' => 'ptr', 'Pp3c12_9180' => 'ppa', 'Pp3c13_19770' => 'ppa', 'Pp3c14_22950' => 'ppa', 'Pp3c16_12160' => 'ppa', 'Pp3c27_7820' => 'ppa', 'Pp3c2_3490' => 'ppa', 'Pp3c3_23700' => 'ppa', 'Pp3c3_36520' => 'ppa', 'Pp3c4_15250' => 'ppa', 'PRCOL_00007002' => 'pco', 'Prupe.1G030600' => 'ppe', 'Prupe.1G030700' => 'ppe', 'Prupe.6G345200' => 'ppe', 'Prupe.8G230300' => 'ppe', 'Prupe.8G230500' => 'ppe', 'Psat3g059600' => 'psa', 'Psat5g200920' => 'psa', 'Psat6g056440' => 'psa', 'Psat6g057360' => 'psa', 'Psat6g134120' => 'psa', 'Psat6g134160' => 'psa', 'Psat7g008640' => 'psa', 'Psat7g185240' => 'psa', 'PSO017G1330' => 'pso', 'PSO063G6097' => 'pso', 'PSO170G0835' => 'pso', 'PSO170G2499' => 'pso', 'PSO210G5058' => 'pso', 'PSO210G6154' => 'pso', 'PSO585G0031' => 'pso', 'PSO832G0264' => 'pso', 'PSO832G4288' => 'pso', 'QL03p027355' => 'qlo', 'QL03p027430' => 'qlo', 'QL04p081380' => 'qlo', 'QL06p015642' => 'qlo', 'QL06p015650' => 'qlo', 'QL06p015686' => 'qlo', 'QL12p042927' => 'qlo', 'QL93p1863_0035' => 'qlo', 'RcHm_v2.0_Chr3g0450581' => 'rch', 'RcHm_v2.0_Chr4g0390371' => 'rch', 'RcHm_v2.0_Chr4g0390381' => 'rch', 'RcHm_v2.0_Chr4g0390491' => 'rch', 'RcHm_v2.0_Chr4g0390501' => 'rch', 'RcHm_v2.0_Chr6g0289231' => 'rch', 'Rhsim04G0190400' => 'rsi', 'Rhsim04G0190500' => 'rsi', 'Rhsim04G0190600' => 'rsi', 'Rhsim13G0031400' => 'rsi', 'Rhsim13G0165600' => 'rsi', 'RhsimUnG0114600' => 'rsi', 'RhsimUnG0114700' => 'rsi', 'Sabra02G0034800' => 'sbr', 'Sabra02G0035100' => 'sbr', 'Sabra05G0168600' => 'sbr', 'Sabra05G0168800' => 'sbr', 'Sabra08G0123700' => 'sbr', 'Sabra10G0031900' => 'sbr', 'Sabra13G0039000' => 'sbr', 'SalBow2G0782' => 'sbo', 'SalBow2G1403' => 'sbo', 'SalBow4G0074' => 'sbo', 'SalBow4G2635' => 'sbo', 'SalBow5G3010' => 'sbo', 'Sc05g0000870' => 'sci', 'Sc05g0000890' => 'sci', 'Sc13g0005000' => 'sci', 'Sc13g0005030' => 'sci', 'Sc19g0003790' => 'sci', 'Sc19g0003800' => 'sci', 'Sed0003467' => 'sed', 'Sed0009355' => 'sed', 'Sed0009894' => 'sed', 'Sed0011972' => 'sed', 'Sed0021483' => 'sed', 'Sed0021750' => 'sed', 'Sed0026279' => 'sed', 'SEGI_05312' => 'sgi', 'SEGI_10112' => 'sgi', 'SEGI_15835' => 'sgi', 'SEGI_30386' => 'sgi', 'SEGI_34122' => 'sgi', 'SEGI_35063' => 'sgi', 'SGA_v2.0_scaffold101G29794' => 'sas', 'SGA_v2.0_scaffold1G00573' => 'sas', 'SGA_v2.0_scaffold79G25637' => 'sas', 'SGA_v2.0_scaffold88G27283' => 'sas', 'SGA_v2.0_scaffold88G27285' => 'sas', 'SGA_v2.0_scaffold88G27331' => 'sas', 'SHI09937' => 'shi', 'SMO119G0302' => 'smo', 'SMO137G0231' => 'smo', 'SMO367G1151' => 'smo', 'Solyc02g082000.3' => 'sly', 'Solyc06g031670.3' => 'sly', 'Solyc06g053810.3' => 'sly', 'Solyc07g025457.1' => 'sly', 'Solyc08g059740.1' => 'sly', 'Solyc08g059750.3' => 'sly', 'Solyc09g083370.3' => 'sly', 'Solyc12g038950.3' => 'sly', 'Sopen02g026630' => 'spe', 'Sopen06g018930' => 'spe', 'Sopen06g018940' => 'spe', 'Sopen08g009460' => 'spe', 'Sopen09g032290' => 'spe', 'Sp1g03080' => 'spa', 'Sp1g03090' => 'spa', 'Sp1g05480' => 'spa', 'Sp2g07860' => 'spa', 'Sp2g08430' => 'spa', 'Sp2g08440' => 'spa', 'Sp2g26200' => 'spa', 'Sp4g13170' => 'spa', 'Sp6g33840' => 'spa', 'SpUn1204_0010' => 'spa', 'TAR365G0908' => 'tar', 'TAR381G1270' => 'tar', 'TAR381G1651' => 'tar', 'TAR625G1131' => 'tar', 'TAR633G0962' => 'tar', 'TAR633G1729' => 'tar', 'TAR633G1864' => 'tar', 'TAR636G0221' => 'tar', 'TAR636G0314' => 'tar', 'TAR636G3202' => 'tar', 'THA.LOC104800805' => 'tha', 'THA.LOC104801096' => 'tha', 'THA.LOC104801555' => 'tha', 'THA.LOC104808491' => 'tha', 'THA.LOC104808595' => 'tha', 'THA.LOC104815985' => 'tha', 'THA.LOC104822250' => 'tha', 'THA.LOC104826071' => 'tha', 'Thecc.01G265200' => 'tca', 'Thecc.01G265300' => 'tca', 'Thecc.01G265700' => 'tca', 'Thecc.03G109100' => 'tca', 'Thecc.04G245900' => 'tca', 'Thecc.04G246000' => 'tca', 'Thhalv10003334m.g' => 'esa', 'Thhalv10005508m.g' => 'esa', 'Thhalv10005643m.g' => 'esa', 'Thhalv10007316m.g' => 'esa', 'Thhalv10009006m.g' => 'esa', 'Thhalv10009309m.g' => 'esa', 'Thhalv10014917m.g' => 'esa', 'Thhalv10014919m.g' => 'esa', 'Thhalv10015393m.g' => 'esa', 'Thhalv10016515m.g' => 'esa', 'Thhalv10029242m.g' => 'esa', 'TPR.G16654' => 'tpr', 'TPR.G20589' => 'tpr', 'TPR.G23029' => 'tpr', 'TPR.G27731' => 'tpr', 'TPR.G28889' => 'tpr', 'TPR.G28899' => 'tpr', 'TPR.G30846' => 'tpr', 'TPR.G5452' => 'tpr', 'TPR.G5713' => 'tpr', 'TPR.G9046' => 'tpr', 'TPR.G9061' => 'tpr', 'TWI09G1075' => 'twi', 'TWI12G0806' => 'twi', 'TWI18G0108' => 'twi', 'TWI53G1361' => 'twi', 'TWI73G0185' => 'twi', 'TWI73G0427' => 'twi', 'unitig_37.g12001' => 'ugi', 'unitig_747.g21660' => 'ugi', 'unitig_748.g7232' => 'ugi', 'unitig_748.g7315' => 'ugi', 'unitig_85.g27262' => 'ugi', 'unitig_92.g28220' => 'ugi', 'vmacro02632' => 'vma', 'vmacro08410' => 'vma', 'vmacro08411' => 'vma', 'vmacro15407' => 'vma', 'VMungo0251G3619' => 'vmu', 'VMungo0720G1204' => 'vmu', 'VMungo0720G1918' => 'vmu', 'VMungo0720G2387' => 'vmu', 'VMungo0720G2961' => 'vmu', 'VMungo1215G2154' => 'vmu', 'VMungo1383G2411' => 'vmu', 'Zm00001eb051130' => 'zma', 'Zm00001eb116830' => 'zma', 'Zm00001eb116850' => 'zma', 'Zm00001eb151740' => 'zma', 'Zm00001eb292360' => 'zma', 'Zm00001eb301640' => 'zma' ) $gf_id = 'HOM05D000856' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000856' ) $data_identifier = 'HOM05D000856' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 13, 'ath' => (int) 10, 'atr' => (int) 1, 'acertr' => (int) 8, 'cqu' => (int) 6, 'bca' => (int) 21, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 11, 'car' => (int) 9, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 8, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 5, 'fan' => (int) 16, 'fve' => (int) 6, 'gma' => (int) 11, 'ghi' => (int) 19, 'gra' => (int) 9, 'vvi' => (int) 7, 'han' => (int) 17, 'cav' => (int) 5, 'hma' => (int) 2, 'vpl' => (int) 2, 'sun' => (int) 7, 'lal' => (int) 9, 'lja' => (int) 5, 'lonja' => (int) 9, 'lsa' => (int) 5, 'mes' => (int) 8, 'mpo' => (int) 3, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 10, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 15, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 9, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 9, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 6, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 5, 'spa' => (int) 10, 'tar' => (int) 10, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 11, 'tpr' => (int) 11, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 4, 'vmu' => (int) 7, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb301640' $species_info = array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ) $local_species = 'pax' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000856', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p00010' => 'bna', 'A03p04160' => 'bna', 'A03p17160' => 'bna', 'A04p23370' => 'bna', 'A05p14860' => 'bna', 'A08p37020' => 'bna', 'A09p08050' => 'bna', 'A09p66800' => 'bna', 'A09p67940' => 'bna', 'A10p02680' => 'bna', 'A10p05320' => 'bna', 'Aa31LG1G20560' => 'aar', 'Aa31LG1G20610' => 'aar', 'Aa31LG1G7810' => 'aar', 'Aa31LG5G3590' => 'aar', 'Aa31LG5G6140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3819' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4683' => 'aag', 'Actinidia04480' => 'ach', 'Actinidia05466' => 'ach', 'Actinidia08445' => 'ach', 'Actinidia21170' => 'ach', 'Actinidia24812' => 'ach', 'Actinidia24951' => 'ach', 'Actinidia40088' => 'ach', 'Ah.02g111660' => 'amhyb', 'Ah.11g048900' => 'amhyb', 'Ah.11g049910' => 'amhyb', 'AL1G13870' => 'aly', 'AL1G13880' => 'aly', 'AL1G16760' => 'aly', 'AL390U10020' => 'aly', 'AL4G25520' => 'aly', 'AL6G19890' => 'aly', 'AL6G19900' => 'aly', 'AL6G19910' => 'aly', 'AL8G40100' => 'aly', 'Aqoxy2G03562' => 'aox', 'Aqoxy5G00316' => 'aox', 'Aqoxy5G00926' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1628KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1H403S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2FU6SJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.882I6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8YRY2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YN1SN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AF70II' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZA8L1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F916KL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHRD8H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KTZ8QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S22EMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8M29T' => 'arhy', 'AT1G04270' => 'ath', 'AT1G04280' => 'ath', 'AT1G06750' => 'ath', 'AT1G33850' => 'ath', 'AT2G30630' => 'ath', 'AT5G09490' => 'ath', 'AT5G09500' => 'ath', 'AT5G09510' => 'ath', 'AT5G43640' => 'ath', 'AT5G63070' => 'ath', 'ATR0605G315' => 'atr', 'Atru.chr11.175' => 'acertr', 'Atru.chr11.653' => 'acertr', 'Atru.chr3.1616' => 'acertr', 'Atru.chr4.2230' => 'acertr', 'Atru.chr4.2232' => 'acertr', 'Atru.chr5.1598' => 'acertr', 'Atru.chr5.1600' => 'acertr', 'Atru.chr5.2188' => 'acertr', 'AUR62008326' => 'cqu', 'AUR62011922' => 'cqu', 'AUR62011924' => 'cqu', 'AUR62021771' => 'cqu', 'AUR62032237' => 'cqu', 'AUR62032240' => 'cqu', 'BcaB01g05572' => 'bca', 'BcaB02g10337' => 'bca', 'BcaB04g19944' => 'bca', 'BcaB05g21548' => 'bca', 'BcaB05g21549' => 'bca', 'BcaB05g23227' => 'bca', 'BcaB06g26256' => 'bca', 'BcaB06g26257' => 'bca', 'BcaB06g28379' => 'bca', 'BcaC02g11159' => 'bca', 'BcaC03g13258' => 'bca', 'BcaC03g13259' => 'bca', 'BcaC05g24456' => 'bca', 'BcaC05g24457' => 'bca', 'BcaC07g36922' => 'bca', 'BcaC07g36923' => 'bca', 'BcaC07g42050' => 'bca', 'BcaC07g42176' => 'bca', 'BcaC07g42195' => 'bca', 'BcaC07g42196' => 'bca', 'BcaNung06674' => 'bca', 'BolC2t06351H' => 'bol', 'BolC2t06352H' => 'bol', 'BolC3t12993H' => 'bol', 'BolC4t23525H' => 'bol', 'BolC4t27475H' => 'bol', 'BolC5t29025H' => 'bol', 'BolC5t29026H' => 'bol', 'BolC8t46898H' => 'bol', 'BolC8t46899H' => 'bol', 'BolC8t52630H' => 'bol', 'BolC8t52765H' => 'bol', 'BolC9t53824H' => 'bol', 'BraA03t09760Z' => 'bra', 'BraA03t10990Z' => 'bra', 'BraA05t20413Z' => 'bra', 'BraA08t35602Z' => 'bra', 'BraA09t36458Z' => 'bra', 'BraA09t42018Z' => 'bra', 'BraA09t42129Z' => 'bra', 'BraA10t42536Z' => 'bra', 'BraA10t42537Z' => 'bra', 'C01p10690' => 'bna', 'C02p03890' => 'bna', 'C02p03900' => 'bna', 'C03p04620' => 'bna', 'C04p19870' => 'bna', 'C04p59670' => 'bna', 'C05p02460' => 'bna', 'C05p02470' => 'bna', 'C08p00980' => 'bna', 'C08p00990' => 'bna', 'C08p51030' => 'bna', 'C08p52360' => 'bna', 'C09p09120' => 'bna', 'CAN.G19.15' => 'can', 'CAN.G251.10' => 'can', 'CAN.G251.9' => 'can', 'CAN.G398.24' => 'can', 'CAN.G410.32' => 'can', 'CAN.G881.2' => 'can', 'CANSAT01G3025' => 'cansat', 'CANSAT78G1211' => 'cansat', 'CANSAT78G1218' => 'cansat', 'CANSAT78G1521' => 'cansat', 'CANSAT78G1670' => 'cansat', 'CARHR003600' => 'chi', 'CARHR003610' => 'chi', 'CARHR006290' => 'chi', 'CARHR006430' => 'chi', 'CARHR124110' => 'chi', 'CARHR203870' => 'chi', 'CARHR203880' => 'chi', 'CARHR203890' => 'chi', 'CARHR276880' => 'chi', 'Carub.0001s0346' => 'cru', 'Carub.0001s0347' => 'cru', 'Carub.0001s0607' => 'cru', 'Carub.0003s2768' => 'cru', 'Carub.0003s2769' => 'cru', 'Carub.0004s1178' => 'cru', 'Carub.0006s0806' => 'cru', 'Carub.0006s0807' => 'cru', 'Carub.0006s0808' => 'cru', 'Carub.0008s0501' => 'cru', 'Carub.0008s2379' => 'cru', 'Ca_08655_v3' => 'car', 'Ca_08922_v3' => 'car', 'Ca_08923_v3' => 'car', 'Ca_09119_v3' => 'car', 'Ca_09703_v3' => 'car', 'Ca_09705_v3' => 'car', 'Ca_09835_v3' => 'car', 'Ca_26403_v3' => 'car', 'Ca_30719_v3' => 'car', 'CBR_g17958' => 'cbr', 'CBR_g40516' => 'cbr', 'Cc00_g05350' => 'ccan', 'Cc01_g18690' => 'ccan', 'Cc03_g04830' => 'ccan', 'Cc03_g04850' => 'ccan', 'CDE02G4469' => 'cde', 'CDE06G0883' => 'cde', 'CDE06G1295' => 'cde', 'CDE06G1390' => 'cde', 'CDE07G0584' => 'cde', 'CDE07G1084' => 'cde', 'CDE08G1259' => 'cde', 'Cfa002341' => 'cfa', 'Cfa024337' => 'cfa', 'Ciclev10004749m.g' => 'ccl', 'Ciclev10006127m.g' => 'ccl', 'Ciclev10019720m.g' => 'ccl', 'Ciclev10022652m.g' => 'ccl', 'CiPaw.01G190400' => 'cil', 'CiPaw.01G190500' => 'cil', 'CiPaw.02G116400' => 'cil', 'CiPaw.02G116500' => 'cil', 'CiPaw.04G183000' => 'cil', 'CiPaw.04G183300' => 'cil', 'ClCG05G004610' => 'cla', 'ClCG05G004620' => 'cla', 'ClCG06G006730' => 'cla', 'ClCG06G006740' => 'cla', 'ClCG11G003690' => 'cla', 'COL.COLO4_08276' => 'col', 'COL.COLO4_08277' => 'col', 'COL.COLO4_15787' => 'col', 'COL.COLO4_15789' => 'col', 'Cpa.g.c44815' => 'cpa', 'Cpa.g.sc52.144' => 'cpa', 'Cpa.g.sc58.46' => 'cpa', 'Cpa.g.sc58.47' => 'cpa', 'Cre08.g360900' => 'cre', 'CsaV3_2G013030' => 'csa', 'CsaV3_2G013050' => 'csa', 'CsaV3_2G015620' => 'csa', 'CsaV3_3G012590' => 'csa', 'CsaV3_3G012600' => 'csa', 'CSS0001641' => 'camsi', 'CSS0008310' => 'camsi', 'CSS0013011' => 'camsi', 'CSS0017147' => 'camsi', 'CSS0022970' => 'camsi', 'CSS0025655' => 'camsi', 'CSS0028665' => 'camsi', 'CSS0029117' => 'camsi', 'CSS0032024' => 'camsi', 'CSS0039681' => 'camsi', 'CSS0046516' => 'camsi', 'CSS0050307' => 'camsi', 'DCAR_005871' => 'dca', 'DCAR_007342' => 'dca', 'DCAR_024228' => 'dca', 'DCAR_027277' => 'dca', 'DCAR_030718' => 'dca', 'Dinv20287' => 'din', 'Dinv22461' => 'din', 'Dinv22464' => 'din', 'Dinv29912' => 'din', 'Dinv29913' => 'din', 'Dinv34580' => 'din', 'Dinv34582' => 'din', 'Dinv44632' => 'din', 'Duzib052G0266' => 'dzi', 'Duzib133G0907' => 'dzi', 'Duzib133G1034' => 'dzi', 'Duzib138G0207' => 'dzi', 'Duzib138G0491' => 'dzi', 'Duzib151G0812' => 'dzi', 'Duzib151G1166' => 'dzi', 'Duzib168G0192' => 'dzi', 'Duzib211G0077' => 'dzi', 'Duzib212G0429' => 'dzi', 'Duzib212G0472' => 'dzi', 'ECA233G2617' => 'eca', 'ECA236G4188' => 'eca', 'ECA240G0936' => 'eca', 'ECA240G1129' => 'eca', 'ECA247G0623' => 'eca', 'EL10Ac5g10451' => 'bvu', 'EL10Ac5g10453' => 'bvu', 'EL10Ac5g10894' => 'bvu', 'Eucgr.H00192' => 'egr', 'Eucgr.H00193' => 'egr', 'Eucgr.H00194' => 'egr', 'Eucgr.J01562' => 'egr', 'Eucgr.K03301' => 'egr', 'FAN02G0632' => 'fan', 'FAN05G5378' => 'fan', 'FAN09G3247' => 'fan', 'FAN12G0435' => 'fan', 'FAN12G2426' => 'fan', 'FAN14G1707' => 'fan', 'FAN14G4725' => 'fan', 'FAN15G2071' => 'fan', 'FAN17G3065' => 'fan', 'FAN19G1376' => 'fan', 'FAN20G0354' => 'fan', 'FAN20G2429' => 'fan', 'FAN20G2658' => 'fan', 'FAN24G2343' => 'fan', 'FAN27G2362' => 'fan', 'FAN28G1765' => 'fan', 'FvH4_1g16020' => 'fve', 'FvH4_2g04890' => 'fve', 'FvH4_2g22270' => 'fve', 'FvH4_4g02630' => 'fve', 'FvH4_4g02640' => 'fve', 'FvH4_6g02650' => 'fve', 'Glyma.02G140600' => 'gma', 'Glyma.03G159900' => 'gma', 'Glyma.05G234800' => 'gma', 'Glyma.07G269600' => 'gma', 'Glyma.08G042300' => 'gma', 'Glyma.10G033500' => 'gma', 'Glyma.10G185200' => 'gma', 'Glyma.17G004300' => 'gma', 'Glyma.19G161900' => 'gma', 'Glyma.20G205100' => 'gma', 'Glyma.20G205200' => 'gma', 'Gohir.A01G139101' => 'ghi', 'Gohir.A02G035600' => 'ghi', 'Gohir.A02G117901' => 'ghi', 'Gohir.A07G210100' => 'ghi', 'Gohir.A07G210200' => 'ghi', 'Gohir.A08G061100' => 'ghi', 'Gohir.A09G223000' => 'ghi', 'Gohir.A09G223100' => 'ghi', 'Gohir.A10G113900' => 'ghi', 'Gohir.A10G114000' => 'ghi', 'Gohir.D02G042300' => 'ghi', 'Gohir.D07G216100' => 'ghi', 'Gohir.D07G216200' => 'ghi', 'Gohir.D08G070400' => 'ghi', 'Gohir.D09G225000' => 'ghi', 'Gohir.D09G225100' => 'ghi', 'Gohir.D10G152300' => 'ghi', 'Gohir.D10G153200' => 'ghi', 'Gohir.D11G133701' => 'ghi', 'Gorai.004G074100' => 'gra', 'Gorai.005G046800' => 'gra', 'Gorai.006G246500' => 'gra', 'Gorai.006G246600' => 'gra', 'Gorai.007G142900' => 'gra', 'Gorai.011G171000' => 'gra', 'Gorai.011G171100' => 'gra', 'Gorai.013G104300' => 'gra', 'Gorai.013G104400' => 'gra', 'GSVIVG01000754001' => 'vvi', 'GSVIVG01000756001' => 'vvi', 'GSVIVG01010903001' => 'vvi', 'GSVIVG01017623001' => 'vvi', 'GSVIVG01018113001' => 'vvi', 'GSVIVG01018116001' => 'vvi', 'GSVIVG01018118001' => 'vvi', 'HanXRQChr03g0076211' => 'han', 'HanXRQChr03g0092431' => 'han', 'HanXRQChr03g0092441' => 'han', 'HanXRQChr03g0092591' => 'han', 'HanXRQChr03g0092671' => 'han', 'HanXRQChr03g0092681' => 'han', 'HanXRQChr03g0092691' => 'han', 'HanXRQChr03g0092701' => 'han', 'HanXRQChr03g0092721' => 'han', 'HanXRQChr03g0092731' => 'han', 'HanXRQChr04g0113681' => 'han', 'HanXRQChr10g0281371' => 'han', 'HanXRQChr11g0337141' => 'han', 'HanXRQChr13g0424521' => 'han', 'HanXRQChr13g0424531' => 'han', 'HanXRQChr13g0424541' => 'han', 'HanXRQChr16g0498221' => 'han', 'Haze_04377' => 'cav', 'Haze_11298' => 'cav', 'Haze_24547' => 'cav', 'Haze_24550' => 'cav', 'Haze_26587' => 'cav', 'Hma1.2p1_0650F.1_g195410' => 'hma', 'Hma1.2p1_0893F.1_g233470' => 'hma', 'HPP92_006508' => 'vpl', 'HPP92_024780' => 'vpl', 'Hund02688' => 'sun', 'Hund09380' => 'sun', 'Hund09381' => 'sun', 'Hund09832' => 'sun', 'Hund09833' => 'sun', 'Hund11351' => 'sun', 'Hund11513' => 'sun', 'Lalb_Chr06g0162591' => 'lal', 'Lalb_Chr06g0162601' => 'lal', 'Lalb_Chr06g0169321' => 'lal', 'Lalb_Chr09g0330951' => 'lal', 'Lalb_Chr16g0387631' => 'lal', 'Lalb_Chr21g0306241' => 'lal', 'Lalb_Chr25g0290051' => 'lal', 'Lalb_Chr25g0290061' => 'lal', 'Lalb_Chr25g0290071' => 'lal', 'Lj1g0003876' => 'lja', 'Lj1P1207T36' => 'lonja', 'Lj2C1156G12' => 'lonja', 'Lj3A793G39' => 'lonja', 'Lj3C580G2' => 'lonja', 'Lj3C780G2' => 'lonja', 'Lj3C780T4' => 'lonja', 'Lj3C793G9' => 'lonja', 'Lj4g0012960' => 'lja', 'Lj5g0021252' => 'lja', 'Lj5g0021484' => 'lja', 'Lj5g0024528' => 'lja', 'Lj6A399T12' => 'lonja', 'Lj6A656G65' => 'lonja', 'Lsat_1_v5_gn_3_125500' => 'lsa', 'Lsat_1_v5_gn_3_125540' => 'lsa', 'Lsat_1_v5_gn_5_72701' => 'lsa', 'Lsat_1_v5_gn_8_91560' => 'lsa', 'Lsat_1_v5_gn_9_9640' => 'lsa', 'Manes.01G200600' => 'mes', 'Manes.01G200700' => 'mes', 'Manes.03G168900' => 'mes', 'Manes.03G169000' => 'mes', 'Manes.05G085801' => 'mes', 'Manes.05G086200' => 'mes', 'Manes.15G036700' => 'mes', 'Manes.15G036900' => 'mes', 'Mapoly0004s0172' => 'mpo', 'Mapoly0023s0001' => 'mpo', 'Mapoly0142s0012' => 'mpo', 'MBI01_g32854_MAGBIO' => 'mbi', 'MBI11_g24427_MAGBIO' => 'mbi', 'MBI11_g47319_MAGBIO' => 'mbi', 'MCO01G433' => 'mco', 'MD00G1187800' => 'mdo', 'MD04G1226500' => 'mdo', 'MD05G1203900' => 'mdo', 'MD10G1191100' => 'mdo', 'MD12G1243500' => 'mdo', 'MD13G1207000' => 'mdo', 'MD13G1207100' => 'mdo', 'MD16G1208600' => 'mdo', 'Medtr1g050352' => 'mtr', 'Medtr1g070385' => 'mtr', 'Medtr1g070450' => 'mtr', 'Medtr1g075200' => 'mtr', 'Medtr1g075250' => 'mtr', 'Medtr1g075260' => 'mtr', 'Medtr1g475250' => 'mtr', 'Medtr4g075450' => 'mtr', 'Medtr7g096300' => 'mtr', 'Medtr8g105110' => 'mtr', 'MELO3C006470.2' => 'cme', 'MELO3C006471.2' => 'cme', 'MELO3C020772.2' => 'cme', 'MELO3C026780.2' => 'cme', 'MELO3C026781.2' => 'cme', 'Migut.D00390' => 'egut', 'Migut.G00435' => 'egut', 'Migut.G00436' => 'egut', 'Migut.G00718' => 'egut', 'MSTRG.21891' => 'ama', 'MSTRG.26910' => 'ama', 'MSTRG.4099' => 'ama', 'MSTRG.9925' => 'ama', 'Nitab4.5_0000165g0010' => 'nta', 'Nitab4.5_0000209g0180' => 'nta', 'Nitab4.5_0000244g0440' => 'nta', 'Nitab4.5_0000525g0220' => 'nta', 'Nitab4.5_0001597g0020' => 'nta', 'Nitab4.5_0001878g0040' => 'nta', 'Nitab4.5_0001878g0060' => 'nta', 'Nitab4.5_0002838g0100' => 'nta', 'Nitab4.5_0002838g0120' => 'nta', 'Nitab4.5_0004798g0030' => 'nta', 'Nitab4.5_0005420g0010' => 'nta', 'Nitab4.5_0005507g0010' => 'nta', 'Nitab4.5_0005574g0020' => 'nta', 'Nitab4.5_0005838g0010' => 'nta', 'Nitab4.5_0010580g0020' => 'nta', 'Nn1g02599' => 'nnu', 'Nn1g02608' => 'nnu', 'Nn3g17742' => 'nnu', 'Nn3g19534' => 'nnu', 'Nn3g19535' => 'nnu', 'Oeu008790.1' => 'oeu', 'Oeu008792.1' => 'oeu', 'Oeu032590.1' => 'oeu', 'Oeu035349.1' => 'oeu', 'Oeu049791.1' => 'oeu', 'Os01g0774500' => 'osa', 'Os03g0628800' => 'osa', 'Os03g0798600' => 'osa', 'Os05g0508800' => 'osa', 'Peaxi162Scf00036g02018' => 'pax', 'Peaxi162Scf00578g00032' => 'pax', 'Peaxi162Scf00578g00317' => 'pax', 'Peaxi162Scf00785g00114' => 'pax', 'Peaxi162Scf00813g00119' => 'pax', 'Peaxi162Scf00906g00227' => 'pax', 'PGR004G0875' => 'pgr', 'PGR004G2424' => 'pgr', 'PGR031G1239' => 'pgr', 'PGR031G2474' => 'pgr', 'PGR044G0423' => 'pgr', 'PGSC0003DMG400001128' => 'stu', 'PGSC0003DMG400007336' => 'stu', 'PGSC0003DMG400016318' => 'stu', 'PGSC0003DMG400016319' => 'stu', 'PGSC0003DMG400018074' => 'stu', 'Phvul.001G157700' => 'pvu', 'Phvul.002G148550' => 'pvu', 'Phvul.002G320200' => 'pvu', 'Phvul.003G089200' => 'pvu', 'Phvul.007G126000' => 'pvu', 'Phvul.007G126100' => 'pvu', 'Phvul.007G178000' => 'pvu', 'Phvul.007G178200' => 'pvu', 'Potri.002G043000' => 'ptr', 'Potri.002G043200' => 'ptr', 'Potri.003G123750' => 'ptr', 'Potri.005G055401' => 'ptr', 'Potri.005G219700' => 'ptr', 'Potri.005G220000' => 'ptr', 'Potri.008G161901' => 'ptr', 'Potri.008G162000' => 'ptr', 'Potri.008G162400' => 'ptr', 'Potri.010G076900' => 'ptr', 'Pp3c12_9180' => 'ppa', 'Pp3c13_19770' => 'ppa', 'Pp3c14_22950' => 'ppa', 'Pp3c16_12160' => 'ppa', 'Pp3c27_7820' => 'ppa', 'Pp3c2_3490' => 'ppa', 'Pp3c3_23700' => 'ppa', 'Pp3c3_36520' => 'ppa', 'Pp3c4_15250' => 'ppa', 'PRCOL_00007002' => 'pco', 'Prupe.1G030600' => 'ppe', 'Prupe.1G030700' => 'ppe', 'Prupe.6G345200' => 'ppe', 'Prupe.8G230300' => 'ppe', 'Prupe.8G230500' => 'ppe', 'Psat3g059600' => 'psa', 'Psat5g200920' => 'psa', 'Psat6g056440' => 'psa', 'Psat6g057360' => 'psa', 'Psat6g134120' => 'psa', 'Psat6g134160' => 'psa', 'Psat7g008640' => 'psa', 'Psat7g185240' => 'psa', 'PSO017G1330' => 'pso', 'PSO063G6097' => 'pso', 'PSO170G0835' => 'pso', 'PSO170G2499' => 'pso', 'PSO210G5058' => 'pso', 'PSO210G6154' => 'pso', 'PSO585G0031' => 'pso', 'PSO832G0264' => 'pso', 'PSO832G4288' => 'pso', 'QL03p027355' => 'qlo', 'QL03p027430' => 'qlo', 'QL04p081380' => 'qlo', 'QL06p015642' => 'qlo', 'QL06p015650' => 'qlo', 'QL06p015686' => 'qlo', 'QL12p042927' => 'qlo', 'QL93p1863_0035' => 'qlo', 'RcHm_v2.0_Chr3g0450581' => 'rch', 'RcHm_v2.0_Chr4g0390371' => 'rch', 'RcHm_v2.0_Chr4g0390381' => 'rch', 'RcHm_v2.0_Chr4g0390491' => 'rch', 'RcHm_v2.0_Chr4g0390501' => 'rch', 'RcHm_v2.0_Chr6g0289231' => 'rch', 'Rhsim04G0190400' => 'rsi', 'Rhsim04G0190500' => 'rsi', 'Rhsim04G0190600' => 'rsi', 'Rhsim13G0031400' => 'rsi', 'Rhsim13G0165600' => 'rsi', 'RhsimUnG0114600' => 'rsi', 'RhsimUnG0114700' => 'rsi', 'Sabra02G0034800' => 'sbr', 'Sabra02G0035100' => 'sbr', 'Sabra05G0168600' => 'sbr', 'Sabra05G0168800' => 'sbr', 'Sabra08G0123700' => 'sbr', 'Sabra10G0031900' => 'sbr', 'Sabra13G0039000' => 'sbr', 'SalBow2G0782' => 'sbo', 'SalBow2G1403' => 'sbo', 'SalBow4G0074' => 'sbo', 'SalBow4G2635' => 'sbo', 'SalBow5G3010' => 'sbo', 'Sc05g0000870' => 'sci', 'Sc05g0000890' => 'sci', 'Sc13g0005000' => 'sci', 'Sc13g0005030' => 'sci', 'Sc19g0003790' => 'sci', 'Sc19g0003800' => 'sci', 'Sed0003467' => 'sed', 'Sed0009355' => 'sed', 'Sed0009894' => 'sed', 'Sed0011972' => 'sed', 'Sed0021483' => 'sed', 'Sed0021750' => 'sed', 'Sed0026279' => 'sed', 'SEGI_05312' => 'sgi', 'SEGI_10112' => 'sgi', 'SEGI_15835' => 'sgi', 'SEGI_30386' => 'sgi', 'SEGI_34122' => 'sgi', 'SEGI_35063' => 'sgi', 'SGA_v2.0_scaffold101G29794' => 'sas', 'SGA_v2.0_scaffold1G00573' => 'sas', 'SGA_v2.0_scaffold79G25637' => 'sas', 'SGA_v2.0_scaffold88G27283' => 'sas', 'SGA_v2.0_scaffold88G27285' => 'sas', 'SGA_v2.0_scaffold88G27331' => 'sas', 'SHI09937' => 'shi', 'SMO119G0302' => 'smo', 'SMO137G0231' => 'smo', 'SMO367G1151' => 'smo', 'Solyc02g082000.3' => 'sly', 'Solyc06g031670.3' => 'sly', 'Solyc06g053810.3' => 'sly', 'Solyc07g025457.1' => 'sly', 'Solyc08g059740.1' => 'sly', 'Solyc08g059750.3' => 'sly', 'Solyc09g083370.3' => 'sly', 'Solyc12g038950.3' => 'sly', 'Sopen02g026630' => 'spe', 'Sopen06g018930' => 'spe', 'Sopen06g018940' => 'spe', 'Sopen08g009460' => 'spe', 'Sopen09g032290' => 'spe', 'Sp1g03080' => 'spa', 'Sp1g03090' => 'spa', 'Sp1g05480' => 'spa', 'Sp2g07860' => 'spa', 'Sp2g08430' => 'spa', 'Sp2g08440' => 'spa', 'Sp2g26200' => 'spa', 'Sp4g13170' => 'spa', 'Sp6g33840' => 'spa', 'SpUn1204_0010' => 'spa', 'TAR365G0908' => 'tar', 'TAR381G1270' => 'tar', 'TAR381G1651' => 'tar', 'TAR625G1131' => 'tar', 'TAR633G0962' => 'tar', 'TAR633G1729' => 'tar', 'TAR633G1864' => 'tar', 'TAR636G0221' => 'tar', 'TAR636G0314' => 'tar', 'TAR636G3202' => 'tar', 'THA.LOC104800805' => 'tha', 'THA.LOC104801096' => 'tha', 'THA.LOC104801555' => 'tha', 'THA.LOC104808491' => 'tha', 'THA.LOC104808595' => 'tha', 'THA.LOC104815985' => 'tha', 'THA.LOC104822250' => 'tha', 'THA.LOC104826071' => 'tha', 'Thecc.01G265200' => 'tca', 'Thecc.01G265300' => 'tca', 'Thecc.01G265700' => 'tca', 'Thecc.03G109100' => 'tca', 'Thecc.04G245900' => 'tca', 'Thecc.04G246000' => 'tca', 'Thhalv10003334m.g' => 'esa', 'Thhalv10005508m.g' => 'esa', 'Thhalv10005643m.g' => 'esa', 'Thhalv10007316m.g' => 'esa', 'Thhalv10009006m.g' => 'esa', 'Thhalv10009309m.g' => 'esa', 'Thhalv10014917m.g' => 'esa', 'Thhalv10014919m.g' => 'esa', 'Thhalv10015393m.g' => 'esa', 'Thhalv10016515m.g' => 'esa', 'Thhalv10029242m.g' => 'esa', 'TPR.G16654' => 'tpr', 'TPR.G20589' => 'tpr', 'TPR.G23029' => 'tpr', 'TPR.G27731' => 'tpr', 'TPR.G28889' => 'tpr', 'TPR.G28899' => 'tpr', 'TPR.G30846' => 'tpr', 'TPR.G5452' => 'tpr', 'TPR.G5713' => 'tpr', 'TPR.G9046' => 'tpr', 'TPR.G9061' => 'tpr', 'TWI09G1075' => 'twi', 'TWI12G0806' => 'twi', 'TWI18G0108' => 'twi', 'TWI53G1361' => 'twi', 'TWI73G0185' => 'twi', 'TWI73G0427' => 'twi', 'unitig_37.g12001' => 'ugi', 'unitig_747.g21660' => 'ugi', 'unitig_748.g7232' => 'ugi', 'unitig_748.g7315' => 'ugi', 'unitig_85.g27262' => 'ugi', 'unitig_92.g28220' => 'ugi', 'vmacro02632' => 'vma', 'vmacro08410' => 'vma', 'vmacro08411' => 'vma', 'vmacro15407' => 'vma', 'VMungo0251G3619' => 'vmu', 'VMungo0720G1204' => 'vmu', 'VMungo0720G1918' => 'vmu', 'VMungo0720G2387' => 'vmu', 'VMungo0720G2961' => 'vmu', 'VMungo1215G2154' => 'vmu', 'VMungo1383G2411' => 'vmu', 'Zm00001eb051130' => 'zma', 'Zm00001eb116830' => 'zma', 'Zm00001eb116850' => 'zma', 'Zm00001eb151740' => 'zma', 'Zm00001eb292360' => 'zma', 'Zm00001eb301640' => 'zma' ), 'gf_id' => 'HOM05D000856', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000856' ), 'data_identifier' => 'HOM05D000856', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000856', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p00010' => 'bna', 'A03p04160' => 'bna', 'A03p17160' => 'bna', 'A04p23370' => 'bna', 'A05p14860' => 'bna', 'A08p37020' => 'bna', 'A09p08050' => 'bna', 'A09p66800' => 'bna', 'A09p67940' => 'bna', 'A10p02680' => 'bna', 'A10p05320' => 'bna', 'Aa31LG1G20560' => 'aar', 'Aa31LG1G20610' => 'aar', 'Aa31LG1G7810' => 'aar', 'Aa31LG5G3590' => 'aar', 'Aa31LG5G6140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3819' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4683' => 'aag', 'Actinidia04480' => 'ach', 'Actinidia05466' => 'ach', 'Actinidia08445' => 'ach', 'Actinidia21170' => 'ach', 'Actinidia24812' => 'ach', 'Actinidia24951' => 'ach', 'Actinidia40088' => 'ach', 'Ah.02g111660' => 'amhyb', 'Ah.11g048900' => 'amhyb', 'Ah.11g049910' => 'amhyb', 'AL1G13870' => 'aly', 'AL1G13880' => 'aly', 'AL1G16760' => 'aly', 'AL390U10020' => 'aly', 'AL4G25520' => 'aly', 'AL6G19890' => 'aly', 'AL6G19900' => 'aly', 'AL6G19910' => 'aly', 'AL8G40100' => 'aly', 'Aqoxy2G03562' => 'aox', 'Aqoxy5G00316' => 'aox', 'Aqoxy5G00926' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1628KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1H403S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2FU6SJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.882I6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8YRY2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YN1SN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AF70II' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZA8L1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F916KL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHRD8H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KTZ8QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S22EMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8M29T' => 'arhy', 'AT1G04270' => 'ath', 'AT1G04280' => 'ath', 'AT1G06750' => 'ath', 'AT1G33850' => 'ath', 'AT2G30630' => 'ath', 'AT5G09490' => 'ath', 'AT5G09500' => 'ath', 'AT5G09510' => 'ath', 'AT5G43640' => 'ath', 'AT5G63070' => 'ath', 'ATR0605G315' => 'atr', 'Atru.chr11.175' => 'acertr', 'Atru.chr11.653' => 'acertr', 'Atru.chr3.1616' => 'acertr', 'Atru.chr4.2230' => 'acertr', 'Atru.chr4.2232' => 'acertr', 'Atru.chr5.1598' => 'acertr', 'Atru.chr5.1600' => 'acertr', 'Atru.chr5.2188' => 'acertr', 'AUR62008326' => 'cqu', 'AUR62011922' => 'cqu', 'AUR62011924' => 'cqu', 'AUR62021771' => 'cqu', 'AUR62032237' => 'cqu', 'AUR62032240' => 'cqu', 'BcaB01g05572' => 'bca', 'BcaB02g10337' => 'bca', 'BcaB04g19944' => 'bca', 'BcaB05g21548' => 'bca', 'BcaB05g21549' => 'bca', 'BcaB05g23227' => 'bca', 'BcaB06g26256' => 'bca', 'BcaB06g26257' => 'bca', 'BcaB06g28379' => 'bca', 'BcaC02g11159' => 'bca', 'BcaC03g13258' => 'bca', 'BcaC03g13259' => 'bca', 'BcaC05g24456' => 'bca', 'BcaC05g24457' => 'bca', 'BcaC07g36922' => 'bca', 'BcaC07g36923' => 'bca', 'BcaC07g42050' => 'bca', 'BcaC07g42176' => 'bca', 'BcaC07g42195' => 'bca', 'BcaC07g42196' => 'bca', 'BcaNung06674' => 'bca', 'BolC2t06351H' => 'bol', 'BolC2t06352H' => 'bol', 'BolC3t12993H' => 'bol', 'BolC4t23525H' => 'bol', 'BolC4t27475H' => 'bol', 'BolC5t29025H' => 'bol', 'BolC5t29026H' => 'bol', 'BolC8t46898H' => 'bol', 'BolC8t46899H' => 'bol', 'BolC8t52630H' => 'bol', 'BolC8t52765H' => 'bol', 'BolC9t53824H' => 'bol', 'BraA03t09760Z' => 'bra', 'BraA03t10990Z' => 'bra', 'BraA05t20413Z' => 'bra', 'BraA08t35602Z' => 'bra', 'BraA09t36458Z' => 'bra', 'BraA09t42018Z' => 'bra', 'BraA09t42129Z' => 'bra', 'BraA10t42536Z' => 'bra', 'BraA10t42537Z' => 'bra', 'C01p10690' => 'bna', 'C02p03890' => 'bna', 'C02p03900' => 'bna', 'C03p04620' => 'bna', 'C04p19870' => 'bna', 'C04p59670' => 'bna', 'C05p02460' => 'bna', 'C05p02470' => 'bna', 'C08p00980' => 'bna', 'C08p00990' => 'bna', 'C08p51030' => 'bna', 'C08p52360' => 'bna', 'C09p09120' => 'bna', 'CAN.G19.15' => 'can', 'CAN.G251.10' => 'can', 'CAN.G251.9' => 'can', 'CAN.G398.24' => 'can', 'CAN.G410.32' => 'can', 'CAN.G881.2' => 'can', 'CANSAT01G3025' => 'cansat', 'CANSAT78G1211' => 'cansat', 'CANSAT78G1218' => 'cansat', 'CANSAT78G1521' => 'cansat', 'CANSAT78G1670' => 'cansat', 'CARHR003600' => 'chi', 'CARHR003610' => 'chi', 'CARHR006290' => 'chi', 'CARHR006430' => 'chi', 'CARHR124110' => 'chi', 'CARHR203870' => 'chi', 'CARHR203880' => 'chi', 'CARHR203890' => 'chi', 'CARHR276880' => 'chi', 'Carub.0001s0346' => 'cru', 'Carub.0001s0347' => 'cru', 'Carub.0001s0607' => 'cru', 'Carub.0003s2768' => 'cru', 'Carub.0003s2769' => 'cru', 'Carub.0004s1178' => 'cru', 'Carub.0006s0806' => 'cru', 'Carub.0006s0807' => 'cru', 'Carub.0006s0808' => 'cru', 'Carub.0008s0501' => 'cru', 'Carub.0008s2379' => 'cru', 'Ca_08655_v3' => 'car', 'Ca_08922_v3' => 'car', 'Ca_08923_v3' => 'car', 'Ca_09119_v3' => 'car', 'Ca_09703_v3' => 'car', 'Ca_09705_v3' => 'car', 'Ca_09835_v3' => 'car', 'Ca_26403_v3' => 'car', 'Ca_30719_v3' => 'car', 'CBR_g17958' => 'cbr', 'CBR_g40516' => 'cbr', 'Cc00_g05350' => 'ccan', 'Cc01_g18690' => 'ccan', 'Cc03_g04830' => 'ccan', 'Cc03_g04850' => 'ccan', 'CDE02G4469' => 'cde', 'CDE06G0883' => 'cde', 'CDE06G1295' => 'cde', 'CDE06G1390' => 'cde', 'CDE07G0584' => 'cde', 'CDE07G1084' => 'cde', 'CDE08G1259' => 'cde', 'Cfa002341' => 'cfa', 'Cfa024337' => 'cfa', 'Ciclev10004749m.g' => 'ccl', 'Ciclev10006127m.g' => 'ccl', 'Ciclev10019720m.g' => 'ccl', 'Ciclev10022652m.g' => 'ccl', 'CiPaw.01G190400' => 'cil', 'CiPaw.01G190500' => 'cil', 'CiPaw.02G116400' => 'cil', 'CiPaw.02G116500' => 'cil', 'CiPaw.04G183000' => 'cil', 'CiPaw.04G183300' => 'cil', 'ClCG05G004610' => 'cla', 'ClCG05G004620' => 'cla', 'ClCG06G006730' => 'cla', 'ClCG06G006740' => 'cla', 'ClCG11G003690' => 'cla', 'COL.COLO4_08276' => 'col', 'COL.COLO4_08277' => 'col', 'COL.COLO4_15787' => 'col', 'COL.COLO4_15789' => 'col', 'Cpa.g.c44815' => 'cpa', 'Cpa.g.sc52.144' => 'cpa', 'Cpa.g.sc58.46' => 'cpa', 'Cpa.g.sc58.47' => 'cpa', 'Cre08.g360900' => 'cre', 'CsaV3_2G013030' => 'csa', 'CsaV3_2G013050' => 'csa', 'CsaV3_2G015620' => 'csa', 'CsaV3_3G012590' => 'csa', 'CsaV3_3G012600' => 'csa', 'CSS0001641' => 'camsi', 'CSS0008310' => 'camsi', 'CSS0013011' => 'camsi', 'CSS0017147' => 'camsi', 'CSS0022970' => 'camsi', 'CSS0025655' => 'camsi', 'CSS0028665' => 'camsi', 'CSS0029117' => 'camsi', 'CSS0032024' => 'camsi', 'CSS0039681' => 'camsi', 'CSS0046516' => 'camsi', 'CSS0050307' => 'camsi', 'DCAR_005871' => 'dca', 'DCAR_007342' => 'dca', 'DCAR_024228' => 'dca', 'DCAR_027277' => 'dca', 'DCAR_030718' => 'dca', 'Dinv20287' => 'din', 'Dinv22461' => 'din', 'Dinv22464' => 'din', 'Dinv29912' => 'din', 'Dinv29913' => 'din', 'Dinv34580' => 'din', 'Dinv34582' => 'din', 'Dinv44632' => 'din', 'Duzib052G0266' => 'dzi', 'Duzib133G0907' => 'dzi', 'Duzib133G1034' => 'dzi', 'Duzib138G0207' => 'dzi', 'Duzib138G0491' => 'dzi', 'Duzib151G0812' => 'dzi', 'Duzib151G1166' => 'dzi', 'Duzib168G0192' => 'dzi', 'Duzib211G0077' => 'dzi', 'Duzib212G0429' => 'dzi', 'Duzib212G0472' => 'dzi', 'ECA233G2617' => 'eca', 'ECA236G4188' => 'eca', 'ECA240G0936' => 'eca', 'ECA240G1129' => 'eca', 'ECA247G0623' => 'eca', 'EL10Ac5g10451' => 'bvu', 'EL10Ac5g10453' => 'bvu', 'EL10Ac5g10894' => 'bvu', 'Eucgr.H00192' => 'egr', 'Eucgr.H00193' => 'egr', 'Eucgr.H00194' => 'egr', 'Eucgr.J01562' => 'egr', 'Eucgr.K03301' => 'egr', 'FAN02G0632' => 'fan', 'FAN05G5378' => 'fan', 'FAN09G3247' => 'fan', 'FAN12G0435' => 'fan', 'FAN12G2426' => 'fan', 'FAN14G1707' => 'fan', 'FAN14G4725' => 'fan', 'FAN15G2071' => 'fan', 'FAN17G3065' => 'fan', 'FAN19G1376' => 'fan', 'FAN20G0354' => 'fan', 'FAN20G2429' => 'fan', 'FAN20G2658' => 'fan', 'FAN24G2343' => 'fan', 'FAN27G2362' => 'fan', 'FAN28G1765' => 'fan', 'FvH4_1g16020' => 'fve', 'FvH4_2g04890' => 'fve', 'FvH4_2g22270' => 'fve', 'FvH4_4g02630' => 'fve', 'FvH4_4g02640' => 'fve', 'FvH4_6g02650' => 'fve', 'Glyma.02G140600' => 'gma', 'Glyma.03G159900' => 'gma', 'Glyma.05G234800' => 'gma', 'Glyma.07G269600' => 'gma', 'Glyma.08G042300' => 'gma', 'Glyma.10G033500' => 'gma', 'Glyma.10G185200' => 'gma', 'Glyma.17G004300' => 'gma', 'Glyma.19G161900' => 'gma', 'Glyma.20G205100' => 'gma', 'Glyma.20G205200' => 'gma', 'Gohir.A01G139101' => 'ghi', 'Gohir.A02G035600' => 'ghi', 'Gohir.A02G117901' => 'ghi', 'Gohir.A07G210100' => 'ghi', 'Gohir.A07G210200' => 'ghi', 'Gohir.A08G061100' => 'ghi', 'Gohir.A09G223000' => 'ghi', 'Gohir.A09G223100' => 'ghi', 'Gohir.A10G113900' => 'ghi', 'Gohir.A10G114000' => 'ghi', 'Gohir.D02G042300' => 'ghi', 'Gohir.D07G216100' => 'ghi', 'Gohir.D07G216200' => 'ghi', 'Gohir.D08G070400' => 'ghi', 'Gohir.D09G225000' => 'ghi', 'Gohir.D09G225100' => 'ghi', 'Gohir.D10G152300' => 'ghi', 'Gohir.D10G153200' => 'ghi', 'Gohir.D11G133701' => 'ghi', 'Gorai.004G074100' => 'gra', 'Gorai.005G046800' => 'gra', 'Gorai.006G246500' => 'gra', 'Gorai.006G246600' => 'gra', 'Gorai.007G142900' => 'gra', 'Gorai.011G171000' => 'gra', 'Gorai.011G171100' => 'gra', 'Gorai.013G104300' => 'gra', 'Gorai.013G104400' => 'gra', 'GSVIVG01000754001' => 'vvi', 'GSVIVG01000756001' => 'vvi', 'GSVIVG01010903001' => 'vvi', 'GSVIVG01017623001' => 'vvi', 'GSVIVG01018113001' => 'vvi', 'GSVIVG01018116001' => 'vvi', 'GSVIVG01018118001' => 'vvi', 'HanXRQChr03g0076211' => 'han', 'HanXRQChr03g0092431' => 'han', 'HanXRQChr03g0092441' => 'han', 'HanXRQChr03g0092591' => 'han', 'HanXRQChr03g0092671' => 'han', 'HanXRQChr03g0092681' => 'han', 'HanXRQChr03g0092691' => 'han', 'HanXRQChr03g0092701' => 'han', 'HanXRQChr03g0092721' => 'han', 'HanXRQChr03g0092731' => 'han', 'HanXRQChr04g0113681' => 'han', 'HanXRQChr10g0281371' => 'han', 'HanXRQChr11g0337141' => 'han', 'HanXRQChr13g0424521' => 'han', 'HanXRQChr13g0424531' => 'han', 'HanXRQChr13g0424541' => 'han', 'HanXRQChr16g0498221' => 'han', 'Haze_04377' => 'cav', 'Haze_11298' => 'cav', 'Haze_24547' => 'cav', 'Haze_24550' => 'cav', 'Haze_26587' => 'cav', 'Hma1.2p1_0650F.1_g195410' => 'hma', 'Hma1.2p1_0893F.1_g233470' => 'hma', 'HPP92_006508' => 'vpl', 'HPP92_024780' => 'vpl', 'Hund02688' => 'sun', 'Hund09380' => 'sun', 'Hund09381' => 'sun', 'Hund09832' => 'sun', 'Hund09833' => 'sun', 'Hund11351' => 'sun', 'Hund11513' => 'sun', 'Lalb_Chr06g0162591' => 'lal', 'Lalb_Chr06g0162601' => 'lal', 'Lalb_Chr06g0169321' => 'lal', 'Lalb_Chr09g0330951' => 'lal', 'Lalb_Chr16g0387631' => 'lal', 'Lalb_Chr21g0306241' => 'lal', 'Lalb_Chr25g0290051' => 'lal', 'Lalb_Chr25g0290061' => 'lal', 'Lalb_Chr25g0290071' => 'lal', 'Lj1g0003876' => 'lja', 'Lj1P1207T36' => 'lonja', 'Lj2C1156G12' => 'lonja', 'Lj3A793G39' => 'lonja', 'Lj3C580G2' => 'lonja', 'Lj3C780G2' => 'lonja', 'Lj3C780T4' => 'lonja', 'Lj3C793G9' => 'lonja', 'Lj4g0012960' => 'lja', 'Lj5g0021252' => 'lja', 'Lj5g0021484' => 'lja', 'Lj5g0024528' => 'lja', 'Lj6A399T12' => 'lonja', 'Lj6A656G65' => 'lonja', 'Lsat_1_v5_gn_3_125500' => 'lsa', 'Lsat_1_v5_gn_3_125540' => 'lsa', 'Lsat_1_v5_gn_5_72701' => 'lsa', 'Lsat_1_v5_gn_8_91560' => 'lsa', 'Lsat_1_v5_gn_9_9640' => 'lsa', 'Manes.01G200600' => 'mes', 'Manes.01G200700' => 'mes', 'Manes.03G168900' => 'mes', 'Manes.03G169000' => 'mes', 'Manes.05G085801' => 'mes', 'Manes.05G086200' => 'mes', 'Manes.15G036700' => 'mes', 'Manes.15G036900' => 'mes', 'Mapoly0004s0172' => 'mpo', 'Mapoly0023s0001' => 'mpo', 'Mapoly0142s0012' => 'mpo', 'MBI01_g32854_MAGBIO' => 'mbi', 'MBI11_g24427_MAGBIO' => 'mbi', 'MBI11_g47319_MAGBIO' => 'mbi', 'MCO01G433' => 'mco', 'MD00G1187800' => 'mdo', 'MD04G1226500' => 'mdo', 'MD05G1203900' => 'mdo', 'MD10G1191100' => 'mdo', 'MD12G1243500' => 'mdo', 'MD13G1207000' => 'mdo', 'MD13G1207100' => 'mdo', 'MD16G1208600' => 'mdo', 'Medtr1g050352' => 'mtr', 'Medtr1g070385' => 'mtr', 'Medtr1g070450' => 'mtr', 'Medtr1g075200' => 'mtr', 'Medtr1g075250' => 'mtr', 'Medtr1g075260' => 'mtr', 'Medtr1g475250' => 'mtr', 'Medtr4g075450' => 'mtr', 'Medtr7g096300' => 'mtr', 'Medtr8g105110' => 'mtr', 'MELO3C006470.2' => 'cme', 'MELO3C006471.2' => 'cme', 'MELO3C020772.2' => 'cme', 'MELO3C026780.2' => 'cme', 'MELO3C026781.2' => 'cme', 'Migut.D00390' => 'egut', 'Migut.G00435' => 'egut', 'Migut.G00436' => 'egut', 'Migut.G00718' => 'egut', 'MSTRG.21891' => 'ama', 'MSTRG.26910' => 'ama', 'MSTRG.4099' => 'ama', 'MSTRG.9925' => 'ama', 'Nitab4.5_0000165g0010' => 'nta', 'Nitab4.5_0000209g0180' => 'nta', 'Nitab4.5_0000244g0440' => 'nta', 'Nitab4.5_0000525g0220' => 'nta', 'Nitab4.5_0001597g0020' => 'nta', 'Nitab4.5_0001878g0040' => 'nta', 'Nitab4.5_0001878g0060' => 'nta', 'Nitab4.5_0002838g0100' => 'nta', 'Nitab4.5_0002838g0120' => 'nta', 'Nitab4.5_0004798g0030' => 'nta', 'Nitab4.5_0005420g0010' => 'nta', 'Nitab4.5_0005507g0010' => 'nta', 'Nitab4.5_0005574g0020' => 'nta', 'Nitab4.5_0005838g0010' => 'nta', 'Nitab4.5_0010580g0020' => 'nta', 'Nn1g02599' => 'nnu', 'Nn1g02608' => 'nnu', 'Nn3g17742' => 'nnu', 'Nn3g19534' => 'nnu', 'Nn3g19535' => 'nnu', 'Oeu008790.1' => 'oeu', 'Oeu008792.1' => 'oeu', 'Oeu032590.1' => 'oeu', 'Oeu035349.1' => 'oeu', 'Oeu049791.1' => 'oeu', 'Os01g0774500' => 'osa', 'Os03g0628800' => 'osa', 'Os03g0798600' => 'osa', 'Os05g0508800' => 'osa', 'Peaxi162Scf00036g02018' => 'pax', 'Peaxi162Scf00578g00032' => 'pax', 'Peaxi162Scf00578g00317' => 'pax', 'Peaxi162Scf00785g00114' => 'pax', 'Peaxi162Scf00813g00119' => 'pax', 'Peaxi162Scf00906g00227' => 'pax', 'PGR004G0875' => 'pgr', 'PGR004G2424' => 'pgr', 'PGR031G1239' => 'pgr', 'PGR031G2474' => 'pgr', 'PGR044G0423' => 'pgr', 'PGSC0003DMG400001128' => 'stu', 'PGSC0003DMG400007336' => 'stu', 'PGSC0003DMG400016318' => 'stu', 'PGSC0003DMG400016319' => 'stu', 'PGSC0003DMG400018074' => 'stu', 'Phvul.001G157700' => 'pvu', 'Phvul.002G148550' => 'pvu', 'Phvul.002G320200' => 'pvu', 'Phvul.003G089200' => 'pvu', 'Phvul.007G126000' => 'pvu', 'Phvul.007G126100' => 'pvu', 'Phvul.007G178000' => 'pvu', 'Phvul.007G178200' => 'pvu', 'Potri.002G043000' => 'ptr', 'Potri.002G043200' => 'ptr', 'Potri.003G123750' => 'ptr', 'Potri.005G055401' => 'ptr', 'Potri.005G219700' => 'ptr', 'Potri.005G220000' => 'ptr', 'Potri.008G161901' => 'ptr', 'Potri.008G162000' => 'ptr', 'Potri.008G162400' => 'ptr', 'Potri.010G076900' => 'ptr', 'Pp3c12_9180' => 'ppa', 'Pp3c13_19770' => 'ppa', 'Pp3c14_22950' => 'ppa', 'Pp3c16_12160' => 'ppa', 'Pp3c27_7820' => 'ppa', 'Pp3c2_3490' => 'ppa', 'Pp3c3_23700' => 'ppa', 'Pp3c3_36520' => 'ppa', 'Pp3c4_15250' => 'ppa', 'PRCOL_00007002' => 'pco', 'Prupe.1G030600' => 'ppe', 'Prupe.1G030700' => 'ppe', 'Prupe.6G345200' => 'ppe', 'Prupe.8G230300' => 'ppe', 'Prupe.8G230500' => 'ppe', 'Psat3g059600' => 'psa', 'Psat5g200920' => 'psa', 'Psat6g056440' => 'psa', 'Psat6g057360' => 'psa', 'Psat6g134120' => 'psa', 'Psat6g134160' => 'psa', 'Psat7g008640' => 'psa', 'Psat7g185240' => 'psa', 'PSO017G1330' => 'pso', 'PSO063G6097' => 'pso', 'PSO170G0835' => 'pso', 'PSO170G2499' => 'pso', 'PSO210G5058' => 'pso', 'PSO210G6154' => 'pso', 'PSO585G0031' => 'pso', 'PSO832G0264' => 'pso', 'PSO832G4288' => 'pso', 'QL03p027355' => 'qlo', 'QL03p027430' => 'qlo', 'QL04p081380' => 'qlo', 'QL06p015642' => 'qlo', 'QL06p015650' => 'qlo', 'QL06p015686' => 'qlo', 'QL12p042927' => 'qlo', 'QL93p1863_0035' => 'qlo', 'RcHm_v2.0_Chr3g0450581' => 'rch', 'RcHm_v2.0_Chr4g0390371' => 'rch', 'RcHm_v2.0_Chr4g0390381' => 'rch', 'RcHm_v2.0_Chr4g0390491' => 'rch', 'RcHm_v2.0_Chr4g0390501' => 'rch', 'RcHm_v2.0_Chr6g0289231' => 'rch', 'Rhsim04G0190400' => 'rsi', 'Rhsim04G0190500' => 'rsi', 'Rhsim04G0190600' => 'rsi', 'Rhsim13G0031400' => 'rsi', 'Rhsim13G0165600' => 'rsi', 'RhsimUnG0114600' => 'rsi', 'RhsimUnG0114700' => 'rsi', 'Sabra02G0034800' => 'sbr', 'Sabra02G0035100' => 'sbr', 'Sabra05G0168600' => 'sbr', 'Sabra05G0168800' => 'sbr', 'Sabra08G0123700' => 'sbr', 'Sabra10G0031900' => 'sbr', 'Sabra13G0039000' => 'sbr', 'SalBow2G0782' => 'sbo', 'SalBow2G1403' => 'sbo', 'SalBow4G0074' => 'sbo', 'SalBow4G2635' => 'sbo', 'SalBow5G3010' => 'sbo', 'Sc05g0000870' => 'sci', 'Sc05g0000890' => 'sci', 'Sc13g0005000' => 'sci', 'Sc13g0005030' => 'sci', 'Sc19g0003790' => 'sci', 'Sc19g0003800' => 'sci', 'Sed0003467' => 'sed', 'Sed0009355' => 'sed', 'Sed0009894' => 'sed', 'Sed0011972' => 'sed', 'Sed0021483' => 'sed', 'Sed0021750' => 'sed', 'Sed0026279' => 'sed', 'SEGI_05312' => 'sgi', 'SEGI_10112' => 'sgi', 'SEGI_15835' => 'sgi', 'SEGI_30386' => 'sgi', 'SEGI_34122' => 'sgi', 'SEGI_35063' => 'sgi', 'SGA_v2.0_scaffold101G29794' => 'sas', 'SGA_v2.0_scaffold1G00573' => 'sas', 'SGA_v2.0_scaffold79G25637' => 'sas', 'SGA_v2.0_scaffold88G27283' => 'sas', 'SGA_v2.0_scaffold88G27285' => 'sas', 'SGA_v2.0_scaffold88G27331' => 'sas', 'SHI09937' => 'shi', 'SMO119G0302' => 'smo', 'SMO137G0231' => 'smo', 'SMO367G1151' => 'smo', 'Solyc02g082000.3' => 'sly', 'Solyc06g031670.3' => 'sly', 'Solyc06g053810.3' => 'sly', 'Solyc07g025457.1' => 'sly', 'Solyc08g059740.1' => 'sly', 'Solyc08g059750.3' => 'sly', 'Solyc09g083370.3' => 'sly', 'Solyc12g038950.3' => 'sly', 'Sopen02g026630' => 'spe', 'Sopen06g018930' => 'spe', 'Sopen06g018940' => 'spe', 'Sopen08g009460' => 'spe', 'Sopen09g032290' => 'spe', 'Sp1g03080' => 'spa', 'Sp1g03090' => 'spa', 'Sp1g05480' => 'spa', 'Sp2g07860' => 'spa', 'Sp2g08430' => 'spa', 'Sp2g08440' => 'spa', 'Sp2g26200' => 'spa', 'Sp4g13170' => 'spa', 'Sp6g33840' => 'spa', 'SpUn1204_0010' => 'spa', 'TAR365G0908' => 'tar', 'TAR381G1270' => 'tar', 'TAR381G1651' => 'tar', 'TAR625G1131' => 'tar', 'TAR633G0962' => 'tar', 'TAR633G1729' => 'tar', 'TAR633G1864' => 'tar', 'TAR636G0221' => 'tar', 'TAR636G0314' => 'tar', 'TAR636G3202' => 'tar', 'THA.LOC104800805' => 'tha', 'THA.LOC104801096' => 'tha', 'THA.LOC104801555' => 'tha', 'THA.LOC104808491' => 'tha', 'THA.LOC104808595' => 'tha', 'THA.LOC104815985' => 'tha', 'THA.LOC104822250' => 'tha', 'THA.LOC104826071' => 'tha', 'Thecc.01G265200' => 'tca', 'Thecc.01G265300' => 'tca', 'Thecc.01G265700' => 'tca', 'Thecc.03G109100' => 'tca', 'Thecc.04G245900' => 'tca', 'Thecc.04G246000' => 'tca', 'Thhalv10003334m.g' => 'esa', 'Thhalv10005508m.g' => 'esa', 'Thhalv10005643m.g' => 'esa', 'Thhalv10007316m.g' => 'esa', 'Thhalv10009006m.g' => 'esa', 'Thhalv10009309m.g' => 'esa', 'Thhalv10014917m.g' => 'esa', 'Thhalv10014919m.g' => 'esa', 'Thhalv10015393m.g' => 'esa', 'Thhalv10016515m.g' => 'esa', 'Thhalv10029242m.g' => 'esa', 'TPR.G16654' => 'tpr', 'TPR.G20589' => 'tpr', 'TPR.G23029' => 'tpr', 'TPR.G27731' => 'tpr', 'TPR.G28889' => 'tpr', 'TPR.G28899' => 'tpr', 'TPR.G30846' => 'tpr', 'TPR.G5452' => 'tpr', 'TPR.G5713' => 'tpr', 'TPR.G9046' => 'tpr', 'TPR.G9061' => 'tpr', 'TWI09G1075' => 'twi', 'TWI12G0806' => 'twi', 'TWI18G0108' => 'twi', 'TWI53G1361' => 'twi', 'TWI73G0185' => 'twi', 'TWI73G0427' => 'twi', 'unitig_37.g12001' => 'ugi', 'unitig_747.g21660' => 'ugi', 'unitig_748.g7232' => 'ugi', 'unitig_748.g7315' => 'ugi', 'unitig_85.g27262' => 'ugi', 'unitig_92.g28220' => 'ugi', 'vmacro02632' => 'vma', 'vmacro08410' => 'vma', 'vmacro08411' => 'vma', 'vmacro15407' => 'vma', 'VMungo0251G3619' => 'vmu', 'VMungo0720G1204' => 'vmu', 'VMungo0720G1918' => 'vmu', 'VMungo0720G2387' => 'vmu', 'VMungo0720G2961' => 'vmu', 'VMungo1215G2154' => 'vmu', 'VMungo1383G2411' => 'vmu', 'Zm00001eb051130' => 'zma', 'Zm00001eb116830' => 'zma', 'Zm00001eb116850' => 'zma', 'Zm00001eb151740' => 'zma', 'Zm00001eb292360' => 'zma', 'Zm00001eb301640' => 'zma' ) $gf_id = 'HOM05D000856' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000856' ) $data_identifier = 'HOM05D000856' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 13, 'ath' => (int) 10, 'atr' => (int) 1, 'acertr' => (int) 8, 'cqu' => (int) 6, 'bca' => (int) 21, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 11, 'car' => (int) 9, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 8, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 5, 'fan' => (int) 16, 'fve' => (int) 6, 'gma' => (int) 11, 'ghi' => (int) 19, 'gra' => (int) 9, 'vvi' => (int) 7, 'han' => (int) 17, 'cav' => (int) 5, 'hma' => (int) 2, 'vpl' => (int) 2, 'sun' => (int) 7, 'lal' => (int) 9, 'lja' => (int) 5, 'lonja' => (int) 9, 'lsa' => (int) 5, 'mes' => (int) 8, 'mpo' => (int) 3, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 10, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 15, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 9, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 9, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 6, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 5, 'spa' => (int) 10, 'tar' => (int) 10, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 11, 'tpr' => (int) 11, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 4, 'vmu' => (int) 7, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb301640' $species_info = array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ) $local_species = 'pax' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000856', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p00010' => 'bna', 'A03p04160' => 'bna', 'A03p17160' => 'bna', 'A04p23370' => 'bna', 'A05p14860' => 'bna', 'A08p37020' => 'bna', 'A09p08050' => 'bna', 'A09p66800' => 'bna', 'A09p67940' => 'bna', 'A10p02680' => 'bna', 'A10p05320' => 'bna', 'Aa31LG1G20560' => 'aar', 'Aa31LG1G20610' => 'aar', 'Aa31LG1G7810' => 'aar', 'Aa31LG5G3590' => 'aar', 'Aa31LG5G6140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3819' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4683' => 'aag', 'Actinidia04480' => 'ach', 'Actinidia05466' => 'ach', 'Actinidia08445' => 'ach', 'Actinidia21170' => 'ach', 'Actinidia24812' => 'ach', 'Actinidia24951' => 'ach', 'Actinidia40088' => 'ach', 'Ah.02g111660' => 'amhyb', 'Ah.11g048900' => 'amhyb', 'Ah.11g049910' => 'amhyb', 'AL1G13870' => 'aly', 'AL1G13880' => 'aly', 'AL1G16760' => 'aly', 'AL390U10020' => 'aly', 'AL4G25520' => 'aly', 'AL6G19890' => 'aly', 'AL6G19900' => 'aly', 'AL6G19910' => 'aly', 'AL8G40100' => 'aly', 'Aqoxy2G03562' => 'aox', 'Aqoxy5G00316' => 'aox', 'Aqoxy5G00926' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1628KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1H403S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2FU6SJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.882I6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8YRY2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YN1SN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AF70II' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZA8L1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F916KL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHRD8H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KTZ8QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S22EMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8M29T' => 'arhy', 'AT1G04270' => 'ath', 'AT1G04280' => 'ath', 'AT1G06750' => 'ath', 'AT1G33850' => 'ath', 'AT2G30630' => 'ath', 'AT5G09490' => 'ath', 'AT5G09500' => 'ath', 'AT5G09510' => 'ath', 'AT5G43640' => 'ath', 'AT5G63070' => 'ath', 'ATR0605G315' => 'atr', 'Atru.chr11.175' => 'acertr', 'Atru.chr11.653' => 'acertr', 'Atru.chr3.1616' => 'acertr', 'Atru.chr4.2230' => 'acertr', 'Atru.chr4.2232' => 'acertr', 'Atru.chr5.1598' => 'acertr', 'Atru.chr5.1600' => 'acertr', 'Atru.chr5.2188' => 'acertr', 'AUR62008326' => 'cqu', 'AUR62011922' => 'cqu', 'AUR62011924' => 'cqu', 'AUR62021771' => 'cqu', 'AUR62032237' => 'cqu', 'AUR62032240' => 'cqu', 'BcaB01g05572' => 'bca', 'BcaB02g10337' => 'bca', 'BcaB04g19944' => 'bca', 'BcaB05g21548' => 'bca', 'BcaB05g21549' => 'bca', 'BcaB05g23227' => 'bca', 'BcaB06g26256' => 'bca', 'BcaB06g26257' => 'bca', 'BcaB06g28379' => 'bca', 'BcaC02g11159' => 'bca', 'BcaC03g13258' => 'bca', 'BcaC03g13259' => 'bca', 'BcaC05g24456' => 'bca', 'BcaC05g24457' => 'bca', 'BcaC07g36922' => 'bca', 'BcaC07g36923' => 'bca', 'BcaC07g42050' => 'bca', 'BcaC07g42176' => 'bca', 'BcaC07g42195' => 'bca', 'BcaC07g42196' => 'bca', 'BcaNung06674' => 'bca', 'BolC2t06351H' => 'bol', 'BolC2t06352H' => 'bol', 'BolC3t12993H' => 'bol', 'BolC4t23525H' => 'bol', 'BolC4t27475H' => 'bol', 'BolC5t29025H' => 'bol', 'BolC5t29026H' => 'bol', 'BolC8t46898H' => 'bol', 'BolC8t46899H' => 'bol', 'BolC8t52630H' => 'bol', 'BolC8t52765H' => 'bol', 'BolC9t53824H' => 'bol', 'BraA03t09760Z' => 'bra', 'BraA03t10990Z' => 'bra', 'BraA05t20413Z' => 'bra', 'BraA08t35602Z' => 'bra', 'BraA09t36458Z' => 'bra', 'BraA09t42018Z' => 'bra', 'BraA09t42129Z' => 'bra', 'BraA10t42536Z' => 'bra', 'BraA10t42537Z' => 'bra', 'C01p10690' => 'bna', 'C02p03890' => 'bna', 'C02p03900' => 'bna', 'C03p04620' => 'bna', 'C04p19870' => 'bna', 'C04p59670' => 'bna', 'C05p02460' => 'bna', 'C05p02470' => 'bna', 'C08p00980' => 'bna', 'C08p00990' => 'bna', 'C08p51030' => 'bna', 'C08p52360' => 'bna', 'C09p09120' => 'bna', 'CAN.G19.15' => 'can', 'CAN.G251.10' => 'can', 'CAN.G251.9' => 'can', 'CAN.G398.24' => 'can', 'CAN.G410.32' => 'can', 'CAN.G881.2' => 'can', 'CANSAT01G3025' => 'cansat', 'CANSAT78G1211' => 'cansat', 'CANSAT78G1218' => 'cansat', 'CANSAT78G1521' => 'cansat', 'CANSAT78G1670' => 'cansat', 'CARHR003600' => 'chi', 'CARHR003610' => 'chi', 'CARHR006290' => 'chi', 'CARHR006430' => 'chi', 'CARHR124110' => 'chi', 'CARHR203870' => 'chi', 'CARHR203880' => 'chi', 'CARHR203890' => 'chi', 'CARHR276880' => 'chi', 'Carub.0001s0346' => 'cru', 'Carub.0001s0347' => 'cru', 'Carub.0001s0607' => 'cru', 'Carub.0003s2768' => 'cru', 'Carub.0003s2769' => 'cru', 'Carub.0004s1178' => 'cru', 'Carub.0006s0806' => 'cru', 'Carub.0006s0807' => 'cru', 'Carub.0006s0808' => 'cru', 'Carub.0008s0501' => 'cru', 'Carub.0008s2379' => 'cru', 'Ca_08655_v3' => 'car', 'Ca_08922_v3' => 'car', 'Ca_08923_v3' => 'car', 'Ca_09119_v3' => 'car', 'Ca_09703_v3' => 'car', 'Ca_09705_v3' => 'car', 'Ca_09835_v3' => 'car', 'Ca_26403_v3' => 'car', 'Ca_30719_v3' => 'car', 'CBR_g17958' => 'cbr', 'CBR_g40516' => 'cbr', 'Cc00_g05350' => 'ccan', 'Cc01_g18690' => 'ccan', 'Cc03_g04830' => 'ccan', 'Cc03_g04850' => 'ccan', 'CDE02G4469' => 'cde', 'CDE06G0883' => 'cde', 'CDE06G1295' => 'cde', 'CDE06G1390' => 'cde', 'CDE07G0584' => 'cde', 'CDE07G1084' => 'cde', 'CDE08G1259' => 'cde', 'Cfa002341' => 'cfa', 'Cfa024337' => 'cfa', 'Ciclev10004749m.g' => 'ccl', 'Ciclev10006127m.g' => 'ccl', 'Ciclev10019720m.g' => 'ccl', 'Ciclev10022652m.g' => 'ccl', 'CiPaw.01G190400' => 'cil', 'CiPaw.01G190500' => 'cil', 'CiPaw.02G116400' => 'cil', 'CiPaw.02G116500' => 'cil', 'CiPaw.04G183000' => 'cil', 'CiPaw.04G183300' => 'cil', 'ClCG05G004610' => 'cla', 'ClCG05G004620' => 'cla', 'ClCG06G006730' => 'cla', 'ClCG06G006740' => 'cla', 'ClCG11G003690' => 'cla', 'COL.COLO4_08276' => 'col', 'COL.COLO4_08277' => 'col', 'COL.COLO4_15787' => 'col', 'COL.COLO4_15789' => 'col', 'Cpa.g.c44815' => 'cpa', 'Cpa.g.sc52.144' => 'cpa', 'Cpa.g.sc58.46' => 'cpa', 'Cpa.g.sc58.47' => 'cpa', 'Cre08.g360900' => 'cre', 'CsaV3_2G013030' => 'csa', 'CsaV3_2G013050' => 'csa', 'CsaV3_2G015620' => 'csa', 'CsaV3_3G012590' => 'csa', 'CsaV3_3G012600' => 'csa', 'CSS0001641' => 'camsi', 'CSS0008310' => 'camsi', 'CSS0013011' => 'camsi', 'CSS0017147' => 'camsi', 'CSS0022970' => 'camsi', 'CSS0025655' => 'camsi', 'CSS0028665' => 'camsi', 'CSS0029117' => 'camsi', 'CSS0032024' => 'camsi', 'CSS0039681' => 'camsi', 'CSS0046516' => 'camsi', 'CSS0050307' => 'camsi', 'DCAR_005871' => 'dca', 'DCAR_007342' => 'dca', 'DCAR_024228' => 'dca', 'DCAR_027277' => 'dca', 'DCAR_030718' => 'dca', 'Dinv20287' => 'din', 'Dinv22461' => 'din', 'Dinv22464' => 'din', 'Dinv29912' => 'din', 'Dinv29913' => 'din', 'Dinv34580' => 'din', 'Dinv34582' => 'din', 'Dinv44632' => 'din', 'Duzib052G0266' => 'dzi', 'Duzib133G0907' => 'dzi', 'Duzib133G1034' => 'dzi', 'Duzib138G0207' => 'dzi', 'Duzib138G0491' => 'dzi', 'Duzib151G0812' => 'dzi', 'Duzib151G1166' => 'dzi', 'Duzib168G0192' => 'dzi', 'Duzib211G0077' => 'dzi', 'Duzib212G0429' => 'dzi', 'Duzib212G0472' => 'dzi', 'ECA233G2617' => 'eca', 'ECA236G4188' => 'eca', 'ECA240G0936' => 'eca', 'ECA240G1129' => 'eca', 'ECA247G0623' => 'eca', 'EL10Ac5g10451' => 'bvu', 'EL10Ac5g10453' => 'bvu', 'EL10Ac5g10894' => 'bvu', 'Eucgr.H00192' => 'egr', 'Eucgr.H00193' => 'egr', 'Eucgr.H00194' => 'egr', 'Eucgr.J01562' => 'egr', 'Eucgr.K03301' => 'egr', 'FAN02G0632' => 'fan', 'FAN05G5378' => 'fan', 'FAN09G3247' => 'fan', 'FAN12G0435' => 'fan', 'FAN12G2426' => 'fan', 'FAN14G1707' => 'fan', 'FAN14G4725' => 'fan', 'FAN15G2071' => 'fan', 'FAN17G3065' => 'fan', 'FAN19G1376' => 'fan', 'FAN20G0354' => 'fan', 'FAN20G2429' => 'fan', 'FAN20G2658' => 'fan', 'FAN24G2343' => 'fan', 'FAN27G2362' => 'fan', 'FAN28G1765' => 'fan', 'FvH4_1g16020' => 'fve', 'FvH4_2g04890' => 'fve', 'FvH4_2g22270' => 'fve', 'FvH4_4g02630' => 'fve', 'FvH4_4g02640' => 'fve', 'FvH4_6g02650' => 'fve', 'Glyma.02G140600' => 'gma', 'Glyma.03G159900' => 'gma', 'Glyma.05G234800' => 'gma', 'Glyma.07G269600' => 'gma', 'Glyma.08G042300' => 'gma', 'Glyma.10G033500' => 'gma', 'Glyma.10G185200' => 'gma', 'Glyma.17G004300' => 'gma', 'Glyma.19G161900' => 'gma', 'Glyma.20G205100' => 'gma', 'Glyma.20G205200' => 'gma', 'Gohir.A01G139101' => 'ghi', 'Gohir.A02G035600' => 'ghi', 'Gohir.A02G117901' => 'ghi', 'Gohir.A07G210100' => 'ghi', 'Gohir.A07G210200' => 'ghi', 'Gohir.A08G061100' => 'ghi', 'Gohir.A09G223000' => 'ghi', 'Gohir.A09G223100' => 'ghi', 'Gohir.A10G113900' => 'ghi', 'Gohir.A10G114000' => 'ghi', 'Gohir.D02G042300' => 'ghi', 'Gohir.D07G216100' => 'ghi', 'Gohir.D07G216200' => 'ghi', 'Gohir.D08G070400' => 'ghi', 'Gohir.D09G225000' => 'ghi', 'Gohir.D09G225100' => 'ghi', 'Gohir.D10G152300' => 'ghi', 'Gohir.D10G153200' => 'ghi', 'Gohir.D11G133701' => 'ghi', 'Gorai.004G074100' => 'gra', 'Gorai.005G046800' => 'gra', 'Gorai.006G246500' => 'gra', 'Gorai.006G246600' => 'gra', 'Gorai.007G142900' => 'gra', 'Gorai.011G171000' => 'gra', 'Gorai.011G171100' => 'gra', 'Gorai.013G104300' => 'gra', 'Gorai.013G104400' => 'gra', 'GSVIVG01000754001' => 'vvi', 'GSVIVG01000756001' => 'vvi', 'GSVIVG01010903001' => 'vvi', 'GSVIVG01017623001' => 'vvi', 'GSVIVG01018113001' => 'vvi', 'GSVIVG01018116001' => 'vvi', 'GSVIVG01018118001' => 'vvi', 'HanXRQChr03g0076211' => 'han', 'HanXRQChr03g0092431' => 'han', 'HanXRQChr03g0092441' => 'han', 'HanXRQChr03g0092591' => 'han', 'HanXRQChr03g0092671' => 'han', 'HanXRQChr03g0092681' => 'han', 'HanXRQChr03g0092691' => 'han', 'HanXRQChr03g0092701' => 'han', 'HanXRQChr03g0092721' => 'han', 'HanXRQChr03g0092731' => 'han', 'HanXRQChr04g0113681' => 'han', 'HanXRQChr10g0281371' => 'han', 'HanXRQChr11g0337141' => 'han', 'HanXRQChr13g0424521' => 'han', 'HanXRQChr13g0424531' => 'han', 'HanXRQChr13g0424541' => 'han', 'HanXRQChr16g0498221' => 'han', 'Haze_04377' => 'cav', 'Haze_11298' => 'cav', 'Haze_24547' => 'cav', 'Haze_24550' => 'cav', 'Haze_26587' => 'cav', 'Hma1.2p1_0650F.1_g195410' => 'hma', 'Hma1.2p1_0893F.1_g233470' => 'hma', 'HPP92_006508' => 'vpl', 'HPP92_024780' => 'vpl', 'Hund02688' => 'sun', 'Hund09380' => 'sun', 'Hund09381' => 'sun', 'Hund09832' => 'sun', 'Hund09833' => 'sun', 'Hund11351' => 'sun', 'Hund11513' => 'sun', 'Lalb_Chr06g0162591' => 'lal', 'Lalb_Chr06g0162601' => 'lal', 'Lalb_Chr06g0169321' => 'lal', 'Lalb_Chr09g0330951' => 'lal', 'Lalb_Chr16g0387631' => 'lal', 'Lalb_Chr21g0306241' => 'lal', 'Lalb_Chr25g0290051' => 'lal', 'Lalb_Chr25g0290061' => 'lal', 'Lalb_Chr25g0290071' => 'lal', 'Lj1g0003876' => 'lja', 'Lj1P1207T36' => 'lonja', 'Lj2C1156G12' => 'lonja', 'Lj3A793G39' => 'lonja', 'Lj3C580G2' => 'lonja', 'Lj3C780G2' => 'lonja', 'Lj3C780T4' => 'lonja', 'Lj3C793G9' => 'lonja', 'Lj4g0012960' => 'lja', 'Lj5g0021252' => 'lja', 'Lj5g0021484' => 'lja', 'Lj5g0024528' => 'lja', 'Lj6A399T12' => 'lonja', 'Lj6A656G65' => 'lonja', 'Lsat_1_v5_gn_3_125500' => 'lsa', 'Lsat_1_v5_gn_3_125540' => 'lsa', 'Lsat_1_v5_gn_5_72701' => 'lsa', 'Lsat_1_v5_gn_8_91560' => 'lsa', 'Lsat_1_v5_gn_9_9640' => 'lsa', 'Manes.01G200600' => 'mes', 'Manes.01G200700' => 'mes', 'Manes.03G168900' => 'mes', 'Manes.03G169000' => 'mes', 'Manes.05G085801' => 'mes', 'Manes.05G086200' => 'mes', 'Manes.15G036700' => 'mes', 'Manes.15G036900' => 'mes', 'Mapoly0004s0172' => 'mpo', 'Mapoly0023s0001' => 'mpo', 'Mapoly0142s0012' => 'mpo', 'MBI01_g32854_MAGBIO' => 'mbi', 'MBI11_g24427_MAGBIO' => 'mbi', 'MBI11_g47319_MAGBIO' => 'mbi', 'MCO01G433' => 'mco', 'MD00G1187800' => 'mdo', 'MD04G1226500' => 'mdo', 'MD05G1203900' => 'mdo', 'MD10G1191100' => 'mdo', 'MD12G1243500' => 'mdo', 'MD13G1207000' => 'mdo', 'MD13G1207100' => 'mdo', 'MD16G1208600' => 'mdo', 'Medtr1g050352' => 'mtr', 'Medtr1g070385' => 'mtr', 'Medtr1g070450' => 'mtr', 'Medtr1g075200' => 'mtr', 'Medtr1g075250' => 'mtr', 'Medtr1g075260' => 'mtr', 'Medtr1g475250' => 'mtr', 'Medtr4g075450' => 'mtr', 'Medtr7g096300' => 'mtr', 'Medtr8g105110' => 'mtr', 'MELO3C006470.2' => 'cme', 'MELO3C006471.2' => 'cme', 'MELO3C020772.2' => 'cme', 'MELO3C026780.2' => 'cme', 'MELO3C026781.2' => 'cme', 'Migut.D00390' => 'egut', 'Migut.G00435' => 'egut', 'Migut.G00436' => 'egut', 'Migut.G00718' => 'egut', 'MSTRG.21891' => 'ama', 'MSTRG.26910' => 'ama', 'MSTRG.4099' => 'ama', 'MSTRG.9925' => 'ama', 'Nitab4.5_0000165g0010' => 'nta', 'Nitab4.5_0000209g0180' => 'nta', 'Nitab4.5_0000244g0440' => 'nta', 'Nitab4.5_0000525g0220' => 'nta', 'Nitab4.5_0001597g0020' => 'nta', 'Nitab4.5_0001878g0040' => 'nta', 'Nitab4.5_0001878g0060' => 'nta', 'Nitab4.5_0002838g0100' => 'nta', 'Nitab4.5_0002838g0120' => 'nta', 'Nitab4.5_0004798g0030' => 'nta', 'Nitab4.5_0005420g0010' => 'nta', 'Nitab4.5_0005507g0010' => 'nta', 'Nitab4.5_0005574g0020' => 'nta', 'Nitab4.5_0005838g0010' => 'nta', 'Nitab4.5_0010580g0020' => 'nta', 'Nn1g02599' => 'nnu', 'Nn1g02608' => 'nnu', 'Nn3g17742' => 'nnu', 'Nn3g19534' => 'nnu', 'Nn3g19535' => 'nnu', 'Oeu008790.1' => 'oeu', 'Oeu008792.1' => 'oeu', 'Oeu032590.1' => 'oeu', 'Oeu035349.1' => 'oeu', 'Oeu049791.1' => 'oeu', 'Os01g0774500' => 'osa', 'Os03g0628800' => 'osa', 'Os03g0798600' => 'osa', 'Os05g0508800' => 'osa', 'Peaxi162Scf00036g02018' => 'pax', 'Peaxi162Scf00578g00032' => 'pax', 'Peaxi162Scf00578g00317' => 'pax', 'Peaxi162Scf00785g00114' => 'pax', 'Peaxi162Scf00813g00119' => 'pax', 'Peaxi162Scf00906g00227' => 'pax', 'PGR004G0875' => 'pgr', 'PGR004G2424' => 'pgr', 'PGR031G1239' => 'pgr', 'PGR031G2474' => 'pgr', 'PGR044G0423' => 'pgr', 'PGSC0003DMG400001128' => 'stu', 'PGSC0003DMG400007336' => 'stu', 'PGSC0003DMG400016318' => 'stu', 'PGSC0003DMG400016319' => 'stu', 'PGSC0003DMG400018074' => 'stu', 'Phvul.001G157700' => 'pvu', 'Phvul.002G148550' => 'pvu', 'Phvul.002G320200' => 'pvu', 'Phvul.003G089200' => 'pvu', 'Phvul.007G126000' => 'pvu', 'Phvul.007G126100' => 'pvu', 'Phvul.007G178000' => 'pvu', 'Phvul.007G178200' => 'pvu', 'Potri.002G043000' => 'ptr', 'Potri.002G043200' => 'ptr', 'Potri.003G123750' => 'ptr', 'Potri.005G055401' => 'ptr', 'Potri.005G219700' => 'ptr', 'Potri.005G220000' => 'ptr', 'Potri.008G161901' => 'ptr', 'Potri.008G162000' => 'ptr', 'Potri.008G162400' => 'ptr', 'Potri.010G076900' => 'ptr', 'Pp3c12_9180' => 'ppa', 'Pp3c13_19770' => 'ppa', 'Pp3c14_22950' => 'ppa', 'Pp3c16_12160' => 'ppa', 'Pp3c27_7820' => 'ppa', 'Pp3c2_3490' => 'ppa', 'Pp3c3_23700' => 'ppa', 'Pp3c3_36520' => 'ppa', 'Pp3c4_15250' => 'ppa', 'PRCOL_00007002' => 'pco', 'Prupe.1G030600' => 'ppe', 'Prupe.1G030700' => 'ppe', 'Prupe.6G345200' => 'ppe', 'Prupe.8G230300' => 'ppe', 'Prupe.8G230500' => 'ppe', 'Psat3g059600' => 'psa', 'Psat5g200920' => 'psa', 'Psat6g056440' => 'psa', 'Psat6g057360' => 'psa', 'Psat6g134120' => 'psa', 'Psat6g134160' => 'psa', 'Psat7g008640' => 'psa', 'Psat7g185240' => 'psa', 'PSO017G1330' => 'pso', 'PSO063G6097' => 'pso', 'PSO170G0835' => 'pso', 'PSO170G2499' => 'pso', 'PSO210G5058' => 'pso', 'PSO210G6154' => 'pso', 'PSO585G0031' => 'pso', 'PSO832G0264' => 'pso', 'PSO832G4288' => 'pso', 'QL03p027355' => 'qlo', 'QL03p027430' => 'qlo', 'QL04p081380' => 'qlo', 'QL06p015642' => 'qlo', 'QL06p015650' => 'qlo', 'QL06p015686' => 'qlo', 'QL12p042927' => 'qlo', 'QL93p1863_0035' => 'qlo', 'RcHm_v2.0_Chr3g0450581' => 'rch', 'RcHm_v2.0_Chr4g0390371' => 'rch', 'RcHm_v2.0_Chr4g0390381' => 'rch', 'RcHm_v2.0_Chr4g0390491' => 'rch', 'RcHm_v2.0_Chr4g0390501' => 'rch', 'RcHm_v2.0_Chr6g0289231' => 'rch', 'Rhsim04G0190400' => 'rsi', 'Rhsim04G0190500' => 'rsi', 'Rhsim04G0190600' => 'rsi', 'Rhsim13G0031400' => 'rsi', 'Rhsim13G0165600' => 'rsi', 'RhsimUnG0114600' => 'rsi', 'RhsimUnG0114700' => 'rsi', 'Sabra02G0034800' => 'sbr', 'Sabra02G0035100' => 'sbr', 'Sabra05G0168600' => 'sbr', 'Sabra05G0168800' => 'sbr', 'Sabra08G0123700' => 'sbr', 'Sabra10G0031900' => 'sbr', 'Sabra13G0039000' => 'sbr', 'SalBow2G0782' => 'sbo', 'SalBow2G1403' => 'sbo', 'SalBow4G0074' => 'sbo', 'SalBow4G2635' => 'sbo', 'SalBow5G3010' => 'sbo', 'Sc05g0000870' => 'sci', 'Sc05g0000890' => 'sci', 'Sc13g0005000' => 'sci', 'Sc13g0005030' => 'sci', 'Sc19g0003790' => 'sci', 'Sc19g0003800' => 'sci', 'Sed0003467' => 'sed', 'Sed0009355' => 'sed', 'Sed0009894' => 'sed', 'Sed0011972' => 'sed', 'Sed0021483' => 'sed', 'Sed0021750' => 'sed', 'Sed0026279' => 'sed', 'SEGI_05312' => 'sgi', 'SEGI_10112' => 'sgi', 'SEGI_15835' => 'sgi', 'SEGI_30386' => 'sgi', 'SEGI_34122' => 'sgi', 'SEGI_35063' => 'sgi', 'SGA_v2.0_scaffold101G29794' => 'sas', 'SGA_v2.0_scaffold1G00573' => 'sas', 'SGA_v2.0_scaffold79G25637' => 'sas', 'SGA_v2.0_scaffold88G27283' => 'sas', 'SGA_v2.0_scaffold88G27285' => 'sas', 'SGA_v2.0_scaffold88G27331' => 'sas', 'SHI09937' => 'shi', 'SMO119G0302' => 'smo', 'SMO137G0231' => 'smo', 'SMO367G1151' => 'smo', 'Solyc02g082000.3' => 'sly', 'Solyc06g031670.3' => 'sly', 'Solyc06g053810.3' => 'sly', 'Solyc07g025457.1' => 'sly', 'Solyc08g059740.1' => 'sly', 'Solyc08g059750.3' => 'sly', 'Solyc09g083370.3' => 'sly', 'Solyc12g038950.3' => 'sly', 'Sopen02g026630' => 'spe', 'Sopen06g018930' => 'spe', 'Sopen06g018940' => 'spe', 'Sopen08g009460' => 'spe', 'Sopen09g032290' => 'spe', 'Sp1g03080' => 'spa', 'Sp1g03090' => 'spa', 'Sp1g05480' => 'spa', 'Sp2g07860' => 'spa', 'Sp2g08430' => 'spa', 'Sp2g08440' => 'spa', 'Sp2g26200' => 'spa', 'Sp4g13170' => 'spa', 'Sp6g33840' => 'spa', 'SpUn1204_0010' => 'spa', 'TAR365G0908' => 'tar', 'TAR381G1270' => 'tar', 'TAR381G1651' => 'tar', 'TAR625G1131' => 'tar', 'TAR633G0962' => 'tar', 'TAR633G1729' => 'tar', 'TAR633G1864' => 'tar', 'TAR636G0221' => 'tar', 'TAR636G0314' => 'tar', 'TAR636G3202' => 'tar', 'THA.LOC104800805' => 'tha', 'THA.LOC104801096' => 'tha', 'THA.LOC104801555' => 'tha', 'THA.LOC104808491' => 'tha', 'THA.LOC104808595' => 'tha', 'THA.LOC104815985' => 'tha', 'THA.LOC104822250' => 'tha', 'THA.LOC104826071' => 'tha', 'Thecc.01G265200' => 'tca', 'Thecc.01G265300' => 'tca', 'Thecc.01G265700' => 'tca', 'Thecc.03G109100' => 'tca', 'Thecc.04G245900' => 'tca', 'Thecc.04G246000' => 'tca', 'Thhalv10003334m.g' => 'esa', 'Thhalv10005508m.g' => 'esa', 'Thhalv10005643m.g' => 'esa', 'Thhalv10007316m.g' => 'esa', 'Thhalv10009006m.g' => 'esa', 'Thhalv10009309m.g' => 'esa', 'Thhalv10014917m.g' => 'esa', 'Thhalv10014919m.g' => 'esa', 'Thhalv10015393m.g' => 'esa', 'Thhalv10016515m.g' => 'esa', 'Thhalv10029242m.g' => 'esa', 'TPR.G16654' => 'tpr', 'TPR.G20589' => 'tpr', 'TPR.G23029' => 'tpr', 'TPR.G27731' => 'tpr', 'TPR.G28889' => 'tpr', 'TPR.G28899' => 'tpr', 'TPR.G30846' => 'tpr', 'TPR.G5452' => 'tpr', 'TPR.G5713' => 'tpr', 'TPR.G9046' => 'tpr', 'TPR.G9061' => 'tpr', 'TWI09G1075' => 'twi', 'TWI12G0806' => 'twi', 'TWI18G0108' => 'twi', 'TWI53G1361' => 'twi', 'TWI73G0185' => 'twi', 'TWI73G0427' => 'twi', 'unitig_37.g12001' => 'ugi', 'unitig_747.g21660' => 'ugi', 'unitig_748.g7232' => 'ugi', 'unitig_748.g7315' => 'ugi', 'unitig_85.g27262' => 'ugi', 'unitig_92.g28220' => 'ugi', 'vmacro02632' => 'vma', 'vmacro08410' => 'vma', 'vmacro08411' => 'vma', 'vmacro15407' => 'vma', 'VMungo0251G3619' => 'vmu', 'VMungo0720G1204' => 'vmu', 'VMungo0720G1918' => 'vmu', 'VMungo0720G2387' => 'vmu', 'VMungo0720G2961' => 'vmu', 'VMungo1215G2154' => 'vmu', 'VMungo1383G2411' => 'vmu', 'Zm00001eb051130' => 'zma', 'Zm00001eb116830' => 'zma', 'Zm00001eb116850' => 'zma', 'Zm00001eb151740' => 'zma', 'Zm00001eb292360' => 'zma', 'Zm00001eb301640' => 'zma' ), 'gf_id' => 'HOM05D000856', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000856' ), 'data_identifier' => 'HOM05D000856', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000856', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p00010' => 'bna', 'A03p04160' => 'bna', 'A03p17160' => 'bna', 'A04p23370' => 'bna', 'A05p14860' => 'bna', 'A08p37020' => 'bna', 'A09p08050' => 'bna', 'A09p66800' => 'bna', 'A09p67940' => 'bna', 'A10p02680' => 'bna', 'A10p05320' => 'bna', 'Aa31LG1G20560' => 'aar', 'Aa31LG1G20610' => 'aar', 'Aa31LG1G7810' => 'aar', 'Aa31LG5G3590' => 'aar', 'Aa31LG5G6140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3819' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4683' => 'aag', 'Actinidia04480' => 'ach', 'Actinidia05466' => 'ach', 'Actinidia08445' => 'ach', 'Actinidia21170' => 'ach', 'Actinidia24812' => 'ach', 'Actinidia24951' => 'ach', 'Actinidia40088' => 'ach', 'Ah.02g111660' => 'amhyb', 'Ah.11g048900' => 'amhyb', 'Ah.11g049910' => 'amhyb', 'AL1G13870' => 'aly', 'AL1G13880' => 'aly', 'AL1G16760' => 'aly', 'AL390U10020' => 'aly', 'AL4G25520' => 'aly', 'AL6G19890' => 'aly', 'AL6G19900' => 'aly', 'AL6G19910' => 'aly', 'AL8G40100' => 'aly', 'Aqoxy2G03562' => 'aox', 'Aqoxy5G00316' => 'aox', 'Aqoxy5G00926' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1628KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1H403S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2FU6SJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.882I6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8YRY2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YN1SN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AF70II' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZA8L1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F916KL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHRD8H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KTZ8QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S22EMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8M29T' => 'arhy', 'AT1G04270' => 'ath', 'AT1G04280' => 'ath', 'AT1G06750' => 'ath', 'AT1G33850' => 'ath', 'AT2G30630' => 'ath', 'AT5G09490' => 'ath', 'AT5G09500' => 'ath', 'AT5G09510' => 'ath', 'AT5G43640' => 'ath', 'AT5G63070' => 'ath', 'ATR0605G315' => 'atr', 'Atru.chr11.175' => 'acertr', 'Atru.chr11.653' => 'acertr', 'Atru.chr3.1616' => 'acertr', 'Atru.chr4.2230' => 'acertr', 'Atru.chr4.2232' => 'acertr', 'Atru.chr5.1598' => 'acertr', 'Atru.chr5.1600' => 'acertr', 'Atru.chr5.2188' => 'acertr', 'AUR62008326' => 'cqu', 'AUR62011922' => 'cqu', 'AUR62011924' => 'cqu', 'AUR62021771' => 'cqu', 'AUR62032237' => 'cqu', 'AUR62032240' => 'cqu', 'BcaB01g05572' => 'bca', 'BcaB02g10337' => 'bca', 'BcaB04g19944' => 'bca', 'BcaB05g21548' => 'bca', 'BcaB05g21549' => 'bca', 'BcaB05g23227' => 'bca', 'BcaB06g26256' => 'bca', 'BcaB06g26257' => 'bca', 'BcaB06g28379' => 'bca', 'BcaC02g11159' => 'bca', 'BcaC03g13258' => 'bca', 'BcaC03g13259' => 'bca', 'BcaC05g24456' => 'bca', 'BcaC05g24457' => 'bca', 'BcaC07g36922' => 'bca', 'BcaC07g36923' => 'bca', 'BcaC07g42050' => 'bca', 'BcaC07g42176' => 'bca', 'BcaC07g42195' => 'bca', 'BcaC07g42196' => 'bca', 'BcaNung06674' => 'bca', 'BolC2t06351H' => 'bol', 'BolC2t06352H' => 'bol', 'BolC3t12993H' => 'bol', 'BolC4t23525H' => 'bol', 'BolC4t27475H' => 'bol', 'BolC5t29025H' => 'bol', 'BolC5t29026H' => 'bol', 'BolC8t46898H' => 'bol', 'BolC8t46899H' => 'bol', 'BolC8t52630H' => 'bol', 'BolC8t52765H' => 'bol', 'BolC9t53824H' => 'bol', 'BraA03t09760Z' => 'bra', 'BraA03t10990Z' => 'bra', 'BraA05t20413Z' => 'bra', 'BraA08t35602Z' => 'bra', 'BraA09t36458Z' => 'bra', 'BraA09t42018Z' => 'bra', 'BraA09t42129Z' => 'bra', 'BraA10t42536Z' => 'bra', 'BraA10t42537Z' => 'bra', 'C01p10690' => 'bna', 'C02p03890' => 'bna', 'C02p03900' => 'bna', 'C03p04620' => 'bna', 'C04p19870' => 'bna', 'C04p59670' => 'bna', 'C05p02460' => 'bna', 'C05p02470' => 'bna', 'C08p00980' => 'bna', 'C08p00990' => 'bna', 'C08p51030' => 'bna', 'C08p52360' => 'bna', 'C09p09120' => 'bna', 'CAN.G19.15' => 'can', 'CAN.G251.10' => 'can', 'CAN.G251.9' => 'can', 'CAN.G398.24' => 'can', 'CAN.G410.32' => 'can', 'CAN.G881.2' => 'can', 'CANSAT01G3025' => 'cansat', 'CANSAT78G1211' => 'cansat', 'CANSAT78G1218' => 'cansat', 'CANSAT78G1521' => 'cansat', 'CANSAT78G1670' => 'cansat', 'CARHR003600' => 'chi', 'CARHR003610' => 'chi', 'CARHR006290' => 'chi', 'CARHR006430' => 'chi', 'CARHR124110' => 'chi', 'CARHR203870' => 'chi', 'CARHR203880' => 'chi', 'CARHR203890' => 'chi', 'CARHR276880' => 'chi', 'Carub.0001s0346' => 'cru', 'Carub.0001s0347' => 'cru', 'Carub.0001s0607' => 'cru', 'Carub.0003s2768' => 'cru', 'Carub.0003s2769' => 'cru', 'Carub.0004s1178' => 'cru', 'Carub.0006s0806' => 'cru', 'Carub.0006s0807' => 'cru', 'Carub.0006s0808' => 'cru', 'Carub.0008s0501' => 'cru', 'Carub.0008s2379' => 'cru', 'Ca_08655_v3' => 'car', 'Ca_08922_v3' => 'car', 'Ca_08923_v3' => 'car', 'Ca_09119_v3' => 'car', 'Ca_09703_v3' => 'car', 'Ca_09705_v3' => 'car', 'Ca_09835_v3' => 'car', 'Ca_26403_v3' => 'car', 'Ca_30719_v3' => 'car', 'CBR_g17958' => 'cbr', 'CBR_g40516' => 'cbr', 'Cc00_g05350' => 'ccan', 'Cc01_g18690' => 'ccan', 'Cc03_g04830' => 'ccan', 'Cc03_g04850' => 'ccan', 'CDE02G4469' => 'cde', 'CDE06G0883' => 'cde', 'CDE06G1295' => 'cde', 'CDE06G1390' => 'cde', 'CDE07G0584' => 'cde', 'CDE07G1084' => 'cde', 'CDE08G1259' => 'cde', 'Cfa002341' => 'cfa', 'Cfa024337' => 'cfa', 'Ciclev10004749m.g' => 'ccl', 'Ciclev10006127m.g' => 'ccl', 'Ciclev10019720m.g' => 'ccl', 'Ciclev10022652m.g' => 'ccl', 'CiPaw.01G190400' => 'cil', 'CiPaw.01G190500' => 'cil', 'CiPaw.02G116400' => 'cil', 'CiPaw.02G116500' => 'cil', 'CiPaw.04G183000' => 'cil', 'CiPaw.04G183300' => 'cil', 'ClCG05G004610' => 'cla', 'ClCG05G004620' => 'cla', 'ClCG06G006730' => 'cla', 'ClCG06G006740' => 'cla', 'ClCG11G003690' => 'cla', 'COL.COLO4_08276' => 'col', 'COL.COLO4_08277' => 'col', 'COL.COLO4_15787' => 'col', 'COL.COLO4_15789' => 'col', 'Cpa.g.c44815' => 'cpa', 'Cpa.g.sc52.144' => 'cpa', 'Cpa.g.sc58.46' => 'cpa', 'Cpa.g.sc58.47' => 'cpa', 'Cre08.g360900' => 'cre', 'CsaV3_2G013030' => 'csa', 'CsaV3_2G013050' => 'csa', 'CsaV3_2G015620' => 'csa', 'CsaV3_3G012590' => 'csa', 'CsaV3_3G012600' => 'csa', 'CSS0001641' => 'camsi', 'CSS0008310' => 'camsi', 'CSS0013011' => 'camsi', 'CSS0017147' => 'camsi', 'CSS0022970' => 'camsi', 'CSS0025655' => 'camsi', 'CSS0028665' => 'camsi', 'CSS0029117' => 'camsi', 'CSS0032024' => 'camsi', 'CSS0039681' => 'camsi', 'CSS0046516' => 'camsi', 'CSS0050307' => 'camsi', 'DCAR_005871' => 'dca', 'DCAR_007342' => 'dca', 'DCAR_024228' => 'dca', 'DCAR_027277' => 'dca', 'DCAR_030718' => 'dca', 'Dinv20287' => 'din', 'Dinv22461' => 'din', 'Dinv22464' => 'din', 'Dinv29912' => 'din', 'Dinv29913' => 'din', 'Dinv34580' => 'din', 'Dinv34582' => 'din', 'Dinv44632' => 'din', 'Duzib052G0266' => 'dzi', 'Duzib133G0907' => 'dzi', 'Duzib133G1034' => 'dzi', 'Duzib138G0207' => 'dzi', 'Duzib138G0491' => 'dzi', 'Duzib151G0812' => 'dzi', 'Duzib151G1166' => 'dzi', 'Duzib168G0192' => 'dzi', 'Duzib211G0077' => 'dzi', 'Duzib212G0429' => 'dzi', 'Duzib212G0472' => 'dzi', 'ECA233G2617' => 'eca', 'ECA236G4188' => 'eca', 'ECA240G0936' => 'eca', 'ECA240G1129' => 'eca', 'ECA247G0623' => 'eca', 'EL10Ac5g10451' => 'bvu', 'EL10Ac5g10453' => 'bvu', 'EL10Ac5g10894' => 'bvu', 'Eucgr.H00192' => 'egr', 'Eucgr.H00193' => 'egr', 'Eucgr.H00194' => 'egr', 'Eucgr.J01562' => 'egr', 'Eucgr.K03301' => 'egr', 'FAN02G0632' => 'fan', 'FAN05G5378' => 'fan', 'FAN09G3247' => 'fan', 'FAN12G0435' => 'fan', 'FAN12G2426' => 'fan', 'FAN14G1707' => 'fan', 'FAN14G4725' => 'fan', 'FAN15G2071' => 'fan', 'FAN17G3065' => 'fan', 'FAN19G1376' => 'fan', 'FAN20G0354' => 'fan', 'FAN20G2429' => 'fan', 'FAN20G2658' => 'fan', 'FAN24G2343' => 'fan', 'FAN27G2362' => 'fan', 'FAN28G1765' => 'fan', 'FvH4_1g16020' => 'fve', 'FvH4_2g04890' => 'fve', 'FvH4_2g22270' => 'fve', 'FvH4_4g02630' => 'fve', 'FvH4_4g02640' => 'fve', 'FvH4_6g02650' => 'fve', 'Glyma.02G140600' => 'gma', 'Glyma.03G159900' => 'gma', 'Glyma.05G234800' => 'gma', 'Glyma.07G269600' => 'gma', 'Glyma.08G042300' => 'gma', 'Glyma.10G033500' => 'gma', 'Glyma.10G185200' => 'gma', 'Glyma.17G004300' => 'gma', 'Glyma.19G161900' => 'gma', 'Glyma.20G205100' => 'gma', 'Glyma.20G205200' => 'gma', 'Gohir.A01G139101' => 'ghi', 'Gohir.A02G035600' => 'ghi', 'Gohir.A02G117901' => 'ghi', 'Gohir.A07G210100' => 'ghi', 'Gohir.A07G210200' => 'ghi', 'Gohir.A08G061100' => 'ghi', 'Gohir.A09G223000' => 'ghi', 'Gohir.A09G223100' => 'ghi', 'Gohir.A10G113900' => 'ghi', 'Gohir.A10G114000' => 'ghi', 'Gohir.D02G042300' => 'ghi', 'Gohir.D07G216100' => 'ghi', 'Gohir.D07G216200' => 'ghi', 'Gohir.D08G070400' => 'ghi', 'Gohir.D09G225000' => 'ghi', 'Gohir.D09G225100' => 'ghi', 'Gohir.D10G152300' => 'ghi', 'Gohir.D10G153200' => 'ghi', 'Gohir.D11G133701' => 'ghi', 'Gorai.004G074100' => 'gra', 'Gorai.005G046800' => 'gra', 'Gorai.006G246500' => 'gra', 'Gorai.006G246600' => 'gra', 'Gorai.007G142900' => 'gra', 'Gorai.011G171000' => 'gra', 'Gorai.011G171100' => 'gra', 'Gorai.013G104300' => 'gra', 'Gorai.013G104400' => 'gra', 'GSVIVG01000754001' => 'vvi', 'GSVIVG01000756001' => 'vvi', 'GSVIVG01010903001' => 'vvi', 'GSVIVG01017623001' => 'vvi', 'GSVIVG01018113001' => 'vvi', 'GSVIVG01018116001' => 'vvi', 'GSVIVG01018118001' => 'vvi', 'HanXRQChr03g0076211' => 'han', 'HanXRQChr03g0092431' => 'han', 'HanXRQChr03g0092441' => 'han', 'HanXRQChr03g0092591' => 'han', 'HanXRQChr03g0092671' => 'han', 'HanXRQChr03g0092681' => 'han', 'HanXRQChr03g0092691' => 'han', 'HanXRQChr03g0092701' => 'han', 'HanXRQChr03g0092721' => 'han', 'HanXRQChr03g0092731' => 'han', 'HanXRQChr04g0113681' => 'han', 'HanXRQChr10g0281371' => 'han', 'HanXRQChr11g0337141' => 'han', 'HanXRQChr13g0424521' => 'han', 'HanXRQChr13g0424531' => 'han', 'HanXRQChr13g0424541' => 'han', 'HanXRQChr16g0498221' => 'han', 'Haze_04377' => 'cav', 'Haze_11298' => 'cav', 'Haze_24547' => 'cav', 'Haze_24550' => 'cav', 'Haze_26587' => 'cav', 'Hma1.2p1_0650F.1_g195410' => 'hma', 'Hma1.2p1_0893F.1_g233470' => 'hma', 'HPP92_006508' => 'vpl', 'HPP92_024780' => 'vpl', 'Hund02688' => 'sun', 'Hund09380' => 'sun', 'Hund09381' => 'sun', 'Hund09832' => 'sun', 'Hund09833' => 'sun', 'Hund11351' => 'sun', 'Hund11513' => 'sun', 'Lalb_Chr06g0162591' => 'lal', 'Lalb_Chr06g0162601' => 'lal', 'Lalb_Chr06g0169321' => 'lal', 'Lalb_Chr09g0330951' => 'lal', 'Lalb_Chr16g0387631' => 'lal', 'Lalb_Chr21g0306241' => 'lal', 'Lalb_Chr25g0290051' => 'lal', 'Lalb_Chr25g0290061' => 'lal', 'Lalb_Chr25g0290071' => 'lal', 'Lj1g0003876' => 'lja', 'Lj1P1207T36' => 'lonja', 'Lj2C1156G12' => 'lonja', 'Lj3A793G39' => 'lonja', 'Lj3C580G2' => 'lonja', 'Lj3C780G2' => 'lonja', 'Lj3C780T4' => 'lonja', 'Lj3C793G9' => 'lonja', 'Lj4g0012960' => 'lja', 'Lj5g0021252' => 'lja', 'Lj5g0021484' => 'lja', 'Lj5g0024528' => 'lja', 'Lj6A399T12' => 'lonja', 'Lj6A656G65' => 'lonja', 'Lsat_1_v5_gn_3_125500' => 'lsa', 'Lsat_1_v5_gn_3_125540' => 'lsa', 'Lsat_1_v5_gn_5_72701' => 'lsa', 'Lsat_1_v5_gn_8_91560' => 'lsa', 'Lsat_1_v5_gn_9_9640' => 'lsa', 'Manes.01G200600' => 'mes', 'Manes.01G200700' => 'mes', 'Manes.03G168900' => 'mes', 'Manes.03G169000' => 'mes', 'Manes.05G085801' => 'mes', 'Manes.05G086200' => 'mes', 'Manes.15G036700' => 'mes', 'Manes.15G036900' => 'mes', 'Mapoly0004s0172' => 'mpo', 'Mapoly0023s0001' => 'mpo', 'Mapoly0142s0012' => 'mpo', 'MBI01_g32854_MAGBIO' => 'mbi', 'MBI11_g24427_MAGBIO' => 'mbi', 'MBI11_g47319_MAGBIO' => 'mbi', 'MCO01G433' => 'mco', 'MD00G1187800' => 'mdo', 'MD04G1226500' => 'mdo', 'MD05G1203900' => 'mdo', 'MD10G1191100' => 'mdo', 'MD12G1243500' => 'mdo', 'MD13G1207000' => 'mdo', 'MD13G1207100' => 'mdo', 'MD16G1208600' => 'mdo', 'Medtr1g050352' => 'mtr', 'Medtr1g070385' => 'mtr', 'Medtr1g070450' => 'mtr', 'Medtr1g075200' => 'mtr', 'Medtr1g075250' => 'mtr', 'Medtr1g075260' => 'mtr', 'Medtr1g475250' => 'mtr', 'Medtr4g075450' => 'mtr', 'Medtr7g096300' => 'mtr', 'Medtr8g105110' => 'mtr', 'MELO3C006470.2' => 'cme', 'MELO3C006471.2' => 'cme', 'MELO3C020772.2' => 'cme', 'MELO3C026780.2' => 'cme', 'MELO3C026781.2' => 'cme', 'Migut.D00390' => 'egut', 'Migut.G00435' => 'egut', 'Migut.G00436' => 'egut', 'Migut.G00718' => 'egut', 'MSTRG.21891' => 'ama', 'MSTRG.26910' => 'ama', 'MSTRG.4099' => 'ama', 'MSTRG.9925' => 'ama', 'Nitab4.5_0000165g0010' => 'nta', 'Nitab4.5_0000209g0180' => 'nta', 'Nitab4.5_0000244g0440' => 'nta', 'Nitab4.5_0000525g0220' => 'nta', 'Nitab4.5_0001597g0020' => 'nta', 'Nitab4.5_0001878g0040' => 'nta', 'Nitab4.5_0001878g0060' => 'nta', 'Nitab4.5_0002838g0100' => 'nta', 'Nitab4.5_0002838g0120' => 'nta', 'Nitab4.5_0004798g0030' => 'nta', 'Nitab4.5_0005420g0010' => 'nta', 'Nitab4.5_0005507g0010' => 'nta', 'Nitab4.5_0005574g0020' => 'nta', 'Nitab4.5_0005838g0010' => 'nta', 'Nitab4.5_0010580g0020' => 'nta', 'Nn1g02599' => 'nnu', 'Nn1g02608' => 'nnu', 'Nn3g17742' => 'nnu', 'Nn3g19534' => 'nnu', 'Nn3g19535' => 'nnu', 'Oeu008790.1' => 'oeu', 'Oeu008792.1' => 'oeu', 'Oeu032590.1' => 'oeu', 'Oeu035349.1' => 'oeu', 'Oeu049791.1' => 'oeu', 'Os01g0774500' => 'osa', 'Os03g0628800' => 'osa', 'Os03g0798600' => 'osa', 'Os05g0508800' => 'osa', 'Peaxi162Scf00036g02018' => 'pax', 'Peaxi162Scf00578g00032' => 'pax', 'Peaxi162Scf00578g00317' => 'pax', 'Peaxi162Scf00785g00114' => 'pax', 'Peaxi162Scf00813g00119' => 'pax', 'Peaxi162Scf00906g00227' => 'pax', 'PGR004G0875' => 'pgr', 'PGR004G2424' => 'pgr', 'PGR031G1239' => 'pgr', 'PGR031G2474' => 'pgr', 'PGR044G0423' => 'pgr', 'PGSC0003DMG400001128' => 'stu', 'PGSC0003DMG400007336' => 'stu', 'PGSC0003DMG400016318' => 'stu', 'PGSC0003DMG400016319' => 'stu', 'PGSC0003DMG400018074' => 'stu', 'Phvul.001G157700' => 'pvu', 'Phvul.002G148550' => 'pvu', 'Phvul.002G320200' => 'pvu', 'Phvul.003G089200' => 'pvu', 'Phvul.007G126000' => 'pvu', 'Phvul.007G126100' => 'pvu', 'Phvul.007G178000' => 'pvu', 'Phvul.007G178200' => 'pvu', 'Potri.002G043000' => 'ptr', 'Potri.002G043200' => 'ptr', 'Potri.003G123750' => 'ptr', 'Potri.005G055401' => 'ptr', 'Potri.005G219700' => 'ptr', 'Potri.005G220000' => 'ptr', 'Potri.008G161901' => 'ptr', 'Potri.008G162000' => 'ptr', 'Potri.008G162400' => 'ptr', 'Potri.010G076900' => 'ptr', 'Pp3c12_9180' => 'ppa', 'Pp3c13_19770' => 'ppa', 'Pp3c14_22950' => 'ppa', 'Pp3c16_12160' => 'ppa', 'Pp3c27_7820' => 'ppa', 'Pp3c2_3490' => 'ppa', 'Pp3c3_23700' => 'ppa', 'Pp3c3_36520' => 'ppa', 'Pp3c4_15250' => 'ppa', 'PRCOL_00007002' => 'pco', 'Prupe.1G030600' => 'ppe', 'Prupe.1G030700' => 'ppe', 'Prupe.6G345200' => 'ppe', 'Prupe.8G230300' => 'ppe', 'Prupe.8G230500' => 'ppe', 'Psat3g059600' => 'psa', 'Psat5g200920' => 'psa', 'Psat6g056440' => 'psa', 'Psat6g057360' => 'psa', 'Psat6g134120' => 'psa', 'Psat6g134160' => 'psa', 'Psat7g008640' => 'psa', 'Psat7g185240' => 'psa', 'PSO017G1330' => 'pso', 'PSO063G6097' => 'pso', 'PSO170G0835' => 'pso', 'PSO170G2499' => 'pso', 'PSO210G5058' => 'pso', 'PSO210G6154' => 'pso', 'PSO585G0031' => 'pso', 'PSO832G0264' => 'pso', 'PSO832G4288' => 'pso', 'QL03p027355' => 'qlo', 'QL03p027430' => 'qlo', 'QL04p081380' => 'qlo', 'QL06p015642' => 'qlo', 'QL06p015650' => 'qlo', 'QL06p015686' => 'qlo', 'QL12p042927' => 'qlo', 'QL93p1863_0035' => 'qlo', 'RcHm_v2.0_Chr3g0450581' => 'rch', 'RcHm_v2.0_Chr4g0390371' => 'rch', 'RcHm_v2.0_Chr4g0390381' => 'rch', 'RcHm_v2.0_Chr4g0390491' => 'rch', 'RcHm_v2.0_Chr4g0390501' => 'rch', 'RcHm_v2.0_Chr6g0289231' => 'rch', 'Rhsim04G0190400' => 'rsi', 'Rhsim04G0190500' => 'rsi', 'Rhsim04G0190600' => 'rsi', 'Rhsim13G0031400' => 'rsi', 'Rhsim13G0165600' => 'rsi', 'RhsimUnG0114600' => 'rsi', 'RhsimUnG0114700' => 'rsi', 'Sabra02G0034800' => 'sbr', 'Sabra02G0035100' => 'sbr', 'Sabra05G0168600' => 'sbr', 'Sabra05G0168800' => 'sbr', 'Sabra08G0123700' => 'sbr', 'Sabra10G0031900' => 'sbr', 'Sabra13G0039000' => 'sbr', 'SalBow2G0782' => 'sbo', 'SalBow2G1403' => 'sbo', 'SalBow4G0074' => 'sbo', 'SalBow4G2635' => 'sbo', 'SalBow5G3010' => 'sbo', 'Sc05g0000870' => 'sci', 'Sc05g0000890' => 'sci', 'Sc13g0005000' => 'sci', 'Sc13g0005030' => 'sci', 'Sc19g0003790' => 'sci', 'Sc19g0003800' => 'sci', 'Sed0003467' => 'sed', 'Sed0009355' => 'sed', 'Sed0009894' => 'sed', 'Sed0011972' => 'sed', 'Sed0021483' => 'sed', 'Sed0021750' => 'sed', 'Sed0026279' => 'sed', 'SEGI_05312' => 'sgi', 'SEGI_10112' => 'sgi', 'SEGI_15835' => 'sgi', 'SEGI_30386' => 'sgi', 'SEGI_34122' => 'sgi', 'SEGI_35063' => 'sgi', 'SGA_v2.0_scaffold101G29794' => 'sas', 'SGA_v2.0_scaffold1G00573' => 'sas', 'SGA_v2.0_scaffold79G25637' => 'sas', 'SGA_v2.0_scaffold88G27283' => 'sas', 'SGA_v2.0_scaffold88G27285' => 'sas', 'SGA_v2.0_scaffold88G27331' => 'sas', 'SHI09937' => 'shi', 'SMO119G0302' => 'smo', 'SMO137G0231' => 'smo', 'SMO367G1151' => 'smo', 'Solyc02g082000.3' => 'sly', 'Solyc06g031670.3' => 'sly', 'Solyc06g053810.3' => 'sly', 'Solyc07g025457.1' => 'sly', 'Solyc08g059740.1' => 'sly', 'Solyc08g059750.3' => 'sly', 'Solyc09g083370.3' => 'sly', 'Solyc12g038950.3' => 'sly', 'Sopen02g026630' => 'spe', 'Sopen06g018930' => 'spe', 'Sopen06g018940' => 'spe', 'Sopen08g009460' => 'spe', 'Sopen09g032290' => 'spe', 'Sp1g03080' => 'spa', 'Sp1g03090' => 'spa', 'Sp1g05480' => 'spa', 'Sp2g07860' => 'spa', 'Sp2g08430' => 'spa', 'Sp2g08440' => 'spa', 'Sp2g26200' => 'spa', 'Sp4g13170' => 'spa', 'Sp6g33840' => 'spa', 'SpUn1204_0010' => 'spa', 'TAR365G0908' => 'tar', 'TAR381G1270' => 'tar', 'TAR381G1651' => 'tar', 'TAR625G1131' => 'tar', 'TAR633G0962' => 'tar', 'TAR633G1729' => 'tar', 'TAR633G1864' => 'tar', 'TAR636G0221' => 'tar', 'TAR636G0314' => 'tar', 'TAR636G3202' => 'tar', 'THA.LOC104800805' => 'tha', 'THA.LOC104801096' => 'tha', 'THA.LOC104801555' => 'tha', 'THA.LOC104808491' => 'tha', 'THA.LOC104808595' => 'tha', 'THA.LOC104815985' => 'tha', 'THA.LOC104822250' => 'tha', 'THA.LOC104826071' => 'tha', 'Thecc.01G265200' => 'tca', 'Thecc.01G265300' => 'tca', 'Thecc.01G265700' => 'tca', 'Thecc.03G109100' => 'tca', 'Thecc.04G245900' => 'tca', 'Thecc.04G246000' => 'tca', 'Thhalv10003334m.g' => 'esa', 'Thhalv10005508m.g' => 'esa', 'Thhalv10005643m.g' => 'esa', 'Thhalv10007316m.g' => 'esa', 'Thhalv10009006m.g' => 'esa', 'Thhalv10009309m.g' => 'esa', 'Thhalv10014917m.g' => 'esa', 'Thhalv10014919m.g' => 'esa', 'Thhalv10015393m.g' => 'esa', 'Thhalv10016515m.g' => 'esa', 'Thhalv10029242m.g' => 'esa', 'TPR.G16654' => 'tpr', 'TPR.G20589' => 'tpr', 'TPR.G23029' => 'tpr', 'TPR.G27731' => 'tpr', 'TPR.G28889' => 'tpr', 'TPR.G28899' => 'tpr', 'TPR.G30846' => 'tpr', 'TPR.G5452' => 'tpr', 'TPR.G5713' => 'tpr', 'TPR.G9046' => 'tpr', 'TPR.G9061' => 'tpr', 'TWI09G1075' => 'twi', 'TWI12G0806' => 'twi', 'TWI18G0108' => 'twi', 'TWI53G1361' => 'twi', 'TWI73G0185' => 'twi', 'TWI73G0427' => 'twi', 'unitig_37.g12001' => 'ugi', 'unitig_747.g21660' => 'ugi', 'unitig_748.g7232' => 'ugi', 'unitig_748.g7315' => 'ugi', 'unitig_85.g27262' => 'ugi', 'unitig_92.g28220' => 'ugi', 'vmacro02632' => 'vma', 'vmacro08410' => 'vma', 'vmacro08411' => 'vma', 'vmacro15407' => 'vma', 'VMungo0251G3619' => 'vmu', 'VMungo0720G1204' => 'vmu', 'VMungo0720G1918' => 'vmu', 'VMungo0720G2387' => 'vmu', 'VMungo0720G2961' => 'vmu', 'VMungo1215G2154' => 'vmu', 'VMungo1383G2411' => 'vmu', 'Zm00001eb051130' => 'zma', 'Zm00001eb116830' => 'zma', 'Zm00001eb116850' => 'zma', 'Zm00001eb151740' => 'zma', 'Zm00001eb292360' => 'zma', 'Zm00001eb301640' => 'zma' ) $gf_id = 'HOM05D000856' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000856' ) $data_identifier = 'HOM05D000856' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 13, 'ath' => (int) 10, 'atr' => (int) 1, 'acertr' => (int) 8, 'cqu' => (int) 6, 'bca' => (int) 21, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 11, 'car' => (int) 9, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 8, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 5, 'fan' => (int) 16, 'fve' => (int) 6, 'gma' => (int) 11, 'ghi' => (int) 19, 'gra' => (int) 9, 'vvi' => (int) 7, 'han' => (int) 17, 'cav' => (int) 5, 'hma' => (int) 2, 'vpl' => (int) 2, 'sun' => (int) 7, 'lal' => (int) 9, 'lja' => (int) 5, 'lonja' => (int) 9, 'lsa' => (int) 5, 'mes' => (int) 8, 'mpo' => (int) 3, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 10, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 15, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 9, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 9, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 6, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 5, 'spa' => (int) 10, 'tar' => (int) 10, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 11, 'tpr' => (int) 11, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 4, 'vmu' => (int) 7, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb301640' $species_info = array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ) $local_species = 'pvu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000856', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p00010' => 'bna', 'A03p04160' => 'bna', 'A03p17160' => 'bna', 'A04p23370' => 'bna', 'A05p14860' => 'bna', 'A08p37020' => 'bna', 'A09p08050' => 'bna', 'A09p66800' => 'bna', 'A09p67940' => 'bna', 'A10p02680' => 'bna', 'A10p05320' => 'bna', 'Aa31LG1G20560' => 'aar', 'Aa31LG1G20610' => 'aar', 'Aa31LG1G7810' => 'aar', 'Aa31LG5G3590' => 'aar', 'Aa31LG5G6140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3819' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4683' => 'aag', 'Actinidia04480' => 'ach', 'Actinidia05466' => 'ach', 'Actinidia08445' => 'ach', 'Actinidia21170' => 'ach', 'Actinidia24812' => 'ach', 'Actinidia24951' => 'ach', 'Actinidia40088' => 'ach', 'Ah.02g111660' => 'amhyb', 'Ah.11g048900' => 'amhyb', 'Ah.11g049910' => 'amhyb', 'AL1G13870' => 'aly', 'AL1G13880' => 'aly', 'AL1G16760' => 'aly', 'AL390U10020' => 'aly', 'AL4G25520' => 'aly', 'AL6G19890' => 'aly', 'AL6G19900' => 'aly', 'AL6G19910' => 'aly', 'AL8G40100' => 'aly', 'Aqoxy2G03562' => 'aox', 'Aqoxy5G00316' => 'aox', 'Aqoxy5G00926' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1628KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1H403S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2FU6SJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.882I6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8YRY2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YN1SN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AF70II' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZA8L1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F916KL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHRD8H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KTZ8QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S22EMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8M29T' => 'arhy', 'AT1G04270' => 'ath', 'AT1G04280' => 'ath', 'AT1G06750' => 'ath', 'AT1G33850' => 'ath', 'AT2G30630' => 'ath', 'AT5G09490' => 'ath', 'AT5G09500' => 'ath', 'AT5G09510' => 'ath', 'AT5G43640' => 'ath', 'AT5G63070' => 'ath', 'ATR0605G315' => 'atr', 'Atru.chr11.175' => 'acertr', 'Atru.chr11.653' => 'acertr', 'Atru.chr3.1616' => 'acertr', 'Atru.chr4.2230' => 'acertr', 'Atru.chr4.2232' => 'acertr', 'Atru.chr5.1598' => 'acertr', 'Atru.chr5.1600' => 'acertr', 'Atru.chr5.2188' => 'acertr', 'AUR62008326' => 'cqu', 'AUR62011922' => 'cqu', 'AUR62011924' => 'cqu', 'AUR62021771' => 'cqu', 'AUR62032237' => 'cqu', 'AUR62032240' => 'cqu', 'BcaB01g05572' => 'bca', 'BcaB02g10337' => 'bca', 'BcaB04g19944' => 'bca', 'BcaB05g21548' => 'bca', 'BcaB05g21549' => 'bca', 'BcaB05g23227' => 'bca', 'BcaB06g26256' => 'bca', 'BcaB06g26257' => 'bca', 'BcaB06g28379' => 'bca', 'BcaC02g11159' => 'bca', 'BcaC03g13258' => 'bca', 'BcaC03g13259' => 'bca', 'BcaC05g24456' => 'bca', 'BcaC05g24457' => 'bca', 'BcaC07g36922' => 'bca', 'BcaC07g36923' => 'bca', 'BcaC07g42050' => 'bca', 'BcaC07g42176' => 'bca', 'BcaC07g42195' => 'bca', 'BcaC07g42196' => 'bca', 'BcaNung06674' => 'bca', 'BolC2t06351H' => 'bol', 'BolC2t06352H' => 'bol', 'BolC3t12993H' => 'bol', 'BolC4t23525H' => 'bol', 'BolC4t27475H' => 'bol', 'BolC5t29025H' => 'bol', 'BolC5t29026H' => 'bol', 'BolC8t46898H' => 'bol', 'BolC8t46899H' => 'bol', 'BolC8t52630H' => 'bol', 'BolC8t52765H' => 'bol', 'BolC9t53824H' => 'bol', 'BraA03t09760Z' => 'bra', 'BraA03t10990Z' => 'bra', 'BraA05t20413Z' => 'bra', 'BraA08t35602Z' => 'bra', 'BraA09t36458Z' => 'bra', 'BraA09t42018Z' => 'bra', 'BraA09t42129Z' => 'bra', 'BraA10t42536Z' => 'bra', 'BraA10t42537Z' => 'bra', 'C01p10690' => 'bna', 'C02p03890' => 'bna', 'C02p03900' => 'bna', 'C03p04620' => 'bna', 'C04p19870' => 'bna', 'C04p59670' => 'bna', 'C05p02460' => 'bna', 'C05p02470' => 'bna', 'C08p00980' => 'bna', 'C08p00990' => 'bna', 'C08p51030' => 'bna', 'C08p52360' => 'bna', 'C09p09120' => 'bna', 'CAN.G19.15' => 'can', 'CAN.G251.10' => 'can', 'CAN.G251.9' => 'can', 'CAN.G398.24' => 'can', 'CAN.G410.32' => 'can', 'CAN.G881.2' => 'can', 'CANSAT01G3025' => 'cansat', 'CANSAT78G1211' => 'cansat', 'CANSAT78G1218' => 'cansat', 'CANSAT78G1521' => 'cansat', 'CANSAT78G1670' => 'cansat', 'CARHR003600' => 'chi', 'CARHR003610' => 'chi', 'CARHR006290' => 'chi', 'CARHR006430' => 'chi', 'CARHR124110' => 'chi', 'CARHR203870' => 'chi', 'CARHR203880' => 'chi', 'CARHR203890' => 'chi', 'CARHR276880' => 'chi', 'Carub.0001s0346' => 'cru', 'Carub.0001s0347' => 'cru', 'Carub.0001s0607' => 'cru', 'Carub.0003s2768' => 'cru', 'Carub.0003s2769' => 'cru', 'Carub.0004s1178' => 'cru', 'Carub.0006s0806' => 'cru', 'Carub.0006s0807' => 'cru', 'Carub.0006s0808' => 'cru', 'Carub.0008s0501' => 'cru', 'Carub.0008s2379' => 'cru', 'Ca_08655_v3' => 'car', 'Ca_08922_v3' => 'car', 'Ca_08923_v3' => 'car', 'Ca_09119_v3' => 'car', 'Ca_09703_v3' => 'car', 'Ca_09705_v3' => 'car', 'Ca_09835_v3' => 'car', 'Ca_26403_v3' => 'car', 'Ca_30719_v3' => 'car', 'CBR_g17958' => 'cbr', 'CBR_g40516' => 'cbr', 'Cc00_g05350' => 'ccan', 'Cc01_g18690' => 'ccan', 'Cc03_g04830' => 'ccan', 'Cc03_g04850' => 'ccan', 'CDE02G4469' => 'cde', 'CDE06G0883' => 'cde', 'CDE06G1295' => 'cde', 'CDE06G1390' => 'cde', 'CDE07G0584' => 'cde', 'CDE07G1084' => 'cde', 'CDE08G1259' => 'cde', 'Cfa002341' => 'cfa', 'Cfa024337' => 'cfa', 'Ciclev10004749m.g' => 'ccl', 'Ciclev10006127m.g' => 'ccl', 'Ciclev10019720m.g' => 'ccl', 'Ciclev10022652m.g' => 'ccl', 'CiPaw.01G190400' => 'cil', 'CiPaw.01G190500' => 'cil', 'CiPaw.02G116400' => 'cil', 'CiPaw.02G116500' => 'cil', 'CiPaw.04G183000' => 'cil', 'CiPaw.04G183300' => 'cil', 'ClCG05G004610' => 'cla', 'ClCG05G004620' => 'cla', 'ClCG06G006730' => 'cla', 'ClCG06G006740' => 'cla', 'ClCG11G003690' => 'cla', 'COL.COLO4_08276' => 'col', 'COL.COLO4_08277' => 'col', 'COL.COLO4_15787' => 'col', 'COL.COLO4_15789' => 'col', 'Cpa.g.c44815' => 'cpa', 'Cpa.g.sc52.144' => 'cpa', 'Cpa.g.sc58.46' => 'cpa', 'Cpa.g.sc58.47' => 'cpa', 'Cre08.g360900' => 'cre', 'CsaV3_2G013030' => 'csa', 'CsaV3_2G013050' => 'csa', 'CsaV3_2G015620' => 'csa', 'CsaV3_3G012590' => 'csa', 'CsaV3_3G012600' => 'csa', 'CSS0001641' => 'camsi', 'CSS0008310' => 'camsi', 'CSS0013011' => 'camsi', 'CSS0017147' => 'camsi', 'CSS0022970' => 'camsi', 'CSS0025655' => 'camsi', 'CSS0028665' => 'camsi', 'CSS0029117' => 'camsi', 'CSS0032024' => 'camsi', 'CSS0039681' => 'camsi', 'CSS0046516' => 'camsi', 'CSS0050307' => 'camsi', 'DCAR_005871' => 'dca', 'DCAR_007342' => 'dca', 'DCAR_024228' => 'dca', 'DCAR_027277' => 'dca', 'DCAR_030718' => 'dca', 'Dinv20287' => 'din', 'Dinv22461' => 'din', 'Dinv22464' => 'din', 'Dinv29912' => 'din', 'Dinv29913' => 'din', 'Dinv34580' => 'din', 'Dinv34582' => 'din', 'Dinv44632' => 'din', 'Duzib052G0266' => 'dzi', 'Duzib133G0907' => 'dzi', 'Duzib133G1034' => 'dzi', 'Duzib138G0207' => 'dzi', 'Duzib138G0491' => 'dzi', 'Duzib151G0812' => 'dzi', 'Duzib151G1166' => 'dzi', 'Duzib168G0192' => 'dzi', 'Duzib211G0077' => 'dzi', 'Duzib212G0429' => 'dzi', 'Duzib212G0472' => 'dzi', 'ECA233G2617' => 'eca', 'ECA236G4188' => 'eca', 'ECA240G0936' => 'eca', 'ECA240G1129' => 'eca', 'ECA247G0623' => 'eca', 'EL10Ac5g10451' => 'bvu', 'EL10Ac5g10453' => 'bvu', 'EL10Ac5g10894' => 'bvu', 'Eucgr.H00192' => 'egr', 'Eucgr.H00193' => 'egr', 'Eucgr.H00194' => 'egr', 'Eucgr.J01562' => 'egr', 'Eucgr.K03301' => 'egr', 'FAN02G0632' => 'fan', 'FAN05G5378' => 'fan', 'FAN09G3247' => 'fan', 'FAN12G0435' => 'fan', 'FAN12G2426' => 'fan', 'FAN14G1707' => 'fan', 'FAN14G4725' => 'fan', 'FAN15G2071' => 'fan', 'FAN17G3065' => 'fan', 'FAN19G1376' => 'fan', 'FAN20G0354' => 'fan', 'FAN20G2429' => 'fan', 'FAN20G2658' => 'fan', 'FAN24G2343' => 'fan', 'FAN27G2362' => 'fan', 'FAN28G1765' => 'fan', 'FvH4_1g16020' => 'fve', 'FvH4_2g04890' => 'fve', 'FvH4_2g22270' => 'fve', 'FvH4_4g02630' => 'fve', 'FvH4_4g02640' => 'fve', 'FvH4_6g02650' => 'fve', 'Glyma.02G140600' => 'gma', 'Glyma.03G159900' => 'gma', 'Glyma.05G234800' => 'gma', 'Glyma.07G269600' => 'gma', 'Glyma.08G042300' => 'gma', 'Glyma.10G033500' => 'gma', 'Glyma.10G185200' => 'gma', 'Glyma.17G004300' => 'gma', 'Glyma.19G161900' => 'gma', 'Glyma.20G205100' => 'gma', 'Glyma.20G205200' => 'gma', 'Gohir.A01G139101' => 'ghi', 'Gohir.A02G035600' => 'ghi', 'Gohir.A02G117901' => 'ghi', 'Gohir.A07G210100' => 'ghi', 'Gohir.A07G210200' => 'ghi', 'Gohir.A08G061100' => 'ghi', 'Gohir.A09G223000' => 'ghi', 'Gohir.A09G223100' => 'ghi', 'Gohir.A10G113900' => 'ghi', 'Gohir.A10G114000' => 'ghi', 'Gohir.D02G042300' => 'ghi', 'Gohir.D07G216100' => 'ghi', 'Gohir.D07G216200' => 'ghi', 'Gohir.D08G070400' => 'ghi', 'Gohir.D09G225000' => 'ghi', 'Gohir.D09G225100' => 'ghi', 'Gohir.D10G152300' => 'ghi', 'Gohir.D10G153200' => 'ghi', 'Gohir.D11G133701' => 'ghi', 'Gorai.004G074100' => 'gra', 'Gorai.005G046800' => 'gra', 'Gorai.006G246500' => 'gra', 'Gorai.006G246600' => 'gra', 'Gorai.007G142900' => 'gra', 'Gorai.011G171000' => 'gra', 'Gorai.011G171100' => 'gra', 'Gorai.013G104300' => 'gra', 'Gorai.013G104400' => 'gra', 'GSVIVG01000754001' => 'vvi', 'GSVIVG01000756001' => 'vvi', 'GSVIVG01010903001' => 'vvi', 'GSVIVG01017623001' => 'vvi', 'GSVIVG01018113001' => 'vvi', 'GSVIVG01018116001' => 'vvi', 'GSVIVG01018118001' => 'vvi', 'HanXRQChr03g0076211' => 'han', 'HanXRQChr03g0092431' => 'han', 'HanXRQChr03g0092441' => 'han', 'HanXRQChr03g0092591' => 'han', 'HanXRQChr03g0092671' => 'han', 'HanXRQChr03g0092681' => 'han', 'HanXRQChr03g0092691' => 'han', 'HanXRQChr03g0092701' => 'han', 'HanXRQChr03g0092721' => 'han', 'HanXRQChr03g0092731' => 'han', 'HanXRQChr04g0113681' => 'han', 'HanXRQChr10g0281371' => 'han', 'HanXRQChr11g0337141' => 'han', 'HanXRQChr13g0424521' => 'han', 'HanXRQChr13g0424531' => 'han', 'HanXRQChr13g0424541' => 'han', 'HanXRQChr16g0498221' => 'han', 'Haze_04377' => 'cav', 'Haze_11298' => 'cav', 'Haze_24547' => 'cav', 'Haze_24550' => 'cav', 'Haze_26587' => 'cav', 'Hma1.2p1_0650F.1_g195410' => 'hma', 'Hma1.2p1_0893F.1_g233470' => 'hma', 'HPP92_006508' => 'vpl', 'HPP92_024780' => 'vpl', 'Hund02688' => 'sun', 'Hund09380' => 'sun', 'Hund09381' => 'sun', 'Hund09832' => 'sun', 'Hund09833' => 'sun', 'Hund11351' => 'sun', 'Hund11513' => 'sun', 'Lalb_Chr06g0162591' => 'lal', 'Lalb_Chr06g0162601' => 'lal', 'Lalb_Chr06g0169321' => 'lal', 'Lalb_Chr09g0330951' => 'lal', 'Lalb_Chr16g0387631' => 'lal', 'Lalb_Chr21g0306241' => 'lal', 'Lalb_Chr25g0290051' => 'lal', 'Lalb_Chr25g0290061' => 'lal', 'Lalb_Chr25g0290071' => 'lal', 'Lj1g0003876' => 'lja', 'Lj1P1207T36' => 'lonja', 'Lj2C1156G12' => 'lonja', 'Lj3A793G39' => 'lonja', 'Lj3C580G2' => 'lonja', 'Lj3C780G2' => 'lonja', 'Lj3C780T4' => 'lonja', 'Lj3C793G9' => 'lonja', 'Lj4g0012960' => 'lja', 'Lj5g0021252' => 'lja', 'Lj5g0021484' => 'lja', 'Lj5g0024528' => 'lja', 'Lj6A399T12' => 'lonja', 'Lj6A656G65' => 'lonja', 'Lsat_1_v5_gn_3_125500' => 'lsa', 'Lsat_1_v5_gn_3_125540' => 'lsa', 'Lsat_1_v5_gn_5_72701' => 'lsa', 'Lsat_1_v5_gn_8_91560' => 'lsa', 'Lsat_1_v5_gn_9_9640' => 'lsa', 'Manes.01G200600' => 'mes', 'Manes.01G200700' => 'mes', 'Manes.03G168900' => 'mes', 'Manes.03G169000' => 'mes', 'Manes.05G085801' => 'mes', 'Manes.05G086200' => 'mes', 'Manes.15G036700' => 'mes', 'Manes.15G036900' => 'mes', 'Mapoly0004s0172' => 'mpo', 'Mapoly0023s0001' => 'mpo', 'Mapoly0142s0012' => 'mpo', 'MBI01_g32854_MAGBIO' => 'mbi', 'MBI11_g24427_MAGBIO' => 'mbi', 'MBI11_g47319_MAGBIO' => 'mbi', 'MCO01G433' => 'mco', 'MD00G1187800' => 'mdo', 'MD04G1226500' => 'mdo', 'MD05G1203900' => 'mdo', 'MD10G1191100' => 'mdo', 'MD12G1243500' => 'mdo', 'MD13G1207000' => 'mdo', 'MD13G1207100' => 'mdo', 'MD16G1208600' => 'mdo', 'Medtr1g050352' => 'mtr', 'Medtr1g070385' => 'mtr', 'Medtr1g070450' => 'mtr', 'Medtr1g075200' => 'mtr', 'Medtr1g075250' => 'mtr', 'Medtr1g075260' => 'mtr', 'Medtr1g475250' => 'mtr', 'Medtr4g075450' => 'mtr', 'Medtr7g096300' => 'mtr', 'Medtr8g105110' => 'mtr', 'MELO3C006470.2' => 'cme', 'MELO3C006471.2' => 'cme', 'MELO3C020772.2' => 'cme', 'MELO3C026780.2' => 'cme', 'MELO3C026781.2' => 'cme', 'Migut.D00390' => 'egut', 'Migut.G00435' => 'egut', 'Migut.G00436' => 'egut', 'Migut.G00718' => 'egut', 'MSTRG.21891' => 'ama', 'MSTRG.26910' => 'ama', 'MSTRG.4099' => 'ama', 'MSTRG.9925' => 'ama', 'Nitab4.5_0000165g0010' => 'nta', 'Nitab4.5_0000209g0180' => 'nta', 'Nitab4.5_0000244g0440' => 'nta', 'Nitab4.5_0000525g0220' => 'nta', 'Nitab4.5_0001597g0020' => 'nta', 'Nitab4.5_0001878g0040' => 'nta', 'Nitab4.5_0001878g0060' => 'nta', 'Nitab4.5_0002838g0100' => 'nta', 'Nitab4.5_0002838g0120' => 'nta', 'Nitab4.5_0004798g0030' => 'nta', 'Nitab4.5_0005420g0010' => 'nta', 'Nitab4.5_0005507g0010' => 'nta', 'Nitab4.5_0005574g0020' => 'nta', 'Nitab4.5_0005838g0010' => 'nta', 'Nitab4.5_0010580g0020' => 'nta', 'Nn1g02599' => 'nnu', 'Nn1g02608' => 'nnu', 'Nn3g17742' => 'nnu', 'Nn3g19534' => 'nnu', 'Nn3g19535' => 'nnu', 'Oeu008790.1' => 'oeu', 'Oeu008792.1' => 'oeu', 'Oeu032590.1' => 'oeu', 'Oeu035349.1' => 'oeu', 'Oeu049791.1' => 'oeu', 'Os01g0774500' => 'osa', 'Os03g0628800' => 'osa', 'Os03g0798600' => 'osa', 'Os05g0508800' => 'osa', 'Peaxi162Scf00036g02018' => 'pax', 'Peaxi162Scf00578g00032' => 'pax', 'Peaxi162Scf00578g00317' => 'pax', 'Peaxi162Scf00785g00114' => 'pax', 'Peaxi162Scf00813g00119' => 'pax', 'Peaxi162Scf00906g00227' => 'pax', 'PGR004G0875' => 'pgr', 'PGR004G2424' => 'pgr', 'PGR031G1239' => 'pgr', 'PGR031G2474' => 'pgr', 'PGR044G0423' => 'pgr', 'PGSC0003DMG400001128' => 'stu', 'PGSC0003DMG400007336' => 'stu', 'PGSC0003DMG400016318' => 'stu', 'PGSC0003DMG400016319' => 'stu', 'PGSC0003DMG400018074' => 'stu', 'Phvul.001G157700' => 'pvu', 'Phvul.002G148550' => 'pvu', 'Phvul.002G320200' => 'pvu', 'Phvul.003G089200' => 'pvu', 'Phvul.007G126000' => 'pvu', 'Phvul.007G126100' => 'pvu', 'Phvul.007G178000' => 'pvu', 'Phvul.007G178200' => 'pvu', 'Potri.002G043000' => 'ptr', 'Potri.002G043200' => 'ptr', 'Potri.003G123750' => 'ptr', 'Potri.005G055401' => 'ptr', 'Potri.005G219700' => 'ptr', 'Potri.005G220000' => 'ptr', 'Potri.008G161901' => 'ptr', 'Potri.008G162000' => 'ptr', 'Potri.008G162400' => 'ptr', 'Potri.010G076900' => 'ptr', 'Pp3c12_9180' => 'ppa', 'Pp3c13_19770' => 'ppa', 'Pp3c14_22950' => 'ppa', 'Pp3c16_12160' => 'ppa', 'Pp3c27_7820' => 'ppa', 'Pp3c2_3490' => 'ppa', 'Pp3c3_23700' => 'ppa', 'Pp3c3_36520' => 'ppa', 'Pp3c4_15250' => 'ppa', 'PRCOL_00007002' => 'pco', 'Prupe.1G030600' => 'ppe', 'Prupe.1G030700' => 'ppe', 'Prupe.6G345200' => 'ppe', 'Prupe.8G230300' => 'ppe', 'Prupe.8G230500' => 'ppe', 'Psat3g059600' => 'psa', 'Psat5g200920' => 'psa', 'Psat6g056440' => 'psa', 'Psat6g057360' => 'psa', 'Psat6g134120' => 'psa', 'Psat6g134160' => 'psa', 'Psat7g008640' => 'psa', 'Psat7g185240' => 'psa', 'PSO017G1330' => 'pso', 'PSO063G6097' => 'pso', 'PSO170G0835' => 'pso', 'PSO170G2499' => 'pso', 'PSO210G5058' => 'pso', 'PSO210G6154' => 'pso', 'PSO585G0031' => 'pso', 'PSO832G0264' => 'pso', 'PSO832G4288' => 'pso', 'QL03p027355' => 'qlo', 'QL03p027430' => 'qlo', 'QL04p081380' => 'qlo', 'QL06p015642' => 'qlo', 'QL06p015650' => 'qlo', 'QL06p015686' => 'qlo', 'QL12p042927' => 'qlo', 'QL93p1863_0035' => 'qlo', 'RcHm_v2.0_Chr3g0450581' => 'rch', 'RcHm_v2.0_Chr4g0390371' => 'rch', 'RcHm_v2.0_Chr4g0390381' => 'rch', 'RcHm_v2.0_Chr4g0390491' => 'rch', 'RcHm_v2.0_Chr4g0390501' => 'rch', 'RcHm_v2.0_Chr6g0289231' => 'rch', 'Rhsim04G0190400' => 'rsi', 'Rhsim04G0190500' => 'rsi', 'Rhsim04G0190600' => 'rsi', 'Rhsim13G0031400' => 'rsi', 'Rhsim13G0165600' => 'rsi', 'RhsimUnG0114600' => 'rsi', 'RhsimUnG0114700' => 'rsi', 'Sabra02G0034800' => 'sbr', 'Sabra02G0035100' => 'sbr', 'Sabra05G0168600' => 'sbr', 'Sabra05G0168800' => 'sbr', 'Sabra08G0123700' => 'sbr', 'Sabra10G0031900' => 'sbr', 'Sabra13G0039000' => 'sbr', 'SalBow2G0782' => 'sbo', 'SalBow2G1403' => 'sbo', 'SalBow4G0074' => 'sbo', 'SalBow4G2635' => 'sbo', 'SalBow5G3010' => 'sbo', 'Sc05g0000870' => 'sci', 'Sc05g0000890' => 'sci', 'Sc13g0005000' => 'sci', 'Sc13g0005030' => 'sci', 'Sc19g0003790' => 'sci', 'Sc19g0003800' => 'sci', 'Sed0003467' => 'sed', 'Sed0009355' => 'sed', 'Sed0009894' => 'sed', 'Sed0011972' => 'sed', 'Sed0021483' => 'sed', 'Sed0021750' => 'sed', 'Sed0026279' => 'sed', 'SEGI_05312' => 'sgi', 'SEGI_10112' => 'sgi', 'SEGI_15835' => 'sgi', 'SEGI_30386' => 'sgi', 'SEGI_34122' => 'sgi', 'SEGI_35063' => 'sgi', 'SGA_v2.0_scaffold101G29794' => 'sas', 'SGA_v2.0_scaffold1G00573' => 'sas', 'SGA_v2.0_scaffold79G25637' => 'sas', 'SGA_v2.0_scaffold88G27283' => 'sas', 'SGA_v2.0_scaffold88G27285' => 'sas', 'SGA_v2.0_scaffold88G27331' => 'sas', 'SHI09937' => 'shi', 'SMO119G0302' => 'smo', 'SMO137G0231' => 'smo', 'SMO367G1151' => 'smo', 'Solyc02g082000.3' => 'sly', 'Solyc06g031670.3' => 'sly', 'Solyc06g053810.3' => 'sly', 'Solyc07g025457.1' => 'sly', 'Solyc08g059740.1' => 'sly', 'Solyc08g059750.3' => 'sly', 'Solyc09g083370.3' => 'sly', 'Solyc12g038950.3' => 'sly', 'Sopen02g026630' => 'spe', 'Sopen06g018930' => 'spe', 'Sopen06g018940' => 'spe', 'Sopen08g009460' => 'spe', 'Sopen09g032290' => 'spe', 'Sp1g03080' => 'spa', 'Sp1g03090' => 'spa', 'Sp1g05480' => 'spa', 'Sp2g07860' => 'spa', 'Sp2g08430' => 'spa', 'Sp2g08440' => 'spa', 'Sp2g26200' => 'spa', 'Sp4g13170' => 'spa', 'Sp6g33840' => 'spa', 'SpUn1204_0010' => 'spa', 'TAR365G0908' => 'tar', 'TAR381G1270' => 'tar', 'TAR381G1651' => 'tar', 'TAR625G1131' => 'tar', 'TAR633G0962' => 'tar', 'TAR633G1729' => 'tar', 'TAR633G1864' => 'tar', 'TAR636G0221' => 'tar', 'TAR636G0314' => 'tar', 'TAR636G3202' => 'tar', 'THA.LOC104800805' => 'tha', 'THA.LOC104801096' => 'tha', 'THA.LOC104801555' => 'tha', 'THA.LOC104808491' => 'tha', 'THA.LOC104808595' => 'tha', 'THA.LOC104815985' => 'tha', 'THA.LOC104822250' => 'tha', 'THA.LOC104826071' => 'tha', 'Thecc.01G265200' => 'tca', 'Thecc.01G265300' => 'tca', 'Thecc.01G265700' => 'tca', 'Thecc.03G109100' => 'tca', 'Thecc.04G245900' => 'tca', 'Thecc.04G246000' => 'tca', 'Thhalv10003334m.g' => 'esa', 'Thhalv10005508m.g' => 'esa', 'Thhalv10005643m.g' => 'esa', 'Thhalv10007316m.g' => 'esa', 'Thhalv10009006m.g' => 'esa', 'Thhalv10009309m.g' => 'esa', 'Thhalv10014917m.g' => 'esa', 'Thhalv10014919m.g' => 'esa', 'Thhalv10015393m.g' => 'esa', 'Thhalv10016515m.g' => 'esa', 'Thhalv10029242m.g' => 'esa', 'TPR.G16654' => 'tpr', 'TPR.G20589' => 'tpr', 'TPR.G23029' => 'tpr', 'TPR.G27731' => 'tpr', 'TPR.G28889' => 'tpr', 'TPR.G28899' => 'tpr', 'TPR.G30846' => 'tpr', 'TPR.G5452' => 'tpr', 'TPR.G5713' => 'tpr', 'TPR.G9046' => 'tpr', 'TPR.G9061' => 'tpr', 'TWI09G1075' => 'twi', 'TWI12G0806' => 'twi', 'TWI18G0108' => 'twi', 'TWI53G1361' => 'twi', 'TWI73G0185' => 'twi', 'TWI73G0427' => 'twi', 'unitig_37.g12001' => 'ugi', 'unitig_747.g21660' => 'ugi', 'unitig_748.g7232' => 'ugi', 'unitig_748.g7315' => 'ugi', 'unitig_85.g27262' => 'ugi', 'unitig_92.g28220' => 'ugi', 'vmacro02632' => 'vma', 'vmacro08410' => 'vma', 'vmacro08411' => 'vma', 'vmacro15407' => 'vma', 'VMungo0251G3619' => 'vmu', 'VMungo0720G1204' => 'vmu', 'VMungo0720G1918' => 'vmu', 'VMungo0720G2387' => 'vmu', 'VMungo0720G2961' => 'vmu', 'VMungo1215G2154' => 'vmu', 'VMungo1383G2411' => 'vmu', 'Zm00001eb051130' => 'zma', 'Zm00001eb116830' => 'zma', 'Zm00001eb116850' => 'zma', 'Zm00001eb151740' => 'zma', 'Zm00001eb292360' => 'zma', 'Zm00001eb301640' => 'zma' ), 'gf_id' => 'HOM05D000856', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000856' ), 'data_identifier' => 'HOM05D000856', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000856', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p00010' => 'bna', 'A03p04160' => 'bna', 'A03p17160' => 'bna', 'A04p23370' => 'bna', 'A05p14860' => 'bna', 'A08p37020' => 'bna', 'A09p08050' => 'bna', 'A09p66800' => 'bna', 'A09p67940' => 'bna', 'A10p02680' => 'bna', 'A10p05320' => 'bna', 'Aa31LG1G20560' => 'aar', 'Aa31LG1G20610' => 'aar', 'Aa31LG1G7810' => 'aar', 'Aa31LG5G3590' => 'aar', 'Aa31LG5G6140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3819' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4683' => 'aag', 'Actinidia04480' => 'ach', 'Actinidia05466' => 'ach', 'Actinidia08445' => 'ach', 'Actinidia21170' => 'ach', 'Actinidia24812' => 'ach', 'Actinidia24951' => 'ach', 'Actinidia40088' => 'ach', 'Ah.02g111660' => 'amhyb', 'Ah.11g048900' => 'amhyb', 'Ah.11g049910' => 'amhyb', 'AL1G13870' => 'aly', 'AL1G13880' => 'aly', 'AL1G16760' => 'aly', 'AL390U10020' => 'aly', 'AL4G25520' => 'aly', 'AL6G19890' => 'aly', 'AL6G19900' => 'aly', 'AL6G19910' => 'aly', 'AL8G40100' => 'aly', 'Aqoxy2G03562' => 'aox', 'Aqoxy5G00316' => 'aox', 'Aqoxy5G00926' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1628KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1H403S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2FU6SJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.882I6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8YRY2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YN1SN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AF70II' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZA8L1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F916KL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHRD8H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KTZ8QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S22EMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8M29T' => 'arhy', 'AT1G04270' => 'ath', 'AT1G04280' => 'ath', 'AT1G06750' => 'ath', 'AT1G33850' => 'ath', 'AT2G30630' => 'ath', 'AT5G09490' => 'ath', 'AT5G09500' => 'ath', 'AT5G09510' => 'ath', 'AT5G43640' => 'ath', 'AT5G63070' => 'ath', 'ATR0605G315' => 'atr', 'Atru.chr11.175' => 'acertr', 'Atru.chr11.653' => 'acertr', 'Atru.chr3.1616' => 'acertr', 'Atru.chr4.2230' => 'acertr', 'Atru.chr4.2232' => 'acertr', 'Atru.chr5.1598' => 'acertr', 'Atru.chr5.1600' => 'acertr', 'Atru.chr5.2188' => 'acertr', 'AUR62008326' => 'cqu', 'AUR62011922' => 'cqu', 'AUR62011924' => 'cqu', 'AUR62021771' => 'cqu', 'AUR62032237' => 'cqu', 'AUR62032240' => 'cqu', 'BcaB01g05572' => 'bca', 'BcaB02g10337' => 'bca', 'BcaB04g19944' => 'bca', 'BcaB05g21548' => 'bca', 'BcaB05g21549' => 'bca', 'BcaB05g23227' => 'bca', 'BcaB06g26256' => 'bca', 'BcaB06g26257' => 'bca', 'BcaB06g28379' => 'bca', 'BcaC02g11159' => 'bca', 'BcaC03g13258' => 'bca', 'BcaC03g13259' => 'bca', 'BcaC05g24456' => 'bca', 'BcaC05g24457' => 'bca', 'BcaC07g36922' => 'bca', 'BcaC07g36923' => 'bca', 'BcaC07g42050' => 'bca', 'BcaC07g42176' => 'bca', 'BcaC07g42195' => 'bca', 'BcaC07g42196' => 'bca', 'BcaNung06674' => 'bca', 'BolC2t06351H' => 'bol', 'BolC2t06352H' => 'bol', 'BolC3t12993H' => 'bol', 'BolC4t23525H' => 'bol', 'BolC4t27475H' => 'bol', 'BolC5t29025H' => 'bol', 'BolC5t29026H' => 'bol', 'BolC8t46898H' => 'bol', 'BolC8t46899H' => 'bol', 'BolC8t52630H' => 'bol', 'BolC8t52765H' => 'bol', 'BolC9t53824H' => 'bol', 'BraA03t09760Z' => 'bra', 'BraA03t10990Z' => 'bra', 'BraA05t20413Z' => 'bra', 'BraA08t35602Z' => 'bra', 'BraA09t36458Z' => 'bra', 'BraA09t42018Z' => 'bra', 'BraA09t42129Z' => 'bra', 'BraA10t42536Z' => 'bra', 'BraA10t42537Z' => 'bra', 'C01p10690' => 'bna', 'C02p03890' => 'bna', 'C02p03900' => 'bna', 'C03p04620' => 'bna', 'C04p19870' => 'bna', 'C04p59670' => 'bna', 'C05p02460' => 'bna', 'C05p02470' => 'bna', 'C08p00980' => 'bna', 'C08p00990' => 'bna', 'C08p51030' => 'bna', 'C08p52360' => 'bna', 'C09p09120' => 'bna', 'CAN.G19.15' => 'can', 'CAN.G251.10' => 'can', 'CAN.G251.9' => 'can', 'CAN.G398.24' => 'can', 'CAN.G410.32' => 'can', 'CAN.G881.2' => 'can', 'CANSAT01G3025' => 'cansat', 'CANSAT78G1211' => 'cansat', 'CANSAT78G1218' => 'cansat', 'CANSAT78G1521' => 'cansat', 'CANSAT78G1670' => 'cansat', 'CARHR003600' => 'chi', 'CARHR003610' => 'chi', 'CARHR006290' => 'chi', 'CARHR006430' => 'chi', 'CARHR124110' => 'chi', 'CARHR203870' => 'chi', 'CARHR203880' => 'chi', 'CARHR203890' => 'chi', 'CARHR276880' => 'chi', 'Carub.0001s0346' => 'cru', 'Carub.0001s0347' => 'cru', 'Carub.0001s0607' => 'cru', 'Carub.0003s2768' => 'cru', 'Carub.0003s2769' => 'cru', 'Carub.0004s1178' => 'cru', 'Carub.0006s0806' => 'cru', 'Carub.0006s0807' => 'cru', 'Carub.0006s0808' => 'cru', 'Carub.0008s0501' => 'cru', 'Carub.0008s2379' => 'cru', 'Ca_08655_v3' => 'car', 'Ca_08922_v3' => 'car', 'Ca_08923_v3' => 'car', 'Ca_09119_v3' => 'car', 'Ca_09703_v3' => 'car', 'Ca_09705_v3' => 'car', 'Ca_09835_v3' => 'car', 'Ca_26403_v3' => 'car', 'Ca_30719_v3' => 'car', 'CBR_g17958' => 'cbr', 'CBR_g40516' => 'cbr', 'Cc00_g05350' => 'ccan', 'Cc01_g18690' => 'ccan', 'Cc03_g04830' => 'ccan', 'Cc03_g04850' => 'ccan', 'CDE02G4469' => 'cde', 'CDE06G0883' => 'cde', 'CDE06G1295' => 'cde', 'CDE06G1390' => 'cde', 'CDE07G0584' => 'cde', 'CDE07G1084' => 'cde', 'CDE08G1259' => 'cde', 'Cfa002341' => 'cfa', 'Cfa024337' => 'cfa', 'Ciclev10004749m.g' => 'ccl', 'Ciclev10006127m.g' => 'ccl', 'Ciclev10019720m.g' => 'ccl', 'Ciclev10022652m.g' => 'ccl', 'CiPaw.01G190400' => 'cil', 'CiPaw.01G190500' => 'cil', 'CiPaw.02G116400' => 'cil', 'CiPaw.02G116500' => 'cil', 'CiPaw.04G183000' => 'cil', 'CiPaw.04G183300' => 'cil', 'ClCG05G004610' => 'cla', 'ClCG05G004620' => 'cla', 'ClCG06G006730' => 'cla', 'ClCG06G006740' => 'cla', 'ClCG11G003690' => 'cla', 'COL.COLO4_08276' => 'col', 'COL.COLO4_08277' => 'col', 'COL.COLO4_15787' => 'col', 'COL.COLO4_15789' => 'col', 'Cpa.g.c44815' => 'cpa', 'Cpa.g.sc52.144' => 'cpa', 'Cpa.g.sc58.46' => 'cpa', 'Cpa.g.sc58.47' => 'cpa', 'Cre08.g360900' => 'cre', 'CsaV3_2G013030' => 'csa', 'CsaV3_2G013050' => 'csa', 'CsaV3_2G015620' => 'csa', 'CsaV3_3G012590' => 'csa', 'CsaV3_3G012600' => 'csa', 'CSS0001641' => 'camsi', 'CSS0008310' => 'camsi', 'CSS0013011' => 'camsi', 'CSS0017147' => 'camsi', 'CSS0022970' => 'camsi', 'CSS0025655' => 'camsi', 'CSS0028665' => 'camsi', 'CSS0029117' => 'camsi', 'CSS0032024' => 'camsi', 'CSS0039681' => 'camsi', 'CSS0046516' => 'camsi', 'CSS0050307' => 'camsi', 'DCAR_005871' => 'dca', 'DCAR_007342' => 'dca', 'DCAR_024228' => 'dca', 'DCAR_027277' => 'dca', 'DCAR_030718' => 'dca', 'Dinv20287' => 'din', 'Dinv22461' => 'din', 'Dinv22464' => 'din', 'Dinv29912' => 'din', 'Dinv29913' => 'din', 'Dinv34580' => 'din', 'Dinv34582' => 'din', 'Dinv44632' => 'din', 'Duzib052G0266' => 'dzi', 'Duzib133G0907' => 'dzi', 'Duzib133G1034' => 'dzi', 'Duzib138G0207' => 'dzi', 'Duzib138G0491' => 'dzi', 'Duzib151G0812' => 'dzi', 'Duzib151G1166' => 'dzi', 'Duzib168G0192' => 'dzi', 'Duzib211G0077' => 'dzi', 'Duzib212G0429' => 'dzi', 'Duzib212G0472' => 'dzi', 'ECA233G2617' => 'eca', 'ECA236G4188' => 'eca', 'ECA240G0936' => 'eca', 'ECA240G1129' => 'eca', 'ECA247G0623' => 'eca', 'EL10Ac5g10451' => 'bvu', 'EL10Ac5g10453' => 'bvu', 'EL10Ac5g10894' => 'bvu', 'Eucgr.H00192' => 'egr', 'Eucgr.H00193' => 'egr', 'Eucgr.H00194' => 'egr', 'Eucgr.J01562' => 'egr', 'Eucgr.K03301' => 'egr', 'FAN02G0632' => 'fan', 'FAN05G5378' => 'fan', 'FAN09G3247' => 'fan', 'FAN12G0435' => 'fan', 'FAN12G2426' => 'fan', 'FAN14G1707' => 'fan', 'FAN14G4725' => 'fan', 'FAN15G2071' => 'fan', 'FAN17G3065' => 'fan', 'FAN19G1376' => 'fan', 'FAN20G0354' => 'fan', 'FAN20G2429' => 'fan', 'FAN20G2658' => 'fan', 'FAN24G2343' => 'fan', 'FAN27G2362' => 'fan', 'FAN28G1765' => 'fan', 'FvH4_1g16020' => 'fve', 'FvH4_2g04890' => 'fve', 'FvH4_2g22270' => 'fve', 'FvH4_4g02630' => 'fve', 'FvH4_4g02640' => 'fve', 'FvH4_6g02650' => 'fve', 'Glyma.02G140600' => 'gma', 'Glyma.03G159900' => 'gma', 'Glyma.05G234800' => 'gma', 'Glyma.07G269600' => 'gma', 'Glyma.08G042300' => 'gma', 'Glyma.10G033500' => 'gma', 'Glyma.10G185200' => 'gma', 'Glyma.17G004300' => 'gma', 'Glyma.19G161900' => 'gma', 'Glyma.20G205100' => 'gma', 'Glyma.20G205200' => 'gma', 'Gohir.A01G139101' => 'ghi', 'Gohir.A02G035600' => 'ghi', 'Gohir.A02G117901' => 'ghi', 'Gohir.A07G210100' => 'ghi', 'Gohir.A07G210200' => 'ghi', 'Gohir.A08G061100' => 'ghi', 'Gohir.A09G223000' => 'ghi', 'Gohir.A09G223100' => 'ghi', 'Gohir.A10G113900' => 'ghi', 'Gohir.A10G114000' => 'ghi', 'Gohir.D02G042300' => 'ghi', 'Gohir.D07G216100' => 'ghi', 'Gohir.D07G216200' => 'ghi', 'Gohir.D08G070400' => 'ghi', 'Gohir.D09G225000' => 'ghi', 'Gohir.D09G225100' => 'ghi', 'Gohir.D10G152300' => 'ghi', 'Gohir.D10G153200' => 'ghi', 'Gohir.D11G133701' => 'ghi', 'Gorai.004G074100' => 'gra', 'Gorai.005G046800' => 'gra', 'Gorai.006G246500' => 'gra', 'Gorai.006G246600' => 'gra', 'Gorai.007G142900' => 'gra', 'Gorai.011G171000' => 'gra', 'Gorai.011G171100' => 'gra', 'Gorai.013G104300' => 'gra', 'Gorai.013G104400' => 'gra', 'GSVIVG01000754001' => 'vvi', 'GSVIVG01000756001' => 'vvi', 'GSVIVG01010903001' => 'vvi', 'GSVIVG01017623001' => 'vvi', 'GSVIVG01018113001' => 'vvi', 'GSVIVG01018116001' => 'vvi', 'GSVIVG01018118001' => 'vvi', 'HanXRQChr03g0076211' => 'han', 'HanXRQChr03g0092431' => 'han', 'HanXRQChr03g0092441' => 'han', 'HanXRQChr03g0092591' => 'han', 'HanXRQChr03g0092671' => 'han', 'HanXRQChr03g0092681' => 'han', 'HanXRQChr03g0092691' => 'han', 'HanXRQChr03g0092701' => 'han', 'HanXRQChr03g0092721' => 'han', 'HanXRQChr03g0092731' => 'han', 'HanXRQChr04g0113681' => 'han', 'HanXRQChr10g0281371' => 'han', 'HanXRQChr11g0337141' => 'han', 'HanXRQChr13g0424521' => 'han', 'HanXRQChr13g0424531' => 'han', 'HanXRQChr13g0424541' => 'han', 'HanXRQChr16g0498221' => 'han', 'Haze_04377' => 'cav', 'Haze_11298' => 'cav', 'Haze_24547' => 'cav', 'Haze_24550' => 'cav', 'Haze_26587' => 'cav', 'Hma1.2p1_0650F.1_g195410' => 'hma', 'Hma1.2p1_0893F.1_g233470' => 'hma', 'HPP92_006508' => 'vpl', 'HPP92_024780' => 'vpl', 'Hund02688' => 'sun', 'Hund09380' => 'sun', 'Hund09381' => 'sun', 'Hund09832' => 'sun', 'Hund09833' => 'sun', 'Hund11351' => 'sun', 'Hund11513' => 'sun', 'Lalb_Chr06g0162591' => 'lal', 'Lalb_Chr06g0162601' => 'lal', 'Lalb_Chr06g0169321' => 'lal', 'Lalb_Chr09g0330951' => 'lal', 'Lalb_Chr16g0387631' => 'lal', 'Lalb_Chr21g0306241' => 'lal', 'Lalb_Chr25g0290051' => 'lal', 'Lalb_Chr25g0290061' => 'lal', 'Lalb_Chr25g0290071' => 'lal', 'Lj1g0003876' => 'lja', 'Lj1P1207T36' => 'lonja', 'Lj2C1156G12' => 'lonja', 'Lj3A793G39' => 'lonja', 'Lj3C580G2' => 'lonja', 'Lj3C780G2' => 'lonja', 'Lj3C780T4' => 'lonja', 'Lj3C793G9' => 'lonja', 'Lj4g0012960' => 'lja', 'Lj5g0021252' => 'lja', 'Lj5g0021484' => 'lja', 'Lj5g0024528' => 'lja', 'Lj6A399T12' => 'lonja', 'Lj6A656G65' => 'lonja', 'Lsat_1_v5_gn_3_125500' => 'lsa', 'Lsat_1_v5_gn_3_125540' => 'lsa', 'Lsat_1_v5_gn_5_72701' => 'lsa', 'Lsat_1_v5_gn_8_91560' => 'lsa', 'Lsat_1_v5_gn_9_9640' => 'lsa', 'Manes.01G200600' => 'mes', 'Manes.01G200700' => 'mes', 'Manes.03G168900' => 'mes', 'Manes.03G169000' => 'mes', 'Manes.05G085801' => 'mes', 'Manes.05G086200' => 'mes', 'Manes.15G036700' => 'mes', 'Manes.15G036900' => 'mes', 'Mapoly0004s0172' => 'mpo', 'Mapoly0023s0001' => 'mpo', 'Mapoly0142s0012' => 'mpo', 'MBI01_g32854_MAGBIO' => 'mbi', 'MBI11_g24427_MAGBIO' => 'mbi', 'MBI11_g47319_MAGBIO' => 'mbi', 'MCO01G433' => 'mco', 'MD00G1187800' => 'mdo', 'MD04G1226500' => 'mdo', 'MD05G1203900' => 'mdo', 'MD10G1191100' => 'mdo', 'MD12G1243500' => 'mdo', 'MD13G1207000' => 'mdo', 'MD13G1207100' => 'mdo', 'MD16G1208600' => 'mdo', 'Medtr1g050352' => 'mtr', 'Medtr1g070385' => 'mtr', 'Medtr1g070450' => 'mtr', 'Medtr1g075200' => 'mtr', 'Medtr1g075250' => 'mtr', 'Medtr1g075260' => 'mtr', 'Medtr1g475250' => 'mtr', 'Medtr4g075450' => 'mtr', 'Medtr7g096300' => 'mtr', 'Medtr8g105110' => 'mtr', 'MELO3C006470.2' => 'cme', 'MELO3C006471.2' => 'cme', 'MELO3C020772.2' => 'cme', 'MELO3C026780.2' => 'cme', 'MELO3C026781.2' => 'cme', 'Migut.D00390' => 'egut', 'Migut.G00435' => 'egut', 'Migut.G00436' => 'egut', 'Migut.G00718' => 'egut', 'MSTRG.21891' => 'ama', 'MSTRG.26910' => 'ama', 'MSTRG.4099' => 'ama', 'MSTRG.9925' => 'ama', 'Nitab4.5_0000165g0010' => 'nta', 'Nitab4.5_0000209g0180' => 'nta', 'Nitab4.5_0000244g0440' => 'nta', 'Nitab4.5_0000525g0220' => 'nta', 'Nitab4.5_0001597g0020' => 'nta', 'Nitab4.5_0001878g0040' => 'nta', 'Nitab4.5_0001878g0060' => 'nta', 'Nitab4.5_0002838g0100' => 'nta', 'Nitab4.5_0002838g0120' => 'nta', 'Nitab4.5_0004798g0030' => 'nta', 'Nitab4.5_0005420g0010' => 'nta', 'Nitab4.5_0005507g0010' => 'nta', 'Nitab4.5_0005574g0020' => 'nta', 'Nitab4.5_0005838g0010' => 'nta', 'Nitab4.5_0010580g0020' => 'nta', 'Nn1g02599' => 'nnu', 'Nn1g02608' => 'nnu', 'Nn3g17742' => 'nnu', 'Nn3g19534' => 'nnu', 'Nn3g19535' => 'nnu', 'Oeu008790.1' => 'oeu', 'Oeu008792.1' => 'oeu', 'Oeu032590.1' => 'oeu', 'Oeu035349.1' => 'oeu', 'Oeu049791.1' => 'oeu', 'Os01g0774500' => 'osa', 'Os03g0628800' => 'osa', 'Os03g0798600' => 'osa', 'Os05g0508800' => 'osa', 'Peaxi162Scf00036g02018' => 'pax', 'Peaxi162Scf00578g00032' => 'pax', 'Peaxi162Scf00578g00317' => 'pax', 'Peaxi162Scf00785g00114' => 'pax', 'Peaxi162Scf00813g00119' => 'pax', 'Peaxi162Scf00906g00227' => 'pax', 'PGR004G0875' => 'pgr', 'PGR004G2424' => 'pgr', 'PGR031G1239' => 'pgr', 'PGR031G2474' => 'pgr', 'PGR044G0423' => 'pgr', 'PGSC0003DMG400001128' => 'stu', 'PGSC0003DMG400007336' => 'stu', 'PGSC0003DMG400016318' => 'stu', 'PGSC0003DMG400016319' => 'stu', 'PGSC0003DMG400018074' => 'stu', 'Phvul.001G157700' => 'pvu', 'Phvul.002G148550' => 'pvu', 'Phvul.002G320200' => 'pvu', 'Phvul.003G089200' => 'pvu', 'Phvul.007G126000' => 'pvu', 'Phvul.007G126100' => 'pvu', 'Phvul.007G178000' => 'pvu', 'Phvul.007G178200' => 'pvu', 'Potri.002G043000' => 'ptr', 'Potri.002G043200' => 'ptr', 'Potri.003G123750' => 'ptr', 'Potri.005G055401' => 'ptr', 'Potri.005G219700' => 'ptr', 'Potri.005G220000' => 'ptr', 'Potri.008G161901' => 'ptr', 'Potri.008G162000' => 'ptr', 'Potri.008G162400' => 'ptr', 'Potri.010G076900' => 'ptr', 'Pp3c12_9180' => 'ppa', 'Pp3c13_19770' => 'ppa', 'Pp3c14_22950' => 'ppa', 'Pp3c16_12160' => 'ppa', 'Pp3c27_7820' => 'ppa', 'Pp3c2_3490' => 'ppa', 'Pp3c3_23700' => 'ppa', 'Pp3c3_36520' => 'ppa', 'Pp3c4_15250' => 'ppa', 'PRCOL_00007002' => 'pco', 'Prupe.1G030600' => 'ppe', 'Prupe.1G030700' => 'ppe', 'Prupe.6G345200' => 'ppe', 'Prupe.8G230300' => 'ppe', 'Prupe.8G230500' => 'ppe', 'Psat3g059600' => 'psa', 'Psat5g200920' => 'psa', 'Psat6g056440' => 'psa', 'Psat6g057360' => 'psa', 'Psat6g134120' => 'psa', 'Psat6g134160' => 'psa', 'Psat7g008640' => 'psa', 'Psat7g185240' => 'psa', 'PSO017G1330' => 'pso', 'PSO063G6097' => 'pso', 'PSO170G0835' => 'pso', 'PSO170G2499' => 'pso', 'PSO210G5058' => 'pso', 'PSO210G6154' => 'pso', 'PSO585G0031' => 'pso', 'PSO832G0264' => 'pso', 'PSO832G4288' => 'pso', 'QL03p027355' => 'qlo', 'QL03p027430' => 'qlo', 'QL04p081380' => 'qlo', 'QL06p015642' => 'qlo', 'QL06p015650' => 'qlo', 'QL06p015686' => 'qlo', 'QL12p042927' => 'qlo', 'QL93p1863_0035' => 'qlo', 'RcHm_v2.0_Chr3g0450581' => 'rch', 'RcHm_v2.0_Chr4g0390371' => 'rch', 'RcHm_v2.0_Chr4g0390381' => 'rch', 'RcHm_v2.0_Chr4g0390491' => 'rch', 'RcHm_v2.0_Chr4g0390501' => 'rch', 'RcHm_v2.0_Chr6g0289231' => 'rch', 'Rhsim04G0190400' => 'rsi', 'Rhsim04G0190500' => 'rsi', 'Rhsim04G0190600' => 'rsi', 'Rhsim13G0031400' => 'rsi', 'Rhsim13G0165600' => 'rsi', 'RhsimUnG0114600' => 'rsi', 'RhsimUnG0114700' => 'rsi', 'Sabra02G0034800' => 'sbr', 'Sabra02G0035100' => 'sbr', 'Sabra05G0168600' => 'sbr', 'Sabra05G0168800' => 'sbr', 'Sabra08G0123700' => 'sbr', 'Sabra10G0031900' => 'sbr', 'Sabra13G0039000' => 'sbr', 'SalBow2G0782' => 'sbo', 'SalBow2G1403' => 'sbo', 'SalBow4G0074' => 'sbo', 'SalBow4G2635' => 'sbo', 'SalBow5G3010' => 'sbo', 'Sc05g0000870' => 'sci', 'Sc05g0000890' => 'sci', 'Sc13g0005000' => 'sci', 'Sc13g0005030' => 'sci', 'Sc19g0003790' => 'sci', 'Sc19g0003800' => 'sci', 'Sed0003467' => 'sed', 'Sed0009355' => 'sed', 'Sed0009894' => 'sed', 'Sed0011972' => 'sed', 'Sed0021483' => 'sed', 'Sed0021750' => 'sed', 'Sed0026279' => 'sed', 'SEGI_05312' => 'sgi', 'SEGI_10112' => 'sgi', 'SEGI_15835' => 'sgi', 'SEGI_30386' => 'sgi', 'SEGI_34122' => 'sgi', 'SEGI_35063' => 'sgi', 'SGA_v2.0_scaffold101G29794' => 'sas', 'SGA_v2.0_scaffold1G00573' => 'sas', 'SGA_v2.0_scaffold79G25637' => 'sas', 'SGA_v2.0_scaffold88G27283' => 'sas', 'SGA_v2.0_scaffold88G27285' => 'sas', 'SGA_v2.0_scaffold88G27331' => 'sas', 'SHI09937' => 'shi', 'SMO119G0302' => 'smo', 'SMO137G0231' => 'smo', 'SMO367G1151' => 'smo', 'Solyc02g082000.3' => 'sly', 'Solyc06g031670.3' => 'sly', 'Solyc06g053810.3' => 'sly', 'Solyc07g025457.1' => 'sly', 'Solyc08g059740.1' => 'sly', 'Solyc08g059750.3' => 'sly', 'Solyc09g083370.3' => 'sly', 'Solyc12g038950.3' => 'sly', 'Sopen02g026630' => 'spe', 'Sopen06g018930' => 'spe', 'Sopen06g018940' => 'spe', 'Sopen08g009460' => 'spe', 'Sopen09g032290' => 'spe', 'Sp1g03080' => 'spa', 'Sp1g03090' => 'spa', 'Sp1g05480' => 'spa', 'Sp2g07860' => 'spa', 'Sp2g08430' => 'spa', 'Sp2g08440' => 'spa', 'Sp2g26200' => 'spa', 'Sp4g13170' => 'spa', 'Sp6g33840' => 'spa', 'SpUn1204_0010' => 'spa', 'TAR365G0908' => 'tar', 'TAR381G1270' => 'tar', 'TAR381G1651' => 'tar', 'TAR625G1131' => 'tar', 'TAR633G0962' => 'tar', 'TAR633G1729' => 'tar', 'TAR633G1864' => 'tar', 'TAR636G0221' => 'tar', 'TAR636G0314' => 'tar', 'TAR636G3202' => 'tar', 'THA.LOC104800805' => 'tha', 'THA.LOC104801096' => 'tha', 'THA.LOC104801555' => 'tha', 'THA.LOC104808491' => 'tha', 'THA.LOC104808595' => 'tha', 'THA.LOC104815985' => 'tha', 'THA.LOC104822250' => 'tha', 'THA.LOC104826071' => 'tha', 'Thecc.01G265200' => 'tca', 'Thecc.01G265300' => 'tca', 'Thecc.01G265700' => 'tca', 'Thecc.03G109100' => 'tca', 'Thecc.04G245900' => 'tca', 'Thecc.04G246000' => 'tca', 'Thhalv10003334m.g' => 'esa', 'Thhalv10005508m.g' => 'esa', 'Thhalv10005643m.g' => 'esa', 'Thhalv10007316m.g' => 'esa', 'Thhalv10009006m.g' => 'esa', 'Thhalv10009309m.g' => 'esa', 'Thhalv10014917m.g' => 'esa', 'Thhalv10014919m.g' => 'esa', 'Thhalv10015393m.g' => 'esa', 'Thhalv10016515m.g' => 'esa', 'Thhalv10029242m.g' => 'esa', 'TPR.G16654' => 'tpr', 'TPR.G20589' => 'tpr', 'TPR.G23029' => 'tpr', 'TPR.G27731' => 'tpr', 'TPR.G28889' => 'tpr', 'TPR.G28899' => 'tpr', 'TPR.G30846' => 'tpr', 'TPR.G5452' => 'tpr', 'TPR.G5713' => 'tpr', 'TPR.G9046' => 'tpr', 'TPR.G9061' => 'tpr', 'TWI09G1075' => 'twi', 'TWI12G0806' => 'twi', 'TWI18G0108' => 'twi', 'TWI53G1361' => 'twi', 'TWI73G0185' => 'twi', 'TWI73G0427' => 'twi', 'unitig_37.g12001' => 'ugi', 'unitig_747.g21660' => 'ugi', 'unitig_748.g7232' => 'ugi', 'unitig_748.g7315' => 'ugi', 'unitig_85.g27262' => 'ugi', 'unitig_92.g28220' => 'ugi', 'vmacro02632' => 'vma', 'vmacro08410' => 'vma', 'vmacro08411' => 'vma', 'vmacro15407' => 'vma', 'VMungo0251G3619' => 'vmu', 'VMungo0720G1204' => 'vmu', 'VMungo0720G1918' => 'vmu', 'VMungo0720G2387' => 'vmu', 'VMungo0720G2961' => 'vmu', 'VMungo1215G2154' => 'vmu', 'VMungo1383G2411' => 'vmu', 'Zm00001eb051130' => 'zma', 'Zm00001eb116830' => 'zma', 'Zm00001eb116850' => 'zma', 'Zm00001eb151740' => 'zma', 'Zm00001eb292360' => 'zma', 'Zm00001eb301640' => 'zma' ) $gf_id = 'HOM05D000856' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000856' ) $data_identifier = 'HOM05D000856' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 13, 'ath' => (int) 10, 'atr' => (int) 1, 'acertr' => (int) 8, 'cqu' => (int) 6, 'bca' => (int) 21, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 11, 'car' => (int) 9, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 8, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 5, 'fan' => (int) 16, 'fve' => (int) 6, 'gma' => (int) 11, 'ghi' => (int) 19, 'gra' => (int) 9, 'vvi' => (int) 7, 'han' => (int) 17, 'cav' => (int) 5, 'hma' => (int) 2, 'vpl' => (int) 2, 'sun' => (int) 7, 'lal' => (int) 9, 'lja' => (int) 5, 'lonja' => (int) 9, 'lsa' => (int) 5, 'mes' => (int) 8, 'mpo' => (int) 3, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 10, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 15, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 9, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 9, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 6, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 5, 'spa' => (int) 10, 'tar' => (int) 10, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 11, 'tpr' => (int) 11, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 4, 'vmu' => (int) 7, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb301640' $species_info = array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ) $local_species = 'pvu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000856', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p00010' => 'bna', 'A03p04160' => 'bna', 'A03p17160' => 'bna', 'A04p23370' => 'bna', 'A05p14860' => 'bna', 'A08p37020' => 'bna', 'A09p08050' => 'bna', 'A09p66800' => 'bna', 'A09p67940' => 'bna', 'A10p02680' => 'bna', 'A10p05320' => 'bna', 'Aa31LG1G20560' => 'aar', 'Aa31LG1G20610' => 'aar', 'Aa31LG1G7810' => 'aar', 'Aa31LG5G3590' => 'aar', 'Aa31LG5G6140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3819' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4683' => 'aag', 'Actinidia04480' => 'ach', 'Actinidia05466' => 'ach', 'Actinidia08445' => 'ach', 'Actinidia21170' => 'ach', 'Actinidia24812' => 'ach', 'Actinidia24951' => 'ach', 'Actinidia40088' => 'ach', 'Ah.02g111660' => 'amhyb', 'Ah.11g048900' => 'amhyb', 'Ah.11g049910' => 'amhyb', 'AL1G13870' => 'aly', 'AL1G13880' => 'aly', 'AL1G16760' => 'aly', 'AL390U10020' => 'aly', 'AL4G25520' => 'aly', 'AL6G19890' => 'aly', 'AL6G19900' => 'aly', 'AL6G19910' => 'aly', 'AL8G40100' => 'aly', 'Aqoxy2G03562' => 'aox', 'Aqoxy5G00316' => 'aox', 'Aqoxy5G00926' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1628KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1H403S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2FU6SJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.882I6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8YRY2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YN1SN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AF70II' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZA8L1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F916KL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHRD8H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KTZ8QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S22EMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8M29T' => 'arhy', 'AT1G04270' => 'ath', 'AT1G04280' => 'ath', 'AT1G06750' => 'ath', 'AT1G33850' => 'ath', 'AT2G30630' => 'ath', 'AT5G09490' => 'ath', 'AT5G09500' => 'ath', 'AT5G09510' => 'ath', 'AT5G43640' => 'ath', 'AT5G63070' => 'ath', 'ATR0605G315' => 'atr', 'Atru.chr11.175' => 'acertr', 'Atru.chr11.653' => 'acertr', 'Atru.chr3.1616' => 'acertr', 'Atru.chr4.2230' => 'acertr', 'Atru.chr4.2232' => 'acertr', 'Atru.chr5.1598' => 'acertr', 'Atru.chr5.1600' => 'acertr', 'Atru.chr5.2188' => 'acertr', 'AUR62008326' => 'cqu', 'AUR62011922' => 'cqu', 'AUR62011924' => 'cqu', 'AUR62021771' => 'cqu', 'AUR62032237' => 'cqu', 'AUR62032240' => 'cqu', 'BcaB01g05572' => 'bca', 'BcaB02g10337' => 'bca', 'BcaB04g19944' => 'bca', 'BcaB05g21548' => 'bca', 'BcaB05g21549' => 'bca', 'BcaB05g23227' => 'bca', 'BcaB06g26256' => 'bca', 'BcaB06g26257' => 'bca', 'BcaB06g28379' => 'bca', 'BcaC02g11159' => 'bca', 'BcaC03g13258' => 'bca', 'BcaC03g13259' => 'bca', 'BcaC05g24456' => 'bca', 'BcaC05g24457' => 'bca', 'BcaC07g36922' => 'bca', 'BcaC07g36923' => 'bca', 'BcaC07g42050' => 'bca', 'BcaC07g42176' => 'bca', 'BcaC07g42195' => 'bca', 'BcaC07g42196' => 'bca', 'BcaNung06674' => 'bca', 'BolC2t06351H' => 'bol', 'BolC2t06352H' => 'bol', 'BolC3t12993H' => 'bol', 'BolC4t23525H' => 'bol', 'BolC4t27475H' => 'bol', 'BolC5t29025H' => 'bol', 'BolC5t29026H' => 'bol', 'BolC8t46898H' => 'bol', 'BolC8t46899H' => 'bol', 'BolC8t52630H' => 'bol', 'BolC8t52765H' => 'bol', 'BolC9t53824H' => 'bol', 'BraA03t09760Z' => 'bra', 'BraA03t10990Z' => 'bra', 'BraA05t20413Z' => 'bra', 'BraA08t35602Z' => 'bra', 'BraA09t36458Z' => 'bra', 'BraA09t42018Z' => 'bra', 'BraA09t42129Z' => 'bra', 'BraA10t42536Z' => 'bra', 'BraA10t42537Z' => 'bra', 'C01p10690' => 'bna', 'C02p03890' => 'bna', 'C02p03900' => 'bna', 'C03p04620' => 'bna', 'C04p19870' => 'bna', 'C04p59670' => 'bna', 'C05p02460' => 'bna', 'C05p02470' => 'bna', 'C08p00980' => 'bna', 'C08p00990' => 'bna', 'C08p51030' => 'bna', 'C08p52360' => 'bna', 'C09p09120' => 'bna', 'CAN.G19.15' => 'can', 'CAN.G251.10' => 'can', 'CAN.G251.9' => 'can', 'CAN.G398.24' => 'can', 'CAN.G410.32' => 'can', 'CAN.G881.2' => 'can', 'CANSAT01G3025' => 'cansat', 'CANSAT78G1211' => 'cansat', 'CANSAT78G1218' => 'cansat', 'CANSAT78G1521' => 'cansat', 'CANSAT78G1670' => 'cansat', 'CARHR003600' => 'chi', 'CARHR003610' => 'chi', 'CARHR006290' => 'chi', 'CARHR006430' => 'chi', 'CARHR124110' => 'chi', 'CARHR203870' => 'chi', 'CARHR203880' => 'chi', 'CARHR203890' => 'chi', 'CARHR276880' => 'chi', 'Carub.0001s0346' => 'cru', 'Carub.0001s0347' => 'cru', 'Carub.0001s0607' => 'cru', 'Carub.0003s2768' => 'cru', 'Carub.0003s2769' => 'cru', 'Carub.0004s1178' => 'cru', 'Carub.0006s0806' => 'cru', 'Carub.0006s0807' => 'cru', 'Carub.0006s0808' => 'cru', 'Carub.0008s0501' => 'cru', 'Carub.0008s2379' => 'cru', 'Ca_08655_v3' => 'car', 'Ca_08922_v3' => 'car', 'Ca_08923_v3' => 'car', 'Ca_09119_v3' => 'car', 'Ca_09703_v3' => 'car', 'Ca_09705_v3' => 'car', 'Ca_09835_v3' => 'car', 'Ca_26403_v3' => 'car', 'Ca_30719_v3' => 'car', 'CBR_g17958' => 'cbr', 'CBR_g40516' => 'cbr', 'Cc00_g05350' => 'ccan', 'Cc01_g18690' => 'ccan', 'Cc03_g04830' => 'ccan', 'Cc03_g04850' => 'ccan', 'CDE02G4469' => 'cde', 'CDE06G0883' => 'cde', 'CDE06G1295' => 'cde', 'CDE06G1390' => 'cde', 'CDE07G0584' => 'cde', 'CDE07G1084' => 'cde', 'CDE08G1259' => 'cde', 'Cfa002341' => 'cfa', 'Cfa024337' => 'cfa', 'Ciclev10004749m.g' => 'ccl', 'Ciclev10006127m.g' => 'ccl', 'Ciclev10019720m.g' => 'ccl', 'Ciclev10022652m.g' => 'ccl', 'CiPaw.01G190400' => 'cil', 'CiPaw.01G190500' => 'cil', 'CiPaw.02G116400' => 'cil', 'CiPaw.02G116500' => 'cil', 'CiPaw.04G183000' => 'cil', 'CiPaw.04G183300' => 'cil', 'ClCG05G004610' => 'cla', 'ClCG05G004620' => 'cla', 'ClCG06G006730' => 'cla', 'ClCG06G006740' => 'cla', 'ClCG11G003690' => 'cla', 'COL.COLO4_08276' => 'col', 'COL.COLO4_08277' => 'col', 'COL.COLO4_15787' => 'col', 'COL.COLO4_15789' => 'col', 'Cpa.g.c44815' => 'cpa', 'Cpa.g.sc52.144' => 'cpa', 'Cpa.g.sc58.46' => 'cpa', 'Cpa.g.sc58.47' => 'cpa', 'Cre08.g360900' => 'cre', 'CsaV3_2G013030' => 'csa', 'CsaV3_2G013050' => 'csa', 'CsaV3_2G015620' => 'csa', 'CsaV3_3G012590' => 'csa', 'CsaV3_3G012600' => 'csa', 'CSS0001641' => 'camsi', 'CSS0008310' => 'camsi', 'CSS0013011' => 'camsi', 'CSS0017147' => 'camsi', 'CSS0022970' => 'camsi', 'CSS0025655' => 'camsi', 'CSS0028665' => 'camsi', 'CSS0029117' => 'camsi', 'CSS0032024' => 'camsi', 'CSS0039681' => 'camsi', 'CSS0046516' => 'camsi', 'CSS0050307' => 'camsi', 'DCAR_005871' => 'dca', 'DCAR_007342' => 'dca', 'DCAR_024228' => 'dca', 'DCAR_027277' => 'dca', 'DCAR_030718' => 'dca', 'Dinv20287' => 'din', 'Dinv22461' => 'din', 'Dinv22464' => 'din', 'Dinv29912' => 'din', 'Dinv29913' => 'din', 'Dinv34580' => 'din', 'Dinv34582' => 'din', 'Dinv44632' => 'din', 'Duzib052G0266' => 'dzi', 'Duzib133G0907' => 'dzi', 'Duzib133G1034' => 'dzi', 'Duzib138G0207' => 'dzi', 'Duzib138G0491' => 'dzi', 'Duzib151G0812' => 'dzi', 'Duzib151G1166' => 'dzi', 'Duzib168G0192' => 'dzi', 'Duzib211G0077' => 'dzi', 'Duzib212G0429' => 'dzi', 'Duzib212G0472' => 'dzi', 'ECA233G2617' => 'eca', 'ECA236G4188' => 'eca', 'ECA240G0936' => 'eca', 'ECA240G1129' => 'eca', 'ECA247G0623' => 'eca', 'EL10Ac5g10451' => 'bvu', 'EL10Ac5g10453' => 'bvu', 'EL10Ac5g10894' => 'bvu', 'Eucgr.H00192' => 'egr', 'Eucgr.H00193' => 'egr', 'Eucgr.H00194' => 'egr', 'Eucgr.J01562' => 'egr', 'Eucgr.K03301' => 'egr', 'FAN02G0632' => 'fan', 'FAN05G5378' => 'fan', 'FAN09G3247' => 'fan', 'FAN12G0435' => 'fan', 'FAN12G2426' => 'fan', 'FAN14G1707' => 'fan', 'FAN14G4725' => 'fan', 'FAN15G2071' => 'fan', 'FAN17G3065' => 'fan', 'FAN19G1376' => 'fan', 'FAN20G0354' => 'fan', 'FAN20G2429' => 'fan', 'FAN20G2658' => 'fan', 'FAN24G2343' => 'fan', 'FAN27G2362' => 'fan', 'FAN28G1765' => 'fan', 'FvH4_1g16020' => 'fve', 'FvH4_2g04890' => 'fve', 'FvH4_2g22270' => 'fve', 'FvH4_4g02630' => 'fve', 'FvH4_4g02640' => 'fve', 'FvH4_6g02650' => 'fve', 'Glyma.02G140600' => 'gma', 'Glyma.03G159900' => 'gma', 'Glyma.05G234800' => 'gma', 'Glyma.07G269600' => 'gma', 'Glyma.08G042300' => 'gma', 'Glyma.10G033500' => 'gma', 'Glyma.10G185200' => 'gma', 'Glyma.17G004300' => 'gma', 'Glyma.19G161900' => 'gma', 'Glyma.20G205100' => 'gma', 'Glyma.20G205200' => 'gma', 'Gohir.A01G139101' => 'ghi', 'Gohir.A02G035600' => 'ghi', 'Gohir.A02G117901' => 'ghi', 'Gohir.A07G210100' => 'ghi', 'Gohir.A07G210200' => 'ghi', 'Gohir.A08G061100' => 'ghi', 'Gohir.A09G223000' => 'ghi', 'Gohir.A09G223100' => 'ghi', 'Gohir.A10G113900' => 'ghi', 'Gohir.A10G114000' => 'ghi', 'Gohir.D02G042300' => 'ghi', 'Gohir.D07G216100' => 'ghi', 'Gohir.D07G216200' => 'ghi', 'Gohir.D08G070400' => 'ghi', 'Gohir.D09G225000' => 'ghi', 'Gohir.D09G225100' => 'ghi', 'Gohir.D10G152300' => 'ghi', 'Gohir.D10G153200' => 'ghi', 'Gohir.D11G133701' => 'ghi', 'Gorai.004G074100' => 'gra', 'Gorai.005G046800' => 'gra', 'Gorai.006G246500' => 'gra', 'Gorai.006G246600' => 'gra', 'Gorai.007G142900' => 'gra', 'Gorai.011G171000' => 'gra', 'Gorai.011G171100' => 'gra', 'Gorai.013G104300' => 'gra', 'Gorai.013G104400' => 'gra', 'GSVIVG01000754001' => 'vvi', 'GSVIVG01000756001' => 'vvi', 'GSVIVG01010903001' => 'vvi', 'GSVIVG01017623001' => 'vvi', 'GSVIVG01018113001' => 'vvi', 'GSVIVG01018116001' => 'vvi', 'GSVIVG01018118001' => 'vvi', 'HanXRQChr03g0076211' => 'han', 'HanXRQChr03g0092431' => 'han', 'HanXRQChr03g0092441' => 'han', 'HanXRQChr03g0092591' => 'han', 'HanXRQChr03g0092671' => 'han', 'HanXRQChr03g0092681' => 'han', 'HanXRQChr03g0092691' => 'han', 'HanXRQChr03g0092701' => 'han', 'HanXRQChr03g0092721' => 'han', 'HanXRQChr03g0092731' => 'han', 'HanXRQChr04g0113681' => 'han', 'HanXRQChr10g0281371' => 'han', 'HanXRQChr11g0337141' => 'han', 'HanXRQChr13g0424521' => 'han', 'HanXRQChr13g0424531' => 'han', 'HanXRQChr13g0424541' => 'han', 'HanXRQChr16g0498221' => 'han', 'Haze_04377' => 'cav', 'Haze_11298' => 'cav', 'Haze_24547' => 'cav', 'Haze_24550' => 'cav', 'Haze_26587' => 'cav', 'Hma1.2p1_0650F.1_g195410' => 'hma', 'Hma1.2p1_0893F.1_g233470' => 'hma', 'HPP92_006508' => 'vpl', 'HPP92_024780' => 'vpl', 'Hund02688' => 'sun', 'Hund09380' => 'sun', 'Hund09381' => 'sun', 'Hund09832' => 'sun', 'Hund09833' => 'sun', 'Hund11351' => 'sun', 'Hund11513' => 'sun', 'Lalb_Chr06g0162591' => 'lal', 'Lalb_Chr06g0162601' => 'lal', 'Lalb_Chr06g0169321' => 'lal', 'Lalb_Chr09g0330951' => 'lal', 'Lalb_Chr16g0387631' => 'lal', 'Lalb_Chr21g0306241' => 'lal', 'Lalb_Chr25g0290051' => 'lal', 'Lalb_Chr25g0290061' => 'lal', 'Lalb_Chr25g0290071' => 'lal', 'Lj1g0003876' => 'lja', 'Lj1P1207T36' => 'lonja', 'Lj2C1156G12' => 'lonja', 'Lj3A793G39' => 'lonja', 'Lj3C580G2' => 'lonja', 'Lj3C780G2' => 'lonja', 'Lj3C780T4' => 'lonja', 'Lj3C793G9' => 'lonja', 'Lj4g0012960' => 'lja', 'Lj5g0021252' => 'lja', 'Lj5g0021484' => 'lja', 'Lj5g0024528' => 'lja', 'Lj6A399T12' => 'lonja', 'Lj6A656G65' => 'lonja', 'Lsat_1_v5_gn_3_125500' => 'lsa', 'Lsat_1_v5_gn_3_125540' => 'lsa', 'Lsat_1_v5_gn_5_72701' => 'lsa', 'Lsat_1_v5_gn_8_91560' => 'lsa', 'Lsat_1_v5_gn_9_9640' => 'lsa', 'Manes.01G200600' => 'mes', 'Manes.01G200700' => 'mes', 'Manes.03G168900' => 'mes', 'Manes.03G169000' => 'mes', 'Manes.05G085801' => 'mes', 'Manes.05G086200' => 'mes', 'Manes.15G036700' => 'mes', 'Manes.15G036900' => 'mes', 'Mapoly0004s0172' => 'mpo', 'Mapoly0023s0001' => 'mpo', 'Mapoly0142s0012' => 'mpo', 'MBI01_g32854_MAGBIO' => 'mbi', 'MBI11_g24427_MAGBIO' => 'mbi', 'MBI11_g47319_MAGBIO' => 'mbi', 'MCO01G433' => 'mco', 'MD00G1187800' => 'mdo', 'MD04G1226500' => 'mdo', 'MD05G1203900' => 'mdo', 'MD10G1191100' => 'mdo', 'MD12G1243500' => 'mdo', 'MD13G1207000' => 'mdo', 'MD13G1207100' => 'mdo', 'MD16G1208600' => 'mdo', 'Medtr1g050352' => 'mtr', 'Medtr1g070385' => 'mtr', 'Medtr1g070450' => 'mtr', 'Medtr1g075200' => 'mtr', 'Medtr1g075250' => 'mtr', 'Medtr1g075260' => 'mtr', 'Medtr1g475250' => 'mtr', 'Medtr4g075450' => 'mtr', 'Medtr7g096300' => 'mtr', 'Medtr8g105110' => 'mtr', 'MELO3C006470.2' => 'cme', 'MELO3C006471.2' => 'cme', 'MELO3C020772.2' => 'cme', 'MELO3C026780.2' => 'cme', 'MELO3C026781.2' => 'cme', 'Migut.D00390' => 'egut', 'Migut.G00435' => 'egut', 'Migut.G00436' => 'egut', 'Migut.G00718' => 'egut', 'MSTRG.21891' => 'ama', 'MSTRG.26910' => 'ama', 'MSTRG.4099' => 'ama', 'MSTRG.9925' => 'ama', 'Nitab4.5_0000165g0010' => 'nta', 'Nitab4.5_0000209g0180' => 'nta', 'Nitab4.5_0000244g0440' => 'nta', 'Nitab4.5_0000525g0220' => 'nta', 'Nitab4.5_0001597g0020' => 'nta', 'Nitab4.5_0001878g0040' => 'nta', 'Nitab4.5_0001878g0060' => 'nta', 'Nitab4.5_0002838g0100' => 'nta', 'Nitab4.5_0002838g0120' => 'nta', 'Nitab4.5_0004798g0030' => 'nta', 'Nitab4.5_0005420g0010' => 'nta', 'Nitab4.5_0005507g0010' => 'nta', 'Nitab4.5_0005574g0020' => 'nta', 'Nitab4.5_0005838g0010' => 'nta', 'Nitab4.5_0010580g0020' => 'nta', 'Nn1g02599' => 'nnu', 'Nn1g02608' => 'nnu', 'Nn3g17742' => 'nnu', 'Nn3g19534' => 'nnu', 'Nn3g19535' => 'nnu', 'Oeu008790.1' => 'oeu', 'Oeu008792.1' => 'oeu', 'Oeu032590.1' => 'oeu', 'Oeu035349.1' => 'oeu', 'Oeu049791.1' => 'oeu', 'Os01g0774500' => 'osa', 'Os03g0628800' => 'osa', 'Os03g0798600' => 'osa', 'Os05g0508800' => 'osa', 'Peaxi162Scf00036g02018' => 'pax', 'Peaxi162Scf00578g00032' => 'pax', 'Peaxi162Scf00578g00317' => 'pax', 'Peaxi162Scf00785g00114' => 'pax', 'Peaxi162Scf00813g00119' => 'pax', 'Peaxi162Scf00906g00227' => 'pax', 'PGR004G0875' => 'pgr', 'PGR004G2424' => 'pgr', 'PGR031G1239' => 'pgr', 'PGR031G2474' => 'pgr', 'PGR044G0423' => 'pgr', 'PGSC0003DMG400001128' => 'stu', 'PGSC0003DMG400007336' => 'stu', 'PGSC0003DMG400016318' => 'stu', 'PGSC0003DMG400016319' => 'stu', 'PGSC0003DMG400018074' => 'stu', 'Phvul.001G157700' => 'pvu', 'Phvul.002G148550' => 'pvu', 'Phvul.002G320200' => 'pvu', 'Phvul.003G089200' => 'pvu', 'Phvul.007G126000' => 'pvu', 'Phvul.007G126100' => 'pvu', 'Phvul.007G178000' => 'pvu', 'Phvul.007G178200' => 'pvu', 'Potri.002G043000' => 'ptr', 'Potri.002G043200' => 'ptr', 'Potri.003G123750' => 'ptr', 'Potri.005G055401' => 'ptr', 'Potri.005G219700' => 'ptr', 'Potri.005G220000' => 'ptr', 'Potri.008G161901' => 'ptr', 'Potri.008G162000' => 'ptr', 'Potri.008G162400' => 'ptr', 'Potri.010G076900' => 'ptr', 'Pp3c12_9180' => 'ppa', 'Pp3c13_19770' => 'ppa', 'Pp3c14_22950' => 'ppa', 'Pp3c16_12160' => 'ppa', 'Pp3c27_7820' => 'ppa', 'Pp3c2_3490' => 'ppa', 'Pp3c3_23700' => 'ppa', 'Pp3c3_36520' => 'ppa', 'Pp3c4_15250' => 'ppa', 'PRCOL_00007002' => 'pco', 'Prupe.1G030600' => 'ppe', 'Prupe.1G030700' => 'ppe', 'Prupe.6G345200' => 'ppe', 'Prupe.8G230300' => 'ppe', 'Prupe.8G230500' => 'ppe', 'Psat3g059600' => 'psa', 'Psat5g200920' => 'psa', 'Psat6g056440' => 'psa', 'Psat6g057360' => 'psa', 'Psat6g134120' => 'psa', 'Psat6g134160' => 'psa', 'Psat7g008640' => 'psa', 'Psat7g185240' => 'psa', 'PSO017G1330' => 'pso', 'PSO063G6097' => 'pso', 'PSO170G0835' => 'pso', 'PSO170G2499' => 'pso', 'PSO210G5058' => 'pso', 'PSO210G6154' => 'pso', 'PSO585G0031' => 'pso', 'PSO832G0264' => 'pso', 'PSO832G4288' => 'pso', 'QL03p027355' => 'qlo', 'QL03p027430' => 'qlo', 'QL04p081380' => 'qlo', 'QL06p015642' => 'qlo', 'QL06p015650' => 'qlo', 'QL06p015686' => 'qlo', 'QL12p042927' => 'qlo', 'QL93p1863_0035' => 'qlo', 'RcHm_v2.0_Chr3g0450581' => 'rch', 'RcHm_v2.0_Chr4g0390371' => 'rch', 'RcHm_v2.0_Chr4g0390381' => 'rch', 'RcHm_v2.0_Chr4g0390491' => 'rch', 'RcHm_v2.0_Chr4g0390501' => 'rch', 'RcHm_v2.0_Chr6g0289231' => 'rch', 'Rhsim04G0190400' => 'rsi', 'Rhsim04G0190500' => 'rsi', 'Rhsim04G0190600' => 'rsi', 'Rhsim13G0031400' => 'rsi', 'Rhsim13G0165600' => 'rsi', 'RhsimUnG0114600' => 'rsi', 'RhsimUnG0114700' => 'rsi', 'Sabra02G0034800' => 'sbr', 'Sabra02G0035100' => 'sbr', 'Sabra05G0168600' => 'sbr', 'Sabra05G0168800' => 'sbr', 'Sabra08G0123700' => 'sbr', 'Sabra10G0031900' => 'sbr', 'Sabra13G0039000' => 'sbr', 'SalBow2G0782' => 'sbo', 'SalBow2G1403' => 'sbo', 'SalBow4G0074' => 'sbo', 'SalBow4G2635' => 'sbo', 'SalBow5G3010' => 'sbo', 'Sc05g0000870' => 'sci', 'Sc05g0000890' => 'sci', 'Sc13g0005000' => 'sci', 'Sc13g0005030' => 'sci', 'Sc19g0003790' => 'sci', 'Sc19g0003800' => 'sci', 'Sed0003467' => 'sed', 'Sed0009355' => 'sed', 'Sed0009894' => 'sed', 'Sed0011972' => 'sed', 'Sed0021483' => 'sed', 'Sed0021750' => 'sed', 'Sed0026279' => 'sed', 'SEGI_05312' => 'sgi', 'SEGI_10112' => 'sgi', 'SEGI_15835' => 'sgi', 'SEGI_30386' => 'sgi', 'SEGI_34122' => 'sgi', 'SEGI_35063' => 'sgi', 'SGA_v2.0_scaffold101G29794' => 'sas', 'SGA_v2.0_scaffold1G00573' => 'sas', 'SGA_v2.0_scaffold79G25637' => 'sas', 'SGA_v2.0_scaffold88G27283' => 'sas', 'SGA_v2.0_scaffold88G27285' => 'sas', 'SGA_v2.0_scaffold88G27331' => 'sas', 'SHI09937' => 'shi', 'SMO119G0302' => 'smo', 'SMO137G0231' => 'smo', 'SMO367G1151' => 'smo', 'Solyc02g082000.3' => 'sly', 'Solyc06g031670.3' => 'sly', 'Solyc06g053810.3' => 'sly', 'Solyc07g025457.1' => 'sly', 'Solyc08g059740.1' => 'sly', 'Solyc08g059750.3' => 'sly', 'Solyc09g083370.3' => 'sly', 'Solyc12g038950.3' => 'sly', 'Sopen02g026630' => 'spe', 'Sopen06g018930' => 'spe', 'Sopen06g018940' => 'spe', 'Sopen08g009460' => 'spe', 'Sopen09g032290' => 'spe', 'Sp1g03080' => 'spa', 'Sp1g03090' => 'spa', 'Sp1g05480' => 'spa', 'Sp2g07860' => 'spa', 'Sp2g08430' => 'spa', 'Sp2g08440' => 'spa', 'Sp2g26200' => 'spa', 'Sp4g13170' => 'spa', 'Sp6g33840' => 'spa', 'SpUn1204_0010' => 'spa', 'TAR365G0908' => 'tar', 'TAR381G1270' => 'tar', 'TAR381G1651' => 'tar', 'TAR625G1131' => 'tar', 'TAR633G0962' => 'tar', 'TAR633G1729' => 'tar', 'TAR633G1864' => 'tar', 'TAR636G0221' => 'tar', 'TAR636G0314' => 'tar', 'TAR636G3202' => 'tar', 'THA.LOC104800805' => 'tha', 'THA.LOC104801096' => 'tha', 'THA.LOC104801555' => 'tha', 'THA.LOC104808491' => 'tha', 'THA.LOC104808595' => 'tha', 'THA.LOC104815985' => 'tha', 'THA.LOC104822250' => 'tha', 'THA.LOC104826071' => 'tha', 'Thecc.01G265200' => 'tca', 'Thecc.01G265300' => 'tca', 'Thecc.01G265700' => 'tca', 'Thecc.03G109100' => 'tca', 'Thecc.04G245900' => 'tca', 'Thecc.04G246000' => 'tca', 'Thhalv10003334m.g' => 'esa', 'Thhalv10005508m.g' => 'esa', 'Thhalv10005643m.g' => 'esa', 'Thhalv10007316m.g' => 'esa', 'Thhalv10009006m.g' => 'esa', 'Thhalv10009309m.g' => 'esa', 'Thhalv10014917m.g' => 'esa', 'Thhalv10014919m.g' => 'esa', 'Thhalv10015393m.g' => 'esa', 'Thhalv10016515m.g' => 'esa', 'Thhalv10029242m.g' => 'esa', 'TPR.G16654' => 'tpr', 'TPR.G20589' => 'tpr', 'TPR.G23029' => 'tpr', 'TPR.G27731' => 'tpr', 'TPR.G28889' => 'tpr', 'TPR.G28899' => 'tpr', 'TPR.G30846' => 'tpr', 'TPR.G5452' => 'tpr', 'TPR.G5713' => 'tpr', 'TPR.G9046' => 'tpr', 'TPR.G9061' => 'tpr', 'TWI09G1075' => 'twi', 'TWI12G0806' => 'twi', 'TWI18G0108' => 'twi', 'TWI53G1361' => 'twi', 'TWI73G0185' => 'twi', 'TWI73G0427' => 'twi', 'unitig_37.g12001' => 'ugi', 'unitig_747.g21660' => 'ugi', 'unitig_748.g7232' => 'ugi', 'unitig_748.g7315' => 'ugi', 'unitig_85.g27262' => 'ugi', 'unitig_92.g28220' => 'ugi', 'vmacro02632' => 'vma', 'vmacro08410' => 'vma', 'vmacro08411' => 'vma', 'vmacro15407' => 'vma', 'VMungo0251G3619' => 'vmu', 'VMungo0720G1204' => 'vmu', 'VMungo0720G1918' => 'vmu', 'VMungo0720G2387' => 'vmu', 'VMungo0720G2961' => 'vmu', 'VMungo1215G2154' => 'vmu', 'VMungo1383G2411' => 'vmu', 'Zm00001eb051130' => 'zma', 'Zm00001eb116830' => 'zma', 'Zm00001eb116850' => 'zma', 'Zm00001eb151740' => 'zma', 'Zm00001eb292360' => 'zma', 'Zm00001eb301640' => 'zma' ), 'gf_id' => 'HOM05D000856', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000856' ), 'data_identifier' => 'HOM05D000856', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000856', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p00010' => 'bna', 'A03p04160' => 'bna', 'A03p17160' => 'bna', 'A04p23370' => 'bna', 'A05p14860' => 'bna', 'A08p37020' => 'bna', 'A09p08050' => 'bna', 'A09p66800' => 'bna', 'A09p67940' => 'bna', 'A10p02680' => 'bna', 'A10p05320' => 'bna', 'Aa31LG1G20560' => 'aar', 'Aa31LG1G20610' => 'aar', 'Aa31LG1G7810' => 'aar', 'Aa31LG5G3590' => 'aar', 'Aa31LG5G6140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3819' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4683' => 'aag', 'Actinidia04480' => 'ach', 'Actinidia05466' => 'ach', 'Actinidia08445' => 'ach', 'Actinidia21170' => 'ach', 'Actinidia24812' => 'ach', 'Actinidia24951' => 'ach', 'Actinidia40088' => 'ach', 'Ah.02g111660' => 'amhyb', 'Ah.11g048900' => 'amhyb', 'Ah.11g049910' => 'amhyb', 'AL1G13870' => 'aly', 'AL1G13880' => 'aly', 'AL1G16760' => 'aly', 'AL390U10020' => 'aly', 'AL4G25520' => 'aly', 'AL6G19890' => 'aly', 'AL6G19900' => 'aly', 'AL6G19910' => 'aly', 'AL8G40100' => 'aly', 'Aqoxy2G03562' => 'aox', 'Aqoxy5G00316' => 'aox', 'Aqoxy5G00926' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1628KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1H403S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2FU6SJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.882I6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8YRY2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YN1SN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AF70II' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZA8L1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F916KL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHRD8H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KTZ8QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S22EMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8M29T' => 'arhy', 'AT1G04270' => 'ath', 'AT1G04280' => 'ath', 'AT1G06750' => 'ath', 'AT1G33850' => 'ath', 'AT2G30630' => 'ath', 'AT5G09490' => 'ath', 'AT5G09500' => 'ath', 'AT5G09510' => 'ath', 'AT5G43640' => 'ath', 'AT5G63070' => 'ath', 'ATR0605G315' => 'atr', 'Atru.chr11.175' => 'acertr', 'Atru.chr11.653' => 'acertr', 'Atru.chr3.1616' => 'acertr', 'Atru.chr4.2230' => 'acertr', 'Atru.chr4.2232' => 'acertr', 'Atru.chr5.1598' => 'acertr', 'Atru.chr5.1600' => 'acertr', 'Atru.chr5.2188' => 'acertr', 'AUR62008326' => 'cqu', 'AUR62011922' => 'cqu', 'AUR62011924' => 'cqu', 'AUR62021771' => 'cqu', 'AUR62032237' => 'cqu', 'AUR62032240' => 'cqu', 'BcaB01g05572' => 'bca', 'BcaB02g10337' => 'bca', 'BcaB04g19944' => 'bca', 'BcaB05g21548' => 'bca', 'BcaB05g21549' => 'bca', 'BcaB05g23227' => 'bca', 'BcaB06g26256' => 'bca', 'BcaB06g26257' => 'bca', 'BcaB06g28379' => 'bca', 'BcaC02g11159' => 'bca', 'BcaC03g13258' => 'bca', 'BcaC03g13259' => 'bca', 'BcaC05g24456' => 'bca', 'BcaC05g24457' => 'bca', 'BcaC07g36922' => 'bca', 'BcaC07g36923' => 'bca', 'BcaC07g42050' => 'bca', 'BcaC07g42176' => 'bca', 'BcaC07g42195' => 'bca', 'BcaC07g42196' => 'bca', 'BcaNung06674' => 'bca', 'BolC2t06351H' => 'bol', 'BolC2t06352H' => 'bol', 'BolC3t12993H' => 'bol', 'BolC4t23525H' => 'bol', 'BolC4t27475H' => 'bol', 'BolC5t29025H' => 'bol', 'BolC5t29026H' => 'bol', 'BolC8t46898H' => 'bol', 'BolC8t46899H' => 'bol', 'BolC8t52630H' => 'bol', 'BolC8t52765H' => 'bol', 'BolC9t53824H' => 'bol', 'BraA03t09760Z' => 'bra', 'BraA03t10990Z' => 'bra', 'BraA05t20413Z' => 'bra', 'BraA08t35602Z' => 'bra', 'BraA09t36458Z' => 'bra', 'BraA09t42018Z' => 'bra', 'BraA09t42129Z' => 'bra', 'BraA10t42536Z' => 'bra', 'BraA10t42537Z' => 'bra', 'C01p10690' => 'bna', 'C02p03890' => 'bna', 'C02p03900' => 'bna', 'C03p04620' => 'bna', 'C04p19870' => 'bna', 'C04p59670' => 'bna', 'C05p02460' => 'bna', 'C05p02470' => 'bna', 'C08p00980' => 'bna', 'C08p00990' => 'bna', 'C08p51030' => 'bna', 'C08p52360' => 'bna', 'C09p09120' => 'bna', 'CAN.G19.15' => 'can', 'CAN.G251.10' => 'can', 'CAN.G251.9' => 'can', 'CAN.G398.24' => 'can', 'CAN.G410.32' => 'can', 'CAN.G881.2' => 'can', 'CANSAT01G3025' => 'cansat', 'CANSAT78G1211' => 'cansat', 'CANSAT78G1218' => 'cansat', 'CANSAT78G1521' => 'cansat', 'CANSAT78G1670' => 'cansat', 'CARHR003600' => 'chi', 'CARHR003610' => 'chi', 'CARHR006290' => 'chi', 'CARHR006430' => 'chi', 'CARHR124110' => 'chi', 'CARHR203870' => 'chi', 'CARHR203880' => 'chi', 'CARHR203890' => 'chi', 'CARHR276880' => 'chi', 'Carub.0001s0346' => 'cru', 'Carub.0001s0347' => 'cru', 'Carub.0001s0607' => 'cru', 'Carub.0003s2768' => 'cru', 'Carub.0003s2769' => 'cru', 'Carub.0004s1178' => 'cru', 'Carub.0006s0806' => 'cru', 'Carub.0006s0807' => 'cru', 'Carub.0006s0808' => 'cru', 'Carub.0008s0501' => 'cru', 'Carub.0008s2379' => 'cru', 'Ca_08655_v3' => 'car', 'Ca_08922_v3' => 'car', 'Ca_08923_v3' => 'car', 'Ca_09119_v3' => 'car', 'Ca_09703_v3' => 'car', 'Ca_09705_v3' => 'car', 'Ca_09835_v3' => 'car', 'Ca_26403_v3' => 'car', 'Ca_30719_v3' => 'car', 'CBR_g17958' => 'cbr', 'CBR_g40516' => 'cbr', 'Cc00_g05350' => 'ccan', 'Cc01_g18690' => 'ccan', 'Cc03_g04830' => 'ccan', 'Cc03_g04850' => 'ccan', 'CDE02G4469' => 'cde', 'CDE06G0883' => 'cde', 'CDE06G1295' => 'cde', 'CDE06G1390' => 'cde', 'CDE07G0584' => 'cde', 'CDE07G1084' => 'cde', 'CDE08G1259' => 'cde', 'Cfa002341' => 'cfa', 'Cfa024337' => 'cfa', 'Ciclev10004749m.g' => 'ccl', 'Ciclev10006127m.g' => 'ccl', 'Ciclev10019720m.g' => 'ccl', 'Ciclev10022652m.g' => 'ccl', 'CiPaw.01G190400' => 'cil', 'CiPaw.01G190500' => 'cil', 'CiPaw.02G116400' => 'cil', 'CiPaw.02G116500' => 'cil', 'CiPaw.04G183000' => 'cil', 'CiPaw.04G183300' => 'cil', 'ClCG05G004610' => 'cla', 'ClCG05G004620' => 'cla', 'ClCG06G006730' => 'cla', 'ClCG06G006740' => 'cla', 'ClCG11G003690' => 'cla', 'COL.COLO4_08276' => 'col', 'COL.COLO4_08277' => 'col', 'COL.COLO4_15787' => 'col', 'COL.COLO4_15789' => 'col', 'Cpa.g.c44815' => 'cpa', 'Cpa.g.sc52.144' => 'cpa', 'Cpa.g.sc58.46' => 'cpa', 'Cpa.g.sc58.47' => 'cpa', 'Cre08.g360900' => 'cre', 'CsaV3_2G013030' => 'csa', 'CsaV3_2G013050' => 'csa', 'CsaV3_2G015620' => 'csa', 'CsaV3_3G012590' => 'csa', 'CsaV3_3G012600' => 'csa', 'CSS0001641' => 'camsi', 'CSS0008310' => 'camsi', 'CSS0013011' => 'camsi', 'CSS0017147' => 'camsi', 'CSS0022970' => 'camsi', 'CSS0025655' => 'camsi', 'CSS0028665' => 'camsi', 'CSS0029117' => 'camsi', 'CSS0032024' => 'camsi', 'CSS0039681' => 'camsi', 'CSS0046516' => 'camsi', 'CSS0050307' => 'camsi', 'DCAR_005871' => 'dca', 'DCAR_007342' => 'dca', 'DCAR_024228' => 'dca', 'DCAR_027277' => 'dca', 'DCAR_030718' => 'dca', 'Dinv20287' => 'din', 'Dinv22461' => 'din', 'Dinv22464' => 'din', 'Dinv29912' => 'din', 'Dinv29913' => 'din', 'Dinv34580' => 'din', 'Dinv34582' => 'din', 'Dinv44632' => 'din', 'Duzib052G0266' => 'dzi', 'Duzib133G0907' => 'dzi', 'Duzib133G1034' => 'dzi', 'Duzib138G0207' => 'dzi', 'Duzib138G0491' => 'dzi', 'Duzib151G0812' => 'dzi', 'Duzib151G1166' => 'dzi', 'Duzib168G0192' => 'dzi', 'Duzib211G0077' => 'dzi', 'Duzib212G0429' => 'dzi', 'Duzib212G0472' => 'dzi', 'ECA233G2617' => 'eca', 'ECA236G4188' => 'eca', 'ECA240G0936' => 'eca', 'ECA240G1129' => 'eca', 'ECA247G0623' => 'eca', 'EL10Ac5g10451' => 'bvu', 'EL10Ac5g10453' => 'bvu', 'EL10Ac5g10894' => 'bvu', 'Eucgr.H00192' => 'egr', 'Eucgr.H00193' => 'egr', 'Eucgr.H00194' => 'egr', 'Eucgr.J01562' => 'egr', 'Eucgr.K03301' => 'egr', 'FAN02G0632' => 'fan', 'FAN05G5378' => 'fan', 'FAN09G3247' => 'fan', 'FAN12G0435' => 'fan', 'FAN12G2426' => 'fan', 'FAN14G1707' => 'fan', 'FAN14G4725' => 'fan', 'FAN15G2071' => 'fan', 'FAN17G3065' => 'fan', 'FAN19G1376' => 'fan', 'FAN20G0354' => 'fan', 'FAN20G2429' => 'fan', 'FAN20G2658' => 'fan', 'FAN24G2343' => 'fan', 'FAN27G2362' => 'fan', 'FAN28G1765' => 'fan', 'FvH4_1g16020' => 'fve', 'FvH4_2g04890' => 'fve', 'FvH4_2g22270' => 'fve', 'FvH4_4g02630' => 'fve', 'FvH4_4g02640' => 'fve', 'FvH4_6g02650' => 'fve', 'Glyma.02G140600' => 'gma', 'Glyma.03G159900' => 'gma', 'Glyma.05G234800' => 'gma', 'Glyma.07G269600' => 'gma', 'Glyma.08G042300' => 'gma', 'Glyma.10G033500' => 'gma', 'Glyma.10G185200' => 'gma', 'Glyma.17G004300' => 'gma', 'Glyma.19G161900' => 'gma', 'Glyma.20G205100' => 'gma', 'Glyma.20G205200' => 'gma', 'Gohir.A01G139101' => 'ghi', 'Gohir.A02G035600' => 'ghi', 'Gohir.A02G117901' => 'ghi', 'Gohir.A07G210100' => 'ghi', 'Gohir.A07G210200' => 'ghi', 'Gohir.A08G061100' => 'ghi', 'Gohir.A09G223000' => 'ghi', 'Gohir.A09G223100' => 'ghi', 'Gohir.A10G113900' => 'ghi', 'Gohir.A10G114000' => 'ghi', 'Gohir.D02G042300' => 'ghi', 'Gohir.D07G216100' => 'ghi', 'Gohir.D07G216200' => 'ghi', 'Gohir.D08G070400' => 'ghi', 'Gohir.D09G225000' => 'ghi', 'Gohir.D09G225100' => 'ghi', 'Gohir.D10G152300' => 'ghi', 'Gohir.D10G153200' => 'ghi', 'Gohir.D11G133701' => 'ghi', 'Gorai.004G074100' => 'gra', 'Gorai.005G046800' => 'gra', 'Gorai.006G246500' => 'gra', 'Gorai.006G246600' => 'gra', 'Gorai.007G142900' => 'gra', 'Gorai.011G171000' => 'gra', 'Gorai.011G171100' => 'gra', 'Gorai.013G104300' => 'gra', 'Gorai.013G104400' => 'gra', 'GSVIVG01000754001' => 'vvi', 'GSVIVG01000756001' => 'vvi', 'GSVIVG01010903001' => 'vvi', 'GSVIVG01017623001' => 'vvi', 'GSVIVG01018113001' => 'vvi', 'GSVIVG01018116001' => 'vvi', 'GSVIVG01018118001' => 'vvi', 'HanXRQChr03g0076211' => 'han', 'HanXRQChr03g0092431' => 'han', 'HanXRQChr03g0092441' => 'han', 'HanXRQChr03g0092591' => 'han', 'HanXRQChr03g0092671' => 'han', 'HanXRQChr03g0092681' => 'han', 'HanXRQChr03g0092691' => 'han', 'HanXRQChr03g0092701' => 'han', 'HanXRQChr03g0092721' => 'han', 'HanXRQChr03g0092731' => 'han', 'HanXRQChr04g0113681' => 'han', 'HanXRQChr10g0281371' => 'han', 'HanXRQChr11g0337141' => 'han', 'HanXRQChr13g0424521' => 'han', 'HanXRQChr13g0424531' => 'han', 'HanXRQChr13g0424541' => 'han', 'HanXRQChr16g0498221' => 'han', 'Haze_04377' => 'cav', 'Haze_11298' => 'cav', 'Haze_24547' => 'cav', 'Haze_24550' => 'cav', 'Haze_26587' => 'cav', 'Hma1.2p1_0650F.1_g195410' => 'hma', 'Hma1.2p1_0893F.1_g233470' => 'hma', 'HPP92_006508' => 'vpl', 'HPP92_024780' => 'vpl', 'Hund02688' => 'sun', 'Hund09380' => 'sun', 'Hund09381' => 'sun', 'Hund09832' => 'sun', 'Hund09833' => 'sun', 'Hund11351' => 'sun', 'Hund11513' => 'sun', 'Lalb_Chr06g0162591' => 'lal', 'Lalb_Chr06g0162601' => 'lal', 'Lalb_Chr06g0169321' => 'lal', 'Lalb_Chr09g0330951' => 'lal', 'Lalb_Chr16g0387631' => 'lal', 'Lalb_Chr21g0306241' => 'lal', 'Lalb_Chr25g0290051' => 'lal', 'Lalb_Chr25g0290061' => 'lal', 'Lalb_Chr25g0290071' => 'lal', 'Lj1g0003876' => 'lja', 'Lj1P1207T36' => 'lonja', 'Lj2C1156G12' => 'lonja', 'Lj3A793G39' => 'lonja', 'Lj3C580G2' => 'lonja', 'Lj3C780G2' => 'lonja', 'Lj3C780T4' => 'lonja', 'Lj3C793G9' => 'lonja', 'Lj4g0012960' => 'lja', 'Lj5g0021252' => 'lja', 'Lj5g0021484' => 'lja', 'Lj5g0024528' => 'lja', 'Lj6A399T12' => 'lonja', 'Lj6A656G65' => 'lonja', 'Lsat_1_v5_gn_3_125500' => 'lsa', 'Lsat_1_v5_gn_3_125540' => 'lsa', 'Lsat_1_v5_gn_5_72701' => 'lsa', 'Lsat_1_v5_gn_8_91560' => 'lsa', 'Lsat_1_v5_gn_9_9640' => 'lsa', 'Manes.01G200600' => 'mes', 'Manes.01G200700' => 'mes', 'Manes.03G168900' => 'mes', 'Manes.03G169000' => 'mes', 'Manes.05G085801' => 'mes', 'Manes.05G086200' => 'mes', 'Manes.15G036700' => 'mes', 'Manes.15G036900' => 'mes', 'Mapoly0004s0172' => 'mpo', 'Mapoly0023s0001' => 'mpo', 'Mapoly0142s0012' => 'mpo', 'MBI01_g32854_MAGBIO' => 'mbi', 'MBI11_g24427_MAGBIO' => 'mbi', 'MBI11_g47319_MAGBIO' => 'mbi', 'MCO01G433' => 'mco', 'MD00G1187800' => 'mdo', 'MD04G1226500' => 'mdo', 'MD05G1203900' => 'mdo', 'MD10G1191100' => 'mdo', 'MD12G1243500' => 'mdo', 'MD13G1207000' => 'mdo', 'MD13G1207100' => 'mdo', 'MD16G1208600' => 'mdo', 'Medtr1g050352' => 'mtr', 'Medtr1g070385' => 'mtr', 'Medtr1g070450' => 'mtr', 'Medtr1g075200' => 'mtr', 'Medtr1g075250' => 'mtr', 'Medtr1g075260' => 'mtr', 'Medtr1g475250' => 'mtr', 'Medtr4g075450' => 'mtr', 'Medtr7g096300' => 'mtr', 'Medtr8g105110' => 'mtr', 'MELO3C006470.2' => 'cme', 'MELO3C006471.2' => 'cme', 'MELO3C020772.2' => 'cme', 'MELO3C026780.2' => 'cme', 'MELO3C026781.2' => 'cme', 'Migut.D00390' => 'egut', 'Migut.G00435' => 'egut', 'Migut.G00436' => 'egut', 'Migut.G00718' => 'egut', 'MSTRG.21891' => 'ama', 'MSTRG.26910' => 'ama', 'MSTRG.4099' => 'ama', 'MSTRG.9925' => 'ama', 'Nitab4.5_0000165g0010' => 'nta', 'Nitab4.5_0000209g0180' => 'nta', 'Nitab4.5_0000244g0440' => 'nta', 'Nitab4.5_0000525g0220' => 'nta', 'Nitab4.5_0001597g0020' => 'nta', 'Nitab4.5_0001878g0040' => 'nta', 'Nitab4.5_0001878g0060' => 'nta', 'Nitab4.5_0002838g0100' => 'nta', 'Nitab4.5_0002838g0120' => 'nta', 'Nitab4.5_0004798g0030' => 'nta', 'Nitab4.5_0005420g0010' => 'nta', 'Nitab4.5_0005507g0010' => 'nta', 'Nitab4.5_0005574g0020' => 'nta', 'Nitab4.5_0005838g0010' => 'nta', 'Nitab4.5_0010580g0020' => 'nta', 'Nn1g02599' => 'nnu', 'Nn1g02608' => 'nnu', 'Nn3g17742' => 'nnu', 'Nn3g19534' => 'nnu', 'Nn3g19535' => 'nnu', 'Oeu008790.1' => 'oeu', 'Oeu008792.1' => 'oeu', 'Oeu032590.1' => 'oeu', 'Oeu035349.1' => 'oeu', 'Oeu049791.1' => 'oeu', 'Os01g0774500' => 'osa', 'Os03g0628800' => 'osa', 'Os03g0798600' => 'osa', 'Os05g0508800' => 'osa', 'Peaxi162Scf00036g02018' => 'pax', 'Peaxi162Scf00578g00032' => 'pax', 'Peaxi162Scf00578g00317' => 'pax', 'Peaxi162Scf00785g00114' => 'pax', 'Peaxi162Scf00813g00119' => 'pax', 'Peaxi162Scf00906g00227' => 'pax', 'PGR004G0875' => 'pgr', 'PGR004G2424' => 'pgr', 'PGR031G1239' => 'pgr', 'PGR031G2474' => 'pgr', 'PGR044G0423' => 'pgr', 'PGSC0003DMG400001128' => 'stu', 'PGSC0003DMG400007336' => 'stu', 'PGSC0003DMG400016318' => 'stu', 'PGSC0003DMG400016319' => 'stu', 'PGSC0003DMG400018074' => 'stu', 'Phvul.001G157700' => 'pvu', 'Phvul.002G148550' => 'pvu', 'Phvul.002G320200' => 'pvu', 'Phvul.003G089200' => 'pvu', 'Phvul.007G126000' => 'pvu', 'Phvul.007G126100' => 'pvu', 'Phvul.007G178000' => 'pvu', 'Phvul.007G178200' => 'pvu', 'Potri.002G043000' => 'ptr', 'Potri.002G043200' => 'ptr', 'Potri.003G123750' => 'ptr', 'Potri.005G055401' => 'ptr', 'Potri.005G219700' => 'ptr', 'Potri.005G220000' => 'ptr', 'Potri.008G161901' => 'ptr', 'Potri.008G162000' => 'ptr', 'Potri.008G162400' => 'ptr', 'Potri.010G076900' => 'ptr', 'Pp3c12_9180' => 'ppa', 'Pp3c13_19770' => 'ppa', 'Pp3c14_22950' => 'ppa', 'Pp3c16_12160' => 'ppa', 'Pp3c27_7820' => 'ppa', 'Pp3c2_3490' => 'ppa', 'Pp3c3_23700' => 'ppa', 'Pp3c3_36520' => 'ppa', 'Pp3c4_15250' => 'ppa', 'PRCOL_00007002' => 'pco', 'Prupe.1G030600' => 'ppe', 'Prupe.1G030700' => 'ppe', 'Prupe.6G345200' => 'ppe', 'Prupe.8G230300' => 'ppe', 'Prupe.8G230500' => 'ppe', 'Psat3g059600' => 'psa', 'Psat5g200920' => 'psa', 'Psat6g056440' => 'psa', 'Psat6g057360' => 'psa', 'Psat6g134120' => 'psa', 'Psat6g134160' => 'psa', 'Psat7g008640' => 'psa', 'Psat7g185240' => 'psa', 'PSO017G1330' => 'pso', 'PSO063G6097' => 'pso', 'PSO170G0835' => 'pso', 'PSO170G2499' => 'pso', 'PSO210G5058' => 'pso', 'PSO210G6154' => 'pso', 'PSO585G0031' => 'pso', 'PSO832G0264' => 'pso', 'PSO832G4288' => 'pso', 'QL03p027355' => 'qlo', 'QL03p027430' => 'qlo', 'QL04p081380' => 'qlo', 'QL06p015642' => 'qlo', 'QL06p015650' => 'qlo', 'QL06p015686' => 'qlo', 'QL12p042927' => 'qlo', 'QL93p1863_0035' => 'qlo', 'RcHm_v2.0_Chr3g0450581' => 'rch', 'RcHm_v2.0_Chr4g0390371' => 'rch', 'RcHm_v2.0_Chr4g0390381' => 'rch', 'RcHm_v2.0_Chr4g0390491' => 'rch', 'RcHm_v2.0_Chr4g0390501' => 'rch', 'RcHm_v2.0_Chr6g0289231' => 'rch', 'Rhsim04G0190400' => 'rsi', 'Rhsim04G0190500' => 'rsi', 'Rhsim04G0190600' => 'rsi', 'Rhsim13G0031400' => 'rsi', 'Rhsim13G0165600' => 'rsi', 'RhsimUnG0114600' => 'rsi', 'RhsimUnG0114700' => 'rsi', 'Sabra02G0034800' => 'sbr', 'Sabra02G0035100' => 'sbr', 'Sabra05G0168600' => 'sbr', 'Sabra05G0168800' => 'sbr', 'Sabra08G0123700' => 'sbr', 'Sabra10G0031900' => 'sbr', 'Sabra13G0039000' => 'sbr', 'SalBow2G0782' => 'sbo', 'SalBow2G1403' => 'sbo', 'SalBow4G0074' => 'sbo', 'SalBow4G2635' => 'sbo', 'SalBow5G3010' => 'sbo', 'Sc05g0000870' => 'sci', 'Sc05g0000890' => 'sci', 'Sc13g0005000' => 'sci', 'Sc13g0005030' => 'sci', 'Sc19g0003790' => 'sci', 'Sc19g0003800' => 'sci', 'Sed0003467' => 'sed', 'Sed0009355' => 'sed', 'Sed0009894' => 'sed', 'Sed0011972' => 'sed', 'Sed0021483' => 'sed', 'Sed0021750' => 'sed', 'Sed0026279' => 'sed', 'SEGI_05312' => 'sgi', 'SEGI_10112' => 'sgi', 'SEGI_15835' => 'sgi', 'SEGI_30386' => 'sgi', 'SEGI_34122' => 'sgi', 'SEGI_35063' => 'sgi', 'SGA_v2.0_scaffold101G29794' => 'sas', 'SGA_v2.0_scaffold1G00573' => 'sas', 'SGA_v2.0_scaffold79G25637' => 'sas', 'SGA_v2.0_scaffold88G27283' => 'sas', 'SGA_v2.0_scaffold88G27285' => 'sas', 'SGA_v2.0_scaffold88G27331' => 'sas', 'SHI09937' => 'shi', 'SMO119G0302' => 'smo', 'SMO137G0231' => 'smo', 'SMO367G1151' => 'smo', 'Solyc02g082000.3' => 'sly', 'Solyc06g031670.3' => 'sly', 'Solyc06g053810.3' => 'sly', 'Solyc07g025457.1' => 'sly', 'Solyc08g059740.1' => 'sly', 'Solyc08g059750.3' => 'sly', 'Solyc09g083370.3' => 'sly', 'Solyc12g038950.3' => 'sly', 'Sopen02g026630' => 'spe', 'Sopen06g018930' => 'spe', 'Sopen06g018940' => 'spe', 'Sopen08g009460' => 'spe', 'Sopen09g032290' => 'spe', 'Sp1g03080' => 'spa', 'Sp1g03090' => 'spa', 'Sp1g05480' => 'spa', 'Sp2g07860' => 'spa', 'Sp2g08430' => 'spa', 'Sp2g08440' => 'spa', 'Sp2g26200' => 'spa', 'Sp4g13170' => 'spa', 'Sp6g33840' => 'spa', 'SpUn1204_0010' => 'spa', 'TAR365G0908' => 'tar', 'TAR381G1270' => 'tar', 'TAR381G1651' => 'tar', 'TAR625G1131' => 'tar', 'TAR633G0962' => 'tar', 'TAR633G1729' => 'tar', 'TAR633G1864' => 'tar', 'TAR636G0221' => 'tar', 'TAR636G0314' => 'tar', 'TAR636G3202' => 'tar', 'THA.LOC104800805' => 'tha', 'THA.LOC104801096' => 'tha', 'THA.LOC104801555' => 'tha', 'THA.LOC104808491' => 'tha', 'THA.LOC104808595' => 'tha', 'THA.LOC104815985' => 'tha', 'THA.LOC104822250' => 'tha', 'THA.LOC104826071' => 'tha', 'Thecc.01G265200' => 'tca', 'Thecc.01G265300' => 'tca', 'Thecc.01G265700' => 'tca', 'Thecc.03G109100' => 'tca', 'Thecc.04G245900' => 'tca', 'Thecc.04G246000' => 'tca', 'Thhalv10003334m.g' => 'esa', 'Thhalv10005508m.g' => 'esa', 'Thhalv10005643m.g' => 'esa', 'Thhalv10007316m.g' => 'esa', 'Thhalv10009006m.g' => 'esa', 'Thhalv10009309m.g' => 'esa', 'Thhalv10014917m.g' => 'esa', 'Thhalv10014919m.g' => 'esa', 'Thhalv10015393m.g' => 'esa', 'Thhalv10016515m.g' => 'esa', 'Thhalv10029242m.g' => 'esa', 'TPR.G16654' => 'tpr', 'TPR.G20589' => 'tpr', 'TPR.G23029' => 'tpr', 'TPR.G27731' => 'tpr', 'TPR.G28889' => 'tpr', 'TPR.G28899' => 'tpr', 'TPR.G30846' => 'tpr', 'TPR.G5452' => 'tpr', 'TPR.G5713' => 'tpr', 'TPR.G9046' => 'tpr', 'TPR.G9061' => 'tpr', 'TWI09G1075' => 'twi', 'TWI12G0806' => 'twi', 'TWI18G0108' => 'twi', 'TWI53G1361' => 'twi', 'TWI73G0185' => 'twi', 'TWI73G0427' => 'twi', 'unitig_37.g12001' => 'ugi', 'unitig_747.g21660' => 'ugi', 'unitig_748.g7232' => 'ugi', 'unitig_748.g7315' => 'ugi', 'unitig_85.g27262' => 'ugi', 'unitig_92.g28220' => 'ugi', 'vmacro02632' => 'vma', 'vmacro08410' => 'vma', 'vmacro08411' => 'vma', 'vmacro15407' => 'vma', 'VMungo0251G3619' => 'vmu', 'VMungo0720G1204' => 'vmu', 'VMungo0720G1918' => 'vmu', 'VMungo0720G2387' => 'vmu', 'VMungo0720G2961' => 'vmu', 'VMungo1215G2154' => 'vmu', 'VMungo1383G2411' => 'vmu', 'Zm00001eb051130' => 'zma', 'Zm00001eb116830' => 'zma', 'Zm00001eb116850' => 'zma', 'Zm00001eb151740' => 'zma', 'Zm00001eb292360' => 'zma', 'Zm00001eb301640' => 'zma' ) $gf_id = 'HOM05D000856' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000856' ) $data_identifier = 'HOM05D000856' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 13, 'ath' => (int) 10, 'atr' => (int) 1, 'acertr' => (int) 8, 'cqu' => (int) 6, 'bca' => (int) 21, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 11, 'car' => (int) 9, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 8, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 5, 'fan' => (int) 16, 'fve' => (int) 6, 'gma' => (int) 11, 'ghi' => (int) 19, 'gra' => (int) 9, 'vvi' => (int) 7, 'han' => (int) 17, 'cav' => (int) 5, 'hma' => (int) 2, 'vpl' => (int) 2, 'sun' => (int) 7, 'lal' => (int) 9, 'lja' => (int) 5, 'lonja' => (int) 9, 'lsa' => (int) 5, 'mes' => (int) 8, 'mpo' => (int) 3, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 10, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 15, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 9, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 9, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 6, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 5, 'spa' => (int) 10, 'tar' => (int) 10, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 11, 'tpr' => (int) 11, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 4, 'vmu' => (int) 7, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb301640' $species_info = array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ) $local_species = 'ppa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000856', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p00010' => 'bna', 'A03p04160' => 'bna', 'A03p17160' => 'bna', 'A04p23370' => 'bna', 'A05p14860' => 'bna', 'A08p37020' => 'bna', 'A09p08050' => 'bna', 'A09p66800' => 'bna', 'A09p67940' => 'bna', 'A10p02680' => 'bna', 'A10p05320' => 'bna', 'Aa31LG1G20560' => 'aar', 'Aa31LG1G20610' => 'aar', 'Aa31LG1G7810' => 'aar', 'Aa31LG5G3590' => 'aar', 'Aa31LG5G6140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3819' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4683' => 'aag', 'Actinidia04480' => 'ach', 'Actinidia05466' => 'ach', 'Actinidia08445' => 'ach', 'Actinidia21170' => 'ach', 'Actinidia24812' => 'ach', 'Actinidia24951' => 'ach', 'Actinidia40088' => 'ach', 'Ah.02g111660' => 'amhyb', 'Ah.11g048900' => 'amhyb', 'Ah.11g049910' => 'amhyb', 'AL1G13870' => 'aly', 'AL1G13880' => 'aly', 'AL1G16760' => 'aly', 'AL390U10020' => 'aly', 'AL4G25520' => 'aly', 'AL6G19890' => 'aly', 'AL6G19900' => 'aly', 'AL6G19910' => 'aly', 'AL8G40100' => 'aly', 'Aqoxy2G03562' => 'aox', 'Aqoxy5G00316' => 'aox', 'Aqoxy5G00926' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1628KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1H403S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2FU6SJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.882I6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8YRY2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YN1SN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AF70II' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZA8L1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F916KL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHRD8H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KTZ8QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S22EMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8M29T' => 'arhy', 'AT1G04270' => 'ath', 'AT1G04280' => 'ath', 'AT1G06750' => 'ath', 'AT1G33850' => 'ath', 'AT2G30630' => 'ath', 'AT5G09490' => 'ath', 'AT5G09500' => 'ath', 'AT5G09510' => 'ath', 'AT5G43640' => 'ath', 'AT5G63070' => 'ath', 'ATR0605G315' => 'atr', 'Atru.chr11.175' => 'acertr', 'Atru.chr11.653' => 'acertr', 'Atru.chr3.1616' => 'acertr', 'Atru.chr4.2230' => 'acertr', 'Atru.chr4.2232' => 'acertr', 'Atru.chr5.1598' => 'acertr', 'Atru.chr5.1600' => 'acertr', 'Atru.chr5.2188' => 'acertr', 'AUR62008326' => 'cqu', 'AUR62011922' => 'cqu', 'AUR62011924' => 'cqu', 'AUR62021771' => 'cqu', 'AUR62032237' => 'cqu', 'AUR62032240' => 'cqu', 'BcaB01g05572' => 'bca', 'BcaB02g10337' => 'bca', 'BcaB04g19944' => 'bca', 'BcaB05g21548' => 'bca', 'BcaB05g21549' => 'bca', 'BcaB05g23227' => 'bca', 'BcaB06g26256' => 'bca', 'BcaB06g26257' => 'bca', 'BcaB06g28379' => 'bca', 'BcaC02g11159' => 'bca', 'BcaC03g13258' => 'bca', 'BcaC03g13259' => 'bca', 'BcaC05g24456' => 'bca', 'BcaC05g24457' => 'bca', 'BcaC07g36922' => 'bca', 'BcaC07g36923' => 'bca', 'BcaC07g42050' => 'bca', 'BcaC07g42176' => 'bca', 'BcaC07g42195' => 'bca', 'BcaC07g42196' => 'bca', 'BcaNung06674' => 'bca', 'BolC2t06351H' => 'bol', 'BolC2t06352H' => 'bol', 'BolC3t12993H' => 'bol', 'BolC4t23525H' => 'bol', 'BolC4t27475H' => 'bol', 'BolC5t29025H' => 'bol', 'BolC5t29026H' => 'bol', 'BolC8t46898H' => 'bol', 'BolC8t46899H' => 'bol', 'BolC8t52630H' => 'bol', 'BolC8t52765H' => 'bol', 'BolC9t53824H' => 'bol', 'BraA03t09760Z' => 'bra', 'BraA03t10990Z' => 'bra', 'BraA05t20413Z' => 'bra', 'BraA08t35602Z' => 'bra', 'BraA09t36458Z' => 'bra', 'BraA09t42018Z' => 'bra', 'BraA09t42129Z' => 'bra', 'BraA10t42536Z' => 'bra', 'BraA10t42537Z' => 'bra', 'C01p10690' => 'bna', 'C02p03890' => 'bna', 'C02p03900' => 'bna', 'C03p04620' => 'bna', 'C04p19870' => 'bna', 'C04p59670' => 'bna', 'C05p02460' => 'bna', 'C05p02470' => 'bna', 'C08p00980' => 'bna', 'C08p00990' => 'bna', 'C08p51030' => 'bna', 'C08p52360' => 'bna', 'C09p09120' => 'bna', 'CAN.G19.15' => 'can', 'CAN.G251.10' => 'can', 'CAN.G251.9' => 'can', 'CAN.G398.24' => 'can', 'CAN.G410.32' => 'can', 'CAN.G881.2' => 'can', 'CANSAT01G3025' => 'cansat', 'CANSAT78G1211' => 'cansat', 'CANSAT78G1218' => 'cansat', 'CANSAT78G1521' => 'cansat', 'CANSAT78G1670' => 'cansat', 'CARHR003600' => 'chi', 'CARHR003610' => 'chi', 'CARHR006290' => 'chi', 'CARHR006430' => 'chi', 'CARHR124110' => 'chi', 'CARHR203870' => 'chi', 'CARHR203880' => 'chi', 'CARHR203890' => 'chi', 'CARHR276880' => 'chi', 'Carub.0001s0346' => 'cru', 'Carub.0001s0347' => 'cru', 'Carub.0001s0607' => 'cru', 'Carub.0003s2768' => 'cru', 'Carub.0003s2769' => 'cru', 'Carub.0004s1178' => 'cru', 'Carub.0006s0806' => 'cru', 'Carub.0006s0807' => 'cru', 'Carub.0006s0808' => 'cru', 'Carub.0008s0501' => 'cru', 'Carub.0008s2379' => 'cru', 'Ca_08655_v3' => 'car', 'Ca_08922_v3' => 'car', 'Ca_08923_v3' => 'car', 'Ca_09119_v3' => 'car', 'Ca_09703_v3' => 'car', 'Ca_09705_v3' => 'car', 'Ca_09835_v3' => 'car', 'Ca_26403_v3' => 'car', 'Ca_30719_v3' => 'car', 'CBR_g17958' => 'cbr', 'CBR_g40516' => 'cbr', 'Cc00_g05350' => 'ccan', 'Cc01_g18690' => 'ccan', 'Cc03_g04830' => 'ccan', 'Cc03_g04850' => 'ccan', 'CDE02G4469' => 'cde', 'CDE06G0883' => 'cde', 'CDE06G1295' => 'cde', 'CDE06G1390' => 'cde', 'CDE07G0584' => 'cde', 'CDE07G1084' => 'cde', 'CDE08G1259' => 'cde', 'Cfa002341' => 'cfa', 'Cfa024337' => 'cfa', 'Ciclev10004749m.g' => 'ccl', 'Ciclev10006127m.g' => 'ccl', 'Ciclev10019720m.g' => 'ccl', 'Ciclev10022652m.g' => 'ccl', 'CiPaw.01G190400' => 'cil', 'CiPaw.01G190500' => 'cil', 'CiPaw.02G116400' => 'cil', 'CiPaw.02G116500' => 'cil', 'CiPaw.04G183000' => 'cil', 'CiPaw.04G183300' => 'cil', 'ClCG05G004610' => 'cla', 'ClCG05G004620' => 'cla', 'ClCG06G006730' => 'cla', 'ClCG06G006740' => 'cla', 'ClCG11G003690' => 'cla', 'COL.COLO4_08276' => 'col', 'COL.COLO4_08277' => 'col', 'COL.COLO4_15787' => 'col', 'COL.COLO4_15789' => 'col', 'Cpa.g.c44815' => 'cpa', 'Cpa.g.sc52.144' => 'cpa', 'Cpa.g.sc58.46' => 'cpa', 'Cpa.g.sc58.47' => 'cpa', 'Cre08.g360900' => 'cre', 'CsaV3_2G013030' => 'csa', 'CsaV3_2G013050' => 'csa', 'CsaV3_2G015620' => 'csa', 'CsaV3_3G012590' => 'csa', 'CsaV3_3G012600' => 'csa', 'CSS0001641' => 'camsi', 'CSS0008310' => 'camsi', 'CSS0013011' => 'camsi', 'CSS0017147' => 'camsi', 'CSS0022970' => 'camsi', 'CSS0025655' => 'camsi', 'CSS0028665' => 'camsi', 'CSS0029117' => 'camsi', 'CSS0032024' => 'camsi', 'CSS0039681' => 'camsi', 'CSS0046516' => 'camsi', 'CSS0050307' => 'camsi', 'DCAR_005871' => 'dca', 'DCAR_007342' => 'dca', 'DCAR_024228' => 'dca', 'DCAR_027277' => 'dca', 'DCAR_030718' => 'dca', 'Dinv20287' => 'din', 'Dinv22461' => 'din', 'Dinv22464' => 'din', 'Dinv29912' => 'din', 'Dinv29913' => 'din', 'Dinv34580' => 'din', 'Dinv34582' => 'din', 'Dinv44632' => 'din', 'Duzib052G0266' => 'dzi', 'Duzib133G0907' => 'dzi', 'Duzib133G1034' => 'dzi', 'Duzib138G0207' => 'dzi', 'Duzib138G0491' => 'dzi', 'Duzib151G0812' => 'dzi', 'Duzib151G1166' => 'dzi', 'Duzib168G0192' => 'dzi', 'Duzib211G0077' => 'dzi', 'Duzib212G0429' => 'dzi', 'Duzib212G0472' => 'dzi', 'ECA233G2617' => 'eca', 'ECA236G4188' => 'eca', 'ECA240G0936' => 'eca', 'ECA240G1129' => 'eca', 'ECA247G0623' => 'eca', 'EL10Ac5g10451' => 'bvu', 'EL10Ac5g10453' => 'bvu', 'EL10Ac5g10894' => 'bvu', 'Eucgr.H00192' => 'egr', 'Eucgr.H00193' => 'egr', 'Eucgr.H00194' => 'egr', 'Eucgr.J01562' => 'egr', 'Eucgr.K03301' => 'egr', 'FAN02G0632' => 'fan', 'FAN05G5378' => 'fan', 'FAN09G3247' => 'fan', 'FAN12G0435' => 'fan', 'FAN12G2426' => 'fan', 'FAN14G1707' => 'fan', 'FAN14G4725' => 'fan', 'FAN15G2071' => 'fan', 'FAN17G3065' => 'fan', 'FAN19G1376' => 'fan', 'FAN20G0354' => 'fan', 'FAN20G2429' => 'fan', 'FAN20G2658' => 'fan', 'FAN24G2343' => 'fan', 'FAN27G2362' => 'fan', 'FAN28G1765' => 'fan', 'FvH4_1g16020' => 'fve', 'FvH4_2g04890' => 'fve', 'FvH4_2g22270' => 'fve', 'FvH4_4g02630' => 'fve', 'FvH4_4g02640' => 'fve', 'FvH4_6g02650' => 'fve', 'Glyma.02G140600' => 'gma', 'Glyma.03G159900' => 'gma', 'Glyma.05G234800' => 'gma', 'Glyma.07G269600' => 'gma', 'Glyma.08G042300' => 'gma', 'Glyma.10G033500' => 'gma', 'Glyma.10G185200' => 'gma', 'Glyma.17G004300' => 'gma', 'Glyma.19G161900' => 'gma', 'Glyma.20G205100' => 'gma', 'Glyma.20G205200' => 'gma', 'Gohir.A01G139101' => 'ghi', 'Gohir.A02G035600' => 'ghi', 'Gohir.A02G117901' => 'ghi', 'Gohir.A07G210100' => 'ghi', 'Gohir.A07G210200' => 'ghi', 'Gohir.A08G061100' => 'ghi', 'Gohir.A09G223000' => 'ghi', 'Gohir.A09G223100' => 'ghi', 'Gohir.A10G113900' => 'ghi', 'Gohir.A10G114000' => 'ghi', 'Gohir.D02G042300' => 'ghi', 'Gohir.D07G216100' => 'ghi', 'Gohir.D07G216200' => 'ghi', 'Gohir.D08G070400' => 'ghi', 'Gohir.D09G225000' => 'ghi', 'Gohir.D09G225100' => 'ghi', 'Gohir.D10G152300' => 'ghi', 'Gohir.D10G153200' => 'ghi', 'Gohir.D11G133701' => 'ghi', 'Gorai.004G074100' => 'gra', 'Gorai.005G046800' => 'gra', 'Gorai.006G246500' => 'gra', 'Gorai.006G246600' => 'gra', 'Gorai.007G142900' => 'gra', 'Gorai.011G171000' => 'gra', 'Gorai.011G171100' => 'gra', 'Gorai.013G104300' => 'gra', 'Gorai.013G104400' => 'gra', 'GSVIVG01000754001' => 'vvi', 'GSVIVG01000756001' => 'vvi', 'GSVIVG01010903001' => 'vvi', 'GSVIVG01017623001' => 'vvi', 'GSVIVG01018113001' => 'vvi', 'GSVIVG01018116001' => 'vvi', 'GSVIVG01018118001' => 'vvi', 'HanXRQChr03g0076211' => 'han', 'HanXRQChr03g0092431' => 'han', 'HanXRQChr03g0092441' => 'han', 'HanXRQChr03g0092591' => 'han', 'HanXRQChr03g0092671' => 'han', 'HanXRQChr03g0092681' => 'han', 'HanXRQChr03g0092691' => 'han', 'HanXRQChr03g0092701' => 'han', 'HanXRQChr03g0092721' => 'han', 'HanXRQChr03g0092731' => 'han', 'HanXRQChr04g0113681' => 'han', 'HanXRQChr10g0281371' => 'han', 'HanXRQChr11g0337141' => 'han', 'HanXRQChr13g0424521' => 'han', 'HanXRQChr13g0424531' => 'han', 'HanXRQChr13g0424541' => 'han', 'HanXRQChr16g0498221' => 'han', 'Haze_04377' => 'cav', 'Haze_11298' => 'cav', 'Haze_24547' => 'cav', 'Haze_24550' => 'cav', 'Haze_26587' => 'cav', 'Hma1.2p1_0650F.1_g195410' => 'hma', 'Hma1.2p1_0893F.1_g233470' => 'hma', 'HPP92_006508' => 'vpl', 'HPP92_024780' => 'vpl', 'Hund02688' => 'sun', 'Hund09380' => 'sun', 'Hund09381' => 'sun', 'Hund09832' => 'sun', 'Hund09833' => 'sun', 'Hund11351' => 'sun', 'Hund11513' => 'sun', 'Lalb_Chr06g0162591' => 'lal', 'Lalb_Chr06g0162601' => 'lal', 'Lalb_Chr06g0169321' => 'lal', 'Lalb_Chr09g0330951' => 'lal', 'Lalb_Chr16g0387631' => 'lal', 'Lalb_Chr21g0306241' => 'lal', 'Lalb_Chr25g0290051' => 'lal', 'Lalb_Chr25g0290061' => 'lal', 'Lalb_Chr25g0290071' => 'lal', 'Lj1g0003876' => 'lja', 'Lj1P1207T36' => 'lonja', 'Lj2C1156G12' => 'lonja', 'Lj3A793G39' => 'lonja', 'Lj3C580G2' => 'lonja', 'Lj3C780G2' => 'lonja', 'Lj3C780T4' => 'lonja', 'Lj3C793G9' => 'lonja', 'Lj4g0012960' => 'lja', 'Lj5g0021252' => 'lja', 'Lj5g0021484' => 'lja', 'Lj5g0024528' => 'lja', 'Lj6A399T12' => 'lonja', 'Lj6A656G65' => 'lonja', 'Lsat_1_v5_gn_3_125500' => 'lsa', 'Lsat_1_v5_gn_3_125540' => 'lsa', 'Lsat_1_v5_gn_5_72701' => 'lsa', 'Lsat_1_v5_gn_8_91560' => 'lsa', 'Lsat_1_v5_gn_9_9640' => 'lsa', 'Manes.01G200600' => 'mes', 'Manes.01G200700' => 'mes', 'Manes.03G168900' => 'mes', 'Manes.03G169000' => 'mes', 'Manes.05G085801' => 'mes', 'Manes.05G086200' => 'mes', 'Manes.15G036700' => 'mes', 'Manes.15G036900' => 'mes', 'Mapoly0004s0172' => 'mpo', 'Mapoly0023s0001' => 'mpo', 'Mapoly0142s0012' => 'mpo', 'MBI01_g32854_MAGBIO' => 'mbi', 'MBI11_g24427_MAGBIO' => 'mbi', 'MBI11_g47319_MAGBIO' => 'mbi', 'MCO01G433' => 'mco', 'MD00G1187800' => 'mdo', 'MD04G1226500' => 'mdo', 'MD05G1203900' => 'mdo', 'MD10G1191100' => 'mdo', 'MD12G1243500' => 'mdo', 'MD13G1207000' => 'mdo', 'MD13G1207100' => 'mdo', 'MD16G1208600' => 'mdo', 'Medtr1g050352' => 'mtr', 'Medtr1g070385' => 'mtr', 'Medtr1g070450' => 'mtr', 'Medtr1g075200' => 'mtr', 'Medtr1g075250' => 'mtr', 'Medtr1g075260' => 'mtr', 'Medtr1g475250' => 'mtr', 'Medtr4g075450' => 'mtr', 'Medtr7g096300' => 'mtr', 'Medtr8g105110' => 'mtr', 'MELO3C006470.2' => 'cme', 'MELO3C006471.2' => 'cme', 'MELO3C020772.2' => 'cme', 'MELO3C026780.2' => 'cme', 'MELO3C026781.2' => 'cme', 'Migut.D00390' => 'egut', 'Migut.G00435' => 'egut', 'Migut.G00436' => 'egut', 'Migut.G00718' => 'egut', 'MSTRG.21891' => 'ama', 'MSTRG.26910' => 'ama', 'MSTRG.4099' => 'ama', 'MSTRG.9925' => 'ama', 'Nitab4.5_0000165g0010' => 'nta', 'Nitab4.5_0000209g0180' => 'nta', 'Nitab4.5_0000244g0440' => 'nta', 'Nitab4.5_0000525g0220' => 'nta', 'Nitab4.5_0001597g0020' => 'nta', 'Nitab4.5_0001878g0040' => 'nta', 'Nitab4.5_0001878g0060' => 'nta', 'Nitab4.5_0002838g0100' => 'nta', 'Nitab4.5_0002838g0120' => 'nta', 'Nitab4.5_0004798g0030' => 'nta', 'Nitab4.5_0005420g0010' => 'nta', 'Nitab4.5_0005507g0010' => 'nta', 'Nitab4.5_0005574g0020' => 'nta', 'Nitab4.5_0005838g0010' => 'nta', 'Nitab4.5_0010580g0020' => 'nta', 'Nn1g02599' => 'nnu', 'Nn1g02608' => 'nnu', 'Nn3g17742' => 'nnu', 'Nn3g19534' => 'nnu', 'Nn3g19535' => 'nnu', 'Oeu008790.1' => 'oeu', 'Oeu008792.1' => 'oeu', 'Oeu032590.1' => 'oeu', 'Oeu035349.1' => 'oeu', 'Oeu049791.1' => 'oeu', 'Os01g0774500' => 'osa', 'Os03g0628800' => 'osa', 'Os03g0798600' => 'osa', 'Os05g0508800' => 'osa', 'Peaxi162Scf00036g02018' => 'pax', 'Peaxi162Scf00578g00032' => 'pax', 'Peaxi162Scf00578g00317' => 'pax', 'Peaxi162Scf00785g00114' => 'pax', 'Peaxi162Scf00813g00119' => 'pax', 'Peaxi162Scf00906g00227' => 'pax', 'PGR004G0875' => 'pgr', 'PGR004G2424' => 'pgr', 'PGR031G1239' => 'pgr', 'PGR031G2474' => 'pgr', 'PGR044G0423' => 'pgr', 'PGSC0003DMG400001128' => 'stu', 'PGSC0003DMG400007336' => 'stu', 'PGSC0003DMG400016318' => 'stu', 'PGSC0003DMG400016319' => 'stu', 'PGSC0003DMG400018074' => 'stu', 'Phvul.001G157700' => 'pvu', 'Phvul.002G148550' => 'pvu', 'Phvul.002G320200' => 'pvu', 'Phvul.003G089200' => 'pvu', 'Phvul.007G126000' => 'pvu', 'Phvul.007G126100' => 'pvu', 'Phvul.007G178000' => 'pvu', 'Phvul.007G178200' => 'pvu', 'Potri.002G043000' => 'ptr', 'Potri.002G043200' => 'ptr', 'Potri.003G123750' => 'ptr', 'Potri.005G055401' => 'ptr', 'Potri.005G219700' => 'ptr', 'Potri.005G220000' => 'ptr', 'Potri.008G161901' => 'ptr', 'Potri.008G162000' => 'ptr', 'Potri.008G162400' => 'ptr', 'Potri.010G076900' => 'ptr', 'Pp3c12_9180' => 'ppa', 'Pp3c13_19770' => 'ppa', 'Pp3c14_22950' => 'ppa', 'Pp3c16_12160' => 'ppa', 'Pp3c27_7820' => 'ppa', 'Pp3c2_3490' => 'ppa', 'Pp3c3_23700' => 'ppa', 'Pp3c3_36520' => 'ppa', 'Pp3c4_15250' => 'ppa', 'PRCOL_00007002' => 'pco', 'Prupe.1G030600' => 'ppe', 'Prupe.1G030700' => 'ppe', 'Prupe.6G345200' => 'ppe', 'Prupe.8G230300' => 'ppe', 'Prupe.8G230500' => 'ppe', 'Psat3g059600' => 'psa', 'Psat5g200920' => 'psa', 'Psat6g056440' => 'psa', 'Psat6g057360' => 'psa', 'Psat6g134120' => 'psa', 'Psat6g134160' => 'psa', 'Psat7g008640' => 'psa', 'Psat7g185240' => 'psa', 'PSO017G1330' => 'pso', 'PSO063G6097' => 'pso', 'PSO170G0835' => 'pso', 'PSO170G2499' => 'pso', 'PSO210G5058' => 'pso', 'PSO210G6154' => 'pso', 'PSO585G0031' => 'pso', 'PSO832G0264' => 'pso', 'PSO832G4288' => 'pso', 'QL03p027355' => 'qlo', 'QL03p027430' => 'qlo', 'QL04p081380' => 'qlo', 'QL06p015642' => 'qlo', 'QL06p015650' => 'qlo', 'QL06p015686' => 'qlo', 'QL12p042927' => 'qlo', 'QL93p1863_0035' => 'qlo', 'RcHm_v2.0_Chr3g0450581' => 'rch', 'RcHm_v2.0_Chr4g0390371' => 'rch', 'RcHm_v2.0_Chr4g0390381' => 'rch', 'RcHm_v2.0_Chr4g0390491' => 'rch', 'RcHm_v2.0_Chr4g0390501' => 'rch', 'RcHm_v2.0_Chr6g0289231' => 'rch', 'Rhsim04G0190400' => 'rsi', 'Rhsim04G0190500' => 'rsi', 'Rhsim04G0190600' => 'rsi', 'Rhsim13G0031400' => 'rsi', 'Rhsim13G0165600' => 'rsi', 'RhsimUnG0114600' => 'rsi', 'RhsimUnG0114700' => 'rsi', 'Sabra02G0034800' => 'sbr', 'Sabra02G0035100' => 'sbr', 'Sabra05G0168600' => 'sbr', 'Sabra05G0168800' => 'sbr', 'Sabra08G0123700' => 'sbr', 'Sabra10G0031900' => 'sbr', 'Sabra13G0039000' => 'sbr', 'SalBow2G0782' => 'sbo', 'SalBow2G1403' => 'sbo', 'SalBow4G0074' => 'sbo', 'SalBow4G2635' => 'sbo', 'SalBow5G3010' => 'sbo', 'Sc05g0000870' => 'sci', 'Sc05g0000890' => 'sci', 'Sc13g0005000' => 'sci', 'Sc13g0005030' => 'sci', 'Sc19g0003790' => 'sci', 'Sc19g0003800' => 'sci', 'Sed0003467' => 'sed', 'Sed0009355' => 'sed', 'Sed0009894' => 'sed', 'Sed0011972' => 'sed', 'Sed0021483' => 'sed', 'Sed0021750' => 'sed', 'Sed0026279' => 'sed', 'SEGI_05312' => 'sgi', 'SEGI_10112' => 'sgi', 'SEGI_15835' => 'sgi', 'SEGI_30386' => 'sgi', 'SEGI_34122' => 'sgi', 'SEGI_35063' => 'sgi', 'SGA_v2.0_scaffold101G29794' => 'sas', 'SGA_v2.0_scaffold1G00573' => 'sas', 'SGA_v2.0_scaffold79G25637' => 'sas', 'SGA_v2.0_scaffold88G27283' => 'sas', 'SGA_v2.0_scaffold88G27285' => 'sas', 'SGA_v2.0_scaffold88G27331' => 'sas', 'SHI09937' => 'shi', 'SMO119G0302' => 'smo', 'SMO137G0231' => 'smo', 'SMO367G1151' => 'smo', 'Solyc02g082000.3' => 'sly', 'Solyc06g031670.3' => 'sly', 'Solyc06g053810.3' => 'sly', 'Solyc07g025457.1' => 'sly', 'Solyc08g059740.1' => 'sly', 'Solyc08g059750.3' => 'sly', 'Solyc09g083370.3' => 'sly', 'Solyc12g038950.3' => 'sly', 'Sopen02g026630' => 'spe', 'Sopen06g018930' => 'spe', 'Sopen06g018940' => 'spe', 'Sopen08g009460' => 'spe', 'Sopen09g032290' => 'spe', 'Sp1g03080' => 'spa', 'Sp1g03090' => 'spa', 'Sp1g05480' => 'spa', 'Sp2g07860' => 'spa', 'Sp2g08430' => 'spa', 'Sp2g08440' => 'spa', 'Sp2g26200' => 'spa', 'Sp4g13170' => 'spa', 'Sp6g33840' => 'spa', 'SpUn1204_0010' => 'spa', 'TAR365G0908' => 'tar', 'TAR381G1270' => 'tar', 'TAR381G1651' => 'tar', 'TAR625G1131' => 'tar', 'TAR633G0962' => 'tar', 'TAR633G1729' => 'tar', 'TAR633G1864' => 'tar', 'TAR636G0221' => 'tar', 'TAR636G0314' => 'tar', 'TAR636G3202' => 'tar', 'THA.LOC104800805' => 'tha', 'THA.LOC104801096' => 'tha', 'THA.LOC104801555' => 'tha', 'THA.LOC104808491' => 'tha', 'THA.LOC104808595' => 'tha', 'THA.LOC104815985' => 'tha', 'THA.LOC104822250' => 'tha', 'THA.LOC104826071' => 'tha', 'Thecc.01G265200' => 'tca', 'Thecc.01G265300' => 'tca', 'Thecc.01G265700' => 'tca', 'Thecc.03G109100' => 'tca', 'Thecc.04G245900' => 'tca', 'Thecc.04G246000' => 'tca', 'Thhalv10003334m.g' => 'esa', 'Thhalv10005508m.g' => 'esa', 'Thhalv10005643m.g' => 'esa', 'Thhalv10007316m.g' => 'esa', 'Thhalv10009006m.g' => 'esa', 'Thhalv10009309m.g' => 'esa', 'Thhalv10014917m.g' => 'esa', 'Thhalv10014919m.g' => 'esa', 'Thhalv10015393m.g' => 'esa', 'Thhalv10016515m.g' => 'esa', 'Thhalv10029242m.g' => 'esa', 'TPR.G16654' => 'tpr', 'TPR.G20589' => 'tpr', 'TPR.G23029' => 'tpr', 'TPR.G27731' => 'tpr', 'TPR.G28889' => 'tpr', 'TPR.G28899' => 'tpr', 'TPR.G30846' => 'tpr', 'TPR.G5452' => 'tpr', 'TPR.G5713' => 'tpr', 'TPR.G9046' => 'tpr', 'TPR.G9061' => 'tpr', 'TWI09G1075' => 'twi', 'TWI12G0806' => 'twi', 'TWI18G0108' => 'twi', 'TWI53G1361' => 'twi', 'TWI73G0185' => 'twi', 'TWI73G0427' => 'twi', 'unitig_37.g12001' => 'ugi', 'unitig_747.g21660' => 'ugi', 'unitig_748.g7232' => 'ugi', 'unitig_748.g7315' => 'ugi', 'unitig_85.g27262' => 'ugi', 'unitig_92.g28220' => 'ugi', 'vmacro02632' => 'vma', 'vmacro08410' => 'vma', 'vmacro08411' => 'vma', 'vmacro15407' => 'vma', 'VMungo0251G3619' => 'vmu', 'VMungo0720G1204' => 'vmu', 'VMungo0720G1918' => 'vmu', 'VMungo0720G2387' => 'vmu', 'VMungo0720G2961' => 'vmu', 'VMungo1215G2154' => 'vmu', 'VMungo1383G2411' => 'vmu', 'Zm00001eb051130' => 'zma', 'Zm00001eb116830' => 'zma', 'Zm00001eb116850' => 'zma', 'Zm00001eb151740' => 'zma', 'Zm00001eb292360' => 'zma', 'Zm00001eb301640' => 'zma' ), 'gf_id' => 'HOM05D000856', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000856' ), 'data_identifier' => 'HOM05D000856', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000856', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p00010' => 'bna', 'A03p04160' => 'bna', 'A03p17160' => 'bna', 'A04p23370' => 'bna', 'A05p14860' => 'bna', 'A08p37020' => 'bna', 'A09p08050' => 'bna', 'A09p66800' => 'bna', 'A09p67940' => 'bna', 'A10p02680' => 'bna', 'A10p05320' => 'bna', 'Aa31LG1G20560' => 'aar', 'Aa31LG1G20610' => 'aar', 'Aa31LG1G7810' => 'aar', 'Aa31LG5G3590' => 'aar', 'Aa31LG5G6140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3819' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4683' => 'aag', 'Actinidia04480' => 'ach', 'Actinidia05466' => 'ach', 'Actinidia08445' => 'ach', 'Actinidia21170' => 'ach', 'Actinidia24812' => 'ach', 'Actinidia24951' => 'ach', 'Actinidia40088' => 'ach', 'Ah.02g111660' => 'amhyb', 'Ah.11g048900' => 'amhyb', 'Ah.11g049910' => 'amhyb', 'AL1G13870' => 'aly', 'AL1G13880' => 'aly', 'AL1G16760' => 'aly', 'AL390U10020' => 'aly', 'AL4G25520' => 'aly', 'AL6G19890' => 'aly', 'AL6G19900' => 'aly', 'AL6G19910' => 'aly', 'AL8G40100' => 'aly', 'Aqoxy2G03562' => 'aox', 'Aqoxy5G00316' => 'aox', 'Aqoxy5G00926' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1628KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1H403S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2FU6SJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.882I6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8YRY2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YN1SN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AF70II' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZA8L1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F916KL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHRD8H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KTZ8QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S22EMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8M29T' => 'arhy', 'AT1G04270' => 'ath', 'AT1G04280' => 'ath', 'AT1G06750' => 'ath', 'AT1G33850' => 'ath', 'AT2G30630' => 'ath', 'AT5G09490' => 'ath', 'AT5G09500' => 'ath', 'AT5G09510' => 'ath', 'AT5G43640' => 'ath', 'AT5G63070' => 'ath', 'ATR0605G315' => 'atr', 'Atru.chr11.175' => 'acertr', 'Atru.chr11.653' => 'acertr', 'Atru.chr3.1616' => 'acertr', 'Atru.chr4.2230' => 'acertr', 'Atru.chr4.2232' => 'acertr', 'Atru.chr5.1598' => 'acertr', 'Atru.chr5.1600' => 'acertr', 'Atru.chr5.2188' => 'acertr', 'AUR62008326' => 'cqu', 'AUR62011922' => 'cqu', 'AUR62011924' => 'cqu', 'AUR62021771' => 'cqu', 'AUR62032237' => 'cqu', 'AUR62032240' => 'cqu', 'BcaB01g05572' => 'bca', 'BcaB02g10337' => 'bca', 'BcaB04g19944' => 'bca', 'BcaB05g21548' => 'bca', 'BcaB05g21549' => 'bca', 'BcaB05g23227' => 'bca', 'BcaB06g26256' => 'bca', 'BcaB06g26257' => 'bca', 'BcaB06g28379' => 'bca', 'BcaC02g11159' => 'bca', 'BcaC03g13258' => 'bca', 'BcaC03g13259' => 'bca', 'BcaC05g24456' => 'bca', 'BcaC05g24457' => 'bca', 'BcaC07g36922' => 'bca', 'BcaC07g36923' => 'bca', 'BcaC07g42050' => 'bca', 'BcaC07g42176' => 'bca', 'BcaC07g42195' => 'bca', 'BcaC07g42196' => 'bca', 'BcaNung06674' => 'bca', 'BolC2t06351H' => 'bol', 'BolC2t06352H' => 'bol', 'BolC3t12993H' => 'bol', 'BolC4t23525H' => 'bol', 'BolC4t27475H' => 'bol', 'BolC5t29025H' => 'bol', 'BolC5t29026H' => 'bol', 'BolC8t46898H' => 'bol', 'BolC8t46899H' => 'bol', 'BolC8t52630H' => 'bol', 'BolC8t52765H' => 'bol', 'BolC9t53824H' => 'bol', 'BraA03t09760Z' => 'bra', 'BraA03t10990Z' => 'bra', 'BraA05t20413Z' => 'bra', 'BraA08t35602Z' => 'bra', 'BraA09t36458Z' => 'bra', 'BraA09t42018Z' => 'bra', 'BraA09t42129Z' => 'bra', 'BraA10t42536Z' => 'bra', 'BraA10t42537Z' => 'bra', 'C01p10690' => 'bna', 'C02p03890' => 'bna', 'C02p03900' => 'bna', 'C03p04620' => 'bna', 'C04p19870' => 'bna', 'C04p59670' => 'bna', 'C05p02460' => 'bna', 'C05p02470' => 'bna', 'C08p00980' => 'bna', 'C08p00990' => 'bna', 'C08p51030' => 'bna', 'C08p52360' => 'bna', 'C09p09120' => 'bna', 'CAN.G19.15' => 'can', 'CAN.G251.10' => 'can', 'CAN.G251.9' => 'can', 'CAN.G398.24' => 'can', 'CAN.G410.32' => 'can', 'CAN.G881.2' => 'can', 'CANSAT01G3025' => 'cansat', 'CANSAT78G1211' => 'cansat', 'CANSAT78G1218' => 'cansat', 'CANSAT78G1521' => 'cansat', 'CANSAT78G1670' => 'cansat', 'CARHR003600' => 'chi', 'CARHR003610' => 'chi', 'CARHR006290' => 'chi', 'CARHR006430' => 'chi', 'CARHR124110' => 'chi', 'CARHR203870' => 'chi', 'CARHR203880' => 'chi', 'CARHR203890' => 'chi', 'CARHR276880' => 'chi', 'Carub.0001s0346' => 'cru', 'Carub.0001s0347' => 'cru', 'Carub.0001s0607' => 'cru', 'Carub.0003s2768' => 'cru', 'Carub.0003s2769' => 'cru', 'Carub.0004s1178' => 'cru', 'Carub.0006s0806' => 'cru', 'Carub.0006s0807' => 'cru', 'Carub.0006s0808' => 'cru', 'Carub.0008s0501' => 'cru', 'Carub.0008s2379' => 'cru', 'Ca_08655_v3' => 'car', 'Ca_08922_v3' => 'car', 'Ca_08923_v3' => 'car', 'Ca_09119_v3' => 'car', 'Ca_09703_v3' => 'car', 'Ca_09705_v3' => 'car', 'Ca_09835_v3' => 'car', 'Ca_26403_v3' => 'car', 'Ca_30719_v3' => 'car', 'CBR_g17958' => 'cbr', 'CBR_g40516' => 'cbr', 'Cc00_g05350' => 'ccan', 'Cc01_g18690' => 'ccan', 'Cc03_g04830' => 'ccan', 'Cc03_g04850' => 'ccan', 'CDE02G4469' => 'cde', 'CDE06G0883' => 'cde', 'CDE06G1295' => 'cde', 'CDE06G1390' => 'cde', 'CDE07G0584' => 'cde', 'CDE07G1084' => 'cde', 'CDE08G1259' => 'cde', 'Cfa002341' => 'cfa', 'Cfa024337' => 'cfa', 'Ciclev10004749m.g' => 'ccl', 'Ciclev10006127m.g' => 'ccl', 'Ciclev10019720m.g' => 'ccl', 'Ciclev10022652m.g' => 'ccl', 'CiPaw.01G190400' => 'cil', 'CiPaw.01G190500' => 'cil', 'CiPaw.02G116400' => 'cil', 'CiPaw.02G116500' => 'cil', 'CiPaw.04G183000' => 'cil', 'CiPaw.04G183300' => 'cil', 'ClCG05G004610' => 'cla', 'ClCG05G004620' => 'cla', 'ClCG06G006730' => 'cla', 'ClCG06G006740' => 'cla', 'ClCG11G003690' => 'cla', 'COL.COLO4_08276' => 'col', 'COL.COLO4_08277' => 'col', 'COL.COLO4_15787' => 'col', 'COL.COLO4_15789' => 'col', 'Cpa.g.c44815' => 'cpa', 'Cpa.g.sc52.144' => 'cpa', 'Cpa.g.sc58.46' => 'cpa', 'Cpa.g.sc58.47' => 'cpa', 'Cre08.g360900' => 'cre', 'CsaV3_2G013030' => 'csa', 'CsaV3_2G013050' => 'csa', 'CsaV3_2G015620' => 'csa', 'CsaV3_3G012590' => 'csa', 'CsaV3_3G012600' => 'csa', 'CSS0001641' => 'camsi', 'CSS0008310' => 'camsi', 'CSS0013011' => 'camsi', 'CSS0017147' => 'camsi', 'CSS0022970' => 'camsi', 'CSS0025655' => 'camsi', 'CSS0028665' => 'camsi', 'CSS0029117' => 'camsi', 'CSS0032024' => 'camsi', 'CSS0039681' => 'camsi', 'CSS0046516' => 'camsi', 'CSS0050307' => 'camsi', 'DCAR_005871' => 'dca', 'DCAR_007342' => 'dca', 'DCAR_024228' => 'dca', 'DCAR_027277' => 'dca', 'DCAR_030718' => 'dca', 'Dinv20287' => 'din', 'Dinv22461' => 'din', 'Dinv22464' => 'din', 'Dinv29912' => 'din', 'Dinv29913' => 'din', 'Dinv34580' => 'din', 'Dinv34582' => 'din', 'Dinv44632' => 'din', 'Duzib052G0266' => 'dzi', 'Duzib133G0907' => 'dzi', 'Duzib133G1034' => 'dzi', 'Duzib138G0207' => 'dzi', 'Duzib138G0491' => 'dzi', 'Duzib151G0812' => 'dzi', 'Duzib151G1166' => 'dzi', 'Duzib168G0192' => 'dzi', 'Duzib211G0077' => 'dzi', 'Duzib212G0429' => 'dzi', 'Duzib212G0472' => 'dzi', 'ECA233G2617' => 'eca', 'ECA236G4188' => 'eca', 'ECA240G0936' => 'eca', 'ECA240G1129' => 'eca', 'ECA247G0623' => 'eca', 'EL10Ac5g10451' => 'bvu', 'EL10Ac5g10453' => 'bvu', 'EL10Ac5g10894' => 'bvu', 'Eucgr.H00192' => 'egr', 'Eucgr.H00193' => 'egr', 'Eucgr.H00194' => 'egr', 'Eucgr.J01562' => 'egr', 'Eucgr.K03301' => 'egr', 'FAN02G0632' => 'fan', 'FAN05G5378' => 'fan', 'FAN09G3247' => 'fan', 'FAN12G0435' => 'fan', 'FAN12G2426' => 'fan', 'FAN14G1707' => 'fan', 'FAN14G4725' => 'fan', 'FAN15G2071' => 'fan', 'FAN17G3065' => 'fan', 'FAN19G1376' => 'fan', 'FAN20G0354' => 'fan', 'FAN20G2429' => 'fan', 'FAN20G2658' => 'fan', 'FAN24G2343' => 'fan', 'FAN27G2362' => 'fan', 'FAN28G1765' => 'fan', 'FvH4_1g16020' => 'fve', 'FvH4_2g04890' => 'fve', 'FvH4_2g22270' => 'fve', 'FvH4_4g02630' => 'fve', 'FvH4_4g02640' => 'fve', 'FvH4_6g02650' => 'fve', 'Glyma.02G140600' => 'gma', 'Glyma.03G159900' => 'gma', 'Glyma.05G234800' => 'gma', 'Glyma.07G269600' => 'gma', 'Glyma.08G042300' => 'gma', 'Glyma.10G033500' => 'gma', 'Glyma.10G185200' => 'gma', 'Glyma.17G004300' => 'gma', 'Glyma.19G161900' => 'gma', 'Glyma.20G205100' => 'gma', 'Glyma.20G205200' => 'gma', 'Gohir.A01G139101' => 'ghi', 'Gohir.A02G035600' => 'ghi', 'Gohir.A02G117901' => 'ghi', 'Gohir.A07G210100' => 'ghi', 'Gohir.A07G210200' => 'ghi', 'Gohir.A08G061100' => 'ghi', 'Gohir.A09G223000' => 'ghi', 'Gohir.A09G223100' => 'ghi', 'Gohir.A10G113900' => 'ghi', 'Gohir.A10G114000' => 'ghi', 'Gohir.D02G042300' => 'ghi', 'Gohir.D07G216100' => 'ghi', 'Gohir.D07G216200' => 'ghi', 'Gohir.D08G070400' => 'ghi', 'Gohir.D09G225000' => 'ghi', 'Gohir.D09G225100' => 'ghi', 'Gohir.D10G152300' => 'ghi', 'Gohir.D10G153200' => 'ghi', 'Gohir.D11G133701' => 'ghi', 'Gorai.004G074100' => 'gra', 'Gorai.005G046800' => 'gra', 'Gorai.006G246500' => 'gra', 'Gorai.006G246600' => 'gra', 'Gorai.007G142900' => 'gra', 'Gorai.011G171000' => 'gra', 'Gorai.011G171100' => 'gra', 'Gorai.013G104300' => 'gra', 'Gorai.013G104400' => 'gra', 'GSVIVG01000754001' => 'vvi', 'GSVIVG01000756001' => 'vvi', 'GSVIVG01010903001' => 'vvi', 'GSVIVG01017623001' => 'vvi', 'GSVIVG01018113001' => 'vvi', 'GSVIVG01018116001' => 'vvi', 'GSVIVG01018118001' => 'vvi', 'HanXRQChr03g0076211' => 'han', 'HanXRQChr03g0092431' => 'han', 'HanXRQChr03g0092441' => 'han', 'HanXRQChr03g0092591' => 'han', 'HanXRQChr03g0092671' => 'han', 'HanXRQChr03g0092681' => 'han', 'HanXRQChr03g0092691' => 'han', 'HanXRQChr03g0092701' => 'han', 'HanXRQChr03g0092721' => 'han', 'HanXRQChr03g0092731' => 'han', 'HanXRQChr04g0113681' => 'han', 'HanXRQChr10g0281371' => 'han', 'HanXRQChr11g0337141' => 'han', 'HanXRQChr13g0424521' => 'han', 'HanXRQChr13g0424531' => 'han', 'HanXRQChr13g0424541' => 'han', 'HanXRQChr16g0498221' => 'han', 'Haze_04377' => 'cav', 'Haze_11298' => 'cav', 'Haze_24547' => 'cav', 'Haze_24550' => 'cav', 'Haze_26587' => 'cav', 'Hma1.2p1_0650F.1_g195410' => 'hma', 'Hma1.2p1_0893F.1_g233470' => 'hma', 'HPP92_006508' => 'vpl', 'HPP92_024780' => 'vpl', 'Hund02688' => 'sun', 'Hund09380' => 'sun', 'Hund09381' => 'sun', 'Hund09832' => 'sun', 'Hund09833' => 'sun', 'Hund11351' => 'sun', 'Hund11513' => 'sun', 'Lalb_Chr06g0162591' => 'lal', 'Lalb_Chr06g0162601' => 'lal', 'Lalb_Chr06g0169321' => 'lal', 'Lalb_Chr09g0330951' => 'lal', 'Lalb_Chr16g0387631' => 'lal', 'Lalb_Chr21g0306241' => 'lal', 'Lalb_Chr25g0290051' => 'lal', 'Lalb_Chr25g0290061' => 'lal', 'Lalb_Chr25g0290071' => 'lal', 'Lj1g0003876' => 'lja', 'Lj1P1207T36' => 'lonja', 'Lj2C1156G12' => 'lonja', 'Lj3A793G39' => 'lonja', 'Lj3C580G2' => 'lonja', 'Lj3C780G2' => 'lonja', 'Lj3C780T4' => 'lonja', 'Lj3C793G9' => 'lonja', 'Lj4g0012960' => 'lja', 'Lj5g0021252' => 'lja', 'Lj5g0021484' => 'lja', 'Lj5g0024528' => 'lja', 'Lj6A399T12' => 'lonja', 'Lj6A656G65' => 'lonja', 'Lsat_1_v5_gn_3_125500' => 'lsa', 'Lsat_1_v5_gn_3_125540' => 'lsa', 'Lsat_1_v5_gn_5_72701' => 'lsa', 'Lsat_1_v5_gn_8_91560' => 'lsa', 'Lsat_1_v5_gn_9_9640' => 'lsa', 'Manes.01G200600' => 'mes', 'Manes.01G200700' => 'mes', 'Manes.03G168900' => 'mes', 'Manes.03G169000' => 'mes', 'Manes.05G085801' => 'mes', 'Manes.05G086200' => 'mes', 'Manes.15G036700' => 'mes', 'Manes.15G036900' => 'mes', 'Mapoly0004s0172' => 'mpo', 'Mapoly0023s0001' => 'mpo', 'Mapoly0142s0012' => 'mpo', 'MBI01_g32854_MAGBIO' => 'mbi', 'MBI11_g24427_MAGBIO' => 'mbi', 'MBI11_g47319_MAGBIO' => 'mbi', 'MCO01G433' => 'mco', 'MD00G1187800' => 'mdo', 'MD04G1226500' => 'mdo', 'MD05G1203900' => 'mdo', 'MD10G1191100' => 'mdo', 'MD12G1243500' => 'mdo', 'MD13G1207000' => 'mdo', 'MD13G1207100' => 'mdo', 'MD16G1208600' => 'mdo', 'Medtr1g050352' => 'mtr', 'Medtr1g070385' => 'mtr', 'Medtr1g070450' => 'mtr', 'Medtr1g075200' => 'mtr', 'Medtr1g075250' => 'mtr', 'Medtr1g075260' => 'mtr', 'Medtr1g475250' => 'mtr', 'Medtr4g075450' => 'mtr', 'Medtr7g096300' => 'mtr', 'Medtr8g105110' => 'mtr', 'MELO3C006470.2' => 'cme', 'MELO3C006471.2' => 'cme', 'MELO3C020772.2' => 'cme', 'MELO3C026780.2' => 'cme', 'MELO3C026781.2' => 'cme', 'Migut.D00390' => 'egut', 'Migut.G00435' => 'egut', 'Migut.G00436' => 'egut', 'Migut.G00718' => 'egut', 'MSTRG.21891' => 'ama', 'MSTRG.26910' => 'ama', 'MSTRG.4099' => 'ama', 'MSTRG.9925' => 'ama', 'Nitab4.5_0000165g0010' => 'nta', 'Nitab4.5_0000209g0180' => 'nta', 'Nitab4.5_0000244g0440' => 'nta', 'Nitab4.5_0000525g0220' => 'nta', 'Nitab4.5_0001597g0020' => 'nta', 'Nitab4.5_0001878g0040' => 'nta', 'Nitab4.5_0001878g0060' => 'nta', 'Nitab4.5_0002838g0100' => 'nta', 'Nitab4.5_0002838g0120' => 'nta', 'Nitab4.5_0004798g0030' => 'nta', 'Nitab4.5_0005420g0010' => 'nta', 'Nitab4.5_0005507g0010' => 'nta', 'Nitab4.5_0005574g0020' => 'nta', 'Nitab4.5_0005838g0010' => 'nta', 'Nitab4.5_0010580g0020' => 'nta', 'Nn1g02599' => 'nnu', 'Nn1g02608' => 'nnu', 'Nn3g17742' => 'nnu', 'Nn3g19534' => 'nnu', 'Nn3g19535' => 'nnu', 'Oeu008790.1' => 'oeu', 'Oeu008792.1' => 'oeu', 'Oeu032590.1' => 'oeu', 'Oeu035349.1' => 'oeu', 'Oeu049791.1' => 'oeu', 'Os01g0774500' => 'osa', 'Os03g0628800' => 'osa', 'Os03g0798600' => 'osa', 'Os05g0508800' => 'osa', 'Peaxi162Scf00036g02018' => 'pax', 'Peaxi162Scf00578g00032' => 'pax', 'Peaxi162Scf00578g00317' => 'pax', 'Peaxi162Scf00785g00114' => 'pax', 'Peaxi162Scf00813g00119' => 'pax', 'Peaxi162Scf00906g00227' => 'pax', 'PGR004G0875' => 'pgr', 'PGR004G2424' => 'pgr', 'PGR031G1239' => 'pgr', 'PGR031G2474' => 'pgr', 'PGR044G0423' => 'pgr', 'PGSC0003DMG400001128' => 'stu', 'PGSC0003DMG400007336' => 'stu', 'PGSC0003DMG400016318' => 'stu', 'PGSC0003DMG400016319' => 'stu', 'PGSC0003DMG400018074' => 'stu', 'Phvul.001G157700' => 'pvu', 'Phvul.002G148550' => 'pvu', 'Phvul.002G320200' => 'pvu', 'Phvul.003G089200' => 'pvu', 'Phvul.007G126000' => 'pvu', 'Phvul.007G126100' => 'pvu', 'Phvul.007G178000' => 'pvu', 'Phvul.007G178200' => 'pvu', 'Potri.002G043000' => 'ptr', 'Potri.002G043200' => 'ptr', 'Potri.003G123750' => 'ptr', 'Potri.005G055401' => 'ptr', 'Potri.005G219700' => 'ptr', 'Potri.005G220000' => 'ptr', 'Potri.008G161901' => 'ptr', 'Potri.008G162000' => 'ptr', 'Potri.008G162400' => 'ptr', 'Potri.010G076900' => 'ptr', 'Pp3c12_9180' => 'ppa', 'Pp3c13_19770' => 'ppa', 'Pp3c14_22950' => 'ppa', 'Pp3c16_12160' => 'ppa', 'Pp3c27_7820' => 'ppa', 'Pp3c2_3490' => 'ppa', 'Pp3c3_23700' => 'ppa', 'Pp3c3_36520' => 'ppa', 'Pp3c4_15250' => 'ppa', 'PRCOL_00007002' => 'pco', 'Prupe.1G030600' => 'ppe', 'Prupe.1G030700' => 'ppe', 'Prupe.6G345200' => 'ppe', 'Prupe.8G230300' => 'ppe', 'Prupe.8G230500' => 'ppe', 'Psat3g059600' => 'psa', 'Psat5g200920' => 'psa', 'Psat6g056440' => 'psa', 'Psat6g057360' => 'psa', 'Psat6g134120' => 'psa', 'Psat6g134160' => 'psa', 'Psat7g008640' => 'psa', 'Psat7g185240' => 'psa', 'PSO017G1330' => 'pso', 'PSO063G6097' => 'pso', 'PSO170G0835' => 'pso', 'PSO170G2499' => 'pso', 'PSO210G5058' => 'pso', 'PSO210G6154' => 'pso', 'PSO585G0031' => 'pso', 'PSO832G0264' => 'pso', 'PSO832G4288' => 'pso', 'QL03p027355' => 'qlo', 'QL03p027430' => 'qlo', 'QL04p081380' => 'qlo', 'QL06p015642' => 'qlo', 'QL06p015650' => 'qlo', 'QL06p015686' => 'qlo', 'QL12p042927' => 'qlo', 'QL93p1863_0035' => 'qlo', 'RcHm_v2.0_Chr3g0450581' => 'rch', 'RcHm_v2.0_Chr4g0390371' => 'rch', 'RcHm_v2.0_Chr4g0390381' => 'rch', 'RcHm_v2.0_Chr4g0390491' => 'rch', 'RcHm_v2.0_Chr4g0390501' => 'rch', 'RcHm_v2.0_Chr6g0289231' => 'rch', 'Rhsim04G0190400' => 'rsi', 'Rhsim04G0190500' => 'rsi', 'Rhsim04G0190600' => 'rsi', 'Rhsim13G0031400' => 'rsi', 'Rhsim13G0165600' => 'rsi', 'RhsimUnG0114600' => 'rsi', 'RhsimUnG0114700' => 'rsi', 'Sabra02G0034800' => 'sbr', 'Sabra02G0035100' => 'sbr', 'Sabra05G0168600' => 'sbr', 'Sabra05G0168800' => 'sbr', 'Sabra08G0123700' => 'sbr', 'Sabra10G0031900' => 'sbr', 'Sabra13G0039000' => 'sbr', 'SalBow2G0782' => 'sbo', 'SalBow2G1403' => 'sbo', 'SalBow4G0074' => 'sbo', 'SalBow4G2635' => 'sbo', 'SalBow5G3010' => 'sbo', 'Sc05g0000870' => 'sci', 'Sc05g0000890' => 'sci', 'Sc13g0005000' => 'sci', 'Sc13g0005030' => 'sci', 'Sc19g0003790' => 'sci', 'Sc19g0003800' => 'sci', 'Sed0003467' => 'sed', 'Sed0009355' => 'sed', 'Sed0009894' => 'sed', 'Sed0011972' => 'sed', 'Sed0021483' => 'sed', 'Sed0021750' => 'sed', 'Sed0026279' => 'sed', 'SEGI_05312' => 'sgi', 'SEGI_10112' => 'sgi', 'SEGI_15835' => 'sgi', 'SEGI_30386' => 'sgi', 'SEGI_34122' => 'sgi', 'SEGI_35063' => 'sgi', 'SGA_v2.0_scaffold101G29794' => 'sas', 'SGA_v2.0_scaffold1G00573' => 'sas', 'SGA_v2.0_scaffold79G25637' => 'sas', 'SGA_v2.0_scaffold88G27283' => 'sas', 'SGA_v2.0_scaffold88G27285' => 'sas', 'SGA_v2.0_scaffold88G27331' => 'sas', 'SHI09937' => 'shi', 'SMO119G0302' => 'smo', 'SMO137G0231' => 'smo', 'SMO367G1151' => 'smo', 'Solyc02g082000.3' => 'sly', 'Solyc06g031670.3' => 'sly', 'Solyc06g053810.3' => 'sly', 'Solyc07g025457.1' => 'sly', 'Solyc08g059740.1' => 'sly', 'Solyc08g059750.3' => 'sly', 'Solyc09g083370.3' => 'sly', 'Solyc12g038950.3' => 'sly', 'Sopen02g026630' => 'spe', 'Sopen06g018930' => 'spe', 'Sopen06g018940' => 'spe', 'Sopen08g009460' => 'spe', 'Sopen09g032290' => 'spe', 'Sp1g03080' => 'spa', 'Sp1g03090' => 'spa', 'Sp1g05480' => 'spa', 'Sp2g07860' => 'spa', 'Sp2g08430' => 'spa', 'Sp2g08440' => 'spa', 'Sp2g26200' => 'spa', 'Sp4g13170' => 'spa', 'Sp6g33840' => 'spa', 'SpUn1204_0010' => 'spa', 'TAR365G0908' => 'tar', 'TAR381G1270' => 'tar', 'TAR381G1651' => 'tar', 'TAR625G1131' => 'tar', 'TAR633G0962' => 'tar', 'TAR633G1729' => 'tar', 'TAR633G1864' => 'tar', 'TAR636G0221' => 'tar', 'TAR636G0314' => 'tar', 'TAR636G3202' => 'tar', 'THA.LOC104800805' => 'tha', 'THA.LOC104801096' => 'tha', 'THA.LOC104801555' => 'tha', 'THA.LOC104808491' => 'tha', 'THA.LOC104808595' => 'tha', 'THA.LOC104815985' => 'tha', 'THA.LOC104822250' => 'tha', 'THA.LOC104826071' => 'tha', 'Thecc.01G265200' => 'tca', 'Thecc.01G265300' => 'tca', 'Thecc.01G265700' => 'tca', 'Thecc.03G109100' => 'tca', 'Thecc.04G245900' => 'tca', 'Thecc.04G246000' => 'tca', 'Thhalv10003334m.g' => 'esa', 'Thhalv10005508m.g' => 'esa', 'Thhalv10005643m.g' => 'esa', 'Thhalv10007316m.g' => 'esa', 'Thhalv10009006m.g' => 'esa', 'Thhalv10009309m.g' => 'esa', 'Thhalv10014917m.g' => 'esa', 'Thhalv10014919m.g' => 'esa', 'Thhalv10015393m.g' => 'esa', 'Thhalv10016515m.g' => 'esa', 'Thhalv10029242m.g' => 'esa', 'TPR.G16654' => 'tpr', 'TPR.G20589' => 'tpr', 'TPR.G23029' => 'tpr', 'TPR.G27731' => 'tpr', 'TPR.G28889' => 'tpr', 'TPR.G28899' => 'tpr', 'TPR.G30846' => 'tpr', 'TPR.G5452' => 'tpr', 'TPR.G5713' => 'tpr', 'TPR.G9046' => 'tpr', 'TPR.G9061' => 'tpr', 'TWI09G1075' => 'twi', 'TWI12G0806' => 'twi', 'TWI18G0108' => 'twi', 'TWI53G1361' => 'twi', 'TWI73G0185' => 'twi', 'TWI73G0427' => 'twi', 'unitig_37.g12001' => 'ugi', 'unitig_747.g21660' => 'ugi', 'unitig_748.g7232' => 'ugi', 'unitig_748.g7315' => 'ugi', 'unitig_85.g27262' => 'ugi', 'unitig_92.g28220' => 'ugi', 'vmacro02632' => 'vma', 'vmacro08410' => 'vma', 'vmacro08411' => 'vma', 'vmacro15407' => 'vma', 'VMungo0251G3619' => 'vmu', 'VMungo0720G1204' => 'vmu', 'VMungo0720G1918' => 'vmu', 'VMungo0720G2387' => 'vmu', 'VMungo0720G2961' => 'vmu', 'VMungo1215G2154' => 'vmu', 'VMungo1383G2411' => 'vmu', 'Zm00001eb051130' => 'zma', 'Zm00001eb116830' => 'zma', 'Zm00001eb116850' => 'zma', 'Zm00001eb151740' => 'zma', 'Zm00001eb292360' => 'zma', 'Zm00001eb301640' => 'zma' ) $gf_id = 'HOM05D000856' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000856' ) $data_identifier = 'HOM05D000856' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 13, 'ath' => (int) 10, 'atr' => (int) 1, 'acertr' => (int) 8, 'cqu' => (int) 6, 'bca' => (int) 21, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 11, 'car' => (int) 9, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 8, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 5, 'fan' => (int) 16, 'fve' => (int) 6, 'gma' => (int) 11, 'ghi' => (int) 19, 'gra' => (int) 9, 'vvi' => (int) 7, 'han' => (int) 17, 'cav' => (int) 5, 'hma' => (int) 2, 'vpl' => (int) 2, 'sun' => (int) 7, 'lal' => (int) 9, 'lja' => (int) 5, 'lonja' => (int) 9, 'lsa' => (int) 5, 'mes' => (int) 8, 'mpo' => (int) 3, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 10, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 15, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 9, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 9, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 6, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 5, 'spa' => (int) 10, 'tar' => (int) 10, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 11, 'tpr' => (int) 11, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 4, 'vmu' => (int) 7, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb301640' $species_info = array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ) $local_species = 'ppa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000856', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p00010' => 'bna', 'A03p04160' => 'bna', 'A03p17160' => 'bna', 'A04p23370' => 'bna', 'A05p14860' => 'bna', 'A08p37020' => 'bna', 'A09p08050' => 'bna', 'A09p66800' => 'bna', 'A09p67940' => 'bna', 'A10p02680' => 'bna', 'A10p05320' => 'bna', 'Aa31LG1G20560' => 'aar', 'Aa31LG1G20610' => 'aar', 'Aa31LG1G7810' => 'aar', 'Aa31LG5G3590' => 'aar', 'Aa31LG5G6140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3819' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4683' => 'aag', 'Actinidia04480' => 'ach', 'Actinidia05466' => 'ach', 'Actinidia08445' => 'ach', 'Actinidia21170' => 'ach', 'Actinidia24812' => 'ach', 'Actinidia24951' => 'ach', 'Actinidia40088' => 'ach', 'Ah.02g111660' => 'amhyb', 'Ah.11g048900' => 'amhyb', 'Ah.11g049910' => 'amhyb', 'AL1G13870' => 'aly', 'AL1G13880' => 'aly', 'AL1G16760' => 'aly', 'AL390U10020' => 'aly', 'AL4G25520' => 'aly', 'AL6G19890' => 'aly', 'AL6G19900' => 'aly', 'AL6G19910' => 'aly', 'AL8G40100' => 'aly', 'Aqoxy2G03562' => 'aox', 'Aqoxy5G00316' => 'aox', 'Aqoxy5G00926' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1628KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1H403S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2FU6SJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.882I6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8YRY2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YN1SN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AF70II' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZA8L1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F916KL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHRD8H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KTZ8QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S22EMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8M29T' => 'arhy', 'AT1G04270' => 'ath', 'AT1G04280' => 'ath', 'AT1G06750' => 'ath', 'AT1G33850' => 'ath', 'AT2G30630' => 'ath', 'AT5G09490' => 'ath', 'AT5G09500' => 'ath', 'AT5G09510' => 'ath', 'AT5G43640' => 'ath', 'AT5G63070' => 'ath', 'ATR0605G315' => 'atr', 'Atru.chr11.175' => 'acertr', 'Atru.chr11.653' => 'acertr', 'Atru.chr3.1616' => 'acertr', 'Atru.chr4.2230' => 'acertr', 'Atru.chr4.2232' => 'acertr', 'Atru.chr5.1598' => 'acertr', 'Atru.chr5.1600' => 'acertr', 'Atru.chr5.2188' => 'acertr', 'AUR62008326' => 'cqu', 'AUR62011922' => 'cqu', 'AUR62011924' => 'cqu', 'AUR62021771' => 'cqu', 'AUR62032237' => 'cqu', 'AUR62032240' => 'cqu', 'BcaB01g05572' => 'bca', 'BcaB02g10337' => 'bca', 'BcaB04g19944' => 'bca', 'BcaB05g21548' => 'bca', 'BcaB05g21549' => 'bca', 'BcaB05g23227' => 'bca', 'BcaB06g26256' => 'bca', 'BcaB06g26257' => 'bca', 'BcaB06g28379' => 'bca', 'BcaC02g11159' => 'bca', 'BcaC03g13258' => 'bca', 'BcaC03g13259' => 'bca', 'BcaC05g24456' => 'bca', 'BcaC05g24457' => 'bca', 'BcaC07g36922' => 'bca', 'BcaC07g36923' => 'bca', 'BcaC07g42050' => 'bca', 'BcaC07g42176' => 'bca', 'BcaC07g42195' => 'bca', 'BcaC07g42196' => 'bca', 'BcaNung06674' => 'bca', 'BolC2t06351H' => 'bol', 'BolC2t06352H' => 'bol', 'BolC3t12993H' => 'bol', 'BolC4t23525H' => 'bol', 'BolC4t27475H' => 'bol', 'BolC5t29025H' => 'bol', 'BolC5t29026H' => 'bol', 'BolC8t46898H' => 'bol', 'BolC8t46899H' => 'bol', 'BolC8t52630H' => 'bol', 'BolC8t52765H' => 'bol', 'BolC9t53824H' => 'bol', 'BraA03t09760Z' => 'bra', 'BraA03t10990Z' => 'bra', 'BraA05t20413Z' => 'bra', 'BraA08t35602Z' => 'bra', 'BraA09t36458Z' => 'bra', 'BraA09t42018Z' => 'bra', 'BraA09t42129Z' => 'bra', 'BraA10t42536Z' => 'bra', 'BraA10t42537Z' => 'bra', 'C01p10690' => 'bna', 'C02p03890' => 'bna', 'C02p03900' => 'bna', 'C03p04620' => 'bna', 'C04p19870' => 'bna', 'C04p59670' => 'bna', 'C05p02460' => 'bna', 'C05p02470' => 'bna', 'C08p00980' => 'bna', 'C08p00990' => 'bna', 'C08p51030' => 'bna', 'C08p52360' => 'bna', 'C09p09120' => 'bna', 'CAN.G19.15' => 'can', 'CAN.G251.10' => 'can', 'CAN.G251.9' => 'can', 'CAN.G398.24' => 'can', 'CAN.G410.32' => 'can', 'CAN.G881.2' => 'can', 'CANSAT01G3025' => 'cansat', 'CANSAT78G1211' => 'cansat', 'CANSAT78G1218' => 'cansat', 'CANSAT78G1521' => 'cansat', 'CANSAT78G1670' => 'cansat', 'CARHR003600' => 'chi', 'CARHR003610' => 'chi', 'CARHR006290' => 'chi', 'CARHR006430' => 'chi', 'CARHR124110' => 'chi', 'CARHR203870' => 'chi', 'CARHR203880' => 'chi', 'CARHR203890' => 'chi', 'CARHR276880' => 'chi', 'Carub.0001s0346' => 'cru', 'Carub.0001s0347' => 'cru', 'Carub.0001s0607' => 'cru', 'Carub.0003s2768' => 'cru', 'Carub.0003s2769' => 'cru', 'Carub.0004s1178' => 'cru', 'Carub.0006s0806' => 'cru', 'Carub.0006s0807' => 'cru', 'Carub.0006s0808' => 'cru', 'Carub.0008s0501' => 'cru', 'Carub.0008s2379' => 'cru', 'Ca_08655_v3' => 'car', 'Ca_08922_v3' => 'car', 'Ca_08923_v3' => 'car', 'Ca_09119_v3' => 'car', 'Ca_09703_v3' => 'car', 'Ca_09705_v3' => 'car', 'Ca_09835_v3' => 'car', 'Ca_26403_v3' => 'car', 'Ca_30719_v3' => 'car', 'CBR_g17958' => 'cbr', 'CBR_g40516' => 'cbr', 'Cc00_g05350' => 'ccan', 'Cc01_g18690' => 'ccan', 'Cc03_g04830' => 'ccan', 'Cc03_g04850' => 'ccan', 'CDE02G4469' => 'cde', 'CDE06G0883' => 'cde', 'CDE06G1295' => 'cde', 'CDE06G1390' => 'cde', 'CDE07G0584' => 'cde', 'CDE07G1084' => 'cde', 'CDE08G1259' => 'cde', 'Cfa002341' => 'cfa', 'Cfa024337' => 'cfa', 'Ciclev10004749m.g' => 'ccl', 'Ciclev10006127m.g' => 'ccl', 'Ciclev10019720m.g' => 'ccl', 'Ciclev10022652m.g' => 'ccl', 'CiPaw.01G190400' => 'cil', 'CiPaw.01G190500' => 'cil', 'CiPaw.02G116400' => 'cil', 'CiPaw.02G116500' => 'cil', 'CiPaw.04G183000' => 'cil', 'CiPaw.04G183300' => 'cil', 'ClCG05G004610' => 'cla', 'ClCG05G004620' => 'cla', 'ClCG06G006730' => 'cla', 'ClCG06G006740' => 'cla', 'ClCG11G003690' => 'cla', 'COL.COLO4_08276' => 'col', 'COL.COLO4_08277' => 'col', 'COL.COLO4_15787' => 'col', 'COL.COLO4_15789' => 'col', 'Cpa.g.c44815' => 'cpa', 'Cpa.g.sc52.144' => 'cpa', 'Cpa.g.sc58.46' => 'cpa', 'Cpa.g.sc58.47' => 'cpa', 'Cre08.g360900' => 'cre', 'CsaV3_2G013030' => 'csa', 'CsaV3_2G013050' => 'csa', 'CsaV3_2G015620' => 'csa', 'CsaV3_3G012590' => 'csa', 'CsaV3_3G012600' => 'csa', 'CSS0001641' => 'camsi', 'CSS0008310' => 'camsi', 'CSS0013011' => 'camsi', 'CSS0017147' => 'camsi', 'CSS0022970' => 'camsi', 'CSS0025655' => 'camsi', 'CSS0028665' => 'camsi', 'CSS0029117' => 'camsi', 'CSS0032024' => 'camsi', 'CSS0039681' => 'camsi', 'CSS0046516' => 'camsi', 'CSS0050307' => 'camsi', 'DCAR_005871' => 'dca', 'DCAR_007342' => 'dca', 'DCAR_024228' => 'dca', 'DCAR_027277' => 'dca', 'DCAR_030718' => 'dca', 'Dinv20287' => 'din', 'Dinv22461' => 'din', 'Dinv22464' => 'din', 'Dinv29912' => 'din', 'Dinv29913' => 'din', 'Dinv34580' => 'din', 'Dinv34582' => 'din', 'Dinv44632' => 'din', 'Duzib052G0266' => 'dzi', 'Duzib133G0907' => 'dzi', 'Duzib133G1034' => 'dzi', 'Duzib138G0207' => 'dzi', 'Duzib138G0491' => 'dzi', 'Duzib151G0812' => 'dzi', 'Duzib151G1166' => 'dzi', 'Duzib168G0192' => 'dzi', 'Duzib211G0077' => 'dzi', 'Duzib212G0429' => 'dzi', 'Duzib212G0472' => 'dzi', 'ECA233G2617' => 'eca', 'ECA236G4188' => 'eca', 'ECA240G0936' => 'eca', 'ECA240G1129' => 'eca', 'ECA247G0623' => 'eca', 'EL10Ac5g10451' => 'bvu', 'EL10Ac5g10453' => 'bvu', 'EL10Ac5g10894' => 'bvu', 'Eucgr.H00192' => 'egr', 'Eucgr.H00193' => 'egr', 'Eucgr.H00194' => 'egr', 'Eucgr.J01562' => 'egr', 'Eucgr.K03301' => 'egr', 'FAN02G0632' => 'fan', 'FAN05G5378' => 'fan', 'FAN09G3247' => 'fan', 'FAN12G0435' => 'fan', 'FAN12G2426' => 'fan', 'FAN14G1707' => 'fan', 'FAN14G4725' => 'fan', 'FAN15G2071' => 'fan', 'FAN17G3065' => 'fan', 'FAN19G1376' => 'fan', 'FAN20G0354' => 'fan', 'FAN20G2429' => 'fan', 'FAN20G2658' => 'fan', 'FAN24G2343' => 'fan', 'FAN27G2362' => 'fan', 'FAN28G1765' => 'fan', 'FvH4_1g16020' => 'fve', 'FvH4_2g04890' => 'fve', 'FvH4_2g22270' => 'fve', 'FvH4_4g02630' => 'fve', 'FvH4_4g02640' => 'fve', 'FvH4_6g02650' => 'fve', 'Glyma.02G140600' => 'gma', 'Glyma.03G159900' => 'gma', 'Glyma.05G234800' => 'gma', 'Glyma.07G269600' => 'gma', 'Glyma.08G042300' => 'gma', 'Glyma.10G033500' => 'gma', 'Glyma.10G185200' => 'gma', 'Glyma.17G004300' => 'gma', 'Glyma.19G161900' => 'gma', 'Glyma.20G205100' => 'gma', 'Glyma.20G205200' => 'gma', 'Gohir.A01G139101' => 'ghi', 'Gohir.A02G035600' => 'ghi', 'Gohir.A02G117901' => 'ghi', 'Gohir.A07G210100' => 'ghi', 'Gohir.A07G210200' => 'ghi', 'Gohir.A08G061100' => 'ghi', 'Gohir.A09G223000' => 'ghi', 'Gohir.A09G223100' => 'ghi', 'Gohir.A10G113900' => 'ghi', 'Gohir.A10G114000' => 'ghi', 'Gohir.D02G042300' => 'ghi', 'Gohir.D07G216100' => 'ghi', 'Gohir.D07G216200' => 'ghi', 'Gohir.D08G070400' => 'ghi', 'Gohir.D09G225000' => 'ghi', 'Gohir.D09G225100' => 'ghi', 'Gohir.D10G152300' => 'ghi', 'Gohir.D10G153200' => 'ghi', 'Gohir.D11G133701' => 'ghi', 'Gorai.004G074100' => 'gra', 'Gorai.005G046800' => 'gra', 'Gorai.006G246500' => 'gra', 'Gorai.006G246600' => 'gra', 'Gorai.007G142900' => 'gra', 'Gorai.011G171000' => 'gra', 'Gorai.011G171100' => 'gra', 'Gorai.013G104300' => 'gra', 'Gorai.013G104400' => 'gra', 'GSVIVG01000754001' => 'vvi', 'GSVIVG01000756001' => 'vvi', 'GSVIVG01010903001' => 'vvi', 'GSVIVG01017623001' => 'vvi', 'GSVIVG01018113001' => 'vvi', 'GSVIVG01018116001' => 'vvi', 'GSVIVG01018118001' => 'vvi', 'HanXRQChr03g0076211' => 'han', 'HanXRQChr03g0092431' => 'han', 'HanXRQChr03g0092441' => 'han', 'HanXRQChr03g0092591' => 'han', 'HanXRQChr03g0092671' => 'han', 'HanXRQChr03g0092681' => 'han', 'HanXRQChr03g0092691' => 'han', 'HanXRQChr03g0092701' => 'han', 'HanXRQChr03g0092721' => 'han', 'HanXRQChr03g0092731' => 'han', 'HanXRQChr04g0113681' => 'han', 'HanXRQChr10g0281371' => 'han', 'HanXRQChr11g0337141' => 'han', 'HanXRQChr13g0424521' => 'han', 'HanXRQChr13g0424531' => 'han', 'HanXRQChr13g0424541' => 'han', 'HanXRQChr16g0498221' => 'han', 'Haze_04377' => 'cav', 'Haze_11298' => 'cav', 'Haze_24547' => 'cav', 'Haze_24550' => 'cav', 'Haze_26587' => 'cav', 'Hma1.2p1_0650F.1_g195410' => 'hma', 'Hma1.2p1_0893F.1_g233470' => 'hma', 'HPP92_006508' => 'vpl', 'HPP92_024780' => 'vpl', 'Hund02688' => 'sun', 'Hund09380' => 'sun', 'Hund09381' => 'sun', 'Hund09832' => 'sun', 'Hund09833' => 'sun', 'Hund11351' => 'sun', 'Hund11513' => 'sun', 'Lalb_Chr06g0162591' => 'lal', 'Lalb_Chr06g0162601' => 'lal', 'Lalb_Chr06g0169321' => 'lal', 'Lalb_Chr09g0330951' => 'lal', 'Lalb_Chr16g0387631' => 'lal', 'Lalb_Chr21g0306241' => 'lal', 'Lalb_Chr25g0290051' => 'lal', 'Lalb_Chr25g0290061' => 'lal', 'Lalb_Chr25g0290071' => 'lal', 'Lj1g0003876' => 'lja', 'Lj1P1207T36' => 'lonja', 'Lj2C1156G12' => 'lonja', 'Lj3A793G39' => 'lonja', 'Lj3C580G2' => 'lonja', 'Lj3C780G2' => 'lonja', 'Lj3C780T4' => 'lonja', 'Lj3C793G9' => 'lonja', 'Lj4g0012960' => 'lja', 'Lj5g0021252' => 'lja', 'Lj5g0021484' => 'lja', 'Lj5g0024528' => 'lja', 'Lj6A399T12' => 'lonja', 'Lj6A656G65' => 'lonja', 'Lsat_1_v5_gn_3_125500' => 'lsa', 'Lsat_1_v5_gn_3_125540' => 'lsa', 'Lsat_1_v5_gn_5_72701' => 'lsa', 'Lsat_1_v5_gn_8_91560' => 'lsa', 'Lsat_1_v5_gn_9_9640' => 'lsa', 'Manes.01G200600' => 'mes', 'Manes.01G200700' => 'mes', 'Manes.03G168900' => 'mes', 'Manes.03G169000' => 'mes', 'Manes.05G085801' => 'mes', 'Manes.05G086200' => 'mes', 'Manes.15G036700' => 'mes', 'Manes.15G036900' => 'mes', 'Mapoly0004s0172' => 'mpo', 'Mapoly0023s0001' => 'mpo', 'Mapoly0142s0012' => 'mpo', 'MBI01_g32854_MAGBIO' => 'mbi', 'MBI11_g24427_MAGBIO' => 'mbi', 'MBI11_g47319_MAGBIO' => 'mbi', 'MCO01G433' => 'mco', 'MD00G1187800' => 'mdo', 'MD04G1226500' => 'mdo', 'MD05G1203900' => 'mdo', 'MD10G1191100' => 'mdo', 'MD12G1243500' => 'mdo', 'MD13G1207000' => 'mdo', 'MD13G1207100' => 'mdo', 'MD16G1208600' => 'mdo', 'Medtr1g050352' => 'mtr', 'Medtr1g070385' => 'mtr', 'Medtr1g070450' => 'mtr', 'Medtr1g075200' => 'mtr', 'Medtr1g075250' => 'mtr', 'Medtr1g075260' => 'mtr', 'Medtr1g475250' => 'mtr', 'Medtr4g075450' => 'mtr', 'Medtr7g096300' => 'mtr', 'Medtr8g105110' => 'mtr', 'MELO3C006470.2' => 'cme', 'MELO3C006471.2' => 'cme', 'MELO3C020772.2' => 'cme', 'MELO3C026780.2' => 'cme', 'MELO3C026781.2' => 'cme', 'Migut.D00390' => 'egut', 'Migut.G00435' => 'egut', 'Migut.G00436' => 'egut', 'Migut.G00718' => 'egut', 'MSTRG.21891' => 'ama', 'MSTRG.26910' => 'ama', 'MSTRG.4099' => 'ama', 'MSTRG.9925' => 'ama', 'Nitab4.5_0000165g0010' => 'nta', 'Nitab4.5_0000209g0180' => 'nta', 'Nitab4.5_0000244g0440' => 'nta', 'Nitab4.5_0000525g0220' => 'nta', 'Nitab4.5_0001597g0020' => 'nta', 'Nitab4.5_0001878g0040' => 'nta', 'Nitab4.5_0001878g0060' => 'nta', 'Nitab4.5_0002838g0100' => 'nta', 'Nitab4.5_0002838g0120' => 'nta', 'Nitab4.5_0004798g0030' => 'nta', 'Nitab4.5_0005420g0010' => 'nta', 'Nitab4.5_0005507g0010' => 'nta', 'Nitab4.5_0005574g0020' => 'nta', 'Nitab4.5_0005838g0010' => 'nta', 'Nitab4.5_0010580g0020' => 'nta', 'Nn1g02599' => 'nnu', 'Nn1g02608' => 'nnu', 'Nn3g17742' => 'nnu', 'Nn3g19534' => 'nnu', 'Nn3g19535' => 'nnu', 'Oeu008790.1' => 'oeu', 'Oeu008792.1' => 'oeu', 'Oeu032590.1' => 'oeu', 'Oeu035349.1' => 'oeu', 'Oeu049791.1' => 'oeu', 'Os01g0774500' => 'osa', 'Os03g0628800' => 'osa', 'Os03g0798600' => 'osa', 'Os05g0508800' => 'osa', 'Peaxi162Scf00036g02018' => 'pax', 'Peaxi162Scf00578g00032' => 'pax', 'Peaxi162Scf00578g00317' => 'pax', 'Peaxi162Scf00785g00114' => 'pax', 'Peaxi162Scf00813g00119' => 'pax', 'Peaxi162Scf00906g00227' => 'pax', 'PGR004G0875' => 'pgr', 'PGR004G2424' => 'pgr', 'PGR031G1239' => 'pgr', 'PGR031G2474' => 'pgr', 'PGR044G0423' => 'pgr', 'PGSC0003DMG400001128' => 'stu', 'PGSC0003DMG400007336' => 'stu', 'PGSC0003DMG400016318' => 'stu', 'PGSC0003DMG400016319' => 'stu', 'PGSC0003DMG400018074' => 'stu', 'Phvul.001G157700' => 'pvu', 'Phvul.002G148550' => 'pvu', 'Phvul.002G320200' => 'pvu', 'Phvul.003G089200' => 'pvu', 'Phvul.007G126000' => 'pvu', 'Phvul.007G126100' => 'pvu', 'Phvul.007G178000' => 'pvu', 'Phvul.007G178200' => 'pvu', 'Potri.002G043000' => 'ptr', 'Potri.002G043200' => 'ptr', 'Potri.003G123750' => 'ptr', 'Potri.005G055401' => 'ptr', 'Potri.005G219700' => 'ptr', 'Potri.005G220000' => 'ptr', 'Potri.008G161901' => 'ptr', 'Potri.008G162000' => 'ptr', 'Potri.008G162400' => 'ptr', 'Potri.010G076900' => 'ptr', 'Pp3c12_9180' => 'ppa', 'Pp3c13_19770' => 'ppa', 'Pp3c14_22950' => 'ppa', 'Pp3c16_12160' => 'ppa', 'Pp3c27_7820' => 'ppa', 'Pp3c2_3490' => 'ppa', 'Pp3c3_23700' => 'ppa', 'Pp3c3_36520' => 'ppa', 'Pp3c4_15250' => 'ppa', 'PRCOL_00007002' => 'pco', 'Prupe.1G030600' => 'ppe', 'Prupe.1G030700' => 'ppe', 'Prupe.6G345200' => 'ppe', 'Prupe.8G230300' => 'ppe', 'Prupe.8G230500' => 'ppe', 'Psat3g059600' => 'psa', 'Psat5g200920' => 'psa', 'Psat6g056440' => 'psa', 'Psat6g057360' => 'psa', 'Psat6g134120' => 'psa', 'Psat6g134160' => 'psa', 'Psat7g008640' => 'psa', 'Psat7g185240' => 'psa', 'PSO017G1330' => 'pso', 'PSO063G6097' => 'pso', 'PSO170G0835' => 'pso', 'PSO170G2499' => 'pso', 'PSO210G5058' => 'pso', 'PSO210G6154' => 'pso', 'PSO585G0031' => 'pso', 'PSO832G0264' => 'pso', 'PSO832G4288' => 'pso', 'QL03p027355' => 'qlo', 'QL03p027430' => 'qlo', 'QL04p081380' => 'qlo', 'QL06p015642' => 'qlo', 'QL06p015650' => 'qlo', 'QL06p015686' => 'qlo', 'QL12p042927' => 'qlo', 'QL93p1863_0035' => 'qlo', 'RcHm_v2.0_Chr3g0450581' => 'rch', 'RcHm_v2.0_Chr4g0390371' => 'rch', 'RcHm_v2.0_Chr4g0390381' => 'rch', 'RcHm_v2.0_Chr4g0390491' => 'rch', 'RcHm_v2.0_Chr4g0390501' => 'rch', 'RcHm_v2.0_Chr6g0289231' => 'rch', 'Rhsim04G0190400' => 'rsi', 'Rhsim04G0190500' => 'rsi', 'Rhsim04G0190600' => 'rsi', 'Rhsim13G0031400' => 'rsi', 'Rhsim13G0165600' => 'rsi', 'RhsimUnG0114600' => 'rsi', 'RhsimUnG0114700' => 'rsi', 'Sabra02G0034800' => 'sbr', 'Sabra02G0035100' => 'sbr', 'Sabra05G0168600' => 'sbr', 'Sabra05G0168800' => 'sbr', 'Sabra08G0123700' => 'sbr', 'Sabra10G0031900' => 'sbr', 'Sabra13G0039000' => 'sbr', 'SalBow2G0782' => 'sbo', 'SalBow2G1403' => 'sbo', 'SalBow4G0074' => 'sbo', 'SalBow4G2635' => 'sbo', 'SalBow5G3010' => 'sbo', 'Sc05g0000870' => 'sci', 'Sc05g0000890' => 'sci', 'Sc13g0005000' => 'sci', 'Sc13g0005030' => 'sci', 'Sc19g0003790' => 'sci', 'Sc19g0003800' => 'sci', 'Sed0003467' => 'sed', 'Sed0009355' => 'sed', 'Sed0009894' => 'sed', 'Sed0011972' => 'sed', 'Sed0021483' => 'sed', 'Sed0021750' => 'sed', 'Sed0026279' => 'sed', 'SEGI_05312' => 'sgi', 'SEGI_10112' => 'sgi', 'SEGI_15835' => 'sgi', 'SEGI_30386' => 'sgi', 'SEGI_34122' => 'sgi', 'SEGI_35063' => 'sgi', 'SGA_v2.0_scaffold101G29794' => 'sas', 'SGA_v2.0_scaffold1G00573' => 'sas', 'SGA_v2.0_scaffold79G25637' => 'sas', 'SGA_v2.0_scaffold88G27283' => 'sas', 'SGA_v2.0_scaffold88G27285' => 'sas', 'SGA_v2.0_scaffold88G27331' => 'sas', 'SHI09937' => 'shi', 'SMO119G0302' => 'smo', 'SMO137G0231' => 'smo', 'SMO367G1151' => 'smo', 'Solyc02g082000.3' => 'sly', 'Solyc06g031670.3' => 'sly', 'Solyc06g053810.3' => 'sly', 'Solyc07g025457.1' => 'sly', 'Solyc08g059740.1' => 'sly', 'Solyc08g059750.3' => 'sly', 'Solyc09g083370.3' => 'sly', 'Solyc12g038950.3' => 'sly', 'Sopen02g026630' => 'spe', 'Sopen06g018930' => 'spe', 'Sopen06g018940' => 'spe', 'Sopen08g009460' => 'spe', 'Sopen09g032290' => 'spe', 'Sp1g03080' => 'spa', 'Sp1g03090' => 'spa', 'Sp1g05480' => 'spa', 'Sp2g07860' => 'spa', 'Sp2g08430' => 'spa', 'Sp2g08440' => 'spa', 'Sp2g26200' => 'spa', 'Sp4g13170' => 'spa', 'Sp6g33840' => 'spa', 'SpUn1204_0010' => 'spa', 'TAR365G0908' => 'tar', 'TAR381G1270' => 'tar', 'TAR381G1651' => 'tar', 'TAR625G1131' => 'tar', 'TAR633G0962' => 'tar', 'TAR633G1729' => 'tar', 'TAR633G1864' => 'tar', 'TAR636G0221' => 'tar', 'TAR636G0314' => 'tar', 'TAR636G3202' => 'tar', 'THA.LOC104800805' => 'tha', 'THA.LOC104801096' => 'tha', 'THA.LOC104801555' => 'tha', 'THA.LOC104808491' => 'tha', 'THA.LOC104808595' => 'tha', 'THA.LOC104815985' => 'tha', 'THA.LOC104822250' => 'tha', 'THA.LOC104826071' => 'tha', 'Thecc.01G265200' => 'tca', 'Thecc.01G265300' => 'tca', 'Thecc.01G265700' => 'tca', 'Thecc.03G109100' => 'tca', 'Thecc.04G245900' => 'tca', 'Thecc.04G246000' => 'tca', 'Thhalv10003334m.g' => 'esa', 'Thhalv10005508m.g' => 'esa', 'Thhalv10005643m.g' => 'esa', 'Thhalv10007316m.g' => 'esa', 'Thhalv10009006m.g' => 'esa', 'Thhalv10009309m.g' => 'esa', 'Thhalv10014917m.g' => 'esa', 'Thhalv10014919m.g' => 'esa', 'Thhalv10015393m.g' => 'esa', 'Thhalv10016515m.g' => 'esa', 'Thhalv10029242m.g' => 'esa', 'TPR.G16654' => 'tpr', 'TPR.G20589' => 'tpr', 'TPR.G23029' => 'tpr', 'TPR.G27731' => 'tpr', 'TPR.G28889' => 'tpr', 'TPR.G28899' => 'tpr', 'TPR.G30846' => 'tpr', 'TPR.G5452' => 'tpr', 'TPR.G5713' => 'tpr', 'TPR.G9046' => 'tpr', 'TPR.G9061' => 'tpr', 'TWI09G1075' => 'twi', 'TWI12G0806' => 'twi', 'TWI18G0108' => 'twi', 'TWI53G1361' => 'twi', 'TWI73G0185' => 'twi', 'TWI73G0427' => 'twi', 'unitig_37.g12001' => 'ugi', 'unitig_747.g21660' => 'ugi', 'unitig_748.g7232' => 'ugi', 'unitig_748.g7315' => 'ugi', 'unitig_85.g27262' => 'ugi', 'unitig_92.g28220' => 'ugi', 'vmacro02632' => 'vma', 'vmacro08410' => 'vma', 'vmacro08411' => 'vma', 'vmacro15407' => 'vma', 'VMungo0251G3619' => 'vmu', 'VMungo0720G1204' => 'vmu', 'VMungo0720G1918' => 'vmu', 'VMungo0720G2387' => 'vmu', 'VMungo0720G2961' => 'vmu', 'VMungo1215G2154' => 'vmu', 'VMungo1383G2411' => 'vmu', 'Zm00001eb051130' => 'zma', 'Zm00001eb116830' => 'zma', 'Zm00001eb116850' => 'zma', 'Zm00001eb151740' => 'zma', 'Zm00001eb292360' => 'zma', 'Zm00001eb301640' => 'zma' ), 'gf_id' => 'HOM05D000856', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000856' ), 'data_identifier' => 'HOM05D000856', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000856', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p00010' => 'bna', 'A03p04160' => 'bna', 'A03p17160' => 'bna', 'A04p23370' => 'bna', 'A05p14860' => 'bna', 'A08p37020' => 'bna', 'A09p08050' => 'bna', 'A09p66800' => 'bna', 'A09p67940' => 'bna', 'A10p02680' => 'bna', 'A10p05320' => 'bna', 'Aa31LG1G20560' => 'aar', 'Aa31LG1G20610' => 'aar', 'Aa31LG1G7810' => 'aar', 'Aa31LG5G3590' => 'aar', 'Aa31LG5G6140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3819' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4683' => 'aag', 'Actinidia04480' => 'ach', 'Actinidia05466' => 'ach', 'Actinidia08445' => 'ach', 'Actinidia21170' => 'ach', 'Actinidia24812' => 'ach', 'Actinidia24951' => 'ach', 'Actinidia40088' => 'ach', 'Ah.02g111660' => 'amhyb', 'Ah.11g048900' => 'amhyb', 'Ah.11g049910' => 'amhyb', 'AL1G13870' => 'aly', 'AL1G13880' => 'aly', 'AL1G16760' => 'aly', 'AL390U10020' => 'aly', 'AL4G25520' => 'aly', 'AL6G19890' => 'aly', 'AL6G19900' => 'aly', 'AL6G19910' => 'aly', 'AL8G40100' => 'aly', 'Aqoxy2G03562' => 'aox', 'Aqoxy5G00316' => 'aox', 'Aqoxy5G00926' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1628KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1H403S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2FU6SJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.882I6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8YRY2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YN1SN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AF70II' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZA8L1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F916KL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHRD8H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KTZ8QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S22EMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8M29T' => 'arhy', 'AT1G04270' => 'ath', 'AT1G04280' => 'ath', 'AT1G06750' => 'ath', 'AT1G33850' => 'ath', 'AT2G30630' => 'ath', 'AT5G09490' => 'ath', 'AT5G09500' => 'ath', 'AT5G09510' => 'ath', 'AT5G43640' => 'ath', 'AT5G63070' => 'ath', 'ATR0605G315' => 'atr', 'Atru.chr11.175' => 'acertr', 'Atru.chr11.653' => 'acertr', 'Atru.chr3.1616' => 'acertr', 'Atru.chr4.2230' => 'acertr', 'Atru.chr4.2232' => 'acertr', 'Atru.chr5.1598' => 'acertr', 'Atru.chr5.1600' => 'acertr', 'Atru.chr5.2188' => 'acertr', 'AUR62008326' => 'cqu', 'AUR62011922' => 'cqu', 'AUR62011924' => 'cqu', 'AUR62021771' => 'cqu', 'AUR62032237' => 'cqu', 'AUR62032240' => 'cqu', 'BcaB01g05572' => 'bca', 'BcaB02g10337' => 'bca', 'BcaB04g19944' => 'bca', 'BcaB05g21548' => 'bca', 'BcaB05g21549' => 'bca', 'BcaB05g23227' => 'bca', 'BcaB06g26256' => 'bca', 'BcaB06g26257' => 'bca', 'BcaB06g28379' => 'bca', 'BcaC02g11159' => 'bca', 'BcaC03g13258' => 'bca', 'BcaC03g13259' => 'bca', 'BcaC05g24456' => 'bca', 'BcaC05g24457' => 'bca', 'BcaC07g36922' => 'bca', 'BcaC07g36923' => 'bca', 'BcaC07g42050' => 'bca', 'BcaC07g42176' => 'bca', 'BcaC07g42195' => 'bca', 'BcaC07g42196' => 'bca', 'BcaNung06674' => 'bca', 'BolC2t06351H' => 'bol', 'BolC2t06352H' => 'bol', 'BolC3t12993H' => 'bol', 'BolC4t23525H' => 'bol', 'BolC4t27475H' => 'bol', 'BolC5t29025H' => 'bol', 'BolC5t29026H' => 'bol', 'BolC8t46898H' => 'bol', 'BolC8t46899H' => 'bol', 'BolC8t52630H' => 'bol', 'BolC8t52765H' => 'bol', 'BolC9t53824H' => 'bol', 'BraA03t09760Z' => 'bra', 'BraA03t10990Z' => 'bra', 'BraA05t20413Z' => 'bra', 'BraA08t35602Z' => 'bra', 'BraA09t36458Z' => 'bra', 'BraA09t42018Z' => 'bra', 'BraA09t42129Z' => 'bra', 'BraA10t42536Z' => 'bra', 'BraA10t42537Z' => 'bra', 'C01p10690' => 'bna', 'C02p03890' => 'bna', 'C02p03900' => 'bna', 'C03p04620' => 'bna', 'C04p19870' => 'bna', 'C04p59670' => 'bna', 'C05p02460' => 'bna', 'C05p02470' => 'bna', 'C08p00980' => 'bna', 'C08p00990' => 'bna', 'C08p51030' => 'bna', 'C08p52360' => 'bna', 'C09p09120' => 'bna', 'CAN.G19.15' => 'can', 'CAN.G251.10' => 'can', 'CAN.G251.9' => 'can', 'CAN.G398.24' => 'can', 'CAN.G410.32' => 'can', 'CAN.G881.2' => 'can', 'CANSAT01G3025' => 'cansat', 'CANSAT78G1211' => 'cansat', 'CANSAT78G1218' => 'cansat', 'CANSAT78G1521' => 'cansat', 'CANSAT78G1670' => 'cansat', 'CARHR003600' => 'chi', 'CARHR003610' => 'chi', 'CARHR006290' => 'chi', 'CARHR006430' => 'chi', 'CARHR124110' => 'chi', 'CARHR203870' => 'chi', 'CARHR203880' => 'chi', 'CARHR203890' => 'chi', 'CARHR276880' => 'chi', 'Carub.0001s0346' => 'cru', 'Carub.0001s0347' => 'cru', 'Carub.0001s0607' => 'cru', 'Carub.0003s2768' => 'cru', 'Carub.0003s2769' => 'cru', 'Carub.0004s1178' => 'cru', 'Carub.0006s0806' => 'cru', 'Carub.0006s0807' => 'cru', 'Carub.0006s0808' => 'cru', 'Carub.0008s0501' => 'cru', 'Carub.0008s2379' => 'cru', 'Ca_08655_v3' => 'car', 'Ca_08922_v3' => 'car', 'Ca_08923_v3' => 'car', 'Ca_09119_v3' => 'car', 'Ca_09703_v3' => 'car', 'Ca_09705_v3' => 'car', 'Ca_09835_v3' => 'car', 'Ca_26403_v3' => 'car', 'Ca_30719_v3' => 'car', 'CBR_g17958' => 'cbr', 'CBR_g40516' => 'cbr', 'Cc00_g05350' => 'ccan', 'Cc01_g18690' => 'ccan', 'Cc03_g04830' => 'ccan', 'Cc03_g04850' => 'ccan', 'CDE02G4469' => 'cde', 'CDE06G0883' => 'cde', 'CDE06G1295' => 'cde', 'CDE06G1390' => 'cde', 'CDE07G0584' => 'cde', 'CDE07G1084' => 'cde', 'CDE08G1259' => 'cde', 'Cfa002341' => 'cfa', 'Cfa024337' => 'cfa', 'Ciclev10004749m.g' => 'ccl', 'Ciclev10006127m.g' => 'ccl', 'Ciclev10019720m.g' => 'ccl', 'Ciclev10022652m.g' => 'ccl', 'CiPaw.01G190400' => 'cil', 'CiPaw.01G190500' => 'cil', 'CiPaw.02G116400' => 'cil', 'CiPaw.02G116500' => 'cil', 'CiPaw.04G183000' => 'cil', 'CiPaw.04G183300' => 'cil', 'ClCG05G004610' => 'cla', 'ClCG05G004620' => 'cla', 'ClCG06G006730' => 'cla', 'ClCG06G006740' => 'cla', 'ClCG11G003690' => 'cla', 'COL.COLO4_08276' => 'col', 'COL.COLO4_08277' => 'col', 'COL.COLO4_15787' => 'col', 'COL.COLO4_15789' => 'col', 'Cpa.g.c44815' => 'cpa', 'Cpa.g.sc52.144' => 'cpa', 'Cpa.g.sc58.46' => 'cpa', 'Cpa.g.sc58.47' => 'cpa', 'Cre08.g360900' => 'cre', 'CsaV3_2G013030' => 'csa', 'CsaV3_2G013050' => 'csa', 'CsaV3_2G015620' => 'csa', 'CsaV3_3G012590' => 'csa', 'CsaV3_3G012600' => 'csa', 'CSS0001641' => 'camsi', 'CSS0008310' => 'camsi', 'CSS0013011' => 'camsi', 'CSS0017147' => 'camsi', 'CSS0022970' => 'camsi', 'CSS0025655' => 'camsi', 'CSS0028665' => 'camsi', 'CSS0029117' => 'camsi', 'CSS0032024' => 'camsi', 'CSS0039681' => 'camsi', 'CSS0046516' => 'camsi', 'CSS0050307' => 'camsi', 'DCAR_005871' => 'dca', 'DCAR_007342' => 'dca', 'DCAR_024228' => 'dca', 'DCAR_027277' => 'dca', 'DCAR_030718' => 'dca', 'Dinv20287' => 'din', 'Dinv22461' => 'din', 'Dinv22464' => 'din', 'Dinv29912' => 'din', 'Dinv29913' => 'din', 'Dinv34580' => 'din', 'Dinv34582' => 'din', 'Dinv44632' => 'din', 'Duzib052G0266' => 'dzi', 'Duzib133G0907' => 'dzi', 'Duzib133G1034' => 'dzi', 'Duzib138G0207' => 'dzi', 'Duzib138G0491' => 'dzi', 'Duzib151G0812' => 'dzi', 'Duzib151G1166' => 'dzi', 'Duzib168G0192' => 'dzi', 'Duzib211G0077' => 'dzi', 'Duzib212G0429' => 'dzi', 'Duzib212G0472' => 'dzi', 'ECA233G2617' => 'eca', 'ECA236G4188' => 'eca', 'ECA240G0936' => 'eca', 'ECA240G1129' => 'eca', 'ECA247G0623' => 'eca', 'EL10Ac5g10451' => 'bvu', 'EL10Ac5g10453' => 'bvu', 'EL10Ac5g10894' => 'bvu', 'Eucgr.H00192' => 'egr', 'Eucgr.H00193' => 'egr', 'Eucgr.H00194' => 'egr', 'Eucgr.J01562' => 'egr', 'Eucgr.K03301' => 'egr', 'FAN02G0632' => 'fan', 'FAN05G5378' => 'fan', 'FAN09G3247' => 'fan', 'FAN12G0435' => 'fan', 'FAN12G2426' => 'fan', 'FAN14G1707' => 'fan', 'FAN14G4725' => 'fan', 'FAN15G2071' => 'fan', 'FAN17G3065' => 'fan', 'FAN19G1376' => 'fan', 'FAN20G0354' => 'fan', 'FAN20G2429' => 'fan', 'FAN20G2658' => 'fan', 'FAN24G2343' => 'fan', 'FAN27G2362' => 'fan', 'FAN28G1765' => 'fan', 'FvH4_1g16020' => 'fve', 'FvH4_2g04890' => 'fve', 'FvH4_2g22270' => 'fve', 'FvH4_4g02630' => 'fve', 'FvH4_4g02640' => 'fve', 'FvH4_6g02650' => 'fve', 'Glyma.02G140600' => 'gma', 'Glyma.03G159900' => 'gma', 'Glyma.05G234800' => 'gma', 'Glyma.07G269600' => 'gma', 'Glyma.08G042300' => 'gma', 'Glyma.10G033500' => 'gma', 'Glyma.10G185200' => 'gma', 'Glyma.17G004300' => 'gma', 'Glyma.19G161900' => 'gma', 'Glyma.20G205100' => 'gma', 'Glyma.20G205200' => 'gma', 'Gohir.A01G139101' => 'ghi', 'Gohir.A02G035600' => 'ghi', 'Gohir.A02G117901' => 'ghi', 'Gohir.A07G210100' => 'ghi', 'Gohir.A07G210200' => 'ghi', 'Gohir.A08G061100' => 'ghi', 'Gohir.A09G223000' => 'ghi', 'Gohir.A09G223100' => 'ghi', 'Gohir.A10G113900' => 'ghi', 'Gohir.A10G114000' => 'ghi', 'Gohir.D02G042300' => 'ghi', 'Gohir.D07G216100' => 'ghi', 'Gohir.D07G216200' => 'ghi', 'Gohir.D08G070400' => 'ghi', 'Gohir.D09G225000' => 'ghi', 'Gohir.D09G225100' => 'ghi', 'Gohir.D10G152300' => 'ghi', 'Gohir.D10G153200' => 'ghi', 'Gohir.D11G133701' => 'ghi', 'Gorai.004G074100' => 'gra', 'Gorai.005G046800' => 'gra', 'Gorai.006G246500' => 'gra', 'Gorai.006G246600' => 'gra', 'Gorai.007G142900' => 'gra', 'Gorai.011G171000' => 'gra', 'Gorai.011G171100' => 'gra', 'Gorai.013G104300' => 'gra', 'Gorai.013G104400' => 'gra', 'GSVIVG01000754001' => 'vvi', 'GSVIVG01000756001' => 'vvi', 'GSVIVG01010903001' => 'vvi', 'GSVIVG01017623001' => 'vvi', 'GSVIVG01018113001' => 'vvi', 'GSVIVG01018116001' => 'vvi', 'GSVIVG01018118001' => 'vvi', 'HanXRQChr03g0076211' => 'han', 'HanXRQChr03g0092431' => 'han', 'HanXRQChr03g0092441' => 'han', 'HanXRQChr03g0092591' => 'han', 'HanXRQChr03g0092671' => 'han', 'HanXRQChr03g0092681' => 'han', 'HanXRQChr03g0092691' => 'han', 'HanXRQChr03g0092701' => 'han', 'HanXRQChr03g0092721' => 'han', 'HanXRQChr03g0092731' => 'han', 'HanXRQChr04g0113681' => 'han', 'HanXRQChr10g0281371' => 'han', 'HanXRQChr11g0337141' => 'han', 'HanXRQChr13g0424521' => 'han', 'HanXRQChr13g0424531' => 'han', 'HanXRQChr13g0424541' => 'han', 'HanXRQChr16g0498221' => 'han', 'Haze_04377' => 'cav', 'Haze_11298' => 'cav', 'Haze_24547' => 'cav', 'Haze_24550' => 'cav', 'Haze_26587' => 'cav', 'Hma1.2p1_0650F.1_g195410' => 'hma', 'Hma1.2p1_0893F.1_g233470' => 'hma', 'HPP92_006508' => 'vpl', 'HPP92_024780' => 'vpl', 'Hund02688' => 'sun', 'Hund09380' => 'sun', 'Hund09381' => 'sun', 'Hund09832' => 'sun', 'Hund09833' => 'sun', 'Hund11351' => 'sun', 'Hund11513' => 'sun', 'Lalb_Chr06g0162591' => 'lal', 'Lalb_Chr06g0162601' => 'lal', 'Lalb_Chr06g0169321' => 'lal', 'Lalb_Chr09g0330951' => 'lal', 'Lalb_Chr16g0387631' => 'lal', 'Lalb_Chr21g0306241' => 'lal', 'Lalb_Chr25g0290051' => 'lal', 'Lalb_Chr25g0290061' => 'lal', 'Lalb_Chr25g0290071' => 'lal', 'Lj1g0003876' => 'lja', 'Lj1P1207T36' => 'lonja', 'Lj2C1156G12' => 'lonja', 'Lj3A793G39' => 'lonja', 'Lj3C580G2' => 'lonja', 'Lj3C780G2' => 'lonja', 'Lj3C780T4' => 'lonja', 'Lj3C793G9' => 'lonja', 'Lj4g0012960' => 'lja', 'Lj5g0021252' => 'lja', 'Lj5g0021484' => 'lja', 'Lj5g0024528' => 'lja', 'Lj6A399T12' => 'lonja', 'Lj6A656G65' => 'lonja', 'Lsat_1_v5_gn_3_125500' => 'lsa', 'Lsat_1_v5_gn_3_125540' => 'lsa', 'Lsat_1_v5_gn_5_72701' => 'lsa', 'Lsat_1_v5_gn_8_91560' => 'lsa', 'Lsat_1_v5_gn_9_9640' => 'lsa', 'Manes.01G200600' => 'mes', 'Manes.01G200700' => 'mes', 'Manes.03G168900' => 'mes', 'Manes.03G169000' => 'mes', 'Manes.05G085801' => 'mes', 'Manes.05G086200' => 'mes', 'Manes.15G036700' => 'mes', 'Manes.15G036900' => 'mes', 'Mapoly0004s0172' => 'mpo', 'Mapoly0023s0001' => 'mpo', 'Mapoly0142s0012' => 'mpo', 'MBI01_g32854_MAGBIO' => 'mbi', 'MBI11_g24427_MAGBIO' => 'mbi', 'MBI11_g47319_MAGBIO' => 'mbi', 'MCO01G433' => 'mco', 'MD00G1187800' => 'mdo', 'MD04G1226500' => 'mdo', 'MD05G1203900' => 'mdo', 'MD10G1191100' => 'mdo', 'MD12G1243500' => 'mdo', 'MD13G1207000' => 'mdo', 'MD13G1207100' => 'mdo', 'MD16G1208600' => 'mdo', 'Medtr1g050352' => 'mtr', 'Medtr1g070385' => 'mtr', 'Medtr1g070450' => 'mtr', 'Medtr1g075200' => 'mtr', 'Medtr1g075250' => 'mtr', 'Medtr1g075260' => 'mtr', 'Medtr1g475250' => 'mtr', 'Medtr4g075450' => 'mtr', 'Medtr7g096300' => 'mtr', 'Medtr8g105110' => 'mtr', 'MELO3C006470.2' => 'cme', 'MELO3C006471.2' => 'cme', 'MELO3C020772.2' => 'cme', 'MELO3C026780.2' => 'cme', 'MELO3C026781.2' => 'cme', 'Migut.D00390' => 'egut', 'Migut.G00435' => 'egut', 'Migut.G00436' => 'egut', 'Migut.G00718' => 'egut', 'MSTRG.21891' => 'ama', 'MSTRG.26910' => 'ama', 'MSTRG.4099' => 'ama', 'MSTRG.9925' => 'ama', 'Nitab4.5_0000165g0010' => 'nta', 'Nitab4.5_0000209g0180' => 'nta', 'Nitab4.5_0000244g0440' => 'nta', 'Nitab4.5_0000525g0220' => 'nta', 'Nitab4.5_0001597g0020' => 'nta', 'Nitab4.5_0001878g0040' => 'nta', 'Nitab4.5_0001878g0060' => 'nta', 'Nitab4.5_0002838g0100' => 'nta', 'Nitab4.5_0002838g0120' => 'nta', 'Nitab4.5_0004798g0030' => 'nta', 'Nitab4.5_0005420g0010' => 'nta', 'Nitab4.5_0005507g0010' => 'nta', 'Nitab4.5_0005574g0020' => 'nta', 'Nitab4.5_0005838g0010' => 'nta', 'Nitab4.5_0010580g0020' => 'nta', 'Nn1g02599' => 'nnu', 'Nn1g02608' => 'nnu', 'Nn3g17742' => 'nnu', 'Nn3g19534' => 'nnu', 'Nn3g19535' => 'nnu', 'Oeu008790.1' => 'oeu', 'Oeu008792.1' => 'oeu', 'Oeu032590.1' => 'oeu', 'Oeu035349.1' => 'oeu', 'Oeu049791.1' => 'oeu', 'Os01g0774500' => 'osa', 'Os03g0628800' => 'osa', 'Os03g0798600' => 'osa', 'Os05g0508800' => 'osa', 'Peaxi162Scf00036g02018' => 'pax', 'Peaxi162Scf00578g00032' => 'pax', 'Peaxi162Scf00578g00317' => 'pax', 'Peaxi162Scf00785g00114' => 'pax', 'Peaxi162Scf00813g00119' => 'pax', 'Peaxi162Scf00906g00227' => 'pax', 'PGR004G0875' => 'pgr', 'PGR004G2424' => 'pgr', 'PGR031G1239' => 'pgr', 'PGR031G2474' => 'pgr', 'PGR044G0423' => 'pgr', 'PGSC0003DMG400001128' => 'stu', 'PGSC0003DMG400007336' => 'stu', 'PGSC0003DMG400016318' => 'stu', 'PGSC0003DMG400016319' => 'stu', 'PGSC0003DMG400018074' => 'stu', 'Phvul.001G157700' => 'pvu', 'Phvul.002G148550' => 'pvu', 'Phvul.002G320200' => 'pvu', 'Phvul.003G089200' => 'pvu', 'Phvul.007G126000' => 'pvu', 'Phvul.007G126100' => 'pvu', 'Phvul.007G178000' => 'pvu', 'Phvul.007G178200' => 'pvu', 'Potri.002G043000' => 'ptr', 'Potri.002G043200' => 'ptr', 'Potri.003G123750' => 'ptr', 'Potri.005G055401' => 'ptr', 'Potri.005G219700' => 'ptr', 'Potri.005G220000' => 'ptr', 'Potri.008G161901' => 'ptr', 'Potri.008G162000' => 'ptr', 'Potri.008G162400' => 'ptr', 'Potri.010G076900' => 'ptr', 'Pp3c12_9180' => 'ppa', 'Pp3c13_19770' => 'ppa', 'Pp3c14_22950' => 'ppa', 'Pp3c16_12160' => 'ppa', 'Pp3c27_7820' => 'ppa', 'Pp3c2_3490' => 'ppa', 'Pp3c3_23700' => 'ppa', 'Pp3c3_36520' => 'ppa', 'Pp3c4_15250' => 'ppa', 'PRCOL_00007002' => 'pco', 'Prupe.1G030600' => 'ppe', 'Prupe.1G030700' => 'ppe', 'Prupe.6G345200' => 'ppe', 'Prupe.8G230300' => 'ppe', 'Prupe.8G230500' => 'ppe', 'Psat3g059600' => 'psa', 'Psat5g200920' => 'psa', 'Psat6g056440' => 'psa', 'Psat6g057360' => 'psa', 'Psat6g134120' => 'psa', 'Psat6g134160' => 'psa', 'Psat7g008640' => 'psa', 'Psat7g185240' => 'psa', 'PSO017G1330' => 'pso', 'PSO063G6097' => 'pso', 'PSO170G0835' => 'pso', 'PSO170G2499' => 'pso', 'PSO210G5058' => 'pso', 'PSO210G6154' => 'pso', 'PSO585G0031' => 'pso', 'PSO832G0264' => 'pso', 'PSO832G4288' => 'pso', 'QL03p027355' => 'qlo', 'QL03p027430' => 'qlo', 'QL04p081380' => 'qlo', 'QL06p015642' => 'qlo', 'QL06p015650' => 'qlo', 'QL06p015686' => 'qlo', 'QL12p042927' => 'qlo', 'QL93p1863_0035' => 'qlo', 'RcHm_v2.0_Chr3g0450581' => 'rch', 'RcHm_v2.0_Chr4g0390371' => 'rch', 'RcHm_v2.0_Chr4g0390381' => 'rch', 'RcHm_v2.0_Chr4g0390491' => 'rch', 'RcHm_v2.0_Chr4g0390501' => 'rch', 'RcHm_v2.0_Chr6g0289231' => 'rch', 'Rhsim04G0190400' => 'rsi', 'Rhsim04G0190500' => 'rsi', 'Rhsim04G0190600' => 'rsi', 'Rhsim13G0031400' => 'rsi', 'Rhsim13G0165600' => 'rsi', 'RhsimUnG0114600' => 'rsi', 'RhsimUnG0114700' => 'rsi', 'Sabra02G0034800' => 'sbr', 'Sabra02G0035100' => 'sbr', 'Sabra05G0168600' => 'sbr', 'Sabra05G0168800' => 'sbr', 'Sabra08G0123700' => 'sbr', 'Sabra10G0031900' => 'sbr', 'Sabra13G0039000' => 'sbr', 'SalBow2G0782' => 'sbo', 'SalBow2G1403' => 'sbo', 'SalBow4G0074' => 'sbo', 'SalBow4G2635' => 'sbo', 'SalBow5G3010' => 'sbo', 'Sc05g0000870' => 'sci', 'Sc05g0000890' => 'sci', 'Sc13g0005000' => 'sci', 'Sc13g0005030' => 'sci', 'Sc19g0003790' => 'sci', 'Sc19g0003800' => 'sci', 'Sed0003467' => 'sed', 'Sed0009355' => 'sed', 'Sed0009894' => 'sed', 'Sed0011972' => 'sed', 'Sed0021483' => 'sed', 'Sed0021750' => 'sed', 'Sed0026279' => 'sed', 'SEGI_05312' => 'sgi', 'SEGI_10112' => 'sgi', 'SEGI_15835' => 'sgi', 'SEGI_30386' => 'sgi', 'SEGI_34122' => 'sgi', 'SEGI_35063' => 'sgi', 'SGA_v2.0_scaffold101G29794' => 'sas', 'SGA_v2.0_scaffold1G00573' => 'sas', 'SGA_v2.0_scaffold79G25637' => 'sas', 'SGA_v2.0_scaffold88G27283' => 'sas', 'SGA_v2.0_scaffold88G27285' => 'sas', 'SGA_v2.0_scaffold88G27331' => 'sas', 'SHI09937' => 'shi', 'SMO119G0302' => 'smo', 'SMO137G0231' => 'smo', 'SMO367G1151' => 'smo', 'Solyc02g082000.3' => 'sly', 'Solyc06g031670.3' => 'sly', 'Solyc06g053810.3' => 'sly', 'Solyc07g025457.1' => 'sly', 'Solyc08g059740.1' => 'sly', 'Solyc08g059750.3' => 'sly', 'Solyc09g083370.3' => 'sly', 'Solyc12g038950.3' => 'sly', 'Sopen02g026630' => 'spe', 'Sopen06g018930' => 'spe', 'Sopen06g018940' => 'spe', 'Sopen08g009460' => 'spe', 'Sopen09g032290' => 'spe', 'Sp1g03080' => 'spa', 'Sp1g03090' => 'spa', 'Sp1g05480' => 'spa', 'Sp2g07860' => 'spa', 'Sp2g08430' => 'spa', 'Sp2g08440' => 'spa', 'Sp2g26200' => 'spa', 'Sp4g13170' => 'spa', 'Sp6g33840' => 'spa', 'SpUn1204_0010' => 'spa', 'TAR365G0908' => 'tar', 'TAR381G1270' => 'tar', 'TAR381G1651' => 'tar', 'TAR625G1131' => 'tar', 'TAR633G0962' => 'tar', 'TAR633G1729' => 'tar', 'TAR633G1864' => 'tar', 'TAR636G0221' => 'tar', 'TAR636G0314' => 'tar', 'TAR636G3202' => 'tar', 'THA.LOC104800805' => 'tha', 'THA.LOC104801096' => 'tha', 'THA.LOC104801555' => 'tha', 'THA.LOC104808491' => 'tha', 'THA.LOC104808595' => 'tha', 'THA.LOC104815985' => 'tha', 'THA.LOC104822250' => 'tha', 'THA.LOC104826071' => 'tha', 'Thecc.01G265200' => 'tca', 'Thecc.01G265300' => 'tca', 'Thecc.01G265700' => 'tca', 'Thecc.03G109100' => 'tca', 'Thecc.04G245900' => 'tca', 'Thecc.04G246000' => 'tca', 'Thhalv10003334m.g' => 'esa', 'Thhalv10005508m.g' => 'esa', 'Thhalv10005643m.g' => 'esa', 'Thhalv10007316m.g' => 'esa', 'Thhalv10009006m.g' => 'esa', 'Thhalv10009309m.g' => 'esa', 'Thhalv10014917m.g' => 'esa', 'Thhalv10014919m.g' => 'esa', 'Thhalv10015393m.g' => 'esa', 'Thhalv10016515m.g' => 'esa', 'Thhalv10029242m.g' => 'esa', 'TPR.G16654' => 'tpr', 'TPR.G20589' => 'tpr', 'TPR.G23029' => 'tpr', 'TPR.G27731' => 'tpr', 'TPR.G28889' => 'tpr', 'TPR.G28899' => 'tpr', 'TPR.G30846' => 'tpr', 'TPR.G5452' => 'tpr', 'TPR.G5713' => 'tpr', 'TPR.G9046' => 'tpr', 'TPR.G9061' => 'tpr', 'TWI09G1075' => 'twi', 'TWI12G0806' => 'twi', 'TWI18G0108' => 'twi', 'TWI53G1361' => 'twi', 'TWI73G0185' => 'twi', 'TWI73G0427' => 'twi', 'unitig_37.g12001' => 'ugi', 'unitig_747.g21660' => 'ugi', 'unitig_748.g7232' => 'ugi', 'unitig_748.g7315' => 'ugi', 'unitig_85.g27262' => 'ugi', 'unitig_92.g28220' => 'ugi', 'vmacro02632' => 'vma', 'vmacro08410' => 'vma', 'vmacro08411' => 'vma', 'vmacro15407' => 'vma', 'VMungo0251G3619' => 'vmu', 'VMungo0720G1204' => 'vmu', 'VMungo0720G1918' => 'vmu', 'VMungo0720G2387' => 'vmu', 'VMungo0720G2961' => 'vmu', 'VMungo1215G2154' => 'vmu', 'VMungo1383G2411' => 'vmu', 'Zm00001eb051130' => 'zma', 'Zm00001eb116830' => 'zma', 'Zm00001eb116850' => 'zma', 'Zm00001eb151740' => 'zma', 'Zm00001eb292360' => 'zma', 'Zm00001eb301640' => 'zma' ) $gf_id = 'HOM05D000856' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000856' ) $data_identifier = 'HOM05D000856' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 13, 'ath' => (int) 10, 'atr' => (int) 1, 'acertr' => (int) 8, 'cqu' => (int) 6, 'bca' => (int) 21, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 11, 'car' => (int) 9, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 8, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 5, 'fan' => (int) 16, 'fve' => (int) 6, 'gma' => (int) 11, 'ghi' => (int) 19, 'gra' => (int) 9, 'vvi' => (int) 7, 'han' => (int) 17, 'cav' => (int) 5, 'hma' => (int) 2, 'vpl' => (int) 2, 'sun' => (int) 7, 'lal' => (int) 9, 'lja' => (int) 5, 'lonja' => (int) 9, 'lsa' => (int) 5, 'mes' => (int) 8, 'mpo' => (int) 3, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 10, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 15, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 9, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 9, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 6, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 5, 'spa' => (int) 10, 'tar' => (int) 10, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 11, 'tpr' => (int) 11, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 4, 'vmu' => (int) 7, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb301640' $species_info = array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ) $local_species = 'psa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000856', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p00010' => 'bna', 'A03p04160' => 'bna', 'A03p17160' => 'bna', 'A04p23370' => 'bna', 'A05p14860' => 'bna', 'A08p37020' => 'bna', 'A09p08050' => 'bna', 'A09p66800' => 'bna', 'A09p67940' => 'bna', 'A10p02680' => 'bna', 'A10p05320' => 'bna', 'Aa31LG1G20560' => 'aar', 'Aa31LG1G20610' => 'aar', 'Aa31LG1G7810' => 'aar', 'Aa31LG5G3590' => 'aar', 'Aa31LG5G6140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3819' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4683' => 'aag', 'Actinidia04480' => 'ach', 'Actinidia05466' => 'ach', 'Actinidia08445' => 'ach', 'Actinidia21170' => 'ach', 'Actinidia24812' => 'ach', 'Actinidia24951' => 'ach', 'Actinidia40088' => 'ach', 'Ah.02g111660' => 'amhyb', 'Ah.11g048900' => 'amhyb', 'Ah.11g049910' => 'amhyb', 'AL1G13870' => 'aly', 'AL1G13880' => 'aly', 'AL1G16760' => 'aly', 'AL390U10020' => 'aly', 'AL4G25520' => 'aly', 'AL6G19890' => 'aly', 'AL6G19900' => 'aly', 'AL6G19910' => 'aly', 'AL8G40100' => 'aly', 'Aqoxy2G03562' => 'aox', 'Aqoxy5G00316' => 'aox', 'Aqoxy5G00926' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1628KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1H403S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2FU6SJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.882I6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8YRY2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YN1SN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AF70II' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZA8L1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F916KL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHRD8H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KTZ8QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S22EMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8M29T' => 'arhy', 'AT1G04270' => 'ath', 'AT1G04280' => 'ath', 'AT1G06750' => 'ath', 'AT1G33850' => 'ath', 'AT2G30630' => 'ath', 'AT5G09490' => 'ath', 'AT5G09500' => 'ath', 'AT5G09510' => 'ath', 'AT5G43640' => 'ath', 'AT5G63070' => 'ath', 'ATR0605G315' => 'atr', 'Atru.chr11.175' => 'acertr', 'Atru.chr11.653' => 'acertr', 'Atru.chr3.1616' => 'acertr', 'Atru.chr4.2230' => 'acertr', 'Atru.chr4.2232' => 'acertr', 'Atru.chr5.1598' => 'acertr', 'Atru.chr5.1600' => 'acertr', 'Atru.chr5.2188' => 'acertr', 'AUR62008326' => 'cqu', 'AUR62011922' => 'cqu', 'AUR62011924' => 'cqu', 'AUR62021771' => 'cqu', 'AUR62032237' => 'cqu', 'AUR62032240' => 'cqu', 'BcaB01g05572' => 'bca', 'BcaB02g10337' => 'bca', 'BcaB04g19944' => 'bca', 'BcaB05g21548' => 'bca', 'BcaB05g21549' => 'bca', 'BcaB05g23227' => 'bca', 'BcaB06g26256' => 'bca', 'BcaB06g26257' => 'bca', 'BcaB06g28379' => 'bca', 'BcaC02g11159' => 'bca', 'BcaC03g13258' => 'bca', 'BcaC03g13259' => 'bca', 'BcaC05g24456' => 'bca', 'BcaC05g24457' => 'bca', 'BcaC07g36922' => 'bca', 'BcaC07g36923' => 'bca', 'BcaC07g42050' => 'bca', 'BcaC07g42176' => 'bca', 'BcaC07g42195' => 'bca', 'BcaC07g42196' => 'bca', 'BcaNung06674' => 'bca', 'BolC2t06351H' => 'bol', 'BolC2t06352H' => 'bol', 'BolC3t12993H' => 'bol', 'BolC4t23525H' => 'bol', 'BolC4t27475H' => 'bol', 'BolC5t29025H' => 'bol', 'BolC5t29026H' => 'bol', 'BolC8t46898H' => 'bol', 'BolC8t46899H' => 'bol', 'BolC8t52630H' => 'bol', 'BolC8t52765H' => 'bol', 'BolC9t53824H' => 'bol', 'BraA03t09760Z' => 'bra', 'BraA03t10990Z' => 'bra', 'BraA05t20413Z' => 'bra', 'BraA08t35602Z' => 'bra', 'BraA09t36458Z' => 'bra', 'BraA09t42018Z' => 'bra', 'BraA09t42129Z' => 'bra', 'BraA10t42536Z' => 'bra', 'BraA10t42537Z' => 'bra', 'C01p10690' => 'bna', 'C02p03890' => 'bna', 'C02p03900' => 'bna', 'C03p04620' => 'bna', 'C04p19870' => 'bna', 'C04p59670' => 'bna', 'C05p02460' => 'bna', 'C05p02470' => 'bna', 'C08p00980' => 'bna', 'C08p00990' => 'bna', 'C08p51030' => 'bna', 'C08p52360' => 'bna', 'C09p09120' => 'bna', 'CAN.G19.15' => 'can', 'CAN.G251.10' => 'can', 'CAN.G251.9' => 'can', 'CAN.G398.24' => 'can', 'CAN.G410.32' => 'can', 'CAN.G881.2' => 'can', 'CANSAT01G3025' => 'cansat', 'CANSAT78G1211' => 'cansat', 'CANSAT78G1218' => 'cansat', 'CANSAT78G1521' => 'cansat', 'CANSAT78G1670' => 'cansat', 'CARHR003600' => 'chi', 'CARHR003610' => 'chi', 'CARHR006290' => 'chi', 'CARHR006430' => 'chi', 'CARHR124110' => 'chi', 'CARHR203870' => 'chi', 'CARHR203880' => 'chi', 'CARHR203890' => 'chi', 'CARHR276880' => 'chi', 'Carub.0001s0346' => 'cru', 'Carub.0001s0347' => 'cru', 'Carub.0001s0607' => 'cru', 'Carub.0003s2768' => 'cru', 'Carub.0003s2769' => 'cru', 'Carub.0004s1178' => 'cru', 'Carub.0006s0806' => 'cru', 'Carub.0006s0807' => 'cru', 'Carub.0006s0808' => 'cru', 'Carub.0008s0501' => 'cru', 'Carub.0008s2379' => 'cru', 'Ca_08655_v3' => 'car', 'Ca_08922_v3' => 'car', 'Ca_08923_v3' => 'car', 'Ca_09119_v3' => 'car', 'Ca_09703_v3' => 'car', 'Ca_09705_v3' => 'car', 'Ca_09835_v3' => 'car', 'Ca_26403_v3' => 'car', 'Ca_30719_v3' => 'car', 'CBR_g17958' => 'cbr', 'CBR_g40516' => 'cbr', 'Cc00_g05350' => 'ccan', 'Cc01_g18690' => 'ccan', 'Cc03_g04830' => 'ccan', 'Cc03_g04850' => 'ccan', 'CDE02G4469' => 'cde', 'CDE06G0883' => 'cde', 'CDE06G1295' => 'cde', 'CDE06G1390' => 'cde', 'CDE07G0584' => 'cde', 'CDE07G1084' => 'cde', 'CDE08G1259' => 'cde', 'Cfa002341' => 'cfa', 'Cfa024337' => 'cfa', 'Ciclev10004749m.g' => 'ccl', 'Ciclev10006127m.g' => 'ccl', 'Ciclev10019720m.g' => 'ccl', 'Ciclev10022652m.g' => 'ccl', 'CiPaw.01G190400' => 'cil', 'CiPaw.01G190500' => 'cil', 'CiPaw.02G116400' => 'cil', 'CiPaw.02G116500' => 'cil', 'CiPaw.04G183000' => 'cil', 'CiPaw.04G183300' => 'cil', 'ClCG05G004610' => 'cla', 'ClCG05G004620' => 'cla', 'ClCG06G006730' => 'cla', 'ClCG06G006740' => 'cla', 'ClCG11G003690' => 'cla', 'COL.COLO4_08276' => 'col', 'COL.COLO4_08277' => 'col', 'COL.COLO4_15787' => 'col', 'COL.COLO4_15789' => 'col', 'Cpa.g.c44815' => 'cpa', 'Cpa.g.sc52.144' => 'cpa', 'Cpa.g.sc58.46' => 'cpa', 'Cpa.g.sc58.47' => 'cpa', 'Cre08.g360900' => 'cre', 'CsaV3_2G013030' => 'csa', 'CsaV3_2G013050' => 'csa', 'CsaV3_2G015620' => 'csa', 'CsaV3_3G012590' => 'csa', 'CsaV3_3G012600' => 'csa', 'CSS0001641' => 'camsi', 'CSS0008310' => 'camsi', 'CSS0013011' => 'camsi', 'CSS0017147' => 'camsi', 'CSS0022970' => 'camsi', 'CSS0025655' => 'camsi', 'CSS0028665' => 'camsi', 'CSS0029117' => 'camsi', 'CSS0032024' => 'camsi', 'CSS0039681' => 'camsi', 'CSS0046516' => 'camsi', 'CSS0050307' => 'camsi', 'DCAR_005871' => 'dca', 'DCAR_007342' => 'dca', 'DCAR_024228' => 'dca', 'DCAR_027277' => 'dca', 'DCAR_030718' => 'dca', 'Dinv20287' => 'din', 'Dinv22461' => 'din', 'Dinv22464' => 'din', 'Dinv29912' => 'din', 'Dinv29913' => 'din', 'Dinv34580' => 'din', 'Dinv34582' => 'din', 'Dinv44632' => 'din', 'Duzib052G0266' => 'dzi', 'Duzib133G0907' => 'dzi', 'Duzib133G1034' => 'dzi', 'Duzib138G0207' => 'dzi', 'Duzib138G0491' => 'dzi', 'Duzib151G0812' => 'dzi', 'Duzib151G1166' => 'dzi', 'Duzib168G0192' => 'dzi', 'Duzib211G0077' => 'dzi', 'Duzib212G0429' => 'dzi', 'Duzib212G0472' => 'dzi', 'ECA233G2617' => 'eca', 'ECA236G4188' => 'eca', 'ECA240G0936' => 'eca', 'ECA240G1129' => 'eca', 'ECA247G0623' => 'eca', 'EL10Ac5g10451' => 'bvu', 'EL10Ac5g10453' => 'bvu', 'EL10Ac5g10894' => 'bvu', 'Eucgr.H00192' => 'egr', 'Eucgr.H00193' => 'egr', 'Eucgr.H00194' => 'egr', 'Eucgr.J01562' => 'egr', 'Eucgr.K03301' => 'egr', 'FAN02G0632' => 'fan', 'FAN05G5378' => 'fan', 'FAN09G3247' => 'fan', 'FAN12G0435' => 'fan', 'FAN12G2426' => 'fan', 'FAN14G1707' => 'fan', 'FAN14G4725' => 'fan', 'FAN15G2071' => 'fan', 'FAN17G3065' => 'fan', 'FAN19G1376' => 'fan', 'FAN20G0354' => 'fan', 'FAN20G2429' => 'fan', 'FAN20G2658' => 'fan', 'FAN24G2343' => 'fan', 'FAN27G2362' => 'fan', 'FAN28G1765' => 'fan', 'FvH4_1g16020' => 'fve', 'FvH4_2g04890' => 'fve', 'FvH4_2g22270' => 'fve', 'FvH4_4g02630' => 'fve', 'FvH4_4g02640' => 'fve', 'FvH4_6g02650' => 'fve', 'Glyma.02G140600' => 'gma', 'Glyma.03G159900' => 'gma', 'Glyma.05G234800' => 'gma', 'Glyma.07G269600' => 'gma', 'Glyma.08G042300' => 'gma', 'Glyma.10G033500' => 'gma', 'Glyma.10G185200' => 'gma', 'Glyma.17G004300' => 'gma', 'Glyma.19G161900' => 'gma', 'Glyma.20G205100' => 'gma', 'Glyma.20G205200' => 'gma', 'Gohir.A01G139101' => 'ghi', 'Gohir.A02G035600' => 'ghi', 'Gohir.A02G117901' => 'ghi', 'Gohir.A07G210100' => 'ghi', 'Gohir.A07G210200' => 'ghi', 'Gohir.A08G061100' => 'ghi', 'Gohir.A09G223000' => 'ghi', 'Gohir.A09G223100' => 'ghi', 'Gohir.A10G113900' => 'ghi', 'Gohir.A10G114000' => 'ghi', 'Gohir.D02G042300' => 'ghi', 'Gohir.D07G216100' => 'ghi', 'Gohir.D07G216200' => 'ghi', 'Gohir.D08G070400' => 'ghi', 'Gohir.D09G225000' => 'ghi', 'Gohir.D09G225100' => 'ghi', 'Gohir.D10G152300' => 'ghi', 'Gohir.D10G153200' => 'ghi', 'Gohir.D11G133701' => 'ghi', 'Gorai.004G074100' => 'gra', 'Gorai.005G046800' => 'gra', 'Gorai.006G246500' => 'gra', 'Gorai.006G246600' => 'gra', 'Gorai.007G142900' => 'gra', 'Gorai.011G171000' => 'gra', 'Gorai.011G171100' => 'gra', 'Gorai.013G104300' => 'gra', 'Gorai.013G104400' => 'gra', 'GSVIVG01000754001' => 'vvi', 'GSVIVG01000756001' => 'vvi', 'GSVIVG01010903001' => 'vvi', 'GSVIVG01017623001' => 'vvi', 'GSVIVG01018113001' => 'vvi', 'GSVIVG01018116001' => 'vvi', 'GSVIVG01018118001' => 'vvi', 'HanXRQChr03g0076211' => 'han', 'HanXRQChr03g0092431' => 'han', 'HanXRQChr03g0092441' => 'han', 'HanXRQChr03g0092591' => 'han', 'HanXRQChr03g0092671' => 'han', 'HanXRQChr03g0092681' => 'han', 'HanXRQChr03g0092691' => 'han', 'HanXRQChr03g0092701' => 'han', 'HanXRQChr03g0092721' => 'han', 'HanXRQChr03g0092731' => 'han', 'HanXRQChr04g0113681' => 'han', 'HanXRQChr10g0281371' => 'han', 'HanXRQChr11g0337141' => 'han', 'HanXRQChr13g0424521' => 'han', 'HanXRQChr13g0424531' => 'han', 'HanXRQChr13g0424541' => 'han', 'HanXRQChr16g0498221' => 'han', 'Haze_04377' => 'cav', 'Haze_11298' => 'cav', 'Haze_24547' => 'cav', 'Haze_24550' => 'cav', 'Haze_26587' => 'cav', 'Hma1.2p1_0650F.1_g195410' => 'hma', 'Hma1.2p1_0893F.1_g233470' => 'hma', 'HPP92_006508' => 'vpl', 'HPP92_024780' => 'vpl', 'Hund02688' => 'sun', 'Hund09380' => 'sun', 'Hund09381' => 'sun', 'Hund09832' => 'sun', 'Hund09833' => 'sun', 'Hund11351' => 'sun', 'Hund11513' => 'sun', 'Lalb_Chr06g0162591' => 'lal', 'Lalb_Chr06g0162601' => 'lal', 'Lalb_Chr06g0169321' => 'lal', 'Lalb_Chr09g0330951' => 'lal', 'Lalb_Chr16g0387631' => 'lal', 'Lalb_Chr21g0306241' => 'lal', 'Lalb_Chr25g0290051' => 'lal', 'Lalb_Chr25g0290061' => 'lal', 'Lalb_Chr25g0290071' => 'lal', 'Lj1g0003876' => 'lja', 'Lj1P1207T36' => 'lonja', 'Lj2C1156G12' => 'lonja', 'Lj3A793G39' => 'lonja', 'Lj3C580G2' => 'lonja', 'Lj3C780G2' => 'lonja', 'Lj3C780T4' => 'lonja', 'Lj3C793G9' => 'lonja', 'Lj4g0012960' => 'lja', 'Lj5g0021252' => 'lja', 'Lj5g0021484' => 'lja', 'Lj5g0024528' => 'lja', 'Lj6A399T12' => 'lonja', 'Lj6A656G65' => 'lonja', 'Lsat_1_v5_gn_3_125500' => 'lsa', 'Lsat_1_v5_gn_3_125540' => 'lsa', 'Lsat_1_v5_gn_5_72701' => 'lsa', 'Lsat_1_v5_gn_8_91560' => 'lsa', 'Lsat_1_v5_gn_9_9640' => 'lsa', 'Manes.01G200600' => 'mes', 'Manes.01G200700' => 'mes', 'Manes.03G168900' => 'mes', 'Manes.03G169000' => 'mes', 'Manes.05G085801' => 'mes', 'Manes.05G086200' => 'mes', 'Manes.15G036700' => 'mes', 'Manes.15G036900' => 'mes', 'Mapoly0004s0172' => 'mpo', 'Mapoly0023s0001' => 'mpo', 'Mapoly0142s0012' => 'mpo', 'MBI01_g32854_MAGBIO' => 'mbi', 'MBI11_g24427_MAGBIO' => 'mbi', 'MBI11_g47319_MAGBIO' => 'mbi', 'MCO01G433' => 'mco', 'MD00G1187800' => 'mdo', 'MD04G1226500' => 'mdo', 'MD05G1203900' => 'mdo', 'MD10G1191100' => 'mdo', 'MD12G1243500' => 'mdo', 'MD13G1207000' => 'mdo', 'MD13G1207100' => 'mdo', 'MD16G1208600' => 'mdo', 'Medtr1g050352' => 'mtr', 'Medtr1g070385' => 'mtr', 'Medtr1g070450' => 'mtr', 'Medtr1g075200' => 'mtr', 'Medtr1g075250' => 'mtr', 'Medtr1g075260' => 'mtr', 'Medtr1g475250' => 'mtr', 'Medtr4g075450' => 'mtr', 'Medtr7g096300' => 'mtr', 'Medtr8g105110' => 'mtr', 'MELO3C006470.2' => 'cme', 'MELO3C006471.2' => 'cme', 'MELO3C020772.2' => 'cme', 'MELO3C026780.2' => 'cme', 'MELO3C026781.2' => 'cme', 'Migut.D00390' => 'egut', 'Migut.G00435' => 'egut', 'Migut.G00436' => 'egut', 'Migut.G00718' => 'egut', 'MSTRG.21891' => 'ama', 'MSTRG.26910' => 'ama', 'MSTRG.4099' => 'ama', 'MSTRG.9925' => 'ama', 'Nitab4.5_0000165g0010' => 'nta', 'Nitab4.5_0000209g0180' => 'nta', 'Nitab4.5_0000244g0440' => 'nta', 'Nitab4.5_0000525g0220' => 'nta', 'Nitab4.5_0001597g0020' => 'nta', 'Nitab4.5_0001878g0040' => 'nta', 'Nitab4.5_0001878g0060' => 'nta', 'Nitab4.5_0002838g0100' => 'nta', 'Nitab4.5_0002838g0120' => 'nta', 'Nitab4.5_0004798g0030' => 'nta', 'Nitab4.5_0005420g0010' => 'nta', 'Nitab4.5_0005507g0010' => 'nta', 'Nitab4.5_0005574g0020' => 'nta', 'Nitab4.5_0005838g0010' => 'nta', 'Nitab4.5_0010580g0020' => 'nta', 'Nn1g02599' => 'nnu', 'Nn1g02608' => 'nnu', 'Nn3g17742' => 'nnu', 'Nn3g19534' => 'nnu', 'Nn3g19535' => 'nnu', 'Oeu008790.1' => 'oeu', 'Oeu008792.1' => 'oeu', 'Oeu032590.1' => 'oeu', 'Oeu035349.1' => 'oeu', 'Oeu049791.1' => 'oeu', 'Os01g0774500' => 'osa', 'Os03g0628800' => 'osa', 'Os03g0798600' => 'osa', 'Os05g0508800' => 'osa', 'Peaxi162Scf00036g02018' => 'pax', 'Peaxi162Scf00578g00032' => 'pax', 'Peaxi162Scf00578g00317' => 'pax', 'Peaxi162Scf00785g00114' => 'pax', 'Peaxi162Scf00813g00119' => 'pax', 'Peaxi162Scf00906g00227' => 'pax', 'PGR004G0875' => 'pgr', 'PGR004G2424' => 'pgr', 'PGR031G1239' => 'pgr', 'PGR031G2474' => 'pgr', 'PGR044G0423' => 'pgr', 'PGSC0003DMG400001128' => 'stu', 'PGSC0003DMG400007336' => 'stu', 'PGSC0003DMG400016318' => 'stu', 'PGSC0003DMG400016319' => 'stu', 'PGSC0003DMG400018074' => 'stu', 'Phvul.001G157700' => 'pvu', 'Phvul.002G148550' => 'pvu', 'Phvul.002G320200' => 'pvu', 'Phvul.003G089200' => 'pvu', 'Phvul.007G126000' => 'pvu', 'Phvul.007G126100' => 'pvu', 'Phvul.007G178000' => 'pvu', 'Phvul.007G178200' => 'pvu', 'Potri.002G043000' => 'ptr', 'Potri.002G043200' => 'ptr', 'Potri.003G123750' => 'ptr', 'Potri.005G055401' => 'ptr', 'Potri.005G219700' => 'ptr', 'Potri.005G220000' => 'ptr', 'Potri.008G161901' => 'ptr', 'Potri.008G162000' => 'ptr', 'Potri.008G162400' => 'ptr', 'Potri.010G076900' => 'ptr', 'Pp3c12_9180' => 'ppa', 'Pp3c13_19770' => 'ppa', 'Pp3c14_22950' => 'ppa', 'Pp3c16_12160' => 'ppa', 'Pp3c27_7820' => 'ppa', 'Pp3c2_3490' => 'ppa', 'Pp3c3_23700' => 'ppa', 'Pp3c3_36520' => 'ppa', 'Pp3c4_15250' => 'ppa', 'PRCOL_00007002' => 'pco', 'Prupe.1G030600' => 'ppe', 'Prupe.1G030700' => 'ppe', 'Prupe.6G345200' => 'ppe', 'Prupe.8G230300' => 'ppe', 'Prupe.8G230500' => 'ppe', 'Psat3g059600' => 'psa', 'Psat5g200920' => 'psa', 'Psat6g056440' => 'psa', 'Psat6g057360' => 'psa', 'Psat6g134120' => 'psa', 'Psat6g134160' => 'psa', 'Psat7g008640' => 'psa', 'Psat7g185240' => 'psa', 'PSO017G1330' => 'pso', 'PSO063G6097' => 'pso', 'PSO170G0835' => 'pso', 'PSO170G2499' => 'pso', 'PSO210G5058' => 'pso', 'PSO210G6154' => 'pso', 'PSO585G0031' => 'pso', 'PSO832G0264' => 'pso', 'PSO832G4288' => 'pso', 'QL03p027355' => 'qlo', 'QL03p027430' => 'qlo', 'QL04p081380' => 'qlo', 'QL06p015642' => 'qlo', 'QL06p015650' => 'qlo', 'QL06p015686' => 'qlo', 'QL12p042927' => 'qlo', 'QL93p1863_0035' => 'qlo', 'RcHm_v2.0_Chr3g0450581' => 'rch', 'RcHm_v2.0_Chr4g0390371' => 'rch', 'RcHm_v2.0_Chr4g0390381' => 'rch', 'RcHm_v2.0_Chr4g0390491' => 'rch', 'RcHm_v2.0_Chr4g0390501' => 'rch', 'RcHm_v2.0_Chr6g0289231' => 'rch', 'Rhsim04G0190400' => 'rsi', 'Rhsim04G0190500' => 'rsi', 'Rhsim04G0190600' => 'rsi', 'Rhsim13G0031400' => 'rsi', 'Rhsim13G0165600' => 'rsi', 'RhsimUnG0114600' => 'rsi', 'RhsimUnG0114700' => 'rsi', 'Sabra02G0034800' => 'sbr', 'Sabra02G0035100' => 'sbr', 'Sabra05G0168600' => 'sbr', 'Sabra05G0168800' => 'sbr', 'Sabra08G0123700' => 'sbr', 'Sabra10G0031900' => 'sbr', 'Sabra13G0039000' => 'sbr', 'SalBow2G0782' => 'sbo', 'SalBow2G1403' => 'sbo', 'SalBow4G0074' => 'sbo', 'SalBow4G2635' => 'sbo', 'SalBow5G3010' => 'sbo', 'Sc05g0000870' => 'sci', 'Sc05g0000890' => 'sci', 'Sc13g0005000' => 'sci', 'Sc13g0005030' => 'sci', 'Sc19g0003790' => 'sci', 'Sc19g0003800' => 'sci', 'Sed0003467' => 'sed', 'Sed0009355' => 'sed', 'Sed0009894' => 'sed', 'Sed0011972' => 'sed', 'Sed0021483' => 'sed', 'Sed0021750' => 'sed', 'Sed0026279' => 'sed', 'SEGI_05312' => 'sgi', 'SEGI_10112' => 'sgi', 'SEGI_15835' => 'sgi', 'SEGI_30386' => 'sgi', 'SEGI_34122' => 'sgi', 'SEGI_35063' => 'sgi', 'SGA_v2.0_scaffold101G29794' => 'sas', 'SGA_v2.0_scaffold1G00573' => 'sas', 'SGA_v2.0_scaffold79G25637' => 'sas', 'SGA_v2.0_scaffold88G27283' => 'sas', 'SGA_v2.0_scaffold88G27285' => 'sas', 'SGA_v2.0_scaffold88G27331' => 'sas', 'SHI09937' => 'shi', 'SMO119G0302' => 'smo', 'SMO137G0231' => 'smo', 'SMO367G1151' => 'smo', 'Solyc02g082000.3' => 'sly', 'Solyc06g031670.3' => 'sly', 'Solyc06g053810.3' => 'sly', 'Solyc07g025457.1' => 'sly', 'Solyc08g059740.1' => 'sly', 'Solyc08g059750.3' => 'sly', 'Solyc09g083370.3' => 'sly', 'Solyc12g038950.3' => 'sly', 'Sopen02g026630' => 'spe', 'Sopen06g018930' => 'spe', 'Sopen06g018940' => 'spe', 'Sopen08g009460' => 'spe', 'Sopen09g032290' => 'spe', 'Sp1g03080' => 'spa', 'Sp1g03090' => 'spa', 'Sp1g05480' => 'spa', 'Sp2g07860' => 'spa', 'Sp2g08430' => 'spa', 'Sp2g08440' => 'spa', 'Sp2g26200' => 'spa', 'Sp4g13170' => 'spa', 'Sp6g33840' => 'spa', 'SpUn1204_0010' => 'spa', 'TAR365G0908' => 'tar', 'TAR381G1270' => 'tar', 'TAR381G1651' => 'tar', 'TAR625G1131' => 'tar', 'TAR633G0962' => 'tar', 'TAR633G1729' => 'tar', 'TAR633G1864' => 'tar', 'TAR636G0221' => 'tar', 'TAR636G0314' => 'tar', 'TAR636G3202' => 'tar', 'THA.LOC104800805' => 'tha', 'THA.LOC104801096' => 'tha', 'THA.LOC104801555' => 'tha', 'THA.LOC104808491' => 'tha', 'THA.LOC104808595' => 'tha', 'THA.LOC104815985' => 'tha', 'THA.LOC104822250' => 'tha', 'THA.LOC104826071' => 'tha', 'Thecc.01G265200' => 'tca', 'Thecc.01G265300' => 'tca', 'Thecc.01G265700' => 'tca', 'Thecc.03G109100' => 'tca', 'Thecc.04G245900' => 'tca', 'Thecc.04G246000' => 'tca', 'Thhalv10003334m.g' => 'esa', 'Thhalv10005508m.g' => 'esa', 'Thhalv10005643m.g' => 'esa', 'Thhalv10007316m.g' => 'esa', 'Thhalv10009006m.g' => 'esa', 'Thhalv10009309m.g' => 'esa', 'Thhalv10014917m.g' => 'esa', 'Thhalv10014919m.g' => 'esa', 'Thhalv10015393m.g' => 'esa', 'Thhalv10016515m.g' => 'esa', 'Thhalv10029242m.g' => 'esa', 'TPR.G16654' => 'tpr', 'TPR.G20589' => 'tpr', 'TPR.G23029' => 'tpr', 'TPR.G27731' => 'tpr', 'TPR.G28889' => 'tpr', 'TPR.G28899' => 'tpr', 'TPR.G30846' => 'tpr', 'TPR.G5452' => 'tpr', 'TPR.G5713' => 'tpr', 'TPR.G9046' => 'tpr', 'TPR.G9061' => 'tpr', 'TWI09G1075' => 'twi', 'TWI12G0806' => 'twi', 'TWI18G0108' => 'twi', 'TWI53G1361' => 'twi', 'TWI73G0185' => 'twi', 'TWI73G0427' => 'twi', 'unitig_37.g12001' => 'ugi', 'unitig_747.g21660' => 'ugi', 'unitig_748.g7232' => 'ugi', 'unitig_748.g7315' => 'ugi', 'unitig_85.g27262' => 'ugi', 'unitig_92.g28220' => 'ugi', 'vmacro02632' => 'vma', 'vmacro08410' => 'vma', 'vmacro08411' => 'vma', 'vmacro15407' => 'vma', 'VMungo0251G3619' => 'vmu', 'VMungo0720G1204' => 'vmu', 'VMungo0720G1918' => 'vmu', 'VMungo0720G2387' => 'vmu', 'VMungo0720G2961' => 'vmu', 'VMungo1215G2154' => 'vmu', 'VMungo1383G2411' => 'vmu', 'Zm00001eb051130' => 'zma', 'Zm00001eb116830' => 'zma', 'Zm00001eb116850' => 'zma', 'Zm00001eb151740' => 'zma', 'Zm00001eb292360' => 'zma', 'Zm00001eb301640' => 'zma' ), 'gf_id' => 'HOM05D000856', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000856' ), 'data_identifier' => 'HOM05D000856', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000856', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p00010' => 'bna', 'A03p04160' => 'bna', 'A03p17160' => 'bna', 'A04p23370' => 'bna', 'A05p14860' => 'bna', 'A08p37020' => 'bna', 'A09p08050' => 'bna', 'A09p66800' => 'bna', 'A09p67940' => 'bna', 'A10p02680' => 'bna', 'A10p05320' => 'bna', 'Aa31LG1G20560' => 'aar', 'Aa31LG1G20610' => 'aar', 'Aa31LG1G7810' => 'aar', 'Aa31LG5G3590' => 'aar', 'Aa31LG5G6140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3819' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4683' => 'aag', 'Actinidia04480' => 'ach', 'Actinidia05466' => 'ach', 'Actinidia08445' => 'ach', 'Actinidia21170' => 'ach', 'Actinidia24812' => 'ach', 'Actinidia24951' => 'ach', 'Actinidia40088' => 'ach', 'Ah.02g111660' => 'amhyb', 'Ah.11g048900' => 'amhyb', 'Ah.11g049910' => 'amhyb', 'AL1G13870' => 'aly', 'AL1G13880' => 'aly', 'AL1G16760' => 'aly', 'AL390U10020' => 'aly', 'AL4G25520' => 'aly', 'AL6G19890' => 'aly', 'AL6G19900' => 'aly', 'AL6G19910' => 'aly', 'AL8G40100' => 'aly', 'Aqoxy2G03562' => 'aox', 'Aqoxy5G00316' => 'aox', 'Aqoxy5G00926' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1628KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1H403S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2FU6SJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.882I6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8YRY2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YN1SN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AF70II' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZA8L1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F916KL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHRD8H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KTZ8QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S22EMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8M29T' => 'arhy', 'AT1G04270' => 'ath', 'AT1G04280' => 'ath', 'AT1G06750' => 'ath', 'AT1G33850' => 'ath', 'AT2G30630' => 'ath', 'AT5G09490' => 'ath', 'AT5G09500' => 'ath', 'AT5G09510' => 'ath', 'AT5G43640' => 'ath', 'AT5G63070' => 'ath', 'ATR0605G315' => 'atr', 'Atru.chr11.175' => 'acertr', 'Atru.chr11.653' => 'acertr', 'Atru.chr3.1616' => 'acertr', 'Atru.chr4.2230' => 'acertr', 'Atru.chr4.2232' => 'acertr', 'Atru.chr5.1598' => 'acertr', 'Atru.chr5.1600' => 'acertr', 'Atru.chr5.2188' => 'acertr', 'AUR62008326' => 'cqu', 'AUR62011922' => 'cqu', 'AUR62011924' => 'cqu', 'AUR62021771' => 'cqu', 'AUR62032237' => 'cqu', 'AUR62032240' => 'cqu', 'BcaB01g05572' => 'bca', 'BcaB02g10337' => 'bca', 'BcaB04g19944' => 'bca', 'BcaB05g21548' => 'bca', 'BcaB05g21549' => 'bca', 'BcaB05g23227' => 'bca', 'BcaB06g26256' => 'bca', 'BcaB06g26257' => 'bca', 'BcaB06g28379' => 'bca', 'BcaC02g11159' => 'bca', 'BcaC03g13258' => 'bca', 'BcaC03g13259' => 'bca', 'BcaC05g24456' => 'bca', 'BcaC05g24457' => 'bca', 'BcaC07g36922' => 'bca', 'BcaC07g36923' => 'bca', 'BcaC07g42050' => 'bca', 'BcaC07g42176' => 'bca', 'BcaC07g42195' => 'bca', 'BcaC07g42196' => 'bca', 'BcaNung06674' => 'bca', 'BolC2t06351H' => 'bol', 'BolC2t06352H' => 'bol', 'BolC3t12993H' => 'bol', 'BolC4t23525H' => 'bol', 'BolC4t27475H' => 'bol', 'BolC5t29025H' => 'bol', 'BolC5t29026H' => 'bol', 'BolC8t46898H' => 'bol', 'BolC8t46899H' => 'bol', 'BolC8t52630H' => 'bol', 'BolC8t52765H' => 'bol', 'BolC9t53824H' => 'bol', 'BraA03t09760Z' => 'bra', 'BraA03t10990Z' => 'bra', 'BraA05t20413Z' => 'bra', 'BraA08t35602Z' => 'bra', 'BraA09t36458Z' => 'bra', 'BraA09t42018Z' => 'bra', 'BraA09t42129Z' => 'bra', 'BraA10t42536Z' => 'bra', 'BraA10t42537Z' => 'bra', 'C01p10690' => 'bna', 'C02p03890' => 'bna', 'C02p03900' => 'bna', 'C03p04620' => 'bna', 'C04p19870' => 'bna', 'C04p59670' => 'bna', 'C05p02460' => 'bna', 'C05p02470' => 'bna', 'C08p00980' => 'bna', 'C08p00990' => 'bna', 'C08p51030' => 'bna', 'C08p52360' => 'bna', 'C09p09120' => 'bna', 'CAN.G19.15' => 'can', 'CAN.G251.10' => 'can', 'CAN.G251.9' => 'can', 'CAN.G398.24' => 'can', 'CAN.G410.32' => 'can', 'CAN.G881.2' => 'can', 'CANSAT01G3025' => 'cansat', 'CANSAT78G1211' => 'cansat', 'CANSAT78G1218' => 'cansat', 'CANSAT78G1521' => 'cansat', 'CANSAT78G1670' => 'cansat', 'CARHR003600' => 'chi', 'CARHR003610' => 'chi', 'CARHR006290' => 'chi', 'CARHR006430' => 'chi', 'CARHR124110' => 'chi', 'CARHR203870' => 'chi', 'CARHR203880' => 'chi', 'CARHR203890' => 'chi', 'CARHR276880' => 'chi', 'Carub.0001s0346' => 'cru', 'Carub.0001s0347' => 'cru', 'Carub.0001s0607' => 'cru', 'Carub.0003s2768' => 'cru', 'Carub.0003s2769' => 'cru', 'Carub.0004s1178' => 'cru', 'Carub.0006s0806' => 'cru', 'Carub.0006s0807' => 'cru', 'Carub.0006s0808' => 'cru', 'Carub.0008s0501' => 'cru', 'Carub.0008s2379' => 'cru', 'Ca_08655_v3' => 'car', 'Ca_08922_v3' => 'car', 'Ca_08923_v3' => 'car', 'Ca_09119_v3' => 'car', 'Ca_09703_v3' => 'car', 'Ca_09705_v3' => 'car', 'Ca_09835_v3' => 'car', 'Ca_26403_v3' => 'car', 'Ca_30719_v3' => 'car', 'CBR_g17958' => 'cbr', 'CBR_g40516' => 'cbr', 'Cc00_g05350' => 'ccan', 'Cc01_g18690' => 'ccan', 'Cc03_g04830' => 'ccan', 'Cc03_g04850' => 'ccan', 'CDE02G4469' => 'cde', 'CDE06G0883' => 'cde', 'CDE06G1295' => 'cde', 'CDE06G1390' => 'cde', 'CDE07G0584' => 'cde', 'CDE07G1084' => 'cde', 'CDE08G1259' => 'cde', 'Cfa002341' => 'cfa', 'Cfa024337' => 'cfa', 'Ciclev10004749m.g' => 'ccl', 'Ciclev10006127m.g' => 'ccl', 'Ciclev10019720m.g' => 'ccl', 'Ciclev10022652m.g' => 'ccl', 'CiPaw.01G190400' => 'cil', 'CiPaw.01G190500' => 'cil', 'CiPaw.02G116400' => 'cil', 'CiPaw.02G116500' => 'cil', 'CiPaw.04G183000' => 'cil', 'CiPaw.04G183300' => 'cil', 'ClCG05G004610' => 'cla', 'ClCG05G004620' => 'cla', 'ClCG06G006730' => 'cla', 'ClCG06G006740' => 'cla', 'ClCG11G003690' => 'cla', 'COL.COLO4_08276' => 'col', 'COL.COLO4_08277' => 'col', 'COL.COLO4_15787' => 'col', 'COL.COLO4_15789' => 'col', 'Cpa.g.c44815' => 'cpa', 'Cpa.g.sc52.144' => 'cpa', 'Cpa.g.sc58.46' => 'cpa', 'Cpa.g.sc58.47' => 'cpa', 'Cre08.g360900' => 'cre', 'CsaV3_2G013030' => 'csa', 'CsaV3_2G013050' => 'csa', 'CsaV3_2G015620' => 'csa', 'CsaV3_3G012590' => 'csa', 'CsaV3_3G012600' => 'csa', 'CSS0001641' => 'camsi', 'CSS0008310' => 'camsi', 'CSS0013011' => 'camsi', 'CSS0017147' => 'camsi', 'CSS0022970' => 'camsi', 'CSS0025655' => 'camsi', 'CSS0028665' => 'camsi', 'CSS0029117' => 'camsi', 'CSS0032024' => 'camsi', 'CSS0039681' => 'camsi', 'CSS0046516' => 'camsi', 'CSS0050307' => 'camsi', 'DCAR_005871' => 'dca', 'DCAR_007342' => 'dca', 'DCAR_024228' => 'dca', 'DCAR_027277' => 'dca', 'DCAR_030718' => 'dca', 'Dinv20287' => 'din', 'Dinv22461' => 'din', 'Dinv22464' => 'din', 'Dinv29912' => 'din', 'Dinv29913' => 'din', 'Dinv34580' => 'din', 'Dinv34582' => 'din', 'Dinv44632' => 'din', 'Duzib052G0266' => 'dzi', 'Duzib133G0907' => 'dzi', 'Duzib133G1034' => 'dzi', 'Duzib138G0207' => 'dzi', 'Duzib138G0491' => 'dzi', 'Duzib151G0812' => 'dzi', 'Duzib151G1166' => 'dzi', 'Duzib168G0192' => 'dzi', 'Duzib211G0077' => 'dzi', 'Duzib212G0429' => 'dzi', 'Duzib212G0472' => 'dzi', 'ECA233G2617' => 'eca', 'ECA236G4188' => 'eca', 'ECA240G0936' => 'eca', 'ECA240G1129' => 'eca', 'ECA247G0623' => 'eca', 'EL10Ac5g10451' => 'bvu', 'EL10Ac5g10453' => 'bvu', 'EL10Ac5g10894' => 'bvu', 'Eucgr.H00192' => 'egr', 'Eucgr.H00193' => 'egr', 'Eucgr.H00194' => 'egr', 'Eucgr.J01562' => 'egr', 'Eucgr.K03301' => 'egr', 'FAN02G0632' => 'fan', 'FAN05G5378' => 'fan', 'FAN09G3247' => 'fan', 'FAN12G0435' => 'fan', 'FAN12G2426' => 'fan', 'FAN14G1707' => 'fan', 'FAN14G4725' => 'fan', 'FAN15G2071' => 'fan', 'FAN17G3065' => 'fan', 'FAN19G1376' => 'fan', 'FAN20G0354' => 'fan', 'FAN20G2429' => 'fan', 'FAN20G2658' => 'fan', 'FAN24G2343' => 'fan', 'FAN27G2362' => 'fan', 'FAN28G1765' => 'fan', 'FvH4_1g16020' => 'fve', 'FvH4_2g04890' => 'fve', 'FvH4_2g22270' => 'fve', 'FvH4_4g02630' => 'fve', 'FvH4_4g02640' => 'fve', 'FvH4_6g02650' => 'fve', 'Glyma.02G140600' => 'gma', 'Glyma.03G159900' => 'gma', 'Glyma.05G234800' => 'gma', 'Glyma.07G269600' => 'gma', 'Glyma.08G042300' => 'gma', 'Glyma.10G033500' => 'gma', 'Glyma.10G185200' => 'gma', 'Glyma.17G004300' => 'gma', 'Glyma.19G161900' => 'gma', 'Glyma.20G205100' => 'gma', 'Glyma.20G205200' => 'gma', 'Gohir.A01G139101' => 'ghi', 'Gohir.A02G035600' => 'ghi', 'Gohir.A02G117901' => 'ghi', 'Gohir.A07G210100' => 'ghi', 'Gohir.A07G210200' => 'ghi', 'Gohir.A08G061100' => 'ghi', 'Gohir.A09G223000' => 'ghi', 'Gohir.A09G223100' => 'ghi', 'Gohir.A10G113900' => 'ghi', 'Gohir.A10G114000' => 'ghi', 'Gohir.D02G042300' => 'ghi', 'Gohir.D07G216100' => 'ghi', 'Gohir.D07G216200' => 'ghi', 'Gohir.D08G070400' => 'ghi', 'Gohir.D09G225000' => 'ghi', 'Gohir.D09G225100' => 'ghi', 'Gohir.D10G152300' => 'ghi', 'Gohir.D10G153200' => 'ghi', 'Gohir.D11G133701' => 'ghi', 'Gorai.004G074100' => 'gra', 'Gorai.005G046800' => 'gra', 'Gorai.006G246500' => 'gra', 'Gorai.006G246600' => 'gra', 'Gorai.007G142900' => 'gra', 'Gorai.011G171000' => 'gra', 'Gorai.011G171100' => 'gra', 'Gorai.013G104300' => 'gra', 'Gorai.013G104400' => 'gra', 'GSVIVG01000754001' => 'vvi', 'GSVIVG01000756001' => 'vvi', 'GSVIVG01010903001' => 'vvi', 'GSVIVG01017623001' => 'vvi', 'GSVIVG01018113001' => 'vvi', 'GSVIVG01018116001' => 'vvi', 'GSVIVG01018118001' => 'vvi', 'HanXRQChr03g0076211' => 'han', 'HanXRQChr03g0092431' => 'han', 'HanXRQChr03g0092441' => 'han', 'HanXRQChr03g0092591' => 'han', 'HanXRQChr03g0092671' => 'han', 'HanXRQChr03g0092681' => 'han', 'HanXRQChr03g0092691' => 'han', 'HanXRQChr03g0092701' => 'han', 'HanXRQChr03g0092721' => 'han', 'HanXRQChr03g0092731' => 'han', 'HanXRQChr04g0113681' => 'han', 'HanXRQChr10g0281371' => 'han', 'HanXRQChr11g0337141' => 'han', 'HanXRQChr13g0424521' => 'han', 'HanXRQChr13g0424531' => 'han', 'HanXRQChr13g0424541' => 'han', 'HanXRQChr16g0498221' => 'han', 'Haze_04377' => 'cav', 'Haze_11298' => 'cav', 'Haze_24547' => 'cav', 'Haze_24550' => 'cav', 'Haze_26587' => 'cav', 'Hma1.2p1_0650F.1_g195410' => 'hma', 'Hma1.2p1_0893F.1_g233470' => 'hma', 'HPP92_006508' => 'vpl', 'HPP92_024780' => 'vpl', 'Hund02688' => 'sun', 'Hund09380' => 'sun', 'Hund09381' => 'sun', 'Hund09832' => 'sun', 'Hund09833' => 'sun', 'Hund11351' => 'sun', 'Hund11513' => 'sun', 'Lalb_Chr06g0162591' => 'lal', 'Lalb_Chr06g0162601' => 'lal', 'Lalb_Chr06g0169321' => 'lal', 'Lalb_Chr09g0330951' => 'lal', 'Lalb_Chr16g0387631' => 'lal', 'Lalb_Chr21g0306241' => 'lal', 'Lalb_Chr25g0290051' => 'lal', 'Lalb_Chr25g0290061' => 'lal', 'Lalb_Chr25g0290071' => 'lal', 'Lj1g0003876' => 'lja', 'Lj1P1207T36' => 'lonja', 'Lj2C1156G12' => 'lonja', 'Lj3A793G39' => 'lonja', 'Lj3C580G2' => 'lonja', 'Lj3C780G2' => 'lonja', 'Lj3C780T4' => 'lonja', 'Lj3C793G9' => 'lonja', 'Lj4g0012960' => 'lja', 'Lj5g0021252' => 'lja', 'Lj5g0021484' => 'lja', 'Lj5g0024528' => 'lja', 'Lj6A399T12' => 'lonja', 'Lj6A656G65' => 'lonja', 'Lsat_1_v5_gn_3_125500' => 'lsa', 'Lsat_1_v5_gn_3_125540' => 'lsa', 'Lsat_1_v5_gn_5_72701' => 'lsa', 'Lsat_1_v5_gn_8_91560' => 'lsa', 'Lsat_1_v5_gn_9_9640' => 'lsa', 'Manes.01G200600' => 'mes', 'Manes.01G200700' => 'mes', 'Manes.03G168900' => 'mes', 'Manes.03G169000' => 'mes', 'Manes.05G085801' => 'mes', 'Manes.05G086200' => 'mes', 'Manes.15G036700' => 'mes', 'Manes.15G036900' => 'mes', 'Mapoly0004s0172' => 'mpo', 'Mapoly0023s0001' => 'mpo', 'Mapoly0142s0012' => 'mpo', 'MBI01_g32854_MAGBIO' => 'mbi', 'MBI11_g24427_MAGBIO' => 'mbi', 'MBI11_g47319_MAGBIO' => 'mbi', 'MCO01G433' => 'mco', 'MD00G1187800' => 'mdo', 'MD04G1226500' => 'mdo', 'MD05G1203900' => 'mdo', 'MD10G1191100' => 'mdo', 'MD12G1243500' => 'mdo', 'MD13G1207000' => 'mdo', 'MD13G1207100' => 'mdo', 'MD16G1208600' => 'mdo', 'Medtr1g050352' => 'mtr', 'Medtr1g070385' => 'mtr', 'Medtr1g070450' => 'mtr', 'Medtr1g075200' => 'mtr', 'Medtr1g075250' => 'mtr', 'Medtr1g075260' => 'mtr', 'Medtr1g475250' => 'mtr', 'Medtr4g075450' => 'mtr', 'Medtr7g096300' => 'mtr', 'Medtr8g105110' => 'mtr', 'MELO3C006470.2' => 'cme', 'MELO3C006471.2' => 'cme', 'MELO3C020772.2' => 'cme', 'MELO3C026780.2' => 'cme', 'MELO3C026781.2' => 'cme', 'Migut.D00390' => 'egut', 'Migut.G00435' => 'egut', 'Migut.G00436' => 'egut', 'Migut.G00718' => 'egut', 'MSTRG.21891' => 'ama', 'MSTRG.26910' => 'ama', 'MSTRG.4099' => 'ama', 'MSTRG.9925' => 'ama', 'Nitab4.5_0000165g0010' => 'nta', 'Nitab4.5_0000209g0180' => 'nta', 'Nitab4.5_0000244g0440' => 'nta', 'Nitab4.5_0000525g0220' => 'nta', 'Nitab4.5_0001597g0020' => 'nta', 'Nitab4.5_0001878g0040' => 'nta', 'Nitab4.5_0001878g0060' => 'nta', 'Nitab4.5_0002838g0100' => 'nta', 'Nitab4.5_0002838g0120' => 'nta', 'Nitab4.5_0004798g0030' => 'nta', 'Nitab4.5_0005420g0010' => 'nta', 'Nitab4.5_0005507g0010' => 'nta', 'Nitab4.5_0005574g0020' => 'nta', 'Nitab4.5_0005838g0010' => 'nta', 'Nitab4.5_0010580g0020' => 'nta', 'Nn1g02599' => 'nnu', 'Nn1g02608' => 'nnu', 'Nn3g17742' => 'nnu', 'Nn3g19534' => 'nnu', 'Nn3g19535' => 'nnu', 'Oeu008790.1' => 'oeu', 'Oeu008792.1' => 'oeu', 'Oeu032590.1' => 'oeu', 'Oeu035349.1' => 'oeu', 'Oeu049791.1' => 'oeu', 'Os01g0774500' => 'osa', 'Os03g0628800' => 'osa', 'Os03g0798600' => 'osa', 'Os05g0508800' => 'osa', 'Peaxi162Scf00036g02018' => 'pax', 'Peaxi162Scf00578g00032' => 'pax', 'Peaxi162Scf00578g00317' => 'pax', 'Peaxi162Scf00785g00114' => 'pax', 'Peaxi162Scf00813g00119' => 'pax', 'Peaxi162Scf00906g00227' => 'pax', 'PGR004G0875' => 'pgr', 'PGR004G2424' => 'pgr', 'PGR031G1239' => 'pgr', 'PGR031G2474' => 'pgr', 'PGR044G0423' => 'pgr', 'PGSC0003DMG400001128' => 'stu', 'PGSC0003DMG400007336' => 'stu', 'PGSC0003DMG400016318' => 'stu', 'PGSC0003DMG400016319' => 'stu', 'PGSC0003DMG400018074' => 'stu', 'Phvul.001G157700' => 'pvu', 'Phvul.002G148550' => 'pvu', 'Phvul.002G320200' => 'pvu', 'Phvul.003G089200' => 'pvu', 'Phvul.007G126000' => 'pvu', 'Phvul.007G126100' => 'pvu', 'Phvul.007G178000' => 'pvu', 'Phvul.007G178200' => 'pvu', 'Potri.002G043000' => 'ptr', 'Potri.002G043200' => 'ptr', 'Potri.003G123750' => 'ptr', 'Potri.005G055401' => 'ptr', 'Potri.005G219700' => 'ptr', 'Potri.005G220000' => 'ptr', 'Potri.008G161901' => 'ptr', 'Potri.008G162000' => 'ptr', 'Potri.008G162400' => 'ptr', 'Potri.010G076900' => 'ptr', 'Pp3c12_9180' => 'ppa', 'Pp3c13_19770' => 'ppa', 'Pp3c14_22950' => 'ppa', 'Pp3c16_12160' => 'ppa', 'Pp3c27_7820' => 'ppa', 'Pp3c2_3490' => 'ppa', 'Pp3c3_23700' => 'ppa', 'Pp3c3_36520' => 'ppa', 'Pp3c4_15250' => 'ppa', 'PRCOL_00007002' => 'pco', 'Prupe.1G030600' => 'ppe', 'Prupe.1G030700' => 'ppe', 'Prupe.6G345200' => 'ppe', 'Prupe.8G230300' => 'ppe', 'Prupe.8G230500' => 'ppe', 'Psat3g059600' => 'psa', 'Psat5g200920' => 'psa', 'Psat6g056440' => 'psa', 'Psat6g057360' => 'psa', 'Psat6g134120' => 'psa', 'Psat6g134160' => 'psa', 'Psat7g008640' => 'psa', 'Psat7g185240' => 'psa', 'PSO017G1330' => 'pso', 'PSO063G6097' => 'pso', 'PSO170G0835' => 'pso', 'PSO170G2499' => 'pso', 'PSO210G5058' => 'pso', 'PSO210G6154' => 'pso', 'PSO585G0031' => 'pso', 'PSO832G0264' => 'pso', 'PSO832G4288' => 'pso', 'QL03p027355' => 'qlo', 'QL03p027430' => 'qlo', 'QL04p081380' => 'qlo', 'QL06p015642' => 'qlo', 'QL06p015650' => 'qlo', 'QL06p015686' => 'qlo', 'QL12p042927' => 'qlo', 'QL93p1863_0035' => 'qlo', 'RcHm_v2.0_Chr3g0450581' => 'rch', 'RcHm_v2.0_Chr4g0390371' => 'rch', 'RcHm_v2.0_Chr4g0390381' => 'rch', 'RcHm_v2.0_Chr4g0390491' => 'rch', 'RcHm_v2.0_Chr4g0390501' => 'rch', 'RcHm_v2.0_Chr6g0289231' => 'rch', 'Rhsim04G0190400' => 'rsi', 'Rhsim04G0190500' => 'rsi', 'Rhsim04G0190600' => 'rsi', 'Rhsim13G0031400' => 'rsi', 'Rhsim13G0165600' => 'rsi', 'RhsimUnG0114600' => 'rsi', 'RhsimUnG0114700' => 'rsi', 'Sabra02G0034800' => 'sbr', 'Sabra02G0035100' => 'sbr', 'Sabra05G0168600' => 'sbr', 'Sabra05G0168800' => 'sbr', 'Sabra08G0123700' => 'sbr', 'Sabra10G0031900' => 'sbr', 'Sabra13G0039000' => 'sbr', 'SalBow2G0782' => 'sbo', 'SalBow2G1403' => 'sbo', 'SalBow4G0074' => 'sbo', 'SalBow4G2635' => 'sbo', 'SalBow5G3010' => 'sbo', 'Sc05g0000870' => 'sci', 'Sc05g0000890' => 'sci', 'Sc13g0005000' => 'sci', 'Sc13g0005030' => 'sci', 'Sc19g0003790' => 'sci', 'Sc19g0003800' => 'sci', 'Sed0003467' => 'sed', 'Sed0009355' => 'sed', 'Sed0009894' => 'sed', 'Sed0011972' => 'sed', 'Sed0021483' => 'sed', 'Sed0021750' => 'sed', 'Sed0026279' => 'sed', 'SEGI_05312' => 'sgi', 'SEGI_10112' => 'sgi', 'SEGI_15835' => 'sgi', 'SEGI_30386' => 'sgi', 'SEGI_34122' => 'sgi', 'SEGI_35063' => 'sgi', 'SGA_v2.0_scaffold101G29794' => 'sas', 'SGA_v2.0_scaffold1G00573' => 'sas', 'SGA_v2.0_scaffold79G25637' => 'sas', 'SGA_v2.0_scaffold88G27283' => 'sas', 'SGA_v2.0_scaffold88G27285' => 'sas', 'SGA_v2.0_scaffold88G27331' => 'sas', 'SHI09937' => 'shi', 'SMO119G0302' => 'smo', 'SMO137G0231' => 'smo', 'SMO367G1151' => 'smo', 'Solyc02g082000.3' => 'sly', 'Solyc06g031670.3' => 'sly', 'Solyc06g053810.3' => 'sly', 'Solyc07g025457.1' => 'sly', 'Solyc08g059740.1' => 'sly', 'Solyc08g059750.3' => 'sly', 'Solyc09g083370.3' => 'sly', 'Solyc12g038950.3' => 'sly', 'Sopen02g026630' => 'spe', 'Sopen06g018930' => 'spe', 'Sopen06g018940' => 'spe', 'Sopen08g009460' => 'spe', 'Sopen09g032290' => 'spe', 'Sp1g03080' => 'spa', 'Sp1g03090' => 'spa', 'Sp1g05480' => 'spa', 'Sp2g07860' => 'spa', 'Sp2g08430' => 'spa', 'Sp2g08440' => 'spa', 'Sp2g26200' => 'spa', 'Sp4g13170' => 'spa', 'Sp6g33840' => 'spa', 'SpUn1204_0010' => 'spa', 'TAR365G0908' => 'tar', 'TAR381G1270' => 'tar', 'TAR381G1651' => 'tar', 'TAR625G1131' => 'tar', 'TAR633G0962' => 'tar', 'TAR633G1729' => 'tar', 'TAR633G1864' => 'tar', 'TAR636G0221' => 'tar', 'TAR636G0314' => 'tar', 'TAR636G3202' => 'tar', 'THA.LOC104800805' => 'tha', 'THA.LOC104801096' => 'tha', 'THA.LOC104801555' => 'tha', 'THA.LOC104808491' => 'tha', 'THA.LOC104808595' => 'tha', 'THA.LOC104815985' => 'tha', 'THA.LOC104822250' => 'tha', 'THA.LOC104826071' => 'tha', 'Thecc.01G265200' => 'tca', 'Thecc.01G265300' => 'tca', 'Thecc.01G265700' => 'tca', 'Thecc.03G109100' => 'tca', 'Thecc.04G245900' => 'tca', 'Thecc.04G246000' => 'tca', 'Thhalv10003334m.g' => 'esa', 'Thhalv10005508m.g' => 'esa', 'Thhalv10005643m.g' => 'esa', 'Thhalv10007316m.g' => 'esa', 'Thhalv10009006m.g' => 'esa', 'Thhalv10009309m.g' => 'esa', 'Thhalv10014917m.g' => 'esa', 'Thhalv10014919m.g' => 'esa', 'Thhalv10015393m.g' => 'esa', 'Thhalv10016515m.g' => 'esa', 'Thhalv10029242m.g' => 'esa', 'TPR.G16654' => 'tpr', 'TPR.G20589' => 'tpr', 'TPR.G23029' => 'tpr', 'TPR.G27731' => 'tpr', 'TPR.G28889' => 'tpr', 'TPR.G28899' => 'tpr', 'TPR.G30846' => 'tpr', 'TPR.G5452' => 'tpr', 'TPR.G5713' => 'tpr', 'TPR.G9046' => 'tpr', 'TPR.G9061' => 'tpr', 'TWI09G1075' => 'twi', 'TWI12G0806' => 'twi', 'TWI18G0108' => 'twi', 'TWI53G1361' => 'twi', 'TWI73G0185' => 'twi', 'TWI73G0427' => 'twi', 'unitig_37.g12001' => 'ugi', 'unitig_747.g21660' => 'ugi', 'unitig_748.g7232' => 'ugi', 'unitig_748.g7315' => 'ugi', 'unitig_85.g27262' => 'ugi', 'unitig_92.g28220' => 'ugi', 'vmacro02632' => 'vma', 'vmacro08410' => 'vma', 'vmacro08411' => 'vma', 'vmacro15407' => 'vma', 'VMungo0251G3619' => 'vmu', 'VMungo0720G1204' => 'vmu', 'VMungo0720G1918' => 'vmu', 'VMungo0720G2387' => 'vmu', 'VMungo0720G2961' => 'vmu', 'VMungo1215G2154' => 'vmu', 'VMungo1383G2411' => 'vmu', 'Zm00001eb051130' => 'zma', 'Zm00001eb116830' => 'zma', 'Zm00001eb116850' => 'zma', 'Zm00001eb151740' => 'zma', 'Zm00001eb292360' => 'zma', 'Zm00001eb301640' => 'zma' ) $gf_id = 'HOM05D000856' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000856' ) $data_identifier = 'HOM05D000856' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 13, 'ath' => (int) 10, 'atr' => (int) 1, 'acertr' => (int) 8, 'cqu' => (int) 6, 'bca' => (int) 21, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 11, 'car' => (int) 9, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 8, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 5, 'fan' => (int) 16, 'fve' => (int) 6, 'gma' => (int) 11, 'ghi' => (int) 19, 'gra' => (int) 9, 'vvi' => (int) 7, 'han' => (int) 17, 'cav' => (int) 5, 'hma' => (int) 2, 'vpl' => (int) 2, 'sun' => (int) 7, 'lal' => (int) 9, 'lja' => (int) 5, 'lonja' => (int) 9, 'lsa' => (int) 5, 'mes' => (int) 8, 'mpo' => (int) 3, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 10, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 15, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 9, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 9, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 6, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 5, 'spa' => (int) 10, 'tar' => (int) 10, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 11, 'tpr' => (int) 11, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 4, 'vmu' => (int) 7, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb301640' $species_info = array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ) $local_species = 'psa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000856', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p00010' => 'bna', 'A03p04160' => 'bna', 'A03p17160' => 'bna', 'A04p23370' => 'bna', 'A05p14860' => 'bna', 'A08p37020' => 'bna', 'A09p08050' => 'bna', 'A09p66800' => 'bna', 'A09p67940' => 'bna', 'A10p02680' => 'bna', 'A10p05320' => 'bna', 'Aa31LG1G20560' => 'aar', 'Aa31LG1G20610' => 'aar', 'Aa31LG1G7810' => 'aar', 'Aa31LG5G3590' => 'aar', 'Aa31LG5G6140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3819' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4683' => 'aag', 'Actinidia04480' => 'ach', 'Actinidia05466' => 'ach', 'Actinidia08445' => 'ach', 'Actinidia21170' => 'ach', 'Actinidia24812' => 'ach', 'Actinidia24951' => 'ach', 'Actinidia40088' => 'ach', 'Ah.02g111660' => 'amhyb', 'Ah.11g048900' => 'amhyb', 'Ah.11g049910' => 'amhyb', 'AL1G13870' => 'aly', 'AL1G13880' => 'aly', 'AL1G16760' => 'aly', 'AL390U10020' => 'aly', 'AL4G25520' => 'aly', 'AL6G19890' => 'aly', 'AL6G19900' => 'aly', 'AL6G19910' => 'aly', 'AL8G40100' => 'aly', 'Aqoxy2G03562' => 'aox', 'Aqoxy5G00316' => 'aox', 'Aqoxy5G00926' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1628KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1H403S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2FU6SJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.882I6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8YRY2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YN1SN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AF70II' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZA8L1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F916KL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHRD8H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KTZ8QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S22EMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8M29T' => 'arhy', 'AT1G04270' => 'ath', 'AT1G04280' => 'ath', 'AT1G06750' => 'ath', 'AT1G33850' => 'ath', 'AT2G30630' => 'ath', 'AT5G09490' => 'ath', 'AT5G09500' => 'ath', 'AT5G09510' => 'ath', 'AT5G43640' => 'ath', 'AT5G63070' => 'ath', 'ATR0605G315' => 'atr', 'Atru.chr11.175' => 'acertr', 'Atru.chr11.653' => 'acertr', 'Atru.chr3.1616' => 'acertr', 'Atru.chr4.2230' => 'acertr', 'Atru.chr4.2232' => 'acertr', 'Atru.chr5.1598' => 'acertr', 'Atru.chr5.1600' => 'acertr', 'Atru.chr5.2188' => 'acertr', 'AUR62008326' => 'cqu', 'AUR62011922' => 'cqu', 'AUR62011924' => 'cqu', 'AUR62021771' => 'cqu', 'AUR62032237' => 'cqu', 'AUR62032240' => 'cqu', 'BcaB01g05572' => 'bca', 'BcaB02g10337' => 'bca', 'BcaB04g19944' => 'bca', 'BcaB05g21548' => 'bca', 'BcaB05g21549' => 'bca', 'BcaB05g23227' => 'bca', 'BcaB06g26256' => 'bca', 'BcaB06g26257' => 'bca', 'BcaB06g28379' => 'bca', 'BcaC02g11159' => 'bca', 'BcaC03g13258' => 'bca', 'BcaC03g13259' => 'bca', 'BcaC05g24456' => 'bca', 'BcaC05g24457' => 'bca', 'BcaC07g36922' => 'bca', 'BcaC07g36923' => 'bca', 'BcaC07g42050' => 'bca', 'BcaC07g42176' => 'bca', 'BcaC07g42195' => 'bca', 'BcaC07g42196' => 'bca', 'BcaNung06674' => 'bca', 'BolC2t06351H' => 'bol', 'BolC2t06352H' => 'bol', 'BolC3t12993H' => 'bol', 'BolC4t23525H' => 'bol', 'BolC4t27475H' => 'bol', 'BolC5t29025H' => 'bol', 'BolC5t29026H' => 'bol', 'BolC8t46898H' => 'bol', 'BolC8t46899H' => 'bol', 'BolC8t52630H' => 'bol', 'BolC8t52765H' => 'bol', 'BolC9t53824H' => 'bol', 'BraA03t09760Z' => 'bra', 'BraA03t10990Z' => 'bra', 'BraA05t20413Z' => 'bra', 'BraA08t35602Z' => 'bra', 'BraA09t36458Z' => 'bra', 'BraA09t42018Z' => 'bra', 'BraA09t42129Z' => 'bra', 'BraA10t42536Z' => 'bra', 'BraA10t42537Z' => 'bra', 'C01p10690' => 'bna', 'C02p03890' => 'bna', 'C02p03900' => 'bna', 'C03p04620' => 'bna', 'C04p19870' => 'bna', 'C04p59670' => 'bna', 'C05p02460' => 'bna', 'C05p02470' => 'bna', 'C08p00980' => 'bna', 'C08p00990' => 'bna', 'C08p51030' => 'bna', 'C08p52360' => 'bna', 'C09p09120' => 'bna', 'CAN.G19.15' => 'can', 'CAN.G251.10' => 'can', 'CAN.G251.9' => 'can', 'CAN.G398.24' => 'can', 'CAN.G410.32' => 'can', 'CAN.G881.2' => 'can', 'CANSAT01G3025' => 'cansat', 'CANSAT78G1211' => 'cansat', 'CANSAT78G1218' => 'cansat', 'CANSAT78G1521' => 'cansat', 'CANSAT78G1670' => 'cansat', 'CARHR003600' => 'chi', 'CARHR003610' => 'chi', 'CARHR006290' => 'chi', 'CARHR006430' => 'chi', 'CARHR124110' => 'chi', 'CARHR203870' => 'chi', 'CARHR203880' => 'chi', 'CARHR203890' => 'chi', 'CARHR276880' => 'chi', 'Carub.0001s0346' => 'cru', 'Carub.0001s0347' => 'cru', 'Carub.0001s0607' => 'cru', 'Carub.0003s2768' => 'cru', 'Carub.0003s2769' => 'cru', 'Carub.0004s1178' => 'cru', 'Carub.0006s0806' => 'cru', 'Carub.0006s0807' => 'cru', 'Carub.0006s0808' => 'cru', 'Carub.0008s0501' => 'cru', 'Carub.0008s2379' => 'cru', 'Ca_08655_v3' => 'car', 'Ca_08922_v3' => 'car', 'Ca_08923_v3' => 'car', 'Ca_09119_v3' => 'car', 'Ca_09703_v3' => 'car', 'Ca_09705_v3' => 'car', 'Ca_09835_v3' => 'car', 'Ca_26403_v3' => 'car', 'Ca_30719_v3' => 'car', 'CBR_g17958' => 'cbr', 'CBR_g40516' => 'cbr', 'Cc00_g05350' => 'ccan', 'Cc01_g18690' => 'ccan', 'Cc03_g04830' => 'ccan', 'Cc03_g04850' => 'ccan', 'CDE02G4469' => 'cde', 'CDE06G0883' => 'cde', 'CDE06G1295' => 'cde', 'CDE06G1390' => 'cde', 'CDE07G0584' => 'cde', 'CDE07G1084' => 'cde', 'CDE08G1259' => 'cde', 'Cfa002341' => 'cfa', 'Cfa024337' => 'cfa', 'Ciclev10004749m.g' => 'ccl', 'Ciclev10006127m.g' => 'ccl', 'Ciclev10019720m.g' => 'ccl', 'Ciclev10022652m.g' => 'ccl', 'CiPaw.01G190400' => 'cil', 'CiPaw.01G190500' => 'cil', 'CiPaw.02G116400' => 'cil', 'CiPaw.02G116500' => 'cil', 'CiPaw.04G183000' => 'cil', 'CiPaw.04G183300' => 'cil', 'ClCG05G004610' => 'cla', 'ClCG05G004620' => 'cla', 'ClCG06G006730' => 'cla', 'ClCG06G006740' => 'cla', 'ClCG11G003690' => 'cla', 'COL.COLO4_08276' => 'col', 'COL.COLO4_08277' => 'col', 'COL.COLO4_15787' => 'col', 'COL.COLO4_15789' => 'col', 'Cpa.g.c44815' => 'cpa', 'Cpa.g.sc52.144' => 'cpa', 'Cpa.g.sc58.46' => 'cpa', 'Cpa.g.sc58.47' => 'cpa', 'Cre08.g360900' => 'cre', 'CsaV3_2G013030' => 'csa', 'CsaV3_2G013050' => 'csa', 'CsaV3_2G015620' => 'csa', 'CsaV3_3G012590' => 'csa', 'CsaV3_3G012600' => 'csa', 'CSS0001641' => 'camsi', 'CSS0008310' => 'camsi', 'CSS0013011' => 'camsi', 'CSS0017147' => 'camsi', 'CSS0022970' => 'camsi', 'CSS0025655' => 'camsi', 'CSS0028665' => 'camsi', 'CSS0029117' => 'camsi', 'CSS0032024' => 'camsi', 'CSS0039681' => 'camsi', 'CSS0046516' => 'camsi', 'CSS0050307' => 'camsi', 'DCAR_005871' => 'dca', 'DCAR_007342' => 'dca', 'DCAR_024228' => 'dca', 'DCAR_027277' => 'dca', 'DCAR_030718' => 'dca', 'Dinv20287' => 'din', 'Dinv22461' => 'din', 'Dinv22464' => 'din', 'Dinv29912' => 'din', 'Dinv29913' => 'din', 'Dinv34580' => 'din', 'Dinv34582' => 'din', 'Dinv44632' => 'din', 'Duzib052G0266' => 'dzi', 'Duzib133G0907' => 'dzi', 'Duzib133G1034' => 'dzi', 'Duzib138G0207' => 'dzi', 'Duzib138G0491' => 'dzi', 'Duzib151G0812' => 'dzi', 'Duzib151G1166' => 'dzi', 'Duzib168G0192' => 'dzi', 'Duzib211G0077' => 'dzi', 'Duzib212G0429' => 'dzi', 'Duzib212G0472' => 'dzi', 'ECA233G2617' => 'eca', 'ECA236G4188' => 'eca', 'ECA240G0936' => 'eca', 'ECA240G1129' => 'eca', 'ECA247G0623' => 'eca', 'EL10Ac5g10451' => 'bvu', 'EL10Ac5g10453' => 'bvu', 'EL10Ac5g10894' => 'bvu', 'Eucgr.H00192' => 'egr', 'Eucgr.H00193' => 'egr', 'Eucgr.H00194' => 'egr', 'Eucgr.J01562' => 'egr', 'Eucgr.K03301' => 'egr', 'FAN02G0632' => 'fan', 'FAN05G5378' => 'fan', 'FAN09G3247' => 'fan', 'FAN12G0435' => 'fan', 'FAN12G2426' => 'fan', 'FAN14G1707' => 'fan', 'FAN14G4725' => 'fan', 'FAN15G2071' => 'fan', 'FAN17G3065' => 'fan', 'FAN19G1376' => 'fan', 'FAN20G0354' => 'fan', 'FAN20G2429' => 'fan', 'FAN20G2658' => 'fan', 'FAN24G2343' => 'fan', 'FAN27G2362' => 'fan', 'FAN28G1765' => 'fan', 'FvH4_1g16020' => 'fve', 'FvH4_2g04890' => 'fve', 'FvH4_2g22270' => 'fve', 'FvH4_4g02630' => 'fve', 'FvH4_4g02640' => 'fve', 'FvH4_6g02650' => 'fve', 'Glyma.02G140600' => 'gma', 'Glyma.03G159900' => 'gma', 'Glyma.05G234800' => 'gma', 'Glyma.07G269600' => 'gma', 'Glyma.08G042300' => 'gma', 'Glyma.10G033500' => 'gma', 'Glyma.10G185200' => 'gma', 'Glyma.17G004300' => 'gma', 'Glyma.19G161900' => 'gma', 'Glyma.20G205100' => 'gma', 'Glyma.20G205200' => 'gma', 'Gohir.A01G139101' => 'ghi', 'Gohir.A02G035600' => 'ghi', 'Gohir.A02G117901' => 'ghi', 'Gohir.A07G210100' => 'ghi', 'Gohir.A07G210200' => 'ghi', 'Gohir.A08G061100' => 'ghi', 'Gohir.A09G223000' => 'ghi', 'Gohir.A09G223100' => 'ghi', 'Gohir.A10G113900' => 'ghi', 'Gohir.A10G114000' => 'ghi', 'Gohir.D02G042300' => 'ghi', 'Gohir.D07G216100' => 'ghi', 'Gohir.D07G216200' => 'ghi', 'Gohir.D08G070400' => 'ghi', 'Gohir.D09G225000' => 'ghi', 'Gohir.D09G225100' => 'ghi', 'Gohir.D10G152300' => 'ghi', 'Gohir.D10G153200' => 'ghi', 'Gohir.D11G133701' => 'ghi', 'Gorai.004G074100' => 'gra', 'Gorai.005G046800' => 'gra', 'Gorai.006G246500' => 'gra', 'Gorai.006G246600' => 'gra', 'Gorai.007G142900' => 'gra', 'Gorai.011G171000' => 'gra', 'Gorai.011G171100' => 'gra', 'Gorai.013G104300' => 'gra', 'Gorai.013G104400' => 'gra', 'GSVIVG01000754001' => 'vvi', 'GSVIVG01000756001' => 'vvi', 'GSVIVG01010903001' => 'vvi', 'GSVIVG01017623001' => 'vvi', 'GSVIVG01018113001' => 'vvi', 'GSVIVG01018116001' => 'vvi', 'GSVIVG01018118001' => 'vvi', 'HanXRQChr03g0076211' => 'han', 'HanXRQChr03g0092431' => 'han', 'HanXRQChr03g0092441' => 'han', 'HanXRQChr03g0092591' => 'han', 'HanXRQChr03g0092671' => 'han', 'HanXRQChr03g0092681' => 'han', 'HanXRQChr03g0092691' => 'han', 'HanXRQChr03g0092701' => 'han', 'HanXRQChr03g0092721' => 'han', 'HanXRQChr03g0092731' => 'han', 'HanXRQChr04g0113681' => 'han', 'HanXRQChr10g0281371' => 'han', 'HanXRQChr11g0337141' => 'han', 'HanXRQChr13g0424521' => 'han', 'HanXRQChr13g0424531' => 'han', 'HanXRQChr13g0424541' => 'han', 'HanXRQChr16g0498221' => 'han', 'Haze_04377' => 'cav', 'Haze_11298' => 'cav', 'Haze_24547' => 'cav', 'Haze_24550' => 'cav', 'Haze_26587' => 'cav', 'Hma1.2p1_0650F.1_g195410' => 'hma', 'Hma1.2p1_0893F.1_g233470' => 'hma', 'HPP92_006508' => 'vpl', 'HPP92_024780' => 'vpl', 'Hund02688' => 'sun', 'Hund09380' => 'sun', 'Hund09381' => 'sun', 'Hund09832' => 'sun', 'Hund09833' => 'sun', 'Hund11351' => 'sun', 'Hund11513' => 'sun', 'Lalb_Chr06g0162591' => 'lal', 'Lalb_Chr06g0162601' => 'lal', 'Lalb_Chr06g0169321' => 'lal', 'Lalb_Chr09g0330951' => 'lal', 'Lalb_Chr16g0387631' => 'lal', 'Lalb_Chr21g0306241' => 'lal', 'Lalb_Chr25g0290051' => 'lal', 'Lalb_Chr25g0290061' => 'lal', 'Lalb_Chr25g0290071' => 'lal', 'Lj1g0003876' => 'lja', 'Lj1P1207T36' => 'lonja', 'Lj2C1156G12' => 'lonja', 'Lj3A793G39' => 'lonja', 'Lj3C580G2' => 'lonja', 'Lj3C780G2' => 'lonja', 'Lj3C780T4' => 'lonja', 'Lj3C793G9' => 'lonja', 'Lj4g0012960' => 'lja', 'Lj5g0021252' => 'lja', 'Lj5g0021484' => 'lja', 'Lj5g0024528' => 'lja', 'Lj6A399T12' => 'lonja', 'Lj6A656G65' => 'lonja', 'Lsat_1_v5_gn_3_125500' => 'lsa', 'Lsat_1_v5_gn_3_125540' => 'lsa', 'Lsat_1_v5_gn_5_72701' => 'lsa', 'Lsat_1_v5_gn_8_91560' => 'lsa', 'Lsat_1_v5_gn_9_9640' => 'lsa', 'Manes.01G200600' => 'mes', 'Manes.01G200700' => 'mes', 'Manes.03G168900' => 'mes', 'Manes.03G169000' => 'mes', 'Manes.05G085801' => 'mes', 'Manes.05G086200' => 'mes', 'Manes.15G036700' => 'mes', 'Manes.15G036900' => 'mes', 'Mapoly0004s0172' => 'mpo', 'Mapoly0023s0001' => 'mpo', 'Mapoly0142s0012' => 'mpo', 'MBI01_g32854_MAGBIO' => 'mbi', 'MBI11_g24427_MAGBIO' => 'mbi', 'MBI11_g47319_MAGBIO' => 'mbi', 'MCO01G433' => 'mco', 'MD00G1187800' => 'mdo', 'MD04G1226500' => 'mdo', 'MD05G1203900' => 'mdo', 'MD10G1191100' => 'mdo', 'MD12G1243500' => 'mdo', 'MD13G1207000' => 'mdo', 'MD13G1207100' => 'mdo', 'MD16G1208600' => 'mdo', 'Medtr1g050352' => 'mtr', 'Medtr1g070385' => 'mtr', 'Medtr1g070450' => 'mtr', 'Medtr1g075200' => 'mtr', 'Medtr1g075250' => 'mtr', 'Medtr1g075260' => 'mtr', 'Medtr1g475250' => 'mtr', 'Medtr4g075450' => 'mtr', 'Medtr7g096300' => 'mtr', 'Medtr8g105110' => 'mtr', 'MELO3C006470.2' => 'cme', 'MELO3C006471.2' => 'cme', 'MELO3C020772.2' => 'cme', 'MELO3C026780.2' => 'cme', 'MELO3C026781.2' => 'cme', 'Migut.D00390' => 'egut', 'Migut.G00435' => 'egut', 'Migut.G00436' => 'egut', 'Migut.G00718' => 'egut', 'MSTRG.21891' => 'ama', 'MSTRG.26910' => 'ama', 'MSTRG.4099' => 'ama', 'MSTRG.9925' => 'ama', 'Nitab4.5_0000165g0010' => 'nta', 'Nitab4.5_0000209g0180' => 'nta', 'Nitab4.5_0000244g0440' => 'nta', 'Nitab4.5_0000525g0220' => 'nta', 'Nitab4.5_0001597g0020' => 'nta', 'Nitab4.5_0001878g0040' => 'nta', 'Nitab4.5_0001878g0060' => 'nta', 'Nitab4.5_0002838g0100' => 'nta', 'Nitab4.5_0002838g0120' => 'nta', 'Nitab4.5_0004798g0030' => 'nta', 'Nitab4.5_0005420g0010' => 'nta', 'Nitab4.5_0005507g0010' => 'nta', 'Nitab4.5_0005574g0020' => 'nta', 'Nitab4.5_0005838g0010' => 'nta', 'Nitab4.5_0010580g0020' => 'nta', 'Nn1g02599' => 'nnu', 'Nn1g02608' => 'nnu', 'Nn3g17742' => 'nnu', 'Nn3g19534' => 'nnu', 'Nn3g19535' => 'nnu', 'Oeu008790.1' => 'oeu', 'Oeu008792.1' => 'oeu', 'Oeu032590.1' => 'oeu', 'Oeu035349.1' => 'oeu', 'Oeu049791.1' => 'oeu', 'Os01g0774500' => 'osa', 'Os03g0628800' => 'osa', 'Os03g0798600' => 'osa', 'Os05g0508800' => 'osa', 'Peaxi162Scf00036g02018' => 'pax', 'Peaxi162Scf00578g00032' => 'pax', 'Peaxi162Scf00578g00317' => 'pax', 'Peaxi162Scf00785g00114' => 'pax', 'Peaxi162Scf00813g00119' => 'pax', 'Peaxi162Scf00906g00227' => 'pax', 'PGR004G0875' => 'pgr', 'PGR004G2424' => 'pgr', 'PGR031G1239' => 'pgr', 'PGR031G2474' => 'pgr', 'PGR044G0423' => 'pgr', 'PGSC0003DMG400001128' => 'stu', 'PGSC0003DMG400007336' => 'stu', 'PGSC0003DMG400016318' => 'stu', 'PGSC0003DMG400016319' => 'stu', 'PGSC0003DMG400018074' => 'stu', 'Phvul.001G157700' => 'pvu', 'Phvul.002G148550' => 'pvu', 'Phvul.002G320200' => 'pvu', 'Phvul.003G089200' => 'pvu', 'Phvul.007G126000' => 'pvu', 'Phvul.007G126100' => 'pvu', 'Phvul.007G178000' => 'pvu', 'Phvul.007G178200' => 'pvu', 'Potri.002G043000' => 'ptr', 'Potri.002G043200' => 'ptr', 'Potri.003G123750' => 'ptr', 'Potri.005G055401' => 'ptr', 'Potri.005G219700' => 'ptr', 'Potri.005G220000' => 'ptr', 'Potri.008G161901' => 'ptr', 'Potri.008G162000' => 'ptr', 'Potri.008G162400' => 'ptr', 'Potri.010G076900' => 'ptr', 'Pp3c12_9180' => 'ppa', 'Pp3c13_19770' => 'ppa', 'Pp3c14_22950' => 'ppa', 'Pp3c16_12160' => 'ppa', 'Pp3c27_7820' => 'ppa', 'Pp3c2_3490' => 'ppa', 'Pp3c3_23700' => 'ppa', 'Pp3c3_36520' => 'ppa', 'Pp3c4_15250' => 'ppa', 'PRCOL_00007002' => 'pco', 'Prupe.1G030600' => 'ppe', 'Prupe.1G030700' => 'ppe', 'Prupe.6G345200' => 'ppe', 'Prupe.8G230300' => 'ppe', 'Prupe.8G230500' => 'ppe', 'Psat3g059600' => 'psa', 'Psat5g200920' => 'psa', 'Psat6g056440' => 'psa', 'Psat6g057360' => 'psa', 'Psat6g134120' => 'psa', 'Psat6g134160' => 'psa', 'Psat7g008640' => 'psa', 'Psat7g185240' => 'psa', 'PSO017G1330' => 'pso', 'PSO063G6097' => 'pso', 'PSO170G0835' => 'pso', 'PSO170G2499' => 'pso', 'PSO210G5058' => 'pso', 'PSO210G6154' => 'pso', 'PSO585G0031' => 'pso', 'PSO832G0264' => 'pso', 'PSO832G4288' => 'pso', 'QL03p027355' => 'qlo', 'QL03p027430' => 'qlo', 'QL04p081380' => 'qlo', 'QL06p015642' => 'qlo', 'QL06p015650' => 'qlo', 'QL06p015686' => 'qlo', 'QL12p042927' => 'qlo', 'QL93p1863_0035' => 'qlo', 'RcHm_v2.0_Chr3g0450581' => 'rch', 'RcHm_v2.0_Chr4g0390371' => 'rch', 'RcHm_v2.0_Chr4g0390381' => 'rch', 'RcHm_v2.0_Chr4g0390491' => 'rch', 'RcHm_v2.0_Chr4g0390501' => 'rch', 'RcHm_v2.0_Chr6g0289231' => 'rch', 'Rhsim04G0190400' => 'rsi', 'Rhsim04G0190500' => 'rsi', 'Rhsim04G0190600' => 'rsi', 'Rhsim13G0031400' => 'rsi', 'Rhsim13G0165600' => 'rsi', 'RhsimUnG0114600' => 'rsi', 'RhsimUnG0114700' => 'rsi', 'Sabra02G0034800' => 'sbr', 'Sabra02G0035100' => 'sbr', 'Sabra05G0168600' => 'sbr', 'Sabra05G0168800' => 'sbr', 'Sabra08G0123700' => 'sbr', 'Sabra10G0031900' => 'sbr', 'Sabra13G0039000' => 'sbr', 'SalBow2G0782' => 'sbo', 'SalBow2G1403' => 'sbo', 'SalBow4G0074' => 'sbo', 'SalBow4G2635' => 'sbo', 'SalBow5G3010' => 'sbo', 'Sc05g0000870' => 'sci', 'Sc05g0000890' => 'sci', 'Sc13g0005000' => 'sci', 'Sc13g0005030' => 'sci', 'Sc19g0003790' => 'sci', 'Sc19g0003800' => 'sci', 'Sed0003467' => 'sed', 'Sed0009355' => 'sed', 'Sed0009894' => 'sed', 'Sed0011972' => 'sed', 'Sed0021483' => 'sed', 'Sed0021750' => 'sed', 'Sed0026279' => 'sed', 'SEGI_05312' => 'sgi', 'SEGI_10112' => 'sgi', 'SEGI_15835' => 'sgi', 'SEGI_30386' => 'sgi', 'SEGI_34122' => 'sgi', 'SEGI_35063' => 'sgi', 'SGA_v2.0_scaffold101G29794' => 'sas', 'SGA_v2.0_scaffold1G00573' => 'sas', 'SGA_v2.0_scaffold79G25637' => 'sas', 'SGA_v2.0_scaffold88G27283' => 'sas', 'SGA_v2.0_scaffold88G27285' => 'sas', 'SGA_v2.0_scaffold88G27331' => 'sas', 'SHI09937' => 'shi', 'SMO119G0302' => 'smo', 'SMO137G0231' => 'smo', 'SMO367G1151' => 'smo', 'Solyc02g082000.3' => 'sly', 'Solyc06g031670.3' => 'sly', 'Solyc06g053810.3' => 'sly', 'Solyc07g025457.1' => 'sly', 'Solyc08g059740.1' => 'sly', 'Solyc08g059750.3' => 'sly', 'Solyc09g083370.3' => 'sly', 'Solyc12g038950.3' => 'sly', 'Sopen02g026630' => 'spe', 'Sopen06g018930' => 'spe', 'Sopen06g018940' => 'spe', 'Sopen08g009460' => 'spe', 'Sopen09g032290' => 'spe', 'Sp1g03080' => 'spa', 'Sp1g03090' => 'spa', 'Sp1g05480' => 'spa', 'Sp2g07860' => 'spa', 'Sp2g08430' => 'spa', 'Sp2g08440' => 'spa', 'Sp2g26200' => 'spa', 'Sp4g13170' => 'spa', 'Sp6g33840' => 'spa', 'SpUn1204_0010' => 'spa', 'TAR365G0908' => 'tar', 'TAR381G1270' => 'tar', 'TAR381G1651' => 'tar', 'TAR625G1131' => 'tar', 'TAR633G0962' => 'tar', 'TAR633G1729' => 'tar', 'TAR633G1864' => 'tar', 'TAR636G0221' => 'tar', 'TAR636G0314' => 'tar', 'TAR636G3202' => 'tar', 'THA.LOC104800805' => 'tha', 'THA.LOC104801096' => 'tha', 'THA.LOC104801555' => 'tha', 'THA.LOC104808491' => 'tha', 'THA.LOC104808595' => 'tha', 'THA.LOC104815985' => 'tha', 'THA.LOC104822250' => 'tha', 'THA.LOC104826071' => 'tha', 'Thecc.01G265200' => 'tca', 'Thecc.01G265300' => 'tca', 'Thecc.01G265700' => 'tca', 'Thecc.03G109100' => 'tca', 'Thecc.04G245900' => 'tca', 'Thecc.04G246000' => 'tca', 'Thhalv10003334m.g' => 'esa', 'Thhalv10005508m.g' => 'esa', 'Thhalv10005643m.g' => 'esa', 'Thhalv10007316m.g' => 'esa', 'Thhalv10009006m.g' => 'esa', 'Thhalv10009309m.g' => 'esa', 'Thhalv10014917m.g' => 'esa', 'Thhalv10014919m.g' => 'esa', 'Thhalv10015393m.g' => 'esa', 'Thhalv10016515m.g' => 'esa', 'Thhalv10029242m.g' => 'esa', 'TPR.G16654' => 'tpr', 'TPR.G20589' => 'tpr', 'TPR.G23029' => 'tpr', 'TPR.G27731' => 'tpr', 'TPR.G28889' => 'tpr', 'TPR.G28899' => 'tpr', 'TPR.G30846' => 'tpr', 'TPR.G5452' => 'tpr', 'TPR.G5713' => 'tpr', 'TPR.G9046' => 'tpr', 'TPR.G9061' => 'tpr', 'TWI09G1075' => 'twi', 'TWI12G0806' => 'twi', 'TWI18G0108' => 'twi', 'TWI53G1361' => 'twi', 'TWI73G0185' => 'twi', 'TWI73G0427' => 'twi', 'unitig_37.g12001' => 'ugi', 'unitig_747.g21660' => 'ugi', 'unitig_748.g7232' => 'ugi', 'unitig_748.g7315' => 'ugi', 'unitig_85.g27262' => 'ugi', 'unitig_92.g28220' => 'ugi', 'vmacro02632' => 'vma', 'vmacro08410' => 'vma', 'vmacro08411' => 'vma', 'vmacro15407' => 'vma', 'VMungo0251G3619' => 'vmu', 'VMungo0720G1204' => 'vmu', 'VMungo0720G1918' => 'vmu', 'VMungo0720G2387' => 'vmu', 'VMungo0720G2961' => 'vmu', 'VMungo1215G2154' => 'vmu', 'VMungo1383G2411' => 'vmu', 'Zm00001eb051130' => 'zma', 'Zm00001eb116830' => 'zma', 'Zm00001eb116850' => 'zma', 'Zm00001eb151740' => 'zma', 'Zm00001eb292360' => 'zma', 'Zm00001eb301640' => 'zma' ), 'gf_id' => 'HOM05D000856', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000856' ), 'data_identifier' => 'HOM05D000856', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000856', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p00010' => 'bna', 'A03p04160' => 'bna', 'A03p17160' => 'bna', 'A04p23370' => 'bna', 'A05p14860' => 'bna', 'A08p37020' => 'bna', 'A09p08050' => 'bna', 'A09p66800' => 'bna', 'A09p67940' => 'bna', 'A10p02680' => 'bna', 'A10p05320' => 'bna', 'Aa31LG1G20560' => 'aar', 'Aa31LG1G20610' => 'aar', 'Aa31LG1G7810' => 'aar', 'Aa31LG5G3590' => 'aar', 'Aa31LG5G6140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3819' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4683' => 'aag', 'Actinidia04480' => 'ach', 'Actinidia05466' => 'ach', 'Actinidia08445' => 'ach', 'Actinidia21170' => 'ach', 'Actinidia24812' => 'ach', 'Actinidia24951' => 'ach', 'Actinidia40088' => 'ach', 'Ah.02g111660' => 'amhyb', 'Ah.11g048900' => 'amhyb', 'Ah.11g049910' => 'amhyb', 'AL1G13870' => 'aly', 'AL1G13880' => 'aly', 'AL1G16760' => 'aly', 'AL390U10020' => 'aly', 'AL4G25520' => 'aly', 'AL6G19890' => 'aly', 'AL6G19900' => 'aly', 'AL6G19910' => 'aly', 'AL8G40100' => 'aly', 'Aqoxy2G03562' => 'aox', 'Aqoxy5G00316' => 'aox', 'Aqoxy5G00926' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1628KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1H403S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2FU6SJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.882I6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8YRY2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YN1SN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AF70II' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZA8L1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F916KL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHRD8H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KTZ8QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S22EMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8M29T' => 'arhy', 'AT1G04270' => 'ath', 'AT1G04280' => 'ath', 'AT1G06750' => 'ath', 'AT1G33850' => 'ath', 'AT2G30630' => 'ath', 'AT5G09490' => 'ath', 'AT5G09500' => 'ath', 'AT5G09510' => 'ath', 'AT5G43640' => 'ath', 'AT5G63070' => 'ath', 'ATR0605G315' => 'atr', 'Atru.chr11.175' => 'acertr', 'Atru.chr11.653' => 'acertr', 'Atru.chr3.1616' => 'acertr', 'Atru.chr4.2230' => 'acertr', 'Atru.chr4.2232' => 'acertr', 'Atru.chr5.1598' => 'acertr', 'Atru.chr5.1600' => 'acertr', 'Atru.chr5.2188' => 'acertr', 'AUR62008326' => 'cqu', 'AUR62011922' => 'cqu', 'AUR62011924' => 'cqu', 'AUR62021771' => 'cqu', 'AUR62032237' => 'cqu', 'AUR62032240' => 'cqu', 'BcaB01g05572' => 'bca', 'BcaB02g10337' => 'bca', 'BcaB04g19944' => 'bca', 'BcaB05g21548' => 'bca', 'BcaB05g21549' => 'bca', 'BcaB05g23227' => 'bca', 'BcaB06g26256' => 'bca', 'BcaB06g26257' => 'bca', 'BcaB06g28379' => 'bca', 'BcaC02g11159' => 'bca', 'BcaC03g13258' => 'bca', 'BcaC03g13259' => 'bca', 'BcaC05g24456' => 'bca', 'BcaC05g24457' => 'bca', 'BcaC07g36922' => 'bca', 'BcaC07g36923' => 'bca', 'BcaC07g42050' => 'bca', 'BcaC07g42176' => 'bca', 'BcaC07g42195' => 'bca', 'BcaC07g42196' => 'bca', 'BcaNung06674' => 'bca', 'BolC2t06351H' => 'bol', 'BolC2t06352H' => 'bol', 'BolC3t12993H' => 'bol', 'BolC4t23525H' => 'bol', 'BolC4t27475H' => 'bol', 'BolC5t29025H' => 'bol', 'BolC5t29026H' => 'bol', 'BolC8t46898H' => 'bol', 'BolC8t46899H' => 'bol', 'BolC8t52630H' => 'bol', 'BolC8t52765H' => 'bol', 'BolC9t53824H' => 'bol', 'BraA03t09760Z' => 'bra', 'BraA03t10990Z' => 'bra', 'BraA05t20413Z' => 'bra', 'BraA08t35602Z' => 'bra', 'BraA09t36458Z' => 'bra', 'BraA09t42018Z' => 'bra', 'BraA09t42129Z' => 'bra', 'BraA10t42536Z' => 'bra', 'BraA10t42537Z' => 'bra', 'C01p10690' => 'bna', 'C02p03890' => 'bna', 'C02p03900' => 'bna', 'C03p04620' => 'bna', 'C04p19870' => 'bna', 'C04p59670' => 'bna', 'C05p02460' => 'bna', 'C05p02470' => 'bna', 'C08p00980' => 'bna', 'C08p00990' => 'bna', 'C08p51030' => 'bna', 'C08p52360' => 'bna', 'C09p09120' => 'bna', 'CAN.G19.15' => 'can', 'CAN.G251.10' => 'can', 'CAN.G251.9' => 'can', 'CAN.G398.24' => 'can', 'CAN.G410.32' => 'can', 'CAN.G881.2' => 'can', 'CANSAT01G3025' => 'cansat', 'CANSAT78G1211' => 'cansat', 'CANSAT78G1218' => 'cansat', 'CANSAT78G1521' => 'cansat', 'CANSAT78G1670' => 'cansat', 'CARHR003600' => 'chi', 'CARHR003610' => 'chi', 'CARHR006290' => 'chi', 'CARHR006430' => 'chi', 'CARHR124110' => 'chi', 'CARHR203870' => 'chi', 'CARHR203880' => 'chi', 'CARHR203890' => 'chi', 'CARHR276880' => 'chi', 'Carub.0001s0346' => 'cru', 'Carub.0001s0347' => 'cru', 'Carub.0001s0607' => 'cru', 'Carub.0003s2768' => 'cru', 'Carub.0003s2769' => 'cru', 'Carub.0004s1178' => 'cru', 'Carub.0006s0806' => 'cru', 'Carub.0006s0807' => 'cru', 'Carub.0006s0808' => 'cru', 'Carub.0008s0501' => 'cru', 'Carub.0008s2379' => 'cru', 'Ca_08655_v3' => 'car', 'Ca_08922_v3' => 'car', 'Ca_08923_v3' => 'car', 'Ca_09119_v3' => 'car', 'Ca_09703_v3' => 'car', 'Ca_09705_v3' => 'car', 'Ca_09835_v3' => 'car', 'Ca_26403_v3' => 'car', 'Ca_30719_v3' => 'car', 'CBR_g17958' => 'cbr', 'CBR_g40516' => 'cbr', 'Cc00_g05350' => 'ccan', 'Cc01_g18690' => 'ccan', 'Cc03_g04830' => 'ccan', 'Cc03_g04850' => 'ccan', 'CDE02G4469' => 'cde', 'CDE06G0883' => 'cde', 'CDE06G1295' => 'cde', 'CDE06G1390' => 'cde', 'CDE07G0584' => 'cde', 'CDE07G1084' => 'cde', 'CDE08G1259' => 'cde', 'Cfa002341' => 'cfa', 'Cfa024337' => 'cfa', 'Ciclev10004749m.g' => 'ccl', 'Ciclev10006127m.g' => 'ccl', 'Ciclev10019720m.g' => 'ccl', 'Ciclev10022652m.g' => 'ccl', 'CiPaw.01G190400' => 'cil', 'CiPaw.01G190500' => 'cil', 'CiPaw.02G116400' => 'cil', 'CiPaw.02G116500' => 'cil', 'CiPaw.04G183000' => 'cil', 'CiPaw.04G183300' => 'cil', 'ClCG05G004610' => 'cla', 'ClCG05G004620' => 'cla', 'ClCG06G006730' => 'cla', 'ClCG06G006740' => 'cla', 'ClCG11G003690' => 'cla', 'COL.COLO4_08276' => 'col', 'COL.COLO4_08277' => 'col', 'COL.COLO4_15787' => 'col', 'COL.COLO4_15789' => 'col', 'Cpa.g.c44815' => 'cpa', 'Cpa.g.sc52.144' => 'cpa', 'Cpa.g.sc58.46' => 'cpa', 'Cpa.g.sc58.47' => 'cpa', 'Cre08.g360900' => 'cre', 'CsaV3_2G013030' => 'csa', 'CsaV3_2G013050' => 'csa', 'CsaV3_2G015620' => 'csa', 'CsaV3_3G012590' => 'csa', 'CsaV3_3G012600' => 'csa', 'CSS0001641' => 'camsi', 'CSS0008310' => 'camsi', 'CSS0013011' => 'camsi', 'CSS0017147' => 'camsi', 'CSS0022970' => 'camsi', 'CSS0025655' => 'camsi', 'CSS0028665' => 'camsi', 'CSS0029117' => 'camsi', 'CSS0032024' => 'camsi', 'CSS0039681' => 'camsi', 'CSS0046516' => 'camsi', 'CSS0050307' => 'camsi', 'DCAR_005871' => 'dca', 'DCAR_007342' => 'dca', 'DCAR_024228' => 'dca', 'DCAR_027277' => 'dca', 'DCAR_030718' => 'dca', 'Dinv20287' => 'din', 'Dinv22461' => 'din', 'Dinv22464' => 'din', 'Dinv29912' => 'din', 'Dinv29913' => 'din', 'Dinv34580' => 'din', 'Dinv34582' => 'din', 'Dinv44632' => 'din', 'Duzib052G0266' => 'dzi', 'Duzib133G0907' => 'dzi', 'Duzib133G1034' => 'dzi', 'Duzib138G0207' => 'dzi', 'Duzib138G0491' => 'dzi', 'Duzib151G0812' => 'dzi', 'Duzib151G1166' => 'dzi', 'Duzib168G0192' => 'dzi', 'Duzib211G0077' => 'dzi', 'Duzib212G0429' => 'dzi', 'Duzib212G0472' => 'dzi', 'ECA233G2617' => 'eca', 'ECA236G4188' => 'eca', 'ECA240G0936' => 'eca', 'ECA240G1129' => 'eca', 'ECA247G0623' => 'eca', 'EL10Ac5g10451' => 'bvu', 'EL10Ac5g10453' => 'bvu', 'EL10Ac5g10894' => 'bvu', 'Eucgr.H00192' => 'egr', 'Eucgr.H00193' => 'egr', 'Eucgr.H00194' => 'egr', 'Eucgr.J01562' => 'egr', 'Eucgr.K03301' => 'egr', 'FAN02G0632' => 'fan', 'FAN05G5378' => 'fan', 'FAN09G3247' => 'fan', 'FAN12G0435' => 'fan', 'FAN12G2426' => 'fan', 'FAN14G1707' => 'fan', 'FAN14G4725' => 'fan', 'FAN15G2071' => 'fan', 'FAN17G3065' => 'fan', 'FAN19G1376' => 'fan', 'FAN20G0354' => 'fan', 'FAN20G2429' => 'fan', 'FAN20G2658' => 'fan', 'FAN24G2343' => 'fan', 'FAN27G2362' => 'fan', 'FAN28G1765' => 'fan', 'FvH4_1g16020' => 'fve', 'FvH4_2g04890' => 'fve', 'FvH4_2g22270' => 'fve', 'FvH4_4g02630' => 'fve', 'FvH4_4g02640' => 'fve', 'FvH4_6g02650' => 'fve', 'Glyma.02G140600' => 'gma', 'Glyma.03G159900' => 'gma', 'Glyma.05G234800' => 'gma', 'Glyma.07G269600' => 'gma', 'Glyma.08G042300' => 'gma', 'Glyma.10G033500' => 'gma', 'Glyma.10G185200' => 'gma', 'Glyma.17G004300' => 'gma', 'Glyma.19G161900' => 'gma', 'Glyma.20G205100' => 'gma', 'Glyma.20G205200' => 'gma', 'Gohir.A01G139101' => 'ghi', 'Gohir.A02G035600' => 'ghi', 'Gohir.A02G117901' => 'ghi', 'Gohir.A07G210100' => 'ghi', 'Gohir.A07G210200' => 'ghi', 'Gohir.A08G061100' => 'ghi', 'Gohir.A09G223000' => 'ghi', 'Gohir.A09G223100' => 'ghi', 'Gohir.A10G113900' => 'ghi', 'Gohir.A10G114000' => 'ghi', 'Gohir.D02G042300' => 'ghi', 'Gohir.D07G216100' => 'ghi', 'Gohir.D07G216200' => 'ghi', 'Gohir.D08G070400' => 'ghi', 'Gohir.D09G225000' => 'ghi', 'Gohir.D09G225100' => 'ghi', 'Gohir.D10G152300' => 'ghi', 'Gohir.D10G153200' => 'ghi', 'Gohir.D11G133701' => 'ghi', 'Gorai.004G074100' => 'gra', 'Gorai.005G046800' => 'gra', 'Gorai.006G246500' => 'gra', 'Gorai.006G246600' => 'gra', 'Gorai.007G142900' => 'gra', 'Gorai.011G171000' => 'gra', 'Gorai.011G171100' => 'gra', 'Gorai.013G104300' => 'gra', 'Gorai.013G104400' => 'gra', 'GSVIVG01000754001' => 'vvi', 'GSVIVG01000756001' => 'vvi', 'GSVIVG01010903001' => 'vvi', 'GSVIVG01017623001' => 'vvi', 'GSVIVG01018113001' => 'vvi', 'GSVIVG01018116001' => 'vvi', 'GSVIVG01018118001' => 'vvi', 'HanXRQChr03g0076211' => 'han', 'HanXRQChr03g0092431' => 'han', 'HanXRQChr03g0092441' => 'han', 'HanXRQChr03g0092591' => 'han', 'HanXRQChr03g0092671' => 'han', 'HanXRQChr03g0092681' => 'han', 'HanXRQChr03g0092691' => 'han', 'HanXRQChr03g0092701' => 'han', 'HanXRQChr03g0092721' => 'han', 'HanXRQChr03g0092731' => 'han', 'HanXRQChr04g0113681' => 'han', 'HanXRQChr10g0281371' => 'han', 'HanXRQChr11g0337141' => 'han', 'HanXRQChr13g0424521' => 'han', 'HanXRQChr13g0424531' => 'han', 'HanXRQChr13g0424541' => 'han', 'HanXRQChr16g0498221' => 'han', 'Haze_04377' => 'cav', 'Haze_11298' => 'cav', 'Haze_24547' => 'cav', 'Haze_24550' => 'cav', 'Haze_26587' => 'cav', 'Hma1.2p1_0650F.1_g195410' => 'hma', 'Hma1.2p1_0893F.1_g233470' => 'hma', 'HPP92_006508' => 'vpl', 'HPP92_024780' => 'vpl', 'Hund02688' => 'sun', 'Hund09380' => 'sun', 'Hund09381' => 'sun', 'Hund09832' => 'sun', 'Hund09833' => 'sun', 'Hund11351' => 'sun', 'Hund11513' => 'sun', 'Lalb_Chr06g0162591' => 'lal', 'Lalb_Chr06g0162601' => 'lal', 'Lalb_Chr06g0169321' => 'lal', 'Lalb_Chr09g0330951' => 'lal', 'Lalb_Chr16g0387631' => 'lal', 'Lalb_Chr21g0306241' => 'lal', 'Lalb_Chr25g0290051' => 'lal', 'Lalb_Chr25g0290061' => 'lal', 'Lalb_Chr25g0290071' => 'lal', 'Lj1g0003876' => 'lja', 'Lj1P1207T36' => 'lonja', 'Lj2C1156G12' => 'lonja', 'Lj3A793G39' => 'lonja', 'Lj3C580G2' => 'lonja', 'Lj3C780G2' => 'lonja', 'Lj3C780T4' => 'lonja', 'Lj3C793G9' => 'lonja', 'Lj4g0012960' => 'lja', 'Lj5g0021252' => 'lja', 'Lj5g0021484' => 'lja', 'Lj5g0024528' => 'lja', 'Lj6A399T12' => 'lonja', 'Lj6A656G65' => 'lonja', 'Lsat_1_v5_gn_3_125500' => 'lsa', 'Lsat_1_v5_gn_3_125540' => 'lsa', 'Lsat_1_v5_gn_5_72701' => 'lsa', 'Lsat_1_v5_gn_8_91560' => 'lsa', 'Lsat_1_v5_gn_9_9640' => 'lsa', 'Manes.01G200600' => 'mes', 'Manes.01G200700' => 'mes', 'Manes.03G168900' => 'mes', 'Manes.03G169000' => 'mes', 'Manes.05G085801' => 'mes', 'Manes.05G086200' => 'mes', 'Manes.15G036700' => 'mes', 'Manes.15G036900' => 'mes', 'Mapoly0004s0172' => 'mpo', 'Mapoly0023s0001' => 'mpo', 'Mapoly0142s0012' => 'mpo', 'MBI01_g32854_MAGBIO' => 'mbi', 'MBI11_g24427_MAGBIO' => 'mbi', 'MBI11_g47319_MAGBIO' => 'mbi', 'MCO01G433' => 'mco', 'MD00G1187800' => 'mdo', 'MD04G1226500' => 'mdo', 'MD05G1203900' => 'mdo', 'MD10G1191100' => 'mdo', 'MD12G1243500' => 'mdo', 'MD13G1207000' => 'mdo', 'MD13G1207100' => 'mdo', 'MD16G1208600' => 'mdo', 'Medtr1g050352' => 'mtr', 'Medtr1g070385' => 'mtr', 'Medtr1g070450' => 'mtr', 'Medtr1g075200' => 'mtr', 'Medtr1g075250' => 'mtr', 'Medtr1g075260' => 'mtr', 'Medtr1g475250' => 'mtr', 'Medtr4g075450' => 'mtr', 'Medtr7g096300' => 'mtr', 'Medtr8g105110' => 'mtr', 'MELO3C006470.2' => 'cme', 'MELO3C006471.2' => 'cme', 'MELO3C020772.2' => 'cme', 'MELO3C026780.2' => 'cme', 'MELO3C026781.2' => 'cme', 'Migut.D00390' => 'egut', 'Migut.G00435' => 'egut', 'Migut.G00436' => 'egut', 'Migut.G00718' => 'egut', 'MSTRG.21891' => 'ama', 'MSTRG.26910' => 'ama', 'MSTRG.4099' => 'ama', 'MSTRG.9925' => 'ama', 'Nitab4.5_0000165g0010' => 'nta', 'Nitab4.5_0000209g0180' => 'nta', 'Nitab4.5_0000244g0440' => 'nta', 'Nitab4.5_0000525g0220' => 'nta', 'Nitab4.5_0001597g0020' => 'nta', 'Nitab4.5_0001878g0040' => 'nta', 'Nitab4.5_0001878g0060' => 'nta', 'Nitab4.5_0002838g0100' => 'nta', 'Nitab4.5_0002838g0120' => 'nta', 'Nitab4.5_0004798g0030' => 'nta', 'Nitab4.5_0005420g0010' => 'nta', 'Nitab4.5_0005507g0010' => 'nta', 'Nitab4.5_0005574g0020' => 'nta', 'Nitab4.5_0005838g0010' => 'nta', 'Nitab4.5_0010580g0020' => 'nta', 'Nn1g02599' => 'nnu', 'Nn1g02608' => 'nnu', 'Nn3g17742' => 'nnu', 'Nn3g19534' => 'nnu', 'Nn3g19535' => 'nnu', 'Oeu008790.1' => 'oeu', 'Oeu008792.1' => 'oeu', 'Oeu032590.1' => 'oeu', 'Oeu035349.1' => 'oeu', 'Oeu049791.1' => 'oeu', 'Os01g0774500' => 'osa', 'Os03g0628800' => 'osa', 'Os03g0798600' => 'osa', 'Os05g0508800' => 'osa', 'Peaxi162Scf00036g02018' => 'pax', 'Peaxi162Scf00578g00032' => 'pax', 'Peaxi162Scf00578g00317' => 'pax', 'Peaxi162Scf00785g00114' => 'pax', 'Peaxi162Scf00813g00119' => 'pax', 'Peaxi162Scf00906g00227' => 'pax', 'PGR004G0875' => 'pgr', 'PGR004G2424' => 'pgr', 'PGR031G1239' => 'pgr', 'PGR031G2474' => 'pgr', 'PGR044G0423' => 'pgr', 'PGSC0003DMG400001128' => 'stu', 'PGSC0003DMG400007336' => 'stu', 'PGSC0003DMG400016318' => 'stu', 'PGSC0003DMG400016319' => 'stu', 'PGSC0003DMG400018074' => 'stu', 'Phvul.001G157700' => 'pvu', 'Phvul.002G148550' => 'pvu', 'Phvul.002G320200' => 'pvu', 'Phvul.003G089200' => 'pvu', 'Phvul.007G126000' => 'pvu', 'Phvul.007G126100' => 'pvu', 'Phvul.007G178000' => 'pvu', 'Phvul.007G178200' => 'pvu', 'Potri.002G043000' => 'ptr', 'Potri.002G043200' => 'ptr', 'Potri.003G123750' => 'ptr', 'Potri.005G055401' => 'ptr', 'Potri.005G219700' => 'ptr', 'Potri.005G220000' => 'ptr', 'Potri.008G161901' => 'ptr', 'Potri.008G162000' => 'ptr', 'Potri.008G162400' => 'ptr', 'Potri.010G076900' => 'ptr', 'Pp3c12_9180' => 'ppa', 'Pp3c13_19770' => 'ppa', 'Pp3c14_22950' => 'ppa', 'Pp3c16_12160' => 'ppa', 'Pp3c27_7820' => 'ppa', 'Pp3c2_3490' => 'ppa', 'Pp3c3_23700' => 'ppa', 'Pp3c3_36520' => 'ppa', 'Pp3c4_15250' => 'ppa', 'PRCOL_00007002' => 'pco', 'Prupe.1G030600' => 'ppe', 'Prupe.1G030700' => 'ppe', 'Prupe.6G345200' => 'ppe', 'Prupe.8G230300' => 'ppe', 'Prupe.8G230500' => 'ppe', 'Psat3g059600' => 'psa', 'Psat5g200920' => 'psa', 'Psat6g056440' => 'psa', 'Psat6g057360' => 'psa', 'Psat6g134120' => 'psa', 'Psat6g134160' => 'psa', 'Psat7g008640' => 'psa', 'Psat7g185240' => 'psa', 'PSO017G1330' => 'pso', 'PSO063G6097' => 'pso', 'PSO170G0835' => 'pso', 'PSO170G2499' => 'pso', 'PSO210G5058' => 'pso', 'PSO210G6154' => 'pso', 'PSO585G0031' => 'pso', 'PSO832G0264' => 'pso', 'PSO832G4288' => 'pso', 'QL03p027355' => 'qlo', 'QL03p027430' => 'qlo', 'QL04p081380' => 'qlo', 'QL06p015642' => 'qlo', 'QL06p015650' => 'qlo', 'QL06p015686' => 'qlo', 'QL12p042927' => 'qlo', 'QL93p1863_0035' => 'qlo', 'RcHm_v2.0_Chr3g0450581' => 'rch', 'RcHm_v2.0_Chr4g0390371' => 'rch', 'RcHm_v2.0_Chr4g0390381' => 'rch', 'RcHm_v2.0_Chr4g0390491' => 'rch', 'RcHm_v2.0_Chr4g0390501' => 'rch', 'RcHm_v2.0_Chr6g0289231' => 'rch', 'Rhsim04G0190400' => 'rsi', 'Rhsim04G0190500' => 'rsi', 'Rhsim04G0190600' => 'rsi', 'Rhsim13G0031400' => 'rsi', 'Rhsim13G0165600' => 'rsi', 'RhsimUnG0114600' => 'rsi', 'RhsimUnG0114700' => 'rsi', 'Sabra02G0034800' => 'sbr', 'Sabra02G0035100' => 'sbr', 'Sabra05G0168600' => 'sbr', 'Sabra05G0168800' => 'sbr', 'Sabra08G0123700' => 'sbr', 'Sabra10G0031900' => 'sbr', 'Sabra13G0039000' => 'sbr', 'SalBow2G0782' => 'sbo', 'SalBow2G1403' => 'sbo', 'SalBow4G0074' => 'sbo', 'SalBow4G2635' => 'sbo', 'SalBow5G3010' => 'sbo', 'Sc05g0000870' => 'sci', 'Sc05g0000890' => 'sci', 'Sc13g0005000' => 'sci', 'Sc13g0005030' => 'sci', 'Sc19g0003790' => 'sci', 'Sc19g0003800' => 'sci', 'Sed0003467' => 'sed', 'Sed0009355' => 'sed', 'Sed0009894' => 'sed', 'Sed0011972' => 'sed', 'Sed0021483' => 'sed', 'Sed0021750' => 'sed', 'Sed0026279' => 'sed', 'SEGI_05312' => 'sgi', 'SEGI_10112' => 'sgi', 'SEGI_15835' => 'sgi', 'SEGI_30386' => 'sgi', 'SEGI_34122' => 'sgi', 'SEGI_35063' => 'sgi', 'SGA_v2.0_scaffold101G29794' => 'sas', 'SGA_v2.0_scaffold1G00573' => 'sas', 'SGA_v2.0_scaffold79G25637' => 'sas', 'SGA_v2.0_scaffold88G27283' => 'sas', 'SGA_v2.0_scaffold88G27285' => 'sas', 'SGA_v2.0_scaffold88G27331' => 'sas', 'SHI09937' => 'shi', 'SMO119G0302' => 'smo', 'SMO137G0231' => 'smo', 'SMO367G1151' => 'smo', 'Solyc02g082000.3' => 'sly', 'Solyc06g031670.3' => 'sly', 'Solyc06g053810.3' => 'sly', 'Solyc07g025457.1' => 'sly', 'Solyc08g059740.1' => 'sly', 'Solyc08g059750.3' => 'sly', 'Solyc09g083370.3' => 'sly', 'Solyc12g038950.3' => 'sly', 'Sopen02g026630' => 'spe', 'Sopen06g018930' => 'spe', 'Sopen06g018940' => 'spe', 'Sopen08g009460' => 'spe', 'Sopen09g032290' => 'spe', 'Sp1g03080' => 'spa', 'Sp1g03090' => 'spa', 'Sp1g05480' => 'spa', 'Sp2g07860' => 'spa', 'Sp2g08430' => 'spa', 'Sp2g08440' => 'spa', 'Sp2g26200' => 'spa', 'Sp4g13170' => 'spa', 'Sp6g33840' => 'spa', 'SpUn1204_0010' => 'spa', 'TAR365G0908' => 'tar', 'TAR381G1270' => 'tar', 'TAR381G1651' => 'tar', 'TAR625G1131' => 'tar', 'TAR633G0962' => 'tar', 'TAR633G1729' => 'tar', 'TAR633G1864' => 'tar', 'TAR636G0221' => 'tar', 'TAR636G0314' => 'tar', 'TAR636G3202' => 'tar', 'THA.LOC104800805' => 'tha', 'THA.LOC104801096' => 'tha', 'THA.LOC104801555' => 'tha', 'THA.LOC104808491' => 'tha', 'THA.LOC104808595' => 'tha', 'THA.LOC104815985' => 'tha', 'THA.LOC104822250' => 'tha', 'THA.LOC104826071' => 'tha', 'Thecc.01G265200' => 'tca', 'Thecc.01G265300' => 'tca', 'Thecc.01G265700' => 'tca', 'Thecc.03G109100' => 'tca', 'Thecc.04G245900' => 'tca', 'Thecc.04G246000' => 'tca', 'Thhalv10003334m.g' => 'esa', 'Thhalv10005508m.g' => 'esa', 'Thhalv10005643m.g' => 'esa', 'Thhalv10007316m.g' => 'esa', 'Thhalv10009006m.g' => 'esa', 'Thhalv10009309m.g' => 'esa', 'Thhalv10014917m.g' => 'esa', 'Thhalv10014919m.g' => 'esa', 'Thhalv10015393m.g' => 'esa', 'Thhalv10016515m.g' => 'esa', 'Thhalv10029242m.g' => 'esa', 'TPR.G16654' => 'tpr', 'TPR.G20589' => 'tpr', 'TPR.G23029' => 'tpr', 'TPR.G27731' => 'tpr', 'TPR.G28889' => 'tpr', 'TPR.G28899' => 'tpr', 'TPR.G30846' => 'tpr', 'TPR.G5452' => 'tpr', 'TPR.G5713' => 'tpr', 'TPR.G9046' => 'tpr', 'TPR.G9061' => 'tpr', 'TWI09G1075' => 'twi', 'TWI12G0806' => 'twi', 'TWI18G0108' => 'twi', 'TWI53G1361' => 'twi', 'TWI73G0185' => 'twi', 'TWI73G0427' => 'twi', 'unitig_37.g12001' => 'ugi', 'unitig_747.g21660' => 'ugi', 'unitig_748.g7232' => 'ugi', 'unitig_748.g7315' => 'ugi', 'unitig_85.g27262' => 'ugi', 'unitig_92.g28220' => 'ugi', 'vmacro02632' => 'vma', 'vmacro08410' => 'vma', 'vmacro08411' => 'vma', 'vmacro15407' => 'vma', 'VMungo0251G3619' => 'vmu', 'VMungo0720G1204' => 'vmu', 'VMungo0720G1918' => 'vmu', 'VMungo0720G2387' => 'vmu', 'VMungo0720G2961' => 'vmu', 'VMungo1215G2154' => 'vmu', 'VMungo1383G2411' => 'vmu', 'Zm00001eb051130' => 'zma', 'Zm00001eb116830' => 'zma', 'Zm00001eb116850' => 'zma', 'Zm00001eb151740' => 'zma', 'Zm00001eb292360' => 'zma', 'Zm00001eb301640' => 'zma' ) $gf_id = 'HOM05D000856' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000856' ) $data_identifier = 'HOM05D000856' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 13, 'ath' => (int) 10, 'atr' => (int) 1, 'acertr' => (int) 8, 'cqu' => (int) 6, 'bca' => (int) 21, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 11, 'car' => (int) 9, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 8, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 5, 'fan' => (int) 16, 'fve' => (int) 6, 'gma' => (int) 11, 'ghi' => (int) 19, 'gra' => (int) 9, 'vvi' => (int) 7, 'han' => (int) 17, 'cav' => (int) 5, 'hma' => (int) 2, 'vpl' => (int) 2, 'sun' => (int) 7, 'lal' => (int) 9, 'lja' => (int) 5, 'lonja' => (int) 9, 'lsa' => (int) 5, 'mes' => (int) 8, 'mpo' => (int) 3, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 10, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 15, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 9, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 9, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 6, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 5, 'spa' => (int) 10, 'tar' => (int) 10, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 11, 'tpr' => (int) 11, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 4, 'vmu' => (int) 7, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb301640' $species_info = array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ) $local_species = 'ptr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000856', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p00010' => 'bna', 'A03p04160' => 'bna', 'A03p17160' => 'bna', 'A04p23370' => 'bna', 'A05p14860' => 'bna', 'A08p37020' => 'bna', 'A09p08050' => 'bna', 'A09p66800' => 'bna', 'A09p67940' => 'bna', 'A10p02680' => 'bna', 'A10p05320' => 'bna', 'Aa31LG1G20560' => 'aar', 'Aa31LG1G20610' => 'aar', 'Aa31LG1G7810' => 'aar', 'Aa31LG5G3590' => 'aar', 'Aa31LG5G6140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3819' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4683' => 'aag', 'Actinidia04480' => 'ach', 'Actinidia05466' => 'ach', 'Actinidia08445' => 'ach', 'Actinidia21170' => 'ach', 'Actinidia24812' => 'ach', 'Actinidia24951' => 'ach', 'Actinidia40088' => 'ach', 'Ah.02g111660' => 'amhyb', 'Ah.11g048900' => 'amhyb', 'Ah.11g049910' => 'amhyb', 'AL1G13870' => 'aly', 'AL1G13880' => 'aly', 'AL1G16760' => 'aly', 'AL390U10020' => 'aly', 'AL4G25520' => 'aly', 'AL6G19890' => 'aly', 'AL6G19900' => 'aly', 'AL6G19910' => 'aly', 'AL8G40100' => 'aly', 'Aqoxy2G03562' => 'aox', 'Aqoxy5G00316' => 'aox', 'Aqoxy5G00926' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1628KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1H403S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2FU6SJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.882I6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8YRY2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YN1SN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AF70II' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZA8L1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F916KL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHRD8H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KTZ8QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S22EMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8M29T' => 'arhy', 'AT1G04270' => 'ath', 'AT1G04280' => 'ath', 'AT1G06750' => 'ath', 'AT1G33850' => 'ath', 'AT2G30630' => 'ath', 'AT5G09490' => 'ath', 'AT5G09500' => 'ath', 'AT5G09510' => 'ath', 'AT5G43640' => 'ath', 'AT5G63070' => 'ath', 'ATR0605G315' => 'atr', 'Atru.chr11.175' => 'acertr', 'Atru.chr11.653' => 'acertr', 'Atru.chr3.1616' => 'acertr', 'Atru.chr4.2230' => 'acertr', 'Atru.chr4.2232' => 'acertr', 'Atru.chr5.1598' => 'acertr', 'Atru.chr5.1600' => 'acertr', 'Atru.chr5.2188' => 'acertr', 'AUR62008326' => 'cqu', 'AUR62011922' => 'cqu', 'AUR62011924' => 'cqu', 'AUR62021771' => 'cqu', 'AUR62032237' => 'cqu', 'AUR62032240' => 'cqu', 'BcaB01g05572' => 'bca', 'BcaB02g10337' => 'bca', 'BcaB04g19944' => 'bca', 'BcaB05g21548' => 'bca', 'BcaB05g21549' => 'bca', 'BcaB05g23227' => 'bca', 'BcaB06g26256' => 'bca', 'BcaB06g26257' => 'bca', 'BcaB06g28379' => 'bca', 'BcaC02g11159' => 'bca', 'BcaC03g13258' => 'bca', 'BcaC03g13259' => 'bca', 'BcaC05g24456' => 'bca', 'BcaC05g24457' => 'bca', 'BcaC07g36922' => 'bca', 'BcaC07g36923' => 'bca', 'BcaC07g42050' => 'bca', 'BcaC07g42176' => 'bca', 'BcaC07g42195' => 'bca', 'BcaC07g42196' => 'bca', 'BcaNung06674' => 'bca', 'BolC2t06351H' => 'bol', 'BolC2t06352H' => 'bol', 'BolC3t12993H' => 'bol', 'BolC4t23525H' => 'bol', 'BolC4t27475H' => 'bol', 'BolC5t29025H' => 'bol', 'BolC5t29026H' => 'bol', 'BolC8t46898H' => 'bol', 'BolC8t46899H' => 'bol', 'BolC8t52630H' => 'bol', 'BolC8t52765H' => 'bol', 'BolC9t53824H' => 'bol', 'BraA03t09760Z' => 'bra', 'BraA03t10990Z' => 'bra', 'BraA05t20413Z' => 'bra', 'BraA08t35602Z' => 'bra', 'BraA09t36458Z' => 'bra', 'BraA09t42018Z' => 'bra', 'BraA09t42129Z' => 'bra', 'BraA10t42536Z' => 'bra', 'BraA10t42537Z' => 'bra', 'C01p10690' => 'bna', 'C02p03890' => 'bna', 'C02p03900' => 'bna', 'C03p04620' => 'bna', 'C04p19870' => 'bna', 'C04p59670' => 'bna', 'C05p02460' => 'bna', 'C05p02470' => 'bna', 'C08p00980' => 'bna', 'C08p00990' => 'bna', 'C08p51030' => 'bna', 'C08p52360' => 'bna', 'C09p09120' => 'bna', 'CAN.G19.15' => 'can', 'CAN.G251.10' => 'can', 'CAN.G251.9' => 'can', 'CAN.G398.24' => 'can', 'CAN.G410.32' => 'can', 'CAN.G881.2' => 'can', 'CANSAT01G3025' => 'cansat', 'CANSAT78G1211' => 'cansat', 'CANSAT78G1218' => 'cansat', 'CANSAT78G1521' => 'cansat', 'CANSAT78G1670' => 'cansat', 'CARHR003600' => 'chi', 'CARHR003610' => 'chi', 'CARHR006290' => 'chi', 'CARHR006430' => 'chi', 'CARHR124110' => 'chi', 'CARHR203870' => 'chi', 'CARHR203880' => 'chi', 'CARHR203890' => 'chi', 'CARHR276880' => 'chi', 'Carub.0001s0346' => 'cru', 'Carub.0001s0347' => 'cru', 'Carub.0001s0607' => 'cru', 'Carub.0003s2768' => 'cru', 'Carub.0003s2769' => 'cru', 'Carub.0004s1178' => 'cru', 'Carub.0006s0806' => 'cru', 'Carub.0006s0807' => 'cru', 'Carub.0006s0808' => 'cru', 'Carub.0008s0501' => 'cru', 'Carub.0008s2379' => 'cru', 'Ca_08655_v3' => 'car', 'Ca_08922_v3' => 'car', 'Ca_08923_v3' => 'car', 'Ca_09119_v3' => 'car', 'Ca_09703_v3' => 'car', 'Ca_09705_v3' => 'car', 'Ca_09835_v3' => 'car', 'Ca_26403_v3' => 'car', 'Ca_30719_v3' => 'car', 'CBR_g17958' => 'cbr', 'CBR_g40516' => 'cbr', 'Cc00_g05350' => 'ccan', 'Cc01_g18690' => 'ccan', 'Cc03_g04830' => 'ccan', 'Cc03_g04850' => 'ccan', 'CDE02G4469' => 'cde', 'CDE06G0883' => 'cde', 'CDE06G1295' => 'cde', 'CDE06G1390' => 'cde', 'CDE07G0584' => 'cde', 'CDE07G1084' => 'cde', 'CDE08G1259' => 'cde', 'Cfa002341' => 'cfa', 'Cfa024337' => 'cfa', 'Ciclev10004749m.g' => 'ccl', 'Ciclev10006127m.g' => 'ccl', 'Ciclev10019720m.g' => 'ccl', 'Ciclev10022652m.g' => 'ccl', 'CiPaw.01G190400' => 'cil', 'CiPaw.01G190500' => 'cil', 'CiPaw.02G116400' => 'cil', 'CiPaw.02G116500' => 'cil', 'CiPaw.04G183000' => 'cil', 'CiPaw.04G183300' => 'cil', 'ClCG05G004610' => 'cla', 'ClCG05G004620' => 'cla', 'ClCG06G006730' => 'cla', 'ClCG06G006740' => 'cla', 'ClCG11G003690' => 'cla', 'COL.COLO4_08276' => 'col', 'COL.COLO4_08277' => 'col', 'COL.COLO4_15787' => 'col', 'COL.COLO4_15789' => 'col', 'Cpa.g.c44815' => 'cpa', 'Cpa.g.sc52.144' => 'cpa', 'Cpa.g.sc58.46' => 'cpa', 'Cpa.g.sc58.47' => 'cpa', 'Cre08.g360900' => 'cre', 'CsaV3_2G013030' => 'csa', 'CsaV3_2G013050' => 'csa', 'CsaV3_2G015620' => 'csa', 'CsaV3_3G012590' => 'csa', 'CsaV3_3G012600' => 'csa', 'CSS0001641' => 'camsi', 'CSS0008310' => 'camsi', 'CSS0013011' => 'camsi', 'CSS0017147' => 'camsi', 'CSS0022970' => 'camsi', 'CSS0025655' => 'camsi', 'CSS0028665' => 'camsi', 'CSS0029117' => 'camsi', 'CSS0032024' => 'camsi', 'CSS0039681' => 'camsi', 'CSS0046516' => 'camsi', 'CSS0050307' => 'camsi', 'DCAR_005871' => 'dca', 'DCAR_007342' => 'dca', 'DCAR_024228' => 'dca', 'DCAR_027277' => 'dca', 'DCAR_030718' => 'dca', 'Dinv20287' => 'din', 'Dinv22461' => 'din', 'Dinv22464' => 'din', 'Dinv29912' => 'din', 'Dinv29913' => 'din', 'Dinv34580' => 'din', 'Dinv34582' => 'din', 'Dinv44632' => 'din', 'Duzib052G0266' => 'dzi', 'Duzib133G0907' => 'dzi', 'Duzib133G1034' => 'dzi', 'Duzib138G0207' => 'dzi', 'Duzib138G0491' => 'dzi', 'Duzib151G0812' => 'dzi', 'Duzib151G1166' => 'dzi', 'Duzib168G0192' => 'dzi', 'Duzib211G0077' => 'dzi', 'Duzib212G0429' => 'dzi', 'Duzib212G0472' => 'dzi', 'ECA233G2617' => 'eca', 'ECA236G4188' => 'eca', 'ECA240G0936' => 'eca', 'ECA240G1129' => 'eca', 'ECA247G0623' => 'eca', 'EL10Ac5g10451' => 'bvu', 'EL10Ac5g10453' => 'bvu', 'EL10Ac5g10894' => 'bvu', 'Eucgr.H00192' => 'egr', 'Eucgr.H00193' => 'egr', 'Eucgr.H00194' => 'egr', 'Eucgr.J01562' => 'egr', 'Eucgr.K03301' => 'egr', 'FAN02G0632' => 'fan', 'FAN05G5378' => 'fan', 'FAN09G3247' => 'fan', 'FAN12G0435' => 'fan', 'FAN12G2426' => 'fan', 'FAN14G1707' => 'fan', 'FAN14G4725' => 'fan', 'FAN15G2071' => 'fan', 'FAN17G3065' => 'fan', 'FAN19G1376' => 'fan', 'FAN20G0354' => 'fan', 'FAN20G2429' => 'fan', 'FAN20G2658' => 'fan', 'FAN24G2343' => 'fan', 'FAN27G2362' => 'fan', 'FAN28G1765' => 'fan', 'FvH4_1g16020' => 'fve', 'FvH4_2g04890' => 'fve', 'FvH4_2g22270' => 'fve', 'FvH4_4g02630' => 'fve', 'FvH4_4g02640' => 'fve', 'FvH4_6g02650' => 'fve', 'Glyma.02G140600' => 'gma', 'Glyma.03G159900' => 'gma', 'Glyma.05G234800' => 'gma', 'Glyma.07G269600' => 'gma', 'Glyma.08G042300' => 'gma', 'Glyma.10G033500' => 'gma', 'Glyma.10G185200' => 'gma', 'Glyma.17G004300' => 'gma', 'Glyma.19G161900' => 'gma', 'Glyma.20G205100' => 'gma', 'Glyma.20G205200' => 'gma', 'Gohir.A01G139101' => 'ghi', 'Gohir.A02G035600' => 'ghi', 'Gohir.A02G117901' => 'ghi', 'Gohir.A07G210100' => 'ghi', 'Gohir.A07G210200' => 'ghi', 'Gohir.A08G061100' => 'ghi', 'Gohir.A09G223000' => 'ghi', 'Gohir.A09G223100' => 'ghi', 'Gohir.A10G113900' => 'ghi', 'Gohir.A10G114000' => 'ghi', 'Gohir.D02G042300' => 'ghi', 'Gohir.D07G216100' => 'ghi', 'Gohir.D07G216200' => 'ghi', 'Gohir.D08G070400' => 'ghi', 'Gohir.D09G225000' => 'ghi', 'Gohir.D09G225100' => 'ghi', 'Gohir.D10G152300' => 'ghi', 'Gohir.D10G153200' => 'ghi', 'Gohir.D11G133701' => 'ghi', 'Gorai.004G074100' => 'gra', 'Gorai.005G046800' => 'gra', 'Gorai.006G246500' => 'gra', 'Gorai.006G246600' => 'gra', 'Gorai.007G142900' => 'gra', 'Gorai.011G171000' => 'gra', 'Gorai.011G171100' => 'gra', 'Gorai.013G104300' => 'gra', 'Gorai.013G104400' => 'gra', 'GSVIVG01000754001' => 'vvi', 'GSVIVG01000756001' => 'vvi', 'GSVIVG01010903001' => 'vvi', 'GSVIVG01017623001' => 'vvi', 'GSVIVG01018113001' => 'vvi', 'GSVIVG01018116001' => 'vvi', 'GSVIVG01018118001' => 'vvi', 'HanXRQChr03g0076211' => 'han', 'HanXRQChr03g0092431' => 'han', 'HanXRQChr03g0092441' => 'han', 'HanXRQChr03g0092591' => 'han', 'HanXRQChr03g0092671' => 'han', 'HanXRQChr03g0092681' => 'han', 'HanXRQChr03g0092691' => 'han', 'HanXRQChr03g0092701' => 'han', 'HanXRQChr03g0092721' => 'han', 'HanXRQChr03g0092731' => 'han', 'HanXRQChr04g0113681' => 'han', 'HanXRQChr10g0281371' => 'han', 'HanXRQChr11g0337141' => 'han', 'HanXRQChr13g0424521' => 'han', 'HanXRQChr13g0424531' => 'han', 'HanXRQChr13g0424541' => 'han', 'HanXRQChr16g0498221' => 'han', 'Haze_04377' => 'cav', 'Haze_11298' => 'cav', 'Haze_24547' => 'cav', 'Haze_24550' => 'cav', 'Haze_26587' => 'cav', 'Hma1.2p1_0650F.1_g195410' => 'hma', 'Hma1.2p1_0893F.1_g233470' => 'hma', 'HPP92_006508' => 'vpl', 'HPP92_024780' => 'vpl', 'Hund02688' => 'sun', 'Hund09380' => 'sun', 'Hund09381' => 'sun', 'Hund09832' => 'sun', 'Hund09833' => 'sun', 'Hund11351' => 'sun', 'Hund11513' => 'sun', 'Lalb_Chr06g0162591' => 'lal', 'Lalb_Chr06g0162601' => 'lal', 'Lalb_Chr06g0169321' => 'lal', 'Lalb_Chr09g0330951' => 'lal', 'Lalb_Chr16g0387631' => 'lal', 'Lalb_Chr21g0306241' => 'lal', 'Lalb_Chr25g0290051' => 'lal', 'Lalb_Chr25g0290061' => 'lal', 'Lalb_Chr25g0290071' => 'lal', 'Lj1g0003876' => 'lja', 'Lj1P1207T36' => 'lonja', 'Lj2C1156G12' => 'lonja', 'Lj3A793G39' => 'lonja', 'Lj3C580G2' => 'lonja', 'Lj3C780G2' => 'lonja', 'Lj3C780T4' => 'lonja', 'Lj3C793G9' => 'lonja', 'Lj4g0012960' => 'lja', 'Lj5g0021252' => 'lja', 'Lj5g0021484' => 'lja', 'Lj5g0024528' => 'lja', 'Lj6A399T12' => 'lonja', 'Lj6A656G65' => 'lonja', 'Lsat_1_v5_gn_3_125500' => 'lsa', 'Lsat_1_v5_gn_3_125540' => 'lsa', 'Lsat_1_v5_gn_5_72701' => 'lsa', 'Lsat_1_v5_gn_8_91560' => 'lsa', 'Lsat_1_v5_gn_9_9640' => 'lsa', 'Manes.01G200600' => 'mes', 'Manes.01G200700' => 'mes', 'Manes.03G168900' => 'mes', 'Manes.03G169000' => 'mes', 'Manes.05G085801' => 'mes', 'Manes.05G086200' => 'mes', 'Manes.15G036700' => 'mes', 'Manes.15G036900' => 'mes', 'Mapoly0004s0172' => 'mpo', 'Mapoly0023s0001' => 'mpo', 'Mapoly0142s0012' => 'mpo', 'MBI01_g32854_MAGBIO' => 'mbi', 'MBI11_g24427_MAGBIO' => 'mbi', 'MBI11_g47319_MAGBIO' => 'mbi', 'MCO01G433' => 'mco', 'MD00G1187800' => 'mdo', 'MD04G1226500' => 'mdo', 'MD05G1203900' => 'mdo', 'MD10G1191100' => 'mdo', 'MD12G1243500' => 'mdo', 'MD13G1207000' => 'mdo', 'MD13G1207100' => 'mdo', 'MD16G1208600' => 'mdo', 'Medtr1g050352' => 'mtr', 'Medtr1g070385' => 'mtr', 'Medtr1g070450' => 'mtr', 'Medtr1g075200' => 'mtr', 'Medtr1g075250' => 'mtr', 'Medtr1g075260' => 'mtr', 'Medtr1g475250' => 'mtr', 'Medtr4g075450' => 'mtr', 'Medtr7g096300' => 'mtr', 'Medtr8g105110' => 'mtr', 'MELO3C006470.2' => 'cme', 'MELO3C006471.2' => 'cme', 'MELO3C020772.2' => 'cme', 'MELO3C026780.2' => 'cme', 'MELO3C026781.2' => 'cme', 'Migut.D00390' => 'egut', 'Migut.G00435' => 'egut', 'Migut.G00436' => 'egut', 'Migut.G00718' => 'egut', 'MSTRG.21891' => 'ama', 'MSTRG.26910' => 'ama', 'MSTRG.4099' => 'ama', 'MSTRG.9925' => 'ama', 'Nitab4.5_0000165g0010' => 'nta', 'Nitab4.5_0000209g0180' => 'nta', 'Nitab4.5_0000244g0440' => 'nta', 'Nitab4.5_0000525g0220' => 'nta', 'Nitab4.5_0001597g0020' => 'nta', 'Nitab4.5_0001878g0040' => 'nta', 'Nitab4.5_0001878g0060' => 'nta', 'Nitab4.5_0002838g0100' => 'nta', 'Nitab4.5_0002838g0120' => 'nta', 'Nitab4.5_0004798g0030' => 'nta', 'Nitab4.5_0005420g0010' => 'nta', 'Nitab4.5_0005507g0010' => 'nta', 'Nitab4.5_0005574g0020' => 'nta', 'Nitab4.5_0005838g0010' => 'nta', 'Nitab4.5_0010580g0020' => 'nta', 'Nn1g02599' => 'nnu', 'Nn1g02608' => 'nnu', 'Nn3g17742' => 'nnu', 'Nn3g19534' => 'nnu', 'Nn3g19535' => 'nnu', 'Oeu008790.1' => 'oeu', 'Oeu008792.1' => 'oeu', 'Oeu032590.1' => 'oeu', 'Oeu035349.1' => 'oeu', 'Oeu049791.1' => 'oeu', 'Os01g0774500' => 'osa', 'Os03g0628800' => 'osa', 'Os03g0798600' => 'osa', 'Os05g0508800' => 'osa', 'Peaxi162Scf00036g02018' => 'pax', 'Peaxi162Scf00578g00032' => 'pax', 'Peaxi162Scf00578g00317' => 'pax', 'Peaxi162Scf00785g00114' => 'pax', 'Peaxi162Scf00813g00119' => 'pax', 'Peaxi162Scf00906g00227' => 'pax', 'PGR004G0875' => 'pgr', 'PGR004G2424' => 'pgr', 'PGR031G1239' => 'pgr', 'PGR031G2474' => 'pgr', 'PGR044G0423' => 'pgr', 'PGSC0003DMG400001128' => 'stu', 'PGSC0003DMG400007336' => 'stu', 'PGSC0003DMG400016318' => 'stu', 'PGSC0003DMG400016319' => 'stu', 'PGSC0003DMG400018074' => 'stu', 'Phvul.001G157700' => 'pvu', 'Phvul.002G148550' => 'pvu', 'Phvul.002G320200' => 'pvu', 'Phvul.003G089200' => 'pvu', 'Phvul.007G126000' => 'pvu', 'Phvul.007G126100' => 'pvu', 'Phvul.007G178000' => 'pvu', 'Phvul.007G178200' => 'pvu', 'Potri.002G043000' => 'ptr', 'Potri.002G043200' => 'ptr', 'Potri.003G123750' => 'ptr', 'Potri.005G055401' => 'ptr', 'Potri.005G219700' => 'ptr', 'Potri.005G220000' => 'ptr', 'Potri.008G161901' => 'ptr', 'Potri.008G162000' => 'ptr', 'Potri.008G162400' => 'ptr', 'Potri.010G076900' => 'ptr', 'Pp3c12_9180' => 'ppa', 'Pp3c13_19770' => 'ppa', 'Pp3c14_22950' => 'ppa', 'Pp3c16_12160' => 'ppa', 'Pp3c27_7820' => 'ppa', 'Pp3c2_3490' => 'ppa', 'Pp3c3_23700' => 'ppa', 'Pp3c3_36520' => 'ppa', 'Pp3c4_15250' => 'ppa', 'PRCOL_00007002' => 'pco', 'Prupe.1G030600' => 'ppe', 'Prupe.1G030700' => 'ppe', 'Prupe.6G345200' => 'ppe', 'Prupe.8G230300' => 'ppe', 'Prupe.8G230500' => 'ppe', 'Psat3g059600' => 'psa', 'Psat5g200920' => 'psa', 'Psat6g056440' => 'psa', 'Psat6g057360' => 'psa', 'Psat6g134120' => 'psa', 'Psat6g134160' => 'psa', 'Psat7g008640' => 'psa', 'Psat7g185240' => 'psa', 'PSO017G1330' => 'pso', 'PSO063G6097' => 'pso', 'PSO170G0835' => 'pso', 'PSO170G2499' => 'pso', 'PSO210G5058' => 'pso', 'PSO210G6154' => 'pso', 'PSO585G0031' => 'pso', 'PSO832G0264' => 'pso', 'PSO832G4288' => 'pso', 'QL03p027355' => 'qlo', 'QL03p027430' => 'qlo', 'QL04p081380' => 'qlo', 'QL06p015642' => 'qlo', 'QL06p015650' => 'qlo', 'QL06p015686' => 'qlo', 'QL12p042927' => 'qlo', 'QL93p1863_0035' => 'qlo', 'RcHm_v2.0_Chr3g0450581' => 'rch', 'RcHm_v2.0_Chr4g0390371' => 'rch', 'RcHm_v2.0_Chr4g0390381' => 'rch', 'RcHm_v2.0_Chr4g0390491' => 'rch', 'RcHm_v2.0_Chr4g0390501' => 'rch', 'RcHm_v2.0_Chr6g0289231' => 'rch', 'Rhsim04G0190400' => 'rsi', 'Rhsim04G0190500' => 'rsi', 'Rhsim04G0190600' => 'rsi', 'Rhsim13G0031400' => 'rsi', 'Rhsim13G0165600' => 'rsi', 'RhsimUnG0114600' => 'rsi', 'RhsimUnG0114700' => 'rsi', 'Sabra02G0034800' => 'sbr', 'Sabra02G0035100' => 'sbr', 'Sabra05G0168600' => 'sbr', 'Sabra05G0168800' => 'sbr', 'Sabra08G0123700' => 'sbr', 'Sabra10G0031900' => 'sbr', 'Sabra13G0039000' => 'sbr', 'SalBow2G0782' => 'sbo', 'SalBow2G1403' => 'sbo', 'SalBow4G0074' => 'sbo', 'SalBow4G2635' => 'sbo', 'SalBow5G3010' => 'sbo', 'Sc05g0000870' => 'sci', 'Sc05g0000890' => 'sci', 'Sc13g0005000' => 'sci', 'Sc13g0005030' => 'sci', 'Sc19g0003790' => 'sci', 'Sc19g0003800' => 'sci', 'Sed0003467' => 'sed', 'Sed0009355' => 'sed', 'Sed0009894' => 'sed', 'Sed0011972' => 'sed', 'Sed0021483' => 'sed', 'Sed0021750' => 'sed', 'Sed0026279' => 'sed', 'SEGI_05312' => 'sgi', 'SEGI_10112' => 'sgi', 'SEGI_15835' => 'sgi', 'SEGI_30386' => 'sgi', 'SEGI_34122' => 'sgi', 'SEGI_35063' => 'sgi', 'SGA_v2.0_scaffold101G29794' => 'sas', 'SGA_v2.0_scaffold1G00573' => 'sas', 'SGA_v2.0_scaffold79G25637' => 'sas', 'SGA_v2.0_scaffold88G27283' => 'sas', 'SGA_v2.0_scaffold88G27285' => 'sas', 'SGA_v2.0_scaffold88G27331' => 'sas', 'SHI09937' => 'shi', 'SMO119G0302' => 'smo', 'SMO137G0231' => 'smo', 'SMO367G1151' => 'smo', 'Solyc02g082000.3' => 'sly', 'Solyc06g031670.3' => 'sly', 'Solyc06g053810.3' => 'sly', 'Solyc07g025457.1' => 'sly', 'Solyc08g059740.1' => 'sly', 'Solyc08g059750.3' => 'sly', 'Solyc09g083370.3' => 'sly', 'Solyc12g038950.3' => 'sly', 'Sopen02g026630' => 'spe', 'Sopen06g018930' => 'spe', 'Sopen06g018940' => 'spe', 'Sopen08g009460' => 'spe', 'Sopen09g032290' => 'spe', 'Sp1g03080' => 'spa', 'Sp1g03090' => 'spa', 'Sp1g05480' => 'spa', 'Sp2g07860' => 'spa', 'Sp2g08430' => 'spa', 'Sp2g08440' => 'spa', 'Sp2g26200' => 'spa', 'Sp4g13170' => 'spa', 'Sp6g33840' => 'spa', 'SpUn1204_0010' => 'spa', 'TAR365G0908' => 'tar', 'TAR381G1270' => 'tar', 'TAR381G1651' => 'tar', 'TAR625G1131' => 'tar', 'TAR633G0962' => 'tar', 'TAR633G1729' => 'tar', 'TAR633G1864' => 'tar', 'TAR636G0221' => 'tar', 'TAR636G0314' => 'tar', 'TAR636G3202' => 'tar', 'THA.LOC104800805' => 'tha', 'THA.LOC104801096' => 'tha', 'THA.LOC104801555' => 'tha', 'THA.LOC104808491' => 'tha', 'THA.LOC104808595' => 'tha', 'THA.LOC104815985' => 'tha', 'THA.LOC104822250' => 'tha', 'THA.LOC104826071' => 'tha', 'Thecc.01G265200' => 'tca', 'Thecc.01G265300' => 'tca', 'Thecc.01G265700' => 'tca', 'Thecc.03G109100' => 'tca', 'Thecc.04G245900' => 'tca', 'Thecc.04G246000' => 'tca', 'Thhalv10003334m.g' => 'esa', 'Thhalv10005508m.g' => 'esa', 'Thhalv10005643m.g' => 'esa', 'Thhalv10007316m.g' => 'esa', 'Thhalv10009006m.g' => 'esa', 'Thhalv10009309m.g' => 'esa', 'Thhalv10014917m.g' => 'esa', 'Thhalv10014919m.g' => 'esa', 'Thhalv10015393m.g' => 'esa', 'Thhalv10016515m.g' => 'esa', 'Thhalv10029242m.g' => 'esa', 'TPR.G16654' => 'tpr', 'TPR.G20589' => 'tpr', 'TPR.G23029' => 'tpr', 'TPR.G27731' => 'tpr', 'TPR.G28889' => 'tpr', 'TPR.G28899' => 'tpr', 'TPR.G30846' => 'tpr', 'TPR.G5452' => 'tpr', 'TPR.G5713' => 'tpr', 'TPR.G9046' => 'tpr', 'TPR.G9061' => 'tpr', 'TWI09G1075' => 'twi', 'TWI12G0806' => 'twi', 'TWI18G0108' => 'twi', 'TWI53G1361' => 'twi', 'TWI73G0185' => 'twi', 'TWI73G0427' => 'twi', 'unitig_37.g12001' => 'ugi', 'unitig_747.g21660' => 'ugi', 'unitig_748.g7232' => 'ugi', 'unitig_748.g7315' => 'ugi', 'unitig_85.g27262' => 'ugi', 'unitig_92.g28220' => 'ugi', 'vmacro02632' => 'vma', 'vmacro08410' => 'vma', 'vmacro08411' => 'vma', 'vmacro15407' => 'vma', 'VMungo0251G3619' => 'vmu', 'VMungo0720G1204' => 'vmu', 'VMungo0720G1918' => 'vmu', 'VMungo0720G2387' => 'vmu', 'VMungo0720G2961' => 'vmu', 'VMungo1215G2154' => 'vmu', 'VMungo1383G2411' => 'vmu', 'Zm00001eb051130' => 'zma', 'Zm00001eb116830' => 'zma', 'Zm00001eb116850' => 'zma', 'Zm00001eb151740' => 'zma', 'Zm00001eb292360' => 'zma', 'Zm00001eb301640' => 'zma' ), 'gf_id' => 'HOM05D000856', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000856' ), 'data_identifier' => 'HOM05D000856', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000856', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p00010' => 'bna', 'A03p04160' => 'bna', 'A03p17160' => 'bna', 'A04p23370' => 'bna', 'A05p14860' => 'bna', 'A08p37020' => 'bna', 'A09p08050' => 'bna', 'A09p66800' => 'bna', 'A09p67940' => 'bna', 'A10p02680' => 'bna', 'A10p05320' => 'bna', 'Aa31LG1G20560' => 'aar', 'Aa31LG1G20610' => 'aar', 'Aa31LG1G7810' => 'aar', 'Aa31LG5G3590' => 'aar', 'Aa31LG5G6140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3819' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4683' => 'aag', 'Actinidia04480' => 'ach', 'Actinidia05466' => 'ach', 'Actinidia08445' => 'ach', 'Actinidia21170' => 'ach', 'Actinidia24812' => 'ach', 'Actinidia24951' => 'ach', 'Actinidia40088' => 'ach', 'Ah.02g111660' => 'amhyb', 'Ah.11g048900' => 'amhyb', 'Ah.11g049910' => 'amhyb', 'AL1G13870' => 'aly', 'AL1G13880' => 'aly', 'AL1G16760' => 'aly', 'AL390U10020' => 'aly', 'AL4G25520' => 'aly', 'AL6G19890' => 'aly', 'AL6G19900' => 'aly', 'AL6G19910' => 'aly', 'AL8G40100' => 'aly', 'Aqoxy2G03562' => 'aox', 'Aqoxy5G00316' => 'aox', 'Aqoxy5G00926' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1628KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1H403S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2FU6SJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.882I6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8YRY2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YN1SN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AF70II' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZA8L1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F916KL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHRD8H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KTZ8QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S22EMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8M29T' => 'arhy', 'AT1G04270' => 'ath', 'AT1G04280' => 'ath', 'AT1G06750' => 'ath', 'AT1G33850' => 'ath', 'AT2G30630' => 'ath', 'AT5G09490' => 'ath', 'AT5G09500' => 'ath', 'AT5G09510' => 'ath', 'AT5G43640' => 'ath', 'AT5G63070' => 'ath', 'ATR0605G315' => 'atr', 'Atru.chr11.175' => 'acertr', 'Atru.chr11.653' => 'acertr', 'Atru.chr3.1616' => 'acertr', 'Atru.chr4.2230' => 'acertr', 'Atru.chr4.2232' => 'acertr', 'Atru.chr5.1598' => 'acertr', 'Atru.chr5.1600' => 'acertr', 'Atru.chr5.2188' => 'acertr', 'AUR62008326' => 'cqu', 'AUR62011922' => 'cqu', 'AUR62011924' => 'cqu', 'AUR62021771' => 'cqu', 'AUR62032237' => 'cqu', 'AUR62032240' => 'cqu', 'BcaB01g05572' => 'bca', 'BcaB02g10337' => 'bca', 'BcaB04g19944' => 'bca', 'BcaB05g21548' => 'bca', 'BcaB05g21549' => 'bca', 'BcaB05g23227' => 'bca', 'BcaB06g26256' => 'bca', 'BcaB06g26257' => 'bca', 'BcaB06g28379' => 'bca', 'BcaC02g11159' => 'bca', 'BcaC03g13258' => 'bca', 'BcaC03g13259' => 'bca', 'BcaC05g24456' => 'bca', 'BcaC05g24457' => 'bca', 'BcaC07g36922' => 'bca', 'BcaC07g36923' => 'bca', 'BcaC07g42050' => 'bca', 'BcaC07g42176' => 'bca', 'BcaC07g42195' => 'bca', 'BcaC07g42196' => 'bca', 'BcaNung06674' => 'bca', 'BolC2t06351H' => 'bol', 'BolC2t06352H' => 'bol', 'BolC3t12993H' => 'bol', 'BolC4t23525H' => 'bol', 'BolC4t27475H' => 'bol', 'BolC5t29025H' => 'bol', 'BolC5t29026H' => 'bol', 'BolC8t46898H' => 'bol', 'BolC8t46899H' => 'bol', 'BolC8t52630H' => 'bol', 'BolC8t52765H' => 'bol', 'BolC9t53824H' => 'bol', 'BraA03t09760Z' => 'bra', 'BraA03t10990Z' => 'bra', 'BraA05t20413Z' => 'bra', 'BraA08t35602Z' => 'bra', 'BraA09t36458Z' => 'bra', 'BraA09t42018Z' => 'bra', 'BraA09t42129Z' => 'bra', 'BraA10t42536Z' => 'bra', 'BraA10t42537Z' => 'bra', 'C01p10690' => 'bna', 'C02p03890' => 'bna', 'C02p03900' => 'bna', 'C03p04620' => 'bna', 'C04p19870' => 'bna', 'C04p59670' => 'bna', 'C05p02460' => 'bna', 'C05p02470' => 'bna', 'C08p00980' => 'bna', 'C08p00990' => 'bna', 'C08p51030' => 'bna', 'C08p52360' => 'bna', 'C09p09120' => 'bna', 'CAN.G19.15' => 'can', 'CAN.G251.10' => 'can', 'CAN.G251.9' => 'can', 'CAN.G398.24' => 'can', 'CAN.G410.32' => 'can', 'CAN.G881.2' => 'can', 'CANSAT01G3025' => 'cansat', 'CANSAT78G1211' => 'cansat', 'CANSAT78G1218' => 'cansat', 'CANSAT78G1521' => 'cansat', 'CANSAT78G1670' => 'cansat', 'CARHR003600' => 'chi', 'CARHR003610' => 'chi', 'CARHR006290' => 'chi', 'CARHR006430' => 'chi', 'CARHR124110' => 'chi', 'CARHR203870' => 'chi', 'CARHR203880' => 'chi', 'CARHR203890' => 'chi', 'CARHR276880' => 'chi', 'Carub.0001s0346' => 'cru', 'Carub.0001s0347' => 'cru', 'Carub.0001s0607' => 'cru', 'Carub.0003s2768' => 'cru', 'Carub.0003s2769' => 'cru', 'Carub.0004s1178' => 'cru', 'Carub.0006s0806' => 'cru', 'Carub.0006s0807' => 'cru', 'Carub.0006s0808' => 'cru', 'Carub.0008s0501' => 'cru', 'Carub.0008s2379' => 'cru', 'Ca_08655_v3' => 'car', 'Ca_08922_v3' => 'car', 'Ca_08923_v3' => 'car', 'Ca_09119_v3' => 'car', 'Ca_09703_v3' => 'car', 'Ca_09705_v3' => 'car', 'Ca_09835_v3' => 'car', 'Ca_26403_v3' => 'car', 'Ca_30719_v3' => 'car', 'CBR_g17958' => 'cbr', 'CBR_g40516' => 'cbr', 'Cc00_g05350' => 'ccan', 'Cc01_g18690' => 'ccan', 'Cc03_g04830' => 'ccan', 'Cc03_g04850' => 'ccan', 'CDE02G4469' => 'cde', 'CDE06G0883' => 'cde', 'CDE06G1295' => 'cde', 'CDE06G1390' => 'cde', 'CDE07G0584' => 'cde', 'CDE07G1084' => 'cde', 'CDE08G1259' => 'cde', 'Cfa002341' => 'cfa', 'Cfa024337' => 'cfa', 'Ciclev10004749m.g' => 'ccl', 'Ciclev10006127m.g' => 'ccl', 'Ciclev10019720m.g' => 'ccl', 'Ciclev10022652m.g' => 'ccl', 'CiPaw.01G190400' => 'cil', 'CiPaw.01G190500' => 'cil', 'CiPaw.02G116400' => 'cil', 'CiPaw.02G116500' => 'cil', 'CiPaw.04G183000' => 'cil', 'CiPaw.04G183300' => 'cil', 'ClCG05G004610' => 'cla', 'ClCG05G004620' => 'cla', 'ClCG06G006730' => 'cla', 'ClCG06G006740' => 'cla', 'ClCG11G003690' => 'cla', 'COL.COLO4_08276' => 'col', 'COL.COLO4_08277' => 'col', 'COL.COLO4_15787' => 'col', 'COL.COLO4_15789' => 'col', 'Cpa.g.c44815' => 'cpa', 'Cpa.g.sc52.144' => 'cpa', 'Cpa.g.sc58.46' => 'cpa', 'Cpa.g.sc58.47' => 'cpa', 'Cre08.g360900' => 'cre', 'CsaV3_2G013030' => 'csa', 'CsaV3_2G013050' => 'csa', 'CsaV3_2G015620' => 'csa', 'CsaV3_3G012590' => 'csa', 'CsaV3_3G012600' => 'csa', 'CSS0001641' => 'camsi', 'CSS0008310' => 'camsi', 'CSS0013011' => 'camsi', 'CSS0017147' => 'camsi', 'CSS0022970' => 'camsi', 'CSS0025655' => 'camsi', 'CSS0028665' => 'camsi', 'CSS0029117' => 'camsi', 'CSS0032024' => 'camsi', 'CSS0039681' => 'camsi', 'CSS0046516' => 'camsi', 'CSS0050307' => 'camsi', 'DCAR_005871' => 'dca', 'DCAR_007342' => 'dca', 'DCAR_024228' => 'dca', 'DCAR_027277' => 'dca', 'DCAR_030718' => 'dca', 'Dinv20287' => 'din', 'Dinv22461' => 'din', 'Dinv22464' => 'din', 'Dinv29912' => 'din', 'Dinv29913' => 'din', 'Dinv34580' => 'din', 'Dinv34582' => 'din', 'Dinv44632' => 'din', 'Duzib052G0266' => 'dzi', 'Duzib133G0907' => 'dzi', 'Duzib133G1034' => 'dzi', 'Duzib138G0207' => 'dzi', 'Duzib138G0491' => 'dzi', 'Duzib151G0812' => 'dzi', 'Duzib151G1166' => 'dzi', 'Duzib168G0192' => 'dzi', 'Duzib211G0077' => 'dzi', 'Duzib212G0429' => 'dzi', 'Duzib212G0472' => 'dzi', 'ECA233G2617' => 'eca', 'ECA236G4188' => 'eca', 'ECA240G0936' => 'eca', 'ECA240G1129' => 'eca', 'ECA247G0623' => 'eca', 'EL10Ac5g10451' => 'bvu', 'EL10Ac5g10453' => 'bvu', 'EL10Ac5g10894' => 'bvu', 'Eucgr.H00192' => 'egr', 'Eucgr.H00193' => 'egr', 'Eucgr.H00194' => 'egr', 'Eucgr.J01562' => 'egr', 'Eucgr.K03301' => 'egr', 'FAN02G0632' => 'fan', 'FAN05G5378' => 'fan', 'FAN09G3247' => 'fan', 'FAN12G0435' => 'fan', 'FAN12G2426' => 'fan', 'FAN14G1707' => 'fan', 'FAN14G4725' => 'fan', 'FAN15G2071' => 'fan', 'FAN17G3065' => 'fan', 'FAN19G1376' => 'fan', 'FAN20G0354' => 'fan', 'FAN20G2429' => 'fan', 'FAN20G2658' => 'fan', 'FAN24G2343' => 'fan', 'FAN27G2362' => 'fan', 'FAN28G1765' => 'fan', 'FvH4_1g16020' => 'fve', 'FvH4_2g04890' => 'fve', 'FvH4_2g22270' => 'fve', 'FvH4_4g02630' => 'fve', 'FvH4_4g02640' => 'fve', 'FvH4_6g02650' => 'fve', 'Glyma.02G140600' => 'gma', 'Glyma.03G159900' => 'gma', 'Glyma.05G234800' => 'gma', 'Glyma.07G269600' => 'gma', 'Glyma.08G042300' => 'gma', 'Glyma.10G033500' => 'gma', 'Glyma.10G185200' => 'gma', 'Glyma.17G004300' => 'gma', 'Glyma.19G161900' => 'gma', 'Glyma.20G205100' => 'gma', 'Glyma.20G205200' => 'gma', 'Gohir.A01G139101' => 'ghi', 'Gohir.A02G035600' => 'ghi', 'Gohir.A02G117901' => 'ghi', 'Gohir.A07G210100' => 'ghi', 'Gohir.A07G210200' => 'ghi', 'Gohir.A08G061100' => 'ghi', 'Gohir.A09G223000' => 'ghi', 'Gohir.A09G223100' => 'ghi', 'Gohir.A10G113900' => 'ghi', 'Gohir.A10G114000' => 'ghi', 'Gohir.D02G042300' => 'ghi', 'Gohir.D07G216100' => 'ghi', 'Gohir.D07G216200' => 'ghi', 'Gohir.D08G070400' => 'ghi', 'Gohir.D09G225000' => 'ghi', 'Gohir.D09G225100' => 'ghi', 'Gohir.D10G152300' => 'ghi', 'Gohir.D10G153200' => 'ghi', 'Gohir.D11G133701' => 'ghi', 'Gorai.004G074100' => 'gra', 'Gorai.005G046800' => 'gra', 'Gorai.006G246500' => 'gra', 'Gorai.006G246600' => 'gra', 'Gorai.007G142900' => 'gra', 'Gorai.011G171000' => 'gra', 'Gorai.011G171100' => 'gra', 'Gorai.013G104300' => 'gra', 'Gorai.013G104400' => 'gra', 'GSVIVG01000754001' => 'vvi', 'GSVIVG01000756001' => 'vvi', 'GSVIVG01010903001' => 'vvi', 'GSVIVG01017623001' => 'vvi', 'GSVIVG01018113001' => 'vvi', 'GSVIVG01018116001' => 'vvi', 'GSVIVG01018118001' => 'vvi', 'HanXRQChr03g0076211' => 'han', 'HanXRQChr03g0092431' => 'han', 'HanXRQChr03g0092441' => 'han', 'HanXRQChr03g0092591' => 'han', 'HanXRQChr03g0092671' => 'han', 'HanXRQChr03g0092681' => 'han', 'HanXRQChr03g0092691' => 'han', 'HanXRQChr03g0092701' => 'han', 'HanXRQChr03g0092721' => 'han', 'HanXRQChr03g0092731' => 'han', 'HanXRQChr04g0113681' => 'han', 'HanXRQChr10g0281371' => 'han', 'HanXRQChr11g0337141' => 'han', 'HanXRQChr13g0424521' => 'han', 'HanXRQChr13g0424531' => 'han', 'HanXRQChr13g0424541' => 'han', 'HanXRQChr16g0498221' => 'han', 'Haze_04377' => 'cav', 'Haze_11298' => 'cav', 'Haze_24547' => 'cav', 'Haze_24550' => 'cav', 'Haze_26587' => 'cav', 'Hma1.2p1_0650F.1_g195410' => 'hma', 'Hma1.2p1_0893F.1_g233470' => 'hma', 'HPP92_006508' => 'vpl', 'HPP92_024780' => 'vpl', 'Hund02688' => 'sun', 'Hund09380' => 'sun', 'Hund09381' => 'sun', 'Hund09832' => 'sun', 'Hund09833' => 'sun', 'Hund11351' => 'sun', 'Hund11513' => 'sun', 'Lalb_Chr06g0162591' => 'lal', 'Lalb_Chr06g0162601' => 'lal', 'Lalb_Chr06g0169321' => 'lal', 'Lalb_Chr09g0330951' => 'lal', 'Lalb_Chr16g0387631' => 'lal', 'Lalb_Chr21g0306241' => 'lal', 'Lalb_Chr25g0290051' => 'lal', 'Lalb_Chr25g0290061' => 'lal', 'Lalb_Chr25g0290071' => 'lal', 'Lj1g0003876' => 'lja', 'Lj1P1207T36' => 'lonja', 'Lj2C1156G12' => 'lonja', 'Lj3A793G39' => 'lonja', 'Lj3C580G2' => 'lonja', 'Lj3C780G2' => 'lonja', 'Lj3C780T4' => 'lonja', 'Lj3C793G9' => 'lonja', 'Lj4g0012960' => 'lja', 'Lj5g0021252' => 'lja', 'Lj5g0021484' => 'lja', 'Lj5g0024528' => 'lja', 'Lj6A399T12' => 'lonja', 'Lj6A656G65' => 'lonja', 'Lsat_1_v5_gn_3_125500' => 'lsa', 'Lsat_1_v5_gn_3_125540' => 'lsa', 'Lsat_1_v5_gn_5_72701' => 'lsa', 'Lsat_1_v5_gn_8_91560' => 'lsa', 'Lsat_1_v5_gn_9_9640' => 'lsa', 'Manes.01G200600' => 'mes', 'Manes.01G200700' => 'mes', 'Manes.03G168900' => 'mes', 'Manes.03G169000' => 'mes', 'Manes.05G085801' => 'mes', 'Manes.05G086200' => 'mes', 'Manes.15G036700' => 'mes', 'Manes.15G036900' => 'mes', 'Mapoly0004s0172' => 'mpo', 'Mapoly0023s0001' => 'mpo', 'Mapoly0142s0012' => 'mpo', 'MBI01_g32854_MAGBIO' => 'mbi', 'MBI11_g24427_MAGBIO' => 'mbi', 'MBI11_g47319_MAGBIO' => 'mbi', 'MCO01G433' => 'mco', 'MD00G1187800' => 'mdo', 'MD04G1226500' => 'mdo', 'MD05G1203900' => 'mdo', 'MD10G1191100' => 'mdo', 'MD12G1243500' => 'mdo', 'MD13G1207000' => 'mdo', 'MD13G1207100' => 'mdo', 'MD16G1208600' => 'mdo', 'Medtr1g050352' => 'mtr', 'Medtr1g070385' => 'mtr', 'Medtr1g070450' => 'mtr', 'Medtr1g075200' => 'mtr', 'Medtr1g075250' => 'mtr', 'Medtr1g075260' => 'mtr', 'Medtr1g475250' => 'mtr', 'Medtr4g075450' => 'mtr', 'Medtr7g096300' => 'mtr', 'Medtr8g105110' => 'mtr', 'MELO3C006470.2' => 'cme', 'MELO3C006471.2' => 'cme', 'MELO3C020772.2' => 'cme', 'MELO3C026780.2' => 'cme', 'MELO3C026781.2' => 'cme', 'Migut.D00390' => 'egut', 'Migut.G00435' => 'egut', 'Migut.G00436' => 'egut', 'Migut.G00718' => 'egut', 'MSTRG.21891' => 'ama', 'MSTRG.26910' => 'ama', 'MSTRG.4099' => 'ama', 'MSTRG.9925' => 'ama', 'Nitab4.5_0000165g0010' => 'nta', 'Nitab4.5_0000209g0180' => 'nta', 'Nitab4.5_0000244g0440' => 'nta', 'Nitab4.5_0000525g0220' => 'nta', 'Nitab4.5_0001597g0020' => 'nta', 'Nitab4.5_0001878g0040' => 'nta', 'Nitab4.5_0001878g0060' => 'nta', 'Nitab4.5_0002838g0100' => 'nta', 'Nitab4.5_0002838g0120' => 'nta', 'Nitab4.5_0004798g0030' => 'nta', 'Nitab4.5_0005420g0010' => 'nta', 'Nitab4.5_0005507g0010' => 'nta', 'Nitab4.5_0005574g0020' => 'nta', 'Nitab4.5_0005838g0010' => 'nta', 'Nitab4.5_0010580g0020' => 'nta', 'Nn1g02599' => 'nnu', 'Nn1g02608' => 'nnu', 'Nn3g17742' => 'nnu', 'Nn3g19534' => 'nnu', 'Nn3g19535' => 'nnu', 'Oeu008790.1' => 'oeu', 'Oeu008792.1' => 'oeu', 'Oeu032590.1' => 'oeu', 'Oeu035349.1' => 'oeu', 'Oeu049791.1' => 'oeu', 'Os01g0774500' => 'osa', 'Os03g0628800' => 'osa', 'Os03g0798600' => 'osa', 'Os05g0508800' => 'osa', 'Peaxi162Scf00036g02018' => 'pax', 'Peaxi162Scf00578g00032' => 'pax', 'Peaxi162Scf00578g00317' => 'pax', 'Peaxi162Scf00785g00114' => 'pax', 'Peaxi162Scf00813g00119' => 'pax', 'Peaxi162Scf00906g00227' => 'pax', 'PGR004G0875' => 'pgr', 'PGR004G2424' => 'pgr', 'PGR031G1239' => 'pgr', 'PGR031G2474' => 'pgr', 'PGR044G0423' => 'pgr', 'PGSC0003DMG400001128' => 'stu', 'PGSC0003DMG400007336' => 'stu', 'PGSC0003DMG400016318' => 'stu', 'PGSC0003DMG400016319' => 'stu', 'PGSC0003DMG400018074' => 'stu', 'Phvul.001G157700' => 'pvu', 'Phvul.002G148550' => 'pvu', 'Phvul.002G320200' => 'pvu', 'Phvul.003G089200' => 'pvu', 'Phvul.007G126000' => 'pvu', 'Phvul.007G126100' => 'pvu', 'Phvul.007G178000' => 'pvu', 'Phvul.007G178200' => 'pvu', 'Potri.002G043000' => 'ptr', 'Potri.002G043200' => 'ptr', 'Potri.003G123750' => 'ptr', 'Potri.005G055401' => 'ptr', 'Potri.005G219700' => 'ptr', 'Potri.005G220000' => 'ptr', 'Potri.008G161901' => 'ptr', 'Potri.008G162000' => 'ptr', 'Potri.008G162400' => 'ptr', 'Potri.010G076900' => 'ptr', 'Pp3c12_9180' => 'ppa', 'Pp3c13_19770' => 'ppa', 'Pp3c14_22950' => 'ppa', 'Pp3c16_12160' => 'ppa', 'Pp3c27_7820' => 'ppa', 'Pp3c2_3490' => 'ppa', 'Pp3c3_23700' => 'ppa', 'Pp3c3_36520' => 'ppa', 'Pp3c4_15250' => 'ppa', 'PRCOL_00007002' => 'pco', 'Prupe.1G030600' => 'ppe', 'Prupe.1G030700' => 'ppe', 'Prupe.6G345200' => 'ppe', 'Prupe.8G230300' => 'ppe', 'Prupe.8G230500' => 'ppe', 'Psat3g059600' => 'psa', 'Psat5g200920' => 'psa', 'Psat6g056440' => 'psa', 'Psat6g057360' => 'psa', 'Psat6g134120' => 'psa', 'Psat6g134160' => 'psa', 'Psat7g008640' => 'psa', 'Psat7g185240' => 'psa', 'PSO017G1330' => 'pso', 'PSO063G6097' => 'pso', 'PSO170G0835' => 'pso', 'PSO170G2499' => 'pso', 'PSO210G5058' => 'pso', 'PSO210G6154' => 'pso', 'PSO585G0031' => 'pso', 'PSO832G0264' => 'pso', 'PSO832G4288' => 'pso', 'QL03p027355' => 'qlo', 'QL03p027430' => 'qlo', 'QL04p081380' => 'qlo', 'QL06p015642' => 'qlo', 'QL06p015650' => 'qlo', 'QL06p015686' => 'qlo', 'QL12p042927' => 'qlo', 'QL93p1863_0035' => 'qlo', 'RcHm_v2.0_Chr3g0450581' => 'rch', 'RcHm_v2.0_Chr4g0390371' => 'rch', 'RcHm_v2.0_Chr4g0390381' => 'rch', 'RcHm_v2.0_Chr4g0390491' => 'rch', 'RcHm_v2.0_Chr4g0390501' => 'rch', 'RcHm_v2.0_Chr6g0289231' => 'rch', 'Rhsim04G0190400' => 'rsi', 'Rhsim04G0190500' => 'rsi', 'Rhsim04G0190600' => 'rsi', 'Rhsim13G0031400' => 'rsi', 'Rhsim13G0165600' => 'rsi', 'RhsimUnG0114600' => 'rsi', 'RhsimUnG0114700' => 'rsi', 'Sabra02G0034800' => 'sbr', 'Sabra02G0035100' => 'sbr', 'Sabra05G0168600' => 'sbr', 'Sabra05G0168800' => 'sbr', 'Sabra08G0123700' => 'sbr', 'Sabra10G0031900' => 'sbr', 'Sabra13G0039000' => 'sbr', 'SalBow2G0782' => 'sbo', 'SalBow2G1403' => 'sbo', 'SalBow4G0074' => 'sbo', 'SalBow4G2635' => 'sbo', 'SalBow5G3010' => 'sbo', 'Sc05g0000870' => 'sci', 'Sc05g0000890' => 'sci', 'Sc13g0005000' => 'sci', 'Sc13g0005030' => 'sci', 'Sc19g0003790' => 'sci', 'Sc19g0003800' => 'sci', 'Sed0003467' => 'sed', 'Sed0009355' => 'sed', 'Sed0009894' => 'sed', 'Sed0011972' => 'sed', 'Sed0021483' => 'sed', 'Sed0021750' => 'sed', 'Sed0026279' => 'sed', 'SEGI_05312' => 'sgi', 'SEGI_10112' => 'sgi', 'SEGI_15835' => 'sgi', 'SEGI_30386' => 'sgi', 'SEGI_34122' => 'sgi', 'SEGI_35063' => 'sgi', 'SGA_v2.0_scaffold101G29794' => 'sas', 'SGA_v2.0_scaffold1G00573' => 'sas', 'SGA_v2.0_scaffold79G25637' => 'sas', 'SGA_v2.0_scaffold88G27283' => 'sas', 'SGA_v2.0_scaffold88G27285' => 'sas', 'SGA_v2.0_scaffold88G27331' => 'sas', 'SHI09937' => 'shi', 'SMO119G0302' => 'smo', 'SMO137G0231' => 'smo', 'SMO367G1151' => 'smo', 'Solyc02g082000.3' => 'sly', 'Solyc06g031670.3' => 'sly', 'Solyc06g053810.3' => 'sly', 'Solyc07g025457.1' => 'sly', 'Solyc08g059740.1' => 'sly', 'Solyc08g059750.3' => 'sly', 'Solyc09g083370.3' => 'sly', 'Solyc12g038950.3' => 'sly', 'Sopen02g026630' => 'spe', 'Sopen06g018930' => 'spe', 'Sopen06g018940' => 'spe', 'Sopen08g009460' => 'spe', 'Sopen09g032290' => 'spe', 'Sp1g03080' => 'spa', 'Sp1g03090' => 'spa', 'Sp1g05480' => 'spa', 'Sp2g07860' => 'spa', 'Sp2g08430' => 'spa', 'Sp2g08440' => 'spa', 'Sp2g26200' => 'spa', 'Sp4g13170' => 'spa', 'Sp6g33840' => 'spa', 'SpUn1204_0010' => 'spa', 'TAR365G0908' => 'tar', 'TAR381G1270' => 'tar', 'TAR381G1651' => 'tar', 'TAR625G1131' => 'tar', 'TAR633G0962' => 'tar', 'TAR633G1729' => 'tar', 'TAR633G1864' => 'tar', 'TAR636G0221' => 'tar', 'TAR636G0314' => 'tar', 'TAR636G3202' => 'tar', 'THA.LOC104800805' => 'tha', 'THA.LOC104801096' => 'tha', 'THA.LOC104801555' => 'tha', 'THA.LOC104808491' => 'tha', 'THA.LOC104808595' => 'tha', 'THA.LOC104815985' => 'tha', 'THA.LOC104822250' => 'tha', 'THA.LOC104826071' => 'tha', 'Thecc.01G265200' => 'tca', 'Thecc.01G265300' => 'tca', 'Thecc.01G265700' => 'tca', 'Thecc.03G109100' => 'tca', 'Thecc.04G245900' => 'tca', 'Thecc.04G246000' => 'tca', 'Thhalv10003334m.g' => 'esa', 'Thhalv10005508m.g' => 'esa', 'Thhalv10005643m.g' => 'esa', 'Thhalv10007316m.g' => 'esa', 'Thhalv10009006m.g' => 'esa', 'Thhalv10009309m.g' => 'esa', 'Thhalv10014917m.g' => 'esa', 'Thhalv10014919m.g' => 'esa', 'Thhalv10015393m.g' => 'esa', 'Thhalv10016515m.g' => 'esa', 'Thhalv10029242m.g' => 'esa', 'TPR.G16654' => 'tpr', 'TPR.G20589' => 'tpr', 'TPR.G23029' => 'tpr', 'TPR.G27731' => 'tpr', 'TPR.G28889' => 'tpr', 'TPR.G28899' => 'tpr', 'TPR.G30846' => 'tpr', 'TPR.G5452' => 'tpr', 'TPR.G5713' => 'tpr', 'TPR.G9046' => 'tpr', 'TPR.G9061' => 'tpr', 'TWI09G1075' => 'twi', 'TWI12G0806' => 'twi', 'TWI18G0108' => 'twi', 'TWI53G1361' => 'twi', 'TWI73G0185' => 'twi', 'TWI73G0427' => 'twi', 'unitig_37.g12001' => 'ugi', 'unitig_747.g21660' => 'ugi', 'unitig_748.g7232' => 'ugi', 'unitig_748.g7315' => 'ugi', 'unitig_85.g27262' => 'ugi', 'unitig_92.g28220' => 'ugi', 'vmacro02632' => 'vma', 'vmacro08410' => 'vma', 'vmacro08411' => 'vma', 'vmacro15407' => 'vma', 'VMungo0251G3619' => 'vmu', 'VMungo0720G1204' => 'vmu', 'VMungo0720G1918' => 'vmu', 'VMungo0720G2387' => 'vmu', 'VMungo0720G2961' => 'vmu', 'VMungo1215G2154' => 'vmu', 'VMungo1383G2411' => 'vmu', 'Zm00001eb051130' => 'zma', 'Zm00001eb116830' => 'zma', 'Zm00001eb116850' => 'zma', 'Zm00001eb151740' => 'zma', 'Zm00001eb292360' => 'zma', 'Zm00001eb301640' => 'zma' ) $gf_id = 'HOM05D000856' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000856' ) $data_identifier = 'HOM05D000856' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 13, 'ath' => (int) 10, 'atr' => (int) 1, 'acertr' => (int) 8, 'cqu' => (int) 6, 'bca' => (int) 21, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 11, 'car' => (int) 9, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 8, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 5, 'fan' => (int) 16, 'fve' => (int) 6, 'gma' => (int) 11, 'ghi' => (int) 19, 'gra' => (int) 9, 'vvi' => (int) 7, 'han' => (int) 17, 'cav' => (int) 5, 'hma' => (int) 2, 'vpl' => (int) 2, 'sun' => (int) 7, 'lal' => (int) 9, 'lja' => (int) 5, 'lonja' => (int) 9, 'lsa' => (int) 5, 'mes' => (int) 8, 'mpo' => (int) 3, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 10, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 15, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 9, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 9, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 6, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 5, 'spa' => (int) 10, 'tar' => (int) 10, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 11, 'tpr' => (int) 11, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 4, 'vmu' => (int) 7, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb301640' $species_info = array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ) $local_species = 'ptr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000856', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p00010' => 'bna', 'A03p04160' => 'bna', 'A03p17160' => 'bna', 'A04p23370' => 'bna', 'A05p14860' => 'bna', 'A08p37020' => 'bna', 'A09p08050' => 'bna', 'A09p66800' => 'bna', 'A09p67940' => 'bna', 'A10p02680' => 'bna', 'A10p05320' => 'bna', 'Aa31LG1G20560' => 'aar', 'Aa31LG1G20610' => 'aar', 'Aa31LG1G7810' => 'aar', 'Aa31LG5G3590' => 'aar', 'Aa31LG5G6140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3819' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4683' => 'aag', 'Actinidia04480' => 'ach', 'Actinidia05466' => 'ach', 'Actinidia08445' => 'ach', 'Actinidia21170' => 'ach', 'Actinidia24812' => 'ach', 'Actinidia24951' => 'ach', 'Actinidia40088' => 'ach', 'Ah.02g111660' => 'amhyb', 'Ah.11g048900' => 'amhyb', 'Ah.11g049910' => 'amhyb', 'AL1G13870' => 'aly', 'AL1G13880' => 'aly', 'AL1G16760' => 'aly', 'AL390U10020' => 'aly', 'AL4G25520' => 'aly', 'AL6G19890' => 'aly', 'AL6G19900' => 'aly', 'AL6G19910' => 'aly', 'AL8G40100' => 'aly', 'Aqoxy2G03562' => 'aox', 'Aqoxy5G00316' => 'aox', 'Aqoxy5G00926' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1628KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1H403S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2FU6SJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.882I6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8YRY2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YN1SN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AF70II' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZA8L1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F916KL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHRD8H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KTZ8QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S22EMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8M29T' => 'arhy', 'AT1G04270' => 'ath', 'AT1G04280' => 'ath', 'AT1G06750' => 'ath', 'AT1G33850' => 'ath', 'AT2G30630' => 'ath', 'AT5G09490' => 'ath', 'AT5G09500' => 'ath', 'AT5G09510' => 'ath', 'AT5G43640' => 'ath', 'AT5G63070' => 'ath', 'ATR0605G315' => 'atr', 'Atru.chr11.175' => 'acertr', 'Atru.chr11.653' => 'acertr', 'Atru.chr3.1616' => 'acertr', 'Atru.chr4.2230' => 'acertr', 'Atru.chr4.2232' => 'acertr', 'Atru.chr5.1598' => 'acertr', 'Atru.chr5.1600' => 'acertr', 'Atru.chr5.2188' => 'acertr', 'AUR62008326' => 'cqu', 'AUR62011922' => 'cqu', 'AUR62011924' => 'cqu', 'AUR62021771' => 'cqu', 'AUR62032237' => 'cqu', 'AUR62032240' => 'cqu', 'BcaB01g05572' => 'bca', 'BcaB02g10337' => 'bca', 'BcaB04g19944' => 'bca', 'BcaB05g21548' => 'bca', 'BcaB05g21549' => 'bca', 'BcaB05g23227' => 'bca', 'BcaB06g26256' => 'bca', 'BcaB06g26257' => 'bca', 'BcaB06g28379' => 'bca', 'BcaC02g11159' => 'bca', 'BcaC03g13258' => 'bca', 'BcaC03g13259' => 'bca', 'BcaC05g24456' => 'bca', 'BcaC05g24457' => 'bca', 'BcaC07g36922' => 'bca', 'BcaC07g36923' => 'bca', 'BcaC07g42050' => 'bca', 'BcaC07g42176' => 'bca', 'BcaC07g42195' => 'bca', 'BcaC07g42196' => 'bca', 'BcaNung06674' => 'bca', 'BolC2t06351H' => 'bol', 'BolC2t06352H' => 'bol', 'BolC3t12993H' => 'bol', 'BolC4t23525H' => 'bol', 'BolC4t27475H' => 'bol', 'BolC5t29025H' => 'bol', 'BolC5t29026H' => 'bol', 'BolC8t46898H' => 'bol', 'BolC8t46899H' => 'bol', 'BolC8t52630H' => 'bol', 'BolC8t52765H' => 'bol', 'BolC9t53824H' => 'bol', 'BraA03t09760Z' => 'bra', 'BraA03t10990Z' => 'bra', 'BraA05t20413Z' => 'bra', 'BraA08t35602Z' => 'bra', 'BraA09t36458Z' => 'bra', 'BraA09t42018Z' => 'bra', 'BraA09t42129Z' => 'bra', 'BraA10t42536Z' => 'bra', 'BraA10t42537Z' => 'bra', 'C01p10690' => 'bna', 'C02p03890' => 'bna', 'C02p03900' => 'bna', 'C03p04620' => 'bna', 'C04p19870' => 'bna', 'C04p59670' => 'bna', 'C05p02460' => 'bna', 'C05p02470' => 'bna', 'C08p00980' => 'bna', 'C08p00990' => 'bna', 'C08p51030' => 'bna', 'C08p52360' => 'bna', 'C09p09120' => 'bna', 'CAN.G19.15' => 'can', 'CAN.G251.10' => 'can', 'CAN.G251.9' => 'can', 'CAN.G398.24' => 'can', 'CAN.G410.32' => 'can', 'CAN.G881.2' => 'can', 'CANSAT01G3025' => 'cansat', 'CANSAT78G1211' => 'cansat', 'CANSAT78G1218' => 'cansat', 'CANSAT78G1521' => 'cansat', 'CANSAT78G1670' => 'cansat', 'CARHR003600' => 'chi', 'CARHR003610' => 'chi', 'CARHR006290' => 'chi', 'CARHR006430' => 'chi', 'CARHR124110' => 'chi', 'CARHR203870' => 'chi', 'CARHR203880' => 'chi', 'CARHR203890' => 'chi', 'CARHR276880' => 'chi', 'Carub.0001s0346' => 'cru', 'Carub.0001s0347' => 'cru', 'Carub.0001s0607' => 'cru', 'Carub.0003s2768' => 'cru', 'Carub.0003s2769' => 'cru', 'Carub.0004s1178' => 'cru', 'Carub.0006s0806' => 'cru', 'Carub.0006s0807' => 'cru', 'Carub.0006s0808' => 'cru', 'Carub.0008s0501' => 'cru', 'Carub.0008s2379' => 'cru', 'Ca_08655_v3' => 'car', 'Ca_08922_v3' => 'car', 'Ca_08923_v3' => 'car', 'Ca_09119_v3' => 'car', 'Ca_09703_v3' => 'car', 'Ca_09705_v3' => 'car', 'Ca_09835_v3' => 'car', 'Ca_26403_v3' => 'car', 'Ca_30719_v3' => 'car', 'CBR_g17958' => 'cbr', 'CBR_g40516' => 'cbr', 'Cc00_g05350' => 'ccan', 'Cc01_g18690' => 'ccan', 'Cc03_g04830' => 'ccan', 'Cc03_g04850' => 'ccan', 'CDE02G4469' => 'cde', 'CDE06G0883' => 'cde', 'CDE06G1295' => 'cde', 'CDE06G1390' => 'cde', 'CDE07G0584' => 'cde', 'CDE07G1084' => 'cde', 'CDE08G1259' => 'cde', 'Cfa002341' => 'cfa', 'Cfa024337' => 'cfa', 'Ciclev10004749m.g' => 'ccl', 'Ciclev10006127m.g' => 'ccl', 'Ciclev10019720m.g' => 'ccl', 'Ciclev10022652m.g' => 'ccl', 'CiPaw.01G190400' => 'cil', 'CiPaw.01G190500' => 'cil', 'CiPaw.02G116400' => 'cil', 'CiPaw.02G116500' => 'cil', 'CiPaw.04G183000' => 'cil', 'CiPaw.04G183300' => 'cil', 'ClCG05G004610' => 'cla', 'ClCG05G004620' => 'cla', 'ClCG06G006730' => 'cla', 'ClCG06G006740' => 'cla', 'ClCG11G003690' => 'cla', 'COL.COLO4_08276' => 'col', 'COL.COLO4_08277' => 'col', 'COL.COLO4_15787' => 'col', 'COL.COLO4_15789' => 'col', 'Cpa.g.c44815' => 'cpa', 'Cpa.g.sc52.144' => 'cpa', 'Cpa.g.sc58.46' => 'cpa', 'Cpa.g.sc58.47' => 'cpa', 'Cre08.g360900' => 'cre', 'CsaV3_2G013030' => 'csa', 'CsaV3_2G013050' => 'csa', 'CsaV3_2G015620' => 'csa', 'CsaV3_3G012590' => 'csa', 'CsaV3_3G012600' => 'csa', 'CSS0001641' => 'camsi', 'CSS0008310' => 'camsi', 'CSS0013011' => 'camsi', 'CSS0017147' => 'camsi', 'CSS0022970' => 'camsi', 'CSS0025655' => 'camsi', 'CSS0028665' => 'camsi', 'CSS0029117' => 'camsi', 'CSS0032024' => 'camsi', 'CSS0039681' => 'camsi', 'CSS0046516' => 'camsi', 'CSS0050307' => 'camsi', 'DCAR_005871' => 'dca', 'DCAR_007342' => 'dca', 'DCAR_024228' => 'dca', 'DCAR_027277' => 'dca', 'DCAR_030718' => 'dca', 'Dinv20287' => 'din', 'Dinv22461' => 'din', 'Dinv22464' => 'din', 'Dinv29912' => 'din', 'Dinv29913' => 'din', 'Dinv34580' => 'din', 'Dinv34582' => 'din', 'Dinv44632' => 'din', 'Duzib052G0266' => 'dzi', 'Duzib133G0907' => 'dzi', 'Duzib133G1034' => 'dzi', 'Duzib138G0207' => 'dzi', 'Duzib138G0491' => 'dzi', 'Duzib151G0812' => 'dzi', 'Duzib151G1166' => 'dzi', 'Duzib168G0192' => 'dzi', 'Duzib211G0077' => 'dzi', 'Duzib212G0429' => 'dzi', 'Duzib212G0472' => 'dzi', 'ECA233G2617' => 'eca', 'ECA236G4188' => 'eca', 'ECA240G0936' => 'eca', 'ECA240G1129' => 'eca', 'ECA247G0623' => 'eca', 'EL10Ac5g10451' => 'bvu', 'EL10Ac5g10453' => 'bvu', 'EL10Ac5g10894' => 'bvu', 'Eucgr.H00192' => 'egr', 'Eucgr.H00193' => 'egr', 'Eucgr.H00194' => 'egr', 'Eucgr.J01562' => 'egr', 'Eucgr.K03301' => 'egr', 'FAN02G0632' => 'fan', 'FAN05G5378' => 'fan', 'FAN09G3247' => 'fan', 'FAN12G0435' => 'fan', 'FAN12G2426' => 'fan', 'FAN14G1707' => 'fan', 'FAN14G4725' => 'fan', 'FAN15G2071' => 'fan', 'FAN17G3065' => 'fan', 'FAN19G1376' => 'fan', 'FAN20G0354' => 'fan', 'FAN20G2429' => 'fan', 'FAN20G2658' => 'fan', 'FAN24G2343' => 'fan', 'FAN27G2362' => 'fan', 'FAN28G1765' => 'fan', 'FvH4_1g16020' => 'fve', 'FvH4_2g04890' => 'fve', 'FvH4_2g22270' => 'fve', 'FvH4_4g02630' => 'fve', 'FvH4_4g02640' => 'fve', 'FvH4_6g02650' => 'fve', 'Glyma.02G140600' => 'gma', 'Glyma.03G159900' => 'gma', 'Glyma.05G234800' => 'gma', 'Glyma.07G269600' => 'gma', 'Glyma.08G042300' => 'gma', 'Glyma.10G033500' => 'gma', 'Glyma.10G185200' => 'gma', 'Glyma.17G004300' => 'gma', 'Glyma.19G161900' => 'gma', 'Glyma.20G205100' => 'gma', 'Glyma.20G205200' => 'gma', 'Gohir.A01G139101' => 'ghi', 'Gohir.A02G035600' => 'ghi', 'Gohir.A02G117901' => 'ghi', 'Gohir.A07G210100' => 'ghi', 'Gohir.A07G210200' => 'ghi', 'Gohir.A08G061100' => 'ghi', 'Gohir.A09G223000' => 'ghi', 'Gohir.A09G223100' => 'ghi', 'Gohir.A10G113900' => 'ghi', 'Gohir.A10G114000' => 'ghi', 'Gohir.D02G042300' => 'ghi', 'Gohir.D07G216100' => 'ghi', 'Gohir.D07G216200' => 'ghi', 'Gohir.D08G070400' => 'ghi', 'Gohir.D09G225000' => 'ghi', 'Gohir.D09G225100' => 'ghi', 'Gohir.D10G152300' => 'ghi', 'Gohir.D10G153200' => 'ghi', 'Gohir.D11G133701' => 'ghi', 'Gorai.004G074100' => 'gra', 'Gorai.005G046800' => 'gra', 'Gorai.006G246500' => 'gra', 'Gorai.006G246600' => 'gra', 'Gorai.007G142900' => 'gra', 'Gorai.011G171000' => 'gra', 'Gorai.011G171100' => 'gra', 'Gorai.013G104300' => 'gra', 'Gorai.013G104400' => 'gra', 'GSVIVG01000754001' => 'vvi', 'GSVIVG01000756001' => 'vvi', 'GSVIVG01010903001' => 'vvi', 'GSVIVG01017623001' => 'vvi', 'GSVIVG01018113001' => 'vvi', 'GSVIVG01018116001' => 'vvi', 'GSVIVG01018118001' => 'vvi', 'HanXRQChr03g0076211' => 'han', 'HanXRQChr03g0092431' => 'han', 'HanXRQChr03g0092441' => 'han', 'HanXRQChr03g0092591' => 'han', 'HanXRQChr03g0092671' => 'han', 'HanXRQChr03g0092681' => 'han', 'HanXRQChr03g0092691' => 'han', 'HanXRQChr03g0092701' => 'han', 'HanXRQChr03g0092721' => 'han', 'HanXRQChr03g0092731' => 'han', 'HanXRQChr04g0113681' => 'han', 'HanXRQChr10g0281371' => 'han', 'HanXRQChr11g0337141' => 'han', 'HanXRQChr13g0424521' => 'han', 'HanXRQChr13g0424531' => 'han', 'HanXRQChr13g0424541' => 'han', 'HanXRQChr16g0498221' => 'han', 'Haze_04377' => 'cav', 'Haze_11298' => 'cav', 'Haze_24547' => 'cav', 'Haze_24550' => 'cav', 'Haze_26587' => 'cav', 'Hma1.2p1_0650F.1_g195410' => 'hma', 'Hma1.2p1_0893F.1_g233470' => 'hma', 'HPP92_006508' => 'vpl', 'HPP92_024780' => 'vpl', 'Hund02688' => 'sun', 'Hund09380' => 'sun', 'Hund09381' => 'sun', 'Hund09832' => 'sun', 'Hund09833' => 'sun', 'Hund11351' => 'sun', 'Hund11513' => 'sun', 'Lalb_Chr06g0162591' => 'lal', 'Lalb_Chr06g0162601' => 'lal', 'Lalb_Chr06g0169321' => 'lal', 'Lalb_Chr09g0330951' => 'lal', 'Lalb_Chr16g0387631' => 'lal', 'Lalb_Chr21g0306241' => 'lal', 'Lalb_Chr25g0290051' => 'lal', 'Lalb_Chr25g0290061' => 'lal', 'Lalb_Chr25g0290071' => 'lal', 'Lj1g0003876' => 'lja', 'Lj1P1207T36' => 'lonja', 'Lj2C1156G12' => 'lonja', 'Lj3A793G39' => 'lonja', 'Lj3C580G2' => 'lonja', 'Lj3C780G2' => 'lonja', 'Lj3C780T4' => 'lonja', 'Lj3C793G9' => 'lonja', 'Lj4g0012960' => 'lja', 'Lj5g0021252' => 'lja', 'Lj5g0021484' => 'lja', 'Lj5g0024528' => 'lja', 'Lj6A399T12' => 'lonja', 'Lj6A656G65' => 'lonja', 'Lsat_1_v5_gn_3_125500' => 'lsa', 'Lsat_1_v5_gn_3_125540' => 'lsa', 'Lsat_1_v5_gn_5_72701' => 'lsa', 'Lsat_1_v5_gn_8_91560' => 'lsa', 'Lsat_1_v5_gn_9_9640' => 'lsa', 'Manes.01G200600' => 'mes', 'Manes.01G200700' => 'mes', 'Manes.03G168900' => 'mes', 'Manes.03G169000' => 'mes', 'Manes.05G085801' => 'mes', 'Manes.05G086200' => 'mes', 'Manes.15G036700' => 'mes', 'Manes.15G036900' => 'mes', 'Mapoly0004s0172' => 'mpo', 'Mapoly0023s0001' => 'mpo', 'Mapoly0142s0012' => 'mpo', 'MBI01_g32854_MAGBIO' => 'mbi', 'MBI11_g24427_MAGBIO' => 'mbi', 'MBI11_g47319_MAGBIO' => 'mbi', 'MCO01G433' => 'mco', 'MD00G1187800' => 'mdo', 'MD04G1226500' => 'mdo', 'MD05G1203900' => 'mdo', 'MD10G1191100' => 'mdo', 'MD12G1243500' => 'mdo', 'MD13G1207000' => 'mdo', 'MD13G1207100' => 'mdo', 'MD16G1208600' => 'mdo', 'Medtr1g050352' => 'mtr', 'Medtr1g070385' => 'mtr', 'Medtr1g070450' => 'mtr', 'Medtr1g075200' => 'mtr', 'Medtr1g075250' => 'mtr', 'Medtr1g075260' => 'mtr', 'Medtr1g475250' => 'mtr', 'Medtr4g075450' => 'mtr', 'Medtr7g096300' => 'mtr', 'Medtr8g105110' => 'mtr', 'MELO3C006470.2' => 'cme', 'MELO3C006471.2' => 'cme', 'MELO3C020772.2' => 'cme', 'MELO3C026780.2' => 'cme', 'MELO3C026781.2' => 'cme', 'Migut.D00390' => 'egut', 'Migut.G00435' => 'egut', 'Migut.G00436' => 'egut', 'Migut.G00718' => 'egut', 'MSTRG.21891' => 'ama', 'MSTRG.26910' => 'ama', 'MSTRG.4099' => 'ama', 'MSTRG.9925' => 'ama', 'Nitab4.5_0000165g0010' => 'nta', 'Nitab4.5_0000209g0180' => 'nta', 'Nitab4.5_0000244g0440' => 'nta', 'Nitab4.5_0000525g0220' => 'nta', 'Nitab4.5_0001597g0020' => 'nta', 'Nitab4.5_0001878g0040' => 'nta', 'Nitab4.5_0001878g0060' => 'nta', 'Nitab4.5_0002838g0100' => 'nta', 'Nitab4.5_0002838g0120' => 'nta', 'Nitab4.5_0004798g0030' => 'nta', 'Nitab4.5_0005420g0010' => 'nta', 'Nitab4.5_0005507g0010' => 'nta', 'Nitab4.5_0005574g0020' => 'nta', 'Nitab4.5_0005838g0010' => 'nta', 'Nitab4.5_0010580g0020' => 'nta', 'Nn1g02599' => 'nnu', 'Nn1g02608' => 'nnu', 'Nn3g17742' => 'nnu', 'Nn3g19534' => 'nnu', 'Nn3g19535' => 'nnu', 'Oeu008790.1' => 'oeu', 'Oeu008792.1' => 'oeu', 'Oeu032590.1' => 'oeu', 'Oeu035349.1' => 'oeu', 'Oeu049791.1' => 'oeu', 'Os01g0774500' => 'osa', 'Os03g0628800' => 'osa', 'Os03g0798600' => 'osa', 'Os05g0508800' => 'osa', 'Peaxi162Scf00036g02018' => 'pax', 'Peaxi162Scf00578g00032' => 'pax', 'Peaxi162Scf00578g00317' => 'pax', 'Peaxi162Scf00785g00114' => 'pax', 'Peaxi162Scf00813g00119' => 'pax', 'Peaxi162Scf00906g00227' => 'pax', 'PGR004G0875' => 'pgr', 'PGR004G2424' => 'pgr', 'PGR031G1239' => 'pgr', 'PGR031G2474' => 'pgr', 'PGR044G0423' => 'pgr', 'PGSC0003DMG400001128' => 'stu', 'PGSC0003DMG400007336' => 'stu', 'PGSC0003DMG400016318' => 'stu', 'PGSC0003DMG400016319' => 'stu', 'PGSC0003DMG400018074' => 'stu', 'Phvul.001G157700' => 'pvu', 'Phvul.002G148550' => 'pvu', 'Phvul.002G320200' => 'pvu', 'Phvul.003G089200' => 'pvu', 'Phvul.007G126000' => 'pvu', 'Phvul.007G126100' => 'pvu', 'Phvul.007G178000' => 'pvu', 'Phvul.007G178200' => 'pvu', 'Potri.002G043000' => 'ptr', 'Potri.002G043200' => 'ptr', 'Potri.003G123750' => 'ptr', 'Potri.005G055401' => 'ptr', 'Potri.005G219700' => 'ptr', 'Potri.005G220000' => 'ptr', 'Potri.008G161901' => 'ptr', 'Potri.008G162000' => 'ptr', 'Potri.008G162400' => 'ptr', 'Potri.010G076900' => 'ptr', 'Pp3c12_9180' => 'ppa', 'Pp3c13_19770' => 'ppa', 'Pp3c14_22950' => 'ppa', 'Pp3c16_12160' => 'ppa', 'Pp3c27_7820' => 'ppa', 'Pp3c2_3490' => 'ppa', 'Pp3c3_23700' => 'ppa', 'Pp3c3_36520' => 'ppa', 'Pp3c4_15250' => 'ppa', 'PRCOL_00007002' => 'pco', 'Prupe.1G030600' => 'ppe', 'Prupe.1G030700' => 'ppe', 'Prupe.6G345200' => 'ppe', 'Prupe.8G230300' => 'ppe', 'Prupe.8G230500' => 'ppe', 'Psat3g059600' => 'psa', 'Psat5g200920' => 'psa', 'Psat6g056440' => 'psa', 'Psat6g057360' => 'psa', 'Psat6g134120' => 'psa', 'Psat6g134160' => 'psa', 'Psat7g008640' => 'psa', 'Psat7g185240' => 'psa', 'PSO017G1330' => 'pso', 'PSO063G6097' => 'pso', 'PSO170G0835' => 'pso', 'PSO170G2499' => 'pso', 'PSO210G5058' => 'pso', 'PSO210G6154' => 'pso', 'PSO585G0031' => 'pso', 'PSO832G0264' => 'pso', 'PSO832G4288' => 'pso', 'QL03p027355' => 'qlo', 'QL03p027430' => 'qlo', 'QL04p081380' => 'qlo', 'QL06p015642' => 'qlo', 'QL06p015650' => 'qlo', 'QL06p015686' => 'qlo', 'QL12p042927' => 'qlo', 'QL93p1863_0035' => 'qlo', 'RcHm_v2.0_Chr3g0450581' => 'rch', 'RcHm_v2.0_Chr4g0390371' => 'rch', 'RcHm_v2.0_Chr4g0390381' => 'rch', 'RcHm_v2.0_Chr4g0390491' => 'rch', 'RcHm_v2.0_Chr4g0390501' => 'rch', 'RcHm_v2.0_Chr6g0289231' => 'rch', 'Rhsim04G0190400' => 'rsi', 'Rhsim04G0190500' => 'rsi', 'Rhsim04G0190600' => 'rsi', 'Rhsim13G0031400' => 'rsi', 'Rhsim13G0165600' => 'rsi', 'RhsimUnG0114600' => 'rsi', 'RhsimUnG0114700' => 'rsi', 'Sabra02G0034800' => 'sbr', 'Sabra02G0035100' => 'sbr', 'Sabra05G0168600' => 'sbr', 'Sabra05G0168800' => 'sbr', 'Sabra08G0123700' => 'sbr', 'Sabra10G0031900' => 'sbr', 'Sabra13G0039000' => 'sbr', 'SalBow2G0782' => 'sbo', 'SalBow2G1403' => 'sbo', 'SalBow4G0074' => 'sbo', 'SalBow4G2635' => 'sbo', 'SalBow5G3010' => 'sbo', 'Sc05g0000870' => 'sci', 'Sc05g0000890' => 'sci', 'Sc13g0005000' => 'sci', 'Sc13g0005030' => 'sci', 'Sc19g0003790' => 'sci', 'Sc19g0003800' => 'sci', 'Sed0003467' => 'sed', 'Sed0009355' => 'sed', 'Sed0009894' => 'sed', 'Sed0011972' => 'sed', 'Sed0021483' => 'sed', 'Sed0021750' => 'sed', 'Sed0026279' => 'sed', 'SEGI_05312' => 'sgi', 'SEGI_10112' => 'sgi', 'SEGI_15835' => 'sgi', 'SEGI_30386' => 'sgi', 'SEGI_34122' => 'sgi', 'SEGI_35063' => 'sgi', 'SGA_v2.0_scaffold101G29794' => 'sas', 'SGA_v2.0_scaffold1G00573' => 'sas', 'SGA_v2.0_scaffold79G25637' => 'sas', 'SGA_v2.0_scaffold88G27283' => 'sas', 'SGA_v2.0_scaffold88G27285' => 'sas', 'SGA_v2.0_scaffold88G27331' => 'sas', 'SHI09937' => 'shi', 'SMO119G0302' => 'smo', 'SMO137G0231' => 'smo', 'SMO367G1151' => 'smo', 'Solyc02g082000.3' => 'sly', 'Solyc06g031670.3' => 'sly', 'Solyc06g053810.3' => 'sly', 'Solyc07g025457.1' => 'sly', 'Solyc08g059740.1' => 'sly', 'Solyc08g059750.3' => 'sly', 'Solyc09g083370.3' => 'sly', 'Solyc12g038950.3' => 'sly', 'Sopen02g026630' => 'spe', 'Sopen06g018930' => 'spe', 'Sopen06g018940' => 'spe', 'Sopen08g009460' => 'spe', 'Sopen09g032290' => 'spe', 'Sp1g03080' => 'spa', 'Sp1g03090' => 'spa', 'Sp1g05480' => 'spa', 'Sp2g07860' => 'spa', 'Sp2g08430' => 'spa', 'Sp2g08440' => 'spa', 'Sp2g26200' => 'spa', 'Sp4g13170' => 'spa', 'Sp6g33840' => 'spa', 'SpUn1204_0010' => 'spa', 'TAR365G0908' => 'tar', 'TAR381G1270' => 'tar', 'TAR381G1651' => 'tar', 'TAR625G1131' => 'tar', 'TAR633G0962' => 'tar', 'TAR633G1729' => 'tar', 'TAR633G1864' => 'tar', 'TAR636G0221' => 'tar', 'TAR636G0314' => 'tar', 'TAR636G3202' => 'tar', 'THA.LOC104800805' => 'tha', 'THA.LOC104801096' => 'tha', 'THA.LOC104801555' => 'tha', 'THA.LOC104808491' => 'tha', 'THA.LOC104808595' => 'tha', 'THA.LOC104815985' => 'tha', 'THA.LOC104822250' => 'tha', 'THA.LOC104826071' => 'tha', 'Thecc.01G265200' => 'tca', 'Thecc.01G265300' => 'tca', 'Thecc.01G265700' => 'tca', 'Thecc.03G109100' => 'tca', 'Thecc.04G245900' => 'tca', 'Thecc.04G246000' => 'tca', 'Thhalv10003334m.g' => 'esa', 'Thhalv10005508m.g' => 'esa', 'Thhalv10005643m.g' => 'esa', 'Thhalv10007316m.g' => 'esa', 'Thhalv10009006m.g' => 'esa', 'Thhalv10009309m.g' => 'esa', 'Thhalv10014917m.g' => 'esa', 'Thhalv10014919m.g' => 'esa', 'Thhalv10015393m.g' => 'esa', 'Thhalv10016515m.g' => 'esa', 'Thhalv10029242m.g' => 'esa', 'TPR.G16654' => 'tpr', 'TPR.G20589' => 'tpr', 'TPR.G23029' => 'tpr', 'TPR.G27731' => 'tpr', 'TPR.G28889' => 'tpr', 'TPR.G28899' => 'tpr', 'TPR.G30846' => 'tpr', 'TPR.G5452' => 'tpr', 'TPR.G5713' => 'tpr', 'TPR.G9046' => 'tpr', 'TPR.G9061' => 'tpr', 'TWI09G1075' => 'twi', 'TWI12G0806' => 'twi', 'TWI18G0108' => 'twi', 'TWI53G1361' => 'twi', 'TWI73G0185' => 'twi', 'TWI73G0427' => 'twi', 'unitig_37.g12001' => 'ugi', 'unitig_747.g21660' => 'ugi', 'unitig_748.g7232' => 'ugi', 'unitig_748.g7315' => 'ugi', 'unitig_85.g27262' => 'ugi', 'unitig_92.g28220' => 'ugi', 'vmacro02632' => 'vma', 'vmacro08410' => 'vma', 'vmacro08411' => 'vma', 'vmacro15407' => 'vma', 'VMungo0251G3619' => 'vmu', 'VMungo0720G1204' => 'vmu', 'VMungo0720G1918' => 'vmu', 'VMungo0720G2387' => 'vmu', 'VMungo0720G2961' => 'vmu', 'VMungo1215G2154' => 'vmu', 'VMungo1383G2411' => 'vmu', 'Zm00001eb051130' => 'zma', 'Zm00001eb116830' => 'zma', 'Zm00001eb116850' => 'zma', 'Zm00001eb151740' => 'zma', 'Zm00001eb292360' => 'zma', 'Zm00001eb301640' => 'zma' ), 'gf_id' => 'HOM05D000856', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000856' ), 'data_identifier' => 'HOM05D000856', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000856', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p00010' => 'bna', 'A03p04160' => 'bna', 'A03p17160' => 'bna', 'A04p23370' => 'bna', 'A05p14860' => 'bna', 'A08p37020' => 'bna', 'A09p08050' => 'bna', 'A09p66800' => 'bna', 'A09p67940' => 'bna', 'A10p02680' => 'bna', 'A10p05320' => 'bna', 'Aa31LG1G20560' => 'aar', 'Aa31LG1G20610' => 'aar', 'Aa31LG1G7810' => 'aar', 'Aa31LG5G3590' => 'aar', 'Aa31LG5G6140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3819' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4683' => 'aag', 'Actinidia04480' => 'ach', 'Actinidia05466' => 'ach', 'Actinidia08445' => 'ach', 'Actinidia21170' => 'ach', 'Actinidia24812' => 'ach', 'Actinidia24951' => 'ach', 'Actinidia40088' => 'ach', 'Ah.02g111660' => 'amhyb', 'Ah.11g048900' => 'amhyb', 'Ah.11g049910' => 'amhyb', 'AL1G13870' => 'aly', 'AL1G13880' => 'aly', 'AL1G16760' => 'aly', 'AL390U10020' => 'aly', 'AL4G25520' => 'aly', 'AL6G19890' => 'aly', 'AL6G19900' => 'aly', 'AL6G19910' => 'aly', 'AL8G40100' => 'aly', 'Aqoxy2G03562' => 'aox', 'Aqoxy5G00316' => 'aox', 'Aqoxy5G00926' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1628KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1H403S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2FU6SJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.882I6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8YRY2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YN1SN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AF70II' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZA8L1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F916KL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHRD8H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KTZ8QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S22EMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8M29T' => 'arhy', 'AT1G04270' => 'ath', 'AT1G04280' => 'ath', 'AT1G06750' => 'ath', 'AT1G33850' => 'ath', 'AT2G30630' => 'ath', 'AT5G09490' => 'ath', 'AT5G09500' => 'ath', 'AT5G09510' => 'ath', 'AT5G43640' => 'ath', 'AT5G63070' => 'ath', 'ATR0605G315' => 'atr', 'Atru.chr11.175' => 'acertr', 'Atru.chr11.653' => 'acertr', 'Atru.chr3.1616' => 'acertr', 'Atru.chr4.2230' => 'acertr', 'Atru.chr4.2232' => 'acertr', 'Atru.chr5.1598' => 'acertr', 'Atru.chr5.1600' => 'acertr', 'Atru.chr5.2188' => 'acertr', 'AUR62008326' => 'cqu', 'AUR62011922' => 'cqu', 'AUR62011924' => 'cqu', 'AUR62021771' => 'cqu', 'AUR62032237' => 'cqu', 'AUR62032240' => 'cqu', 'BcaB01g05572' => 'bca', 'BcaB02g10337' => 'bca', 'BcaB04g19944' => 'bca', 'BcaB05g21548' => 'bca', 'BcaB05g21549' => 'bca', 'BcaB05g23227' => 'bca', 'BcaB06g26256' => 'bca', 'BcaB06g26257' => 'bca', 'BcaB06g28379' => 'bca', 'BcaC02g11159' => 'bca', 'BcaC03g13258' => 'bca', 'BcaC03g13259' => 'bca', 'BcaC05g24456' => 'bca', 'BcaC05g24457' => 'bca', 'BcaC07g36922' => 'bca', 'BcaC07g36923' => 'bca', 'BcaC07g42050' => 'bca', 'BcaC07g42176' => 'bca', 'BcaC07g42195' => 'bca', 'BcaC07g42196' => 'bca', 'BcaNung06674' => 'bca', 'BolC2t06351H' => 'bol', 'BolC2t06352H' => 'bol', 'BolC3t12993H' => 'bol', 'BolC4t23525H' => 'bol', 'BolC4t27475H' => 'bol', 'BolC5t29025H' => 'bol', 'BolC5t29026H' => 'bol', 'BolC8t46898H' => 'bol', 'BolC8t46899H' => 'bol', 'BolC8t52630H' => 'bol', 'BolC8t52765H' => 'bol', 'BolC9t53824H' => 'bol', 'BraA03t09760Z' => 'bra', 'BraA03t10990Z' => 'bra', 'BraA05t20413Z' => 'bra', 'BraA08t35602Z' => 'bra', 'BraA09t36458Z' => 'bra', 'BraA09t42018Z' => 'bra', 'BraA09t42129Z' => 'bra', 'BraA10t42536Z' => 'bra', 'BraA10t42537Z' => 'bra', 'C01p10690' => 'bna', 'C02p03890' => 'bna', 'C02p03900' => 'bna', 'C03p04620' => 'bna', 'C04p19870' => 'bna', 'C04p59670' => 'bna', 'C05p02460' => 'bna', 'C05p02470' => 'bna', 'C08p00980' => 'bna', 'C08p00990' => 'bna', 'C08p51030' => 'bna', 'C08p52360' => 'bna', 'C09p09120' => 'bna', 'CAN.G19.15' => 'can', 'CAN.G251.10' => 'can', 'CAN.G251.9' => 'can', 'CAN.G398.24' => 'can', 'CAN.G410.32' => 'can', 'CAN.G881.2' => 'can', 'CANSAT01G3025' => 'cansat', 'CANSAT78G1211' => 'cansat', 'CANSAT78G1218' => 'cansat', 'CANSAT78G1521' => 'cansat', 'CANSAT78G1670' => 'cansat', 'CARHR003600' => 'chi', 'CARHR003610' => 'chi', 'CARHR006290' => 'chi', 'CARHR006430' => 'chi', 'CARHR124110' => 'chi', 'CARHR203870' => 'chi', 'CARHR203880' => 'chi', 'CARHR203890' => 'chi', 'CARHR276880' => 'chi', 'Carub.0001s0346' => 'cru', 'Carub.0001s0347' => 'cru', 'Carub.0001s0607' => 'cru', 'Carub.0003s2768' => 'cru', 'Carub.0003s2769' => 'cru', 'Carub.0004s1178' => 'cru', 'Carub.0006s0806' => 'cru', 'Carub.0006s0807' => 'cru', 'Carub.0006s0808' => 'cru', 'Carub.0008s0501' => 'cru', 'Carub.0008s2379' => 'cru', 'Ca_08655_v3' => 'car', 'Ca_08922_v3' => 'car', 'Ca_08923_v3' => 'car', 'Ca_09119_v3' => 'car', 'Ca_09703_v3' => 'car', 'Ca_09705_v3' => 'car', 'Ca_09835_v3' => 'car', 'Ca_26403_v3' => 'car', 'Ca_30719_v3' => 'car', 'CBR_g17958' => 'cbr', 'CBR_g40516' => 'cbr', 'Cc00_g05350' => 'ccan', 'Cc01_g18690' => 'ccan', 'Cc03_g04830' => 'ccan', 'Cc03_g04850' => 'ccan', 'CDE02G4469' => 'cde', 'CDE06G0883' => 'cde', 'CDE06G1295' => 'cde', 'CDE06G1390' => 'cde', 'CDE07G0584' => 'cde', 'CDE07G1084' => 'cde', 'CDE08G1259' => 'cde', 'Cfa002341' => 'cfa', 'Cfa024337' => 'cfa', 'Ciclev10004749m.g' => 'ccl', 'Ciclev10006127m.g' => 'ccl', 'Ciclev10019720m.g' => 'ccl', 'Ciclev10022652m.g' => 'ccl', 'CiPaw.01G190400' => 'cil', 'CiPaw.01G190500' => 'cil', 'CiPaw.02G116400' => 'cil', 'CiPaw.02G116500' => 'cil', 'CiPaw.04G183000' => 'cil', 'CiPaw.04G183300' => 'cil', 'ClCG05G004610' => 'cla', 'ClCG05G004620' => 'cla', 'ClCG06G006730' => 'cla', 'ClCG06G006740' => 'cla', 'ClCG11G003690' => 'cla', 'COL.COLO4_08276' => 'col', 'COL.COLO4_08277' => 'col', 'COL.COLO4_15787' => 'col', 'COL.COLO4_15789' => 'col', 'Cpa.g.c44815' => 'cpa', 'Cpa.g.sc52.144' => 'cpa', 'Cpa.g.sc58.46' => 'cpa', 'Cpa.g.sc58.47' => 'cpa', 'Cre08.g360900' => 'cre', 'CsaV3_2G013030' => 'csa', 'CsaV3_2G013050' => 'csa', 'CsaV3_2G015620' => 'csa', 'CsaV3_3G012590' => 'csa', 'CsaV3_3G012600' => 'csa', 'CSS0001641' => 'camsi', 'CSS0008310' => 'camsi', 'CSS0013011' => 'camsi', 'CSS0017147' => 'camsi', 'CSS0022970' => 'camsi', 'CSS0025655' => 'camsi', 'CSS0028665' => 'camsi', 'CSS0029117' => 'camsi', 'CSS0032024' => 'camsi', 'CSS0039681' => 'camsi', 'CSS0046516' => 'camsi', 'CSS0050307' => 'camsi', 'DCAR_005871' => 'dca', 'DCAR_007342' => 'dca', 'DCAR_024228' => 'dca', 'DCAR_027277' => 'dca', 'DCAR_030718' => 'dca', 'Dinv20287' => 'din', 'Dinv22461' => 'din', 'Dinv22464' => 'din', 'Dinv29912' => 'din', 'Dinv29913' => 'din', 'Dinv34580' => 'din', 'Dinv34582' => 'din', 'Dinv44632' => 'din', 'Duzib052G0266' => 'dzi', 'Duzib133G0907' => 'dzi', 'Duzib133G1034' => 'dzi', 'Duzib138G0207' => 'dzi', 'Duzib138G0491' => 'dzi', 'Duzib151G0812' => 'dzi', 'Duzib151G1166' => 'dzi', 'Duzib168G0192' => 'dzi', 'Duzib211G0077' => 'dzi', 'Duzib212G0429' => 'dzi', 'Duzib212G0472' => 'dzi', 'ECA233G2617' => 'eca', 'ECA236G4188' => 'eca', 'ECA240G0936' => 'eca', 'ECA240G1129' => 'eca', 'ECA247G0623' => 'eca', 'EL10Ac5g10451' => 'bvu', 'EL10Ac5g10453' => 'bvu', 'EL10Ac5g10894' => 'bvu', 'Eucgr.H00192' => 'egr', 'Eucgr.H00193' => 'egr', 'Eucgr.H00194' => 'egr', 'Eucgr.J01562' => 'egr', 'Eucgr.K03301' => 'egr', 'FAN02G0632' => 'fan', 'FAN05G5378' => 'fan', 'FAN09G3247' => 'fan', 'FAN12G0435' => 'fan', 'FAN12G2426' => 'fan', 'FAN14G1707' => 'fan', 'FAN14G4725' => 'fan', 'FAN15G2071' => 'fan', 'FAN17G3065' => 'fan', 'FAN19G1376' => 'fan', 'FAN20G0354' => 'fan', 'FAN20G2429' => 'fan', 'FAN20G2658' => 'fan', 'FAN24G2343' => 'fan', 'FAN27G2362' => 'fan', 'FAN28G1765' => 'fan', 'FvH4_1g16020' => 'fve', 'FvH4_2g04890' => 'fve', 'FvH4_2g22270' => 'fve', 'FvH4_4g02630' => 'fve', 'FvH4_4g02640' => 'fve', 'FvH4_6g02650' => 'fve', 'Glyma.02G140600' => 'gma', 'Glyma.03G159900' => 'gma', 'Glyma.05G234800' => 'gma', 'Glyma.07G269600' => 'gma', 'Glyma.08G042300' => 'gma', 'Glyma.10G033500' => 'gma', 'Glyma.10G185200' => 'gma', 'Glyma.17G004300' => 'gma', 'Glyma.19G161900' => 'gma', 'Glyma.20G205100' => 'gma', 'Glyma.20G205200' => 'gma', 'Gohir.A01G139101' => 'ghi', 'Gohir.A02G035600' => 'ghi', 'Gohir.A02G117901' => 'ghi', 'Gohir.A07G210100' => 'ghi', 'Gohir.A07G210200' => 'ghi', 'Gohir.A08G061100' => 'ghi', 'Gohir.A09G223000' => 'ghi', 'Gohir.A09G223100' => 'ghi', 'Gohir.A10G113900' => 'ghi', 'Gohir.A10G114000' => 'ghi', 'Gohir.D02G042300' => 'ghi', 'Gohir.D07G216100' => 'ghi', 'Gohir.D07G216200' => 'ghi', 'Gohir.D08G070400' => 'ghi', 'Gohir.D09G225000' => 'ghi', 'Gohir.D09G225100' => 'ghi', 'Gohir.D10G152300' => 'ghi', 'Gohir.D10G153200' => 'ghi', 'Gohir.D11G133701' => 'ghi', 'Gorai.004G074100' => 'gra', 'Gorai.005G046800' => 'gra', 'Gorai.006G246500' => 'gra', 'Gorai.006G246600' => 'gra', 'Gorai.007G142900' => 'gra', 'Gorai.011G171000' => 'gra', 'Gorai.011G171100' => 'gra', 'Gorai.013G104300' => 'gra', 'Gorai.013G104400' => 'gra', 'GSVIVG01000754001' => 'vvi', 'GSVIVG01000756001' => 'vvi', 'GSVIVG01010903001' => 'vvi', 'GSVIVG01017623001' => 'vvi', 'GSVIVG01018113001' => 'vvi', 'GSVIVG01018116001' => 'vvi', 'GSVIVG01018118001' => 'vvi', 'HanXRQChr03g0076211' => 'han', 'HanXRQChr03g0092431' => 'han', 'HanXRQChr03g0092441' => 'han', 'HanXRQChr03g0092591' => 'han', 'HanXRQChr03g0092671' => 'han', 'HanXRQChr03g0092681' => 'han', 'HanXRQChr03g0092691' => 'han', 'HanXRQChr03g0092701' => 'han', 'HanXRQChr03g0092721' => 'han', 'HanXRQChr03g0092731' => 'han', 'HanXRQChr04g0113681' => 'han', 'HanXRQChr10g0281371' => 'han', 'HanXRQChr11g0337141' => 'han', 'HanXRQChr13g0424521' => 'han', 'HanXRQChr13g0424531' => 'han', 'HanXRQChr13g0424541' => 'han', 'HanXRQChr16g0498221' => 'han', 'Haze_04377' => 'cav', 'Haze_11298' => 'cav', 'Haze_24547' => 'cav', 'Haze_24550' => 'cav', 'Haze_26587' => 'cav', 'Hma1.2p1_0650F.1_g195410' => 'hma', 'Hma1.2p1_0893F.1_g233470' => 'hma', 'HPP92_006508' => 'vpl', 'HPP92_024780' => 'vpl', 'Hund02688' => 'sun', 'Hund09380' => 'sun', 'Hund09381' => 'sun', 'Hund09832' => 'sun', 'Hund09833' => 'sun', 'Hund11351' => 'sun', 'Hund11513' => 'sun', 'Lalb_Chr06g0162591' => 'lal', 'Lalb_Chr06g0162601' => 'lal', 'Lalb_Chr06g0169321' => 'lal', 'Lalb_Chr09g0330951' => 'lal', 'Lalb_Chr16g0387631' => 'lal', 'Lalb_Chr21g0306241' => 'lal', 'Lalb_Chr25g0290051' => 'lal', 'Lalb_Chr25g0290061' => 'lal', 'Lalb_Chr25g0290071' => 'lal', 'Lj1g0003876' => 'lja', 'Lj1P1207T36' => 'lonja', 'Lj2C1156G12' => 'lonja', 'Lj3A793G39' => 'lonja', 'Lj3C580G2' => 'lonja', 'Lj3C780G2' => 'lonja', 'Lj3C780T4' => 'lonja', 'Lj3C793G9' => 'lonja', 'Lj4g0012960' => 'lja', 'Lj5g0021252' => 'lja', 'Lj5g0021484' => 'lja', 'Lj5g0024528' => 'lja', 'Lj6A399T12' => 'lonja', 'Lj6A656G65' => 'lonja', 'Lsat_1_v5_gn_3_125500' => 'lsa', 'Lsat_1_v5_gn_3_125540' => 'lsa', 'Lsat_1_v5_gn_5_72701' => 'lsa', 'Lsat_1_v5_gn_8_91560' => 'lsa', 'Lsat_1_v5_gn_9_9640' => 'lsa', 'Manes.01G200600' => 'mes', 'Manes.01G200700' => 'mes', 'Manes.03G168900' => 'mes', 'Manes.03G169000' => 'mes', 'Manes.05G085801' => 'mes', 'Manes.05G086200' => 'mes', 'Manes.15G036700' => 'mes', 'Manes.15G036900' => 'mes', 'Mapoly0004s0172' => 'mpo', 'Mapoly0023s0001' => 'mpo', 'Mapoly0142s0012' => 'mpo', 'MBI01_g32854_MAGBIO' => 'mbi', 'MBI11_g24427_MAGBIO' => 'mbi', 'MBI11_g47319_MAGBIO' => 'mbi', 'MCO01G433' => 'mco', 'MD00G1187800' => 'mdo', 'MD04G1226500' => 'mdo', 'MD05G1203900' => 'mdo', 'MD10G1191100' => 'mdo', 'MD12G1243500' => 'mdo', 'MD13G1207000' => 'mdo', 'MD13G1207100' => 'mdo', 'MD16G1208600' => 'mdo', 'Medtr1g050352' => 'mtr', 'Medtr1g070385' => 'mtr', 'Medtr1g070450' => 'mtr', 'Medtr1g075200' => 'mtr', 'Medtr1g075250' => 'mtr', 'Medtr1g075260' => 'mtr', 'Medtr1g475250' => 'mtr', 'Medtr4g075450' => 'mtr', 'Medtr7g096300' => 'mtr', 'Medtr8g105110' => 'mtr', 'MELO3C006470.2' => 'cme', 'MELO3C006471.2' => 'cme', 'MELO3C020772.2' => 'cme', 'MELO3C026780.2' => 'cme', 'MELO3C026781.2' => 'cme', 'Migut.D00390' => 'egut', 'Migut.G00435' => 'egut', 'Migut.G00436' => 'egut', 'Migut.G00718' => 'egut', 'MSTRG.21891' => 'ama', 'MSTRG.26910' => 'ama', 'MSTRG.4099' => 'ama', 'MSTRG.9925' => 'ama', 'Nitab4.5_0000165g0010' => 'nta', 'Nitab4.5_0000209g0180' => 'nta', 'Nitab4.5_0000244g0440' => 'nta', 'Nitab4.5_0000525g0220' => 'nta', 'Nitab4.5_0001597g0020' => 'nta', 'Nitab4.5_0001878g0040' => 'nta', 'Nitab4.5_0001878g0060' => 'nta', 'Nitab4.5_0002838g0100' => 'nta', 'Nitab4.5_0002838g0120' => 'nta', 'Nitab4.5_0004798g0030' => 'nta', 'Nitab4.5_0005420g0010' => 'nta', 'Nitab4.5_0005507g0010' => 'nta', 'Nitab4.5_0005574g0020' => 'nta', 'Nitab4.5_0005838g0010' => 'nta', 'Nitab4.5_0010580g0020' => 'nta', 'Nn1g02599' => 'nnu', 'Nn1g02608' => 'nnu', 'Nn3g17742' => 'nnu', 'Nn3g19534' => 'nnu', 'Nn3g19535' => 'nnu', 'Oeu008790.1' => 'oeu', 'Oeu008792.1' => 'oeu', 'Oeu032590.1' => 'oeu', 'Oeu035349.1' => 'oeu', 'Oeu049791.1' => 'oeu', 'Os01g0774500' => 'osa', 'Os03g0628800' => 'osa', 'Os03g0798600' => 'osa', 'Os05g0508800' => 'osa', 'Peaxi162Scf00036g02018' => 'pax', 'Peaxi162Scf00578g00032' => 'pax', 'Peaxi162Scf00578g00317' => 'pax', 'Peaxi162Scf00785g00114' => 'pax', 'Peaxi162Scf00813g00119' => 'pax', 'Peaxi162Scf00906g00227' => 'pax', 'PGR004G0875' => 'pgr', 'PGR004G2424' => 'pgr', 'PGR031G1239' => 'pgr', 'PGR031G2474' => 'pgr', 'PGR044G0423' => 'pgr', 'PGSC0003DMG400001128' => 'stu', 'PGSC0003DMG400007336' => 'stu', 'PGSC0003DMG400016318' => 'stu', 'PGSC0003DMG400016319' => 'stu', 'PGSC0003DMG400018074' => 'stu', 'Phvul.001G157700' => 'pvu', 'Phvul.002G148550' => 'pvu', 'Phvul.002G320200' => 'pvu', 'Phvul.003G089200' => 'pvu', 'Phvul.007G126000' => 'pvu', 'Phvul.007G126100' => 'pvu', 'Phvul.007G178000' => 'pvu', 'Phvul.007G178200' => 'pvu', 'Potri.002G043000' => 'ptr', 'Potri.002G043200' => 'ptr', 'Potri.003G123750' => 'ptr', 'Potri.005G055401' => 'ptr', 'Potri.005G219700' => 'ptr', 'Potri.005G220000' => 'ptr', 'Potri.008G161901' => 'ptr', 'Potri.008G162000' => 'ptr', 'Potri.008G162400' => 'ptr', 'Potri.010G076900' => 'ptr', 'Pp3c12_9180' => 'ppa', 'Pp3c13_19770' => 'ppa', 'Pp3c14_22950' => 'ppa', 'Pp3c16_12160' => 'ppa', 'Pp3c27_7820' => 'ppa', 'Pp3c2_3490' => 'ppa', 'Pp3c3_23700' => 'ppa', 'Pp3c3_36520' => 'ppa', 'Pp3c4_15250' => 'ppa', 'PRCOL_00007002' => 'pco', 'Prupe.1G030600' => 'ppe', 'Prupe.1G030700' => 'ppe', 'Prupe.6G345200' => 'ppe', 'Prupe.8G230300' => 'ppe', 'Prupe.8G230500' => 'ppe', 'Psat3g059600' => 'psa', 'Psat5g200920' => 'psa', 'Psat6g056440' => 'psa', 'Psat6g057360' => 'psa', 'Psat6g134120' => 'psa', 'Psat6g134160' => 'psa', 'Psat7g008640' => 'psa', 'Psat7g185240' => 'psa', 'PSO017G1330' => 'pso', 'PSO063G6097' => 'pso', 'PSO170G0835' => 'pso', 'PSO170G2499' => 'pso', 'PSO210G5058' => 'pso', 'PSO210G6154' => 'pso', 'PSO585G0031' => 'pso', 'PSO832G0264' => 'pso', 'PSO832G4288' => 'pso', 'QL03p027355' => 'qlo', 'QL03p027430' => 'qlo', 'QL04p081380' => 'qlo', 'QL06p015642' => 'qlo', 'QL06p015650' => 'qlo', 'QL06p015686' => 'qlo', 'QL12p042927' => 'qlo', 'QL93p1863_0035' => 'qlo', 'RcHm_v2.0_Chr3g0450581' => 'rch', 'RcHm_v2.0_Chr4g0390371' => 'rch', 'RcHm_v2.0_Chr4g0390381' => 'rch', 'RcHm_v2.0_Chr4g0390491' => 'rch', 'RcHm_v2.0_Chr4g0390501' => 'rch', 'RcHm_v2.0_Chr6g0289231' => 'rch', 'Rhsim04G0190400' => 'rsi', 'Rhsim04G0190500' => 'rsi', 'Rhsim04G0190600' => 'rsi', 'Rhsim13G0031400' => 'rsi', 'Rhsim13G0165600' => 'rsi', 'RhsimUnG0114600' => 'rsi', 'RhsimUnG0114700' => 'rsi', 'Sabra02G0034800' => 'sbr', 'Sabra02G0035100' => 'sbr', 'Sabra05G0168600' => 'sbr', 'Sabra05G0168800' => 'sbr', 'Sabra08G0123700' => 'sbr', 'Sabra10G0031900' => 'sbr', 'Sabra13G0039000' => 'sbr', 'SalBow2G0782' => 'sbo', 'SalBow2G1403' => 'sbo', 'SalBow4G0074' => 'sbo', 'SalBow4G2635' => 'sbo', 'SalBow5G3010' => 'sbo', 'Sc05g0000870' => 'sci', 'Sc05g0000890' => 'sci', 'Sc13g0005000' => 'sci', 'Sc13g0005030' => 'sci', 'Sc19g0003790' => 'sci', 'Sc19g0003800' => 'sci', 'Sed0003467' => 'sed', 'Sed0009355' => 'sed', 'Sed0009894' => 'sed', 'Sed0011972' => 'sed', 'Sed0021483' => 'sed', 'Sed0021750' => 'sed', 'Sed0026279' => 'sed', 'SEGI_05312' => 'sgi', 'SEGI_10112' => 'sgi', 'SEGI_15835' => 'sgi', 'SEGI_30386' => 'sgi', 'SEGI_34122' => 'sgi', 'SEGI_35063' => 'sgi', 'SGA_v2.0_scaffold101G29794' => 'sas', 'SGA_v2.0_scaffold1G00573' => 'sas', 'SGA_v2.0_scaffold79G25637' => 'sas', 'SGA_v2.0_scaffold88G27283' => 'sas', 'SGA_v2.0_scaffold88G27285' => 'sas', 'SGA_v2.0_scaffold88G27331' => 'sas', 'SHI09937' => 'shi', 'SMO119G0302' => 'smo', 'SMO137G0231' => 'smo', 'SMO367G1151' => 'smo', 'Solyc02g082000.3' => 'sly', 'Solyc06g031670.3' => 'sly', 'Solyc06g053810.3' => 'sly', 'Solyc07g025457.1' => 'sly', 'Solyc08g059740.1' => 'sly', 'Solyc08g059750.3' => 'sly', 'Solyc09g083370.3' => 'sly', 'Solyc12g038950.3' => 'sly', 'Sopen02g026630' => 'spe', 'Sopen06g018930' => 'spe', 'Sopen06g018940' => 'spe', 'Sopen08g009460' => 'spe', 'Sopen09g032290' => 'spe', 'Sp1g03080' => 'spa', 'Sp1g03090' => 'spa', 'Sp1g05480' => 'spa', 'Sp2g07860' => 'spa', 'Sp2g08430' => 'spa', 'Sp2g08440' => 'spa', 'Sp2g26200' => 'spa', 'Sp4g13170' => 'spa', 'Sp6g33840' => 'spa', 'SpUn1204_0010' => 'spa', 'TAR365G0908' => 'tar', 'TAR381G1270' => 'tar', 'TAR381G1651' => 'tar', 'TAR625G1131' => 'tar', 'TAR633G0962' => 'tar', 'TAR633G1729' => 'tar', 'TAR633G1864' => 'tar', 'TAR636G0221' => 'tar', 'TAR636G0314' => 'tar', 'TAR636G3202' => 'tar', 'THA.LOC104800805' => 'tha', 'THA.LOC104801096' => 'tha', 'THA.LOC104801555' => 'tha', 'THA.LOC104808491' => 'tha', 'THA.LOC104808595' => 'tha', 'THA.LOC104815985' => 'tha', 'THA.LOC104822250' => 'tha', 'THA.LOC104826071' => 'tha', 'Thecc.01G265200' => 'tca', 'Thecc.01G265300' => 'tca', 'Thecc.01G265700' => 'tca', 'Thecc.03G109100' => 'tca', 'Thecc.04G245900' => 'tca', 'Thecc.04G246000' => 'tca', 'Thhalv10003334m.g' => 'esa', 'Thhalv10005508m.g' => 'esa', 'Thhalv10005643m.g' => 'esa', 'Thhalv10007316m.g' => 'esa', 'Thhalv10009006m.g' => 'esa', 'Thhalv10009309m.g' => 'esa', 'Thhalv10014917m.g' => 'esa', 'Thhalv10014919m.g' => 'esa', 'Thhalv10015393m.g' => 'esa', 'Thhalv10016515m.g' => 'esa', 'Thhalv10029242m.g' => 'esa', 'TPR.G16654' => 'tpr', 'TPR.G20589' => 'tpr', 'TPR.G23029' => 'tpr', 'TPR.G27731' => 'tpr', 'TPR.G28889' => 'tpr', 'TPR.G28899' => 'tpr', 'TPR.G30846' => 'tpr', 'TPR.G5452' => 'tpr', 'TPR.G5713' => 'tpr', 'TPR.G9046' => 'tpr', 'TPR.G9061' => 'tpr', 'TWI09G1075' => 'twi', 'TWI12G0806' => 'twi', 'TWI18G0108' => 'twi', 'TWI53G1361' => 'twi', 'TWI73G0185' => 'twi', 'TWI73G0427' => 'twi', 'unitig_37.g12001' => 'ugi', 'unitig_747.g21660' => 'ugi', 'unitig_748.g7232' => 'ugi', 'unitig_748.g7315' => 'ugi', 'unitig_85.g27262' => 'ugi', 'unitig_92.g28220' => 'ugi', 'vmacro02632' => 'vma', 'vmacro08410' => 'vma', 'vmacro08411' => 'vma', 'vmacro15407' => 'vma', 'VMungo0251G3619' => 'vmu', 'VMungo0720G1204' => 'vmu', 'VMungo0720G1918' => 'vmu', 'VMungo0720G2387' => 'vmu', 'VMungo0720G2961' => 'vmu', 'VMungo1215G2154' => 'vmu', 'VMungo1383G2411' => 'vmu', 'Zm00001eb051130' => 'zma', 'Zm00001eb116830' => 'zma', 'Zm00001eb116850' => 'zma', 'Zm00001eb151740' => 'zma', 'Zm00001eb292360' => 'zma', 'Zm00001eb301640' => 'zma' ) $gf_id = 'HOM05D000856' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000856' ) $data_identifier = 'HOM05D000856' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 13, 'ath' => (int) 10, 'atr' => (int) 1, 'acertr' => (int) 8, 'cqu' => (int) 6, 'bca' => (int) 21, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 11, 'car' => (int) 9, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 8, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 5, 'fan' => (int) 16, 'fve' => (int) 6, 'gma' => (int) 11, 'ghi' => (int) 19, 'gra' => (int) 9, 'vvi' => (int) 7, 'han' => (int) 17, 'cav' => (int) 5, 'hma' => (int) 2, 'vpl' => (int) 2, 'sun' => (int) 7, 'lal' => (int) 9, 'lja' => (int) 5, 'lonja' => (int) 9, 'lsa' => (int) 5, 'mes' => (int) 8, 'mpo' => (int) 3, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 10, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 15, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 9, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 9, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 6, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 5, 'spa' => (int) 10, 'tar' => (int) 10, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 11, 'tpr' => (int) 11, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 4, 'vmu' => (int) 7, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb301640' $species_info = array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ) $local_species = 'pco' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000856', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p00010' => 'bna', 'A03p04160' => 'bna', 'A03p17160' => 'bna', 'A04p23370' => 'bna', 'A05p14860' => 'bna', 'A08p37020' => 'bna', 'A09p08050' => 'bna', 'A09p66800' => 'bna', 'A09p67940' => 'bna', 'A10p02680' => 'bna', 'A10p05320' => 'bna', 'Aa31LG1G20560' => 'aar', 'Aa31LG1G20610' => 'aar', 'Aa31LG1G7810' => 'aar', 'Aa31LG5G3590' => 'aar', 'Aa31LG5G6140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3819' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4683' => 'aag', 'Actinidia04480' => 'ach', 'Actinidia05466' => 'ach', 'Actinidia08445' => 'ach', 'Actinidia21170' => 'ach', 'Actinidia24812' => 'ach', 'Actinidia24951' => 'ach', 'Actinidia40088' => 'ach', 'Ah.02g111660' => 'amhyb', 'Ah.11g048900' => 'amhyb', 'Ah.11g049910' => 'amhyb', 'AL1G13870' => 'aly', 'AL1G13880' => 'aly', 'AL1G16760' => 'aly', 'AL390U10020' => 'aly', 'AL4G25520' => 'aly', 'AL6G19890' => 'aly', 'AL6G19900' => 'aly', 'AL6G19910' => 'aly', 'AL8G40100' => 'aly', 'Aqoxy2G03562' => 'aox', 'Aqoxy5G00316' => 'aox', 'Aqoxy5G00926' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1628KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1H403S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2FU6SJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.882I6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8YRY2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YN1SN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AF70II' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZA8L1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F916KL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHRD8H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KTZ8QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S22EMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8M29T' => 'arhy', 'AT1G04270' => 'ath', 'AT1G04280' => 'ath', 'AT1G06750' => 'ath', 'AT1G33850' => 'ath', 'AT2G30630' => 'ath', 'AT5G09490' => 'ath', 'AT5G09500' => 'ath', 'AT5G09510' => 'ath', 'AT5G43640' => 'ath', 'AT5G63070' => 'ath', 'ATR0605G315' => 'atr', 'Atru.chr11.175' => 'acertr', 'Atru.chr11.653' => 'acertr', 'Atru.chr3.1616' => 'acertr', 'Atru.chr4.2230' => 'acertr', 'Atru.chr4.2232' => 'acertr', 'Atru.chr5.1598' => 'acertr', 'Atru.chr5.1600' => 'acertr', 'Atru.chr5.2188' => 'acertr', 'AUR62008326' => 'cqu', 'AUR62011922' => 'cqu', 'AUR62011924' => 'cqu', 'AUR62021771' => 'cqu', 'AUR62032237' => 'cqu', 'AUR62032240' => 'cqu', 'BcaB01g05572' => 'bca', 'BcaB02g10337' => 'bca', 'BcaB04g19944' => 'bca', 'BcaB05g21548' => 'bca', 'BcaB05g21549' => 'bca', 'BcaB05g23227' => 'bca', 'BcaB06g26256' => 'bca', 'BcaB06g26257' => 'bca', 'BcaB06g28379' => 'bca', 'BcaC02g11159' => 'bca', 'BcaC03g13258' => 'bca', 'BcaC03g13259' => 'bca', 'BcaC05g24456' => 'bca', 'BcaC05g24457' => 'bca', 'BcaC07g36922' => 'bca', 'BcaC07g36923' => 'bca', 'BcaC07g42050' => 'bca', 'BcaC07g42176' => 'bca', 'BcaC07g42195' => 'bca', 'BcaC07g42196' => 'bca', 'BcaNung06674' => 'bca', 'BolC2t06351H' => 'bol', 'BolC2t06352H' => 'bol', 'BolC3t12993H' => 'bol', 'BolC4t23525H' => 'bol', 'BolC4t27475H' => 'bol', 'BolC5t29025H' => 'bol', 'BolC5t29026H' => 'bol', 'BolC8t46898H' => 'bol', 'BolC8t46899H' => 'bol', 'BolC8t52630H' => 'bol', 'BolC8t52765H' => 'bol', 'BolC9t53824H' => 'bol', 'BraA03t09760Z' => 'bra', 'BraA03t10990Z' => 'bra', 'BraA05t20413Z' => 'bra', 'BraA08t35602Z' => 'bra', 'BraA09t36458Z' => 'bra', 'BraA09t42018Z' => 'bra', 'BraA09t42129Z' => 'bra', 'BraA10t42536Z' => 'bra', 'BraA10t42537Z' => 'bra', 'C01p10690' => 'bna', 'C02p03890' => 'bna', 'C02p03900' => 'bna', 'C03p04620' => 'bna', 'C04p19870' => 'bna', 'C04p59670' => 'bna', 'C05p02460' => 'bna', 'C05p02470' => 'bna', 'C08p00980' => 'bna', 'C08p00990' => 'bna', 'C08p51030' => 'bna', 'C08p52360' => 'bna', 'C09p09120' => 'bna', 'CAN.G19.15' => 'can', 'CAN.G251.10' => 'can', 'CAN.G251.9' => 'can', 'CAN.G398.24' => 'can', 'CAN.G410.32' => 'can', 'CAN.G881.2' => 'can', 'CANSAT01G3025' => 'cansat', 'CANSAT78G1211' => 'cansat', 'CANSAT78G1218' => 'cansat', 'CANSAT78G1521' => 'cansat', 'CANSAT78G1670' => 'cansat', 'CARHR003600' => 'chi', 'CARHR003610' => 'chi', 'CARHR006290' => 'chi', 'CARHR006430' => 'chi', 'CARHR124110' => 'chi', 'CARHR203870' => 'chi', 'CARHR203880' => 'chi', 'CARHR203890' => 'chi', 'CARHR276880' => 'chi', 'Carub.0001s0346' => 'cru', 'Carub.0001s0347' => 'cru', 'Carub.0001s0607' => 'cru', 'Carub.0003s2768' => 'cru', 'Carub.0003s2769' => 'cru', 'Carub.0004s1178' => 'cru', 'Carub.0006s0806' => 'cru', 'Carub.0006s0807' => 'cru', 'Carub.0006s0808' => 'cru', 'Carub.0008s0501' => 'cru', 'Carub.0008s2379' => 'cru', 'Ca_08655_v3' => 'car', 'Ca_08922_v3' => 'car', 'Ca_08923_v3' => 'car', 'Ca_09119_v3' => 'car', 'Ca_09703_v3' => 'car', 'Ca_09705_v3' => 'car', 'Ca_09835_v3' => 'car', 'Ca_26403_v3' => 'car', 'Ca_30719_v3' => 'car', 'CBR_g17958' => 'cbr', 'CBR_g40516' => 'cbr', 'Cc00_g05350' => 'ccan', 'Cc01_g18690' => 'ccan', 'Cc03_g04830' => 'ccan', 'Cc03_g04850' => 'ccan', 'CDE02G4469' => 'cde', 'CDE06G0883' => 'cde', 'CDE06G1295' => 'cde', 'CDE06G1390' => 'cde', 'CDE07G0584' => 'cde', 'CDE07G1084' => 'cde', 'CDE08G1259' => 'cde', 'Cfa002341' => 'cfa', 'Cfa024337' => 'cfa', 'Ciclev10004749m.g' => 'ccl', 'Ciclev10006127m.g' => 'ccl', 'Ciclev10019720m.g' => 'ccl', 'Ciclev10022652m.g' => 'ccl', 'CiPaw.01G190400' => 'cil', 'CiPaw.01G190500' => 'cil', 'CiPaw.02G116400' => 'cil', 'CiPaw.02G116500' => 'cil', 'CiPaw.04G183000' => 'cil', 'CiPaw.04G183300' => 'cil', 'ClCG05G004610' => 'cla', 'ClCG05G004620' => 'cla', 'ClCG06G006730' => 'cla', 'ClCG06G006740' => 'cla', 'ClCG11G003690' => 'cla', 'COL.COLO4_08276' => 'col', 'COL.COLO4_08277' => 'col', 'COL.COLO4_15787' => 'col', 'COL.COLO4_15789' => 'col', 'Cpa.g.c44815' => 'cpa', 'Cpa.g.sc52.144' => 'cpa', 'Cpa.g.sc58.46' => 'cpa', 'Cpa.g.sc58.47' => 'cpa', 'Cre08.g360900' => 'cre', 'CsaV3_2G013030' => 'csa', 'CsaV3_2G013050' => 'csa', 'CsaV3_2G015620' => 'csa', 'CsaV3_3G012590' => 'csa', 'CsaV3_3G012600' => 'csa', 'CSS0001641' => 'camsi', 'CSS0008310' => 'camsi', 'CSS0013011' => 'camsi', 'CSS0017147' => 'camsi', 'CSS0022970' => 'camsi', 'CSS0025655' => 'camsi', 'CSS0028665' => 'camsi', 'CSS0029117' => 'camsi', 'CSS0032024' => 'camsi', 'CSS0039681' => 'camsi', 'CSS0046516' => 'camsi', 'CSS0050307' => 'camsi', 'DCAR_005871' => 'dca', 'DCAR_007342' => 'dca', 'DCAR_024228' => 'dca', 'DCAR_027277' => 'dca', 'DCAR_030718' => 'dca', 'Dinv20287' => 'din', 'Dinv22461' => 'din', 'Dinv22464' => 'din', 'Dinv29912' => 'din', 'Dinv29913' => 'din', 'Dinv34580' => 'din', 'Dinv34582' => 'din', 'Dinv44632' => 'din', 'Duzib052G0266' => 'dzi', 'Duzib133G0907' => 'dzi', 'Duzib133G1034' => 'dzi', 'Duzib138G0207' => 'dzi', 'Duzib138G0491' => 'dzi', 'Duzib151G0812' => 'dzi', 'Duzib151G1166' => 'dzi', 'Duzib168G0192' => 'dzi', 'Duzib211G0077' => 'dzi', 'Duzib212G0429' => 'dzi', 'Duzib212G0472' => 'dzi', 'ECA233G2617' => 'eca', 'ECA236G4188' => 'eca', 'ECA240G0936' => 'eca', 'ECA240G1129' => 'eca', 'ECA247G0623' => 'eca', 'EL10Ac5g10451' => 'bvu', 'EL10Ac5g10453' => 'bvu', 'EL10Ac5g10894' => 'bvu', 'Eucgr.H00192' => 'egr', 'Eucgr.H00193' => 'egr', 'Eucgr.H00194' => 'egr', 'Eucgr.J01562' => 'egr', 'Eucgr.K03301' => 'egr', 'FAN02G0632' => 'fan', 'FAN05G5378' => 'fan', 'FAN09G3247' => 'fan', 'FAN12G0435' => 'fan', 'FAN12G2426' => 'fan', 'FAN14G1707' => 'fan', 'FAN14G4725' => 'fan', 'FAN15G2071' => 'fan', 'FAN17G3065' => 'fan', 'FAN19G1376' => 'fan', 'FAN20G0354' => 'fan', 'FAN20G2429' => 'fan', 'FAN20G2658' => 'fan', 'FAN24G2343' => 'fan', 'FAN27G2362' => 'fan', 'FAN28G1765' => 'fan', 'FvH4_1g16020' => 'fve', 'FvH4_2g04890' => 'fve', 'FvH4_2g22270' => 'fve', 'FvH4_4g02630' => 'fve', 'FvH4_4g02640' => 'fve', 'FvH4_6g02650' => 'fve', 'Glyma.02G140600' => 'gma', 'Glyma.03G159900' => 'gma', 'Glyma.05G234800' => 'gma', 'Glyma.07G269600' => 'gma', 'Glyma.08G042300' => 'gma', 'Glyma.10G033500' => 'gma', 'Glyma.10G185200' => 'gma', 'Glyma.17G004300' => 'gma', 'Glyma.19G161900' => 'gma', 'Glyma.20G205100' => 'gma', 'Glyma.20G205200' => 'gma', 'Gohir.A01G139101' => 'ghi', 'Gohir.A02G035600' => 'ghi', 'Gohir.A02G117901' => 'ghi', 'Gohir.A07G210100' => 'ghi', 'Gohir.A07G210200' => 'ghi', 'Gohir.A08G061100' => 'ghi', 'Gohir.A09G223000' => 'ghi', 'Gohir.A09G223100' => 'ghi', 'Gohir.A10G113900' => 'ghi', 'Gohir.A10G114000' => 'ghi', 'Gohir.D02G042300' => 'ghi', 'Gohir.D07G216100' => 'ghi', 'Gohir.D07G216200' => 'ghi', 'Gohir.D08G070400' => 'ghi', 'Gohir.D09G225000' => 'ghi', 'Gohir.D09G225100' => 'ghi', 'Gohir.D10G152300' => 'ghi', 'Gohir.D10G153200' => 'ghi', 'Gohir.D11G133701' => 'ghi', 'Gorai.004G074100' => 'gra', 'Gorai.005G046800' => 'gra', 'Gorai.006G246500' => 'gra', 'Gorai.006G246600' => 'gra', 'Gorai.007G142900' => 'gra', 'Gorai.011G171000' => 'gra', 'Gorai.011G171100' => 'gra', 'Gorai.013G104300' => 'gra', 'Gorai.013G104400' => 'gra', 'GSVIVG01000754001' => 'vvi', 'GSVIVG01000756001' => 'vvi', 'GSVIVG01010903001' => 'vvi', 'GSVIVG01017623001' => 'vvi', 'GSVIVG01018113001' => 'vvi', 'GSVIVG01018116001' => 'vvi', 'GSVIVG01018118001' => 'vvi', 'HanXRQChr03g0076211' => 'han', 'HanXRQChr03g0092431' => 'han', 'HanXRQChr03g0092441' => 'han', 'HanXRQChr03g0092591' => 'han', 'HanXRQChr03g0092671' => 'han', 'HanXRQChr03g0092681' => 'han', 'HanXRQChr03g0092691' => 'han', 'HanXRQChr03g0092701' => 'han', 'HanXRQChr03g0092721' => 'han', 'HanXRQChr03g0092731' => 'han', 'HanXRQChr04g0113681' => 'han', 'HanXRQChr10g0281371' => 'han', 'HanXRQChr11g0337141' => 'han', 'HanXRQChr13g0424521' => 'han', 'HanXRQChr13g0424531' => 'han', 'HanXRQChr13g0424541' => 'han', 'HanXRQChr16g0498221' => 'han', 'Haze_04377' => 'cav', 'Haze_11298' => 'cav', 'Haze_24547' => 'cav', 'Haze_24550' => 'cav', 'Haze_26587' => 'cav', 'Hma1.2p1_0650F.1_g195410' => 'hma', 'Hma1.2p1_0893F.1_g233470' => 'hma', 'HPP92_006508' => 'vpl', 'HPP92_024780' => 'vpl', 'Hund02688' => 'sun', 'Hund09380' => 'sun', 'Hund09381' => 'sun', 'Hund09832' => 'sun', 'Hund09833' => 'sun', 'Hund11351' => 'sun', 'Hund11513' => 'sun', 'Lalb_Chr06g0162591' => 'lal', 'Lalb_Chr06g0162601' => 'lal', 'Lalb_Chr06g0169321' => 'lal', 'Lalb_Chr09g0330951' => 'lal', 'Lalb_Chr16g0387631' => 'lal', 'Lalb_Chr21g0306241' => 'lal', 'Lalb_Chr25g0290051' => 'lal', 'Lalb_Chr25g0290061' => 'lal', 'Lalb_Chr25g0290071' => 'lal', 'Lj1g0003876' => 'lja', 'Lj1P1207T36' => 'lonja', 'Lj2C1156G12' => 'lonja', 'Lj3A793G39' => 'lonja', 'Lj3C580G2' => 'lonja', 'Lj3C780G2' => 'lonja', 'Lj3C780T4' => 'lonja', 'Lj3C793G9' => 'lonja', 'Lj4g0012960' => 'lja', 'Lj5g0021252' => 'lja', 'Lj5g0021484' => 'lja', 'Lj5g0024528' => 'lja', 'Lj6A399T12' => 'lonja', 'Lj6A656G65' => 'lonja', 'Lsat_1_v5_gn_3_125500' => 'lsa', 'Lsat_1_v5_gn_3_125540' => 'lsa', 'Lsat_1_v5_gn_5_72701' => 'lsa', 'Lsat_1_v5_gn_8_91560' => 'lsa', 'Lsat_1_v5_gn_9_9640' => 'lsa', 'Manes.01G200600' => 'mes', 'Manes.01G200700' => 'mes', 'Manes.03G168900' => 'mes', 'Manes.03G169000' => 'mes', 'Manes.05G085801' => 'mes', 'Manes.05G086200' => 'mes', 'Manes.15G036700' => 'mes', 'Manes.15G036900' => 'mes', 'Mapoly0004s0172' => 'mpo', 'Mapoly0023s0001' => 'mpo', 'Mapoly0142s0012' => 'mpo', 'MBI01_g32854_MAGBIO' => 'mbi', 'MBI11_g24427_MAGBIO' => 'mbi', 'MBI11_g47319_MAGBIO' => 'mbi', 'MCO01G433' => 'mco', 'MD00G1187800' => 'mdo', 'MD04G1226500' => 'mdo', 'MD05G1203900' => 'mdo', 'MD10G1191100' => 'mdo', 'MD12G1243500' => 'mdo', 'MD13G1207000' => 'mdo', 'MD13G1207100' => 'mdo', 'MD16G1208600' => 'mdo', 'Medtr1g050352' => 'mtr', 'Medtr1g070385' => 'mtr', 'Medtr1g070450' => 'mtr', 'Medtr1g075200' => 'mtr', 'Medtr1g075250' => 'mtr', 'Medtr1g075260' => 'mtr', 'Medtr1g475250' => 'mtr', 'Medtr4g075450' => 'mtr', 'Medtr7g096300' => 'mtr', 'Medtr8g105110' => 'mtr', 'MELO3C006470.2' => 'cme', 'MELO3C006471.2' => 'cme', 'MELO3C020772.2' => 'cme', 'MELO3C026780.2' => 'cme', 'MELO3C026781.2' => 'cme', 'Migut.D00390' => 'egut', 'Migut.G00435' => 'egut', 'Migut.G00436' => 'egut', 'Migut.G00718' => 'egut', 'MSTRG.21891' => 'ama', 'MSTRG.26910' => 'ama', 'MSTRG.4099' => 'ama', 'MSTRG.9925' => 'ama', 'Nitab4.5_0000165g0010' => 'nta', 'Nitab4.5_0000209g0180' => 'nta', 'Nitab4.5_0000244g0440' => 'nta', 'Nitab4.5_0000525g0220' => 'nta', 'Nitab4.5_0001597g0020' => 'nta', 'Nitab4.5_0001878g0040' => 'nta', 'Nitab4.5_0001878g0060' => 'nta', 'Nitab4.5_0002838g0100' => 'nta', 'Nitab4.5_0002838g0120' => 'nta', 'Nitab4.5_0004798g0030' => 'nta', 'Nitab4.5_0005420g0010' => 'nta', 'Nitab4.5_0005507g0010' => 'nta', 'Nitab4.5_0005574g0020' => 'nta', 'Nitab4.5_0005838g0010' => 'nta', 'Nitab4.5_0010580g0020' => 'nta', 'Nn1g02599' => 'nnu', 'Nn1g02608' => 'nnu', 'Nn3g17742' => 'nnu', 'Nn3g19534' => 'nnu', 'Nn3g19535' => 'nnu', 'Oeu008790.1' => 'oeu', 'Oeu008792.1' => 'oeu', 'Oeu032590.1' => 'oeu', 'Oeu035349.1' => 'oeu', 'Oeu049791.1' => 'oeu', 'Os01g0774500' => 'osa', 'Os03g0628800' => 'osa', 'Os03g0798600' => 'osa', 'Os05g0508800' => 'osa', 'Peaxi162Scf00036g02018' => 'pax', 'Peaxi162Scf00578g00032' => 'pax', 'Peaxi162Scf00578g00317' => 'pax', 'Peaxi162Scf00785g00114' => 'pax', 'Peaxi162Scf00813g00119' => 'pax', 'Peaxi162Scf00906g00227' => 'pax', 'PGR004G0875' => 'pgr', 'PGR004G2424' => 'pgr', 'PGR031G1239' => 'pgr', 'PGR031G2474' => 'pgr', 'PGR044G0423' => 'pgr', 'PGSC0003DMG400001128' => 'stu', 'PGSC0003DMG400007336' => 'stu', 'PGSC0003DMG400016318' => 'stu', 'PGSC0003DMG400016319' => 'stu', 'PGSC0003DMG400018074' => 'stu', 'Phvul.001G157700' => 'pvu', 'Phvul.002G148550' => 'pvu', 'Phvul.002G320200' => 'pvu', 'Phvul.003G089200' => 'pvu', 'Phvul.007G126000' => 'pvu', 'Phvul.007G126100' => 'pvu', 'Phvul.007G178000' => 'pvu', 'Phvul.007G178200' => 'pvu', 'Potri.002G043000' => 'ptr', 'Potri.002G043200' => 'ptr', 'Potri.003G123750' => 'ptr', 'Potri.005G055401' => 'ptr', 'Potri.005G219700' => 'ptr', 'Potri.005G220000' => 'ptr', 'Potri.008G161901' => 'ptr', 'Potri.008G162000' => 'ptr', 'Potri.008G162400' => 'ptr', 'Potri.010G076900' => 'ptr', 'Pp3c12_9180' => 'ppa', 'Pp3c13_19770' => 'ppa', 'Pp3c14_22950' => 'ppa', 'Pp3c16_12160' => 'ppa', 'Pp3c27_7820' => 'ppa', 'Pp3c2_3490' => 'ppa', 'Pp3c3_23700' => 'ppa', 'Pp3c3_36520' => 'ppa', 'Pp3c4_15250' => 'ppa', 'PRCOL_00007002' => 'pco', 'Prupe.1G030600' => 'ppe', 'Prupe.1G030700' => 'ppe', 'Prupe.6G345200' => 'ppe', 'Prupe.8G230300' => 'ppe', 'Prupe.8G230500' => 'ppe', 'Psat3g059600' => 'psa', 'Psat5g200920' => 'psa', 'Psat6g056440' => 'psa', 'Psat6g057360' => 'psa', 'Psat6g134120' => 'psa', 'Psat6g134160' => 'psa', 'Psat7g008640' => 'psa', 'Psat7g185240' => 'psa', 'PSO017G1330' => 'pso', 'PSO063G6097' => 'pso', 'PSO170G0835' => 'pso', 'PSO170G2499' => 'pso', 'PSO210G5058' => 'pso', 'PSO210G6154' => 'pso', 'PSO585G0031' => 'pso', 'PSO832G0264' => 'pso', 'PSO832G4288' => 'pso', 'QL03p027355' => 'qlo', 'QL03p027430' => 'qlo', 'QL04p081380' => 'qlo', 'QL06p015642' => 'qlo', 'QL06p015650' => 'qlo', 'QL06p015686' => 'qlo', 'QL12p042927' => 'qlo', 'QL93p1863_0035' => 'qlo', 'RcHm_v2.0_Chr3g0450581' => 'rch', 'RcHm_v2.0_Chr4g0390371' => 'rch', 'RcHm_v2.0_Chr4g0390381' => 'rch', 'RcHm_v2.0_Chr4g0390491' => 'rch', 'RcHm_v2.0_Chr4g0390501' => 'rch', 'RcHm_v2.0_Chr6g0289231' => 'rch', 'Rhsim04G0190400' => 'rsi', 'Rhsim04G0190500' => 'rsi', 'Rhsim04G0190600' => 'rsi', 'Rhsim13G0031400' => 'rsi', 'Rhsim13G0165600' => 'rsi', 'RhsimUnG0114600' => 'rsi', 'RhsimUnG0114700' => 'rsi', 'Sabra02G0034800' => 'sbr', 'Sabra02G0035100' => 'sbr', 'Sabra05G0168600' => 'sbr', 'Sabra05G0168800' => 'sbr', 'Sabra08G0123700' => 'sbr', 'Sabra10G0031900' => 'sbr', 'Sabra13G0039000' => 'sbr', 'SalBow2G0782' => 'sbo', 'SalBow2G1403' => 'sbo', 'SalBow4G0074' => 'sbo', 'SalBow4G2635' => 'sbo', 'SalBow5G3010' => 'sbo', 'Sc05g0000870' => 'sci', 'Sc05g0000890' => 'sci', 'Sc13g0005000' => 'sci', 'Sc13g0005030' => 'sci', 'Sc19g0003790' => 'sci', 'Sc19g0003800' => 'sci', 'Sed0003467' => 'sed', 'Sed0009355' => 'sed', 'Sed0009894' => 'sed', 'Sed0011972' => 'sed', 'Sed0021483' => 'sed', 'Sed0021750' => 'sed', 'Sed0026279' => 'sed', 'SEGI_05312' => 'sgi', 'SEGI_10112' => 'sgi', 'SEGI_15835' => 'sgi', 'SEGI_30386' => 'sgi', 'SEGI_34122' => 'sgi', 'SEGI_35063' => 'sgi', 'SGA_v2.0_scaffold101G29794' => 'sas', 'SGA_v2.0_scaffold1G00573' => 'sas', 'SGA_v2.0_scaffold79G25637' => 'sas', 'SGA_v2.0_scaffold88G27283' => 'sas', 'SGA_v2.0_scaffold88G27285' => 'sas', 'SGA_v2.0_scaffold88G27331' => 'sas', 'SHI09937' => 'shi', 'SMO119G0302' => 'smo', 'SMO137G0231' => 'smo', 'SMO367G1151' => 'smo', 'Solyc02g082000.3' => 'sly', 'Solyc06g031670.3' => 'sly', 'Solyc06g053810.3' => 'sly', 'Solyc07g025457.1' => 'sly', 'Solyc08g059740.1' => 'sly', 'Solyc08g059750.3' => 'sly', 'Solyc09g083370.3' => 'sly', 'Solyc12g038950.3' => 'sly', 'Sopen02g026630' => 'spe', 'Sopen06g018930' => 'spe', 'Sopen06g018940' => 'spe', 'Sopen08g009460' => 'spe', 'Sopen09g032290' => 'spe', 'Sp1g03080' => 'spa', 'Sp1g03090' => 'spa', 'Sp1g05480' => 'spa', 'Sp2g07860' => 'spa', 'Sp2g08430' => 'spa', 'Sp2g08440' => 'spa', 'Sp2g26200' => 'spa', 'Sp4g13170' => 'spa', 'Sp6g33840' => 'spa', 'SpUn1204_0010' => 'spa', 'TAR365G0908' => 'tar', 'TAR381G1270' => 'tar', 'TAR381G1651' => 'tar', 'TAR625G1131' => 'tar', 'TAR633G0962' => 'tar', 'TAR633G1729' => 'tar', 'TAR633G1864' => 'tar', 'TAR636G0221' => 'tar', 'TAR636G0314' => 'tar', 'TAR636G3202' => 'tar', 'THA.LOC104800805' => 'tha', 'THA.LOC104801096' => 'tha', 'THA.LOC104801555' => 'tha', 'THA.LOC104808491' => 'tha', 'THA.LOC104808595' => 'tha', 'THA.LOC104815985' => 'tha', 'THA.LOC104822250' => 'tha', 'THA.LOC104826071' => 'tha', 'Thecc.01G265200' => 'tca', 'Thecc.01G265300' => 'tca', 'Thecc.01G265700' => 'tca', 'Thecc.03G109100' => 'tca', 'Thecc.04G245900' => 'tca', 'Thecc.04G246000' => 'tca', 'Thhalv10003334m.g' => 'esa', 'Thhalv10005508m.g' => 'esa', 'Thhalv10005643m.g' => 'esa', 'Thhalv10007316m.g' => 'esa', 'Thhalv10009006m.g' => 'esa', 'Thhalv10009309m.g' => 'esa', 'Thhalv10014917m.g' => 'esa', 'Thhalv10014919m.g' => 'esa', 'Thhalv10015393m.g' => 'esa', 'Thhalv10016515m.g' => 'esa', 'Thhalv10029242m.g' => 'esa', 'TPR.G16654' => 'tpr', 'TPR.G20589' => 'tpr', 'TPR.G23029' => 'tpr', 'TPR.G27731' => 'tpr', 'TPR.G28889' => 'tpr', 'TPR.G28899' => 'tpr', 'TPR.G30846' => 'tpr', 'TPR.G5452' => 'tpr', 'TPR.G5713' => 'tpr', 'TPR.G9046' => 'tpr', 'TPR.G9061' => 'tpr', 'TWI09G1075' => 'twi', 'TWI12G0806' => 'twi', 'TWI18G0108' => 'twi', 'TWI53G1361' => 'twi', 'TWI73G0185' => 'twi', 'TWI73G0427' => 'twi', 'unitig_37.g12001' => 'ugi', 'unitig_747.g21660' => 'ugi', 'unitig_748.g7232' => 'ugi', 'unitig_748.g7315' => 'ugi', 'unitig_85.g27262' => 'ugi', 'unitig_92.g28220' => 'ugi', 'vmacro02632' => 'vma', 'vmacro08410' => 'vma', 'vmacro08411' => 'vma', 'vmacro15407' => 'vma', 'VMungo0251G3619' => 'vmu', 'VMungo0720G1204' => 'vmu', 'VMungo0720G1918' => 'vmu', 'VMungo0720G2387' => 'vmu', 'VMungo0720G2961' => 'vmu', 'VMungo1215G2154' => 'vmu', 'VMungo1383G2411' => 'vmu', 'Zm00001eb051130' => 'zma', 'Zm00001eb116830' => 'zma', 'Zm00001eb116850' => 'zma', 'Zm00001eb151740' => 'zma', 'Zm00001eb292360' => 'zma', 'Zm00001eb301640' => 'zma' ), 'gf_id' => 'HOM05D000856', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000856' ), 'data_identifier' => 'HOM05D000856', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000856', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p00010' => 'bna', 'A03p04160' => 'bna', 'A03p17160' => 'bna', 'A04p23370' => 'bna', 'A05p14860' => 'bna', 'A08p37020' => 'bna', 'A09p08050' => 'bna', 'A09p66800' => 'bna', 'A09p67940' => 'bna', 'A10p02680' => 'bna', 'A10p05320' => 'bna', 'Aa31LG1G20560' => 'aar', 'Aa31LG1G20610' => 'aar', 'Aa31LG1G7810' => 'aar', 'Aa31LG5G3590' => 'aar', 'Aa31LG5G6140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3819' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4683' => 'aag', 'Actinidia04480' => 'ach', 'Actinidia05466' => 'ach', 'Actinidia08445' => 'ach', 'Actinidia21170' => 'ach', 'Actinidia24812' => 'ach', 'Actinidia24951' => 'ach', 'Actinidia40088' => 'ach', 'Ah.02g111660' => 'amhyb', 'Ah.11g048900' => 'amhyb', 'Ah.11g049910' => 'amhyb', 'AL1G13870' => 'aly', 'AL1G13880' => 'aly', 'AL1G16760' => 'aly', 'AL390U10020' => 'aly', 'AL4G25520' => 'aly', 'AL6G19890' => 'aly', 'AL6G19900' => 'aly', 'AL6G19910' => 'aly', 'AL8G40100' => 'aly', 'Aqoxy2G03562' => 'aox', 'Aqoxy5G00316' => 'aox', 'Aqoxy5G00926' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1628KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1H403S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2FU6SJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.882I6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8YRY2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YN1SN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AF70II' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZA8L1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F916KL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHRD8H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KTZ8QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S22EMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8M29T' => 'arhy', 'AT1G04270' => 'ath', 'AT1G04280' => 'ath', 'AT1G06750' => 'ath', 'AT1G33850' => 'ath', 'AT2G30630' => 'ath', 'AT5G09490' => 'ath', 'AT5G09500' => 'ath', 'AT5G09510' => 'ath', 'AT5G43640' => 'ath', 'AT5G63070' => 'ath', 'ATR0605G315' => 'atr', 'Atru.chr11.175' => 'acertr', 'Atru.chr11.653' => 'acertr', 'Atru.chr3.1616' => 'acertr', 'Atru.chr4.2230' => 'acertr', 'Atru.chr4.2232' => 'acertr', 'Atru.chr5.1598' => 'acertr', 'Atru.chr5.1600' => 'acertr', 'Atru.chr5.2188' => 'acertr', 'AUR62008326' => 'cqu', 'AUR62011922' => 'cqu', 'AUR62011924' => 'cqu', 'AUR62021771' => 'cqu', 'AUR62032237' => 'cqu', 'AUR62032240' => 'cqu', 'BcaB01g05572' => 'bca', 'BcaB02g10337' => 'bca', 'BcaB04g19944' => 'bca', 'BcaB05g21548' => 'bca', 'BcaB05g21549' => 'bca', 'BcaB05g23227' => 'bca', 'BcaB06g26256' => 'bca', 'BcaB06g26257' => 'bca', 'BcaB06g28379' => 'bca', 'BcaC02g11159' => 'bca', 'BcaC03g13258' => 'bca', 'BcaC03g13259' => 'bca', 'BcaC05g24456' => 'bca', 'BcaC05g24457' => 'bca', 'BcaC07g36922' => 'bca', 'BcaC07g36923' => 'bca', 'BcaC07g42050' => 'bca', 'BcaC07g42176' => 'bca', 'BcaC07g42195' => 'bca', 'BcaC07g42196' => 'bca', 'BcaNung06674' => 'bca', 'BolC2t06351H' => 'bol', 'BolC2t06352H' => 'bol', 'BolC3t12993H' => 'bol', 'BolC4t23525H' => 'bol', 'BolC4t27475H' => 'bol', 'BolC5t29025H' => 'bol', 'BolC5t29026H' => 'bol', 'BolC8t46898H' => 'bol', 'BolC8t46899H' => 'bol', 'BolC8t52630H' => 'bol', 'BolC8t52765H' => 'bol', 'BolC9t53824H' => 'bol', 'BraA03t09760Z' => 'bra', 'BraA03t10990Z' => 'bra', 'BraA05t20413Z' => 'bra', 'BraA08t35602Z' => 'bra', 'BraA09t36458Z' => 'bra', 'BraA09t42018Z' => 'bra', 'BraA09t42129Z' => 'bra', 'BraA10t42536Z' => 'bra', 'BraA10t42537Z' => 'bra', 'C01p10690' => 'bna', 'C02p03890' => 'bna', 'C02p03900' => 'bna', 'C03p04620' => 'bna', 'C04p19870' => 'bna', 'C04p59670' => 'bna', 'C05p02460' => 'bna', 'C05p02470' => 'bna', 'C08p00980' => 'bna', 'C08p00990' => 'bna', 'C08p51030' => 'bna', 'C08p52360' => 'bna', 'C09p09120' => 'bna', 'CAN.G19.15' => 'can', 'CAN.G251.10' => 'can', 'CAN.G251.9' => 'can', 'CAN.G398.24' => 'can', 'CAN.G410.32' => 'can', 'CAN.G881.2' => 'can', 'CANSAT01G3025' => 'cansat', 'CANSAT78G1211' => 'cansat', 'CANSAT78G1218' => 'cansat', 'CANSAT78G1521' => 'cansat', 'CANSAT78G1670' => 'cansat', 'CARHR003600' => 'chi', 'CARHR003610' => 'chi', 'CARHR006290' => 'chi', 'CARHR006430' => 'chi', 'CARHR124110' => 'chi', 'CARHR203870' => 'chi', 'CARHR203880' => 'chi', 'CARHR203890' => 'chi', 'CARHR276880' => 'chi', 'Carub.0001s0346' => 'cru', 'Carub.0001s0347' => 'cru', 'Carub.0001s0607' => 'cru', 'Carub.0003s2768' => 'cru', 'Carub.0003s2769' => 'cru', 'Carub.0004s1178' => 'cru', 'Carub.0006s0806' => 'cru', 'Carub.0006s0807' => 'cru', 'Carub.0006s0808' => 'cru', 'Carub.0008s0501' => 'cru', 'Carub.0008s2379' => 'cru', 'Ca_08655_v3' => 'car', 'Ca_08922_v3' => 'car', 'Ca_08923_v3' => 'car', 'Ca_09119_v3' => 'car', 'Ca_09703_v3' => 'car', 'Ca_09705_v3' => 'car', 'Ca_09835_v3' => 'car', 'Ca_26403_v3' => 'car', 'Ca_30719_v3' => 'car', 'CBR_g17958' => 'cbr', 'CBR_g40516' => 'cbr', 'Cc00_g05350' => 'ccan', 'Cc01_g18690' => 'ccan', 'Cc03_g04830' => 'ccan', 'Cc03_g04850' => 'ccan', 'CDE02G4469' => 'cde', 'CDE06G0883' => 'cde', 'CDE06G1295' => 'cde', 'CDE06G1390' => 'cde', 'CDE07G0584' => 'cde', 'CDE07G1084' => 'cde', 'CDE08G1259' => 'cde', 'Cfa002341' => 'cfa', 'Cfa024337' => 'cfa', 'Ciclev10004749m.g' => 'ccl', 'Ciclev10006127m.g' => 'ccl', 'Ciclev10019720m.g' => 'ccl', 'Ciclev10022652m.g' => 'ccl', 'CiPaw.01G190400' => 'cil', 'CiPaw.01G190500' => 'cil', 'CiPaw.02G116400' => 'cil', 'CiPaw.02G116500' => 'cil', 'CiPaw.04G183000' => 'cil', 'CiPaw.04G183300' => 'cil', 'ClCG05G004610' => 'cla', 'ClCG05G004620' => 'cla', 'ClCG06G006730' => 'cla', 'ClCG06G006740' => 'cla', 'ClCG11G003690' => 'cla', 'COL.COLO4_08276' => 'col', 'COL.COLO4_08277' => 'col', 'COL.COLO4_15787' => 'col', 'COL.COLO4_15789' => 'col', 'Cpa.g.c44815' => 'cpa', 'Cpa.g.sc52.144' => 'cpa', 'Cpa.g.sc58.46' => 'cpa', 'Cpa.g.sc58.47' => 'cpa', 'Cre08.g360900' => 'cre', 'CsaV3_2G013030' => 'csa', 'CsaV3_2G013050' => 'csa', 'CsaV3_2G015620' => 'csa', 'CsaV3_3G012590' => 'csa', 'CsaV3_3G012600' => 'csa', 'CSS0001641' => 'camsi', 'CSS0008310' => 'camsi', 'CSS0013011' => 'camsi', 'CSS0017147' => 'camsi', 'CSS0022970' => 'camsi', 'CSS0025655' => 'camsi', 'CSS0028665' => 'camsi', 'CSS0029117' => 'camsi', 'CSS0032024' => 'camsi', 'CSS0039681' => 'camsi', 'CSS0046516' => 'camsi', 'CSS0050307' => 'camsi', 'DCAR_005871' => 'dca', 'DCAR_007342' => 'dca', 'DCAR_024228' => 'dca', 'DCAR_027277' => 'dca', 'DCAR_030718' => 'dca', 'Dinv20287' => 'din', 'Dinv22461' => 'din', 'Dinv22464' => 'din', 'Dinv29912' => 'din', 'Dinv29913' => 'din', 'Dinv34580' => 'din', 'Dinv34582' => 'din', 'Dinv44632' => 'din', 'Duzib052G0266' => 'dzi', 'Duzib133G0907' => 'dzi', 'Duzib133G1034' => 'dzi', 'Duzib138G0207' => 'dzi', 'Duzib138G0491' => 'dzi', 'Duzib151G0812' => 'dzi', 'Duzib151G1166' => 'dzi', 'Duzib168G0192' => 'dzi', 'Duzib211G0077' => 'dzi', 'Duzib212G0429' => 'dzi', 'Duzib212G0472' => 'dzi', 'ECA233G2617' => 'eca', 'ECA236G4188' => 'eca', 'ECA240G0936' => 'eca', 'ECA240G1129' => 'eca', 'ECA247G0623' => 'eca', 'EL10Ac5g10451' => 'bvu', 'EL10Ac5g10453' => 'bvu', 'EL10Ac5g10894' => 'bvu', 'Eucgr.H00192' => 'egr', 'Eucgr.H00193' => 'egr', 'Eucgr.H00194' => 'egr', 'Eucgr.J01562' => 'egr', 'Eucgr.K03301' => 'egr', 'FAN02G0632' => 'fan', 'FAN05G5378' => 'fan', 'FAN09G3247' => 'fan', 'FAN12G0435' => 'fan', 'FAN12G2426' => 'fan', 'FAN14G1707' => 'fan', 'FAN14G4725' => 'fan', 'FAN15G2071' => 'fan', 'FAN17G3065' => 'fan', 'FAN19G1376' => 'fan', 'FAN20G0354' => 'fan', 'FAN20G2429' => 'fan', 'FAN20G2658' => 'fan', 'FAN24G2343' => 'fan', 'FAN27G2362' => 'fan', 'FAN28G1765' => 'fan', 'FvH4_1g16020' => 'fve', 'FvH4_2g04890' => 'fve', 'FvH4_2g22270' => 'fve', 'FvH4_4g02630' => 'fve', 'FvH4_4g02640' => 'fve', 'FvH4_6g02650' => 'fve', 'Glyma.02G140600' => 'gma', 'Glyma.03G159900' => 'gma', 'Glyma.05G234800' => 'gma', 'Glyma.07G269600' => 'gma', 'Glyma.08G042300' => 'gma', 'Glyma.10G033500' => 'gma', 'Glyma.10G185200' => 'gma', 'Glyma.17G004300' => 'gma', 'Glyma.19G161900' => 'gma', 'Glyma.20G205100' => 'gma', 'Glyma.20G205200' => 'gma', 'Gohir.A01G139101' => 'ghi', 'Gohir.A02G035600' => 'ghi', 'Gohir.A02G117901' => 'ghi', 'Gohir.A07G210100' => 'ghi', 'Gohir.A07G210200' => 'ghi', 'Gohir.A08G061100' => 'ghi', 'Gohir.A09G223000' => 'ghi', 'Gohir.A09G223100' => 'ghi', 'Gohir.A10G113900' => 'ghi', 'Gohir.A10G114000' => 'ghi', 'Gohir.D02G042300' => 'ghi', 'Gohir.D07G216100' => 'ghi', 'Gohir.D07G216200' => 'ghi', 'Gohir.D08G070400' => 'ghi', 'Gohir.D09G225000' => 'ghi', 'Gohir.D09G225100' => 'ghi', 'Gohir.D10G152300' => 'ghi', 'Gohir.D10G153200' => 'ghi', 'Gohir.D11G133701' => 'ghi', 'Gorai.004G074100' => 'gra', 'Gorai.005G046800' => 'gra', 'Gorai.006G246500' => 'gra', 'Gorai.006G246600' => 'gra', 'Gorai.007G142900' => 'gra', 'Gorai.011G171000' => 'gra', 'Gorai.011G171100' => 'gra', 'Gorai.013G104300' => 'gra', 'Gorai.013G104400' => 'gra', 'GSVIVG01000754001' => 'vvi', 'GSVIVG01000756001' => 'vvi', 'GSVIVG01010903001' => 'vvi', 'GSVIVG01017623001' => 'vvi', 'GSVIVG01018113001' => 'vvi', 'GSVIVG01018116001' => 'vvi', 'GSVIVG01018118001' => 'vvi', 'HanXRQChr03g0076211' => 'han', 'HanXRQChr03g0092431' => 'han', 'HanXRQChr03g0092441' => 'han', 'HanXRQChr03g0092591' => 'han', 'HanXRQChr03g0092671' => 'han', 'HanXRQChr03g0092681' => 'han', 'HanXRQChr03g0092691' => 'han', 'HanXRQChr03g0092701' => 'han', 'HanXRQChr03g0092721' => 'han', 'HanXRQChr03g0092731' => 'han', 'HanXRQChr04g0113681' => 'han', 'HanXRQChr10g0281371' => 'han', 'HanXRQChr11g0337141' => 'han', 'HanXRQChr13g0424521' => 'han', 'HanXRQChr13g0424531' => 'han', 'HanXRQChr13g0424541' => 'han', 'HanXRQChr16g0498221' => 'han', 'Haze_04377' => 'cav', 'Haze_11298' => 'cav', 'Haze_24547' => 'cav', 'Haze_24550' => 'cav', 'Haze_26587' => 'cav', 'Hma1.2p1_0650F.1_g195410' => 'hma', 'Hma1.2p1_0893F.1_g233470' => 'hma', 'HPP92_006508' => 'vpl', 'HPP92_024780' => 'vpl', 'Hund02688' => 'sun', 'Hund09380' => 'sun', 'Hund09381' => 'sun', 'Hund09832' => 'sun', 'Hund09833' => 'sun', 'Hund11351' => 'sun', 'Hund11513' => 'sun', 'Lalb_Chr06g0162591' => 'lal', 'Lalb_Chr06g0162601' => 'lal', 'Lalb_Chr06g0169321' => 'lal', 'Lalb_Chr09g0330951' => 'lal', 'Lalb_Chr16g0387631' => 'lal', 'Lalb_Chr21g0306241' => 'lal', 'Lalb_Chr25g0290051' => 'lal', 'Lalb_Chr25g0290061' => 'lal', 'Lalb_Chr25g0290071' => 'lal', 'Lj1g0003876' => 'lja', 'Lj1P1207T36' => 'lonja', 'Lj2C1156G12' => 'lonja', 'Lj3A793G39' => 'lonja', 'Lj3C580G2' => 'lonja', 'Lj3C780G2' => 'lonja', 'Lj3C780T4' => 'lonja', 'Lj3C793G9' => 'lonja', 'Lj4g0012960' => 'lja', 'Lj5g0021252' => 'lja', 'Lj5g0021484' => 'lja', 'Lj5g0024528' => 'lja', 'Lj6A399T12' => 'lonja', 'Lj6A656G65' => 'lonja', 'Lsat_1_v5_gn_3_125500' => 'lsa', 'Lsat_1_v5_gn_3_125540' => 'lsa', 'Lsat_1_v5_gn_5_72701' => 'lsa', 'Lsat_1_v5_gn_8_91560' => 'lsa', 'Lsat_1_v5_gn_9_9640' => 'lsa', 'Manes.01G200600' => 'mes', 'Manes.01G200700' => 'mes', 'Manes.03G168900' => 'mes', 'Manes.03G169000' => 'mes', 'Manes.05G085801' => 'mes', 'Manes.05G086200' => 'mes', 'Manes.15G036700' => 'mes', 'Manes.15G036900' => 'mes', 'Mapoly0004s0172' => 'mpo', 'Mapoly0023s0001' => 'mpo', 'Mapoly0142s0012' => 'mpo', 'MBI01_g32854_MAGBIO' => 'mbi', 'MBI11_g24427_MAGBIO' => 'mbi', 'MBI11_g47319_MAGBIO' => 'mbi', 'MCO01G433' => 'mco', 'MD00G1187800' => 'mdo', 'MD04G1226500' => 'mdo', 'MD05G1203900' => 'mdo', 'MD10G1191100' => 'mdo', 'MD12G1243500' => 'mdo', 'MD13G1207000' => 'mdo', 'MD13G1207100' => 'mdo', 'MD16G1208600' => 'mdo', 'Medtr1g050352' => 'mtr', 'Medtr1g070385' => 'mtr', 'Medtr1g070450' => 'mtr', 'Medtr1g075200' => 'mtr', 'Medtr1g075250' => 'mtr', 'Medtr1g075260' => 'mtr', 'Medtr1g475250' => 'mtr', 'Medtr4g075450' => 'mtr', 'Medtr7g096300' => 'mtr', 'Medtr8g105110' => 'mtr', 'MELO3C006470.2' => 'cme', 'MELO3C006471.2' => 'cme', 'MELO3C020772.2' => 'cme', 'MELO3C026780.2' => 'cme', 'MELO3C026781.2' => 'cme', 'Migut.D00390' => 'egut', 'Migut.G00435' => 'egut', 'Migut.G00436' => 'egut', 'Migut.G00718' => 'egut', 'MSTRG.21891' => 'ama', 'MSTRG.26910' => 'ama', 'MSTRG.4099' => 'ama', 'MSTRG.9925' => 'ama', 'Nitab4.5_0000165g0010' => 'nta', 'Nitab4.5_0000209g0180' => 'nta', 'Nitab4.5_0000244g0440' => 'nta', 'Nitab4.5_0000525g0220' => 'nta', 'Nitab4.5_0001597g0020' => 'nta', 'Nitab4.5_0001878g0040' => 'nta', 'Nitab4.5_0001878g0060' => 'nta', 'Nitab4.5_0002838g0100' => 'nta', 'Nitab4.5_0002838g0120' => 'nta', 'Nitab4.5_0004798g0030' => 'nta', 'Nitab4.5_0005420g0010' => 'nta', 'Nitab4.5_0005507g0010' => 'nta', 'Nitab4.5_0005574g0020' => 'nta', 'Nitab4.5_0005838g0010' => 'nta', 'Nitab4.5_0010580g0020' => 'nta', 'Nn1g02599' => 'nnu', 'Nn1g02608' => 'nnu', 'Nn3g17742' => 'nnu', 'Nn3g19534' => 'nnu', 'Nn3g19535' => 'nnu', 'Oeu008790.1' => 'oeu', 'Oeu008792.1' => 'oeu', 'Oeu032590.1' => 'oeu', 'Oeu035349.1' => 'oeu', 'Oeu049791.1' => 'oeu', 'Os01g0774500' => 'osa', 'Os03g0628800' => 'osa', 'Os03g0798600' => 'osa', 'Os05g0508800' => 'osa', 'Peaxi162Scf00036g02018' => 'pax', 'Peaxi162Scf00578g00032' => 'pax', 'Peaxi162Scf00578g00317' => 'pax', 'Peaxi162Scf00785g00114' => 'pax', 'Peaxi162Scf00813g00119' => 'pax', 'Peaxi162Scf00906g00227' => 'pax', 'PGR004G0875' => 'pgr', 'PGR004G2424' => 'pgr', 'PGR031G1239' => 'pgr', 'PGR031G2474' => 'pgr', 'PGR044G0423' => 'pgr', 'PGSC0003DMG400001128' => 'stu', 'PGSC0003DMG400007336' => 'stu', 'PGSC0003DMG400016318' => 'stu', 'PGSC0003DMG400016319' => 'stu', 'PGSC0003DMG400018074' => 'stu', 'Phvul.001G157700' => 'pvu', 'Phvul.002G148550' => 'pvu', 'Phvul.002G320200' => 'pvu', 'Phvul.003G089200' => 'pvu', 'Phvul.007G126000' => 'pvu', 'Phvul.007G126100' => 'pvu', 'Phvul.007G178000' => 'pvu', 'Phvul.007G178200' => 'pvu', 'Potri.002G043000' => 'ptr', 'Potri.002G043200' => 'ptr', 'Potri.003G123750' => 'ptr', 'Potri.005G055401' => 'ptr', 'Potri.005G219700' => 'ptr', 'Potri.005G220000' => 'ptr', 'Potri.008G161901' => 'ptr', 'Potri.008G162000' => 'ptr', 'Potri.008G162400' => 'ptr', 'Potri.010G076900' => 'ptr', 'Pp3c12_9180' => 'ppa', 'Pp3c13_19770' => 'ppa', 'Pp3c14_22950' => 'ppa', 'Pp3c16_12160' => 'ppa', 'Pp3c27_7820' => 'ppa', 'Pp3c2_3490' => 'ppa', 'Pp3c3_23700' => 'ppa', 'Pp3c3_36520' => 'ppa', 'Pp3c4_15250' => 'ppa', 'PRCOL_00007002' => 'pco', 'Prupe.1G030600' => 'ppe', 'Prupe.1G030700' => 'ppe', 'Prupe.6G345200' => 'ppe', 'Prupe.8G230300' => 'ppe', 'Prupe.8G230500' => 'ppe', 'Psat3g059600' => 'psa', 'Psat5g200920' => 'psa', 'Psat6g056440' => 'psa', 'Psat6g057360' => 'psa', 'Psat6g134120' => 'psa', 'Psat6g134160' => 'psa', 'Psat7g008640' => 'psa', 'Psat7g185240' => 'psa', 'PSO017G1330' => 'pso', 'PSO063G6097' => 'pso', 'PSO170G0835' => 'pso', 'PSO170G2499' => 'pso', 'PSO210G5058' => 'pso', 'PSO210G6154' => 'pso', 'PSO585G0031' => 'pso', 'PSO832G0264' => 'pso', 'PSO832G4288' => 'pso', 'QL03p027355' => 'qlo', 'QL03p027430' => 'qlo', 'QL04p081380' => 'qlo', 'QL06p015642' => 'qlo', 'QL06p015650' => 'qlo', 'QL06p015686' => 'qlo', 'QL12p042927' => 'qlo', 'QL93p1863_0035' => 'qlo', 'RcHm_v2.0_Chr3g0450581' => 'rch', 'RcHm_v2.0_Chr4g0390371' => 'rch', 'RcHm_v2.0_Chr4g0390381' => 'rch', 'RcHm_v2.0_Chr4g0390491' => 'rch', 'RcHm_v2.0_Chr4g0390501' => 'rch', 'RcHm_v2.0_Chr6g0289231' => 'rch', 'Rhsim04G0190400' => 'rsi', 'Rhsim04G0190500' => 'rsi', 'Rhsim04G0190600' => 'rsi', 'Rhsim13G0031400' => 'rsi', 'Rhsim13G0165600' => 'rsi', 'RhsimUnG0114600' => 'rsi', 'RhsimUnG0114700' => 'rsi', 'Sabra02G0034800' => 'sbr', 'Sabra02G0035100' => 'sbr', 'Sabra05G0168600' => 'sbr', 'Sabra05G0168800' => 'sbr', 'Sabra08G0123700' => 'sbr', 'Sabra10G0031900' => 'sbr', 'Sabra13G0039000' => 'sbr', 'SalBow2G0782' => 'sbo', 'SalBow2G1403' => 'sbo', 'SalBow4G0074' => 'sbo', 'SalBow4G2635' => 'sbo', 'SalBow5G3010' => 'sbo', 'Sc05g0000870' => 'sci', 'Sc05g0000890' => 'sci', 'Sc13g0005000' => 'sci', 'Sc13g0005030' => 'sci', 'Sc19g0003790' => 'sci', 'Sc19g0003800' => 'sci', 'Sed0003467' => 'sed', 'Sed0009355' => 'sed', 'Sed0009894' => 'sed', 'Sed0011972' => 'sed', 'Sed0021483' => 'sed', 'Sed0021750' => 'sed', 'Sed0026279' => 'sed', 'SEGI_05312' => 'sgi', 'SEGI_10112' => 'sgi', 'SEGI_15835' => 'sgi', 'SEGI_30386' => 'sgi', 'SEGI_34122' => 'sgi', 'SEGI_35063' => 'sgi', 'SGA_v2.0_scaffold101G29794' => 'sas', 'SGA_v2.0_scaffold1G00573' => 'sas', 'SGA_v2.0_scaffold79G25637' => 'sas', 'SGA_v2.0_scaffold88G27283' => 'sas', 'SGA_v2.0_scaffold88G27285' => 'sas', 'SGA_v2.0_scaffold88G27331' => 'sas', 'SHI09937' => 'shi', 'SMO119G0302' => 'smo', 'SMO137G0231' => 'smo', 'SMO367G1151' => 'smo', 'Solyc02g082000.3' => 'sly', 'Solyc06g031670.3' => 'sly', 'Solyc06g053810.3' => 'sly', 'Solyc07g025457.1' => 'sly', 'Solyc08g059740.1' => 'sly', 'Solyc08g059750.3' => 'sly', 'Solyc09g083370.3' => 'sly', 'Solyc12g038950.3' => 'sly', 'Sopen02g026630' => 'spe', 'Sopen06g018930' => 'spe', 'Sopen06g018940' => 'spe', 'Sopen08g009460' => 'spe', 'Sopen09g032290' => 'spe', 'Sp1g03080' => 'spa', 'Sp1g03090' => 'spa', 'Sp1g05480' => 'spa', 'Sp2g07860' => 'spa', 'Sp2g08430' => 'spa', 'Sp2g08440' => 'spa', 'Sp2g26200' => 'spa', 'Sp4g13170' => 'spa', 'Sp6g33840' => 'spa', 'SpUn1204_0010' => 'spa', 'TAR365G0908' => 'tar', 'TAR381G1270' => 'tar', 'TAR381G1651' => 'tar', 'TAR625G1131' => 'tar', 'TAR633G0962' => 'tar', 'TAR633G1729' => 'tar', 'TAR633G1864' => 'tar', 'TAR636G0221' => 'tar', 'TAR636G0314' => 'tar', 'TAR636G3202' => 'tar', 'THA.LOC104800805' => 'tha', 'THA.LOC104801096' => 'tha', 'THA.LOC104801555' => 'tha', 'THA.LOC104808491' => 'tha', 'THA.LOC104808595' => 'tha', 'THA.LOC104815985' => 'tha', 'THA.LOC104822250' => 'tha', 'THA.LOC104826071' => 'tha', 'Thecc.01G265200' => 'tca', 'Thecc.01G265300' => 'tca', 'Thecc.01G265700' => 'tca', 'Thecc.03G109100' => 'tca', 'Thecc.04G245900' => 'tca', 'Thecc.04G246000' => 'tca', 'Thhalv10003334m.g' => 'esa', 'Thhalv10005508m.g' => 'esa', 'Thhalv10005643m.g' => 'esa', 'Thhalv10007316m.g' => 'esa', 'Thhalv10009006m.g' => 'esa', 'Thhalv10009309m.g' => 'esa', 'Thhalv10014917m.g' => 'esa', 'Thhalv10014919m.g' => 'esa', 'Thhalv10015393m.g' => 'esa', 'Thhalv10016515m.g' => 'esa', 'Thhalv10029242m.g' => 'esa', 'TPR.G16654' => 'tpr', 'TPR.G20589' => 'tpr', 'TPR.G23029' => 'tpr', 'TPR.G27731' => 'tpr', 'TPR.G28889' => 'tpr', 'TPR.G28899' => 'tpr', 'TPR.G30846' => 'tpr', 'TPR.G5452' => 'tpr', 'TPR.G5713' => 'tpr', 'TPR.G9046' => 'tpr', 'TPR.G9061' => 'tpr', 'TWI09G1075' => 'twi', 'TWI12G0806' => 'twi', 'TWI18G0108' => 'twi', 'TWI53G1361' => 'twi', 'TWI73G0185' => 'twi', 'TWI73G0427' => 'twi', 'unitig_37.g12001' => 'ugi', 'unitig_747.g21660' => 'ugi', 'unitig_748.g7232' => 'ugi', 'unitig_748.g7315' => 'ugi', 'unitig_85.g27262' => 'ugi', 'unitig_92.g28220' => 'ugi', 'vmacro02632' => 'vma', 'vmacro08410' => 'vma', 'vmacro08411' => 'vma', 'vmacro15407' => 'vma', 'VMungo0251G3619' => 'vmu', 'VMungo0720G1204' => 'vmu', 'VMungo0720G1918' => 'vmu', 'VMungo0720G2387' => 'vmu', 'VMungo0720G2961' => 'vmu', 'VMungo1215G2154' => 'vmu', 'VMungo1383G2411' => 'vmu', 'Zm00001eb051130' => 'zma', 'Zm00001eb116830' => 'zma', 'Zm00001eb116850' => 'zma', 'Zm00001eb151740' => 'zma', 'Zm00001eb292360' => 'zma', 'Zm00001eb301640' => 'zma' ) $gf_id = 'HOM05D000856' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000856' ) $data_identifier = 'HOM05D000856' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 13, 'ath' => (int) 10, 'atr' => (int) 1, 'acertr' => (int) 8, 'cqu' => (int) 6, 'bca' => (int) 21, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 11, 'car' => (int) 9, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 8, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 5, 'fan' => (int) 16, 'fve' => (int) 6, 'gma' => (int) 11, 'ghi' => (int) 19, 'gra' => (int) 9, 'vvi' => (int) 7, 'han' => (int) 17, 'cav' => (int) 5, 'hma' => (int) 2, 'vpl' => (int) 2, 'sun' => (int) 7, 'lal' => (int) 9, 'lja' => (int) 5, 'lonja' => (int) 9, 'lsa' => (int) 5, 'mes' => (int) 8, 'mpo' => (int) 3, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 10, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 15, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 9, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 9, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 6, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 5, 'spa' => (int) 10, 'tar' => (int) 10, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 11, 'tpr' => (int) 11, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 4, 'vmu' => (int) 7, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb301640' $species_info = array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ) $local_species = 'pco' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000856', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p00010' => 'bna', 'A03p04160' => 'bna', 'A03p17160' => 'bna', 'A04p23370' => 'bna', 'A05p14860' => 'bna', 'A08p37020' => 'bna', 'A09p08050' => 'bna', 'A09p66800' => 'bna', 'A09p67940' => 'bna', 'A10p02680' => 'bna', 'A10p05320' => 'bna', 'Aa31LG1G20560' => 'aar', 'Aa31LG1G20610' => 'aar', 'Aa31LG1G7810' => 'aar', 'Aa31LG5G3590' => 'aar', 'Aa31LG5G6140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3819' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4683' => 'aag', 'Actinidia04480' => 'ach', 'Actinidia05466' => 'ach', 'Actinidia08445' => 'ach', 'Actinidia21170' => 'ach', 'Actinidia24812' => 'ach', 'Actinidia24951' => 'ach', 'Actinidia40088' => 'ach', 'Ah.02g111660' => 'amhyb', 'Ah.11g048900' => 'amhyb', 'Ah.11g049910' => 'amhyb', 'AL1G13870' => 'aly', 'AL1G13880' => 'aly', 'AL1G16760' => 'aly', 'AL390U10020' => 'aly', 'AL4G25520' => 'aly', 'AL6G19890' => 'aly', 'AL6G19900' => 'aly', 'AL6G19910' => 'aly', 'AL8G40100' => 'aly', 'Aqoxy2G03562' => 'aox', 'Aqoxy5G00316' => 'aox', 'Aqoxy5G00926' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1628KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1H403S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2FU6SJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.882I6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8YRY2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YN1SN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AF70II' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZA8L1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F916KL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHRD8H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KTZ8QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S22EMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8M29T' => 'arhy', 'AT1G04270' => 'ath', 'AT1G04280' => 'ath', 'AT1G06750' => 'ath', 'AT1G33850' => 'ath', 'AT2G30630' => 'ath', 'AT5G09490' => 'ath', 'AT5G09500' => 'ath', 'AT5G09510' => 'ath', 'AT5G43640' => 'ath', 'AT5G63070' => 'ath', 'ATR0605G315' => 'atr', 'Atru.chr11.175' => 'acertr', 'Atru.chr11.653' => 'acertr', 'Atru.chr3.1616' => 'acertr', 'Atru.chr4.2230' => 'acertr', 'Atru.chr4.2232' => 'acertr', 'Atru.chr5.1598' => 'acertr', 'Atru.chr5.1600' => 'acertr', 'Atru.chr5.2188' => 'acertr', 'AUR62008326' => 'cqu', 'AUR62011922' => 'cqu', 'AUR62011924' => 'cqu', 'AUR62021771' => 'cqu', 'AUR62032237' => 'cqu', 'AUR62032240' => 'cqu', 'BcaB01g05572' => 'bca', 'BcaB02g10337' => 'bca', 'BcaB04g19944' => 'bca', 'BcaB05g21548' => 'bca', 'BcaB05g21549' => 'bca', 'BcaB05g23227' => 'bca', 'BcaB06g26256' => 'bca', 'BcaB06g26257' => 'bca', 'BcaB06g28379' => 'bca', 'BcaC02g11159' => 'bca', 'BcaC03g13258' => 'bca', 'BcaC03g13259' => 'bca', 'BcaC05g24456' => 'bca', 'BcaC05g24457' => 'bca', 'BcaC07g36922' => 'bca', 'BcaC07g36923' => 'bca', 'BcaC07g42050' => 'bca', 'BcaC07g42176' => 'bca', 'BcaC07g42195' => 'bca', 'BcaC07g42196' => 'bca', 'BcaNung06674' => 'bca', 'BolC2t06351H' => 'bol', 'BolC2t06352H' => 'bol', 'BolC3t12993H' => 'bol', 'BolC4t23525H' => 'bol', 'BolC4t27475H' => 'bol', 'BolC5t29025H' => 'bol', 'BolC5t29026H' => 'bol', 'BolC8t46898H' => 'bol', 'BolC8t46899H' => 'bol', 'BolC8t52630H' => 'bol', 'BolC8t52765H' => 'bol', 'BolC9t53824H' => 'bol', 'BraA03t09760Z' => 'bra', 'BraA03t10990Z' => 'bra', 'BraA05t20413Z' => 'bra', 'BraA08t35602Z' => 'bra', 'BraA09t36458Z' => 'bra', 'BraA09t42018Z' => 'bra', 'BraA09t42129Z' => 'bra', 'BraA10t42536Z' => 'bra', 'BraA10t42537Z' => 'bra', 'C01p10690' => 'bna', 'C02p03890' => 'bna', 'C02p03900' => 'bna', 'C03p04620' => 'bna', 'C04p19870' => 'bna', 'C04p59670' => 'bna', 'C05p02460' => 'bna', 'C05p02470' => 'bna', 'C08p00980' => 'bna', 'C08p00990' => 'bna', 'C08p51030' => 'bna', 'C08p52360' => 'bna', 'C09p09120' => 'bna', 'CAN.G19.15' => 'can', 'CAN.G251.10' => 'can', 'CAN.G251.9' => 'can', 'CAN.G398.24' => 'can', 'CAN.G410.32' => 'can', 'CAN.G881.2' => 'can', 'CANSAT01G3025' => 'cansat', 'CANSAT78G1211' => 'cansat', 'CANSAT78G1218' => 'cansat', 'CANSAT78G1521' => 'cansat', 'CANSAT78G1670' => 'cansat', 'CARHR003600' => 'chi', 'CARHR003610' => 'chi', 'CARHR006290' => 'chi', 'CARHR006430' => 'chi', 'CARHR124110' => 'chi', 'CARHR203870' => 'chi', 'CARHR203880' => 'chi', 'CARHR203890' => 'chi', 'CARHR276880' => 'chi', 'Carub.0001s0346' => 'cru', 'Carub.0001s0347' => 'cru', 'Carub.0001s0607' => 'cru', 'Carub.0003s2768' => 'cru', 'Carub.0003s2769' => 'cru', 'Carub.0004s1178' => 'cru', 'Carub.0006s0806' => 'cru', 'Carub.0006s0807' => 'cru', 'Carub.0006s0808' => 'cru', 'Carub.0008s0501' => 'cru', 'Carub.0008s2379' => 'cru', 'Ca_08655_v3' => 'car', 'Ca_08922_v3' => 'car', 'Ca_08923_v3' => 'car', 'Ca_09119_v3' => 'car', 'Ca_09703_v3' => 'car', 'Ca_09705_v3' => 'car', 'Ca_09835_v3' => 'car', 'Ca_26403_v3' => 'car', 'Ca_30719_v3' => 'car', 'CBR_g17958' => 'cbr', 'CBR_g40516' => 'cbr', 'Cc00_g05350' => 'ccan', 'Cc01_g18690' => 'ccan', 'Cc03_g04830' => 'ccan', 'Cc03_g04850' => 'ccan', 'CDE02G4469' => 'cde', 'CDE06G0883' => 'cde', 'CDE06G1295' => 'cde', 'CDE06G1390' => 'cde', 'CDE07G0584' => 'cde', 'CDE07G1084' => 'cde', 'CDE08G1259' => 'cde', 'Cfa002341' => 'cfa', 'Cfa024337' => 'cfa', 'Ciclev10004749m.g' => 'ccl', 'Ciclev10006127m.g' => 'ccl', 'Ciclev10019720m.g' => 'ccl', 'Ciclev10022652m.g' => 'ccl', 'CiPaw.01G190400' => 'cil', 'CiPaw.01G190500' => 'cil', 'CiPaw.02G116400' => 'cil', 'CiPaw.02G116500' => 'cil', 'CiPaw.04G183000' => 'cil', 'CiPaw.04G183300' => 'cil', 'ClCG05G004610' => 'cla', 'ClCG05G004620' => 'cla', 'ClCG06G006730' => 'cla', 'ClCG06G006740' => 'cla', 'ClCG11G003690' => 'cla', 'COL.COLO4_08276' => 'col', 'COL.COLO4_08277' => 'col', 'COL.COLO4_15787' => 'col', 'COL.COLO4_15789' => 'col', 'Cpa.g.c44815' => 'cpa', 'Cpa.g.sc52.144' => 'cpa', 'Cpa.g.sc58.46' => 'cpa', 'Cpa.g.sc58.47' => 'cpa', 'Cre08.g360900' => 'cre', 'CsaV3_2G013030' => 'csa', 'CsaV3_2G013050' => 'csa', 'CsaV3_2G015620' => 'csa', 'CsaV3_3G012590' => 'csa', 'CsaV3_3G012600' => 'csa', 'CSS0001641' => 'camsi', 'CSS0008310' => 'camsi', 'CSS0013011' => 'camsi', 'CSS0017147' => 'camsi', 'CSS0022970' => 'camsi', 'CSS0025655' => 'camsi', 'CSS0028665' => 'camsi', 'CSS0029117' => 'camsi', 'CSS0032024' => 'camsi', 'CSS0039681' => 'camsi', 'CSS0046516' => 'camsi', 'CSS0050307' => 'camsi', 'DCAR_005871' => 'dca', 'DCAR_007342' => 'dca', 'DCAR_024228' => 'dca', 'DCAR_027277' => 'dca', 'DCAR_030718' => 'dca', 'Dinv20287' => 'din', 'Dinv22461' => 'din', 'Dinv22464' => 'din', 'Dinv29912' => 'din', 'Dinv29913' => 'din', 'Dinv34580' => 'din', 'Dinv34582' => 'din', 'Dinv44632' => 'din', 'Duzib052G0266' => 'dzi', 'Duzib133G0907' => 'dzi', 'Duzib133G1034' => 'dzi', 'Duzib138G0207' => 'dzi', 'Duzib138G0491' => 'dzi', 'Duzib151G0812' => 'dzi', 'Duzib151G1166' => 'dzi', 'Duzib168G0192' => 'dzi', 'Duzib211G0077' => 'dzi', 'Duzib212G0429' => 'dzi', 'Duzib212G0472' => 'dzi', 'ECA233G2617' => 'eca', 'ECA236G4188' => 'eca', 'ECA240G0936' => 'eca', 'ECA240G1129' => 'eca', 'ECA247G0623' => 'eca', 'EL10Ac5g10451' => 'bvu', 'EL10Ac5g10453' => 'bvu', 'EL10Ac5g10894' => 'bvu', 'Eucgr.H00192' => 'egr', 'Eucgr.H00193' => 'egr', 'Eucgr.H00194' => 'egr', 'Eucgr.J01562' => 'egr', 'Eucgr.K03301' => 'egr', 'FAN02G0632' => 'fan', 'FAN05G5378' => 'fan', 'FAN09G3247' => 'fan', 'FAN12G0435' => 'fan', 'FAN12G2426' => 'fan', 'FAN14G1707' => 'fan', 'FAN14G4725' => 'fan', 'FAN15G2071' => 'fan', 'FAN17G3065' => 'fan', 'FAN19G1376' => 'fan', 'FAN20G0354' => 'fan', 'FAN20G2429' => 'fan', 'FAN20G2658' => 'fan', 'FAN24G2343' => 'fan', 'FAN27G2362' => 'fan', 'FAN28G1765' => 'fan', 'FvH4_1g16020' => 'fve', 'FvH4_2g04890' => 'fve', 'FvH4_2g22270' => 'fve', 'FvH4_4g02630' => 'fve', 'FvH4_4g02640' => 'fve', 'FvH4_6g02650' => 'fve', 'Glyma.02G140600' => 'gma', 'Glyma.03G159900' => 'gma', 'Glyma.05G234800' => 'gma', 'Glyma.07G269600' => 'gma', 'Glyma.08G042300' => 'gma', 'Glyma.10G033500' => 'gma', 'Glyma.10G185200' => 'gma', 'Glyma.17G004300' => 'gma', 'Glyma.19G161900' => 'gma', 'Glyma.20G205100' => 'gma', 'Glyma.20G205200' => 'gma', 'Gohir.A01G139101' => 'ghi', 'Gohir.A02G035600' => 'ghi', 'Gohir.A02G117901' => 'ghi', 'Gohir.A07G210100' => 'ghi', 'Gohir.A07G210200' => 'ghi', 'Gohir.A08G061100' => 'ghi', 'Gohir.A09G223000' => 'ghi', 'Gohir.A09G223100' => 'ghi', 'Gohir.A10G113900' => 'ghi', 'Gohir.A10G114000' => 'ghi', 'Gohir.D02G042300' => 'ghi', 'Gohir.D07G216100' => 'ghi', 'Gohir.D07G216200' => 'ghi', 'Gohir.D08G070400' => 'ghi', 'Gohir.D09G225000' => 'ghi', 'Gohir.D09G225100' => 'ghi', 'Gohir.D10G152300' => 'ghi', 'Gohir.D10G153200' => 'ghi', 'Gohir.D11G133701' => 'ghi', 'Gorai.004G074100' => 'gra', 'Gorai.005G046800' => 'gra', 'Gorai.006G246500' => 'gra', 'Gorai.006G246600' => 'gra', 'Gorai.007G142900' => 'gra', 'Gorai.011G171000' => 'gra', 'Gorai.011G171100' => 'gra', 'Gorai.013G104300' => 'gra', 'Gorai.013G104400' => 'gra', 'GSVIVG01000754001' => 'vvi', 'GSVIVG01000756001' => 'vvi', 'GSVIVG01010903001' => 'vvi', 'GSVIVG01017623001' => 'vvi', 'GSVIVG01018113001' => 'vvi', 'GSVIVG01018116001' => 'vvi', 'GSVIVG01018118001' => 'vvi', 'HanXRQChr03g0076211' => 'han', 'HanXRQChr03g0092431' => 'han', 'HanXRQChr03g0092441' => 'han', 'HanXRQChr03g0092591' => 'han', 'HanXRQChr03g0092671' => 'han', 'HanXRQChr03g0092681' => 'han', 'HanXRQChr03g0092691' => 'han', 'HanXRQChr03g0092701' => 'han', 'HanXRQChr03g0092721' => 'han', 'HanXRQChr03g0092731' => 'han', 'HanXRQChr04g0113681' => 'han', 'HanXRQChr10g0281371' => 'han', 'HanXRQChr11g0337141' => 'han', 'HanXRQChr13g0424521' => 'han', 'HanXRQChr13g0424531' => 'han', 'HanXRQChr13g0424541' => 'han', 'HanXRQChr16g0498221' => 'han', 'Haze_04377' => 'cav', 'Haze_11298' => 'cav', 'Haze_24547' => 'cav', 'Haze_24550' => 'cav', 'Haze_26587' => 'cav', 'Hma1.2p1_0650F.1_g195410' => 'hma', 'Hma1.2p1_0893F.1_g233470' => 'hma', 'HPP92_006508' => 'vpl', 'HPP92_024780' => 'vpl', 'Hund02688' => 'sun', 'Hund09380' => 'sun', 'Hund09381' => 'sun', 'Hund09832' => 'sun', 'Hund09833' => 'sun', 'Hund11351' => 'sun', 'Hund11513' => 'sun', 'Lalb_Chr06g0162591' => 'lal', 'Lalb_Chr06g0162601' => 'lal', 'Lalb_Chr06g0169321' => 'lal', 'Lalb_Chr09g0330951' => 'lal', 'Lalb_Chr16g0387631' => 'lal', 'Lalb_Chr21g0306241' => 'lal', 'Lalb_Chr25g0290051' => 'lal', 'Lalb_Chr25g0290061' => 'lal', 'Lalb_Chr25g0290071' => 'lal', 'Lj1g0003876' => 'lja', 'Lj1P1207T36' => 'lonja', 'Lj2C1156G12' => 'lonja', 'Lj3A793G39' => 'lonja', 'Lj3C580G2' => 'lonja', 'Lj3C780G2' => 'lonja', 'Lj3C780T4' => 'lonja', 'Lj3C793G9' => 'lonja', 'Lj4g0012960' => 'lja', 'Lj5g0021252' => 'lja', 'Lj5g0021484' => 'lja', 'Lj5g0024528' => 'lja', 'Lj6A399T12' => 'lonja', 'Lj6A656G65' => 'lonja', 'Lsat_1_v5_gn_3_125500' => 'lsa', 'Lsat_1_v5_gn_3_125540' => 'lsa', 'Lsat_1_v5_gn_5_72701' => 'lsa', 'Lsat_1_v5_gn_8_91560' => 'lsa', 'Lsat_1_v5_gn_9_9640' => 'lsa', 'Manes.01G200600' => 'mes', 'Manes.01G200700' => 'mes', 'Manes.03G168900' => 'mes', 'Manes.03G169000' => 'mes', 'Manes.05G085801' => 'mes', 'Manes.05G086200' => 'mes', 'Manes.15G036700' => 'mes', 'Manes.15G036900' => 'mes', 'Mapoly0004s0172' => 'mpo', 'Mapoly0023s0001' => 'mpo', 'Mapoly0142s0012' => 'mpo', 'MBI01_g32854_MAGBIO' => 'mbi', 'MBI11_g24427_MAGBIO' => 'mbi', 'MBI11_g47319_MAGBIO' => 'mbi', 'MCO01G433' => 'mco', 'MD00G1187800' => 'mdo', 'MD04G1226500' => 'mdo', 'MD05G1203900' => 'mdo', 'MD10G1191100' => 'mdo', 'MD12G1243500' => 'mdo', 'MD13G1207000' => 'mdo', 'MD13G1207100' => 'mdo', 'MD16G1208600' => 'mdo', 'Medtr1g050352' => 'mtr', 'Medtr1g070385' => 'mtr', 'Medtr1g070450' => 'mtr', 'Medtr1g075200' => 'mtr', 'Medtr1g075250' => 'mtr', 'Medtr1g075260' => 'mtr', 'Medtr1g475250' => 'mtr', 'Medtr4g075450' => 'mtr', 'Medtr7g096300' => 'mtr', 'Medtr8g105110' => 'mtr', 'MELO3C006470.2' => 'cme', 'MELO3C006471.2' => 'cme', 'MELO3C020772.2' => 'cme', 'MELO3C026780.2' => 'cme', 'MELO3C026781.2' => 'cme', 'Migut.D00390' => 'egut', 'Migut.G00435' => 'egut', 'Migut.G00436' => 'egut', 'Migut.G00718' => 'egut', 'MSTRG.21891' => 'ama', 'MSTRG.26910' => 'ama', 'MSTRG.4099' => 'ama', 'MSTRG.9925' => 'ama', 'Nitab4.5_0000165g0010' => 'nta', 'Nitab4.5_0000209g0180' => 'nta', 'Nitab4.5_0000244g0440' => 'nta', 'Nitab4.5_0000525g0220' => 'nta', 'Nitab4.5_0001597g0020' => 'nta', 'Nitab4.5_0001878g0040' => 'nta', 'Nitab4.5_0001878g0060' => 'nta', 'Nitab4.5_0002838g0100' => 'nta', 'Nitab4.5_0002838g0120' => 'nta', 'Nitab4.5_0004798g0030' => 'nta', 'Nitab4.5_0005420g0010' => 'nta', 'Nitab4.5_0005507g0010' => 'nta', 'Nitab4.5_0005574g0020' => 'nta', 'Nitab4.5_0005838g0010' => 'nta', 'Nitab4.5_0010580g0020' => 'nta', 'Nn1g02599' => 'nnu', 'Nn1g02608' => 'nnu', 'Nn3g17742' => 'nnu', 'Nn3g19534' => 'nnu', 'Nn3g19535' => 'nnu', 'Oeu008790.1' => 'oeu', 'Oeu008792.1' => 'oeu', 'Oeu032590.1' => 'oeu', 'Oeu035349.1' => 'oeu', 'Oeu049791.1' => 'oeu', 'Os01g0774500' => 'osa', 'Os03g0628800' => 'osa', 'Os03g0798600' => 'osa', 'Os05g0508800' => 'osa', 'Peaxi162Scf00036g02018' => 'pax', 'Peaxi162Scf00578g00032' => 'pax', 'Peaxi162Scf00578g00317' => 'pax', 'Peaxi162Scf00785g00114' => 'pax', 'Peaxi162Scf00813g00119' => 'pax', 'Peaxi162Scf00906g00227' => 'pax', 'PGR004G0875' => 'pgr', 'PGR004G2424' => 'pgr', 'PGR031G1239' => 'pgr', 'PGR031G2474' => 'pgr', 'PGR044G0423' => 'pgr', 'PGSC0003DMG400001128' => 'stu', 'PGSC0003DMG400007336' => 'stu', 'PGSC0003DMG400016318' => 'stu', 'PGSC0003DMG400016319' => 'stu', 'PGSC0003DMG400018074' => 'stu', 'Phvul.001G157700' => 'pvu', 'Phvul.002G148550' => 'pvu', 'Phvul.002G320200' => 'pvu', 'Phvul.003G089200' => 'pvu', 'Phvul.007G126000' => 'pvu', 'Phvul.007G126100' => 'pvu', 'Phvul.007G178000' => 'pvu', 'Phvul.007G178200' => 'pvu', 'Potri.002G043000' => 'ptr', 'Potri.002G043200' => 'ptr', 'Potri.003G123750' => 'ptr', 'Potri.005G055401' => 'ptr', 'Potri.005G219700' => 'ptr', 'Potri.005G220000' => 'ptr', 'Potri.008G161901' => 'ptr', 'Potri.008G162000' => 'ptr', 'Potri.008G162400' => 'ptr', 'Potri.010G076900' => 'ptr', 'Pp3c12_9180' => 'ppa', 'Pp3c13_19770' => 'ppa', 'Pp3c14_22950' => 'ppa', 'Pp3c16_12160' => 'ppa', 'Pp3c27_7820' => 'ppa', 'Pp3c2_3490' => 'ppa', 'Pp3c3_23700' => 'ppa', 'Pp3c3_36520' => 'ppa', 'Pp3c4_15250' => 'ppa', 'PRCOL_00007002' => 'pco', 'Prupe.1G030600' => 'ppe', 'Prupe.1G030700' => 'ppe', 'Prupe.6G345200' => 'ppe', 'Prupe.8G230300' => 'ppe', 'Prupe.8G230500' => 'ppe', 'Psat3g059600' => 'psa', 'Psat5g200920' => 'psa', 'Psat6g056440' => 'psa', 'Psat6g057360' => 'psa', 'Psat6g134120' => 'psa', 'Psat6g134160' => 'psa', 'Psat7g008640' => 'psa', 'Psat7g185240' => 'psa', 'PSO017G1330' => 'pso', 'PSO063G6097' => 'pso', 'PSO170G0835' => 'pso', 'PSO170G2499' => 'pso', 'PSO210G5058' => 'pso', 'PSO210G6154' => 'pso', 'PSO585G0031' => 'pso', 'PSO832G0264' => 'pso', 'PSO832G4288' => 'pso', 'QL03p027355' => 'qlo', 'QL03p027430' => 'qlo', 'QL04p081380' => 'qlo', 'QL06p015642' => 'qlo', 'QL06p015650' => 'qlo', 'QL06p015686' => 'qlo', 'QL12p042927' => 'qlo', 'QL93p1863_0035' => 'qlo', 'RcHm_v2.0_Chr3g0450581' => 'rch', 'RcHm_v2.0_Chr4g0390371' => 'rch', 'RcHm_v2.0_Chr4g0390381' => 'rch', 'RcHm_v2.0_Chr4g0390491' => 'rch', 'RcHm_v2.0_Chr4g0390501' => 'rch', 'RcHm_v2.0_Chr6g0289231' => 'rch', 'Rhsim04G0190400' => 'rsi', 'Rhsim04G0190500' => 'rsi', 'Rhsim04G0190600' => 'rsi', 'Rhsim13G0031400' => 'rsi', 'Rhsim13G0165600' => 'rsi', 'RhsimUnG0114600' => 'rsi', 'RhsimUnG0114700' => 'rsi', 'Sabra02G0034800' => 'sbr', 'Sabra02G0035100' => 'sbr', 'Sabra05G0168600' => 'sbr', 'Sabra05G0168800' => 'sbr', 'Sabra08G0123700' => 'sbr', 'Sabra10G0031900' => 'sbr', 'Sabra13G0039000' => 'sbr', 'SalBow2G0782' => 'sbo', 'SalBow2G1403' => 'sbo', 'SalBow4G0074' => 'sbo', 'SalBow4G2635' => 'sbo', 'SalBow5G3010' => 'sbo', 'Sc05g0000870' => 'sci', 'Sc05g0000890' => 'sci', 'Sc13g0005000' => 'sci', 'Sc13g0005030' => 'sci', 'Sc19g0003790' => 'sci', 'Sc19g0003800' => 'sci', 'Sed0003467' => 'sed', 'Sed0009355' => 'sed', 'Sed0009894' => 'sed', 'Sed0011972' => 'sed', 'Sed0021483' => 'sed', 'Sed0021750' => 'sed', 'Sed0026279' => 'sed', 'SEGI_05312' => 'sgi', 'SEGI_10112' => 'sgi', 'SEGI_15835' => 'sgi', 'SEGI_30386' => 'sgi', 'SEGI_34122' => 'sgi', 'SEGI_35063' => 'sgi', 'SGA_v2.0_scaffold101G29794' => 'sas', 'SGA_v2.0_scaffold1G00573' => 'sas', 'SGA_v2.0_scaffold79G25637' => 'sas', 'SGA_v2.0_scaffold88G27283' => 'sas', 'SGA_v2.0_scaffold88G27285' => 'sas', 'SGA_v2.0_scaffold88G27331' => 'sas', 'SHI09937' => 'shi', 'SMO119G0302' => 'smo', 'SMO137G0231' => 'smo', 'SMO367G1151' => 'smo', 'Solyc02g082000.3' => 'sly', 'Solyc06g031670.3' => 'sly', 'Solyc06g053810.3' => 'sly', 'Solyc07g025457.1' => 'sly', 'Solyc08g059740.1' => 'sly', 'Solyc08g059750.3' => 'sly', 'Solyc09g083370.3' => 'sly', 'Solyc12g038950.3' => 'sly', 'Sopen02g026630' => 'spe', 'Sopen06g018930' => 'spe', 'Sopen06g018940' => 'spe', 'Sopen08g009460' => 'spe', 'Sopen09g032290' => 'spe', 'Sp1g03080' => 'spa', 'Sp1g03090' => 'spa', 'Sp1g05480' => 'spa', 'Sp2g07860' => 'spa', 'Sp2g08430' => 'spa', 'Sp2g08440' => 'spa', 'Sp2g26200' => 'spa', 'Sp4g13170' => 'spa', 'Sp6g33840' => 'spa', 'SpUn1204_0010' => 'spa', 'TAR365G0908' => 'tar', 'TAR381G1270' => 'tar', 'TAR381G1651' => 'tar', 'TAR625G1131' => 'tar', 'TAR633G0962' => 'tar', 'TAR633G1729' => 'tar', 'TAR633G1864' => 'tar', 'TAR636G0221' => 'tar', 'TAR636G0314' => 'tar', 'TAR636G3202' => 'tar', 'THA.LOC104800805' => 'tha', 'THA.LOC104801096' => 'tha', 'THA.LOC104801555' => 'tha', 'THA.LOC104808491' => 'tha', 'THA.LOC104808595' => 'tha', 'THA.LOC104815985' => 'tha', 'THA.LOC104822250' => 'tha', 'THA.LOC104826071' => 'tha', 'Thecc.01G265200' => 'tca', 'Thecc.01G265300' => 'tca', 'Thecc.01G265700' => 'tca', 'Thecc.03G109100' => 'tca', 'Thecc.04G245900' => 'tca', 'Thecc.04G246000' => 'tca', 'Thhalv10003334m.g' => 'esa', 'Thhalv10005508m.g' => 'esa', 'Thhalv10005643m.g' => 'esa', 'Thhalv10007316m.g' => 'esa', 'Thhalv10009006m.g' => 'esa', 'Thhalv10009309m.g' => 'esa', 'Thhalv10014917m.g' => 'esa', 'Thhalv10014919m.g' => 'esa', 'Thhalv10015393m.g' => 'esa', 'Thhalv10016515m.g' => 'esa', 'Thhalv10029242m.g' => 'esa', 'TPR.G16654' => 'tpr', 'TPR.G20589' => 'tpr', 'TPR.G23029' => 'tpr', 'TPR.G27731' => 'tpr', 'TPR.G28889' => 'tpr', 'TPR.G28899' => 'tpr', 'TPR.G30846' => 'tpr', 'TPR.G5452' => 'tpr', 'TPR.G5713' => 'tpr', 'TPR.G9046' => 'tpr', 'TPR.G9061' => 'tpr', 'TWI09G1075' => 'twi', 'TWI12G0806' => 'twi', 'TWI18G0108' => 'twi', 'TWI53G1361' => 'twi', 'TWI73G0185' => 'twi', 'TWI73G0427' => 'twi', 'unitig_37.g12001' => 'ugi', 'unitig_747.g21660' => 'ugi', 'unitig_748.g7232' => 'ugi', 'unitig_748.g7315' => 'ugi', 'unitig_85.g27262' => 'ugi', 'unitig_92.g28220' => 'ugi', 'vmacro02632' => 'vma', 'vmacro08410' => 'vma', 'vmacro08411' => 'vma', 'vmacro15407' => 'vma', 'VMungo0251G3619' => 'vmu', 'VMungo0720G1204' => 'vmu', 'VMungo0720G1918' => 'vmu', 'VMungo0720G2387' => 'vmu', 'VMungo0720G2961' => 'vmu', 'VMungo1215G2154' => 'vmu', 'VMungo1383G2411' => 'vmu', 'Zm00001eb051130' => 'zma', 'Zm00001eb116830' => 'zma', 'Zm00001eb116850' => 'zma', 'Zm00001eb151740' => 'zma', 'Zm00001eb292360' => 'zma', 'Zm00001eb301640' => 'zma' ), 'gf_id' => 'HOM05D000856', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000856' ), 'data_identifier' => 'HOM05D000856', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000856', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p00010' => 'bna', 'A03p04160' => 'bna', 'A03p17160' => 'bna', 'A04p23370' => 'bna', 'A05p14860' => 'bna', 'A08p37020' => 'bna', 'A09p08050' => 'bna', 'A09p66800' => 'bna', 'A09p67940' => 'bna', 'A10p02680' => 'bna', 'A10p05320' => 'bna', 'Aa31LG1G20560' => 'aar', 'Aa31LG1G20610' => 'aar', 'Aa31LG1G7810' => 'aar', 'Aa31LG5G3590' => 'aar', 'Aa31LG5G6140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3819' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4683' => 'aag', 'Actinidia04480' => 'ach', 'Actinidia05466' => 'ach', 'Actinidia08445' => 'ach', 'Actinidia21170' => 'ach', 'Actinidia24812' => 'ach', 'Actinidia24951' => 'ach', 'Actinidia40088' => 'ach', 'Ah.02g111660' => 'amhyb', 'Ah.11g048900' => 'amhyb', 'Ah.11g049910' => 'amhyb', 'AL1G13870' => 'aly', 'AL1G13880' => 'aly', 'AL1G16760' => 'aly', 'AL390U10020' => 'aly', 'AL4G25520' => 'aly', 'AL6G19890' => 'aly', 'AL6G19900' => 'aly', 'AL6G19910' => 'aly', 'AL8G40100' => 'aly', 'Aqoxy2G03562' => 'aox', 'Aqoxy5G00316' => 'aox', 'Aqoxy5G00926' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1628KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1H403S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2FU6SJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.882I6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8YRY2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YN1SN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AF70II' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZA8L1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F916KL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHRD8H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KTZ8QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S22EMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8M29T' => 'arhy', 'AT1G04270' => 'ath', 'AT1G04280' => 'ath', 'AT1G06750' => 'ath', 'AT1G33850' => 'ath', 'AT2G30630' => 'ath', 'AT5G09490' => 'ath', 'AT5G09500' => 'ath', 'AT5G09510' => 'ath', 'AT5G43640' => 'ath', 'AT5G63070' => 'ath', 'ATR0605G315' => 'atr', 'Atru.chr11.175' => 'acertr', 'Atru.chr11.653' => 'acertr', 'Atru.chr3.1616' => 'acertr', 'Atru.chr4.2230' => 'acertr', 'Atru.chr4.2232' => 'acertr', 'Atru.chr5.1598' => 'acertr', 'Atru.chr5.1600' => 'acertr', 'Atru.chr5.2188' => 'acertr', 'AUR62008326' => 'cqu', 'AUR62011922' => 'cqu', 'AUR62011924' => 'cqu', 'AUR62021771' => 'cqu', 'AUR62032237' => 'cqu', 'AUR62032240' => 'cqu', 'BcaB01g05572' => 'bca', 'BcaB02g10337' => 'bca', 'BcaB04g19944' => 'bca', 'BcaB05g21548' => 'bca', 'BcaB05g21549' => 'bca', 'BcaB05g23227' => 'bca', 'BcaB06g26256' => 'bca', 'BcaB06g26257' => 'bca', 'BcaB06g28379' => 'bca', 'BcaC02g11159' => 'bca', 'BcaC03g13258' => 'bca', 'BcaC03g13259' => 'bca', 'BcaC05g24456' => 'bca', 'BcaC05g24457' => 'bca', 'BcaC07g36922' => 'bca', 'BcaC07g36923' => 'bca', 'BcaC07g42050' => 'bca', 'BcaC07g42176' => 'bca', 'BcaC07g42195' => 'bca', 'BcaC07g42196' => 'bca', 'BcaNung06674' => 'bca', 'BolC2t06351H' => 'bol', 'BolC2t06352H' => 'bol', 'BolC3t12993H' => 'bol', 'BolC4t23525H' => 'bol', 'BolC4t27475H' => 'bol', 'BolC5t29025H' => 'bol', 'BolC5t29026H' => 'bol', 'BolC8t46898H' => 'bol', 'BolC8t46899H' => 'bol', 'BolC8t52630H' => 'bol', 'BolC8t52765H' => 'bol', 'BolC9t53824H' => 'bol', 'BraA03t09760Z' => 'bra', 'BraA03t10990Z' => 'bra', 'BraA05t20413Z' => 'bra', 'BraA08t35602Z' => 'bra', 'BraA09t36458Z' => 'bra', 'BraA09t42018Z' => 'bra', 'BraA09t42129Z' => 'bra', 'BraA10t42536Z' => 'bra', 'BraA10t42537Z' => 'bra', 'C01p10690' => 'bna', 'C02p03890' => 'bna', 'C02p03900' => 'bna', 'C03p04620' => 'bna', 'C04p19870' => 'bna', 'C04p59670' => 'bna', 'C05p02460' => 'bna', 'C05p02470' => 'bna', 'C08p00980' => 'bna', 'C08p00990' => 'bna', 'C08p51030' => 'bna', 'C08p52360' => 'bna', 'C09p09120' => 'bna', 'CAN.G19.15' => 'can', 'CAN.G251.10' => 'can', 'CAN.G251.9' => 'can', 'CAN.G398.24' => 'can', 'CAN.G410.32' => 'can', 'CAN.G881.2' => 'can', 'CANSAT01G3025' => 'cansat', 'CANSAT78G1211' => 'cansat', 'CANSAT78G1218' => 'cansat', 'CANSAT78G1521' => 'cansat', 'CANSAT78G1670' => 'cansat', 'CARHR003600' => 'chi', 'CARHR003610' => 'chi', 'CARHR006290' => 'chi', 'CARHR006430' => 'chi', 'CARHR124110' => 'chi', 'CARHR203870' => 'chi', 'CARHR203880' => 'chi', 'CARHR203890' => 'chi', 'CARHR276880' => 'chi', 'Carub.0001s0346' => 'cru', 'Carub.0001s0347' => 'cru', 'Carub.0001s0607' => 'cru', 'Carub.0003s2768' => 'cru', 'Carub.0003s2769' => 'cru', 'Carub.0004s1178' => 'cru', 'Carub.0006s0806' => 'cru', 'Carub.0006s0807' => 'cru', 'Carub.0006s0808' => 'cru', 'Carub.0008s0501' => 'cru', 'Carub.0008s2379' => 'cru', 'Ca_08655_v3' => 'car', 'Ca_08922_v3' => 'car', 'Ca_08923_v3' => 'car', 'Ca_09119_v3' => 'car', 'Ca_09703_v3' => 'car', 'Ca_09705_v3' => 'car', 'Ca_09835_v3' => 'car', 'Ca_26403_v3' => 'car', 'Ca_30719_v3' => 'car', 'CBR_g17958' => 'cbr', 'CBR_g40516' => 'cbr', 'Cc00_g05350' => 'ccan', 'Cc01_g18690' => 'ccan', 'Cc03_g04830' => 'ccan', 'Cc03_g04850' => 'ccan', 'CDE02G4469' => 'cde', 'CDE06G0883' => 'cde', 'CDE06G1295' => 'cde', 'CDE06G1390' => 'cde', 'CDE07G0584' => 'cde', 'CDE07G1084' => 'cde', 'CDE08G1259' => 'cde', 'Cfa002341' => 'cfa', 'Cfa024337' => 'cfa', 'Ciclev10004749m.g' => 'ccl', 'Ciclev10006127m.g' => 'ccl', 'Ciclev10019720m.g' => 'ccl', 'Ciclev10022652m.g' => 'ccl', 'CiPaw.01G190400' => 'cil', 'CiPaw.01G190500' => 'cil', 'CiPaw.02G116400' => 'cil', 'CiPaw.02G116500' => 'cil', 'CiPaw.04G183000' => 'cil', 'CiPaw.04G183300' => 'cil', 'ClCG05G004610' => 'cla', 'ClCG05G004620' => 'cla', 'ClCG06G006730' => 'cla', 'ClCG06G006740' => 'cla', 'ClCG11G003690' => 'cla', 'COL.COLO4_08276' => 'col', 'COL.COLO4_08277' => 'col', 'COL.COLO4_15787' => 'col', 'COL.COLO4_15789' => 'col', 'Cpa.g.c44815' => 'cpa', 'Cpa.g.sc52.144' => 'cpa', 'Cpa.g.sc58.46' => 'cpa', 'Cpa.g.sc58.47' => 'cpa', 'Cre08.g360900' => 'cre', 'CsaV3_2G013030' => 'csa', 'CsaV3_2G013050' => 'csa', 'CsaV3_2G015620' => 'csa', 'CsaV3_3G012590' => 'csa', 'CsaV3_3G012600' => 'csa', 'CSS0001641' => 'camsi', 'CSS0008310' => 'camsi', 'CSS0013011' => 'camsi', 'CSS0017147' => 'camsi', 'CSS0022970' => 'camsi', 'CSS0025655' => 'camsi', 'CSS0028665' => 'camsi', 'CSS0029117' => 'camsi', 'CSS0032024' => 'camsi', 'CSS0039681' => 'camsi', 'CSS0046516' => 'camsi', 'CSS0050307' => 'camsi', 'DCAR_005871' => 'dca', 'DCAR_007342' => 'dca', 'DCAR_024228' => 'dca', 'DCAR_027277' => 'dca', 'DCAR_030718' => 'dca', 'Dinv20287' => 'din', 'Dinv22461' => 'din', 'Dinv22464' => 'din', 'Dinv29912' => 'din', 'Dinv29913' => 'din', 'Dinv34580' => 'din', 'Dinv34582' => 'din', 'Dinv44632' => 'din', 'Duzib052G0266' => 'dzi', 'Duzib133G0907' => 'dzi', 'Duzib133G1034' => 'dzi', 'Duzib138G0207' => 'dzi', 'Duzib138G0491' => 'dzi', 'Duzib151G0812' => 'dzi', 'Duzib151G1166' => 'dzi', 'Duzib168G0192' => 'dzi', 'Duzib211G0077' => 'dzi', 'Duzib212G0429' => 'dzi', 'Duzib212G0472' => 'dzi', 'ECA233G2617' => 'eca', 'ECA236G4188' => 'eca', 'ECA240G0936' => 'eca', 'ECA240G1129' => 'eca', 'ECA247G0623' => 'eca', 'EL10Ac5g10451' => 'bvu', 'EL10Ac5g10453' => 'bvu', 'EL10Ac5g10894' => 'bvu', 'Eucgr.H00192' => 'egr', 'Eucgr.H00193' => 'egr', 'Eucgr.H00194' => 'egr', 'Eucgr.J01562' => 'egr', 'Eucgr.K03301' => 'egr', 'FAN02G0632' => 'fan', 'FAN05G5378' => 'fan', 'FAN09G3247' => 'fan', 'FAN12G0435' => 'fan', 'FAN12G2426' => 'fan', 'FAN14G1707' => 'fan', 'FAN14G4725' => 'fan', 'FAN15G2071' => 'fan', 'FAN17G3065' => 'fan', 'FAN19G1376' => 'fan', 'FAN20G0354' => 'fan', 'FAN20G2429' => 'fan', 'FAN20G2658' => 'fan', 'FAN24G2343' => 'fan', 'FAN27G2362' => 'fan', 'FAN28G1765' => 'fan', 'FvH4_1g16020' => 'fve', 'FvH4_2g04890' => 'fve', 'FvH4_2g22270' => 'fve', 'FvH4_4g02630' => 'fve', 'FvH4_4g02640' => 'fve', 'FvH4_6g02650' => 'fve', 'Glyma.02G140600' => 'gma', 'Glyma.03G159900' => 'gma', 'Glyma.05G234800' => 'gma', 'Glyma.07G269600' => 'gma', 'Glyma.08G042300' => 'gma', 'Glyma.10G033500' => 'gma', 'Glyma.10G185200' => 'gma', 'Glyma.17G004300' => 'gma', 'Glyma.19G161900' => 'gma', 'Glyma.20G205100' => 'gma', 'Glyma.20G205200' => 'gma', 'Gohir.A01G139101' => 'ghi', 'Gohir.A02G035600' => 'ghi', 'Gohir.A02G117901' => 'ghi', 'Gohir.A07G210100' => 'ghi', 'Gohir.A07G210200' => 'ghi', 'Gohir.A08G061100' => 'ghi', 'Gohir.A09G223000' => 'ghi', 'Gohir.A09G223100' => 'ghi', 'Gohir.A10G113900' => 'ghi', 'Gohir.A10G114000' => 'ghi', 'Gohir.D02G042300' => 'ghi', 'Gohir.D07G216100' => 'ghi', 'Gohir.D07G216200' => 'ghi', 'Gohir.D08G070400' => 'ghi', 'Gohir.D09G225000' => 'ghi', 'Gohir.D09G225100' => 'ghi', 'Gohir.D10G152300' => 'ghi', 'Gohir.D10G153200' => 'ghi', 'Gohir.D11G133701' => 'ghi', 'Gorai.004G074100' => 'gra', 'Gorai.005G046800' => 'gra', 'Gorai.006G246500' => 'gra', 'Gorai.006G246600' => 'gra', 'Gorai.007G142900' => 'gra', 'Gorai.011G171000' => 'gra', 'Gorai.011G171100' => 'gra', 'Gorai.013G104300' => 'gra', 'Gorai.013G104400' => 'gra', 'GSVIVG01000754001' => 'vvi', 'GSVIVG01000756001' => 'vvi', 'GSVIVG01010903001' => 'vvi', 'GSVIVG01017623001' => 'vvi', 'GSVIVG01018113001' => 'vvi', 'GSVIVG01018116001' => 'vvi', 'GSVIVG01018118001' => 'vvi', 'HanXRQChr03g0076211' => 'han', 'HanXRQChr03g0092431' => 'han', 'HanXRQChr03g0092441' => 'han', 'HanXRQChr03g0092591' => 'han', 'HanXRQChr03g0092671' => 'han', 'HanXRQChr03g0092681' => 'han', 'HanXRQChr03g0092691' => 'han', 'HanXRQChr03g0092701' => 'han', 'HanXRQChr03g0092721' => 'han', 'HanXRQChr03g0092731' => 'han', 'HanXRQChr04g0113681' => 'han', 'HanXRQChr10g0281371' => 'han', 'HanXRQChr11g0337141' => 'han', 'HanXRQChr13g0424521' => 'han', 'HanXRQChr13g0424531' => 'han', 'HanXRQChr13g0424541' => 'han', 'HanXRQChr16g0498221' => 'han', 'Haze_04377' => 'cav', 'Haze_11298' => 'cav', 'Haze_24547' => 'cav', 'Haze_24550' => 'cav', 'Haze_26587' => 'cav', 'Hma1.2p1_0650F.1_g195410' => 'hma', 'Hma1.2p1_0893F.1_g233470' => 'hma', 'HPP92_006508' => 'vpl', 'HPP92_024780' => 'vpl', 'Hund02688' => 'sun', 'Hund09380' => 'sun', 'Hund09381' => 'sun', 'Hund09832' => 'sun', 'Hund09833' => 'sun', 'Hund11351' => 'sun', 'Hund11513' => 'sun', 'Lalb_Chr06g0162591' => 'lal', 'Lalb_Chr06g0162601' => 'lal', 'Lalb_Chr06g0169321' => 'lal', 'Lalb_Chr09g0330951' => 'lal', 'Lalb_Chr16g0387631' => 'lal', 'Lalb_Chr21g0306241' => 'lal', 'Lalb_Chr25g0290051' => 'lal', 'Lalb_Chr25g0290061' => 'lal', 'Lalb_Chr25g0290071' => 'lal', 'Lj1g0003876' => 'lja', 'Lj1P1207T36' => 'lonja', 'Lj2C1156G12' => 'lonja', 'Lj3A793G39' => 'lonja', 'Lj3C580G2' => 'lonja', 'Lj3C780G2' => 'lonja', 'Lj3C780T4' => 'lonja', 'Lj3C793G9' => 'lonja', 'Lj4g0012960' => 'lja', 'Lj5g0021252' => 'lja', 'Lj5g0021484' => 'lja', 'Lj5g0024528' => 'lja', 'Lj6A399T12' => 'lonja', 'Lj6A656G65' => 'lonja', 'Lsat_1_v5_gn_3_125500' => 'lsa', 'Lsat_1_v5_gn_3_125540' => 'lsa', 'Lsat_1_v5_gn_5_72701' => 'lsa', 'Lsat_1_v5_gn_8_91560' => 'lsa', 'Lsat_1_v5_gn_9_9640' => 'lsa', 'Manes.01G200600' => 'mes', 'Manes.01G200700' => 'mes', 'Manes.03G168900' => 'mes', 'Manes.03G169000' => 'mes', 'Manes.05G085801' => 'mes', 'Manes.05G086200' => 'mes', 'Manes.15G036700' => 'mes', 'Manes.15G036900' => 'mes', 'Mapoly0004s0172' => 'mpo', 'Mapoly0023s0001' => 'mpo', 'Mapoly0142s0012' => 'mpo', 'MBI01_g32854_MAGBIO' => 'mbi', 'MBI11_g24427_MAGBIO' => 'mbi', 'MBI11_g47319_MAGBIO' => 'mbi', 'MCO01G433' => 'mco', 'MD00G1187800' => 'mdo', 'MD04G1226500' => 'mdo', 'MD05G1203900' => 'mdo', 'MD10G1191100' => 'mdo', 'MD12G1243500' => 'mdo', 'MD13G1207000' => 'mdo', 'MD13G1207100' => 'mdo', 'MD16G1208600' => 'mdo', 'Medtr1g050352' => 'mtr', 'Medtr1g070385' => 'mtr', 'Medtr1g070450' => 'mtr', 'Medtr1g075200' => 'mtr', 'Medtr1g075250' => 'mtr', 'Medtr1g075260' => 'mtr', 'Medtr1g475250' => 'mtr', 'Medtr4g075450' => 'mtr', 'Medtr7g096300' => 'mtr', 'Medtr8g105110' => 'mtr', 'MELO3C006470.2' => 'cme', 'MELO3C006471.2' => 'cme', 'MELO3C020772.2' => 'cme', 'MELO3C026780.2' => 'cme', 'MELO3C026781.2' => 'cme', 'Migut.D00390' => 'egut', 'Migut.G00435' => 'egut', 'Migut.G00436' => 'egut', 'Migut.G00718' => 'egut', 'MSTRG.21891' => 'ama', 'MSTRG.26910' => 'ama', 'MSTRG.4099' => 'ama', 'MSTRG.9925' => 'ama', 'Nitab4.5_0000165g0010' => 'nta', 'Nitab4.5_0000209g0180' => 'nta', 'Nitab4.5_0000244g0440' => 'nta', 'Nitab4.5_0000525g0220' => 'nta', 'Nitab4.5_0001597g0020' => 'nta', 'Nitab4.5_0001878g0040' => 'nta', 'Nitab4.5_0001878g0060' => 'nta', 'Nitab4.5_0002838g0100' => 'nta', 'Nitab4.5_0002838g0120' => 'nta', 'Nitab4.5_0004798g0030' => 'nta', 'Nitab4.5_0005420g0010' => 'nta', 'Nitab4.5_0005507g0010' => 'nta', 'Nitab4.5_0005574g0020' => 'nta', 'Nitab4.5_0005838g0010' => 'nta', 'Nitab4.5_0010580g0020' => 'nta', 'Nn1g02599' => 'nnu', 'Nn1g02608' => 'nnu', 'Nn3g17742' => 'nnu', 'Nn3g19534' => 'nnu', 'Nn3g19535' => 'nnu', 'Oeu008790.1' => 'oeu', 'Oeu008792.1' => 'oeu', 'Oeu032590.1' => 'oeu', 'Oeu035349.1' => 'oeu', 'Oeu049791.1' => 'oeu', 'Os01g0774500' => 'osa', 'Os03g0628800' => 'osa', 'Os03g0798600' => 'osa', 'Os05g0508800' => 'osa', 'Peaxi162Scf00036g02018' => 'pax', 'Peaxi162Scf00578g00032' => 'pax', 'Peaxi162Scf00578g00317' => 'pax', 'Peaxi162Scf00785g00114' => 'pax', 'Peaxi162Scf00813g00119' => 'pax', 'Peaxi162Scf00906g00227' => 'pax', 'PGR004G0875' => 'pgr', 'PGR004G2424' => 'pgr', 'PGR031G1239' => 'pgr', 'PGR031G2474' => 'pgr', 'PGR044G0423' => 'pgr', 'PGSC0003DMG400001128' => 'stu', 'PGSC0003DMG400007336' => 'stu', 'PGSC0003DMG400016318' => 'stu', 'PGSC0003DMG400016319' => 'stu', 'PGSC0003DMG400018074' => 'stu', 'Phvul.001G157700' => 'pvu', 'Phvul.002G148550' => 'pvu', 'Phvul.002G320200' => 'pvu', 'Phvul.003G089200' => 'pvu', 'Phvul.007G126000' => 'pvu', 'Phvul.007G126100' => 'pvu', 'Phvul.007G178000' => 'pvu', 'Phvul.007G178200' => 'pvu', 'Potri.002G043000' => 'ptr', 'Potri.002G043200' => 'ptr', 'Potri.003G123750' => 'ptr', 'Potri.005G055401' => 'ptr', 'Potri.005G219700' => 'ptr', 'Potri.005G220000' => 'ptr', 'Potri.008G161901' => 'ptr', 'Potri.008G162000' => 'ptr', 'Potri.008G162400' => 'ptr', 'Potri.010G076900' => 'ptr', 'Pp3c12_9180' => 'ppa', 'Pp3c13_19770' => 'ppa', 'Pp3c14_22950' => 'ppa', 'Pp3c16_12160' => 'ppa', 'Pp3c27_7820' => 'ppa', 'Pp3c2_3490' => 'ppa', 'Pp3c3_23700' => 'ppa', 'Pp3c3_36520' => 'ppa', 'Pp3c4_15250' => 'ppa', 'PRCOL_00007002' => 'pco', 'Prupe.1G030600' => 'ppe', 'Prupe.1G030700' => 'ppe', 'Prupe.6G345200' => 'ppe', 'Prupe.8G230300' => 'ppe', 'Prupe.8G230500' => 'ppe', 'Psat3g059600' => 'psa', 'Psat5g200920' => 'psa', 'Psat6g056440' => 'psa', 'Psat6g057360' => 'psa', 'Psat6g134120' => 'psa', 'Psat6g134160' => 'psa', 'Psat7g008640' => 'psa', 'Psat7g185240' => 'psa', 'PSO017G1330' => 'pso', 'PSO063G6097' => 'pso', 'PSO170G0835' => 'pso', 'PSO170G2499' => 'pso', 'PSO210G5058' => 'pso', 'PSO210G6154' => 'pso', 'PSO585G0031' => 'pso', 'PSO832G0264' => 'pso', 'PSO832G4288' => 'pso', 'QL03p027355' => 'qlo', 'QL03p027430' => 'qlo', 'QL04p081380' => 'qlo', 'QL06p015642' => 'qlo', 'QL06p015650' => 'qlo', 'QL06p015686' => 'qlo', 'QL12p042927' => 'qlo', 'QL93p1863_0035' => 'qlo', 'RcHm_v2.0_Chr3g0450581' => 'rch', 'RcHm_v2.0_Chr4g0390371' => 'rch', 'RcHm_v2.0_Chr4g0390381' => 'rch', 'RcHm_v2.0_Chr4g0390491' => 'rch', 'RcHm_v2.0_Chr4g0390501' => 'rch', 'RcHm_v2.0_Chr6g0289231' => 'rch', 'Rhsim04G0190400' => 'rsi', 'Rhsim04G0190500' => 'rsi', 'Rhsim04G0190600' => 'rsi', 'Rhsim13G0031400' => 'rsi', 'Rhsim13G0165600' => 'rsi', 'RhsimUnG0114600' => 'rsi', 'RhsimUnG0114700' => 'rsi', 'Sabra02G0034800' => 'sbr', 'Sabra02G0035100' => 'sbr', 'Sabra05G0168600' => 'sbr', 'Sabra05G0168800' => 'sbr', 'Sabra08G0123700' => 'sbr', 'Sabra10G0031900' => 'sbr', 'Sabra13G0039000' => 'sbr', 'SalBow2G0782' => 'sbo', 'SalBow2G1403' => 'sbo', 'SalBow4G0074' => 'sbo', 'SalBow4G2635' => 'sbo', 'SalBow5G3010' => 'sbo', 'Sc05g0000870' => 'sci', 'Sc05g0000890' => 'sci', 'Sc13g0005000' => 'sci', 'Sc13g0005030' => 'sci', 'Sc19g0003790' => 'sci', 'Sc19g0003800' => 'sci', 'Sed0003467' => 'sed', 'Sed0009355' => 'sed', 'Sed0009894' => 'sed', 'Sed0011972' => 'sed', 'Sed0021483' => 'sed', 'Sed0021750' => 'sed', 'Sed0026279' => 'sed', 'SEGI_05312' => 'sgi', 'SEGI_10112' => 'sgi', 'SEGI_15835' => 'sgi', 'SEGI_30386' => 'sgi', 'SEGI_34122' => 'sgi', 'SEGI_35063' => 'sgi', 'SGA_v2.0_scaffold101G29794' => 'sas', 'SGA_v2.0_scaffold1G00573' => 'sas', 'SGA_v2.0_scaffold79G25637' => 'sas', 'SGA_v2.0_scaffold88G27283' => 'sas', 'SGA_v2.0_scaffold88G27285' => 'sas', 'SGA_v2.0_scaffold88G27331' => 'sas', 'SHI09937' => 'shi', 'SMO119G0302' => 'smo', 'SMO137G0231' => 'smo', 'SMO367G1151' => 'smo', 'Solyc02g082000.3' => 'sly', 'Solyc06g031670.3' => 'sly', 'Solyc06g053810.3' => 'sly', 'Solyc07g025457.1' => 'sly', 'Solyc08g059740.1' => 'sly', 'Solyc08g059750.3' => 'sly', 'Solyc09g083370.3' => 'sly', 'Solyc12g038950.3' => 'sly', 'Sopen02g026630' => 'spe', 'Sopen06g018930' => 'spe', 'Sopen06g018940' => 'spe', 'Sopen08g009460' => 'spe', 'Sopen09g032290' => 'spe', 'Sp1g03080' => 'spa', 'Sp1g03090' => 'spa', 'Sp1g05480' => 'spa', 'Sp2g07860' => 'spa', 'Sp2g08430' => 'spa', 'Sp2g08440' => 'spa', 'Sp2g26200' => 'spa', 'Sp4g13170' => 'spa', 'Sp6g33840' => 'spa', 'SpUn1204_0010' => 'spa', 'TAR365G0908' => 'tar', 'TAR381G1270' => 'tar', 'TAR381G1651' => 'tar', 'TAR625G1131' => 'tar', 'TAR633G0962' => 'tar', 'TAR633G1729' => 'tar', 'TAR633G1864' => 'tar', 'TAR636G0221' => 'tar', 'TAR636G0314' => 'tar', 'TAR636G3202' => 'tar', 'THA.LOC104800805' => 'tha', 'THA.LOC104801096' => 'tha', 'THA.LOC104801555' => 'tha', 'THA.LOC104808491' => 'tha', 'THA.LOC104808595' => 'tha', 'THA.LOC104815985' => 'tha', 'THA.LOC104822250' => 'tha', 'THA.LOC104826071' => 'tha', 'Thecc.01G265200' => 'tca', 'Thecc.01G265300' => 'tca', 'Thecc.01G265700' => 'tca', 'Thecc.03G109100' => 'tca', 'Thecc.04G245900' => 'tca', 'Thecc.04G246000' => 'tca', 'Thhalv10003334m.g' => 'esa', 'Thhalv10005508m.g' => 'esa', 'Thhalv10005643m.g' => 'esa', 'Thhalv10007316m.g' => 'esa', 'Thhalv10009006m.g' => 'esa', 'Thhalv10009309m.g' => 'esa', 'Thhalv10014917m.g' => 'esa', 'Thhalv10014919m.g' => 'esa', 'Thhalv10015393m.g' => 'esa', 'Thhalv10016515m.g' => 'esa', 'Thhalv10029242m.g' => 'esa', 'TPR.G16654' => 'tpr', 'TPR.G20589' => 'tpr', 'TPR.G23029' => 'tpr', 'TPR.G27731' => 'tpr', 'TPR.G28889' => 'tpr', 'TPR.G28899' => 'tpr', 'TPR.G30846' => 'tpr', 'TPR.G5452' => 'tpr', 'TPR.G5713' => 'tpr', 'TPR.G9046' => 'tpr', 'TPR.G9061' => 'tpr', 'TWI09G1075' => 'twi', 'TWI12G0806' => 'twi', 'TWI18G0108' => 'twi', 'TWI53G1361' => 'twi', 'TWI73G0185' => 'twi', 'TWI73G0427' => 'twi', 'unitig_37.g12001' => 'ugi', 'unitig_747.g21660' => 'ugi', 'unitig_748.g7232' => 'ugi', 'unitig_748.g7315' => 'ugi', 'unitig_85.g27262' => 'ugi', 'unitig_92.g28220' => 'ugi', 'vmacro02632' => 'vma', 'vmacro08410' => 'vma', 'vmacro08411' => 'vma', 'vmacro15407' => 'vma', 'VMungo0251G3619' => 'vmu', 'VMungo0720G1204' => 'vmu', 'VMungo0720G1918' => 'vmu', 'VMungo0720G2387' => 'vmu', 'VMungo0720G2961' => 'vmu', 'VMungo1215G2154' => 'vmu', 'VMungo1383G2411' => 'vmu', 'Zm00001eb051130' => 'zma', 'Zm00001eb116830' => 'zma', 'Zm00001eb116850' => 'zma', 'Zm00001eb151740' => 'zma', 'Zm00001eb292360' => 'zma', 'Zm00001eb301640' => 'zma' ) $gf_id = 'HOM05D000856' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000856' ) $data_identifier = 'HOM05D000856' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 13, 'ath' => (int) 10, 'atr' => (int) 1, 'acertr' => (int) 8, 'cqu' => (int) 6, 'bca' => (int) 21, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 11, 'car' => (int) 9, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 8, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 5, 'fan' => (int) 16, 'fve' => (int) 6, 'gma' => (int) 11, 'ghi' => (int) 19, 'gra' => (int) 9, 'vvi' => (int) 7, 'han' => (int) 17, 'cav' => (int) 5, 'hma' => (int) 2, 'vpl' => (int) 2, 'sun' => (int) 7, 'lal' => (int) 9, 'lja' => (int) 5, 'lonja' => (int) 9, 'lsa' => (int) 5, 'mes' => (int) 8, 'mpo' => (int) 3, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 10, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 15, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 9, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 9, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 6, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 5, 'spa' => (int) 10, 'tar' => (int) 10, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 11, 'tpr' => (int) 11, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 4, 'vmu' => (int) 7, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb301640' $species_info = array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ) $local_species = 'ppe' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000856', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p00010' => 'bna', 'A03p04160' => 'bna', 'A03p17160' => 'bna', 'A04p23370' => 'bna', 'A05p14860' => 'bna', 'A08p37020' => 'bna', 'A09p08050' => 'bna', 'A09p66800' => 'bna', 'A09p67940' => 'bna', 'A10p02680' => 'bna', 'A10p05320' => 'bna', 'Aa31LG1G20560' => 'aar', 'Aa31LG1G20610' => 'aar', 'Aa31LG1G7810' => 'aar', 'Aa31LG5G3590' => 'aar', 'Aa31LG5G6140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3819' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4683' => 'aag', 'Actinidia04480' => 'ach', 'Actinidia05466' => 'ach', 'Actinidia08445' => 'ach', 'Actinidia21170' => 'ach', 'Actinidia24812' => 'ach', 'Actinidia24951' => 'ach', 'Actinidia40088' => 'ach', 'Ah.02g111660' => 'amhyb', 'Ah.11g048900' => 'amhyb', 'Ah.11g049910' => 'amhyb', 'AL1G13870' => 'aly', 'AL1G13880' => 'aly', 'AL1G16760' => 'aly', 'AL390U10020' => 'aly', 'AL4G25520' => 'aly', 'AL6G19890' => 'aly', 'AL6G19900' => 'aly', 'AL6G19910' => 'aly', 'AL8G40100' => 'aly', 'Aqoxy2G03562' => 'aox', 'Aqoxy5G00316' => 'aox', 'Aqoxy5G00926' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1628KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1H403S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2FU6SJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.882I6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8YRY2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YN1SN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AF70II' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZA8L1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F916KL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHRD8H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KTZ8QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S22EMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8M29T' => 'arhy', 'AT1G04270' => 'ath', 'AT1G04280' => 'ath', 'AT1G06750' => 'ath', 'AT1G33850' => 'ath', 'AT2G30630' => 'ath', 'AT5G09490' => 'ath', 'AT5G09500' => 'ath', 'AT5G09510' => 'ath', 'AT5G43640' => 'ath', 'AT5G63070' => 'ath', 'ATR0605G315' => 'atr', 'Atru.chr11.175' => 'acertr', 'Atru.chr11.653' => 'acertr', 'Atru.chr3.1616' => 'acertr', 'Atru.chr4.2230' => 'acertr', 'Atru.chr4.2232' => 'acertr', 'Atru.chr5.1598' => 'acertr', 'Atru.chr5.1600' => 'acertr', 'Atru.chr5.2188' => 'acertr', 'AUR62008326' => 'cqu', 'AUR62011922' => 'cqu', 'AUR62011924' => 'cqu', 'AUR62021771' => 'cqu', 'AUR62032237' => 'cqu', 'AUR62032240' => 'cqu', 'BcaB01g05572' => 'bca', 'BcaB02g10337' => 'bca', 'BcaB04g19944' => 'bca', 'BcaB05g21548' => 'bca', 'BcaB05g21549' => 'bca', 'BcaB05g23227' => 'bca', 'BcaB06g26256' => 'bca', 'BcaB06g26257' => 'bca', 'BcaB06g28379' => 'bca', 'BcaC02g11159' => 'bca', 'BcaC03g13258' => 'bca', 'BcaC03g13259' => 'bca', 'BcaC05g24456' => 'bca', 'BcaC05g24457' => 'bca', 'BcaC07g36922' => 'bca', 'BcaC07g36923' => 'bca', 'BcaC07g42050' => 'bca', 'BcaC07g42176' => 'bca', 'BcaC07g42195' => 'bca', 'BcaC07g42196' => 'bca', 'BcaNung06674' => 'bca', 'BolC2t06351H' => 'bol', 'BolC2t06352H' => 'bol', 'BolC3t12993H' => 'bol', 'BolC4t23525H' => 'bol', 'BolC4t27475H' => 'bol', 'BolC5t29025H' => 'bol', 'BolC5t29026H' => 'bol', 'BolC8t46898H' => 'bol', 'BolC8t46899H' => 'bol', 'BolC8t52630H' => 'bol', 'BolC8t52765H' => 'bol', 'BolC9t53824H' => 'bol', 'BraA03t09760Z' => 'bra', 'BraA03t10990Z' => 'bra', 'BraA05t20413Z' => 'bra', 'BraA08t35602Z' => 'bra', 'BraA09t36458Z' => 'bra', 'BraA09t42018Z' => 'bra', 'BraA09t42129Z' => 'bra', 'BraA10t42536Z' => 'bra', 'BraA10t42537Z' => 'bra', 'C01p10690' => 'bna', 'C02p03890' => 'bna', 'C02p03900' => 'bna', 'C03p04620' => 'bna', 'C04p19870' => 'bna', 'C04p59670' => 'bna', 'C05p02460' => 'bna', 'C05p02470' => 'bna', 'C08p00980' => 'bna', 'C08p00990' => 'bna', 'C08p51030' => 'bna', 'C08p52360' => 'bna', 'C09p09120' => 'bna', 'CAN.G19.15' => 'can', 'CAN.G251.10' => 'can', 'CAN.G251.9' => 'can', 'CAN.G398.24' => 'can', 'CAN.G410.32' => 'can', 'CAN.G881.2' => 'can', 'CANSAT01G3025' => 'cansat', 'CANSAT78G1211' => 'cansat', 'CANSAT78G1218' => 'cansat', 'CANSAT78G1521' => 'cansat', 'CANSAT78G1670' => 'cansat', 'CARHR003600' => 'chi', 'CARHR003610' => 'chi', 'CARHR006290' => 'chi', 'CARHR006430' => 'chi', 'CARHR124110' => 'chi', 'CARHR203870' => 'chi', 'CARHR203880' => 'chi', 'CARHR203890' => 'chi', 'CARHR276880' => 'chi', 'Carub.0001s0346' => 'cru', 'Carub.0001s0347' => 'cru', 'Carub.0001s0607' => 'cru', 'Carub.0003s2768' => 'cru', 'Carub.0003s2769' => 'cru', 'Carub.0004s1178' => 'cru', 'Carub.0006s0806' => 'cru', 'Carub.0006s0807' => 'cru', 'Carub.0006s0808' => 'cru', 'Carub.0008s0501' => 'cru', 'Carub.0008s2379' => 'cru', 'Ca_08655_v3' => 'car', 'Ca_08922_v3' => 'car', 'Ca_08923_v3' => 'car', 'Ca_09119_v3' => 'car', 'Ca_09703_v3' => 'car', 'Ca_09705_v3' => 'car', 'Ca_09835_v3' => 'car', 'Ca_26403_v3' => 'car', 'Ca_30719_v3' => 'car', 'CBR_g17958' => 'cbr', 'CBR_g40516' => 'cbr', 'Cc00_g05350' => 'ccan', 'Cc01_g18690' => 'ccan', 'Cc03_g04830' => 'ccan', 'Cc03_g04850' => 'ccan', 'CDE02G4469' => 'cde', 'CDE06G0883' => 'cde', 'CDE06G1295' => 'cde', 'CDE06G1390' => 'cde', 'CDE07G0584' => 'cde', 'CDE07G1084' => 'cde', 'CDE08G1259' => 'cde', 'Cfa002341' => 'cfa', 'Cfa024337' => 'cfa', 'Ciclev10004749m.g' => 'ccl', 'Ciclev10006127m.g' => 'ccl', 'Ciclev10019720m.g' => 'ccl', 'Ciclev10022652m.g' => 'ccl', 'CiPaw.01G190400' => 'cil', 'CiPaw.01G190500' => 'cil', 'CiPaw.02G116400' => 'cil', 'CiPaw.02G116500' => 'cil', 'CiPaw.04G183000' => 'cil', 'CiPaw.04G183300' => 'cil', 'ClCG05G004610' => 'cla', 'ClCG05G004620' => 'cla', 'ClCG06G006730' => 'cla', 'ClCG06G006740' => 'cla', 'ClCG11G003690' => 'cla', 'COL.COLO4_08276' => 'col', 'COL.COLO4_08277' => 'col', 'COL.COLO4_15787' => 'col', 'COL.COLO4_15789' => 'col', 'Cpa.g.c44815' => 'cpa', 'Cpa.g.sc52.144' => 'cpa', 'Cpa.g.sc58.46' => 'cpa', 'Cpa.g.sc58.47' => 'cpa', 'Cre08.g360900' => 'cre', 'CsaV3_2G013030' => 'csa', 'CsaV3_2G013050' => 'csa', 'CsaV3_2G015620' => 'csa', 'CsaV3_3G012590' => 'csa', 'CsaV3_3G012600' => 'csa', 'CSS0001641' => 'camsi', 'CSS0008310' => 'camsi', 'CSS0013011' => 'camsi', 'CSS0017147' => 'camsi', 'CSS0022970' => 'camsi', 'CSS0025655' => 'camsi', 'CSS0028665' => 'camsi', 'CSS0029117' => 'camsi', 'CSS0032024' => 'camsi', 'CSS0039681' => 'camsi', 'CSS0046516' => 'camsi', 'CSS0050307' => 'camsi', 'DCAR_005871' => 'dca', 'DCAR_007342' => 'dca', 'DCAR_024228' => 'dca', 'DCAR_027277' => 'dca', 'DCAR_030718' => 'dca', 'Dinv20287' => 'din', 'Dinv22461' => 'din', 'Dinv22464' => 'din', 'Dinv29912' => 'din', 'Dinv29913' => 'din', 'Dinv34580' => 'din', 'Dinv34582' => 'din', 'Dinv44632' => 'din', 'Duzib052G0266' => 'dzi', 'Duzib133G0907' => 'dzi', 'Duzib133G1034' => 'dzi', 'Duzib138G0207' => 'dzi', 'Duzib138G0491' => 'dzi', 'Duzib151G0812' => 'dzi', 'Duzib151G1166' => 'dzi', 'Duzib168G0192' => 'dzi', 'Duzib211G0077' => 'dzi', 'Duzib212G0429' => 'dzi', 'Duzib212G0472' => 'dzi', 'ECA233G2617' => 'eca', 'ECA236G4188' => 'eca', 'ECA240G0936' => 'eca', 'ECA240G1129' => 'eca', 'ECA247G0623' => 'eca', 'EL10Ac5g10451' => 'bvu', 'EL10Ac5g10453' => 'bvu', 'EL10Ac5g10894' => 'bvu', 'Eucgr.H00192' => 'egr', 'Eucgr.H00193' => 'egr', 'Eucgr.H00194' => 'egr', 'Eucgr.J01562' => 'egr', 'Eucgr.K03301' => 'egr', 'FAN02G0632' => 'fan', 'FAN05G5378' => 'fan', 'FAN09G3247' => 'fan', 'FAN12G0435' => 'fan', 'FAN12G2426' => 'fan', 'FAN14G1707' => 'fan', 'FAN14G4725' => 'fan', 'FAN15G2071' => 'fan', 'FAN17G3065' => 'fan', 'FAN19G1376' => 'fan', 'FAN20G0354' => 'fan', 'FAN20G2429' => 'fan', 'FAN20G2658' => 'fan', 'FAN24G2343' => 'fan', 'FAN27G2362' => 'fan', 'FAN28G1765' => 'fan', 'FvH4_1g16020' => 'fve', 'FvH4_2g04890' => 'fve', 'FvH4_2g22270' => 'fve', 'FvH4_4g02630' => 'fve', 'FvH4_4g02640' => 'fve', 'FvH4_6g02650' => 'fve', 'Glyma.02G140600' => 'gma', 'Glyma.03G159900' => 'gma', 'Glyma.05G234800' => 'gma', 'Glyma.07G269600' => 'gma', 'Glyma.08G042300' => 'gma', 'Glyma.10G033500' => 'gma', 'Glyma.10G185200' => 'gma', 'Glyma.17G004300' => 'gma', 'Glyma.19G161900' => 'gma', 'Glyma.20G205100' => 'gma', 'Glyma.20G205200' => 'gma', 'Gohir.A01G139101' => 'ghi', 'Gohir.A02G035600' => 'ghi', 'Gohir.A02G117901' => 'ghi', 'Gohir.A07G210100' => 'ghi', 'Gohir.A07G210200' => 'ghi', 'Gohir.A08G061100' => 'ghi', 'Gohir.A09G223000' => 'ghi', 'Gohir.A09G223100' => 'ghi', 'Gohir.A10G113900' => 'ghi', 'Gohir.A10G114000' => 'ghi', 'Gohir.D02G042300' => 'ghi', 'Gohir.D07G216100' => 'ghi', 'Gohir.D07G216200' => 'ghi', 'Gohir.D08G070400' => 'ghi', 'Gohir.D09G225000' => 'ghi', 'Gohir.D09G225100' => 'ghi', 'Gohir.D10G152300' => 'ghi', 'Gohir.D10G153200' => 'ghi', 'Gohir.D11G133701' => 'ghi', 'Gorai.004G074100' => 'gra', 'Gorai.005G046800' => 'gra', 'Gorai.006G246500' => 'gra', 'Gorai.006G246600' => 'gra', 'Gorai.007G142900' => 'gra', 'Gorai.011G171000' => 'gra', 'Gorai.011G171100' => 'gra', 'Gorai.013G104300' => 'gra', 'Gorai.013G104400' => 'gra', 'GSVIVG01000754001' => 'vvi', 'GSVIVG01000756001' => 'vvi', 'GSVIVG01010903001' => 'vvi', 'GSVIVG01017623001' => 'vvi', 'GSVIVG01018113001' => 'vvi', 'GSVIVG01018116001' => 'vvi', 'GSVIVG01018118001' => 'vvi', 'HanXRQChr03g0076211' => 'han', 'HanXRQChr03g0092431' => 'han', 'HanXRQChr03g0092441' => 'han', 'HanXRQChr03g0092591' => 'han', 'HanXRQChr03g0092671' => 'han', 'HanXRQChr03g0092681' => 'han', 'HanXRQChr03g0092691' => 'han', 'HanXRQChr03g0092701' => 'han', 'HanXRQChr03g0092721' => 'han', 'HanXRQChr03g0092731' => 'han', 'HanXRQChr04g0113681' => 'han', 'HanXRQChr10g0281371' => 'han', 'HanXRQChr11g0337141' => 'han', 'HanXRQChr13g0424521' => 'han', 'HanXRQChr13g0424531' => 'han', 'HanXRQChr13g0424541' => 'han', 'HanXRQChr16g0498221' => 'han', 'Haze_04377' => 'cav', 'Haze_11298' => 'cav', 'Haze_24547' => 'cav', 'Haze_24550' => 'cav', 'Haze_26587' => 'cav', 'Hma1.2p1_0650F.1_g195410' => 'hma', 'Hma1.2p1_0893F.1_g233470' => 'hma', 'HPP92_006508' => 'vpl', 'HPP92_024780' => 'vpl', 'Hund02688' => 'sun', 'Hund09380' => 'sun', 'Hund09381' => 'sun', 'Hund09832' => 'sun', 'Hund09833' => 'sun', 'Hund11351' => 'sun', 'Hund11513' => 'sun', 'Lalb_Chr06g0162591' => 'lal', 'Lalb_Chr06g0162601' => 'lal', 'Lalb_Chr06g0169321' => 'lal', 'Lalb_Chr09g0330951' => 'lal', 'Lalb_Chr16g0387631' => 'lal', 'Lalb_Chr21g0306241' => 'lal', 'Lalb_Chr25g0290051' => 'lal', 'Lalb_Chr25g0290061' => 'lal', 'Lalb_Chr25g0290071' => 'lal', 'Lj1g0003876' => 'lja', 'Lj1P1207T36' => 'lonja', 'Lj2C1156G12' => 'lonja', 'Lj3A793G39' => 'lonja', 'Lj3C580G2' => 'lonja', 'Lj3C780G2' => 'lonja', 'Lj3C780T4' => 'lonja', 'Lj3C793G9' => 'lonja', 'Lj4g0012960' => 'lja', 'Lj5g0021252' => 'lja', 'Lj5g0021484' => 'lja', 'Lj5g0024528' => 'lja', 'Lj6A399T12' => 'lonja', 'Lj6A656G65' => 'lonja', 'Lsat_1_v5_gn_3_125500' => 'lsa', 'Lsat_1_v5_gn_3_125540' => 'lsa', 'Lsat_1_v5_gn_5_72701' => 'lsa', 'Lsat_1_v5_gn_8_91560' => 'lsa', 'Lsat_1_v5_gn_9_9640' => 'lsa', 'Manes.01G200600' => 'mes', 'Manes.01G200700' => 'mes', 'Manes.03G168900' => 'mes', 'Manes.03G169000' => 'mes', 'Manes.05G085801' => 'mes', 'Manes.05G086200' => 'mes', 'Manes.15G036700' => 'mes', 'Manes.15G036900' => 'mes', 'Mapoly0004s0172' => 'mpo', 'Mapoly0023s0001' => 'mpo', 'Mapoly0142s0012' => 'mpo', 'MBI01_g32854_MAGBIO' => 'mbi', 'MBI11_g24427_MAGBIO' => 'mbi', 'MBI11_g47319_MAGBIO' => 'mbi', 'MCO01G433' => 'mco', 'MD00G1187800' => 'mdo', 'MD04G1226500' => 'mdo', 'MD05G1203900' => 'mdo', 'MD10G1191100' => 'mdo', 'MD12G1243500' => 'mdo', 'MD13G1207000' => 'mdo', 'MD13G1207100' => 'mdo', 'MD16G1208600' => 'mdo', 'Medtr1g050352' => 'mtr', 'Medtr1g070385' => 'mtr', 'Medtr1g070450' => 'mtr', 'Medtr1g075200' => 'mtr', 'Medtr1g075250' => 'mtr', 'Medtr1g075260' => 'mtr', 'Medtr1g475250' => 'mtr', 'Medtr4g075450' => 'mtr', 'Medtr7g096300' => 'mtr', 'Medtr8g105110' => 'mtr', 'MELO3C006470.2' => 'cme', 'MELO3C006471.2' => 'cme', 'MELO3C020772.2' => 'cme', 'MELO3C026780.2' => 'cme', 'MELO3C026781.2' => 'cme', 'Migut.D00390' => 'egut', 'Migut.G00435' => 'egut', 'Migut.G00436' => 'egut', 'Migut.G00718' => 'egut', 'MSTRG.21891' => 'ama', 'MSTRG.26910' => 'ama', 'MSTRG.4099' => 'ama', 'MSTRG.9925' => 'ama', 'Nitab4.5_0000165g0010' => 'nta', 'Nitab4.5_0000209g0180' => 'nta', 'Nitab4.5_0000244g0440' => 'nta', 'Nitab4.5_0000525g0220' => 'nta', 'Nitab4.5_0001597g0020' => 'nta', 'Nitab4.5_0001878g0040' => 'nta', 'Nitab4.5_0001878g0060' => 'nta', 'Nitab4.5_0002838g0100' => 'nta', 'Nitab4.5_0002838g0120' => 'nta', 'Nitab4.5_0004798g0030' => 'nta', 'Nitab4.5_0005420g0010' => 'nta', 'Nitab4.5_0005507g0010' => 'nta', 'Nitab4.5_0005574g0020' => 'nta', 'Nitab4.5_0005838g0010' => 'nta', 'Nitab4.5_0010580g0020' => 'nta', 'Nn1g02599' => 'nnu', 'Nn1g02608' => 'nnu', 'Nn3g17742' => 'nnu', 'Nn3g19534' => 'nnu', 'Nn3g19535' => 'nnu', 'Oeu008790.1' => 'oeu', 'Oeu008792.1' => 'oeu', 'Oeu032590.1' => 'oeu', 'Oeu035349.1' => 'oeu', 'Oeu049791.1' => 'oeu', 'Os01g0774500' => 'osa', 'Os03g0628800' => 'osa', 'Os03g0798600' => 'osa', 'Os05g0508800' => 'osa', 'Peaxi162Scf00036g02018' => 'pax', 'Peaxi162Scf00578g00032' => 'pax', 'Peaxi162Scf00578g00317' => 'pax', 'Peaxi162Scf00785g00114' => 'pax', 'Peaxi162Scf00813g00119' => 'pax', 'Peaxi162Scf00906g00227' => 'pax', 'PGR004G0875' => 'pgr', 'PGR004G2424' => 'pgr', 'PGR031G1239' => 'pgr', 'PGR031G2474' => 'pgr', 'PGR044G0423' => 'pgr', 'PGSC0003DMG400001128' => 'stu', 'PGSC0003DMG400007336' => 'stu', 'PGSC0003DMG400016318' => 'stu', 'PGSC0003DMG400016319' => 'stu', 'PGSC0003DMG400018074' => 'stu', 'Phvul.001G157700' => 'pvu', 'Phvul.002G148550' => 'pvu', 'Phvul.002G320200' => 'pvu', 'Phvul.003G089200' => 'pvu', 'Phvul.007G126000' => 'pvu', 'Phvul.007G126100' => 'pvu', 'Phvul.007G178000' => 'pvu', 'Phvul.007G178200' => 'pvu', 'Potri.002G043000' => 'ptr', 'Potri.002G043200' => 'ptr', 'Potri.003G123750' => 'ptr', 'Potri.005G055401' => 'ptr', 'Potri.005G219700' => 'ptr', 'Potri.005G220000' => 'ptr', 'Potri.008G161901' => 'ptr', 'Potri.008G162000' => 'ptr', 'Potri.008G162400' => 'ptr', 'Potri.010G076900' => 'ptr', 'Pp3c12_9180' => 'ppa', 'Pp3c13_19770' => 'ppa', 'Pp3c14_22950' => 'ppa', 'Pp3c16_12160' => 'ppa', 'Pp3c27_7820' => 'ppa', 'Pp3c2_3490' => 'ppa', 'Pp3c3_23700' => 'ppa', 'Pp3c3_36520' => 'ppa', 'Pp3c4_15250' => 'ppa', 'PRCOL_00007002' => 'pco', 'Prupe.1G030600' => 'ppe', 'Prupe.1G030700' => 'ppe', 'Prupe.6G345200' => 'ppe', 'Prupe.8G230300' => 'ppe', 'Prupe.8G230500' => 'ppe', 'Psat3g059600' => 'psa', 'Psat5g200920' => 'psa', 'Psat6g056440' => 'psa', 'Psat6g057360' => 'psa', 'Psat6g134120' => 'psa', 'Psat6g134160' => 'psa', 'Psat7g008640' => 'psa', 'Psat7g185240' => 'psa', 'PSO017G1330' => 'pso', 'PSO063G6097' => 'pso', 'PSO170G0835' => 'pso', 'PSO170G2499' => 'pso', 'PSO210G5058' => 'pso', 'PSO210G6154' => 'pso', 'PSO585G0031' => 'pso', 'PSO832G0264' => 'pso', 'PSO832G4288' => 'pso', 'QL03p027355' => 'qlo', 'QL03p027430' => 'qlo', 'QL04p081380' => 'qlo', 'QL06p015642' => 'qlo', 'QL06p015650' => 'qlo', 'QL06p015686' => 'qlo', 'QL12p042927' => 'qlo', 'QL93p1863_0035' => 'qlo', 'RcHm_v2.0_Chr3g0450581' => 'rch', 'RcHm_v2.0_Chr4g0390371' => 'rch', 'RcHm_v2.0_Chr4g0390381' => 'rch', 'RcHm_v2.0_Chr4g0390491' => 'rch', 'RcHm_v2.0_Chr4g0390501' => 'rch', 'RcHm_v2.0_Chr6g0289231' => 'rch', 'Rhsim04G0190400' => 'rsi', 'Rhsim04G0190500' => 'rsi', 'Rhsim04G0190600' => 'rsi', 'Rhsim13G0031400' => 'rsi', 'Rhsim13G0165600' => 'rsi', 'RhsimUnG0114600' => 'rsi', 'RhsimUnG0114700' => 'rsi', 'Sabra02G0034800' => 'sbr', 'Sabra02G0035100' => 'sbr', 'Sabra05G0168600' => 'sbr', 'Sabra05G0168800' => 'sbr', 'Sabra08G0123700' => 'sbr', 'Sabra10G0031900' => 'sbr', 'Sabra13G0039000' => 'sbr', 'SalBow2G0782' => 'sbo', 'SalBow2G1403' => 'sbo', 'SalBow4G0074' => 'sbo', 'SalBow4G2635' => 'sbo', 'SalBow5G3010' => 'sbo', 'Sc05g0000870' => 'sci', 'Sc05g0000890' => 'sci', 'Sc13g0005000' => 'sci', 'Sc13g0005030' => 'sci', 'Sc19g0003790' => 'sci', 'Sc19g0003800' => 'sci', 'Sed0003467' => 'sed', 'Sed0009355' => 'sed', 'Sed0009894' => 'sed', 'Sed0011972' => 'sed', 'Sed0021483' => 'sed', 'Sed0021750' => 'sed', 'Sed0026279' => 'sed', 'SEGI_05312' => 'sgi', 'SEGI_10112' => 'sgi', 'SEGI_15835' => 'sgi', 'SEGI_30386' => 'sgi', 'SEGI_34122' => 'sgi', 'SEGI_35063' => 'sgi', 'SGA_v2.0_scaffold101G29794' => 'sas', 'SGA_v2.0_scaffold1G00573' => 'sas', 'SGA_v2.0_scaffold79G25637' => 'sas', 'SGA_v2.0_scaffold88G27283' => 'sas', 'SGA_v2.0_scaffold88G27285' => 'sas', 'SGA_v2.0_scaffold88G27331' => 'sas', 'SHI09937' => 'shi', 'SMO119G0302' => 'smo', 'SMO137G0231' => 'smo', 'SMO367G1151' => 'smo', 'Solyc02g082000.3' => 'sly', 'Solyc06g031670.3' => 'sly', 'Solyc06g053810.3' => 'sly', 'Solyc07g025457.1' => 'sly', 'Solyc08g059740.1' => 'sly', 'Solyc08g059750.3' => 'sly', 'Solyc09g083370.3' => 'sly', 'Solyc12g038950.3' => 'sly', 'Sopen02g026630' => 'spe', 'Sopen06g018930' => 'spe', 'Sopen06g018940' => 'spe', 'Sopen08g009460' => 'spe', 'Sopen09g032290' => 'spe', 'Sp1g03080' => 'spa', 'Sp1g03090' => 'spa', 'Sp1g05480' => 'spa', 'Sp2g07860' => 'spa', 'Sp2g08430' => 'spa', 'Sp2g08440' => 'spa', 'Sp2g26200' => 'spa', 'Sp4g13170' => 'spa', 'Sp6g33840' => 'spa', 'SpUn1204_0010' => 'spa', 'TAR365G0908' => 'tar', 'TAR381G1270' => 'tar', 'TAR381G1651' => 'tar', 'TAR625G1131' => 'tar', 'TAR633G0962' => 'tar', 'TAR633G1729' => 'tar', 'TAR633G1864' => 'tar', 'TAR636G0221' => 'tar', 'TAR636G0314' => 'tar', 'TAR636G3202' => 'tar', 'THA.LOC104800805' => 'tha', 'THA.LOC104801096' => 'tha', 'THA.LOC104801555' => 'tha', 'THA.LOC104808491' => 'tha', 'THA.LOC104808595' => 'tha', 'THA.LOC104815985' => 'tha', 'THA.LOC104822250' => 'tha', 'THA.LOC104826071' => 'tha', 'Thecc.01G265200' => 'tca', 'Thecc.01G265300' => 'tca', 'Thecc.01G265700' => 'tca', 'Thecc.03G109100' => 'tca', 'Thecc.04G245900' => 'tca', 'Thecc.04G246000' => 'tca', 'Thhalv10003334m.g' => 'esa', 'Thhalv10005508m.g' => 'esa', 'Thhalv10005643m.g' => 'esa', 'Thhalv10007316m.g' => 'esa', 'Thhalv10009006m.g' => 'esa', 'Thhalv10009309m.g' => 'esa', 'Thhalv10014917m.g' => 'esa', 'Thhalv10014919m.g' => 'esa', 'Thhalv10015393m.g' => 'esa', 'Thhalv10016515m.g' => 'esa', 'Thhalv10029242m.g' => 'esa', 'TPR.G16654' => 'tpr', 'TPR.G20589' => 'tpr', 'TPR.G23029' => 'tpr', 'TPR.G27731' => 'tpr', 'TPR.G28889' => 'tpr', 'TPR.G28899' => 'tpr', 'TPR.G30846' => 'tpr', 'TPR.G5452' => 'tpr', 'TPR.G5713' => 'tpr', 'TPR.G9046' => 'tpr', 'TPR.G9061' => 'tpr', 'TWI09G1075' => 'twi', 'TWI12G0806' => 'twi', 'TWI18G0108' => 'twi', 'TWI53G1361' => 'twi', 'TWI73G0185' => 'twi', 'TWI73G0427' => 'twi', 'unitig_37.g12001' => 'ugi', 'unitig_747.g21660' => 'ugi', 'unitig_748.g7232' => 'ugi', 'unitig_748.g7315' => 'ugi', 'unitig_85.g27262' => 'ugi', 'unitig_92.g28220' => 'ugi', 'vmacro02632' => 'vma', 'vmacro08410' => 'vma', 'vmacro08411' => 'vma', 'vmacro15407' => 'vma', 'VMungo0251G3619' => 'vmu', 'VMungo0720G1204' => 'vmu', 'VMungo0720G1918' => 'vmu', 'VMungo0720G2387' => 'vmu', 'VMungo0720G2961' => 'vmu', 'VMungo1215G2154' => 'vmu', 'VMungo1383G2411' => 'vmu', 'Zm00001eb051130' => 'zma', 'Zm00001eb116830' => 'zma', 'Zm00001eb116850' => 'zma', 'Zm00001eb151740' => 'zma', 'Zm00001eb292360' => 'zma', 'Zm00001eb301640' => 'zma' ), 'gf_id' => 'HOM05D000856', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000856' ), 'data_identifier' => 'HOM05D000856', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000856', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p00010' => 'bna', 'A03p04160' => 'bna', 'A03p17160' => 'bna', 'A04p23370' => 'bna', 'A05p14860' => 'bna', 'A08p37020' => 'bna', 'A09p08050' => 'bna', 'A09p66800' => 'bna', 'A09p67940' => 'bna', 'A10p02680' => 'bna', 'A10p05320' => 'bna', 'Aa31LG1G20560' => 'aar', 'Aa31LG1G20610' => 'aar', 'Aa31LG1G7810' => 'aar', 'Aa31LG5G3590' => 'aar', 'Aa31LG5G6140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3819' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4683' => 'aag', 'Actinidia04480' => 'ach', 'Actinidia05466' => 'ach', 'Actinidia08445' => 'ach', 'Actinidia21170' => 'ach', 'Actinidia24812' => 'ach', 'Actinidia24951' => 'ach', 'Actinidia40088' => 'ach', 'Ah.02g111660' => 'amhyb', 'Ah.11g048900' => 'amhyb', 'Ah.11g049910' => 'amhyb', 'AL1G13870' => 'aly', 'AL1G13880' => 'aly', 'AL1G16760' => 'aly', 'AL390U10020' => 'aly', 'AL4G25520' => 'aly', 'AL6G19890' => 'aly', 'AL6G19900' => 'aly', 'AL6G19910' => 'aly', 'AL8G40100' => 'aly', 'Aqoxy2G03562' => 'aox', 'Aqoxy5G00316' => 'aox', 'Aqoxy5G00926' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1628KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1H403S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2FU6SJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.882I6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8YRY2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YN1SN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AF70II' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZA8L1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F916KL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHRD8H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KTZ8QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S22EMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8M29T' => 'arhy', 'AT1G04270' => 'ath', 'AT1G04280' => 'ath', 'AT1G06750' => 'ath', 'AT1G33850' => 'ath', 'AT2G30630' => 'ath', 'AT5G09490' => 'ath', 'AT5G09500' => 'ath', 'AT5G09510' => 'ath', 'AT5G43640' => 'ath', 'AT5G63070' => 'ath', 'ATR0605G315' => 'atr', 'Atru.chr11.175' => 'acertr', 'Atru.chr11.653' => 'acertr', 'Atru.chr3.1616' => 'acertr', 'Atru.chr4.2230' => 'acertr', 'Atru.chr4.2232' => 'acertr', 'Atru.chr5.1598' => 'acertr', 'Atru.chr5.1600' => 'acertr', 'Atru.chr5.2188' => 'acertr', 'AUR62008326' => 'cqu', 'AUR62011922' => 'cqu', 'AUR62011924' => 'cqu', 'AUR62021771' => 'cqu', 'AUR62032237' => 'cqu', 'AUR62032240' => 'cqu', 'BcaB01g05572' => 'bca', 'BcaB02g10337' => 'bca', 'BcaB04g19944' => 'bca', 'BcaB05g21548' => 'bca', 'BcaB05g21549' => 'bca', 'BcaB05g23227' => 'bca', 'BcaB06g26256' => 'bca', 'BcaB06g26257' => 'bca', 'BcaB06g28379' => 'bca', 'BcaC02g11159' => 'bca', 'BcaC03g13258' => 'bca', 'BcaC03g13259' => 'bca', 'BcaC05g24456' => 'bca', 'BcaC05g24457' => 'bca', 'BcaC07g36922' => 'bca', 'BcaC07g36923' => 'bca', 'BcaC07g42050' => 'bca', 'BcaC07g42176' => 'bca', 'BcaC07g42195' => 'bca', 'BcaC07g42196' => 'bca', 'BcaNung06674' => 'bca', 'BolC2t06351H' => 'bol', 'BolC2t06352H' => 'bol', 'BolC3t12993H' => 'bol', 'BolC4t23525H' => 'bol', 'BolC4t27475H' => 'bol', 'BolC5t29025H' => 'bol', 'BolC5t29026H' => 'bol', 'BolC8t46898H' => 'bol', 'BolC8t46899H' => 'bol', 'BolC8t52630H' => 'bol', 'BolC8t52765H' => 'bol', 'BolC9t53824H' => 'bol', 'BraA03t09760Z' => 'bra', 'BraA03t10990Z' => 'bra', 'BraA05t20413Z' => 'bra', 'BraA08t35602Z' => 'bra', 'BraA09t36458Z' => 'bra', 'BraA09t42018Z' => 'bra', 'BraA09t42129Z' => 'bra', 'BraA10t42536Z' => 'bra', 'BraA10t42537Z' => 'bra', 'C01p10690' => 'bna', 'C02p03890' => 'bna', 'C02p03900' => 'bna', 'C03p04620' => 'bna', 'C04p19870' => 'bna', 'C04p59670' => 'bna', 'C05p02460' => 'bna', 'C05p02470' => 'bna', 'C08p00980' => 'bna', 'C08p00990' => 'bna', 'C08p51030' => 'bna', 'C08p52360' => 'bna', 'C09p09120' => 'bna', 'CAN.G19.15' => 'can', 'CAN.G251.10' => 'can', 'CAN.G251.9' => 'can', 'CAN.G398.24' => 'can', 'CAN.G410.32' => 'can', 'CAN.G881.2' => 'can', 'CANSAT01G3025' => 'cansat', 'CANSAT78G1211' => 'cansat', 'CANSAT78G1218' => 'cansat', 'CANSAT78G1521' => 'cansat', 'CANSAT78G1670' => 'cansat', 'CARHR003600' => 'chi', 'CARHR003610' => 'chi', 'CARHR006290' => 'chi', 'CARHR006430' => 'chi', 'CARHR124110' => 'chi', 'CARHR203870' => 'chi', 'CARHR203880' => 'chi', 'CARHR203890' => 'chi', 'CARHR276880' => 'chi', 'Carub.0001s0346' => 'cru', 'Carub.0001s0347' => 'cru', 'Carub.0001s0607' => 'cru', 'Carub.0003s2768' => 'cru', 'Carub.0003s2769' => 'cru', 'Carub.0004s1178' => 'cru', 'Carub.0006s0806' => 'cru', 'Carub.0006s0807' => 'cru', 'Carub.0006s0808' => 'cru', 'Carub.0008s0501' => 'cru', 'Carub.0008s2379' => 'cru', 'Ca_08655_v3' => 'car', 'Ca_08922_v3' => 'car', 'Ca_08923_v3' => 'car', 'Ca_09119_v3' => 'car', 'Ca_09703_v3' => 'car', 'Ca_09705_v3' => 'car', 'Ca_09835_v3' => 'car', 'Ca_26403_v3' => 'car', 'Ca_30719_v3' => 'car', 'CBR_g17958' => 'cbr', 'CBR_g40516' => 'cbr', 'Cc00_g05350' => 'ccan', 'Cc01_g18690' => 'ccan', 'Cc03_g04830' => 'ccan', 'Cc03_g04850' => 'ccan', 'CDE02G4469' => 'cde', 'CDE06G0883' => 'cde', 'CDE06G1295' => 'cde', 'CDE06G1390' => 'cde', 'CDE07G0584' => 'cde', 'CDE07G1084' => 'cde', 'CDE08G1259' => 'cde', 'Cfa002341' => 'cfa', 'Cfa024337' => 'cfa', 'Ciclev10004749m.g' => 'ccl', 'Ciclev10006127m.g' => 'ccl', 'Ciclev10019720m.g' => 'ccl', 'Ciclev10022652m.g' => 'ccl', 'CiPaw.01G190400' => 'cil', 'CiPaw.01G190500' => 'cil', 'CiPaw.02G116400' => 'cil', 'CiPaw.02G116500' => 'cil', 'CiPaw.04G183000' => 'cil', 'CiPaw.04G183300' => 'cil', 'ClCG05G004610' => 'cla', 'ClCG05G004620' => 'cla', 'ClCG06G006730' => 'cla', 'ClCG06G006740' => 'cla', 'ClCG11G003690' => 'cla', 'COL.COLO4_08276' => 'col', 'COL.COLO4_08277' => 'col', 'COL.COLO4_15787' => 'col', 'COL.COLO4_15789' => 'col', 'Cpa.g.c44815' => 'cpa', 'Cpa.g.sc52.144' => 'cpa', 'Cpa.g.sc58.46' => 'cpa', 'Cpa.g.sc58.47' => 'cpa', 'Cre08.g360900' => 'cre', 'CsaV3_2G013030' => 'csa', 'CsaV3_2G013050' => 'csa', 'CsaV3_2G015620' => 'csa', 'CsaV3_3G012590' => 'csa', 'CsaV3_3G012600' => 'csa', 'CSS0001641' => 'camsi', 'CSS0008310' => 'camsi', 'CSS0013011' => 'camsi', 'CSS0017147' => 'camsi', 'CSS0022970' => 'camsi', 'CSS0025655' => 'camsi', 'CSS0028665' => 'camsi', 'CSS0029117' => 'camsi', 'CSS0032024' => 'camsi', 'CSS0039681' => 'camsi', 'CSS0046516' => 'camsi', 'CSS0050307' => 'camsi', 'DCAR_005871' => 'dca', 'DCAR_007342' => 'dca', 'DCAR_024228' => 'dca', 'DCAR_027277' => 'dca', 'DCAR_030718' => 'dca', 'Dinv20287' => 'din', 'Dinv22461' => 'din', 'Dinv22464' => 'din', 'Dinv29912' => 'din', 'Dinv29913' => 'din', 'Dinv34580' => 'din', 'Dinv34582' => 'din', 'Dinv44632' => 'din', 'Duzib052G0266' => 'dzi', 'Duzib133G0907' => 'dzi', 'Duzib133G1034' => 'dzi', 'Duzib138G0207' => 'dzi', 'Duzib138G0491' => 'dzi', 'Duzib151G0812' => 'dzi', 'Duzib151G1166' => 'dzi', 'Duzib168G0192' => 'dzi', 'Duzib211G0077' => 'dzi', 'Duzib212G0429' => 'dzi', 'Duzib212G0472' => 'dzi', 'ECA233G2617' => 'eca', 'ECA236G4188' => 'eca', 'ECA240G0936' => 'eca', 'ECA240G1129' => 'eca', 'ECA247G0623' => 'eca', 'EL10Ac5g10451' => 'bvu', 'EL10Ac5g10453' => 'bvu', 'EL10Ac5g10894' => 'bvu', 'Eucgr.H00192' => 'egr', 'Eucgr.H00193' => 'egr', 'Eucgr.H00194' => 'egr', 'Eucgr.J01562' => 'egr', 'Eucgr.K03301' => 'egr', 'FAN02G0632' => 'fan', 'FAN05G5378' => 'fan', 'FAN09G3247' => 'fan', 'FAN12G0435' => 'fan', 'FAN12G2426' => 'fan', 'FAN14G1707' => 'fan', 'FAN14G4725' => 'fan', 'FAN15G2071' => 'fan', 'FAN17G3065' => 'fan', 'FAN19G1376' => 'fan', 'FAN20G0354' => 'fan', 'FAN20G2429' => 'fan', 'FAN20G2658' => 'fan', 'FAN24G2343' => 'fan', 'FAN27G2362' => 'fan', 'FAN28G1765' => 'fan', 'FvH4_1g16020' => 'fve', 'FvH4_2g04890' => 'fve', 'FvH4_2g22270' => 'fve', 'FvH4_4g02630' => 'fve', 'FvH4_4g02640' => 'fve', 'FvH4_6g02650' => 'fve', 'Glyma.02G140600' => 'gma', 'Glyma.03G159900' => 'gma', 'Glyma.05G234800' => 'gma', 'Glyma.07G269600' => 'gma', 'Glyma.08G042300' => 'gma', 'Glyma.10G033500' => 'gma', 'Glyma.10G185200' => 'gma', 'Glyma.17G004300' => 'gma', 'Glyma.19G161900' => 'gma', 'Glyma.20G205100' => 'gma', 'Glyma.20G205200' => 'gma', 'Gohir.A01G139101' => 'ghi', 'Gohir.A02G035600' => 'ghi', 'Gohir.A02G117901' => 'ghi', 'Gohir.A07G210100' => 'ghi', 'Gohir.A07G210200' => 'ghi', 'Gohir.A08G061100' => 'ghi', 'Gohir.A09G223000' => 'ghi', 'Gohir.A09G223100' => 'ghi', 'Gohir.A10G113900' => 'ghi', 'Gohir.A10G114000' => 'ghi', 'Gohir.D02G042300' => 'ghi', 'Gohir.D07G216100' => 'ghi', 'Gohir.D07G216200' => 'ghi', 'Gohir.D08G070400' => 'ghi', 'Gohir.D09G225000' => 'ghi', 'Gohir.D09G225100' => 'ghi', 'Gohir.D10G152300' => 'ghi', 'Gohir.D10G153200' => 'ghi', 'Gohir.D11G133701' => 'ghi', 'Gorai.004G074100' => 'gra', 'Gorai.005G046800' => 'gra', 'Gorai.006G246500' => 'gra', 'Gorai.006G246600' => 'gra', 'Gorai.007G142900' => 'gra', 'Gorai.011G171000' => 'gra', 'Gorai.011G171100' => 'gra', 'Gorai.013G104300' => 'gra', 'Gorai.013G104400' => 'gra', 'GSVIVG01000754001' => 'vvi', 'GSVIVG01000756001' => 'vvi', 'GSVIVG01010903001' => 'vvi', 'GSVIVG01017623001' => 'vvi', 'GSVIVG01018113001' => 'vvi', 'GSVIVG01018116001' => 'vvi', 'GSVIVG01018118001' => 'vvi', 'HanXRQChr03g0076211' => 'han', 'HanXRQChr03g0092431' => 'han', 'HanXRQChr03g0092441' => 'han', 'HanXRQChr03g0092591' => 'han', 'HanXRQChr03g0092671' => 'han', 'HanXRQChr03g0092681' => 'han', 'HanXRQChr03g0092691' => 'han', 'HanXRQChr03g0092701' => 'han', 'HanXRQChr03g0092721' => 'han', 'HanXRQChr03g0092731' => 'han', 'HanXRQChr04g0113681' => 'han', 'HanXRQChr10g0281371' => 'han', 'HanXRQChr11g0337141' => 'han', 'HanXRQChr13g0424521' => 'han', 'HanXRQChr13g0424531' => 'han', 'HanXRQChr13g0424541' => 'han', 'HanXRQChr16g0498221' => 'han', 'Haze_04377' => 'cav', 'Haze_11298' => 'cav', 'Haze_24547' => 'cav', 'Haze_24550' => 'cav', 'Haze_26587' => 'cav', 'Hma1.2p1_0650F.1_g195410' => 'hma', 'Hma1.2p1_0893F.1_g233470' => 'hma', 'HPP92_006508' => 'vpl', 'HPP92_024780' => 'vpl', 'Hund02688' => 'sun', 'Hund09380' => 'sun', 'Hund09381' => 'sun', 'Hund09832' => 'sun', 'Hund09833' => 'sun', 'Hund11351' => 'sun', 'Hund11513' => 'sun', 'Lalb_Chr06g0162591' => 'lal', 'Lalb_Chr06g0162601' => 'lal', 'Lalb_Chr06g0169321' => 'lal', 'Lalb_Chr09g0330951' => 'lal', 'Lalb_Chr16g0387631' => 'lal', 'Lalb_Chr21g0306241' => 'lal', 'Lalb_Chr25g0290051' => 'lal', 'Lalb_Chr25g0290061' => 'lal', 'Lalb_Chr25g0290071' => 'lal', 'Lj1g0003876' => 'lja', 'Lj1P1207T36' => 'lonja', 'Lj2C1156G12' => 'lonja', 'Lj3A793G39' => 'lonja', 'Lj3C580G2' => 'lonja', 'Lj3C780G2' => 'lonja', 'Lj3C780T4' => 'lonja', 'Lj3C793G9' => 'lonja', 'Lj4g0012960' => 'lja', 'Lj5g0021252' => 'lja', 'Lj5g0021484' => 'lja', 'Lj5g0024528' => 'lja', 'Lj6A399T12' => 'lonja', 'Lj6A656G65' => 'lonja', 'Lsat_1_v5_gn_3_125500' => 'lsa', 'Lsat_1_v5_gn_3_125540' => 'lsa', 'Lsat_1_v5_gn_5_72701' => 'lsa', 'Lsat_1_v5_gn_8_91560' => 'lsa', 'Lsat_1_v5_gn_9_9640' => 'lsa', 'Manes.01G200600' => 'mes', 'Manes.01G200700' => 'mes', 'Manes.03G168900' => 'mes', 'Manes.03G169000' => 'mes', 'Manes.05G085801' => 'mes', 'Manes.05G086200' => 'mes', 'Manes.15G036700' => 'mes', 'Manes.15G036900' => 'mes', 'Mapoly0004s0172' => 'mpo', 'Mapoly0023s0001' => 'mpo', 'Mapoly0142s0012' => 'mpo', 'MBI01_g32854_MAGBIO' => 'mbi', 'MBI11_g24427_MAGBIO' => 'mbi', 'MBI11_g47319_MAGBIO' => 'mbi', 'MCO01G433' => 'mco', 'MD00G1187800' => 'mdo', 'MD04G1226500' => 'mdo', 'MD05G1203900' => 'mdo', 'MD10G1191100' => 'mdo', 'MD12G1243500' => 'mdo', 'MD13G1207000' => 'mdo', 'MD13G1207100' => 'mdo', 'MD16G1208600' => 'mdo', 'Medtr1g050352' => 'mtr', 'Medtr1g070385' => 'mtr', 'Medtr1g070450' => 'mtr', 'Medtr1g075200' => 'mtr', 'Medtr1g075250' => 'mtr', 'Medtr1g075260' => 'mtr', 'Medtr1g475250' => 'mtr', 'Medtr4g075450' => 'mtr', 'Medtr7g096300' => 'mtr', 'Medtr8g105110' => 'mtr', 'MELO3C006470.2' => 'cme', 'MELO3C006471.2' => 'cme', 'MELO3C020772.2' => 'cme', 'MELO3C026780.2' => 'cme', 'MELO3C026781.2' => 'cme', 'Migut.D00390' => 'egut', 'Migut.G00435' => 'egut', 'Migut.G00436' => 'egut', 'Migut.G00718' => 'egut', 'MSTRG.21891' => 'ama', 'MSTRG.26910' => 'ama', 'MSTRG.4099' => 'ama', 'MSTRG.9925' => 'ama', 'Nitab4.5_0000165g0010' => 'nta', 'Nitab4.5_0000209g0180' => 'nta', 'Nitab4.5_0000244g0440' => 'nta', 'Nitab4.5_0000525g0220' => 'nta', 'Nitab4.5_0001597g0020' => 'nta', 'Nitab4.5_0001878g0040' => 'nta', 'Nitab4.5_0001878g0060' => 'nta', 'Nitab4.5_0002838g0100' => 'nta', 'Nitab4.5_0002838g0120' => 'nta', 'Nitab4.5_0004798g0030' => 'nta', 'Nitab4.5_0005420g0010' => 'nta', 'Nitab4.5_0005507g0010' => 'nta', 'Nitab4.5_0005574g0020' => 'nta', 'Nitab4.5_0005838g0010' => 'nta', 'Nitab4.5_0010580g0020' => 'nta', 'Nn1g02599' => 'nnu', 'Nn1g02608' => 'nnu', 'Nn3g17742' => 'nnu', 'Nn3g19534' => 'nnu', 'Nn3g19535' => 'nnu', 'Oeu008790.1' => 'oeu', 'Oeu008792.1' => 'oeu', 'Oeu032590.1' => 'oeu', 'Oeu035349.1' => 'oeu', 'Oeu049791.1' => 'oeu', 'Os01g0774500' => 'osa', 'Os03g0628800' => 'osa', 'Os03g0798600' => 'osa', 'Os05g0508800' => 'osa', 'Peaxi162Scf00036g02018' => 'pax', 'Peaxi162Scf00578g00032' => 'pax', 'Peaxi162Scf00578g00317' => 'pax', 'Peaxi162Scf00785g00114' => 'pax', 'Peaxi162Scf00813g00119' => 'pax', 'Peaxi162Scf00906g00227' => 'pax', 'PGR004G0875' => 'pgr', 'PGR004G2424' => 'pgr', 'PGR031G1239' => 'pgr', 'PGR031G2474' => 'pgr', 'PGR044G0423' => 'pgr', 'PGSC0003DMG400001128' => 'stu', 'PGSC0003DMG400007336' => 'stu', 'PGSC0003DMG400016318' => 'stu', 'PGSC0003DMG400016319' => 'stu', 'PGSC0003DMG400018074' => 'stu', 'Phvul.001G157700' => 'pvu', 'Phvul.002G148550' => 'pvu', 'Phvul.002G320200' => 'pvu', 'Phvul.003G089200' => 'pvu', 'Phvul.007G126000' => 'pvu', 'Phvul.007G126100' => 'pvu', 'Phvul.007G178000' => 'pvu', 'Phvul.007G178200' => 'pvu', 'Potri.002G043000' => 'ptr', 'Potri.002G043200' => 'ptr', 'Potri.003G123750' => 'ptr', 'Potri.005G055401' => 'ptr', 'Potri.005G219700' => 'ptr', 'Potri.005G220000' => 'ptr', 'Potri.008G161901' => 'ptr', 'Potri.008G162000' => 'ptr', 'Potri.008G162400' => 'ptr', 'Potri.010G076900' => 'ptr', 'Pp3c12_9180' => 'ppa', 'Pp3c13_19770' => 'ppa', 'Pp3c14_22950' => 'ppa', 'Pp3c16_12160' => 'ppa', 'Pp3c27_7820' => 'ppa', 'Pp3c2_3490' => 'ppa', 'Pp3c3_23700' => 'ppa', 'Pp3c3_36520' => 'ppa', 'Pp3c4_15250' => 'ppa', 'PRCOL_00007002' => 'pco', 'Prupe.1G030600' => 'ppe', 'Prupe.1G030700' => 'ppe', 'Prupe.6G345200' => 'ppe', 'Prupe.8G230300' => 'ppe', 'Prupe.8G230500' => 'ppe', 'Psat3g059600' => 'psa', 'Psat5g200920' => 'psa', 'Psat6g056440' => 'psa', 'Psat6g057360' => 'psa', 'Psat6g134120' => 'psa', 'Psat6g134160' => 'psa', 'Psat7g008640' => 'psa', 'Psat7g185240' => 'psa', 'PSO017G1330' => 'pso', 'PSO063G6097' => 'pso', 'PSO170G0835' => 'pso', 'PSO170G2499' => 'pso', 'PSO210G5058' => 'pso', 'PSO210G6154' => 'pso', 'PSO585G0031' => 'pso', 'PSO832G0264' => 'pso', 'PSO832G4288' => 'pso', 'QL03p027355' => 'qlo', 'QL03p027430' => 'qlo', 'QL04p081380' => 'qlo', 'QL06p015642' => 'qlo', 'QL06p015650' => 'qlo', 'QL06p015686' => 'qlo', 'QL12p042927' => 'qlo', 'QL93p1863_0035' => 'qlo', 'RcHm_v2.0_Chr3g0450581' => 'rch', 'RcHm_v2.0_Chr4g0390371' => 'rch', 'RcHm_v2.0_Chr4g0390381' => 'rch', 'RcHm_v2.0_Chr4g0390491' => 'rch', 'RcHm_v2.0_Chr4g0390501' => 'rch', 'RcHm_v2.0_Chr6g0289231' => 'rch', 'Rhsim04G0190400' => 'rsi', 'Rhsim04G0190500' => 'rsi', 'Rhsim04G0190600' => 'rsi', 'Rhsim13G0031400' => 'rsi', 'Rhsim13G0165600' => 'rsi', 'RhsimUnG0114600' => 'rsi', 'RhsimUnG0114700' => 'rsi', 'Sabra02G0034800' => 'sbr', 'Sabra02G0035100' => 'sbr', 'Sabra05G0168600' => 'sbr', 'Sabra05G0168800' => 'sbr', 'Sabra08G0123700' => 'sbr', 'Sabra10G0031900' => 'sbr', 'Sabra13G0039000' => 'sbr', 'SalBow2G0782' => 'sbo', 'SalBow2G1403' => 'sbo', 'SalBow4G0074' => 'sbo', 'SalBow4G2635' => 'sbo', 'SalBow5G3010' => 'sbo', 'Sc05g0000870' => 'sci', 'Sc05g0000890' => 'sci', 'Sc13g0005000' => 'sci', 'Sc13g0005030' => 'sci', 'Sc19g0003790' => 'sci', 'Sc19g0003800' => 'sci', 'Sed0003467' => 'sed', 'Sed0009355' => 'sed', 'Sed0009894' => 'sed', 'Sed0011972' => 'sed', 'Sed0021483' => 'sed', 'Sed0021750' => 'sed', 'Sed0026279' => 'sed', 'SEGI_05312' => 'sgi', 'SEGI_10112' => 'sgi', 'SEGI_15835' => 'sgi', 'SEGI_30386' => 'sgi', 'SEGI_34122' => 'sgi', 'SEGI_35063' => 'sgi', 'SGA_v2.0_scaffold101G29794' => 'sas', 'SGA_v2.0_scaffold1G00573' => 'sas', 'SGA_v2.0_scaffold79G25637' => 'sas', 'SGA_v2.0_scaffold88G27283' => 'sas', 'SGA_v2.0_scaffold88G27285' => 'sas', 'SGA_v2.0_scaffold88G27331' => 'sas', 'SHI09937' => 'shi', 'SMO119G0302' => 'smo', 'SMO137G0231' => 'smo', 'SMO367G1151' => 'smo', 'Solyc02g082000.3' => 'sly', 'Solyc06g031670.3' => 'sly', 'Solyc06g053810.3' => 'sly', 'Solyc07g025457.1' => 'sly', 'Solyc08g059740.1' => 'sly', 'Solyc08g059750.3' => 'sly', 'Solyc09g083370.3' => 'sly', 'Solyc12g038950.3' => 'sly', 'Sopen02g026630' => 'spe', 'Sopen06g018930' => 'spe', 'Sopen06g018940' => 'spe', 'Sopen08g009460' => 'spe', 'Sopen09g032290' => 'spe', 'Sp1g03080' => 'spa', 'Sp1g03090' => 'spa', 'Sp1g05480' => 'spa', 'Sp2g07860' => 'spa', 'Sp2g08430' => 'spa', 'Sp2g08440' => 'spa', 'Sp2g26200' => 'spa', 'Sp4g13170' => 'spa', 'Sp6g33840' => 'spa', 'SpUn1204_0010' => 'spa', 'TAR365G0908' => 'tar', 'TAR381G1270' => 'tar', 'TAR381G1651' => 'tar', 'TAR625G1131' => 'tar', 'TAR633G0962' => 'tar', 'TAR633G1729' => 'tar', 'TAR633G1864' => 'tar', 'TAR636G0221' => 'tar', 'TAR636G0314' => 'tar', 'TAR636G3202' => 'tar', 'THA.LOC104800805' => 'tha', 'THA.LOC104801096' => 'tha', 'THA.LOC104801555' => 'tha', 'THA.LOC104808491' => 'tha', 'THA.LOC104808595' => 'tha', 'THA.LOC104815985' => 'tha', 'THA.LOC104822250' => 'tha', 'THA.LOC104826071' => 'tha', 'Thecc.01G265200' => 'tca', 'Thecc.01G265300' => 'tca', 'Thecc.01G265700' => 'tca', 'Thecc.03G109100' => 'tca', 'Thecc.04G245900' => 'tca', 'Thecc.04G246000' => 'tca', 'Thhalv10003334m.g' => 'esa', 'Thhalv10005508m.g' => 'esa', 'Thhalv10005643m.g' => 'esa', 'Thhalv10007316m.g' => 'esa', 'Thhalv10009006m.g' => 'esa', 'Thhalv10009309m.g' => 'esa', 'Thhalv10014917m.g' => 'esa', 'Thhalv10014919m.g' => 'esa', 'Thhalv10015393m.g' => 'esa', 'Thhalv10016515m.g' => 'esa', 'Thhalv10029242m.g' => 'esa', 'TPR.G16654' => 'tpr', 'TPR.G20589' => 'tpr', 'TPR.G23029' => 'tpr', 'TPR.G27731' => 'tpr', 'TPR.G28889' => 'tpr', 'TPR.G28899' => 'tpr', 'TPR.G30846' => 'tpr', 'TPR.G5452' => 'tpr', 'TPR.G5713' => 'tpr', 'TPR.G9046' => 'tpr', 'TPR.G9061' => 'tpr', 'TWI09G1075' => 'twi', 'TWI12G0806' => 'twi', 'TWI18G0108' => 'twi', 'TWI53G1361' => 'twi', 'TWI73G0185' => 'twi', 'TWI73G0427' => 'twi', 'unitig_37.g12001' => 'ugi', 'unitig_747.g21660' => 'ugi', 'unitig_748.g7232' => 'ugi', 'unitig_748.g7315' => 'ugi', 'unitig_85.g27262' => 'ugi', 'unitig_92.g28220' => 'ugi', 'vmacro02632' => 'vma', 'vmacro08410' => 'vma', 'vmacro08411' => 'vma', 'vmacro15407' => 'vma', 'VMungo0251G3619' => 'vmu', 'VMungo0720G1204' => 'vmu', 'VMungo0720G1918' => 'vmu', 'VMungo0720G2387' => 'vmu', 'VMungo0720G2961' => 'vmu', 'VMungo1215G2154' => 'vmu', 'VMungo1383G2411' => 'vmu', 'Zm00001eb051130' => 'zma', 'Zm00001eb116830' => 'zma', 'Zm00001eb116850' => 'zma', 'Zm00001eb151740' => 'zma', 'Zm00001eb292360' => 'zma', 'Zm00001eb301640' => 'zma' ) $gf_id = 'HOM05D000856' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000856' ) $data_identifier = 'HOM05D000856' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 13, 'ath' => (int) 10, 'atr' => (int) 1, 'acertr' => (int) 8, 'cqu' => (int) 6, 'bca' => (int) 21, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 11, 'car' => (int) 9, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 8, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 5, 'fan' => (int) 16, 'fve' => (int) 6, 'gma' => (int) 11, 'ghi' => (int) 19, 'gra' => (int) 9, 'vvi' => (int) 7, 'han' => (int) 17, 'cav' => (int) 5, 'hma' => (int) 2, 'vpl' => (int) 2, 'sun' => (int) 7, 'lal' => (int) 9, 'lja' => (int) 5, 'lonja' => (int) 9, 'lsa' => (int) 5, 'mes' => (int) 8, 'mpo' => (int) 3, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 10, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 15, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 9, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 9, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 6, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 5, 'spa' => (int) 10, 'tar' => (int) 10, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 11, 'tpr' => (int) 11, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 4, 'vmu' => (int) 7, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb301640' $species_info = array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ) $local_species = 'ppe' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000856', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p00010' => 'bna', 'A03p04160' => 'bna', 'A03p17160' => 'bna', 'A04p23370' => 'bna', 'A05p14860' => 'bna', 'A08p37020' => 'bna', 'A09p08050' => 'bna', 'A09p66800' => 'bna', 'A09p67940' => 'bna', 'A10p02680' => 'bna', 'A10p05320' => 'bna', 'Aa31LG1G20560' => 'aar', 'Aa31LG1G20610' => 'aar', 'Aa31LG1G7810' => 'aar', 'Aa31LG5G3590' => 'aar', 'Aa31LG5G6140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3819' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4683' => 'aag', 'Actinidia04480' => 'ach', 'Actinidia05466' => 'ach', 'Actinidia08445' => 'ach', 'Actinidia21170' => 'ach', 'Actinidia24812' => 'ach', 'Actinidia24951' => 'ach', 'Actinidia40088' => 'ach', 'Ah.02g111660' => 'amhyb', 'Ah.11g048900' => 'amhyb', 'Ah.11g049910' => 'amhyb', 'AL1G13870' => 'aly', 'AL1G13880' => 'aly', 'AL1G16760' => 'aly', 'AL390U10020' => 'aly', 'AL4G25520' => 'aly', 'AL6G19890' => 'aly', 'AL6G19900' => 'aly', 'AL6G19910' => 'aly', 'AL8G40100' => 'aly', 'Aqoxy2G03562' => 'aox', 'Aqoxy5G00316' => 'aox', 'Aqoxy5G00926' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1628KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1H403S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2FU6SJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.882I6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8YRY2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YN1SN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AF70II' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZA8L1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F916KL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHRD8H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KTZ8QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S22EMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8M29T' => 'arhy', 'AT1G04270' => 'ath', 'AT1G04280' => 'ath', 'AT1G06750' => 'ath', 'AT1G33850' => 'ath', 'AT2G30630' => 'ath', 'AT5G09490' => 'ath', 'AT5G09500' => 'ath', 'AT5G09510' => 'ath', 'AT5G43640' => 'ath', 'AT5G63070' => 'ath', 'ATR0605G315' => 'atr', 'Atru.chr11.175' => 'acertr', 'Atru.chr11.653' => 'acertr', 'Atru.chr3.1616' => 'acertr', 'Atru.chr4.2230' => 'acertr', 'Atru.chr4.2232' => 'acertr', 'Atru.chr5.1598' => 'acertr', 'Atru.chr5.1600' => 'acertr', 'Atru.chr5.2188' => 'acertr', 'AUR62008326' => 'cqu', 'AUR62011922' => 'cqu', 'AUR62011924' => 'cqu', 'AUR62021771' => 'cqu', 'AUR62032237' => 'cqu', 'AUR62032240' => 'cqu', 'BcaB01g05572' => 'bca', 'BcaB02g10337' => 'bca', 'BcaB04g19944' => 'bca', 'BcaB05g21548' => 'bca', 'BcaB05g21549' => 'bca', 'BcaB05g23227' => 'bca', 'BcaB06g26256' => 'bca', 'BcaB06g26257' => 'bca', 'BcaB06g28379' => 'bca', 'BcaC02g11159' => 'bca', 'BcaC03g13258' => 'bca', 'BcaC03g13259' => 'bca', 'BcaC05g24456' => 'bca', 'BcaC05g24457' => 'bca', 'BcaC07g36922' => 'bca', 'BcaC07g36923' => 'bca', 'BcaC07g42050' => 'bca', 'BcaC07g42176' => 'bca', 'BcaC07g42195' => 'bca', 'BcaC07g42196' => 'bca', 'BcaNung06674' => 'bca', 'BolC2t06351H' => 'bol', 'BolC2t06352H' => 'bol', 'BolC3t12993H' => 'bol', 'BolC4t23525H' => 'bol', 'BolC4t27475H' => 'bol', 'BolC5t29025H' => 'bol', 'BolC5t29026H' => 'bol', 'BolC8t46898H' => 'bol', 'BolC8t46899H' => 'bol', 'BolC8t52630H' => 'bol', 'BolC8t52765H' => 'bol', 'BolC9t53824H' => 'bol', 'BraA03t09760Z' => 'bra', 'BraA03t10990Z' => 'bra', 'BraA05t20413Z' => 'bra', 'BraA08t35602Z' => 'bra', 'BraA09t36458Z' => 'bra', 'BraA09t42018Z' => 'bra', 'BraA09t42129Z' => 'bra', 'BraA10t42536Z' => 'bra', 'BraA10t42537Z' => 'bra', 'C01p10690' => 'bna', 'C02p03890' => 'bna', 'C02p03900' => 'bna', 'C03p04620' => 'bna', 'C04p19870' => 'bna', 'C04p59670' => 'bna', 'C05p02460' => 'bna', 'C05p02470' => 'bna', 'C08p00980' => 'bna', 'C08p00990' => 'bna', 'C08p51030' => 'bna', 'C08p52360' => 'bna', 'C09p09120' => 'bna', 'CAN.G19.15' => 'can', 'CAN.G251.10' => 'can', 'CAN.G251.9' => 'can', 'CAN.G398.24' => 'can', 'CAN.G410.32' => 'can', 'CAN.G881.2' => 'can', 'CANSAT01G3025' => 'cansat', 'CANSAT78G1211' => 'cansat', 'CANSAT78G1218' => 'cansat', 'CANSAT78G1521' => 'cansat', 'CANSAT78G1670' => 'cansat', 'CARHR003600' => 'chi', 'CARHR003610' => 'chi', 'CARHR006290' => 'chi', 'CARHR006430' => 'chi', 'CARHR124110' => 'chi', 'CARHR203870' => 'chi', 'CARHR203880' => 'chi', 'CARHR203890' => 'chi', 'CARHR276880' => 'chi', 'Carub.0001s0346' => 'cru', 'Carub.0001s0347' => 'cru', 'Carub.0001s0607' => 'cru', 'Carub.0003s2768' => 'cru', 'Carub.0003s2769' => 'cru', 'Carub.0004s1178' => 'cru', 'Carub.0006s0806' => 'cru', 'Carub.0006s0807' => 'cru', 'Carub.0006s0808' => 'cru', 'Carub.0008s0501' => 'cru', 'Carub.0008s2379' => 'cru', 'Ca_08655_v3' => 'car', 'Ca_08922_v3' => 'car', 'Ca_08923_v3' => 'car', 'Ca_09119_v3' => 'car', 'Ca_09703_v3' => 'car', 'Ca_09705_v3' => 'car', 'Ca_09835_v3' => 'car', 'Ca_26403_v3' => 'car', 'Ca_30719_v3' => 'car', 'CBR_g17958' => 'cbr', 'CBR_g40516' => 'cbr', 'Cc00_g05350' => 'ccan', 'Cc01_g18690' => 'ccan', 'Cc03_g04830' => 'ccan', 'Cc03_g04850' => 'ccan', 'CDE02G4469' => 'cde', 'CDE06G0883' => 'cde', 'CDE06G1295' => 'cde', 'CDE06G1390' => 'cde', 'CDE07G0584' => 'cde', 'CDE07G1084' => 'cde', 'CDE08G1259' => 'cde', 'Cfa002341' => 'cfa', 'Cfa024337' => 'cfa', 'Ciclev10004749m.g' => 'ccl', 'Ciclev10006127m.g' => 'ccl', 'Ciclev10019720m.g' => 'ccl', 'Ciclev10022652m.g' => 'ccl', 'CiPaw.01G190400' => 'cil', 'CiPaw.01G190500' => 'cil', 'CiPaw.02G116400' => 'cil', 'CiPaw.02G116500' => 'cil', 'CiPaw.04G183000' => 'cil', 'CiPaw.04G183300' => 'cil', 'ClCG05G004610' => 'cla', 'ClCG05G004620' => 'cla', 'ClCG06G006730' => 'cla', 'ClCG06G006740' => 'cla', 'ClCG11G003690' => 'cla', 'COL.COLO4_08276' => 'col', 'COL.COLO4_08277' => 'col', 'COL.COLO4_15787' => 'col', 'COL.COLO4_15789' => 'col', 'Cpa.g.c44815' => 'cpa', 'Cpa.g.sc52.144' => 'cpa', 'Cpa.g.sc58.46' => 'cpa', 'Cpa.g.sc58.47' => 'cpa', 'Cre08.g360900' => 'cre', 'CsaV3_2G013030' => 'csa', 'CsaV3_2G013050' => 'csa', 'CsaV3_2G015620' => 'csa', 'CsaV3_3G012590' => 'csa', 'CsaV3_3G012600' => 'csa', 'CSS0001641' => 'camsi', 'CSS0008310' => 'camsi', 'CSS0013011' => 'camsi', 'CSS0017147' => 'camsi', 'CSS0022970' => 'camsi', 'CSS0025655' => 'camsi', 'CSS0028665' => 'camsi', 'CSS0029117' => 'camsi', 'CSS0032024' => 'camsi', 'CSS0039681' => 'camsi', 'CSS0046516' => 'camsi', 'CSS0050307' => 'camsi', 'DCAR_005871' => 'dca', 'DCAR_007342' => 'dca', 'DCAR_024228' => 'dca', 'DCAR_027277' => 'dca', 'DCAR_030718' => 'dca', 'Dinv20287' => 'din', 'Dinv22461' => 'din', 'Dinv22464' => 'din', 'Dinv29912' => 'din', 'Dinv29913' => 'din', 'Dinv34580' => 'din', 'Dinv34582' => 'din', 'Dinv44632' => 'din', 'Duzib052G0266' => 'dzi', 'Duzib133G0907' => 'dzi', 'Duzib133G1034' => 'dzi', 'Duzib138G0207' => 'dzi', 'Duzib138G0491' => 'dzi', 'Duzib151G0812' => 'dzi', 'Duzib151G1166' => 'dzi', 'Duzib168G0192' => 'dzi', 'Duzib211G0077' => 'dzi', 'Duzib212G0429' => 'dzi', 'Duzib212G0472' => 'dzi', 'ECA233G2617' => 'eca', 'ECA236G4188' => 'eca', 'ECA240G0936' => 'eca', 'ECA240G1129' => 'eca', 'ECA247G0623' => 'eca', 'EL10Ac5g10451' => 'bvu', 'EL10Ac5g10453' => 'bvu', 'EL10Ac5g10894' => 'bvu', 'Eucgr.H00192' => 'egr', 'Eucgr.H00193' => 'egr', 'Eucgr.H00194' => 'egr', 'Eucgr.J01562' => 'egr', 'Eucgr.K03301' => 'egr', 'FAN02G0632' => 'fan', 'FAN05G5378' => 'fan', 'FAN09G3247' => 'fan', 'FAN12G0435' => 'fan', 'FAN12G2426' => 'fan', 'FAN14G1707' => 'fan', 'FAN14G4725' => 'fan', 'FAN15G2071' => 'fan', 'FAN17G3065' => 'fan', 'FAN19G1376' => 'fan', 'FAN20G0354' => 'fan', 'FAN20G2429' => 'fan', 'FAN20G2658' => 'fan', 'FAN24G2343' => 'fan', 'FAN27G2362' => 'fan', 'FAN28G1765' => 'fan', 'FvH4_1g16020' => 'fve', 'FvH4_2g04890' => 'fve', 'FvH4_2g22270' => 'fve', 'FvH4_4g02630' => 'fve', 'FvH4_4g02640' => 'fve', 'FvH4_6g02650' => 'fve', 'Glyma.02G140600' => 'gma', 'Glyma.03G159900' => 'gma', 'Glyma.05G234800' => 'gma', 'Glyma.07G269600' => 'gma', 'Glyma.08G042300' => 'gma', 'Glyma.10G033500' => 'gma', 'Glyma.10G185200' => 'gma', 'Glyma.17G004300' => 'gma', 'Glyma.19G161900' => 'gma', 'Glyma.20G205100' => 'gma', 'Glyma.20G205200' => 'gma', 'Gohir.A01G139101' => 'ghi', 'Gohir.A02G035600' => 'ghi', 'Gohir.A02G117901' => 'ghi', 'Gohir.A07G210100' => 'ghi', 'Gohir.A07G210200' => 'ghi', 'Gohir.A08G061100' => 'ghi', 'Gohir.A09G223000' => 'ghi', 'Gohir.A09G223100' => 'ghi', 'Gohir.A10G113900' => 'ghi', 'Gohir.A10G114000' => 'ghi', 'Gohir.D02G042300' => 'ghi', 'Gohir.D07G216100' => 'ghi', 'Gohir.D07G216200' => 'ghi', 'Gohir.D08G070400' => 'ghi', 'Gohir.D09G225000' => 'ghi', 'Gohir.D09G225100' => 'ghi', 'Gohir.D10G152300' => 'ghi', 'Gohir.D10G153200' => 'ghi', 'Gohir.D11G133701' => 'ghi', 'Gorai.004G074100' => 'gra', 'Gorai.005G046800' => 'gra', 'Gorai.006G246500' => 'gra', 'Gorai.006G246600' => 'gra', 'Gorai.007G142900' => 'gra', 'Gorai.011G171000' => 'gra', 'Gorai.011G171100' => 'gra', 'Gorai.013G104300' => 'gra', 'Gorai.013G104400' => 'gra', 'GSVIVG01000754001' => 'vvi', 'GSVIVG01000756001' => 'vvi', 'GSVIVG01010903001' => 'vvi', 'GSVIVG01017623001' => 'vvi', 'GSVIVG01018113001' => 'vvi', 'GSVIVG01018116001' => 'vvi', 'GSVIVG01018118001' => 'vvi', 'HanXRQChr03g0076211' => 'han', 'HanXRQChr03g0092431' => 'han', 'HanXRQChr03g0092441' => 'han', 'HanXRQChr03g0092591' => 'han', 'HanXRQChr03g0092671' => 'han', 'HanXRQChr03g0092681' => 'han', 'HanXRQChr03g0092691' => 'han', 'HanXRQChr03g0092701' => 'han', 'HanXRQChr03g0092721' => 'han', 'HanXRQChr03g0092731' => 'han', 'HanXRQChr04g0113681' => 'han', 'HanXRQChr10g0281371' => 'han', 'HanXRQChr11g0337141' => 'han', 'HanXRQChr13g0424521' => 'han', 'HanXRQChr13g0424531' => 'han', 'HanXRQChr13g0424541' => 'han', 'HanXRQChr16g0498221' => 'han', 'Haze_04377' => 'cav', 'Haze_11298' => 'cav', 'Haze_24547' => 'cav', 'Haze_24550' => 'cav', 'Haze_26587' => 'cav', 'Hma1.2p1_0650F.1_g195410' => 'hma', 'Hma1.2p1_0893F.1_g233470' => 'hma', 'HPP92_006508' => 'vpl', 'HPP92_024780' => 'vpl', 'Hund02688' => 'sun', 'Hund09380' => 'sun', 'Hund09381' => 'sun', 'Hund09832' => 'sun', 'Hund09833' => 'sun', 'Hund11351' => 'sun', 'Hund11513' => 'sun', 'Lalb_Chr06g0162591' => 'lal', 'Lalb_Chr06g0162601' => 'lal', 'Lalb_Chr06g0169321' => 'lal', 'Lalb_Chr09g0330951' => 'lal', 'Lalb_Chr16g0387631' => 'lal', 'Lalb_Chr21g0306241' => 'lal', 'Lalb_Chr25g0290051' => 'lal', 'Lalb_Chr25g0290061' => 'lal', 'Lalb_Chr25g0290071' => 'lal', 'Lj1g0003876' => 'lja', 'Lj1P1207T36' => 'lonja', 'Lj2C1156G12' => 'lonja', 'Lj3A793G39' => 'lonja', 'Lj3C580G2' => 'lonja', 'Lj3C780G2' => 'lonja', 'Lj3C780T4' => 'lonja', 'Lj3C793G9' => 'lonja', 'Lj4g0012960' => 'lja', 'Lj5g0021252' => 'lja', 'Lj5g0021484' => 'lja', 'Lj5g0024528' => 'lja', 'Lj6A399T12' => 'lonja', 'Lj6A656G65' => 'lonja', 'Lsat_1_v5_gn_3_125500' => 'lsa', 'Lsat_1_v5_gn_3_125540' => 'lsa', 'Lsat_1_v5_gn_5_72701' => 'lsa', 'Lsat_1_v5_gn_8_91560' => 'lsa', 'Lsat_1_v5_gn_9_9640' => 'lsa', 'Manes.01G200600' => 'mes', 'Manes.01G200700' => 'mes', 'Manes.03G168900' => 'mes', 'Manes.03G169000' => 'mes', 'Manes.05G085801' => 'mes', 'Manes.05G086200' => 'mes', 'Manes.15G036700' => 'mes', 'Manes.15G036900' => 'mes', 'Mapoly0004s0172' => 'mpo', 'Mapoly0023s0001' => 'mpo', 'Mapoly0142s0012' => 'mpo', 'MBI01_g32854_MAGBIO' => 'mbi', 'MBI11_g24427_MAGBIO' => 'mbi', 'MBI11_g47319_MAGBIO' => 'mbi', 'MCO01G433' => 'mco', 'MD00G1187800' => 'mdo', 'MD04G1226500' => 'mdo', 'MD05G1203900' => 'mdo', 'MD10G1191100' => 'mdo', 'MD12G1243500' => 'mdo', 'MD13G1207000' => 'mdo', 'MD13G1207100' => 'mdo', 'MD16G1208600' => 'mdo', 'Medtr1g050352' => 'mtr', 'Medtr1g070385' => 'mtr', 'Medtr1g070450' => 'mtr', 'Medtr1g075200' => 'mtr', 'Medtr1g075250' => 'mtr', 'Medtr1g075260' => 'mtr', 'Medtr1g475250' => 'mtr', 'Medtr4g075450' => 'mtr', 'Medtr7g096300' => 'mtr', 'Medtr8g105110' => 'mtr', 'MELO3C006470.2' => 'cme', 'MELO3C006471.2' => 'cme', 'MELO3C020772.2' => 'cme', 'MELO3C026780.2' => 'cme', 'MELO3C026781.2' => 'cme', 'Migut.D00390' => 'egut', 'Migut.G00435' => 'egut', 'Migut.G00436' => 'egut', 'Migut.G00718' => 'egut', 'MSTRG.21891' => 'ama', 'MSTRG.26910' => 'ama', 'MSTRG.4099' => 'ama', 'MSTRG.9925' => 'ama', 'Nitab4.5_0000165g0010' => 'nta', 'Nitab4.5_0000209g0180' => 'nta', 'Nitab4.5_0000244g0440' => 'nta', 'Nitab4.5_0000525g0220' => 'nta', 'Nitab4.5_0001597g0020' => 'nta', 'Nitab4.5_0001878g0040' => 'nta', 'Nitab4.5_0001878g0060' => 'nta', 'Nitab4.5_0002838g0100' => 'nta', 'Nitab4.5_0002838g0120' => 'nta', 'Nitab4.5_0004798g0030' => 'nta', 'Nitab4.5_0005420g0010' => 'nta', 'Nitab4.5_0005507g0010' => 'nta', 'Nitab4.5_0005574g0020' => 'nta', 'Nitab4.5_0005838g0010' => 'nta', 'Nitab4.5_0010580g0020' => 'nta', 'Nn1g02599' => 'nnu', 'Nn1g02608' => 'nnu', 'Nn3g17742' => 'nnu', 'Nn3g19534' => 'nnu', 'Nn3g19535' => 'nnu', 'Oeu008790.1' => 'oeu', 'Oeu008792.1' => 'oeu', 'Oeu032590.1' => 'oeu', 'Oeu035349.1' => 'oeu', 'Oeu049791.1' => 'oeu', 'Os01g0774500' => 'osa', 'Os03g0628800' => 'osa', 'Os03g0798600' => 'osa', 'Os05g0508800' => 'osa', 'Peaxi162Scf00036g02018' => 'pax', 'Peaxi162Scf00578g00032' => 'pax', 'Peaxi162Scf00578g00317' => 'pax', 'Peaxi162Scf00785g00114' => 'pax', 'Peaxi162Scf00813g00119' => 'pax', 'Peaxi162Scf00906g00227' => 'pax', 'PGR004G0875' => 'pgr', 'PGR004G2424' => 'pgr', 'PGR031G1239' => 'pgr', 'PGR031G2474' => 'pgr', 'PGR044G0423' => 'pgr', 'PGSC0003DMG400001128' => 'stu', 'PGSC0003DMG400007336' => 'stu', 'PGSC0003DMG400016318' => 'stu', 'PGSC0003DMG400016319' => 'stu', 'PGSC0003DMG400018074' => 'stu', 'Phvul.001G157700' => 'pvu', 'Phvul.002G148550' => 'pvu', 'Phvul.002G320200' => 'pvu', 'Phvul.003G089200' => 'pvu', 'Phvul.007G126000' => 'pvu', 'Phvul.007G126100' => 'pvu', 'Phvul.007G178000' => 'pvu', 'Phvul.007G178200' => 'pvu', 'Potri.002G043000' => 'ptr', 'Potri.002G043200' => 'ptr', 'Potri.003G123750' => 'ptr', 'Potri.005G055401' => 'ptr', 'Potri.005G219700' => 'ptr', 'Potri.005G220000' => 'ptr', 'Potri.008G161901' => 'ptr', 'Potri.008G162000' => 'ptr', 'Potri.008G162400' => 'ptr', 'Potri.010G076900' => 'ptr', 'Pp3c12_9180' => 'ppa', 'Pp3c13_19770' => 'ppa', 'Pp3c14_22950' => 'ppa', 'Pp3c16_12160' => 'ppa', 'Pp3c27_7820' => 'ppa', 'Pp3c2_3490' => 'ppa', 'Pp3c3_23700' => 'ppa', 'Pp3c3_36520' => 'ppa', 'Pp3c4_15250' => 'ppa', 'PRCOL_00007002' => 'pco', 'Prupe.1G030600' => 'ppe', 'Prupe.1G030700' => 'ppe', 'Prupe.6G345200' => 'ppe', 'Prupe.8G230300' => 'ppe', 'Prupe.8G230500' => 'ppe', 'Psat3g059600' => 'psa', 'Psat5g200920' => 'psa', 'Psat6g056440' => 'psa', 'Psat6g057360' => 'psa', 'Psat6g134120' => 'psa', 'Psat6g134160' => 'psa', 'Psat7g008640' => 'psa', 'Psat7g185240' => 'psa', 'PSO017G1330' => 'pso', 'PSO063G6097' => 'pso', 'PSO170G0835' => 'pso', 'PSO170G2499' => 'pso', 'PSO210G5058' => 'pso', 'PSO210G6154' => 'pso', 'PSO585G0031' => 'pso', 'PSO832G0264' => 'pso', 'PSO832G4288' => 'pso', 'QL03p027355' => 'qlo', 'QL03p027430' => 'qlo', 'QL04p081380' => 'qlo', 'QL06p015642' => 'qlo', 'QL06p015650' => 'qlo', 'QL06p015686' => 'qlo', 'QL12p042927' => 'qlo', 'QL93p1863_0035' => 'qlo', 'RcHm_v2.0_Chr3g0450581' => 'rch', 'RcHm_v2.0_Chr4g0390371' => 'rch', 'RcHm_v2.0_Chr4g0390381' => 'rch', 'RcHm_v2.0_Chr4g0390491' => 'rch', 'RcHm_v2.0_Chr4g0390501' => 'rch', 'RcHm_v2.0_Chr6g0289231' => 'rch', 'Rhsim04G0190400' => 'rsi', 'Rhsim04G0190500' => 'rsi', 'Rhsim04G0190600' => 'rsi', 'Rhsim13G0031400' => 'rsi', 'Rhsim13G0165600' => 'rsi', 'RhsimUnG0114600' => 'rsi', 'RhsimUnG0114700' => 'rsi', 'Sabra02G0034800' => 'sbr', 'Sabra02G0035100' => 'sbr', 'Sabra05G0168600' => 'sbr', 'Sabra05G0168800' => 'sbr', 'Sabra08G0123700' => 'sbr', 'Sabra10G0031900' => 'sbr', 'Sabra13G0039000' => 'sbr', 'SalBow2G0782' => 'sbo', 'SalBow2G1403' => 'sbo', 'SalBow4G0074' => 'sbo', 'SalBow4G2635' => 'sbo', 'SalBow5G3010' => 'sbo', 'Sc05g0000870' => 'sci', 'Sc05g0000890' => 'sci', 'Sc13g0005000' => 'sci', 'Sc13g0005030' => 'sci', 'Sc19g0003790' => 'sci', 'Sc19g0003800' => 'sci', 'Sed0003467' => 'sed', 'Sed0009355' => 'sed', 'Sed0009894' => 'sed', 'Sed0011972' => 'sed', 'Sed0021483' => 'sed', 'Sed0021750' => 'sed', 'Sed0026279' => 'sed', 'SEGI_05312' => 'sgi', 'SEGI_10112' => 'sgi', 'SEGI_15835' => 'sgi', 'SEGI_30386' => 'sgi', 'SEGI_34122' => 'sgi', 'SEGI_35063' => 'sgi', 'SGA_v2.0_scaffold101G29794' => 'sas', 'SGA_v2.0_scaffold1G00573' => 'sas', 'SGA_v2.0_scaffold79G25637' => 'sas', 'SGA_v2.0_scaffold88G27283' => 'sas', 'SGA_v2.0_scaffold88G27285' => 'sas', 'SGA_v2.0_scaffold88G27331' => 'sas', 'SHI09937' => 'shi', 'SMO119G0302' => 'smo', 'SMO137G0231' => 'smo', 'SMO367G1151' => 'smo', 'Solyc02g082000.3' => 'sly', 'Solyc06g031670.3' => 'sly', 'Solyc06g053810.3' => 'sly', 'Solyc07g025457.1' => 'sly', 'Solyc08g059740.1' => 'sly', 'Solyc08g059750.3' => 'sly', 'Solyc09g083370.3' => 'sly', 'Solyc12g038950.3' => 'sly', 'Sopen02g026630' => 'spe', 'Sopen06g018930' => 'spe', 'Sopen06g018940' => 'spe', 'Sopen08g009460' => 'spe', 'Sopen09g032290' => 'spe', 'Sp1g03080' => 'spa', 'Sp1g03090' => 'spa', 'Sp1g05480' => 'spa', 'Sp2g07860' => 'spa', 'Sp2g08430' => 'spa', 'Sp2g08440' => 'spa', 'Sp2g26200' => 'spa', 'Sp4g13170' => 'spa', 'Sp6g33840' => 'spa', 'SpUn1204_0010' => 'spa', 'TAR365G0908' => 'tar', 'TAR381G1270' => 'tar', 'TAR381G1651' => 'tar', 'TAR625G1131' => 'tar', 'TAR633G0962' => 'tar', 'TAR633G1729' => 'tar', 'TAR633G1864' => 'tar', 'TAR636G0221' => 'tar', 'TAR636G0314' => 'tar', 'TAR636G3202' => 'tar', 'THA.LOC104800805' => 'tha', 'THA.LOC104801096' => 'tha', 'THA.LOC104801555' => 'tha', 'THA.LOC104808491' => 'tha', 'THA.LOC104808595' => 'tha', 'THA.LOC104815985' => 'tha', 'THA.LOC104822250' => 'tha', 'THA.LOC104826071' => 'tha', 'Thecc.01G265200' => 'tca', 'Thecc.01G265300' => 'tca', 'Thecc.01G265700' => 'tca', 'Thecc.03G109100' => 'tca', 'Thecc.04G245900' => 'tca', 'Thecc.04G246000' => 'tca', 'Thhalv10003334m.g' => 'esa', 'Thhalv10005508m.g' => 'esa', 'Thhalv10005643m.g' => 'esa', 'Thhalv10007316m.g' => 'esa', 'Thhalv10009006m.g' => 'esa', 'Thhalv10009309m.g' => 'esa', 'Thhalv10014917m.g' => 'esa', 'Thhalv10014919m.g' => 'esa', 'Thhalv10015393m.g' => 'esa', 'Thhalv10016515m.g' => 'esa', 'Thhalv10029242m.g' => 'esa', 'TPR.G16654' => 'tpr', 'TPR.G20589' => 'tpr', 'TPR.G23029' => 'tpr', 'TPR.G27731' => 'tpr', 'TPR.G28889' => 'tpr', 'TPR.G28899' => 'tpr', 'TPR.G30846' => 'tpr', 'TPR.G5452' => 'tpr', 'TPR.G5713' => 'tpr', 'TPR.G9046' => 'tpr', 'TPR.G9061' => 'tpr', 'TWI09G1075' => 'twi', 'TWI12G0806' => 'twi', 'TWI18G0108' => 'twi', 'TWI53G1361' => 'twi', 'TWI73G0185' => 'twi', 'TWI73G0427' => 'twi', 'unitig_37.g12001' => 'ugi', 'unitig_747.g21660' => 'ugi', 'unitig_748.g7232' => 'ugi', 'unitig_748.g7315' => 'ugi', 'unitig_85.g27262' => 'ugi', 'unitig_92.g28220' => 'ugi', 'vmacro02632' => 'vma', 'vmacro08410' => 'vma', 'vmacro08411' => 'vma', 'vmacro15407' => 'vma', 'VMungo0251G3619' => 'vmu', 'VMungo0720G1204' => 'vmu', 'VMungo0720G1918' => 'vmu', 'VMungo0720G2387' => 'vmu', 'VMungo0720G2961' => 'vmu', 'VMungo1215G2154' => 'vmu', 'VMungo1383G2411' => 'vmu', 'Zm00001eb051130' => 'zma', 'Zm00001eb116830' => 'zma', 'Zm00001eb116850' => 'zma', 'Zm00001eb151740' => 'zma', 'Zm00001eb292360' => 'zma', 'Zm00001eb301640' => 'zma' ), 'gf_id' => 'HOM05D000856', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000856' ), 'data_identifier' => 'HOM05D000856', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000856', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p00010' => 'bna', 'A03p04160' => 'bna', 'A03p17160' => 'bna', 'A04p23370' => 'bna', 'A05p14860' => 'bna', 'A08p37020' => 'bna', 'A09p08050' => 'bna', 'A09p66800' => 'bna', 'A09p67940' => 'bna', 'A10p02680' => 'bna', 'A10p05320' => 'bna', 'Aa31LG1G20560' => 'aar', 'Aa31LG1G20610' => 'aar', 'Aa31LG1G7810' => 'aar', 'Aa31LG5G3590' => 'aar', 'Aa31LG5G6140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3819' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4683' => 'aag', 'Actinidia04480' => 'ach', 'Actinidia05466' => 'ach', 'Actinidia08445' => 'ach', 'Actinidia21170' => 'ach', 'Actinidia24812' => 'ach', 'Actinidia24951' => 'ach', 'Actinidia40088' => 'ach', 'Ah.02g111660' => 'amhyb', 'Ah.11g048900' => 'amhyb', 'Ah.11g049910' => 'amhyb', 'AL1G13870' => 'aly', 'AL1G13880' => 'aly', 'AL1G16760' => 'aly', 'AL390U10020' => 'aly', 'AL4G25520' => 'aly', 'AL6G19890' => 'aly', 'AL6G19900' => 'aly', 'AL6G19910' => 'aly', 'AL8G40100' => 'aly', 'Aqoxy2G03562' => 'aox', 'Aqoxy5G00316' => 'aox', 'Aqoxy5G00926' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1628KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1H403S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2FU6SJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.882I6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8YRY2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YN1SN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AF70II' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZA8L1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F916KL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHRD8H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KTZ8QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S22EMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8M29T' => 'arhy', 'AT1G04270' => 'ath', 'AT1G04280' => 'ath', 'AT1G06750' => 'ath', 'AT1G33850' => 'ath', 'AT2G30630' => 'ath', 'AT5G09490' => 'ath', 'AT5G09500' => 'ath', 'AT5G09510' => 'ath', 'AT5G43640' => 'ath', 'AT5G63070' => 'ath', 'ATR0605G315' => 'atr', 'Atru.chr11.175' => 'acertr', 'Atru.chr11.653' => 'acertr', 'Atru.chr3.1616' => 'acertr', 'Atru.chr4.2230' => 'acertr', 'Atru.chr4.2232' => 'acertr', 'Atru.chr5.1598' => 'acertr', 'Atru.chr5.1600' => 'acertr', 'Atru.chr5.2188' => 'acertr', 'AUR62008326' => 'cqu', 'AUR62011922' => 'cqu', 'AUR62011924' => 'cqu', 'AUR62021771' => 'cqu', 'AUR62032237' => 'cqu', 'AUR62032240' => 'cqu', 'BcaB01g05572' => 'bca', 'BcaB02g10337' => 'bca', 'BcaB04g19944' => 'bca', 'BcaB05g21548' => 'bca', 'BcaB05g21549' => 'bca', 'BcaB05g23227' => 'bca', 'BcaB06g26256' => 'bca', 'BcaB06g26257' => 'bca', 'BcaB06g28379' => 'bca', 'BcaC02g11159' => 'bca', 'BcaC03g13258' => 'bca', 'BcaC03g13259' => 'bca', 'BcaC05g24456' => 'bca', 'BcaC05g24457' => 'bca', 'BcaC07g36922' => 'bca', 'BcaC07g36923' => 'bca', 'BcaC07g42050' => 'bca', 'BcaC07g42176' => 'bca', 'BcaC07g42195' => 'bca', 'BcaC07g42196' => 'bca', 'BcaNung06674' => 'bca', 'BolC2t06351H' => 'bol', 'BolC2t06352H' => 'bol', 'BolC3t12993H' => 'bol', 'BolC4t23525H' => 'bol', 'BolC4t27475H' => 'bol', 'BolC5t29025H' => 'bol', 'BolC5t29026H' => 'bol', 'BolC8t46898H' => 'bol', 'BolC8t46899H' => 'bol', 'BolC8t52630H' => 'bol', 'BolC8t52765H' => 'bol', 'BolC9t53824H' => 'bol', 'BraA03t09760Z' => 'bra', 'BraA03t10990Z' => 'bra', 'BraA05t20413Z' => 'bra', 'BraA08t35602Z' => 'bra', 'BraA09t36458Z' => 'bra', 'BraA09t42018Z' => 'bra', 'BraA09t42129Z' => 'bra', 'BraA10t42536Z' => 'bra', 'BraA10t42537Z' => 'bra', 'C01p10690' => 'bna', 'C02p03890' => 'bna', 'C02p03900' => 'bna', 'C03p04620' => 'bna', 'C04p19870' => 'bna', 'C04p59670' => 'bna', 'C05p02460' => 'bna', 'C05p02470' => 'bna', 'C08p00980' => 'bna', 'C08p00990' => 'bna', 'C08p51030' => 'bna', 'C08p52360' => 'bna', 'C09p09120' => 'bna', 'CAN.G19.15' => 'can', 'CAN.G251.10' => 'can', 'CAN.G251.9' => 'can', 'CAN.G398.24' => 'can', 'CAN.G410.32' => 'can', 'CAN.G881.2' => 'can', 'CANSAT01G3025' => 'cansat', 'CANSAT78G1211' => 'cansat', 'CANSAT78G1218' => 'cansat', 'CANSAT78G1521' => 'cansat', 'CANSAT78G1670' => 'cansat', 'CARHR003600' => 'chi', 'CARHR003610' => 'chi', 'CARHR006290' => 'chi', 'CARHR006430' => 'chi', 'CARHR124110' => 'chi', 'CARHR203870' => 'chi', 'CARHR203880' => 'chi', 'CARHR203890' => 'chi', 'CARHR276880' => 'chi', 'Carub.0001s0346' => 'cru', 'Carub.0001s0347' => 'cru', 'Carub.0001s0607' => 'cru', 'Carub.0003s2768' => 'cru', 'Carub.0003s2769' => 'cru', 'Carub.0004s1178' => 'cru', 'Carub.0006s0806' => 'cru', 'Carub.0006s0807' => 'cru', 'Carub.0006s0808' => 'cru', 'Carub.0008s0501' => 'cru', 'Carub.0008s2379' => 'cru', 'Ca_08655_v3' => 'car', 'Ca_08922_v3' => 'car', 'Ca_08923_v3' => 'car', 'Ca_09119_v3' => 'car', 'Ca_09703_v3' => 'car', 'Ca_09705_v3' => 'car', 'Ca_09835_v3' => 'car', 'Ca_26403_v3' => 'car', 'Ca_30719_v3' => 'car', 'CBR_g17958' => 'cbr', 'CBR_g40516' => 'cbr', 'Cc00_g05350' => 'ccan', 'Cc01_g18690' => 'ccan', 'Cc03_g04830' => 'ccan', 'Cc03_g04850' => 'ccan', 'CDE02G4469' => 'cde', 'CDE06G0883' => 'cde', 'CDE06G1295' => 'cde', 'CDE06G1390' => 'cde', 'CDE07G0584' => 'cde', 'CDE07G1084' => 'cde', 'CDE08G1259' => 'cde', 'Cfa002341' => 'cfa', 'Cfa024337' => 'cfa', 'Ciclev10004749m.g' => 'ccl', 'Ciclev10006127m.g' => 'ccl', 'Ciclev10019720m.g' => 'ccl', 'Ciclev10022652m.g' => 'ccl', 'CiPaw.01G190400' => 'cil', 'CiPaw.01G190500' => 'cil', 'CiPaw.02G116400' => 'cil', 'CiPaw.02G116500' => 'cil', 'CiPaw.04G183000' => 'cil', 'CiPaw.04G183300' => 'cil', 'ClCG05G004610' => 'cla', 'ClCG05G004620' => 'cla', 'ClCG06G006730' => 'cla', 'ClCG06G006740' => 'cla', 'ClCG11G003690' => 'cla', 'COL.COLO4_08276' => 'col', 'COL.COLO4_08277' => 'col', 'COL.COLO4_15787' => 'col', 'COL.COLO4_15789' => 'col', 'Cpa.g.c44815' => 'cpa', 'Cpa.g.sc52.144' => 'cpa', 'Cpa.g.sc58.46' => 'cpa', 'Cpa.g.sc58.47' => 'cpa', 'Cre08.g360900' => 'cre', 'CsaV3_2G013030' => 'csa', 'CsaV3_2G013050' => 'csa', 'CsaV3_2G015620' => 'csa', 'CsaV3_3G012590' => 'csa', 'CsaV3_3G012600' => 'csa', 'CSS0001641' => 'camsi', 'CSS0008310' => 'camsi', 'CSS0013011' => 'camsi', 'CSS0017147' => 'camsi', 'CSS0022970' => 'camsi', 'CSS0025655' => 'camsi', 'CSS0028665' => 'camsi', 'CSS0029117' => 'camsi', 'CSS0032024' => 'camsi', 'CSS0039681' => 'camsi', 'CSS0046516' => 'camsi', 'CSS0050307' => 'camsi', 'DCAR_005871' => 'dca', 'DCAR_007342' => 'dca', 'DCAR_024228' => 'dca', 'DCAR_027277' => 'dca', 'DCAR_030718' => 'dca', 'Dinv20287' => 'din', 'Dinv22461' => 'din', 'Dinv22464' => 'din', 'Dinv29912' => 'din', 'Dinv29913' => 'din', 'Dinv34580' => 'din', 'Dinv34582' => 'din', 'Dinv44632' => 'din', 'Duzib052G0266' => 'dzi', 'Duzib133G0907' => 'dzi', 'Duzib133G1034' => 'dzi', 'Duzib138G0207' => 'dzi', 'Duzib138G0491' => 'dzi', 'Duzib151G0812' => 'dzi', 'Duzib151G1166' => 'dzi', 'Duzib168G0192' => 'dzi', 'Duzib211G0077' => 'dzi', 'Duzib212G0429' => 'dzi', 'Duzib212G0472' => 'dzi', 'ECA233G2617' => 'eca', 'ECA236G4188' => 'eca', 'ECA240G0936' => 'eca', 'ECA240G1129' => 'eca', 'ECA247G0623' => 'eca', 'EL10Ac5g10451' => 'bvu', 'EL10Ac5g10453' => 'bvu', 'EL10Ac5g10894' => 'bvu', 'Eucgr.H00192' => 'egr', 'Eucgr.H00193' => 'egr', 'Eucgr.H00194' => 'egr', 'Eucgr.J01562' => 'egr', 'Eucgr.K03301' => 'egr', 'FAN02G0632' => 'fan', 'FAN05G5378' => 'fan', 'FAN09G3247' => 'fan', 'FAN12G0435' => 'fan', 'FAN12G2426' => 'fan', 'FAN14G1707' => 'fan', 'FAN14G4725' => 'fan', 'FAN15G2071' => 'fan', 'FAN17G3065' => 'fan', 'FAN19G1376' => 'fan', 'FAN20G0354' => 'fan', 'FAN20G2429' => 'fan', 'FAN20G2658' => 'fan', 'FAN24G2343' => 'fan', 'FAN27G2362' => 'fan', 'FAN28G1765' => 'fan', 'FvH4_1g16020' => 'fve', 'FvH4_2g04890' => 'fve', 'FvH4_2g22270' => 'fve', 'FvH4_4g02630' => 'fve', 'FvH4_4g02640' => 'fve', 'FvH4_6g02650' => 'fve', 'Glyma.02G140600' => 'gma', 'Glyma.03G159900' => 'gma', 'Glyma.05G234800' => 'gma', 'Glyma.07G269600' => 'gma', 'Glyma.08G042300' => 'gma', 'Glyma.10G033500' => 'gma', 'Glyma.10G185200' => 'gma', 'Glyma.17G004300' => 'gma', 'Glyma.19G161900' => 'gma', 'Glyma.20G205100' => 'gma', 'Glyma.20G205200' => 'gma', 'Gohir.A01G139101' => 'ghi', 'Gohir.A02G035600' => 'ghi', 'Gohir.A02G117901' => 'ghi', 'Gohir.A07G210100' => 'ghi', 'Gohir.A07G210200' => 'ghi', 'Gohir.A08G061100' => 'ghi', 'Gohir.A09G223000' => 'ghi', 'Gohir.A09G223100' => 'ghi', 'Gohir.A10G113900' => 'ghi', 'Gohir.A10G114000' => 'ghi', 'Gohir.D02G042300' => 'ghi', 'Gohir.D07G216100' => 'ghi', 'Gohir.D07G216200' => 'ghi', 'Gohir.D08G070400' => 'ghi', 'Gohir.D09G225000' => 'ghi', 'Gohir.D09G225100' => 'ghi', 'Gohir.D10G152300' => 'ghi', 'Gohir.D10G153200' => 'ghi', 'Gohir.D11G133701' => 'ghi', 'Gorai.004G074100' => 'gra', 'Gorai.005G046800' => 'gra', 'Gorai.006G246500' => 'gra', 'Gorai.006G246600' => 'gra', 'Gorai.007G142900' => 'gra', 'Gorai.011G171000' => 'gra', 'Gorai.011G171100' => 'gra', 'Gorai.013G104300' => 'gra', 'Gorai.013G104400' => 'gra', 'GSVIVG01000754001' => 'vvi', 'GSVIVG01000756001' => 'vvi', 'GSVIVG01010903001' => 'vvi', 'GSVIVG01017623001' => 'vvi', 'GSVIVG01018113001' => 'vvi', 'GSVIVG01018116001' => 'vvi', 'GSVIVG01018118001' => 'vvi', 'HanXRQChr03g0076211' => 'han', 'HanXRQChr03g0092431' => 'han', 'HanXRQChr03g0092441' => 'han', 'HanXRQChr03g0092591' => 'han', 'HanXRQChr03g0092671' => 'han', 'HanXRQChr03g0092681' => 'han', 'HanXRQChr03g0092691' => 'han', 'HanXRQChr03g0092701' => 'han', 'HanXRQChr03g0092721' => 'han', 'HanXRQChr03g0092731' => 'han', 'HanXRQChr04g0113681' => 'han', 'HanXRQChr10g0281371' => 'han', 'HanXRQChr11g0337141' => 'han', 'HanXRQChr13g0424521' => 'han', 'HanXRQChr13g0424531' => 'han', 'HanXRQChr13g0424541' => 'han', 'HanXRQChr16g0498221' => 'han', 'Haze_04377' => 'cav', 'Haze_11298' => 'cav', 'Haze_24547' => 'cav', 'Haze_24550' => 'cav', 'Haze_26587' => 'cav', 'Hma1.2p1_0650F.1_g195410' => 'hma', 'Hma1.2p1_0893F.1_g233470' => 'hma', 'HPP92_006508' => 'vpl', 'HPP92_024780' => 'vpl', 'Hund02688' => 'sun', 'Hund09380' => 'sun', 'Hund09381' => 'sun', 'Hund09832' => 'sun', 'Hund09833' => 'sun', 'Hund11351' => 'sun', 'Hund11513' => 'sun', 'Lalb_Chr06g0162591' => 'lal', 'Lalb_Chr06g0162601' => 'lal', 'Lalb_Chr06g0169321' => 'lal', 'Lalb_Chr09g0330951' => 'lal', 'Lalb_Chr16g0387631' => 'lal', 'Lalb_Chr21g0306241' => 'lal', 'Lalb_Chr25g0290051' => 'lal', 'Lalb_Chr25g0290061' => 'lal', 'Lalb_Chr25g0290071' => 'lal', 'Lj1g0003876' => 'lja', 'Lj1P1207T36' => 'lonja', 'Lj2C1156G12' => 'lonja', 'Lj3A793G39' => 'lonja', 'Lj3C580G2' => 'lonja', 'Lj3C780G2' => 'lonja', 'Lj3C780T4' => 'lonja', 'Lj3C793G9' => 'lonja', 'Lj4g0012960' => 'lja', 'Lj5g0021252' => 'lja', 'Lj5g0021484' => 'lja', 'Lj5g0024528' => 'lja', 'Lj6A399T12' => 'lonja', 'Lj6A656G65' => 'lonja', 'Lsat_1_v5_gn_3_125500' => 'lsa', 'Lsat_1_v5_gn_3_125540' => 'lsa', 'Lsat_1_v5_gn_5_72701' => 'lsa', 'Lsat_1_v5_gn_8_91560' => 'lsa', 'Lsat_1_v5_gn_9_9640' => 'lsa', 'Manes.01G200600' => 'mes', 'Manes.01G200700' => 'mes', 'Manes.03G168900' => 'mes', 'Manes.03G169000' => 'mes', 'Manes.05G085801' => 'mes', 'Manes.05G086200' => 'mes', 'Manes.15G036700' => 'mes', 'Manes.15G036900' => 'mes', 'Mapoly0004s0172' => 'mpo', 'Mapoly0023s0001' => 'mpo', 'Mapoly0142s0012' => 'mpo', 'MBI01_g32854_MAGBIO' => 'mbi', 'MBI11_g24427_MAGBIO' => 'mbi', 'MBI11_g47319_MAGBIO' => 'mbi', 'MCO01G433' => 'mco', 'MD00G1187800' => 'mdo', 'MD04G1226500' => 'mdo', 'MD05G1203900' => 'mdo', 'MD10G1191100' => 'mdo', 'MD12G1243500' => 'mdo', 'MD13G1207000' => 'mdo', 'MD13G1207100' => 'mdo', 'MD16G1208600' => 'mdo', 'Medtr1g050352' => 'mtr', 'Medtr1g070385' => 'mtr', 'Medtr1g070450' => 'mtr', 'Medtr1g075200' => 'mtr', 'Medtr1g075250' => 'mtr', 'Medtr1g075260' => 'mtr', 'Medtr1g475250' => 'mtr', 'Medtr4g075450' => 'mtr', 'Medtr7g096300' => 'mtr', 'Medtr8g105110' => 'mtr', 'MELO3C006470.2' => 'cme', 'MELO3C006471.2' => 'cme', 'MELO3C020772.2' => 'cme', 'MELO3C026780.2' => 'cme', 'MELO3C026781.2' => 'cme', 'Migut.D00390' => 'egut', 'Migut.G00435' => 'egut', 'Migut.G00436' => 'egut', 'Migut.G00718' => 'egut', 'MSTRG.21891' => 'ama', 'MSTRG.26910' => 'ama', 'MSTRG.4099' => 'ama', 'MSTRG.9925' => 'ama', 'Nitab4.5_0000165g0010' => 'nta', 'Nitab4.5_0000209g0180' => 'nta', 'Nitab4.5_0000244g0440' => 'nta', 'Nitab4.5_0000525g0220' => 'nta', 'Nitab4.5_0001597g0020' => 'nta', 'Nitab4.5_0001878g0040' => 'nta', 'Nitab4.5_0001878g0060' => 'nta', 'Nitab4.5_0002838g0100' => 'nta', 'Nitab4.5_0002838g0120' => 'nta', 'Nitab4.5_0004798g0030' => 'nta', 'Nitab4.5_0005420g0010' => 'nta', 'Nitab4.5_0005507g0010' => 'nta', 'Nitab4.5_0005574g0020' => 'nta', 'Nitab4.5_0005838g0010' => 'nta', 'Nitab4.5_0010580g0020' => 'nta', 'Nn1g02599' => 'nnu', 'Nn1g02608' => 'nnu', 'Nn3g17742' => 'nnu', 'Nn3g19534' => 'nnu', 'Nn3g19535' => 'nnu', 'Oeu008790.1' => 'oeu', 'Oeu008792.1' => 'oeu', 'Oeu032590.1' => 'oeu', 'Oeu035349.1' => 'oeu', 'Oeu049791.1' => 'oeu', 'Os01g0774500' => 'osa', 'Os03g0628800' => 'osa', 'Os03g0798600' => 'osa', 'Os05g0508800' => 'osa', 'Peaxi162Scf00036g02018' => 'pax', 'Peaxi162Scf00578g00032' => 'pax', 'Peaxi162Scf00578g00317' => 'pax', 'Peaxi162Scf00785g00114' => 'pax', 'Peaxi162Scf00813g00119' => 'pax', 'Peaxi162Scf00906g00227' => 'pax', 'PGR004G0875' => 'pgr', 'PGR004G2424' => 'pgr', 'PGR031G1239' => 'pgr', 'PGR031G2474' => 'pgr', 'PGR044G0423' => 'pgr', 'PGSC0003DMG400001128' => 'stu', 'PGSC0003DMG400007336' => 'stu', 'PGSC0003DMG400016318' => 'stu', 'PGSC0003DMG400016319' => 'stu', 'PGSC0003DMG400018074' => 'stu', 'Phvul.001G157700' => 'pvu', 'Phvul.002G148550' => 'pvu', 'Phvul.002G320200' => 'pvu', 'Phvul.003G089200' => 'pvu', 'Phvul.007G126000' => 'pvu', 'Phvul.007G126100' => 'pvu', 'Phvul.007G178000' => 'pvu', 'Phvul.007G178200' => 'pvu', 'Potri.002G043000' => 'ptr', 'Potri.002G043200' => 'ptr', 'Potri.003G123750' => 'ptr', 'Potri.005G055401' => 'ptr', 'Potri.005G219700' => 'ptr', 'Potri.005G220000' => 'ptr', 'Potri.008G161901' => 'ptr', 'Potri.008G162000' => 'ptr', 'Potri.008G162400' => 'ptr', 'Potri.010G076900' => 'ptr', 'Pp3c12_9180' => 'ppa', 'Pp3c13_19770' => 'ppa', 'Pp3c14_22950' => 'ppa', 'Pp3c16_12160' => 'ppa', 'Pp3c27_7820' => 'ppa', 'Pp3c2_3490' => 'ppa', 'Pp3c3_23700' => 'ppa', 'Pp3c3_36520' => 'ppa', 'Pp3c4_15250' => 'ppa', 'PRCOL_00007002' => 'pco', 'Prupe.1G030600' => 'ppe', 'Prupe.1G030700' => 'ppe', 'Prupe.6G345200' => 'ppe', 'Prupe.8G230300' => 'ppe', 'Prupe.8G230500' => 'ppe', 'Psat3g059600' => 'psa', 'Psat5g200920' => 'psa', 'Psat6g056440' => 'psa', 'Psat6g057360' => 'psa', 'Psat6g134120' => 'psa', 'Psat6g134160' => 'psa', 'Psat7g008640' => 'psa', 'Psat7g185240' => 'psa', 'PSO017G1330' => 'pso', 'PSO063G6097' => 'pso', 'PSO170G0835' => 'pso', 'PSO170G2499' => 'pso', 'PSO210G5058' => 'pso', 'PSO210G6154' => 'pso', 'PSO585G0031' => 'pso', 'PSO832G0264' => 'pso', 'PSO832G4288' => 'pso', 'QL03p027355' => 'qlo', 'QL03p027430' => 'qlo', 'QL04p081380' => 'qlo', 'QL06p015642' => 'qlo', 'QL06p015650' => 'qlo', 'QL06p015686' => 'qlo', 'QL12p042927' => 'qlo', 'QL93p1863_0035' => 'qlo', 'RcHm_v2.0_Chr3g0450581' => 'rch', 'RcHm_v2.0_Chr4g0390371' => 'rch', 'RcHm_v2.0_Chr4g0390381' => 'rch', 'RcHm_v2.0_Chr4g0390491' => 'rch', 'RcHm_v2.0_Chr4g0390501' => 'rch', 'RcHm_v2.0_Chr6g0289231' => 'rch', 'Rhsim04G0190400' => 'rsi', 'Rhsim04G0190500' => 'rsi', 'Rhsim04G0190600' => 'rsi', 'Rhsim13G0031400' => 'rsi', 'Rhsim13G0165600' => 'rsi', 'RhsimUnG0114600' => 'rsi', 'RhsimUnG0114700' => 'rsi', 'Sabra02G0034800' => 'sbr', 'Sabra02G0035100' => 'sbr', 'Sabra05G0168600' => 'sbr', 'Sabra05G0168800' => 'sbr', 'Sabra08G0123700' => 'sbr', 'Sabra10G0031900' => 'sbr', 'Sabra13G0039000' => 'sbr', 'SalBow2G0782' => 'sbo', 'SalBow2G1403' => 'sbo', 'SalBow4G0074' => 'sbo', 'SalBow4G2635' => 'sbo', 'SalBow5G3010' => 'sbo', 'Sc05g0000870' => 'sci', 'Sc05g0000890' => 'sci', 'Sc13g0005000' => 'sci', 'Sc13g0005030' => 'sci', 'Sc19g0003790' => 'sci', 'Sc19g0003800' => 'sci', 'Sed0003467' => 'sed', 'Sed0009355' => 'sed', 'Sed0009894' => 'sed', 'Sed0011972' => 'sed', 'Sed0021483' => 'sed', 'Sed0021750' => 'sed', 'Sed0026279' => 'sed', 'SEGI_05312' => 'sgi', 'SEGI_10112' => 'sgi', 'SEGI_15835' => 'sgi', 'SEGI_30386' => 'sgi', 'SEGI_34122' => 'sgi', 'SEGI_35063' => 'sgi', 'SGA_v2.0_scaffold101G29794' => 'sas', 'SGA_v2.0_scaffold1G00573' => 'sas', 'SGA_v2.0_scaffold79G25637' => 'sas', 'SGA_v2.0_scaffold88G27283' => 'sas', 'SGA_v2.0_scaffold88G27285' => 'sas', 'SGA_v2.0_scaffold88G27331' => 'sas', 'SHI09937' => 'shi', 'SMO119G0302' => 'smo', 'SMO137G0231' => 'smo', 'SMO367G1151' => 'smo', 'Solyc02g082000.3' => 'sly', 'Solyc06g031670.3' => 'sly', 'Solyc06g053810.3' => 'sly', 'Solyc07g025457.1' => 'sly', 'Solyc08g059740.1' => 'sly', 'Solyc08g059750.3' => 'sly', 'Solyc09g083370.3' => 'sly', 'Solyc12g038950.3' => 'sly', 'Sopen02g026630' => 'spe', 'Sopen06g018930' => 'spe', 'Sopen06g018940' => 'spe', 'Sopen08g009460' => 'spe', 'Sopen09g032290' => 'spe', 'Sp1g03080' => 'spa', 'Sp1g03090' => 'spa', 'Sp1g05480' => 'spa', 'Sp2g07860' => 'spa', 'Sp2g08430' => 'spa', 'Sp2g08440' => 'spa', 'Sp2g26200' => 'spa', 'Sp4g13170' => 'spa', 'Sp6g33840' => 'spa', 'SpUn1204_0010' => 'spa', 'TAR365G0908' => 'tar', 'TAR381G1270' => 'tar', 'TAR381G1651' => 'tar', 'TAR625G1131' => 'tar', 'TAR633G0962' => 'tar', 'TAR633G1729' => 'tar', 'TAR633G1864' => 'tar', 'TAR636G0221' => 'tar', 'TAR636G0314' => 'tar', 'TAR636G3202' => 'tar', 'THA.LOC104800805' => 'tha', 'THA.LOC104801096' => 'tha', 'THA.LOC104801555' => 'tha', 'THA.LOC104808491' => 'tha', 'THA.LOC104808595' => 'tha', 'THA.LOC104815985' => 'tha', 'THA.LOC104822250' => 'tha', 'THA.LOC104826071' => 'tha', 'Thecc.01G265200' => 'tca', 'Thecc.01G265300' => 'tca', 'Thecc.01G265700' => 'tca', 'Thecc.03G109100' => 'tca', 'Thecc.04G245900' => 'tca', 'Thecc.04G246000' => 'tca', 'Thhalv10003334m.g' => 'esa', 'Thhalv10005508m.g' => 'esa', 'Thhalv10005643m.g' => 'esa', 'Thhalv10007316m.g' => 'esa', 'Thhalv10009006m.g' => 'esa', 'Thhalv10009309m.g' => 'esa', 'Thhalv10014917m.g' => 'esa', 'Thhalv10014919m.g' => 'esa', 'Thhalv10015393m.g' => 'esa', 'Thhalv10016515m.g' => 'esa', 'Thhalv10029242m.g' => 'esa', 'TPR.G16654' => 'tpr', 'TPR.G20589' => 'tpr', 'TPR.G23029' => 'tpr', 'TPR.G27731' => 'tpr', 'TPR.G28889' => 'tpr', 'TPR.G28899' => 'tpr', 'TPR.G30846' => 'tpr', 'TPR.G5452' => 'tpr', 'TPR.G5713' => 'tpr', 'TPR.G9046' => 'tpr', 'TPR.G9061' => 'tpr', 'TWI09G1075' => 'twi', 'TWI12G0806' => 'twi', 'TWI18G0108' => 'twi', 'TWI53G1361' => 'twi', 'TWI73G0185' => 'twi', 'TWI73G0427' => 'twi', 'unitig_37.g12001' => 'ugi', 'unitig_747.g21660' => 'ugi', 'unitig_748.g7232' => 'ugi', 'unitig_748.g7315' => 'ugi', 'unitig_85.g27262' => 'ugi', 'unitig_92.g28220' => 'ugi', 'vmacro02632' => 'vma', 'vmacro08410' => 'vma', 'vmacro08411' => 'vma', 'vmacro15407' => 'vma', 'VMungo0251G3619' => 'vmu', 'VMungo0720G1204' => 'vmu', 'VMungo0720G1918' => 'vmu', 'VMungo0720G2387' => 'vmu', 'VMungo0720G2961' => 'vmu', 'VMungo1215G2154' => 'vmu', 'VMungo1383G2411' => 'vmu', 'Zm00001eb051130' => 'zma', 'Zm00001eb116830' => 'zma', 'Zm00001eb116850' => 'zma', 'Zm00001eb151740' => 'zma', 'Zm00001eb292360' => 'zma', 'Zm00001eb301640' => 'zma' ) $gf_id = 'HOM05D000856' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000856' ) $data_identifier = 'HOM05D000856' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 13, 'ath' => (int) 10, 'atr' => (int) 1, 'acertr' => (int) 8, 'cqu' => (int) 6, 'bca' => (int) 21, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 11, 'car' => (int) 9, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 8, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 5, 'fan' => (int) 16, 'fve' => (int) 6, 'gma' => (int) 11, 'ghi' => (int) 19, 'gra' => (int) 9, 'vvi' => (int) 7, 'han' => (int) 17, 'cav' => (int) 5, 'hma' => (int) 2, 'vpl' => (int) 2, 'sun' => (int) 7, 'lal' => (int) 9, 'lja' => (int) 5, 'lonja' => (int) 9, 'lsa' => (int) 5, 'mes' => (int) 8, 'mpo' => (int) 3, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 10, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 15, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 9, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 9, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 6, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 5, 'spa' => (int) 10, 'tar' => (int) 10, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 11, 'tpr' => (int) 11, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 4, 'vmu' => (int) 7, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb301640' $species_info = array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ) $local_species = 'pgr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000856', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p00010' => 'bna', 'A03p04160' => 'bna', 'A03p17160' => 'bna', 'A04p23370' => 'bna', 'A05p14860' => 'bna', 'A08p37020' => 'bna', 'A09p08050' => 'bna', 'A09p66800' => 'bna', 'A09p67940' => 'bna', 'A10p02680' => 'bna', 'A10p05320' => 'bna', 'Aa31LG1G20560' => 'aar', 'Aa31LG1G20610' => 'aar', 'Aa31LG1G7810' => 'aar', 'Aa31LG5G3590' => 'aar', 'Aa31LG5G6140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3819' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4683' => 'aag', 'Actinidia04480' => 'ach', 'Actinidia05466' => 'ach', 'Actinidia08445' => 'ach', 'Actinidia21170' => 'ach', 'Actinidia24812' => 'ach', 'Actinidia24951' => 'ach', 'Actinidia40088' => 'ach', 'Ah.02g111660' => 'amhyb', 'Ah.11g048900' => 'amhyb', 'Ah.11g049910' => 'amhyb', 'AL1G13870' => 'aly', 'AL1G13880' => 'aly', 'AL1G16760' => 'aly', 'AL390U10020' => 'aly', 'AL4G25520' => 'aly', 'AL6G19890' => 'aly', 'AL6G19900' => 'aly', 'AL6G19910' => 'aly', 'AL8G40100' => 'aly', 'Aqoxy2G03562' => 'aox', 'Aqoxy5G00316' => 'aox', 'Aqoxy5G00926' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1628KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1H403S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2FU6SJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.882I6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8YRY2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YN1SN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AF70II' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZA8L1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F916KL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHRD8H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KTZ8QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S22EMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8M29T' => 'arhy', 'AT1G04270' => 'ath', 'AT1G04280' => 'ath', 'AT1G06750' => 'ath', 'AT1G33850' => 'ath', 'AT2G30630' => 'ath', 'AT5G09490' => 'ath', 'AT5G09500' => 'ath', 'AT5G09510' => 'ath', 'AT5G43640' => 'ath', 'AT5G63070' => 'ath', 'ATR0605G315' => 'atr', 'Atru.chr11.175' => 'acertr', 'Atru.chr11.653' => 'acertr', 'Atru.chr3.1616' => 'acertr', 'Atru.chr4.2230' => 'acertr', 'Atru.chr4.2232' => 'acertr', 'Atru.chr5.1598' => 'acertr', 'Atru.chr5.1600' => 'acertr', 'Atru.chr5.2188' => 'acertr', 'AUR62008326' => 'cqu', 'AUR62011922' => 'cqu', 'AUR62011924' => 'cqu', 'AUR62021771' => 'cqu', 'AUR62032237' => 'cqu', 'AUR62032240' => 'cqu', 'BcaB01g05572' => 'bca', 'BcaB02g10337' => 'bca', 'BcaB04g19944' => 'bca', 'BcaB05g21548' => 'bca', 'BcaB05g21549' => 'bca', 'BcaB05g23227' => 'bca', 'BcaB06g26256' => 'bca', 'BcaB06g26257' => 'bca', 'BcaB06g28379' => 'bca', 'BcaC02g11159' => 'bca', 'BcaC03g13258' => 'bca', 'BcaC03g13259' => 'bca', 'BcaC05g24456' => 'bca', 'BcaC05g24457' => 'bca', 'BcaC07g36922' => 'bca', 'BcaC07g36923' => 'bca', 'BcaC07g42050' => 'bca', 'BcaC07g42176' => 'bca', 'BcaC07g42195' => 'bca', 'BcaC07g42196' => 'bca', 'BcaNung06674' => 'bca', 'BolC2t06351H' => 'bol', 'BolC2t06352H' => 'bol', 'BolC3t12993H' => 'bol', 'BolC4t23525H' => 'bol', 'BolC4t27475H' => 'bol', 'BolC5t29025H' => 'bol', 'BolC5t29026H' => 'bol', 'BolC8t46898H' => 'bol', 'BolC8t46899H' => 'bol', 'BolC8t52630H' => 'bol', 'BolC8t52765H' => 'bol', 'BolC9t53824H' => 'bol', 'BraA03t09760Z' => 'bra', 'BraA03t10990Z' => 'bra', 'BraA05t20413Z' => 'bra', 'BraA08t35602Z' => 'bra', 'BraA09t36458Z' => 'bra', 'BraA09t42018Z' => 'bra', 'BraA09t42129Z' => 'bra', 'BraA10t42536Z' => 'bra', 'BraA10t42537Z' => 'bra', 'C01p10690' => 'bna', 'C02p03890' => 'bna', 'C02p03900' => 'bna', 'C03p04620' => 'bna', 'C04p19870' => 'bna', 'C04p59670' => 'bna', 'C05p02460' => 'bna', 'C05p02470' => 'bna', 'C08p00980' => 'bna', 'C08p00990' => 'bna', 'C08p51030' => 'bna', 'C08p52360' => 'bna', 'C09p09120' => 'bna', 'CAN.G19.15' => 'can', 'CAN.G251.10' => 'can', 'CAN.G251.9' => 'can', 'CAN.G398.24' => 'can', 'CAN.G410.32' => 'can', 'CAN.G881.2' => 'can', 'CANSAT01G3025' => 'cansat', 'CANSAT78G1211' => 'cansat', 'CANSAT78G1218' => 'cansat', 'CANSAT78G1521' => 'cansat', 'CANSAT78G1670' => 'cansat', 'CARHR003600' => 'chi', 'CARHR003610' => 'chi', 'CARHR006290' => 'chi', 'CARHR006430' => 'chi', 'CARHR124110' => 'chi', 'CARHR203870' => 'chi', 'CARHR203880' => 'chi', 'CARHR203890' => 'chi', 'CARHR276880' => 'chi', 'Carub.0001s0346' => 'cru', 'Carub.0001s0347' => 'cru', 'Carub.0001s0607' => 'cru', 'Carub.0003s2768' => 'cru', 'Carub.0003s2769' => 'cru', 'Carub.0004s1178' => 'cru', 'Carub.0006s0806' => 'cru', 'Carub.0006s0807' => 'cru', 'Carub.0006s0808' => 'cru', 'Carub.0008s0501' => 'cru', 'Carub.0008s2379' => 'cru', 'Ca_08655_v3' => 'car', 'Ca_08922_v3' => 'car', 'Ca_08923_v3' => 'car', 'Ca_09119_v3' => 'car', 'Ca_09703_v3' => 'car', 'Ca_09705_v3' => 'car', 'Ca_09835_v3' => 'car', 'Ca_26403_v3' => 'car', 'Ca_30719_v3' => 'car', 'CBR_g17958' => 'cbr', 'CBR_g40516' => 'cbr', 'Cc00_g05350' => 'ccan', 'Cc01_g18690' => 'ccan', 'Cc03_g04830' => 'ccan', 'Cc03_g04850' => 'ccan', 'CDE02G4469' => 'cde', 'CDE06G0883' => 'cde', 'CDE06G1295' => 'cde', 'CDE06G1390' => 'cde', 'CDE07G0584' => 'cde', 'CDE07G1084' => 'cde', 'CDE08G1259' => 'cde', 'Cfa002341' => 'cfa', 'Cfa024337' => 'cfa', 'Ciclev10004749m.g' => 'ccl', 'Ciclev10006127m.g' => 'ccl', 'Ciclev10019720m.g' => 'ccl', 'Ciclev10022652m.g' => 'ccl', 'CiPaw.01G190400' => 'cil', 'CiPaw.01G190500' => 'cil', 'CiPaw.02G116400' => 'cil', 'CiPaw.02G116500' => 'cil', 'CiPaw.04G183000' => 'cil', 'CiPaw.04G183300' => 'cil', 'ClCG05G004610' => 'cla', 'ClCG05G004620' => 'cla', 'ClCG06G006730' => 'cla', 'ClCG06G006740' => 'cla', 'ClCG11G003690' => 'cla', 'COL.COLO4_08276' => 'col', 'COL.COLO4_08277' => 'col', 'COL.COLO4_15787' => 'col', 'COL.COLO4_15789' => 'col', 'Cpa.g.c44815' => 'cpa', 'Cpa.g.sc52.144' => 'cpa', 'Cpa.g.sc58.46' => 'cpa', 'Cpa.g.sc58.47' => 'cpa', 'Cre08.g360900' => 'cre', 'CsaV3_2G013030' => 'csa', 'CsaV3_2G013050' => 'csa', 'CsaV3_2G015620' => 'csa', 'CsaV3_3G012590' => 'csa', 'CsaV3_3G012600' => 'csa', 'CSS0001641' => 'camsi', 'CSS0008310' => 'camsi', 'CSS0013011' => 'camsi', 'CSS0017147' => 'camsi', 'CSS0022970' => 'camsi', 'CSS0025655' => 'camsi', 'CSS0028665' => 'camsi', 'CSS0029117' => 'camsi', 'CSS0032024' => 'camsi', 'CSS0039681' => 'camsi', 'CSS0046516' => 'camsi', 'CSS0050307' => 'camsi', 'DCAR_005871' => 'dca', 'DCAR_007342' => 'dca', 'DCAR_024228' => 'dca', 'DCAR_027277' => 'dca', 'DCAR_030718' => 'dca', 'Dinv20287' => 'din', 'Dinv22461' => 'din', 'Dinv22464' => 'din', 'Dinv29912' => 'din', 'Dinv29913' => 'din', 'Dinv34580' => 'din', 'Dinv34582' => 'din', 'Dinv44632' => 'din', 'Duzib052G0266' => 'dzi', 'Duzib133G0907' => 'dzi', 'Duzib133G1034' => 'dzi', 'Duzib138G0207' => 'dzi', 'Duzib138G0491' => 'dzi', 'Duzib151G0812' => 'dzi', 'Duzib151G1166' => 'dzi', 'Duzib168G0192' => 'dzi', 'Duzib211G0077' => 'dzi', 'Duzib212G0429' => 'dzi', 'Duzib212G0472' => 'dzi', 'ECA233G2617' => 'eca', 'ECA236G4188' => 'eca', 'ECA240G0936' => 'eca', 'ECA240G1129' => 'eca', 'ECA247G0623' => 'eca', 'EL10Ac5g10451' => 'bvu', 'EL10Ac5g10453' => 'bvu', 'EL10Ac5g10894' => 'bvu', 'Eucgr.H00192' => 'egr', 'Eucgr.H00193' => 'egr', 'Eucgr.H00194' => 'egr', 'Eucgr.J01562' => 'egr', 'Eucgr.K03301' => 'egr', 'FAN02G0632' => 'fan', 'FAN05G5378' => 'fan', 'FAN09G3247' => 'fan', 'FAN12G0435' => 'fan', 'FAN12G2426' => 'fan', 'FAN14G1707' => 'fan', 'FAN14G4725' => 'fan', 'FAN15G2071' => 'fan', 'FAN17G3065' => 'fan', 'FAN19G1376' => 'fan', 'FAN20G0354' => 'fan', 'FAN20G2429' => 'fan', 'FAN20G2658' => 'fan', 'FAN24G2343' => 'fan', 'FAN27G2362' => 'fan', 'FAN28G1765' => 'fan', 'FvH4_1g16020' => 'fve', 'FvH4_2g04890' => 'fve', 'FvH4_2g22270' => 'fve', 'FvH4_4g02630' => 'fve', 'FvH4_4g02640' => 'fve', 'FvH4_6g02650' => 'fve', 'Glyma.02G140600' => 'gma', 'Glyma.03G159900' => 'gma', 'Glyma.05G234800' => 'gma', 'Glyma.07G269600' => 'gma', 'Glyma.08G042300' => 'gma', 'Glyma.10G033500' => 'gma', 'Glyma.10G185200' => 'gma', 'Glyma.17G004300' => 'gma', 'Glyma.19G161900' => 'gma', 'Glyma.20G205100' => 'gma', 'Glyma.20G205200' => 'gma', 'Gohir.A01G139101' => 'ghi', 'Gohir.A02G035600' => 'ghi', 'Gohir.A02G117901' => 'ghi', 'Gohir.A07G210100' => 'ghi', 'Gohir.A07G210200' => 'ghi', 'Gohir.A08G061100' => 'ghi', 'Gohir.A09G223000' => 'ghi', 'Gohir.A09G223100' => 'ghi', 'Gohir.A10G113900' => 'ghi', 'Gohir.A10G114000' => 'ghi', 'Gohir.D02G042300' => 'ghi', 'Gohir.D07G216100' => 'ghi', 'Gohir.D07G216200' => 'ghi', 'Gohir.D08G070400' => 'ghi', 'Gohir.D09G225000' => 'ghi', 'Gohir.D09G225100' => 'ghi', 'Gohir.D10G152300' => 'ghi', 'Gohir.D10G153200' => 'ghi', 'Gohir.D11G133701' => 'ghi', 'Gorai.004G074100' => 'gra', 'Gorai.005G046800' => 'gra', 'Gorai.006G246500' => 'gra', 'Gorai.006G246600' => 'gra', 'Gorai.007G142900' => 'gra', 'Gorai.011G171000' => 'gra', 'Gorai.011G171100' => 'gra', 'Gorai.013G104300' => 'gra', 'Gorai.013G104400' => 'gra', 'GSVIVG01000754001' => 'vvi', 'GSVIVG01000756001' => 'vvi', 'GSVIVG01010903001' => 'vvi', 'GSVIVG01017623001' => 'vvi', 'GSVIVG01018113001' => 'vvi', 'GSVIVG01018116001' => 'vvi', 'GSVIVG01018118001' => 'vvi', 'HanXRQChr03g0076211' => 'han', 'HanXRQChr03g0092431' => 'han', 'HanXRQChr03g0092441' => 'han', 'HanXRQChr03g0092591' => 'han', 'HanXRQChr03g0092671' => 'han', 'HanXRQChr03g0092681' => 'han', 'HanXRQChr03g0092691' => 'han', 'HanXRQChr03g0092701' => 'han', 'HanXRQChr03g0092721' => 'han', 'HanXRQChr03g0092731' => 'han', 'HanXRQChr04g0113681' => 'han', 'HanXRQChr10g0281371' => 'han', 'HanXRQChr11g0337141' => 'han', 'HanXRQChr13g0424521' => 'han', 'HanXRQChr13g0424531' => 'han', 'HanXRQChr13g0424541' => 'han', 'HanXRQChr16g0498221' => 'han', 'Haze_04377' => 'cav', 'Haze_11298' => 'cav', 'Haze_24547' => 'cav', 'Haze_24550' => 'cav', 'Haze_26587' => 'cav', 'Hma1.2p1_0650F.1_g195410' => 'hma', 'Hma1.2p1_0893F.1_g233470' => 'hma', 'HPP92_006508' => 'vpl', 'HPP92_024780' => 'vpl', 'Hund02688' => 'sun', 'Hund09380' => 'sun', 'Hund09381' => 'sun', 'Hund09832' => 'sun', 'Hund09833' => 'sun', 'Hund11351' => 'sun', 'Hund11513' => 'sun', 'Lalb_Chr06g0162591' => 'lal', 'Lalb_Chr06g0162601' => 'lal', 'Lalb_Chr06g0169321' => 'lal', 'Lalb_Chr09g0330951' => 'lal', 'Lalb_Chr16g0387631' => 'lal', 'Lalb_Chr21g0306241' => 'lal', 'Lalb_Chr25g0290051' => 'lal', 'Lalb_Chr25g0290061' => 'lal', 'Lalb_Chr25g0290071' => 'lal', 'Lj1g0003876' => 'lja', 'Lj1P1207T36' => 'lonja', 'Lj2C1156G12' => 'lonja', 'Lj3A793G39' => 'lonja', 'Lj3C580G2' => 'lonja', 'Lj3C780G2' => 'lonja', 'Lj3C780T4' => 'lonja', 'Lj3C793G9' => 'lonja', 'Lj4g0012960' => 'lja', 'Lj5g0021252' => 'lja', 'Lj5g0021484' => 'lja', 'Lj5g0024528' => 'lja', 'Lj6A399T12' => 'lonja', 'Lj6A656G65' => 'lonja', 'Lsat_1_v5_gn_3_125500' => 'lsa', 'Lsat_1_v5_gn_3_125540' => 'lsa', 'Lsat_1_v5_gn_5_72701' => 'lsa', 'Lsat_1_v5_gn_8_91560' => 'lsa', 'Lsat_1_v5_gn_9_9640' => 'lsa', 'Manes.01G200600' => 'mes', 'Manes.01G200700' => 'mes', 'Manes.03G168900' => 'mes', 'Manes.03G169000' => 'mes', 'Manes.05G085801' => 'mes', 'Manes.05G086200' => 'mes', 'Manes.15G036700' => 'mes', 'Manes.15G036900' => 'mes', 'Mapoly0004s0172' => 'mpo', 'Mapoly0023s0001' => 'mpo', 'Mapoly0142s0012' => 'mpo', 'MBI01_g32854_MAGBIO' => 'mbi', 'MBI11_g24427_MAGBIO' => 'mbi', 'MBI11_g47319_MAGBIO' => 'mbi', 'MCO01G433' => 'mco', 'MD00G1187800' => 'mdo', 'MD04G1226500' => 'mdo', 'MD05G1203900' => 'mdo', 'MD10G1191100' => 'mdo', 'MD12G1243500' => 'mdo', 'MD13G1207000' => 'mdo', 'MD13G1207100' => 'mdo', 'MD16G1208600' => 'mdo', 'Medtr1g050352' => 'mtr', 'Medtr1g070385' => 'mtr', 'Medtr1g070450' => 'mtr', 'Medtr1g075200' => 'mtr', 'Medtr1g075250' => 'mtr', 'Medtr1g075260' => 'mtr', 'Medtr1g475250' => 'mtr', 'Medtr4g075450' => 'mtr', 'Medtr7g096300' => 'mtr', 'Medtr8g105110' => 'mtr', 'MELO3C006470.2' => 'cme', 'MELO3C006471.2' => 'cme', 'MELO3C020772.2' => 'cme', 'MELO3C026780.2' => 'cme', 'MELO3C026781.2' => 'cme', 'Migut.D00390' => 'egut', 'Migut.G00435' => 'egut', 'Migut.G00436' => 'egut', 'Migut.G00718' => 'egut', 'MSTRG.21891' => 'ama', 'MSTRG.26910' => 'ama', 'MSTRG.4099' => 'ama', 'MSTRG.9925' => 'ama', 'Nitab4.5_0000165g0010' => 'nta', 'Nitab4.5_0000209g0180' => 'nta', 'Nitab4.5_0000244g0440' => 'nta', 'Nitab4.5_0000525g0220' => 'nta', 'Nitab4.5_0001597g0020' => 'nta', 'Nitab4.5_0001878g0040' => 'nta', 'Nitab4.5_0001878g0060' => 'nta', 'Nitab4.5_0002838g0100' => 'nta', 'Nitab4.5_0002838g0120' => 'nta', 'Nitab4.5_0004798g0030' => 'nta', 'Nitab4.5_0005420g0010' => 'nta', 'Nitab4.5_0005507g0010' => 'nta', 'Nitab4.5_0005574g0020' => 'nta', 'Nitab4.5_0005838g0010' => 'nta', 'Nitab4.5_0010580g0020' => 'nta', 'Nn1g02599' => 'nnu', 'Nn1g02608' => 'nnu', 'Nn3g17742' => 'nnu', 'Nn3g19534' => 'nnu', 'Nn3g19535' => 'nnu', 'Oeu008790.1' => 'oeu', 'Oeu008792.1' => 'oeu', 'Oeu032590.1' => 'oeu', 'Oeu035349.1' => 'oeu', 'Oeu049791.1' => 'oeu', 'Os01g0774500' => 'osa', 'Os03g0628800' => 'osa', 'Os03g0798600' => 'osa', 'Os05g0508800' => 'osa', 'Peaxi162Scf00036g02018' => 'pax', 'Peaxi162Scf00578g00032' => 'pax', 'Peaxi162Scf00578g00317' => 'pax', 'Peaxi162Scf00785g00114' => 'pax', 'Peaxi162Scf00813g00119' => 'pax', 'Peaxi162Scf00906g00227' => 'pax', 'PGR004G0875' => 'pgr', 'PGR004G2424' => 'pgr', 'PGR031G1239' => 'pgr', 'PGR031G2474' => 'pgr', 'PGR044G0423' => 'pgr', 'PGSC0003DMG400001128' => 'stu', 'PGSC0003DMG400007336' => 'stu', 'PGSC0003DMG400016318' => 'stu', 'PGSC0003DMG400016319' => 'stu', 'PGSC0003DMG400018074' => 'stu', 'Phvul.001G157700' => 'pvu', 'Phvul.002G148550' => 'pvu', 'Phvul.002G320200' => 'pvu', 'Phvul.003G089200' => 'pvu', 'Phvul.007G126000' => 'pvu', 'Phvul.007G126100' => 'pvu', 'Phvul.007G178000' => 'pvu', 'Phvul.007G178200' => 'pvu', 'Potri.002G043000' => 'ptr', 'Potri.002G043200' => 'ptr', 'Potri.003G123750' => 'ptr', 'Potri.005G055401' => 'ptr', 'Potri.005G219700' => 'ptr', 'Potri.005G220000' => 'ptr', 'Potri.008G161901' => 'ptr', 'Potri.008G162000' => 'ptr', 'Potri.008G162400' => 'ptr', 'Potri.010G076900' => 'ptr', 'Pp3c12_9180' => 'ppa', 'Pp3c13_19770' => 'ppa', 'Pp3c14_22950' => 'ppa', 'Pp3c16_12160' => 'ppa', 'Pp3c27_7820' => 'ppa', 'Pp3c2_3490' => 'ppa', 'Pp3c3_23700' => 'ppa', 'Pp3c3_36520' => 'ppa', 'Pp3c4_15250' => 'ppa', 'PRCOL_00007002' => 'pco', 'Prupe.1G030600' => 'ppe', 'Prupe.1G030700' => 'ppe', 'Prupe.6G345200' => 'ppe', 'Prupe.8G230300' => 'ppe', 'Prupe.8G230500' => 'ppe', 'Psat3g059600' => 'psa', 'Psat5g200920' => 'psa', 'Psat6g056440' => 'psa', 'Psat6g057360' => 'psa', 'Psat6g134120' => 'psa', 'Psat6g134160' => 'psa', 'Psat7g008640' => 'psa', 'Psat7g185240' => 'psa', 'PSO017G1330' => 'pso', 'PSO063G6097' => 'pso', 'PSO170G0835' => 'pso', 'PSO170G2499' => 'pso', 'PSO210G5058' => 'pso', 'PSO210G6154' => 'pso', 'PSO585G0031' => 'pso', 'PSO832G0264' => 'pso', 'PSO832G4288' => 'pso', 'QL03p027355' => 'qlo', 'QL03p027430' => 'qlo', 'QL04p081380' => 'qlo', 'QL06p015642' => 'qlo', 'QL06p015650' => 'qlo', 'QL06p015686' => 'qlo', 'QL12p042927' => 'qlo', 'QL93p1863_0035' => 'qlo', 'RcHm_v2.0_Chr3g0450581' => 'rch', 'RcHm_v2.0_Chr4g0390371' => 'rch', 'RcHm_v2.0_Chr4g0390381' => 'rch', 'RcHm_v2.0_Chr4g0390491' => 'rch', 'RcHm_v2.0_Chr4g0390501' => 'rch', 'RcHm_v2.0_Chr6g0289231' => 'rch', 'Rhsim04G0190400' => 'rsi', 'Rhsim04G0190500' => 'rsi', 'Rhsim04G0190600' => 'rsi', 'Rhsim13G0031400' => 'rsi', 'Rhsim13G0165600' => 'rsi', 'RhsimUnG0114600' => 'rsi', 'RhsimUnG0114700' => 'rsi', 'Sabra02G0034800' => 'sbr', 'Sabra02G0035100' => 'sbr', 'Sabra05G0168600' => 'sbr', 'Sabra05G0168800' => 'sbr', 'Sabra08G0123700' => 'sbr', 'Sabra10G0031900' => 'sbr', 'Sabra13G0039000' => 'sbr', 'SalBow2G0782' => 'sbo', 'SalBow2G1403' => 'sbo', 'SalBow4G0074' => 'sbo', 'SalBow4G2635' => 'sbo', 'SalBow5G3010' => 'sbo', 'Sc05g0000870' => 'sci', 'Sc05g0000890' => 'sci', 'Sc13g0005000' => 'sci', 'Sc13g0005030' => 'sci', 'Sc19g0003790' => 'sci', 'Sc19g0003800' => 'sci', 'Sed0003467' => 'sed', 'Sed0009355' => 'sed', 'Sed0009894' => 'sed', 'Sed0011972' => 'sed', 'Sed0021483' => 'sed', 'Sed0021750' => 'sed', 'Sed0026279' => 'sed', 'SEGI_05312' => 'sgi', 'SEGI_10112' => 'sgi', 'SEGI_15835' => 'sgi', 'SEGI_30386' => 'sgi', 'SEGI_34122' => 'sgi', 'SEGI_35063' => 'sgi', 'SGA_v2.0_scaffold101G29794' => 'sas', 'SGA_v2.0_scaffold1G00573' => 'sas', 'SGA_v2.0_scaffold79G25637' => 'sas', 'SGA_v2.0_scaffold88G27283' => 'sas', 'SGA_v2.0_scaffold88G27285' => 'sas', 'SGA_v2.0_scaffold88G27331' => 'sas', 'SHI09937' => 'shi', 'SMO119G0302' => 'smo', 'SMO137G0231' => 'smo', 'SMO367G1151' => 'smo', 'Solyc02g082000.3' => 'sly', 'Solyc06g031670.3' => 'sly', 'Solyc06g053810.3' => 'sly', 'Solyc07g025457.1' => 'sly', 'Solyc08g059740.1' => 'sly', 'Solyc08g059750.3' => 'sly', 'Solyc09g083370.3' => 'sly', 'Solyc12g038950.3' => 'sly', 'Sopen02g026630' => 'spe', 'Sopen06g018930' => 'spe', 'Sopen06g018940' => 'spe', 'Sopen08g009460' => 'spe', 'Sopen09g032290' => 'spe', 'Sp1g03080' => 'spa', 'Sp1g03090' => 'spa', 'Sp1g05480' => 'spa', 'Sp2g07860' => 'spa', 'Sp2g08430' => 'spa', 'Sp2g08440' => 'spa', 'Sp2g26200' => 'spa', 'Sp4g13170' => 'spa', 'Sp6g33840' => 'spa', 'SpUn1204_0010' => 'spa', 'TAR365G0908' => 'tar', 'TAR381G1270' => 'tar', 'TAR381G1651' => 'tar', 'TAR625G1131' => 'tar', 'TAR633G0962' => 'tar', 'TAR633G1729' => 'tar', 'TAR633G1864' => 'tar', 'TAR636G0221' => 'tar', 'TAR636G0314' => 'tar', 'TAR636G3202' => 'tar', 'THA.LOC104800805' => 'tha', 'THA.LOC104801096' => 'tha', 'THA.LOC104801555' => 'tha', 'THA.LOC104808491' => 'tha', 'THA.LOC104808595' => 'tha', 'THA.LOC104815985' => 'tha', 'THA.LOC104822250' => 'tha', 'THA.LOC104826071' => 'tha', 'Thecc.01G265200' => 'tca', 'Thecc.01G265300' => 'tca', 'Thecc.01G265700' => 'tca', 'Thecc.03G109100' => 'tca', 'Thecc.04G245900' => 'tca', 'Thecc.04G246000' => 'tca', 'Thhalv10003334m.g' => 'esa', 'Thhalv10005508m.g' => 'esa', 'Thhalv10005643m.g' => 'esa', 'Thhalv10007316m.g' => 'esa', 'Thhalv10009006m.g' => 'esa', 'Thhalv10009309m.g' => 'esa', 'Thhalv10014917m.g' => 'esa', 'Thhalv10014919m.g' => 'esa', 'Thhalv10015393m.g' => 'esa', 'Thhalv10016515m.g' => 'esa', 'Thhalv10029242m.g' => 'esa', 'TPR.G16654' => 'tpr', 'TPR.G20589' => 'tpr', 'TPR.G23029' => 'tpr', 'TPR.G27731' => 'tpr', 'TPR.G28889' => 'tpr', 'TPR.G28899' => 'tpr', 'TPR.G30846' => 'tpr', 'TPR.G5452' => 'tpr', 'TPR.G5713' => 'tpr', 'TPR.G9046' => 'tpr', 'TPR.G9061' => 'tpr', 'TWI09G1075' => 'twi', 'TWI12G0806' => 'twi', 'TWI18G0108' => 'twi', 'TWI53G1361' => 'twi', 'TWI73G0185' => 'twi', 'TWI73G0427' => 'twi', 'unitig_37.g12001' => 'ugi', 'unitig_747.g21660' => 'ugi', 'unitig_748.g7232' => 'ugi', 'unitig_748.g7315' => 'ugi', 'unitig_85.g27262' => 'ugi', 'unitig_92.g28220' => 'ugi', 'vmacro02632' => 'vma', 'vmacro08410' => 'vma', 'vmacro08411' => 'vma', 'vmacro15407' => 'vma', 'VMungo0251G3619' => 'vmu', 'VMungo0720G1204' => 'vmu', 'VMungo0720G1918' => 'vmu', 'VMungo0720G2387' => 'vmu', 'VMungo0720G2961' => 'vmu', 'VMungo1215G2154' => 'vmu', 'VMungo1383G2411' => 'vmu', 'Zm00001eb051130' => 'zma', 'Zm00001eb116830' => 'zma', 'Zm00001eb116850' => 'zma', 'Zm00001eb151740' => 'zma', 'Zm00001eb292360' => 'zma', 'Zm00001eb301640' => 'zma' ), 'gf_id' => 'HOM05D000856', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000856' ), 'data_identifier' => 'HOM05D000856', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000856', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p00010' => 'bna', 'A03p04160' => 'bna', 'A03p17160' => 'bna', 'A04p23370' => 'bna', 'A05p14860' => 'bna', 'A08p37020' => 'bna', 'A09p08050' => 'bna', 'A09p66800' => 'bna', 'A09p67940' => 'bna', 'A10p02680' => 'bna', 'A10p05320' => 'bna', 'Aa31LG1G20560' => 'aar', 'Aa31LG1G20610' => 'aar', 'Aa31LG1G7810' => 'aar', 'Aa31LG5G3590' => 'aar', 'Aa31LG5G6140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3819' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4683' => 'aag', 'Actinidia04480' => 'ach', 'Actinidia05466' => 'ach', 'Actinidia08445' => 'ach', 'Actinidia21170' => 'ach', 'Actinidia24812' => 'ach', 'Actinidia24951' => 'ach', 'Actinidia40088' => 'ach', 'Ah.02g111660' => 'amhyb', 'Ah.11g048900' => 'amhyb', 'Ah.11g049910' => 'amhyb', 'AL1G13870' => 'aly', 'AL1G13880' => 'aly', 'AL1G16760' => 'aly', 'AL390U10020' => 'aly', 'AL4G25520' => 'aly', 'AL6G19890' => 'aly', 'AL6G19900' => 'aly', 'AL6G19910' => 'aly', 'AL8G40100' => 'aly', 'Aqoxy2G03562' => 'aox', 'Aqoxy5G00316' => 'aox', 'Aqoxy5G00926' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1628KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1H403S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2FU6SJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.882I6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8YRY2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YN1SN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AF70II' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZA8L1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F916KL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHRD8H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KTZ8QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S22EMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8M29T' => 'arhy', 'AT1G04270' => 'ath', 'AT1G04280' => 'ath', 'AT1G06750' => 'ath', 'AT1G33850' => 'ath', 'AT2G30630' => 'ath', 'AT5G09490' => 'ath', 'AT5G09500' => 'ath', 'AT5G09510' => 'ath', 'AT5G43640' => 'ath', 'AT5G63070' => 'ath', 'ATR0605G315' => 'atr', 'Atru.chr11.175' => 'acertr', 'Atru.chr11.653' => 'acertr', 'Atru.chr3.1616' => 'acertr', 'Atru.chr4.2230' => 'acertr', 'Atru.chr4.2232' => 'acertr', 'Atru.chr5.1598' => 'acertr', 'Atru.chr5.1600' => 'acertr', 'Atru.chr5.2188' => 'acertr', 'AUR62008326' => 'cqu', 'AUR62011922' => 'cqu', 'AUR62011924' => 'cqu', 'AUR62021771' => 'cqu', 'AUR62032237' => 'cqu', 'AUR62032240' => 'cqu', 'BcaB01g05572' => 'bca', 'BcaB02g10337' => 'bca', 'BcaB04g19944' => 'bca', 'BcaB05g21548' => 'bca', 'BcaB05g21549' => 'bca', 'BcaB05g23227' => 'bca', 'BcaB06g26256' => 'bca', 'BcaB06g26257' => 'bca', 'BcaB06g28379' => 'bca', 'BcaC02g11159' => 'bca', 'BcaC03g13258' => 'bca', 'BcaC03g13259' => 'bca', 'BcaC05g24456' => 'bca', 'BcaC05g24457' => 'bca', 'BcaC07g36922' => 'bca', 'BcaC07g36923' => 'bca', 'BcaC07g42050' => 'bca', 'BcaC07g42176' => 'bca', 'BcaC07g42195' => 'bca', 'BcaC07g42196' => 'bca', 'BcaNung06674' => 'bca', 'BolC2t06351H' => 'bol', 'BolC2t06352H' => 'bol', 'BolC3t12993H' => 'bol', 'BolC4t23525H' => 'bol', 'BolC4t27475H' => 'bol', 'BolC5t29025H' => 'bol', 'BolC5t29026H' => 'bol', 'BolC8t46898H' => 'bol', 'BolC8t46899H' => 'bol', 'BolC8t52630H' => 'bol', 'BolC8t52765H' => 'bol', 'BolC9t53824H' => 'bol', 'BraA03t09760Z' => 'bra', 'BraA03t10990Z' => 'bra', 'BraA05t20413Z' => 'bra', 'BraA08t35602Z' => 'bra', 'BraA09t36458Z' => 'bra', 'BraA09t42018Z' => 'bra', 'BraA09t42129Z' => 'bra', 'BraA10t42536Z' => 'bra', 'BraA10t42537Z' => 'bra', 'C01p10690' => 'bna', 'C02p03890' => 'bna', 'C02p03900' => 'bna', 'C03p04620' => 'bna', 'C04p19870' => 'bna', 'C04p59670' => 'bna', 'C05p02460' => 'bna', 'C05p02470' => 'bna', 'C08p00980' => 'bna', 'C08p00990' => 'bna', 'C08p51030' => 'bna', 'C08p52360' => 'bna', 'C09p09120' => 'bna', 'CAN.G19.15' => 'can', 'CAN.G251.10' => 'can', 'CAN.G251.9' => 'can', 'CAN.G398.24' => 'can', 'CAN.G410.32' => 'can', 'CAN.G881.2' => 'can', 'CANSAT01G3025' => 'cansat', 'CANSAT78G1211' => 'cansat', 'CANSAT78G1218' => 'cansat', 'CANSAT78G1521' => 'cansat', 'CANSAT78G1670' => 'cansat', 'CARHR003600' => 'chi', 'CARHR003610' => 'chi', 'CARHR006290' => 'chi', 'CARHR006430' => 'chi', 'CARHR124110' => 'chi', 'CARHR203870' => 'chi', 'CARHR203880' => 'chi', 'CARHR203890' => 'chi', 'CARHR276880' => 'chi', 'Carub.0001s0346' => 'cru', 'Carub.0001s0347' => 'cru', 'Carub.0001s0607' => 'cru', 'Carub.0003s2768' => 'cru', 'Carub.0003s2769' => 'cru', 'Carub.0004s1178' => 'cru', 'Carub.0006s0806' => 'cru', 'Carub.0006s0807' => 'cru', 'Carub.0006s0808' => 'cru', 'Carub.0008s0501' => 'cru', 'Carub.0008s2379' => 'cru', 'Ca_08655_v3' => 'car', 'Ca_08922_v3' => 'car', 'Ca_08923_v3' => 'car', 'Ca_09119_v3' => 'car', 'Ca_09703_v3' => 'car', 'Ca_09705_v3' => 'car', 'Ca_09835_v3' => 'car', 'Ca_26403_v3' => 'car', 'Ca_30719_v3' => 'car', 'CBR_g17958' => 'cbr', 'CBR_g40516' => 'cbr', 'Cc00_g05350' => 'ccan', 'Cc01_g18690' => 'ccan', 'Cc03_g04830' => 'ccan', 'Cc03_g04850' => 'ccan', 'CDE02G4469' => 'cde', 'CDE06G0883' => 'cde', 'CDE06G1295' => 'cde', 'CDE06G1390' => 'cde', 'CDE07G0584' => 'cde', 'CDE07G1084' => 'cde', 'CDE08G1259' => 'cde', 'Cfa002341' => 'cfa', 'Cfa024337' => 'cfa', 'Ciclev10004749m.g' => 'ccl', 'Ciclev10006127m.g' => 'ccl', 'Ciclev10019720m.g' => 'ccl', 'Ciclev10022652m.g' => 'ccl', 'CiPaw.01G190400' => 'cil', 'CiPaw.01G190500' => 'cil', 'CiPaw.02G116400' => 'cil', 'CiPaw.02G116500' => 'cil', 'CiPaw.04G183000' => 'cil', 'CiPaw.04G183300' => 'cil', 'ClCG05G004610' => 'cla', 'ClCG05G004620' => 'cla', 'ClCG06G006730' => 'cla', 'ClCG06G006740' => 'cla', 'ClCG11G003690' => 'cla', 'COL.COLO4_08276' => 'col', 'COL.COLO4_08277' => 'col', 'COL.COLO4_15787' => 'col', 'COL.COLO4_15789' => 'col', 'Cpa.g.c44815' => 'cpa', 'Cpa.g.sc52.144' => 'cpa', 'Cpa.g.sc58.46' => 'cpa', 'Cpa.g.sc58.47' => 'cpa', 'Cre08.g360900' => 'cre', 'CsaV3_2G013030' => 'csa', 'CsaV3_2G013050' => 'csa', 'CsaV3_2G015620' => 'csa', 'CsaV3_3G012590' => 'csa', 'CsaV3_3G012600' => 'csa', 'CSS0001641' => 'camsi', 'CSS0008310' => 'camsi', 'CSS0013011' => 'camsi', 'CSS0017147' => 'camsi', 'CSS0022970' => 'camsi', 'CSS0025655' => 'camsi', 'CSS0028665' => 'camsi', 'CSS0029117' => 'camsi', 'CSS0032024' => 'camsi', 'CSS0039681' => 'camsi', 'CSS0046516' => 'camsi', 'CSS0050307' => 'camsi', 'DCAR_005871' => 'dca', 'DCAR_007342' => 'dca', 'DCAR_024228' => 'dca', 'DCAR_027277' => 'dca', 'DCAR_030718' => 'dca', 'Dinv20287' => 'din', 'Dinv22461' => 'din', 'Dinv22464' => 'din', 'Dinv29912' => 'din', 'Dinv29913' => 'din', 'Dinv34580' => 'din', 'Dinv34582' => 'din', 'Dinv44632' => 'din', 'Duzib052G0266' => 'dzi', 'Duzib133G0907' => 'dzi', 'Duzib133G1034' => 'dzi', 'Duzib138G0207' => 'dzi', 'Duzib138G0491' => 'dzi', 'Duzib151G0812' => 'dzi', 'Duzib151G1166' => 'dzi', 'Duzib168G0192' => 'dzi', 'Duzib211G0077' => 'dzi', 'Duzib212G0429' => 'dzi', 'Duzib212G0472' => 'dzi', 'ECA233G2617' => 'eca', 'ECA236G4188' => 'eca', 'ECA240G0936' => 'eca', 'ECA240G1129' => 'eca', 'ECA247G0623' => 'eca', 'EL10Ac5g10451' => 'bvu', 'EL10Ac5g10453' => 'bvu', 'EL10Ac5g10894' => 'bvu', 'Eucgr.H00192' => 'egr', 'Eucgr.H00193' => 'egr', 'Eucgr.H00194' => 'egr', 'Eucgr.J01562' => 'egr', 'Eucgr.K03301' => 'egr', 'FAN02G0632' => 'fan', 'FAN05G5378' => 'fan', 'FAN09G3247' => 'fan', 'FAN12G0435' => 'fan', 'FAN12G2426' => 'fan', 'FAN14G1707' => 'fan', 'FAN14G4725' => 'fan', 'FAN15G2071' => 'fan', 'FAN17G3065' => 'fan', 'FAN19G1376' => 'fan', 'FAN20G0354' => 'fan', 'FAN20G2429' => 'fan', 'FAN20G2658' => 'fan', 'FAN24G2343' => 'fan', 'FAN27G2362' => 'fan', 'FAN28G1765' => 'fan', 'FvH4_1g16020' => 'fve', 'FvH4_2g04890' => 'fve', 'FvH4_2g22270' => 'fve', 'FvH4_4g02630' => 'fve', 'FvH4_4g02640' => 'fve', 'FvH4_6g02650' => 'fve', 'Glyma.02G140600' => 'gma', 'Glyma.03G159900' => 'gma', 'Glyma.05G234800' => 'gma', 'Glyma.07G269600' => 'gma', 'Glyma.08G042300' => 'gma', 'Glyma.10G033500' => 'gma', 'Glyma.10G185200' => 'gma', 'Glyma.17G004300' => 'gma', 'Glyma.19G161900' => 'gma', 'Glyma.20G205100' => 'gma', 'Glyma.20G205200' => 'gma', 'Gohir.A01G139101' => 'ghi', 'Gohir.A02G035600' => 'ghi', 'Gohir.A02G117901' => 'ghi', 'Gohir.A07G210100' => 'ghi', 'Gohir.A07G210200' => 'ghi', 'Gohir.A08G061100' => 'ghi', 'Gohir.A09G223000' => 'ghi', 'Gohir.A09G223100' => 'ghi', 'Gohir.A10G113900' => 'ghi', 'Gohir.A10G114000' => 'ghi', 'Gohir.D02G042300' => 'ghi', 'Gohir.D07G216100' => 'ghi', 'Gohir.D07G216200' => 'ghi', 'Gohir.D08G070400' => 'ghi', 'Gohir.D09G225000' => 'ghi', 'Gohir.D09G225100' => 'ghi', 'Gohir.D10G152300' => 'ghi', 'Gohir.D10G153200' => 'ghi', 'Gohir.D11G133701' => 'ghi', 'Gorai.004G074100' => 'gra', 'Gorai.005G046800' => 'gra', 'Gorai.006G246500' => 'gra', 'Gorai.006G246600' => 'gra', 'Gorai.007G142900' => 'gra', 'Gorai.011G171000' => 'gra', 'Gorai.011G171100' => 'gra', 'Gorai.013G104300' => 'gra', 'Gorai.013G104400' => 'gra', 'GSVIVG01000754001' => 'vvi', 'GSVIVG01000756001' => 'vvi', 'GSVIVG01010903001' => 'vvi', 'GSVIVG01017623001' => 'vvi', 'GSVIVG01018113001' => 'vvi', 'GSVIVG01018116001' => 'vvi', 'GSVIVG01018118001' => 'vvi', 'HanXRQChr03g0076211' => 'han', 'HanXRQChr03g0092431' => 'han', 'HanXRQChr03g0092441' => 'han', 'HanXRQChr03g0092591' => 'han', 'HanXRQChr03g0092671' => 'han', 'HanXRQChr03g0092681' => 'han', 'HanXRQChr03g0092691' => 'han', 'HanXRQChr03g0092701' => 'han', 'HanXRQChr03g0092721' => 'han', 'HanXRQChr03g0092731' => 'han', 'HanXRQChr04g0113681' => 'han', 'HanXRQChr10g0281371' => 'han', 'HanXRQChr11g0337141' => 'han', 'HanXRQChr13g0424521' => 'han', 'HanXRQChr13g0424531' => 'han', 'HanXRQChr13g0424541' => 'han', 'HanXRQChr16g0498221' => 'han', 'Haze_04377' => 'cav', 'Haze_11298' => 'cav', 'Haze_24547' => 'cav', 'Haze_24550' => 'cav', 'Haze_26587' => 'cav', 'Hma1.2p1_0650F.1_g195410' => 'hma', 'Hma1.2p1_0893F.1_g233470' => 'hma', 'HPP92_006508' => 'vpl', 'HPP92_024780' => 'vpl', 'Hund02688' => 'sun', 'Hund09380' => 'sun', 'Hund09381' => 'sun', 'Hund09832' => 'sun', 'Hund09833' => 'sun', 'Hund11351' => 'sun', 'Hund11513' => 'sun', 'Lalb_Chr06g0162591' => 'lal', 'Lalb_Chr06g0162601' => 'lal', 'Lalb_Chr06g0169321' => 'lal', 'Lalb_Chr09g0330951' => 'lal', 'Lalb_Chr16g0387631' => 'lal', 'Lalb_Chr21g0306241' => 'lal', 'Lalb_Chr25g0290051' => 'lal', 'Lalb_Chr25g0290061' => 'lal', 'Lalb_Chr25g0290071' => 'lal', 'Lj1g0003876' => 'lja', 'Lj1P1207T36' => 'lonja', 'Lj2C1156G12' => 'lonja', 'Lj3A793G39' => 'lonja', 'Lj3C580G2' => 'lonja', 'Lj3C780G2' => 'lonja', 'Lj3C780T4' => 'lonja', 'Lj3C793G9' => 'lonja', 'Lj4g0012960' => 'lja', 'Lj5g0021252' => 'lja', 'Lj5g0021484' => 'lja', 'Lj5g0024528' => 'lja', 'Lj6A399T12' => 'lonja', 'Lj6A656G65' => 'lonja', 'Lsat_1_v5_gn_3_125500' => 'lsa', 'Lsat_1_v5_gn_3_125540' => 'lsa', 'Lsat_1_v5_gn_5_72701' => 'lsa', 'Lsat_1_v5_gn_8_91560' => 'lsa', 'Lsat_1_v5_gn_9_9640' => 'lsa', 'Manes.01G200600' => 'mes', 'Manes.01G200700' => 'mes', 'Manes.03G168900' => 'mes', 'Manes.03G169000' => 'mes', 'Manes.05G085801' => 'mes', 'Manes.05G086200' => 'mes', 'Manes.15G036700' => 'mes', 'Manes.15G036900' => 'mes', 'Mapoly0004s0172' => 'mpo', 'Mapoly0023s0001' => 'mpo', 'Mapoly0142s0012' => 'mpo', 'MBI01_g32854_MAGBIO' => 'mbi', 'MBI11_g24427_MAGBIO' => 'mbi', 'MBI11_g47319_MAGBIO' => 'mbi', 'MCO01G433' => 'mco', 'MD00G1187800' => 'mdo', 'MD04G1226500' => 'mdo', 'MD05G1203900' => 'mdo', 'MD10G1191100' => 'mdo', 'MD12G1243500' => 'mdo', 'MD13G1207000' => 'mdo', 'MD13G1207100' => 'mdo', 'MD16G1208600' => 'mdo', 'Medtr1g050352' => 'mtr', 'Medtr1g070385' => 'mtr', 'Medtr1g070450' => 'mtr', 'Medtr1g075200' => 'mtr', 'Medtr1g075250' => 'mtr', 'Medtr1g075260' => 'mtr', 'Medtr1g475250' => 'mtr', 'Medtr4g075450' => 'mtr', 'Medtr7g096300' => 'mtr', 'Medtr8g105110' => 'mtr', 'MELO3C006470.2' => 'cme', 'MELO3C006471.2' => 'cme', 'MELO3C020772.2' => 'cme', 'MELO3C026780.2' => 'cme', 'MELO3C026781.2' => 'cme', 'Migut.D00390' => 'egut', 'Migut.G00435' => 'egut', 'Migut.G00436' => 'egut', 'Migut.G00718' => 'egut', 'MSTRG.21891' => 'ama', 'MSTRG.26910' => 'ama', 'MSTRG.4099' => 'ama', 'MSTRG.9925' => 'ama', 'Nitab4.5_0000165g0010' => 'nta', 'Nitab4.5_0000209g0180' => 'nta', 'Nitab4.5_0000244g0440' => 'nta', 'Nitab4.5_0000525g0220' => 'nta', 'Nitab4.5_0001597g0020' => 'nta', 'Nitab4.5_0001878g0040' => 'nta', 'Nitab4.5_0001878g0060' => 'nta', 'Nitab4.5_0002838g0100' => 'nta', 'Nitab4.5_0002838g0120' => 'nta', 'Nitab4.5_0004798g0030' => 'nta', 'Nitab4.5_0005420g0010' => 'nta', 'Nitab4.5_0005507g0010' => 'nta', 'Nitab4.5_0005574g0020' => 'nta', 'Nitab4.5_0005838g0010' => 'nta', 'Nitab4.5_0010580g0020' => 'nta', 'Nn1g02599' => 'nnu', 'Nn1g02608' => 'nnu', 'Nn3g17742' => 'nnu', 'Nn3g19534' => 'nnu', 'Nn3g19535' => 'nnu', 'Oeu008790.1' => 'oeu', 'Oeu008792.1' => 'oeu', 'Oeu032590.1' => 'oeu', 'Oeu035349.1' => 'oeu', 'Oeu049791.1' => 'oeu', 'Os01g0774500' => 'osa', 'Os03g0628800' => 'osa', 'Os03g0798600' => 'osa', 'Os05g0508800' => 'osa', 'Peaxi162Scf00036g02018' => 'pax', 'Peaxi162Scf00578g00032' => 'pax', 'Peaxi162Scf00578g00317' => 'pax', 'Peaxi162Scf00785g00114' => 'pax', 'Peaxi162Scf00813g00119' => 'pax', 'Peaxi162Scf00906g00227' => 'pax', 'PGR004G0875' => 'pgr', 'PGR004G2424' => 'pgr', 'PGR031G1239' => 'pgr', 'PGR031G2474' => 'pgr', 'PGR044G0423' => 'pgr', 'PGSC0003DMG400001128' => 'stu', 'PGSC0003DMG400007336' => 'stu', 'PGSC0003DMG400016318' => 'stu', 'PGSC0003DMG400016319' => 'stu', 'PGSC0003DMG400018074' => 'stu', 'Phvul.001G157700' => 'pvu', 'Phvul.002G148550' => 'pvu', 'Phvul.002G320200' => 'pvu', 'Phvul.003G089200' => 'pvu', 'Phvul.007G126000' => 'pvu', 'Phvul.007G126100' => 'pvu', 'Phvul.007G178000' => 'pvu', 'Phvul.007G178200' => 'pvu', 'Potri.002G043000' => 'ptr', 'Potri.002G043200' => 'ptr', 'Potri.003G123750' => 'ptr', 'Potri.005G055401' => 'ptr', 'Potri.005G219700' => 'ptr', 'Potri.005G220000' => 'ptr', 'Potri.008G161901' => 'ptr', 'Potri.008G162000' => 'ptr', 'Potri.008G162400' => 'ptr', 'Potri.010G076900' => 'ptr', 'Pp3c12_9180' => 'ppa', 'Pp3c13_19770' => 'ppa', 'Pp3c14_22950' => 'ppa', 'Pp3c16_12160' => 'ppa', 'Pp3c27_7820' => 'ppa', 'Pp3c2_3490' => 'ppa', 'Pp3c3_23700' => 'ppa', 'Pp3c3_36520' => 'ppa', 'Pp3c4_15250' => 'ppa', 'PRCOL_00007002' => 'pco', 'Prupe.1G030600' => 'ppe', 'Prupe.1G030700' => 'ppe', 'Prupe.6G345200' => 'ppe', 'Prupe.8G230300' => 'ppe', 'Prupe.8G230500' => 'ppe', 'Psat3g059600' => 'psa', 'Psat5g200920' => 'psa', 'Psat6g056440' => 'psa', 'Psat6g057360' => 'psa', 'Psat6g134120' => 'psa', 'Psat6g134160' => 'psa', 'Psat7g008640' => 'psa', 'Psat7g185240' => 'psa', 'PSO017G1330' => 'pso', 'PSO063G6097' => 'pso', 'PSO170G0835' => 'pso', 'PSO170G2499' => 'pso', 'PSO210G5058' => 'pso', 'PSO210G6154' => 'pso', 'PSO585G0031' => 'pso', 'PSO832G0264' => 'pso', 'PSO832G4288' => 'pso', 'QL03p027355' => 'qlo', 'QL03p027430' => 'qlo', 'QL04p081380' => 'qlo', 'QL06p015642' => 'qlo', 'QL06p015650' => 'qlo', 'QL06p015686' => 'qlo', 'QL12p042927' => 'qlo', 'QL93p1863_0035' => 'qlo', 'RcHm_v2.0_Chr3g0450581' => 'rch', 'RcHm_v2.0_Chr4g0390371' => 'rch', 'RcHm_v2.0_Chr4g0390381' => 'rch', 'RcHm_v2.0_Chr4g0390491' => 'rch', 'RcHm_v2.0_Chr4g0390501' => 'rch', 'RcHm_v2.0_Chr6g0289231' => 'rch', 'Rhsim04G0190400' => 'rsi', 'Rhsim04G0190500' => 'rsi', 'Rhsim04G0190600' => 'rsi', 'Rhsim13G0031400' => 'rsi', 'Rhsim13G0165600' => 'rsi', 'RhsimUnG0114600' => 'rsi', 'RhsimUnG0114700' => 'rsi', 'Sabra02G0034800' => 'sbr', 'Sabra02G0035100' => 'sbr', 'Sabra05G0168600' => 'sbr', 'Sabra05G0168800' => 'sbr', 'Sabra08G0123700' => 'sbr', 'Sabra10G0031900' => 'sbr', 'Sabra13G0039000' => 'sbr', 'SalBow2G0782' => 'sbo', 'SalBow2G1403' => 'sbo', 'SalBow4G0074' => 'sbo', 'SalBow4G2635' => 'sbo', 'SalBow5G3010' => 'sbo', 'Sc05g0000870' => 'sci', 'Sc05g0000890' => 'sci', 'Sc13g0005000' => 'sci', 'Sc13g0005030' => 'sci', 'Sc19g0003790' => 'sci', 'Sc19g0003800' => 'sci', 'Sed0003467' => 'sed', 'Sed0009355' => 'sed', 'Sed0009894' => 'sed', 'Sed0011972' => 'sed', 'Sed0021483' => 'sed', 'Sed0021750' => 'sed', 'Sed0026279' => 'sed', 'SEGI_05312' => 'sgi', 'SEGI_10112' => 'sgi', 'SEGI_15835' => 'sgi', 'SEGI_30386' => 'sgi', 'SEGI_34122' => 'sgi', 'SEGI_35063' => 'sgi', 'SGA_v2.0_scaffold101G29794' => 'sas', 'SGA_v2.0_scaffold1G00573' => 'sas', 'SGA_v2.0_scaffold79G25637' => 'sas', 'SGA_v2.0_scaffold88G27283' => 'sas', 'SGA_v2.0_scaffold88G27285' => 'sas', 'SGA_v2.0_scaffold88G27331' => 'sas', 'SHI09937' => 'shi', 'SMO119G0302' => 'smo', 'SMO137G0231' => 'smo', 'SMO367G1151' => 'smo', 'Solyc02g082000.3' => 'sly', 'Solyc06g031670.3' => 'sly', 'Solyc06g053810.3' => 'sly', 'Solyc07g025457.1' => 'sly', 'Solyc08g059740.1' => 'sly', 'Solyc08g059750.3' => 'sly', 'Solyc09g083370.3' => 'sly', 'Solyc12g038950.3' => 'sly', 'Sopen02g026630' => 'spe', 'Sopen06g018930' => 'spe', 'Sopen06g018940' => 'spe', 'Sopen08g009460' => 'spe', 'Sopen09g032290' => 'spe', 'Sp1g03080' => 'spa', 'Sp1g03090' => 'spa', 'Sp1g05480' => 'spa', 'Sp2g07860' => 'spa', 'Sp2g08430' => 'spa', 'Sp2g08440' => 'spa', 'Sp2g26200' => 'spa', 'Sp4g13170' => 'spa', 'Sp6g33840' => 'spa', 'SpUn1204_0010' => 'spa', 'TAR365G0908' => 'tar', 'TAR381G1270' => 'tar', 'TAR381G1651' => 'tar', 'TAR625G1131' => 'tar', 'TAR633G0962' => 'tar', 'TAR633G1729' => 'tar', 'TAR633G1864' => 'tar', 'TAR636G0221' => 'tar', 'TAR636G0314' => 'tar', 'TAR636G3202' => 'tar', 'THA.LOC104800805' => 'tha', 'THA.LOC104801096' => 'tha', 'THA.LOC104801555' => 'tha', 'THA.LOC104808491' => 'tha', 'THA.LOC104808595' => 'tha', 'THA.LOC104815985' => 'tha', 'THA.LOC104822250' => 'tha', 'THA.LOC104826071' => 'tha', 'Thecc.01G265200' => 'tca', 'Thecc.01G265300' => 'tca', 'Thecc.01G265700' => 'tca', 'Thecc.03G109100' => 'tca', 'Thecc.04G245900' => 'tca', 'Thecc.04G246000' => 'tca', 'Thhalv10003334m.g' => 'esa', 'Thhalv10005508m.g' => 'esa', 'Thhalv10005643m.g' => 'esa', 'Thhalv10007316m.g' => 'esa', 'Thhalv10009006m.g' => 'esa', 'Thhalv10009309m.g' => 'esa', 'Thhalv10014917m.g' => 'esa', 'Thhalv10014919m.g' => 'esa', 'Thhalv10015393m.g' => 'esa', 'Thhalv10016515m.g' => 'esa', 'Thhalv10029242m.g' => 'esa', 'TPR.G16654' => 'tpr', 'TPR.G20589' => 'tpr', 'TPR.G23029' => 'tpr', 'TPR.G27731' => 'tpr', 'TPR.G28889' => 'tpr', 'TPR.G28899' => 'tpr', 'TPR.G30846' => 'tpr', 'TPR.G5452' => 'tpr', 'TPR.G5713' => 'tpr', 'TPR.G9046' => 'tpr', 'TPR.G9061' => 'tpr', 'TWI09G1075' => 'twi', 'TWI12G0806' => 'twi', 'TWI18G0108' => 'twi', 'TWI53G1361' => 'twi', 'TWI73G0185' => 'twi', 'TWI73G0427' => 'twi', 'unitig_37.g12001' => 'ugi', 'unitig_747.g21660' => 'ugi', 'unitig_748.g7232' => 'ugi', 'unitig_748.g7315' => 'ugi', 'unitig_85.g27262' => 'ugi', 'unitig_92.g28220' => 'ugi', 'vmacro02632' => 'vma', 'vmacro08410' => 'vma', 'vmacro08411' => 'vma', 'vmacro15407' => 'vma', 'VMungo0251G3619' => 'vmu', 'VMungo0720G1204' => 'vmu', 'VMungo0720G1918' => 'vmu', 'VMungo0720G2387' => 'vmu', 'VMungo0720G2961' => 'vmu', 'VMungo1215G2154' => 'vmu', 'VMungo1383G2411' => 'vmu', 'Zm00001eb051130' => 'zma', 'Zm00001eb116830' => 'zma', 'Zm00001eb116850' => 'zma', 'Zm00001eb151740' => 'zma', 'Zm00001eb292360' => 'zma', 'Zm00001eb301640' => 'zma' ) $gf_id = 'HOM05D000856' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000856' ) $data_identifier = 'HOM05D000856' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 13, 'ath' => (int) 10, 'atr' => (int) 1, 'acertr' => (int) 8, 'cqu' => (int) 6, 'bca' => (int) 21, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 11, 'car' => (int) 9, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 8, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 5, 'fan' => (int) 16, 'fve' => (int) 6, 'gma' => (int) 11, 'ghi' => (int) 19, 'gra' => (int) 9, 'vvi' => (int) 7, 'han' => (int) 17, 'cav' => (int) 5, 'hma' => (int) 2, 'vpl' => (int) 2, 'sun' => (int) 7, 'lal' => (int) 9, 'lja' => (int) 5, 'lonja' => (int) 9, 'lsa' => (int) 5, 'mes' => (int) 8, 'mpo' => (int) 3, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 10, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 15, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 9, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 9, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 6, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 5, 'spa' => (int) 10, 'tar' => (int) 10, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 11, 'tpr' => (int) 11, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 4, 'vmu' => (int) 7, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb301640' $species_info = array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ) $local_species = 'pgr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000856', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p00010' => 'bna', 'A03p04160' => 'bna', 'A03p17160' => 'bna', 'A04p23370' => 'bna', 'A05p14860' => 'bna', 'A08p37020' => 'bna', 'A09p08050' => 'bna', 'A09p66800' => 'bna', 'A09p67940' => 'bna', 'A10p02680' => 'bna', 'A10p05320' => 'bna', 'Aa31LG1G20560' => 'aar', 'Aa31LG1G20610' => 'aar', 'Aa31LG1G7810' => 'aar', 'Aa31LG5G3590' => 'aar', 'Aa31LG5G6140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3819' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4683' => 'aag', 'Actinidia04480' => 'ach', 'Actinidia05466' => 'ach', 'Actinidia08445' => 'ach', 'Actinidia21170' => 'ach', 'Actinidia24812' => 'ach', 'Actinidia24951' => 'ach', 'Actinidia40088' => 'ach', 'Ah.02g111660' => 'amhyb', 'Ah.11g048900' => 'amhyb', 'Ah.11g049910' => 'amhyb', 'AL1G13870' => 'aly', 'AL1G13880' => 'aly', 'AL1G16760' => 'aly', 'AL390U10020' => 'aly', 'AL4G25520' => 'aly', 'AL6G19890' => 'aly', 'AL6G19900' => 'aly', 'AL6G19910' => 'aly', 'AL8G40100' => 'aly', 'Aqoxy2G03562' => 'aox', 'Aqoxy5G00316' => 'aox', 'Aqoxy5G00926' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1628KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1H403S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2FU6SJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.882I6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8YRY2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YN1SN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AF70II' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZA8L1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F916KL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHRD8H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KTZ8QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S22EMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8M29T' => 'arhy', 'AT1G04270' => 'ath', 'AT1G04280' => 'ath', 'AT1G06750' => 'ath', 'AT1G33850' => 'ath', 'AT2G30630' => 'ath', 'AT5G09490' => 'ath', 'AT5G09500' => 'ath', 'AT5G09510' => 'ath', 'AT5G43640' => 'ath', 'AT5G63070' => 'ath', 'ATR0605G315' => 'atr', 'Atru.chr11.175' => 'acertr', 'Atru.chr11.653' => 'acertr', 'Atru.chr3.1616' => 'acertr', 'Atru.chr4.2230' => 'acertr', 'Atru.chr4.2232' => 'acertr', 'Atru.chr5.1598' => 'acertr', 'Atru.chr5.1600' => 'acertr', 'Atru.chr5.2188' => 'acertr', 'AUR62008326' => 'cqu', 'AUR62011922' => 'cqu', 'AUR62011924' => 'cqu', 'AUR62021771' => 'cqu', 'AUR62032237' => 'cqu', 'AUR62032240' => 'cqu', 'BcaB01g05572' => 'bca', 'BcaB02g10337' => 'bca', 'BcaB04g19944' => 'bca', 'BcaB05g21548' => 'bca', 'BcaB05g21549' => 'bca', 'BcaB05g23227' => 'bca', 'BcaB06g26256' => 'bca', 'BcaB06g26257' => 'bca', 'BcaB06g28379' => 'bca', 'BcaC02g11159' => 'bca', 'BcaC03g13258' => 'bca', 'BcaC03g13259' => 'bca', 'BcaC05g24456' => 'bca', 'BcaC05g24457' => 'bca', 'BcaC07g36922' => 'bca', 'BcaC07g36923' => 'bca', 'BcaC07g42050' => 'bca', 'BcaC07g42176' => 'bca', 'BcaC07g42195' => 'bca', 'BcaC07g42196' => 'bca', 'BcaNung06674' => 'bca', 'BolC2t06351H' => 'bol', 'BolC2t06352H' => 'bol', 'BolC3t12993H' => 'bol', 'BolC4t23525H' => 'bol', 'BolC4t27475H' => 'bol', 'BolC5t29025H' => 'bol', 'BolC5t29026H' => 'bol', 'BolC8t46898H' => 'bol', 'BolC8t46899H' => 'bol', 'BolC8t52630H' => 'bol', 'BolC8t52765H' => 'bol', 'BolC9t53824H' => 'bol', 'BraA03t09760Z' => 'bra', 'BraA03t10990Z' => 'bra', 'BraA05t20413Z' => 'bra', 'BraA08t35602Z' => 'bra', 'BraA09t36458Z' => 'bra', 'BraA09t42018Z' => 'bra', 'BraA09t42129Z' => 'bra', 'BraA10t42536Z' => 'bra', 'BraA10t42537Z' => 'bra', 'C01p10690' => 'bna', 'C02p03890' => 'bna', 'C02p03900' => 'bna', 'C03p04620' => 'bna', 'C04p19870' => 'bna', 'C04p59670' => 'bna', 'C05p02460' => 'bna', 'C05p02470' => 'bna', 'C08p00980' => 'bna', 'C08p00990' => 'bna', 'C08p51030' => 'bna', 'C08p52360' => 'bna', 'C09p09120' => 'bna', 'CAN.G19.15' => 'can', 'CAN.G251.10' => 'can', 'CAN.G251.9' => 'can', 'CAN.G398.24' => 'can', 'CAN.G410.32' => 'can', 'CAN.G881.2' => 'can', 'CANSAT01G3025' => 'cansat', 'CANSAT78G1211' => 'cansat', 'CANSAT78G1218' => 'cansat', 'CANSAT78G1521' => 'cansat', 'CANSAT78G1670' => 'cansat', 'CARHR003600' => 'chi', 'CARHR003610' => 'chi', 'CARHR006290' => 'chi', 'CARHR006430' => 'chi', 'CARHR124110' => 'chi', 'CARHR203870' => 'chi', 'CARHR203880' => 'chi', 'CARHR203890' => 'chi', 'CARHR276880' => 'chi', 'Carub.0001s0346' => 'cru', 'Carub.0001s0347' => 'cru', 'Carub.0001s0607' => 'cru', 'Carub.0003s2768' => 'cru', 'Carub.0003s2769' => 'cru', 'Carub.0004s1178' => 'cru', 'Carub.0006s0806' => 'cru', 'Carub.0006s0807' => 'cru', 'Carub.0006s0808' => 'cru', 'Carub.0008s0501' => 'cru', 'Carub.0008s2379' => 'cru', 'Ca_08655_v3' => 'car', 'Ca_08922_v3' => 'car', 'Ca_08923_v3' => 'car', 'Ca_09119_v3' => 'car', 'Ca_09703_v3' => 'car', 'Ca_09705_v3' => 'car', 'Ca_09835_v3' => 'car', 'Ca_26403_v3' => 'car', 'Ca_30719_v3' => 'car', 'CBR_g17958' => 'cbr', 'CBR_g40516' => 'cbr', 'Cc00_g05350' => 'ccan', 'Cc01_g18690' => 'ccan', 'Cc03_g04830' => 'ccan', 'Cc03_g04850' => 'ccan', 'CDE02G4469' => 'cde', 'CDE06G0883' => 'cde', 'CDE06G1295' => 'cde', 'CDE06G1390' => 'cde', 'CDE07G0584' => 'cde', 'CDE07G1084' => 'cde', 'CDE08G1259' => 'cde', 'Cfa002341' => 'cfa', 'Cfa024337' => 'cfa', 'Ciclev10004749m.g' => 'ccl', 'Ciclev10006127m.g' => 'ccl', 'Ciclev10019720m.g' => 'ccl', 'Ciclev10022652m.g' => 'ccl', 'CiPaw.01G190400' => 'cil', 'CiPaw.01G190500' => 'cil', 'CiPaw.02G116400' => 'cil', 'CiPaw.02G116500' => 'cil', 'CiPaw.04G183000' => 'cil', 'CiPaw.04G183300' => 'cil', 'ClCG05G004610' => 'cla', 'ClCG05G004620' => 'cla', 'ClCG06G006730' => 'cla', 'ClCG06G006740' => 'cla', 'ClCG11G003690' => 'cla', 'COL.COLO4_08276' => 'col', 'COL.COLO4_08277' => 'col', 'COL.COLO4_15787' => 'col', 'COL.COLO4_15789' => 'col', 'Cpa.g.c44815' => 'cpa', 'Cpa.g.sc52.144' => 'cpa', 'Cpa.g.sc58.46' => 'cpa', 'Cpa.g.sc58.47' => 'cpa', 'Cre08.g360900' => 'cre', 'CsaV3_2G013030' => 'csa', 'CsaV3_2G013050' => 'csa', 'CsaV3_2G015620' => 'csa', 'CsaV3_3G012590' => 'csa', 'CsaV3_3G012600' => 'csa', 'CSS0001641' => 'camsi', 'CSS0008310' => 'camsi', 'CSS0013011' => 'camsi', 'CSS0017147' => 'camsi', 'CSS0022970' => 'camsi', 'CSS0025655' => 'camsi', 'CSS0028665' => 'camsi', 'CSS0029117' => 'camsi', 'CSS0032024' => 'camsi', 'CSS0039681' => 'camsi', 'CSS0046516' => 'camsi', 'CSS0050307' => 'camsi', 'DCAR_005871' => 'dca', 'DCAR_007342' => 'dca', 'DCAR_024228' => 'dca', 'DCAR_027277' => 'dca', 'DCAR_030718' => 'dca', 'Dinv20287' => 'din', 'Dinv22461' => 'din', 'Dinv22464' => 'din', 'Dinv29912' => 'din', 'Dinv29913' => 'din', 'Dinv34580' => 'din', 'Dinv34582' => 'din', 'Dinv44632' => 'din', 'Duzib052G0266' => 'dzi', 'Duzib133G0907' => 'dzi', 'Duzib133G1034' => 'dzi', 'Duzib138G0207' => 'dzi', 'Duzib138G0491' => 'dzi', 'Duzib151G0812' => 'dzi', 'Duzib151G1166' => 'dzi', 'Duzib168G0192' => 'dzi', 'Duzib211G0077' => 'dzi', 'Duzib212G0429' => 'dzi', 'Duzib212G0472' => 'dzi', 'ECA233G2617' => 'eca', 'ECA236G4188' => 'eca', 'ECA240G0936' => 'eca', 'ECA240G1129' => 'eca', 'ECA247G0623' => 'eca', 'EL10Ac5g10451' => 'bvu', 'EL10Ac5g10453' => 'bvu', 'EL10Ac5g10894' => 'bvu', 'Eucgr.H00192' => 'egr', 'Eucgr.H00193' => 'egr', 'Eucgr.H00194' => 'egr', 'Eucgr.J01562' => 'egr', 'Eucgr.K03301' => 'egr', 'FAN02G0632' => 'fan', 'FAN05G5378' => 'fan', 'FAN09G3247' => 'fan', 'FAN12G0435' => 'fan', 'FAN12G2426' => 'fan', 'FAN14G1707' => 'fan', 'FAN14G4725' => 'fan', 'FAN15G2071' => 'fan', 'FAN17G3065' => 'fan', 'FAN19G1376' => 'fan', 'FAN20G0354' => 'fan', 'FAN20G2429' => 'fan', 'FAN20G2658' => 'fan', 'FAN24G2343' => 'fan', 'FAN27G2362' => 'fan', 'FAN28G1765' => 'fan', 'FvH4_1g16020' => 'fve', 'FvH4_2g04890' => 'fve', 'FvH4_2g22270' => 'fve', 'FvH4_4g02630' => 'fve', 'FvH4_4g02640' => 'fve', 'FvH4_6g02650' => 'fve', 'Glyma.02G140600' => 'gma', 'Glyma.03G159900' => 'gma', 'Glyma.05G234800' => 'gma', 'Glyma.07G269600' => 'gma', 'Glyma.08G042300' => 'gma', 'Glyma.10G033500' => 'gma', 'Glyma.10G185200' => 'gma', 'Glyma.17G004300' => 'gma', 'Glyma.19G161900' => 'gma', 'Glyma.20G205100' => 'gma', 'Glyma.20G205200' => 'gma', 'Gohir.A01G139101' => 'ghi', 'Gohir.A02G035600' => 'ghi', 'Gohir.A02G117901' => 'ghi', 'Gohir.A07G210100' => 'ghi', 'Gohir.A07G210200' => 'ghi', 'Gohir.A08G061100' => 'ghi', 'Gohir.A09G223000' => 'ghi', 'Gohir.A09G223100' => 'ghi', 'Gohir.A10G113900' => 'ghi', 'Gohir.A10G114000' => 'ghi', 'Gohir.D02G042300' => 'ghi', 'Gohir.D07G216100' => 'ghi', 'Gohir.D07G216200' => 'ghi', 'Gohir.D08G070400' => 'ghi', 'Gohir.D09G225000' => 'ghi', 'Gohir.D09G225100' => 'ghi', 'Gohir.D10G152300' => 'ghi', 'Gohir.D10G153200' => 'ghi', 'Gohir.D11G133701' => 'ghi', 'Gorai.004G074100' => 'gra', 'Gorai.005G046800' => 'gra', 'Gorai.006G246500' => 'gra', 'Gorai.006G246600' => 'gra', 'Gorai.007G142900' => 'gra', 'Gorai.011G171000' => 'gra', 'Gorai.011G171100' => 'gra', 'Gorai.013G104300' => 'gra', 'Gorai.013G104400' => 'gra', 'GSVIVG01000754001' => 'vvi', 'GSVIVG01000756001' => 'vvi', 'GSVIVG01010903001' => 'vvi', 'GSVIVG01017623001' => 'vvi', 'GSVIVG01018113001' => 'vvi', 'GSVIVG01018116001' => 'vvi', 'GSVIVG01018118001' => 'vvi', 'HanXRQChr03g0076211' => 'han', 'HanXRQChr03g0092431' => 'han', 'HanXRQChr03g0092441' => 'han', 'HanXRQChr03g0092591' => 'han', 'HanXRQChr03g0092671' => 'han', 'HanXRQChr03g0092681' => 'han', 'HanXRQChr03g0092691' => 'han', 'HanXRQChr03g0092701' => 'han', 'HanXRQChr03g0092721' => 'han', 'HanXRQChr03g0092731' => 'han', 'HanXRQChr04g0113681' => 'han', 'HanXRQChr10g0281371' => 'han', 'HanXRQChr11g0337141' => 'han', 'HanXRQChr13g0424521' => 'han', 'HanXRQChr13g0424531' => 'han', 'HanXRQChr13g0424541' => 'han', 'HanXRQChr16g0498221' => 'han', 'Haze_04377' => 'cav', 'Haze_11298' => 'cav', 'Haze_24547' => 'cav', 'Haze_24550' => 'cav', 'Haze_26587' => 'cav', 'Hma1.2p1_0650F.1_g195410' => 'hma', 'Hma1.2p1_0893F.1_g233470' => 'hma', 'HPP92_006508' => 'vpl', 'HPP92_024780' => 'vpl', 'Hund02688' => 'sun', 'Hund09380' => 'sun', 'Hund09381' => 'sun', 'Hund09832' => 'sun', 'Hund09833' => 'sun', 'Hund11351' => 'sun', 'Hund11513' => 'sun', 'Lalb_Chr06g0162591' => 'lal', 'Lalb_Chr06g0162601' => 'lal', 'Lalb_Chr06g0169321' => 'lal', 'Lalb_Chr09g0330951' => 'lal', 'Lalb_Chr16g0387631' => 'lal', 'Lalb_Chr21g0306241' => 'lal', 'Lalb_Chr25g0290051' => 'lal', 'Lalb_Chr25g0290061' => 'lal', 'Lalb_Chr25g0290071' => 'lal', 'Lj1g0003876' => 'lja', 'Lj1P1207T36' => 'lonja', 'Lj2C1156G12' => 'lonja', 'Lj3A793G39' => 'lonja', 'Lj3C580G2' => 'lonja', 'Lj3C780G2' => 'lonja', 'Lj3C780T4' => 'lonja', 'Lj3C793G9' => 'lonja', 'Lj4g0012960' => 'lja', 'Lj5g0021252' => 'lja', 'Lj5g0021484' => 'lja', 'Lj5g0024528' => 'lja', 'Lj6A399T12' => 'lonja', 'Lj6A656G65' => 'lonja', 'Lsat_1_v5_gn_3_125500' => 'lsa', 'Lsat_1_v5_gn_3_125540' => 'lsa', 'Lsat_1_v5_gn_5_72701' => 'lsa', 'Lsat_1_v5_gn_8_91560' => 'lsa', 'Lsat_1_v5_gn_9_9640' => 'lsa', 'Manes.01G200600' => 'mes', 'Manes.01G200700' => 'mes', 'Manes.03G168900' => 'mes', 'Manes.03G169000' => 'mes', 'Manes.05G085801' => 'mes', 'Manes.05G086200' => 'mes', 'Manes.15G036700' => 'mes', 'Manes.15G036900' => 'mes', 'Mapoly0004s0172' => 'mpo', 'Mapoly0023s0001' => 'mpo', 'Mapoly0142s0012' => 'mpo', 'MBI01_g32854_MAGBIO' => 'mbi', 'MBI11_g24427_MAGBIO' => 'mbi', 'MBI11_g47319_MAGBIO' => 'mbi', 'MCO01G433' => 'mco', 'MD00G1187800' => 'mdo', 'MD04G1226500' => 'mdo', 'MD05G1203900' => 'mdo', 'MD10G1191100' => 'mdo', 'MD12G1243500' => 'mdo', 'MD13G1207000' => 'mdo', 'MD13G1207100' => 'mdo', 'MD16G1208600' => 'mdo', 'Medtr1g050352' => 'mtr', 'Medtr1g070385' => 'mtr', 'Medtr1g070450' => 'mtr', 'Medtr1g075200' => 'mtr', 'Medtr1g075250' => 'mtr', 'Medtr1g075260' => 'mtr', 'Medtr1g475250' => 'mtr', 'Medtr4g075450' => 'mtr', 'Medtr7g096300' => 'mtr', 'Medtr8g105110' => 'mtr', 'MELO3C006470.2' => 'cme', 'MELO3C006471.2' => 'cme', 'MELO3C020772.2' => 'cme', 'MELO3C026780.2' => 'cme', 'MELO3C026781.2' => 'cme', 'Migut.D00390' => 'egut', 'Migut.G00435' => 'egut', 'Migut.G00436' => 'egut', 'Migut.G00718' => 'egut', 'MSTRG.21891' => 'ama', 'MSTRG.26910' => 'ama', 'MSTRG.4099' => 'ama', 'MSTRG.9925' => 'ama', 'Nitab4.5_0000165g0010' => 'nta', 'Nitab4.5_0000209g0180' => 'nta', 'Nitab4.5_0000244g0440' => 'nta', 'Nitab4.5_0000525g0220' => 'nta', 'Nitab4.5_0001597g0020' => 'nta', 'Nitab4.5_0001878g0040' => 'nta', 'Nitab4.5_0001878g0060' => 'nta', 'Nitab4.5_0002838g0100' => 'nta', 'Nitab4.5_0002838g0120' => 'nta', 'Nitab4.5_0004798g0030' => 'nta', 'Nitab4.5_0005420g0010' => 'nta', 'Nitab4.5_0005507g0010' => 'nta', 'Nitab4.5_0005574g0020' => 'nta', 'Nitab4.5_0005838g0010' => 'nta', 'Nitab4.5_0010580g0020' => 'nta', 'Nn1g02599' => 'nnu', 'Nn1g02608' => 'nnu', 'Nn3g17742' => 'nnu', 'Nn3g19534' => 'nnu', 'Nn3g19535' => 'nnu', 'Oeu008790.1' => 'oeu', 'Oeu008792.1' => 'oeu', 'Oeu032590.1' => 'oeu', 'Oeu035349.1' => 'oeu', 'Oeu049791.1' => 'oeu', 'Os01g0774500' => 'osa', 'Os03g0628800' => 'osa', 'Os03g0798600' => 'osa', 'Os05g0508800' => 'osa', 'Peaxi162Scf00036g02018' => 'pax', 'Peaxi162Scf00578g00032' => 'pax', 'Peaxi162Scf00578g00317' => 'pax', 'Peaxi162Scf00785g00114' => 'pax', 'Peaxi162Scf00813g00119' => 'pax', 'Peaxi162Scf00906g00227' => 'pax', 'PGR004G0875' => 'pgr', 'PGR004G2424' => 'pgr', 'PGR031G1239' => 'pgr', 'PGR031G2474' => 'pgr', 'PGR044G0423' => 'pgr', 'PGSC0003DMG400001128' => 'stu', 'PGSC0003DMG400007336' => 'stu', 'PGSC0003DMG400016318' => 'stu', 'PGSC0003DMG400016319' => 'stu', 'PGSC0003DMG400018074' => 'stu', 'Phvul.001G157700' => 'pvu', 'Phvul.002G148550' => 'pvu', 'Phvul.002G320200' => 'pvu', 'Phvul.003G089200' => 'pvu', 'Phvul.007G126000' => 'pvu', 'Phvul.007G126100' => 'pvu', 'Phvul.007G178000' => 'pvu', 'Phvul.007G178200' => 'pvu', 'Potri.002G043000' => 'ptr', 'Potri.002G043200' => 'ptr', 'Potri.003G123750' => 'ptr', 'Potri.005G055401' => 'ptr', 'Potri.005G219700' => 'ptr', 'Potri.005G220000' => 'ptr', 'Potri.008G161901' => 'ptr', 'Potri.008G162000' => 'ptr', 'Potri.008G162400' => 'ptr', 'Potri.010G076900' => 'ptr', 'Pp3c12_9180' => 'ppa', 'Pp3c13_19770' => 'ppa', 'Pp3c14_22950' => 'ppa', 'Pp3c16_12160' => 'ppa', 'Pp3c27_7820' => 'ppa', 'Pp3c2_3490' => 'ppa', 'Pp3c3_23700' => 'ppa', 'Pp3c3_36520' => 'ppa', 'Pp3c4_15250' => 'ppa', 'PRCOL_00007002' => 'pco', 'Prupe.1G030600' => 'ppe', 'Prupe.1G030700' => 'ppe', 'Prupe.6G345200' => 'ppe', 'Prupe.8G230300' => 'ppe', 'Prupe.8G230500' => 'ppe', 'Psat3g059600' => 'psa', 'Psat5g200920' => 'psa', 'Psat6g056440' => 'psa', 'Psat6g057360' => 'psa', 'Psat6g134120' => 'psa', 'Psat6g134160' => 'psa', 'Psat7g008640' => 'psa', 'Psat7g185240' => 'psa', 'PSO017G1330' => 'pso', 'PSO063G6097' => 'pso', 'PSO170G0835' => 'pso', 'PSO170G2499' => 'pso', 'PSO210G5058' => 'pso', 'PSO210G6154' => 'pso', 'PSO585G0031' => 'pso', 'PSO832G0264' => 'pso', 'PSO832G4288' => 'pso', 'QL03p027355' => 'qlo', 'QL03p027430' => 'qlo', 'QL04p081380' => 'qlo', 'QL06p015642' => 'qlo', 'QL06p015650' => 'qlo', 'QL06p015686' => 'qlo', 'QL12p042927' => 'qlo', 'QL93p1863_0035' => 'qlo', 'RcHm_v2.0_Chr3g0450581' => 'rch', 'RcHm_v2.0_Chr4g0390371' => 'rch', 'RcHm_v2.0_Chr4g0390381' => 'rch', 'RcHm_v2.0_Chr4g0390491' => 'rch', 'RcHm_v2.0_Chr4g0390501' => 'rch', 'RcHm_v2.0_Chr6g0289231' => 'rch', 'Rhsim04G0190400' => 'rsi', 'Rhsim04G0190500' => 'rsi', 'Rhsim04G0190600' => 'rsi', 'Rhsim13G0031400' => 'rsi', 'Rhsim13G0165600' => 'rsi', 'RhsimUnG0114600' => 'rsi', 'RhsimUnG0114700' => 'rsi', 'Sabra02G0034800' => 'sbr', 'Sabra02G0035100' => 'sbr', 'Sabra05G0168600' => 'sbr', 'Sabra05G0168800' => 'sbr', 'Sabra08G0123700' => 'sbr', 'Sabra10G0031900' => 'sbr', 'Sabra13G0039000' => 'sbr', 'SalBow2G0782' => 'sbo', 'SalBow2G1403' => 'sbo', 'SalBow4G0074' => 'sbo', 'SalBow4G2635' => 'sbo', 'SalBow5G3010' => 'sbo', 'Sc05g0000870' => 'sci', 'Sc05g0000890' => 'sci', 'Sc13g0005000' => 'sci', 'Sc13g0005030' => 'sci', 'Sc19g0003790' => 'sci', 'Sc19g0003800' => 'sci', 'Sed0003467' => 'sed', 'Sed0009355' => 'sed', 'Sed0009894' => 'sed', 'Sed0011972' => 'sed', 'Sed0021483' => 'sed', 'Sed0021750' => 'sed', 'Sed0026279' => 'sed', 'SEGI_05312' => 'sgi', 'SEGI_10112' => 'sgi', 'SEGI_15835' => 'sgi', 'SEGI_30386' => 'sgi', 'SEGI_34122' => 'sgi', 'SEGI_35063' => 'sgi', 'SGA_v2.0_scaffold101G29794' => 'sas', 'SGA_v2.0_scaffold1G00573' => 'sas', 'SGA_v2.0_scaffold79G25637' => 'sas', 'SGA_v2.0_scaffold88G27283' => 'sas', 'SGA_v2.0_scaffold88G27285' => 'sas', 'SGA_v2.0_scaffold88G27331' => 'sas', 'SHI09937' => 'shi', 'SMO119G0302' => 'smo', 'SMO137G0231' => 'smo', 'SMO367G1151' => 'smo', 'Solyc02g082000.3' => 'sly', 'Solyc06g031670.3' => 'sly', 'Solyc06g053810.3' => 'sly', 'Solyc07g025457.1' => 'sly', 'Solyc08g059740.1' => 'sly', 'Solyc08g059750.3' => 'sly', 'Solyc09g083370.3' => 'sly', 'Solyc12g038950.3' => 'sly', 'Sopen02g026630' => 'spe', 'Sopen06g018930' => 'spe', 'Sopen06g018940' => 'spe', 'Sopen08g009460' => 'spe', 'Sopen09g032290' => 'spe', 'Sp1g03080' => 'spa', 'Sp1g03090' => 'spa', 'Sp1g05480' => 'spa', 'Sp2g07860' => 'spa', 'Sp2g08430' => 'spa', 'Sp2g08440' => 'spa', 'Sp2g26200' => 'spa', 'Sp4g13170' => 'spa', 'Sp6g33840' => 'spa', 'SpUn1204_0010' => 'spa', 'TAR365G0908' => 'tar', 'TAR381G1270' => 'tar', 'TAR381G1651' => 'tar', 'TAR625G1131' => 'tar', 'TAR633G0962' => 'tar', 'TAR633G1729' => 'tar', 'TAR633G1864' => 'tar', 'TAR636G0221' => 'tar', 'TAR636G0314' => 'tar', 'TAR636G3202' => 'tar', 'THA.LOC104800805' => 'tha', 'THA.LOC104801096' => 'tha', 'THA.LOC104801555' => 'tha', 'THA.LOC104808491' => 'tha', 'THA.LOC104808595' => 'tha', 'THA.LOC104815985' => 'tha', 'THA.LOC104822250' => 'tha', 'THA.LOC104826071' => 'tha', 'Thecc.01G265200' => 'tca', 'Thecc.01G265300' => 'tca', 'Thecc.01G265700' => 'tca', 'Thecc.03G109100' => 'tca', 'Thecc.04G245900' => 'tca', 'Thecc.04G246000' => 'tca', 'Thhalv10003334m.g' => 'esa', 'Thhalv10005508m.g' => 'esa', 'Thhalv10005643m.g' => 'esa', 'Thhalv10007316m.g' => 'esa', 'Thhalv10009006m.g' => 'esa', 'Thhalv10009309m.g' => 'esa', 'Thhalv10014917m.g' => 'esa', 'Thhalv10014919m.g' => 'esa', 'Thhalv10015393m.g' => 'esa', 'Thhalv10016515m.g' => 'esa', 'Thhalv10029242m.g' => 'esa', 'TPR.G16654' => 'tpr', 'TPR.G20589' => 'tpr', 'TPR.G23029' => 'tpr', 'TPR.G27731' => 'tpr', 'TPR.G28889' => 'tpr', 'TPR.G28899' => 'tpr', 'TPR.G30846' => 'tpr', 'TPR.G5452' => 'tpr', 'TPR.G5713' => 'tpr', 'TPR.G9046' => 'tpr', 'TPR.G9061' => 'tpr', 'TWI09G1075' => 'twi', 'TWI12G0806' => 'twi', 'TWI18G0108' => 'twi', 'TWI53G1361' => 'twi', 'TWI73G0185' => 'twi', 'TWI73G0427' => 'twi', 'unitig_37.g12001' => 'ugi', 'unitig_747.g21660' => 'ugi', 'unitig_748.g7232' => 'ugi', 'unitig_748.g7315' => 'ugi', 'unitig_85.g27262' => 'ugi', 'unitig_92.g28220' => 'ugi', 'vmacro02632' => 'vma', 'vmacro08410' => 'vma', 'vmacro08411' => 'vma', 'vmacro15407' => 'vma', 'VMungo0251G3619' => 'vmu', 'VMungo0720G1204' => 'vmu', 'VMungo0720G1918' => 'vmu', 'VMungo0720G2387' => 'vmu', 'VMungo0720G2961' => 'vmu', 'VMungo1215G2154' => 'vmu', 'VMungo1383G2411' => 'vmu', 'Zm00001eb051130' => 'zma', 'Zm00001eb116830' => 'zma', 'Zm00001eb116850' => 'zma', 'Zm00001eb151740' => 'zma', 'Zm00001eb292360' => 'zma', 'Zm00001eb301640' => 'zma' ), 'gf_id' => 'HOM05D000856', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000856' ), 'data_identifier' => 'HOM05D000856', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000856', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p00010' => 'bna', 'A03p04160' => 'bna', 'A03p17160' => 'bna', 'A04p23370' => 'bna', 'A05p14860' => 'bna', 'A08p37020' => 'bna', 'A09p08050' => 'bna', 'A09p66800' => 'bna', 'A09p67940' => 'bna', 'A10p02680' => 'bna', 'A10p05320' => 'bna', 'Aa31LG1G20560' => 'aar', 'Aa31LG1G20610' => 'aar', 'Aa31LG1G7810' => 'aar', 'Aa31LG5G3590' => 'aar', 'Aa31LG5G6140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3819' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4683' => 'aag', 'Actinidia04480' => 'ach', 'Actinidia05466' => 'ach', 'Actinidia08445' => 'ach', 'Actinidia21170' => 'ach', 'Actinidia24812' => 'ach', 'Actinidia24951' => 'ach', 'Actinidia40088' => 'ach', 'Ah.02g111660' => 'amhyb', 'Ah.11g048900' => 'amhyb', 'Ah.11g049910' => 'amhyb', 'AL1G13870' => 'aly', 'AL1G13880' => 'aly', 'AL1G16760' => 'aly', 'AL390U10020' => 'aly', 'AL4G25520' => 'aly', 'AL6G19890' => 'aly', 'AL6G19900' => 'aly', 'AL6G19910' => 'aly', 'AL8G40100' => 'aly', 'Aqoxy2G03562' => 'aox', 'Aqoxy5G00316' => 'aox', 'Aqoxy5G00926' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1628KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1H403S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2FU6SJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.882I6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8YRY2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YN1SN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AF70II' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZA8L1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F916KL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHRD8H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KTZ8QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S22EMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8M29T' => 'arhy', 'AT1G04270' => 'ath', 'AT1G04280' => 'ath', 'AT1G06750' => 'ath', 'AT1G33850' => 'ath', 'AT2G30630' => 'ath', 'AT5G09490' => 'ath', 'AT5G09500' => 'ath', 'AT5G09510' => 'ath', 'AT5G43640' => 'ath', 'AT5G63070' => 'ath', 'ATR0605G315' => 'atr', 'Atru.chr11.175' => 'acertr', 'Atru.chr11.653' => 'acertr', 'Atru.chr3.1616' => 'acertr', 'Atru.chr4.2230' => 'acertr', 'Atru.chr4.2232' => 'acertr', 'Atru.chr5.1598' => 'acertr', 'Atru.chr5.1600' => 'acertr', 'Atru.chr5.2188' => 'acertr', 'AUR62008326' => 'cqu', 'AUR62011922' => 'cqu', 'AUR62011924' => 'cqu', 'AUR62021771' => 'cqu', 'AUR62032237' => 'cqu', 'AUR62032240' => 'cqu', 'BcaB01g05572' => 'bca', 'BcaB02g10337' => 'bca', 'BcaB04g19944' => 'bca', 'BcaB05g21548' => 'bca', 'BcaB05g21549' => 'bca', 'BcaB05g23227' => 'bca', 'BcaB06g26256' => 'bca', 'BcaB06g26257' => 'bca', 'BcaB06g28379' => 'bca', 'BcaC02g11159' => 'bca', 'BcaC03g13258' => 'bca', 'BcaC03g13259' => 'bca', 'BcaC05g24456' => 'bca', 'BcaC05g24457' => 'bca', 'BcaC07g36922' => 'bca', 'BcaC07g36923' => 'bca', 'BcaC07g42050' => 'bca', 'BcaC07g42176' => 'bca', 'BcaC07g42195' => 'bca', 'BcaC07g42196' => 'bca', 'BcaNung06674' => 'bca', 'BolC2t06351H' => 'bol', 'BolC2t06352H' => 'bol', 'BolC3t12993H' => 'bol', 'BolC4t23525H' => 'bol', 'BolC4t27475H' => 'bol', 'BolC5t29025H' => 'bol', 'BolC5t29026H' => 'bol', 'BolC8t46898H' => 'bol', 'BolC8t46899H' => 'bol', 'BolC8t52630H' => 'bol', 'BolC8t52765H' => 'bol', 'BolC9t53824H' => 'bol', 'BraA03t09760Z' => 'bra', 'BraA03t10990Z' => 'bra', 'BraA05t20413Z' => 'bra', 'BraA08t35602Z' => 'bra', 'BraA09t36458Z' => 'bra', 'BraA09t42018Z' => 'bra', 'BraA09t42129Z' => 'bra', 'BraA10t42536Z' => 'bra', 'BraA10t42537Z' => 'bra', 'C01p10690' => 'bna', 'C02p03890' => 'bna', 'C02p03900' => 'bna', 'C03p04620' => 'bna', 'C04p19870' => 'bna', 'C04p59670' => 'bna', 'C05p02460' => 'bna', 'C05p02470' => 'bna', 'C08p00980' => 'bna', 'C08p00990' => 'bna', 'C08p51030' => 'bna', 'C08p52360' => 'bna', 'C09p09120' => 'bna', 'CAN.G19.15' => 'can', 'CAN.G251.10' => 'can', 'CAN.G251.9' => 'can', 'CAN.G398.24' => 'can', 'CAN.G410.32' => 'can', 'CAN.G881.2' => 'can', 'CANSAT01G3025' => 'cansat', 'CANSAT78G1211' => 'cansat', 'CANSAT78G1218' => 'cansat', 'CANSAT78G1521' => 'cansat', 'CANSAT78G1670' => 'cansat', 'CARHR003600' => 'chi', 'CARHR003610' => 'chi', 'CARHR006290' => 'chi', 'CARHR006430' => 'chi', 'CARHR124110' => 'chi', 'CARHR203870' => 'chi', 'CARHR203880' => 'chi', 'CARHR203890' => 'chi', 'CARHR276880' => 'chi', 'Carub.0001s0346' => 'cru', 'Carub.0001s0347' => 'cru', 'Carub.0001s0607' => 'cru', 'Carub.0003s2768' => 'cru', 'Carub.0003s2769' => 'cru', 'Carub.0004s1178' => 'cru', 'Carub.0006s0806' => 'cru', 'Carub.0006s0807' => 'cru', 'Carub.0006s0808' => 'cru', 'Carub.0008s0501' => 'cru', 'Carub.0008s2379' => 'cru', 'Ca_08655_v3' => 'car', 'Ca_08922_v3' => 'car', 'Ca_08923_v3' => 'car', 'Ca_09119_v3' => 'car', 'Ca_09703_v3' => 'car', 'Ca_09705_v3' => 'car', 'Ca_09835_v3' => 'car', 'Ca_26403_v3' => 'car', 'Ca_30719_v3' => 'car', 'CBR_g17958' => 'cbr', 'CBR_g40516' => 'cbr', 'Cc00_g05350' => 'ccan', 'Cc01_g18690' => 'ccan', 'Cc03_g04830' => 'ccan', 'Cc03_g04850' => 'ccan', 'CDE02G4469' => 'cde', 'CDE06G0883' => 'cde', 'CDE06G1295' => 'cde', 'CDE06G1390' => 'cde', 'CDE07G0584' => 'cde', 'CDE07G1084' => 'cde', 'CDE08G1259' => 'cde', 'Cfa002341' => 'cfa', 'Cfa024337' => 'cfa', 'Ciclev10004749m.g' => 'ccl', 'Ciclev10006127m.g' => 'ccl', 'Ciclev10019720m.g' => 'ccl', 'Ciclev10022652m.g' => 'ccl', 'CiPaw.01G190400' => 'cil', 'CiPaw.01G190500' => 'cil', 'CiPaw.02G116400' => 'cil', 'CiPaw.02G116500' => 'cil', 'CiPaw.04G183000' => 'cil', 'CiPaw.04G183300' => 'cil', 'ClCG05G004610' => 'cla', 'ClCG05G004620' => 'cla', 'ClCG06G006730' => 'cla', 'ClCG06G006740' => 'cla', 'ClCG11G003690' => 'cla', 'COL.COLO4_08276' => 'col', 'COL.COLO4_08277' => 'col', 'COL.COLO4_15787' => 'col', 'COL.COLO4_15789' => 'col', 'Cpa.g.c44815' => 'cpa', 'Cpa.g.sc52.144' => 'cpa', 'Cpa.g.sc58.46' => 'cpa', 'Cpa.g.sc58.47' => 'cpa', 'Cre08.g360900' => 'cre', 'CsaV3_2G013030' => 'csa', 'CsaV3_2G013050' => 'csa', 'CsaV3_2G015620' => 'csa', 'CsaV3_3G012590' => 'csa', 'CsaV3_3G012600' => 'csa', 'CSS0001641' => 'camsi', 'CSS0008310' => 'camsi', 'CSS0013011' => 'camsi', 'CSS0017147' => 'camsi', 'CSS0022970' => 'camsi', 'CSS0025655' => 'camsi', 'CSS0028665' => 'camsi', 'CSS0029117' => 'camsi', 'CSS0032024' => 'camsi', 'CSS0039681' => 'camsi', 'CSS0046516' => 'camsi', 'CSS0050307' => 'camsi', 'DCAR_005871' => 'dca', 'DCAR_007342' => 'dca', 'DCAR_024228' => 'dca', 'DCAR_027277' => 'dca', 'DCAR_030718' => 'dca', 'Dinv20287' => 'din', 'Dinv22461' => 'din', 'Dinv22464' => 'din', 'Dinv29912' => 'din', 'Dinv29913' => 'din', 'Dinv34580' => 'din', 'Dinv34582' => 'din', 'Dinv44632' => 'din', 'Duzib052G0266' => 'dzi', 'Duzib133G0907' => 'dzi', 'Duzib133G1034' => 'dzi', 'Duzib138G0207' => 'dzi', 'Duzib138G0491' => 'dzi', 'Duzib151G0812' => 'dzi', 'Duzib151G1166' => 'dzi', 'Duzib168G0192' => 'dzi', 'Duzib211G0077' => 'dzi', 'Duzib212G0429' => 'dzi', 'Duzib212G0472' => 'dzi', 'ECA233G2617' => 'eca', 'ECA236G4188' => 'eca', 'ECA240G0936' => 'eca', 'ECA240G1129' => 'eca', 'ECA247G0623' => 'eca', 'EL10Ac5g10451' => 'bvu', 'EL10Ac5g10453' => 'bvu', 'EL10Ac5g10894' => 'bvu', 'Eucgr.H00192' => 'egr', 'Eucgr.H00193' => 'egr', 'Eucgr.H00194' => 'egr', 'Eucgr.J01562' => 'egr', 'Eucgr.K03301' => 'egr', 'FAN02G0632' => 'fan', 'FAN05G5378' => 'fan', 'FAN09G3247' => 'fan', 'FAN12G0435' => 'fan', 'FAN12G2426' => 'fan', 'FAN14G1707' => 'fan', 'FAN14G4725' => 'fan', 'FAN15G2071' => 'fan', 'FAN17G3065' => 'fan', 'FAN19G1376' => 'fan', 'FAN20G0354' => 'fan', 'FAN20G2429' => 'fan', 'FAN20G2658' => 'fan', 'FAN24G2343' => 'fan', 'FAN27G2362' => 'fan', 'FAN28G1765' => 'fan', 'FvH4_1g16020' => 'fve', 'FvH4_2g04890' => 'fve', 'FvH4_2g22270' => 'fve', 'FvH4_4g02630' => 'fve', 'FvH4_4g02640' => 'fve', 'FvH4_6g02650' => 'fve', 'Glyma.02G140600' => 'gma', 'Glyma.03G159900' => 'gma', 'Glyma.05G234800' => 'gma', 'Glyma.07G269600' => 'gma', 'Glyma.08G042300' => 'gma', 'Glyma.10G033500' => 'gma', 'Glyma.10G185200' => 'gma', 'Glyma.17G004300' => 'gma', 'Glyma.19G161900' => 'gma', 'Glyma.20G205100' => 'gma', 'Glyma.20G205200' => 'gma', 'Gohir.A01G139101' => 'ghi', 'Gohir.A02G035600' => 'ghi', 'Gohir.A02G117901' => 'ghi', 'Gohir.A07G210100' => 'ghi', 'Gohir.A07G210200' => 'ghi', 'Gohir.A08G061100' => 'ghi', 'Gohir.A09G223000' => 'ghi', 'Gohir.A09G223100' => 'ghi', 'Gohir.A10G113900' => 'ghi', 'Gohir.A10G114000' => 'ghi', 'Gohir.D02G042300' => 'ghi', 'Gohir.D07G216100' => 'ghi', 'Gohir.D07G216200' => 'ghi', 'Gohir.D08G070400' => 'ghi', 'Gohir.D09G225000' => 'ghi', 'Gohir.D09G225100' => 'ghi', 'Gohir.D10G152300' => 'ghi', 'Gohir.D10G153200' => 'ghi', 'Gohir.D11G133701' => 'ghi', 'Gorai.004G074100' => 'gra', 'Gorai.005G046800' => 'gra', 'Gorai.006G246500' => 'gra', 'Gorai.006G246600' => 'gra', 'Gorai.007G142900' => 'gra', 'Gorai.011G171000' => 'gra', 'Gorai.011G171100' => 'gra', 'Gorai.013G104300' => 'gra', 'Gorai.013G104400' => 'gra', 'GSVIVG01000754001' => 'vvi', 'GSVIVG01000756001' => 'vvi', 'GSVIVG01010903001' => 'vvi', 'GSVIVG01017623001' => 'vvi', 'GSVIVG01018113001' => 'vvi', 'GSVIVG01018116001' => 'vvi', 'GSVIVG01018118001' => 'vvi', 'HanXRQChr03g0076211' => 'han', 'HanXRQChr03g0092431' => 'han', 'HanXRQChr03g0092441' => 'han', 'HanXRQChr03g0092591' => 'han', 'HanXRQChr03g0092671' => 'han', 'HanXRQChr03g0092681' => 'han', 'HanXRQChr03g0092691' => 'han', 'HanXRQChr03g0092701' => 'han', 'HanXRQChr03g0092721' => 'han', 'HanXRQChr03g0092731' => 'han', 'HanXRQChr04g0113681' => 'han', 'HanXRQChr10g0281371' => 'han', 'HanXRQChr11g0337141' => 'han', 'HanXRQChr13g0424521' => 'han', 'HanXRQChr13g0424531' => 'han', 'HanXRQChr13g0424541' => 'han', 'HanXRQChr16g0498221' => 'han', 'Haze_04377' => 'cav', 'Haze_11298' => 'cav', 'Haze_24547' => 'cav', 'Haze_24550' => 'cav', 'Haze_26587' => 'cav', 'Hma1.2p1_0650F.1_g195410' => 'hma', 'Hma1.2p1_0893F.1_g233470' => 'hma', 'HPP92_006508' => 'vpl', 'HPP92_024780' => 'vpl', 'Hund02688' => 'sun', 'Hund09380' => 'sun', 'Hund09381' => 'sun', 'Hund09832' => 'sun', 'Hund09833' => 'sun', 'Hund11351' => 'sun', 'Hund11513' => 'sun', 'Lalb_Chr06g0162591' => 'lal', 'Lalb_Chr06g0162601' => 'lal', 'Lalb_Chr06g0169321' => 'lal', 'Lalb_Chr09g0330951' => 'lal', 'Lalb_Chr16g0387631' => 'lal', 'Lalb_Chr21g0306241' => 'lal', 'Lalb_Chr25g0290051' => 'lal', 'Lalb_Chr25g0290061' => 'lal', 'Lalb_Chr25g0290071' => 'lal', 'Lj1g0003876' => 'lja', 'Lj1P1207T36' => 'lonja', 'Lj2C1156G12' => 'lonja', 'Lj3A793G39' => 'lonja', 'Lj3C580G2' => 'lonja', 'Lj3C780G2' => 'lonja', 'Lj3C780T4' => 'lonja', 'Lj3C793G9' => 'lonja', 'Lj4g0012960' => 'lja', 'Lj5g0021252' => 'lja', 'Lj5g0021484' => 'lja', 'Lj5g0024528' => 'lja', 'Lj6A399T12' => 'lonja', 'Lj6A656G65' => 'lonja', 'Lsat_1_v5_gn_3_125500' => 'lsa', 'Lsat_1_v5_gn_3_125540' => 'lsa', 'Lsat_1_v5_gn_5_72701' => 'lsa', 'Lsat_1_v5_gn_8_91560' => 'lsa', 'Lsat_1_v5_gn_9_9640' => 'lsa', 'Manes.01G200600' => 'mes', 'Manes.01G200700' => 'mes', 'Manes.03G168900' => 'mes', 'Manes.03G169000' => 'mes', 'Manes.05G085801' => 'mes', 'Manes.05G086200' => 'mes', 'Manes.15G036700' => 'mes', 'Manes.15G036900' => 'mes', 'Mapoly0004s0172' => 'mpo', 'Mapoly0023s0001' => 'mpo', 'Mapoly0142s0012' => 'mpo', 'MBI01_g32854_MAGBIO' => 'mbi', 'MBI11_g24427_MAGBIO' => 'mbi', 'MBI11_g47319_MAGBIO' => 'mbi', 'MCO01G433' => 'mco', 'MD00G1187800' => 'mdo', 'MD04G1226500' => 'mdo', 'MD05G1203900' => 'mdo', 'MD10G1191100' => 'mdo', 'MD12G1243500' => 'mdo', 'MD13G1207000' => 'mdo', 'MD13G1207100' => 'mdo', 'MD16G1208600' => 'mdo', 'Medtr1g050352' => 'mtr', 'Medtr1g070385' => 'mtr', 'Medtr1g070450' => 'mtr', 'Medtr1g075200' => 'mtr', 'Medtr1g075250' => 'mtr', 'Medtr1g075260' => 'mtr', 'Medtr1g475250' => 'mtr', 'Medtr4g075450' => 'mtr', 'Medtr7g096300' => 'mtr', 'Medtr8g105110' => 'mtr', 'MELO3C006470.2' => 'cme', 'MELO3C006471.2' => 'cme', 'MELO3C020772.2' => 'cme', 'MELO3C026780.2' => 'cme', 'MELO3C026781.2' => 'cme', 'Migut.D00390' => 'egut', 'Migut.G00435' => 'egut', 'Migut.G00436' => 'egut', 'Migut.G00718' => 'egut', 'MSTRG.21891' => 'ama', 'MSTRG.26910' => 'ama', 'MSTRG.4099' => 'ama', 'MSTRG.9925' => 'ama', 'Nitab4.5_0000165g0010' => 'nta', 'Nitab4.5_0000209g0180' => 'nta', 'Nitab4.5_0000244g0440' => 'nta', 'Nitab4.5_0000525g0220' => 'nta', 'Nitab4.5_0001597g0020' => 'nta', 'Nitab4.5_0001878g0040' => 'nta', 'Nitab4.5_0001878g0060' => 'nta', 'Nitab4.5_0002838g0100' => 'nta', 'Nitab4.5_0002838g0120' => 'nta', 'Nitab4.5_0004798g0030' => 'nta', 'Nitab4.5_0005420g0010' => 'nta', 'Nitab4.5_0005507g0010' => 'nta', 'Nitab4.5_0005574g0020' => 'nta', 'Nitab4.5_0005838g0010' => 'nta', 'Nitab4.5_0010580g0020' => 'nta', 'Nn1g02599' => 'nnu', 'Nn1g02608' => 'nnu', 'Nn3g17742' => 'nnu', 'Nn3g19534' => 'nnu', 'Nn3g19535' => 'nnu', 'Oeu008790.1' => 'oeu', 'Oeu008792.1' => 'oeu', 'Oeu032590.1' => 'oeu', 'Oeu035349.1' => 'oeu', 'Oeu049791.1' => 'oeu', 'Os01g0774500' => 'osa', 'Os03g0628800' => 'osa', 'Os03g0798600' => 'osa', 'Os05g0508800' => 'osa', 'Peaxi162Scf00036g02018' => 'pax', 'Peaxi162Scf00578g00032' => 'pax', 'Peaxi162Scf00578g00317' => 'pax', 'Peaxi162Scf00785g00114' => 'pax', 'Peaxi162Scf00813g00119' => 'pax', 'Peaxi162Scf00906g00227' => 'pax', 'PGR004G0875' => 'pgr', 'PGR004G2424' => 'pgr', 'PGR031G1239' => 'pgr', 'PGR031G2474' => 'pgr', 'PGR044G0423' => 'pgr', 'PGSC0003DMG400001128' => 'stu', 'PGSC0003DMG400007336' => 'stu', 'PGSC0003DMG400016318' => 'stu', 'PGSC0003DMG400016319' => 'stu', 'PGSC0003DMG400018074' => 'stu', 'Phvul.001G157700' => 'pvu', 'Phvul.002G148550' => 'pvu', 'Phvul.002G320200' => 'pvu', 'Phvul.003G089200' => 'pvu', 'Phvul.007G126000' => 'pvu', 'Phvul.007G126100' => 'pvu', 'Phvul.007G178000' => 'pvu', 'Phvul.007G178200' => 'pvu', 'Potri.002G043000' => 'ptr', 'Potri.002G043200' => 'ptr', 'Potri.003G123750' => 'ptr', 'Potri.005G055401' => 'ptr', 'Potri.005G219700' => 'ptr', 'Potri.005G220000' => 'ptr', 'Potri.008G161901' => 'ptr', 'Potri.008G162000' => 'ptr', 'Potri.008G162400' => 'ptr', 'Potri.010G076900' => 'ptr', 'Pp3c12_9180' => 'ppa', 'Pp3c13_19770' => 'ppa', 'Pp3c14_22950' => 'ppa', 'Pp3c16_12160' => 'ppa', 'Pp3c27_7820' => 'ppa', 'Pp3c2_3490' => 'ppa', 'Pp3c3_23700' => 'ppa', 'Pp3c3_36520' => 'ppa', 'Pp3c4_15250' => 'ppa', 'PRCOL_00007002' => 'pco', 'Prupe.1G030600' => 'ppe', 'Prupe.1G030700' => 'ppe', 'Prupe.6G345200' => 'ppe', 'Prupe.8G230300' => 'ppe', 'Prupe.8G230500' => 'ppe', 'Psat3g059600' => 'psa', 'Psat5g200920' => 'psa', 'Psat6g056440' => 'psa', 'Psat6g057360' => 'psa', 'Psat6g134120' => 'psa', 'Psat6g134160' => 'psa', 'Psat7g008640' => 'psa', 'Psat7g185240' => 'psa', 'PSO017G1330' => 'pso', 'PSO063G6097' => 'pso', 'PSO170G0835' => 'pso', 'PSO170G2499' => 'pso', 'PSO210G5058' => 'pso', 'PSO210G6154' => 'pso', 'PSO585G0031' => 'pso', 'PSO832G0264' => 'pso', 'PSO832G4288' => 'pso', 'QL03p027355' => 'qlo', 'QL03p027430' => 'qlo', 'QL04p081380' => 'qlo', 'QL06p015642' => 'qlo', 'QL06p015650' => 'qlo', 'QL06p015686' => 'qlo', 'QL12p042927' => 'qlo', 'QL93p1863_0035' => 'qlo', 'RcHm_v2.0_Chr3g0450581' => 'rch', 'RcHm_v2.0_Chr4g0390371' => 'rch', 'RcHm_v2.0_Chr4g0390381' => 'rch', 'RcHm_v2.0_Chr4g0390491' => 'rch', 'RcHm_v2.0_Chr4g0390501' => 'rch', 'RcHm_v2.0_Chr6g0289231' => 'rch', 'Rhsim04G0190400' => 'rsi', 'Rhsim04G0190500' => 'rsi', 'Rhsim04G0190600' => 'rsi', 'Rhsim13G0031400' => 'rsi', 'Rhsim13G0165600' => 'rsi', 'RhsimUnG0114600' => 'rsi', 'RhsimUnG0114700' => 'rsi', 'Sabra02G0034800' => 'sbr', 'Sabra02G0035100' => 'sbr', 'Sabra05G0168600' => 'sbr', 'Sabra05G0168800' => 'sbr', 'Sabra08G0123700' => 'sbr', 'Sabra10G0031900' => 'sbr', 'Sabra13G0039000' => 'sbr', 'SalBow2G0782' => 'sbo', 'SalBow2G1403' => 'sbo', 'SalBow4G0074' => 'sbo', 'SalBow4G2635' => 'sbo', 'SalBow5G3010' => 'sbo', 'Sc05g0000870' => 'sci', 'Sc05g0000890' => 'sci', 'Sc13g0005000' => 'sci', 'Sc13g0005030' => 'sci', 'Sc19g0003790' => 'sci', 'Sc19g0003800' => 'sci', 'Sed0003467' => 'sed', 'Sed0009355' => 'sed', 'Sed0009894' => 'sed', 'Sed0011972' => 'sed', 'Sed0021483' => 'sed', 'Sed0021750' => 'sed', 'Sed0026279' => 'sed', 'SEGI_05312' => 'sgi', 'SEGI_10112' => 'sgi', 'SEGI_15835' => 'sgi', 'SEGI_30386' => 'sgi', 'SEGI_34122' => 'sgi', 'SEGI_35063' => 'sgi', 'SGA_v2.0_scaffold101G29794' => 'sas', 'SGA_v2.0_scaffold1G00573' => 'sas', 'SGA_v2.0_scaffold79G25637' => 'sas', 'SGA_v2.0_scaffold88G27283' => 'sas', 'SGA_v2.0_scaffold88G27285' => 'sas', 'SGA_v2.0_scaffold88G27331' => 'sas', 'SHI09937' => 'shi', 'SMO119G0302' => 'smo', 'SMO137G0231' => 'smo', 'SMO367G1151' => 'smo', 'Solyc02g082000.3' => 'sly', 'Solyc06g031670.3' => 'sly', 'Solyc06g053810.3' => 'sly', 'Solyc07g025457.1' => 'sly', 'Solyc08g059740.1' => 'sly', 'Solyc08g059750.3' => 'sly', 'Solyc09g083370.3' => 'sly', 'Solyc12g038950.3' => 'sly', 'Sopen02g026630' => 'spe', 'Sopen06g018930' => 'spe', 'Sopen06g018940' => 'spe', 'Sopen08g009460' => 'spe', 'Sopen09g032290' => 'spe', 'Sp1g03080' => 'spa', 'Sp1g03090' => 'spa', 'Sp1g05480' => 'spa', 'Sp2g07860' => 'spa', 'Sp2g08430' => 'spa', 'Sp2g08440' => 'spa', 'Sp2g26200' => 'spa', 'Sp4g13170' => 'spa', 'Sp6g33840' => 'spa', 'SpUn1204_0010' => 'spa', 'TAR365G0908' => 'tar', 'TAR381G1270' => 'tar', 'TAR381G1651' => 'tar', 'TAR625G1131' => 'tar', 'TAR633G0962' => 'tar', 'TAR633G1729' => 'tar', 'TAR633G1864' => 'tar', 'TAR636G0221' => 'tar', 'TAR636G0314' => 'tar', 'TAR636G3202' => 'tar', 'THA.LOC104800805' => 'tha', 'THA.LOC104801096' => 'tha', 'THA.LOC104801555' => 'tha', 'THA.LOC104808491' => 'tha', 'THA.LOC104808595' => 'tha', 'THA.LOC104815985' => 'tha', 'THA.LOC104822250' => 'tha', 'THA.LOC104826071' => 'tha', 'Thecc.01G265200' => 'tca', 'Thecc.01G265300' => 'tca', 'Thecc.01G265700' => 'tca', 'Thecc.03G109100' => 'tca', 'Thecc.04G245900' => 'tca', 'Thecc.04G246000' => 'tca', 'Thhalv10003334m.g' => 'esa', 'Thhalv10005508m.g' => 'esa', 'Thhalv10005643m.g' => 'esa', 'Thhalv10007316m.g' => 'esa', 'Thhalv10009006m.g' => 'esa', 'Thhalv10009309m.g' => 'esa', 'Thhalv10014917m.g' => 'esa', 'Thhalv10014919m.g' => 'esa', 'Thhalv10015393m.g' => 'esa', 'Thhalv10016515m.g' => 'esa', 'Thhalv10029242m.g' => 'esa', 'TPR.G16654' => 'tpr', 'TPR.G20589' => 'tpr', 'TPR.G23029' => 'tpr', 'TPR.G27731' => 'tpr', 'TPR.G28889' => 'tpr', 'TPR.G28899' => 'tpr', 'TPR.G30846' => 'tpr', 'TPR.G5452' => 'tpr', 'TPR.G5713' => 'tpr', 'TPR.G9046' => 'tpr', 'TPR.G9061' => 'tpr', 'TWI09G1075' => 'twi', 'TWI12G0806' => 'twi', 'TWI18G0108' => 'twi', 'TWI53G1361' => 'twi', 'TWI73G0185' => 'twi', 'TWI73G0427' => 'twi', 'unitig_37.g12001' => 'ugi', 'unitig_747.g21660' => 'ugi', 'unitig_748.g7232' => 'ugi', 'unitig_748.g7315' => 'ugi', 'unitig_85.g27262' => 'ugi', 'unitig_92.g28220' => 'ugi', 'vmacro02632' => 'vma', 'vmacro08410' => 'vma', 'vmacro08411' => 'vma', 'vmacro15407' => 'vma', 'VMungo0251G3619' => 'vmu', 'VMungo0720G1204' => 'vmu', 'VMungo0720G1918' => 'vmu', 'VMungo0720G2387' => 'vmu', 'VMungo0720G2961' => 'vmu', 'VMungo1215G2154' => 'vmu', 'VMungo1383G2411' => 'vmu', 'Zm00001eb051130' => 'zma', 'Zm00001eb116830' => 'zma', 'Zm00001eb116850' => 'zma', 'Zm00001eb151740' => 'zma', 'Zm00001eb292360' => 'zma', 'Zm00001eb301640' => 'zma' ) $gf_id = 'HOM05D000856' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000856' ) $data_identifier = 'HOM05D000856' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 13, 'ath' => (int) 10, 'atr' => (int) 1, 'acertr' => (int) 8, 'cqu' => (int) 6, 'bca' => (int) 21, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 11, 'car' => (int) 9, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 8, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 5, 'fan' => (int) 16, 'fve' => (int) 6, 'gma' => (int) 11, 'ghi' => (int) 19, 'gra' => (int) 9, 'vvi' => (int) 7, 'han' => (int) 17, 'cav' => (int) 5, 'hma' => (int) 2, 'vpl' => (int) 2, 'sun' => (int) 7, 'lal' => (int) 9, 'lja' => (int) 5, 'lonja' => (int) 9, 'lsa' => (int) 5, 'mes' => (int) 8, 'mpo' => (int) 3, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 10, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 15, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 9, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 9, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 6, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 5, 'spa' => (int) 10, 'tar' => (int) 10, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 11, 'tpr' => (int) 11, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 4, 'vmu' => (int) 7, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb301640' $species_info = array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ) $local_species = 'qlo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000856', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p00010' => 'bna', 'A03p04160' => 'bna', 'A03p17160' => 'bna', 'A04p23370' => 'bna', 'A05p14860' => 'bna', 'A08p37020' => 'bna', 'A09p08050' => 'bna', 'A09p66800' => 'bna', 'A09p67940' => 'bna', 'A10p02680' => 'bna', 'A10p05320' => 'bna', 'Aa31LG1G20560' => 'aar', 'Aa31LG1G20610' => 'aar', 'Aa31LG1G7810' => 'aar', 'Aa31LG5G3590' => 'aar', 'Aa31LG5G6140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3819' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4683' => 'aag', 'Actinidia04480' => 'ach', 'Actinidia05466' => 'ach', 'Actinidia08445' => 'ach', 'Actinidia21170' => 'ach', 'Actinidia24812' => 'ach', 'Actinidia24951' => 'ach', 'Actinidia40088' => 'ach', 'Ah.02g111660' => 'amhyb', 'Ah.11g048900' => 'amhyb', 'Ah.11g049910' => 'amhyb', 'AL1G13870' => 'aly', 'AL1G13880' => 'aly', 'AL1G16760' => 'aly', 'AL390U10020' => 'aly', 'AL4G25520' => 'aly', 'AL6G19890' => 'aly', 'AL6G19900' => 'aly', 'AL6G19910' => 'aly', 'AL8G40100' => 'aly', 'Aqoxy2G03562' => 'aox', 'Aqoxy5G00316' => 'aox', 'Aqoxy5G00926' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1628KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1H403S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2FU6SJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.882I6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8YRY2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YN1SN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AF70II' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZA8L1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F916KL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHRD8H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KTZ8QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S22EMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8M29T' => 'arhy', 'AT1G04270' => 'ath', 'AT1G04280' => 'ath', 'AT1G06750' => 'ath', 'AT1G33850' => 'ath', 'AT2G30630' => 'ath', 'AT5G09490' => 'ath', 'AT5G09500' => 'ath', 'AT5G09510' => 'ath', 'AT5G43640' => 'ath', 'AT5G63070' => 'ath', 'ATR0605G315' => 'atr', 'Atru.chr11.175' => 'acertr', 'Atru.chr11.653' => 'acertr', 'Atru.chr3.1616' => 'acertr', 'Atru.chr4.2230' => 'acertr', 'Atru.chr4.2232' => 'acertr', 'Atru.chr5.1598' => 'acertr', 'Atru.chr5.1600' => 'acertr', 'Atru.chr5.2188' => 'acertr', 'AUR62008326' => 'cqu', 'AUR62011922' => 'cqu', 'AUR62011924' => 'cqu', 'AUR62021771' => 'cqu', 'AUR62032237' => 'cqu', 'AUR62032240' => 'cqu', 'BcaB01g05572' => 'bca', 'BcaB02g10337' => 'bca', 'BcaB04g19944' => 'bca', 'BcaB05g21548' => 'bca', 'BcaB05g21549' => 'bca', 'BcaB05g23227' => 'bca', 'BcaB06g26256' => 'bca', 'BcaB06g26257' => 'bca', 'BcaB06g28379' => 'bca', 'BcaC02g11159' => 'bca', 'BcaC03g13258' => 'bca', 'BcaC03g13259' => 'bca', 'BcaC05g24456' => 'bca', 'BcaC05g24457' => 'bca', 'BcaC07g36922' => 'bca', 'BcaC07g36923' => 'bca', 'BcaC07g42050' => 'bca', 'BcaC07g42176' => 'bca', 'BcaC07g42195' => 'bca', 'BcaC07g42196' => 'bca', 'BcaNung06674' => 'bca', 'BolC2t06351H' => 'bol', 'BolC2t06352H' => 'bol', 'BolC3t12993H' => 'bol', 'BolC4t23525H' => 'bol', 'BolC4t27475H' => 'bol', 'BolC5t29025H' => 'bol', 'BolC5t29026H' => 'bol', 'BolC8t46898H' => 'bol', 'BolC8t46899H' => 'bol', 'BolC8t52630H' => 'bol', 'BolC8t52765H' => 'bol', 'BolC9t53824H' => 'bol', 'BraA03t09760Z' => 'bra', 'BraA03t10990Z' => 'bra', 'BraA05t20413Z' => 'bra', 'BraA08t35602Z' => 'bra', 'BraA09t36458Z' => 'bra', 'BraA09t42018Z' => 'bra', 'BraA09t42129Z' => 'bra', 'BraA10t42536Z' => 'bra', 'BraA10t42537Z' => 'bra', 'C01p10690' => 'bna', 'C02p03890' => 'bna', 'C02p03900' => 'bna', 'C03p04620' => 'bna', 'C04p19870' => 'bna', 'C04p59670' => 'bna', 'C05p02460' => 'bna', 'C05p02470' => 'bna', 'C08p00980' => 'bna', 'C08p00990' => 'bna', 'C08p51030' => 'bna', 'C08p52360' => 'bna', 'C09p09120' => 'bna', 'CAN.G19.15' => 'can', 'CAN.G251.10' => 'can', 'CAN.G251.9' => 'can', 'CAN.G398.24' => 'can', 'CAN.G410.32' => 'can', 'CAN.G881.2' => 'can', 'CANSAT01G3025' => 'cansat', 'CANSAT78G1211' => 'cansat', 'CANSAT78G1218' => 'cansat', 'CANSAT78G1521' => 'cansat', 'CANSAT78G1670' => 'cansat', 'CARHR003600' => 'chi', 'CARHR003610' => 'chi', 'CARHR006290' => 'chi', 'CARHR006430' => 'chi', 'CARHR124110' => 'chi', 'CARHR203870' => 'chi', 'CARHR203880' => 'chi', 'CARHR203890' => 'chi', 'CARHR276880' => 'chi', 'Carub.0001s0346' => 'cru', 'Carub.0001s0347' => 'cru', 'Carub.0001s0607' => 'cru', 'Carub.0003s2768' => 'cru', 'Carub.0003s2769' => 'cru', 'Carub.0004s1178' => 'cru', 'Carub.0006s0806' => 'cru', 'Carub.0006s0807' => 'cru', 'Carub.0006s0808' => 'cru', 'Carub.0008s0501' => 'cru', 'Carub.0008s2379' => 'cru', 'Ca_08655_v3' => 'car', 'Ca_08922_v3' => 'car', 'Ca_08923_v3' => 'car', 'Ca_09119_v3' => 'car', 'Ca_09703_v3' => 'car', 'Ca_09705_v3' => 'car', 'Ca_09835_v3' => 'car', 'Ca_26403_v3' => 'car', 'Ca_30719_v3' => 'car', 'CBR_g17958' => 'cbr', 'CBR_g40516' => 'cbr', 'Cc00_g05350' => 'ccan', 'Cc01_g18690' => 'ccan', 'Cc03_g04830' => 'ccan', 'Cc03_g04850' => 'ccan', 'CDE02G4469' => 'cde', 'CDE06G0883' => 'cde', 'CDE06G1295' => 'cde', 'CDE06G1390' => 'cde', 'CDE07G0584' => 'cde', 'CDE07G1084' => 'cde', 'CDE08G1259' => 'cde', 'Cfa002341' => 'cfa', 'Cfa024337' => 'cfa', 'Ciclev10004749m.g' => 'ccl', 'Ciclev10006127m.g' => 'ccl', 'Ciclev10019720m.g' => 'ccl', 'Ciclev10022652m.g' => 'ccl', 'CiPaw.01G190400' => 'cil', 'CiPaw.01G190500' => 'cil', 'CiPaw.02G116400' => 'cil', 'CiPaw.02G116500' => 'cil', 'CiPaw.04G183000' => 'cil', 'CiPaw.04G183300' => 'cil', 'ClCG05G004610' => 'cla', 'ClCG05G004620' => 'cla', 'ClCG06G006730' => 'cla', 'ClCG06G006740' => 'cla', 'ClCG11G003690' => 'cla', 'COL.COLO4_08276' => 'col', 'COL.COLO4_08277' => 'col', 'COL.COLO4_15787' => 'col', 'COL.COLO4_15789' => 'col', 'Cpa.g.c44815' => 'cpa', 'Cpa.g.sc52.144' => 'cpa', 'Cpa.g.sc58.46' => 'cpa', 'Cpa.g.sc58.47' => 'cpa', 'Cre08.g360900' => 'cre', 'CsaV3_2G013030' => 'csa', 'CsaV3_2G013050' => 'csa', 'CsaV3_2G015620' => 'csa', 'CsaV3_3G012590' => 'csa', 'CsaV3_3G012600' => 'csa', 'CSS0001641' => 'camsi', 'CSS0008310' => 'camsi', 'CSS0013011' => 'camsi', 'CSS0017147' => 'camsi', 'CSS0022970' => 'camsi', 'CSS0025655' => 'camsi', 'CSS0028665' => 'camsi', 'CSS0029117' => 'camsi', 'CSS0032024' => 'camsi', 'CSS0039681' => 'camsi', 'CSS0046516' => 'camsi', 'CSS0050307' => 'camsi', 'DCAR_005871' => 'dca', 'DCAR_007342' => 'dca', 'DCAR_024228' => 'dca', 'DCAR_027277' => 'dca', 'DCAR_030718' => 'dca', 'Dinv20287' => 'din', 'Dinv22461' => 'din', 'Dinv22464' => 'din', 'Dinv29912' => 'din', 'Dinv29913' => 'din', 'Dinv34580' => 'din', 'Dinv34582' => 'din', 'Dinv44632' => 'din', 'Duzib052G0266' => 'dzi', 'Duzib133G0907' => 'dzi', 'Duzib133G1034' => 'dzi', 'Duzib138G0207' => 'dzi', 'Duzib138G0491' => 'dzi', 'Duzib151G0812' => 'dzi', 'Duzib151G1166' => 'dzi', 'Duzib168G0192' => 'dzi', 'Duzib211G0077' => 'dzi', 'Duzib212G0429' => 'dzi', 'Duzib212G0472' => 'dzi', 'ECA233G2617' => 'eca', 'ECA236G4188' => 'eca', 'ECA240G0936' => 'eca', 'ECA240G1129' => 'eca', 'ECA247G0623' => 'eca', 'EL10Ac5g10451' => 'bvu', 'EL10Ac5g10453' => 'bvu', 'EL10Ac5g10894' => 'bvu', 'Eucgr.H00192' => 'egr', 'Eucgr.H00193' => 'egr', 'Eucgr.H00194' => 'egr', 'Eucgr.J01562' => 'egr', 'Eucgr.K03301' => 'egr', 'FAN02G0632' => 'fan', 'FAN05G5378' => 'fan', 'FAN09G3247' => 'fan', 'FAN12G0435' => 'fan', 'FAN12G2426' => 'fan', 'FAN14G1707' => 'fan', 'FAN14G4725' => 'fan', 'FAN15G2071' => 'fan', 'FAN17G3065' => 'fan', 'FAN19G1376' => 'fan', 'FAN20G0354' => 'fan', 'FAN20G2429' => 'fan', 'FAN20G2658' => 'fan', 'FAN24G2343' => 'fan', 'FAN27G2362' => 'fan', 'FAN28G1765' => 'fan', 'FvH4_1g16020' => 'fve', 'FvH4_2g04890' => 'fve', 'FvH4_2g22270' => 'fve', 'FvH4_4g02630' => 'fve', 'FvH4_4g02640' => 'fve', 'FvH4_6g02650' => 'fve', 'Glyma.02G140600' => 'gma', 'Glyma.03G159900' => 'gma', 'Glyma.05G234800' => 'gma', 'Glyma.07G269600' => 'gma', 'Glyma.08G042300' => 'gma', 'Glyma.10G033500' => 'gma', 'Glyma.10G185200' => 'gma', 'Glyma.17G004300' => 'gma', 'Glyma.19G161900' => 'gma', 'Glyma.20G205100' => 'gma', 'Glyma.20G205200' => 'gma', 'Gohir.A01G139101' => 'ghi', 'Gohir.A02G035600' => 'ghi', 'Gohir.A02G117901' => 'ghi', 'Gohir.A07G210100' => 'ghi', 'Gohir.A07G210200' => 'ghi', 'Gohir.A08G061100' => 'ghi', 'Gohir.A09G223000' => 'ghi', 'Gohir.A09G223100' => 'ghi', 'Gohir.A10G113900' => 'ghi', 'Gohir.A10G114000' => 'ghi', 'Gohir.D02G042300' => 'ghi', 'Gohir.D07G216100' => 'ghi', 'Gohir.D07G216200' => 'ghi', 'Gohir.D08G070400' => 'ghi', 'Gohir.D09G225000' => 'ghi', 'Gohir.D09G225100' => 'ghi', 'Gohir.D10G152300' => 'ghi', 'Gohir.D10G153200' => 'ghi', 'Gohir.D11G133701' => 'ghi', 'Gorai.004G074100' => 'gra', 'Gorai.005G046800' => 'gra', 'Gorai.006G246500' => 'gra', 'Gorai.006G246600' => 'gra', 'Gorai.007G142900' => 'gra', 'Gorai.011G171000' => 'gra', 'Gorai.011G171100' => 'gra', 'Gorai.013G104300' => 'gra', 'Gorai.013G104400' => 'gra', 'GSVIVG01000754001' => 'vvi', 'GSVIVG01000756001' => 'vvi', 'GSVIVG01010903001' => 'vvi', 'GSVIVG01017623001' => 'vvi', 'GSVIVG01018113001' => 'vvi', 'GSVIVG01018116001' => 'vvi', 'GSVIVG01018118001' => 'vvi', 'HanXRQChr03g0076211' => 'han', 'HanXRQChr03g0092431' => 'han', 'HanXRQChr03g0092441' => 'han', 'HanXRQChr03g0092591' => 'han', 'HanXRQChr03g0092671' => 'han', 'HanXRQChr03g0092681' => 'han', 'HanXRQChr03g0092691' => 'han', 'HanXRQChr03g0092701' => 'han', 'HanXRQChr03g0092721' => 'han', 'HanXRQChr03g0092731' => 'han', 'HanXRQChr04g0113681' => 'han', 'HanXRQChr10g0281371' => 'han', 'HanXRQChr11g0337141' => 'han', 'HanXRQChr13g0424521' => 'han', 'HanXRQChr13g0424531' => 'han', 'HanXRQChr13g0424541' => 'han', 'HanXRQChr16g0498221' => 'han', 'Haze_04377' => 'cav', 'Haze_11298' => 'cav', 'Haze_24547' => 'cav', 'Haze_24550' => 'cav', 'Haze_26587' => 'cav', 'Hma1.2p1_0650F.1_g195410' => 'hma', 'Hma1.2p1_0893F.1_g233470' => 'hma', 'HPP92_006508' => 'vpl', 'HPP92_024780' => 'vpl', 'Hund02688' => 'sun', 'Hund09380' => 'sun', 'Hund09381' => 'sun', 'Hund09832' => 'sun', 'Hund09833' => 'sun', 'Hund11351' => 'sun', 'Hund11513' => 'sun', 'Lalb_Chr06g0162591' => 'lal', 'Lalb_Chr06g0162601' => 'lal', 'Lalb_Chr06g0169321' => 'lal', 'Lalb_Chr09g0330951' => 'lal', 'Lalb_Chr16g0387631' => 'lal', 'Lalb_Chr21g0306241' => 'lal', 'Lalb_Chr25g0290051' => 'lal', 'Lalb_Chr25g0290061' => 'lal', 'Lalb_Chr25g0290071' => 'lal', 'Lj1g0003876' => 'lja', 'Lj1P1207T36' => 'lonja', 'Lj2C1156G12' => 'lonja', 'Lj3A793G39' => 'lonja', 'Lj3C580G2' => 'lonja', 'Lj3C780G2' => 'lonja', 'Lj3C780T4' => 'lonja', 'Lj3C793G9' => 'lonja', 'Lj4g0012960' => 'lja', 'Lj5g0021252' => 'lja', 'Lj5g0021484' => 'lja', 'Lj5g0024528' => 'lja', 'Lj6A399T12' => 'lonja', 'Lj6A656G65' => 'lonja', 'Lsat_1_v5_gn_3_125500' => 'lsa', 'Lsat_1_v5_gn_3_125540' => 'lsa', 'Lsat_1_v5_gn_5_72701' => 'lsa', 'Lsat_1_v5_gn_8_91560' => 'lsa', 'Lsat_1_v5_gn_9_9640' => 'lsa', 'Manes.01G200600' => 'mes', 'Manes.01G200700' => 'mes', 'Manes.03G168900' => 'mes', 'Manes.03G169000' => 'mes', 'Manes.05G085801' => 'mes', 'Manes.05G086200' => 'mes', 'Manes.15G036700' => 'mes', 'Manes.15G036900' => 'mes', 'Mapoly0004s0172' => 'mpo', 'Mapoly0023s0001' => 'mpo', 'Mapoly0142s0012' => 'mpo', 'MBI01_g32854_MAGBIO' => 'mbi', 'MBI11_g24427_MAGBIO' => 'mbi', 'MBI11_g47319_MAGBIO' => 'mbi', 'MCO01G433' => 'mco', 'MD00G1187800' => 'mdo', 'MD04G1226500' => 'mdo', 'MD05G1203900' => 'mdo', 'MD10G1191100' => 'mdo', 'MD12G1243500' => 'mdo', 'MD13G1207000' => 'mdo', 'MD13G1207100' => 'mdo', 'MD16G1208600' => 'mdo', 'Medtr1g050352' => 'mtr', 'Medtr1g070385' => 'mtr', 'Medtr1g070450' => 'mtr', 'Medtr1g075200' => 'mtr', 'Medtr1g075250' => 'mtr', 'Medtr1g075260' => 'mtr', 'Medtr1g475250' => 'mtr', 'Medtr4g075450' => 'mtr', 'Medtr7g096300' => 'mtr', 'Medtr8g105110' => 'mtr', 'MELO3C006470.2' => 'cme', 'MELO3C006471.2' => 'cme', 'MELO3C020772.2' => 'cme', 'MELO3C026780.2' => 'cme', 'MELO3C026781.2' => 'cme', 'Migut.D00390' => 'egut', 'Migut.G00435' => 'egut', 'Migut.G00436' => 'egut', 'Migut.G00718' => 'egut', 'MSTRG.21891' => 'ama', 'MSTRG.26910' => 'ama', 'MSTRG.4099' => 'ama', 'MSTRG.9925' => 'ama', 'Nitab4.5_0000165g0010' => 'nta', 'Nitab4.5_0000209g0180' => 'nta', 'Nitab4.5_0000244g0440' => 'nta', 'Nitab4.5_0000525g0220' => 'nta', 'Nitab4.5_0001597g0020' => 'nta', 'Nitab4.5_0001878g0040' => 'nta', 'Nitab4.5_0001878g0060' => 'nta', 'Nitab4.5_0002838g0100' => 'nta', 'Nitab4.5_0002838g0120' => 'nta', 'Nitab4.5_0004798g0030' => 'nta', 'Nitab4.5_0005420g0010' => 'nta', 'Nitab4.5_0005507g0010' => 'nta', 'Nitab4.5_0005574g0020' => 'nta', 'Nitab4.5_0005838g0010' => 'nta', 'Nitab4.5_0010580g0020' => 'nta', 'Nn1g02599' => 'nnu', 'Nn1g02608' => 'nnu', 'Nn3g17742' => 'nnu', 'Nn3g19534' => 'nnu', 'Nn3g19535' => 'nnu', 'Oeu008790.1' => 'oeu', 'Oeu008792.1' => 'oeu', 'Oeu032590.1' => 'oeu', 'Oeu035349.1' => 'oeu', 'Oeu049791.1' => 'oeu', 'Os01g0774500' => 'osa', 'Os03g0628800' => 'osa', 'Os03g0798600' => 'osa', 'Os05g0508800' => 'osa', 'Peaxi162Scf00036g02018' => 'pax', 'Peaxi162Scf00578g00032' => 'pax', 'Peaxi162Scf00578g00317' => 'pax', 'Peaxi162Scf00785g00114' => 'pax', 'Peaxi162Scf00813g00119' => 'pax', 'Peaxi162Scf00906g00227' => 'pax', 'PGR004G0875' => 'pgr', 'PGR004G2424' => 'pgr', 'PGR031G1239' => 'pgr', 'PGR031G2474' => 'pgr', 'PGR044G0423' => 'pgr', 'PGSC0003DMG400001128' => 'stu', 'PGSC0003DMG400007336' => 'stu', 'PGSC0003DMG400016318' => 'stu', 'PGSC0003DMG400016319' => 'stu', 'PGSC0003DMG400018074' => 'stu', 'Phvul.001G157700' => 'pvu', 'Phvul.002G148550' => 'pvu', 'Phvul.002G320200' => 'pvu', 'Phvul.003G089200' => 'pvu', 'Phvul.007G126000' => 'pvu', 'Phvul.007G126100' => 'pvu', 'Phvul.007G178000' => 'pvu', 'Phvul.007G178200' => 'pvu', 'Potri.002G043000' => 'ptr', 'Potri.002G043200' => 'ptr', 'Potri.003G123750' => 'ptr', 'Potri.005G055401' => 'ptr', 'Potri.005G219700' => 'ptr', 'Potri.005G220000' => 'ptr', 'Potri.008G161901' => 'ptr', 'Potri.008G162000' => 'ptr', 'Potri.008G162400' => 'ptr', 'Potri.010G076900' => 'ptr', 'Pp3c12_9180' => 'ppa', 'Pp3c13_19770' => 'ppa', 'Pp3c14_22950' => 'ppa', 'Pp3c16_12160' => 'ppa', 'Pp3c27_7820' => 'ppa', 'Pp3c2_3490' => 'ppa', 'Pp3c3_23700' => 'ppa', 'Pp3c3_36520' => 'ppa', 'Pp3c4_15250' => 'ppa', 'PRCOL_00007002' => 'pco', 'Prupe.1G030600' => 'ppe', 'Prupe.1G030700' => 'ppe', 'Prupe.6G345200' => 'ppe', 'Prupe.8G230300' => 'ppe', 'Prupe.8G230500' => 'ppe', 'Psat3g059600' => 'psa', 'Psat5g200920' => 'psa', 'Psat6g056440' => 'psa', 'Psat6g057360' => 'psa', 'Psat6g134120' => 'psa', 'Psat6g134160' => 'psa', 'Psat7g008640' => 'psa', 'Psat7g185240' => 'psa', 'PSO017G1330' => 'pso', 'PSO063G6097' => 'pso', 'PSO170G0835' => 'pso', 'PSO170G2499' => 'pso', 'PSO210G5058' => 'pso', 'PSO210G6154' => 'pso', 'PSO585G0031' => 'pso', 'PSO832G0264' => 'pso', 'PSO832G4288' => 'pso', 'QL03p027355' => 'qlo', 'QL03p027430' => 'qlo', 'QL04p081380' => 'qlo', 'QL06p015642' => 'qlo', 'QL06p015650' => 'qlo', 'QL06p015686' => 'qlo', 'QL12p042927' => 'qlo', 'QL93p1863_0035' => 'qlo', 'RcHm_v2.0_Chr3g0450581' => 'rch', 'RcHm_v2.0_Chr4g0390371' => 'rch', 'RcHm_v2.0_Chr4g0390381' => 'rch', 'RcHm_v2.0_Chr4g0390491' => 'rch', 'RcHm_v2.0_Chr4g0390501' => 'rch', 'RcHm_v2.0_Chr6g0289231' => 'rch', 'Rhsim04G0190400' => 'rsi', 'Rhsim04G0190500' => 'rsi', 'Rhsim04G0190600' => 'rsi', 'Rhsim13G0031400' => 'rsi', 'Rhsim13G0165600' => 'rsi', 'RhsimUnG0114600' => 'rsi', 'RhsimUnG0114700' => 'rsi', 'Sabra02G0034800' => 'sbr', 'Sabra02G0035100' => 'sbr', 'Sabra05G0168600' => 'sbr', 'Sabra05G0168800' => 'sbr', 'Sabra08G0123700' => 'sbr', 'Sabra10G0031900' => 'sbr', 'Sabra13G0039000' => 'sbr', 'SalBow2G0782' => 'sbo', 'SalBow2G1403' => 'sbo', 'SalBow4G0074' => 'sbo', 'SalBow4G2635' => 'sbo', 'SalBow5G3010' => 'sbo', 'Sc05g0000870' => 'sci', 'Sc05g0000890' => 'sci', 'Sc13g0005000' => 'sci', 'Sc13g0005030' => 'sci', 'Sc19g0003790' => 'sci', 'Sc19g0003800' => 'sci', 'Sed0003467' => 'sed', 'Sed0009355' => 'sed', 'Sed0009894' => 'sed', 'Sed0011972' => 'sed', 'Sed0021483' => 'sed', 'Sed0021750' => 'sed', 'Sed0026279' => 'sed', 'SEGI_05312' => 'sgi', 'SEGI_10112' => 'sgi', 'SEGI_15835' => 'sgi', 'SEGI_30386' => 'sgi', 'SEGI_34122' => 'sgi', 'SEGI_35063' => 'sgi', 'SGA_v2.0_scaffold101G29794' => 'sas', 'SGA_v2.0_scaffold1G00573' => 'sas', 'SGA_v2.0_scaffold79G25637' => 'sas', 'SGA_v2.0_scaffold88G27283' => 'sas', 'SGA_v2.0_scaffold88G27285' => 'sas', 'SGA_v2.0_scaffold88G27331' => 'sas', 'SHI09937' => 'shi', 'SMO119G0302' => 'smo', 'SMO137G0231' => 'smo', 'SMO367G1151' => 'smo', 'Solyc02g082000.3' => 'sly', 'Solyc06g031670.3' => 'sly', 'Solyc06g053810.3' => 'sly', 'Solyc07g025457.1' => 'sly', 'Solyc08g059740.1' => 'sly', 'Solyc08g059750.3' => 'sly', 'Solyc09g083370.3' => 'sly', 'Solyc12g038950.3' => 'sly', 'Sopen02g026630' => 'spe', 'Sopen06g018930' => 'spe', 'Sopen06g018940' => 'spe', 'Sopen08g009460' => 'spe', 'Sopen09g032290' => 'spe', 'Sp1g03080' => 'spa', 'Sp1g03090' => 'spa', 'Sp1g05480' => 'spa', 'Sp2g07860' => 'spa', 'Sp2g08430' => 'spa', 'Sp2g08440' => 'spa', 'Sp2g26200' => 'spa', 'Sp4g13170' => 'spa', 'Sp6g33840' => 'spa', 'SpUn1204_0010' => 'spa', 'TAR365G0908' => 'tar', 'TAR381G1270' => 'tar', 'TAR381G1651' => 'tar', 'TAR625G1131' => 'tar', 'TAR633G0962' => 'tar', 'TAR633G1729' => 'tar', 'TAR633G1864' => 'tar', 'TAR636G0221' => 'tar', 'TAR636G0314' => 'tar', 'TAR636G3202' => 'tar', 'THA.LOC104800805' => 'tha', 'THA.LOC104801096' => 'tha', 'THA.LOC104801555' => 'tha', 'THA.LOC104808491' => 'tha', 'THA.LOC104808595' => 'tha', 'THA.LOC104815985' => 'tha', 'THA.LOC104822250' => 'tha', 'THA.LOC104826071' => 'tha', 'Thecc.01G265200' => 'tca', 'Thecc.01G265300' => 'tca', 'Thecc.01G265700' => 'tca', 'Thecc.03G109100' => 'tca', 'Thecc.04G245900' => 'tca', 'Thecc.04G246000' => 'tca', 'Thhalv10003334m.g' => 'esa', 'Thhalv10005508m.g' => 'esa', 'Thhalv10005643m.g' => 'esa', 'Thhalv10007316m.g' => 'esa', 'Thhalv10009006m.g' => 'esa', 'Thhalv10009309m.g' => 'esa', 'Thhalv10014917m.g' => 'esa', 'Thhalv10014919m.g' => 'esa', 'Thhalv10015393m.g' => 'esa', 'Thhalv10016515m.g' => 'esa', 'Thhalv10029242m.g' => 'esa', 'TPR.G16654' => 'tpr', 'TPR.G20589' => 'tpr', 'TPR.G23029' => 'tpr', 'TPR.G27731' => 'tpr', 'TPR.G28889' => 'tpr', 'TPR.G28899' => 'tpr', 'TPR.G30846' => 'tpr', 'TPR.G5452' => 'tpr', 'TPR.G5713' => 'tpr', 'TPR.G9046' => 'tpr', 'TPR.G9061' => 'tpr', 'TWI09G1075' => 'twi', 'TWI12G0806' => 'twi', 'TWI18G0108' => 'twi', 'TWI53G1361' => 'twi', 'TWI73G0185' => 'twi', 'TWI73G0427' => 'twi', 'unitig_37.g12001' => 'ugi', 'unitig_747.g21660' => 'ugi', 'unitig_748.g7232' => 'ugi', 'unitig_748.g7315' => 'ugi', 'unitig_85.g27262' => 'ugi', 'unitig_92.g28220' => 'ugi', 'vmacro02632' => 'vma', 'vmacro08410' => 'vma', 'vmacro08411' => 'vma', 'vmacro15407' => 'vma', 'VMungo0251G3619' => 'vmu', 'VMungo0720G1204' => 'vmu', 'VMungo0720G1918' => 'vmu', 'VMungo0720G2387' => 'vmu', 'VMungo0720G2961' => 'vmu', 'VMungo1215G2154' => 'vmu', 'VMungo1383G2411' => 'vmu', 'Zm00001eb051130' => 'zma', 'Zm00001eb116830' => 'zma', 'Zm00001eb116850' => 'zma', 'Zm00001eb151740' => 'zma', 'Zm00001eb292360' => 'zma', 'Zm00001eb301640' => 'zma' ), 'gf_id' => 'HOM05D000856', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000856' ), 'data_identifier' => 'HOM05D000856', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000856', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p00010' => 'bna', 'A03p04160' => 'bna', 'A03p17160' => 'bna', 'A04p23370' => 'bna', 'A05p14860' => 'bna', 'A08p37020' => 'bna', 'A09p08050' => 'bna', 'A09p66800' => 'bna', 'A09p67940' => 'bna', 'A10p02680' => 'bna', 'A10p05320' => 'bna', 'Aa31LG1G20560' => 'aar', 'Aa31LG1G20610' => 'aar', 'Aa31LG1G7810' => 'aar', 'Aa31LG5G3590' => 'aar', 'Aa31LG5G6140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3819' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4683' => 'aag', 'Actinidia04480' => 'ach', 'Actinidia05466' => 'ach', 'Actinidia08445' => 'ach', 'Actinidia21170' => 'ach', 'Actinidia24812' => 'ach', 'Actinidia24951' => 'ach', 'Actinidia40088' => 'ach', 'Ah.02g111660' => 'amhyb', 'Ah.11g048900' => 'amhyb', 'Ah.11g049910' => 'amhyb', 'AL1G13870' => 'aly', 'AL1G13880' => 'aly', 'AL1G16760' => 'aly', 'AL390U10020' => 'aly', 'AL4G25520' => 'aly', 'AL6G19890' => 'aly', 'AL6G19900' => 'aly', 'AL6G19910' => 'aly', 'AL8G40100' => 'aly', 'Aqoxy2G03562' => 'aox', 'Aqoxy5G00316' => 'aox', 'Aqoxy5G00926' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1628KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1H403S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2FU6SJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.882I6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8YRY2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YN1SN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AF70II' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZA8L1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F916KL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHRD8H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KTZ8QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S22EMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8M29T' => 'arhy', 'AT1G04270' => 'ath', 'AT1G04280' => 'ath', 'AT1G06750' => 'ath', 'AT1G33850' => 'ath', 'AT2G30630' => 'ath', 'AT5G09490' => 'ath', 'AT5G09500' => 'ath', 'AT5G09510' => 'ath', 'AT5G43640' => 'ath', 'AT5G63070' => 'ath', 'ATR0605G315' => 'atr', 'Atru.chr11.175' => 'acertr', 'Atru.chr11.653' => 'acertr', 'Atru.chr3.1616' => 'acertr', 'Atru.chr4.2230' => 'acertr', 'Atru.chr4.2232' => 'acertr', 'Atru.chr5.1598' => 'acertr', 'Atru.chr5.1600' => 'acertr', 'Atru.chr5.2188' => 'acertr', 'AUR62008326' => 'cqu', 'AUR62011922' => 'cqu', 'AUR62011924' => 'cqu', 'AUR62021771' => 'cqu', 'AUR62032237' => 'cqu', 'AUR62032240' => 'cqu', 'BcaB01g05572' => 'bca', 'BcaB02g10337' => 'bca', 'BcaB04g19944' => 'bca', 'BcaB05g21548' => 'bca', 'BcaB05g21549' => 'bca', 'BcaB05g23227' => 'bca', 'BcaB06g26256' => 'bca', 'BcaB06g26257' => 'bca', 'BcaB06g28379' => 'bca', 'BcaC02g11159' => 'bca', 'BcaC03g13258' => 'bca', 'BcaC03g13259' => 'bca', 'BcaC05g24456' => 'bca', 'BcaC05g24457' => 'bca', 'BcaC07g36922' => 'bca', 'BcaC07g36923' => 'bca', 'BcaC07g42050' => 'bca', 'BcaC07g42176' => 'bca', 'BcaC07g42195' => 'bca', 'BcaC07g42196' => 'bca', 'BcaNung06674' => 'bca', 'BolC2t06351H' => 'bol', 'BolC2t06352H' => 'bol', 'BolC3t12993H' => 'bol', 'BolC4t23525H' => 'bol', 'BolC4t27475H' => 'bol', 'BolC5t29025H' => 'bol', 'BolC5t29026H' => 'bol', 'BolC8t46898H' => 'bol', 'BolC8t46899H' => 'bol', 'BolC8t52630H' => 'bol', 'BolC8t52765H' => 'bol', 'BolC9t53824H' => 'bol', 'BraA03t09760Z' => 'bra', 'BraA03t10990Z' => 'bra', 'BraA05t20413Z' => 'bra', 'BraA08t35602Z' => 'bra', 'BraA09t36458Z' => 'bra', 'BraA09t42018Z' => 'bra', 'BraA09t42129Z' => 'bra', 'BraA10t42536Z' => 'bra', 'BraA10t42537Z' => 'bra', 'C01p10690' => 'bna', 'C02p03890' => 'bna', 'C02p03900' => 'bna', 'C03p04620' => 'bna', 'C04p19870' => 'bna', 'C04p59670' => 'bna', 'C05p02460' => 'bna', 'C05p02470' => 'bna', 'C08p00980' => 'bna', 'C08p00990' => 'bna', 'C08p51030' => 'bna', 'C08p52360' => 'bna', 'C09p09120' => 'bna', 'CAN.G19.15' => 'can', 'CAN.G251.10' => 'can', 'CAN.G251.9' => 'can', 'CAN.G398.24' => 'can', 'CAN.G410.32' => 'can', 'CAN.G881.2' => 'can', 'CANSAT01G3025' => 'cansat', 'CANSAT78G1211' => 'cansat', 'CANSAT78G1218' => 'cansat', 'CANSAT78G1521' => 'cansat', 'CANSAT78G1670' => 'cansat', 'CARHR003600' => 'chi', 'CARHR003610' => 'chi', 'CARHR006290' => 'chi', 'CARHR006430' => 'chi', 'CARHR124110' => 'chi', 'CARHR203870' => 'chi', 'CARHR203880' => 'chi', 'CARHR203890' => 'chi', 'CARHR276880' => 'chi', 'Carub.0001s0346' => 'cru', 'Carub.0001s0347' => 'cru', 'Carub.0001s0607' => 'cru', 'Carub.0003s2768' => 'cru', 'Carub.0003s2769' => 'cru', 'Carub.0004s1178' => 'cru', 'Carub.0006s0806' => 'cru', 'Carub.0006s0807' => 'cru', 'Carub.0006s0808' => 'cru', 'Carub.0008s0501' => 'cru', 'Carub.0008s2379' => 'cru', 'Ca_08655_v3' => 'car', 'Ca_08922_v3' => 'car', 'Ca_08923_v3' => 'car', 'Ca_09119_v3' => 'car', 'Ca_09703_v3' => 'car', 'Ca_09705_v3' => 'car', 'Ca_09835_v3' => 'car', 'Ca_26403_v3' => 'car', 'Ca_30719_v3' => 'car', 'CBR_g17958' => 'cbr', 'CBR_g40516' => 'cbr', 'Cc00_g05350' => 'ccan', 'Cc01_g18690' => 'ccan', 'Cc03_g04830' => 'ccan', 'Cc03_g04850' => 'ccan', 'CDE02G4469' => 'cde', 'CDE06G0883' => 'cde', 'CDE06G1295' => 'cde', 'CDE06G1390' => 'cde', 'CDE07G0584' => 'cde', 'CDE07G1084' => 'cde', 'CDE08G1259' => 'cde', 'Cfa002341' => 'cfa', 'Cfa024337' => 'cfa', 'Ciclev10004749m.g' => 'ccl', 'Ciclev10006127m.g' => 'ccl', 'Ciclev10019720m.g' => 'ccl', 'Ciclev10022652m.g' => 'ccl', 'CiPaw.01G190400' => 'cil', 'CiPaw.01G190500' => 'cil', 'CiPaw.02G116400' => 'cil', 'CiPaw.02G116500' => 'cil', 'CiPaw.04G183000' => 'cil', 'CiPaw.04G183300' => 'cil', 'ClCG05G004610' => 'cla', 'ClCG05G004620' => 'cla', 'ClCG06G006730' => 'cla', 'ClCG06G006740' => 'cla', 'ClCG11G003690' => 'cla', 'COL.COLO4_08276' => 'col', 'COL.COLO4_08277' => 'col', 'COL.COLO4_15787' => 'col', 'COL.COLO4_15789' => 'col', 'Cpa.g.c44815' => 'cpa', 'Cpa.g.sc52.144' => 'cpa', 'Cpa.g.sc58.46' => 'cpa', 'Cpa.g.sc58.47' => 'cpa', 'Cre08.g360900' => 'cre', 'CsaV3_2G013030' => 'csa', 'CsaV3_2G013050' => 'csa', 'CsaV3_2G015620' => 'csa', 'CsaV3_3G012590' => 'csa', 'CsaV3_3G012600' => 'csa', 'CSS0001641' => 'camsi', 'CSS0008310' => 'camsi', 'CSS0013011' => 'camsi', 'CSS0017147' => 'camsi', 'CSS0022970' => 'camsi', 'CSS0025655' => 'camsi', 'CSS0028665' => 'camsi', 'CSS0029117' => 'camsi', 'CSS0032024' => 'camsi', 'CSS0039681' => 'camsi', 'CSS0046516' => 'camsi', 'CSS0050307' => 'camsi', 'DCAR_005871' => 'dca', 'DCAR_007342' => 'dca', 'DCAR_024228' => 'dca', 'DCAR_027277' => 'dca', 'DCAR_030718' => 'dca', 'Dinv20287' => 'din', 'Dinv22461' => 'din', 'Dinv22464' => 'din', 'Dinv29912' => 'din', 'Dinv29913' => 'din', 'Dinv34580' => 'din', 'Dinv34582' => 'din', 'Dinv44632' => 'din', 'Duzib052G0266' => 'dzi', 'Duzib133G0907' => 'dzi', 'Duzib133G1034' => 'dzi', 'Duzib138G0207' => 'dzi', 'Duzib138G0491' => 'dzi', 'Duzib151G0812' => 'dzi', 'Duzib151G1166' => 'dzi', 'Duzib168G0192' => 'dzi', 'Duzib211G0077' => 'dzi', 'Duzib212G0429' => 'dzi', 'Duzib212G0472' => 'dzi', 'ECA233G2617' => 'eca', 'ECA236G4188' => 'eca', 'ECA240G0936' => 'eca', 'ECA240G1129' => 'eca', 'ECA247G0623' => 'eca', 'EL10Ac5g10451' => 'bvu', 'EL10Ac5g10453' => 'bvu', 'EL10Ac5g10894' => 'bvu', 'Eucgr.H00192' => 'egr', 'Eucgr.H00193' => 'egr', 'Eucgr.H00194' => 'egr', 'Eucgr.J01562' => 'egr', 'Eucgr.K03301' => 'egr', 'FAN02G0632' => 'fan', 'FAN05G5378' => 'fan', 'FAN09G3247' => 'fan', 'FAN12G0435' => 'fan', 'FAN12G2426' => 'fan', 'FAN14G1707' => 'fan', 'FAN14G4725' => 'fan', 'FAN15G2071' => 'fan', 'FAN17G3065' => 'fan', 'FAN19G1376' => 'fan', 'FAN20G0354' => 'fan', 'FAN20G2429' => 'fan', 'FAN20G2658' => 'fan', 'FAN24G2343' => 'fan', 'FAN27G2362' => 'fan', 'FAN28G1765' => 'fan', 'FvH4_1g16020' => 'fve', 'FvH4_2g04890' => 'fve', 'FvH4_2g22270' => 'fve', 'FvH4_4g02630' => 'fve', 'FvH4_4g02640' => 'fve', 'FvH4_6g02650' => 'fve', 'Glyma.02G140600' => 'gma', 'Glyma.03G159900' => 'gma', 'Glyma.05G234800' => 'gma', 'Glyma.07G269600' => 'gma', 'Glyma.08G042300' => 'gma', 'Glyma.10G033500' => 'gma', 'Glyma.10G185200' => 'gma', 'Glyma.17G004300' => 'gma', 'Glyma.19G161900' => 'gma', 'Glyma.20G205100' => 'gma', 'Glyma.20G205200' => 'gma', 'Gohir.A01G139101' => 'ghi', 'Gohir.A02G035600' => 'ghi', 'Gohir.A02G117901' => 'ghi', 'Gohir.A07G210100' => 'ghi', 'Gohir.A07G210200' => 'ghi', 'Gohir.A08G061100' => 'ghi', 'Gohir.A09G223000' => 'ghi', 'Gohir.A09G223100' => 'ghi', 'Gohir.A10G113900' => 'ghi', 'Gohir.A10G114000' => 'ghi', 'Gohir.D02G042300' => 'ghi', 'Gohir.D07G216100' => 'ghi', 'Gohir.D07G216200' => 'ghi', 'Gohir.D08G070400' => 'ghi', 'Gohir.D09G225000' => 'ghi', 'Gohir.D09G225100' => 'ghi', 'Gohir.D10G152300' => 'ghi', 'Gohir.D10G153200' => 'ghi', 'Gohir.D11G133701' => 'ghi', 'Gorai.004G074100' => 'gra', 'Gorai.005G046800' => 'gra', 'Gorai.006G246500' => 'gra', 'Gorai.006G246600' => 'gra', 'Gorai.007G142900' => 'gra', 'Gorai.011G171000' => 'gra', 'Gorai.011G171100' => 'gra', 'Gorai.013G104300' => 'gra', 'Gorai.013G104400' => 'gra', 'GSVIVG01000754001' => 'vvi', 'GSVIVG01000756001' => 'vvi', 'GSVIVG01010903001' => 'vvi', 'GSVIVG01017623001' => 'vvi', 'GSVIVG01018113001' => 'vvi', 'GSVIVG01018116001' => 'vvi', 'GSVIVG01018118001' => 'vvi', 'HanXRQChr03g0076211' => 'han', 'HanXRQChr03g0092431' => 'han', 'HanXRQChr03g0092441' => 'han', 'HanXRQChr03g0092591' => 'han', 'HanXRQChr03g0092671' => 'han', 'HanXRQChr03g0092681' => 'han', 'HanXRQChr03g0092691' => 'han', 'HanXRQChr03g0092701' => 'han', 'HanXRQChr03g0092721' => 'han', 'HanXRQChr03g0092731' => 'han', 'HanXRQChr04g0113681' => 'han', 'HanXRQChr10g0281371' => 'han', 'HanXRQChr11g0337141' => 'han', 'HanXRQChr13g0424521' => 'han', 'HanXRQChr13g0424531' => 'han', 'HanXRQChr13g0424541' => 'han', 'HanXRQChr16g0498221' => 'han', 'Haze_04377' => 'cav', 'Haze_11298' => 'cav', 'Haze_24547' => 'cav', 'Haze_24550' => 'cav', 'Haze_26587' => 'cav', 'Hma1.2p1_0650F.1_g195410' => 'hma', 'Hma1.2p1_0893F.1_g233470' => 'hma', 'HPP92_006508' => 'vpl', 'HPP92_024780' => 'vpl', 'Hund02688' => 'sun', 'Hund09380' => 'sun', 'Hund09381' => 'sun', 'Hund09832' => 'sun', 'Hund09833' => 'sun', 'Hund11351' => 'sun', 'Hund11513' => 'sun', 'Lalb_Chr06g0162591' => 'lal', 'Lalb_Chr06g0162601' => 'lal', 'Lalb_Chr06g0169321' => 'lal', 'Lalb_Chr09g0330951' => 'lal', 'Lalb_Chr16g0387631' => 'lal', 'Lalb_Chr21g0306241' => 'lal', 'Lalb_Chr25g0290051' => 'lal', 'Lalb_Chr25g0290061' => 'lal', 'Lalb_Chr25g0290071' => 'lal', 'Lj1g0003876' => 'lja', 'Lj1P1207T36' => 'lonja', 'Lj2C1156G12' => 'lonja', 'Lj3A793G39' => 'lonja', 'Lj3C580G2' => 'lonja', 'Lj3C780G2' => 'lonja', 'Lj3C780T4' => 'lonja', 'Lj3C793G9' => 'lonja', 'Lj4g0012960' => 'lja', 'Lj5g0021252' => 'lja', 'Lj5g0021484' => 'lja', 'Lj5g0024528' => 'lja', 'Lj6A399T12' => 'lonja', 'Lj6A656G65' => 'lonja', 'Lsat_1_v5_gn_3_125500' => 'lsa', 'Lsat_1_v5_gn_3_125540' => 'lsa', 'Lsat_1_v5_gn_5_72701' => 'lsa', 'Lsat_1_v5_gn_8_91560' => 'lsa', 'Lsat_1_v5_gn_9_9640' => 'lsa', 'Manes.01G200600' => 'mes', 'Manes.01G200700' => 'mes', 'Manes.03G168900' => 'mes', 'Manes.03G169000' => 'mes', 'Manes.05G085801' => 'mes', 'Manes.05G086200' => 'mes', 'Manes.15G036700' => 'mes', 'Manes.15G036900' => 'mes', 'Mapoly0004s0172' => 'mpo', 'Mapoly0023s0001' => 'mpo', 'Mapoly0142s0012' => 'mpo', 'MBI01_g32854_MAGBIO' => 'mbi', 'MBI11_g24427_MAGBIO' => 'mbi', 'MBI11_g47319_MAGBIO' => 'mbi', 'MCO01G433' => 'mco', 'MD00G1187800' => 'mdo', 'MD04G1226500' => 'mdo', 'MD05G1203900' => 'mdo', 'MD10G1191100' => 'mdo', 'MD12G1243500' => 'mdo', 'MD13G1207000' => 'mdo', 'MD13G1207100' => 'mdo', 'MD16G1208600' => 'mdo', 'Medtr1g050352' => 'mtr', 'Medtr1g070385' => 'mtr', 'Medtr1g070450' => 'mtr', 'Medtr1g075200' => 'mtr', 'Medtr1g075250' => 'mtr', 'Medtr1g075260' => 'mtr', 'Medtr1g475250' => 'mtr', 'Medtr4g075450' => 'mtr', 'Medtr7g096300' => 'mtr', 'Medtr8g105110' => 'mtr', 'MELO3C006470.2' => 'cme', 'MELO3C006471.2' => 'cme', 'MELO3C020772.2' => 'cme', 'MELO3C026780.2' => 'cme', 'MELO3C026781.2' => 'cme', 'Migut.D00390' => 'egut', 'Migut.G00435' => 'egut', 'Migut.G00436' => 'egut', 'Migut.G00718' => 'egut', 'MSTRG.21891' => 'ama', 'MSTRG.26910' => 'ama', 'MSTRG.4099' => 'ama', 'MSTRG.9925' => 'ama', 'Nitab4.5_0000165g0010' => 'nta', 'Nitab4.5_0000209g0180' => 'nta', 'Nitab4.5_0000244g0440' => 'nta', 'Nitab4.5_0000525g0220' => 'nta', 'Nitab4.5_0001597g0020' => 'nta', 'Nitab4.5_0001878g0040' => 'nta', 'Nitab4.5_0001878g0060' => 'nta', 'Nitab4.5_0002838g0100' => 'nta', 'Nitab4.5_0002838g0120' => 'nta', 'Nitab4.5_0004798g0030' => 'nta', 'Nitab4.5_0005420g0010' => 'nta', 'Nitab4.5_0005507g0010' => 'nta', 'Nitab4.5_0005574g0020' => 'nta', 'Nitab4.5_0005838g0010' => 'nta', 'Nitab4.5_0010580g0020' => 'nta', 'Nn1g02599' => 'nnu', 'Nn1g02608' => 'nnu', 'Nn3g17742' => 'nnu', 'Nn3g19534' => 'nnu', 'Nn3g19535' => 'nnu', 'Oeu008790.1' => 'oeu', 'Oeu008792.1' => 'oeu', 'Oeu032590.1' => 'oeu', 'Oeu035349.1' => 'oeu', 'Oeu049791.1' => 'oeu', 'Os01g0774500' => 'osa', 'Os03g0628800' => 'osa', 'Os03g0798600' => 'osa', 'Os05g0508800' => 'osa', 'Peaxi162Scf00036g02018' => 'pax', 'Peaxi162Scf00578g00032' => 'pax', 'Peaxi162Scf00578g00317' => 'pax', 'Peaxi162Scf00785g00114' => 'pax', 'Peaxi162Scf00813g00119' => 'pax', 'Peaxi162Scf00906g00227' => 'pax', 'PGR004G0875' => 'pgr', 'PGR004G2424' => 'pgr', 'PGR031G1239' => 'pgr', 'PGR031G2474' => 'pgr', 'PGR044G0423' => 'pgr', 'PGSC0003DMG400001128' => 'stu', 'PGSC0003DMG400007336' => 'stu', 'PGSC0003DMG400016318' => 'stu', 'PGSC0003DMG400016319' => 'stu', 'PGSC0003DMG400018074' => 'stu', 'Phvul.001G157700' => 'pvu', 'Phvul.002G148550' => 'pvu', 'Phvul.002G320200' => 'pvu', 'Phvul.003G089200' => 'pvu', 'Phvul.007G126000' => 'pvu', 'Phvul.007G126100' => 'pvu', 'Phvul.007G178000' => 'pvu', 'Phvul.007G178200' => 'pvu', 'Potri.002G043000' => 'ptr', 'Potri.002G043200' => 'ptr', 'Potri.003G123750' => 'ptr', 'Potri.005G055401' => 'ptr', 'Potri.005G219700' => 'ptr', 'Potri.005G220000' => 'ptr', 'Potri.008G161901' => 'ptr', 'Potri.008G162000' => 'ptr', 'Potri.008G162400' => 'ptr', 'Potri.010G076900' => 'ptr', 'Pp3c12_9180' => 'ppa', 'Pp3c13_19770' => 'ppa', 'Pp3c14_22950' => 'ppa', 'Pp3c16_12160' => 'ppa', 'Pp3c27_7820' => 'ppa', 'Pp3c2_3490' => 'ppa', 'Pp3c3_23700' => 'ppa', 'Pp3c3_36520' => 'ppa', 'Pp3c4_15250' => 'ppa', 'PRCOL_00007002' => 'pco', 'Prupe.1G030600' => 'ppe', 'Prupe.1G030700' => 'ppe', 'Prupe.6G345200' => 'ppe', 'Prupe.8G230300' => 'ppe', 'Prupe.8G230500' => 'ppe', 'Psat3g059600' => 'psa', 'Psat5g200920' => 'psa', 'Psat6g056440' => 'psa', 'Psat6g057360' => 'psa', 'Psat6g134120' => 'psa', 'Psat6g134160' => 'psa', 'Psat7g008640' => 'psa', 'Psat7g185240' => 'psa', 'PSO017G1330' => 'pso', 'PSO063G6097' => 'pso', 'PSO170G0835' => 'pso', 'PSO170G2499' => 'pso', 'PSO210G5058' => 'pso', 'PSO210G6154' => 'pso', 'PSO585G0031' => 'pso', 'PSO832G0264' => 'pso', 'PSO832G4288' => 'pso', 'QL03p027355' => 'qlo', 'QL03p027430' => 'qlo', 'QL04p081380' => 'qlo', 'QL06p015642' => 'qlo', 'QL06p015650' => 'qlo', 'QL06p015686' => 'qlo', 'QL12p042927' => 'qlo', 'QL93p1863_0035' => 'qlo', 'RcHm_v2.0_Chr3g0450581' => 'rch', 'RcHm_v2.0_Chr4g0390371' => 'rch', 'RcHm_v2.0_Chr4g0390381' => 'rch', 'RcHm_v2.0_Chr4g0390491' => 'rch', 'RcHm_v2.0_Chr4g0390501' => 'rch', 'RcHm_v2.0_Chr6g0289231' => 'rch', 'Rhsim04G0190400' => 'rsi', 'Rhsim04G0190500' => 'rsi', 'Rhsim04G0190600' => 'rsi', 'Rhsim13G0031400' => 'rsi', 'Rhsim13G0165600' => 'rsi', 'RhsimUnG0114600' => 'rsi', 'RhsimUnG0114700' => 'rsi', 'Sabra02G0034800' => 'sbr', 'Sabra02G0035100' => 'sbr', 'Sabra05G0168600' => 'sbr', 'Sabra05G0168800' => 'sbr', 'Sabra08G0123700' => 'sbr', 'Sabra10G0031900' => 'sbr', 'Sabra13G0039000' => 'sbr', 'SalBow2G0782' => 'sbo', 'SalBow2G1403' => 'sbo', 'SalBow4G0074' => 'sbo', 'SalBow4G2635' => 'sbo', 'SalBow5G3010' => 'sbo', 'Sc05g0000870' => 'sci', 'Sc05g0000890' => 'sci', 'Sc13g0005000' => 'sci', 'Sc13g0005030' => 'sci', 'Sc19g0003790' => 'sci', 'Sc19g0003800' => 'sci', 'Sed0003467' => 'sed', 'Sed0009355' => 'sed', 'Sed0009894' => 'sed', 'Sed0011972' => 'sed', 'Sed0021483' => 'sed', 'Sed0021750' => 'sed', 'Sed0026279' => 'sed', 'SEGI_05312' => 'sgi', 'SEGI_10112' => 'sgi', 'SEGI_15835' => 'sgi', 'SEGI_30386' => 'sgi', 'SEGI_34122' => 'sgi', 'SEGI_35063' => 'sgi', 'SGA_v2.0_scaffold101G29794' => 'sas', 'SGA_v2.0_scaffold1G00573' => 'sas', 'SGA_v2.0_scaffold79G25637' => 'sas', 'SGA_v2.0_scaffold88G27283' => 'sas', 'SGA_v2.0_scaffold88G27285' => 'sas', 'SGA_v2.0_scaffold88G27331' => 'sas', 'SHI09937' => 'shi', 'SMO119G0302' => 'smo', 'SMO137G0231' => 'smo', 'SMO367G1151' => 'smo', 'Solyc02g082000.3' => 'sly', 'Solyc06g031670.3' => 'sly', 'Solyc06g053810.3' => 'sly', 'Solyc07g025457.1' => 'sly', 'Solyc08g059740.1' => 'sly', 'Solyc08g059750.3' => 'sly', 'Solyc09g083370.3' => 'sly', 'Solyc12g038950.3' => 'sly', 'Sopen02g026630' => 'spe', 'Sopen06g018930' => 'spe', 'Sopen06g018940' => 'spe', 'Sopen08g009460' => 'spe', 'Sopen09g032290' => 'spe', 'Sp1g03080' => 'spa', 'Sp1g03090' => 'spa', 'Sp1g05480' => 'spa', 'Sp2g07860' => 'spa', 'Sp2g08430' => 'spa', 'Sp2g08440' => 'spa', 'Sp2g26200' => 'spa', 'Sp4g13170' => 'spa', 'Sp6g33840' => 'spa', 'SpUn1204_0010' => 'spa', 'TAR365G0908' => 'tar', 'TAR381G1270' => 'tar', 'TAR381G1651' => 'tar', 'TAR625G1131' => 'tar', 'TAR633G0962' => 'tar', 'TAR633G1729' => 'tar', 'TAR633G1864' => 'tar', 'TAR636G0221' => 'tar', 'TAR636G0314' => 'tar', 'TAR636G3202' => 'tar', 'THA.LOC104800805' => 'tha', 'THA.LOC104801096' => 'tha', 'THA.LOC104801555' => 'tha', 'THA.LOC104808491' => 'tha', 'THA.LOC104808595' => 'tha', 'THA.LOC104815985' => 'tha', 'THA.LOC104822250' => 'tha', 'THA.LOC104826071' => 'tha', 'Thecc.01G265200' => 'tca', 'Thecc.01G265300' => 'tca', 'Thecc.01G265700' => 'tca', 'Thecc.03G109100' => 'tca', 'Thecc.04G245900' => 'tca', 'Thecc.04G246000' => 'tca', 'Thhalv10003334m.g' => 'esa', 'Thhalv10005508m.g' => 'esa', 'Thhalv10005643m.g' => 'esa', 'Thhalv10007316m.g' => 'esa', 'Thhalv10009006m.g' => 'esa', 'Thhalv10009309m.g' => 'esa', 'Thhalv10014917m.g' => 'esa', 'Thhalv10014919m.g' => 'esa', 'Thhalv10015393m.g' => 'esa', 'Thhalv10016515m.g' => 'esa', 'Thhalv10029242m.g' => 'esa', 'TPR.G16654' => 'tpr', 'TPR.G20589' => 'tpr', 'TPR.G23029' => 'tpr', 'TPR.G27731' => 'tpr', 'TPR.G28889' => 'tpr', 'TPR.G28899' => 'tpr', 'TPR.G30846' => 'tpr', 'TPR.G5452' => 'tpr', 'TPR.G5713' => 'tpr', 'TPR.G9046' => 'tpr', 'TPR.G9061' => 'tpr', 'TWI09G1075' => 'twi', 'TWI12G0806' => 'twi', 'TWI18G0108' => 'twi', 'TWI53G1361' => 'twi', 'TWI73G0185' => 'twi', 'TWI73G0427' => 'twi', 'unitig_37.g12001' => 'ugi', 'unitig_747.g21660' => 'ugi', 'unitig_748.g7232' => 'ugi', 'unitig_748.g7315' => 'ugi', 'unitig_85.g27262' => 'ugi', 'unitig_92.g28220' => 'ugi', 'vmacro02632' => 'vma', 'vmacro08410' => 'vma', 'vmacro08411' => 'vma', 'vmacro15407' => 'vma', 'VMungo0251G3619' => 'vmu', 'VMungo0720G1204' => 'vmu', 'VMungo0720G1918' => 'vmu', 'VMungo0720G2387' => 'vmu', 'VMungo0720G2961' => 'vmu', 'VMungo1215G2154' => 'vmu', 'VMungo1383G2411' => 'vmu', 'Zm00001eb051130' => 'zma', 'Zm00001eb116830' => 'zma', 'Zm00001eb116850' => 'zma', 'Zm00001eb151740' => 'zma', 'Zm00001eb292360' => 'zma', 'Zm00001eb301640' => 'zma' ) $gf_id = 'HOM05D000856' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000856' ) $data_identifier = 'HOM05D000856' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 13, 'ath' => (int) 10, 'atr' => (int) 1, 'acertr' => (int) 8, 'cqu' => (int) 6, 'bca' => (int) 21, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 11, 'car' => (int) 9, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 8, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 5, 'fan' => (int) 16, 'fve' => (int) 6, 'gma' => (int) 11, 'ghi' => (int) 19, 'gra' => (int) 9, 'vvi' => (int) 7, 'han' => (int) 17, 'cav' => (int) 5, 'hma' => (int) 2, 'vpl' => (int) 2, 'sun' => (int) 7, 'lal' => (int) 9, 'lja' => (int) 5, 'lonja' => (int) 9, 'lsa' => (int) 5, 'mes' => (int) 8, 'mpo' => (int) 3, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 10, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 15, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 9, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 9, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 6, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 5, 'spa' => (int) 10, 'tar' => (int) 10, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 11, 'tpr' => (int) 11, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 4, 'vmu' => (int) 7, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb301640' $species_info = array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ) $local_species = 'qlo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000856', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p00010' => 'bna', 'A03p04160' => 'bna', 'A03p17160' => 'bna', 'A04p23370' => 'bna', 'A05p14860' => 'bna', 'A08p37020' => 'bna', 'A09p08050' => 'bna', 'A09p66800' => 'bna', 'A09p67940' => 'bna', 'A10p02680' => 'bna', 'A10p05320' => 'bna', 'Aa31LG1G20560' => 'aar', 'Aa31LG1G20610' => 'aar', 'Aa31LG1G7810' => 'aar', 'Aa31LG5G3590' => 'aar', 'Aa31LG5G6140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3819' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4683' => 'aag', 'Actinidia04480' => 'ach', 'Actinidia05466' => 'ach', 'Actinidia08445' => 'ach', 'Actinidia21170' => 'ach', 'Actinidia24812' => 'ach', 'Actinidia24951' => 'ach', 'Actinidia40088' => 'ach', 'Ah.02g111660' => 'amhyb', 'Ah.11g048900' => 'amhyb', 'Ah.11g049910' => 'amhyb', 'AL1G13870' => 'aly', 'AL1G13880' => 'aly', 'AL1G16760' => 'aly', 'AL390U10020' => 'aly', 'AL4G25520' => 'aly', 'AL6G19890' => 'aly', 'AL6G19900' => 'aly', 'AL6G19910' => 'aly', 'AL8G40100' => 'aly', 'Aqoxy2G03562' => 'aox', 'Aqoxy5G00316' => 'aox', 'Aqoxy5G00926' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1628KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1H403S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2FU6SJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.882I6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8YRY2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YN1SN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AF70II' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZA8L1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F916KL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHRD8H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KTZ8QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S22EMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8M29T' => 'arhy', 'AT1G04270' => 'ath', 'AT1G04280' => 'ath', 'AT1G06750' => 'ath', 'AT1G33850' => 'ath', 'AT2G30630' => 'ath', 'AT5G09490' => 'ath', 'AT5G09500' => 'ath', 'AT5G09510' => 'ath', 'AT5G43640' => 'ath', 'AT5G63070' => 'ath', 'ATR0605G315' => 'atr', 'Atru.chr11.175' => 'acertr', 'Atru.chr11.653' => 'acertr', 'Atru.chr3.1616' => 'acertr', 'Atru.chr4.2230' => 'acertr', 'Atru.chr4.2232' => 'acertr', 'Atru.chr5.1598' => 'acertr', 'Atru.chr5.1600' => 'acertr', 'Atru.chr5.2188' => 'acertr', 'AUR62008326' => 'cqu', 'AUR62011922' => 'cqu', 'AUR62011924' => 'cqu', 'AUR62021771' => 'cqu', 'AUR62032237' => 'cqu', 'AUR62032240' => 'cqu', 'BcaB01g05572' => 'bca', 'BcaB02g10337' => 'bca', 'BcaB04g19944' => 'bca', 'BcaB05g21548' => 'bca', 'BcaB05g21549' => 'bca', 'BcaB05g23227' => 'bca', 'BcaB06g26256' => 'bca', 'BcaB06g26257' => 'bca', 'BcaB06g28379' => 'bca', 'BcaC02g11159' => 'bca', 'BcaC03g13258' => 'bca', 'BcaC03g13259' => 'bca', 'BcaC05g24456' => 'bca', 'BcaC05g24457' => 'bca', 'BcaC07g36922' => 'bca', 'BcaC07g36923' => 'bca', 'BcaC07g42050' => 'bca', 'BcaC07g42176' => 'bca', 'BcaC07g42195' => 'bca', 'BcaC07g42196' => 'bca', 'BcaNung06674' => 'bca', 'BolC2t06351H' => 'bol', 'BolC2t06352H' => 'bol', 'BolC3t12993H' => 'bol', 'BolC4t23525H' => 'bol', 'BolC4t27475H' => 'bol', 'BolC5t29025H' => 'bol', 'BolC5t29026H' => 'bol', 'BolC8t46898H' => 'bol', 'BolC8t46899H' => 'bol', 'BolC8t52630H' => 'bol', 'BolC8t52765H' => 'bol', 'BolC9t53824H' => 'bol', 'BraA03t09760Z' => 'bra', 'BraA03t10990Z' => 'bra', 'BraA05t20413Z' => 'bra', 'BraA08t35602Z' => 'bra', 'BraA09t36458Z' => 'bra', 'BraA09t42018Z' => 'bra', 'BraA09t42129Z' => 'bra', 'BraA10t42536Z' => 'bra', 'BraA10t42537Z' => 'bra', 'C01p10690' => 'bna', 'C02p03890' => 'bna', 'C02p03900' => 'bna', 'C03p04620' => 'bna', 'C04p19870' => 'bna', 'C04p59670' => 'bna', 'C05p02460' => 'bna', 'C05p02470' => 'bna', 'C08p00980' => 'bna', 'C08p00990' => 'bna', 'C08p51030' => 'bna', 'C08p52360' => 'bna', 'C09p09120' => 'bna', 'CAN.G19.15' => 'can', 'CAN.G251.10' => 'can', 'CAN.G251.9' => 'can', 'CAN.G398.24' => 'can', 'CAN.G410.32' => 'can', 'CAN.G881.2' => 'can', 'CANSAT01G3025' => 'cansat', 'CANSAT78G1211' => 'cansat', 'CANSAT78G1218' => 'cansat', 'CANSAT78G1521' => 'cansat', 'CANSAT78G1670' => 'cansat', 'CARHR003600' => 'chi', 'CARHR003610' => 'chi', 'CARHR006290' => 'chi', 'CARHR006430' => 'chi', 'CARHR124110' => 'chi', 'CARHR203870' => 'chi', 'CARHR203880' => 'chi', 'CARHR203890' => 'chi', 'CARHR276880' => 'chi', 'Carub.0001s0346' => 'cru', 'Carub.0001s0347' => 'cru', 'Carub.0001s0607' => 'cru', 'Carub.0003s2768' => 'cru', 'Carub.0003s2769' => 'cru', 'Carub.0004s1178' => 'cru', 'Carub.0006s0806' => 'cru', 'Carub.0006s0807' => 'cru', 'Carub.0006s0808' => 'cru', 'Carub.0008s0501' => 'cru', 'Carub.0008s2379' => 'cru', 'Ca_08655_v3' => 'car', 'Ca_08922_v3' => 'car', 'Ca_08923_v3' => 'car', 'Ca_09119_v3' => 'car', 'Ca_09703_v3' => 'car', 'Ca_09705_v3' => 'car', 'Ca_09835_v3' => 'car', 'Ca_26403_v3' => 'car', 'Ca_30719_v3' => 'car', 'CBR_g17958' => 'cbr', 'CBR_g40516' => 'cbr', 'Cc00_g05350' => 'ccan', 'Cc01_g18690' => 'ccan', 'Cc03_g04830' => 'ccan', 'Cc03_g04850' => 'ccan', 'CDE02G4469' => 'cde', 'CDE06G0883' => 'cde', 'CDE06G1295' => 'cde', 'CDE06G1390' => 'cde', 'CDE07G0584' => 'cde', 'CDE07G1084' => 'cde', 'CDE08G1259' => 'cde', 'Cfa002341' => 'cfa', 'Cfa024337' => 'cfa', 'Ciclev10004749m.g' => 'ccl', 'Ciclev10006127m.g' => 'ccl', 'Ciclev10019720m.g' => 'ccl', 'Ciclev10022652m.g' => 'ccl', 'CiPaw.01G190400' => 'cil', 'CiPaw.01G190500' => 'cil', 'CiPaw.02G116400' => 'cil', 'CiPaw.02G116500' => 'cil', 'CiPaw.04G183000' => 'cil', 'CiPaw.04G183300' => 'cil', 'ClCG05G004610' => 'cla', 'ClCG05G004620' => 'cla', 'ClCG06G006730' => 'cla', 'ClCG06G006740' => 'cla', 'ClCG11G003690' => 'cla', 'COL.COLO4_08276' => 'col', 'COL.COLO4_08277' => 'col', 'COL.COLO4_15787' => 'col', 'COL.COLO4_15789' => 'col', 'Cpa.g.c44815' => 'cpa', 'Cpa.g.sc52.144' => 'cpa', 'Cpa.g.sc58.46' => 'cpa', 'Cpa.g.sc58.47' => 'cpa', 'Cre08.g360900' => 'cre', 'CsaV3_2G013030' => 'csa', 'CsaV3_2G013050' => 'csa', 'CsaV3_2G015620' => 'csa', 'CsaV3_3G012590' => 'csa', 'CsaV3_3G012600' => 'csa', 'CSS0001641' => 'camsi', 'CSS0008310' => 'camsi', 'CSS0013011' => 'camsi', 'CSS0017147' => 'camsi', 'CSS0022970' => 'camsi', 'CSS0025655' => 'camsi', 'CSS0028665' => 'camsi', 'CSS0029117' => 'camsi', 'CSS0032024' => 'camsi', 'CSS0039681' => 'camsi', 'CSS0046516' => 'camsi', 'CSS0050307' => 'camsi', 'DCAR_005871' => 'dca', 'DCAR_007342' => 'dca', 'DCAR_024228' => 'dca', 'DCAR_027277' => 'dca', 'DCAR_030718' => 'dca', 'Dinv20287' => 'din', 'Dinv22461' => 'din', 'Dinv22464' => 'din', 'Dinv29912' => 'din', 'Dinv29913' => 'din', 'Dinv34580' => 'din', 'Dinv34582' => 'din', 'Dinv44632' => 'din', 'Duzib052G0266' => 'dzi', 'Duzib133G0907' => 'dzi', 'Duzib133G1034' => 'dzi', 'Duzib138G0207' => 'dzi', 'Duzib138G0491' => 'dzi', 'Duzib151G0812' => 'dzi', 'Duzib151G1166' => 'dzi', 'Duzib168G0192' => 'dzi', 'Duzib211G0077' => 'dzi', 'Duzib212G0429' => 'dzi', 'Duzib212G0472' => 'dzi', 'ECA233G2617' => 'eca', 'ECA236G4188' => 'eca', 'ECA240G0936' => 'eca', 'ECA240G1129' => 'eca', 'ECA247G0623' => 'eca', 'EL10Ac5g10451' => 'bvu', 'EL10Ac5g10453' => 'bvu', 'EL10Ac5g10894' => 'bvu', 'Eucgr.H00192' => 'egr', 'Eucgr.H00193' => 'egr', 'Eucgr.H00194' => 'egr', 'Eucgr.J01562' => 'egr', 'Eucgr.K03301' => 'egr', 'FAN02G0632' => 'fan', 'FAN05G5378' => 'fan', 'FAN09G3247' => 'fan', 'FAN12G0435' => 'fan', 'FAN12G2426' => 'fan', 'FAN14G1707' => 'fan', 'FAN14G4725' => 'fan', 'FAN15G2071' => 'fan', 'FAN17G3065' => 'fan', 'FAN19G1376' => 'fan', 'FAN20G0354' => 'fan', 'FAN20G2429' => 'fan', 'FAN20G2658' => 'fan', 'FAN24G2343' => 'fan', 'FAN27G2362' => 'fan', 'FAN28G1765' => 'fan', 'FvH4_1g16020' => 'fve', 'FvH4_2g04890' => 'fve', 'FvH4_2g22270' => 'fve', 'FvH4_4g02630' => 'fve', 'FvH4_4g02640' => 'fve', 'FvH4_6g02650' => 'fve', 'Glyma.02G140600' => 'gma', 'Glyma.03G159900' => 'gma', 'Glyma.05G234800' => 'gma', 'Glyma.07G269600' => 'gma', 'Glyma.08G042300' => 'gma', 'Glyma.10G033500' => 'gma', 'Glyma.10G185200' => 'gma', 'Glyma.17G004300' => 'gma', 'Glyma.19G161900' => 'gma', 'Glyma.20G205100' => 'gma', 'Glyma.20G205200' => 'gma', 'Gohir.A01G139101' => 'ghi', 'Gohir.A02G035600' => 'ghi', 'Gohir.A02G117901' => 'ghi', 'Gohir.A07G210100' => 'ghi', 'Gohir.A07G210200' => 'ghi', 'Gohir.A08G061100' => 'ghi', 'Gohir.A09G223000' => 'ghi', 'Gohir.A09G223100' => 'ghi', 'Gohir.A10G113900' => 'ghi', 'Gohir.A10G114000' => 'ghi', 'Gohir.D02G042300' => 'ghi', 'Gohir.D07G216100' => 'ghi', 'Gohir.D07G216200' => 'ghi', 'Gohir.D08G070400' => 'ghi', 'Gohir.D09G225000' => 'ghi', 'Gohir.D09G225100' => 'ghi', 'Gohir.D10G152300' => 'ghi', 'Gohir.D10G153200' => 'ghi', 'Gohir.D11G133701' => 'ghi', 'Gorai.004G074100' => 'gra', 'Gorai.005G046800' => 'gra', 'Gorai.006G246500' => 'gra', 'Gorai.006G246600' => 'gra', 'Gorai.007G142900' => 'gra', 'Gorai.011G171000' => 'gra', 'Gorai.011G171100' => 'gra', 'Gorai.013G104300' => 'gra', 'Gorai.013G104400' => 'gra', 'GSVIVG01000754001' => 'vvi', 'GSVIVG01000756001' => 'vvi', 'GSVIVG01010903001' => 'vvi', 'GSVIVG01017623001' => 'vvi', 'GSVIVG01018113001' => 'vvi', 'GSVIVG01018116001' => 'vvi', 'GSVIVG01018118001' => 'vvi', 'HanXRQChr03g0076211' => 'han', 'HanXRQChr03g0092431' => 'han', 'HanXRQChr03g0092441' => 'han', 'HanXRQChr03g0092591' => 'han', 'HanXRQChr03g0092671' => 'han', 'HanXRQChr03g0092681' => 'han', 'HanXRQChr03g0092691' => 'han', 'HanXRQChr03g0092701' => 'han', 'HanXRQChr03g0092721' => 'han', 'HanXRQChr03g0092731' => 'han', 'HanXRQChr04g0113681' => 'han', 'HanXRQChr10g0281371' => 'han', 'HanXRQChr11g0337141' => 'han', 'HanXRQChr13g0424521' => 'han', 'HanXRQChr13g0424531' => 'han', 'HanXRQChr13g0424541' => 'han', 'HanXRQChr16g0498221' => 'han', 'Haze_04377' => 'cav', 'Haze_11298' => 'cav', 'Haze_24547' => 'cav', 'Haze_24550' => 'cav', 'Haze_26587' => 'cav', 'Hma1.2p1_0650F.1_g195410' => 'hma', 'Hma1.2p1_0893F.1_g233470' => 'hma', 'HPP92_006508' => 'vpl', 'HPP92_024780' => 'vpl', 'Hund02688' => 'sun', 'Hund09380' => 'sun', 'Hund09381' => 'sun', 'Hund09832' => 'sun', 'Hund09833' => 'sun', 'Hund11351' => 'sun', 'Hund11513' => 'sun', 'Lalb_Chr06g0162591' => 'lal', 'Lalb_Chr06g0162601' => 'lal', 'Lalb_Chr06g0169321' => 'lal', 'Lalb_Chr09g0330951' => 'lal', 'Lalb_Chr16g0387631' => 'lal', 'Lalb_Chr21g0306241' => 'lal', 'Lalb_Chr25g0290051' => 'lal', 'Lalb_Chr25g0290061' => 'lal', 'Lalb_Chr25g0290071' => 'lal', 'Lj1g0003876' => 'lja', 'Lj1P1207T36' => 'lonja', 'Lj2C1156G12' => 'lonja', 'Lj3A793G39' => 'lonja', 'Lj3C580G2' => 'lonja', 'Lj3C780G2' => 'lonja', 'Lj3C780T4' => 'lonja', 'Lj3C793G9' => 'lonja', 'Lj4g0012960' => 'lja', 'Lj5g0021252' => 'lja', 'Lj5g0021484' => 'lja', 'Lj5g0024528' => 'lja', 'Lj6A399T12' => 'lonja', 'Lj6A656G65' => 'lonja', 'Lsat_1_v5_gn_3_125500' => 'lsa', 'Lsat_1_v5_gn_3_125540' => 'lsa', 'Lsat_1_v5_gn_5_72701' => 'lsa', 'Lsat_1_v5_gn_8_91560' => 'lsa', 'Lsat_1_v5_gn_9_9640' => 'lsa', 'Manes.01G200600' => 'mes', 'Manes.01G200700' => 'mes', 'Manes.03G168900' => 'mes', 'Manes.03G169000' => 'mes', 'Manes.05G085801' => 'mes', 'Manes.05G086200' => 'mes', 'Manes.15G036700' => 'mes', 'Manes.15G036900' => 'mes', 'Mapoly0004s0172' => 'mpo', 'Mapoly0023s0001' => 'mpo', 'Mapoly0142s0012' => 'mpo', 'MBI01_g32854_MAGBIO' => 'mbi', 'MBI11_g24427_MAGBIO' => 'mbi', 'MBI11_g47319_MAGBIO' => 'mbi', 'MCO01G433' => 'mco', 'MD00G1187800' => 'mdo', 'MD04G1226500' => 'mdo', 'MD05G1203900' => 'mdo', 'MD10G1191100' => 'mdo', 'MD12G1243500' => 'mdo', 'MD13G1207000' => 'mdo', 'MD13G1207100' => 'mdo', 'MD16G1208600' => 'mdo', 'Medtr1g050352' => 'mtr', 'Medtr1g070385' => 'mtr', 'Medtr1g070450' => 'mtr', 'Medtr1g075200' => 'mtr', 'Medtr1g075250' => 'mtr', 'Medtr1g075260' => 'mtr', 'Medtr1g475250' => 'mtr', 'Medtr4g075450' => 'mtr', 'Medtr7g096300' => 'mtr', 'Medtr8g105110' => 'mtr', 'MELO3C006470.2' => 'cme', 'MELO3C006471.2' => 'cme', 'MELO3C020772.2' => 'cme', 'MELO3C026780.2' => 'cme', 'MELO3C026781.2' => 'cme', 'Migut.D00390' => 'egut', 'Migut.G00435' => 'egut', 'Migut.G00436' => 'egut', 'Migut.G00718' => 'egut', 'MSTRG.21891' => 'ama', 'MSTRG.26910' => 'ama', 'MSTRG.4099' => 'ama', 'MSTRG.9925' => 'ama', 'Nitab4.5_0000165g0010' => 'nta', 'Nitab4.5_0000209g0180' => 'nta', 'Nitab4.5_0000244g0440' => 'nta', 'Nitab4.5_0000525g0220' => 'nta', 'Nitab4.5_0001597g0020' => 'nta', 'Nitab4.5_0001878g0040' => 'nta', 'Nitab4.5_0001878g0060' => 'nta', 'Nitab4.5_0002838g0100' => 'nta', 'Nitab4.5_0002838g0120' => 'nta', 'Nitab4.5_0004798g0030' => 'nta', 'Nitab4.5_0005420g0010' => 'nta', 'Nitab4.5_0005507g0010' => 'nta', 'Nitab4.5_0005574g0020' => 'nta', 'Nitab4.5_0005838g0010' => 'nta', 'Nitab4.5_0010580g0020' => 'nta', 'Nn1g02599' => 'nnu', 'Nn1g02608' => 'nnu', 'Nn3g17742' => 'nnu', 'Nn3g19534' => 'nnu', 'Nn3g19535' => 'nnu', 'Oeu008790.1' => 'oeu', 'Oeu008792.1' => 'oeu', 'Oeu032590.1' => 'oeu', 'Oeu035349.1' => 'oeu', 'Oeu049791.1' => 'oeu', 'Os01g0774500' => 'osa', 'Os03g0628800' => 'osa', 'Os03g0798600' => 'osa', 'Os05g0508800' => 'osa', 'Peaxi162Scf00036g02018' => 'pax', 'Peaxi162Scf00578g00032' => 'pax', 'Peaxi162Scf00578g00317' => 'pax', 'Peaxi162Scf00785g00114' => 'pax', 'Peaxi162Scf00813g00119' => 'pax', 'Peaxi162Scf00906g00227' => 'pax', 'PGR004G0875' => 'pgr', 'PGR004G2424' => 'pgr', 'PGR031G1239' => 'pgr', 'PGR031G2474' => 'pgr', 'PGR044G0423' => 'pgr', 'PGSC0003DMG400001128' => 'stu', 'PGSC0003DMG400007336' => 'stu', 'PGSC0003DMG400016318' => 'stu', 'PGSC0003DMG400016319' => 'stu', 'PGSC0003DMG400018074' => 'stu', 'Phvul.001G157700' => 'pvu', 'Phvul.002G148550' => 'pvu', 'Phvul.002G320200' => 'pvu', 'Phvul.003G089200' => 'pvu', 'Phvul.007G126000' => 'pvu', 'Phvul.007G126100' => 'pvu', 'Phvul.007G178000' => 'pvu', 'Phvul.007G178200' => 'pvu', 'Potri.002G043000' => 'ptr', 'Potri.002G043200' => 'ptr', 'Potri.003G123750' => 'ptr', 'Potri.005G055401' => 'ptr', 'Potri.005G219700' => 'ptr', 'Potri.005G220000' => 'ptr', 'Potri.008G161901' => 'ptr', 'Potri.008G162000' => 'ptr', 'Potri.008G162400' => 'ptr', 'Potri.010G076900' => 'ptr', 'Pp3c12_9180' => 'ppa', 'Pp3c13_19770' => 'ppa', 'Pp3c14_22950' => 'ppa', 'Pp3c16_12160' => 'ppa', 'Pp3c27_7820' => 'ppa', 'Pp3c2_3490' => 'ppa', 'Pp3c3_23700' => 'ppa', 'Pp3c3_36520' => 'ppa', 'Pp3c4_15250' => 'ppa', 'PRCOL_00007002' => 'pco', 'Prupe.1G030600' => 'ppe', 'Prupe.1G030700' => 'ppe', 'Prupe.6G345200' => 'ppe', 'Prupe.8G230300' => 'ppe', 'Prupe.8G230500' => 'ppe', 'Psat3g059600' => 'psa', 'Psat5g200920' => 'psa', 'Psat6g056440' => 'psa', 'Psat6g057360' => 'psa', 'Psat6g134120' => 'psa', 'Psat6g134160' => 'psa', 'Psat7g008640' => 'psa', 'Psat7g185240' => 'psa', 'PSO017G1330' => 'pso', 'PSO063G6097' => 'pso', 'PSO170G0835' => 'pso', 'PSO170G2499' => 'pso', 'PSO210G5058' => 'pso', 'PSO210G6154' => 'pso', 'PSO585G0031' => 'pso', 'PSO832G0264' => 'pso', 'PSO832G4288' => 'pso', 'QL03p027355' => 'qlo', 'QL03p027430' => 'qlo', 'QL04p081380' => 'qlo', 'QL06p015642' => 'qlo', 'QL06p015650' => 'qlo', 'QL06p015686' => 'qlo', 'QL12p042927' => 'qlo', 'QL93p1863_0035' => 'qlo', 'RcHm_v2.0_Chr3g0450581' => 'rch', 'RcHm_v2.0_Chr4g0390371' => 'rch', 'RcHm_v2.0_Chr4g0390381' => 'rch', 'RcHm_v2.0_Chr4g0390491' => 'rch', 'RcHm_v2.0_Chr4g0390501' => 'rch', 'RcHm_v2.0_Chr6g0289231' => 'rch', 'Rhsim04G0190400' => 'rsi', 'Rhsim04G0190500' => 'rsi', 'Rhsim04G0190600' => 'rsi', 'Rhsim13G0031400' => 'rsi', 'Rhsim13G0165600' => 'rsi', 'RhsimUnG0114600' => 'rsi', 'RhsimUnG0114700' => 'rsi', 'Sabra02G0034800' => 'sbr', 'Sabra02G0035100' => 'sbr', 'Sabra05G0168600' => 'sbr', 'Sabra05G0168800' => 'sbr', 'Sabra08G0123700' => 'sbr', 'Sabra10G0031900' => 'sbr', 'Sabra13G0039000' => 'sbr', 'SalBow2G0782' => 'sbo', 'SalBow2G1403' => 'sbo', 'SalBow4G0074' => 'sbo', 'SalBow4G2635' => 'sbo', 'SalBow5G3010' => 'sbo', 'Sc05g0000870' => 'sci', 'Sc05g0000890' => 'sci', 'Sc13g0005000' => 'sci', 'Sc13g0005030' => 'sci', 'Sc19g0003790' => 'sci', 'Sc19g0003800' => 'sci', 'Sed0003467' => 'sed', 'Sed0009355' => 'sed', 'Sed0009894' => 'sed', 'Sed0011972' => 'sed', 'Sed0021483' => 'sed', 'Sed0021750' => 'sed', 'Sed0026279' => 'sed', 'SEGI_05312' => 'sgi', 'SEGI_10112' => 'sgi', 'SEGI_15835' => 'sgi', 'SEGI_30386' => 'sgi', 'SEGI_34122' => 'sgi', 'SEGI_35063' => 'sgi', 'SGA_v2.0_scaffold101G29794' => 'sas', 'SGA_v2.0_scaffold1G00573' => 'sas', 'SGA_v2.0_scaffold79G25637' => 'sas', 'SGA_v2.0_scaffold88G27283' => 'sas', 'SGA_v2.0_scaffold88G27285' => 'sas', 'SGA_v2.0_scaffold88G27331' => 'sas', 'SHI09937' => 'shi', 'SMO119G0302' => 'smo', 'SMO137G0231' => 'smo', 'SMO367G1151' => 'smo', 'Solyc02g082000.3' => 'sly', 'Solyc06g031670.3' => 'sly', 'Solyc06g053810.3' => 'sly', 'Solyc07g025457.1' => 'sly', 'Solyc08g059740.1' => 'sly', 'Solyc08g059750.3' => 'sly', 'Solyc09g083370.3' => 'sly', 'Solyc12g038950.3' => 'sly', 'Sopen02g026630' => 'spe', 'Sopen06g018930' => 'spe', 'Sopen06g018940' => 'spe', 'Sopen08g009460' => 'spe', 'Sopen09g032290' => 'spe', 'Sp1g03080' => 'spa', 'Sp1g03090' => 'spa', 'Sp1g05480' => 'spa', 'Sp2g07860' => 'spa', 'Sp2g08430' => 'spa', 'Sp2g08440' => 'spa', 'Sp2g26200' => 'spa', 'Sp4g13170' => 'spa', 'Sp6g33840' => 'spa', 'SpUn1204_0010' => 'spa', 'TAR365G0908' => 'tar', 'TAR381G1270' => 'tar', 'TAR381G1651' => 'tar', 'TAR625G1131' => 'tar', 'TAR633G0962' => 'tar', 'TAR633G1729' => 'tar', 'TAR633G1864' => 'tar', 'TAR636G0221' => 'tar', 'TAR636G0314' => 'tar', 'TAR636G3202' => 'tar', 'THA.LOC104800805' => 'tha', 'THA.LOC104801096' => 'tha', 'THA.LOC104801555' => 'tha', 'THA.LOC104808491' => 'tha', 'THA.LOC104808595' => 'tha', 'THA.LOC104815985' => 'tha', 'THA.LOC104822250' => 'tha', 'THA.LOC104826071' => 'tha', 'Thecc.01G265200' => 'tca', 'Thecc.01G265300' => 'tca', 'Thecc.01G265700' => 'tca', 'Thecc.03G109100' => 'tca', 'Thecc.04G245900' => 'tca', 'Thecc.04G246000' => 'tca', 'Thhalv10003334m.g' => 'esa', 'Thhalv10005508m.g' => 'esa', 'Thhalv10005643m.g' => 'esa', 'Thhalv10007316m.g' => 'esa', 'Thhalv10009006m.g' => 'esa', 'Thhalv10009309m.g' => 'esa', 'Thhalv10014917m.g' => 'esa', 'Thhalv10014919m.g' => 'esa', 'Thhalv10015393m.g' => 'esa', 'Thhalv10016515m.g' => 'esa', 'Thhalv10029242m.g' => 'esa', 'TPR.G16654' => 'tpr', 'TPR.G20589' => 'tpr', 'TPR.G23029' => 'tpr', 'TPR.G27731' => 'tpr', 'TPR.G28889' => 'tpr', 'TPR.G28899' => 'tpr', 'TPR.G30846' => 'tpr', 'TPR.G5452' => 'tpr', 'TPR.G5713' => 'tpr', 'TPR.G9046' => 'tpr', 'TPR.G9061' => 'tpr', 'TWI09G1075' => 'twi', 'TWI12G0806' => 'twi', 'TWI18G0108' => 'twi', 'TWI53G1361' => 'twi', 'TWI73G0185' => 'twi', 'TWI73G0427' => 'twi', 'unitig_37.g12001' => 'ugi', 'unitig_747.g21660' => 'ugi', 'unitig_748.g7232' => 'ugi', 'unitig_748.g7315' => 'ugi', 'unitig_85.g27262' => 'ugi', 'unitig_92.g28220' => 'ugi', 'vmacro02632' => 'vma', 'vmacro08410' => 'vma', 'vmacro08411' => 'vma', 'vmacro15407' => 'vma', 'VMungo0251G3619' => 'vmu', 'VMungo0720G1204' => 'vmu', 'VMungo0720G1918' => 'vmu', 'VMungo0720G2387' => 'vmu', 'VMungo0720G2961' => 'vmu', 'VMungo1215G2154' => 'vmu', 'VMungo1383G2411' => 'vmu', 'Zm00001eb051130' => 'zma', 'Zm00001eb116830' => 'zma', 'Zm00001eb116850' => 'zma', 'Zm00001eb151740' => 'zma', 'Zm00001eb292360' => 'zma', 'Zm00001eb301640' => 'zma' ), 'gf_id' => 'HOM05D000856', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000856' ), 'data_identifier' => 'HOM05D000856', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000856', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p00010' => 'bna', 'A03p04160' => 'bna', 'A03p17160' => 'bna', 'A04p23370' => 'bna', 'A05p14860' => 'bna', 'A08p37020' => 'bna', 'A09p08050' => 'bna', 'A09p66800' => 'bna', 'A09p67940' => 'bna', 'A10p02680' => 'bna', 'A10p05320' => 'bna', 'Aa31LG1G20560' => 'aar', 'Aa31LG1G20610' => 'aar', 'Aa31LG1G7810' => 'aar', 'Aa31LG5G3590' => 'aar', 'Aa31LG5G6140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3819' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4683' => 'aag', 'Actinidia04480' => 'ach', 'Actinidia05466' => 'ach', 'Actinidia08445' => 'ach', 'Actinidia21170' => 'ach', 'Actinidia24812' => 'ach', 'Actinidia24951' => 'ach', 'Actinidia40088' => 'ach', 'Ah.02g111660' => 'amhyb', 'Ah.11g048900' => 'amhyb', 'Ah.11g049910' => 'amhyb', 'AL1G13870' => 'aly', 'AL1G13880' => 'aly', 'AL1G16760' => 'aly', 'AL390U10020' => 'aly', 'AL4G25520' => 'aly', 'AL6G19890' => 'aly', 'AL6G19900' => 'aly', 'AL6G19910' => 'aly', 'AL8G40100' => 'aly', 'Aqoxy2G03562' => 'aox', 'Aqoxy5G00316' => 'aox', 'Aqoxy5G00926' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1628KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1H403S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2FU6SJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.882I6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8YRY2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YN1SN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AF70II' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZA8L1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F916KL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHRD8H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KTZ8QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S22EMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8M29T' => 'arhy', 'AT1G04270' => 'ath', 'AT1G04280' => 'ath', 'AT1G06750' => 'ath', 'AT1G33850' => 'ath', 'AT2G30630' => 'ath', 'AT5G09490' => 'ath', 'AT5G09500' => 'ath', 'AT5G09510' => 'ath', 'AT5G43640' => 'ath', 'AT5G63070' => 'ath', 'ATR0605G315' => 'atr', 'Atru.chr11.175' => 'acertr', 'Atru.chr11.653' => 'acertr', 'Atru.chr3.1616' => 'acertr', 'Atru.chr4.2230' => 'acertr', 'Atru.chr4.2232' => 'acertr', 'Atru.chr5.1598' => 'acertr', 'Atru.chr5.1600' => 'acertr', 'Atru.chr5.2188' => 'acertr', 'AUR62008326' => 'cqu', 'AUR62011922' => 'cqu', 'AUR62011924' => 'cqu', 'AUR62021771' => 'cqu', 'AUR62032237' => 'cqu', 'AUR62032240' => 'cqu', 'BcaB01g05572' => 'bca', 'BcaB02g10337' => 'bca', 'BcaB04g19944' => 'bca', 'BcaB05g21548' => 'bca', 'BcaB05g21549' => 'bca', 'BcaB05g23227' => 'bca', 'BcaB06g26256' => 'bca', 'BcaB06g26257' => 'bca', 'BcaB06g28379' => 'bca', 'BcaC02g11159' => 'bca', 'BcaC03g13258' => 'bca', 'BcaC03g13259' => 'bca', 'BcaC05g24456' => 'bca', 'BcaC05g24457' => 'bca', 'BcaC07g36922' => 'bca', 'BcaC07g36923' => 'bca', 'BcaC07g42050' => 'bca', 'BcaC07g42176' => 'bca', 'BcaC07g42195' => 'bca', 'BcaC07g42196' => 'bca', 'BcaNung06674' => 'bca', 'BolC2t06351H' => 'bol', 'BolC2t06352H' => 'bol', 'BolC3t12993H' => 'bol', 'BolC4t23525H' => 'bol', 'BolC4t27475H' => 'bol', 'BolC5t29025H' => 'bol', 'BolC5t29026H' => 'bol', 'BolC8t46898H' => 'bol', 'BolC8t46899H' => 'bol', 'BolC8t52630H' => 'bol', 'BolC8t52765H' => 'bol', 'BolC9t53824H' => 'bol', 'BraA03t09760Z' => 'bra', 'BraA03t10990Z' => 'bra', 'BraA05t20413Z' => 'bra', 'BraA08t35602Z' => 'bra', 'BraA09t36458Z' => 'bra', 'BraA09t42018Z' => 'bra', 'BraA09t42129Z' => 'bra', 'BraA10t42536Z' => 'bra', 'BraA10t42537Z' => 'bra', 'C01p10690' => 'bna', 'C02p03890' => 'bna', 'C02p03900' => 'bna', 'C03p04620' => 'bna', 'C04p19870' => 'bna', 'C04p59670' => 'bna', 'C05p02460' => 'bna', 'C05p02470' => 'bna', 'C08p00980' => 'bna', 'C08p00990' => 'bna', 'C08p51030' => 'bna', 'C08p52360' => 'bna', 'C09p09120' => 'bna', 'CAN.G19.15' => 'can', 'CAN.G251.10' => 'can', 'CAN.G251.9' => 'can', 'CAN.G398.24' => 'can', 'CAN.G410.32' => 'can', 'CAN.G881.2' => 'can', 'CANSAT01G3025' => 'cansat', 'CANSAT78G1211' => 'cansat', 'CANSAT78G1218' => 'cansat', 'CANSAT78G1521' => 'cansat', 'CANSAT78G1670' => 'cansat', 'CARHR003600' => 'chi', 'CARHR003610' => 'chi', 'CARHR006290' => 'chi', 'CARHR006430' => 'chi', 'CARHR124110' => 'chi', 'CARHR203870' => 'chi', 'CARHR203880' => 'chi', 'CARHR203890' => 'chi', 'CARHR276880' => 'chi', 'Carub.0001s0346' => 'cru', 'Carub.0001s0347' => 'cru', 'Carub.0001s0607' => 'cru', 'Carub.0003s2768' => 'cru', 'Carub.0003s2769' => 'cru', 'Carub.0004s1178' => 'cru', 'Carub.0006s0806' => 'cru', 'Carub.0006s0807' => 'cru', 'Carub.0006s0808' => 'cru', 'Carub.0008s0501' => 'cru', 'Carub.0008s2379' => 'cru', 'Ca_08655_v3' => 'car', 'Ca_08922_v3' => 'car', 'Ca_08923_v3' => 'car', 'Ca_09119_v3' => 'car', 'Ca_09703_v3' => 'car', 'Ca_09705_v3' => 'car', 'Ca_09835_v3' => 'car', 'Ca_26403_v3' => 'car', 'Ca_30719_v3' => 'car', 'CBR_g17958' => 'cbr', 'CBR_g40516' => 'cbr', 'Cc00_g05350' => 'ccan', 'Cc01_g18690' => 'ccan', 'Cc03_g04830' => 'ccan', 'Cc03_g04850' => 'ccan', 'CDE02G4469' => 'cde', 'CDE06G0883' => 'cde', 'CDE06G1295' => 'cde', 'CDE06G1390' => 'cde', 'CDE07G0584' => 'cde', 'CDE07G1084' => 'cde', 'CDE08G1259' => 'cde', 'Cfa002341' => 'cfa', 'Cfa024337' => 'cfa', 'Ciclev10004749m.g' => 'ccl', 'Ciclev10006127m.g' => 'ccl', 'Ciclev10019720m.g' => 'ccl', 'Ciclev10022652m.g' => 'ccl', 'CiPaw.01G190400' => 'cil', 'CiPaw.01G190500' => 'cil', 'CiPaw.02G116400' => 'cil', 'CiPaw.02G116500' => 'cil', 'CiPaw.04G183000' => 'cil', 'CiPaw.04G183300' => 'cil', 'ClCG05G004610' => 'cla', 'ClCG05G004620' => 'cla', 'ClCG06G006730' => 'cla', 'ClCG06G006740' => 'cla', 'ClCG11G003690' => 'cla', 'COL.COLO4_08276' => 'col', 'COL.COLO4_08277' => 'col', 'COL.COLO4_15787' => 'col', 'COL.COLO4_15789' => 'col', 'Cpa.g.c44815' => 'cpa', 'Cpa.g.sc52.144' => 'cpa', 'Cpa.g.sc58.46' => 'cpa', 'Cpa.g.sc58.47' => 'cpa', 'Cre08.g360900' => 'cre', 'CsaV3_2G013030' => 'csa', 'CsaV3_2G013050' => 'csa', 'CsaV3_2G015620' => 'csa', 'CsaV3_3G012590' => 'csa', 'CsaV3_3G012600' => 'csa', 'CSS0001641' => 'camsi', 'CSS0008310' => 'camsi', 'CSS0013011' => 'camsi', 'CSS0017147' => 'camsi', 'CSS0022970' => 'camsi', 'CSS0025655' => 'camsi', 'CSS0028665' => 'camsi', 'CSS0029117' => 'camsi', 'CSS0032024' => 'camsi', 'CSS0039681' => 'camsi', 'CSS0046516' => 'camsi', 'CSS0050307' => 'camsi', 'DCAR_005871' => 'dca', 'DCAR_007342' => 'dca', 'DCAR_024228' => 'dca', 'DCAR_027277' => 'dca', 'DCAR_030718' => 'dca', 'Dinv20287' => 'din', 'Dinv22461' => 'din', 'Dinv22464' => 'din', 'Dinv29912' => 'din', 'Dinv29913' => 'din', 'Dinv34580' => 'din', 'Dinv34582' => 'din', 'Dinv44632' => 'din', 'Duzib052G0266' => 'dzi', 'Duzib133G0907' => 'dzi', 'Duzib133G1034' => 'dzi', 'Duzib138G0207' => 'dzi', 'Duzib138G0491' => 'dzi', 'Duzib151G0812' => 'dzi', 'Duzib151G1166' => 'dzi', 'Duzib168G0192' => 'dzi', 'Duzib211G0077' => 'dzi', 'Duzib212G0429' => 'dzi', 'Duzib212G0472' => 'dzi', 'ECA233G2617' => 'eca', 'ECA236G4188' => 'eca', 'ECA240G0936' => 'eca', 'ECA240G1129' => 'eca', 'ECA247G0623' => 'eca', 'EL10Ac5g10451' => 'bvu', 'EL10Ac5g10453' => 'bvu', 'EL10Ac5g10894' => 'bvu', 'Eucgr.H00192' => 'egr', 'Eucgr.H00193' => 'egr', 'Eucgr.H00194' => 'egr', 'Eucgr.J01562' => 'egr', 'Eucgr.K03301' => 'egr', 'FAN02G0632' => 'fan', 'FAN05G5378' => 'fan', 'FAN09G3247' => 'fan', 'FAN12G0435' => 'fan', 'FAN12G2426' => 'fan', 'FAN14G1707' => 'fan', 'FAN14G4725' => 'fan', 'FAN15G2071' => 'fan', 'FAN17G3065' => 'fan', 'FAN19G1376' => 'fan', 'FAN20G0354' => 'fan', 'FAN20G2429' => 'fan', 'FAN20G2658' => 'fan', 'FAN24G2343' => 'fan', 'FAN27G2362' => 'fan', 'FAN28G1765' => 'fan', 'FvH4_1g16020' => 'fve', 'FvH4_2g04890' => 'fve', 'FvH4_2g22270' => 'fve', 'FvH4_4g02630' => 'fve', 'FvH4_4g02640' => 'fve', 'FvH4_6g02650' => 'fve', 'Glyma.02G140600' => 'gma', 'Glyma.03G159900' => 'gma', 'Glyma.05G234800' => 'gma', 'Glyma.07G269600' => 'gma', 'Glyma.08G042300' => 'gma', 'Glyma.10G033500' => 'gma', 'Glyma.10G185200' => 'gma', 'Glyma.17G004300' => 'gma', 'Glyma.19G161900' => 'gma', 'Glyma.20G205100' => 'gma', 'Glyma.20G205200' => 'gma', 'Gohir.A01G139101' => 'ghi', 'Gohir.A02G035600' => 'ghi', 'Gohir.A02G117901' => 'ghi', 'Gohir.A07G210100' => 'ghi', 'Gohir.A07G210200' => 'ghi', 'Gohir.A08G061100' => 'ghi', 'Gohir.A09G223000' => 'ghi', 'Gohir.A09G223100' => 'ghi', 'Gohir.A10G113900' => 'ghi', 'Gohir.A10G114000' => 'ghi', 'Gohir.D02G042300' => 'ghi', 'Gohir.D07G216100' => 'ghi', 'Gohir.D07G216200' => 'ghi', 'Gohir.D08G070400' => 'ghi', 'Gohir.D09G225000' => 'ghi', 'Gohir.D09G225100' => 'ghi', 'Gohir.D10G152300' => 'ghi', 'Gohir.D10G153200' => 'ghi', 'Gohir.D11G133701' => 'ghi', 'Gorai.004G074100' => 'gra', 'Gorai.005G046800' => 'gra', 'Gorai.006G246500' => 'gra', 'Gorai.006G246600' => 'gra', 'Gorai.007G142900' => 'gra', 'Gorai.011G171000' => 'gra', 'Gorai.011G171100' => 'gra', 'Gorai.013G104300' => 'gra', 'Gorai.013G104400' => 'gra', 'GSVIVG01000754001' => 'vvi', 'GSVIVG01000756001' => 'vvi', 'GSVIVG01010903001' => 'vvi', 'GSVIVG01017623001' => 'vvi', 'GSVIVG01018113001' => 'vvi', 'GSVIVG01018116001' => 'vvi', 'GSVIVG01018118001' => 'vvi', 'HanXRQChr03g0076211' => 'han', 'HanXRQChr03g0092431' => 'han', 'HanXRQChr03g0092441' => 'han', 'HanXRQChr03g0092591' => 'han', 'HanXRQChr03g0092671' => 'han', 'HanXRQChr03g0092681' => 'han', 'HanXRQChr03g0092691' => 'han', 'HanXRQChr03g0092701' => 'han', 'HanXRQChr03g0092721' => 'han', 'HanXRQChr03g0092731' => 'han', 'HanXRQChr04g0113681' => 'han', 'HanXRQChr10g0281371' => 'han', 'HanXRQChr11g0337141' => 'han', 'HanXRQChr13g0424521' => 'han', 'HanXRQChr13g0424531' => 'han', 'HanXRQChr13g0424541' => 'han', 'HanXRQChr16g0498221' => 'han', 'Haze_04377' => 'cav', 'Haze_11298' => 'cav', 'Haze_24547' => 'cav', 'Haze_24550' => 'cav', 'Haze_26587' => 'cav', 'Hma1.2p1_0650F.1_g195410' => 'hma', 'Hma1.2p1_0893F.1_g233470' => 'hma', 'HPP92_006508' => 'vpl', 'HPP92_024780' => 'vpl', 'Hund02688' => 'sun', 'Hund09380' => 'sun', 'Hund09381' => 'sun', 'Hund09832' => 'sun', 'Hund09833' => 'sun', 'Hund11351' => 'sun', 'Hund11513' => 'sun', 'Lalb_Chr06g0162591' => 'lal', 'Lalb_Chr06g0162601' => 'lal', 'Lalb_Chr06g0169321' => 'lal', 'Lalb_Chr09g0330951' => 'lal', 'Lalb_Chr16g0387631' => 'lal', 'Lalb_Chr21g0306241' => 'lal', 'Lalb_Chr25g0290051' => 'lal', 'Lalb_Chr25g0290061' => 'lal', 'Lalb_Chr25g0290071' => 'lal', 'Lj1g0003876' => 'lja', 'Lj1P1207T36' => 'lonja', 'Lj2C1156G12' => 'lonja', 'Lj3A793G39' => 'lonja', 'Lj3C580G2' => 'lonja', 'Lj3C780G2' => 'lonja', 'Lj3C780T4' => 'lonja', 'Lj3C793G9' => 'lonja', 'Lj4g0012960' => 'lja', 'Lj5g0021252' => 'lja', 'Lj5g0021484' => 'lja', 'Lj5g0024528' => 'lja', 'Lj6A399T12' => 'lonja', 'Lj6A656G65' => 'lonja', 'Lsat_1_v5_gn_3_125500' => 'lsa', 'Lsat_1_v5_gn_3_125540' => 'lsa', 'Lsat_1_v5_gn_5_72701' => 'lsa', 'Lsat_1_v5_gn_8_91560' => 'lsa', 'Lsat_1_v5_gn_9_9640' => 'lsa', 'Manes.01G200600' => 'mes', 'Manes.01G200700' => 'mes', 'Manes.03G168900' => 'mes', 'Manes.03G169000' => 'mes', 'Manes.05G085801' => 'mes', 'Manes.05G086200' => 'mes', 'Manes.15G036700' => 'mes', 'Manes.15G036900' => 'mes', 'Mapoly0004s0172' => 'mpo', 'Mapoly0023s0001' => 'mpo', 'Mapoly0142s0012' => 'mpo', 'MBI01_g32854_MAGBIO' => 'mbi', 'MBI11_g24427_MAGBIO' => 'mbi', 'MBI11_g47319_MAGBIO' => 'mbi', 'MCO01G433' => 'mco', 'MD00G1187800' => 'mdo', 'MD04G1226500' => 'mdo', 'MD05G1203900' => 'mdo', 'MD10G1191100' => 'mdo', 'MD12G1243500' => 'mdo', 'MD13G1207000' => 'mdo', 'MD13G1207100' => 'mdo', 'MD16G1208600' => 'mdo', 'Medtr1g050352' => 'mtr', 'Medtr1g070385' => 'mtr', 'Medtr1g070450' => 'mtr', 'Medtr1g075200' => 'mtr', 'Medtr1g075250' => 'mtr', 'Medtr1g075260' => 'mtr', 'Medtr1g475250' => 'mtr', 'Medtr4g075450' => 'mtr', 'Medtr7g096300' => 'mtr', 'Medtr8g105110' => 'mtr', 'MELO3C006470.2' => 'cme', 'MELO3C006471.2' => 'cme', 'MELO3C020772.2' => 'cme', 'MELO3C026780.2' => 'cme', 'MELO3C026781.2' => 'cme', 'Migut.D00390' => 'egut', 'Migut.G00435' => 'egut', 'Migut.G00436' => 'egut', 'Migut.G00718' => 'egut', 'MSTRG.21891' => 'ama', 'MSTRG.26910' => 'ama', 'MSTRG.4099' => 'ama', 'MSTRG.9925' => 'ama', 'Nitab4.5_0000165g0010' => 'nta', 'Nitab4.5_0000209g0180' => 'nta', 'Nitab4.5_0000244g0440' => 'nta', 'Nitab4.5_0000525g0220' => 'nta', 'Nitab4.5_0001597g0020' => 'nta', 'Nitab4.5_0001878g0040' => 'nta', 'Nitab4.5_0001878g0060' => 'nta', 'Nitab4.5_0002838g0100' => 'nta', 'Nitab4.5_0002838g0120' => 'nta', 'Nitab4.5_0004798g0030' => 'nta', 'Nitab4.5_0005420g0010' => 'nta', 'Nitab4.5_0005507g0010' => 'nta', 'Nitab4.5_0005574g0020' => 'nta', 'Nitab4.5_0005838g0010' => 'nta', 'Nitab4.5_0010580g0020' => 'nta', 'Nn1g02599' => 'nnu', 'Nn1g02608' => 'nnu', 'Nn3g17742' => 'nnu', 'Nn3g19534' => 'nnu', 'Nn3g19535' => 'nnu', 'Oeu008790.1' => 'oeu', 'Oeu008792.1' => 'oeu', 'Oeu032590.1' => 'oeu', 'Oeu035349.1' => 'oeu', 'Oeu049791.1' => 'oeu', 'Os01g0774500' => 'osa', 'Os03g0628800' => 'osa', 'Os03g0798600' => 'osa', 'Os05g0508800' => 'osa', 'Peaxi162Scf00036g02018' => 'pax', 'Peaxi162Scf00578g00032' => 'pax', 'Peaxi162Scf00578g00317' => 'pax', 'Peaxi162Scf00785g00114' => 'pax', 'Peaxi162Scf00813g00119' => 'pax', 'Peaxi162Scf00906g00227' => 'pax', 'PGR004G0875' => 'pgr', 'PGR004G2424' => 'pgr', 'PGR031G1239' => 'pgr', 'PGR031G2474' => 'pgr', 'PGR044G0423' => 'pgr', 'PGSC0003DMG400001128' => 'stu', 'PGSC0003DMG400007336' => 'stu', 'PGSC0003DMG400016318' => 'stu', 'PGSC0003DMG400016319' => 'stu', 'PGSC0003DMG400018074' => 'stu', 'Phvul.001G157700' => 'pvu', 'Phvul.002G148550' => 'pvu', 'Phvul.002G320200' => 'pvu', 'Phvul.003G089200' => 'pvu', 'Phvul.007G126000' => 'pvu', 'Phvul.007G126100' => 'pvu', 'Phvul.007G178000' => 'pvu', 'Phvul.007G178200' => 'pvu', 'Potri.002G043000' => 'ptr', 'Potri.002G043200' => 'ptr', 'Potri.003G123750' => 'ptr', 'Potri.005G055401' => 'ptr', 'Potri.005G219700' => 'ptr', 'Potri.005G220000' => 'ptr', 'Potri.008G161901' => 'ptr', 'Potri.008G162000' => 'ptr', 'Potri.008G162400' => 'ptr', 'Potri.010G076900' => 'ptr', 'Pp3c12_9180' => 'ppa', 'Pp3c13_19770' => 'ppa', 'Pp3c14_22950' => 'ppa', 'Pp3c16_12160' => 'ppa', 'Pp3c27_7820' => 'ppa', 'Pp3c2_3490' => 'ppa', 'Pp3c3_23700' => 'ppa', 'Pp3c3_36520' => 'ppa', 'Pp3c4_15250' => 'ppa', 'PRCOL_00007002' => 'pco', 'Prupe.1G030600' => 'ppe', 'Prupe.1G030700' => 'ppe', 'Prupe.6G345200' => 'ppe', 'Prupe.8G230300' => 'ppe', 'Prupe.8G230500' => 'ppe', 'Psat3g059600' => 'psa', 'Psat5g200920' => 'psa', 'Psat6g056440' => 'psa', 'Psat6g057360' => 'psa', 'Psat6g134120' => 'psa', 'Psat6g134160' => 'psa', 'Psat7g008640' => 'psa', 'Psat7g185240' => 'psa', 'PSO017G1330' => 'pso', 'PSO063G6097' => 'pso', 'PSO170G0835' => 'pso', 'PSO170G2499' => 'pso', 'PSO210G5058' => 'pso', 'PSO210G6154' => 'pso', 'PSO585G0031' => 'pso', 'PSO832G0264' => 'pso', 'PSO832G4288' => 'pso', 'QL03p027355' => 'qlo', 'QL03p027430' => 'qlo', 'QL04p081380' => 'qlo', 'QL06p015642' => 'qlo', 'QL06p015650' => 'qlo', 'QL06p015686' => 'qlo', 'QL12p042927' => 'qlo', 'QL93p1863_0035' => 'qlo', 'RcHm_v2.0_Chr3g0450581' => 'rch', 'RcHm_v2.0_Chr4g0390371' => 'rch', 'RcHm_v2.0_Chr4g0390381' => 'rch', 'RcHm_v2.0_Chr4g0390491' => 'rch', 'RcHm_v2.0_Chr4g0390501' => 'rch', 'RcHm_v2.0_Chr6g0289231' => 'rch', 'Rhsim04G0190400' => 'rsi', 'Rhsim04G0190500' => 'rsi', 'Rhsim04G0190600' => 'rsi', 'Rhsim13G0031400' => 'rsi', 'Rhsim13G0165600' => 'rsi', 'RhsimUnG0114600' => 'rsi', 'RhsimUnG0114700' => 'rsi', 'Sabra02G0034800' => 'sbr', 'Sabra02G0035100' => 'sbr', 'Sabra05G0168600' => 'sbr', 'Sabra05G0168800' => 'sbr', 'Sabra08G0123700' => 'sbr', 'Sabra10G0031900' => 'sbr', 'Sabra13G0039000' => 'sbr', 'SalBow2G0782' => 'sbo', 'SalBow2G1403' => 'sbo', 'SalBow4G0074' => 'sbo', 'SalBow4G2635' => 'sbo', 'SalBow5G3010' => 'sbo', 'Sc05g0000870' => 'sci', 'Sc05g0000890' => 'sci', 'Sc13g0005000' => 'sci', 'Sc13g0005030' => 'sci', 'Sc19g0003790' => 'sci', 'Sc19g0003800' => 'sci', 'Sed0003467' => 'sed', 'Sed0009355' => 'sed', 'Sed0009894' => 'sed', 'Sed0011972' => 'sed', 'Sed0021483' => 'sed', 'Sed0021750' => 'sed', 'Sed0026279' => 'sed', 'SEGI_05312' => 'sgi', 'SEGI_10112' => 'sgi', 'SEGI_15835' => 'sgi', 'SEGI_30386' => 'sgi', 'SEGI_34122' => 'sgi', 'SEGI_35063' => 'sgi', 'SGA_v2.0_scaffold101G29794' => 'sas', 'SGA_v2.0_scaffold1G00573' => 'sas', 'SGA_v2.0_scaffold79G25637' => 'sas', 'SGA_v2.0_scaffold88G27283' => 'sas', 'SGA_v2.0_scaffold88G27285' => 'sas', 'SGA_v2.0_scaffold88G27331' => 'sas', 'SHI09937' => 'shi', 'SMO119G0302' => 'smo', 'SMO137G0231' => 'smo', 'SMO367G1151' => 'smo', 'Solyc02g082000.3' => 'sly', 'Solyc06g031670.3' => 'sly', 'Solyc06g053810.3' => 'sly', 'Solyc07g025457.1' => 'sly', 'Solyc08g059740.1' => 'sly', 'Solyc08g059750.3' => 'sly', 'Solyc09g083370.3' => 'sly', 'Solyc12g038950.3' => 'sly', 'Sopen02g026630' => 'spe', 'Sopen06g018930' => 'spe', 'Sopen06g018940' => 'spe', 'Sopen08g009460' => 'spe', 'Sopen09g032290' => 'spe', 'Sp1g03080' => 'spa', 'Sp1g03090' => 'spa', 'Sp1g05480' => 'spa', 'Sp2g07860' => 'spa', 'Sp2g08430' => 'spa', 'Sp2g08440' => 'spa', 'Sp2g26200' => 'spa', 'Sp4g13170' => 'spa', 'Sp6g33840' => 'spa', 'SpUn1204_0010' => 'spa', 'TAR365G0908' => 'tar', 'TAR381G1270' => 'tar', 'TAR381G1651' => 'tar', 'TAR625G1131' => 'tar', 'TAR633G0962' => 'tar', 'TAR633G1729' => 'tar', 'TAR633G1864' => 'tar', 'TAR636G0221' => 'tar', 'TAR636G0314' => 'tar', 'TAR636G3202' => 'tar', 'THA.LOC104800805' => 'tha', 'THA.LOC104801096' => 'tha', 'THA.LOC104801555' => 'tha', 'THA.LOC104808491' => 'tha', 'THA.LOC104808595' => 'tha', 'THA.LOC104815985' => 'tha', 'THA.LOC104822250' => 'tha', 'THA.LOC104826071' => 'tha', 'Thecc.01G265200' => 'tca', 'Thecc.01G265300' => 'tca', 'Thecc.01G265700' => 'tca', 'Thecc.03G109100' => 'tca', 'Thecc.04G245900' => 'tca', 'Thecc.04G246000' => 'tca', 'Thhalv10003334m.g' => 'esa', 'Thhalv10005508m.g' => 'esa', 'Thhalv10005643m.g' => 'esa', 'Thhalv10007316m.g' => 'esa', 'Thhalv10009006m.g' => 'esa', 'Thhalv10009309m.g' => 'esa', 'Thhalv10014917m.g' => 'esa', 'Thhalv10014919m.g' => 'esa', 'Thhalv10015393m.g' => 'esa', 'Thhalv10016515m.g' => 'esa', 'Thhalv10029242m.g' => 'esa', 'TPR.G16654' => 'tpr', 'TPR.G20589' => 'tpr', 'TPR.G23029' => 'tpr', 'TPR.G27731' => 'tpr', 'TPR.G28889' => 'tpr', 'TPR.G28899' => 'tpr', 'TPR.G30846' => 'tpr', 'TPR.G5452' => 'tpr', 'TPR.G5713' => 'tpr', 'TPR.G9046' => 'tpr', 'TPR.G9061' => 'tpr', 'TWI09G1075' => 'twi', 'TWI12G0806' => 'twi', 'TWI18G0108' => 'twi', 'TWI53G1361' => 'twi', 'TWI73G0185' => 'twi', 'TWI73G0427' => 'twi', 'unitig_37.g12001' => 'ugi', 'unitig_747.g21660' => 'ugi', 'unitig_748.g7232' => 'ugi', 'unitig_748.g7315' => 'ugi', 'unitig_85.g27262' => 'ugi', 'unitig_92.g28220' => 'ugi', 'vmacro02632' => 'vma', 'vmacro08410' => 'vma', 'vmacro08411' => 'vma', 'vmacro15407' => 'vma', 'VMungo0251G3619' => 'vmu', 'VMungo0720G1204' => 'vmu', 'VMungo0720G1918' => 'vmu', 'VMungo0720G2387' => 'vmu', 'VMungo0720G2961' => 'vmu', 'VMungo1215G2154' => 'vmu', 'VMungo1383G2411' => 'vmu', 'Zm00001eb051130' => 'zma', 'Zm00001eb116830' => 'zma', 'Zm00001eb116850' => 'zma', 'Zm00001eb151740' => 'zma', 'Zm00001eb292360' => 'zma', 'Zm00001eb301640' => 'zma' ) $gf_id = 'HOM05D000856' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000856' ) $data_identifier = 'HOM05D000856' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 13, 'ath' => (int) 10, 'atr' => (int) 1, 'acertr' => (int) 8, 'cqu' => (int) 6, 'bca' => (int) 21, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 11, 'car' => (int) 9, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 8, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 5, 'fan' => (int) 16, 'fve' => (int) 6, 'gma' => (int) 11, 'ghi' => (int) 19, 'gra' => (int) 9, 'vvi' => (int) 7, 'han' => (int) 17, 'cav' => (int) 5, 'hma' => (int) 2, 'vpl' => (int) 2, 'sun' => (int) 7, 'lal' => (int) 9, 'lja' => (int) 5, 'lonja' => (int) 9, 'lsa' => (int) 5, 'mes' => (int) 8, 'mpo' => (int) 3, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 10, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 15, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 9, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 9, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 6, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 5, 'spa' => (int) 10, 'tar' => (int) 10, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 11, 'tpr' => (int) 11, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 4, 'vmu' => (int) 7, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb301640' $species_info = array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ) $local_species = 'rsi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000856', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p00010' => 'bna', 'A03p04160' => 'bna', 'A03p17160' => 'bna', 'A04p23370' => 'bna', 'A05p14860' => 'bna', 'A08p37020' => 'bna', 'A09p08050' => 'bna', 'A09p66800' => 'bna', 'A09p67940' => 'bna', 'A10p02680' => 'bna', 'A10p05320' => 'bna', 'Aa31LG1G20560' => 'aar', 'Aa31LG1G20610' => 'aar', 'Aa31LG1G7810' => 'aar', 'Aa31LG5G3590' => 'aar', 'Aa31LG5G6140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3819' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4683' => 'aag', 'Actinidia04480' => 'ach', 'Actinidia05466' => 'ach', 'Actinidia08445' => 'ach', 'Actinidia21170' => 'ach', 'Actinidia24812' => 'ach', 'Actinidia24951' => 'ach', 'Actinidia40088' => 'ach', 'Ah.02g111660' => 'amhyb', 'Ah.11g048900' => 'amhyb', 'Ah.11g049910' => 'amhyb', 'AL1G13870' => 'aly', 'AL1G13880' => 'aly', 'AL1G16760' => 'aly', 'AL390U10020' => 'aly', 'AL4G25520' => 'aly', 'AL6G19890' => 'aly', 'AL6G19900' => 'aly', 'AL6G19910' => 'aly', 'AL8G40100' => 'aly', 'Aqoxy2G03562' => 'aox', 'Aqoxy5G00316' => 'aox', 'Aqoxy5G00926' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1628KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1H403S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2FU6SJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.882I6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8YRY2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YN1SN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AF70II' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZA8L1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F916KL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHRD8H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KTZ8QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S22EMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8M29T' => 'arhy', 'AT1G04270' => 'ath', 'AT1G04280' => 'ath', 'AT1G06750' => 'ath', 'AT1G33850' => 'ath', 'AT2G30630' => 'ath', 'AT5G09490' => 'ath', 'AT5G09500' => 'ath', 'AT5G09510' => 'ath', 'AT5G43640' => 'ath', 'AT5G63070' => 'ath', 'ATR0605G315' => 'atr', 'Atru.chr11.175' => 'acertr', 'Atru.chr11.653' => 'acertr', 'Atru.chr3.1616' => 'acertr', 'Atru.chr4.2230' => 'acertr', 'Atru.chr4.2232' => 'acertr', 'Atru.chr5.1598' => 'acertr', 'Atru.chr5.1600' => 'acertr', 'Atru.chr5.2188' => 'acertr', 'AUR62008326' => 'cqu', 'AUR62011922' => 'cqu', 'AUR62011924' => 'cqu', 'AUR62021771' => 'cqu', 'AUR62032237' => 'cqu', 'AUR62032240' => 'cqu', 'BcaB01g05572' => 'bca', 'BcaB02g10337' => 'bca', 'BcaB04g19944' => 'bca', 'BcaB05g21548' => 'bca', 'BcaB05g21549' => 'bca', 'BcaB05g23227' => 'bca', 'BcaB06g26256' => 'bca', 'BcaB06g26257' => 'bca', 'BcaB06g28379' => 'bca', 'BcaC02g11159' => 'bca', 'BcaC03g13258' => 'bca', 'BcaC03g13259' => 'bca', 'BcaC05g24456' => 'bca', 'BcaC05g24457' => 'bca', 'BcaC07g36922' => 'bca', 'BcaC07g36923' => 'bca', 'BcaC07g42050' => 'bca', 'BcaC07g42176' => 'bca', 'BcaC07g42195' => 'bca', 'BcaC07g42196' => 'bca', 'BcaNung06674' => 'bca', 'BolC2t06351H' => 'bol', 'BolC2t06352H' => 'bol', 'BolC3t12993H' => 'bol', 'BolC4t23525H' => 'bol', 'BolC4t27475H' => 'bol', 'BolC5t29025H' => 'bol', 'BolC5t29026H' => 'bol', 'BolC8t46898H' => 'bol', 'BolC8t46899H' => 'bol', 'BolC8t52630H' => 'bol', 'BolC8t52765H' => 'bol', 'BolC9t53824H' => 'bol', 'BraA03t09760Z' => 'bra', 'BraA03t10990Z' => 'bra', 'BraA05t20413Z' => 'bra', 'BraA08t35602Z' => 'bra', 'BraA09t36458Z' => 'bra', 'BraA09t42018Z' => 'bra', 'BraA09t42129Z' => 'bra', 'BraA10t42536Z' => 'bra', 'BraA10t42537Z' => 'bra', 'C01p10690' => 'bna', 'C02p03890' => 'bna', 'C02p03900' => 'bna', 'C03p04620' => 'bna', 'C04p19870' => 'bna', 'C04p59670' => 'bna', 'C05p02460' => 'bna', 'C05p02470' => 'bna', 'C08p00980' => 'bna', 'C08p00990' => 'bna', 'C08p51030' => 'bna', 'C08p52360' => 'bna', 'C09p09120' => 'bna', 'CAN.G19.15' => 'can', 'CAN.G251.10' => 'can', 'CAN.G251.9' => 'can', 'CAN.G398.24' => 'can', 'CAN.G410.32' => 'can', 'CAN.G881.2' => 'can', 'CANSAT01G3025' => 'cansat', 'CANSAT78G1211' => 'cansat', 'CANSAT78G1218' => 'cansat', 'CANSAT78G1521' => 'cansat', 'CANSAT78G1670' => 'cansat', 'CARHR003600' => 'chi', 'CARHR003610' => 'chi', 'CARHR006290' => 'chi', 'CARHR006430' => 'chi', 'CARHR124110' => 'chi', 'CARHR203870' => 'chi', 'CARHR203880' => 'chi', 'CARHR203890' => 'chi', 'CARHR276880' => 'chi', 'Carub.0001s0346' => 'cru', 'Carub.0001s0347' => 'cru', 'Carub.0001s0607' => 'cru', 'Carub.0003s2768' => 'cru', 'Carub.0003s2769' => 'cru', 'Carub.0004s1178' => 'cru', 'Carub.0006s0806' => 'cru', 'Carub.0006s0807' => 'cru', 'Carub.0006s0808' => 'cru', 'Carub.0008s0501' => 'cru', 'Carub.0008s2379' => 'cru', 'Ca_08655_v3' => 'car', 'Ca_08922_v3' => 'car', 'Ca_08923_v3' => 'car', 'Ca_09119_v3' => 'car', 'Ca_09703_v3' => 'car', 'Ca_09705_v3' => 'car', 'Ca_09835_v3' => 'car', 'Ca_26403_v3' => 'car', 'Ca_30719_v3' => 'car', 'CBR_g17958' => 'cbr', 'CBR_g40516' => 'cbr', 'Cc00_g05350' => 'ccan', 'Cc01_g18690' => 'ccan', 'Cc03_g04830' => 'ccan', 'Cc03_g04850' => 'ccan', 'CDE02G4469' => 'cde', 'CDE06G0883' => 'cde', 'CDE06G1295' => 'cde', 'CDE06G1390' => 'cde', 'CDE07G0584' => 'cde', 'CDE07G1084' => 'cde', 'CDE08G1259' => 'cde', 'Cfa002341' => 'cfa', 'Cfa024337' => 'cfa', 'Ciclev10004749m.g' => 'ccl', 'Ciclev10006127m.g' => 'ccl', 'Ciclev10019720m.g' => 'ccl', 'Ciclev10022652m.g' => 'ccl', 'CiPaw.01G190400' => 'cil', 'CiPaw.01G190500' => 'cil', 'CiPaw.02G116400' => 'cil', 'CiPaw.02G116500' => 'cil', 'CiPaw.04G183000' => 'cil', 'CiPaw.04G183300' => 'cil', 'ClCG05G004610' => 'cla', 'ClCG05G004620' => 'cla', 'ClCG06G006730' => 'cla', 'ClCG06G006740' => 'cla', 'ClCG11G003690' => 'cla', 'COL.COLO4_08276' => 'col', 'COL.COLO4_08277' => 'col', 'COL.COLO4_15787' => 'col', 'COL.COLO4_15789' => 'col', 'Cpa.g.c44815' => 'cpa', 'Cpa.g.sc52.144' => 'cpa', 'Cpa.g.sc58.46' => 'cpa', 'Cpa.g.sc58.47' => 'cpa', 'Cre08.g360900' => 'cre', 'CsaV3_2G013030' => 'csa', 'CsaV3_2G013050' => 'csa', 'CsaV3_2G015620' => 'csa', 'CsaV3_3G012590' => 'csa', 'CsaV3_3G012600' => 'csa', 'CSS0001641' => 'camsi', 'CSS0008310' => 'camsi', 'CSS0013011' => 'camsi', 'CSS0017147' => 'camsi', 'CSS0022970' => 'camsi', 'CSS0025655' => 'camsi', 'CSS0028665' => 'camsi', 'CSS0029117' => 'camsi', 'CSS0032024' => 'camsi', 'CSS0039681' => 'camsi', 'CSS0046516' => 'camsi', 'CSS0050307' => 'camsi', 'DCAR_005871' => 'dca', 'DCAR_007342' => 'dca', 'DCAR_024228' => 'dca', 'DCAR_027277' => 'dca', 'DCAR_030718' => 'dca', 'Dinv20287' => 'din', 'Dinv22461' => 'din', 'Dinv22464' => 'din', 'Dinv29912' => 'din', 'Dinv29913' => 'din', 'Dinv34580' => 'din', 'Dinv34582' => 'din', 'Dinv44632' => 'din', 'Duzib052G0266' => 'dzi', 'Duzib133G0907' => 'dzi', 'Duzib133G1034' => 'dzi', 'Duzib138G0207' => 'dzi', 'Duzib138G0491' => 'dzi', 'Duzib151G0812' => 'dzi', 'Duzib151G1166' => 'dzi', 'Duzib168G0192' => 'dzi', 'Duzib211G0077' => 'dzi', 'Duzib212G0429' => 'dzi', 'Duzib212G0472' => 'dzi', 'ECA233G2617' => 'eca', 'ECA236G4188' => 'eca', 'ECA240G0936' => 'eca', 'ECA240G1129' => 'eca', 'ECA247G0623' => 'eca', 'EL10Ac5g10451' => 'bvu', 'EL10Ac5g10453' => 'bvu', 'EL10Ac5g10894' => 'bvu', 'Eucgr.H00192' => 'egr', 'Eucgr.H00193' => 'egr', 'Eucgr.H00194' => 'egr', 'Eucgr.J01562' => 'egr', 'Eucgr.K03301' => 'egr', 'FAN02G0632' => 'fan', 'FAN05G5378' => 'fan', 'FAN09G3247' => 'fan', 'FAN12G0435' => 'fan', 'FAN12G2426' => 'fan', 'FAN14G1707' => 'fan', 'FAN14G4725' => 'fan', 'FAN15G2071' => 'fan', 'FAN17G3065' => 'fan', 'FAN19G1376' => 'fan', 'FAN20G0354' => 'fan', 'FAN20G2429' => 'fan', 'FAN20G2658' => 'fan', 'FAN24G2343' => 'fan', 'FAN27G2362' => 'fan', 'FAN28G1765' => 'fan', 'FvH4_1g16020' => 'fve', 'FvH4_2g04890' => 'fve', 'FvH4_2g22270' => 'fve', 'FvH4_4g02630' => 'fve', 'FvH4_4g02640' => 'fve', 'FvH4_6g02650' => 'fve', 'Glyma.02G140600' => 'gma', 'Glyma.03G159900' => 'gma', 'Glyma.05G234800' => 'gma', 'Glyma.07G269600' => 'gma', 'Glyma.08G042300' => 'gma', 'Glyma.10G033500' => 'gma', 'Glyma.10G185200' => 'gma', 'Glyma.17G004300' => 'gma', 'Glyma.19G161900' => 'gma', 'Glyma.20G205100' => 'gma', 'Glyma.20G205200' => 'gma', 'Gohir.A01G139101' => 'ghi', 'Gohir.A02G035600' => 'ghi', 'Gohir.A02G117901' => 'ghi', 'Gohir.A07G210100' => 'ghi', 'Gohir.A07G210200' => 'ghi', 'Gohir.A08G061100' => 'ghi', 'Gohir.A09G223000' => 'ghi', 'Gohir.A09G223100' => 'ghi', 'Gohir.A10G113900' => 'ghi', 'Gohir.A10G114000' => 'ghi', 'Gohir.D02G042300' => 'ghi', 'Gohir.D07G216100' => 'ghi', 'Gohir.D07G216200' => 'ghi', 'Gohir.D08G070400' => 'ghi', 'Gohir.D09G225000' => 'ghi', 'Gohir.D09G225100' => 'ghi', 'Gohir.D10G152300' => 'ghi', 'Gohir.D10G153200' => 'ghi', 'Gohir.D11G133701' => 'ghi', 'Gorai.004G074100' => 'gra', 'Gorai.005G046800' => 'gra', 'Gorai.006G246500' => 'gra', 'Gorai.006G246600' => 'gra', 'Gorai.007G142900' => 'gra', 'Gorai.011G171000' => 'gra', 'Gorai.011G171100' => 'gra', 'Gorai.013G104300' => 'gra', 'Gorai.013G104400' => 'gra', 'GSVIVG01000754001' => 'vvi', 'GSVIVG01000756001' => 'vvi', 'GSVIVG01010903001' => 'vvi', 'GSVIVG01017623001' => 'vvi', 'GSVIVG01018113001' => 'vvi', 'GSVIVG01018116001' => 'vvi', 'GSVIVG01018118001' => 'vvi', 'HanXRQChr03g0076211' => 'han', 'HanXRQChr03g0092431' => 'han', 'HanXRQChr03g0092441' => 'han', 'HanXRQChr03g0092591' => 'han', 'HanXRQChr03g0092671' => 'han', 'HanXRQChr03g0092681' => 'han', 'HanXRQChr03g0092691' => 'han', 'HanXRQChr03g0092701' => 'han', 'HanXRQChr03g0092721' => 'han', 'HanXRQChr03g0092731' => 'han', 'HanXRQChr04g0113681' => 'han', 'HanXRQChr10g0281371' => 'han', 'HanXRQChr11g0337141' => 'han', 'HanXRQChr13g0424521' => 'han', 'HanXRQChr13g0424531' => 'han', 'HanXRQChr13g0424541' => 'han', 'HanXRQChr16g0498221' => 'han', 'Haze_04377' => 'cav', 'Haze_11298' => 'cav', 'Haze_24547' => 'cav', 'Haze_24550' => 'cav', 'Haze_26587' => 'cav', 'Hma1.2p1_0650F.1_g195410' => 'hma', 'Hma1.2p1_0893F.1_g233470' => 'hma', 'HPP92_006508' => 'vpl', 'HPP92_024780' => 'vpl', 'Hund02688' => 'sun', 'Hund09380' => 'sun', 'Hund09381' => 'sun', 'Hund09832' => 'sun', 'Hund09833' => 'sun', 'Hund11351' => 'sun', 'Hund11513' => 'sun', 'Lalb_Chr06g0162591' => 'lal', 'Lalb_Chr06g0162601' => 'lal', 'Lalb_Chr06g0169321' => 'lal', 'Lalb_Chr09g0330951' => 'lal', 'Lalb_Chr16g0387631' => 'lal', 'Lalb_Chr21g0306241' => 'lal', 'Lalb_Chr25g0290051' => 'lal', 'Lalb_Chr25g0290061' => 'lal', 'Lalb_Chr25g0290071' => 'lal', 'Lj1g0003876' => 'lja', 'Lj1P1207T36' => 'lonja', 'Lj2C1156G12' => 'lonja', 'Lj3A793G39' => 'lonja', 'Lj3C580G2' => 'lonja', 'Lj3C780G2' => 'lonja', 'Lj3C780T4' => 'lonja', 'Lj3C793G9' => 'lonja', 'Lj4g0012960' => 'lja', 'Lj5g0021252' => 'lja', 'Lj5g0021484' => 'lja', 'Lj5g0024528' => 'lja', 'Lj6A399T12' => 'lonja', 'Lj6A656G65' => 'lonja', 'Lsat_1_v5_gn_3_125500' => 'lsa', 'Lsat_1_v5_gn_3_125540' => 'lsa', 'Lsat_1_v5_gn_5_72701' => 'lsa', 'Lsat_1_v5_gn_8_91560' => 'lsa', 'Lsat_1_v5_gn_9_9640' => 'lsa', 'Manes.01G200600' => 'mes', 'Manes.01G200700' => 'mes', 'Manes.03G168900' => 'mes', 'Manes.03G169000' => 'mes', 'Manes.05G085801' => 'mes', 'Manes.05G086200' => 'mes', 'Manes.15G036700' => 'mes', 'Manes.15G036900' => 'mes', 'Mapoly0004s0172' => 'mpo', 'Mapoly0023s0001' => 'mpo', 'Mapoly0142s0012' => 'mpo', 'MBI01_g32854_MAGBIO' => 'mbi', 'MBI11_g24427_MAGBIO' => 'mbi', 'MBI11_g47319_MAGBIO' => 'mbi', 'MCO01G433' => 'mco', 'MD00G1187800' => 'mdo', 'MD04G1226500' => 'mdo', 'MD05G1203900' => 'mdo', 'MD10G1191100' => 'mdo', 'MD12G1243500' => 'mdo', 'MD13G1207000' => 'mdo', 'MD13G1207100' => 'mdo', 'MD16G1208600' => 'mdo', 'Medtr1g050352' => 'mtr', 'Medtr1g070385' => 'mtr', 'Medtr1g070450' => 'mtr', 'Medtr1g075200' => 'mtr', 'Medtr1g075250' => 'mtr', 'Medtr1g075260' => 'mtr', 'Medtr1g475250' => 'mtr', 'Medtr4g075450' => 'mtr', 'Medtr7g096300' => 'mtr', 'Medtr8g105110' => 'mtr', 'MELO3C006470.2' => 'cme', 'MELO3C006471.2' => 'cme', 'MELO3C020772.2' => 'cme', 'MELO3C026780.2' => 'cme', 'MELO3C026781.2' => 'cme', 'Migut.D00390' => 'egut', 'Migut.G00435' => 'egut', 'Migut.G00436' => 'egut', 'Migut.G00718' => 'egut', 'MSTRG.21891' => 'ama', 'MSTRG.26910' => 'ama', 'MSTRG.4099' => 'ama', 'MSTRG.9925' => 'ama', 'Nitab4.5_0000165g0010' => 'nta', 'Nitab4.5_0000209g0180' => 'nta', 'Nitab4.5_0000244g0440' => 'nta', 'Nitab4.5_0000525g0220' => 'nta', 'Nitab4.5_0001597g0020' => 'nta', 'Nitab4.5_0001878g0040' => 'nta', 'Nitab4.5_0001878g0060' => 'nta', 'Nitab4.5_0002838g0100' => 'nta', 'Nitab4.5_0002838g0120' => 'nta', 'Nitab4.5_0004798g0030' => 'nta', 'Nitab4.5_0005420g0010' => 'nta', 'Nitab4.5_0005507g0010' => 'nta', 'Nitab4.5_0005574g0020' => 'nta', 'Nitab4.5_0005838g0010' => 'nta', 'Nitab4.5_0010580g0020' => 'nta', 'Nn1g02599' => 'nnu', 'Nn1g02608' => 'nnu', 'Nn3g17742' => 'nnu', 'Nn3g19534' => 'nnu', 'Nn3g19535' => 'nnu', 'Oeu008790.1' => 'oeu', 'Oeu008792.1' => 'oeu', 'Oeu032590.1' => 'oeu', 'Oeu035349.1' => 'oeu', 'Oeu049791.1' => 'oeu', 'Os01g0774500' => 'osa', 'Os03g0628800' => 'osa', 'Os03g0798600' => 'osa', 'Os05g0508800' => 'osa', 'Peaxi162Scf00036g02018' => 'pax', 'Peaxi162Scf00578g00032' => 'pax', 'Peaxi162Scf00578g00317' => 'pax', 'Peaxi162Scf00785g00114' => 'pax', 'Peaxi162Scf00813g00119' => 'pax', 'Peaxi162Scf00906g00227' => 'pax', 'PGR004G0875' => 'pgr', 'PGR004G2424' => 'pgr', 'PGR031G1239' => 'pgr', 'PGR031G2474' => 'pgr', 'PGR044G0423' => 'pgr', 'PGSC0003DMG400001128' => 'stu', 'PGSC0003DMG400007336' => 'stu', 'PGSC0003DMG400016318' => 'stu', 'PGSC0003DMG400016319' => 'stu', 'PGSC0003DMG400018074' => 'stu', 'Phvul.001G157700' => 'pvu', 'Phvul.002G148550' => 'pvu', 'Phvul.002G320200' => 'pvu', 'Phvul.003G089200' => 'pvu', 'Phvul.007G126000' => 'pvu', 'Phvul.007G126100' => 'pvu', 'Phvul.007G178000' => 'pvu', 'Phvul.007G178200' => 'pvu', 'Potri.002G043000' => 'ptr', 'Potri.002G043200' => 'ptr', 'Potri.003G123750' => 'ptr', 'Potri.005G055401' => 'ptr', 'Potri.005G219700' => 'ptr', 'Potri.005G220000' => 'ptr', 'Potri.008G161901' => 'ptr', 'Potri.008G162000' => 'ptr', 'Potri.008G162400' => 'ptr', 'Potri.010G076900' => 'ptr', 'Pp3c12_9180' => 'ppa', 'Pp3c13_19770' => 'ppa', 'Pp3c14_22950' => 'ppa', 'Pp3c16_12160' => 'ppa', 'Pp3c27_7820' => 'ppa', 'Pp3c2_3490' => 'ppa', 'Pp3c3_23700' => 'ppa', 'Pp3c3_36520' => 'ppa', 'Pp3c4_15250' => 'ppa', 'PRCOL_00007002' => 'pco', 'Prupe.1G030600' => 'ppe', 'Prupe.1G030700' => 'ppe', 'Prupe.6G345200' => 'ppe', 'Prupe.8G230300' => 'ppe', 'Prupe.8G230500' => 'ppe', 'Psat3g059600' => 'psa', 'Psat5g200920' => 'psa', 'Psat6g056440' => 'psa', 'Psat6g057360' => 'psa', 'Psat6g134120' => 'psa', 'Psat6g134160' => 'psa', 'Psat7g008640' => 'psa', 'Psat7g185240' => 'psa', 'PSO017G1330' => 'pso', 'PSO063G6097' => 'pso', 'PSO170G0835' => 'pso', 'PSO170G2499' => 'pso', 'PSO210G5058' => 'pso', 'PSO210G6154' => 'pso', 'PSO585G0031' => 'pso', 'PSO832G0264' => 'pso', 'PSO832G4288' => 'pso', 'QL03p027355' => 'qlo', 'QL03p027430' => 'qlo', 'QL04p081380' => 'qlo', 'QL06p015642' => 'qlo', 'QL06p015650' => 'qlo', 'QL06p015686' => 'qlo', 'QL12p042927' => 'qlo', 'QL93p1863_0035' => 'qlo', 'RcHm_v2.0_Chr3g0450581' => 'rch', 'RcHm_v2.0_Chr4g0390371' => 'rch', 'RcHm_v2.0_Chr4g0390381' => 'rch', 'RcHm_v2.0_Chr4g0390491' => 'rch', 'RcHm_v2.0_Chr4g0390501' => 'rch', 'RcHm_v2.0_Chr6g0289231' => 'rch', 'Rhsim04G0190400' => 'rsi', 'Rhsim04G0190500' => 'rsi', 'Rhsim04G0190600' => 'rsi', 'Rhsim13G0031400' => 'rsi', 'Rhsim13G0165600' => 'rsi', 'RhsimUnG0114600' => 'rsi', 'RhsimUnG0114700' => 'rsi', 'Sabra02G0034800' => 'sbr', 'Sabra02G0035100' => 'sbr', 'Sabra05G0168600' => 'sbr', 'Sabra05G0168800' => 'sbr', 'Sabra08G0123700' => 'sbr', 'Sabra10G0031900' => 'sbr', 'Sabra13G0039000' => 'sbr', 'SalBow2G0782' => 'sbo', 'SalBow2G1403' => 'sbo', 'SalBow4G0074' => 'sbo', 'SalBow4G2635' => 'sbo', 'SalBow5G3010' => 'sbo', 'Sc05g0000870' => 'sci', 'Sc05g0000890' => 'sci', 'Sc13g0005000' => 'sci', 'Sc13g0005030' => 'sci', 'Sc19g0003790' => 'sci', 'Sc19g0003800' => 'sci', 'Sed0003467' => 'sed', 'Sed0009355' => 'sed', 'Sed0009894' => 'sed', 'Sed0011972' => 'sed', 'Sed0021483' => 'sed', 'Sed0021750' => 'sed', 'Sed0026279' => 'sed', 'SEGI_05312' => 'sgi', 'SEGI_10112' => 'sgi', 'SEGI_15835' => 'sgi', 'SEGI_30386' => 'sgi', 'SEGI_34122' => 'sgi', 'SEGI_35063' => 'sgi', 'SGA_v2.0_scaffold101G29794' => 'sas', 'SGA_v2.0_scaffold1G00573' => 'sas', 'SGA_v2.0_scaffold79G25637' => 'sas', 'SGA_v2.0_scaffold88G27283' => 'sas', 'SGA_v2.0_scaffold88G27285' => 'sas', 'SGA_v2.0_scaffold88G27331' => 'sas', 'SHI09937' => 'shi', 'SMO119G0302' => 'smo', 'SMO137G0231' => 'smo', 'SMO367G1151' => 'smo', 'Solyc02g082000.3' => 'sly', 'Solyc06g031670.3' => 'sly', 'Solyc06g053810.3' => 'sly', 'Solyc07g025457.1' => 'sly', 'Solyc08g059740.1' => 'sly', 'Solyc08g059750.3' => 'sly', 'Solyc09g083370.3' => 'sly', 'Solyc12g038950.3' => 'sly', 'Sopen02g026630' => 'spe', 'Sopen06g018930' => 'spe', 'Sopen06g018940' => 'spe', 'Sopen08g009460' => 'spe', 'Sopen09g032290' => 'spe', 'Sp1g03080' => 'spa', 'Sp1g03090' => 'spa', 'Sp1g05480' => 'spa', 'Sp2g07860' => 'spa', 'Sp2g08430' => 'spa', 'Sp2g08440' => 'spa', 'Sp2g26200' => 'spa', 'Sp4g13170' => 'spa', 'Sp6g33840' => 'spa', 'SpUn1204_0010' => 'spa', 'TAR365G0908' => 'tar', 'TAR381G1270' => 'tar', 'TAR381G1651' => 'tar', 'TAR625G1131' => 'tar', 'TAR633G0962' => 'tar', 'TAR633G1729' => 'tar', 'TAR633G1864' => 'tar', 'TAR636G0221' => 'tar', 'TAR636G0314' => 'tar', 'TAR636G3202' => 'tar', 'THA.LOC104800805' => 'tha', 'THA.LOC104801096' => 'tha', 'THA.LOC104801555' => 'tha', 'THA.LOC104808491' => 'tha', 'THA.LOC104808595' => 'tha', 'THA.LOC104815985' => 'tha', 'THA.LOC104822250' => 'tha', 'THA.LOC104826071' => 'tha', 'Thecc.01G265200' => 'tca', 'Thecc.01G265300' => 'tca', 'Thecc.01G265700' => 'tca', 'Thecc.03G109100' => 'tca', 'Thecc.04G245900' => 'tca', 'Thecc.04G246000' => 'tca', 'Thhalv10003334m.g' => 'esa', 'Thhalv10005508m.g' => 'esa', 'Thhalv10005643m.g' => 'esa', 'Thhalv10007316m.g' => 'esa', 'Thhalv10009006m.g' => 'esa', 'Thhalv10009309m.g' => 'esa', 'Thhalv10014917m.g' => 'esa', 'Thhalv10014919m.g' => 'esa', 'Thhalv10015393m.g' => 'esa', 'Thhalv10016515m.g' => 'esa', 'Thhalv10029242m.g' => 'esa', 'TPR.G16654' => 'tpr', 'TPR.G20589' => 'tpr', 'TPR.G23029' => 'tpr', 'TPR.G27731' => 'tpr', 'TPR.G28889' => 'tpr', 'TPR.G28899' => 'tpr', 'TPR.G30846' => 'tpr', 'TPR.G5452' => 'tpr', 'TPR.G5713' => 'tpr', 'TPR.G9046' => 'tpr', 'TPR.G9061' => 'tpr', 'TWI09G1075' => 'twi', 'TWI12G0806' => 'twi', 'TWI18G0108' => 'twi', 'TWI53G1361' => 'twi', 'TWI73G0185' => 'twi', 'TWI73G0427' => 'twi', 'unitig_37.g12001' => 'ugi', 'unitig_747.g21660' => 'ugi', 'unitig_748.g7232' => 'ugi', 'unitig_748.g7315' => 'ugi', 'unitig_85.g27262' => 'ugi', 'unitig_92.g28220' => 'ugi', 'vmacro02632' => 'vma', 'vmacro08410' => 'vma', 'vmacro08411' => 'vma', 'vmacro15407' => 'vma', 'VMungo0251G3619' => 'vmu', 'VMungo0720G1204' => 'vmu', 'VMungo0720G1918' => 'vmu', 'VMungo0720G2387' => 'vmu', 'VMungo0720G2961' => 'vmu', 'VMungo1215G2154' => 'vmu', 'VMungo1383G2411' => 'vmu', 'Zm00001eb051130' => 'zma', 'Zm00001eb116830' => 'zma', 'Zm00001eb116850' => 'zma', 'Zm00001eb151740' => 'zma', 'Zm00001eb292360' => 'zma', 'Zm00001eb301640' => 'zma' ), 'gf_id' => 'HOM05D000856', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000856' ), 'data_identifier' => 'HOM05D000856', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000856', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p00010' => 'bna', 'A03p04160' => 'bna', 'A03p17160' => 'bna', 'A04p23370' => 'bna', 'A05p14860' => 'bna', 'A08p37020' => 'bna', 'A09p08050' => 'bna', 'A09p66800' => 'bna', 'A09p67940' => 'bna', 'A10p02680' => 'bna', 'A10p05320' => 'bna', 'Aa31LG1G20560' => 'aar', 'Aa31LG1G20610' => 'aar', 'Aa31LG1G7810' => 'aar', 'Aa31LG5G3590' => 'aar', 'Aa31LG5G6140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3819' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4683' => 'aag', 'Actinidia04480' => 'ach', 'Actinidia05466' => 'ach', 'Actinidia08445' => 'ach', 'Actinidia21170' => 'ach', 'Actinidia24812' => 'ach', 'Actinidia24951' => 'ach', 'Actinidia40088' => 'ach', 'Ah.02g111660' => 'amhyb', 'Ah.11g048900' => 'amhyb', 'Ah.11g049910' => 'amhyb', 'AL1G13870' => 'aly', 'AL1G13880' => 'aly', 'AL1G16760' => 'aly', 'AL390U10020' => 'aly', 'AL4G25520' => 'aly', 'AL6G19890' => 'aly', 'AL6G19900' => 'aly', 'AL6G19910' => 'aly', 'AL8G40100' => 'aly', 'Aqoxy2G03562' => 'aox', 'Aqoxy5G00316' => 'aox', 'Aqoxy5G00926' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1628KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1H403S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2FU6SJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.882I6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8YRY2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YN1SN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AF70II' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZA8L1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F916KL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHRD8H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KTZ8QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S22EMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8M29T' => 'arhy', 'AT1G04270' => 'ath', 'AT1G04280' => 'ath', 'AT1G06750' => 'ath', 'AT1G33850' => 'ath', 'AT2G30630' => 'ath', 'AT5G09490' => 'ath', 'AT5G09500' => 'ath', 'AT5G09510' => 'ath', 'AT5G43640' => 'ath', 'AT5G63070' => 'ath', 'ATR0605G315' => 'atr', 'Atru.chr11.175' => 'acertr', 'Atru.chr11.653' => 'acertr', 'Atru.chr3.1616' => 'acertr', 'Atru.chr4.2230' => 'acertr', 'Atru.chr4.2232' => 'acertr', 'Atru.chr5.1598' => 'acertr', 'Atru.chr5.1600' => 'acertr', 'Atru.chr5.2188' => 'acertr', 'AUR62008326' => 'cqu', 'AUR62011922' => 'cqu', 'AUR62011924' => 'cqu', 'AUR62021771' => 'cqu', 'AUR62032237' => 'cqu', 'AUR62032240' => 'cqu', 'BcaB01g05572' => 'bca', 'BcaB02g10337' => 'bca', 'BcaB04g19944' => 'bca', 'BcaB05g21548' => 'bca', 'BcaB05g21549' => 'bca', 'BcaB05g23227' => 'bca', 'BcaB06g26256' => 'bca', 'BcaB06g26257' => 'bca', 'BcaB06g28379' => 'bca', 'BcaC02g11159' => 'bca', 'BcaC03g13258' => 'bca', 'BcaC03g13259' => 'bca', 'BcaC05g24456' => 'bca', 'BcaC05g24457' => 'bca', 'BcaC07g36922' => 'bca', 'BcaC07g36923' => 'bca', 'BcaC07g42050' => 'bca', 'BcaC07g42176' => 'bca', 'BcaC07g42195' => 'bca', 'BcaC07g42196' => 'bca', 'BcaNung06674' => 'bca', 'BolC2t06351H' => 'bol', 'BolC2t06352H' => 'bol', 'BolC3t12993H' => 'bol', 'BolC4t23525H' => 'bol', 'BolC4t27475H' => 'bol', 'BolC5t29025H' => 'bol', 'BolC5t29026H' => 'bol', 'BolC8t46898H' => 'bol', 'BolC8t46899H' => 'bol', 'BolC8t52630H' => 'bol', 'BolC8t52765H' => 'bol', 'BolC9t53824H' => 'bol', 'BraA03t09760Z' => 'bra', 'BraA03t10990Z' => 'bra', 'BraA05t20413Z' => 'bra', 'BraA08t35602Z' => 'bra', 'BraA09t36458Z' => 'bra', 'BraA09t42018Z' => 'bra', 'BraA09t42129Z' => 'bra', 'BraA10t42536Z' => 'bra', 'BraA10t42537Z' => 'bra', 'C01p10690' => 'bna', 'C02p03890' => 'bna', 'C02p03900' => 'bna', 'C03p04620' => 'bna', 'C04p19870' => 'bna', 'C04p59670' => 'bna', 'C05p02460' => 'bna', 'C05p02470' => 'bna', 'C08p00980' => 'bna', 'C08p00990' => 'bna', 'C08p51030' => 'bna', 'C08p52360' => 'bna', 'C09p09120' => 'bna', 'CAN.G19.15' => 'can', 'CAN.G251.10' => 'can', 'CAN.G251.9' => 'can', 'CAN.G398.24' => 'can', 'CAN.G410.32' => 'can', 'CAN.G881.2' => 'can', 'CANSAT01G3025' => 'cansat', 'CANSAT78G1211' => 'cansat', 'CANSAT78G1218' => 'cansat', 'CANSAT78G1521' => 'cansat', 'CANSAT78G1670' => 'cansat', 'CARHR003600' => 'chi', 'CARHR003610' => 'chi', 'CARHR006290' => 'chi', 'CARHR006430' => 'chi', 'CARHR124110' => 'chi', 'CARHR203870' => 'chi', 'CARHR203880' => 'chi', 'CARHR203890' => 'chi', 'CARHR276880' => 'chi', 'Carub.0001s0346' => 'cru', 'Carub.0001s0347' => 'cru', 'Carub.0001s0607' => 'cru', 'Carub.0003s2768' => 'cru', 'Carub.0003s2769' => 'cru', 'Carub.0004s1178' => 'cru', 'Carub.0006s0806' => 'cru', 'Carub.0006s0807' => 'cru', 'Carub.0006s0808' => 'cru', 'Carub.0008s0501' => 'cru', 'Carub.0008s2379' => 'cru', 'Ca_08655_v3' => 'car', 'Ca_08922_v3' => 'car', 'Ca_08923_v3' => 'car', 'Ca_09119_v3' => 'car', 'Ca_09703_v3' => 'car', 'Ca_09705_v3' => 'car', 'Ca_09835_v3' => 'car', 'Ca_26403_v3' => 'car', 'Ca_30719_v3' => 'car', 'CBR_g17958' => 'cbr', 'CBR_g40516' => 'cbr', 'Cc00_g05350' => 'ccan', 'Cc01_g18690' => 'ccan', 'Cc03_g04830' => 'ccan', 'Cc03_g04850' => 'ccan', 'CDE02G4469' => 'cde', 'CDE06G0883' => 'cde', 'CDE06G1295' => 'cde', 'CDE06G1390' => 'cde', 'CDE07G0584' => 'cde', 'CDE07G1084' => 'cde', 'CDE08G1259' => 'cde', 'Cfa002341' => 'cfa', 'Cfa024337' => 'cfa', 'Ciclev10004749m.g' => 'ccl', 'Ciclev10006127m.g' => 'ccl', 'Ciclev10019720m.g' => 'ccl', 'Ciclev10022652m.g' => 'ccl', 'CiPaw.01G190400' => 'cil', 'CiPaw.01G190500' => 'cil', 'CiPaw.02G116400' => 'cil', 'CiPaw.02G116500' => 'cil', 'CiPaw.04G183000' => 'cil', 'CiPaw.04G183300' => 'cil', 'ClCG05G004610' => 'cla', 'ClCG05G004620' => 'cla', 'ClCG06G006730' => 'cla', 'ClCG06G006740' => 'cla', 'ClCG11G003690' => 'cla', 'COL.COLO4_08276' => 'col', 'COL.COLO4_08277' => 'col', 'COL.COLO4_15787' => 'col', 'COL.COLO4_15789' => 'col', 'Cpa.g.c44815' => 'cpa', 'Cpa.g.sc52.144' => 'cpa', 'Cpa.g.sc58.46' => 'cpa', 'Cpa.g.sc58.47' => 'cpa', 'Cre08.g360900' => 'cre', 'CsaV3_2G013030' => 'csa', 'CsaV3_2G013050' => 'csa', 'CsaV3_2G015620' => 'csa', 'CsaV3_3G012590' => 'csa', 'CsaV3_3G012600' => 'csa', 'CSS0001641' => 'camsi', 'CSS0008310' => 'camsi', 'CSS0013011' => 'camsi', 'CSS0017147' => 'camsi', 'CSS0022970' => 'camsi', 'CSS0025655' => 'camsi', 'CSS0028665' => 'camsi', 'CSS0029117' => 'camsi', 'CSS0032024' => 'camsi', 'CSS0039681' => 'camsi', 'CSS0046516' => 'camsi', 'CSS0050307' => 'camsi', 'DCAR_005871' => 'dca', 'DCAR_007342' => 'dca', 'DCAR_024228' => 'dca', 'DCAR_027277' => 'dca', 'DCAR_030718' => 'dca', 'Dinv20287' => 'din', 'Dinv22461' => 'din', 'Dinv22464' => 'din', 'Dinv29912' => 'din', 'Dinv29913' => 'din', 'Dinv34580' => 'din', 'Dinv34582' => 'din', 'Dinv44632' => 'din', 'Duzib052G0266' => 'dzi', 'Duzib133G0907' => 'dzi', 'Duzib133G1034' => 'dzi', 'Duzib138G0207' => 'dzi', 'Duzib138G0491' => 'dzi', 'Duzib151G0812' => 'dzi', 'Duzib151G1166' => 'dzi', 'Duzib168G0192' => 'dzi', 'Duzib211G0077' => 'dzi', 'Duzib212G0429' => 'dzi', 'Duzib212G0472' => 'dzi', 'ECA233G2617' => 'eca', 'ECA236G4188' => 'eca', 'ECA240G0936' => 'eca', 'ECA240G1129' => 'eca', 'ECA247G0623' => 'eca', 'EL10Ac5g10451' => 'bvu', 'EL10Ac5g10453' => 'bvu', 'EL10Ac5g10894' => 'bvu', 'Eucgr.H00192' => 'egr', 'Eucgr.H00193' => 'egr', 'Eucgr.H00194' => 'egr', 'Eucgr.J01562' => 'egr', 'Eucgr.K03301' => 'egr', 'FAN02G0632' => 'fan', 'FAN05G5378' => 'fan', 'FAN09G3247' => 'fan', 'FAN12G0435' => 'fan', 'FAN12G2426' => 'fan', 'FAN14G1707' => 'fan', 'FAN14G4725' => 'fan', 'FAN15G2071' => 'fan', 'FAN17G3065' => 'fan', 'FAN19G1376' => 'fan', 'FAN20G0354' => 'fan', 'FAN20G2429' => 'fan', 'FAN20G2658' => 'fan', 'FAN24G2343' => 'fan', 'FAN27G2362' => 'fan', 'FAN28G1765' => 'fan', 'FvH4_1g16020' => 'fve', 'FvH4_2g04890' => 'fve', 'FvH4_2g22270' => 'fve', 'FvH4_4g02630' => 'fve', 'FvH4_4g02640' => 'fve', 'FvH4_6g02650' => 'fve', 'Glyma.02G140600' => 'gma', 'Glyma.03G159900' => 'gma', 'Glyma.05G234800' => 'gma', 'Glyma.07G269600' => 'gma', 'Glyma.08G042300' => 'gma', 'Glyma.10G033500' => 'gma', 'Glyma.10G185200' => 'gma', 'Glyma.17G004300' => 'gma', 'Glyma.19G161900' => 'gma', 'Glyma.20G205100' => 'gma', 'Glyma.20G205200' => 'gma', 'Gohir.A01G139101' => 'ghi', 'Gohir.A02G035600' => 'ghi', 'Gohir.A02G117901' => 'ghi', 'Gohir.A07G210100' => 'ghi', 'Gohir.A07G210200' => 'ghi', 'Gohir.A08G061100' => 'ghi', 'Gohir.A09G223000' => 'ghi', 'Gohir.A09G223100' => 'ghi', 'Gohir.A10G113900' => 'ghi', 'Gohir.A10G114000' => 'ghi', 'Gohir.D02G042300' => 'ghi', 'Gohir.D07G216100' => 'ghi', 'Gohir.D07G216200' => 'ghi', 'Gohir.D08G070400' => 'ghi', 'Gohir.D09G225000' => 'ghi', 'Gohir.D09G225100' => 'ghi', 'Gohir.D10G152300' => 'ghi', 'Gohir.D10G153200' => 'ghi', 'Gohir.D11G133701' => 'ghi', 'Gorai.004G074100' => 'gra', 'Gorai.005G046800' => 'gra', 'Gorai.006G246500' => 'gra', 'Gorai.006G246600' => 'gra', 'Gorai.007G142900' => 'gra', 'Gorai.011G171000' => 'gra', 'Gorai.011G171100' => 'gra', 'Gorai.013G104300' => 'gra', 'Gorai.013G104400' => 'gra', 'GSVIVG01000754001' => 'vvi', 'GSVIVG01000756001' => 'vvi', 'GSVIVG01010903001' => 'vvi', 'GSVIVG01017623001' => 'vvi', 'GSVIVG01018113001' => 'vvi', 'GSVIVG01018116001' => 'vvi', 'GSVIVG01018118001' => 'vvi', 'HanXRQChr03g0076211' => 'han', 'HanXRQChr03g0092431' => 'han', 'HanXRQChr03g0092441' => 'han', 'HanXRQChr03g0092591' => 'han', 'HanXRQChr03g0092671' => 'han', 'HanXRQChr03g0092681' => 'han', 'HanXRQChr03g0092691' => 'han', 'HanXRQChr03g0092701' => 'han', 'HanXRQChr03g0092721' => 'han', 'HanXRQChr03g0092731' => 'han', 'HanXRQChr04g0113681' => 'han', 'HanXRQChr10g0281371' => 'han', 'HanXRQChr11g0337141' => 'han', 'HanXRQChr13g0424521' => 'han', 'HanXRQChr13g0424531' => 'han', 'HanXRQChr13g0424541' => 'han', 'HanXRQChr16g0498221' => 'han', 'Haze_04377' => 'cav', 'Haze_11298' => 'cav', 'Haze_24547' => 'cav', 'Haze_24550' => 'cav', 'Haze_26587' => 'cav', 'Hma1.2p1_0650F.1_g195410' => 'hma', 'Hma1.2p1_0893F.1_g233470' => 'hma', 'HPP92_006508' => 'vpl', 'HPP92_024780' => 'vpl', 'Hund02688' => 'sun', 'Hund09380' => 'sun', 'Hund09381' => 'sun', 'Hund09832' => 'sun', 'Hund09833' => 'sun', 'Hund11351' => 'sun', 'Hund11513' => 'sun', 'Lalb_Chr06g0162591' => 'lal', 'Lalb_Chr06g0162601' => 'lal', 'Lalb_Chr06g0169321' => 'lal', 'Lalb_Chr09g0330951' => 'lal', 'Lalb_Chr16g0387631' => 'lal', 'Lalb_Chr21g0306241' => 'lal', 'Lalb_Chr25g0290051' => 'lal', 'Lalb_Chr25g0290061' => 'lal', 'Lalb_Chr25g0290071' => 'lal', 'Lj1g0003876' => 'lja', 'Lj1P1207T36' => 'lonja', 'Lj2C1156G12' => 'lonja', 'Lj3A793G39' => 'lonja', 'Lj3C580G2' => 'lonja', 'Lj3C780G2' => 'lonja', 'Lj3C780T4' => 'lonja', 'Lj3C793G9' => 'lonja', 'Lj4g0012960' => 'lja', 'Lj5g0021252' => 'lja', 'Lj5g0021484' => 'lja', 'Lj5g0024528' => 'lja', 'Lj6A399T12' => 'lonja', 'Lj6A656G65' => 'lonja', 'Lsat_1_v5_gn_3_125500' => 'lsa', 'Lsat_1_v5_gn_3_125540' => 'lsa', 'Lsat_1_v5_gn_5_72701' => 'lsa', 'Lsat_1_v5_gn_8_91560' => 'lsa', 'Lsat_1_v5_gn_9_9640' => 'lsa', 'Manes.01G200600' => 'mes', 'Manes.01G200700' => 'mes', 'Manes.03G168900' => 'mes', 'Manes.03G169000' => 'mes', 'Manes.05G085801' => 'mes', 'Manes.05G086200' => 'mes', 'Manes.15G036700' => 'mes', 'Manes.15G036900' => 'mes', 'Mapoly0004s0172' => 'mpo', 'Mapoly0023s0001' => 'mpo', 'Mapoly0142s0012' => 'mpo', 'MBI01_g32854_MAGBIO' => 'mbi', 'MBI11_g24427_MAGBIO' => 'mbi', 'MBI11_g47319_MAGBIO' => 'mbi', 'MCO01G433' => 'mco', 'MD00G1187800' => 'mdo', 'MD04G1226500' => 'mdo', 'MD05G1203900' => 'mdo', 'MD10G1191100' => 'mdo', 'MD12G1243500' => 'mdo', 'MD13G1207000' => 'mdo', 'MD13G1207100' => 'mdo', 'MD16G1208600' => 'mdo', 'Medtr1g050352' => 'mtr', 'Medtr1g070385' => 'mtr', 'Medtr1g070450' => 'mtr', 'Medtr1g075200' => 'mtr', 'Medtr1g075250' => 'mtr', 'Medtr1g075260' => 'mtr', 'Medtr1g475250' => 'mtr', 'Medtr4g075450' => 'mtr', 'Medtr7g096300' => 'mtr', 'Medtr8g105110' => 'mtr', 'MELO3C006470.2' => 'cme', 'MELO3C006471.2' => 'cme', 'MELO3C020772.2' => 'cme', 'MELO3C026780.2' => 'cme', 'MELO3C026781.2' => 'cme', 'Migut.D00390' => 'egut', 'Migut.G00435' => 'egut', 'Migut.G00436' => 'egut', 'Migut.G00718' => 'egut', 'MSTRG.21891' => 'ama', 'MSTRG.26910' => 'ama', 'MSTRG.4099' => 'ama', 'MSTRG.9925' => 'ama', 'Nitab4.5_0000165g0010' => 'nta', 'Nitab4.5_0000209g0180' => 'nta', 'Nitab4.5_0000244g0440' => 'nta', 'Nitab4.5_0000525g0220' => 'nta', 'Nitab4.5_0001597g0020' => 'nta', 'Nitab4.5_0001878g0040' => 'nta', 'Nitab4.5_0001878g0060' => 'nta', 'Nitab4.5_0002838g0100' => 'nta', 'Nitab4.5_0002838g0120' => 'nta', 'Nitab4.5_0004798g0030' => 'nta', 'Nitab4.5_0005420g0010' => 'nta', 'Nitab4.5_0005507g0010' => 'nta', 'Nitab4.5_0005574g0020' => 'nta', 'Nitab4.5_0005838g0010' => 'nta', 'Nitab4.5_0010580g0020' => 'nta', 'Nn1g02599' => 'nnu', 'Nn1g02608' => 'nnu', 'Nn3g17742' => 'nnu', 'Nn3g19534' => 'nnu', 'Nn3g19535' => 'nnu', 'Oeu008790.1' => 'oeu', 'Oeu008792.1' => 'oeu', 'Oeu032590.1' => 'oeu', 'Oeu035349.1' => 'oeu', 'Oeu049791.1' => 'oeu', 'Os01g0774500' => 'osa', 'Os03g0628800' => 'osa', 'Os03g0798600' => 'osa', 'Os05g0508800' => 'osa', 'Peaxi162Scf00036g02018' => 'pax', 'Peaxi162Scf00578g00032' => 'pax', 'Peaxi162Scf00578g00317' => 'pax', 'Peaxi162Scf00785g00114' => 'pax', 'Peaxi162Scf00813g00119' => 'pax', 'Peaxi162Scf00906g00227' => 'pax', 'PGR004G0875' => 'pgr', 'PGR004G2424' => 'pgr', 'PGR031G1239' => 'pgr', 'PGR031G2474' => 'pgr', 'PGR044G0423' => 'pgr', 'PGSC0003DMG400001128' => 'stu', 'PGSC0003DMG400007336' => 'stu', 'PGSC0003DMG400016318' => 'stu', 'PGSC0003DMG400016319' => 'stu', 'PGSC0003DMG400018074' => 'stu', 'Phvul.001G157700' => 'pvu', 'Phvul.002G148550' => 'pvu', 'Phvul.002G320200' => 'pvu', 'Phvul.003G089200' => 'pvu', 'Phvul.007G126000' => 'pvu', 'Phvul.007G126100' => 'pvu', 'Phvul.007G178000' => 'pvu', 'Phvul.007G178200' => 'pvu', 'Potri.002G043000' => 'ptr', 'Potri.002G043200' => 'ptr', 'Potri.003G123750' => 'ptr', 'Potri.005G055401' => 'ptr', 'Potri.005G219700' => 'ptr', 'Potri.005G220000' => 'ptr', 'Potri.008G161901' => 'ptr', 'Potri.008G162000' => 'ptr', 'Potri.008G162400' => 'ptr', 'Potri.010G076900' => 'ptr', 'Pp3c12_9180' => 'ppa', 'Pp3c13_19770' => 'ppa', 'Pp3c14_22950' => 'ppa', 'Pp3c16_12160' => 'ppa', 'Pp3c27_7820' => 'ppa', 'Pp3c2_3490' => 'ppa', 'Pp3c3_23700' => 'ppa', 'Pp3c3_36520' => 'ppa', 'Pp3c4_15250' => 'ppa', 'PRCOL_00007002' => 'pco', 'Prupe.1G030600' => 'ppe', 'Prupe.1G030700' => 'ppe', 'Prupe.6G345200' => 'ppe', 'Prupe.8G230300' => 'ppe', 'Prupe.8G230500' => 'ppe', 'Psat3g059600' => 'psa', 'Psat5g200920' => 'psa', 'Psat6g056440' => 'psa', 'Psat6g057360' => 'psa', 'Psat6g134120' => 'psa', 'Psat6g134160' => 'psa', 'Psat7g008640' => 'psa', 'Psat7g185240' => 'psa', 'PSO017G1330' => 'pso', 'PSO063G6097' => 'pso', 'PSO170G0835' => 'pso', 'PSO170G2499' => 'pso', 'PSO210G5058' => 'pso', 'PSO210G6154' => 'pso', 'PSO585G0031' => 'pso', 'PSO832G0264' => 'pso', 'PSO832G4288' => 'pso', 'QL03p027355' => 'qlo', 'QL03p027430' => 'qlo', 'QL04p081380' => 'qlo', 'QL06p015642' => 'qlo', 'QL06p015650' => 'qlo', 'QL06p015686' => 'qlo', 'QL12p042927' => 'qlo', 'QL93p1863_0035' => 'qlo', 'RcHm_v2.0_Chr3g0450581' => 'rch', 'RcHm_v2.0_Chr4g0390371' => 'rch', 'RcHm_v2.0_Chr4g0390381' => 'rch', 'RcHm_v2.0_Chr4g0390491' => 'rch', 'RcHm_v2.0_Chr4g0390501' => 'rch', 'RcHm_v2.0_Chr6g0289231' => 'rch', 'Rhsim04G0190400' => 'rsi', 'Rhsim04G0190500' => 'rsi', 'Rhsim04G0190600' => 'rsi', 'Rhsim13G0031400' => 'rsi', 'Rhsim13G0165600' => 'rsi', 'RhsimUnG0114600' => 'rsi', 'RhsimUnG0114700' => 'rsi', 'Sabra02G0034800' => 'sbr', 'Sabra02G0035100' => 'sbr', 'Sabra05G0168600' => 'sbr', 'Sabra05G0168800' => 'sbr', 'Sabra08G0123700' => 'sbr', 'Sabra10G0031900' => 'sbr', 'Sabra13G0039000' => 'sbr', 'SalBow2G0782' => 'sbo', 'SalBow2G1403' => 'sbo', 'SalBow4G0074' => 'sbo', 'SalBow4G2635' => 'sbo', 'SalBow5G3010' => 'sbo', 'Sc05g0000870' => 'sci', 'Sc05g0000890' => 'sci', 'Sc13g0005000' => 'sci', 'Sc13g0005030' => 'sci', 'Sc19g0003790' => 'sci', 'Sc19g0003800' => 'sci', 'Sed0003467' => 'sed', 'Sed0009355' => 'sed', 'Sed0009894' => 'sed', 'Sed0011972' => 'sed', 'Sed0021483' => 'sed', 'Sed0021750' => 'sed', 'Sed0026279' => 'sed', 'SEGI_05312' => 'sgi', 'SEGI_10112' => 'sgi', 'SEGI_15835' => 'sgi', 'SEGI_30386' => 'sgi', 'SEGI_34122' => 'sgi', 'SEGI_35063' => 'sgi', 'SGA_v2.0_scaffold101G29794' => 'sas', 'SGA_v2.0_scaffold1G00573' => 'sas', 'SGA_v2.0_scaffold79G25637' => 'sas', 'SGA_v2.0_scaffold88G27283' => 'sas', 'SGA_v2.0_scaffold88G27285' => 'sas', 'SGA_v2.0_scaffold88G27331' => 'sas', 'SHI09937' => 'shi', 'SMO119G0302' => 'smo', 'SMO137G0231' => 'smo', 'SMO367G1151' => 'smo', 'Solyc02g082000.3' => 'sly', 'Solyc06g031670.3' => 'sly', 'Solyc06g053810.3' => 'sly', 'Solyc07g025457.1' => 'sly', 'Solyc08g059740.1' => 'sly', 'Solyc08g059750.3' => 'sly', 'Solyc09g083370.3' => 'sly', 'Solyc12g038950.3' => 'sly', 'Sopen02g026630' => 'spe', 'Sopen06g018930' => 'spe', 'Sopen06g018940' => 'spe', 'Sopen08g009460' => 'spe', 'Sopen09g032290' => 'spe', 'Sp1g03080' => 'spa', 'Sp1g03090' => 'spa', 'Sp1g05480' => 'spa', 'Sp2g07860' => 'spa', 'Sp2g08430' => 'spa', 'Sp2g08440' => 'spa', 'Sp2g26200' => 'spa', 'Sp4g13170' => 'spa', 'Sp6g33840' => 'spa', 'SpUn1204_0010' => 'spa', 'TAR365G0908' => 'tar', 'TAR381G1270' => 'tar', 'TAR381G1651' => 'tar', 'TAR625G1131' => 'tar', 'TAR633G0962' => 'tar', 'TAR633G1729' => 'tar', 'TAR633G1864' => 'tar', 'TAR636G0221' => 'tar', 'TAR636G0314' => 'tar', 'TAR636G3202' => 'tar', 'THA.LOC104800805' => 'tha', 'THA.LOC104801096' => 'tha', 'THA.LOC104801555' => 'tha', 'THA.LOC104808491' => 'tha', 'THA.LOC104808595' => 'tha', 'THA.LOC104815985' => 'tha', 'THA.LOC104822250' => 'tha', 'THA.LOC104826071' => 'tha', 'Thecc.01G265200' => 'tca', 'Thecc.01G265300' => 'tca', 'Thecc.01G265700' => 'tca', 'Thecc.03G109100' => 'tca', 'Thecc.04G245900' => 'tca', 'Thecc.04G246000' => 'tca', 'Thhalv10003334m.g' => 'esa', 'Thhalv10005508m.g' => 'esa', 'Thhalv10005643m.g' => 'esa', 'Thhalv10007316m.g' => 'esa', 'Thhalv10009006m.g' => 'esa', 'Thhalv10009309m.g' => 'esa', 'Thhalv10014917m.g' => 'esa', 'Thhalv10014919m.g' => 'esa', 'Thhalv10015393m.g' => 'esa', 'Thhalv10016515m.g' => 'esa', 'Thhalv10029242m.g' => 'esa', 'TPR.G16654' => 'tpr', 'TPR.G20589' => 'tpr', 'TPR.G23029' => 'tpr', 'TPR.G27731' => 'tpr', 'TPR.G28889' => 'tpr', 'TPR.G28899' => 'tpr', 'TPR.G30846' => 'tpr', 'TPR.G5452' => 'tpr', 'TPR.G5713' => 'tpr', 'TPR.G9046' => 'tpr', 'TPR.G9061' => 'tpr', 'TWI09G1075' => 'twi', 'TWI12G0806' => 'twi', 'TWI18G0108' => 'twi', 'TWI53G1361' => 'twi', 'TWI73G0185' => 'twi', 'TWI73G0427' => 'twi', 'unitig_37.g12001' => 'ugi', 'unitig_747.g21660' => 'ugi', 'unitig_748.g7232' => 'ugi', 'unitig_748.g7315' => 'ugi', 'unitig_85.g27262' => 'ugi', 'unitig_92.g28220' => 'ugi', 'vmacro02632' => 'vma', 'vmacro08410' => 'vma', 'vmacro08411' => 'vma', 'vmacro15407' => 'vma', 'VMungo0251G3619' => 'vmu', 'VMungo0720G1204' => 'vmu', 'VMungo0720G1918' => 'vmu', 'VMungo0720G2387' => 'vmu', 'VMungo0720G2961' => 'vmu', 'VMungo1215G2154' => 'vmu', 'VMungo1383G2411' => 'vmu', 'Zm00001eb051130' => 'zma', 'Zm00001eb116830' => 'zma', 'Zm00001eb116850' => 'zma', 'Zm00001eb151740' => 'zma', 'Zm00001eb292360' => 'zma', 'Zm00001eb301640' => 'zma' ) $gf_id = 'HOM05D000856' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000856' ) $data_identifier = 'HOM05D000856' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 13, 'ath' => (int) 10, 'atr' => (int) 1, 'acertr' => (int) 8, 'cqu' => (int) 6, 'bca' => (int) 21, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 11, 'car' => (int) 9, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 8, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 5, 'fan' => (int) 16, 'fve' => (int) 6, 'gma' => (int) 11, 'ghi' => (int) 19, 'gra' => (int) 9, 'vvi' => (int) 7, 'han' => (int) 17, 'cav' => (int) 5, 'hma' => (int) 2, 'vpl' => (int) 2, 'sun' => (int) 7, 'lal' => (int) 9, 'lja' => (int) 5, 'lonja' => (int) 9, 'lsa' => (int) 5, 'mes' => (int) 8, 'mpo' => (int) 3, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 10, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 15, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 9, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 9, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 6, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 5, 'spa' => (int) 10, 'tar' => (int) 10, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 11, 'tpr' => (int) 11, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 4, 'vmu' => (int) 7, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb301640' $species_info = array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ) $local_species = 'rsi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000856', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p00010' => 'bna', 'A03p04160' => 'bna', 'A03p17160' => 'bna', 'A04p23370' => 'bna', 'A05p14860' => 'bna', 'A08p37020' => 'bna', 'A09p08050' => 'bna', 'A09p66800' => 'bna', 'A09p67940' => 'bna', 'A10p02680' => 'bna', 'A10p05320' => 'bna', 'Aa31LG1G20560' => 'aar', 'Aa31LG1G20610' => 'aar', 'Aa31LG1G7810' => 'aar', 'Aa31LG5G3590' => 'aar', 'Aa31LG5G6140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3819' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4683' => 'aag', 'Actinidia04480' => 'ach', 'Actinidia05466' => 'ach', 'Actinidia08445' => 'ach', 'Actinidia21170' => 'ach', 'Actinidia24812' => 'ach', 'Actinidia24951' => 'ach', 'Actinidia40088' => 'ach', 'Ah.02g111660' => 'amhyb', 'Ah.11g048900' => 'amhyb', 'Ah.11g049910' => 'amhyb', 'AL1G13870' => 'aly', 'AL1G13880' => 'aly', 'AL1G16760' => 'aly', 'AL390U10020' => 'aly', 'AL4G25520' => 'aly', 'AL6G19890' => 'aly', 'AL6G19900' => 'aly', 'AL6G19910' => 'aly', 'AL8G40100' => 'aly', 'Aqoxy2G03562' => 'aox', 'Aqoxy5G00316' => 'aox', 'Aqoxy5G00926' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1628KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1H403S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2FU6SJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.882I6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8YRY2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YN1SN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AF70II' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZA8L1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F916KL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHRD8H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KTZ8QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S22EMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8M29T' => 'arhy', 'AT1G04270' => 'ath', 'AT1G04280' => 'ath', 'AT1G06750' => 'ath', 'AT1G33850' => 'ath', 'AT2G30630' => 'ath', 'AT5G09490' => 'ath', 'AT5G09500' => 'ath', 'AT5G09510' => 'ath', 'AT5G43640' => 'ath', 'AT5G63070' => 'ath', 'ATR0605G315' => 'atr', 'Atru.chr11.175' => 'acertr', 'Atru.chr11.653' => 'acertr', 'Atru.chr3.1616' => 'acertr', 'Atru.chr4.2230' => 'acertr', 'Atru.chr4.2232' => 'acertr', 'Atru.chr5.1598' => 'acertr', 'Atru.chr5.1600' => 'acertr', 'Atru.chr5.2188' => 'acertr', 'AUR62008326' => 'cqu', 'AUR62011922' => 'cqu', 'AUR62011924' => 'cqu', 'AUR62021771' => 'cqu', 'AUR62032237' => 'cqu', 'AUR62032240' => 'cqu', 'BcaB01g05572' => 'bca', 'BcaB02g10337' => 'bca', 'BcaB04g19944' => 'bca', 'BcaB05g21548' => 'bca', 'BcaB05g21549' => 'bca', 'BcaB05g23227' => 'bca', 'BcaB06g26256' => 'bca', 'BcaB06g26257' => 'bca', 'BcaB06g28379' => 'bca', 'BcaC02g11159' => 'bca', 'BcaC03g13258' => 'bca', 'BcaC03g13259' => 'bca', 'BcaC05g24456' => 'bca', 'BcaC05g24457' => 'bca', 'BcaC07g36922' => 'bca', 'BcaC07g36923' => 'bca', 'BcaC07g42050' => 'bca', 'BcaC07g42176' => 'bca', 'BcaC07g42195' => 'bca', 'BcaC07g42196' => 'bca', 'BcaNung06674' => 'bca', 'BolC2t06351H' => 'bol', 'BolC2t06352H' => 'bol', 'BolC3t12993H' => 'bol', 'BolC4t23525H' => 'bol', 'BolC4t27475H' => 'bol', 'BolC5t29025H' => 'bol', 'BolC5t29026H' => 'bol', 'BolC8t46898H' => 'bol', 'BolC8t46899H' => 'bol', 'BolC8t52630H' => 'bol', 'BolC8t52765H' => 'bol', 'BolC9t53824H' => 'bol', 'BraA03t09760Z' => 'bra', 'BraA03t10990Z' => 'bra', 'BraA05t20413Z' => 'bra', 'BraA08t35602Z' => 'bra', 'BraA09t36458Z' => 'bra', 'BraA09t42018Z' => 'bra', 'BraA09t42129Z' => 'bra', 'BraA10t42536Z' => 'bra', 'BraA10t42537Z' => 'bra', 'C01p10690' => 'bna', 'C02p03890' => 'bna', 'C02p03900' => 'bna', 'C03p04620' => 'bna', 'C04p19870' => 'bna', 'C04p59670' => 'bna', 'C05p02460' => 'bna', 'C05p02470' => 'bna', 'C08p00980' => 'bna', 'C08p00990' => 'bna', 'C08p51030' => 'bna', 'C08p52360' => 'bna', 'C09p09120' => 'bna', 'CAN.G19.15' => 'can', 'CAN.G251.10' => 'can', 'CAN.G251.9' => 'can', 'CAN.G398.24' => 'can', 'CAN.G410.32' => 'can', 'CAN.G881.2' => 'can', 'CANSAT01G3025' => 'cansat', 'CANSAT78G1211' => 'cansat', 'CANSAT78G1218' => 'cansat', 'CANSAT78G1521' => 'cansat', 'CANSAT78G1670' => 'cansat', 'CARHR003600' => 'chi', 'CARHR003610' => 'chi', 'CARHR006290' => 'chi', 'CARHR006430' => 'chi', 'CARHR124110' => 'chi', 'CARHR203870' => 'chi', 'CARHR203880' => 'chi', 'CARHR203890' => 'chi', 'CARHR276880' => 'chi', 'Carub.0001s0346' => 'cru', 'Carub.0001s0347' => 'cru', 'Carub.0001s0607' => 'cru', 'Carub.0003s2768' => 'cru', 'Carub.0003s2769' => 'cru', 'Carub.0004s1178' => 'cru', 'Carub.0006s0806' => 'cru', 'Carub.0006s0807' => 'cru', 'Carub.0006s0808' => 'cru', 'Carub.0008s0501' => 'cru', 'Carub.0008s2379' => 'cru', 'Ca_08655_v3' => 'car', 'Ca_08922_v3' => 'car', 'Ca_08923_v3' => 'car', 'Ca_09119_v3' => 'car', 'Ca_09703_v3' => 'car', 'Ca_09705_v3' => 'car', 'Ca_09835_v3' => 'car', 'Ca_26403_v3' => 'car', 'Ca_30719_v3' => 'car', 'CBR_g17958' => 'cbr', 'CBR_g40516' => 'cbr', 'Cc00_g05350' => 'ccan', 'Cc01_g18690' => 'ccan', 'Cc03_g04830' => 'ccan', 'Cc03_g04850' => 'ccan', 'CDE02G4469' => 'cde', 'CDE06G0883' => 'cde', 'CDE06G1295' => 'cde', 'CDE06G1390' => 'cde', 'CDE07G0584' => 'cde', 'CDE07G1084' => 'cde', 'CDE08G1259' => 'cde', 'Cfa002341' => 'cfa', 'Cfa024337' => 'cfa', 'Ciclev10004749m.g' => 'ccl', 'Ciclev10006127m.g' => 'ccl', 'Ciclev10019720m.g' => 'ccl', 'Ciclev10022652m.g' => 'ccl', 'CiPaw.01G190400' => 'cil', 'CiPaw.01G190500' => 'cil', 'CiPaw.02G116400' => 'cil', 'CiPaw.02G116500' => 'cil', 'CiPaw.04G183000' => 'cil', 'CiPaw.04G183300' => 'cil', 'ClCG05G004610' => 'cla', 'ClCG05G004620' => 'cla', 'ClCG06G006730' => 'cla', 'ClCG06G006740' => 'cla', 'ClCG11G003690' => 'cla', 'COL.COLO4_08276' => 'col', 'COL.COLO4_08277' => 'col', 'COL.COLO4_15787' => 'col', 'COL.COLO4_15789' => 'col', 'Cpa.g.c44815' => 'cpa', 'Cpa.g.sc52.144' => 'cpa', 'Cpa.g.sc58.46' => 'cpa', 'Cpa.g.sc58.47' => 'cpa', 'Cre08.g360900' => 'cre', 'CsaV3_2G013030' => 'csa', 'CsaV3_2G013050' => 'csa', 'CsaV3_2G015620' => 'csa', 'CsaV3_3G012590' => 'csa', 'CsaV3_3G012600' => 'csa', 'CSS0001641' => 'camsi', 'CSS0008310' => 'camsi', 'CSS0013011' => 'camsi', 'CSS0017147' => 'camsi', 'CSS0022970' => 'camsi', 'CSS0025655' => 'camsi', 'CSS0028665' => 'camsi', 'CSS0029117' => 'camsi', 'CSS0032024' => 'camsi', 'CSS0039681' => 'camsi', 'CSS0046516' => 'camsi', 'CSS0050307' => 'camsi', 'DCAR_005871' => 'dca', 'DCAR_007342' => 'dca', 'DCAR_024228' => 'dca', 'DCAR_027277' => 'dca', 'DCAR_030718' => 'dca', 'Dinv20287' => 'din', 'Dinv22461' => 'din', 'Dinv22464' => 'din', 'Dinv29912' => 'din', 'Dinv29913' => 'din', 'Dinv34580' => 'din', 'Dinv34582' => 'din', 'Dinv44632' => 'din', 'Duzib052G0266' => 'dzi', 'Duzib133G0907' => 'dzi', 'Duzib133G1034' => 'dzi', 'Duzib138G0207' => 'dzi', 'Duzib138G0491' => 'dzi', 'Duzib151G0812' => 'dzi', 'Duzib151G1166' => 'dzi', 'Duzib168G0192' => 'dzi', 'Duzib211G0077' => 'dzi', 'Duzib212G0429' => 'dzi', 'Duzib212G0472' => 'dzi', 'ECA233G2617' => 'eca', 'ECA236G4188' => 'eca', 'ECA240G0936' => 'eca', 'ECA240G1129' => 'eca', 'ECA247G0623' => 'eca', 'EL10Ac5g10451' => 'bvu', 'EL10Ac5g10453' => 'bvu', 'EL10Ac5g10894' => 'bvu', 'Eucgr.H00192' => 'egr', 'Eucgr.H00193' => 'egr', 'Eucgr.H00194' => 'egr', 'Eucgr.J01562' => 'egr', 'Eucgr.K03301' => 'egr', 'FAN02G0632' => 'fan', 'FAN05G5378' => 'fan', 'FAN09G3247' => 'fan', 'FAN12G0435' => 'fan', 'FAN12G2426' => 'fan', 'FAN14G1707' => 'fan', 'FAN14G4725' => 'fan', 'FAN15G2071' => 'fan', 'FAN17G3065' => 'fan', 'FAN19G1376' => 'fan', 'FAN20G0354' => 'fan', 'FAN20G2429' => 'fan', 'FAN20G2658' => 'fan', 'FAN24G2343' => 'fan', 'FAN27G2362' => 'fan', 'FAN28G1765' => 'fan', 'FvH4_1g16020' => 'fve', 'FvH4_2g04890' => 'fve', 'FvH4_2g22270' => 'fve', 'FvH4_4g02630' => 'fve', 'FvH4_4g02640' => 'fve', 'FvH4_6g02650' => 'fve', 'Glyma.02G140600' => 'gma', 'Glyma.03G159900' => 'gma', 'Glyma.05G234800' => 'gma', 'Glyma.07G269600' => 'gma', 'Glyma.08G042300' => 'gma', 'Glyma.10G033500' => 'gma', 'Glyma.10G185200' => 'gma', 'Glyma.17G004300' => 'gma', 'Glyma.19G161900' => 'gma', 'Glyma.20G205100' => 'gma', 'Glyma.20G205200' => 'gma', 'Gohir.A01G139101' => 'ghi', 'Gohir.A02G035600' => 'ghi', 'Gohir.A02G117901' => 'ghi', 'Gohir.A07G210100' => 'ghi', 'Gohir.A07G210200' => 'ghi', 'Gohir.A08G061100' => 'ghi', 'Gohir.A09G223000' => 'ghi', 'Gohir.A09G223100' => 'ghi', 'Gohir.A10G113900' => 'ghi', 'Gohir.A10G114000' => 'ghi', 'Gohir.D02G042300' => 'ghi', 'Gohir.D07G216100' => 'ghi', 'Gohir.D07G216200' => 'ghi', 'Gohir.D08G070400' => 'ghi', 'Gohir.D09G225000' => 'ghi', 'Gohir.D09G225100' => 'ghi', 'Gohir.D10G152300' => 'ghi', 'Gohir.D10G153200' => 'ghi', 'Gohir.D11G133701' => 'ghi', 'Gorai.004G074100' => 'gra', 'Gorai.005G046800' => 'gra', 'Gorai.006G246500' => 'gra', 'Gorai.006G246600' => 'gra', 'Gorai.007G142900' => 'gra', 'Gorai.011G171000' => 'gra', 'Gorai.011G171100' => 'gra', 'Gorai.013G104300' => 'gra', 'Gorai.013G104400' => 'gra', 'GSVIVG01000754001' => 'vvi', 'GSVIVG01000756001' => 'vvi', 'GSVIVG01010903001' => 'vvi', 'GSVIVG01017623001' => 'vvi', 'GSVIVG01018113001' => 'vvi', 'GSVIVG01018116001' => 'vvi', 'GSVIVG01018118001' => 'vvi', 'HanXRQChr03g0076211' => 'han', 'HanXRQChr03g0092431' => 'han', 'HanXRQChr03g0092441' => 'han', 'HanXRQChr03g0092591' => 'han', 'HanXRQChr03g0092671' => 'han', 'HanXRQChr03g0092681' => 'han', 'HanXRQChr03g0092691' => 'han', 'HanXRQChr03g0092701' => 'han', 'HanXRQChr03g0092721' => 'han', 'HanXRQChr03g0092731' => 'han', 'HanXRQChr04g0113681' => 'han', 'HanXRQChr10g0281371' => 'han', 'HanXRQChr11g0337141' => 'han', 'HanXRQChr13g0424521' => 'han', 'HanXRQChr13g0424531' => 'han', 'HanXRQChr13g0424541' => 'han', 'HanXRQChr16g0498221' => 'han', 'Haze_04377' => 'cav', 'Haze_11298' => 'cav', 'Haze_24547' => 'cav', 'Haze_24550' => 'cav', 'Haze_26587' => 'cav', 'Hma1.2p1_0650F.1_g195410' => 'hma', 'Hma1.2p1_0893F.1_g233470' => 'hma', 'HPP92_006508' => 'vpl', 'HPP92_024780' => 'vpl', 'Hund02688' => 'sun', 'Hund09380' => 'sun', 'Hund09381' => 'sun', 'Hund09832' => 'sun', 'Hund09833' => 'sun', 'Hund11351' => 'sun', 'Hund11513' => 'sun', 'Lalb_Chr06g0162591' => 'lal', 'Lalb_Chr06g0162601' => 'lal', 'Lalb_Chr06g0169321' => 'lal', 'Lalb_Chr09g0330951' => 'lal', 'Lalb_Chr16g0387631' => 'lal', 'Lalb_Chr21g0306241' => 'lal', 'Lalb_Chr25g0290051' => 'lal', 'Lalb_Chr25g0290061' => 'lal', 'Lalb_Chr25g0290071' => 'lal', 'Lj1g0003876' => 'lja', 'Lj1P1207T36' => 'lonja', 'Lj2C1156G12' => 'lonja', 'Lj3A793G39' => 'lonja', 'Lj3C580G2' => 'lonja', 'Lj3C780G2' => 'lonja', 'Lj3C780T4' => 'lonja', 'Lj3C793G9' => 'lonja', 'Lj4g0012960' => 'lja', 'Lj5g0021252' => 'lja', 'Lj5g0021484' => 'lja', 'Lj5g0024528' => 'lja', 'Lj6A399T12' => 'lonja', 'Lj6A656G65' => 'lonja', 'Lsat_1_v5_gn_3_125500' => 'lsa', 'Lsat_1_v5_gn_3_125540' => 'lsa', 'Lsat_1_v5_gn_5_72701' => 'lsa', 'Lsat_1_v5_gn_8_91560' => 'lsa', 'Lsat_1_v5_gn_9_9640' => 'lsa', 'Manes.01G200600' => 'mes', 'Manes.01G200700' => 'mes', 'Manes.03G168900' => 'mes', 'Manes.03G169000' => 'mes', 'Manes.05G085801' => 'mes', 'Manes.05G086200' => 'mes', 'Manes.15G036700' => 'mes', 'Manes.15G036900' => 'mes', 'Mapoly0004s0172' => 'mpo', 'Mapoly0023s0001' => 'mpo', 'Mapoly0142s0012' => 'mpo', 'MBI01_g32854_MAGBIO' => 'mbi', 'MBI11_g24427_MAGBIO' => 'mbi', 'MBI11_g47319_MAGBIO' => 'mbi', 'MCO01G433' => 'mco', 'MD00G1187800' => 'mdo', 'MD04G1226500' => 'mdo', 'MD05G1203900' => 'mdo', 'MD10G1191100' => 'mdo', 'MD12G1243500' => 'mdo', 'MD13G1207000' => 'mdo', 'MD13G1207100' => 'mdo', 'MD16G1208600' => 'mdo', 'Medtr1g050352' => 'mtr', 'Medtr1g070385' => 'mtr', 'Medtr1g070450' => 'mtr', 'Medtr1g075200' => 'mtr', 'Medtr1g075250' => 'mtr', 'Medtr1g075260' => 'mtr', 'Medtr1g475250' => 'mtr', 'Medtr4g075450' => 'mtr', 'Medtr7g096300' => 'mtr', 'Medtr8g105110' => 'mtr', 'MELO3C006470.2' => 'cme', 'MELO3C006471.2' => 'cme', 'MELO3C020772.2' => 'cme', 'MELO3C026780.2' => 'cme', 'MELO3C026781.2' => 'cme', 'Migut.D00390' => 'egut', 'Migut.G00435' => 'egut', 'Migut.G00436' => 'egut', 'Migut.G00718' => 'egut', 'MSTRG.21891' => 'ama', 'MSTRG.26910' => 'ama', 'MSTRG.4099' => 'ama', 'MSTRG.9925' => 'ama', 'Nitab4.5_0000165g0010' => 'nta', 'Nitab4.5_0000209g0180' => 'nta', 'Nitab4.5_0000244g0440' => 'nta', 'Nitab4.5_0000525g0220' => 'nta', 'Nitab4.5_0001597g0020' => 'nta', 'Nitab4.5_0001878g0040' => 'nta', 'Nitab4.5_0001878g0060' => 'nta', 'Nitab4.5_0002838g0100' => 'nta', 'Nitab4.5_0002838g0120' => 'nta', 'Nitab4.5_0004798g0030' => 'nta', 'Nitab4.5_0005420g0010' => 'nta', 'Nitab4.5_0005507g0010' => 'nta', 'Nitab4.5_0005574g0020' => 'nta', 'Nitab4.5_0005838g0010' => 'nta', 'Nitab4.5_0010580g0020' => 'nta', 'Nn1g02599' => 'nnu', 'Nn1g02608' => 'nnu', 'Nn3g17742' => 'nnu', 'Nn3g19534' => 'nnu', 'Nn3g19535' => 'nnu', 'Oeu008790.1' => 'oeu', 'Oeu008792.1' => 'oeu', 'Oeu032590.1' => 'oeu', 'Oeu035349.1' => 'oeu', 'Oeu049791.1' => 'oeu', 'Os01g0774500' => 'osa', 'Os03g0628800' => 'osa', 'Os03g0798600' => 'osa', 'Os05g0508800' => 'osa', 'Peaxi162Scf00036g02018' => 'pax', 'Peaxi162Scf00578g00032' => 'pax', 'Peaxi162Scf00578g00317' => 'pax', 'Peaxi162Scf00785g00114' => 'pax', 'Peaxi162Scf00813g00119' => 'pax', 'Peaxi162Scf00906g00227' => 'pax', 'PGR004G0875' => 'pgr', 'PGR004G2424' => 'pgr', 'PGR031G1239' => 'pgr', 'PGR031G2474' => 'pgr', 'PGR044G0423' => 'pgr', 'PGSC0003DMG400001128' => 'stu', 'PGSC0003DMG400007336' => 'stu', 'PGSC0003DMG400016318' => 'stu', 'PGSC0003DMG400016319' => 'stu', 'PGSC0003DMG400018074' => 'stu', 'Phvul.001G157700' => 'pvu', 'Phvul.002G148550' => 'pvu', 'Phvul.002G320200' => 'pvu', 'Phvul.003G089200' => 'pvu', 'Phvul.007G126000' => 'pvu', 'Phvul.007G126100' => 'pvu', 'Phvul.007G178000' => 'pvu', 'Phvul.007G178200' => 'pvu', 'Potri.002G043000' => 'ptr', 'Potri.002G043200' => 'ptr', 'Potri.003G123750' => 'ptr', 'Potri.005G055401' => 'ptr', 'Potri.005G219700' => 'ptr', 'Potri.005G220000' => 'ptr', 'Potri.008G161901' => 'ptr', 'Potri.008G162000' => 'ptr', 'Potri.008G162400' => 'ptr', 'Potri.010G076900' => 'ptr', 'Pp3c12_9180' => 'ppa', 'Pp3c13_19770' => 'ppa', 'Pp3c14_22950' => 'ppa', 'Pp3c16_12160' => 'ppa', 'Pp3c27_7820' => 'ppa', 'Pp3c2_3490' => 'ppa', 'Pp3c3_23700' => 'ppa', 'Pp3c3_36520' => 'ppa', 'Pp3c4_15250' => 'ppa', 'PRCOL_00007002' => 'pco', 'Prupe.1G030600' => 'ppe', 'Prupe.1G030700' => 'ppe', 'Prupe.6G345200' => 'ppe', 'Prupe.8G230300' => 'ppe', 'Prupe.8G230500' => 'ppe', 'Psat3g059600' => 'psa', 'Psat5g200920' => 'psa', 'Psat6g056440' => 'psa', 'Psat6g057360' => 'psa', 'Psat6g134120' => 'psa', 'Psat6g134160' => 'psa', 'Psat7g008640' => 'psa', 'Psat7g185240' => 'psa', 'PSO017G1330' => 'pso', 'PSO063G6097' => 'pso', 'PSO170G0835' => 'pso', 'PSO170G2499' => 'pso', 'PSO210G5058' => 'pso', 'PSO210G6154' => 'pso', 'PSO585G0031' => 'pso', 'PSO832G0264' => 'pso', 'PSO832G4288' => 'pso', 'QL03p027355' => 'qlo', 'QL03p027430' => 'qlo', 'QL04p081380' => 'qlo', 'QL06p015642' => 'qlo', 'QL06p015650' => 'qlo', 'QL06p015686' => 'qlo', 'QL12p042927' => 'qlo', 'QL93p1863_0035' => 'qlo', 'RcHm_v2.0_Chr3g0450581' => 'rch', 'RcHm_v2.0_Chr4g0390371' => 'rch', 'RcHm_v2.0_Chr4g0390381' => 'rch', 'RcHm_v2.0_Chr4g0390491' => 'rch', 'RcHm_v2.0_Chr4g0390501' => 'rch', 'RcHm_v2.0_Chr6g0289231' => 'rch', 'Rhsim04G0190400' => 'rsi', 'Rhsim04G0190500' => 'rsi', 'Rhsim04G0190600' => 'rsi', 'Rhsim13G0031400' => 'rsi', 'Rhsim13G0165600' => 'rsi', 'RhsimUnG0114600' => 'rsi', 'RhsimUnG0114700' => 'rsi', 'Sabra02G0034800' => 'sbr', 'Sabra02G0035100' => 'sbr', 'Sabra05G0168600' => 'sbr', 'Sabra05G0168800' => 'sbr', 'Sabra08G0123700' => 'sbr', 'Sabra10G0031900' => 'sbr', 'Sabra13G0039000' => 'sbr', 'SalBow2G0782' => 'sbo', 'SalBow2G1403' => 'sbo', 'SalBow4G0074' => 'sbo', 'SalBow4G2635' => 'sbo', 'SalBow5G3010' => 'sbo', 'Sc05g0000870' => 'sci', 'Sc05g0000890' => 'sci', 'Sc13g0005000' => 'sci', 'Sc13g0005030' => 'sci', 'Sc19g0003790' => 'sci', 'Sc19g0003800' => 'sci', 'Sed0003467' => 'sed', 'Sed0009355' => 'sed', 'Sed0009894' => 'sed', 'Sed0011972' => 'sed', 'Sed0021483' => 'sed', 'Sed0021750' => 'sed', 'Sed0026279' => 'sed', 'SEGI_05312' => 'sgi', 'SEGI_10112' => 'sgi', 'SEGI_15835' => 'sgi', 'SEGI_30386' => 'sgi', 'SEGI_34122' => 'sgi', 'SEGI_35063' => 'sgi', 'SGA_v2.0_scaffold101G29794' => 'sas', 'SGA_v2.0_scaffold1G00573' => 'sas', 'SGA_v2.0_scaffold79G25637' => 'sas', 'SGA_v2.0_scaffold88G27283' => 'sas', 'SGA_v2.0_scaffold88G27285' => 'sas', 'SGA_v2.0_scaffold88G27331' => 'sas', 'SHI09937' => 'shi', 'SMO119G0302' => 'smo', 'SMO137G0231' => 'smo', 'SMO367G1151' => 'smo', 'Solyc02g082000.3' => 'sly', 'Solyc06g031670.3' => 'sly', 'Solyc06g053810.3' => 'sly', 'Solyc07g025457.1' => 'sly', 'Solyc08g059740.1' => 'sly', 'Solyc08g059750.3' => 'sly', 'Solyc09g083370.3' => 'sly', 'Solyc12g038950.3' => 'sly', 'Sopen02g026630' => 'spe', 'Sopen06g018930' => 'spe', 'Sopen06g018940' => 'spe', 'Sopen08g009460' => 'spe', 'Sopen09g032290' => 'spe', 'Sp1g03080' => 'spa', 'Sp1g03090' => 'spa', 'Sp1g05480' => 'spa', 'Sp2g07860' => 'spa', 'Sp2g08430' => 'spa', 'Sp2g08440' => 'spa', 'Sp2g26200' => 'spa', 'Sp4g13170' => 'spa', 'Sp6g33840' => 'spa', 'SpUn1204_0010' => 'spa', 'TAR365G0908' => 'tar', 'TAR381G1270' => 'tar', 'TAR381G1651' => 'tar', 'TAR625G1131' => 'tar', 'TAR633G0962' => 'tar', 'TAR633G1729' => 'tar', 'TAR633G1864' => 'tar', 'TAR636G0221' => 'tar', 'TAR636G0314' => 'tar', 'TAR636G3202' => 'tar', 'THA.LOC104800805' => 'tha', 'THA.LOC104801096' => 'tha', 'THA.LOC104801555' => 'tha', 'THA.LOC104808491' => 'tha', 'THA.LOC104808595' => 'tha', 'THA.LOC104815985' => 'tha', 'THA.LOC104822250' => 'tha', 'THA.LOC104826071' => 'tha', 'Thecc.01G265200' => 'tca', 'Thecc.01G265300' => 'tca', 'Thecc.01G265700' => 'tca', 'Thecc.03G109100' => 'tca', 'Thecc.04G245900' => 'tca', 'Thecc.04G246000' => 'tca', 'Thhalv10003334m.g' => 'esa', 'Thhalv10005508m.g' => 'esa', 'Thhalv10005643m.g' => 'esa', 'Thhalv10007316m.g' => 'esa', 'Thhalv10009006m.g' => 'esa', 'Thhalv10009309m.g' => 'esa', 'Thhalv10014917m.g' => 'esa', 'Thhalv10014919m.g' => 'esa', 'Thhalv10015393m.g' => 'esa', 'Thhalv10016515m.g' => 'esa', 'Thhalv10029242m.g' => 'esa', 'TPR.G16654' => 'tpr', 'TPR.G20589' => 'tpr', 'TPR.G23029' => 'tpr', 'TPR.G27731' => 'tpr', 'TPR.G28889' => 'tpr', 'TPR.G28899' => 'tpr', 'TPR.G30846' => 'tpr', 'TPR.G5452' => 'tpr', 'TPR.G5713' => 'tpr', 'TPR.G9046' => 'tpr', 'TPR.G9061' => 'tpr', 'TWI09G1075' => 'twi', 'TWI12G0806' => 'twi', 'TWI18G0108' => 'twi', 'TWI53G1361' => 'twi', 'TWI73G0185' => 'twi', 'TWI73G0427' => 'twi', 'unitig_37.g12001' => 'ugi', 'unitig_747.g21660' => 'ugi', 'unitig_748.g7232' => 'ugi', 'unitig_748.g7315' => 'ugi', 'unitig_85.g27262' => 'ugi', 'unitig_92.g28220' => 'ugi', 'vmacro02632' => 'vma', 'vmacro08410' => 'vma', 'vmacro08411' => 'vma', 'vmacro15407' => 'vma', 'VMungo0251G3619' => 'vmu', 'VMungo0720G1204' => 'vmu', 'VMungo0720G1918' => 'vmu', 'VMungo0720G2387' => 'vmu', 'VMungo0720G2961' => 'vmu', 'VMungo1215G2154' => 'vmu', 'VMungo1383G2411' => 'vmu', 'Zm00001eb051130' => 'zma', 'Zm00001eb116830' => 'zma', 'Zm00001eb116850' => 'zma', 'Zm00001eb151740' => 'zma', 'Zm00001eb292360' => 'zma', 'Zm00001eb301640' => 'zma' ), 'gf_id' => 'HOM05D000856', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000856' ), 'data_identifier' => 'HOM05D000856', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000856', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p00010' => 'bna', 'A03p04160' => 'bna', 'A03p17160' => 'bna', 'A04p23370' => 'bna', 'A05p14860' => 'bna', 'A08p37020' => 'bna', 'A09p08050' => 'bna', 'A09p66800' => 'bna', 'A09p67940' => 'bna', 'A10p02680' => 'bna', 'A10p05320' => 'bna', 'Aa31LG1G20560' => 'aar', 'Aa31LG1G20610' => 'aar', 'Aa31LG1G7810' => 'aar', 'Aa31LG5G3590' => 'aar', 'Aa31LG5G6140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3819' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4683' => 'aag', 'Actinidia04480' => 'ach', 'Actinidia05466' => 'ach', 'Actinidia08445' => 'ach', 'Actinidia21170' => 'ach', 'Actinidia24812' => 'ach', 'Actinidia24951' => 'ach', 'Actinidia40088' => 'ach', 'Ah.02g111660' => 'amhyb', 'Ah.11g048900' => 'amhyb', 'Ah.11g049910' => 'amhyb', 'AL1G13870' => 'aly', 'AL1G13880' => 'aly', 'AL1G16760' => 'aly', 'AL390U10020' => 'aly', 'AL4G25520' => 'aly', 'AL6G19890' => 'aly', 'AL6G19900' => 'aly', 'AL6G19910' => 'aly', 'AL8G40100' => 'aly', 'Aqoxy2G03562' => 'aox', 'Aqoxy5G00316' => 'aox', 'Aqoxy5G00926' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1628KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1H403S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2FU6SJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.882I6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8YRY2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YN1SN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AF70II' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZA8L1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F916KL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHRD8H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KTZ8QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S22EMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8M29T' => 'arhy', 'AT1G04270' => 'ath', 'AT1G04280' => 'ath', 'AT1G06750' => 'ath', 'AT1G33850' => 'ath', 'AT2G30630' => 'ath', 'AT5G09490' => 'ath', 'AT5G09500' => 'ath', 'AT5G09510' => 'ath', 'AT5G43640' => 'ath', 'AT5G63070' => 'ath', 'ATR0605G315' => 'atr', 'Atru.chr11.175' => 'acertr', 'Atru.chr11.653' => 'acertr', 'Atru.chr3.1616' => 'acertr', 'Atru.chr4.2230' => 'acertr', 'Atru.chr4.2232' => 'acertr', 'Atru.chr5.1598' => 'acertr', 'Atru.chr5.1600' => 'acertr', 'Atru.chr5.2188' => 'acertr', 'AUR62008326' => 'cqu', 'AUR62011922' => 'cqu', 'AUR62011924' => 'cqu', 'AUR62021771' => 'cqu', 'AUR62032237' => 'cqu', 'AUR62032240' => 'cqu', 'BcaB01g05572' => 'bca', 'BcaB02g10337' => 'bca', 'BcaB04g19944' => 'bca', 'BcaB05g21548' => 'bca', 'BcaB05g21549' => 'bca', 'BcaB05g23227' => 'bca', 'BcaB06g26256' => 'bca', 'BcaB06g26257' => 'bca', 'BcaB06g28379' => 'bca', 'BcaC02g11159' => 'bca', 'BcaC03g13258' => 'bca', 'BcaC03g13259' => 'bca', 'BcaC05g24456' => 'bca', 'BcaC05g24457' => 'bca', 'BcaC07g36922' => 'bca', 'BcaC07g36923' => 'bca', 'BcaC07g42050' => 'bca', 'BcaC07g42176' => 'bca', 'BcaC07g42195' => 'bca', 'BcaC07g42196' => 'bca', 'BcaNung06674' => 'bca', 'BolC2t06351H' => 'bol', 'BolC2t06352H' => 'bol', 'BolC3t12993H' => 'bol', 'BolC4t23525H' => 'bol', 'BolC4t27475H' => 'bol', 'BolC5t29025H' => 'bol', 'BolC5t29026H' => 'bol', 'BolC8t46898H' => 'bol', 'BolC8t46899H' => 'bol', 'BolC8t52630H' => 'bol', 'BolC8t52765H' => 'bol', 'BolC9t53824H' => 'bol', 'BraA03t09760Z' => 'bra', 'BraA03t10990Z' => 'bra', 'BraA05t20413Z' => 'bra', 'BraA08t35602Z' => 'bra', 'BraA09t36458Z' => 'bra', 'BraA09t42018Z' => 'bra', 'BraA09t42129Z' => 'bra', 'BraA10t42536Z' => 'bra', 'BraA10t42537Z' => 'bra', 'C01p10690' => 'bna', 'C02p03890' => 'bna', 'C02p03900' => 'bna', 'C03p04620' => 'bna', 'C04p19870' => 'bna', 'C04p59670' => 'bna', 'C05p02460' => 'bna', 'C05p02470' => 'bna', 'C08p00980' => 'bna', 'C08p00990' => 'bna', 'C08p51030' => 'bna', 'C08p52360' => 'bna', 'C09p09120' => 'bna', 'CAN.G19.15' => 'can', 'CAN.G251.10' => 'can', 'CAN.G251.9' => 'can', 'CAN.G398.24' => 'can', 'CAN.G410.32' => 'can', 'CAN.G881.2' => 'can', 'CANSAT01G3025' => 'cansat', 'CANSAT78G1211' => 'cansat', 'CANSAT78G1218' => 'cansat', 'CANSAT78G1521' => 'cansat', 'CANSAT78G1670' => 'cansat', 'CARHR003600' => 'chi', 'CARHR003610' => 'chi', 'CARHR006290' => 'chi', 'CARHR006430' => 'chi', 'CARHR124110' => 'chi', 'CARHR203870' => 'chi', 'CARHR203880' => 'chi', 'CARHR203890' => 'chi', 'CARHR276880' => 'chi', 'Carub.0001s0346' => 'cru', 'Carub.0001s0347' => 'cru', 'Carub.0001s0607' => 'cru', 'Carub.0003s2768' => 'cru', 'Carub.0003s2769' => 'cru', 'Carub.0004s1178' => 'cru', 'Carub.0006s0806' => 'cru', 'Carub.0006s0807' => 'cru', 'Carub.0006s0808' => 'cru', 'Carub.0008s0501' => 'cru', 'Carub.0008s2379' => 'cru', 'Ca_08655_v3' => 'car', 'Ca_08922_v3' => 'car', 'Ca_08923_v3' => 'car', 'Ca_09119_v3' => 'car', 'Ca_09703_v3' => 'car', 'Ca_09705_v3' => 'car', 'Ca_09835_v3' => 'car', 'Ca_26403_v3' => 'car', 'Ca_30719_v3' => 'car', 'CBR_g17958' => 'cbr', 'CBR_g40516' => 'cbr', 'Cc00_g05350' => 'ccan', 'Cc01_g18690' => 'ccan', 'Cc03_g04830' => 'ccan', 'Cc03_g04850' => 'ccan', 'CDE02G4469' => 'cde', 'CDE06G0883' => 'cde', 'CDE06G1295' => 'cde', 'CDE06G1390' => 'cde', 'CDE07G0584' => 'cde', 'CDE07G1084' => 'cde', 'CDE08G1259' => 'cde', 'Cfa002341' => 'cfa', 'Cfa024337' => 'cfa', 'Ciclev10004749m.g' => 'ccl', 'Ciclev10006127m.g' => 'ccl', 'Ciclev10019720m.g' => 'ccl', 'Ciclev10022652m.g' => 'ccl', 'CiPaw.01G190400' => 'cil', 'CiPaw.01G190500' => 'cil', 'CiPaw.02G116400' => 'cil', 'CiPaw.02G116500' => 'cil', 'CiPaw.04G183000' => 'cil', 'CiPaw.04G183300' => 'cil', 'ClCG05G004610' => 'cla', 'ClCG05G004620' => 'cla', 'ClCG06G006730' => 'cla', 'ClCG06G006740' => 'cla', 'ClCG11G003690' => 'cla', 'COL.COLO4_08276' => 'col', 'COL.COLO4_08277' => 'col', 'COL.COLO4_15787' => 'col', 'COL.COLO4_15789' => 'col', 'Cpa.g.c44815' => 'cpa', 'Cpa.g.sc52.144' => 'cpa', 'Cpa.g.sc58.46' => 'cpa', 'Cpa.g.sc58.47' => 'cpa', 'Cre08.g360900' => 'cre', 'CsaV3_2G013030' => 'csa', 'CsaV3_2G013050' => 'csa', 'CsaV3_2G015620' => 'csa', 'CsaV3_3G012590' => 'csa', 'CsaV3_3G012600' => 'csa', 'CSS0001641' => 'camsi', 'CSS0008310' => 'camsi', 'CSS0013011' => 'camsi', 'CSS0017147' => 'camsi', 'CSS0022970' => 'camsi', 'CSS0025655' => 'camsi', 'CSS0028665' => 'camsi', 'CSS0029117' => 'camsi', 'CSS0032024' => 'camsi', 'CSS0039681' => 'camsi', 'CSS0046516' => 'camsi', 'CSS0050307' => 'camsi', 'DCAR_005871' => 'dca', 'DCAR_007342' => 'dca', 'DCAR_024228' => 'dca', 'DCAR_027277' => 'dca', 'DCAR_030718' => 'dca', 'Dinv20287' => 'din', 'Dinv22461' => 'din', 'Dinv22464' => 'din', 'Dinv29912' => 'din', 'Dinv29913' => 'din', 'Dinv34580' => 'din', 'Dinv34582' => 'din', 'Dinv44632' => 'din', 'Duzib052G0266' => 'dzi', 'Duzib133G0907' => 'dzi', 'Duzib133G1034' => 'dzi', 'Duzib138G0207' => 'dzi', 'Duzib138G0491' => 'dzi', 'Duzib151G0812' => 'dzi', 'Duzib151G1166' => 'dzi', 'Duzib168G0192' => 'dzi', 'Duzib211G0077' => 'dzi', 'Duzib212G0429' => 'dzi', 'Duzib212G0472' => 'dzi', 'ECA233G2617' => 'eca', 'ECA236G4188' => 'eca', 'ECA240G0936' => 'eca', 'ECA240G1129' => 'eca', 'ECA247G0623' => 'eca', 'EL10Ac5g10451' => 'bvu', 'EL10Ac5g10453' => 'bvu', 'EL10Ac5g10894' => 'bvu', 'Eucgr.H00192' => 'egr', 'Eucgr.H00193' => 'egr', 'Eucgr.H00194' => 'egr', 'Eucgr.J01562' => 'egr', 'Eucgr.K03301' => 'egr', 'FAN02G0632' => 'fan', 'FAN05G5378' => 'fan', 'FAN09G3247' => 'fan', 'FAN12G0435' => 'fan', 'FAN12G2426' => 'fan', 'FAN14G1707' => 'fan', 'FAN14G4725' => 'fan', 'FAN15G2071' => 'fan', 'FAN17G3065' => 'fan', 'FAN19G1376' => 'fan', 'FAN20G0354' => 'fan', 'FAN20G2429' => 'fan', 'FAN20G2658' => 'fan', 'FAN24G2343' => 'fan', 'FAN27G2362' => 'fan', 'FAN28G1765' => 'fan', 'FvH4_1g16020' => 'fve', 'FvH4_2g04890' => 'fve', 'FvH4_2g22270' => 'fve', 'FvH4_4g02630' => 'fve', 'FvH4_4g02640' => 'fve', 'FvH4_6g02650' => 'fve', 'Glyma.02G140600' => 'gma', 'Glyma.03G159900' => 'gma', 'Glyma.05G234800' => 'gma', 'Glyma.07G269600' => 'gma', 'Glyma.08G042300' => 'gma', 'Glyma.10G033500' => 'gma', 'Glyma.10G185200' => 'gma', 'Glyma.17G004300' => 'gma', 'Glyma.19G161900' => 'gma', 'Glyma.20G205100' => 'gma', 'Glyma.20G205200' => 'gma', 'Gohir.A01G139101' => 'ghi', 'Gohir.A02G035600' => 'ghi', 'Gohir.A02G117901' => 'ghi', 'Gohir.A07G210100' => 'ghi', 'Gohir.A07G210200' => 'ghi', 'Gohir.A08G061100' => 'ghi', 'Gohir.A09G223000' => 'ghi', 'Gohir.A09G223100' => 'ghi', 'Gohir.A10G113900' => 'ghi', 'Gohir.A10G114000' => 'ghi', 'Gohir.D02G042300' => 'ghi', 'Gohir.D07G216100' => 'ghi', 'Gohir.D07G216200' => 'ghi', 'Gohir.D08G070400' => 'ghi', 'Gohir.D09G225000' => 'ghi', 'Gohir.D09G225100' => 'ghi', 'Gohir.D10G152300' => 'ghi', 'Gohir.D10G153200' => 'ghi', 'Gohir.D11G133701' => 'ghi', 'Gorai.004G074100' => 'gra', 'Gorai.005G046800' => 'gra', 'Gorai.006G246500' => 'gra', 'Gorai.006G246600' => 'gra', 'Gorai.007G142900' => 'gra', 'Gorai.011G171000' => 'gra', 'Gorai.011G171100' => 'gra', 'Gorai.013G104300' => 'gra', 'Gorai.013G104400' => 'gra', 'GSVIVG01000754001' => 'vvi', 'GSVIVG01000756001' => 'vvi', 'GSVIVG01010903001' => 'vvi', 'GSVIVG01017623001' => 'vvi', 'GSVIVG01018113001' => 'vvi', 'GSVIVG01018116001' => 'vvi', 'GSVIVG01018118001' => 'vvi', 'HanXRQChr03g0076211' => 'han', 'HanXRQChr03g0092431' => 'han', 'HanXRQChr03g0092441' => 'han', 'HanXRQChr03g0092591' => 'han', 'HanXRQChr03g0092671' => 'han', 'HanXRQChr03g0092681' => 'han', 'HanXRQChr03g0092691' => 'han', 'HanXRQChr03g0092701' => 'han', 'HanXRQChr03g0092721' => 'han', 'HanXRQChr03g0092731' => 'han', 'HanXRQChr04g0113681' => 'han', 'HanXRQChr10g0281371' => 'han', 'HanXRQChr11g0337141' => 'han', 'HanXRQChr13g0424521' => 'han', 'HanXRQChr13g0424531' => 'han', 'HanXRQChr13g0424541' => 'han', 'HanXRQChr16g0498221' => 'han', 'Haze_04377' => 'cav', 'Haze_11298' => 'cav', 'Haze_24547' => 'cav', 'Haze_24550' => 'cav', 'Haze_26587' => 'cav', 'Hma1.2p1_0650F.1_g195410' => 'hma', 'Hma1.2p1_0893F.1_g233470' => 'hma', 'HPP92_006508' => 'vpl', 'HPP92_024780' => 'vpl', 'Hund02688' => 'sun', 'Hund09380' => 'sun', 'Hund09381' => 'sun', 'Hund09832' => 'sun', 'Hund09833' => 'sun', 'Hund11351' => 'sun', 'Hund11513' => 'sun', 'Lalb_Chr06g0162591' => 'lal', 'Lalb_Chr06g0162601' => 'lal', 'Lalb_Chr06g0169321' => 'lal', 'Lalb_Chr09g0330951' => 'lal', 'Lalb_Chr16g0387631' => 'lal', 'Lalb_Chr21g0306241' => 'lal', 'Lalb_Chr25g0290051' => 'lal', 'Lalb_Chr25g0290061' => 'lal', 'Lalb_Chr25g0290071' => 'lal', 'Lj1g0003876' => 'lja', 'Lj1P1207T36' => 'lonja', 'Lj2C1156G12' => 'lonja', 'Lj3A793G39' => 'lonja', 'Lj3C580G2' => 'lonja', 'Lj3C780G2' => 'lonja', 'Lj3C780T4' => 'lonja', 'Lj3C793G9' => 'lonja', 'Lj4g0012960' => 'lja', 'Lj5g0021252' => 'lja', 'Lj5g0021484' => 'lja', 'Lj5g0024528' => 'lja', 'Lj6A399T12' => 'lonja', 'Lj6A656G65' => 'lonja', 'Lsat_1_v5_gn_3_125500' => 'lsa', 'Lsat_1_v5_gn_3_125540' => 'lsa', 'Lsat_1_v5_gn_5_72701' => 'lsa', 'Lsat_1_v5_gn_8_91560' => 'lsa', 'Lsat_1_v5_gn_9_9640' => 'lsa', 'Manes.01G200600' => 'mes', 'Manes.01G200700' => 'mes', 'Manes.03G168900' => 'mes', 'Manes.03G169000' => 'mes', 'Manes.05G085801' => 'mes', 'Manes.05G086200' => 'mes', 'Manes.15G036700' => 'mes', 'Manes.15G036900' => 'mes', 'Mapoly0004s0172' => 'mpo', 'Mapoly0023s0001' => 'mpo', 'Mapoly0142s0012' => 'mpo', 'MBI01_g32854_MAGBIO' => 'mbi', 'MBI11_g24427_MAGBIO' => 'mbi', 'MBI11_g47319_MAGBIO' => 'mbi', 'MCO01G433' => 'mco', 'MD00G1187800' => 'mdo', 'MD04G1226500' => 'mdo', 'MD05G1203900' => 'mdo', 'MD10G1191100' => 'mdo', 'MD12G1243500' => 'mdo', 'MD13G1207000' => 'mdo', 'MD13G1207100' => 'mdo', 'MD16G1208600' => 'mdo', 'Medtr1g050352' => 'mtr', 'Medtr1g070385' => 'mtr', 'Medtr1g070450' => 'mtr', 'Medtr1g075200' => 'mtr', 'Medtr1g075250' => 'mtr', 'Medtr1g075260' => 'mtr', 'Medtr1g475250' => 'mtr', 'Medtr4g075450' => 'mtr', 'Medtr7g096300' => 'mtr', 'Medtr8g105110' => 'mtr', 'MELO3C006470.2' => 'cme', 'MELO3C006471.2' => 'cme', 'MELO3C020772.2' => 'cme', 'MELO3C026780.2' => 'cme', 'MELO3C026781.2' => 'cme', 'Migut.D00390' => 'egut', 'Migut.G00435' => 'egut', 'Migut.G00436' => 'egut', 'Migut.G00718' => 'egut', 'MSTRG.21891' => 'ama', 'MSTRG.26910' => 'ama', 'MSTRG.4099' => 'ama', 'MSTRG.9925' => 'ama', 'Nitab4.5_0000165g0010' => 'nta', 'Nitab4.5_0000209g0180' => 'nta', 'Nitab4.5_0000244g0440' => 'nta', 'Nitab4.5_0000525g0220' => 'nta', 'Nitab4.5_0001597g0020' => 'nta', 'Nitab4.5_0001878g0040' => 'nta', 'Nitab4.5_0001878g0060' => 'nta', 'Nitab4.5_0002838g0100' => 'nta', 'Nitab4.5_0002838g0120' => 'nta', 'Nitab4.5_0004798g0030' => 'nta', 'Nitab4.5_0005420g0010' => 'nta', 'Nitab4.5_0005507g0010' => 'nta', 'Nitab4.5_0005574g0020' => 'nta', 'Nitab4.5_0005838g0010' => 'nta', 'Nitab4.5_0010580g0020' => 'nta', 'Nn1g02599' => 'nnu', 'Nn1g02608' => 'nnu', 'Nn3g17742' => 'nnu', 'Nn3g19534' => 'nnu', 'Nn3g19535' => 'nnu', 'Oeu008790.1' => 'oeu', 'Oeu008792.1' => 'oeu', 'Oeu032590.1' => 'oeu', 'Oeu035349.1' => 'oeu', 'Oeu049791.1' => 'oeu', 'Os01g0774500' => 'osa', 'Os03g0628800' => 'osa', 'Os03g0798600' => 'osa', 'Os05g0508800' => 'osa', 'Peaxi162Scf00036g02018' => 'pax', 'Peaxi162Scf00578g00032' => 'pax', 'Peaxi162Scf00578g00317' => 'pax', 'Peaxi162Scf00785g00114' => 'pax', 'Peaxi162Scf00813g00119' => 'pax', 'Peaxi162Scf00906g00227' => 'pax', 'PGR004G0875' => 'pgr', 'PGR004G2424' => 'pgr', 'PGR031G1239' => 'pgr', 'PGR031G2474' => 'pgr', 'PGR044G0423' => 'pgr', 'PGSC0003DMG400001128' => 'stu', 'PGSC0003DMG400007336' => 'stu', 'PGSC0003DMG400016318' => 'stu', 'PGSC0003DMG400016319' => 'stu', 'PGSC0003DMG400018074' => 'stu', 'Phvul.001G157700' => 'pvu', 'Phvul.002G148550' => 'pvu', 'Phvul.002G320200' => 'pvu', 'Phvul.003G089200' => 'pvu', 'Phvul.007G126000' => 'pvu', 'Phvul.007G126100' => 'pvu', 'Phvul.007G178000' => 'pvu', 'Phvul.007G178200' => 'pvu', 'Potri.002G043000' => 'ptr', 'Potri.002G043200' => 'ptr', 'Potri.003G123750' => 'ptr', 'Potri.005G055401' => 'ptr', 'Potri.005G219700' => 'ptr', 'Potri.005G220000' => 'ptr', 'Potri.008G161901' => 'ptr', 'Potri.008G162000' => 'ptr', 'Potri.008G162400' => 'ptr', 'Potri.010G076900' => 'ptr', 'Pp3c12_9180' => 'ppa', 'Pp3c13_19770' => 'ppa', 'Pp3c14_22950' => 'ppa', 'Pp3c16_12160' => 'ppa', 'Pp3c27_7820' => 'ppa', 'Pp3c2_3490' => 'ppa', 'Pp3c3_23700' => 'ppa', 'Pp3c3_36520' => 'ppa', 'Pp3c4_15250' => 'ppa', 'PRCOL_00007002' => 'pco', 'Prupe.1G030600' => 'ppe', 'Prupe.1G030700' => 'ppe', 'Prupe.6G345200' => 'ppe', 'Prupe.8G230300' => 'ppe', 'Prupe.8G230500' => 'ppe', 'Psat3g059600' => 'psa', 'Psat5g200920' => 'psa', 'Psat6g056440' => 'psa', 'Psat6g057360' => 'psa', 'Psat6g134120' => 'psa', 'Psat6g134160' => 'psa', 'Psat7g008640' => 'psa', 'Psat7g185240' => 'psa', 'PSO017G1330' => 'pso', 'PSO063G6097' => 'pso', 'PSO170G0835' => 'pso', 'PSO170G2499' => 'pso', 'PSO210G5058' => 'pso', 'PSO210G6154' => 'pso', 'PSO585G0031' => 'pso', 'PSO832G0264' => 'pso', 'PSO832G4288' => 'pso', 'QL03p027355' => 'qlo', 'QL03p027430' => 'qlo', 'QL04p081380' => 'qlo', 'QL06p015642' => 'qlo', 'QL06p015650' => 'qlo', 'QL06p015686' => 'qlo', 'QL12p042927' => 'qlo', 'QL93p1863_0035' => 'qlo', 'RcHm_v2.0_Chr3g0450581' => 'rch', 'RcHm_v2.0_Chr4g0390371' => 'rch', 'RcHm_v2.0_Chr4g0390381' => 'rch', 'RcHm_v2.0_Chr4g0390491' => 'rch', 'RcHm_v2.0_Chr4g0390501' => 'rch', 'RcHm_v2.0_Chr6g0289231' => 'rch', 'Rhsim04G0190400' => 'rsi', 'Rhsim04G0190500' => 'rsi', 'Rhsim04G0190600' => 'rsi', 'Rhsim13G0031400' => 'rsi', 'Rhsim13G0165600' => 'rsi', 'RhsimUnG0114600' => 'rsi', 'RhsimUnG0114700' => 'rsi', 'Sabra02G0034800' => 'sbr', 'Sabra02G0035100' => 'sbr', 'Sabra05G0168600' => 'sbr', 'Sabra05G0168800' => 'sbr', 'Sabra08G0123700' => 'sbr', 'Sabra10G0031900' => 'sbr', 'Sabra13G0039000' => 'sbr', 'SalBow2G0782' => 'sbo', 'SalBow2G1403' => 'sbo', 'SalBow4G0074' => 'sbo', 'SalBow4G2635' => 'sbo', 'SalBow5G3010' => 'sbo', 'Sc05g0000870' => 'sci', 'Sc05g0000890' => 'sci', 'Sc13g0005000' => 'sci', 'Sc13g0005030' => 'sci', 'Sc19g0003790' => 'sci', 'Sc19g0003800' => 'sci', 'Sed0003467' => 'sed', 'Sed0009355' => 'sed', 'Sed0009894' => 'sed', 'Sed0011972' => 'sed', 'Sed0021483' => 'sed', 'Sed0021750' => 'sed', 'Sed0026279' => 'sed', 'SEGI_05312' => 'sgi', 'SEGI_10112' => 'sgi', 'SEGI_15835' => 'sgi', 'SEGI_30386' => 'sgi', 'SEGI_34122' => 'sgi', 'SEGI_35063' => 'sgi', 'SGA_v2.0_scaffold101G29794' => 'sas', 'SGA_v2.0_scaffold1G00573' => 'sas', 'SGA_v2.0_scaffold79G25637' => 'sas', 'SGA_v2.0_scaffold88G27283' => 'sas', 'SGA_v2.0_scaffold88G27285' => 'sas', 'SGA_v2.0_scaffold88G27331' => 'sas', 'SHI09937' => 'shi', 'SMO119G0302' => 'smo', 'SMO137G0231' => 'smo', 'SMO367G1151' => 'smo', 'Solyc02g082000.3' => 'sly', 'Solyc06g031670.3' => 'sly', 'Solyc06g053810.3' => 'sly', 'Solyc07g025457.1' => 'sly', 'Solyc08g059740.1' => 'sly', 'Solyc08g059750.3' => 'sly', 'Solyc09g083370.3' => 'sly', 'Solyc12g038950.3' => 'sly', 'Sopen02g026630' => 'spe', 'Sopen06g018930' => 'spe', 'Sopen06g018940' => 'spe', 'Sopen08g009460' => 'spe', 'Sopen09g032290' => 'spe', 'Sp1g03080' => 'spa', 'Sp1g03090' => 'spa', 'Sp1g05480' => 'spa', 'Sp2g07860' => 'spa', 'Sp2g08430' => 'spa', 'Sp2g08440' => 'spa', 'Sp2g26200' => 'spa', 'Sp4g13170' => 'spa', 'Sp6g33840' => 'spa', 'SpUn1204_0010' => 'spa', 'TAR365G0908' => 'tar', 'TAR381G1270' => 'tar', 'TAR381G1651' => 'tar', 'TAR625G1131' => 'tar', 'TAR633G0962' => 'tar', 'TAR633G1729' => 'tar', 'TAR633G1864' => 'tar', 'TAR636G0221' => 'tar', 'TAR636G0314' => 'tar', 'TAR636G3202' => 'tar', 'THA.LOC104800805' => 'tha', 'THA.LOC104801096' => 'tha', 'THA.LOC104801555' => 'tha', 'THA.LOC104808491' => 'tha', 'THA.LOC104808595' => 'tha', 'THA.LOC104815985' => 'tha', 'THA.LOC104822250' => 'tha', 'THA.LOC104826071' => 'tha', 'Thecc.01G265200' => 'tca', 'Thecc.01G265300' => 'tca', 'Thecc.01G265700' => 'tca', 'Thecc.03G109100' => 'tca', 'Thecc.04G245900' => 'tca', 'Thecc.04G246000' => 'tca', 'Thhalv10003334m.g' => 'esa', 'Thhalv10005508m.g' => 'esa', 'Thhalv10005643m.g' => 'esa', 'Thhalv10007316m.g' => 'esa', 'Thhalv10009006m.g' => 'esa', 'Thhalv10009309m.g' => 'esa', 'Thhalv10014917m.g' => 'esa', 'Thhalv10014919m.g' => 'esa', 'Thhalv10015393m.g' => 'esa', 'Thhalv10016515m.g' => 'esa', 'Thhalv10029242m.g' => 'esa', 'TPR.G16654' => 'tpr', 'TPR.G20589' => 'tpr', 'TPR.G23029' => 'tpr', 'TPR.G27731' => 'tpr', 'TPR.G28889' => 'tpr', 'TPR.G28899' => 'tpr', 'TPR.G30846' => 'tpr', 'TPR.G5452' => 'tpr', 'TPR.G5713' => 'tpr', 'TPR.G9046' => 'tpr', 'TPR.G9061' => 'tpr', 'TWI09G1075' => 'twi', 'TWI12G0806' => 'twi', 'TWI18G0108' => 'twi', 'TWI53G1361' => 'twi', 'TWI73G0185' => 'twi', 'TWI73G0427' => 'twi', 'unitig_37.g12001' => 'ugi', 'unitig_747.g21660' => 'ugi', 'unitig_748.g7232' => 'ugi', 'unitig_748.g7315' => 'ugi', 'unitig_85.g27262' => 'ugi', 'unitig_92.g28220' => 'ugi', 'vmacro02632' => 'vma', 'vmacro08410' => 'vma', 'vmacro08411' => 'vma', 'vmacro15407' => 'vma', 'VMungo0251G3619' => 'vmu', 'VMungo0720G1204' => 'vmu', 'VMungo0720G1918' => 'vmu', 'VMungo0720G2387' => 'vmu', 'VMungo0720G2961' => 'vmu', 'VMungo1215G2154' => 'vmu', 'VMungo1383G2411' => 'vmu', 'Zm00001eb051130' => 'zma', 'Zm00001eb116830' => 'zma', 'Zm00001eb116850' => 'zma', 'Zm00001eb151740' => 'zma', 'Zm00001eb292360' => 'zma', 'Zm00001eb301640' => 'zma' ) $gf_id = 'HOM05D000856' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000856' ) $data_identifier = 'HOM05D000856' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 13, 'ath' => (int) 10, 'atr' => (int) 1, 'acertr' => (int) 8, 'cqu' => (int) 6, 'bca' => (int) 21, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 11, 'car' => (int) 9, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 8, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 5, 'fan' => (int) 16, 'fve' => (int) 6, 'gma' => (int) 11, 'ghi' => (int) 19, 'gra' => (int) 9, 'vvi' => (int) 7, 'han' => (int) 17, 'cav' => (int) 5, 'hma' => (int) 2, 'vpl' => (int) 2, 'sun' => (int) 7, 'lal' => (int) 9, 'lja' => (int) 5, 'lonja' => (int) 9, 'lsa' => (int) 5, 'mes' => (int) 8, 'mpo' => (int) 3, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 10, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 15, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 9, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 9, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 6, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 5, 'spa' => (int) 10, 'tar' => (int) 10, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 11, 'tpr' => (int) 11, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 4, 'vmu' => (int) 7, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb301640' $species_info = array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ) $local_species = 'rch' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000856', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p00010' => 'bna', 'A03p04160' => 'bna', 'A03p17160' => 'bna', 'A04p23370' => 'bna', 'A05p14860' => 'bna', 'A08p37020' => 'bna', 'A09p08050' => 'bna', 'A09p66800' => 'bna', 'A09p67940' => 'bna', 'A10p02680' => 'bna', 'A10p05320' => 'bna', 'Aa31LG1G20560' => 'aar', 'Aa31LG1G20610' => 'aar', 'Aa31LG1G7810' => 'aar', 'Aa31LG5G3590' => 'aar', 'Aa31LG5G6140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3819' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4683' => 'aag', 'Actinidia04480' => 'ach', 'Actinidia05466' => 'ach', 'Actinidia08445' => 'ach', 'Actinidia21170' => 'ach', 'Actinidia24812' => 'ach', 'Actinidia24951' => 'ach', 'Actinidia40088' => 'ach', 'Ah.02g111660' => 'amhyb', 'Ah.11g048900' => 'amhyb', 'Ah.11g049910' => 'amhyb', 'AL1G13870' => 'aly', 'AL1G13880' => 'aly', 'AL1G16760' => 'aly', 'AL390U10020' => 'aly', 'AL4G25520' => 'aly', 'AL6G19890' => 'aly', 'AL6G19900' => 'aly', 'AL6G19910' => 'aly', 'AL8G40100' => 'aly', 'Aqoxy2G03562' => 'aox', 'Aqoxy5G00316' => 'aox', 'Aqoxy5G00926' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1628KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1H403S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2FU6SJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.882I6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8YRY2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YN1SN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AF70II' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZA8L1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F916KL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHRD8H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KTZ8QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S22EMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8M29T' => 'arhy', 'AT1G04270' => 'ath', 'AT1G04280' => 'ath', 'AT1G06750' => 'ath', 'AT1G33850' => 'ath', 'AT2G30630' => 'ath', 'AT5G09490' => 'ath', 'AT5G09500' => 'ath', 'AT5G09510' => 'ath', 'AT5G43640' => 'ath', 'AT5G63070' => 'ath', 'ATR0605G315' => 'atr', 'Atru.chr11.175' => 'acertr', 'Atru.chr11.653' => 'acertr', 'Atru.chr3.1616' => 'acertr', 'Atru.chr4.2230' => 'acertr', 'Atru.chr4.2232' => 'acertr', 'Atru.chr5.1598' => 'acertr', 'Atru.chr5.1600' => 'acertr', 'Atru.chr5.2188' => 'acertr', 'AUR62008326' => 'cqu', 'AUR62011922' => 'cqu', 'AUR62011924' => 'cqu', 'AUR62021771' => 'cqu', 'AUR62032237' => 'cqu', 'AUR62032240' => 'cqu', 'BcaB01g05572' => 'bca', 'BcaB02g10337' => 'bca', 'BcaB04g19944' => 'bca', 'BcaB05g21548' => 'bca', 'BcaB05g21549' => 'bca', 'BcaB05g23227' => 'bca', 'BcaB06g26256' => 'bca', 'BcaB06g26257' => 'bca', 'BcaB06g28379' => 'bca', 'BcaC02g11159' => 'bca', 'BcaC03g13258' => 'bca', 'BcaC03g13259' => 'bca', 'BcaC05g24456' => 'bca', 'BcaC05g24457' => 'bca', 'BcaC07g36922' => 'bca', 'BcaC07g36923' => 'bca', 'BcaC07g42050' => 'bca', 'BcaC07g42176' => 'bca', 'BcaC07g42195' => 'bca', 'BcaC07g42196' => 'bca', 'BcaNung06674' => 'bca', 'BolC2t06351H' => 'bol', 'BolC2t06352H' => 'bol', 'BolC3t12993H' => 'bol', 'BolC4t23525H' => 'bol', 'BolC4t27475H' => 'bol', 'BolC5t29025H' => 'bol', 'BolC5t29026H' => 'bol', 'BolC8t46898H' => 'bol', 'BolC8t46899H' => 'bol', 'BolC8t52630H' => 'bol', 'BolC8t52765H' => 'bol', 'BolC9t53824H' => 'bol', 'BraA03t09760Z' => 'bra', 'BraA03t10990Z' => 'bra', 'BraA05t20413Z' => 'bra', 'BraA08t35602Z' => 'bra', 'BraA09t36458Z' => 'bra', 'BraA09t42018Z' => 'bra', 'BraA09t42129Z' => 'bra', 'BraA10t42536Z' => 'bra', 'BraA10t42537Z' => 'bra', 'C01p10690' => 'bna', 'C02p03890' => 'bna', 'C02p03900' => 'bna', 'C03p04620' => 'bna', 'C04p19870' => 'bna', 'C04p59670' => 'bna', 'C05p02460' => 'bna', 'C05p02470' => 'bna', 'C08p00980' => 'bna', 'C08p00990' => 'bna', 'C08p51030' => 'bna', 'C08p52360' => 'bna', 'C09p09120' => 'bna', 'CAN.G19.15' => 'can', 'CAN.G251.10' => 'can', 'CAN.G251.9' => 'can', 'CAN.G398.24' => 'can', 'CAN.G410.32' => 'can', 'CAN.G881.2' => 'can', 'CANSAT01G3025' => 'cansat', 'CANSAT78G1211' => 'cansat', 'CANSAT78G1218' => 'cansat', 'CANSAT78G1521' => 'cansat', 'CANSAT78G1670' => 'cansat', 'CARHR003600' => 'chi', 'CARHR003610' => 'chi', 'CARHR006290' => 'chi', 'CARHR006430' => 'chi', 'CARHR124110' => 'chi', 'CARHR203870' => 'chi', 'CARHR203880' => 'chi', 'CARHR203890' => 'chi', 'CARHR276880' => 'chi', 'Carub.0001s0346' => 'cru', 'Carub.0001s0347' => 'cru', 'Carub.0001s0607' => 'cru', 'Carub.0003s2768' => 'cru', 'Carub.0003s2769' => 'cru', 'Carub.0004s1178' => 'cru', 'Carub.0006s0806' => 'cru', 'Carub.0006s0807' => 'cru', 'Carub.0006s0808' => 'cru', 'Carub.0008s0501' => 'cru', 'Carub.0008s2379' => 'cru', 'Ca_08655_v3' => 'car', 'Ca_08922_v3' => 'car', 'Ca_08923_v3' => 'car', 'Ca_09119_v3' => 'car', 'Ca_09703_v3' => 'car', 'Ca_09705_v3' => 'car', 'Ca_09835_v3' => 'car', 'Ca_26403_v3' => 'car', 'Ca_30719_v3' => 'car', 'CBR_g17958' => 'cbr', 'CBR_g40516' => 'cbr', 'Cc00_g05350' => 'ccan', 'Cc01_g18690' => 'ccan', 'Cc03_g04830' => 'ccan', 'Cc03_g04850' => 'ccan', 'CDE02G4469' => 'cde', 'CDE06G0883' => 'cde', 'CDE06G1295' => 'cde', 'CDE06G1390' => 'cde', 'CDE07G0584' => 'cde', 'CDE07G1084' => 'cde', 'CDE08G1259' => 'cde', 'Cfa002341' => 'cfa', 'Cfa024337' => 'cfa', 'Ciclev10004749m.g' => 'ccl', 'Ciclev10006127m.g' => 'ccl', 'Ciclev10019720m.g' => 'ccl', 'Ciclev10022652m.g' => 'ccl', 'CiPaw.01G190400' => 'cil', 'CiPaw.01G190500' => 'cil', 'CiPaw.02G116400' => 'cil', 'CiPaw.02G116500' => 'cil', 'CiPaw.04G183000' => 'cil', 'CiPaw.04G183300' => 'cil', 'ClCG05G004610' => 'cla', 'ClCG05G004620' => 'cla', 'ClCG06G006730' => 'cla', 'ClCG06G006740' => 'cla', 'ClCG11G003690' => 'cla', 'COL.COLO4_08276' => 'col', 'COL.COLO4_08277' => 'col', 'COL.COLO4_15787' => 'col', 'COL.COLO4_15789' => 'col', 'Cpa.g.c44815' => 'cpa', 'Cpa.g.sc52.144' => 'cpa', 'Cpa.g.sc58.46' => 'cpa', 'Cpa.g.sc58.47' => 'cpa', 'Cre08.g360900' => 'cre', 'CsaV3_2G013030' => 'csa', 'CsaV3_2G013050' => 'csa', 'CsaV3_2G015620' => 'csa', 'CsaV3_3G012590' => 'csa', 'CsaV3_3G012600' => 'csa', 'CSS0001641' => 'camsi', 'CSS0008310' => 'camsi', 'CSS0013011' => 'camsi', 'CSS0017147' => 'camsi', 'CSS0022970' => 'camsi', 'CSS0025655' => 'camsi', 'CSS0028665' => 'camsi', 'CSS0029117' => 'camsi', 'CSS0032024' => 'camsi', 'CSS0039681' => 'camsi', 'CSS0046516' => 'camsi', 'CSS0050307' => 'camsi', 'DCAR_005871' => 'dca', 'DCAR_007342' => 'dca', 'DCAR_024228' => 'dca', 'DCAR_027277' => 'dca', 'DCAR_030718' => 'dca', 'Dinv20287' => 'din', 'Dinv22461' => 'din', 'Dinv22464' => 'din', 'Dinv29912' => 'din', 'Dinv29913' => 'din', 'Dinv34580' => 'din', 'Dinv34582' => 'din', 'Dinv44632' => 'din', 'Duzib052G0266' => 'dzi', 'Duzib133G0907' => 'dzi', 'Duzib133G1034' => 'dzi', 'Duzib138G0207' => 'dzi', 'Duzib138G0491' => 'dzi', 'Duzib151G0812' => 'dzi', 'Duzib151G1166' => 'dzi', 'Duzib168G0192' => 'dzi', 'Duzib211G0077' => 'dzi', 'Duzib212G0429' => 'dzi', 'Duzib212G0472' => 'dzi', 'ECA233G2617' => 'eca', 'ECA236G4188' => 'eca', 'ECA240G0936' => 'eca', 'ECA240G1129' => 'eca', 'ECA247G0623' => 'eca', 'EL10Ac5g10451' => 'bvu', 'EL10Ac5g10453' => 'bvu', 'EL10Ac5g10894' => 'bvu', 'Eucgr.H00192' => 'egr', 'Eucgr.H00193' => 'egr', 'Eucgr.H00194' => 'egr', 'Eucgr.J01562' => 'egr', 'Eucgr.K03301' => 'egr', 'FAN02G0632' => 'fan', 'FAN05G5378' => 'fan', 'FAN09G3247' => 'fan', 'FAN12G0435' => 'fan', 'FAN12G2426' => 'fan', 'FAN14G1707' => 'fan', 'FAN14G4725' => 'fan', 'FAN15G2071' => 'fan', 'FAN17G3065' => 'fan', 'FAN19G1376' => 'fan', 'FAN20G0354' => 'fan', 'FAN20G2429' => 'fan', 'FAN20G2658' => 'fan', 'FAN24G2343' => 'fan', 'FAN27G2362' => 'fan', 'FAN28G1765' => 'fan', 'FvH4_1g16020' => 'fve', 'FvH4_2g04890' => 'fve', 'FvH4_2g22270' => 'fve', 'FvH4_4g02630' => 'fve', 'FvH4_4g02640' => 'fve', 'FvH4_6g02650' => 'fve', 'Glyma.02G140600' => 'gma', 'Glyma.03G159900' => 'gma', 'Glyma.05G234800' => 'gma', 'Glyma.07G269600' => 'gma', 'Glyma.08G042300' => 'gma', 'Glyma.10G033500' => 'gma', 'Glyma.10G185200' => 'gma', 'Glyma.17G004300' => 'gma', 'Glyma.19G161900' => 'gma', 'Glyma.20G205100' => 'gma', 'Glyma.20G205200' => 'gma', 'Gohir.A01G139101' => 'ghi', 'Gohir.A02G035600' => 'ghi', 'Gohir.A02G117901' => 'ghi', 'Gohir.A07G210100' => 'ghi', 'Gohir.A07G210200' => 'ghi', 'Gohir.A08G061100' => 'ghi', 'Gohir.A09G223000' => 'ghi', 'Gohir.A09G223100' => 'ghi', 'Gohir.A10G113900' => 'ghi', 'Gohir.A10G114000' => 'ghi', 'Gohir.D02G042300' => 'ghi', 'Gohir.D07G216100' => 'ghi', 'Gohir.D07G216200' => 'ghi', 'Gohir.D08G070400' => 'ghi', 'Gohir.D09G225000' => 'ghi', 'Gohir.D09G225100' => 'ghi', 'Gohir.D10G152300' => 'ghi', 'Gohir.D10G153200' => 'ghi', 'Gohir.D11G133701' => 'ghi', 'Gorai.004G074100' => 'gra', 'Gorai.005G046800' => 'gra', 'Gorai.006G246500' => 'gra', 'Gorai.006G246600' => 'gra', 'Gorai.007G142900' => 'gra', 'Gorai.011G171000' => 'gra', 'Gorai.011G171100' => 'gra', 'Gorai.013G104300' => 'gra', 'Gorai.013G104400' => 'gra', 'GSVIVG01000754001' => 'vvi', 'GSVIVG01000756001' => 'vvi', 'GSVIVG01010903001' => 'vvi', 'GSVIVG01017623001' => 'vvi', 'GSVIVG01018113001' => 'vvi', 'GSVIVG01018116001' => 'vvi', 'GSVIVG01018118001' => 'vvi', 'HanXRQChr03g0076211' => 'han', 'HanXRQChr03g0092431' => 'han', 'HanXRQChr03g0092441' => 'han', 'HanXRQChr03g0092591' => 'han', 'HanXRQChr03g0092671' => 'han', 'HanXRQChr03g0092681' => 'han', 'HanXRQChr03g0092691' => 'han', 'HanXRQChr03g0092701' => 'han', 'HanXRQChr03g0092721' => 'han', 'HanXRQChr03g0092731' => 'han', 'HanXRQChr04g0113681' => 'han', 'HanXRQChr10g0281371' => 'han', 'HanXRQChr11g0337141' => 'han', 'HanXRQChr13g0424521' => 'han', 'HanXRQChr13g0424531' => 'han', 'HanXRQChr13g0424541' => 'han', 'HanXRQChr16g0498221' => 'han', 'Haze_04377' => 'cav', 'Haze_11298' => 'cav', 'Haze_24547' => 'cav', 'Haze_24550' => 'cav', 'Haze_26587' => 'cav', 'Hma1.2p1_0650F.1_g195410' => 'hma', 'Hma1.2p1_0893F.1_g233470' => 'hma', 'HPP92_006508' => 'vpl', 'HPP92_024780' => 'vpl', 'Hund02688' => 'sun', 'Hund09380' => 'sun', 'Hund09381' => 'sun', 'Hund09832' => 'sun', 'Hund09833' => 'sun', 'Hund11351' => 'sun', 'Hund11513' => 'sun', 'Lalb_Chr06g0162591' => 'lal', 'Lalb_Chr06g0162601' => 'lal', 'Lalb_Chr06g0169321' => 'lal', 'Lalb_Chr09g0330951' => 'lal', 'Lalb_Chr16g0387631' => 'lal', 'Lalb_Chr21g0306241' => 'lal', 'Lalb_Chr25g0290051' => 'lal', 'Lalb_Chr25g0290061' => 'lal', 'Lalb_Chr25g0290071' => 'lal', 'Lj1g0003876' => 'lja', 'Lj1P1207T36' => 'lonja', 'Lj2C1156G12' => 'lonja', 'Lj3A793G39' => 'lonja', 'Lj3C580G2' => 'lonja', 'Lj3C780G2' => 'lonja', 'Lj3C780T4' => 'lonja', 'Lj3C793G9' => 'lonja', 'Lj4g0012960' => 'lja', 'Lj5g0021252' => 'lja', 'Lj5g0021484' => 'lja', 'Lj5g0024528' => 'lja', 'Lj6A399T12' => 'lonja', 'Lj6A656G65' => 'lonja', 'Lsat_1_v5_gn_3_125500' => 'lsa', 'Lsat_1_v5_gn_3_125540' => 'lsa', 'Lsat_1_v5_gn_5_72701' => 'lsa', 'Lsat_1_v5_gn_8_91560' => 'lsa', 'Lsat_1_v5_gn_9_9640' => 'lsa', 'Manes.01G200600' => 'mes', 'Manes.01G200700' => 'mes', 'Manes.03G168900' => 'mes', 'Manes.03G169000' => 'mes', 'Manes.05G085801' => 'mes', 'Manes.05G086200' => 'mes', 'Manes.15G036700' => 'mes', 'Manes.15G036900' => 'mes', 'Mapoly0004s0172' => 'mpo', 'Mapoly0023s0001' => 'mpo', 'Mapoly0142s0012' => 'mpo', 'MBI01_g32854_MAGBIO' => 'mbi', 'MBI11_g24427_MAGBIO' => 'mbi', 'MBI11_g47319_MAGBIO' => 'mbi', 'MCO01G433' => 'mco', 'MD00G1187800' => 'mdo', 'MD04G1226500' => 'mdo', 'MD05G1203900' => 'mdo', 'MD10G1191100' => 'mdo', 'MD12G1243500' => 'mdo', 'MD13G1207000' => 'mdo', 'MD13G1207100' => 'mdo', 'MD16G1208600' => 'mdo', 'Medtr1g050352' => 'mtr', 'Medtr1g070385' => 'mtr', 'Medtr1g070450' => 'mtr', 'Medtr1g075200' => 'mtr', 'Medtr1g075250' => 'mtr', 'Medtr1g075260' => 'mtr', 'Medtr1g475250' => 'mtr', 'Medtr4g075450' => 'mtr', 'Medtr7g096300' => 'mtr', 'Medtr8g105110' => 'mtr', 'MELO3C006470.2' => 'cme', 'MELO3C006471.2' => 'cme', 'MELO3C020772.2' => 'cme', 'MELO3C026780.2' => 'cme', 'MELO3C026781.2' => 'cme', 'Migut.D00390' => 'egut', 'Migut.G00435' => 'egut', 'Migut.G00436' => 'egut', 'Migut.G00718' => 'egut', 'MSTRG.21891' => 'ama', 'MSTRG.26910' => 'ama', 'MSTRG.4099' => 'ama', 'MSTRG.9925' => 'ama', 'Nitab4.5_0000165g0010' => 'nta', 'Nitab4.5_0000209g0180' => 'nta', 'Nitab4.5_0000244g0440' => 'nta', 'Nitab4.5_0000525g0220' => 'nta', 'Nitab4.5_0001597g0020' => 'nta', 'Nitab4.5_0001878g0040' => 'nta', 'Nitab4.5_0001878g0060' => 'nta', 'Nitab4.5_0002838g0100' => 'nta', 'Nitab4.5_0002838g0120' => 'nta', 'Nitab4.5_0004798g0030' => 'nta', 'Nitab4.5_0005420g0010' => 'nta', 'Nitab4.5_0005507g0010' => 'nta', 'Nitab4.5_0005574g0020' => 'nta', 'Nitab4.5_0005838g0010' => 'nta', 'Nitab4.5_0010580g0020' => 'nta', 'Nn1g02599' => 'nnu', 'Nn1g02608' => 'nnu', 'Nn3g17742' => 'nnu', 'Nn3g19534' => 'nnu', 'Nn3g19535' => 'nnu', 'Oeu008790.1' => 'oeu', 'Oeu008792.1' => 'oeu', 'Oeu032590.1' => 'oeu', 'Oeu035349.1' => 'oeu', 'Oeu049791.1' => 'oeu', 'Os01g0774500' => 'osa', 'Os03g0628800' => 'osa', 'Os03g0798600' => 'osa', 'Os05g0508800' => 'osa', 'Peaxi162Scf00036g02018' => 'pax', 'Peaxi162Scf00578g00032' => 'pax', 'Peaxi162Scf00578g00317' => 'pax', 'Peaxi162Scf00785g00114' => 'pax', 'Peaxi162Scf00813g00119' => 'pax', 'Peaxi162Scf00906g00227' => 'pax', 'PGR004G0875' => 'pgr', 'PGR004G2424' => 'pgr', 'PGR031G1239' => 'pgr', 'PGR031G2474' => 'pgr', 'PGR044G0423' => 'pgr', 'PGSC0003DMG400001128' => 'stu', 'PGSC0003DMG400007336' => 'stu', 'PGSC0003DMG400016318' => 'stu', 'PGSC0003DMG400016319' => 'stu', 'PGSC0003DMG400018074' => 'stu', 'Phvul.001G157700' => 'pvu', 'Phvul.002G148550' => 'pvu', 'Phvul.002G320200' => 'pvu', 'Phvul.003G089200' => 'pvu', 'Phvul.007G126000' => 'pvu', 'Phvul.007G126100' => 'pvu', 'Phvul.007G178000' => 'pvu', 'Phvul.007G178200' => 'pvu', 'Potri.002G043000' => 'ptr', 'Potri.002G043200' => 'ptr', 'Potri.003G123750' => 'ptr', 'Potri.005G055401' => 'ptr', 'Potri.005G219700' => 'ptr', 'Potri.005G220000' => 'ptr', 'Potri.008G161901' => 'ptr', 'Potri.008G162000' => 'ptr', 'Potri.008G162400' => 'ptr', 'Potri.010G076900' => 'ptr', 'Pp3c12_9180' => 'ppa', 'Pp3c13_19770' => 'ppa', 'Pp3c14_22950' => 'ppa', 'Pp3c16_12160' => 'ppa', 'Pp3c27_7820' => 'ppa', 'Pp3c2_3490' => 'ppa', 'Pp3c3_23700' => 'ppa', 'Pp3c3_36520' => 'ppa', 'Pp3c4_15250' => 'ppa', 'PRCOL_00007002' => 'pco', 'Prupe.1G030600' => 'ppe', 'Prupe.1G030700' => 'ppe', 'Prupe.6G345200' => 'ppe', 'Prupe.8G230300' => 'ppe', 'Prupe.8G230500' => 'ppe', 'Psat3g059600' => 'psa', 'Psat5g200920' => 'psa', 'Psat6g056440' => 'psa', 'Psat6g057360' => 'psa', 'Psat6g134120' => 'psa', 'Psat6g134160' => 'psa', 'Psat7g008640' => 'psa', 'Psat7g185240' => 'psa', 'PSO017G1330' => 'pso', 'PSO063G6097' => 'pso', 'PSO170G0835' => 'pso', 'PSO170G2499' => 'pso', 'PSO210G5058' => 'pso', 'PSO210G6154' => 'pso', 'PSO585G0031' => 'pso', 'PSO832G0264' => 'pso', 'PSO832G4288' => 'pso', 'QL03p027355' => 'qlo', 'QL03p027430' => 'qlo', 'QL04p081380' => 'qlo', 'QL06p015642' => 'qlo', 'QL06p015650' => 'qlo', 'QL06p015686' => 'qlo', 'QL12p042927' => 'qlo', 'QL93p1863_0035' => 'qlo', 'RcHm_v2.0_Chr3g0450581' => 'rch', 'RcHm_v2.0_Chr4g0390371' => 'rch', 'RcHm_v2.0_Chr4g0390381' => 'rch', 'RcHm_v2.0_Chr4g0390491' => 'rch', 'RcHm_v2.0_Chr4g0390501' => 'rch', 'RcHm_v2.0_Chr6g0289231' => 'rch', 'Rhsim04G0190400' => 'rsi', 'Rhsim04G0190500' => 'rsi', 'Rhsim04G0190600' => 'rsi', 'Rhsim13G0031400' => 'rsi', 'Rhsim13G0165600' => 'rsi', 'RhsimUnG0114600' => 'rsi', 'RhsimUnG0114700' => 'rsi', 'Sabra02G0034800' => 'sbr', 'Sabra02G0035100' => 'sbr', 'Sabra05G0168600' => 'sbr', 'Sabra05G0168800' => 'sbr', 'Sabra08G0123700' => 'sbr', 'Sabra10G0031900' => 'sbr', 'Sabra13G0039000' => 'sbr', 'SalBow2G0782' => 'sbo', 'SalBow2G1403' => 'sbo', 'SalBow4G0074' => 'sbo', 'SalBow4G2635' => 'sbo', 'SalBow5G3010' => 'sbo', 'Sc05g0000870' => 'sci', 'Sc05g0000890' => 'sci', 'Sc13g0005000' => 'sci', 'Sc13g0005030' => 'sci', 'Sc19g0003790' => 'sci', 'Sc19g0003800' => 'sci', 'Sed0003467' => 'sed', 'Sed0009355' => 'sed', 'Sed0009894' => 'sed', 'Sed0011972' => 'sed', 'Sed0021483' => 'sed', 'Sed0021750' => 'sed', 'Sed0026279' => 'sed', 'SEGI_05312' => 'sgi', 'SEGI_10112' => 'sgi', 'SEGI_15835' => 'sgi', 'SEGI_30386' => 'sgi', 'SEGI_34122' => 'sgi', 'SEGI_35063' => 'sgi', 'SGA_v2.0_scaffold101G29794' => 'sas', 'SGA_v2.0_scaffold1G00573' => 'sas', 'SGA_v2.0_scaffold79G25637' => 'sas', 'SGA_v2.0_scaffold88G27283' => 'sas', 'SGA_v2.0_scaffold88G27285' => 'sas', 'SGA_v2.0_scaffold88G27331' => 'sas', 'SHI09937' => 'shi', 'SMO119G0302' => 'smo', 'SMO137G0231' => 'smo', 'SMO367G1151' => 'smo', 'Solyc02g082000.3' => 'sly', 'Solyc06g031670.3' => 'sly', 'Solyc06g053810.3' => 'sly', 'Solyc07g025457.1' => 'sly', 'Solyc08g059740.1' => 'sly', 'Solyc08g059750.3' => 'sly', 'Solyc09g083370.3' => 'sly', 'Solyc12g038950.3' => 'sly', 'Sopen02g026630' => 'spe', 'Sopen06g018930' => 'spe', 'Sopen06g018940' => 'spe', 'Sopen08g009460' => 'spe', 'Sopen09g032290' => 'spe', 'Sp1g03080' => 'spa', 'Sp1g03090' => 'spa', 'Sp1g05480' => 'spa', 'Sp2g07860' => 'spa', 'Sp2g08430' => 'spa', 'Sp2g08440' => 'spa', 'Sp2g26200' => 'spa', 'Sp4g13170' => 'spa', 'Sp6g33840' => 'spa', 'SpUn1204_0010' => 'spa', 'TAR365G0908' => 'tar', 'TAR381G1270' => 'tar', 'TAR381G1651' => 'tar', 'TAR625G1131' => 'tar', 'TAR633G0962' => 'tar', 'TAR633G1729' => 'tar', 'TAR633G1864' => 'tar', 'TAR636G0221' => 'tar', 'TAR636G0314' => 'tar', 'TAR636G3202' => 'tar', 'THA.LOC104800805' => 'tha', 'THA.LOC104801096' => 'tha', 'THA.LOC104801555' => 'tha', 'THA.LOC104808491' => 'tha', 'THA.LOC104808595' => 'tha', 'THA.LOC104815985' => 'tha', 'THA.LOC104822250' => 'tha', 'THA.LOC104826071' => 'tha', 'Thecc.01G265200' => 'tca', 'Thecc.01G265300' => 'tca', 'Thecc.01G265700' => 'tca', 'Thecc.03G109100' => 'tca', 'Thecc.04G245900' => 'tca', 'Thecc.04G246000' => 'tca', 'Thhalv10003334m.g' => 'esa', 'Thhalv10005508m.g' => 'esa', 'Thhalv10005643m.g' => 'esa', 'Thhalv10007316m.g' => 'esa', 'Thhalv10009006m.g' => 'esa', 'Thhalv10009309m.g' => 'esa', 'Thhalv10014917m.g' => 'esa', 'Thhalv10014919m.g' => 'esa', 'Thhalv10015393m.g' => 'esa', 'Thhalv10016515m.g' => 'esa', 'Thhalv10029242m.g' => 'esa', 'TPR.G16654' => 'tpr', 'TPR.G20589' => 'tpr', 'TPR.G23029' => 'tpr', 'TPR.G27731' => 'tpr', 'TPR.G28889' => 'tpr', 'TPR.G28899' => 'tpr', 'TPR.G30846' => 'tpr', 'TPR.G5452' => 'tpr', 'TPR.G5713' => 'tpr', 'TPR.G9046' => 'tpr', 'TPR.G9061' => 'tpr', 'TWI09G1075' => 'twi', 'TWI12G0806' => 'twi', 'TWI18G0108' => 'twi', 'TWI53G1361' => 'twi', 'TWI73G0185' => 'twi', 'TWI73G0427' => 'twi', 'unitig_37.g12001' => 'ugi', 'unitig_747.g21660' => 'ugi', 'unitig_748.g7232' => 'ugi', 'unitig_748.g7315' => 'ugi', 'unitig_85.g27262' => 'ugi', 'unitig_92.g28220' => 'ugi', 'vmacro02632' => 'vma', 'vmacro08410' => 'vma', 'vmacro08411' => 'vma', 'vmacro15407' => 'vma', 'VMungo0251G3619' => 'vmu', 'VMungo0720G1204' => 'vmu', 'VMungo0720G1918' => 'vmu', 'VMungo0720G2387' => 'vmu', 'VMungo0720G2961' => 'vmu', 'VMungo1215G2154' => 'vmu', 'VMungo1383G2411' => 'vmu', 'Zm00001eb051130' => 'zma', 'Zm00001eb116830' => 'zma', 'Zm00001eb116850' => 'zma', 'Zm00001eb151740' => 'zma', 'Zm00001eb292360' => 'zma', 'Zm00001eb301640' => 'zma' ), 'gf_id' => 'HOM05D000856', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000856' ), 'data_identifier' => 'HOM05D000856', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000856', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p00010' => 'bna', 'A03p04160' => 'bna', 'A03p17160' => 'bna', 'A04p23370' => 'bna', 'A05p14860' => 'bna', 'A08p37020' => 'bna', 'A09p08050' => 'bna', 'A09p66800' => 'bna', 'A09p67940' => 'bna', 'A10p02680' => 'bna', 'A10p05320' => 'bna', 'Aa31LG1G20560' => 'aar', 'Aa31LG1G20610' => 'aar', 'Aa31LG1G7810' => 'aar', 'Aa31LG5G3590' => 'aar', 'Aa31LG5G6140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3819' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4683' => 'aag', 'Actinidia04480' => 'ach', 'Actinidia05466' => 'ach', 'Actinidia08445' => 'ach', 'Actinidia21170' => 'ach', 'Actinidia24812' => 'ach', 'Actinidia24951' => 'ach', 'Actinidia40088' => 'ach', 'Ah.02g111660' => 'amhyb', 'Ah.11g048900' => 'amhyb', 'Ah.11g049910' => 'amhyb', 'AL1G13870' => 'aly', 'AL1G13880' => 'aly', 'AL1G16760' => 'aly', 'AL390U10020' => 'aly', 'AL4G25520' => 'aly', 'AL6G19890' => 'aly', 'AL6G19900' => 'aly', 'AL6G19910' => 'aly', 'AL8G40100' => 'aly', 'Aqoxy2G03562' => 'aox', 'Aqoxy5G00316' => 'aox', 'Aqoxy5G00926' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1628KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1H403S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2FU6SJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.882I6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8YRY2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YN1SN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AF70II' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZA8L1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F916KL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHRD8H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KTZ8QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S22EMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8M29T' => 'arhy', 'AT1G04270' => 'ath', 'AT1G04280' => 'ath', 'AT1G06750' => 'ath', 'AT1G33850' => 'ath', 'AT2G30630' => 'ath', 'AT5G09490' => 'ath', 'AT5G09500' => 'ath', 'AT5G09510' => 'ath', 'AT5G43640' => 'ath', 'AT5G63070' => 'ath', 'ATR0605G315' => 'atr', 'Atru.chr11.175' => 'acertr', 'Atru.chr11.653' => 'acertr', 'Atru.chr3.1616' => 'acertr', 'Atru.chr4.2230' => 'acertr', 'Atru.chr4.2232' => 'acertr', 'Atru.chr5.1598' => 'acertr', 'Atru.chr5.1600' => 'acertr', 'Atru.chr5.2188' => 'acertr', 'AUR62008326' => 'cqu', 'AUR62011922' => 'cqu', 'AUR62011924' => 'cqu', 'AUR62021771' => 'cqu', 'AUR62032237' => 'cqu', 'AUR62032240' => 'cqu', 'BcaB01g05572' => 'bca', 'BcaB02g10337' => 'bca', 'BcaB04g19944' => 'bca', 'BcaB05g21548' => 'bca', 'BcaB05g21549' => 'bca', 'BcaB05g23227' => 'bca', 'BcaB06g26256' => 'bca', 'BcaB06g26257' => 'bca', 'BcaB06g28379' => 'bca', 'BcaC02g11159' => 'bca', 'BcaC03g13258' => 'bca', 'BcaC03g13259' => 'bca', 'BcaC05g24456' => 'bca', 'BcaC05g24457' => 'bca', 'BcaC07g36922' => 'bca', 'BcaC07g36923' => 'bca', 'BcaC07g42050' => 'bca', 'BcaC07g42176' => 'bca', 'BcaC07g42195' => 'bca', 'BcaC07g42196' => 'bca', 'BcaNung06674' => 'bca', 'BolC2t06351H' => 'bol', 'BolC2t06352H' => 'bol', 'BolC3t12993H' => 'bol', 'BolC4t23525H' => 'bol', 'BolC4t27475H' => 'bol', 'BolC5t29025H' => 'bol', 'BolC5t29026H' => 'bol', 'BolC8t46898H' => 'bol', 'BolC8t46899H' => 'bol', 'BolC8t52630H' => 'bol', 'BolC8t52765H' => 'bol', 'BolC9t53824H' => 'bol', 'BraA03t09760Z' => 'bra', 'BraA03t10990Z' => 'bra', 'BraA05t20413Z' => 'bra', 'BraA08t35602Z' => 'bra', 'BraA09t36458Z' => 'bra', 'BraA09t42018Z' => 'bra', 'BraA09t42129Z' => 'bra', 'BraA10t42536Z' => 'bra', 'BraA10t42537Z' => 'bra', 'C01p10690' => 'bna', 'C02p03890' => 'bna', 'C02p03900' => 'bna', 'C03p04620' => 'bna', 'C04p19870' => 'bna', 'C04p59670' => 'bna', 'C05p02460' => 'bna', 'C05p02470' => 'bna', 'C08p00980' => 'bna', 'C08p00990' => 'bna', 'C08p51030' => 'bna', 'C08p52360' => 'bna', 'C09p09120' => 'bna', 'CAN.G19.15' => 'can', 'CAN.G251.10' => 'can', 'CAN.G251.9' => 'can', 'CAN.G398.24' => 'can', 'CAN.G410.32' => 'can', 'CAN.G881.2' => 'can', 'CANSAT01G3025' => 'cansat', 'CANSAT78G1211' => 'cansat', 'CANSAT78G1218' => 'cansat', 'CANSAT78G1521' => 'cansat', 'CANSAT78G1670' => 'cansat', 'CARHR003600' => 'chi', 'CARHR003610' => 'chi', 'CARHR006290' => 'chi', 'CARHR006430' => 'chi', 'CARHR124110' => 'chi', 'CARHR203870' => 'chi', 'CARHR203880' => 'chi', 'CARHR203890' => 'chi', 'CARHR276880' => 'chi', 'Carub.0001s0346' => 'cru', 'Carub.0001s0347' => 'cru', 'Carub.0001s0607' => 'cru', 'Carub.0003s2768' => 'cru', 'Carub.0003s2769' => 'cru', 'Carub.0004s1178' => 'cru', 'Carub.0006s0806' => 'cru', 'Carub.0006s0807' => 'cru', 'Carub.0006s0808' => 'cru', 'Carub.0008s0501' => 'cru', 'Carub.0008s2379' => 'cru', 'Ca_08655_v3' => 'car', 'Ca_08922_v3' => 'car', 'Ca_08923_v3' => 'car', 'Ca_09119_v3' => 'car', 'Ca_09703_v3' => 'car', 'Ca_09705_v3' => 'car', 'Ca_09835_v3' => 'car', 'Ca_26403_v3' => 'car', 'Ca_30719_v3' => 'car', 'CBR_g17958' => 'cbr', 'CBR_g40516' => 'cbr', 'Cc00_g05350' => 'ccan', 'Cc01_g18690' => 'ccan', 'Cc03_g04830' => 'ccan', 'Cc03_g04850' => 'ccan', 'CDE02G4469' => 'cde', 'CDE06G0883' => 'cde', 'CDE06G1295' => 'cde', 'CDE06G1390' => 'cde', 'CDE07G0584' => 'cde', 'CDE07G1084' => 'cde', 'CDE08G1259' => 'cde', 'Cfa002341' => 'cfa', 'Cfa024337' => 'cfa', 'Ciclev10004749m.g' => 'ccl', 'Ciclev10006127m.g' => 'ccl', 'Ciclev10019720m.g' => 'ccl', 'Ciclev10022652m.g' => 'ccl', 'CiPaw.01G190400' => 'cil', 'CiPaw.01G190500' => 'cil', 'CiPaw.02G116400' => 'cil', 'CiPaw.02G116500' => 'cil', 'CiPaw.04G183000' => 'cil', 'CiPaw.04G183300' => 'cil', 'ClCG05G004610' => 'cla', 'ClCG05G004620' => 'cla', 'ClCG06G006730' => 'cla', 'ClCG06G006740' => 'cla', 'ClCG11G003690' => 'cla', 'COL.COLO4_08276' => 'col', 'COL.COLO4_08277' => 'col', 'COL.COLO4_15787' => 'col', 'COL.COLO4_15789' => 'col', 'Cpa.g.c44815' => 'cpa', 'Cpa.g.sc52.144' => 'cpa', 'Cpa.g.sc58.46' => 'cpa', 'Cpa.g.sc58.47' => 'cpa', 'Cre08.g360900' => 'cre', 'CsaV3_2G013030' => 'csa', 'CsaV3_2G013050' => 'csa', 'CsaV3_2G015620' => 'csa', 'CsaV3_3G012590' => 'csa', 'CsaV3_3G012600' => 'csa', 'CSS0001641' => 'camsi', 'CSS0008310' => 'camsi', 'CSS0013011' => 'camsi', 'CSS0017147' => 'camsi', 'CSS0022970' => 'camsi', 'CSS0025655' => 'camsi', 'CSS0028665' => 'camsi', 'CSS0029117' => 'camsi', 'CSS0032024' => 'camsi', 'CSS0039681' => 'camsi', 'CSS0046516' => 'camsi', 'CSS0050307' => 'camsi', 'DCAR_005871' => 'dca', 'DCAR_007342' => 'dca', 'DCAR_024228' => 'dca', 'DCAR_027277' => 'dca', 'DCAR_030718' => 'dca', 'Dinv20287' => 'din', 'Dinv22461' => 'din', 'Dinv22464' => 'din', 'Dinv29912' => 'din', 'Dinv29913' => 'din', 'Dinv34580' => 'din', 'Dinv34582' => 'din', 'Dinv44632' => 'din', 'Duzib052G0266' => 'dzi', 'Duzib133G0907' => 'dzi', 'Duzib133G1034' => 'dzi', 'Duzib138G0207' => 'dzi', 'Duzib138G0491' => 'dzi', 'Duzib151G0812' => 'dzi', 'Duzib151G1166' => 'dzi', 'Duzib168G0192' => 'dzi', 'Duzib211G0077' => 'dzi', 'Duzib212G0429' => 'dzi', 'Duzib212G0472' => 'dzi', 'ECA233G2617' => 'eca', 'ECA236G4188' => 'eca', 'ECA240G0936' => 'eca', 'ECA240G1129' => 'eca', 'ECA247G0623' => 'eca', 'EL10Ac5g10451' => 'bvu', 'EL10Ac5g10453' => 'bvu', 'EL10Ac5g10894' => 'bvu', 'Eucgr.H00192' => 'egr', 'Eucgr.H00193' => 'egr', 'Eucgr.H00194' => 'egr', 'Eucgr.J01562' => 'egr', 'Eucgr.K03301' => 'egr', 'FAN02G0632' => 'fan', 'FAN05G5378' => 'fan', 'FAN09G3247' => 'fan', 'FAN12G0435' => 'fan', 'FAN12G2426' => 'fan', 'FAN14G1707' => 'fan', 'FAN14G4725' => 'fan', 'FAN15G2071' => 'fan', 'FAN17G3065' => 'fan', 'FAN19G1376' => 'fan', 'FAN20G0354' => 'fan', 'FAN20G2429' => 'fan', 'FAN20G2658' => 'fan', 'FAN24G2343' => 'fan', 'FAN27G2362' => 'fan', 'FAN28G1765' => 'fan', 'FvH4_1g16020' => 'fve', 'FvH4_2g04890' => 'fve', 'FvH4_2g22270' => 'fve', 'FvH4_4g02630' => 'fve', 'FvH4_4g02640' => 'fve', 'FvH4_6g02650' => 'fve', 'Glyma.02G140600' => 'gma', 'Glyma.03G159900' => 'gma', 'Glyma.05G234800' => 'gma', 'Glyma.07G269600' => 'gma', 'Glyma.08G042300' => 'gma', 'Glyma.10G033500' => 'gma', 'Glyma.10G185200' => 'gma', 'Glyma.17G004300' => 'gma', 'Glyma.19G161900' => 'gma', 'Glyma.20G205100' => 'gma', 'Glyma.20G205200' => 'gma', 'Gohir.A01G139101' => 'ghi', 'Gohir.A02G035600' => 'ghi', 'Gohir.A02G117901' => 'ghi', 'Gohir.A07G210100' => 'ghi', 'Gohir.A07G210200' => 'ghi', 'Gohir.A08G061100' => 'ghi', 'Gohir.A09G223000' => 'ghi', 'Gohir.A09G223100' => 'ghi', 'Gohir.A10G113900' => 'ghi', 'Gohir.A10G114000' => 'ghi', 'Gohir.D02G042300' => 'ghi', 'Gohir.D07G216100' => 'ghi', 'Gohir.D07G216200' => 'ghi', 'Gohir.D08G070400' => 'ghi', 'Gohir.D09G225000' => 'ghi', 'Gohir.D09G225100' => 'ghi', 'Gohir.D10G152300' => 'ghi', 'Gohir.D10G153200' => 'ghi', 'Gohir.D11G133701' => 'ghi', 'Gorai.004G074100' => 'gra', 'Gorai.005G046800' => 'gra', 'Gorai.006G246500' => 'gra', 'Gorai.006G246600' => 'gra', 'Gorai.007G142900' => 'gra', 'Gorai.011G171000' => 'gra', 'Gorai.011G171100' => 'gra', 'Gorai.013G104300' => 'gra', 'Gorai.013G104400' => 'gra', 'GSVIVG01000754001' => 'vvi', 'GSVIVG01000756001' => 'vvi', 'GSVIVG01010903001' => 'vvi', 'GSVIVG01017623001' => 'vvi', 'GSVIVG01018113001' => 'vvi', 'GSVIVG01018116001' => 'vvi', 'GSVIVG01018118001' => 'vvi', 'HanXRQChr03g0076211' => 'han', 'HanXRQChr03g0092431' => 'han', 'HanXRQChr03g0092441' => 'han', 'HanXRQChr03g0092591' => 'han', 'HanXRQChr03g0092671' => 'han', 'HanXRQChr03g0092681' => 'han', 'HanXRQChr03g0092691' => 'han', 'HanXRQChr03g0092701' => 'han', 'HanXRQChr03g0092721' => 'han', 'HanXRQChr03g0092731' => 'han', 'HanXRQChr04g0113681' => 'han', 'HanXRQChr10g0281371' => 'han', 'HanXRQChr11g0337141' => 'han', 'HanXRQChr13g0424521' => 'han', 'HanXRQChr13g0424531' => 'han', 'HanXRQChr13g0424541' => 'han', 'HanXRQChr16g0498221' => 'han', 'Haze_04377' => 'cav', 'Haze_11298' => 'cav', 'Haze_24547' => 'cav', 'Haze_24550' => 'cav', 'Haze_26587' => 'cav', 'Hma1.2p1_0650F.1_g195410' => 'hma', 'Hma1.2p1_0893F.1_g233470' => 'hma', 'HPP92_006508' => 'vpl', 'HPP92_024780' => 'vpl', 'Hund02688' => 'sun', 'Hund09380' => 'sun', 'Hund09381' => 'sun', 'Hund09832' => 'sun', 'Hund09833' => 'sun', 'Hund11351' => 'sun', 'Hund11513' => 'sun', 'Lalb_Chr06g0162591' => 'lal', 'Lalb_Chr06g0162601' => 'lal', 'Lalb_Chr06g0169321' => 'lal', 'Lalb_Chr09g0330951' => 'lal', 'Lalb_Chr16g0387631' => 'lal', 'Lalb_Chr21g0306241' => 'lal', 'Lalb_Chr25g0290051' => 'lal', 'Lalb_Chr25g0290061' => 'lal', 'Lalb_Chr25g0290071' => 'lal', 'Lj1g0003876' => 'lja', 'Lj1P1207T36' => 'lonja', 'Lj2C1156G12' => 'lonja', 'Lj3A793G39' => 'lonja', 'Lj3C580G2' => 'lonja', 'Lj3C780G2' => 'lonja', 'Lj3C780T4' => 'lonja', 'Lj3C793G9' => 'lonja', 'Lj4g0012960' => 'lja', 'Lj5g0021252' => 'lja', 'Lj5g0021484' => 'lja', 'Lj5g0024528' => 'lja', 'Lj6A399T12' => 'lonja', 'Lj6A656G65' => 'lonja', 'Lsat_1_v5_gn_3_125500' => 'lsa', 'Lsat_1_v5_gn_3_125540' => 'lsa', 'Lsat_1_v5_gn_5_72701' => 'lsa', 'Lsat_1_v5_gn_8_91560' => 'lsa', 'Lsat_1_v5_gn_9_9640' => 'lsa', 'Manes.01G200600' => 'mes', 'Manes.01G200700' => 'mes', 'Manes.03G168900' => 'mes', 'Manes.03G169000' => 'mes', 'Manes.05G085801' => 'mes', 'Manes.05G086200' => 'mes', 'Manes.15G036700' => 'mes', 'Manes.15G036900' => 'mes', 'Mapoly0004s0172' => 'mpo', 'Mapoly0023s0001' => 'mpo', 'Mapoly0142s0012' => 'mpo', 'MBI01_g32854_MAGBIO' => 'mbi', 'MBI11_g24427_MAGBIO' => 'mbi', 'MBI11_g47319_MAGBIO' => 'mbi', 'MCO01G433' => 'mco', 'MD00G1187800' => 'mdo', 'MD04G1226500' => 'mdo', 'MD05G1203900' => 'mdo', 'MD10G1191100' => 'mdo', 'MD12G1243500' => 'mdo', 'MD13G1207000' => 'mdo', 'MD13G1207100' => 'mdo', 'MD16G1208600' => 'mdo', 'Medtr1g050352' => 'mtr', 'Medtr1g070385' => 'mtr', 'Medtr1g070450' => 'mtr', 'Medtr1g075200' => 'mtr', 'Medtr1g075250' => 'mtr', 'Medtr1g075260' => 'mtr', 'Medtr1g475250' => 'mtr', 'Medtr4g075450' => 'mtr', 'Medtr7g096300' => 'mtr', 'Medtr8g105110' => 'mtr', 'MELO3C006470.2' => 'cme', 'MELO3C006471.2' => 'cme', 'MELO3C020772.2' => 'cme', 'MELO3C026780.2' => 'cme', 'MELO3C026781.2' => 'cme', 'Migut.D00390' => 'egut', 'Migut.G00435' => 'egut', 'Migut.G00436' => 'egut', 'Migut.G00718' => 'egut', 'MSTRG.21891' => 'ama', 'MSTRG.26910' => 'ama', 'MSTRG.4099' => 'ama', 'MSTRG.9925' => 'ama', 'Nitab4.5_0000165g0010' => 'nta', 'Nitab4.5_0000209g0180' => 'nta', 'Nitab4.5_0000244g0440' => 'nta', 'Nitab4.5_0000525g0220' => 'nta', 'Nitab4.5_0001597g0020' => 'nta', 'Nitab4.5_0001878g0040' => 'nta', 'Nitab4.5_0001878g0060' => 'nta', 'Nitab4.5_0002838g0100' => 'nta', 'Nitab4.5_0002838g0120' => 'nta', 'Nitab4.5_0004798g0030' => 'nta', 'Nitab4.5_0005420g0010' => 'nta', 'Nitab4.5_0005507g0010' => 'nta', 'Nitab4.5_0005574g0020' => 'nta', 'Nitab4.5_0005838g0010' => 'nta', 'Nitab4.5_0010580g0020' => 'nta', 'Nn1g02599' => 'nnu', 'Nn1g02608' => 'nnu', 'Nn3g17742' => 'nnu', 'Nn3g19534' => 'nnu', 'Nn3g19535' => 'nnu', 'Oeu008790.1' => 'oeu', 'Oeu008792.1' => 'oeu', 'Oeu032590.1' => 'oeu', 'Oeu035349.1' => 'oeu', 'Oeu049791.1' => 'oeu', 'Os01g0774500' => 'osa', 'Os03g0628800' => 'osa', 'Os03g0798600' => 'osa', 'Os05g0508800' => 'osa', 'Peaxi162Scf00036g02018' => 'pax', 'Peaxi162Scf00578g00032' => 'pax', 'Peaxi162Scf00578g00317' => 'pax', 'Peaxi162Scf00785g00114' => 'pax', 'Peaxi162Scf00813g00119' => 'pax', 'Peaxi162Scf00906g00227' => 'pax', 'PGR004G0875' => 'pgr', 'PGR004G2424' => 'pgr', 'PGR031G1239' => 'pgr', 'PGR031G2474' => 'pgr', 'PGR044G0423' => 'pgr', 'PGSC0003DMG400001128' => 'stu', 'PGSC0003DMG400007336' => 'stu', 'PGSC0003DMG400016318' => 'stu', 'PGSC0003DMG400016319' => 'stu', 'PGSC0003DMG400018074' => 'stu', 'Phvul.001G157700' => 'pvu', 'Phvul.002G148550' => 'pvu', 'Phvul.002G320200' => 'pvu', 'Phvul.003G089200' => 'pvu', 'Phvul.007G126000' => 'pvu', 'Phvul.007G126100' => 'pvu', 'Phvul.007G178000' => 'pvu', 'Phvul.007G178200' => 'pvu', 'Potri.002G043000' => 'ptr', 'Potri.002G043200' => 'ptr', 'Potri.003G123750' => 'ptr', 'Potri.005G055401' => 'ptr', 'Potri.005G219700' => 'ptr', 'Potri.005G220000' => 'ptr', 'Potri.008G161901' => 'ptr', 'Potri.008G162000' => 'ptr', 'Potri.008G162400' => 'ptr', 'Potri.010G076900' => 'ptr', 'Pp3c12_9180' => 'ppa', 'Pp3c13_19770' => 'ppa', 'Pp3c14_22950' => 'ppa', 'Pp3c16_12160' => 'ppa', 'Pp3c27_7820' => 'ppa', 'Pp3c2_3490' => 'ppa', 'Pp3c3_23700' => 'ppa', 'Pp3c3_36520' => 'ppa', 'Pp3c4_15250' => 'ppa', 'PRCOL_00007002' => 'pco', 'Prupe.1G030600' => 'ppe', 'Prupe.1G030700' => 'ppe', 'Prupe.6G345200' => 'ppe', 'Prupe.8G230300' => 'ppe', 'Prupe.8G230500' => 'ppe', 'Psat3g059600' => 'psa', 'Psat5g200920' => 'psa', 'Psat6g056440' => 'psa', 'Psat6g057360' => 'psa', 'Psat6g134120' => 'psa', 'Psat6g134160' => 'psa', 'Psat7g008640' => 'psa', 'Psat7g185240' => 'psa', 'PSO017G1330' => 'pso', 'PSO063G6097' => 'pso', 'PSO170G0835' => 'pso', 'PSO170G2499' => 'pso', 'PSO210G5058' => 'pso', 'PSO210G6154' => 'pso', 'PSO585G0031' => 'pso', 'PSO832G0264' => 'pso', 'PSO832G4288' => 'pso', 'QL03p027355' => 'qlo', 'QL03p027430' => 'qlo', 'QL04p081380' => 'qlo', 'QL06p015642' => 'qlo', 'QL06p015650' => 'qlo', 'QL06p015686' => 'qlo', 'QL12p042927' => 'qlo', 'QL93p1863_0035' => 'qlo', 'RcHm_v2.0_Chr3g0450581' => 'rch', 'RcHm_v2.0_Chr4g0390371' => 'rch', 'RcHm_v2.0_Chr4g0390381' => 'rch', 'RcHm_v2.0_Chr4g0390491' => 'rch', 'RcHm_v2.0_Chr4g0390501' => 'rch', 'RcHm_v2.0_Chr6g0289231' => 'rch', 'Rhsim04G0190400' => 'rsi', 'Rhsim04G0190500' => 'rsi', 'Rhsim04G0190600' => 'rsi', 'Rhsim13G0031400' => 'rsi', 'Rhsim13G0165600' => 'rsi', 'RhsimUnG0114600' => 'rsi', 'RhsimUnG0114700' => 'rsi', 'Sabra02G0034800' => 'sbr', 'Sabra02G0035100' => 'sbr', 'Sabra05G0168600' => 'sbr', 'Sabra05G0168800' => 'sbr', 'Sabra08G0123700' => 'sbr', 'Sabra10G0031900' => 'sbr', 'Sabra13G0039000' => 'sbr', 'SalBow2G0782' => 'sbo', 'SalBow2G1403' => 'sbo', 'SalBow4G0074' => 'sbo', 'SalBow4G2635' => 'sbo', 'SalBow5G3010' => 'sbo', 'Sc05g0000870' => 'sci', 'Sc05g0000890' => 'sci', 'Sc13g0005000' => 'sci', 'Sc13g0005030' => 'sci', 'Sc19g0003790' => 'sci', 'Sc19g0003800' => 'sci', 'Sed0003467' => 'sed', 'Sed0009355' => 'sed', 'Sed0009894' => 'sed', 'Sed0011972' => 'sed', 'Sed0021483' => 'sed', 'Sed0021750' => 'sed', 'Sed0026279' => 'sed', 'SEGI_05312' => 'sgi', 'SEGI_10112' => 'sgi', 'SEGI_15835' => 'sgi', 'SEGI_30386' => 'sgi', 'SEGI_34122' => 'sgi', 'SEGI_35063' => 'sgi', 'SGA_v2.0_scaffold101G29794' => 'sas', 'SGA_v2.0_scaffold1G00573' => 'sas', 'SGA_v2.0_scaffold79G25637' => 'sas', 'SGA_v2.0_scaffold88G27283' => 'sas', 'SGA_v2.0_scaffold88G27285' => 'sas', 'SGA_v2.0_scaffold88G27331' => 'sas', 'SHI09937' => 'shi', 'SMO119G0302' => 'smo', 'SMO137G0231' => 'smo', 'SMO367G1151' => 'smo', 'Solyc02g082000.3' => 'sly', 'Solyc06g031670.3' => 'sly', 'Solyc06g053810.3' => 'sly', 'Solyc07g025457.1' => 'sly', 'Solyc08g059740.1' => 'sly', 'Solyc08g059750.3' => 'sly', 'Solyc09g083370.3' => 'sly', 'Solyc12g038950.3' => 'sly', 'Sopen02g026630' => 'spe', 'Sopen06g018930' => 'spe', 'Sopen06g018940' => 'spe', 'Sopen08g009460' => 'spe', 'Sopen09g032290' => 'spe', 'Sp1g03080' => 'spa', 'Sp1g03090' => 'spa', 'Sp1g05480' => 'spa', 'Sp2g07860' => 'spa', 'Sp2g08430' => 'spa', 'Sp2g08440' => 'spa', 'Sp2g26200' => 'spa', 'Sp4g13170' => 'spa', 'Sp6g33840' => 'spa', 'SpUn1204_0010' => 'spa', 'TAR365G0908' => 'tar', 'TAR381G1270' => 'tar', 'TAR381G1651' => 'tar', 'TAR625G1131' => 'tar', 'TAR633G0962' => 'tar', 'TAR633G1729' => 'tar', 'TAR633G1864' => 'tar', 'TAR636G0221' => 'tar', 'TAR636G0314' => 'tar', 'TAR636G3202' => 'tar', 'THA.LOC104800805' => 'tha', 'THA.LOC104801096' => 'tha', 'THA.LOC104801555' => 'tha', 'THA.LOC104808491' => 'tha', 'THA.LOC104808595' => 'tha', 'THA.LOC104815985' => 'tha', 'THA.LOC104822250' => 'tha', 'THA.LOC104826071' => 'tha', 'Thecc.01G265200' => 'tca', 'Thecc.01G265300' => 'tca', 'Thecc.01G265700' => 'tca', 'Thecc.03G109100' => 'tca', 'Thecc.04G245900' => 'tca', 'Thecc.04G246000' => 'tca', 'Thhalv10003334m.g' => 'esa', 'Thhalv10005508m.g' => 'esa', 'Thhalv10005643m.g' => 'esa', 'Thhalv10007316m.g' => 'esa', 'Thhalv10009006m.g' => 'esa', 'Thhalv10009309m.g' => 'esa', 'Thhalv10014917m.g' => 'esa', 'Thhalv10014919m.g' => 'esa', 'Thhalv10015393m.g' => 'esa', 'Thhalv10016515m.g' => 'esa', 'Thhalv10029242m.g' => 'esa', 'TPR.G16654' => 'tpr', 'TPR.G20589' => 'tpr', 'TPR.G23029' => 'tpr', 'TPR.G27731' => 'tpr', 'TPR.G28889' => 'tpr', 'TPR.G28899' => 'tpr', 'TPR.G30846' => 'tpr', 'TPR.G5452' => 'tpr', 'TPR.G5713' => 'tpr', 'TPR.G9046' => 'tpr', 'TPR.G9061' => 'tpr', 'TWI09G1075' => 'twi', 'TWI12G0806' => 'twi', 'TWI18G0108' => 'twi', 'TWI53G1361' => 'twi', 'TWI73G0185' => 'twi', 'TWI73G0427' => 'twi', 'unitig_37.g12001' => 'ugi', 'unitig_747.g21660' => 'ugi', 'unitig_748.g7232' => 'ugi', 'unitig_748.g7315' => 'ugi', 'unitig_85.g27262' => 'ugi', 'unitig_92.g28220' => 'ugi', 'vmacro02632' => 'vma', 'vmacro08410' => 'vma', 'vmacro08411' => 'vma', 'vmacro15407' => 'vma', 'VMungo0251G3619' => 'vmu', 'VMungo0720G1204' => 'vmu', 'VMungo0720G1918' => 'vmu', 'VMungo0720G2387' => 'vmu', 'VMungo0720G2961' => 'vmu', 'VMungo1215G2154' => 'vmu', 'VMungo1383G2411' => 'vmu', 'Zm00001eb051130' => 'zma', 'Zm00001eb116830' => 'zma', 'Zm00001eb116850' => 'zma', 'Zm00001eb151740' => 'zma', 'Zm00001eb292360' => 'zma', 'Zm00001eb301640' => 'zma' ) $gf_id = 'HOM05D000856' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000856' ) $data_identifier = 'HOM05D000856' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 13, 'ath' => (int) 10, 'atr' => (int) 1, 'acertr' => (int) 8, 'cqu' => (int) 6, 'bca' => (int) 21, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 11, 'car' => (int) 9, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 8, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 5, 'fan' => (int) 16, 'fve' => (int) 6, 'gma' => (int) 11, 'ghi' => (int) 19, 'gra' => (int) 9, 'vvi' => (int) 7, 'han' => (int) 17, 'cav' => (int) 5, 'hma' => (int) 2, 'vpl' => (int) 2, 'sun' => (int) 7, 'lal' => (int) 9, 'lja' => (int) 5, 'lonja' => (int) 9, 'lsa' => (int) 5, 'mes' => (int) 8, 'mpo' => (int) 3, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 10, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 15, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 9, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 9, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 6, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 5, 'spa' => (int) 10, 'tar' => (int) 10, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 11, 'tpr' => (int) 11, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 4, 'vmu' => (int) 7, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb301640' $species_info = array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ) $local_species = 'rch' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000856', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p00010' => 'bna', 'A03p04160' => 'bna', 'A03p17160' => 'bna', 'A04p23370' => 'bna', 'A05p14860' => 'bna', 'A08p37020' => 'bna', 'A09p08050' => 'bna', 'A09p66800' => 'bna', 'A09p67940' => 'bna', 'A10p02680' => 'bna', 'A10p05320' => 'bna', 'Aa31LG1G20560' => 'aar', 'Aa31LG1G20610' => 'aar', 'Aa31LG1G7810' => 'aar', 'Aa31LG5G3590' => 'aar', 'Aa31LG5G6140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3819' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4683' => 'aag', 'Actinidia04480' => 'ach', 'Actinidia05466' => 'ach', 'Actinidia08445' => 'ach', 'Actinidia21170' => 'ach', 'Actinidia24812' => 'ach', 'Actinidia24951' => 'ach', 'Actinidia40088' => 'ach', 'Ah.02g111660' => 'amhyb', 'Ah.11g048900' => 'amhyb', 'Ah.11g049910' => 'amhyb', 'AL1G13870' => 'aly', 'AL1G13880' => 'aly', 'AL1G16760' => 'aly', 'AL390U10020' => 'aly', 'AL4G25520' => 'aly', 'AL6G19890' => 'aly', 'AL6G19900' => 'aly', 'AL6G19910' => 'aly', 'AL8G40100' => 'aly', 'Aqoxy2G03562' => 'aox', 'Aqoxy5G00316' => 'aox', 'Aqoxy5G00926' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1628KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1H403S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2FU6SJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.882I6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8YRY2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YN1SN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AF70II' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZA8L1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F916KL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHRD8H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KTZ8QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S22EMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8M29T' => 'arhy', 'AT1G04270' => 'ath', 'AT1G04280' => 'ath', 'AT1G06750' => 'ath', 'AT1G33850' => 'ath', 'AT2G30630' => 'ath', 'AT5G09490' => 'ath', 'AT5G09500' => 'ath', 'AT5G09510' => 'ath', 'AT5G43640' => 'ath', 'AT5G63070' => 'ath', 'ATR0605G315' => 'atr', 'Atru.chr11.175' => 'acertr', 'Atru.chr11.653' => 'acertr', 'Atru.chr3.1616' => 'acertr', 'Atru.chr4.2230' => 'acertr', 'Atru.chr4.2232' => 'acertr', 'Atru.chr5.1598' => 'acertr', 'Atru.chr5.1600' => 'acertr', 'Atru.chr5.2188' => 'acertr', 'AUR62008326' => 'cqu', 'AUR62011922' => 'cqu', 'AUR62011924' => 'cqu', 'AUR62021771' => 'cqu', 'AUR62032237' => 'cqu', 'AUR62032240' => 'cqu', 'BcaB01g05572' => 'bca', 'BcaB02g10337' => 'bca', 'BcaB04g19944' => 'bca', 'BcaB05g21548' => 'bca', 'BcaB05g21549' => 'bca', 'BcaB05g23227' => 'bca', 'BcaB06g26256' => 'bca', 'BcaB06g26257' => 'bca', 'BcaB06g28379' => 'bca', 'BcaC02g11159' => 'bca', 'BcaC03g13258' => 'bca', 'BcaC03g13259' => 'bca', 'BcaC05g24456' => 'bca', 'BcaC05g24457' => 'bca', 'BcaC07g36922' => 'bca', 'BcaC07g36923' => 'bca', 'BcaC07g42050' => 'bca', 'BcaC07g42176' => 'bca', 'BcaC07g42195' => 'bca', 'BcaC07g42196' => 'bca', 'BcaNung06674' => 'bca', 'BolC2t06351H' => 'bol', 'BolC2t06352H' => 'bol', 'BolC3t12993H' => 'bol', 'BolC4t23525H' => 'bol', 'BolC4t27475H' => 'bol', 'BolC5t29025H' => 'bol', 'BolC5t29026H' => 'bol', 'BolC8t46898H' => 'bol', 'BolC8t46899H' => 'bol', 'BolC8t52630H' => 'bol', 'BolC8t52765H' => 'bol', 'BolC9t53824H' => 'bol', 'BraA03t09760Z' => 'bra', 'BraA03t10990Z' => 'bra', 'BraA05t20413Z' => 'bra', 'BraA08t35602Z' => 'bra', 'BraA09t36458Z' => 'bra', 'BraA09t42018Z' => 'bra', 'BraA09t42129Z' => 'bra', 'BraA10t42536Z' => 'bra', 'BraA10t42537Z' => 'bra', 'C01p10690' => 'bna', 'C02p03890' => 'bna', 'C02p03900' => 'bna', 'C03p04620' => 'bna', 'C04p19870' => 'bna', 'C04p59670' => 'bna', 'C05p02460' => 'bna', 'C05p02470' => 'bna', 'C08p00980' => 'bna', 'C08p00990' => 'bna', 'C08p51030' => 'bna', 'C08p52360' => 'bna', 'C09p09120' => 'bna', 'CAN.G19.15' => 'can', 'CAN.G251.10' => 'can', 'CAN.G251.9' => 'can', 'CAN.G398.24' => 'can', 'CAN.G410.32' => 'can', 'CAN.G881.2' => 'can', 'CANSAT01G3025' => 'cansat', 'CANSAT78G1211' => 'cansat', 'CANSAT78G1218' => 'cansat', 'CANSAT78G1521' => 'cansat', 'CANSAT78G1670' => 'cansat', 'CARHR003600' => 'chi', 'CARHR003610' => 'chi', 'CARHR006290' => 'chi', 'CARHR006430' => 'chi', 'CARHR124110' => 'chi', 'CARHR203870' => 'chi', 'CARHR203880' => 'chi', 'CARHR203890' => 'chi', 'CARHR276880' => 'chi', 'Carub.0001s0346' => 'cru', 'Carub.0001s0347' => 'cru', 'Carub.0001s0607' => 'cru', 'Carub.0003s2768' => 'cru', 'Carub.0003s2769' => 'cru', 'Carub.0004s1178' => 'cru', 'Carub.0006s0806' => 'cru', 'Carub.0006s0807' => 'cru', 'Carub.0006s0808' => 'cru', 'Carub.0008s0501' => 'cru', 'Carub.0008s2379' => 'cru', 'Ca_08655_v3' => 'car', 'Ca_08922_v3' => 'car', 'Ca_08923_v3' => 'car', 'Ca_09119_v3' => 'car', 'Ca_09703_v3' => 'car', 'Ca_09705_v3' => 'car', 'Ca_09835_v3' => 'car', 'Ca_26403_v3' => 'car', 'Ca_30719_v3' => 'car', 'CBR_g17958' => 'cbr', 'CBR_g40516' => 'cbr', 'Cc00_g05350' => 'ccan', 'Cc01_g18690' => 'ccan', 'Cc03_g04830' => 'ccan', 'Cc03_g04850' => 'ccan', 'CDE02G4469' => 'cde', 'CDE06G0883' => 'cde', 'CDE06G1295' => 'cde', 'CDE06G1390' => 'cde', 'CDE07G0584' => 'cde', 'CDE07G1084' => 'cde', 'CDE08G1259' => 'cde', 'Cfa002341' => 'cfa', 'Cfa024337' => 'cfa', 'Ciclev10004749m.g' => 'ccl', 'Ciclev10006127m.g' => 'ccl', 'Ciclev10019720m.g' => 'ccl', 'Ciclev10022652m.g' => 'ccl', 'CiPaw.01G190400' => 'cil', 'CiPaw.01G190500' => 'cil', 'CiPaw.02G116400' => 'cil', 'CiPaw.02G116500' => 'cil', 'CiPaw.04G183000' => 'cil', 'CiPaw.04G183300' => 'cil', 'ClCG05G004610' => 'cla', 'ClCG05G004620' => 'cla', 'ClCG06G006730' => 'cla', 'ClCG06G006740' => 'cla', 'ClCG11G003690' => 'cla', 'COL.COLO4_08276' => 'col', 'COL.COLO4_08277' => 'col', 'COL.COLO4_15787' => 'col', 'COL.COLO4_15789' => 'col', 'Cpa.g.c44815' => 'cpa', 'Cpa.g.sc52.144' => 'cpa', 'Cpa.g.sc58.46' => 'cpa', 'Cpa.g.sc58.47' => 'cpa', 'Cre08.g360900' => 'cre', 'CsaV3_2G013030' => 'csa', 'CsaV3_2G013050' => 'csa', 'CsaV3_2G015620' => 'csa', 'CsaV3_3G012590' => 'csa', 'CsaV3_3G012600' => 'csa', 'CSS0001641' => 'camsi', 'CSS0008310' => 'camsi', 'CSS0013011' => 'camsi', 'CSS0017147' => 'camsi', 'CSS0022970' => 'camsi', 'CSS0025655' => 'camsi', 'CSS0028665' => 'camsi', 'CSS0029117' => 'camsi', 'CSS0032024' => 'camsi', 'CSS0039681' => 'camsi', 'CSS0046516' => 'camsi', 'CSS0050307' => 'camsi', 'DCAR_005871' => 'dca', 'DCAR_007342' => 'dca', 'DCAR_024228' => 'dca', 'DCAR_027277' => 'dca', 'DCAR_030718' => 'dca', 'Dinv20287' => 'din', 'Dinv22461' => 'din', 'Dinv22464' => 'din', 'Dinv29912' => 'din', 'Dinv29913' => 'din', 'Dinv34580' => 'din', 'Dinv34582' => 'din', 'Dinv44632' => 'din', 'Duzib052G0266' => 'dzi', 'Duzib133G0907' => 'dzi', 'Duzib133G1034' => 'dzi', 'Duzib138G0207' => 'dzi', 'Duzib138G0491' => 'dzi', 'Duzib151G0812' => 'dzi', 'Duzib151G1166' => 'dzi', 'Duzib168G0192' => 'dzi', 'Duzib211G0077' => 'dzi', 'Duzib212G0429' => 'dzi', 'Duzib212G0472' => 'dzi', 'ECA233G2617' => 'eca', 'ECA236G4188' => 'eca', 'ECA240G0936' => 'eca', 'ECA240G1129' => 'eca', 'ECA247G0623' => 'eca', 'EL10Ac5g10451' => 'bvu', 'EL10Ac5g10453' => 'bvu', 'EL10Ac5g10894' => 'bvu', 'Eucgr.H00192' => 'egr', 'Eucgr.H00193' => 'egr', 'Eucgr.H00194' => 'egr', 'Eucgr.J01562' => 'egr', 'Eucgr.K03301' => 'egr', 'FAN02G0632' => 'fan', 'FAN05G5378' => 'fan', 'FAN09G3247' => 'fan', 'FAN12G0435' => 'fan', 'FAN12G2426' => 'fan', 'FAN14G1707' => 'fan', 'FAN14G4725' => 'fan', 'FAN15G2071' => 'fan', 'FAN17G3065' => 'fan', 'FAN19G1376' => 'fan', 'FAN20G0354' => 'fan', 'FAN20G2429' => 'fan', 'FAN20G2658' => 'fan', 'FAN24G2343' => 'fan', 'FAN27G2362' => 'fan', 'FAN28G1765' => 'fan', 'FvH4_1g16020' => 'fve', 'FvH4_2g04890' => 'fve', 'FvH4_2g22270' => 'fve', 'FvH4_4g02630' => 'fve', 'FvH4_4g02640' => 'fve', 'FvH4_6g02650' => 'fve', 'Glyma.02G140600' => 'gma', 'Glyma.03G159900' => 'gma', 'Glyma.05G234800' => 'gma', 'Glyma.07G269600' => 'gma', 'Glyma.08G042300' => 'gma', 'Glyma.10G033500' => 'gma', 'Glyma.10G185200' => 'gma', 'Glyma.17G004300' => 'gma', 'Glyma.19G161900' => 'gma', 'Glyma.20G205100' => 'gma', 'Glyma.20G205200' => 'gma', 'Gohir.A01G139101' => 'ghi', 'Gohir.A02G035600' => 'ghi', 'Gohir.A02G117901' => 'ghi', 'Gohir.A07G210100' => 'ghi', 'Gohir.A07G210200' => 'ghi', 'Gohir.A08G061100' => 'ghi', 'Gohir.A09G223000' => 'ghi', 'Gohir.A09G223100' => 'ghi', 'Gohir.A10G113900' => 'ghi', 'Gohir.A10G114000' => 'ghi', 'Gohir.D02G042300' => 'ghi', 'Gohir.D07G216100' => 'ghi', 'Gohir.D07G216200' => 'ghi', 'Gohir.D08G070400' => 'ghi', 'Gohir.D09G225000' => 'ghi', 'Gohir.D09G225100' => 'ghi', 'Gohir.D10G152300' => 'ghi', 'Gohir.D10G153200' => 'ghi', 'Gohir.D11G133701' => 'ghi', 'Gorai.004G074100' => 'gra', 'Gorai.005G046800' => 'gra', 'Gorai.006G246500' => 'gra', 'Gorai.006G246600' => 'gra', 'Gorai.007G142900' => 'gra', 'Gorai.011G171000' => 'gra', 'Gorai.011G171100' => 'gra', 'Gorai.013G104300' => 'gra', 'Gorai.013G104400' => 'gra', 'GSVIVG01000754001' => 'vvi', 'GSVIVG01000756001' => 'vvi', 'GSVIVG01010903001' => 'vvi', 'GSVIVG01017623001' => 'vvi', 'GSVIVG01018113001' => 'vvi', 'GSVIVG01018116001' => 'vvi', 'GSVIVG01018118001' => 'vvi', 'HanXRQChr03g0076211' => 'han', 'HanXRQChr03g0092431' => 'han', 'HanXRQChr03g0092441' => 'han', 'HanXRQChr03g0092591' => 'han', 'HanXRQChr03g0092671' => 'han', 'HanXRQChr03g0092681' => 'han', 'HanXRQChr03g0092691' => 'han', 'HanXRQChr03g0092701' => 'han', 'HanXRQChr03g0092721' => 'han', 'HanXRQChr03g0092731' => 'han', 'HanXRQChr04g0113681' => 'han', 'HanXRQChr10g0281371' => 'han', 'HanXRQChr11g0337141' => 'han', 'HanXRQChr13g0424521' => 'han', 'HanXRQChr13g0424531' => 'han', 'HanXRQChr13g0424541' => 'han', 'HanXRQChr16g0498221' => 'han', 'Haze_04377' => 'cav', 'Haze_11298' => 'cav', 'Haze_24547' => 'cav', 'Haze_24550' => 'cav', 'Haze_26587' => 'cav', 'Hma1.2p1_0650F.1_g195410' => 'hma', 'Hma1.2p1_0893F.1_g233470' => 'hma', 'HPP92_006508' => 'vpl', 'HPP92_024780' => 'vpl', 'Hund02688' => 'sun', 'Hund09380' => 'sun', 'Hund09381' => 'sun', 'Hund09832' => 'sun', 'Hund09833' => 'sun', 'Hund11351' => 'sun', 'Hund11513' => 'sun', 'Lalb_Chr06g0162591' => 'lal', 'Lalb_Chr06g0162601' => 'lal', 'Lalb_Chr06g0169321' => 'lal', 'Lalb_Chr09g0330951' => 'lal', 'Lalb_Chr16g0387631' => 'lal', 'Lalb_Chr21g0306241' => 'lal', 'Lalb_Chr25g0290051' => 'lal', 'Lalb_Chr25g0290061' => 'lal', 'Lalb_Chr25g0290071' => 'lal', 'Lj1g0003876' => 'lja', 'Lj1P1207T36' => 'lonja', 'Lj2C1156G12' => 'lonja', 'Lj3A793G39' => 'lonja', 'Lj3C580G2' => 'lonja', 'Lj3C780G2' => 'lonja', 'Lj3C780T4' => 'lonja', 'Lj3C793G9' => 'lonja', 'Lj4g0012960' => 'lja', 'Lj5g0021252' => 'lja', 'Lj5g0021484' => 'lja', 'Lj5g0024528' => 'lja', 'Lj6A399T12' => 'lonja', 'Lj6A656G65' => 'lonja', 'Lsat_1_v5_gn_3_125500' => 'lsa', 'Lsat_1_v5_gn_3_125540' => 'lsa', 'Lsat_1_v5_gn_5_72701' => 'lsa', 'Lsat_1_v5_gn_8_91560' => 'lsa', 'Lsat_1_v5_gn_9_9640' => 'lsa', 'Manes.01G200600' => 'mes', 'Manes.01G200700' => 'mes', 'Manes.03G168900' => 'mes', 'Manes.03G169000' => 'mes', 'Manes.05G085801' => 'mes', 'Manes.05G086200' => 'mes', 'Manes.15G036700' => 'mes', 'Manes.15G036900' => 'mes', 'Mapoly0004s0172' => 'mpo', 'Mapoly0023s0001' => 'mpo', 'Mapoly0142s0012' => 'mpo', 'MBI01_g32854_MAGBIO' => 'mbi', 'MBI11_g24427_MAGBIO' => 'mbi', 'MBI11_g47319_MAGBIO' => 'mbi', 'MCO01G433' => 'mco', 'MD00G1187800' => 'mdo', 'MD04G1226500' => 'mdo', 'MD05G1203900' => 'mdo', 'MD10G1191100' => 'mdo', 'MD12G1243500' => 'mdo', 'MD13G1207000' => 'mdo', 'MD13G1207100' => 'mdo', 'MD16G1208600' => 'mdo', 'Medtr1g050352' => 'mtr', 'Medtr1g070385' => 'mtr', 'Medtr1g070450' => 'mtr', 'Medtr1g075200' => 'mtr', 'Medtr1g075250' => 'mtr', 'Medtr1g075260' => 'mtr', 'Medtr1g475250' => 'mtr', 'Medtr4g075450' => 'mtr', 'Medtr7g096300' => 'mtr', 'Medtr8g105110' => 'mtr', 'MELO3C006470.2' => 'cme', 'MELO3C006471.2' => 'cme', 'MELO3C020772.2' => 'cme', 'MELO3C026780.2' => 'cme', 'MELO3C026781.2' => 'cme', 'Migut.D00390' => 'egut', 'Migut.G00435' => 'egut', 'Migut.G00436' => 'egut', 'Migut.G00718' => 'egut', 'MSTRG.21891' => 'ama', 'MSTRG.26910' => 'ama', 'MSTRG.4099' => 'ama', 'MSTRG.9925' => 'ama', 'Nitab4.5_0000165g0010' => 'nta', 'Nitab4.5_0000209g0180' => 'nta', 'Nitab4.5_0000244g0440' => 'nta', 'Nitab4.5_0000525g0220' => 'nta', 'Nitab4.5_0001597g0020' => 'nta', 'Nitab4.5_0001878g0040' => 'nta', 'Nitab4.5_0001878g0060' => 'nta', 'Nitab4.5_0002838g0100' => 'nta', 'Nitab4.5_0002838g0120' => 'nta', 'Nitab4.5_0004798g0030' => 'nta', 'Nitab4.5_0005420g0010' => 'nta', 'Nitab4.5_0005507g0010' => 'nta', 'Nitab4.5_0005574g0020' => 'nta', 'Nitab4.5_0005838g0010' => 'nta', 'Nitab4.5_0010580g0020' => 'nta', 'Nn1g02599' => 'nnu', 'Nn1g02608' => 'nnu', 'Nn3g17742' => 'nnu', 'Nn3g19534' => 'nnu', 'Nn3g19535' => 'nnu', 'Oeu008790.1' => 'oeu', 'Oeu008792.1' => 'oeu', 'Oeu032590.1' => 'oeu', 'Oeu035349.1' => 'oeu', 'Oeu049791.1' => 'oeu', 'Os01g0774500' => 'osa', 'Os03g0628800' => 'osa', 'Os03g0798600' => 'osa', 'Os05g0508800' => 'osa', 'Peaxi162Scf00036g02018' => 'pax', 'Peaxi162Scf00578g00032' => 'pax', 'Peaxi162Scf00578g00317' => 'pax', 'Peaxi162Scf00785g00114' => 'pax', 'Peaxi162Scf00813g00119' => 'pax', 'Peaxi162Scf00906g00227' => 'pax', 'PGR004G0875' => 'pgr', 'PGR004G2424' => 'pgr', 'PGR031G1239' => 'pgr', 'PGR031G2474' => 'pgr', 'PGR044G0423' => 'pgr', 'PGSC0003DMG400001128' => 'stu', 'PGSC0003DMG400007336' => 'stu', 'PGSC0003DMG400016318' => 'stu', 'PGSC0003DMG400016319' => 'stu', 'PGSC0003DMG400018074' => 'stu', 'Phvul.001G157700' => 'pvu', 'Phvul.002G148550' => 'pvu', 'Phvul.002G320200' => 'pvu', 'Phvul.003G089200' => 'pvu', 'Phvul.007G126000' => 'pvu', 'Phvul.007G126100' => 'pvu', 'Phvul.007G178000' => 'pvu', 'Phvul.007G178200' => 'pvu', 'Potri.002G043000' => 'ptr', 'Potri.002G043200' => 'ptr', 'Potri.003G123750' => 'ptr', 'Potri.005G055401' => 'ptr', 'Potri.005G219700' => 'ptr', 'Potri.005G220000' => 'ptr', 'Potri.008G161901' => 'ptr', 'Potri.008G162000' => 'ptr', 'Potri.008G162400' => 'ptr', 'Potri.010G076900' => 'ptr', 'Pp3c12_9180' => 'ppa', 'Pp3c13_19770' => 'ppa', 'Pp3c14_22950' => 'ppa', 'Pp3c16_12160' => 'ppa', 'Pp3c27_7820' => 'ppa', 'Pp3c2_3490' => 'ppa', 'Pp3c3_23700' => 'ppa', 'Pp3c3_36520' => 'ppa', 'Pp3c4_15250' => 'ppa', 'PRCOL_00007002' => 'pco', 'Prupe.1G030600' => 'ppe', 'Prupe.1G030700' => 'ppe', 'Prupe.6G345200' => 'ppe', 'Prupe.8G230300' => 'ppe', 'Prupe.8G230500' => 'ppe', 'Psat3g059600' => 'psa', 'Psat5g200920' => 'psa', 'Psat6g056440' => 'psa', 'Psat6g057360' => 'psa', 'Psat6g134120' => 'psa', 'Psat6g134160' => 'psa', 'Psat7g008640' => 'psa', 'Psat7g185240' => 'psa', 'PSO017G1330' => 'pso', 'PSO063G6097' => 'pso', 'PSO170G0835' => 'pso', 'PSO170G2499' => 'pso', 'PSO210G5058' => 'pso', 'PSO210G6154' => 'pso', 'PSO585G0031' => 'pso', 'PSO832G0264' => 'pso', 'PSO832G4288' => 'pso', 'QL03p027355' => 'qlo', 'QL03p027430' => 'qlo', 'QL04p081380' => 'qlo', 'QL06p015642' => 'qlo', 'QL06p015650' => 'qlo', 'QL06p015686' => 'qlo', 'QL12p042927' => 'qlo', 'QL93p1863_0035' => 'qlo', 'RcHm_v2.0_Chr3g0450581' => 'rch', 'RcHm_v2.0_Chr4g0390371' => 'rch', 'RcHm_v2.0_Chr4g0390381' => 'rch', 'RcHm_v2.0_Chr4g0390491' => 'rch', 'RcHm_v2.0_Chr4g0390501' => 'rch', 'RcHm_v2.0_Chr6g0289231' => 'rch', 'Rhsim04G0190400' => 'rsi', 'Rhsim04G0190500' => 'rsi', 'Rhsim04G0190600' => 'rsi', 'Rhsim13G0031400' => 'rsi', 'Rhsim13G0165600' => 'rsi', 'RhsimUnG0114600' => 'rsi', 'RhsimUnG0114700' => 'rsi', 'Sabra02G0034800' => 'sbr', 'Sabra02G0035100' => 'sbr', 'Sabra05G0168600' => 'sbr', 'Sabra05G0168800' => 'sbr', 'Sabra08G0123700' => 'sbr', 'Sabra10G0031900' => 'sbr', 'Sabra13G0039000' => 'sbr', 'SalBow2G0782' => 'sbo', 'SalBow2G1403' => 'sbo', 'SalBow4G0074' => 'sbo', 'SalBow4G2635' => 'sbo', 'SalBow5G3010' => 'sbo', 'Sc05g0000870' => 'sci', 'Sc05g0000890' => 'sci', 'Sc13g0005000' => 'sci', 'Sc13g0005030' => 'sci', 'Sc19g0003790' => 'sci', 'Sc19g0003800' => 'sci', 'Sed0003467' => 'sed', 'Sed0009355' => 'sed', 'Sed0009894' => 'sed', 'Sed0011972' => 'sed', 'Sed0021483' => 'sed', 'Sed0021750' => 'sed', 'Sed0026279' => 'sed', 'SEGI_05312' => 'sgi', 'SEGI_10112' => 'sgi', 'SEGI_15835' => 'sgi', 'SEGI_30386' => 'sgi', 'SEGI_34122' => 'sgi', 'SEGI_35063' => 'sgi', 'SGA_v2.0_scaffold101G29794' => 'sas', 'SGA_v2.0_scaffold1G00573' => 'sas', 'SGA_v2.0_scaffold79G25637' => 'sas', 'SGA_v2.0_scaffold88G27283' => 'sas', 'SGA_v2.0_scaffold88G27285' => 'sas', 'SGA_v2.0_scaffold88G27331' => 'sas', 'SHI09937' => 'shi', 'SMO119G0302' => 'smo', 'SMO137G0231' => 'smo', 'SMO367G1151' => 'smo', 'Solyc02g082000.3' => 'sly', 'Solyc06g031670.3' => 'sly', 'Solyc06g053810.3' => 'sly', 'Solyc07g025457.1' => 'sly', 'Solyc08g059740.1' => 'sly', 'Solyc08g059750.3' => 'sly', 'Solyc09g083370.3' => 'sly', 'Solyc12g038950.3' => 'sly', 'Sopen02g026630' => 'spe', 'Sopen06g018930' => 'spe', 'Sopen06g018940' => 'spe', 'Sopen08g009460' => 'spe', 'Sopen09g032290' => 'spe', 'Sp1g03080' => 'spa', 'Sp1g03090' => 'spa', 'Sp1g05480' => 'spa', 'Sp2g07860' => 'spa', 'Sp2g08430' => 'spa', 'Sp2g08440' => 'spa', 'Sp2g26200' => 'spa', 'Sp4g13170' => 'spa', 'Sp6g33840' => 'spa', 'SpUn1204_0010' => 'spa', 'TAR365G0908' => 'tar', 'TAR381G1270' => 'tar', 'TAR381G1651' => 'tar', 'TAR625G1131' => 'tar', 'TAR633G0962' => 'tar', 'TAR633G1729' => 'tar', 'TAR633G1864' => 'tar', 'TAR636G0221' => 'tar', 'TAR636G0314' => 'tar', 'TAR636G3202' => 'tar', 'THA.LOC104800805' => 'tha', 'THA.LOC104801096' => 'tha', 'THA.LOC104801555' => 'tha', 'THA.LOC104808491' => 'tha', 'THA.LOC104808595' => 'tha', 'THA.LOC104815985' => 'tha', 'THA.LOC104822250' => 'tha', 'THA.LOC104826071' => 'tha', 'Thecc.01G265200' => 'tca', 'Thecc.01G265300' => 'tca', 'Thecc.01G265700' => 'tca', 'Thecc.03G109100' => 'tca', 'Thecc.04G245900' => 'tca', 'Thecc.04G246000' => 'tca', 'Thhalv10003334m.g' => 'esa', 'Thhalv10005508m.g' => 'esa', 'Thhalv10005643m.g' => 'esa', 'Thhalv10007316m.g' => 'esa', 'Thhalv10009006m.g' => 'esa', 'Thhalv10009309m.g' => 'esa', 'Thhalv10014917m.g' => 'esa', 'Thhalv10014919m.g' => 'esa', 'Thhalv10015393m.g' => 'esa', 'Thhalv10016515m.g' => 'esa', 'Thhalv10029242m.g' => 'esa', 'TPR.G16654' => 'tpr', 'TPR.G20589' => 'tpr', 'TPR.G23029' => 'tpr', 'TPR.G27731' => 'tpr', 'TPR.G28889' => 'tpr', 'TPR.G28899' => 'tpr', 'TPR.G30846' => 'tpr', 'TPR.G5452' => 'tpr', 'TPR.G5713' => 'tpr', 'TPR.G9046' => 'tpr', 'TPR.G9061' => 'tpr', 'TWI09G1075' => 'twi', 'TWI12G0806' => 'twi', 'TWI18G0108' => 'twi', 'TWI53G1361' => 'twi', 'TWI73G0185' => 'twi', 'TWI73G0427' => 'twi', 'unitig_37.g12001' => 'ugi', 'unitig_747.g21660' => 'ugi', 'unitig_748.g7232' => 'ugi', 'unitig_748.g7315' => 'ugi', 'unitig_85.g27262' => 'ugi', 'unitig_92.g28220' => 'ugi', 'vmacro02632' => 'vma', 'vmacro08410' => 'vma', 'vmacro08411' => 'vma', 'vmacro15407' => 'vma', 'VMungo0251G3619' => 'vmu', 'VMungo0720G1204' => 'vmu', 'VMungo0720G1918' => 'vmu', 'VMungo0720G2387' => 'vmu', 'VMungo0720G2961' => 'vmu', 'VMungo1215G2154' => 'vmu', 'VMungo1383G2411' => 'vmu', 'Zm00001eb051130' => 'zma', 'Zm00001eb116830' => 'zma', 'Zm00001eb116850' => 'zma', 'Zm00001eb151740' => 'zma', 'Zm00001eb292360' => 'zma', 'Zm00001eb301640' => 'zma' ), 'gf_id' => 'HOM05D000856', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000856' ), 'data_identifier' => 'HOM05D000856', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000856', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p00010' => 'bna', 'A03p04160' => 'bna', 'A03p17160' => 'bna', 'A04p23370' => 'bna', 'A05p14860' => 'bna', 'A08p37020' => 'bna', 'A09p08050' => 'bna', 'A09p66800' => 'bna', 'A09p67940' => 'bna', 'A10p02680' => 'bna', 'A10p05320' => 'bna', 'Aa31LG1G20560' => 'aar', 'Aa31LG1G20610' => 'aar', 'Aa31LG1G7810' => 'aar', 'Aa31LG5G3590' => 'aar', 'Aa31LG5G6140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3819' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4683' => 'aag', 'Actinidia04480' => 'ach', 'Actinidia05466' => 'ach', 'Actinidia08445' => 'ach', 'Actinidia21170' => 'ach', 'Actinidia24812' => 'ach', 'Actinidia24951' => 'ach', 'Actinidia40088' => 'ach', 'Ah.02g111660' => 'amhyb', 'Ah.11g048900' => 'amhyb', 'Ah.11g049910' => 'amhyb', 'AL1G13870' => 'aly', 'AL1G13880' => 'aly', 'AL1G16760' => 'aly', 'AL390U10020' => 'aly', 'AL4G25520' => 'aly', 'AL6G19890' => 'aly', 'AL6G19900' => 'aly', 'AL6G19910' => 'aly', 'AL8G40100' => 'aly', 'Aqoxy2G03562' => 'aox', 'Aqoxy5G00316' => 'aox', 'Aqoxy5G00926' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1628KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1H403S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2FU6SJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.882I6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8YRY2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YN1SN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AF70II' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZA8L1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F916KL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHRD8H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KTZ8QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S22EMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8M29T' => 'arhy', 'AT1G04270' => 'ath', 'AT1G04280' => 'ath', 'AT1G06750' => 'ath', 'AT1G33850' => 'ath', 'AT2G30630' => 'ath', 'AT5G09490' => 'ath', 'AT5G09500' => 'ath', 'AT5G09510' => 'ath', 'AT5G43640' => 'ath', 'AT5G63070' => 'ath', 'ATR0605G315' => 'atr', 'Atru.chr11.175' => 'acertr', 'Atru.chr11.653' => 'acertr', 'Atru.chr3.1616' => 'acertr', 'Atru.chr4.2230' => 'acertr', 'Atru.chr4.2232' => 'acertr', 'Atru.chr5.1598' => 'acertr', 'Atru.chr5.1600' => 'acertr', 'Atru.chr5.2188' => 'acertr', 'AUR62008326' => 'cqu', 'AUR62011922' => 'cqu', 'AUR62011924' => 'cqu', 'AUR62021771' => 'cqu', 'AUR62032237' => 'cqu', 'AUR62032240' => 'cqu', 'BcaB01g05572' => 'bca', 'BcaB02g10337' => 'bca', 'BcaB04g19944' => 'bca', 'BcaB05g21548' => 'bca', 'BcaB05g21549' => 'bca', 'BcaB05g23227' => 'bca', 'BcaB06g26256' => 'bca', 'BcaB06g26257' => 'bca', 'BcaB06g28379' => 'bca', 'BcaC02g11159' => 'bca', 'BcaC03g13258' => 'bca', 'BcaC03g13259' => 'bca', 'BcaC05g24456' => 'bca', 'BcaC05g24457' => 'bca', 'BcaC07g36922' => 'bca', 'BcaC07g36923' => 'bca', 'BcaC07g42050' => 'bca', 'BcaC07g42176' => 'bca', 'BcaC07g42195' => 'bca', 'BcaC07g42196' => 'bca', 'BcaNung06674' => 'bca', 'BolC2t06351H' => 'bol', 'BolC2t06352H' => 'bol', 'BolC3t12993H' => 'bol', 'BolC4t23525H' => 'bol', 'BolC4t27475H' => 'bol', 'BolC5t29025H' => 'bol', 'BolC5t29026H' => 'bol', 'BolC8t46898H' => 'bol', 'BolC8t46899H' => 'bol', 'BolC8t52630H' => 'bol', 'BolC8t52765H' => 'bol', 'BolC9t53824H' => 'bol', 'BraA03t09760Z' => 'bra', 'BraA03t10990Z' => 'bra', 'BraA05t20413Z' => 'bra', 'BraA08t35602Z' => 'bra', 'BraA09t36458Z' => 'bra', 'BraA09t42018Z' => 'bra', 'BraA09t42129Z' => 'bra', 'BraA10t42536Z' => 'bra', 'BraA10t42537Z' => 'bra', 'C01p10690' => 'bna', 'C02p03890' => 'bna', 'C02p03900' => 'bna', 'C03p04620' => 'bna', 'C04p19870' => 'bna', 'C04p59670' => 'bna', 'C05p02460' => 'bna', 'C05p02470' => 'bna', 'C08p00980' => 'bna', 'C08p00990' => 'bna', 'C08p51030' => 'bna', 'C08p52360' => 'bna', 'C09p09120' => 'bna', 'CAN.G19.15' => 'can', 'CAN.G251.10' => 'can', 'CAN.G251.9' => 'can', 'CAN.G398.24' => 'can', 'CAN.G410.32' => 'can', 'CAN.G881.2' => 'can', 'CANSAT01G3025' => 'cansat', 'CANSAT78G1211' => 'cansat', 'CANSAT78G1218' => 'cansat', 'CANSAT78G1521' => 'cansat', 'CANSAT78G1670' => 'cansat', 'CARHR003600' => 'chi', 'CARHR003610' => 'chi', 'CARHR006290' => 'chi', 'CARHR006430' => 'chi', 'CARHR124110' => 'chi', 'CARHR203870' => 'chi', 'CARHR203880' => 'chi', 'CARHR203890' => 'chi', 'CARHR276880' => 'chi', 'Carub.0001s0346' => 'cru', 'Carub.0001s0347' => 'cru', 'Carub.0001s0607' => 'cru', 'Carub.0003s2768' => 'cru', 'Carub.0003s2769' => 'cru', 'Carub.0004s1178' => 'cru', 'Carub.0006s0806' => 'cru', 'Carub.0006s0807' => 'cru', 'Carub.0006s0808' => 'cru', 'Carub.0008s0501' => 'cru', 'Carub.0008s2379' => 'cru', 'Ca_08655_v3' => 'car', 'Ca_08922_v3' => 'car', 'Ca_08923_v3' => 'car', 'Ca_09119_v3' => 'car', 'Ca_09703_v3' => 'car', 'Ca_09705_v3' => 'car', 'Ca_09835_v3' => 'car', 'Ca_26403_v3' => 'car', 'Ca_30719_v3' => 'car', 'CBR_g17958' => 'cbr', 'CBR_g40516' => 'cbr', 'Cc00_g05350' => 'ccan', 'Cc01_g18690' => 'ccan', 'Cc03_g04830' => 'ccan', 'Cc03_g04850' => 'ccan', 'CDE02G4469' => 'cde', 'CDE06G0883' => 'cde', 'CDE06G1295' => 'cde', 'CDE06G1390' => 'cde', 'CDE07G0584' => 'cde', 'CDE07G1084' => 'cde', 'CDE08G1259' => 'cde', 'Cfa002341' => 'cfa', 'Cfa024337' => 'cfa', 'Ciclev10004749m.g' => 'ccl', 'Ciclev10006127m.g' => 'ccl', 'Ciclev10019720m.g' => 'ccl', 'Ciclev10022652m.g' => 'ccl', 'CiPaw.01G190400' => 'cil', 'CiPaw.01G190500' => 'cil', 'CiPaw.02G116400' => 'cil', 'CiPaw.02G116500' => 'cil', 'CiPaw.04G183000' => 'cil', 'CiPaw.04G183300' => 'cil', 'ClCG05G004610' => 'cla', 'ClCG05G004620' => 'cla', 'ClCG06G006730' => 'cla', 'ClCG06G006740' => 'cla', 'ClCG11G003690' => 'cla', 'COL.COLO4_08276' => 'col', 'COL.COLO4_08277' => 'col', 'COL.COLO4_15787' => 'col', 'COL.COLO4_15789' => 'col', 'Cpa.g.c44815' => 'cpa', 'Cpa.g.sc52.144' => 'cpa', 'Cpa.g.sc58.46' => 'cpa', 'Cpa.g.sc58.47' => 'cpa', 'Cre08.g360900' => 'cre', 'CsaV3_2G013030' => 'csa', 'CsaV3_2G013050' => 'csa', 'CsaV3_2G015620' => 'csa', 'CsaV3_3G012590' => 'csa', 'CsaV3_3G012600' => 'csa', 'CSS0001641' => 'camsi', 'CSS0008310' => 'camsi', 'CSS0013011' => 'camsi', 'CSS0017147' => 'camsi', 'CSS0022970' => 'camsi', 'CSS0025655' => 'camsi', 'CSS0028665' => 'camsi', 'CSS0029117' => 'camsi', 'CSS0032024' => 'camsi', 'CSS0039681' => 'camsi', 'CSS0046516' => 'camsi', 'CSS0050307' => 'camsi', 'DCAR_005871' => 'dca', 'DCAR_007342' => 'dca', 'DCAR_024228' => 'dca', 'DCAR_027277' => 'dca', 'DCAR_030718' => 'dca', 'Dinv20287' => 'din', 'Dinv22461' => 'din', 'Dinv22464' => 'din', 'Dinv29912' => 'din', 'Dinv29913' => 'din', 'Dinv34580' => 'din', 'Dinv34582' => 'din', 'Dinv44632' => 'din', 'Duzib052G0266' => 'dzi', 'Duzib133G0907' => 'dzi', 'Duzib133G1034' => 'dzi', 'Duzib138G0207' => 'dzi', 'Duzib138G0491' => 'dzi', 'Duzib151G0812' => 'dzi', 'Duzib151G1166' => 'dzi', 'Duzib168G0192' => 'dzi', 'Duzib211G0077' => 'dzi', 'Duzib212G0429' => 'dzi', 'Duzib212G0472' => 'dzi', 'ECA233G2617' => 'eca', 'ECA236G4188' => 'eca', 'ECA240G0936' => 'eca', 'ECA240G1129' => 'eca', 'ECA247G0623' => 'eca', 'EL10Ac5g10451' => 'bvu', 'EL10Ac5g10453' => 'bvu', 'EL10Ac5g10894' => 'bvu', 'Eucgr.H00192' => 'egr', 'Eucgr.H00193' => 'egr', 'Eucgr.H00194' => 'egr', 'Eucgr.J01562' => 'egr', 'Eucgr.K03301' => 'egr', 'FAN02G0632' => 'fan', 'FAN05G5378' => 'fan', 'FAN09G3247' => 'fan', 'FAN12G0435' => 'fan', 'FAN12G2426' => 'fan', 'FAN14G1707' => 'fan', 'FAN14G4725' => 'fan', 'FAN15G2071' => 'fan', 'FAN17G3065' => 'fan', 'FAN19G1376' => 'fan', 'FAN20G0354' => 'fan', 'FAN20G2429' => 'fan', 'FAN20G2658' => 'fan', 'FAN24G2343' => 'fan', 'FAN27G2362' => 'fan', 'FAN28G1765' => 'fan', 'FvH4_1g16020' => 'fve', 'FvH4_2g04890' => 'fve', 'FvH4_2g22270' => 'fve', 'FvH4_4g02630' => 'fve', 'FvH4_4g02640' => 'fve', 'FvH4_6g02650' => 'fve', 'Glyma.02G140600' => 'gma', 'Glyma.03G159900' => 'gma', 'Glyma.05G234800' => 'gma', 'Glyma.07G269600' => 'gma', 'Glyma.08G042300' => 'gma', 'Glyma.10G033500' => 'gma', 'Glyma.10G185200' => 'gma', 'Glyma.17G004300' => 'gma', 'Glyma.19G161900' => 'gma', 'Glyma.20G205100' => 'gma', 'Glyma.20G205200' => 'gma', 'Gohir.A01G139101' => 'ghi', 'Gohir.A02G035600' => 'ghi', 'Gohir.A02G117901' => 'ghi', 'Gohir.A07G210100' => 'ghi', 'Gohir.A07G210200' => 'ghi', 'Gohir.A08G061100' => 'ghi', 'Gohir.A09G223000' => 'ghi', 'Gohir.A09G223100' => 'ghi', 'Gohir.A10G113900' => 'ghi', 'Gohir.A10G114000' => 'ghi', 'Gohir.D02G042300' => 'ghi', 'Gohir.D07G216100' => 'ghi', 'Gohir.D07G216200' => 'ghi', 'Gohir.D08G070400' => 'ghi', 'Gohir.D09G225000' => 'ghi', 'Gohir.D09G225100' => 'ghi', 'Gohir.D10G152300' => 'ghi', 'Gohir.D10G153200' => 'ghi', 'Gohir.D11G133701' => 'ghi', 'Gorai.004G074100' => 'gra', 'Gorai.005G046800' => 'gra', 'Gorai.006G246500' => 'gra', 'Gorai.006G246600' => 'gra', 'Gorai.007G142900' => 'gra', 'Gorai.011G171000' => 'gra', 'Gorai.011G171100' => 'gra', 'Gorai.013G104300' => 'gra', 'Gorai.013G104400' => 'gra', 'GSVIVG01000754001' => 'vvi', 'GSVIVG01000756001' => 'vvi', 'GSVIVG01010903001' => 'vvi', 'GSVIVG01017623001' => 'vvi', 'GSVIVG01018113001' => 'vvi', 'GSVIVG01018116001' => 'vvi', 'GSVIVG01018118001' => 'vvi', 'HanXRQChr03g0076211' => 'han', 'HanXRQChr03g0092431' => 'han', 'HanXRQChr03g0092441' => 'han', 'HanXRQChr03g0092591' => 'han', 'HanXRQChr03g0092671' => 'han', 'HanXRQChr03g0092681' => 'han', 'HanXRQChr03g0092691' => 'han', 'HanXRQChr03g0092701' => 'han', 'HanXRQChr03g0092721' => 'han', 'HanXRQChr03g0092731' => 'han', 'HanXRQChr04g0113681' => 'han', 'HanXRQChr10g0281371' => 'han', 'HanXRQChr11g0337141' => 'han', 'HanXRQChr13g0424521' => 'han', 'HanXRQChr13g0424531' => 'han', 'HanXRQChr13g0424541' => 'han', 'HanXRQChr16g0498221' => 'han', 'Haze_04377' => 'cav', 'Haze_11298' => 'cav', 'Haze_24547' => 'cav', 'Haze_24550' => 'cav', 'Haze_26587' => 'cav', 'Hma1.2p1_0650F.1_g195410' => 'hma', 'Hma1.2p1_0893F.1_g233470' => 'hma', 'HPP92_006508' => 'vpl', 'HPP92_024780' => 'vpl', 'Hund02688' => 'sun', 'Hund09380' => 'sun', 'Hund09381' => 'sun', 'Hund09832' => 'sun', 'Hund09833' => 'sun', 'Hund11351' => 'sun', 'Hund11513' => 'sun', 'Lalb_Chr06g0162591' => 'lal', 'Lalb_Chr06g0162601' => 'lal', 'Lalb_Chr06g0169321' => 'lal', 'Lalb_Chr09g0330951' => 'lal', 'Lalb_Chr16g0387631' => 'lal', 'Lalb_Chr21g0306241' => 'lal', 'Lalb_Chr25g0290051' => 'lal', 'Lalb_Chr25g0290061' => 'lal', 'Lalb_Chr25g0290071' => 'lal', 'Lj1g0003876' => 'lja', 'Lj1P1207T36' => 'lonja', 'Lj2C1156G12' => 'lonja', 'Lj3A793G39' => 'lonja', 'Lj3C580G2' => 'lonja', 'Lj3C780G2' => 'lonja', 'Lj3C780T4' => 'lonja', 'Lj3C793G9' => 'lonja', 'Lj4g0012960' => 'lja', 'Lj5g0021252' => 'lja', 'Lj5g0021484' => 'lja', 'Lj5g0024528' => 'lja', 'Lj6A399T12' => 'lonja', 'Lj6A656G65' => 'lonja', 'Lsat_1_v5_gn_3_125500' => 'lsa', 'Lsat_1_v5_gn_3_125540' => 'lsa', 'Lsat_1_v5_gn_5_72701' => 'lsa', 'Lsat_1_v5_gn_8_91560' => 'lsa', 'Lsat_1_v5_gn_9_9640' => 'lsa', 'Manes.01G200600' => 'mes', 'Manes.01G200700' => 'mes', 'Manes.03G168900' => 'mes', 'Manes.03G169000' => 'mes', 'Manes.05G085801' => 'mes', 'Manes.05G086200' => 'mes', 'Manes.15G036700' => 'mes', 'Manes.15G036900' => 'mes', 'Mapoly0004s0172' => 'mpo', 'Mapoly0023s0001' => 'mpo', 'Mapoly0142s0012' => 'mpo', 'MBI01_g32854_MAGBIO' => 'mbi', 'MBI11_g24427_MAGBIO' => 'mbi', 'MBI11_g47319_MAGBIO' => 'mbi', 'MCO01G433' => 'mco', 'MD00G1187800' => 'mdo', 'MD04G1226500' => 'mdo', 'MD05G1203900' => 'mdo', 'MD10G1191100' => 'mdo', 'MD12G1243500' => 'mdo', 'MD13G1207000' => 'mdo', 'MD13G1207100' => 'mdo', 'MD16G1208600' => 'mdo', 'Medtr1g050352' => 'mtr', 'Medtr1g070385' => 'mtr', 'Medtr1g070450' => 'mtr', 'Medtr1g075200' => 'mtr', 'Medtr1g075250' => 'mtr', 'Medtr1g075260' => 'mtr', 'Medtr1g475250' => 'mtr', 'Medtr4g075450' => 'mtr', 'Medtr7g096300' => 'mtr', 'Medtr8g105110' => 'mtr', 'MELO3C006470.2' => 'cme', 'MELO3C006471.2' => 'cme', 'MELO3C020772.2' => 'cme', 'MELO3C026780.2' => 'cme', 'MELO3C026781.2' => 'cme', 'Migut.D00390' => 'egut', 'Migut.G00435' => 'egut', 'Migut.G00436' => 'egut', 'Migut.G00718' => 'egut', 'MSTRG.21891' => 'ama', 'MSTRG.26910' => 'ama', 'MSTRG.4099' => 'ama', 'MSTRG.9925' => 'ama', 'Nitab4.5_0000165g0010' => 'nta', 'Nitab4.5_0000209g0180' => 'nta', 'Nitab4.5_0000244g0440' => 'nta', 'Nitab4.5_0000525g0220' => 'nta', 'Nitab4.5_0001597g0020' => 'nta', 'Nitab4.5_0001878g0040' => 'nta', 'Nitab4.5_0001878g0060' => 'nta', 'Nitab4.5_0002838g0100' => 'nta', 'Nitab4.5_0002838g0120' => 'nta', 'Nitab4.5_0004798g0030' => 'nta', 'Nitab4.5_0005420g0010' => 'nta', 'Nitab4.5_0005507g0010' => 'nta', 'Nitab4.5_0005574g0020' => 'nta', 'Nitab4.5_0005838g0010' => 'nta', 'Nitab4.5_0010580g0020' => 'nta', 'Nn1g02599' => 'nnu', 'Nn1g02608' => 'nnu', 'Nn3g17742' => 'nnu', 'Nn3g19534' => 'nnu', 'Nn3g19535' => 'nnu', 'Oeu008790.1' => 'oeu', 'Oeu008792.1' => 'oeu', 'Oeu032590.1' => 'oeu', 'Oeu035349.1' => 'oeu', 'Oeu049791.1' => 'oeu', 'Os01g0774500' => 'osa', 'Os03g0628800' => 'osa', 'Os03g0798600' => 'osa', 'Os05g0508800' => 'osa', 'Peaxi162Scf00036g02018' => 'pax', 'Peaxi162Scf00578g00032' => 'pax', 'Peaxi162Scf00578g00317' => 'pax', 'Peaxi162Scf00785g00114' => 'pax', 'Peaxi162Scf00813g00119' => 'pax', 'Peaxi162Scf00906g00227' => 'pax', 'PGR004G0875' => 'pgr', 'PGR004G2424' => 'pgr', 'PGR031G1239' => 'pgr', 'PGR031G2474' => 'pgr', 'PGR044G0423' => 'pgr', 'PGSC0003DMG400001128' => 'stu', 'PGSC0003DMG400007336' => 'stu', 'PGSC0003DMG400016318' => 'stu', 'PGSC0003DMG400016319' => 'stu', 'PGSC0003DMG400018074' => 'stu', 'Phvul.001G157700' => 'pvu', 'Phvul.002G148550' => 'pvu', 'Phvul.002G320200' => 'pvu', 'Phvul.003G089200' => 'pvu', 'Phvul.007G126000' => 'pvu', 'Phvul.007G126100' => 'pvu', 'Phvul.007G178000' => 'pvu', 'Phvul.007G178200' => 'pvu', 'Potri.002G043000' => 'ptr', 'Potri.002G043200' => 'ptr', 'Potri.003G123750' => 'ptr', 'Potri.005G055401' => 'ptr', 'Potri.005G219700' => 'ptr', 'Potri.005G220000' => 'ptr', 'Potri.008G161901' => 'ptr', 'Potri.008G162000' => 'ptr', 'Potri.008G162400' => 'ptr', 'Potri.010G076900' => 'ptr', 'Pp3c12_9180' => 'ppa', 'Pp3c13_19770' => 'ppa', 'Pp3c14_22950' => 'ppa', 'Pp3c16_12160' => 'ppa', 'Pp3c27_7820' => 'ppa', 'Pp3c2_3490' => 'ppa', 'Pp3c3_23700' => 'ppa', 'Pp3c3_36520' => 'ppa', 'Pp3c4_15250' => 'ppa', 'PRCOL_00007002' => 'pco', 'Prupe.1G030600' => 'ppe', 'Prupe.1G030700' => 'ppe', 'Prupe.6G345200' => 'ppe', 'Prupe.8G230300' => 'ppe', 'Prupe.8G230500' => 'ppe', 'Psat3g059600' => 'psa', 'Psat5g200920' => 'psa', 'Psat6g056440' => 'psa', 'Psat6g057360' => 'psa', 'Psat6g134120' => 'psa', 'Psat6g134160' => 'psa', 'Psat7g008640' => 'psa', 'Psat7g185240' => 'psa', 'PSO017G1330' => 'pso', 'PSO063G6097' => 'pso', 'PSO170G0835' => 'pso', 'PSO170G2499' => 'pso', 'PSO210G5058' => 'pso', 'PSO210G6154' => 'pso', 'PSO585G0031' => 'pso', 'PSO832G0264' => 'pso', 'PSO832G4288' => 'pso', 'QL03p027355' => 'qlo', 'QL03p027430' => 'qlo', 'QL04p081380' => 'qlo', 'QL06p015642' => 'qlo', 'QL06p015650' => 'qlo', 'QL06p015686' => 'qlo', 'QL12p042927' => 'qlo', 'QL93p1863_0035' => 'qlo', 'RcHm_v2.0_Chr3g0450581' => 'rch', 'RcHm_v2.0_Chr4g0390371' => 'rch', 'RcHm_v2.0_Chr4g0390381' => 'rch', 'RcHm_v2.0_Chr4g0390491' => 'rch', 'RcHm_v2.0_Chr4g0390501' => 'rch', 'RcHm_v2.0_Chr6g0289231' => 'rch', 'Rhsim04G0190400' => 'rsi', 'Rhsim04G0190500' => 'rsi', 'Rhsim04G0190600' => 'rsi', 'Rhsim13G0031400' => 'rsi', 'Rhsim13G0165600' => 'rsi', 'RhsimUnG0114600' => 'rsi', 'RhsimUnG0114700' => 'rsi', 'Sabra02G0034800' => 'sbr', 'Sabra02G0035100' => 'sbr', 'Sabra05G0168600' => 'sbr', 'Sabra05G0168800' => 'sbr', 'Sabra08G0123700' => 'sbr', 'Sabra10G0031900' => 'sbr', 'Sabra13G0039000' => 'sbr', 'SalBow2G0782' => 'sbo', 'SalBow2G1403' => 'sbo', 'SalBow4G0074' => 'sbo', 'SalBow4G2635' => 'sbo', 'SalBow5G3010' => 'sbo', 'Sc05g0000870' => 'sci', 'Sc05g0000890' => 'sci', 'Sc13g0005000' => 'sci', 'Sc13g0005030' => 'sci', 'Sc19g0003790' => 'sci', 'Sc19g0003800' => 'sci', 'Sed0003467' => 'sed', 'Sed0009355' => 'sed', 'Sed0009894' => 'sed', 'Sed0011972' => 'sed', 'Sed0021483' => 'sed', 'Sed0021750' => 'sed', 'Sed0026279' => 'sed', 'SEGI_05312' => 'sgi', 'SEGI_10112' => 'sgi', 'SEGI_15835' => 'sgi', 'SEGI_30386' => 'sgi', 'SEGI_34122' => 'sgi', 'SEGI_35063' => 'sgi', 'SGA_v2.0_scaffold101G29794' => 'sas', 'SGA_v2.0_scaffold1G00573' => 'sas', 'SGA_v2.0_scaffold79G25637' => 'sas', 'SGA_v2.0_scaffold88G27283' => 'sas', 'SGA_v2.0_scaffold88G27285' => 'sas', 'SGA_v2.0_scaffold88G27331' => 'sas', 'SHI09937' => 'shi', 'SMO119G0302' => 'smo', 'SMO137G0231' => 'smo', 'SMO367G1151' => 'smo', 'Solyc02g082000.3' => 'sly', 'Solyc06g031670.3' => 'sly', 'Solyc06g053810.3' => 'sly', 'Solyc07g025457.1' => 'sly', 'Solyc08g059740.1' => 'sly', 'Solyc08g059750.3' => 'sly', 'Solyc09g083370.3' => 'sly', 'Solyc12g038950.3' => 'sly', 'Sopen02g026630' => 'spe', 'Sopen06g018930' => 'spe', 'Sopen06g018940' => 'spe', 'Sopen08g009460' => 'spe', 'Sopen09g032290' => 'spe', 'Sp1g03080' => 'spa', 'Sp1g03090' => 'spa', 'Sp1g05480' => 'spa', 'Sp2g07860' => 'spa', 'Sp2g08430' => 'spa', 'Sp2g08440' => 'spa', 'Sp2g26200' => 'spa', 'Sp4g13170' => 'spa', 'Sp6g33840' => 'spa', 'SpUn1204_0010' => 'spa', 'TAR365G0908' => 'tar', 'TAR381G1270' => 'tar', 'TAR381G1651' => 'tar', 'TAR625G1131' => 'tar', 'TAR633G0962' => 'tar', 'TAR633G1729' => 'tar', 'TAR633G1864' => 'tar', 'TAR636G0221' => 'tar', 'TAR636G0314' => 'tar', 'TAR636G3202' => 'tar', 'THA.LOC104800805' => 'tha', 'THA.LOC104801096' => 'tha', 'THA.LOC104801555' => 'tha', 'THA.LOC104808491' => 'tha', 'THA.LOC104808595' => 'tha', 'THA.LOC104815985' => 'tha', 'THA.LOC104822250' => 'tha', 'THA.LOC104826071' => 'tha', 'Thecc.01G265200' => 'tca', 'Thecc.01G265300' => 'tca', 'Thecc.01G265700' => 'tca', 'Thecc.03G109100' => 'tca', 'Thecc.04G245900' => 'tca', 'Thecc.04G246000' => 'tca', 'Thhalv10003334m.g' => 'esa', 'Thhalv10005508m.g' => 'esa', 'Thhalv10005643m.g' => 'esa', 'Thhalv10007316m.g' => 'esa', 'Thhalv10009006m.g' => 'esa', 'Thhalv10009309m.g' => 'esa', 'Thhalv10014917m.g' => 'esa', 'Thhalv10014919m.g' => 'esa', 'Thhalv10015393m.g' => 'esa', 'Thhalv10016515m.g' => 'esa', 'Thhalv10029242m.g' => 'esa', 'TPR.G16654' => 'tpr', 'TPR.G20589' => 'tpr', 'TPR.G23029' => 'tpr', 'TPR.G27731' => 'tpr', 'TPR.G28889' => 'tpr', 'TPR.G28899' => 'tpr', 'TPR.G30846' => 'tpr', 'TPR.G5452' => 'tpr', 'TPR.G5713' => 'tpr', 'TPR.G9046' => 'tpr', 'TPR.G9061' => 'tpr', 'TWI09G1075' => 'twi', 'TWI12G0806' => 'twi', 'TWI18G0108' => 'twi', 'TWI53G1361' => 'twi', 'TWI73G0185' => 'twi', 'TWI73G0427' => 'twi', 'unitig_37.g12001' => 'ugi', 'unitig_747.g21660' => 'ugi', 'unitig_748.g7232' => 'ugi', 'unitig_748.g7315' => 'ugi', 'unitig_85.g27262' => 'ugi', 'unitig_92.g28220' => 'ugi', 'vmacro02632' => 'vma', 'vmacro08410' => 'vma', 'vmacro08411' => 'vma', 'vmacro15407' => 'vma', 'VMungo0251G3619' => 'vmu', 'VMungo0720G1204' => 'vmu', 'VMungo0720G1918' => 'vmu', 'VMungo0720G2387' => 'vmu', 'VMungo0720G2961' => 'vmu', 'VMungo1215G2154' => 'vmu', 'VMungo1383G2411' => 'vmu', 'Zm00001eb051130' => 'zma', 'Zm00001eb116830' => 'zma', 'Zm00001eb116850' => 'zma', 'Zm00001eb151740' => 'zma', 'Zm00001eb292360' => 'zma', 'Zm00001eb301640' => 'zma' ) $gf_id = 'HOM05D000856' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000856' ) $data_identifier = 'HOM05D000856' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 13, 'ath' => (int) 10, 'atr' => (int) 1, 'acertr' => (int) 8, 'cqu' => (int) 6, 'bca' => (int) 21, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 11, 'car' => (int) 9, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 8, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 5, 'fan' => (int) 16, 'fve' => (int) 6, 'gma' => (int) 11, 'ghi' => (int) 19, 'gra' => (int) 9, 'vvi' => (int) 7, 'han' => (int) 17, 'cav' => (int) 5, 'hma' => (int) 2, 'vpl' => (int) 2, 'sun' => (int) 7, 'lal' => (int) 9, 'lja' => (int) 5, 'lonja' => (int) 9, 'lsa' => (int) 5, 'mes' => (int) 8, 'mpo' => (int) 3, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 10, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 15, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 9, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 9, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 6, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 5, 'spa' => (int) 10, 'tar' => (int) 10, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 11, 'tpr' => (int) 11, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 4, 'vmu' => (int) 7, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb301640' $species_info = array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ) $local_species = 'sbr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000856', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p00010' => 'bna', 'A03p04160' => 'bna', 'A03p17160' => 'bna', 'A04p23370' => 'bna', 'A05p14860' => 'bna', 'A08p37020' => 'bna', 'A09p08050' => 'bna', 'A09p66800' => 'bna', 'A09p67940' => 'bna', 'A10p02680' => 'bna', 'A10p05320' => 'bna', 'Aa31LG1G20560' => 'aar', 'Aa31LG1G20610' => 'aar', 'Aa31LG1G7810' => 'aar', 'Aa31LG5G3590' => 'aar', 'Aa31LG5G6140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3819' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4683' => 'aag', 'Actinidia04480' => 'ach', 'Actinidia05466' => 'ach', 'Actinidia08445' => 'ach', 'Actinidia21170' => 'ach', 'Actinidia24812' => 'ach', 'Actinidia24951' => 'ach', 'Actinidia40088' => 'ach', 'Ah.02g111660' => 'amhyb', 'Ah.11g048900' => 'amhyb', 'Ah.11g049910' => 'amhyb', 'AL1G13870' => 'aly', 'AL1G13880' => 'aly', 'AL1G16760' => 'aly', 'AL390U10020' => 'aly', 'AL4G25520' => 'aly', 'AL6G19890' => 'aly', 'AL6G19900' => 'aly', 'AL6G19910' => 'aly', 'AL8G40100' => 'aly', 'Aqoxy2G03562' => 'aox', 'Aqoxy5G00316' => 'aox', 'Aqoxy5G00926' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1628KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1H403S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2FU6SJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.882I6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8YRY2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YN1SN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AF70II' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZA8L1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F916KL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHRD8H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KTZ8QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S22EMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8M29T' => 'arhy', 'AT1G04270' => 'ath', 'AT1G04280' => 'ath', 'AT1G06750' => 'ath', 'AT1G33850' => 'ath', 'AT2G30630' => 'ath', 'AT5G09490' => 'ath', 'AT5G09500' => 'ath', 'AT5G09510' => 'ath', 'AT5G43640' => 'ath', 'AT5G63070' => 'ath', 'ATR0605G315' => 'atr', 'Atru.chr11.175' => 'acertr', 'Atru.chr11.653' => 'acertr', 'Atru.chr3.1616' => 'acertr', 'Atru.chr4.2230' => 'acertr', 'Atru.chr4.2232' => 'acertr', 'Atru.chr5.1598' => 'acertr', 'Atru.chr5.1600' => 'acertr', 'Atru.chr5.2188' => 'acertr', 'AUR62008326' => 'cqu', 'AUR62011922' => 'cqu', 'AUR62011924' => 'cqu', 'AUR62021771' => 'cqu', 'AUR62032237' => 'cqu', 'AUR62032240' => 'cqu', 'BcaB01g05572' => 'bca', 'BcaB02g10337' => 'bca', 'BcaB04g19944' => 'bca', 'BcaB05g21548' => 'bca', 'BcaB05g21549' => 'bca', 'BcaB05g23227' => 'bca', 'BcaB06g26256' => 'bca', 'BcaB06g26257' => 'bca', 'BcaB06g28379' => 'bca', 'BcaC02g11159' => 'bca', 'BcaC03g13258' => 'bca', 'BcaC03g13259' => 'bca', 'BcaC05g24456' => 'bca', 'BcaC05g24457' => 'bca', 'BcaC07g36922' => 'bca', 'BcaC07g36923' => 'bca', 'BcaC07g42050' => 'bca', 'BcaC07g42176' => 'bca', 'BcaC07g42195' => 'bca', 'BcaC07g42196' => 'bca', 'BcaNung06674' => 'bca', 'BolC2t06351H' => 'bol', 'BolC2t06352H' => 'bol', 'BolC3t12993H' => 'bol', 'BolC4t23525H' => 'bol', 'BolC4t27475H' => 'bol', 'BolC5t29025H' => 'bol', 'BolC5t29026H' => 'bol', 'BolC8t46898H' => 'bol', 'BolC8t46899H' => 'bol', 'BolC8t52630H' => 'bol', 'BolC8t52765H' => 'bol', 'BolC9t53824H' => 'bol', 'BraA03t09760Z' => 'bra', 'BraA03t10990Z' => 'bra', 'BraA05t20413Z' => 'bra', 'BraA08t35602Z' => 'bra', 'BraA09t36458Z' => 'bra', 'BraA09t42018Z' => 'bra', 'BraA09t42129Z' => 'bra', 'BraA10t42536Z' => 'bra', 'BraA10t42537Z' => 'bra', 'C01p10690' => 'bna', 'C02p03890' => 'bna', 'C02p03900' => 'bna', 'C03p04620' => 'bna', 'C04p19870' => 'bna', 'C04p59670' => 'bna', 'C05p02460' => 'bna', 'C05p02470' => 'bna', 'C08p00980' => 'bna', 'C08p00990' => 'bna', 'C08p51030' => 'bna', 'C08p52360' => 'bna', 'C09p09120' => 'bna', 'CAN.G19.15' => 'can', 'CAN.G251.10' => 'can', 'CAN.G251.9' => 'can', 'CAN.G398.24' => 'can', 'CAN.G410.32' => 'can', 'CAN.G881.2' => 'can', 'CANSAT01G3025' => 'cansat', 'CANSAT78G1211' => 'cansat', 'CANSAT78G1218' => 'cansat', 'CANSAT78G1521' => 'cansat', 'CANSAT78G1670' => 'cansat', 'CARHR003600' => 'chi', 'CARHR003610' => 'chi', 'CARHR006290' => 'chi', 'CARHR006430' => 'chi', 'CARHR124110' => 'chi', 'CARHR203870' => 'chi', 'CARHR203880' => 'chi', 'CARHR203890' => 'chi', 'CARHR276880' => 'chi', 'Carub.0001s0346' => 'cru', 'Carub.0001s0347' => 'cru', 'Carub.0001s0607' => 'cru', 'Carub.0003s2768' => 'cru', 'Carub.0003s2769' => 'cru', 'Carub.0004s1178' => 'cru', 'Carub.0006s0806' => 'cru', 'Carub.0006s0807' => 'cru', 'Carub.0006s0808' => 'cru', 'Carub.0008s0501' => 'cru', 'Carub.0008s2379' => 'cru', 'Ca_08655_v3' => 'car', 'Ca_08922_v3' => 'car', 'Ca_08923_v3' => 'car', 'Ca_09119_v3' => 'car', 'Ca_09703_v3' => 'car', 'Ca_09705_v3' => 'car', 'Ca_09835_v3' => 'car', 'Ca_26403_v3' => 'car', 'Ca_30719_v3' => 'car', 'CBR_g17958' => 'cbr', 'CBR_g40516' => 'cbr', 'Cc00_g05350' => 'ccan', 'Cc01_g18690' => 'ccan', 'Cc03_g04830' => 'ccan', 'Cc03_g04850' => 'ccan', 'CDE02G4469' => 'cde', 'CDE06G0883' => 'cde', 'CDE06G1295' => 'cde', 'CDE06G1390' => 'cde', 'CDE07G0584' => 'cde', 'CDE07G1084' => 'cde', 'CDE08G1259' => 'cde', 'Cfa002341' => 'cfa', 'Cfa024337' => 'cfa', 'Ciclev10004749m.g' => 'ccl', 'Ciclev10006127m.g' => 'ccl', 'Ciclev10019720m.g' => 'ccl', 'Ciclev10022652m.g' => 'ccl', 'CiPaw.01G190400' => 'cil', 'CiPaw.01G190500' => 'cil', 'CiPaw.02G116400' => 'cil', 'CiPaw.02G116500' => 'cil', 'CiPaw.04G183000' => 'cil', 'CiPaw.04G183300' => 'cil', 'ClCG05G004610' => 'cla', 'ClCG05G004620' => 'cla', 'ClCG06G006730' => 'cla', 'ClCG06G006740' => 'cla', 'ClCG11G003690' => 'cla', 'COL.COLO4_08276' => 'col', 'COL.COLO4_08277' => 'col', 'COL.COLO4_15787' => 'col', 'COL.COLO4_15789' => 'col', 'Cpa.g.c44815' => 'cpa', 'Cpa.g.sc52.144' => 'cpa', 'Cpa.g.sc58.46' => 'cpa', 'Cpa.g.sc58.47' => 'cpa', 'Cre08.g360900' => 'cre', 'CsaV3_2G013030' => 'csa', 'CsaV3_2G013050' => 'csa', 'CsaV3_2G015620' => 'csa', 'CsaV3_3G012590' => 'csa', 'CsaV3_3G012600' => 'csa', 'CSS0001641' => 'camsi', 'CSS0008310' => 'camsi', 'CSS0013011' => 'camsi', 'CSS0017147' => 'camsi', 'CSS0022970' => 'camsi', 'CSS0025655' => 'camsi', 'CSS0028665' => 'camsi', 'CSS0029117' => 'camsi', 'CSS0032024' => 'camsi', 'CSS0039681' => 'camsi', 'CSS0046516' => 'camsi', 'CSS0050307' => 'camsi', 'DCAR_005871' => 'dca', 'DCAR_007342' => 'dca', 'DCAR_024228' => 'dca', 'DCAR_027277' => 'dca', 'DCAR_030718' => 'dca', 'Dinv20287' => 'din', 'Dinv22461' => 'din', 'Dinv22464' => 'din', 'Dinv29912' => 'din', 'Dinv29913' => 'din', 'Dinv34580' => 'din', 'Dinv34582' => 'din', 'Dinv44632' => 'din', 'Duzib052G0266' => 'dzi', 'Duzib133G0907' => 'dzi', 'Duzib133G1034' => 'dzi', 'Duzib138G0207' => 'dzi', 'Duzib138G0491' => 'dzi', 'Duzib151G0812' => 'dzi', 'Duzib151G1166' => 'dzi', 'Duzib168G0192' => 'dzi', 'Duzib211G0077' => 'dzi', 'Duzib212G0429' => 'dzi', 'Duzib212G0472' => 'dzi', 'ECA233G2617' => 'eca', 'ECA236G4188' => 'eca', 'ECA240G0936' => 'eca', 'ECA240G1129' => 'eca', 'ECA247G0623' => 'eca', 'EL10Ac5g10451' => 'bvu', 'EL10Ac5g10453' => 'bvu', 'EL10Ac5g10894' => 'bvu', 'Eucgr.H00192' => 'egr', 'Eucgr.H00193' => 'egr', 'Eucgr.H00194' => 'egr', 'Eucgr.J01562' => 'egr', 'Eucgr.K03301' => 'egr', 'FAN02G0632' => 'fan', 'FAN05G5378' => 'fan', 'FAN09G3247' => 'fan', 'FAN12G0435' => 'fan', 'FAN12G2426' => 'fan', 'FAN14G1707' => 'fan', 'FAN14G4725' => 'fan', 'FAN15G2071' => 'fan', 'FAN17G3065' => 'fan', 'FAN19G1376' => 'fan', 'FAN20G0354' => 'fan', 'FAN20G2429' => 'fan', 'FAN20G2658' => 'fan', 'FAN24G2343' => 'fan', 'FAN27G2362' => 'fan', 'FAN28G1765' => 'fan', 'FvH4_1g16020' => 'fve', 'FvH4_2g04890' => 'fve', 'FvH4_2g22270' => 'fve', 'FvH4_4g02630' => 'fve', 'FvH4_4g02640' => 'fve', 'FvH4_6g02650' => 'fve', 'Glyma.02G140600' => 'gma', 'Glyma.03G159900' => 'gma', 'Glyma.05G234800' => 'gma', 'Glyma.07G269600' => 'gma', 'Glyma.08G042300' => 'gma', 'Glyma.10G033500' => 'gma', 'Glyma.10G185200' => 'gma', 'Glyma.17G004300' => 'gma', 'Glyma.19G161900' => 'gma', 'Glyma.20G205100' => 'gma', 'Glyma.20G205200' => 'gma', 'Gohir.A01G139101' => 'ghi', 'Gohir.A02G035600' => 'ghi', 'Gohir.A02G117901' => 'ghi', 'Gohir.A07G210100' => 'ghi', 'Gohir.A07G210200' => 'ghi', 'Gohir.A08G061100' => 'ghi', 'Gohir.A09G223000' => 'ghi', 'Gohir.A09G223100' => 'ghi', 'Gohir.A10G113900' => 'ghi', 'Gohir.A10G114000' => 'ghi', 'Gohir.D02G042300' => 'ghi', 'Gohir.D07G216100' => 'ghi', 'Gohir.D07G216200' => 'ghi', 'Gohir.D08G070400' => 'ghi', 'Gohir.D09G225000' => 'ghi', 'Gohir.D09G225100' => 'ghi', 'Gohir.D10G152300' => 'ghi', 'Gohir.D10G153200' => 'ghi', 'Gohir.D11G133701' => 'ghi', 'Gorai.004G074100' => 'gra', 'Gorai.005G046800' => 'gra', 'Gorai.006G246500' => 'gra', 'Gorai.006G246600' => 'gra', 'Gorai.007G142900' => 'gra', 'Gorai.011G171000' => 'gra', 'Gorai.011G171100' => 'gra', 'Gorai.013G104300' => 'gra', 'Gorai.013G104400' => 'gra', 'GSVIVG01000754001' => 'vvi', 'GSVIVG01000756001' => 'vvi', 'GSVIVG01010903001' => 'vvi', 'GSVIVG01017623001' => 'vvi', 'GSVIVG01018113001' => 'vvi', 'GSVIVG01018116001' => 'vvi', 'GSVIVG01018118001' => 'vvi', 'HanXRQChr03g0076211' => 'han', 'HanXRQChr03g0092431' => 'han', 'HanXRQChr03g0092441' => 'han', 'HanXRQChr03g0092591' => 'han', 'HanXRQChr03g0092671' => 'han', 'HanXRQChr03g0092681' => 'han', 'HanXRQChr03g0092691' => 'han', 'HanXRQChr03g0092701' => 'han', 'HanXRQChr03g0092721' => 'han', 'HanXRQChr03g0092731' => 'han', 'HanXRQChr04g0113681' => 'han', 'HanXRQChr10g0281371' => 'han', 'HanXRQChr11g0337141' => 'han', 'HanXRQChr13g0424521' => 'han', 'HanXRQChr13g0424531' => 'han', 'HanXRQChr13g0424541' => 'han', 'HanXRQChr16g0498221' => 'han', 'Haze_04377' => 'cav', 'Haze_11298' => 'cav', 'Haze_24547' => 'cav', 'Haze_24550' => 'cav', 'Haze_26587' => 'cav', 'Hma1.2p1_0650F.1_g195410' => 'hma', 'Hma1.2p1_0893F.1_g233470' => 'hma', 'HPP92_006508' => 'vpl', 'HPP92_024780' => 'vpl', 'Hund02688' => 'sun', 'Hund09380' => 'sun', 'Hund09381' => 'sun', 'Hund09832' => 'sun', 'Hund09833' => 'sun', 'Hund11351' => 'sun', 'Hund11513' => 'sun', 'Lalb_Chr06g0162591' => 'lal', 'Lalb_Chr06g0162601' => 'lal', 'Lalb_Chr06g0169321' => 'lal', 'Lalb_Chr09g0330951' => 'lal', 'Lalb_Chr16g0387631' => 'lal', 'Lalb_Chr21g0306241' => 'lal', 'Lalb_Chr25g0290051' => 'lal', 'Lalb_Chr25g0290061' => 'lal', 'Lalb_Chr25g0290071' => 'lal', 'Lj1g0003876' => 'lja', 'Lj1P1207T36' => 'lonja', 'Lj2C1156G12' => 'lonja', 'Lj3A793G39' => 'lonja', 'Lj3C580G2' => 'lonja', 'Lj3C780G2' => 'lonja', 'Lj3C780T4' => 'lonja', 'Lj3C793G9' => 'lonja', 'Lj4g0012960' => 'lja', 'Lj5g0021252' => 'lja', 'Lj5g0021484' => 'lja', 'Lj5g0024528' => 'lja', 'Lj6A399T12' => 'lonja', 'Lj6A656G65' => 'lonja', 'Lsat_1_v5_gn_3_125500' => 'lsa', 'Lsat_1_v5_gn_3_125540' => 'lsa', 'Lsat_1_v5_gn_5_72701' => 'lsa', 'Lsat_1_v5_gn_8_91560' => 'lsa', 'Lsat_1_v5_gn_9_9640' => 'lsa', 'Manes.01G200600' => 'mes', 'Manes.01G200700' => 'mes', 'Manes.03G168900' => 'mes', 'Manes.03G169000' => 'mes', 'Manes.05G085801' => 'mes', 'Manes.05G086200' => 'mes', 'Manes.15G036700' => 'mes', 'Manes.15G036900' => 'mes', 'Mapoly0004s0172' => 'mpo', 'Mapoly0023s0001' => 'mpo', 'Mapoly0142s0012' => 'mpo', 'MBI01_g32854_MAGBIO' => 'mbi', 'MBI11_g24427_MAGBIO' => 'mbi', 'MBI11_g47319_MAGBIO' => 'mbi', 'MCO01G433' => 'mco', 'MD00G1187800' => 'mdo', 'MD04G1226500' => 'mdo', 'MD05G1203900' => 'mdo', 'MD10G1191100' => 'mdo', 'MD12G1243500' => 'mdo', 'MD13G1207000' => 'mdo', 'MD13G1207100' => 'mdo', 'MD16G1208600' => 'mdo', 'Medtr1g050352' => 'mtr', 'Medtr1g070385' => 'mtr', 'Medtr1g070450' => 'mtr', 'Medtr1g075200' => 'mtr', 'Medtr1g075250' => 'mtr', 'Medtr1g075260' => 'mtr', 'Medtr1g475250' => 'mtr', 'Medtr4g075450' => 'mtr', 'Medtr7g096300' => 'mtr', 'Medtr8g105110' => 'mtr', 'MELO3C006470.2' => 'cme', 'MELO3C006471.2' => 'cme', 'MELO3C020772.2' => 'cme', 'MELO3C026780.2' => 'cme', 'MELO3C026781.2' => 'cme', 'Migut.D00390' => 'egut', 'Migut.G00435' => 'egut', 'Migut.G00436' => 'egut', 'Migut.G00718' => 'egut', 'MSTRG.21891' => 'ama', 'MSTRG.26910' => 'ama', 'MSTRG.4099' => 'ama', 'MSTRG.9925' => 'ama', 'Nitab4.5_0000165g0010' => 'nta', 'Nitab4.5_0000209g0180' => 'nta', 'Nitab4.5_0000244g0440' => 'nta', 'Nitab4.5_0000525g0220' => 'nta', 'Nitab4.5_0001597g0020' => 'nta', 'Nitab4.5_0001878g0040' => 'nta', 'Nitab4.5_0001878g0060' => 'nta', 'Nitab4.5_0002838g0100' => 'nta', 'Nitab4.5_0002838g0120' => 'nta', 'Nitab4.5_0004798g0030' => 'nta', 'Nitab4.5_0005420g0010' => 'nta', 'Nitab4.5_0005507g0010' => 'nta', 'Nitab4.5_0005574g0020' => 'nta', 'Nitab4.5_0005838g0010' => 'nta', 'Nitab4.5_0010580g0020' => 'nta', 'Nn1g02599' => 'nnu', 'Nn1g02608' => 'nnu', 'Nn3g17742' => 'nnu', 'Nn3g19534' => 'nnu', 'Nn3g19535' => 'nnu', 'Oeu008790.1' => 'oeu', 'Oeu008792.1' => 'oeu', 'Oeu032590.1' => 'oeu', 'Oeu035349.1' => 'oeu', 'Oeu049791.1' => 'oeu', 'Os01g0774500' => 'osa', 'Os03g0628800' => 'osa', 'Os03g0798600' => 'osa', 'Os05g0508800' => 'osa', 'Peaxi162Scf00036g02018' => 'pax', 'Peaxi162Scf00578g00032' => 'pax', 'Peaxi162Scf00578g00317' => 'pax', 'Peaxi162Scf00785g00114' => 'pax', 'Peaxi162Scf00813g00119' => 'pax', 'Peaxi162Scf00906g00227' => 'pax', 'PGR004G0875' => 'pgr', 'PGR004G2424' => 'pgr', 'PGR031G1239' => 'pgr', 'PGR031G2474' => 'pgr', 'PGR044G0423' => 'pgr', 'PGSC0003DMG400001128' => 'stu', 'PGSC0003DMG400007336' => 'stu', 'PGSC0003DMG400016318' => 'stu', 'PGSC0003DMG400016319' => 'stu', 'PGSC0003DMG400018074' => 'stu', 'Phvul.001G157700' => 'pvu', 'Phvul.002G148550' => 'pvu', 'Phvul.002G320200' => 'pvu', 'Phvul.003G089200' => 'pvu', 'Phvul.007G126000' => 'pvu', 'Phvul.007G126100' => 'pvu', 'Phvul.007G178000' => 'pvu', 'Phvul.007G178200' => 'pvu', 'Potri.002G043000' => 'ptr', 'Potri.002G043200' => 'ptr', 'Potri.003G123750' => 'ptr', 'Potri.005G055401' => 'ptr', 'Potri.005G219700' => 'ptr', 'Potri.005G220000' => 'ptr', 'Potri.008G161901' => 'ptr', 'Potri.008G162000' => 'ptr', 'Potri.008G162400' => 'ptr', 'Potri.010G076900' => 'ptr', 'Pp3c12_9180' => 'ppa', 'Pp3c13_19770' => 'ppa', 'Pp3c14_22950' => 'ppa', 'Pp3c16_12160' => 'ppa', 'Pp3c27_7820' => 'ppa', 'Pp3c2_3490' => 'ppa', 'Pp3c3_23700' => 'ppa', 'Pp3c3_36520' => 'ppa', 'Pp3c4_15250' => 'ppa', 'PRCOL_00007002' => 'pco', 'Prupe.1G030600' => 'ppe', 'Prupe.1G030700' => 'ppe', 'Prupe.6G345200' => 'ppe', 'Prupe.8G230300' => 'ppe', 'Prupe.8G230500' => 'ppe', 'Psat3g059600' => 'psa', 'Psat5g200920' => 'psa', 'Psat6g056440' => 'psa', 'Psat6g057360' => 'psa', 'Psat6g134120' => 'psa', 'Psat6g134160' => 'psa', 'Psat7g008640' => 'psa', 'Psat7g185240' => 'psa', 'PSO017G1330' => 'pso', 'PSO063G6097' => 'pso', 'PSO170G0835' => 'pso', 'PSO170G2499' => 'pso', 'PSO210G5058' => 'pso', 'PSO210G6154' => 'pso', 'PSO585G0031' => 'pso', 'PSO832G0264' => 'pso', 'PSO832G4288' => 'pso', 'QL03p027355' => 'qlo', 'QL03p027430' => 'qlo', 'QL04p081380' => 'qlo', 'QL06p015642' => 'qlo', 'QL06p015650' => 'qlo', 'QL06p015686' => 'qlo', 'QL12p042927' => 'qlo', 'QL93p1863_0035' => 'qlo', 'RcHm_v2.0_Chr3g0450581' => 'rch', 'RcHm_v2.0_Chr4g0390371' => 'rch', 'RcHm_v2.0_Chr4g0390381' => 'rch', 'RcHm_v2.0_Chr4g0390491' => 'rch', 'RcHm_v2.0_Chr4g0390501' => 'rch', 'RcHm_v2.0_Chr6g0289231' => 'rch', 'Rhsim04G0190400' => 'rsi', 'Rhsim04G0190500' => 'rsi', 'Rhsim04G0190600' => 'rsi', 'Rhsim13G0031400' => 'rsi', 'Rhsim13G0165600' => 'rsi', 'RhsimUnG0114600' => 'rsi', 'RhsimUnG0114700' => 'rsi', 'Sabra02G0034800' => 'sbr', 'Sabra02G0035100' => 'sbr', 'Sabra05G0168600' => 'sbr', 'Sabra05G0168800' => 'sbr', 'Sabra08G0123700' => 'sbr', 'Sabra10G0031900' => 'sbr', 'Sabra13G0039000' => 'sbr', 'SalBow2G0782' => 'sbo', 'SalBow2G1403' => 'sbo', 'SalBow4G0074' => 'sbo', 'SalBow4G2635' => 'sbo', 'SalBow5G3010' => 'sbo', 'Sc05g0000870' => 'sci', 'Sc05g0000890' => 'sci', 'Sc13g0005000' => 'sci', 'Sc13g0005030' => 'sci', 'Sc19g0003790' => 'sci', 'Sc19g0003800' => 'sci', 'Sed0003467' => 'sed', 'Sed0009355' => 'sed', 'Sed0009894' => 'sed', 'Sed0011972' => 'sed', 'Sed0021483' => 'sed', 'Sed0021750' => 'sed', 'Sed0026279' => 'sed', 'SEGI_05312' => 'sgi', 'SEGI_10112' => 'sgi', 'SEGI_15835' => 'sgi', 'SEGI_30386' => 'sgi', 'SEGI_34122' => 'sgi', 'SEGI_35063' => 'sgi', 'SGA_v2.0_scaffold101G29794' => 'sas', 'SGA_v2.0_scaffold1G00573' => 'sas', 'SGA_v2.0_scaffold79G25637' => 'sas', 'SGA_v2.0_scaffold88G27283' => 'sas', 'SGA_v2.0_scaffold88G27285' => 'sas', 'SGA_v2.0_scaffold88G27331' => 'sas', 'SHI09937' => 'shi', 'SMO119G0302' => 'smo', 'SMO137G0231' => 'smo', 'SMO367G1151' => 'smo', 'Solyc02g082000.3' => 'sly', 'Solyc06g031670.3' => 'sly', 'Solyc06g053810.3' => 'sly', 'Solyc07g025457.1' => 'sly', 'Solyc08g059740.1' => 'sly', 'Solyc08g059750.3' => 'sly', 'Solyc09g083370.3' => 'sly', 'Solyc12g038950.3' => 'sly', 'Sopen02g026630' => 'spe', 'Sopen06g018930' => 'spe', 'Sopen06g018940' => 'spe', 'Sopen08g009460' => 'spe', 'Sopen09g032290' => 'spe', 'Sp1g03080' => 'spa', 'Sp1g03090' => 'spa', 'Sp1g05480' => 'spa', 'Sp2g07860' => 'spa', 'Sp2g08430' => 'spa', 'Sp2g08440' => 'spa', 'Sp2g26200' => 'spa', 'Sp4g13170' => 'spa', 'Sp6g33840' => 'spa', 'SpUn1204_0010' => 'spa', 'TAR365G0908' => 'tar', 'TAR381G1270' => 'tar', 'TAR381G1651' => 'tar', 'TAR625G1131' => 'tar', 'TAR633G0962' => 'tar', 'TAR633G1729' => 'tar', 'TAR633G1864' => 'tar', 'TAR636G0221' => 'tar', 'TAR636G0314' => 'tar', 'TAR636G3202' => 'tar', 'THA.LOC104800805' => 'tha', 'THA.LOC104801096' => 'tha', 'THA.LOC104801555' => 'tha', 'THA.LOC104808491' => 'tha', 'THA.LOC104808595' => 'tha', 'THA.LOC104815985' => 'tha', 'THA.LOC104822250' => 'tha', 'THA.LOC104826071' => 'tha', 'Thecc.01G265200' => 'tca', 'Thecc.01G265300' => 'tca', 'Thecc.01G265700' => 'tca', 'Thecc.03G109100' => 'tca', 'Thecc.04G245900' => 'tca', 'Thecc.04G246000' => 'tca', 'Thhalv10003334m.g' => 'esa', 'Thhalv10005508m.g' => 'esa', 'Thhalv10005643m.g' => 'esa', 'Thhalv10007316m.g' => 'esa', 'Thhalv10009006m.g' => 'esa', 'Thhalv10009309m.g' => 'esa', 'Thhalv10014917m.g' => 'esa', 'Thhalv10014919m.g' => 'esa', 'Thhalv10015393m.g' => 'esa', 'Thhalv10016515m.g' => 'esa', 'Thhalv10029242m.g' => 'esa', 'TPR.G16654' => 'tpr', 'TPR.G20589' => 'tpr', 'TPR.G23029' => 'tpr', 'TPR.G27731' => 'tpr', 'TPR.G28889' => 'tpr', 'TPR.G28899' => 'tpr', 'TPR.G30846' => 'tpr', 'TPR.G5452' => 'tpr', 'TPR.G5713' => 'tpr', 'TPR.G9046' => 'tpr', 'TPR.G9061' => 'tpr', 'TWI09G1075' => 'twi', 'TWI12G0806' => 'twi', 'TWI18G0108' => 'twi', 'TWI53G1361' => 'twi', 'TWI73G0185' => 'twi', 'TWI73G0427' => 'twi', 'unitig_37.g12001' => 'ugi', 'unitig_747.g21660' => 'ugi', 'unitig_748.g7232' => 'ugi', 'unitig_748.g7315' => 'ugi', 'unitig_85.g27262' => 'ugi', 'unitig_92.g28220' => 'ugi', 'vmacro02632' => 'vma', 'vmacro08410' => 'vma', 'vmacro08411' => 'vma', 'vmacro15407' => 'vma', 'VMungo0251G3619' => 'vmu', 'VMungo0720G1204' => 'vmu', 'VMungo0720G1918' => 'vmu', 'VMungo0720G2387' => 'vmu', 'VMungo0720G2961' => 'vmu', 'VMungo1215G2154' => 'vmu', 'VMungo1383G2411' => 'vmu', 'Zm00001eb051130' => 'zma', 'Zm00001eb116830' => 'zma', 'Zm00001eb116850' => 'zma', 'Zm00001eb151740' => 'zma', 'Zm00001eb292360' => 'zma', 'Zm00001eb301640' => 'zma' ), 'gf_id' => 'HOM05D000856', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000856' ), 'data_identifier' => 'HOM05D000856', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000856', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p00010' => 'bna', 'A03p04160' => 'bna', 'A03p17160' => 'bna', 'A04p23370' => 'bna', 'A05p14860' => 'bna', 'A08p37020' => 'bna', 'A09p08050' => 'bna', 'A09p66800' => 'bna', 'A09p67940' => 'bna', 'A10p02680' => 'bna', 'A10p05320' => 'bna', 'Aa31LG1G20560' => 'aar', 'Aa31LG1G20610' => 'aar', 'Aa31LG1G7810' => 'aar', 'Aa31LG5G3590' => 'aar', 'Aa31LG5G6140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3819' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4683' => 'aag', 'Actinidia04480' => 'ach', 'Actinidia05466' => 'ach', 'Actinidia08445' => 'ach', 'Actinidia21170' => 'ach', 'Actinidia24812' => 'ach', 'Actinidia24951' => 'ach', 'Actinidia40088' => 'ach', 'Ah.02g111660' => 'amhyb', 'Ah.11g048900' => 'amhyb', 'Ah.11g049910' => 'amhyb', 'AL1G13870' => 'aly', 'AL1G13880' => 'aly', 'AL1G16760' => 'aly', 'AL390U10020' => 'aly', 'AL4G25520' => 'aly', 'AL6G19890' => 'aly', 'AL6G19900' => 'aly', 'AL6G19910' => 'aly', 'AL8G40100' => 'aly', 'Aqoxy2G03562' => 'aox', 'Aqoxy5G00316' => 'aox', 'Aqoxy5G00926' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1628KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1H403S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2FU6SJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.882I6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8YRY2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YN1SN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AF70II' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZA8L1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F916KL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHRD8H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KTZ8QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S22EMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8M29T' => 'arhy', 'AT1G04270' => 'ath', 'AT1G04280' => 'ath', 'AT1G06750' => 'ath', 'AT1G33850' => 'ath', 'AT2G30630' => 'ath', 'AT5G09490' => 'ath', 'AT5G09500' => 'ath', 'AT5G09510' => 'ath', 'AT5G43640' => 'ath', 'AT5G63070' => 'ath', 'ATR0605G315' => 'atr', 'Atru.chr11.175' => 'acertr', 'Atru.chr11.653' => 'acertr', 'Atru.chr3.1616' => 'acertr', 'Atru.chr4.2230' => 'acertr', 'Atru.chr4.2232' => 'acertr', 'Atru.chr5.1598' => 'acertr', 'Atru.chr5.1600' => 'acertr', 'Atru.chr5.2188' => 'acertr', 'AUR62008326' => 'cqu', 'AUR62011922' => 'cqu', 'AUR62011924' => 'cqu', 'AUR62021771' => 'cqu', 'AUR62032237' => 'cqu', 'AUR62032240' => 'cqu', 'BcaB01g05572' => 'bca', 'BcaB02g10337' => 'bca', 'BcaB04g19944' => 'bca', 'BcaB05g21548' => 'bca', 'BcaB05g21549' => 'bca', 'BcaB05g23227' => 'bca', 'BcaB06g26256' => 'bca', 'BcaB06g26257' => 'bca', 'BcaB06g28379' => 'bca', 'BcaC02g11159' => 'bca', 'BcaC03g13258' => 'bca', 'BcaC03g13259' => 'bca', 'BcaC05g24456' => 'bca', 'BcaC05g24457' => 'bca', 'BcaC07g36922' => 'bca', 'BcaC07g36923' => 'bca', 'BcaC07g42050' => 'bca', 'BcaC07g42176' => 'bca', 'BcaC07g42195' => 'bca', 'BcaC07g42196' => 'bca', 'BcaNung06674' => 'bca', 'BolC2t06351H' => 'bol', 'BolC2t06352H' => 'bol', 'BolC3t12993H' => 'bol', 'BolC4t23525H' => 'bol', 'BolC4t27475H' => 'bol', 'BolC5t29025H' => 'bol', 'BolC5t29026H' => 'bol', 'BolC8t46898H' => 'bol', 'BolC8t46899H' => 'bol', 'BolC8t52630H' => 'bol', 'BolC8t52765H' => 'bol', 'BolC9t53824H' => 'bol', 'BraA03t09760Z' => 'bra', 'BraA03t10990Z' => 'bra', 'BraA05t20413Z' => 'bra', 'BraA08t35602Z' => 'bra', 'BraA09t36458Z' => 'bra', 'BraA09t42018Z' => 'bra', 'BraA09t42129Z' => 'bra', 'BraA10t42536Z' => 'bra', 'BraA10t42537Z' => 'bra', 'C01p10690' => 'bna', 'C02p03890' => 'bna', 'C02p03900' => 'bna', 'C03p04620' => 'bna', 'C04p19870' => 'bna', 'C04p59670' => 'bna', 'C05p02460' => 'bna', 'C05p02470' => 'bna', 'C08p00980' => 'bna', 'C08p00990' => 'bna', 'C08p51030' => 'bna', 'C08p52360' => 'bna', 'C09p09120' => 'bna', 'CAN.G19.15' => 'can', 'CAN.G251.10' => 'can', 'CAN.G251.9' => 'can', 'CAN.G398.24' => 'can', 'CAN.G410.32' => 'can', 'CAN.G881.2' => 'can', 'CANSAT01G3025' => 'cansat', 'CANSAT78G1211' => 'cansat', 'CANSAT78G1218' => 'cansat', 'CANSAT78G1521' => 'cansat', 'CANSAT78G1670' => 'cansat', 'CARHR003600' => 'chi', 'CARHR003610' => 'chi', 'CARHR006290' => 'chi', 'CARHR006430' => 'chi', 'CARHR124110' => 'chi', 'CARHR203870' => 'chi', 'CARHR203880' => 'chi', 'CARHR203890' => 'chi', 'CARHR276880' => 'chi', 'Carub.0001s0346' => 'cru', 'Carub.0001s0347' => 'cru', 'Carub.0001s0607' => 'cru', 'Carub.0003s2768' => 'cru', 'Carub.0003s2769' => 'cru', 'Carub.0004s1178' => 'cru', 'Carub.0006s0806' => 'cru', 'Carub.0006s0807' => 'cru', 'Carub.0006s0808' => 'cru', 'Carub.0008s0501' => 'cru', 'Carub.0008s2379' => 'cru', 'Ca_08655_v3' => 'car', 'Ca_08922_v3' => 'car', 'Ca_08923_v3' => 'car', 'Ca_09119_v3' => 'car', 'Ca_09703_v3' => 'car', 'Ca_09705_v3' => 'car', 'Ca_09835_v3' => 'car', 'Ca_26403_v3' => 'car', 'Ca_30719_v3' => 'car', 'CBR_g17958' => 'cbr', 'CBR_g40516' => 'cbr', 'Cc00_g05350' => 'ccan', 'Cc01_g18690' => 'ccan', 'Cc03_g04830' => 'ccan', 'Cc03_g04850' => 'ccan', 'CDE02G4469' => 'cde', 'CDE06G0883' => 'cde', 'CDE06G1295' => 'cde', 'CDE06G1390' => 'cde', 'CDE07G0584' => 'cde', 'CDE07G1084' => 'cde', 'CDE08G1259' => 'cde', 'Cfa002341' => 'cfa', 'Cfa024337' => 'cfa', 'Ciclev10004749m.g' => 'ccl', 'Ciclev10006127m.g' => 'ccl', 'Ciclev10019720m.g' => 'ccl', 'Ciclev10022652m.g' => 'ccl', 'CiPaw.01G190400' => 'cil', 'CiPaw.01G190500' => 'cil', 'CiPaw.02G116400' => 'cil', 'CiPaw.02G116500' => 'cil', 'CiPaw.04G183000' => 'cil', 'CiPaw.04G183300' => 'cil', 'ClCG05G004610' => 'cla', 'ClCG05G004620' => 'cla', 'ClCG06G006730' => 'cla', 'ClCG06G006740' => 'cla', 'ClCG11G003690' => 'cla', 'COL.COLO4_08276' => 'col', 'COL.COLO4_08277' => 'col', 'COL.COLO4_15787' => 'col', 'COL.COLO4_15789' => 'col', 'Cpa.g.c44815' => 'cpa', 'Cpa.g.sc52.144' => 'cpa', 'Cpa.g.sc58.46' => 'cpa', 'Cpa.g.sc58.47' => 'cpa', 'Cre08.g360900' => 'cre', 'CsaV3_2G013030' => 'csa', 'CsaV3_2G013050' => 'csa', 'CsaV3_2G015620' => 'csa', 'CsaV3_3G012590' => 'csa', 'CsaV3_3G012600' => 'csa', 'CSS0001641' => 'camsi', 'CSS0008310' => 'camsi', 'CSS0013011' => 'camsi', 'CSS0017147' => 'camsi', 'CSS0022970' => 'camsi', 'CSS0025655' => 'camsi', 'CSS0028665' => 'camsi', 'CSS0029117' => 'camsi', 'CSS0032024' => 'camsi', 'CSS0039681' => 'camsi', 'CSS0046516' => 'camsi', 'CSS0050307' => 'camsi', 'DCAR_005871' => 'dca', 'DCAR_007342' => 'dca', 'DCAR_024228' => 'dca', 'DCAR_027277' => 'dca', 'DCAR_030718' => 'dca', 'Dinv20287' => 'din', 'Dinv22461' => 'din', 'Dinv22464' => 'din', 'Dinv29912' => 'din', 'Dinv29913' => 'din', 'Dinv34580' => 'din', 'Dinv34582' => 'din', 'Dinv44632' => 'din', 'Duzib052G0266' => 'dzi', 'Duzib133G0907' => 'dzi', 'Duzib133G1034' => 'dzi', 'Duzib138G0207' => 'dzi', 'Duzib138G0491' => 'dzi', 'Duzib151G0812' => 'dzi', 'Duzib151G1166' => 'dzi', 'Duzib168G0192' => 'dzi', 'Duzib211G0077' => 'dzi', 'Duzib212G0429' => 'dzi', 'Duzib212G0472' => 'dzi', 'ECA233G2617' => 'eca', 'ECA236G4188' => 'eca', 'ECA240G0936' => 'eca', 'ECA240G1129' => 'eca', 'ECA247G0623' => 'eca', 'EL10Ac5g10451' => 'bvu', 'EL10Ac5g10453' => 'bvu', 'EL10Ac5g10894' => 'bvu', 'Eucgr.H00192' => 'egr', 'Eucgr.H00193' => 'egr', 'Eucgr.H00194' => 'egr', 'Eucgr.J01562' => 'egr', 'Eucgr.K03301' => 'egr', 'FAN02G0632' => 'fan', 'FAN05G5378' => 'fan', 'FAN09G3247' => 'fan', 'FAN12G0435' => 'fan', 'FAN12G2426' => 'fan', 'FAN14G1707' => 'fan', 'FAN14G4725' => 'fan', 'FAN15G2071' => 'fan', 'FAN17G3065' => 'fan', 'FAN19G1376' => 'fan', 'FAN20G0354' => 'fan', 'FAN20G2429' => 'fan', 'FAN20G2658' => 'fan', 'FAN24G2343' => 'fan', 'FAN27G2362' => 'fan', 'FAN28G1765' => 'fan', 'FvH4_1g16020' => 'fve', 'FvH4_2g04890' => 'fve', 'FvH4_2g22270' => 'fve', 'FvH4_4g02630' => 'fve', 'FvH4_4g02640' => 'fve', 'FvH4_6g02650' => 'fve', 'Glyma.02G140600' => 'gma', 'Glyma.03G159900' => 'gma', 'Glyma.05G234800' => 'gma', 'Glyma.07G269600' => 'gma', 'Glyma.08G042300' => 'gma', 'Glyma.10G033500' => 'gma', 'Glyma.10G185200' => 'gma', 'Glyma.17G004300' => 'gma', 'Glyma.19G161900' => 'gma', 'Glyma.20G205100' => 'gma', 'Glyma.20G205200' => 'gma', 'Gohir.A01G139101' => 'ghi', 'Gohir.A02G035600' => 'ghi', 'Gohir.A02G117901' => 'ghi', 'Gohir.A07G210100' => 'ghi', 'Gohir.A07G210200' => 'ghi', 'Gohir.A08G061100' => 'ghi', 'Gohir.A09G223000' => 'ghi', 'Gohir.A09G223100' => 'ghi', 'Gohir.A10G113900' => 'ghi', 'Gohir.A10G114000' => 'ghi', 'Gohir.D02G042300' => 'ghi', 'Gohir.D07G216100' => 'ghi', 'Gohir.D07G216200' => 'ghi', 'Gohir.D08G070400' => 'ghi', 'Gohir.D09G225000' => 'ghi', 'Gohir.D09G225100' => 'ghi', 'Gohir.D10G152300' => 'ghi', 'Gohir.D10G153200' => 'ghi', 'Gohir.D11G133701' => 'ghi', 'Gorai.004G074100' => 'gra', 'Gorai.005G046800' => 'gra', 'Gorai.006G246500' => 'gra', 'Gorai.006G246600' => 'gra', 'Gorai.007G142900' => 'gra', 'Gorai.011G171000' => 'gra', 'Gorai.011G171100' => 'gra', 'Gorai.013G104300' => 'gra', 'Gorai.013G104400' => 'gra', 'GSVIVG01000754001' => 'vvi', 'GSVIVG01000756001' => 'vvi', 'GSVIVG01010903001' => 'vvi', 'GSVIVG01017623001' => 'vvi', 'GSVIVG01018113001' => 'vvi', 'GSVIVG01018116001' => 'vvi', 'GSVIVG01018118001' => 'vvi', 'HanXRQChr03g0076211' => 'han', 'HanXRQChr03g0092431' => 'han', 'HanXRQChr03g0092441' => 'han', 'HanXRQChr03g0092591' => 'han', 'HanXRQChr03g0092671' => 'han', 'HanXRQChr03g0092681' => 'han', 'HanXRQChr03g0092691' => 'han', 'HanXRQChr03g0092701' => 'han', 'HanXRQChr03g0092721' => 'han', 'HanXRQChr03g0092731' => 'han', 'HanXRQChr04g0113681' => 'han', 'HanXRQChr10g0281371' => 'han', 'HanXRQChr11g0337141' => 'han', 'HanXRQChr13g0424521' => 'han', 'HanXRQChr13g0424531' => 'han', 'HanXRQChr13g0424541' => 'han', 'HanXRQChr16g0498221' => 'han', 'Haze_04377' => 'cav', 'Haze_11298' => 'cav', 'Haze_24547' => 'cav', 'Haze_24550' => 'cav', 'Haze_26587' => 'cav', 'Hma1.2p1_0650F.1_g195410' => 'hma', 'Hma1.2p1_0893F.1_g233470' => 'hma', 'HPP92_006508' => 'vpl', 'HPP92_024780' => 'vpl', 'Hund02688' => 'sun', 'Hund09380' => 'sun', 'Hund09381' => 'sun', 'Hund09832' => 'sun', 'Hund09833' => 'sun', 'Hund11351' => 'sun', 'Hund11513' => 'sun', 'Lalb_Chr06g0162591' => 'lal', 'Lalb_Chr06g0162601' => 'lal', 'Lalb_Chr06g0169321' => 'lal', 'Lalb_Chr09g0330951' => 'lal', 'Lalb_Chr16g0387631' => 'lal', 'Lalb_Chr21g0306241' => 'lal', 'Lalb_Chr25g0290051' => 'lal', 'Lalb_Chr25g0290061' => 'lal', 'Lalb_Chr25g0290071' => 'lal', 'Lj1g0003876' => 'lja', 'Lj1P1207T36' => 'lonja', 'Lj2C1156G12' => 'lonja', 'Lj3A793G39' => 'lonja', 'Lj3C580G2' => 'lonja', 'Lj3C780G2' => 'lonja', 'Lj3C780T4' => 'lonja', 'Lj3C793G9' => 'lonja', 'Lj4g0012960' => 'lja', 'Lj5g0021252' => 'lja', 'Lj5g0021484' => 'lja', 'Lj5g0024528' => 'lja', 'Lj6A399T12' => 'lonja', 'Lj6A656G65' => 'lonja', 'Lsat_1_v5_gn_3_125500' => 'lsa', 'Lsat_1_v5_gn_3_125540' => 'lsa', 'Lsat_1_v5_gn_5_72701' => 'lsa', 'Lsat_1_v5_gn_8_91560' => 'lsa', 'Lsat_1_v5_gn_9_9640' => 'lsa', 'Manes.01G200600' => 'mes', 'Manes.01G200700' => 'mes', 'Manes.03G168900' => 'mes', 'Manes.03G169000' => 'mes', 'Manes.05G085801' => 'mes', 'Manes.05G086200' => 'mes', 'Manes.15G036700' => 'mes', 'Manes.15G036900' => 'mes', 'Mapoly0004s0172' => 'mpo', 'Mapoly0023s0001' => 'mpo', 'Mapoly0142s0012' => 'mpo', 'MBI01_g32854_MAGBIO' => 'mbi', 'MBI11_g24427_MAGBIO' => 'mbi', 'MBI11_g47319_MAGBIO' => 'mbi', 'MCO01G433' => 'mco', 'MD00G1187800' => 'mdo', 'MD04G1226500' => 'mdo', 'MD05G1203900' => 'mdo', 'MD10G1191100' => 'mdo', 'MD12G1243500' => 'mdo', 'MD13G1207000' => 'mdo', 'MD13G1207100' => 'mdo', 'MD16G1208600' => 'mdo', 'Medtr1g050352' => 'mtr', 'Medtr1g070385' => 'mtr', 'Medtr1g070450' => 'mtr', 'Medtr1g075200' => 'mtr', 'Medtr1g075250' => 'mtr', 'Medtr1g075260' => 'mtr', 'Medtr1g475250' => 'mtr', 'Medtr4g075450' => 'mtr', 'Medtr7g096300' => 'mtr', 'Medtr8g105110' => 'mtr', 'MELO3C006470.2' => 'cme', 'MELO3C006471.2' => 'cme', 'MELO3C020772.2' => 'cme', 'MELO3C026780.2' => 'cme', 'MELO3C026781.2' => 'cme', 'Migut.D00390' => 'egut', 'Migut.G00435' => 'egut', 'Migut.G00436' => 'egut', 'Migut.G00718' => 'egut', 'MSTRG.21891' => 'ama', 'MSTRG.26910' => 'ama', 'MSTRG.4099' => 'ama', 'MSTRG.9925' => 'ama', 'Nitab4.5_0000165g0010' => 'nta', 'Nitab4.5_0000209g0180' => 'nta', 'Nitab4.5_0000244g0440' => 'nta', 'Nitab4.5_0000525g0220' => 'nta', 'Nitab4.5_0001597g0020' => 'nta', 'Nitab4.5_0001878g0040' => 'nta', 'Nitab4.5_0001878g0060' => 'nta', 'Nitab4.5_0002838g0100' => 'nta', 'Nitab4.5_0002838g0120' => 'nta', 'Nitab4.5_0004798g0030' => 'nta', 'Nitab4.5_0005420g0010' => 'nta', 'Nitab4.5_0005507g0010' => 'nta', 'Nitab4.5_0005574g0020' => 'nta', 'Nitab4.5_0005838g0010' => 'nta', 'Nitab4.5_0010580g0020' => 'nta', 'Nn1g02599' => 'nnu', 'Nn1g02608' => 'nnu', 'Nn3g17742' => 'nnu', 'Nn3g19534' => 'nnu', 'Nn3g19535' => 'nnu', 'Oeu008790.1' => 'oeu', 'Oeu008792.1' => 'oeu', 'Oeu032590.1' => 'oeu', 'Oeu035349.1' => 'oeu', 'Oeu049791.1' => 'oeu', 'Os01g0774500' => 'osa', 'Os03g0628800' => 'osa', 'Os03g0798600' => 'osa', 'Os05g0508800' => 'osa', 'Peaxi162Scf00036g02018' => 'pax', 'Peaxi162Scf00578g00032' => 'pax', 'Peaxi162Scf00578g00317' => 'pax', 'Peaxi162Scf00785g00114' => 'pax', 'Peaxi162Scf00813g00119' => 'pax', 'Peaxi162Scf00906g00227' => 'pax', 'PGR004G0875' => 'pgr', 'PGR004G2424' => 'pgr', 'PGR031G1239' => 'pgr', 'PGR031G2474' => 'pgr', 'PGR044G0423' => 'pgr', 'PGSC0003DMG400001128' => 'stu', 'PGSC0003DMG400007336' => 'stu', 'PGSC0003DMG400016318' => 'stu', 'PGSC0003DMG400016319' => 'stu', 'PGSC0003DMG400018074' => 'stu', 'Phvul.001G157700' => 'pvu', 'Phvul.002G148550' => 'pvu', 'Phvul.002G320200' => 'pvu', 'Phvul.003G089200' => 'pvu', 'Phvul.007G126000' => 'pvu', 'Phvul.007G126100' => 'pvu', 'Phvul.007G178000' => 'pvu', 'Phvul.007G178200' => 'pvu', 'Potri.002G043000' => 'ptr', 'Potri.002G043200' => 'ptr', 'Potri.003G123750' => 'ptr', 'Potri.005G055401' => 'ptr', 'Potri.005G219700' => 'ptr', 'Potri.005G220000' => 'ptr', 'Potri.008G161901' => 'ptr', 'Potri.008G162000' => 'ptr', 'Potri.008G162400' => 'ptr', 'Potri.010G076900' => 'ptr', 'Pp3c12_9180' => 'ppa', 'Pp3c13_19770' => 'ppa', 'Pp3c14_22950' => 'ppa', 'Pp3c16_12160' => 'ppa', 'Pp3c27_7820' => 'ppa', 'Pp3c2_3490' => 'ppa', 'Pp3c3_23700' => 'ppa', 'Pp3c3_36520' => 'ppa', 'Pp3c4_15250' => 'ppa', 'PRCOL_00007002' => 'pco', 'Prupe.1G030600' => 'ppe', 'Prupe.1G030700' => 'ppe', 'Prupe.6G345200' => 'ppe', 'Prupe.8G230300' => 'ppe', 'Prupe.8G230500' => 'ppe', 'Psat3g059600' => 'psa', 'Psat5g200920' => 'psa', 'Psat6g056440' => 'psa', 'Psat6g057360' => 'psa', 'Psat6g134120' => 'psa', 'Psat6g134160' => 'psa', 'Psat7g008640' => 'psa', 'Psat7g185240' => 'psa', 'PSO017G1330' => 'pso', 'PSO063G6097' => 'pso', 'PSO170G0835' => 'pso', 'PSO170G2499' => 'pso', 'PSO210G5058' => 'pso', 'PSO210G6154' => 'pso', 'PSO585G0031' => 'pso', 'PSO832G0264' => 'pso', 'PSO832G4288' => 'pso', 'QL03p027355' => 'qlo', 'QL03p027430' => 'qlo', 'QL04p081380' => 'qlo', 'QL06p015642' => 'qlo', 'QL06p015650' => 'qlo', 'QL06p015686' => 'qlo', 'QL12p042927' => 'qlo', 'QL93p1863_0035' => 'qlo', 'RcHm_v2.0_Chr3g0450581' => 'rch', 'RcHm_v2.0_Chr4g0390371' => 'rch', 'RcHm_v2.0_Chr4g0390381' => 'rch', 'RcHm_v2.0_Chr4g0390491' => 'rch', 'RcHm_v2.0_Chr4g0390501' => 'rch', 'RcHm_v2.0_Chr6g0289231' => 'rch', 'Rhsim04G0190400' => 'rsi', 'Rhsim04G0190500' => 'rsi', 'Rhsim04G0190600' => 'rsi', 'Rhsim13G0031400' => 'rsi', 'Rhsim13G0165600' => 'rsi', 'RhsimUnG0114600' => 'rsi', 'RhsimUnG0114700' => 'rsi', 'Sabra02G0034800' => 'sbr', 'Sabra02G0035100' => 'sbr', 'Sabra05G0168600' => 'sbr', 'Sabra05G0168800' => 'sbr', 'Sabra08G0123700' => 'sbr', 'Sabra10G0031900' => 'sbr', 'Sabra13G0039000' => 'sbr', 'SalBow2G0782' => 'sbo', 'SalBow2G1403' => 'sbo', 'SalBow4G0074' => 'sbo', 'SalBow4G2635' => 'sbo', 'SalBow5G3010' => 'sbo', 'Sc05g0000870' => 'sci', 'Sc05g0000890' => 'sci', 'Sc13g0005000' => 'sci', 'Sc13g0005030' => 'sci', 'Sc19g0003790' => 'sci', 'Sc19g0003800' => 'sci', 'Sed0003467' => 'sed', 'Sed0009355' => 'sed', 'Sed0009894' => 'sed', 'Sed0011972' => 'sed', 'Sed0021483' => 'sed', 'Sed0021750' => 'sed', 'Sed0026279' => 'sed', 'SEGI_05312' => 'sgi', 'SEGI_10112' => 'sgi', 'SEGI_15835' => 'sgi', 'SEGI_30386' => 'sgi', 'SEGI_34122' => 'sgi', 'SEGI_35063' => 'sgi', 'SGA_v2.0_scaffold101G29794' => 'sas', 'SGA_v2.0_scaffold1G00573' => 'sas', 'SGA_v2.0_scaffold79G25637' => 'sas', 'SGA_v2.0_scaffold88G27283' => 'sas', 'SGA_v2.0_scaffold88G27285' => 'sas', 'SGA_v2.0_scaffold88G27331' => 'sas', 'SHI09937' => 'shi', 'SMO119G0302' => 'smo', 'SMO137G0231' => 'smo', 'SMO367G1151' => 'smo', 'Solyc02g082000.3' => 'sly', 'Solyc06g031670.3' => 'sly', 'Solyc06g053810.3' => 'sly', 'Solyc07g025457.1' => 'sly', 'Solyc08g059740.1' => 'sly', 'Solyc08g059750.3' => 'sly', 'Solyc09g083370.3' => 'sly', 'Solyc12g038950.3' => 'sly', 'Sopen02g026630' => 'spe', 'Sopen06g018930' => 'spe', 'Sopen06g018940' => 'spe', 'Sopen08g009460' => 'spe', 'Sopen09g032290' => 'spe', 'Sp1g03080' => 'spa', 'Sp1g03090' => 'spa', 'Sp1g05480' => 'spa', 'Sp2g07860' => 'spa', 'Sp2g08430' => 'spa', 'Sp2g08440' => 'spa', 'Sp2g26200' => 'spa', 'Sp4g13170' => 'spa', 'Sp6g33840' => 'spa', 'SpUn1204_0010' => 'spa', 'TAR365G0908' => 'tar', 'TAR381G1270' => 'tar', 'TAR381G1651' => 'tar', 'TAR625G1131' => 'tar', 'TAR633G0962' => 'tar', 'TAR633G1729' => 'tar', 'TAR633G1864' => 'tar', 'TAR636G0221' => 'tar', 'TAR636G0314' => 'tar', 'TAR636G3202' => 'tar', 'THA.LOC104800805' => 'tha', 'THA.LOC104801096' => 'tha', 'THA.LOC104801555' => 'tha', 'THA.LOC104808491' => 'tha', 'THA.LOC104808595' => 'tha', 'THA.LOC104815985' => 'tha', 'THA.LOC104822250' => 'tha', 'THA.LOC104826071' => 'tha', 'Thecc.01G265200' => 'tca', 'Thecc.01G265300' => 'tca', 'Thecc.01G265700' => 'tca', 'Thecc.03G109100' => 'tca', 'Thecc.04G245900' => 'tca', 'Thecc.04G246000' => 'tca', 'Thhalv10003334m.g' => 'esa', 'Thhalv10005508m.g' => 'esa', 'Thhalv10005643m.g' => 'esa', 'Thhalv10007316m.g' => 'esa', 'Thhalv10009006m.g' => 'esa', 'Thhalv10009309m.g' => 'esa', 'Thhalv10014917m.g' => 'esa', 'Thhalv10014919m.g' => 'esa', 'Thhalv10015393m.g' => 'esa', 'Thhalv10016515m.g' => 'esa', 'Thhalv10029242m.g' => 'esa', 'TPR.G16654' => 'tpr', 'TPR.G20589' => 'tpr', 'TPR.G23029' => 'tpr', 'TPR.G27731' => 'tpr', 'TPR.G28889' => 'tpr', 'TPR.G28899' => 'tpr', 'TPR.G30846' => 'tpr', 'TPR.G5452' => 'tpr', 'TPR.G5713' => 'tpr', 'TPR.G9046' => 'tpr', 'TPR.G9061' => 'tpr', 'TWI09G1075' => 'twi', 'TWI12G0806' => 'twi', 'TWI18G0108' => 'twi', 'TWI53G1361' => 'twi', 'TWI73G0185' => 'twi', 'TWI73G0427' => 'twi', 'unitig_37.g12001' => 'ugi', 'unitig_747.g21660' => 'ugi', 'unitig_748.g7232' => 'ugi', 'unitig_748.g7315' => 'ugi', 'unitig_85.g27262' => 'ugi', 'unitig_92.g28220' => 'ugi', 'vmacro02632' => 'vma', 'vmacro08410' => 'vma', 'vmacro08411' => 'vma', 'vmacro15407' => 'vma', 'VMungo0251G3619' => 'vmu', 'VMungo0720G1204' => 'vmu', 'VMungo0720G1918' => 'vmu', 'VMungo0720G2387' => 'vmu', 'VMungo0720G2961' => 'vmu', 'VMungo1215G2154' => 'vmu', 'VMungo1383G2411' => 'vmu', 'Zm00001eb051130' => 'zma', 'Zm00001eb116830' => 'zma', 'Zm00001eb116850' => 'zma', 'Zm00001eb151740' => 'zma', 'Zm00001eb292360' => 'zma', 'Zm00001eb301640' => 'zma' ) $gf_id = 'HOM05D000856' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000856' ) $data_identifier = 'HOM05D000856' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 13, 'ath' => (int) 10, 'atr' => (int) 1, 'acertr' => (int) 8, 'cqu' => (int) 6, 'bca' => (int) 21, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 11, 'car' => (int) 9, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 8, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 5, 'fan' => (int) 16, 'fve' => (int) 6, 'gma' => (int) 11, 'ghi' => (int) 19, 'gra' => (int) 9, 'vvi' => (int) 7, 'han' => (int) 17, 'cav' => (int) 5, 'hma' => (int) 2, 'vpl' => (int) 2, 'sun' => (int) 7, 'lal' => (int) 9, 'lja' => (int) 5, 'lonja' => (int) 9, 'lsa' => (int) 5, 'mes' => (int) 8, 'mpo' => (int) 3, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 10, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 15, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 9, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 9, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 6, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 5, 'spa' => (int) 10, 'tar' => (int) 10, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 11, 'tpr' => (int) 11, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 4, 'vmu' => (int) 7, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb301640' $species_info = array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ) $local_species = 'sbr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000856', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p00010' => 'bna', 'A03p04160' => 'bna', 'A03p17160' => 'bna', 'A04p23370' => 'bna', 'A05p14860' => 'bna', 'A08p37020' => 'bna', 'A09p08050' => 'bna', 'A09p66800' => 'bna', 'A09p67940' => 'bna', 'A10p02680' => 'bna', 'A10p05320' => 'bna', 'Aa31LG1G20560' => 'aar', 'Aa31LG1G20610' => 'aar', 'Aa31LG1G7810' => 'aar', 'Aa31LG5G3590' => 'aar', 'Aa31LG5G6140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3819' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4683' => 'aag', 'Actinidia04480' => 'ach', 'Actinidia05466' => 'ach', 'Actinidia08445' => 'ach', 'Actinidia21170' => 'ach', 'Actinidia24812' => 'ach', 'Actinidia24951' => 'ach', 'Actinidia40088' => 'ach', 'Ah.02g111660' => 'amhyb', 'Ah.11g048900' => 'amhyb', 'Ah.11g049910' => 'amhyb', 'AL1G13870' => 'aly', 'AL1G13880' => 'aly', 'AL1G16760' => 'aly', 'AL390U10020' => 'aly', 'AL4G25520' => 'aly', 'AL6G19890' => 'aly', 'AL6G19900' => 'aly', 'AL6G19910' => 'aly', 'AL8G40100' => 'aly', 'Aqoxy2G03562' => 'aox', 'Aqoxy5G00316' => 'aox', 'Aqoxy5G00926' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1628KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1H403S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2FU6SJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.882I6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8YRY2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YN1SN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AF70II' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZA8L1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F916KL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHRD8H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KTZ8QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S22EMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8M29T' => 'arhy', 'AT1G04270' => 'ath', 'AT1G04280' => 'ath', 'AT1G06750' => 'ath', 'AT1G33850' => 'ath', 'AT2G30630' => 'ath', 'AT5G09490' => 'ath', 'AT5G09500' => 'ath', 'AT5G09510' => 'ath', 'AT5G43640' => 'ath', 'AT5G63070' => 'ath', 'ATR0605G315' => 'atr', 'Atru.chr11.175' => 'acertr', 'Atru.chr11.653' => 'acertr', 'Atru.chr3.1616' => 'acertr', 'Atru.chr4.2230' => 'acertr', 'Atru.chr4.2232' => 'acertr', 'Atru.chr5.1598' => 'acertr', 'Atru.chr5.1600' => 'acertr', 'Atru.chr5.2188' => 'acertr', 'AUR62008326' => 'cqu', 'AUR62011922' => 'cqu', 'AUR62011924' => 'cqu', 'AUR62021771' => 'cqu', 'AUR62032237' => 'cqu', 'AUR62032240' => 'cqu', 'BcaB01g05572' => 'bca', 'BcaB02g10337' => 'bca', 'BcaB04g19944' => 'bca', 'BcaB05g21548' => 'bca', 'BcaB05g21549' => 'bca', 'BcaB05g23227' => 'bca', 'BcaB06g26256' => 'bca', 'BcaB06g26257' => 'bca', 'BcaB06g28379' => 'bca', 'BcaC02g11159' => 'bca', 'BcaC03g13258' => 'bca', 'BcaC03g13259' => 'bca', 'BcaC05g24456' => 'bca', 'BcaC05g24457' => 'bca', 'BcaC07g36922' => 'bca', 'BcaC07g36923' => 'bca', 'BcaC07g42050' => 'bca', 'BcaC07g42176' => 'bca', 'BcaC07g42195' => 'bca', 'BcaC07g42196' => 'bca', 'BcaNung06674' => 'bca', 'BolC2t06351H' => 'bol', 'BolC2t06352H' => 'bol', 'BolC3t12993H' => 'bol', 'BolC4t23525H' => 'bol', 'BolC4t27475H' => 'bol', 'BolC5t29025H' => 'bol', 'BolC5t29026H' => 'bol', 'BolC8t46898H' => 'bol', 'BolC8t46899H' => 'bol', 'BolC8t52630H' => 'bol', 'BolC8t52765H' => 'bol', 'BolC9t53824H' => 'bol', 'BraA03t09760Z' => 'bra', 'BraA03t10990Z' => 'bra', 'BraA05t20413Z' => 'bra', 'BraA08t35602Z' => 'bra', 'BraA09t36458Z' => 'bra', 'BraA09t42018Z' => 'bra', 'BraA09t42129Z' => 'bra', 'BraA10t42536Z' => 'bra', 'BraA10t42537Z' => 'bra', 'C01p10690' => 'bna', 'C02p03890' => 'bna', 'C02p03900' => 'bna', 'C03p04620' => 'bna', 'C04p19870' => 'bna', 'C04p59670' => 'bna', 'C05p02460' => 'bna', 'C05p02470' => 'bna', 'C08p00980' => 'bna', 'C08p00990' => 'bna', 'C08p51030' => 'bna', 'C08p52360' => 'bna', 'C09p09120' => 'bna', 'CAN.G19.15' => 'can', 'CAN.G251.10' => 'can', 'CAN.G251.9' => 'can', 'CAN.G398.24' => 'can', 'CAN.G410.32' => 'can', 'CAN.G881.2' => 'can', 'CANSAT01G3025' => 'cansat', 'CANSAT78G1211' => 'cansat', 'CANSAT78G1218' => 'cansat', 'CANSAT78G1521' => 'cansat', 'CANSAT78G1670' => 'cansat', 'CARHR003600' => 'chi', 'CARHR003610' => 'chi', 'CARHR006290' => 'chi', 'CARHR006430' => 'chi', 'CARHR124110' => 'chi', 'CARHR203870' => 'chi', 'CARHR203880' => 'chi', 'CARHR203890' => 'chi', 'CARHR276880' => 'chi', 'Carub.0001s0346' => 'cru', 'Carub.0001s0347' => 'cru', 'Carub.0001s0607' => 'cru', 'Carub.0003s2768' => 'cru', 'Carub.0003s2769' => 'cru', 'Carub.0004s1178' => 'cru', 'Carub.0006s0806' => 'cru', 'Carub.0006s0807' => 'cru', 'Carub.0006s0808' => 'cru', 'Carub.0008s0501' => 'cru', 'Carub.0008s2379' => 'cru', 'Ca_08655_v3' => 'car', 'Ca_08922_v3' => 'car', 'Ca_08923_v3' => 'car', 'Ca_09119_v3' => 'car', 'Ca_09703_v3' => 'car', 'Ca_09705_v3' => 'car', 'Ca_09835_v3' => 'car', 'Ca_26403_v3' => 'car', 'Ca_30719_v3' => 'car', 'CBR_g17958' => 'cbr', 'CBR_g40516' => 'cbr', 'Cc00_g05350' => 'ccan', 'Cc01_g18690' => 'ccan', 'Cc03_g04830' => 'ccan', 'Cc03_g04850' => 'ccan', 'CDE02G4469' => 'cde', 'CDE06G0883' => 'cde', 'CDE06G1295' => 'cde', 'CDE06G1390' => 'cde', 'CDE07G0584' => 'cde', 'CDE07G1084' => 'cde', 'CDE08G1259' => 'cde', 'Cfa002341' => 'cfa', 'Cfa024337' => 'cfa', 'Ciclev10004749m.g' => 'ccl', 'Ciclev10006127m.g' => 'ccl', 'Ciclev10019720m.g' => 'ccl', 'Ciclev10022652m.g' => 'ccl', 'CiPaw.01G190400' => 'cil', 'CiPaw.01G190500' => 'cil', 'CiPaw.02G116400' => 'cil', 'CiPaw.02G116500' => 'cil', 'CiPaw.04G183000' => 'cil', 'CiPaw.04G183300' => 'cil', 'ClCG05G004610' => 'cla', 'ClCG05G004620' => 'cla', 'ClCG06G006730' => 'cla', 'ClCG06G006740' => 'cla', 'ClCG11G003690' => 'cla', 'COL.COLO4_08276' => 'col', 'COL.COLO4_08277' => 'col', 'COL.COLO4_15787' => 'col', 'COL.COLO4_15789' => 'col', 'Cpa.g.c44815' => 'cpa', 'Cpa.g.sc52.144' => 'cpa', 'Cpa.g.sc58.46' => 'cpa', 'Cpa.g.sc58.47' => 'cpa', 'Cre08.g360900' => 'cre', 'CsaV3_2G013030' => 'csa', 'CsaV3_2G013050' => 'csa', 'CsaV3_2G015620' => 'csa', 'CsaV3_3G012590' => 'csa', 'CsaV3_3G012600' => 'csa', 'CSS0001641' => 'camsi', 'CSS0008310' => 'camsi', 'CSS0013011' => 'camsi', 'CSS0017147' => 'camsi', 'CSS0022970' => 'camsi', 'CSS0025655' => 'camsi', 'CSS0028665' => 'camsi', 'CSS0029117' => 'camsi', 'CSS0032024' => 'camsi', 'CSS0039681' => 'camsi', 'CSS0046516' => 'camsi', 'CSS0050307' => 'camsi', 'DCAR_005871' => 'dca', 'DCAR_007342' => 'dca', 'DCAR_024228' => 'dca', 'DCAR_027277' => 'dca', 'DCAR_030718' => 'dca', 'Dinv20287' => 'din', 'Dinv22461' => 'din', 'Dinv22464' => 'din', 'Dinv29912' => 'din', 'Dinv29913' => 'din', 'Dinv34580' => 'din', 'Dinv34582' => 'din', 'Dinv44632' => 'din', 'Duzib052G0266' => 'dzi', 'Duzib133G0907' => 'dzi', 'Duzib133G1034' => 'dzi', 'Duzib138G0207' => 'dzi', 'Duzib138G0491' => 'dzi', 'Duzib151G0812' => 'dzi', 'Duzib151G1166' => 'dzi', 'Duzib168G0192' => 'dzi', 'Duzib211G0077' => 'dzi', 'Duzib212G0429' => 'dzi', 'Duzib212G0472' => 'dzi', 'ECA233G2617' => 'eca', 'ECA236G4188' => 'eca', 'ECA240G0936' => 'eca', 'ECA240G1129' => 'eca', 'ECA247G0623' => 'eca', 'EL10Ac5g10451' => 'bvu', 'EL10Ac5g10453' => 'bvu', 'EL10Ac5g10894' => 'bvu', 'Eucgr.H00192' => 'egr', 'Eucgr.H00193' => 'egr', 'Eucgr.H00194' => 'egr', 'Eucgr.J01562' => 'egr', 'Eucgr.K03301' => 'egr', 'FAN02G0632' => 'fan', 'FAN05G5378' => 'fan', 'FAN09G3247' => 'fan', 'FAN12G0435' => 'fan', 'FAN12G2426' => 'fan', 'FAN14G1707' => 'fan', 'FAN14G4725' => 'fan', 'FAN15G2071' => 'fan', 'FAN17G3065' => 'fan', 'FAN19G1376' => 'fan', 'FAN20G0354' => 'fan', 'FAN20G2429' => 'fan', 'FAN20G2658' => 'fan', 'FAN24G2343' => 'fan', 'FAN27G2362' => 'fan', 'FAN28G1765' => 'fan', 'FvH4_1g16020' => 'fve', 'FvH4_2g04890' => 'fve', 'FvH4_2g22270' => 'fve', 'FvH4_4g02630' => 'fve', 'FvH4_4g02640' => 'fve', 'FvH4_6g02650' => 'fve', 'Glyma.02G140600' => 'gma', 'Glyma.03G159900' => 'gma', 'Glyma.05G234800' => 'gma', 'Glyma.07G269600' => 'gma', 'Glyma.08G042300' => 'gma', 'Glyma.10G033500' => 'gma', 'Glyma.10G185200' => 'gma', 'Glyma.17G004300' => 'gma', 'Glyma.19G161900' => 'gma', 'Glyma.20G205100' => 'gma', 'Glyma.20G205200' => 'gma', 'Gohir.A01G139101' => 'ghi', 'Gohir.A02G035600' => 'ghi', 'Gohir.A02G117901' => 'ghi', 'Gohir.A07G210100' => 'ghi', 'Gohir.A07G210200' => 'ghi', 'Gohir.A08G061100' => 'ghi', 'Gohir.A09G223000' => 'ghi', 'Gohir.A09G223100' => 'ghi', 'Gohir.A10G113900' => 'ghi', 'Gohir.A10G114000' => 'ghi', 'Gohir.D02G042300' => 'ghi', 'Gohir.D07G216100' => 'ghi', 'Gohir.D07G216200' => 'ghi', 'Gohir.D08G070400' => 'ghi', 'Gohir.D09G225000' => 'ghi', 'Gohir.D09G225100' => 'ghi', 'Gohir.D10G152300' => 'ghi', 'Gohir.D10G153200' => 'ghi', 'Gohir.D11G133701' => 'ghi', 'Gorai.004G074100' => 'gra', 'Gorai.005G046800' => 'gra', 'Gorai.006G246500' => 'gra', 'Gorai.006G246600' => 'gra', 'Gorai.007G142900' => 'gra', 'Gorai.011G171000' => 'gra', 'Gorai.011G171100' => 'gra', 'Gorai.013G104300' => 'gra', 'Gorai.013G104400' => 'gra', 'GSVIVG01000754001' => 'vvi', 'GSVIVG01000756001' => 'vvi', 'GSVIVG01010903001' => 'vvi', 'GSVIVG01017623001' => 'vvi', 'GSVIVG01018113001' => 'vvi', 'GSVIVG01018116001' => 'vvi', 'GSVIVG01018118001' => 'vvi', 'HanXRQChr03g0076211' => 'han', 'HanXRQChr03g0092431' => 'han', 'HanXRQChr03g0092441' => 'han', 'HanXRQChr03g0092591' => 'han', 'HanXRQChr03g0092671' => 'han', 'HanXRQChr03g0092681' => 'han', 'HanXRQChr03g0092691' => 'han', 'HanXRQChr03g0092701' => 'han', 'HanXRQChr03g0092721' => 'han', 'HanXRQChr03g0092731' => 'han', 'HanXRQChr04g0113681' => 'han', 'HanXRQChr10g0281371' => 'han', 'HanXRQChr11g0337141' => 'han', 'HanXRQChr13g0424521' => 'han', 'HanXRQChr13g0424531' => 'han', 'HanXRQChr13g0424541' => 'han', 'HanXRQChr16g0498221' => 'han', 'Haze_04377' => 'cav', 'Haze_11298' => 'cav', 'Haze_24547' => 'cav', 'Haze_24550' => 'cav', 'Haze_26587' => 'cav', 'Hma1.2p1_0650F.1_g195410' => 'hma', 'Hma1.2p1_0893F.1_g233470' => 'hma', 'HPP92_006508' => 'vpl', 'HPP92_024780' => 'vpl', 'Hund02688' => 'sun', 'Hund09380' => 'sun', 'Hund09381' => 'sun', 'Hund09832' => 'sun', 'Hund09833' => 'sun', 'Hund11351' => 'sun', 'Hund11513' => 'sun', 'Lalb_Chr06g0162591' => 'lal', 'Lalb_Chr06g0162601' => 'lal', 'Lalb_Chr06g0169321' => 'lal', 'Lalb_Chr09g0330951' => 'lal', 'Lalb_Chr16g0387631' => 'lal', 'Lalb_Chr21g0306241' => 'lal', 'Lalb_Chr25g0290051' => 'lal', 'Lalb_Chr25g0290061' => 'lal', 'Lalb_Chr25g0290071' => 'lal', 'Lj1g0003876' => 'lja', 'Lj1P1207T36' => 'lonja', 'Lj2C1156G12' => 'lonja', 'Lj3A793G39' => 'lonja', 'Lj3C580G2' => 'lonja', 'Lj3C780G2' => 'lonja', 'Lj3C780T4' => 'lonja', 'Lj3C793G9' => 'lonja', 'Lj4g0012960' => 'lja', 'Lj5g0021252' => 'lja', 'Lj5g0021484' => 'lja', 'Lj5g0024528' => 'lja', 'Lj6A399T12' => 'lonja', 'Lj6A656G65' => 'lonja', 'Lsat_1_v5_gn_3_125500' => 'lsa', 'Lsat_1_v5_gn_3_125540' => 'lsa', 'Lsat_1_v5_gn_5_72701' => 'lsa', 'Lsat_1_v5_gn_8_91560' => 'lsa', 'Lsat_1_v5_gn_9_9640' => 'lsa', 'Manes.01G200600' => 'mes', 'Manes.01G200700' => 'mes', 'Manes.03G168900' => 'mes', 'Manes.03G169000' => 'mes', 'Manes.05G085801' => 'mes', 'Manes.05G086200' => 'mes', 'Manes.15G036700' => 'mes', 'Manes.15G036900' => 'mes', 'Mapoly0004s0172' => 'mpo', 'Mapoly0023s0001' => 'mpo', 'Mapoly0142s0012' => 'mpo', 'MBI01_g32854_MAGBIO' => 'mbi', 'MBI11_g24427_MAGBIO' => 'mbi', 'MBI11_g47319_MAGBIO' => 'mbi', 'MCO01G433' => 'mco', 'MD00G1187800' => 'mdo', 'MD04G1226500' => 'mdo', 'MD05G1203900' => 'mdo', 'MD10G1191100' => 'mdo', 'MD12G1243500' => 'mdo', 'MD13G1207000' => 'mdo', 'MD13G1207100' => 'mdo', 'MD16G1208600' => 'mdo', 'Medtr1g050352' => 'mtr', 'Medtr1g070385' => 'mtr', 'Medtr1g070450' => 'mtr', 'Medtr1g075200' => 'mtr', 'Medtr1g075250' => 'mtr', 'Medtr1g075260' => 'mtr', 'Medtr1g475250' => 'mtr', 'Medtr4g075450' => 'mtr', 'Medtr7g096300' => 'mtr', 'Medtr8g105110' => 'mtr', 'MELO3C006470.2' => 'cme', 'MELO3C006471.2' => 'cme', 'MELO3C020772.2' => 'cme', 'MELO3C026780.2' => 'cme', 'MELO3C026781.2' => 'cme', 'Migut.D00390' => 'egut', 'Migut.G00435' => 'egut', 'Migut.G00436' => 'egut', 'Migut.G00718' => 'egut', 'MSTRG.21891' => 'ama', 'MSTRG.26910' => 'ama', 'MSTRG.4099' => 'ama', 'MSTRG.9925' => 'ama', 'Nitab4.5_0000165g0010' => 'nta', 'Nitab4.5_0000209g0180' => 'nta', 'Nitab4.5_0000244g0440' => 'nta', 'Nitab4.5_0000525g0220' => 'nta', 'Nitab4.5_0001597g0020' => 'nta', 'Nitab4.5_0001878g0040' => 'nta', 'Nitab4.5_0001878g0060' => 'nta', 'Nitab4.5_0002838g0100' => 'nta', 'Nitab4.5_0002838g0120' => 'nta', 'Nitab4.5_0004798g0030' => 'nta', 'Nitab4.5_0005420g0010' => 'nta', 'Nitab4.5_0005507g0010' => 'nta', 'Nitab4.5_0005574g0020' => 'nta', 'Nitab4.5_0005838g0010' => 'nta', 'Nitab4.5_0010580g0020' => 'nta', 'Nn1g02599' => 'nnu', 'Nn1g02608' => 'nnu', 'Nn3g17742' => 'nnu', 'Nn3g19534' => 'nnu', 'Nn3g19535' => 'nnu', 'Oeu008790.1' => 'oeu', 'Oeu008792.1' => 'oeu', 'Oeu032590.1' => 'oeu', 'Oeu035349.1' => 'oeu', 'Oeu049791.1' => 'oeu', 'Os01g0774500' => 'osa', 'Os03g0628800' => 'osa', 'Os03g0798600' => 'osa', 'Os05g0508800' => 'osa', 'Peaxi162Scf00036g02018' => 'pax', 'Peaxi162Scf00578g00032' => 'pax', 'Peaxi162Scf00578g00317' => 'pax', 'Peaxi162Scf00785g00114' => 'pax', 'Peaxi162Scf00813g00119' => 'pax', 'Peaxi162Scf00906g00227' => 'pax', 'PGR004G0875' => 'pgr', 'PGR004G2424' => 'pgr', 'PGR031G1239' => 'pgr', 'PGR031G2474' => 'pgr', 'PGR044G0423' => 'pgr', 'PGSC0003DMG400001128' => 'stu', 'PGSC0003DMG400007336' => 'stu', 'PGSC0003DMG400016318' => 'stu', 'PGSC0003DMG400016319' => 'stu', 'PGSC0003DMG400018074' => 'stu', 'Phvul.001G157700' => 'pvu', 'Phvul.002G148550' => 'pvu', 'Phvul.002G320200' => 'pvu', 'Phvul.003G089200' => 'pvu', 'Phvul.007G126000' => 'pvu', 'Phvul.007G126100' => 'pvu', 'Phvul.007G178000' => 'pvu', 'Phvul.007G178200' => 'pvu', 'Potri.002G043000' => 'ptr', 'Potri.002G043200' => 'ptr', 'Potri.003G123750' => 'ptr', 'Potri.005G055401' => 'ptr', 'Potri.005G219700' => 'ptr', 'Potri.005G220000' => 'ptr', 'Potri.008G161901' => 'ptr', 'Potri.008G162000' => 'ptr', 'Potri.008G162400' => 'ptr', 'Potri.010G076900' => 'ptr', 'Pp3c12_9180' => 'ppa', 'Pp3c13_19770' => 'ppa', 'Pp3c14_22950' => 'ppa', 'Pp3c16_12160' => 'ppa', 'Pp3c27_7820' => 'ppa', 'Pp3c2_3490' => 'ppa', 'Pp3c3_23700' => 'ppa', 'Pp3c3_36520' => 'ppa', 'Pp3c4_15250' => 'ppa', 'PRCOL_00007002' => 'pco', 'Prupe.1G030600' => 'ppe', 'Prupe.1G030700' => 'ppe', 'Prupe.6G345200' => 'ppe', 'Prupe.8G230300' => 'ppe', 'Prupe.8G230500' => 'ppe', 'Psat3g059600' => 'psa', 'Psat5g200920' => 'psa', 'Psat6g056440' => 'psa', 'Psat6g057360' => 'psa', 'Psat6g134120' => 'psa', 'Psat6g134160' => 'psa', 'Psat7g008640' => 'psa', 'Psat7g185240' => 'psa', 'PSO017G1330' => 'pso', 'PSO063G6097' => 'pso', 'PSO170G0835' => 'pso', 'PSO170G2499' => 'pso', 'PSO210G5058' => 'pso', 'PSO210G6154' => 'pso', 'PSO585G0031' => 'pso', 'PSO832G0264' => 'pso', 'PSO832G4288' => 'pso', 'QL03p027355' => 'qlo', 'QL03p027430' => 'qlo', 'QL04p081380' => 'qlo', 'QL06p015642' => 'qlo', 'QL06p015650' => 'qlo', 'QL06p015686' => 'qlo', 'QL12p042927' => 'qlo', 'QL93p1863_0035' => 'qlo', 'RcHm_v2.0_Chr3g0450581' => 'rch', 'RcHm_v2.0_Chr4g0390371' => 'rch', 'RcHm_v2.0_Chr4g0390381' => 'rch', 'RcHm_v2.0_Chr4g0390491' => 'rch', 'RcHm_v2.0_Chr4g0390501' => 'rch', 'RcHm_v2.0_Chr6g0289231' => 'rch', 'Rhsim04G0190400' => 'rsi', 'Rhsim04G0190500' => 'rsi', 'Rhsim04G0190600' => 'rsi', 'Rhsim13G0031400' => 'rsi', 'Rhsim13G0165600' => 'rsi', 'RhsimUnG0114600' => 'rsi', 'RhsimUnG0114700' => 'rsi', 'Sabra02G0034800' => 'sbr', 'Sabra02G0035100' => 'sbr', 'Sabra05G0168600' => 'sbr', 'Sabra05G0168800' => 'sbr', 'Sabra08G0123700' => 'sbr', 'Sabra10G0031900' => 'sbr', 'Sabra13G0039000' => 'sbr', 'SalBow2G0782' => 'sbo', 'SalBow2G1403' => 'sbo', 'SalBow4G0074' => 'sbo', 'SalBow4G2635' => 'sbo', 'SalBow5G3010' => 'sbo', 'Sc05g0000870' => 'sci', 'Sc05g0000890' => 'sci', 'Sc13g0005000' => 'sci', 'Sc13g0005030' => 'sci', 'Sc19g0003790' => 'sci', 'Sc19g0003800' => 'sci', 'Sed0003467' => 'sed', 'Sed0009355' => 'sed', 'Sed0009894' => 'sed', 'Sed0011972' => 'sed', 'Sed0021483' => 'sed', 'Sed0021750' => 'sed', 'Sed0026279' => 'sed', 'SEGI_05312' => 'sgi', 'SEGI_10112' => 'sgi', 'SEGI_15835' => 'sgi', 'SEGI_30386' => 'sgi', 'SEGI_34122' => 'sgi', 'SEGI_35063' => 'sgi', 'SGA_v2.0_scaffold101G29794' => 'sas', 'SGA_v2.0_scaffold1G00573' => 'sas', 'SGA_v2.0_scaffold79G25637' => 'sas', 'SGA_v2.0_scaffold88G27283' => 'sas', 'SGA_v2.0_scaffold88G27285' => 'sas', 'SGA_v2.0_scaffold88G27331' => 'sas', 'SHI09937' => 'shi', 'SMO119G0302' => 'smo', 'SMO137G0231' => 'smo', 'SMO367G1151' => 'smo', 'Solyc02g082000.3' => 'sly', 'Solyc06g031670.3' => 'sly', 'Solyc06g053810.3' => 'sly', 'Solyc07g025457.1' => 'sly', 'Solyc08g059740.1' => 'sly', 'Solyc08g059750.3' => 'sly', 'Solyc09g083370.3' => 'sly', 'Solyc12g038950.3' => 'sly', 'Sopen02g026630' => 'spe', 'Sopen06g018930' => 'spe', 'Sopen06g018940' => 'spe', 'Sopen08g009460' => 'spe', 'Sopen09g032290' => 'spe', 'Sp1g03080' => 'spa', 'Sp1g03090' => 'spa', 'Sp1g05480' => 'spa', 'Sp2g07860' => 'spa', 'Sp2g08430' => 'spa', 'Sp2g08440' => 'spa', 'Sp2g26200' => 'spa', 'Sp4g13170' => 'spa', 'Sp6g33840' => 'spa', 'SpUn1204_0010' => 'spa', 'TAR365G0908' => 'tar', 'TAR381G1270' => 'tar', 'TAR381G1651' => 'tar', 'TAR625G1131' => 'tar', 'TAR633G0962' => 'tar', 'TAR633G1729' => 'tar', 'TAR633G1864' => 'tar', 'TAR636G0221' => 'tar', 'TAR636G0314' => 'tar', 'TAR636G3202' => 'tar', 'THA.LOC104800805' => 'tha', 'THA.LOC104801096' => 'tha', 'THA.LOC104801555' => 'tha', 'THA.LOC104808491' => 'tha', 'THA.LOC104808595' => 'tha', 'THA.LOC104815985' => 'tha', 'THA.LOC104822250' => 'tha', 'THA.LOC104826071' => 'tha', 'Thecc.01G265200' => 'tca', 'Thecc.01G265300' => 'tca', 'Thecc.01G265700' => 'tca', 'Thecc.03G109100' => 'tca', 'Thecc.04G245900' => 'tca', 'Thecc.04G246000' => 'tca', 'Thhalv10003334m.g' => 'esa', 'Thhalv10005508m.g' => 'esa', 'Thhalv10005643m.g' => 'esa', 'Thhalv10007316m.g' => 'esa', 'Thhalv10009006m.g' => 'esa', 'Thhalv10009309m.g' => 'esa', 'Thhalv10014917m.g' => 'esa', 'Thhalv10014919m.g' => 'esa', 'Thhalv10015393m.g' => 'esa', 'Thhalv10016515m.g' => 'esa', 'Thhalv10029242m.g' => 'esa', 'TPR.G16654' => 'tpr', 'TPR.G20589' => 'tpr', 'TPR.G23029' => 'tpr', 'TPR.G27731' => 'tpr', 'TPR.G28889' => 'tpr', 'TPR.G28899' => 'tpr', 'TPR.G30846' => 'tpr', 'TPR.G5452' => 'tpr', 'TPR.G5713' => 'tpr', 'TPR.G9046' => 'tpr', 'TPR.G9061' => 'tpr', 'TWI09G1075' => 'twi', 'TWI12G0806' => 'twi', 'TWI18G0108' => 'twi', 'TWI53G1361' => 'twi', 'TWI73G0185' => 'twi', 'TWI73G0427' => 'twi', 'unitig_37.g12001' => 'ugi', 'unitig_747.g21660' => 'ugi', 'unitig_748.g7232' => 'ugi', 'unitig_748.g7315' => 'ugi', 'unitig_85.g27262' => 'ugi', 'unitig_92.g28220' => 'ugi', 'vmacro02632' => 'vma', 'vmacro08410' => 'vma', 'vmacro08411' => 'vma', 'vmacro15407' => 'vma', 'VMungo0251G3619' => 'vmu', 'VMungo0720G1204' => 'vmu', 'VMungo0720G1918' => 'vmu', 'VMungo0720G2387' => 'vmu', 'VMungo0720G2961' => 'vmu', 'VMungo1215G2154' => 'vmu', 'VMungo1383G2411' => 'vmu', 'Zm00001eb051130' => 'zma', 'Zm00001eb116830' => 'zma', 'Zm00001eb116850' => 'zma', 'Zm00001eb151740' => 'zma', 'Zm00001eb292360' => 'zma', 'Zm00001eb301640' => 'zma' ), 'gf_id' => 'HOM05D000856', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000856' ), 'data_identifier' => 'HOM05D000856', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000856', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p00010' => 'bna', 'A03p04160' => 'bna', 'A03p17160' => 'bna', 'A04p23370' => 'bna', 'A05p14860' => 'bna', 'A08p37020' => 'bna', 'A09p08050' => 'bna', 'A09p66800' => 'bna', 'A09p67940' => 'bna', 'A10p02680' => 'bna', 'A10p05320' => 'bna', 'Aa31LG1G20560' => 'aar', 'Aa31LG1G20610' => 'aar', 'Aa31LG1G7810' => 'aar', 'Aa31LG5G3590' => 'aar', 'Aa31LG5G6140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3819' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4683' => 'aag', 'Actinidia04480' => 'ach', 'Actinidia05466' => 'ach', 'Actinidia08445' => 'ach', 'Actinidia21170' => 'ach', 'Actinidia24812' => 'ach', 'Actinidia24951' => 'ach', 'Actinidia40088' => 'ach', 'Ah.02g111660' => 'amhyb', 'Ah.11g048900' => 'amhyb', 'Ah.11g049910' => 'amhyb', 'AL1G13870' => 'aly', 'AL1G13880' => 'aly', 'AL1G16760' => 'aly', 'AL390U10020' => 'aly', 'AL4G25520' => 'aly', 'AL6G19890' => 'aly', 'AL6G19900' => 'aly', 'AL6G19910' => 'aly', 'AL8G40100' => 'aly', 'Aqoxy2G03562' => 'aox', 'Aqoxy5G00316' => 'aox', 'Aqoxy5G00926' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1628KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1H403S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2FU6SJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.882I6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8YRY2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YN1SN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AF70II' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZA8L1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F916KL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHRD8H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KTZ8QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S22EMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8M29T' => 'arhy', 'AT1G04270' => 'ath', 'AT1G04280' => 'ath', 'AT1G06750' => 'ath', 'AT1G33850' => 'ath', 'AT2G30630' => 'ath', 'AT5G09490' => 'ath', 'AT5G09500' => 'ath', 'AT5G09510' => 'ath', 'AT5G43640' => 'ath', 'AT5G63070' => 'ath', 'ATR0605G315' => 'atr', 'Atru.chr11.175' => 'acertr', 'Atru.chr11.653' => 'acertr', 'Atru.chr3.1616' => 'acertr', 'Atru.chr4.2230' => 'acertr', 'Atru.chr4.2232' => 'acertr', 'Atru.chr5.1598' => 'acertr', 'Atru.chr5.1600' => 'acertr', 'Atru.chr5.2188' => 'acertr', 'AUR62008326' => 'cqu', 'AUR62011922' => 'cqu', 'AUR62011924' => 'cqu', 'AUR62021771' => 'cqu', 'AUR62032237' => 'cqu', 'AUR62032240' => 'cqu', 'BcaB01g05572' => 'bca', 'BcaB02g10337' => 'bca', 'BcaB04g19944' => 'bca', 'BcaB05g21548' => 'bca', 'BcaB05g21549' => 'bca', 'BcaB05g23227' => 'bca', 'BcaB06g26256' => 'bca', 'BcaB06g26257' => 'bca', 'BcaB06g28379' => 'bca', 'BcaC02g11159' => 'bca', 'BcaC03g13258' => 'bca', 'BcaC03g13259' => 'bca', 'BcaC05g24456' => 'bca', 'BcaC05g24457' => 'bca', 'BcaC07g36922' => 'bca', 'BcaC07g36923' => 'bca', 'BcaC07g42050' => 'bca', 'BcaC07g42176' => 'bca', 'BcaC07g42195' => 'bca', 'BcaC07g42196' => 'bca', 'BcaNung06674' => 'bca', 'BolC2t06351H' => 'bol', 'BolC2t06352H' => 'bol', 'BolC3t12993H' => 'bol', 'BolC4t23525H' => 'bol', 'BolC4t27475H' => 'bol', 'BolC5t29025H' => 'bol', 'BolC5t29026H' => 'bol', 'BolC8t46898H' => 'bol', 'BolC8t46899H' => 'bol', 'BolC8t52630H' => 'bol', 'BolC8t52765H' => 'bol', 'BolC9t53824H' => 'bol', 'BraA03t09760Z' => 'bra', 'BraA03t10990Z' => 'bra', 'BraA05t20413Z' => 'bra', 'BraA08t35602Z' => 'bra', 'BraA09t36458Z' => 'bra', 'BraA09t42018Z' => 'bra', 'BraA09t42129Z' => 'bra', 'BraA10t42536Z' => 'bra', 'BraA10t42537Z' => 'bra', 'C01p10690' => 'bna', 'C02p03890' => 'bna', 'C02p03900' => 'bna', 'C03p04620' => 'bna', 'C04p19870' => 'bna', 'C04p59670' => 'bna', 'C05p02460' => 'bna', 'C05p02470' => 'bna', 'C08p00980' => 'bna', 'C08p00990' => 'bna', 'C08p51030' => 'bna', 'C08p52360' => 'bna', 'C09p09120' => 'bna', 'CAN.G19.15' => 'can', 'CAN.G251.10' => 'can', 'CAN.G251.9' => 'can', 'CAN.G398.24' => 'can', 'CAN.G410.32' => 'can', 'CAN.G881.2' => 'can', 'CANSAT01G3025' => 'cansat', 'CANSAT78G1211' => 'cansat', 'CANSAT78G1218' => 'cansat', 'CANSAT78G1521' => 'cansat', 'CANSAT78G1670' => 'cansat', 'CARHR003600' => 'chi', 'CARHR003610' => 'chi', 'CARHR006290' => 'chi', 'CARHR006430' => 'chi', 'CARHR124110' => 'chi', 'CARHR203870' => 'chi', 'CARHR203880' => 'chi', 'CARHR203890' => 'chi', 'CARHR276880' => 'chi', 'Carub.0001s0346' => 'cru', 'Carub.0001s0347' => 'cru', 'Carub.0001s0607' => 'cru', 'Carub.0003s2768' => 'cru', 'Carub.0003s2769' => 'cru', 'Carub.0004s1178' => 'cru', 'Carub.0006s0806' => 'cru', 'Carub.0006s0807' => 'cru', 'Carub.0006s0808' => 'cru', 'Carub.0008s0501' => 'cru', 'Carub.0008s2379' => 'cru', 'Ca_08655_v3' => 'car', 'Ca_08922_v3' => 'car', 'Ca_08923_v3' => 'car', 'Ca_09119_v3' => 'car', 'Ca_09703_v3' => 'car', 'Ca_09705_v3' => 'car', 'Ca_09835_v3' => 'car', 'Ca_26403_v3' => 'car', 'Ca_30719_v3' => 'car', 'CBR_g17958' => 'cbr', 'CBR_g40516' => 'cbr', 'Cc00_g05350' => 'ccan', 'Cc01_g18690' => 'ccan', 'Cc03_g04830' => 'ccan', 'Cc03_g04850' => 'ccan', 'CDE02G4469' => 'cde', 'CDE06G0883' => 'cde', 'CDE06G1295' => 'cde', 'CDE06G1390' => 'cde', 'CDE07G0584' => 'cde', 'CDE07G1084' => 'cde', 'CDE08G1259' => 'cde', 'Cfa002341' => 'cfa', 'Cfa024337' => 'cfa', 'Ciclev10004749m.g' => 'ccl', 'Ciclev10006127m.g' => 'ccl', 'Ciclev10019720m.g' => 'ccl', 'Ciclev10022652m.g' => 'ccl', 'CiPaw.01G190400' => 'cil', 'CiPaw.01G190500' => 'cil', 'CiPaw.02G116400' => 'cil', 'CiPaw.02G116500' => 'cil', 'CiPaw.04G183000' => 'cil', 'CiPaw.04G183300' => 'cil', 'ClCG05G004610' => 'cla', 'ClCG05G004620' => 'cla', 'ClCG06G006730' => 'cla', 'ClCG06G006740' => 'cla', 'ClCG11G003690' => 'cla', 'COL.COLO4_08276' => 'col', 'COL.COLO4_08277' => 'col', 'COL.COLO4_15787' => 'col', 'COL.COLO4_15789' => 'col', 'Cpa.g.c44815' => 'cpa', 'Cpa.g.sc52.144' => 'cpa', 'Cpa.g.sc58.46' => 'cpa', 'Cpa.g.sc58.47' => 'cpa', 'Cre08.g360900' => 'cre', 'CsaV3_2G013030' => 'csa', 'CsaV3_2G013050' => 'csa', 'CsaV3_2G015620' => 'csa', 'CsaV3_3G012590' => 'csa', 'CsaV3_3G012600' => 'csa', 'CSS0001641' => 'camsi', 'CSS0008310' => 'camsi', 'CSS0013011' => 'camsi', 'CSS0017147' => 'camsi', 'CSS0022970' => 'camsi', 'CSS0025655' => 'camsi', 'CSS0028665' => 'camsi', 'CSS0029117' => 'camsi', 'CSS0032024' => 'camsi', 'CSS0039681' => 'camsi', 'CSS0046516' => 'camsi', 'CSS0050307' => 'camsi', 'DCAR_005871' => 'dca', 'DCAR_007342' => 'dca', 'DCAR_024228' => 'dca', 'DCAR_027277' => 'dca', 'DCAR_030718' => 'dca', 'Dinv20287' => 'din', 'Dinv22461' => 'din', 'Dinv22464' => 'din', 'Dinv29912' => 'din', 'Dinv29913' => 'din', 'Dinv34580' => 'din', 'Dinv34582' => 'din', 'Dinv44632' => 'din', 'Duzib052G0266' => 'dzi', 'Duzib133G0907' => 'dzi', 'Duzib133G1034' => 'dzi', 'Duzib138G0207' => 'dzi', 'Duzib138G0491' => 'dzi', 'Duzib151G0812' => 'dzi', 'Duzib151G1166' => 'dzi', 'Duzib168G0192' => 'dzi', 'Duzib211G0077' => 'dzi', 'Duzib212G0429' => 'dzi', 'Duzib212G0472' => 'dzi', 'ECA233G2617' => 'eca', 'ECA236G4188' => 'eca', 'ECA240G0936' => 'eca', 'ECA240G1129' => 'eca', 'ECA247G0623' => 'eca', 'EL10Ac5g10451' => 'bvu', 'EL10Ac5g10453' => 'bvu', 'EL10Ac5g10894' => 'bvu', 'Eucgr.H00192' => 'egr', 'Eucgr.H00193' => 'egr', 'Eucgr.H00194' => 'egr', 'Eucgr.J01562' => 'egr', 'Eucgr.K03301' => 'egr', 'FAN02G0632' => 'fan', 'FAN05G5378' => 'fan', 'FAN09G3247' => 'fan', 'FAN12G0435' => 'fan', 'FAN12G2426' => 'fan', 'FAN14G1707' => 'fan', 'FAN14G4725' => 'fan', 'FAN15G2071' => 'fan', 'FAN17G3065' => 'fan', 'FAN19G1376' => 'fan', 'FAN20G0354' => 'fan', 'FAN20G2429' => 'fan', 'FAN20G2658' => 'fan', 'FAN24G2343' => 'fan', 'FAN27G2362' => 'fan', 'FAN28G1765' => 'fan', 'FvH4_1g16020' => 'fve', 'FvH4_2g04890' => 'fve', 'FvH4_2g22270' => 'fve', 'FvH4_4g02630' => 'fve', 'FvH4_4g02640' => 'fve', 'FvH4_6g02650' => 'fve', 'Glyma.02G140600' => 'gma', 'Glyma.03G159900' => 'gma', 'Glyma.05G234800' => 'gma', 'Glyma.07G269600' => 'gma', 'Glyma.08G042300' => 'gma', 'Glyma.10G033500' => 'gma', 'Glyma.10G185200' => 'gma', 'Glyma.17G004300' => 'gma', 'Glyma.19G161900' => 'gma', 'Glyma.20G205100' => 'gma', 'Glyma.20G205200' => 'gma', 'Gohir.A01G139101' => 'ghi', 'Gohir.A02G035600' => 'ghi', 'Gohir.A02G117901' => 'ghi', 'Gohir.A07G210100' => 'ghi', 'Gohir.A07G210200' => 'ghi', 'Gohir.A08G061100' => 'ghi', 'Gohir.A09G223000' => 'ghi', 'Gohir.A09G223100' => 'ghi', 'Gohir.A10G113900' => 'ghi', 'Gohir.A10G114000' => 'ghi', 'Gohir.D02G042300' => 'ghi', 'Gohir.D07G216100' => 'ghi', 'Gohir.D07G216200' => 'ghi', 'Gohir.D08G070400' => 'ghi', 'Gohir.D09G225000' => 'ghi', 'Gohir.D09G225100' => 'ghi', 'Gohir.D10G152300' => 'ghi', 'Gohir.D10G153200' => 'ghi', 'Gohir.D11G133701' => 'ghi', 'Gorai.004G074100' => 'gra', 'Gorai.005G046800' => 'gra', 'Gorai.006G246500' => 'gra', 'Gorai.006G246600' => 'gra', 'Gorai.007G142900' => 'gra', 'Gorai.011G171000' => 'gra', 'Gorai.011G171100' => 'gra', 'Gorai.013G104300' => 'gra', 'Gorai.013G104400' => 'gra', 'GSVIVG01000754001' => 'vvi', 'GSVIVG01000756001' => 'vvi', 'GSVIVG01010903001' => 'vvi', 'GSVIVG01017623001' => 'vvi', 'GSVIVG01018113001' => 'vvi', 'GSVIVG01018116001' => 'vvi', 'GSVIVG01018118001' => 'vvi', 'HanXRQChr03g0076211' => 'han', 'HanXRQChr03g0092431' => 'han', 'HanXRQChr03g0092441' => 'han', 'HanXRQChr03g0092591' => 'han', 'HanXRQChr03g0092671' => 'han', 'HanXRQChr03g0092681' => 'han', 'HanXRQChr03g0092691' => 'han', 'HanXRQChr03g0092701' => 'han', 'HanXRQChr03g0092721' => 'han', 'HanXRQChr03g0092731' => 'han', 'HanXRQChr04g0113681' => 'han', 'HanXRQChr10g0281371' => 'han', 'HanXRQChr11g0337141' => 'han', 'HanXRQChr13g0424521' => 'han', 'HanXRQChr13g0424531' => 'han', 'HanXRQChr13g0424541' => 'han', 'HanXRQChr16g0498221' => 'han', 'Haze_04377' => 'cav', 'Haze_11298' => 'cav', 'Haze_24547' => 'cav', 'Haze_24550' => 'cav', 'Haze_26587' => 'cav', 'Hma1.2p1_0650F.1_g195410' => 'hma', 'Hma1.2p1_0893F.1_g233470' => 'hma', 'HPP92_006508' => 'vpl', 'HPP92_024780' => 'vpl', 'Hund02688' => 'sun', 'Hund09380' => 'sun', 'Hund09381' => 'sun', 'Hund09832' => 'sun', 'Hund09833' => 'sun', 'Hund11351' => 'sun', 'Hund11513' => 'sun', 'Lalb_Chr06g0162591' => 'lal', 'Lalb_Chr06g0162601' => 'lal', 'Lalb_Chr06g0169321' => 'lal', 'Lalb_Chr09g0330951' => 'lal', 'Lalb_Chr16g0387631' => 'lal', 'Lalb_Chr21g0306241' => 'lal', 'Lalb_Chr25g0290051' => 'lal', 'Lalb_Chr25g0290061' => 'lal', 'Lalb_Chr25g0290071' => 'lal', 'Lj1g0003876' => 'lja', 'Lj1P1207T36' => 'lonja', 'Lj2C1156G12' => 'lonja', 'Lj3A793G39' => 'lonja', 'Lj3C580G2' => 'lonja', 'Lj3C780G2' => 'lonja', 'Lj3C780T4' => 'lonja', 'Lj3C793G9' => 'lonja', 'Lj4g0012960' => 'lja', 'Lj5g0021252' => 'lja', 'Lj5g0021484' => 'lja', 'Lj5g0024528' => 'lja', 'Lj6A399T12' => 'lonja', 'Lj6A656G65' => 'lonja', 'Lsat_1_v5_gn_3_125500' => 'lsa', 'Lsat_1_v5_gn_3_125540' => 'lsa', 'Lsat_1_v5_gn_5_72701' => 'lsa', 'Lsat_1_v5_gn_8_91560' => 'lsa', 'Lsat_1_v5_gn_9_9640' => 'lsa', 'Manes.01G200600' => 'mes', 'Manes.01G200700' => 'mes', 'Manes.03G168900' => 'mes', 'Manes.03G169000' => 'mes', 'Manes.05G085801' => 'mes', 'Manes.05G086200' => 'mes', 'Manes.15G036700' => 'mes', 'Manes.15G036900' => 'mes', 'Mapoly0004s0172' => 'mpo', 'Mapoly0023s0001' => 'mpo', 'Mapoly0142s0012' => 'mpo', 'MBI01_g32854_MAGBIO' => 'mbi', 'MBI11_g24427_MAGBIO' => 'mbi', 'MBI11_g47319_MAGBIO' => 'mbi', 'MCO01G433' => 'mco', 'MD00G1187800' => 'mdo', 'MD04G1226500' => 'mdo', 'MD05G1203900' => 'mdo', 'MD10G1191100' => 'mdo', 'MD12G1243500' => 'mdo', 'MD13G1207000' => 'mdo', 'MD13G1207100' => 'mdo', 'MD16G1208600' => 'mdo', 'Medtr1g050352' => 'mtr', 'Medtr1g070385' => 'mtr', 'Medtr1g070450' => 'mtr', 'Medtr1g075200' => 'mtr', 'Medtr1g075250' => 'mtr', 'Medtr1g075260' => 'mtr', 'Medtr1g475250' => 'mtr', 'Medtr4g075450' => 'mtr', 'Medtr7g096300' => 'mtr', 'Medtr8g105110' => 'mtr', 'MELO3C006470.2' => 'cme', 'MELO3C006471.2' => 'cme', 'MELO3C020772.2' => 'cme', 'MELO3C026780.2' => 'cme', 'MELO3C026781.2' => 'cme', 'Migut.D00390' => 'egut', 'Migut.G00435' => 'egut', 'Migut.G00436' => 'egut', 'Migut.G00718' => 'egut', 'MSTRG.21891' => 'ama', 'MSTRG.26910' => 'ama', 'MSTRG.4099' => 'ama', 'MSTRG.9925' => 'ama', 'Nitab4.5_0000165g0010' => 'nta', 'Nitab4.5_0000209g0180' => 'nta', 'Nitab4.5_0000244g0440' => 'nta', 'Nitab4.5_0000525g0220' => 'nta', 'Nitab4.5_0001597g0020' => 'nta', 'Nitab4.5_0001878g0040' => 'nta', 'Nitab4.5_0001878g0060' => 'nta', 'Nitab4.5_0002838g0100' => 'nta', 'Nitab4.5_0002838g0120' => 'nta', 'Nitab4.5_0004798g0030' => 'nta', 'Nitab4.5_0005420g0010' => 'nta', 'Nitab4.5_0005507g0010' => 'nta', 'Nitab4.5_0005574g0020' => 'nta', 'Nitab4.5_0005838g0010' => 'nta', 'Nitab4.5_0010580g0020' => 'nta', 'Nn1g02599' => 'nnu', 'Nn1g02608' => 'nnu', 'Nn3g17742' => 'nnu', 'Nn3g19534' => 'nnu', 'Nn3g19535' => 'nnu', 'Oeu008790.1' => 'oeu', 'Oeu008792.1' => 'oeu', 'Oeu032590.1' => 'oeu', 'Oeu035349.1' => 'oeu', 'Oeu049791.1' => 'oeu', 'Os01g0774500' => 'osa', 'Os03g0628800' => 'osa', 'Os03g0798600' => 'osa', 'Os05g0508800' => 'osa', 'Peaxi162Scf00036g02018' => 'pax', 'Peaxi162Scf00578g00032' => 'pax', 'Peaxi162Scf00578g00317' => 'pax', 'Peaxi162Scf00785g00114' => 'pax', 'Peaxi162Scf00813g00119' => 'pax', 'Peaxi162Scf00906g00227' => 'pax', 'PGR004G0875' => 'pgr', 'PGR004G2424' => 'pgr', 'PGR031G1239' => 'pgr', 'PGR031G2474' => 'pgr', 'PGR044G0423' => 'pgr', 'PGSC0003DMG400001128' => 'stu', 'PGSC0003DMG400007336' => 'stu', 'PGSC0003DMG400016318' => 'stu', 'PGSC0003DMG400016319' => 'stu', 'PGSC0003DMG400018074' => 'stu', 'Phvul.001G157700' => 'pvu', 'Phvul.002G148550' => 'pvu', 'Phvul.002G320200' => 'pvu', 'Phvul.003G089200' => 'pvu', 'Phvul.007G126000' => 'pvu', 'Phvul.007G126100' => 'pvu', 'Phvul.007G178000' => 'pvu', 'Phvul.007G178200' => 'pvu', 'Potri.002G043000' => 'ptr', 'Potri.002G043200' => 'ptr', 'Potri.003G123750' => 'ptr', 'Potri.005G055401' => 'ptr', 'Potri.005G219700' => 'ptr', 'Potri.005G220000' => 'ptr', 'Potri.008G161901' => 'ptr', 'Potri.008G162000' => 'ptr', 'Potri.008G162400' => 'ptr', 'Potri.010G076900' => 'ptr', 'Pp3c12_9180' => 'ppa', 'Pp3c13_19770' => 'ppa', 'Pp3c14_22950' => 'ppa', 'Pp3c16_12160' => 'ppa', 'Pp3c27_7820' => 'ppa', 'Pp3c2_3490' => 'ppa', 'Pp3c3_23700' => 'ppa', 'Pp3c3_36520' => 'ppa', 'Pp3c4_15250' => 'ppa', 'PRCOL_00007002' => 'pco', 'Prupe.1G030600' => 'ppe', 'Prupe.1G030700' => 'ppe', 'Prupe.6G345200' => 'ppe', 'Prupe.8G230300' => 'ppe', 'Prupe.8G230500' => 'ppe', 'Psat3g059600' => 'psa', 'Psat5g200920' => 'psa', 'Psat6g056440' => 'psa', 'Psat6g057360' => 'psa', 'Psat6g134120' => 'psa', 'Psat6g134160' => 'psa', 'Psat7g008640' => 'psa', 'Psat7g185240' => 'psa', 'PSO017G1330' => 'pso', 'PSO063G6097' => 'pso', 'PSO170G0835' => 'pso', 'PSO170G2499' => 'pso', 'PSO210G5058' => 'pso', 'PSO210G6154' => 'pso', 'PSO585G0031' => 'pso', 'PSO832G0264' => 'pso', 'PSO832G4288' => 'pso', 'QL03p027355' => 'qlo', 'QL03p027430' => 'qlo', 'QL04p081380' => 'qlo', 'QL06p015642' => 'qlo', 'QL06p015650' => 'qlo', 'QL06p015686' => 'qlo', 'QL12p042927' => 'qlo', 'QL93p1863_0035' => 'qlo', 'RcHm_v2.0_Chr3g0450581' => 'rch', 'RcHm_v2.0_Chr4g0390371' => 'rch', 'RcHm_v2.0_Chr4g0390381' => 'rch', 'RcHm_v2.0_Chr4g0390491' => 'rch', 'RcHm_v2.0_Chr4g0390501' => 'rch', 'RcHm_v2.0_Chr6g0289231' => 'rch', 'Rhsim04G0190400' => 'rsi', 'Rhsim04G0190500' => 'rsi', 'Rhsim04G0190600' => 'rsi', 'Rhsim13G0031400' => 'rsi', 'Rhsim13G0165600' => 'rsi', 'RhsimUnG0114600' => 'rsi', 'RhsimUnG0114700' => 'rsi', 'Sabra02G0034800' => 'sbr', 'Sabra02G0035100' => 'sbr', 'Sabra05G0168600' => 'sbr', 'Sabra05G0168800' => 'sbr', 'Sabra08G0123700' => 'sbr', 'Sabra10G0031900' => 'sbr', 'Sabra13G0039000' => 'sbr', 'SalBow2G0782' => 'sbo', 'SalBow2G1403' => 'sbo', 'SalBow4G0074' => 'sbo', 'SalBow4G2635' => 'sbo', 'SalBow5G3010' => 'sbo', 'Sc05g0000870' => 'sci', 'Sc05g0000890' => 'sci', 'Sc13g0005000' => 'sci', 'Sc13g0005030' => 'sci', 'Sc19g0003790' => 'sci', 'Sc19g0003800' => 'sci', 'Sed0003467' => 'sed', 'Sed0009355' => 'sed', 'Sed0009894' => 'sed', 'Sed0011972' => 'sed', 'Sed0021483' => 'sed', 'Sed0021750' => 'sed', 'Sed0026279' => 'sed', 'SEGI_05312' => 'sgi', 'SEGI_10112' => 'sgi', 'SEGI_15835' => 'sgi', 'SEGI_30386' => 'sgi', 'SEGI_34122' => 'sgi', 'SEGI_35063' => 'sgi', 'SGA_v2.0_scaffold101G29794' => 'sas', 'SGA_v2.0_scaffold1G00573' => 'sas', 'SGA_v2.0_scaffold79G25637' => 'sas', 'SGA_v2.0_scaffold88G27283' => 'sas', 'SGA_v2.0_scaffold88G27285' => 'sas', 'SGA_v2.0_scaffold88G27331' => 'sas', 'SHI09937' => 'shi', 'SMO119G0302' => 'smo', 'SMO137G0231' => 'smo', 'SMO367G1151' => 'smo', 'Solyc02g082000.3' => 'sly', 'Solyc06g031670.3' => 'sly', 'Solyc06g053810.3' => 'sly', 'Solyc07g025457.1' => 'sly', 'Solyc08g059740.1' => 'sly', 'Solyc08g059750.3' => 'sly', 'Solyc09g083370.3' => 'sly', 'Solyc12g038950.3' => 'sly', 'Sopen02g026630' => 'spe', 'Sopen06g018930' => 'spe', 'Sopen06g018940' => 'spe', 'Sopen08g009460' => 'spe', 'Sopen09g032290' => 'spe', 'Sp1g03080' => 'spa', 'Sp1g03090' => 'spa', 'Sp1g05480' => 'spa', 'Sp2g07860' => 'spa', 'Sp2g08430' => 'spa', 'Sp2g08440' => 'spa', 'Sp2g26200' => 'spa', 'Sp4g13170' => 'spa', 'Sp6g33840' => 'spa', 'SpUn1204_0010' => 'spa', 'TAR365G0908' => 'tar', 'TAR381G1270' => 'tar', 'TAR381G1651' => 'tar', 'TAR625G1131' => 'tar', 'TAR633G0962' => 'tar', 'TAR633G1729' => 'tar', 'TAR633G1864' => 'tar', 'TAR636G0221' => 'tar', 'TAR636G0314' => 'tar', 'TAR636G3202' => 'tar', 'THA.LOC104800805' => 'tha', 'THA.LOC104801096' => 'tha', 'THA.LOC104801555' => 'tha', 'THA.LOC104808491' => 'tha', 'THA.LOC104808595' => 'tha', 'THA.LOC104815985' => 'tha', 'THA.LOC104822250' => 'tha', 'THA.LOC104826071' => 'tha', 'Thecc.01G265200' => 'tca', 'Thecc.01G265300' => 'tca', 'Thecc.01G265700' => 'tca', 'Thecc.03G109100' => 'tca', 'Thecc.04G245900' => 'tca', 'Thecc.04G246000' => 'tca', 'Thhalv10003334m.g' => 'esa', 'Thhalv10005508m.g' => 'esa', 'Thhalv10005643m.g' => 'esa', 'Thhalv10007316m.g' => 'esa', 'Thhalv10009006m.g' => 'esa', 'Thhalv10009309m.g' => 'esa', 'Thhalv10014917m.g' => 'esa', 'Thhalv10014919m.g' => 'esa', 'Thhalv10015393m.g' => 'esa', 'Thhalv10016515m.g' => 'esa', 'Thhalv10029242m.g' => 'esa', 'TPR.G16654' => 'tpr', 'TPR.G20589' => 'tpr', 'TPR.G23029' => 'tpr', 'TPR.G27731' => 'tpr', 'TPR.G28889' => 'tpr', 'TPR.G28899' => 'tpr', 'TPR.G30846' => 'tpr', 'TPR.G5452' => 'tpr', 'TPR.G5713' => 'tpr', 'TPR.G9046' => 'tpr', 'TPR.G9061' => 'tpr', 'TWI09G1075' => 'twi', 'TWI12G0806' => 'twi', 'TWI18G0108' => 'twi', 'TWI53G1361' => 'twi', 'TWI73G0185' => 'twi', 'TWI73G0427' => 'twi', 'unitig_37.g12001' => 'ugi', 'unitig_747.g21660' => 'ugi', 'unitig_748.g7232' => 'ugi', 'unitig_748.g7315' => 'ugi', 'unitig_85.g27262' => 'ugi', 'unitig_92.g28220' => 'ugi', 'vmacro02632' => 'vma', 'vmacro08410' => 'vma', 'vmacro08411' => 'vma', 'vmacro15407' => 'vma', 'VMungo0251G3619' => 'vmu', 'VMungo0720G1204' => 'vmu', 'VMungo0720G1918' => 'vmu', 'VMungo0720G2387' => 'vmu', 'VMungo0720G2961' => 'vmu', 'VMungo1215G2154' => 'vmu', 'VMungo1383G2411' => 'vmu', 'Zm00001eb051130' => 'zma', 'Zm00001eb116830' => 'zma', 'Zm00001eb116850' => 'zma', 'Zm00001eb151740' => 'zma', 'Zm00001eb292360' => 'zma', 'Zm00001eb301640' => 'zma' ) $gf_id = 'HOM05D000856' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000856' ) $data_identifier = 'HOM05D000856' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 13, 'ath' => (int) 10, 'atr' => (int) 1, 'acertr' => (int) 8, 'cqu' => (int) 6, 'bca' => (int) 21, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 11, 'car' => (int) 9, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 8, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 5, 'fan' => (int) 16, 'fve' => (int) 6, 'gma' => (int) 11, 'ghi' => (int) 19, 'gra' => (int) 9, 'vvi' => (int) 7, 'han' => (int) 17, 'cav' => (int) 5, 'hma' => (int) 2, 'vpl' => (int) 2, 'sun' => (int) 7, 'lal' => (int) 9, 'lja' => (int) 5, 'lonja' => (int) 9, 'lsa' => (int) 5, 'mes' => (int) 8, 'mpo' => (int) 3, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 10, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 15, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 9, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 9, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 6, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 5, 'spa' => (int) 10, 'tar' => (int) 10, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 11, 'tpr' => (int) 11, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 4, 'vmu' => (int) 7, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb301640' $species_info = array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ) $local_species = 'sbo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000856', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p00010' => 'bna', 'A03p04160' => 'bna', 'A03p17160' => 'bna', 'A04p23370' => 'bna', 'A05p14860' => 'bna', 'A08p37020' => 'bna', 'A09p08050' => 'bna', 'A09p66800' => 'bna', 'A09p67940' => 'bna', 'A10p02680' => 'bna', 'A10p05320' => 'bna', 'Aa31LG1G20560' => 'aar', 'Aa31LG1G20610' => 'aar', 'Aa31LG1G7810' => 'aar', 'Aa31LG5G3590' => 'aar', 'Aa31LG5G6140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3819' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4683' => 'aag', 'Actinidia04480' => 'ach', 'Actinidia05466' => 'ach', 'Actinidia08445' => 'ach', 'Actinidia21170' => 'ach', 'Actinidia24812' => 'ach', 'Actinidia24951' => 'ach', 'Actinidia40088' => 'ach', 'Ah.02g111660' => 'amhyb', 'Ah.11g048900' => 'amhyb', 'Ah.11g049910' => 'amhyb', 'AL1G13870' => 'aly', 'AL1G13880' => 'aly', 'AL1G16760' => 'aly', 'AL390U10020' => 'aly', 'AL4G25520' => 'aly', 'AL6G19890' => 'aly', 'AL6G19900' => 'aly', 'AL6G19910' => 'aly', 'AL8G40100' => 'aly', 'Aqoxy2G03562' => 'aox', 'Aqoxy5G00316' => 'aox', 'Aqoxy5G00926' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1628KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1H403S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2FU6SJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.882I6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8YRY2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YN1SN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AF70II' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZA8L1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F916KL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHRD8H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KTZ8QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S22EMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8M29T' => 'arhy', 'AT1G04270' => 'ath', 'AT1G04280' => 'ath', 'AT1G06750' => 'ath', 'AT1G33850' => 'ath', 'AT2G30630' => 'ath', 'AT5G09490' => 'ath', 'AT5G09500' => 'ath', 'AT5G09510' => 'ath', 'AT5G43640' => 'ath', 'AT5G63070' => 'ath', 'ATR0605G315' => 'atr', 'Atru.chr11.175' => 'acertr', 'Atru.chr11.653' => 'acertr', 'Atru.chr3.1616' => 'acertr', 'Atru.chr4.2230' => 'acertr', 'Atru.chr4.2232' => 'acertr', 'Atru.chr5.1598' => 'acertr', 'Atru.chr5.1600' => 'acertr', 'Atru.chr5.2188' => 'acertr', 'AUR62008326' => 'cqu', 'AUR62011922' => 'cqu', 'AUR62011924' => 'cqu', 'AUR62021771' => 'cqu', 'AUR62032237' => 'cqu', 'AUR62032240' => 'cqu', 'BcaB01g05572' => 'bca', 'BcaB02g10337' => 'bca', 'BcaB04g19944' => 'bca', 'BcaB05g21548' => 'bca', 'BcaB05g21549' => 'bca', 'BcaB05g23227' => 'bca', 'BcaB06g26256' => 'bca', 'BcaB06g26257' => 'bca', 'BcaB06g28379' => 'bca', 'BcaC02g11159' => 'bca', 'BcaC03g13258' => 'bca', 'BcaC03g13259' => 'bca', 'BcaC05g24456' => 'bca', 'BcaC05g24457' => 'bca', 'BcaC07g36922' => 'bca', 'BcaC07g36923' => 'bca', 'BcaC07g42050' => 'bca', 'BcaC07g42176' => 'bca', 'BcaC07g42195' => 'bca', 'BcaC07g42196' => 'bca', 'BcaNung06674' => 'bca', 'BolC2t06351H' => 'bol', 'BolC2t06352H' => 'bol', 'BolC3t12993H' => 'bol', 'BolC4t23525H' => 'bol', 'BolC4t27475H' => 'bol', 'BolC5t29025H' => 'bol', 'BolC5t29026H' => 'bol', 'BolC8t46898H' => 'bol', 'BolC8t46899H' => 'bol', 'BolC8t52630H' => 'bol', 'BolC8t52765H' => 'bol', 'BolC9t53824H' => 'bol', 'BraA03t09760Z' => 'bra', 'BraA03t10990Z' => 'bra', 'BraA05t20413Z' => 'bra', 'BraA08t35602Z' => 'bra', 'BraA09t36458Z' => 'bra', 'BraA09t42018Z' => 'bra', 'BraA09t42129Z' => 'bra', 'BraA10t42536Z' => 'bra', 'BraA10t42537Z' => 'bra', 'C01p10690' => 'bna', 'C02p03890' => 'bna', 'C02p03900' => 'bna', 'C03p04620' => 'bna', 'C04p19870' => 'bna', 'C04p59670' => 'bna', 'C05p02460' => 'bna', 'C05p02470' => 'bna', 'C08p00980' => 'bna', 'C08p00990' => 'bna', 'C08p51030' => 'bna', 'C08p52360' => 'bna', 'C09p09120' => 'bna', 'CAN.G19.15' => 'can', 'CAN.G251.10' => 'can', 'CAN.G251.9' => 'can', 'CAN.G398.24' => 'can', 'CAN.G410.32' => 'can', 'CAN.G881.2' => 'can', 'CANSAT01G3025' => 'cansat', 'CANSAT78G1211' => 'cansat', 'CANSAT78G1218' => 'cansat', 'CANSAT78G1521' => 'cansat', 'CANSAT78G1670' => 'cansat', 'CARHR003600' => 'chi', 'CARHR003610' => 'chi', 'CARHR006290' => 'chi', 'CARHR006430' => 'chi', 'CARHR124110' => 'chi', 'CARHR203870' => 'chi', 'CARHR203880' => 'chi', 'CARHR203890' => 'chi', 'CARHR276880' => 'chi', 'Carub.0001s0346' => 'cru', 'Carub.0001s0347' => 'cru', 'Carub.0001s0607' => 'cru', 'Carub.0003s2768' => 'cru', 'Carub.0003s2769' => 'cru', 'Carub.0004s1178' => 'cru', 'Carub.0006s0806' => 'cru', 'Carub.0006s0807' => 'cru', 'Carub.0006s0808' => 'cru', 'Carub.0008s0501' => 'cru', 'Carub.0008s2379' => 'cru', 'Ca_08655_v3' => 'car', 'Ca_08922_v3' => 'car', 'Ca_08923_v3' => 'car', 'Ca_09119_v3' => 'car', 'Ca_09703_v3' => 'car', 'Ca_09705_v3' => 'car', 'Ca_09835_v3' => 'car', 'Ca_26403_v3' => 'car', 'Ca_30719_v3' => 'car', 'CBR_g17958' => 'cbr', 'CBR_g40516' => 'cbr', 'Cc00_g05350' => 'ccan', 'Cc01_g18690' => 'ccan', 'Cc03_g04830' => 'ccan', 'Cc03_g04850' => 'ccan', 'CDE02G4469' => 'cde', 'CDE06G0883' => 'cde', 'CDE06G1295' => 'cde', 'CDE06G1390' => 'cde', 'CDE07G0584' => 'cde', 'CDE07G1084' => 'cde', 'CDE08G1259' => 'cde', 'Cfa002341' => 'cfa', 'Cfa024337' => 'cfa', 'Ciclev10004749m.g' => 'ccl', 'Ciclev10006127m.g' => 'ccl', 'Ciclev10019720m.g' => 'ccl', 'Ciclev10022652m.g' => 'ccl', 'CiPaw.01G190400' => 'cil', 'CiPaw.01G190500' => 'cil', 'CiPaw.02G116400' => 'cil', 'CiPaw.02G116500' => 'cil', 'CiPaw.04G183000' => 'cil', 'CiPaw.04G183300' => 'cil', 'ClCG05G004610' => 'cla', 'ClCG05G004620' => 'cla', 'ClCG06G006730' => 'cla', 'ClCG06G006740' => 'cla', 'ClCG11G003690' => 'cla', 'COL.COLO4_08276' => 'col', 'COL.COLO4_08277' => 'col', 'COL.COLO4_15787' => 'col', 'COL.COLO4_15789' => 'col', 'Cpa.g.c44815' => 'cpa', 'Cpa.g.sc52.144' => 'cpa', 'Cpa.g.sc58.46' => 'cpa', 'Cpa.g.sc58.47' => 'cpa', 'Cre08.g360900' => 'cre', 'CsaV3_2G013030' => 'csa', 'CsaV3_2G013050' => 'csa', 'CsaV3_2G015620' => 'csa', 'CsaV3_3G012590' => 'csa', 'CsaV3_3G012600' => 'csa', 'CSS0001641' => 'camsi', 'CSS0008310' => 'camsi', 'CSS0013011' => 'camsi', 'CSS0017147' => 'camsi', 'CSS0022970' => 'camsi', 'CSS0025655' => 'camsi', 'CSS0028665' => 'camsi', 'CSS0029117' => 'camsi', 'CSS0032024' => 'camsi', 'CSS0039681' => 'camsi', 'CSS0046516' => 'camsi', 'CSS0050307' => 'camsi', 'DCAR_005871' => 'dca', 'DCAR_007342' => 'dca', 'DCAR_024228' => 'dca', 'DCAR_027277' => 'dca', 'DCAR_030718' => 'dca', 'Dinv20287' => 'din', 'Dinv22461' => 'din', 'Dinv22464' => 'din', 'Dinv29912' => 'din', 'Dinv29913' => 'din', 'Dinv34580' => 'din', 'Dinv34582' => 'din', 'Dinv44632' => 'din', 'Duzib052G0266' => 'dzi', 'Duzib133G0907' => 'dzi', 'Duzib133G1034' => 'dzi', 'Duzib138G0207' => 'dzi', 'Duzib138G0491' => 'dzi', 'Duzib151G0812' => 'dzi', 'Duzib151G1166' => 'dzi', 'Duzib168G0192' => 'dzi', 'Duzib211G0077' => 'dzi', 'Duzib212G0429' => 'dzi', 'Duzib212G0472' => 'dzi', 'ECA233G2617' => 'eca', 'ECA236G4188' => 'eca', 'ECA240G0936' => 'eca', 'ECA240G1129' => 'eca', 'ECA247G0623' => 'eca', 'EL10Ac5g10451' => 'bvu', 'EL10Ac5g10453' => 'bvu', 'EL10Ac5g10894' => 'bvu', 'Eucgr.H00192' => 'egr', 'Eucgr.H00193' => 'egr', 'Eucgr.H00194' => 'egr', 'Eucgr.J01562' => 'egr', 'Eucgr.K03301' => 'egr', 'FAN02G0632' => 'fan', 'FAN05G5378' => 'fan', 'FAN09G3247' => 'fan', 'FAN12G0435' => 'fan', 'FAN12G2426' => 'fan', 'FAN14G1707' => 'fan', 'FAN14G4725' => 'fan', 'FAN15G2071' => 'fan', 'FAN17G3065' => 'fan', 'FAN19G1376' => 'fan', 'FAN20G0354' => 'fan', 'FAN20G2429' => 'fan', 'FAN20G2658' => 'fan', 'FAN24G2343' => 'fan', 'FAN27G2362' => 'fan', 'FAN28G1765' => 'fan', 'FvH4_1g16020' => 'fve', 'FvH4_2g04890' => 'fve', 'FvH4_2g22270' => 'fve', 'FvH4_4g02630' => 'fve', 'FvH4_4g02640' => 'fve', 'FvH4_6g02650' => 'fve', 'Glyma.02G140600' => 'gma', 'Glyma.03G159900' => 'gma', 'Glyma.05G234800' => 'gma', 'Glyma.07G269600' => 'gma', 'Glyma.08G042300' => 'gma', 'Glyma.10G033500' => 'gma', 'Glyma.10G185200' => 'gma', 'Glyma.17G004300' => 'gma', 'Glyma.19G161900' => 'gma', 'Glyma.20G205100' => 'gma', 'Glyma.20G205200' => 'gma', 'Gohir.A01G139101' => 'ghi', 'Gohir.A02G035600' => 'ghi', 'Gohir.A02G117901' => 'ghi', 'Gohir.A07G210100' => 'ghi', 'Gohir.A07G210200' => 'ghi', 'Gohir.A08G061100' => 'ghi', 'Gohir.A09G223000' => 'ghi', 'Gohir.A09G223100' => 'ghi', 'Gohir.A10G113900' => 'ghi', 'Gohir.A10G114000' => 'ghi', 'Gohir.D02G042300' => 'ghi', 'Gohir.D07G216100' => 'ghi', 'Gohir.D07G216200' => 'ghi', 'Gohir.D08G070400' => 'ghi', 'Gohir.D09G225000' => 'ghi', 'Gohir.D09G225100' => 'ghi', 'Gohir.D10G152300' => 'ghi', 'Gohir.D10G153200' => 'ghi', 'Gohir.D11G133701' => 'ghi', 'Gorai.004G074100' => 'gra', 'Gorai.005G046800' => 'gra', 'Gorai.006G246500' => 'gra', 'Gorai.006G246600' => 'gra', 'Gorai.007G142900' => 'gra', 'Gorai.011G171000' => 'gra', 'Gorai.011G171100' => 'gra', 'Gorai.013G104300' => 'gra', 'Gorai.013G104400' => 'gra', 'GSVIVG01000754001' => 'vvi', 'GSVIVG01000756001' => 'vvi', 'GSVIVG01010903001' => 'vvi', 'GSVIVG01017623001' => 'vvi', 'GSVIVG01018113001' => 'vvi', 'GSVIVG01018116001' => 'vvi', 'GSVIVG01018118001' => 'vvi', 'HanXRQChr03g0076211' => 'han', 'HanXRQChr03g0092431' => 'han', 'HanXRQChr03g0092441' => 'han', 'HanXRQChr03g0092591' => 'han', 'HanXRQChr03g0092671' => 'han', 'HanXRQChr03g0092681' => 'han', 'HanXRQChr03g0092691' => 'han', 'HanXRQChr03g0092701' => 'han', 'HanXRQChr03g0092721' => 'han', 'HanXRQChr03g0092731' => 'han', 'HanXRQChr04g0113681' => 'han', 'HanXRQChr10g0281371' => 'han', 'HanXRQChr11g0337141' => 'han', 'HanXRQChr13g0424521' => 'han', 'HanXRQChr13g0424531' => 'han', 'HanXRQChr13g0424541' => 'han', 'HanXRQChr16g0498221' => 'han', 'Haze_04377' => 'cav', 'Haze_11298' => 'cav', 'Haze_24547' => 'cav', 'Haze_24550' => 'cav', 'Haze_26587' => 'cav', 'Hma1.2p1_0650F.1_g195410' => 'hma', 'Hma1.2p1_0893F.1_g233470' => 'hma', 'HPP92_006508' => 'vpl', 'HPP92_024780' => 'vpl', 'Hund02688' => 'sun', 'Hund09380' => 'sun', 'Hund09381' => 'sun', 'Hund09832' => 'sun', 'Hund09833' => 'sun', 'Hund11351' => 'sun', 'Hund11513' => 'sun', 'Lalb_Chr06g0162591' => 'lal', 'Lalb_Chr06g0162601' => 'lal', 'Lalb_Chr06g0169321' => 'lal', 'Lalb_Chr09g0330951' => 'lal', 'Lalb_Chr16g0387631' => 'lal', 'Lalb_Chr21g0306241' => 'lal', 'Lalb_Chr25g0290051' => 'lal', 'Lalb_Chr25g0290061' => 'lal', 'Lalb_Chr25g0290071' => 'lal', 'Lj1g0003876' => 'lja', 'Lj1P1207T36' => 'lonja', 'Lj2C1156G12' => 'lonja', 'Lj3A793G39' => 'lonja', 'Lj3C580G2' => 'lonja', 'Lj3C780G2' => 'lonja', 'Lj3C780T4' => 'lonja', 'Lj3C793G9' => 'lonja', 'Lj4g0012960' => 'lja', 'Lj5g0021252' => 'lja', 'Lj5g0021484' => 'lja', 'Lj5g0024528' => 'lja', 'Lj6A399T12' => 'lonja', 'Lj6A656G65' => 'lonja', 'Lsat_1_v5_gn_3_125500' => 'lsa', 'Lsat_1_v5_gn_3_125540' => 'lsa', 'Lsat_1_v5_gn_5_72701' => 'lsa', 'Lsat_1_v5_gn_8_91560' => 'lsa', 'Lsat_1_v5_gn_9_9640' => 'lsa', 'Manes.01G200600' => 'mes', 'Manes.01G200700' => 'mes', 'Manes.03G168900' => 'mes', 'Manes.03G169000' => 'mes', 'Manes.05G085801' => 'mes', 'Manes.05G086200' => 'mes', 'Manes.15G036700' => 'mes', 'Manes.15G036900' => 'mes', 'Mapoly0004s0172' => 'mpo', 'Mapoly0023s0001' => 'mpo', 'Mapoly0142s0012' => 'mpo', 'MBI01_g32854_MAGBIO' => 'mbi', 'MBI11_g24427_MAGBIO' => 'mbi', 'MBI11_g47319_MAGBIO' => 'mbi', 'MCO01G433' => 'mco', 'MD00G1187800' => 'mdo', 'MD04G1226500' => 'mdo', 'MD05G1203900' => 'mdo', 'MD10G1191100' => 'mdo', 'MD12G1243500' => 'mdo', 'MD13G1207000' => 'mdo', 'MD13G1207100' => 'mdo', 'MD16G1208600' => 'mdo', 'Medtr1g050352' => 'mtr', 'Medtr1g070385' => 'mtr', 'Medtr1g070450' => 'mtr', 'Medtr1g075200' => 'mtr', 'Medtr1g075250' => 'mtr', 'Medtr1g075260' => 'mtr', 'Medtr1g475250' => 'mtr', 'Medtr4g075450' => 'mtr', 'Medtr7g096300' => 'mtr', 'Medtr8g105110' => 'mtr', 'MELO3C006470.2' => 'cme', 'MELO3C006471.2' => 'cme', 'MELO3C020772.2' => 'cme', 'MELO3C026780.2' => 'cme', 'MELO3C026781.2' => 'cme', 'Migut.D00390' => 'egut', 'Migut.G00435' => 'egut', 'Migut.G00436' => 'egut', 'Migut.G00718' => 'egut', 'MSTRG.21891' => 'ama', 'MSTRG.26910' => 'ama', 'MSTRG.4099' => 'ama', 'MSTRG.9925' => 'ama', 'Nitab4.5_0000165g0010' => 'nta', 'Nitab4.5_0000209g0180' => 'nta', 'Nitab4.5_0000244g0440' => 'nta', 'Nitab4.5_0000525g0220' => 'nta', 'Nitab4.5_0001597g0020' => 'nta', 'Nitab4.5_0001878g0040' => 'nta', 'Nitab4.5_0001878g0060' => 'nta', 'Nitab4.5_0002838g0100' => 'nta', 'Nitab4.5_0002838g0120' => 'nta', 'Nitab4.5_0004798g0030' => 'nta', 'Nitab4.5_0005420g0010' => 'nta', 'Nitab4.5_0005507g0010' => 'nta', 'Nitab4.5_0005574g0020' => 'nta', 'Nitab4.5_0005838g0010' => 'nta', 'Nitab4.5_0010580g0020' => 'nta', 'Nn1g02599' => 'nnu', 'Nn1g02608' => 'nnu', 'Nn3g17742' => 'nnu', 'Nn3g19534' => 'nnu', 'Nn3g19535' => 'nnu', 'Oeu008790.1' => 'oeu', 'Oeu008792.1' => 'oeu', 'Oeu032590.1' => 'oeu', 'Oeu035349.1' => 'oeu', 'Oeu049791.1' => 'oeu', 'Os01g0774500' => 'osa', 'Os03g0628800' => 'osa', 'Os03g0798600' => 'osa', 'Os05g0508800' => 'osa', 'Peaxi162Scf00036g02018' => 'pax', 'Peaxi162Scf00578g00032' => 'pax', 'Peaxi162Scf00578g00317' => 'pax', 'Peaxi162Scf00785g00114' => 'pax', 'Peaxi162Scf00813g00119' => 'pax', 'Peaxi162Scf00906g00227' => 'pax', 'PGR004G0875' => 'pgr', 'PGR004G2424' => 'pgr', 'PGR031G1239' => 'pgr', 'PGR031G2474' => 'pgr', 'PGR044G0423' => 'pgr', 'PGSC0003DMG400001128' => 'stu', 'PGSC0003DMG400007336' => 'stu', 'PGSC0003DMG400016318' => 'stu', 'PGSC0003DMG400016319' => 'stu', 'PGSC0003DMG400018074' => 'stu', 'Phvul.001G157700' => 'pvu', 'Phvul.002G148550' => 'pvu', 'Phvul.002G320200' => 'pvu', 'Phvul.003G089200' => 'pvu', 'Phvul.007G126000' => 'pvu', 'Phvul.007G126100' => 'pvu', 'Phvul.007G178000' => 'pvu', 'Phvul.007G178200' => 'pvu', 'Potri.002G043000' => 'ptr', 'Potri.002G043200' => 'ptr', 'Potri.003G123750' => 'ptr', 'Potri.005G055401' => 'ptr', 'Potri.005G219700' => 'ptr', 'Potri.005G220000' => 'ptr', 'Potri.008G161901' => 'ptr', 'Potri.008G162000' => 'ptr', 'Potri.008G162400' => 'ptr', 'Potri.010G076900' => 'ptr', 'Pp3c12_9180' => 'ppa', 'Pp3c13_19770' => 'ppa', 'Pp3c14_22950' => 'ppa', 'Pp3c16_12160' => 'ppa', 'Pp3c27_7820' => 'ppa', 'Pp3c2_3490' => 'ppa', 'Pp3c3_23700' => 'ppa', 'Pp3c3_36520' => 'ppa', 'Pp3c4_15250' => 'ppa', 'PRCOL_00007002' => 'pco', 'Prupe.1G030600' => 'ppe', 'Prupe.1G030700' => 'ppe', 'Prupe.6G345200' => 'ppe', 'Prupe.8G230300' => 'ppe', 'Prupe.8G230500' => 'ppe', 'Psat3g059600' => 'psa', 'Psat5g200920' => 'psa', 'Psat6g056440' => 'psa', 'Psat6g057360' => 'psa', 'Psat6g134120' => 'psa', 'Psat6g134160' => 'psa', 'Psat7g008640' => 'psa', 'Psat7g185240' => 'psa', 'PSO017G1330' => 'pso', 'PSO063G6097' => 'pso', 'PSO170G0835' => 'pso', 'PSO170G2499' => 'pso', 'PSO210G5058' => 'pso', 'PSO210G6154' => 'pso', 'PSO585G0031' => 'pso', 'PSO832G0264' => 'pso', 'PSO832G4288' => 'pso', 'QL03p027355' => 'qlo', 'QL03p027430' => 'qlo', 'QL04p081380' => 'qlo', 'QL06p015642' => 'qlo', 'QL06p015650' => 'qlo', 'QL06p015686' => 'qlo', 'QL12p042927' => 'qlo', 'QL93p1863_0035' => 'qlo', 'RcHm_v2.0_Chr3g0450581' => 'rch', 'RcHm_v2.0_Chr4g0390371' => 'rch', 'RcHm_v2.0_Chr4g0390381' => 'rch', 'RcHm_v2.0_Chr4g0390491' => 'rch', 'RcHm_v2.0_Chr4g0390501' => 'rch', 'RcHm_v2.0_Chr6g0289231' => 'rch', 'Rhsim04G0190400' => 'rsi', 'Rhsim04G0190500' => 'rsi', 'Rhsim04G0190600' => 'rsi', 'Rhsim13G0031400' => 'rsi', 'Rhsim13G0165600' => 'rsi', 'RhsimUnG0114600' => 'rsi', 'RhsimUnG0114700' => 'rsi', 'Sabra02G0034800' => 'sbr', 'Sabra02G0035100' => 'sbr', 'Sabra05G0168600' => 'sbr', 'Sabra05G0168800' => 'sbr', 'Sabra08G0123700' => 'sbr', 'Sabra10G0031900' => 'sbr', 'Sabra13G0039000' => 'sbr', 'SalBow2G0782' => 'sbo', 'SalBow2G1403' => 'sbo', 'SalBow4G0074' => 'sbo', 'SalBow4G2635' => 'sbo', 'SalBow5G3010' => 'sbo', 'Sc05g0000870' => 'sci', 'Sc05g0000890' => 'sci', 'Sc13g0005000' => 'sci', 'Sc13g0005030' => 'sci', 'Sc19g0003790' => 'sci', 'Sc19g0003800' => 'sci', 'Sed0003467' => 'sed', 'Sed0009355' => 'sed', 'Sed0009894' => 'sed', 'Sed0011972' => 'sed', 'Sed0021483' => 'sed', 'Sed0021750' => 'sed', 'Sed0026279' => 'sed', 'SEGI_05312' => 'sgi', 'SEGI_10112' => 'sgi', 'SEGI_15835' => 'sgi', 'SEGI_30386' => 'sgi', 'SEGI_34122' => 'sgi', 'SEGI_35063' => 'sgi', 'SGA_v2.0_scaffold101G29794' => 'sas', 'SGA_v2.0_scaffold1G00573' => 'sas', 'SGA_v2.0_scaffold79G25637' => 'sas', 'SGA_v2.0_scaffold88G27283' => 'sas', 'SGA_v2.0_scaffold88G27285' => 'sas', 'SGA_v2.0_scaffold88G27331' => 'sas', 'SHI09937' => 'shi', 'SMO119G0302' => 'smo', 'SMO137G0231' => 'smo', 'SMO367G1151' => 'smo', 'Solyc02g082000.3' => 'sly', 'Solyc06g031670.3' => 'sly', 'Solyc06g053810.3' => 'sly', 'Solyc07g025457.1' => 'sly', 'Solyc08g059740.1' => 'sly', 'Solyc08g059750.3' => 'sly', 'Solyc09g083370.3' => 'sly', 'Solyc12g038950.3' => 'sly', 'Sopen02g026630' => 'spe', 'Sopen06g018930' => 'spe', 'Sopen06g018940' => 'spe', 'Sopen08g009460' => 'spe', 'Sopen09g032290' => 'spe', 'Sp1g03080' => 'spa', 'Sp1g03090' => 'spa', 'Sp1g05480' => 'spa', 'Sp2g07860' => 'spa', 'Sp2g08430' => 'spa', 'Sp2g08440' => 'spa', 'Sp2g26200' => 'spa', 'Sp4g13170' => 'spa', 'Sp6g33840' => 'spa', 'SpUn1204_0010' => 'spa', 'TAR365G0908' => 'tar', 'TAR381G1270' => 'tar', 'TAR381G1651' => 'tar', 'TAR625G1131' => 'tar', 'TAR633G0962' => 'tar', 'TAR633G1729' => 'tar', 'TAR633G1864' => 'tar', 'TAR636G0221' => 'tar', 'TAR636G0314' => 'tar', 'TAR636G3202' => 'tar', 'THA.LOC104800805' => 'tha', 'THA.LOC104801096' => 'tha', 'THA.LOC104801555' => 'tha', 'THA.LOC104808491' => 'tha', 'THA.LOC104808595' => 'tha', 'THA.LOC104815985' => 'tha', 'THA.LOC104822250' => 'tha', 'THA.LOC104826071' => 'tha', 'Thecc.01G265200' => 'tca', 'Thecc.01G265300' => 'tca', 'Thecc.01G265700' => 'tca', 'Thecc.03G109100' => 'tca', 'Thecc.04G245900' => 'tca', 'Thecc.04G246000' => 'tca', 'Thhalv10003334m.g' => 'esa', 'Thhalv10005508m.g' => 'esa', 'Thhalv10005643m.g' => 'esa', 'Thhalv10007316m.g' => 'esa', 'Thhalv10009006m.g' => 'esa', 'Thhalv10009309m.g' => 'esa', 'Thhalv10014917m.g' => 'esa', 'Thhalv10014919m.g' => 'esa', 'Thhalv10015393m.g' => 'esa', 'Thhalv10016515m.g' => 'esa', 'Thhalv10029242m.g' => 'esa', 'TPR.G16654' => 'tpr', 'TPR.G20589' => 'tpr', 'TPR.G23029' => 'tpr', 'TPR.G27731' => 'tpr', 'TPR.G28889' => 'tpr', 'TPR.G28899' => 'tpr', 'TPR.G30846' => 'tpr', 'TPR.G5452' => 'tpr', 'TPR.G5713' => 'tpr', 'TPR.G9046' => 'tpr', 'TPR.G9061' => 'tpr', 'TWI09G1075' => 'twi', 'TWI12G0806' => 'twi', 'TWI18G0108' => 'twi', 'TWI53G1361' => 'twi', 'TWI73G0185' => 'twi', 'TWI73G0427' => 'twi', 'unitig_37.g12001' => 'ugi', 'unitig_747.g21660' => 'ugi', 'unitig_748.g7232' => 'ugi', 'unitig_748.g7315' => 'ugi', 'unitig_85.g27262' => 'ugi', 'unitig_92.g28220' => 'ugi', 'vmacro02632' => 'vma', 'vmacro08410' => 'vma', 'vmacro08411' => 'vma', 'vmacro15407' => 'vma', 'VMungo0251G3619' => 'vmu', 'VMungo0720G1204' => 'vmu', 'VMungo0720G1918' => 'vmu', 'VMungo0720G2387' => 'vmu', 'VMungo0720G2961' => 'vmu', 'VMungo1215G2154' => 'vmu', 'VMungo1383G2411' => 'vmu', 'Zm00001eb051130' => 'zma', 'Zm00001eb116830' => 'zma', 'Zm00001eb116850' => 'zma', 'Zm00001eb151740' => 'zma', 'Zm00001eb292360' => 'zma', 'Zm00001eb301640' => 'zma' ), 'gf_id' => 'HOM05D000856', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000856' ), 'data_identifier' => 'HOM05D000856', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000856', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p00010' => 'bna', 'A03p04160' => 'bna', 'A03p17160' => 'bna', 'A04p23370' => 'bna', 'A05p14860' => 'bna', 'A08p37020' => 'bna', 'A09p08050' => 'bna', 'A09p66800' => 'bna', 'A09p67940' => 'bna', 'A10p02680' => 'bna', 'A10p05320' => 'bna', 'Aa31LG1G20560' => 'aar', 'Aa31LG1G20610' => 'aar', 'Aa31LG1G7810' => 'aar', 'Aa31LG5G3590' => 'aar', 'Aa31LG5G6140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3819' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4683' => 'aag', 'Actinidia04480' => 'ach', 'Actinidia05466' => 'ach', 'Actinidia08445' => 'ach', 'Actinidia21170' => 'ach', 'Actinidia24812' => 'ach', 'Actinidia24951' => 'ach', 'Actinidia40088' => 'ach', 'Ah.02g111660' => 'amhyb', 'Ah.11g048900' => 'amhyb', 'Ah.11g049910' => 'amhyb', 'AL1G13870' => 'aly', 'AL1G13880' => 'aly', 'AL1G16760' => 'aly', 'AL390U10020' => 'aly', 'AL4G25520' => 'aly', 'AL6G19890' => 'aly', 'AL6G19900' => 'aly', 'AL6G19910' => 'aly', 'AL8G40100' => 'aly', 'Aqoxy2G03562' => 'aox', 'Aqoxy5G00316' => 'aox', 'Aqoxy5G00926' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1628KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1H403S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2FU6SJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.882I6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8YRY2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YN1SN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AF70II' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZA8L1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F916KL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHRD8H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KTZ8QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S22EMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8M29T' => 'arhy', 'AT1G04270' => 'ath', 'AT1G04280' => 'ath', 'AT1G06750' => 'ath', 'AT1G33850' => 'ath', 'AT2G30630' => 'ath', 'AT5G09490' => 'ath', 'AT5G09500' => 'ath', 'AT5G09510' => 'ath', 'AT5G43640' => 'ath', 'AT5G63070' => 'ath', 'ATR0605G315' => 'atr', 'Atru.chr11.175' => 'acertr', 'Atru.chr11.653' => 'acertr', 'Atru.chr3.1616' => 'acertr', 'Atru.chr4.2230' => 'acertr', 'Atru.chr4.2232' => 'acertr', 'Atru.chr5.1598' => 'acertr', 'Atru.chr5.1600' => 'acertr', 'Atru.chr5.2188' => 'acertr', 'AUR62008326' => 'cqu', 'AUR62011922' => 'cqu', 'AUR62011924' => 'cqu', 'AUR62021771' => 'cqu', 'AUR62032237' => 'cqu', 'AUR62032240' => 'cqu', 'BcaB01g05572' => 'bca', 'BcaB02g10337' => 'bca', 'BcaB04g19944' => 'bca', 'BcaB05g21548' => 'bca', 'BcaB05g21549' => 'bca', 'BcaB05g23227' => 'bca', 'BcaB06g26256' => 'bca', 'BcaB06g26257' => 'bca', 'BcaB06g28379' => 'bca', 'BcaC02g11159' => 'bca', 'BcaC03g13258' => 'bca', 'BcaC03g13259' => 'bca', 'BcaC05g24456' => 'bca', 'BcaC05g24457' => 'bca', 'BcaC07g36922' => 'bca', 'BcaC07g36923' => 'bca', 'BcaC07g42050' => 'bca', 'BcaC07g42176' => 'bca', 'BcaC07g42195' => 'bca', 'BcaC07g42196' => 'bca', 'BcaNung06674' => 'bca', 'BolC2t06351H' => 'bol', 'BolC2t06352H' => 'bol', 'BolC3t12993H' => 'bol', 'BolC4t23525H' => 'bol', 'BolC4t27475H' => 'bol', 'BolC5t29025H' => 'bol', 'BolC5t29026H' => 'bol', 'BolC8t46898H' => 'bol', 'BolC8t46899H' => 'bol', 'BolC8t52630H' => 'bol', 'BolC8t52765H' => 'bol', 'BolC9t53824H' => 'bol', 'BraA03t09760Z' => 'bra', 'BraA03t10990Z' => 'bra', 'BraA05t20413Z' => 'bra', 'BraA08t35602Z' => 'bra', 'BraA09t36458Z' => 'bra', 'BraA09t42018Z' => 'bra', 'BraA09t42129Z' => 'bra', 'BraA10t42536Z' => 'bra', 'BraA10t42537Z' => 'bra', 'C01p10690' => 'bna', 'C02p03890' => 'bna', 'C02p03900' => 'bna', 'C03p04620' => 'bna', 'C04p19870' => 'bna', 'C04p59670' => 'bna', 'C05p02460' => 'bna', 'C05p02470' => 'bna', 'C08p00980' => 'bna', 'C08p00990' => 'bna', 'C08p51030' => 'bna', 'C08p52360' => 'bna', 'C09p09120' => 'bna', 'CAN.G19.15' => 'can', 'CAN.G251.10' => 'can', 'CAN.G251.9' => 'can', 'CAN.G398.24' => 'can', 'CAN.G410.32' => 'can', 'CAN.G881.2' => 'can', 'CANSAT01G3025' => 'cansat', 'CANSAT78G1211' => 'cansat', 'CANSAT78G1218' => 'cansat', 'CANSAT78G1521' => 'cansat', 'CANSAT78G1670' => 'cansat', 'CARHR003600' => 'chi', 'CARHR003610' => 'chi', 'CARHR006290' => 'chi', 'CARHR006430' => 'chi', 'CARHR124110' => 'chi', 'CARHR203870' => 'chi', 'CARHR203880' => 'chi', 'CARHR203890' => 'chi', 'CARHR276880' => 'chi', 'Carub.0001s0346' => 'cru', 'Carub.0001s0347' => 'cru', 'Carub.0001s0607' => 'cru', 'Carub.0003s2768' => 'cru', 'Carub.0003s2769' => 'cru', 'Carub.0004s1178' => 'cru', 'Carub.0006s0806' => 'cru', 'Carub.0006s0807' => 'cru', 'Carub.0006s0808' => 'cru', 'Carub.0008s0501' => 'cru', 'Carub.0008s2379' => 'cru', 'Ca_08655_v3' => 'car', 'Ca_08922_v3' => 'car', 'Ca_08923_v3' => 'car', 'Ca_09119_v3' => 'car', 'Ca_09703_v3' => 'car', 'Ca_09705_v3' => 'car', 'Ca_09835_v3' => 'car', 'Ca_26403_v3' => 'car', 'Ca_30719_v3' => 'car', 'CBR_g17958' => 'cbr', 'CBR_g40516' => 'cbr', 'Cc00_g05350' => 'ccan', 'Cc01_g18690' => 'ccan', 'Cc03_g04830' => 'ccan', 'Cc03_g04850' => 'ccan', 'CDE02G4469' => 'cde', 'CDE06G0883' => 'cde', 'CDE06G1295' => 'cde', 'CDE06G1390' => 'cde', 'CDE07G0584' => 'cde', 'CDE07G1084' => 'cde', 'CDE08G1259' => 'cde', 'Cfa002341' => 'cfa', 'Cfa024337' => 'cfa', 'Ciclev10004749m.g' => 'ccl', 'Ciclev10006127m.g' => 'ccl', 'Ciclev10019720m.g' => 'ccl', 'Ciclev10022652m.g' => 'ccl', 'CiPaw.01G190400' => 'cil', 'CiPaw.01G190500' => 'cil', 'CiPaw.02G116400' => 'cil', 'CiPaw.02G116500' => 'cil', 'CiPaw.04G183000' => 'cil', 'CiPaw.04G183300' => 'cil', 'ClCG05G004610' => 'cla', 'ClCG05G004620' => 'cla', 'ClCG06G006730' => 'cla', 'ClCG06G006740' => 'cla', 'ClCG11G003690' => 'cla', 'COL.COLO4_08276' => 'col', 'COL.COLO4_08277' => 'col', 'COL.COLO4_15787' => 'col', 'COL.COLO4_15789' => 'col', 'Cpa.g.c44815' => 'cpa', 'Cpa.g.sc52.144' => 'cpa', 'Cpa.g.sc58.46' => 'cpa', 'Cpa.g.sc58.47' => 'cpa', 'Cre08.g360900' => 'cre', 'CsaV3_2G013030' => 'csa', 'CsaV3_2G013050' => 'csa', 'CsaV3_2G015620' => 'csa', 'CsaV3_3G012590' => 'csa', 'CsaV3_3G012600' => 'csa', 'CSS0001641' => 'camsi', 'CSS0008310' => 'camsi', 'CSS0013011' => 'camsi', 'CSS0017147' => 'camsi', 'CSS0022970' => 'camsi', 'CSS0025655' => 'camsi', 'CSS0028665' => 'camsi', 'CSS0029117' => 'camsi', 'CSS0032024' => 'camsi', 'CSS0039681' => 'camsi', 'CSS0046516' => 'camsi', 'CSS0050307' => 'camsi', 'DCAR_005871' => 'dca', 'DCAR_007342' => 'dca', 'DCAR_024228' => 'dca', 'DCAR_027277' => 'dca', 'DCAR_030718' => 'dca', 'Dinv20287' => 'din', 'Dinv22461' => 'din', 'Dinv22464' => 'din', 'Dinv29912' => 'din', 'Dinv29913' => 'din', 'Dinv34580' => 'din', 'Dinv34582' => 'din', 'Dinv44632' => 'din', 'Duzib052G0266' => 'dzi', 'Duzib133G0907' => 'dzi', 'Duzib133G1034' => 'dzi', 'Duzib138G0207' => 'dzi', 'Duzib138G0491' => 'dzi', 'Duzib151G0812' => 'dzi', 'Duzib151G1166' => 'dzi', 'Duzib168G0192' => 'dzi', 'Duzib211G0077' => 'dzi', 'Duzib212G0429' => 'dzi', 'Duzib212G0472' => 'dzi', 'ECA233G2617' => 'eca', 'ECA236G4188' => 'eca', 'ECA240G0936' => 'eca', 'ECA240G1129' => 'eca', 'ECA247G0623' => 'eca', 'EL10Ac5g10451' => 'bvu', 'EL10Ac5g10453' => 'bvu', 'EL10Ac5g10894' => 'bvu', 'Eucgr.H00192' => 'egr', 'Eucgr.H00193' => 'egr', 'Eucgr.H00194' => 'egr', 'Eucgr.J01562' => 'egr', 'Eucgr.K03301' => 'egr', 'FAN02G0632' => 'fan', 'FAN05G5378' => 'fan', 'FAN09G3247' => 'fan', 'FAN12G0435' => 'fan', 'FAN12G2426' => 'fan', 'FAN14G1707' => 'fan', 'FAN14G4725' => 'fan', 'FAN15G2071' => 'fan', 'FAN17G3065' => 'fan', 'FAN19G1376' => 'fan', 'FAN20G0354' => 'fan', 'FAN20G2429' => 'fan', 'FAN20G2658' => 'fan', 'FAN24G2343' => 'fan', 'FAN27G2362' => 'fan', 'FAN28G1765' => 'fan', 'FvH4_1g16020' => 'fve', 'FvH4_2g04890' => 'fve', 'FvH4_2g22270' => 'fve', 'FvH4_4g02630' => 'fve', 'FvH4_4g02640' => 'fve', 'FvH4_6g02650' => 'fve', 'Glyma.02G140600' => 'gma', 'Glyma.03G159900' => 'gma', 'Glyma.05G234800' => 'gma', 'Glyma.07G269600' => 'gma', 'Glyma.08G042300' => 'gma', 'Glyma.10G033500' => 'gma', 'Glyma.10G185200' => 'gma', 'Glyma.17G004300' => 'gma', 'Glyma.19G161900' => 'gma', 'Glyma.20G205100' => 'gma', 'Glyma.20G205200' => 'gma', 'Gohir.A01G139101' => 'ghi', 'Gohir.A02G035600' => 'ghi', 'Gohir.A02G117901' => 'ghi', 'Gohir.A07G210100' => 'ghi', 'Gohir.A07G210200' => 'ghi', 'Gohir.A08G061100' => 'ghi', 'Gohir.A09G223000' => 'ghi', 'Gohir.A09G223100' => 'ghi', 'Gohir.A10G113900' => 'ghi', 'Gohir.A10G114000' => 'ghi', 'Gohir.D02G042300' => 'ghi', 'Gohir.D07G216100' => 'ghi', 'Gohir.D07G216200' => 'ghi', 'Gohir.D08G070400' => 'ghi', 'Gohir.D09G225000' => 'ghi', 'Gohir.D09G225100' => 'ghi', 'Gohir.D10G152300' => 'ghi', 'Gohir.D10G153200' => 'ghi', 'Gohir.D11G133701' => 'ghi', 'Gorai.004G074100' => 'gra', 'Gorai.005G046800' => 'gra', 'Gorai.006G246500' => 'gra', 'Gorai.006G246600' => 'gra', 'Gorai.007G142900' => 'gra', 'Gorai.011G171000' => 'gra', 'Gorai.011G171100' => 'gra', 'Gorai.013G104300' => 'gra', 'Gorai.013G104400' => 'gra', 'GSVIVG01000754001' => 'vvi', 'GSVIVG01000756001' => 'vvi', 'GSVIVG01010903001' => 'vvi', 'GSVIVG01017623001' => 'vvi', 'GSVIVG01018113001' => 'vvi', 'GSVIVG01018116001' => 'vvi', 'GSVIVG01018118001' => 'vvi', 'HanXRQChr03g0076211' => 'han', 'HanXRQChr03g0092431' => 'han', 'HanXRQChr03g0092441' => 'han', 'HanXRQChr03g0092591' => 'han', 'HanXRQChr03g0092671' => 'han', 'HanXRQChr03g0092681' => 'han', 'HanXRQChr03g0092691' => 'han', 'HanXRQChr03g0092701' => 'han', 'HanXRQChr03g0092721' => 'han', 'HanXRQChr03g0092731' => 'han', 'HanXRQChr04g0113681' => 'han', 'HanXRQChr10g0281371' => 'han', 'HanXRQChr11g0337141' => 'han', 'HanXRQChr13g0424521' => 'han', 'HanXRQChr13g0424531' => 'han', 'HanXRQChr13g0424541' => 'han', 'HanXRQChr16g0498221' => 'han', 'Haze_04377' => 'cav', 'Haze_11298' => 'cav', 'Haze_24547' => 'cav', 'Haze_24550' => 'cav', 'Haze_26587' => 'cav', 'Hma1.2p1_0650F.1_g195410' => 'hma', 'Hma1.2p1_0893F.1_g233470' => 'hma', 'HPP92_006508' => 'vpl', 'HPP92_024780' => 'vpl', 'Hund02688' => 'sun', 'Hund09380' => 'sun', 'Hund09381' => 'sun', 'Hund09832' => 'sun', 'Hund09833' => 'sun', 'Hund11351' => 'sun', 'Hund11513' => 'sun', 'Lalb_Chr06g0162591' => 'lal', 'Lalb_Chr06g0162601' => 'lal', 'Lalb_Chr06g0169321' => 'lal', 'Lalb_Chr09g0330951' => 'lal', 'Lalb_Chr16g0387631' => 'lal', 'Lalb_Chr21g0306241' => 'lal', 'Lalb_Chr25g0290051' => 'lal', 'Lalb_Chr25g0290061' => 'lal', 'Lalb_Chr25g0290071' => 'lal', 'Lj1g0003876' => 'lja', 'Lj1P1207T36' => 'lonja', 'Lj2C1156G12' => 'lonja', 'Lj3A793G39' => 'lonja', 'Lj3C580G2' => 'lonja', 'Lj3C780G2' => 'lonja', 'Lj3C780T4' => 'lonja', 'Lj3C793G9' => 'lonja', 'Lj4g0012960' => 'lja', 'Lj5g0021252' => 'lja', 'Lj5g0021484' => 'lja', 'Lj5g0024528' => 'lja', 'Lj6A399T12' => 'lonja', 'Lj6A656G65' => 'lonja', 'Lsat_1_v5_gn_3_125500' => 'lsa', 'Lsat_1_v5_gn_3_125540' => 'lsa', 'Lsat_1_v5_gn_5_72701' => 'lsa', 'Lsat_1_v5_gn_8_91560' => 'lsa', 'Lsat_1_v5_gn_9_9640' => 'lsa', 'Manes.01G200600' => 'mes', 'Manes.01G200700' => 'mes', 'Manes.03G168900' => 'mes', 'Manes.03G169000' => 'mes', 'Manes.05G085801' => 'mes', 'Manes.05G086200' => 'mes', 'Manes.15G036700' => 'mes', 'Manes.15G036900' => 'mes', 'Mapoly0004s0172' => 'mpo', 'Mapoly0023s0001' => 'mpo', 'Mapoly0142s0012' => 'mpo', 'MBI01_g32854_MAGBIO' => 'mbi', 'MBI11_g24427_MAGBIO' => 'mbi', 'MBI11_g47319_MAGBIO' => 'mbi', 'MCO01G433' => 'mco', 'MD00G1187800' => 'mdo', 'MD04G1226500' => 'mdo', 'MD05G1203900' => 'mdo', 'MD10G1191100' => 'mdo', 'MD12G1243500' => 'mdo', 'MD13G1207000' => 'mdo', 'MD13G1207100' => 'mdo', 'MD16G1208600' => 'mdo', 'Medtr1g050352' => 'mtr', 'Medtr1g070385' => 'mtr', 'Medtr1g070450' => 'mtr', 'Medtr1g075200' => 'mtr', 'Medtr1g075250' => 'mtr', 'Medtr1g075260' => 'mtr', 'Medtr1g475250' => 'mtr', 'Medtr4g075450' => 'mtr', 'Medtr7g096300' => 'mtr', 'Medtr8g105110' => 'mtr', 'MELO3C006470.2' => 'cme', 'MELO3C006471.2' => 'cme', 'MELO3C020772.2' => 'cme', 'MELO3C026780.2' => 'cme', 'MELO3C026781.2' => 'cme', 'Migut.D00390' => 'egut', 'Migut.G00435' => 'egut', 'Migut.G00436' => 'egut', 'Migut.G00718' => 'egut', 'MSTRG.21891' => 'ama', 'MSTRG.26910' => 'ama', 'MSTRG.4099' => 'ama', 'MSTRG.9925' => 'ama', 'Nitab4.5_0000165g0010' => 'nta', 'Nitab4.5_0000209g0180' => 'nta', 'Nitab4.5_0000244g0440' => 'nta', 'Nitab4.5_0000525g0220' => 'nta', 'Nitab4.5_0001597g0020' => 'nta', 'Nitab4.5_0001878g0040' => 'nta', 'Nitab4.5_0001878g0060' => 'nta', 'Nitab4.5_0002838g0100' => 'nta', 'Nitab4.5_0002838g0120' => 'nta', 'Nitab4.5_0004798g0030' => 'nta', 'Nitab4.5_0005420g0010' => 'nta', 'Nitab4.5_0005507g0010' => 'nta', 'Nitab4.5_0005574g0020' => 'nta', 'Nitab4.5_0005838g0010' => 'nta', 'Nitab4.5_0010580g0020' => 'nta', 'Nn1g02599' => 'nnu', 'Nn1g02608' => 'nnu', 'Nn3g17742' => 'nnu', 'Nn3g19534' => 'nnu', 'Nn3g19535' => 'nnu', 'Oeu008790.1' => 'oeu', 'Oeu008792.1' => 'oeu', 'Oeu032590.1' => 'oeu', 'Oeu035349.1' => 'oeu', 'Oeu049791.1' => 'oeu', 'Os01g0774500' => 'osa', 'Os03g0628800' => 'osa', 'Os03g0798600' => 'osa', 'Os05g0508800' => 'osa', 'Peaxi162Scf00036g02018' => 'pax', 'Peaxi162Scf00578g00032' => 'pax', 'Peaxi162Scf00578g00317' => 'pax', 'Peaxi162Scf00785g00114' => 'pax', 'Peaxi162Scf00813g00119' => 'pax', 'Peaxi162Scf00906g00227' => 'pax', 'PGR004G0875' => 'pgr', 'PGR004G2424' => 'pgr', 'PGR031G1239' => 'pgr', 'PGR031G2474' => 'pgr', 'PGR044G0423' => 'pgr', 'PGSC0003DMG400001128' => 'stu', 'PGSC0003DMG400007336' => 'stu', 'PGSC0003DMG400016318' => 'stu', 'PGSC0003DMG400016319' => 'stu', 'PGSC0003DMG400018074' => 'stu', 'Phvul.001G157700' => 'pvu', 'Phvul.002G148550' => 'pvu', 'Phvul.002G320200' => 'pvu', 'Phvul.003G089200' => 'pvu', 'Phvul.007G126000' => 'pvu', 'Phvul.007G126100' => 'pvu', 'Phvul.007G178000' => 'pvu', 'Phvul.007G178200' => 'pvu', 'Potri.002G043000' => 'ptr', 'Potri.002G043200' => 'ptr', 'Potri.003G123750' => 'ptr', 'Potri.005G055401' => 'ptr', 'Potri.005G219700' => 'ptr', 'Potri.005G220000' => 'ptr', 'Potri.008G161901' => 'ptr', 'Potri.008G162000' => 'ptr', 'Potri.008G162400' => 'ptr', 'Potri.010G076900' => 'ptr', 'Pp3c12_9180' => 'ppa', 'Pp3c13_19770' => 'ppa', 'Pp3c14_22950' => 'ppa', 'Pp3c16_12160' => 'ppa', 'Pp3c27_7820' => 'ppa', 'Pp3c2_3490' => 'ppa', 'Pp3c3_23700' => 'ppa', 'Pp3c3_36520' => 'ppa', 'Pp3c4_15250' => 'ppa', 'PRCOL_00007002' => 'pco', 'Prupe.1G030600' => 'ppe', 'Prupe.1G030700' => 'ppe', 'Prupe.6G345200' => 'ppe', 'Prupe.8G230300' => 'ppe', 'Prupe.8G230500' => 'ppe', 'Psat3g059600' => 'psa', 'Psat5g200920' => 'psa', 'Psat6g056440' => 'psa', 'Psat6g057360' => 'psa', 'Psat6g134120' => 'psa', 'Psat6g134160' => 'psa', 'Psat7g008640' => 'psa', 'Psat7g185240' => 'psa', 'PSO017G1330' => 'pso', 'PSO063G6097' => 'pso', 'PSO170G0835' => 'pso', 'PSO170G2499' => 'pso', 'PSO210G5058' => 'pso', 'PSO210G6154' => 'pso', 'PSO585G0031' => 'pso', 'PSO832G0264' => 'pso', 'PSO832G4288' => 'pso', 'QL03p027355' => 'qlo', 'QL03p027430' => 'qlo', 'QL04p081380' => 'qlo', 'QL06p015642' => 'qlo', 'QL06p015650' => 'qlo', 'QL06p015686' => 'qlo', 'QL12p042927' => 'qlo', 'QL93p1863_0035' => 'qlo', 'RcHm_v2.0_Chr3g0450581' => 'rch', 'RcHm_v2.0_Chr4g0390371' => 'rch', 'RcHm_v2.0_Chr4g0390381' => 'rch', 'RcHm_v2.0_Chr4g0390491' => 'rch', 'RcHm_v2.0_Chr4g0390501' => 'rch', 'RcHm_v2.0_Chr6g0289231' => 'rch', 'Rhsim04G0190400' => 'rsi', 'Rhsim04G0190500' => 'rsi', 'Rhsim04G0190600' => 'rsi', 'Rhsim13G0031400' => 'rsi', 'Rhsim13G0165600' => 'rsi', 'RhsimUnG0114600' => 'rsi', 'RhsimUnG0114700' => 'rsi', 'Sabra02G0034800' => 'sbr', 'Sabra02G0035100' => 'sbr', 'Sabra05G0168600' => 'sbr', 'Sabra05G0168800' => 'sbr', 'Sabra08G0123700' => 'sbr', 'Sabra10G0031900' => 'sbr', 'Sabra13G0039000' => 'sbr', 'SalBow2G0782' => 'sbo', 'SalBow2G1403' => 'sbo', 'SalBow4G0074' => 'sbo', 'SalBow4G2635' => 'sbo', 'SalBow5G3010' => 'sbo', 'Sc05g0000870' => 'sci', 'Sc05g0000890' => 'sci', 'Sc13g0005000' => 'sci', 'Sc13g0005030' => 'sci', 'Sc19g0003790' => 'sci', 'Sc19g0003800' => 'sci', 'Sed0003467' => 'sed', 'Sed0009355' => 'sed', 'Sed0009894' => 'sed', 'Sed0011972' => 'sed', 'Sed0021483' => 'sed', 'Sed0021750' => 'sed', 'Sed0026279' => 'sed', 'SEGI_05312' => 'sgi', 'SEGI_10112' => 'sgi', 'SEGI_15835' => 'sgi', 'SEGI_30386' => 'sgi', 'SEGI_34122' => 'sgi', 'SEGI_35063' => 'sgi', 'SGA_v2.0_scaffold101G29794' => 'sas', 'SGA_v2.0_scaffold1G00573' => 'sas', 'SGA_v2.0_scaffold79G25637' => 'sas', 'SGA_v2.0_scaffold88G27283' => 'sas', 'SGA_v2.0_scaffold88G27285' => 'sas', 'SGA_v2.0_scaffold88G27331' => 'sas', 'SHI09937' => 'shi', 'SMO119G0302' => 'smo', 'SMO137G0231' => 'smo', 'SMO367G1151' => 'smo', 'Solyc02g082000.3' => 'sly', 'Solyc06g031670.3' => 'sly', 'Solyc06g053810.3' => 'sly', 'Solyc07g025457.1' => 'sly', 'Solyc08g059740.1' => 'sly', 'Solyc08g059750.3' => 'sly', 'Solyc09g083370.3' => 'sly', 'Solyc12g038950.3' => 'sly', 'Sopen02g026630' => 'spe', 'Sopen06g018930' => 'spe', 'Sopen06g018940' => 'spe', 'Sopen08g009460' => 'spe', 'Sopen09g032290' => 'spe', 'Sp1g03080' => 'spa', 'Sp1g03090' => 'spa', 'Sp1g05480' => 'spa', 'Sp2g07860' => 'spa', 'Sp2g08430' => 'spa', 'Sp2g08440' => 'spa', 'Sp2g26200' => 'spa', 'Sp4g13170' => 'spa', 'Sp6g33840' => 'spa', 'SpUn1204_0010' => 'spa', 'TAR365G0908' => 'tar', 'TAR381G1270' => 'tar', 'TAR381G1651' => 'tar', 'TAR625G1131' => 'tar', 'TAR633G0962' => 'tar', 'TAR633G1729' => 'tar', 'TAR633G1864' => 'tar', 'TAR636G0221' => 'tar', 'TAR636G0314' => 'tar', 'TAR636G3202' => 'tar', 'THA.LOC104800805' => 'tha', 'THA.LOC104801096' => 'tha', 'THA.LOC104801555' => 'tha', 'THA.LOC104808491' => 'tha', 'THA.LOC104808595' => 'tha', 'THA.LOC104815985' => 'tha', 'THA.LOC104822250' => 'tha', 'THA.LOC104826071' => 'tha', 'Thecc.01G265200' => 'tca', 'Thecc.01G265300' => 'tca', 'Thecc.01G265700' => 'tca', 'Thecc.03G109100' => 'tca', 'Thecc.04G245900' => 'tca', 'Thecc.04G246000' => 'tca', 'Thhalv10003334m.g' => 'esa', 'Thhalv10005508m.g' => 'esa', 'Thhalv10005643m.g' => 'esa', 'Thhalv10007316m.g' => 'esa', 'Thhalv10009006m.g' => 'esa', 'Thhalv10009309m.g' => 'esa', 'Thhalv10014917m.g' => 'esa', 'Thhalv10014919m.g' => 'esa', 'Thhalv10015393m.g' => 'esa', 'Thhalv10016515m.g' => 'esa', 'Thhalv10029242m.g' => 'esa', 'TPR.G16654' => 'tpr', 'TPR.G20589' => 'tpr', 'TPR.G23029' => 'tpr', 'TPR.G27731' => 'tpr', 'TPR.G28889' => 'tpr', 'TPR.G28899' => 'tpr', 'TPR.G30846' => 'tpr', 'TPR.G5452' => 'tpr', 'TPR.G5713' => 'tpr', 'TPR.G9046' => 'tpr', 'TPR.G9061' => 'tpr', 'TWI09G1075' => 'twi', 'TWI12G0806' => 'twi', 'TWI18G0108' => 'twi', 'TWI53G1361' => 'twi', 'TWI73G0185' => 'twi', 'TWI73G0427' => 'twi', 'unitig_37.g12001' => 'ugi', 'unitig_747.g21660' => 'ugi', 'unitig_748.g7232' => 'ugi', 'unitig_748.g7315' => 'ugi', 'unitig_85.g27262' => 'ugi', 'unitig_92.g28220' => 'ugi', 'vmacro02632' => 'vma', 'vmacro08410' => 'vma', 'vmacro08411' => 'vma', 'vmacro15407' => 'vma', 'VMungo0251G3619' => 'vmu', 'VMungo0720G1204' => 'vmu', 'VMungo0720G1918' => 'vmu', 'VMungo0720G2387' => 'vmu', 'VMungo0720G2961' => 'vmu', 'VMungo1215G2154' => 'vmu', 'VMungo1383G2411' => 'vmu', 'Zm00001eb051130' => 'zma', 'Zm00001eb116830' => 'zma', 'Zm00001eb116850' => 'zma', 'Zm00001eb151740' => 'zma', 'Zm00001eb292360' => 'zma', 'Zm00001eb301640' => 'zma' ) $gf_id = 'HOM05D000856' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000856' ) $data_identifier = 'HOM05D000856' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 13, 'ath' => (int) 10, 'atr' => (int) 1, 'acertr' => (int) 8, 'cqu' => (int) 6, 'bca' => (int) 21, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 11, 'car' => (int) 9, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 8, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 5, 'fan' => (int) 16, 'fve' => (int) 6, 'gma' => (int) 11, 'ghi' => (int) 19, 'gra' => (int) 9, 'vvi' => (int) 7, 'han' => (int) 17, 'cav' => (int) 5, 'hma' => (int) 2, 'vpl' => (int) 2, 'sun' => (int) 7, 'lal' => (int) 9, 'lja' => (int) 5, 'lonja' => (int) 9, 'lsa' => (int) 5, 'mes' => (int) 8, 'mpo' => (int) 3, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 10, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 15, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 9, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 9, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 6, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 5, 'spa' => (int) 10, 'tar' => (int) 10, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 11, 'tpr' => (int) 11, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 4, 'vmu' => (int) 7, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb301640' $species_info = array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ) $local_species = 'sbo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000856', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p00010' => 'bna', 'A03p04160' => 'bna', 'A03p17160' => 'bna', 'A04p23370' => 'bna', 'A05p14860' => 'bna', 'A08p37020' => 'bna', 'A09p08050' => 'bna', 'A09p66800' => 'bna', 'A09p67940' => 'bna', 'A10p02680' => 'bna', 'A10p05320' => 'bna', 'Aa31LG1G20560' => 'aar', 'Aa31LG1G20610' => 'aar', 'Aa31LG1G7810' => 'aar', 'Aa31LG5G3590' => 'aar', 'Aa31LG5G6140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3819' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4683' => 'aag', 'Actinidia04480' => 'ach', 'Actinidia05466' => 'ach', 'Actinidia08445' => 'ach', 'Actinidia21170' => 'ach', 'Actinidia24812' => 'ach', 'Actinidia24951' => 'ach', 'Actinidia40088' => 'ach', 'Ah.02g111660' => 'amhyb', 'Ah.11g048900' => 'amhyb', 'Ah.11g049910' => 'amhyb', 'AL1G13870' => 'aly', 'AL1G13880' => 'aly', 'AL1G16760' => 'aly', 'AL390U10020' => 'aly', 'AL4G25520' => 'aly', 'AL6G19890' => 'aly', 'AL6G19900' => 'aly', 'AL6G19910' => 'aly', 'AL8G40100' => 'aly', 'Aqoxy2G03562' => 'aox', 'Aqoxy5G00316' => 'aox', 'Aqoxy5G00926' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1628KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1H403S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2FU6SJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.882I6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8YRY2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YN1SN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AF70II' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZA8L1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F916KL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHRD8H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KTZ8QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S22EMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8M29T' => 'arhy', 'AT1G04270' => 'ath', 'AT1G04280' => 'ath', 'AT1G06750' => 'ath', 'AT1G33850' => 'ath', 'AT2G30630' => 'ath', 'AT5G09490' => 'ath', 'AT5G09500' => 'ath', 'AT5G09510' => 'ath', 'AT5G43640' => 'ath', 'AT5G63070' => 'ath', 'ATR0605G315' => 'atr', 'Atru.chr11.175' => 'acertr', 'Atru.chr11.653' => 'acertr', 'Atru.chr3.1616' => 'acertr', 'Atru.chr4.2230' => 'acertr', 'Atru.chr4.2232' => 'acertr', 'Atru.chr5.1598' => 'acertr', 'Atru.chr5.1600' => 'acertr', 'Atru.chr5.2188' => 'acertr', 'AUR62008326' => 'cqu', 'AUR62011922' => 'cqu', 'AUR62011924' => 'cqu', 'AUR62021771' => 'cqu', 'AUR62032237' => 'cqu', 'AUR62032240' => 'cqu', 'BcaB01g05572' => 'bca', 'BcaB02g10337' => 'bca', 'BcaB04g19944' => 'bca', 'BcaB05g21548' => 'bca', 'BcaB05g21549' => 'bca', 'BcaB05g23227' => 'bca', 'BcaB06g26256' => 'bca', 'BcaB06g26257' => 'bca', 'BcaB06g28379' => 'bca', 'BcaC02g11159' => 'bca', 'BcaC03g13258' => 'bca', 'BcaC03g13259' => 'bca', 'BcaC05g24456' => 'bca', 'BcaC05g24457' => 'bca', 'BcaC07g36922' => 'bca', 'BcaC07g36923' => 'bca', 'BcaC07g42050' => 'bca', 'BcaC07g42176' => 'bca', 'BcaC07g42195' => 'bca', 'BcaC07g42196' => 'bca', 'BcaNung06674' => 'bca', 'BolC2t06351H' => 'bol', 'BolC2t06352H' => 'bol', 'BolC3t12993H' => 'bol', 'BolC4t23525H' => 'bol', 'BolC4t27475H' => 'bol', 'BolC5t29025H' => 'bol', 'BolC5t29026H' => 'bol', 'BolC8t46898H' => 'bol', 'BolC8t46899H' => 'bol', 'BolC8t52630H' => 'bol', 'BolC8t52765H' => 'bol', 'BolC9t53824H' => 'bol', 'BraA03t09760Z' => 'bra', 'BraA03t10990Z' => 'bra', 'BraA05t20413Z' => 'bra', 'BraA08t35602Z' => 'bra', 'BraA09t36458Z' => 'bra', 'BraA09t42018Z' => 'bra', 'BraA09t42129Z' => 'bra', 'BraA10t42536Z' => 'bra', 'BraA10t42537Z' => 'bra', 'C01p10690' => 'bna', 'C02p03890' => 'bna', 'C02p03900' => 'bna', 'C03p04620' => 'bna', 'C04p19870' => 'bna', 'C04p59670' => 'bna', 'C05p02460' => 'bna', 'C05p02470' => 'bna', 'C08p00980' => 'bna', 'C08p00990' => 'bna', 'C08p51030' => 'bna', 'C08p52360' => 'bna', 'C09p09120' => 'bna', 'CAN.G19.15' => 'can', 'CAN.G251.10' => 'can', 'CAN.G251.9' => 'can', 'CAN.G398.24' => 'can', 'CAN.G410.32' => 'can', 'CAN.G881.2' => 'can', 'CANSAT01G3025' => 'cansat', 'CANSAT78G1211' => 'cansat', 'CANSAT78G1218' => 'cansat', 'CANSAT78G1521' => 'cansat', 'CANSAT78G1670' => 'cansat', 'CARHR003600' => 'chi', 'CARHR003610' => 'chi', 'CARHR006290' => 'chi', 'CARHR006430' => 'chi', 'CARHR124110' => 'chi', 'CARHR203870' => 'chi', 'CARHR203880' => 'chi', 'CARHR203890' => 'chi', 'CARHR276880' => 'chi', 'Carub.0001s0346' => 'cru', 'Carub.0001s0347' => 'cru', 'Carub.0001s0607' => 'cru', 'Carub.0003s2768' => 'cru', 'Carub.0003s2769' => 'cru', 'Carub.0004s1178' => 'cru', 'Carub.0006s0806' => 'cru', 'Carub.0006s0807' => 'cru', 'Carub.0006s0808' => 'cru', 'Carub.0008s0501' => 'cru', 'Carub.0008s2379' => 'cru', 'Ca_08655_v3' => 'car', 'Ca_08922_v3' => 'car', 'Ca_08923_v3' => 'car', 'Ca_09119_v3' => 'car', 'Ca_09703_v3' => 'car', 'Ca_09705_v3' => 'car', 'Ca_09835_v3' => 'car', 'Ca_26403_v3' => 'car', 'Ca_30719_v3' => 'car', 'CBR_g17958' => 'cbr', 'CBR_g40516' => 'cbr', 'Cc00_g05350' => 'ccan', 'Cc01_g18690' => 'ccan', 'Cc03_g04830' => 'ccan', 'Cc03_g04850' => 'ccan', 'CDE02G4469' => 'cde', 'CDE06G0883' => 'cde', 'CDE06G1295' => 'cde', 'CDE06G1390' => 'cde', 'CDE07G0584' => 'cde', 'CDE07G1084' => 'cde', 'CDE08G1259' => 'cde', 'Cfa002341' => 'cfa', 'Cfa024337' => 'cfa', 'Ciclev10004749m.g' => 'ccl', 'Ciclev10006127m.g' => 'ccl', 'Ciclev10019720m.g' => 'ccl', 'Ciclev10022652m.g' => 'ccl', 'CiPaw.01G190400' => 'cil', 'CiPaw.01G190500' => 'cil', 'CiPaw.02G116400' => 'cil', 'CiPaw.02G116500' => 'cil', 'CiPaw.04G183000' => 'cil', 'CiPaw.04G183300' => 'cil', 'ClCG05G004610' => 'cla', 'ClCG05G004620' => 'cla', 'ClCG06G006730' => 'cla', 'ClCG06G006740' => 'cla', 'ClCG11G003690' => 'cla', 'COL.COLO4_08276' => 'col', 'COL.COLO4_08277' => 'col', 'COL.COLO4_15787' => 'col', 'COL.COLO4_15789' => 'col', 'Cpa.g.c44815' => 'cpa', 'Cpa.g.sc52.144' => 'cpa', 'Cpa.g.sc58.46' => 'cpa', 'Cpa.g.sc58.47' => 'cpa', 'Cre08.g360900' => 'cre', 'CsaV3_2G013030' => 'csa', 'CsaV3_2G013050' => 'csa', 'CsaV3_2G015620' => 'csa', 'CsaV3_3G012590' => 'csa', 'CsaV3_3G012600' => 'csa', 'CSS0001641' => 'camsi', 'CSS0008310' => 'camsi', 'CSS0013011' => 'camsi', 'CSS0017147' => 'camsi', 'CSS0022970' => 'camsi', 'CSS0025655' => 'camsi', 'CSS0028665' => 'camsi', 'CSS0029117' => 'camsi', 'CSS0032024' => 'camsi', 'CSS0039681' => 'camsi', 'CSS0046516' => 'camsi', 'CSS0050307' => 'camsi', 'DCAR_005871' => 'dca', 'DCAR_007342' => 'dca', 'DCAR_024228' => 'dca', 'DCAR_027277' => 'dca', 'DCAR_030718' => 'dca', 'Dinv20287' => 'din', 'Dinv22461' => 'din', 'Dinv22464' => 'din', 'Dinv29912' => 'din', 'Dinv29913' => 'din', 'Dinv34580' => 'din', 'Dinv34582' => 'din', 'Dinv44632' => 'din', 'Duzib052G0266' => 'dzi', 'Duzib133G0907' => 'dzi', 'Duzib133G1034' => 'dzi', 'Duzib138G0207' => 'dzi', 'Duzib138G0491' => 'dzi', 'Duzib151G0812' => 'dzi', 'Duzib151G1166' => 'dzi', 'Duzib168G0192' => 'dzi', 'Duzib211G0077' => 'dzi', 'Duzib212G0429' => 'dzi', 'Duzib212G0472' => 'dzi', 'ECA233G2617' => 'eca', 'ECA236G4188' => 'eca', 'ECA240G0936' => 'eca', 'ECA240G1129' => 'eca', 'ECA247G0623' => 'eca', 'EL10Ac5g10451' => 'bvu', 'EL10Ac5g10453' => 'bvu', 'EL10Ac5g10894' => 'bvu', 'Eucgr.H00192' => 'egr', 'Eucgr.H00193' => 'egr', 'Eucgr.H00194' => 'egr', 'Eucgr.J01562' => 'egr', 'Eucgr.K03301' => 'egr', 'FAN02G0632' => 'fan', 'FAN05G5378' => 'fan', 'FAN09G3247' => 'fan', 'FAN12G0435' => 'fan', 'FAN12G2426' => 'fan', 'FAN14G1707' => 'fan', 'FAN14G4725' => 'fan', 'FAN15G2071' => 'fan', 'FAN17G3065' => 'fan', 'FAN19G1376' => 'fan', 'FAN20G0354' => 'fan', 'FAN20G2429' => 'fan', 'FAN20G2658' => 'fan', 'FAN24G2343' => 'fan', 'FAN27G2362' => 'fan', 'FAN28G1765' => 'fan', 'FvH4_1g16020' => 'fve', 'FvH4_2g04890' => 'fve', 'FvH4_2g22270' => 'fve', 'FvH4_4g02630' => 'fve', 'FvH4_4g02640' => 'fve', 'FvH4_6g02650' => 'fve', 'Glyma.02G140600' => 'gma', 'Glyma.03G159900' => 'gma', 'Glyma.05G234800' => 'gma', 'Glyma.07G269600' => 'gma', 'Glyma.08G042300' => 'gma', 'Glyma.10G033500' => 'gma', 'Glyma.10G185200' => 'gma', 'Glyma.17G004300' => 'gma', 'Glyma.19G161900' => 'gma', 'Glyma.20G205100' => 'gma', 'Glyma.20G205200' => 'gma', 'Gohir.A01G139101' => 'ghi', 'Gohir.A02G035600' => 'ghi', 'Gohir.A02G117901' => 'ghi', 'Gohir.A07G210100' => 'ghi', 'Gohir.A07G210200' => 'ghi', 'Gohir.A08G061100' => 'ghi', 'Gohir.A09G223000' => 'ghi', 'Gohir.A09G223100' => 'ghi', 'Gohir.A10G113900' => 'ghi', 'Gohir.A10G114000' => 'ghi', 'Gohir.D02G042300' => 'ghi', 'Gohir.D07G216100' => 'ghi', 'Gohir.D07G216200' => 'ghi', 'Gohir.D08G070400' => 'ghi', 'Gohir.D09G225000' => 'ghi', 'Gohir.D09G225100' => 'ghi', 'Gohir.D10G152300' => 'ghi', 'Gohir.D10G153200' => 'ghi', 'Gohir.D11G133701' => 'ghi', 'Gorai.004G074100' => 'gra', 'Gorai.005G046800' => 'gra', 'Gorai.006G246500' => 'gra', 'Gorai.006G246600' => 'gra', 'Gorai.007G142900' => 'gra', 'Gorai.011G171000' => 'gra', 'Gorai.011G171100' => 'gra', 'Gorai.013G104300' => 'gra', 'Gorai.013G104400' => 'gra', 'GSVIVG01000754001' => 'vvi', 'GSVIVG01000756001' => 'vvi', 'GSVIVG01010903001' => 'vvi', 'GSVIVG01017623001' => 'vvi', 'GSVIVG01018113001' => 'vvi', 'GSVIVG01018116001' => 'vvi', 'GSVIVG01018118001' => 'vvi', 'HanXRQChr03g0076211' => 'han', 'HanXRQChr03g0092431' => 'han', 'HanXRQChr03g0092441' => 'han', 'HanXRQChr03g0092591' => 'han', 'HanXRQChr03g0092671' => 'han', 'HanXRQChr03g0092681' => 'han', 'HanXRQChr03g0092691' => 'han', 'HanXRQChr03g0092701' => 'han', 'HanXRQChr03g0092721' => 'han', 'HanXRQChr03g0092731' => 'han', 'HanXRQChr04g0113681' => 'han', 'HanXRQChr10g0281371' => 'han', 'HanXRQChr11g0337141' => 'han', 'HanXRQChr13g0424521' => 'han', 'HanXRQChr13g0424531' => 'han', 'HanXRQChr13g0424541' => 'han', 'HanXRQChr16g0498221' => 'han', 'Haze_04377' => 'cav', 'Haze_11298' => 'cav', 'Haze_24547' => 'cav', 'Haze_24550' => 'cav', 'Haze_26587' => 'cav', 'Hma1.2p1_0650F.1_g195410' => 'hma', 'Hma1.2p1_0893F.1_g233470' => 'hma', 'HPP92_006508' => 'vpl', 'HPP92_024780' => 'vpl', 'Hund02688' => 'sun', 'Hund09380' => 'sun', 'Hund09381' => 'sun', 'Hund09832' => 'sun', 'Hund09833' => 'sun', 'Hund11351' => 'sun', 'Hund11513' => 'sun', 'Lalb_Chr06g0162591' => 'lal', 'Lalb_Chr06g0162601' => 'lal', 'Lalb_Chr06g0169321' => 'lal', 'Lalb_Chr09g0330951' => 'lal', 'Lalb_Chr16g0387631' => 'lal', 'Lalb_Chr21g0306241' => 'lal', 'Lalb_Chr25g0290051' => 'lal', 'Lalb_Chr25g0290061' => 'lal', 'Lalb_Chr25g0290071' => 'lal', 'Lj1g0003876' => 'lja', 'Lj1P1207T36' => 'lonja', 'Lj2C1156G12' => 'lonja', 'Lj3A793G39' => 'lonja', 'Lj3C580G2' => 'lonja', 'Lj3C780G2' => 'lonja', 'Lj3C780T4' => 'lonja', 'Lj3C793G9' => 'lonja', 'Lj4g0012960' => 'lja', 'Lj5g0021252' => 'lja', 'Lj5g0021484' => 'lja', 'Lj5g0024528' => 'lja', 'Lj6A399T12' => 'lonja', 'Lj6A656G65' => 'lonja', 'Lsat_1_v5_gn_3_125500' => 'lsa', 'Lsat_1_v5_gn_3_125540' => 'lsa', 'Lsat_1_v5_gn_5_72701' => 'lsa', 'Lsat_1_v5_gn_8_91560' => 'lsa', 'Lsat_1_v5_gn_9_9640' => 'lsa', 'Manes.01G200600' => 'mes', 'Manes.01G200700' => 'mes', 'Manes.03G168900' => 'mes', 'Manes.03G169000' => 'mes', 'Manes.05G085801' => 'mes', 'Manes.05G086200' => 'mes', 'Manes.15G036700' => 'mes', 'Manes.15G036900' => 'mes', 'Mapoly0004s0172' => 'mpo', 'Mapoly0023s0001' => 'mpo', 'Mapoly0142s0012' => 'mpo', 'MBI01_g32854_MAGBIO' => 'mbi', 'MBI11_g24427_MAGBIO' => 'mbi', 'MBI11_g47319_MAGBIO' => 'mbi', 'MCO01G433' => 'mco', 'MD00G1187800' => 'mdo', 'MD04G1226500' => 'mdo', 'MD05G1203900' => 'mdo', 'MD10G1191100' => 'mdo', 'MD12G1243500' => 'mdo', 'MD13G1207000' => 'mdo', 'MD13G1207100' => 'mdo', 'MD16G1208600' => 'mdo', 'Medtr1g050352' => 'mtr', 'Medtr1g070385' => 'mtr', 'Medtr1g070450' => 'mtr', 'Medtr1g075200' => 'mtr', 'Medtr1g075250' => 'mtr', 'Medtr1g075260' => 'mtr', 'Medtr1g475250' => 'mtr', 'Medtr4g075450' => 'mtr', 'Medtr7g096300' => 'mtr', 'Medtr8g105110' => 'mtr', 'MELO3C006470.2' => 'cme', 'MELO3C006471.2' => 'cme', 'MELO3C020772.2' => 'cme', 'MELO3C026780.2' => 'cme', 'MELO3C026781.2' => 'cme', 'Migut.D00390' => 'egut', 'Migut.G00435' => 'egut', 'Migut.G00436' => 'egut', 'Migut.G00718' => 'egut', 'MSTRG.21891' => 'ama', 'MSTRG.26910' => 'ama', 'MSTRG.4099' => 'ama', 'MSTRG.9925' => 'ama', 'Nitab4.5_0000165g0010' => 'nta', 'Nitab4.5_0000209g0180' => 'nta', 'Nitab4.5_0000244g0440' => 'nta', 'Nitab4.5_0000525g0220' => 'nta', 'Nitab4.5_0001597g0020' => 'nta', 'Nitab4.5_0001878g0040' => 'nta', 'Nitab4.5_0001878g0060' => 'nta', 'Nitab4.5_0002838g0100' => 'nta', 'Nitab4.5_0002838g0120' => 'nta', 'Nitab4.5_0004798g0030' => 'nta', 'Nitab4.5_0005420g0010' => 'nta', 'Nitab4.5_0005507g0010' => 'nta', 'Nitab4.5_0005574g0020' => 'nta', 'Nitab4.5_0005838g0010' => 'nta', 'Nitab4.5_0010580g0020' => 'nta', 'Nn1g02599' => 'nnu', 'Nn1g02608' => 'nnu', 'Nn3g17742' => 'nnu', 'Nn3g19534' => 'nnu', 'Nn3g19535' => 'nnu', 'Oeu008790.1' => 'oeu', 'Oeu008792.1' => 'oeu', 'Oeu032590.1' => 'oeu', 'Oeu035349.1' => 'oeu', 'Oeu049791.1' => 'oeu', 'Os01g0774500' => 'osa', 'Os03g0628800' => 'osa', 'Os03g0798600' => 'osa', 'Os05g0508800' => 'osa', 'Peaxi162Scf00036g02018' => 'pax', 'Peaxi162Scf00578g00032' => 'pax', 'Peaxi162Scf00578g00317' => 'pax', 'Peaxi162Scf00785g00114' => 'pax', 'Peaxi162Scf00813g00119' => 'pax', 'Peaxi162Scf00906g00227' => 'pax', 'PGR004G0875' => 'pgr', 'PGR004G2424' => 'pgr', 'PGR031G1239' => 'pgr', 'PGR031G2474' => 'pgr', 'PGR044G0423' => 'pgr', 'PGSC0003DMG400001128' => 'stu', 'PGSC0003DMG400007336' => 'stu', 'PGSC0003DMG400016318' => 'stu', 'PGSC0003DMG400016319' => 'stu', 'PGSC0003DMG400018074' => 'stu', 'Phvul.001G157700' => 'pvu', 'Phvul.002G148550' => 'pvu', 'Phvul.002G320200' => 'pvu', 'Phvul.003G089200' => 'pvu', 'Phvul.007G126000' => 'pvu', 'Phvul.007G126100' => 'pvu', 'Phvul.007G178000' => 'pvu', 'Phvul.007G178200' => 'pvu', 'Potri.002G043000' => 'ptr', 'Potri.002G043200' => 'ptr', 'Potri.003G123750' => 'ptr', 'Potri.005G055401' => 'ptr', 'Potri.005G219700' => 'ptr', 'Potri.005G220000' => 'ptr', 'Potri.008G161901' => 'ptr', 'Potri.008G162000' => 'ptr', 'Potri.008G162400' => 'ptr', 'Potri.010G076900' => 'ptr', 'Pp3c12_9180' => 'ppa', 'Pp3c13_19770' => 'ppa', 'Pp3c14_22950' => 'ppa', 'Pp3c16_12160' => 'ppa', 'Pp3c27_7820' => 'ppa', 'Pp3c2_3490' => 'ppa', 'Pp3c3_23700' => 'ppa', 'Pp3c3_36520' => 'ppa', 'Pp3c4_15250' => 'ppa', 'PRCOL_00007002' => 'pco', 'Prupe.1G030600' => 'ppe', 'Prupe.1G030700' => 'ppe', 'Prupe.6G345200' => 'ppe', 'Prupe.8G230300' => 'ppe', 'Prupe.8G230500' => 'ppe', 'Psat3g059600' => 'psa', 'Psat5g200920' => 'psa', 'Psat6g056440' => 'psa', 'Psat6g057360' => 'psa', 'Psat6g134120' => 'psa', 'Psat6g134160' => 'psa', 'Psat7g008640' => 'psa', 'Psat7g185240' => 'psa', 'PSO017G1330' => 'pso', 'PSO063G6097' => 'pso', 'PSO170G0835' => 'pso', 'PSO170G2499' => 'pso', 'PSO210G5058' => 'pso', 'PSO210G6154' => 'pso', 'PSO585G0031' => 'pso', 'PSO832G0264' => 'pso', 'PSO832G4288' => 'pso', 'QL03p027355' => 'qlo', 'QL03p027430' => 'qlo', 'QL04p081380' => 'qlo', 'QL06p015642' => 'qlo', 'QL06p015650' => 'qlo', 'QL06p015686' => 'qlo', 'QL12p042927' => 'qlo', 'QL93p1863_0035' => 'qlo', 'RcHm_v2.0_Chr3g0450581' => 'rch', 'RcHm_v2.0_Chr4g0390371' => 'rch', 'RcHm_v2.0_Chr4g0390381' => 'rch', 'RcHm_v2.0_Chr4g0390491' => 'rch', 'RcHm_v2.0_Chr4g0390501' => 'rch', 'RcHm_v2.0_Chr6g0289231' => 'rch', 'Rhsim04G0190400' => 'rsi', 'Rhsim04G0190500' => 'rsi', 'Rhsim04G0190600' => 'rsi', 'Rhsim13G0031400' => 'rsi', 'Rhsim13G0165600' => 'rsi', 'RhsimUnG0114600' => 'rsi', 'RhsimUnG0114700' => 'rsi', 'Sabra02G0034800' => 'sbr', 'Sabra02G0035100' => 'sbr', 'Sabra05G0168600' => 'sbr', 'Sabra05G0168800' => 'sbr', 'Sabra08G0123700' => 'sbr', 'Sabra10G0031900' => 'sbr', 'Sabra13G0039000' => 'sbr', 'SalBow2G0782' => 'sbo', 'SalBow2G1403' => 'sbo', 'SalBow4G0074' => 'sbo', 'SalBow4G2635' => 'sbo', 'SalBow5G3010' => 'sbo', 'Sc05g0000870' => 'sci', 'Sc05g0000890' => 'sci', 'Sc13g0005000' => 'sci', 'Sc13g0005030' => 'sci', 'Sc19g0003790' => 'sci', 'Sc19g0003800' => 'sci', 'Sed0003467' => 'sed', 'Sed0009355' => 'sed', 'Sed0009894' => 'sed', 'Sed0011972' => 'sed', 'Sed0021483' => 'sed', 'Sed0021750' => 'sed', 'Sed0026279' => 'sed', 'SEGI_05312' => 'sgi', 'SEGI_10112' => 'sgi', 'SEGI_15835' => 'sgi', 'SEGI_30386' => 'sgi', 'SEGI_34122' => 'sgi', 'SEGI_35063' => 'sgi', 'SGA_v2.0_scaffold101G29794' => 'sas', 'SGA_v2.0_scaffold1G00573' => 'sas', 'SGA_v2.0_scaffold79G25637' => 'sas', 'SGA_v2.0_scaffold88G27283' => 'sas', 'SGA_v2.0_scaffold88G27285' => 'sas', 'SGA_v2.0_scaffold88G27331' => 'sas', 'SHI09937' => 'shi', 'SMO119G0302' => 'smo', 'SMO137G0231' => 'smo', 'SMO367G1151' => 'smo', 'Solyc02g082000.3' => 'sly', 'Solyc06g031670.3' => 'sly', 'Solyc06g053810.3' => 'sly', 'Solyc07g025457.1' => 'sly', 'Solyc08g059740.1' => 'sly', 'Solyc08g059750.3' => 'sly', 'Solyc09g083370.3' => 'sly', 'Solyc12g038950.3' => 'sly', 'Sopen02g026630' => 'spe', 'Sopen06g018930' => 'spe', 'Sopen06g018940' => 'spe', 'Sopen08g009460' => 'spe', 'Sopen09g032290' => 'spe', 'Sp1g03080' => 'spa', 'Sp1g03090' => 'spa', 'Sp1g05480' => 'spa', 'Sp2g07860' => 'spa', 'Sp2g08430' => 'spa', 'Sp2g08440' => 'spa', 'Sp2g26200' => 'spa', 'Sp4g13170' => 'spa', 'Sp6g33840' => 'spa', 'SpUn1204_0010' => 'spa', 'TAR365G0908' => 'tar', 'TAR381G1270' => 'tar', 'TAR381G1651' => 'tar', 'TAR625G1131' => 'tar', 'TAR633G0962' => 'tar', 'TAR633G1729' => 'tar', 'TAR633G1864' => 'tar', 'TAR636G0221' => 'tar', 'TAR636G0314' => 'tar', 'TAR636G3202' => 'tar', 'THA.LOC104800805' => 'tha', 'THA.LOC104801096' => 'tha', 'THA.LOC104801555' => 'tha', 'THA.LOC104808491' => 'tha', 'THA.LOC104808595' => 'tha', 'THA.LOC104815985' => 'tha', 'THA.LOC104822250' => 'tha', 'THA.LOC104826071' => 'tha', 'Thecc.01G265200' => 'tca', 'Thecc.01G265300' => 'tca', 'Thecc.01G265700' => 'tca', 'Thecc.03G109100' => 'tca', 'Thecc.04G245900' => 'tca', 'Thecc.04G246000' => 'tca', 'Thhalv10003334m.g' => 'esa', 'Thhalv10005508m.g' => 'esa', 'Thhalv10005643m.g' => 'esa', 'Thhalv10007316m.g' => 'esa', 'Thhalv10009006m.g' => 'esa', 'Thhalv10009309m.g' => 'esa', 'Thhalv10014917m.g' => 'esa', 'Thhalv10014919m.g' => 'esa', 'Thhalv10015393m.g' => 'esa', 'Thhalv10016515m.g' => 'esa', 'Thhalv10029242m.g' => 'esa', 'TPR.G16654' => 'tpr', 'TPR.G20589' => 'tpr', 'TPR.G23029' => 'tpr', 'TPR.G27731' => 'tpr', 'TPR.G28889' => 'tpr', 'TPR.G28899' => 'tpr', 'TPR.G30846' => 'tpr', 'TPR.G5452' => 'tpr', 'TPR.G5713' => 'tpr', 'TPR.G9046' => 'tpr', 'TPR.G9061' => 'tpr', 'TWI09G1075' => 'twi', 'TWI12G0806' => 'twi', 'TWI18G0108' => 'twi', 'TWI53G1361' => 'twi', 'TWI73G0185' => 'twi', 'TWI73G0427' => 'twi', 'unitig_37.g12001' => 'ugi', 'unitig_747.g21660' => 'ugi', 'unitig_748.g7232' => 'ugi', 'unitig_748.g7315' => 'ugi', 'unitig_85.g27262' => 'ugi', 'unitig_92.g28220' => 'ugi', 'vmacro02632' => 'vma', 'vmacro08410' => 'vma', 'vmacro08411' => 'vma', 'vmacro15407' => 'vma', 'VMungo0251G3619' => 'vmu', 'VMungo0720G1204' => 'vmu', 'VMungo0720G1918' => 'vmu', 'VMungo0720G2387' => 'vmu', 'VMungo0720G2961' => 'vmu', 'VMungo1215G2154' => 'vmu', 'VMungo1383G2411' => 'vmu', 'Zm00001eb051130' => 'zma', 'Zm00001eb116830' => 'zma', 'Zm00001eb116850' => 'zma', 'Zm00001eb151740' => 'zma', 'Zm00001eb292360' => 'zma', 'Zm00001eb301640' => 'zma' ), 'gf_id' => 'HOM05D000856', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000856' ), 'data_identifier' => 'HOM05D000856', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000856', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p00010' => 'bna', 'A03p04160' => 'bna', 'A03p17160' => 'bna', 'A04p23370' => 'bna', 'A05p14860' => 'bna', 'A08p37020' => 'bna', 'A09p08050' => 'bna', 'A09p66800' => 'bna', 'A09p67940' => 'bna', 'A10p02680' => 'bna', 'A10p05320' => 'bna', 'Aa31LG1G20560' => 'aar', 'Aa31LG1G20610' => 'aar', 'Aa31LG1G7810' => 'aar', 'Aa31LG5G3590' => 'aar', 'Aa31LG5G6140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3819' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4683' => 'aag', 'Actinidia04480' => 'ach', 'Actinidia05466' => 'ach', 'Actinidia08445' => 'ach', 'Actinidia21170' => 'ach', 'Actinidia24812' => 'ach', 'Actinidia24951' => 'ach', 'Actinidia40088' => 'ach', 'Ah.02g111660' => 'amhyb', 'Ah.11g048900' => 'amhyb', 'Ah.11g049910' => 'amhyb', 'AL1G13870' => 'aly', 'AL1G13880' => 'aly', 'AL1G16760' => 'aly', 'AL390U10020' => 'aly', 'AL4G25520' => 'aly', 'AL6G19890' => 'aly', 'AL6G19900' => 'aly', 'AL6G19910' => 'aly', 'AL8G40100' => 'aly', 'Aqoxy2G03562' => 'aox', 'Aqoxy5G00316' => 'aox', 'Aqoxy5G00926' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1628KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1H403S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2FU6SJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.882I6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8YRY2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YN1SN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AF70II' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZA8L1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F916KL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHRD8H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KTZ8QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S22EMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8M29T' => 'arhy', 'AT1G04270' => 'ath', 'AT1G04280' => 'ath', 'AT1G06750' => 'ath', 'AT1G33850' => 'ath', 'AT2G30630' => 'ath', 'AT5G09490' => 'ath', 'AT5G09500' => 'ath', 'AT5G09510' => 'ath', 'AT5G43640' => 'ath', 'AT5G63070' => 'ath', 'ATR0605G315' => 'atr', 'Atru.chr11.175' => 'acertr', 'Atru.chr11.653' => 'acertr', 'Atru.chr3.1616' => 'acertr', 'Atru.chr4.2230' => 'acertr', 'Atru.chr4.2232' => 'acertr', 'Atru.chr5.1598' => 'acertr', 'Atru.chr5.1600' => 'acertr', 'Atru.chr5.2188' => 'acertr', 'AUR62008326' => 'cqu', 'AUR62011922' => 'cqu', 'AUR62011924' => 'cqu', 'AUR62021771' => 'cqu', 'AUR62032237' => 'cqu', 'AUR62032240' => 'cqu', 'BcaB01g05572' => 'bca', 'BcaB02g10337' => 'bca', 'BcaB04g19944' => 'bca', 'BcaB05g21548' => 'bca', 'BcaB05g21549' => 'bca', 'BcaB05g23227' => 'bca', 'BcaB06g26256' => 'bca', 'BcaB06g26257' => 'bca', 'BcaB06g28379' => 'bca', 'BcaC02g11159' => 'bca', 'BcaC03g13258' => 'bca', 'BcaC03g13259' => 'bca', 'BcaC05g24456' => 'bca', 'BcaC05g24457' => 'bca', 'BcaC07g36922' => 'bca', 'BcaC07g36923' => 'bca', 'BcaC07g42050' => 'bca', 'BcaC07g42176' => 'bca', 'BcaC07g42195' => 'bca', 'BcaC07g42196' => 'bca', 'BcaNung06674' => 'bca', 'BolC2t06351H' => 'bol', 'BolC2t06352H' => 'bol', 'BolC3t12993H' => 'bol', 'BolC4t23525H' => 'bol', 'BolC4t27475H' => 'bol', 'BolC5t29025H' => 'bol', 'BolC5t29026H' => 'bol', 'BolC8t46898H' => 'bol', 'BolC8t46899H' => 'bol', 'BolC8t52630H' => 'bol', 'BolC8t52765H' => 'bol', 'BolC9t53824H' => 'bol', 'BraA03t09760Z' => 'bra', 'BraA03t10990Z' => 'bra', 'BraA05t20413Z' => 'bra', 'BraA08t35602Z' => 'bra', 'BraA09t36458Z' => 'bra', 'BraA09t42018Z' => 'bra', 'BraA09t42129Z' => 'bra', 'BraA10t42536Z' => 'bra', 'BraA10t42537Z' => 'bra', 'C01p10690' => 'bna', 'C02p03890' => 'bna', 'C02p03900' => 'bna', 'C03p04620' => 'bna', 'C04p19870' => 'bna', 'C04p59670' => 'bna', 'C05p02460' => 'bna', 'C05p02470' => 'bna', 'C08p00980' => 'bna', 'C08p00990' => 'bna', 'C08p51030' => 'bna', 'C08p52360' => 'bna', 'C09p09120' => 'bna', 'CAN.G19.15' => 'can', 'CAN.G251.10' => 'can', 'CAN.G251.9' => 'can', 'CAN.G398.24' => 'can', 'CAN.G410.32' => 'can', 'CAN.G881.2' => 'can', 'CANSAT01G3025' => 'cansat', 'CANSAT78G1211' => 'cansat', 'CANSAT78G1218' => 'cansat', 'CANSAT78G1521' => 'cansat', 'CANSAT78G1670' => 'cansat', 'CARHR003600' => 'chi', 'CARHR003610' => 'chi', 'CARHR006290' => 'chi', 'CARHR006430' => 'chi', 'CARHR124110' => 'chi', 'CARHR203870' => 'chi', 'CARHR203880' => 'chi', 'CARHR203890' => 'chi', 'CARHR276880' => 'chi', 'Carub.0001s0346' => 'cru', 'Carub.0001s0347' => 'cru', 'Carub.0001s0607' => 'cru', 'Carub.0003s2768' => 'cru', 'Carub.0003s2769' => 'cru', 'Carub.0004s1178' => 'cru', 'Carub.0006s0806' => 'cru', 'Carub.0006s0807' => 'cru', 'Carub.0006s0808' => 'cru', 'Carub.0008s0501' => 'cru', 'Carub.0008s2379' => 'cru', 'Ca_08655_v3' => 'car', 'Ca_08922_v3' => 'car', 'Ca_08923_v3' => 'car', 'Ca_09119_v3' => 'car', 'Ca_09703_v3' => 'car', 'Ca_09705_v3' => 'car', 'Ca_09835_v3' => 'car', 'Ca_26403_v3' => 'car', 'Ca_30719_v3' => 'car', 'CBR_g17958' => 'cbr', 'CBR_g40516' => 'cbr', 'Cc00_g05350' => 'ccan', 'Cc01_g18690' => 'ccan', 'Cc03_g04830' => 'ccan', 'Cc03_g04850' => 'ccan', 'CDE02G4469' => 'cde', 'CDE06G0883' => 'cde', 'CDE06G1295' => 'cde', 'CDE06G1390' => 'cde', 'CDE07G0584' => 'cde', 'CDE07G1084' => 'cde', 'CDE08G1259' => 'cde', 'Cfa002341' => 'cfa', 'Cfa024337' => 'cfa', 'Ciclev10004749m.g' => 'ccl', 'Ciclev10006127m.g' => 'ccl', 'Ciclev10019720m.g' => 'ccl', 'Ciclev10022652m.g' => 'ccl', 'CiPaw.01G190400' => 'cil', 'CiPaw.01G190500' => 'cil', 'CiPaw.02G116400' => 'cil', 'CiPaw.02G116500' => 'cil', 'CiPaw.04G183000' => 'cil', 'CiPaw.04G183300' => 'cil', 'ClCG05G004610' => 'cla', 'ClCG05G004620' => 'cla', 'ClCG06G006730' => 'cla', 'ClCG06G006740' => 'cla', 'ClCG11G003690' => 'cla', 'COL.COLO4_08276' => 'col', 'COL.COLO4_08277' => 'col', 'COL.COLO4_15787' => 'col', 'COL.COLO4_15789' => 'col', 'Cpa.g.c44815' => 'cpa', 'Cpa.g.sc52.144' => 'cpa', 'Cpa.g.sc58.46' => 'cpa', 'Cpa.g.sc58.47' => 'cpa', 'Cre08.g360900' => 'cre', 'CsaV3_2G013030' => 'csa', 'CsaV3_2G013050' => 'csa', 'CsaV3_2G015620' => 'csa', 'CsaV3_3G012590' => 'csa', 'CsaV3_3G012600' => 'csa', 'CSS0001641' => 'camsi', 'CSS0008310' => 'camsi', 'CSS0013011' => 'camsi', 'CSS0017147' => 'camsi', 'CSS0022970' => 'camsi', 'CSS0025655' => 'camsi', 'CSS0028665' => 'camsi', 'CSS0029117' => 'camsi', 'CSS0032024' => 'camsi', 'CSS0039681' => 'camsi', 'CSS0046516' => 'camsi', 'CSS0050307' => 'camsi', 'DCAR_005871' => 'dca', 'DCAR_007342' => 'dca', 'DCAR_024228' => 'dca', 'DCAR_027277' => 'dca', 'DCAR_030718' => 'dca', 'Dinv20287' => 'din', 'Dinv22461' => 'din', 'Dinv22464' => 'din', 'Dinv29912' => 'din', 'Dinv29913' => 'din', 'Dinv34580' => 'din', 'Dinv34582' => 'din', 'Dinv44632' => 'din', 'Duzib052G0266' => 'dzi', 'Duzib133G0907' => 'dzi', 'Duzib133G1034' => 'dzi', 'Duzib138G0207' => 'dzi', 'Duzib138G0491' => 'dzi', 'Duzib151G0812' => 'dzi', 'Duzib151G1166' => 'dzi', 'Duzib168G0192' => 'dzi', 'Duzib211G0077' => 'dzi', 'Duzib212G0429' => 'dzi', 'Duzib212G0472' => 'dzi', 'ECA233G2617' => 'eca', 'ECA236G4188' => 'eca', 'ECA240G0936' => 'eca', 'ECA240G1129' => 'eca', 'ECA247G0623' => 'eca', 'EL10Ac5g10451' => 'bvu', 'EL10Ac5g10453' => 'bvu', 'EL10Ac5g10894' => 'bvu', 'Eucgr.H00192' => 'egr', 'Eucgr.H00193' => 'egr', 'Eucgr.H00194' => 'egr', 'Eucgr.J01562' => 'egr', 'Eucgr.K03301' => 'egr', 'FAN02G0632' => 'fan', 'FAN05G5378' => 'fan', 'FAN09G3247' => 'fan', 'FAN12G0435' => 'fan', 'FAN12G2426' => 'fan', 'FAN14G1707' => 'fan', 'FAN14G4725' => 'fan', 'FAN15G2071' => 'fan', 'FAN17G3065' => 'fan', 'FAN19G1376' => 'fan', 'FAN20G0354' => 'fan', 'FAN20G2429' => 'fan', 'FAN20G2658' => 'fan', 'FAN24G2343' => 'fan', 'FAN27G2362' => 'fan', 'FAN28G1765' => 'fan', 'FvH4_1g16020' => 'fve', 'FvH4_2g04890' => 'fve', 'FvH4_2g22270' => 'fve', 'FvH4_4g02630' => 'fve', 'FvH4_4g02640' => 'fve', 'FvH4_6g02650' => 'fve', 'Glyma.02G140600' => 'gma', 'Glyma.03G159900' => 'gma', 'Glyma.05G234800' => 'gma', 'Glyma.07G269600' => 'gma', 'Glyma.08G042300' => 'gma', 'Glyma.10G033500' => 'gma', 'Glyma.10G185200' => 'gma', 'Glyma.17G004300' => 'gma', 'Glyma.19G161900' => 'gma', 'Glyma.20G205100' => 'gma', 'Glyma.20G205200' => 'gma', 'Gohir.A01G139101' => 'ghi', 'Gohir.A02G035600' => 'ghi', 'Gohir.A02G117901' => 'ghi', 'Gohir.A07G210100' => 'ghi', 'Gohir.A07G210200' => 'ghi', 'Gohir.A08G061100' => 'ghi', 'Gohir.A09G223000' => 'ghi', 'Gohir.A09G223100' => 'ghi', 'Gohir.A10G113900' => 'ghi', 'Gohir.A10G114000' => 'ghi', 'Gohir.D02G042300' => 'ghi', 'Gohir.D07G216100' => 'ghi', 'Gohir.D07G216200' => 'ghi', 'Gohir.D08G070400' => 'ghi', 'Gohir.D09G225000' => 'ghi', 'Gohir.D09G225100' => 'ghi', 'Gohir.D10G152300' => 'ghi', 'Gohir.D10G153200' => 'ghi', 'Gohir.D11G133701' => 'ghi', 'Gorai.004G074100' => 'gra', 'Gorai.005G046800' => 'gra', 'Gorai.006G246500' => 'gra', 'Gorai.006G246600' => 'gra', 'Gorai.007G142900' => 'gra', 'Gorai.011G171000' => 'gra', 'Gorai.011G171100' => 'gra', 'Gorai.013G104300' => 'gra', 'Gorai.013G104400' => 'gra', 'GSVIVG01000754001' => 'vvi', 'GSVIVG01000756001' => 'vvi', 'GSVIVG01010903001' => 'vvi', 'GSVIVG01017623001' => 'vvi', 'GSVIVG01018113001' => 'vvi', 'GSVIVG01018116001' => 'vvi', 'GSVIVG01018118001' => 'vvi', 'HanXRQChr03g0076211' => 'han', 'HanXRQChr03g0092431' => 'han', 'HanXRQChr03g0092441' => 'han', 'HanXRQChr03g0092591' => 'han', 'HanXRQChr03g0092671' => 'han', 'HanXRQChr03g0092681' => 'han', 'HanXRQChr03g0092691' => 'han', 'HanXRQChr03g0092701' => 'han', 'HanXRQChr03g0092721' => 'han', 'HanXRQChr03g0092731' => 'han', 'HanXRQChr04g0113681' => 'han', 'HanXRQChr10g0281371' => 'han', 'HanXRQChr11g0337141' => 'han', 'HanXRQChr13g0424521' => 'han', 'HanXRQChr13g0424531' => 'han', 'HanXRQChr13g0424541' => 'han', 'HanXRQChr16g0498221' => 'han', 'Haze_04377' => 'cav', 'Haze_11298' => 'cav', 'Haze_24547' => 'cav', 'Haze_24550' => 'cav', 'Haze_26587' => 'cav', 'Hma1.2p1_0650F.1_g195410' => 'hma', 'Hma1.2p1_0893F.1_g233470' => 'hma', 'HPP92_006508' => 'vpl', 'HPP92_024780' => 'vpl', 'Hund02688' => 'sun', 'Hund09380' => 'sun', 'Hund09381' => 'sun', 'Hund09832' => 'sun', 'Hund09833' => 'sun', 'Hund11351' => 'sun', 'Hund11513' => 'sun', 'Lalb_Chr06g0162591' => 'lal', 'Lalb_Chr06g0162601' => 'lal', 'Lalb_Chr06g0169321' => 'lal', 'Lalb_Chr09g0330951' => 'lal', 'Lalb_Chr16g0387631' => 'lal', 'Lalb_Chr21g0306241' => 'lal', 'Lalb_Chr25g0290051' => 'lal', 'Lalb_Chr25g0290061' => 'lal', 'Lalb_Chr25g0290071' => 'lal', 'Lj1g0003876' => 'lja', 'Lj1P1207T36' => 'lonja', 'Lj2C1156G12' => 'lonja', 'Lj3A793G39' => 'lonja', 'Lj3C580G2' => 'lonja', 'Lj3C780G2' => 'lonja', 'Lj3C780T4' => 'lonja', 'Lj3C793G9' => 'lonja', 'Lj4g0012960' => 'lja', 'Lj5g0021252' => 'lja', 'Lj5g0021484' => 'lja', 'Lj5g0024528' => 'lja', 'Lj6A399T12' => 'lonja', 'Lj6A656G65' => 'lonja', 'Lsat_1_v5_gn_3_125500' => 'lsa', 'Lsat_1_v5_gn_3_125540' => 'lsa', 'Lsat_1_v5_gn_5_72701' => 'lsa', 'Lsat_1_v5_gn_8_91560' => 'lsa', 'Lsat_1_v5_gn_9_9640' => 'lsa', 'Manes.01G200600' => 'mes', 'Manes.01G200700' => 'mes', 'Manes.03G168900' => 'mes', 'Manes.03G169000' => 'mes', 'Manes.05G085801' => 'mes', 'Manes.05G086200' => 'mes', 'Manes.15G036700' => 'mes', 'Manes.15G036900' => 'mes', 'Mapoly0004s0172' => 'mpo', 'Mapoly0023s0001' => 'mpo', 'Mapoly0142s0012' => 'mpo', 'MBI01_g32854_MAGBIO' => 'mbi', 'MBI11_g24427_MAGBIO' => 'mbi', 'MBI11_g47319_MAGBIO' => 'mbi', 'MCO01G433' => 'mco', 'MD00G1187800' => 'mdo', 'MD04G1226500' => 'mdo', 'MD05G1203900' => 'mdo', 'MD10G1191100' => 'mdo', 'MD12G1243500' => 'mdo', 'MD13G1207000' => 'mdo', 'MD13G1207100' => 'mdo', 'MD16G1208600' => 'mdo', 'Medtr1g050352' => 'mtr', 'Medtr1g070385' => 'mtr', 'Medtr1g070450' => 'mtr', 'Medtr1g075200' => 'mtr', 'Medtr1g075250' => 'mtr', 'Medtr1g075260' => 'mtr', 'Medtr1g475250' => 'mtr', 'Medtr4g075450' => 'mtr', 'Medtr7g096300' => 'mtr', 'Medtr8g105110' => 'mtr', 'MELO3C006470.2' => 'cme', 'MELO3C006471.2' => 'cme', 'MELO3C020772.2' => 'cme', 'MELO3C026780.2' => 'cme', 'MELO3C026781.2' => 'cme', 'Migut.D00390' => 'egut', 'Migut.G00435' => 'egut', 'Migut.G00436' => 'egut', 'Migut.G00718' => 'egut', 'MSTRG.21891' => 'ama', 'MSTRG.26910' => 'ama', 'MSTRG.4099' => 'ama', 'MSTRG.9925' => 'ama', 'Nitab4.5_0000165g0010' => 'nta', 'Nitab4.5_0000209g0180' => 'nta', 'Nitab4.5_0000244g0440' => 'nta', 'Nitab4.5_0000525g0220' => 'nta', 'Nitab4.5_0001597g0020' => 'nta', 'Nitab4.5_0001878g0040' => 'nta', 'Nitab4.5_0001878g0060' => 'nta', 'Nitab4.5_0002838g0100' => 'nta', 'Nitab4.5_0002838g0120' => 'nta', 'Nitab4.5_0004798g0030' => 'nta', 'Nitab4.5_0005420g0010' => 'nta', 'Nitab4.5_0005507g0010' => 'nta', 'Nitab4.5_0005574g0020' => 'nta', 'Nitab4.5_0005838g0010' => 'nta', 'Nitab4.5_0010580g0020' => 'nta', 'Nn1g02599' => 'nnu', 'Nn1g02608' => 'nnu', 'Nn3g17742' => 'nnu', 'Nn3g19534' => 'nnu', 'Nn3g19535' => 'nnu', 'Oeu008790.1' => 'oeu', 'Oeu008792.1' => 'oeu', 'Oeu032590.1' => 'oeu', 'Oeu035349.1' => 'oeu', 'Oeu049791.1' => 'oeu', 'Os01g0774500' => 'osa', 'Os03g0628800' => 'osa', 'Os03g0798600' => 'osa', 'Os05g0508800' => 'osa', 'Peaxi162Scf00036g02018' => 'pax', 'Peaxi162Scf00578g00032' => 'pax', 'Peaxi162Scf00578g00317' => 'pax', 'Peaxi162Scf00785g00114' => 'pax', 'Peaxi162Scf00813g00119' => 'pax', 'Peaxi162Scf00906g00227' => 'pax', 'PGR004G0875' => 'pgr', 'PGR004G2424' => 'pgr', 'PGR031G1239' => 'pgr', 'PGR031G2474' => 'pgr', 'PGR044G0423' => 'pgr', 'PGSC0003DMG400001128' => 'stu', 'PGSC0003DMG400007336' => 'stu', 'PGSC0003DMG400016318' => 'stu', 'PGSC0003DMG400016319' => 'stu', 'PGSC0003DMG400018074' => 'stu', 'Phvul.001G157700' => 'pvu', 'Phvul.002G148550' => 'pvu', 'Phvul.002G320200' => 'pvu', 'Phvul.003G089200' => 'pvu', 'Phvul.007G126000' => 'pvu', 'Phvul.007G126100' => 'pvu', 'Phvul.007G178000' => 'pvu', 'Phvul.007G178200' => 'pvu', 'Potri.002G043000' => 'ptr', 'Potri.002G043200' => 'ptr', 'Potri.003G123750' => 'ptr', 'Potri.005G055401' => 'ptr', 'Potri.005G219700' => 'ptr', 'Potri.005G220000' => 'ptr', 'Potri.008G161901' => 'ptr', 'Potri.008G162000' => 'ptr', 'Potri.008G162400' => 'ptr', 'Potri.010G076900' => 'ptr', 'Pp3c12_9180' => 'ppa', 'Pp3c13_19770' => 'ppa', 'Pp3c14_22950' => 'ppa', 'Pp3c16_12160' => 'ppa', 'Pp3c27_7820' => 'ppa', 'Pp3c2_3490' => 'ppa', 'Pp3c3_23700' => 'ppa', 'Pp3c3_36520' => 'ppa', 'Pp3c4_15250' => 'ppa', 'PRCOL_00007002' => 'pco', 'Prupe.1G030600' => 'ppe', 'Prupe.1G030700' => 'ppe', 'Prupe.6G345200' => 'ppe', 'Prupe.8G230300' => 'ppe', 'Prupe.8G230500' => 'ppe', 'Psat3g059600' => 'psa', 'Psat5g200920' => 'psa', 'Psat6g056440' => 'psa', 'Psat6g057360' => 'psa', 'Psat6g134120' => 'psa', 'Psat6g134160' => 'psa', 'Psat7g008640' => 'psa', 'Psat7g185240' => 'psa', 'PSO017G1330' => 'pso', 'PSO063G6097' => 'pso', 'PSO170G0835' => 'pso', 'PSO170G2499' => 'pso', 'PSO210G5058' => 'pso', 'PSO210G6154' => 'pso', 'PSO585G0031' => 'pso', 'PSO832G0264' => 'pso', 'PSO832G4288' => 'pso', 'QL03p027355' => 'qlo', 'QL03p027430' => 'qlo', 'QL04p081380' => 'qlo', 'QL06p015642' => 'qlo', 'QL06p015650' => 'qlo', 'QL06p015686' => 'qlo', 'QL12p042927' => 'qlo', 'QL93p1863_0035' => 'qlo', 'RcHm_v2.0_Chr3g0450581' => 'rch', 'RcHm_v2.0_Chr4g0390371' => 'rch', 'RcHm_v2.0_Chr4g0390381' => 'rch', 'RcHm_v2.0_Chr4g0390491' => 'rch', 'RcHm_v2.0_Chr4g0390501' => 'rch', 'RcHm_v2.0_Chr6g0289231' => 'rch', 'Rhsim04G0190400' => 'rsi', 'Rhsim04G0190500' => 'rsi', 'Rhsim04G0190600' => 'rsi', 'Rhsim13G0031400' => 'rsi', 'Rhsim13G0165600' => 'rsi', 'RhsimUnG0114600' => 'rsi', 'RhsimUnG0114700' => 'rsi', 'Sabra02G0034800' => 'sbr', 'Sabra02G0035100' => 'sbr', 'Sabra05G0168600' => 'sbr', 'Sabra05G0168800' => 'sbr', 'Sabra08G0123700' => 'sbr', 'Sabra10G0031900' => 'sbr', 'Sabra13G0039000' => 'sbr', 'SalBow2G0782' => 'sbo', 'SalBow2G1403' => 'sbo', 'SalBow4G0074' => 'sbo', 'SalBow4G2635' => 'sbo', 'SalBow5G3010' => 'sbo', 'Sc05g0000870' => 'sci', 'Sc05g0000890' => 'sci', 'Sc13g0005000' => 'sci', 'Sc13g0005030' => 'sci', 'Sc19g0003790' => 'sci', 'Sc19g0003800' => 'sci', 'Sed0003467' => 'sed', 'Sed0009355' => 'sed', 'Sed0009894' => 'sed', 'Sed0011972' => 'sed', 'Sed0021483' => 'sed', 'Sed0021750' => 'sed', 'Sed0026279' => 'sed', 'SEGI_05312' => 'sgi', 'SEGI_10112' => 'sgi', 'SEGI_15835' => 'sgi', 'SEGI_30386' => 'sgi', 'SEGI_34122' => 'sgi', 'SEGI_35063' => 'sgi', 'SGA_v2.0_scaffold101G29794' => 'sas', 'SGA_v2.0_scaffold1G00573' => 'sas', 'SGA_v2.0_scaffold79G25637' => 'sas', 'SGA_v2.0_scaffold88G27283' => 'sas', 'SGA_v2.0_scaffold88G27285' => 'sas', 'SGA_v2.0_scaffold88G27331' => 'sas', 'SHI09937' => 'shi', 'SMO119G0302' => 'smo', 'SMO137G0231' => 'smo', 'SMO367G1151' => 'smo', 'Solyc02g082000.3' => 'sly', 'Solyc06g031670.3' => 'sly', 'Solyc06g053810.3' => 'sly', 'Solyc07g025457.1' => 'sly', 'Solyc08g059740.1' => 'sly', 'Solyc08g059750.3' => 'sly', 'Solyc09g083370.3' => 'sly', 'Solyc12g038950.3' => 'sly', 'Sopen02g026630' => 'spe', 'Sopen06g018930' => 'spe', 'Sopen06g018940' => 'spe', 'Sopen08g009460' => 'spe', 'Sopen09g032290' => 'spe', 'Sp1g03080' => 'spa', 'Sp1g03090' => 'spa', 'Sp1g05480' => 'spa', 'Sp2g07860' => 'spa', 'Sp2g08430' => 'spa', 'Sp2g08440' => 'spa', 'Sp2g26200' => 'spa', 'Sp4g13170' => 'spa', 'Sp6g33840' => 'spa', 'SpUn1204_0010' => 'spa', 'TAR365G0908' => 'tar', 'TAR381G1270' => 'tar', 'TAR381G1651' => 'tar', 'TAR625G1131' => 'tar', 'TAR633G0962' => 'tar', 'TAR633G1729' => 'tar', 'TAR633G1864' => 'tar', 'TAR636G0221' => 'tar', 'TAR636G0314' => 'tar', 'TAR636G3202' => 'tar', 'THA.LOC104800805' => 'tha', 'THA.LOC104801096' => 'tha', 'THA.LOC104801555' => 'tha', 'THA.LOC104808491' => 'tha', 'THA.LOC104808595' => 'tha', 'THA.LOC104815985' => 'tha', 'THA.LOC104822250' => 'tha', 'THA.LOC104826071' => 'tha', 'Thecc.01G265200' => 'tca', 'Thecc.01G265300' => 'tca', 'Thecc.01G265700' => 'tca', 'Thecc.03G109100' => 'tca', 'Thecc.04G245900' => 'tca', 'Thecc.04G246000' => 'tca', 'Thhalv10003334m.g' => 'esa', 'Thhalv10005508m.g' => 'esa', 'Thhalv10005643m.g' => 'esa', 'Thhalv10007316m.g' => 'esa', 'Thhalv10009006m.g' => 'esa', 'Thhalv10009309m.g' => 'esa', 'Thhalv10014917m.g' => 'esa', 'Thhalv10014919m.g' => 'esa', 'Thhalv10015393m.g' => 'esa', 'Thhalv10016515m.g' => 'esa', 'Thhalv10029242m.g' => 'esa', 'TPR.G16654' => 'tpr', 'TPR.G20589' => 'tpr', 'TPR.G23029' => 'tpr', 'TPR.G27731' => 'tpr', 'TPR.G28889' => 'tpr', 'TPR.G28899' => 'tpr', 'TPR.G30846' => 'tpr', 'TPR.G5452' => 'tpr', 'TPR.G5713' => 'tpr', 'TPR.G9046' => 'tpr', 'TPR.G9061' => 'tpr', 'TWI09G1075' => 'twi', 'TWI12G0806' => 'twi', 'TWI18G0108' => 'twi', 'TWI53G1361' => 'twi', 'TWI73G0185' => 'twi', 'TWI73G0427' => 'twi', 'unitig_37.g12001' => 'ugi', 'unitig_747.g21660' => 'ugi', 'unitig_748.g7232' => 'ugi', 'unitig_748.g7315' => 'ugi', 'unitig_85.g27262' => 'ugi', 'unitig_92.g28220' => 'ugi', 'vmacro02632' => 'vma', 'vmacro08410' => 'vma', 'vmacro08411' => 'vma', 'vmacro15407' => 'vma', 'VMungo0251G3619' => 'vmu', 'VMungo0720G1204' => 'vmu', 'VMungo0720G1918' => 'vmu', 'VMungo0720G2387' => 'vmu', 'VMungo0720G2961' => 'vmu', 'VMungo1215G2154' => 'vmu', 'VMungo1383G2411' => 'vmu', 'Zm00001eb051130' => 'zma', 'Zm00001eb116830' => 'zma', 'Zm00001eb116850' => 'zma', 'Zm00001eb151740' => 'zma', 'Zm00001eb292360' => 'zma', 'Zm00001eb301640' => 'zma' ) $gf_id = 'HOM05D000856' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000856' ) $data_identifier = 'HOM05D000856' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 13, 'ath' => (int) 10, 'atr' => (int) 1, 'acertr' => (int) 8, 'cqu' => (int) 6, 'bca' => (int) 21, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 11, 'car' => (int) 9, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 8, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 5, 'fan' => (int) 16, 'fve' => (int) 6, 'gma' => (int) 11, 'ghi' => (int) 19, 'gra' => (int) 9, 'vvi' => (int) 7, 'han' => (int) 17, 'cav' => (int) 5, 'hma' => (int) 2, 'vpl' => (int) 2, 'sun' => (int) 7, 'lal' => (int) 9, 'lja' => (int) 5, 'lonja' => (int) 9, 'lsa' => (int) 5, 'mes' => (int) 8, 'mpo' => (int) 3, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 10, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 15, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 9, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 9, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 6, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 5, 'spa' => (int) 10, 'tar' => (int) 10, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 11, 'tpr' => (int) 11, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 4, 'vmu' => (int) 7, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb301640' $species_info = array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ) $local_species = 'shi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000856', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p00010' => 'bna', 'A03p04160' => 'bna', 'A03p17160' => 'bna', 'A04p23370' => 'bna', 'A05p14860' => 'bna', 'A08p37020' => 'bna', 'A09p08050' => 'bna', 'A09p66800' => 'bna', 'A09p67940' => 'bna', 'A10p02680' => 'bna', 'A10p05320' => 'bna', 'Aa31LG1G20560' => 'aar', 'Aa31LG1G20610' => 'aar', 'Aa31LG1G7810' => 'aar', 'Aa31LG5G3590' => 'aar', 'Aa31LG5G6140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3819' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4683' => 'aag', 'Actinidia04480' => 'ach', 'Actinidia05466' => 'ach', 'Actinidia08445' => 'ach', 'Actinidia21170' => 'ach', 'Actinidia24812' => 'ach', 'Actinidia24951' => 'ach', 'Actinidia40088' => 'ach', 'Ah.02g111660' => 'amhyb', 'Ah.11g048900' => 'amhyb', 'Ah.11g049910' => 'amhyb', 'AL1G13870' => 'aly', 'AL1G13880' => 'aly', 'AL1G16760' => 'aly', 'AL390U10020' => 'aly', 'AL4G25520' => 'aly', 'AL6G19890' => 'aly', 'AL6G19900' => 'aly', 'AL6G19910' => 'aly', 'AL8G40100' => 'aly', 'Aqoxy2G03562' => 'aox', 'Aqoxy5G00316' => 'aox', 'Aqoxy5G00926' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1628KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1H403S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2FU6SJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.882I6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8YRY2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YN1SN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AF70II' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZA8L1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F916KL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHRD8H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KTZ8QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S22EMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8M29T' => 'arhy', 'AT1G04270' => 'ath', 'AT1G04280' => 'ath', 'AT1G06750' => 'ath', 'AT1G33850' => 'ath', 'AT2G30630' => 'ath', 'AT5G09490' => 'ath', 'AT5G09500' => 'ath', 'AT5G09510' => 'ath', 'AT5G43640' => 'ath', 'AT5G63070' => 'ath', 'ATR0605G315' => 'atr', 'Atru.chr11.175' => 'acertr', 'Atru.chr11.653' => 'acertr', 'Atru.chr3.1616' => 'acertr', 'Atru.chr4.2230' => 'acertr', 'Atru.chr4.2232' => 'acertr', 'Atru.chr5.1598' => 'acertr', 'Atru.chr5.1600' => 'acertr', 'Atru.chr5.2188' => 'acertr', 'AUR62008326' => 'cqu', 'AUR62011922' => 'cqu', 'AUR62011924' => 'cqu', 'AUR62021771' => 'cqu', 'AUR62032237' => 'cqu', 'AUR62032240' => 'cqu', 'BcaB01g05572' => 'bca', 'BcaB02g10337' => 'bca', 'BcaB04g19944' => 'bca', 'BcaB05g21548' => 'bca', 'BcaB05g21549' => 'bca', 'BcaB05g23227' => 'bca', 'BcaB06g26256' => 'bca', 'BcaB06g26257' => 'bca', 'BcaB06g28379' => 'bca', 'BcaC02g11159' => 'bca', 'BcaC03g13258' => 'bca', 'BcaC03g13259' => 'bca', 'BcaC05g24456' => 'bca', 'BcaC05g24457' => 'bca', 'BcaC07g36922' => 'bca', 'BcaC07g36923' => 'bca', 'BcaC07g42050' => 'bca', 'BcaC07g42176' => 'bca', 'BcaC07g42195' => 'bca', 'BcaC07g42196' => 'bca', 'BcaNung06674' => 'bca', 'BolC2t06351H' => 'bol', 'BolC2t06352H' => 'bol', 'BolC3t12993H' => 'bol', 'BolC4t23525H' => 'bol', 'BolC4t27475H' => 'bol', 'BolC5t29025H' => 'bol', 'BolC5t29026H' => 'bol', 'BolC8t46898H' => 'bol', 'BolC8t46899H' => 'bol', 'BolC8t52630H' => 'bol', 'BolC8t52765H' => 'bol', 'BolC9t53824H' => 'bol', 'BraA03t09760Z' => 'bra', 'BraA03t10990Z' => 'bra', 'BraA05t20413Z' => 'bra', 'BraA08t35602Z' => 'bra', 'BraA09t36458Z' => 'bra', 'BraA09t42018Z' => 'bra', 'BraA09t42129Z' => 'bra', 'BraA10t42536Z' => 'bra', 'BraA10t42537Z' => 'bra', 'C01p10690' => 'bna', 'C02p03890' => 'bna', 'C02p03900' => 'bna', 'C03p04620' => 'bna', 'C04p19870' => 'bna', 'C04p59670' => 'bna', 'C05p02460' => 'bna', 'C05p02470' => 'bna', 'C08p00980' => 'bna', 'C08p00990' => 'bna', 'C08p51030' => 'bna', 'C08p52360' => 'bna', 'C09p09120' => 'bna', 'CAN.G19.15' => 'can', 'CAN.G251.10' => 'can', 'CAN.G251.9' => 'can', 'CAN.G398.24' => 'can', 'CAN.G410.32' => 'can', 'CAN.G881.2' => 'can', 'CANSAT01G3025' => 'cansat', 'CANSAT78G1211' => 'cansat', 'CANSAT78G1218' => 'cansat', 'CANSAT78G1521' => 'cansat', 'CANSAT78G1670' => 'cansat', 'CARHR003600' => 'chi', 'CARHR003610' => 'chi', 'CARHR006290' => 'chi', 'CARHR006430' => 'chi', 'CARHR124110' => 'chi', 'CARHR203870' => 'chi', 'CARHR203880' => 'chi', 'CARHR203890' => 'chi', 'CARHR276880' => 'chi', 'Carub.0001s0346' => 'cru', 'Carub.0001s0347' => 'cru', 'Carub.0001s0607' => 'cru', 'Carub.0003s2768' => 'cru', 'Carub.0003s2769' => 'cru', 'Carub.0004s1178' => 'cru', 'Carub.0006s0806' => 'cru', 'Carub.0006s0807' => 'cru', 'Carub.0006s0808' => 'cru', 'Carub.0008s0501' => 'cru', 'Carub.0008s2379' => 'cru', 'Ca_08655_v3' => 'car', 'Ca_08922_v3' => 'car', 'Ca_08923_v3' => 'car', 'Ca_09119_v3' => 'car', 'Ca_09703_v3' => 'car', 'Ca_09705_v3' => 'car', 'Ca_09835_v3' => 'car', 'Ca_26403_v3' => 'car', 'Ca_30719_v3' => 'car', 'CBR_g17958' => 'cbr', 'CBR_g40516' => 'cbr', 'Cc00_g05350' => 'ccan', 'Cc01_g18690' => 'ccan', 'Cc03_g04830' => 'ccan', 'Cc03_g04850' => 'ccan', 'CDE02G4469' => 'cde', 'CDE06G0883' => 'cde', 'CDE06G1295' => 'cde', 'CDE06G1390' => 'cde', 'CDE07G0584' => 'cde', 'CDE07G1084' => 'cde', 'CDE08G1259' => 'cde', 'Cfa002341' => 'cfa', 'Cfa024337' => 'cfa', 'Ciclev10004749m.g' => 'ccl', 'Ciclev10006127m.g' => 'ccl', 'Ciclev10019720m.g' => 'ccl', 'Ciclev10022652m.g' => 'ccl', 'CiPaw.01G190400' => 'cil', 'CiPaw.01G190500' => 'cil', 'CiPaw.02G116400' => 'cil', 'CiPaw.02G116500' => 'cil', 'CiPaw.04G183000' => 'cil', 'CiPaw.04G183300' => 'cil', 'ClCG05G004610' => 'cla', 'ClCG05G004620' => 'cla', 'ClCG06G006730' => 'cla', 'ClCG06G006740' => 'cla', 'ClCG11G003690' => 'cla', 'COL.COLO4_08276' => 'col', 'COL.COLO4_08277' => 'col', 'COL.COLO4_15787' => 'col', 'COL.COLO4_15789' => 'col', 'Cpa.g.c44815' => 'cpa', 'Cpa.g.sc52.144' => 'cpa', 'Cpa.g.sc58.46' => 'cpa', 'Cpa.g.sc58.47' => 'cpa', 'Cre08.g360900' => 'cre', 'CsaV3_2G013030' => 'csa', 'CsaV3_2G013050' => 'csa', 'CsaV3_2G015620' => 'csa', 'CsaV3_3G012590' => 'csa', 'CsaV3_3G012600' => 'csa', 'CSS0001641' => 'camsi', 'CSS0008310' => 'camsi', 'CSS0013011' => 'camsi', 'CSS0017147' => 'camsi', 'CSS0022970' => 'camsi', 'CSS0025655' => 'camsi', 'CSS0028665' => 'camsi', 'CSS0029117' => 'camsi', 'CSS0032024' => 'camsi', 'CSS0039681' => 'camsi', 'CSS0046516' => 'camsi', 'CSS0050307' => 'camsi', 'DCAR_005871' => 'dca', 'DCAR_007342' => 'dca', 'DCAR_024228' => 'dca', 'DCAR_027277' => 'dca', 'DCAR_030718' => 'dca', 'Dinv20287' => 'din', 'Dinv22461' => 'din', 'Dinv22464' => 'din', 'Dinv29912' => 'din', 'Dinv29913' => 'din', 'Dinv34580' => 'din', 'Dinv34582' => 'din', 'Dinv44632' => 'din', 'Duzib052G0266' => 'dzi', 'Duzib133G0907' => 'dzi', 'Duzib133G1034' => 'dzi', 'Duzib138G0207' => 'dzi', 'Duzib138G0491' => 'dzi', 'Duzib151G0812' => 'dzi', 'Duzib151G1166' => 'dzi', 'Duzib168G0192' => 'dzi', 'Duzib211G0077' => 'dzi', 'Duzib212G0429' => 'dzi', 'Duzib212G0472' => 'dzi', 'ECA233G2617' => 'eca', 'ECA236G4188' => 'eca', 'ECA240G0936' => 'eca', 'ECA240G1129' => 'eca', 'ECA247G0623' => 'eca', 'EL10Ac5g10451' => 'bvu', 'EL10Ac5g10453' => 'bvu', 'EL10Ac5g10894' => 'bvu', 'Eucgr.H00192' => 'egr', 'Eucgr.H00193' => 'egr', 'Eucgr.H00194' => 'egr', 'Eucgr.J01562' => 'egr', 'Eucgr.K03301' => 'egr', 'FAN02G0632' => 'fan', 'FAN05G5378' => 'fan', 'FAN09G3247' => 'fan', 'FAN12G0435' => 'fan', 'FAN12G2426' => 'fan', 'FAN14G1707' => 'fan', 'FAN14G4725' => 'fan', 'FAN15G2071' => 'fan', 'FAN17G3065' => 'fan', 'FAN19G1376' => 'fan', 'FAN20G0354' => 'fan', 'FAN20G2429' => 'fan', 'FAN20G2658' => 'fan', 'FAN24G2343' => 'fan', 'FAN27G2362' => 'fan', 'FAN28G1765' => 'fan', 'FvH4_1g16020' => 'fve', 'FvH4_2g04890' => 'fve', 'FvH4_2g22270' => 'fve', 'FvH4_4g02630' => 'fve', 'FvH4_4g02640' => 'fve', 'FvH4_6g02650' => 'fve', 'Glyma.02G140600' => 'gma', 'Glyma.03G159900' => 'gma', 'Glyma.05G234800' => 'gma', 'Glyma.07G269600' => 'gma', 'Glyma.08G042300' => 'gma', 'Glyma.10G033500' => 'gma', 'Glyma.10G185200' => 'gma', 'Glyma.17G004300' => 'gma', 'Glyma.19G161900' => 'gma', 'Glyma.20G205100' => 'gma', 'Glyma.20G205200' => 'gma', 'Gohir.A01G139101' => 'ghi', 'Gohir.A02G035600' => 'ghi', 'Gohir.A02G117901' => 'ghi', 'Gohir.A07G210100' => 'ghi', 'Gohir.A07G210200' => 'ghi', 'Gohir.A08G061100' => 'ghi', 'Gohir.A09G223000' => 'ghi', 'Gohir.A09G223100' => 'ghi', 'Gohir.A10G113900' => 'ghi', 'Gohir.A10G114000' => 'ghi', 'Gohir.D02G042300' => 'ghi', 'Gohir.D07G216100' => 'ghi', 'Gohir.D07G216200' => 'ghi', 'Gohir.D08G070400' => 'ghi', 'Gohir.D09G225000' => 'ghi', 'Gohir.D09G225100' => 'ghi', 'Gohir.D10G152300' => 'ghi', 'Gohir.D10G153200' => 'ghi', 'Gohir.D11G133701' => 'ghi', 'Gorai.004G074100' => 'gra', 'Gorai.005G046800' => 'gra', 'Gorai.006G246500' => 'gra', 'Gorai.006G246600' => 'gra', 'Gorai.007G142900' => 'gra', 'Gorai.011G171000' => 'gra', 'Gorai.011G171100' => 'gra', 'Gorai.013G104300' => 'gra', 'Gorai.013G104400' => 'gra', 'GSVIVG01000754001' => 'vvi', 'GSVIVG01000756001' => 'vvi', 'GSVIVG01010903001' => 'vvi', 'GSVIVG01017623001' => 'vvi', 'GSVIVG01018113001' => 'vvi', 'GSVIVG01018116001' => 'vvi', 'GSVIVG01018118001' => 'vvi', 'HanXRQChr03g0076211' => 'han', 'HanXRQChr03g0092431' => 'han', 'HanXRQChr03g0092441' => 'han', 'HanXRQChr03g0092591' => 'han', 'HanXRQChr03g0092671' => 'han', 'HanXRQChr03g0092681' => 'han', 'HanXRQChr03g0092691' => 'han', 'HanXRQChr03g0092701' => 'han', 'HanXRQChr03g0092721' => 'han', 'HanXRQChr03g0092731' => 'han', 'HanXRQChr04g0113681' => 'han', 'HanXRQChr10g0281371' => 'han', 'HanXRQChr11g0337141' => 'han', 'HanXRQChr13g0424521' => 'han', 'HanXRQChr13g0424531' => 'han', 'HanXRQChr13g0424541' => 'han', 'HanXRQChr16g0498221' => 'han', 'Haze_04377' => 'cav', 'Haze_11298' => 'cav', 'Haze_24547' => 'cav', 'Haze_24550' => 'cav', 'Haze_26587' => 'cav', 'Hma1.2p1_0650F.1_g195410' => 'hma', 'Hma1.2p1_0893F.1_g233470' => 'hma', 'HPP92_006508' => 'vpl', 'HPP92_024780' => 'vpl', 'Hund02688' => 'sun', 'Hund09380' => 'sun', 'Hund09381' => 'sun', 'Hund09832' => 'sun', 'Hund09833' => 'sun', 'Hund11351' => 'sun', 'Hund11513' => 'sun', 'Lalb_Chr06g0162591' => 'lal', 'Lalb_Chr06g0162601' => 'lal', 'Lalb_Chr06g0169321' => 'lal', 'Lalb_Chr09g0330951' => 'lal', 'Lalb_Chr16g0387631' => 'lal', 'Lalb_Chr21g0306241' => 'lal', 'Lalb_Chr25g0290051' => 'lal', 'Lalb_Chr25g0290061' => 'lal', 'Lalb_Chr25g0290071' => 'lal', 'Lj1g0003876' => 'lja', 'Lj1P1207T36' => 'lonja', 'Lj2C1156G12' => 'lonja', 'Lj3A793G39' => 'lonja', 'Lj3C580G2' => 'lonja', 'Lj3C780G2' => 'lonja', 'Lj3C780T4' => 'lonja', 'Lj3C793G9' => 'lonja', 'Lj4g0012960' => 'lja', 'Lj5g0021252' => 'lja', 'Lj5g0021484' => 'lja', 'Lj5g0024528' => 'lja', 'Lj6A399T12' => 'lonja', 'Lj6A656G65' => 'lonja', 'Lsat_1_v5_gn_3_125500' => 'lsa', 'Lsat_1_v5_gn_3_125540' => 'lsa', 'Lsat_1_v5_gn_5_72701' => 'lsa', 'Lsat_1_v5_gn_8_91560' => 'lsa', 'Lsat_1_v5_gn_9_9640' => 'lsa', 'Manes.01G200600' => 'mes', 'Manes.01G200700' => 'mes', 'Manes.03G168900' => 'mes', 'Manes.03G169000' => 'mes', 'Manes.05G085801' => 'mes', 'Manes.05G086200' => 'mes', 'Manes.15G036700' => 'mes', 'Manes.15G036900' => 'mes', 'Mapoly0004s0172' => 'mpo', 'Mapoly0023s0001' => 'mpo', 'Mapoly0142s0012' => 'mpo', 'MBI01_g32854_MAGBIO' => 'mbi', 'MBI11_g24427_MAGBIO' => 'mbi', 'MBI11_g47319_MAGBIO' => 'mbi', 'MCO01G433' => 'mco', 'MD00G1187800' => 'mdo', 'MD04G1226500' => 'mdo', 'MD05G1203900' => 'mdo', 'MD10G1191100' => 'mdo', 'MD12G1243500' => 'mdo', 'MD13G1207000' => 'mdo', 'MD13G1207100' => 'mdo', 'MD16G1208600' => 'mdo', 'Medtr1g050352' => 'mtr', 'Medtr1g070385' => 'mtr', 'Medtr1g070450' => 'mtr', 'Medtr1g075200' => 'mtr', 'Medtr1g075250' => 'mtr', 'Medtr1g075260' => 'mtr', 'Medtr1g475250' => 'mtr', 'Medtr4g075450' => 'mtr', 'Medtr7g096300' => 'mtr', 'Medtr8g105110' => 'mtr', 'MELO3C006470.2' => 'cme', 'MELO3C006471.2' => 'cme', 'MELO3C020772.2' => 'cme', 'MELO3C026780.2' => 'cme', 'MELO3C026781.2' => 'cme', 'Migut.D00390' => 'egut', 'Migut.G00435' => 'egut', 'Migut.G00436' => 'egut', 'Migut.G00718' => 'egut', 'MSTRG.21891' => 'ama', 'MSTRG.26910' => 'ama', 'MSTRG.4099' => 'ama', 'MSTRG.9925' => 'ama', 'Nitab4.5_0000165g0010' => 'nta', 'Nitab4.5_0000209g0180' => 'nta', 'Nitab4.5_0000244g0440' => 'nta', 'Nitab4.5_0000525g0220' => 'nta', 'Nitab4.5_0001597g0020' => 'nta', 'Nitab4.5_0001878g0040' => 'nta', 'Nitab4.5_0001878g0060' => 'nta', 'Nitab4.5_0002838g0100' => 'nta', 'Nitab4.5_0002838g0120' => 'nta', 'Nitab4.5_0004798g0030' => 'nta', 'Nitab4.5_0005420g0010' => 'nta', 'Nitab4.5_0005507g0010' => 'nta', 'Nitab4.5_0005574g0020' => 'nta', 'Nitab4.5_0005838g0010' => 'nta', 'Nitab4.5_0010580g0020' => 'nta', 'Nn1g02599' => 'nnu', 'Nn1g02608' => 'nnu', 'Nn3g17742' => 'nnu', 'Nn3g19534' => 'nnu', 'Nn3g19535' => 'nnu', 'Oeu008790.1' => 'oeu', 'Oeu008792.1' => 'oeu', 'Oeu032590.1' => 'oeu', 'Oeu035349.1' => 'oeu', 'Oeu049791.1' => 'oeu', 'Os01g0774500' => 'osa', 'Os03g0628800' => 'osa', 'Os03g0798600' => 'osa', 'Os05g0508800' => 'osa', 'Peaxi162Scf00036g02018' => 'pax', 'Peaxi162Scf00578g00032' => 'pax', 'Peaxi162Scf00578g00317' => 'pax', 'Peaxi162Scf00785g00114' => 'pax', 'Peaxi162Scf00813g00119' => 'pax', 'Peaxi162Scf00906g00227' => 'pax', 'PGR004G0875' => 'pgr', 'PGR004G2424' => 'pgr', 'PGR031G1239' => 'pgr', 'PGR031G2474' => 'pgr', 'PGR044G0423' => 'pgr', 'PGSC0003DMG400001128' => 'stu', 'PGSC0003DMG400007336' => 'stu', 'PGSC0003DMG400016318' => 'stu', 'PGSC0003DMG400016319' => 'stu', 'PGSC0003DMG400018074' => 'stu', 'Phvul.001G157700' => 'pvu', 'Phvul.002G148550' => 'pvu', 'Phvul.002G320200' => 'pvu', 'Phvul.003G089200' => 'pvu', 'Phvul.007G126000' => 'pvu', 'Phvul.007G126100' => 'pvu', 'Phvul.007G178000' => 'pvu', 'Phvul.007G178200' => 'pvu', 'Potri.002G043000' => 'ptr', 'Potri.002G043200' => 'ptr', 'Potri.003G123750' => 'ptr', 'Potri.005G055401' => 'ptr', 'Potri.005G219700' => 'ptr', 'Potri.005G220000' => 'ptr', 'Potri.008G161901' => 'ptr', 'Potri.008G162000' => 'ptr', 'Potri.008G162400' => 'ptr', 'Potri.010G076900' => 'ptr', 'Pp3c12_9180' => 'ppa', 'Pp3c13_19770' => 'ppa', 'Pp3c14_22950' => 'ppa', 'Pp3c16_12160' => 'ppa', 'Pp3c27_7820' => 'ppa', 'Pp3c2_3490' => 'ppa', 'Pp3c3_23700' => 'ppa', 'Pp3c3_36520' => 'ppa', 'Pp3c4_15250' => 'ppa', 'PRCOL_00007002' => 'pco', 'Prupe.1G030600' => 'ppe', 'Prupe.1G030700' => 'ppe', 'Prupe.6G345200' => 'ppe', 'Prupe.8G230300' => 'ppe', 'Prupe.8G230500' => 'ppe', 'Psat3g059600' => 'psa', 'Psat5g200920' => 'psa', 'Psat6g056440' => 'psa', 'Psat6g057360' => 'psa', 'Psat6g134120' => 'psa', 'Psat6g134160' => 'psa', 'Psat7g008640' => 'psa', 'Psat7g185240' => 'psa', 'PSO017G1330' => 'pso', 'PSO063G6097' => 'pso', 'PSO170G0835' => 'pso', 'PSO170G2499' => 'pso', 'PSO210G5058' => 'pso', 'PSO210G6154' => 'pso', 'PSO585G0031' => 'pso', 'PSO832G0264' => 'pso', 'PSO832G4288' => 'pso', 'QL03p027355' => 'qlo', 'QL03p027430' => 'qlo', 'QL04p081380' => 'qlo', 'QL06p015642' => 'qlo', 'QL06p015650' => 'qlo', 'QL06p015686' => 'qlo', 'QL12p042927' => 'qlo', 'QL93p1863_0035' => 'qlo', 'RcHm_v2.0_Chr3g0450581' => 'rch', 'RcHm_v2.0_Chr4g0390371' => 'rch', 'RcHm_v2.0_Chr4g0390381' => 'rch', 'RcHm_v2.0_Chr4g0390491' => 'rch', 'RcHm_v2.0_Chr4g0390501' => 'rch', 'RcHm_v2.0_Chr6g0289231' => 'rch', 'Rhsim04G0190400' => 'rsi', 'Rhsim04G0190500' => 'rsi', 'Rhsim04G0190600' => 'rsi', 'Rhsim13G0031400' => 'rsi', 'Rhsim13G0165600' => 'rsi', 'RhsimUnG0114600' => 'rsi', 'RhsimUnG0114700' => 'rsi', 'Sabra02G0034800' => 'sbr', 'Sabra02G0035100' => 'sbr', 'Sabra05G0168600' => 'sbr', 'Sabra05G0168800' => 'sbr', 'Sabra08G0123700' => 'sbr', 'Sabra10G0031900' => 'sbr', 'Sabra13G0039000' => 'sbr', 'SalBow2G0782' => 'sbo', 'SalBow2G1403' => 'sbo', 'SalBow4G0074' => 'sbo', 'SalBow4G2635' => 'sbo', 'SalBow5G3010' => 'sbo', 'Sc05g0000870' => 'sci', 'Sc05g0000890' => 'sci', 'Sc13g0005000' => 'sci', 'Sc13g0005030' => 'sci', 'Sc19g0003790' => 'sci', 'Sc19g0003800' => 'sci', 'Sed0003467' => 'sed', 'Sed0009355' => 'sed', 'Sed0009894' => 'sed', 'Sed0011972' => 'sed', 'Sed0021483' => 'sed', 'Sed0021750' => 'sed', 'Sed0026279' => 'sed', 'SEGI_05312' => 'sgi', 'SEGI_10112' => 'sgi', 'SEGI_15835' => 'sgi', 'SEGI_30386' => 'sgi', 'SEGI_34122' => 'sgi', 'SEGI_35063' => 'sgi', 'SGA_v2.0_scaffold101G29794' => 'sas', 'SGA_v2.0_scaffold1G00573' => 'sas', 'SGA_v2.0_scaffold79G25637' => 'sas', 'SGA_v2.0_scaffold88G27283' => 'sas', 'SGA_v2.0_scaffold88G27285' => 'sas', 'SGA_v2.0_scaffold88G27331' => 'sas', 'SHI09937' => 'shi', 'SMO119G0302' => 'smo', 'SMO137G0231' => 'smo', 'SMO367G1151' => 'smo', 'Solyc02g082000.3' => 'sly', 'Solyc06g031670.3' => 'sly', 'Solyc06g053810.3' => 'sly', 'Solyc07g025457.1' => 'sly', 'Solyc08g059740.1' => 'sly', 'Solyc08g059750.3' => 'sly', 'Solyc09g083370.3' => 'sly', 'Solyc12g038950.3' => 'sly', 'Sopen02g026630' => 'spe', 'Sopen06g018930' => 'spe', 'Sopen06g018940' => 'spe', 'Sopen08g009460' => 'spe', 'Sopen09g032290' => 'spe', 'Sp1g03080' => 'spa', 'Sp1g03090' => 'spa', 'Sp1g05480' => 'spa', 'Sp2g07860' => 'spa', 'Sp2g08430' => 'spa', 'Sp2g08440' => 'spa', 'Sp2g26200' => 'spa', 'Sp4g13170' => 'spa', 'Sp6g33840' => 'spa', 'SpUn1204_0010' => 'spa', 'TAR365G0908' => 'tar', 'TAR381G1270' => 'tar', 'TAR381G1651' => 'tar', 'TAR625G1131' => 'tar', 'TAR633G0962' => 'tar', 'TAR633G1729' => 'tar', 'TAR633G1864' => 'tar', 'TAR636G0221' => 'tar', 'TAR636G0314' => 'tar', 'TAR636G3202' => 'tar', 'THA.LOC104800805' => 'tha', 'THA.LOC104801096' => 'tha', 'THA.LOC104801555' => 'tha', 'THA.LOC104808491' => 'tha', 'THA.LOC104808595' => 'tha', 'THA.LOC104815985' => 'tha', 'THA.LOC104822250' => 'tha', 'THA.LOC104826071' => 'tha', 'Thecc.01G265200' => 'tca', 'Thecc.01G265300' => 'tca', 'Thecc.01G265700' => 'tca', 'Thecc.03G109100' => 'tca', 'Thecc.04G245900' => 'tca', 'Thecc.04G246000' => 'tca', 'Thhalv10003334m.g' => 'esa', 'Thhalv10005508m.g' => 'esa', 'Thhalv10005643m.g' => 'esa', 'Thhalv10007316m.g' => 'esa', 'Thhalv10009006m.g' => 'esa', 'Thhalv10009309m.g' => 'esa', 'Thhalv10014917m.g' => 'esa', 'Thhalv10014919m.g' => 'esa', 'Thhalv10015393m.g' => 'esa', 'Thhalv10016515m.g' => 'esa', 'Thhalv10029242m.g' => 'esa', 'TPR.G16654' => 'tpr', 'TPR.G20589' => 'tpr', 'TPR.G23029' => 'tpr', 'TPR.G27731' => 'tpr', 'TPR.G28889' => 'tpr', 'TPR.G28899' => 'tpr', 'TPR.G30846' => 'tpr', 'TPR.G5452' => 'tpr', 'TPR.G5713' => 'tpr', 'TPR.G9046' => 'tpr', 'TPR.G9061' => 'tpr', 'TWI09G1075' => 'twi', 'TWI12G0806' => 'twi', 'TWI18G0108' => 'twi', 'TWI53G1361' => 'twi', 'TWI73G0185' => 'twi', 'TWI73G0427' => 'twi', 'unitig_37.g12001' => 'ugi', 'unitig_747.g21660' => 'ugi', 'unitig_748.g7232' => 'ugi', 'unitig_748.g7315' => 'ugi', 'unitig_85.g27262' => 'ugi', 'unitig_92.g28220' => 'ugi', 'vmacro02632' => 'vma', 'vmacro08410' => 'vma', 'vmacro08411' => 'vma', 'vmacro15407' => 'vma', 'VMungo0251G3619' => 'vmu', 'VMungo0720G1204' => 'vmu', 'VMungo0720G1918' => 'vmu', 'VMungo0720G2387' => 'vmu', 'VMungo0720G2961' => 'vmu', 'VMungo1215G2154' => 'vmu', 'VMungo1383G2411' => 'vmu', 'Zm00001eb051130' => 'zma', 'Zm00001eb116830' => 'zma', 'Zm00001eb116850' => 'zma', 'Zm00001eb151740' => 'zma', 'Zm00001eb292360' => 'zma', 'Zm00001eb301640' => 'zma' ), 'gf_id' => 'HOM05D000856', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000856' ), 'data_identifier' => 'HOM05D000856', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000856', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p00010' => 'bna', 'A03p04160' => 'bna', 'A03p17160' => 'bna', 'A04p23370' => 'bna', 'A05p14860' => 'bna', 'A08p37020' => 'bna', 'A09p08050' => 'bna', 'A09p66800' => 'bna', 'A09p67940' => 'bna', 'A10p02680' => 'bna', 'A10p05320' => 'bna', 'Aa31LG1G20560' => 'aar', 'Aa31LG1G20610' => 'aar', 'Aa31LG1G7810' => 'aar', 'Aa31LG5G3590' => 'aar', 'Aa31LG5G6140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3819' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4683' => 'aag', 'Actinidia04480' => 'ach', 'Actinidia05466' => 'ach', 'Actinidia08445' => 'ach', 'Actinidia21170' => 'ach', 'Actinidia24812' => 'ach', 'Actinidia24951' => 'ach', 'Actinidia40088' => 'ach', 'Ah.02g111660' => 'amhyb', 'Ah.11g048900' => 'amhyb', 'Ah.11g049910' => 'amhyb', 'AL1G13870' => 'aly', 'AL1G13880' => 'aly', 'AL1G16760' => 'aly', 'AL390U10020' => 'aly', 'AL4G25520' => 'aly', 'AL6G19890' => 'aly', 'AL6G19900' => 'aly', 'AL6G19910' => 'aly', 'AL8G40100' => 'aly', 'Aqoxy2G03562' => 'aox', 'Aqoxy5G00316' => 'aox', 'Aqoxy5G00926' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1628KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1H403S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2FU6SJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.882I6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8YRY2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YN1SN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AF70II' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZA8L1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F916KL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHRD8H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KTZ8QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S22EMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8M29T' => 'arhy', 'AT1G04270' => 'ath', 'AT1G04280' => 'ath', 'AT1G06750' => 'ath', 'AT1G33850' => 'ath', 'AT2G30630' => 'ath', 'AT5G09490' => 'ath', 'AT5G09500' => 'ath', 'AT5G09510' => 'ath', 'AT5G43640' => 'ath', 'AT5G63070' => 'ath', 'ATR0605G315' => 'atr', 'Atru.chr11.175' => 'acertr', 'Atru.chr11.653' => 'acertr', 'Atru.chr3.1616' => 'acertr', 'Atru.chr4.2230' => 'acertr', 'Atru.chr4.2232' => 'acertr', 'Atru.chr5.1598' => 'acertr', 'Atru.chr5.1600' => 'acertr', 'Atru.chr5.2188' => 'acertr', 'AUR62008326' => 'cqu', 'AUR62011922' => 'cqu', 'AUR62011924' => 'cqu', 'AUR62021771' => 'cqu', 'AUR62032237' => 'cqu', 'AUR62032240' => 'cqu', 'BcaB01g05572' => 'bca', 'BcaB02g10337' => 'bca', 'BcaB04g19944' => 'bca', 'BcaB05g21548' => 'bca', 'BcaB05g21549' => 'bca', 'BcaB05g23227' => 'bca', 'BcaB06g26256' => 'bca', 'BcaB06g26257' => 'bca', 'BcaB06g28379' => 'bca', 'BcaC02g11159' => 'bca', 'BcaC03g13258' => 'bca', 'BcaC03g13259' => 'bca', 'BcaC05g24456' => 'bca', 'BcaC05g24457' => 'bca', 'BcaC07g36922' => 'bca', 'BcaC07g36923' => 'bca', 'BcaC07g42050' => 'bca', 'BcaC07g42176' => 'bca', 'BcaC07g42195' => 'bca', 'BcaC07g42196' => 'bca', 'BcaNung06674' => 'bca', 'BolC2t06351H' => 'bol', 'BolC2t06352H' => 'bol', 'BolC3t12993H' => 'bol', 'BolC4t23525H' => 'bol', 'BolC4t27475H' => 'bol', 'BolC5t29025H' => 'bol', 'BolC5t29026H' => 'bol', 'BolC8t46898H' => 'bol', 'BolC8t46899H' => 'bol', 'BolC8t52630H' => 'bol', 'BolC8t52765H' => 'bol', 'BolC9t53824H' => 'bol', 'BraA03t09760Z' => 'bra', 'BraA03t10990Z' => 'bra', 'BraA05t20413Z' => 'bra', 'BraA08t35602Z' => 'bra', 'BraA09t36458Z' => 'bra', 'BraA09t42018Z' => 'bra', 'BraA09t42129Z' => 'bra', 'BraA10t42536Z' => 'bra', 'BraA10t42537Z' => 'bra', 'C01p10690' => 'bna', 'C02p03890' => 'bna', 'C02p03900' => 'bna', 'C03p04620' => 'bna', 'C04p19870' => 'bna', 'C04p59670' => 'bna', 'C05p02460' => 'bna', 'C05p02470' => 'bna', 'C08p00980' => 'bna', 'C08p00990' => 'bna', 'C08p51030' => 'bna', 'C08p52360' => 'bna', 'C09p09120' => 'bna', 'CAN.G19.15' => 'can', 'CAN.G251.10' => 'can', 'CAN.G251.9' => 'can', 'CAN.G398.24' => 'can', 'CAN.G410.32' => 'can', 'CAN.G881.2' => 'can', 'CANSAT01G3025' => 'cansat', 'CANSAT78G1211' => 'cansat', 'CANSAT78G1218' => 'cansat', 'CANSAT78G1521' => 'cansat', 'CANSAT78G1670' => 'cansat', 'CARHR003600' => 'chi', 'CARHR003610' => 'chi', 'CARHR006290' => 'chi', 'CARHR006430' => 'chi', 'CARHR124110' => 'chi', 'CARHR203870' => 'chi', 'CARHR203880' => 'chi', 'CARHR203890' => 'chi', 'CARHR276880' => 'chi', 'Carub.0001s0346' => 'cru', 'Carub.0001s0347' => 'cru', 'Carub.0001s0607' => 'cru', 'Carub.0003s2768' => 'cru', 'Carub.0003s2769' => 'cru', 'Carub.0004s1178' => 'cru', 'Carub.0006s0806' => 'cru', 'Carub.0006s0807' => 'cru', 'Carub.0006s0808' => 'cru', 'Carub.0008s0501' => 'cru', 'Carub.0008s2379' => 'cru', 'Ca_08655_v3' => 'car', 'Ca_08922_v3' => 'car', 'Ca_08923_v3' => 'car', 'Ca_09119_v3' => 'car', 'Ca_09703_v3' => 'car', 'Ca_09705_v3' => 'car', 'Ca_09835_v3' => 'car', 'Ca_26403_v3' => 'car', 'Ca_30719_v3' => 'car', 'CBR_g17958' => 'cbr', 'CBR_g40516' => 'cbr', 'Cc00_g05350' => 'ccan', 'Cc01_g18690' => 'ccan', 'Cc03_g04830' => 'ccan', 'Cc03_g04850' => 'ccan', 'CDE02G4469' => 'cde', 'CDE06G0883' => 'cde', 'CDE06G1295' => 'cde', 'CDE06G1390' => 'cde', 'CDE07G0584' => 'cde', 'CDE07G1084' => 'cde', 'CDE08G1259' => 'cde', 'Cfa002341' => 'cfa', 'Cfa024337' => 'cfa', 'Ciclev10004749m.g' => 'ccl', 'Ciclev10006127m.g' => 'ccl', 'Ciclev10019720m.g' => 'ccl', 'Ciclev10022652m.g' => 'ccl', 'CiPaw.01G190400' => 'cil', 'CiPaw.01G190500' => 'cil', 'CiPaw.02G116400' => 'cil', 'CiPaw.02G116500' => 'cil', 'CiPaw.04G183000' => 'cil', 'CiPaw.04G183300' => 'cil', 'ClCG05G004610' => 'cla', 'ClCG05G004620' => 'cla', 'ClCG06G006730' => 'cla', 'ClCG06G006740' => 'cla', 'ClCG11G003690' => 'cla', 'COL.COLO4_08276' => 'col', 'COL.COLO4_08277' => 'col', 'COL.COLO4_15787' => 'col', 'COL.COLO4_15789' => 'col', 'Cpa.g.c44815' => 'cpa', 'Cpa.g.sc52.144' => 'cpa', 'Cpa.g.sc58.46' => 'cpa', 'Cpa.g.sc58.47' => 'cpa', 'Cre08.g360900' => 'cre', 'CsaV3_2G013030' => 'csa', 'CsaV3_2G013050' => 'csa', 'CsaV3_2G015620' => 'csa', 'CsaV3_3G012590' => 'csa', 'CsaV3_3G012600' => 'csa', 'CSS0001641' => 'camsi', 'CSS0008310' => 'camsi', 'CSS0013011' => 'camsi', 'CSS0017147' => 'camsi', 'CSS0022970' => 'camsi', 'CSS0025655' => 'camsi', 'CSS0028665' => 'camsi', 'CSS0029117' => 'camsi', 'CSS0032024' => 'camsi', 'CSS0039681' => 'camsi', 'CSS0046516' => 'camsi', 'CSS0050307' => 'camsi', 'DCAR_005871' => 'dca', 'DCAR_007342' => 'dca', 'DCAR_024228' => 'dca', 'DCAR_027277' => 'dca', 'DCAR_030718' => 'dca', 'Dinv20287' => 'din', 'Dinv22461' => 'din', 'Dinv22464' => 'din', 'Dinv29912' => 'din', 'Dinv29913' => 'din', 'Dinv34580' => 'din', 'Dinv34582' => 'din', 'Dinv44632' => 'din', 'Duzib052G0266' => 'dzi', 'Duzib133G0907' => 'dzi', 'Duzib133G1034' => 'dzi', 'Duzib138G0207' => 'dzi', 'Duzib138G0491' => 'dzi', 'Duzib151G0812' => 'dzi', 'Duzib151G1166' => 'dzi', 'Duzib168G0192' => 'dzi', 'Duzib211G0077' => 'dzi', 'Duzib212G0429' => 'dzi', 'Duzib212G0472' => 'dzi', 'ECA233G2617' => 'eca', 'ECA236G4188' => 'eca', 'ECA240G0936' => 'eca', 'ECA240G1129' => 'eca', 'ECA247G0623' => 'eca', 'EL10Ac5g10451' => 'bvu', 'EL10Ac5g10453' => 'bvu', 'EL10Ac5g10894' => 'bvu', 'Eucgr.H00192' => 'egr', 'Eucgr.H00193' => 'egr', 'Eucgr.H00194' => 'egr', 'Eucgr.J01562' => 'egr', 'Eucgr.K03301' => 'egr', 'FAN02G0632' => 'fan', 'FAN05G5378' => 'fan', 'FAN09G3247' => 'fan', 'FAN12G0435' => 'fan', 'FAN12G2426' => 'fan', 'FAN14G1707' => 'fan', 'FAN14G4725' => 'fan', 'FAN15G2071' => 'fan', 'FAN17G3065' => 'fan', 'FAN19G1376' => 'fan', 'FAN20G0354' => 'fan', 'FAN20G2429' => 'fan', 'FAN20G2658' => 'fan', 'FAN24G2343' => 'fan', 'FAN27G2362' => 'fan', 'FAN28G1765' => 'fan', 'FvH4_1g16020' => 'fve', 'FvH4_2g04890' => 'fve', 'FvH4_2g22270' => 'fve', 'FvH4_4g02630' => 'fve', 'FvH4_4g02640' => 'fve', 'FvH4_6g02650' => 'fve', 'Glyma.02G140600' => 'gma', 'Glyma.03G159900' => 'gma', 'Glyma.05G234800' => 'gma', 'Glyma.07G269600' => 'gma', 'Glyma.08G042300' => 'gma', 'Glyma.10G033500' => 'gma', 'Glyma.10G185200' => 'gma', 'Glyma.17G004300' => 'gma', 'Glyma.19G161900' => 'gma', 'Glyma.20G205100' => 'gma', 'Glyma.20G205200' => 'gma', 'Gohir.A01G139101' => 'ghi', 'Gohir.A02G035600' => 'ghi', 'Gohir.A02G117901' => 'ghi', 'Gohir.A07G210100' => 'ghi', 'Gohir.A07G210200' => 'ghi', 'Gohir.A08G061100' => 'ghi', 'Gohir.A09G223000' => 'ghi', 'Gohir.A09G223100' => 'ghi', 'Gohir.A10G113900' => 'ghi', 'Gohir.A10G114000' => 'ghi', 'Gohir.D02G042300' => 'ghi', 'Gohir.D07G216100' => 'ghi', 'Gohir.D07G216200' => 'ghi', 'Gohir.D08G070400' => 'ghi', 'Gohir.D09G225000' => 'ghi', 'Gohir.D09G225100' => 'ghi', 'Gohir.D10G152300' => 'ghi', 'Gohir.D10G153200' => 'ghi', 'Gohir.D11G133701' => 'ghi', 'Gorai.004G074100' => 'gra', 'Gorai.005G046800' => 'gra', 'Gorai.006G246500' => 'gra', 'Gorai.006G246600' => 'gra', 'Gorai.007G142900' => 'gra', 'Gorai.011G171000' => 'gra', 'Gorai.011G171100' => 'gra', 'Gorai.013G104300' => 'gra', 'Gorai.013G104400' => 'gra', 'GSVIVG01000754001' => 'vvi', 'GSVIVG01000756001' => 'vvi', 'GSVIVG01010903001' => 'vvi', 'GSVIVG01017623001' => 'vvi', 'GSVIVG01018113001' => 'vvi', 'GSVIVG01018116001' => 'vvi', 'GSVIVG01018118001' => 'vvi', 'HanXRQChr03g0076211' => 'han', 'HanXRQChr03g0092431' => 'han', 'HanXRQChr03g0092441' => 'han', 'HanXRQChr03g0092591' => 'han', 'HanXRQChr03g0092671' => 'han', 'HanXRQChr03g0092681' => 'han', 'HanXRQChr03g0092691' => 'han', 'HanXRQChr03g0092701' => 'han', 'HanXRQChr03g0092721' => 'han', 'HanXRQChr03g0092731' => 'han', 'HanXRQChr04g0113681' => 'han', 'HanXRQChr10g0281371' => 'han', 'HanXRQChr11g0337141' => 'han', 'HanXRQChr13g0424521' => 'han', 'HanXRQChr13g0424531' => 'han', 'HanXRQChr13g0424541' => 'han', 'HanXRQChr16g0498221' => 'han', 'Haze_04377' => 'cav', 'Haze_11298' => 'cav', 'Haze_24547' => 'cav', 'Haze_24550' => 'cav', 'Haze_26587' => 'cav', 'Hma1.2p1_0650F.1_g195410' => 'hma', 'Hma1.2p1_0893F.1_g233470' => 'hma', 'HPP92_006508' => 'vpl', 'HPP92_024780' => 'vpl', 'Hund02688' => 'sun', 'Hund09380' => 'sun', 'Hund09381' => 'sun', 'Hund09832' => 'sun', 'Hund09833' => 'sun', 'Hund11351' => 'sun', 'Hund11513' => 'sun', 'Lalb_Chr06g0162591' => 'lal', 'Lalb_Chr06g0162601' => 'lal', 'Lalb_Chr06g0169321' => 'lal', 'Lalb_Chr09g0330951' => 'lal', 'Lalb_Chr16g0387631' => 'lal', 'Lalb_Chr21g0306241' => 'lal', 'Lalb_Chr25g0290051' => 'lal', 'Lalb_Chr25g0290061' => 'lal', 'Lalb_Chr25g0290071' => 'lal', 'Lj1g0003876' => 'lja', 'Lj1P1207T36' => 'lonja', 'Lj2C1156G12' => 'lonja', 'Lj3A793G39' => 'lonja', 'Lj3C580G2' => 'lonja', 'Lj3C780G2' => 'lonja', 'Lj3C780T4' => 'lonja', 'Lj3C793G9' => 'lonja', 'Lj4g0012960' => 'lja', 'Lj5g0021252' => 'lja', 'Lj5g0021484' => 'lja', 'Lj5g0024528' => 'lja', 'Lj6A399T12' => 'lonja', 'Lj6A656G65' => 'lonja', 'Lsat_1_v5_gn_3_125500' => 'lsa', 'Lsat_1_v5_gn_3_125540' => 'lsa', 'Lsat_1_v5_gn_5_72701' => 'lsa', 'Lsat_1_v5_gn_8_91560' => 'lsa', 'Lsat_1_v5_gn_9_9640' => 'lsa', 'Manes.01G200600' => 'mes', 'Manes.01G200700' => 'mes', 'Manes.03G168900' => 'mes', 'Manes.03G169000' => 'mes', 'Manes.05G085801' => 'mes', 'Manes.05G086200' => 'mes', 'Manes.15G036700' => 'mes', 'Manes.15G036900' => 'mes', 'Mapoly0004s0172' => 'mpo', 'Mapoly0023s0001' => 'mpo', 'Mapoly0142s0012' => 'mpo', 'MBI01_g32854_MAGBIO' => 'mbi', 'MBI11_g24427_MAGBIO' => 'mbi', 'MBI11_g47319_MAGBIO' => 'mbi', 'MCO01G433' => 'mco', 'MD00G1187800' => 'mdo', 'MD04G1226500' => 'mdo', 'MD05G1203900' => 'mdo', 'MD10G1191100' => 'mdo', 'MD12G1243500' => 'mdo', 'MD13G1207000' => 'mdo', 'MD13G1207100' => 'mdo', 'MD16G1208600' => 'mdo', 'Medtr1g050352' => 'mtr', 'Medtr1g070385' => 'mtr', 'Medtr1g070450' => 'mtr', 'Medtr1g075200' => 'mtr', 'Medtr1g075250' => 'mtr', 'Medtr1g075260' => 'mtr', 'Medtr1g475250' => 'mtr', 'Medtr4g075450' => 'mtr', 'Medtr7g096300' => 'mtr', 'Medtr8g105110' => 'mtr', 'MELO3C006470.2' => 'cme', 'MELO3C006471.2' => 'cme', 'MELO3C020772.2' => 'cme', 'MELO3C026780.2' => 'cme', 'MELO3C026781.2' => 'cme', 'Migut.D00390' => 'egut', 'Migut.G00435' => 'egut', 'Migut.G00436' => 'egut', 'Migut.G00718' => 'egut', 'MSTRG.21891' => 'ama', 'MSTRG.26910' => 'ama', 'MSTRG.4099' => 'ama', 'MSTRG.9925' => 'ama', 'Nitab4.5_0000165g0010' => 'nta', 'Nitab4.5_0000209g0180' => 'nta', 'Nitab4.5_0000244g0440' => 'nta', 'Nitab4.5_0000525g0220' => 'nta', 'Nitab4.5_0001597g0020' => 'nta', 'Nitab4.5_0001878g0040' => 'nta', 'Nitab4.5_0001878g0060' => 'nta', 'Nitab4.5_0002838g0100' => 'nta', 'Nitab4.5_0002838g0120' => 'nta', 'Nitab4.5_0004798g0030' => 'nta', 'Nitab4.5_0005420g0010' => 'nta', 'Nitab4.5_0005507g0010' => 'nta', 'Nitab4.5_0005574g0020' => 'nta', 'Nitab4.5_0005838g0010' => 'nta', 'Nitab4.5_0010580g0020' => 'nta', 'Nn1g02599' => 'nnu', 'Nn1g02608' => 'nnu', 'Nn3g17742' => 'nnu', 'Nn3g19534' => 'nnu', 'Nn3g19535' => 'nnu', 'Oeu008790.1' => 'oeu', 'Oeu008792.1' => 'oeu', 'Oeu032590.1' => 'oeu', 'Oeu035349.1' => 'oeu', 'Oeu049791.1' => 'oeu', 'Os01g0774500' => 'osa', 'Os03g0628800' => 'osa', 'Os03g0798600' => 'osa', 'Os05g0508800' => 'osa', 'Peaxi162Scf00036g02018' => 'pax', 'Peaxi162Scf00578g00032' => 'pax', 'Peaxi162Scf00578g00317' => 'pax', 'Peaxi162Scf00785g00114' => 'pax', 'Peaxi162Scf00813g00119' => 'pax', 'Peaxi162Scf00906g00227' => 'pax', 'PGR004G0875' => 'pgr', 'PGR004G2424' => 'pgr', 'PGR031G1239' => 'pgr', 'PGR031G2474' => 'pgr', 'PGR044G0423' => 'pgr', 'PGSC0003DMG400001128' => 'stu', 'PGSC0003DMG400007336' => 'stu', 'PGSC0003DMG400016318' => 'stu', 'PGSC0003DMG400016319' => 'stu', 'PGSC0003DMG400018074' => 'stu', 'Phvul.001G157700' => 'pvu', 'Phvul.002G148550' => 'pvu', 'Phvul.002G320200' => 'pvu', 'Phvul.003G089200' => 'pvu', 'Phvul.007G126000' => 'pvu', 'Phvul.007G126100' => 'pvu', 'Phvul.007G178000' => 'pvu', 'Phvul.007G178200' => 'pvu', 'Potri.002G043000' => 'ptr', 'Potri.002G043200' => 'ptr', 'Potri.003G123750' => 'ptr', 'Potri.005G055401' => 'ptr', 'Potri.005G219700' => 'ptr', 'Potri.005G220000' => 'ptr', 'Potri.008G161901' => 'ptr', 'Potri.008G162000' => 'ptr', 'Potri.008G162400' => 'ptr', 'Potri.010G076900' => 'ptr', 'Pp3c12_9180' => 'ppa', 'Pp3c13_19770' => 'ppa', 'Pp3c14_22950' => 'ppa', 'Pp3c16_12160' => 'ppa', 'Pp3c27_7820' => 'ppa', 'Pp3c2_3490' => 'ppa', 'Pp3c3_23700' => 'ppa', 'Pp3c3_36520' => 'ppa', 'Pp3c4_15250' => 'ppa', 'PRCOL_00007002' => 'pco', 'Prupe.1G030600' => 'ppe', 'Prupe.1G030700' => 'ppe', 'Prupe.6G345200' => 'ppe', 'Prupe.8G230300' => 'ppe', 'Prupe.8G230500' => 'ppe', 'Psat3g059600' => 'psa', 'Psat5g200920' => 'psa', 'Psat6g056440' => 'psa', 'Psat6g057360' => 'psa', 'Psat6g134120' => 'psa', 'Psat6g134160' => 'psa', 'Psat7g008640' => 'psa', 'Psat7g185240' => 'psa', 'PSO017G1330' => 'pso', 'PSO063G6097' => 'pso', 'PSO170G0835' => 'pso', 'PSO170G2499' => 'pso', 'PSO210G5058' => 'pso', 'PSO210G6154' => 'pso', 'PSO585G0031' => 'pso', 'PSO832G0264' => 'pso', 'PSO832G4288' => 'pso', 'QL03p027355' => 'qlo', 'QL03p027430' => 'qlo', 'QL04p081380' => 'qlo', 'QL06p015642' => 'qlo', 'QL06p015650' => 'qlo', 'QL06p015686' => 'qlo', 'QL12p042927' => 'qlo', 'QL93p1863_0035' => 'qlo', 'RcHm_v2.0_Chr3g0450581' => 'rch', 'RcHm_v2.0_Chr4g0390371' => 'rch', 'RcHm_v2.0_Chr4g0390381' => 'rch', 'RcHm_v2.0_Chr4g0390491' => 'rch', 'RcHm_v2.0_Chr4g0390501' => 'rch', 'RcHm_v2.0_Chr6g0289231' => 'rch', 'Rhsim04G0190400' => 'rsi', 'Rhsim04G0190500' => 'rsi', 'Rhsim04G0190600' => 'rsi', 'Rhsim13G0031400' => 'rsi', 'Rhsim13G0165600' => 'rsi', 'RhsimUnG0114600' => 'rsi', 'RhsimUnG0114700' => 'rsi', 'Sabra02G0034800' => 'sbr', 'Sabra02G0035100' => 'sbr', 'Sabra05G0168600' => 'sbr', 'Sabra05G0168800' => 'sbr', 'Sabra08G0123700' => 'sbr', 'Sabra10G0031900' => 'sbr', 'Sabra13G0039000' => 'sbr', 'SalBow2G0782' => 'sbo', 'SalBow2G1403' => 'sbo', 'SalBow4G0074' => 'sbo', 'SalBow4G2635' => 'sbo', 'SalBow5G3010' => 'sbo', 'Sc05g0000870' => 'sci', 'Sc05g0000890' => 'sci', 'Sc13g0005000' => 'sci', 'Sc13g0005030' => 'sci', 'Sc19g0003790' => 'sci', 'Sc19g0003800' => 'sci', 'Sed0003467' => 'sed', 'Sed0009355' => 'sed', 'Sed0009894' => 'sed', 'Sed0011972' => 'sed', 'Sed0021483' => 'sed', 'Sed0021750' => 'sed', 'Sed0026279' => 'sed', 'SEGI_05312' => 'sgi', 'SEGI_10112' => 'sgi', 'SEGI_15835' => 'sgi', 'SEGI_30386' => 'sgi', 'SEGI_34122' => 'sgi', 'SEGI_35063' => 'sgi', 'SGA_v2.0_scaffold101G29794' => 'sas', 'SGA_v2.0_scaffold1G00573' => 'sas', 'SGA_v2.0_scaffold79G25637' => 'sas', 'SGA_v2.0_scaffold88G27283' => 'sas', 'SGA_v2.0_scaffold88G27285' => 'sas', 'SGA_v2.0_scaffold88G27331' => 'sas', 'SHI09937' => 'shi', 'SMO119G0302' => 'smo', 'SMO137G0231' => 'smo', 'SMO367G1151' => 'smo', 'Solyc02g082000.3' => 'sly', 'Solyc06g031670.3' => 'sly', 'Solyc06g053810.3' => 'sly', 'Solyc07g025457.1' => 'sly', 'Solyc08g059740.1' => 'sly', 'Solyc08g059750.3' => 'sly', 'Solyc09g083370.3' => 'sly', 'Solyc12g038950.3' => 'sly', 'Sopen02g026630' => 'spe', 'Sopen06g018930' => 'spe', 'Sopen06g018940' => 'spe', 'Sopen08g009460' => 'spe', 'Sopen09g032290' => 'spe', 'Sp1g03080' => 'spa', 'Sp1g03090' => 'spa', 'Sp1g05480' => 'spa', 'Sp2g07860' => 'spa', 'Sp2g08430' => 'spa', 'Sp2g08440' => 'spa', 'Sp2g26200' => 'spa', 'Sp4g13170' => 'spa', 'Sp6g33840' => 'spa', 'SpUn1204_0010' => 'spa', 'TAR365G0908' => 'tar', 'TAR381G1270' => 'tar', 'TAR381G1651' => 'tar', 'TAR625G1131' => 'tar', 'TAR633G0962' => 'tar', 'TAR633G1729' => 'tar', 'TAR633G1864' => 'tar', 'TAR636G0221' => 'tar', 'TAR636G0314' => 'tar', 'TAR636G3202' => 'tar', 'THA.LOC104800805' => 'tha', 'THA.LOC104801096' => 'tha', 'THA.LOC104801555' => 'tha', 'THA.LOC104808491' => 'tha', 'THA.LOC104808595' => 'tha', 'THA.LOC104815985' => 'tha', 'THA.LOC104822250' => 'tha', 'THA.LOC104826071' => 'tha', 'Thecc.01G265200' => 'tca', 'Thecc.01G265300' => 'tca', 'Thecc.01G265700' => 'tca', 'Thecc.03G109100' => 'tca', 'Thecc.04G245900' => 'tca', 'Thecc.04G246000' => 'tca', 'Thhalv10003334m.g' => 'esa', 'Thhalv10005508m.g' => 'esa', 'Thhalv10005643m.g' => 'esa', 'Thhalv10007316m.g' => 'esa', 'Thhalv10009006m.g' => 'esa', 'Thhalv10009309m.g' => 'esa', 'Thhalv10014917m.g' => 'esa', 'Thhalv10014919m.g' => 'esa', 'Thhalv10015393m.g' => 'esa', 'Thhalv10016515m.g' => 'esa', 'Thhalv10029242m.g' => 'esa', 'TPR.G16654' => 'tpr', 'TPR.G20589' => 'tpr', 'TPR.G23029' => 'tpr', 'TPR.G27731' => 'tpr', 'TPR.G28889' => 'tpr', 'TPR.G28899' => 'tpr', 'TPR.G30846' => 'tpr', 'TPR.G5452' => 'tpr', 'TPR.G5713' => 'tpr', 'TPR.G9046' => 'tpr', 'TPR.G9061' => 'tpr', 'TWI09G1075' => 'twi', 'TWI12G0806' => 'twi', 'TWI18G0108' => 'twi', 'TWI53G1361' => 'twi', 'TWI73G0185' => 'twi', 'TWI73G0427' => 'twi', 'unitig_37.g12001' => 'ugi', 'unitig_747.g21660' => 'ugi', 'unitig_748.g7232' => 'ugi', 'unitig_748.g7315' => 'ugi', 'unitig_85.g27262' => 'ugi', 'unitig_92.g28220' => 'ugi', 'vmacro02632' => 'vma', 'vmacro08410' => 'vma', 'vmacro08411' => 'vma', 'vmacro15407' => 'vma', 'VMungo0251G3619' => 'vmu', 'VMungo0720G1204' => 'vmu', 'VMungo0720G1918' => 'vmu', 'VMungo0720G2387' => 'vmu', 'VMungo0720G2961' => 'vmu', 'VMungo1215G2154' => 'vmu', 'VMungo1383G2411' => 'vmu', 'Zm00001eb051130' => 'zma', 'Zm00001eb116830' => 'zma', 'Zm00001eb116850' => 'zma', 'Zm00001eb151740' => 'zma', 'Zm00001eb292360' => 'zma', 'Zm00001eb301640' => 'zma' ) $gf_id = 'HOM05D000856' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000856' ) $data_identifier = 'HOM05D000856' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 13, 'ath' => (int) 10, 'atr' => (int) 1, 'acertr' => (int) 8, 'cqu' => (int) 6, 'bca' => (int) 21, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 11, 'car' => (int) 9, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 8, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 5, 'fan' => (int) 16, 'fve' => (int) 6, 'gma' => (int) 11, 'ghi' => (int) 19, 'gra' => (int) 9, 'vvi' => (int) 7, 'han' => (int) 17, 'cav' => (int) 5, 'hma' => (int) 2, 'vpl' => (int) 2, 'sun' => (int) 7, 'lal' => (int) 9, 'lja' => (int) 5, 'lonja' => (int) 9, 'lsa' => (int) 5, 'mes' => (int) 8, 'mpo' => (int) 3, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 10, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 15, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 9, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 9, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 6, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 5, 'spa' => (int) 10, 'tar' => (int) 10, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 11, 'tpr' => (int) 11, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 4, 'vmu' => (int) 7, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb301640' $species_info = array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ) $local_species = 'shi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000856', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p00010' => 'bna', 'A03p04160' => 'bna', 'A03p17160' => 'bna', 'A04p23370' => 'bna', 'A05p14860' => 'bna', 'A08p37020' => 'bna', 'A09p08050' => 'bna', 'A09p66800' => 'bna', 'A09p67940' => 'bna', 'A10p02680' => 'bna', 'A10p05320' => 'bna', 'Aa31LG1G20560' => 'aar', 'Aa31LG1G20610' => 'aar', 'Aa31LG1G7810' => 'aar', 'Aa31LG5G3590' => 'aar', 'Aa31LG5G6140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3819' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4683' => 'aag', 'Actinidia04480' => 'ach', 'Actinidia05466' => 'ach', 'Actinidia08445' => 'ach', 'Actinidia21170' => 'ach', 'Actinidia24812' => 'ach', 'Actinidia24951' => 'ach', 'Actinidia40088' => 'ach', 'Ah.02g111660' => 'amhyb', 'Ah.11g048900' => 'amhyb', 'Ah.11g049910' => 'amhyb', 'AL1G13870' => 'aly', 'AL1G13880' => 'aly', 'AL1G16760' => 'aly', 'AL390U10020' => 'aly', 'AL4G25520' => 'aly', 'AL6G19890' => 'aly', 'AL6G19900' => 'aly', 'AL6G19910' => 'aly', 'AL8G40100' => 'aly', 'Aqoxy2G03562' => 'aox', 'Aqoxy5G00316' => 'aox', 'Aqoxy5G00926' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1628KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1H403S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2FU6SJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.882I6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8YRY2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YN1SN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AF70II' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZA8L1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F916KL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHRD8H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KTZ8QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S22EMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8M29T' => 'arhy', 'AT1G04270' => 'ath', 'AT1G04280' => 'ath', 'AT1G06750' => 'ath', 'AT1G33850' => 'ath', 'AT2G30630' => 'ath', 'AT5G09490' => 'ath', 'AT5G09500' => 'ath', 'AT5G09510' => 'ath', 'AT5G43640' => 'ath', 'AT5G63070' => 'ath', 'ATR0605G315' => 'atr', 'Atru.chr11.175' => 'acertr', 'Atru.chr11.653' => 'acertr', 'Atru.chr3.1616' => 'acertr', 'Atru.chr4.2230' => 'acertr', 'Atru.chr4.2232' => 'acertr', 'Atru.chr5.1598' => 'acertr', 'Atru.chr5.1600' => 'acertr', 'Atru.chr5.2188' => 'acertr', 'AUR62008326' => 'cqu', 'AUR62011922' => 'cqu', 'AUR62011924' => 'cqu', 'AUR62021771' => 'cqu', 'AUR62032237' => 'cqu', 'AUR62032240' => 'cqu', 'BcaB01g05572' => 'bca', 'BcaB02g10337' => 'bca', 'BcaB04g19944' => 'bca', 'BcaB05g21548' => 'bca', 'BcaB05g21549' => 'bca', 'BcaB05g23227' => 'bca', 'BcaB06g26256' => 'bca', 'BcaB06g26257' => 'bca', 'BcaB06g28379' => 'bca', 'BcaC02g11159' => 'bca', 'BcaC03g13258' => 'bca', 'BcaC03g13259' => 'bca', 'BcaC05g24456' => 'bca', 'BcaC05g24457' => 'bca', 'BcaC07g36922' => 'bca', 'BcaC07g36923' => 'bca', 'BcaC07g42050' => 'bca', 'BcaC07g42176' => 'bca', 'BcaC07g42195' => 'bca', 'BcaC07g42196' => 'bca', 'BcaNung06674' => 'bca', 'BolC2t06351H' => 'bol', 'BolC2t06352H' => 'bol', 'BolC3t12993H' => 'bol', 'BolC4t23525H' => 'bol', 'BolC4t27475H' => 'bol', 'BolC5t29025H' => 'bol', 'BolC5t29026H' => 'bol', 'BolC8t46898H' => 'bol', 'BolC8t46899H' => 'bol', 'BolC8t52630H' => 'bol', 'BolC8t52765H' => 'bol', 'BolC9t53824H' => 'bol', 'BraA03t09760Z' => 'bra', 'BraA03t10990Z' => 'bra', 'BraA05t20413Z' => 'bra', 'BraA08t35602Z' => 'bra', 'BraA09t36458Z' => 'bra', 'BraA09t42018Z' => 'bra', 'BraA09t42129Z' => 'bra', 'BraA10t42536Z' => 'bra', 'BraA10t42537Z' => 'bra', 'C01p10690' => 'bna', 'C02p03890' => 'bna', 'C02p03900' => 'bna', 'C03p04620' => 'bna', 'C04p19870' => 'bna', 'C04p59670' => 'bna', 'C05p02460' => 'bna', 'C05p02470' => 'bna', 'C08p00980' => 'bna', 'C08p00990' => 'bna', 'C08p51030' => 'bna', 'C08p52360' => 'bna', 'C09p09120' => 'bna', 'CAN.G19.15' => 'can', 'CAN.G251.10' => 'can', 'CAN.G251.9' => 'can', 'CAN.G398.24' => 'can', 'CAN.G410.32' => 'can', 'CAN.G881.2' => 'can', 'CANSAT01G3025' => 'cansat', 'CANSAT78G1211' => 'cansat', 'CANSAT78G1218' => 'cansat', 'CANSAT78G1521' => 'cansat', 'CANSAT78G1670' => 'cansat', 'CARHR003600' => 'chi', 'CARHR003610' => 'chi', 'CARHR006290' => 'chi', 'CARHR006430' => 'chi', 'CARHR124110' => 'chi', 'CARHR203870' => 'chi', 'CARHR203880' => 'chi', 'CARHR203890' => 'chi', 'CARHR276880' => 'chi', 'Carub.0001s0346' => 'cru', 'Carub.0001s0347' => 'cru', 'Carub.0001s0607' => 'cru', 'Carub.0003s2768' => 'cru', 'Carub.0003s2769' => 'cru', 'Carub.0004s1178' => 'cru', 'Carub.0006s0806' => 'cru', 'Carub.0006s0807' => 'cru', 'Carub.0006s0808' => 'cru', 'Carub.0008s0501' => 'cru', 'Carub.0008s2379' => 'cru', 'Ca_08655_v3' => 'car', 'Ca_08922_v3' => 'car', 'Ca_08923_v3' => 'car', 'Ca_09119_v3' => 'car', 'Ca_09703_v3' => 'car', 'Ca_09705_v3' => 'car', 'Ca_09835_v3' => 'car', 'Ca_26403_v3' => 'car', 'Ca_30719_v3' => 'car', 'CBR_g17958' => 'cbr', 'CBR_g40516' => 'cbr', 'Cc00_g05350' => 'ccan', 'Cc01_g18690' => 'ccan', 'Cc03_g04830' => 'ccan', 'Cc03_g04850' => 'ccan', 'CDE02G4469' => 'cde', 'CDE06G0883' => 'cde', 'CDE06G1295' => 'cde', 'CDE06G1390' => 'cde', 'CDE07G0584' => 'cde', 'CDE07G1084' => 'cde', 'CDE08G1259' => 'cde', 'Cfa002341' => 'cfa', 'Cfa024337' => 'cfa', 'Ciclev10004749m.g' => 'ccl', 'Ciclev10006127m.g' => 'ccl', 'Ciclev10019720m.g' => 'ccl', 'Ciclev10022652m.g' => 'ccl', 'CiPaw.01G190400' => 'cil', 'CiPaw.01G190500' => 'cil', 'CiPaw.02G116400' => 'cil', 'CiPaw.02G116500' => 'cil', 'CiPaw.04G183000' => 'cil', 'CiPaw.04G183300' => 'cil', 'ClCG05G004610' => 'cla', 'ClCG05G004620' => 'cla', 'ClCG06G006730' => 'cla', 'ClCG06G006740' => 'cla', 'ClCG11G003690' => 'cla', 'COL.COLO4_08276' => 'col', 'COL.COLO4_08277' => 'col', 'COL.COLO4_15787' => 'col', 'COL.COLO4_15789' => 'col', 'Cpa.g.c44815' => 'cpa', 'Cpa.g.sc52.144' => 'cpa', 'Cpa.g.sc58.46' => 'cpa', 'Cpa.g.sc58.47' => 'cpa', 'Cre08.g360900' => 'cre', 'CsaV3_2G013030' => 'csa', 'CsaV3_2G013050' => 'csa', 'CsaV3_2G015620' => 'csa', 'CsaV3_3G012590' => 'csa', 'CsaV3_3G012600' => 'csa', 'CSS0001641' => 'camsi', 'CSS0008310' => 'camsi', 'CSS0013011' => 'camsi', 'CSS0017147' => 'camsi', 'CSS0022970' => 'camsi', 'CSS0025655' => 'camsi', 'CSS0028665' => 'camsi', 'CSS0029117' => 'camsi', 'CSS0032024' => 'camsi', 'CSS0039681' => 'camsi', 'CSS0046516' => 'camsi', 'CSS0050307' => 'camsi', 'DCAR_005871' => 'dca', 'DCAR_007342' => 'dca', 'DCAR_024228' => 'dca', 'DCAR_027277' => 'dca', 'DCAR_030718' => 'dca', 'Dinv20287' => 'din', 'Dinv22461' => 'din', 'Dinv22464' => 'din', 'Dinv29912' => 'din', 'Dinv29913' => 'din', 'Dinv34580' => 'din', 'Dinv34582' => 'din', 'Dinv44632' => 'din', 'Duzib052G0266' => 'dzi', 'Duzib133G0907' => 'dzi', 'Duzib133G1034' => 'dzi', 'Duzib138G0207' => 'dzi', 'Duzib138G0491' => 'dzi', 'Duzib151G0812' => 'dzi', 'Duzib151G1166' => 'dzi', 'Duzib168G0192' => 'dzi', 'Duzib211G0077' => 'dzi', 'Duzib212G0429' => 'dzi', 'Duzib212G0472' => 'dzi', 'ECA233G2617' => 'eca', 'ECA236G4188' => 'eca', 'ECA240G0936' => 'eca', 'ECA240G1129' => 'eca', 'ECA247G0623' => 'eca', 'EL10Ac5g10451' => 'bvu', 'EL10Ac5g10453' => 'bvu', 'EL10Ac5g10894' => 'bvu', 'Eucgr.H00192' => 'egr', 'Eucgr.H00193' => 'egr', 'Eucgr.H00194' => 'egr', 'Eucgr.J01562' => 'egr', 'Eucgr.K03301' => 'egr', 'FAN02G0632' => 'fan', 'FAN05G5378' => 'fan', 'FAN09G3247' => 'fan', 'FAN12G0435' => 'fan', 'FAN12G2426' => 'fan', 'FAN14G1707' => 'fan', 'FAN14G4725' => 'fan', 'FAN15G2071' => 'fan', 'FAN17G3065' => 'fan', 'FAN19G1376' => 'fan', 'FAN20G0354' => 'fan', 'FAN20G2429' => 'fan', 'FAN20G2658' => 'fan', 'FAN24G2343' => 'fan', 'FAN27G2362' => 'fan', 'FAN28G1765' => 'fan', 'FvH4_1g16020' => 'fve', 'FvH4_2g04890' => 'fve', 'FvH4_2g22270' => 'fve', 'FvH4_4g02630' => 'fve', 'FvH4_4g02640' => 'fve', 'FvH4_6g02650' => 'fve', 'Glyma.02G140600' => 'gma', 'Glyma.03G159900' => 'gma', 'Glyma.05G234800' => 'gma', 'Glyma.07G269600' => 'gma', 'Glyma.08G042300' => 'gma', 'Glyma.10G033500' => 'gma', 'Glyma.10G185200' => 'gma', 'Glyma.17G004300' => 'gma', 'Glyma.19G161900' => 'gma', 'Glyma.20G205100' => 'gma', 'Glyma.20G205200' => 'gma', 'Gohir.A01G139101' => 'ghi', 'Gohir.A02G035600' => 'ghi', 'Gohir.A02G117901' => 'ghi', 'Gohir.A07G210100' => 'ghi', 'Gohir.A07G210200' => 'ghi', 'Gohir.A08G061100' => 'ghi', 'Gohir.A09G223000' => 'ghi', 'Gohir.A09G223100' => 'ghi', 'Gohir.A10G113900' => 'ghi', 'Gohir.A10G114000' => 'ghi', 'Gohir.D02G042300' => 'ghi', 'Gohir.D07G216100' => 'ghi', 'Gohir.D07G216200' => 'ghi', 'Gohir.D08G070400' => 'ghi', 'Gohir.D09G225000' => 'ghi', 'Gohir.D09G225100' => 'ghi', 'Gohir.D10G152300' => 'ghi', 'Gohir.D10G153200' => 'ghi', 'Gohir.D11G133701' => 'ghi', 'Gorai.004G074100' => 'gra', 'Gorai.005G046800' => 'gra', 'Gorai.006G246500' => 'gra', 'Gorai.006G246600' => 'gra', 'Gorai.007G142900' => 'gra', 'Gorai.011G171000' => 'gra', 'Gorai.011G171100' => 'gra', 'Gorai.013G104300' => 'gra', 'Gorai.013G104400' => 'gra', 'GSVIVG01000754001' => 'vvi', 'GSVIVG01000756001' => 'vvi', 'GSVIVG01010903001' => 'vvi', 'GSVIVG01017623001' => 'vvi', 'GSVIVG01018113001' => 'vvi', 'GSVIVG01018116001' => 'vvi', 'GSVIVG01018118001' => 'vvi', 'HanXRQChr03g0076211' => 'han', 'HanXRQChr03g0092431' => 'han', 'HanXRQChr03g0092441' => 'han', 'HanXRQChr03g0092591' => 'han', 'HanXRQChr03g0092671' => 'han', 'HanXRQChr03g0092681' => 'han', 'HanXRQChr03g0092691' => 'han', 'HanXRQChr03g0092701' => 'han', 'HanXRQChr03g0092721' => 'han', 'HanXRQChr03g0092731' => 'han', 'HanXRQChr04g0113681' => 'han', 'HanXRQChr10g0281371' => 'han', 'HanXRQChr11g0337141' => 'han', 'HanXRQChr13g0424521' => 'han', 'HanXRQChr13g0424531' => 'han', 'HanXRQChr13g0424541' => 'han', 'HanXRQChr16g0498221' => 'han', 'Haze_04377' => 'cav', 'Haze_11298' => 'cav', 'Haze_24547' => 'cav', 'Haze_24550' => 'cav', 'Haze_26587' => 'cav', 'Hma1.2p1_0650F.1_g195410' => 'hma', 'Hma1.2p1_0893F.1_g233470' => 'hma', 'HPP92_006508' => 'vpl', 'HPP92_024780' => 'vpl', 'Hund02688' => 'sun', 'Hund09380' => 'sun', 'Hund09381' => 'sun', 'Hund09832' => 'sun', 'Hund09833' => 'sun', 'Hund11351' => 'sun', 'Hund11513' => 'sun', 'Lalb_Chr06g0162591' => 'lal', 'Lalb_Chr06g0162601' => 'lal', 'Lalb_Chr06g0169321' => 'lal', 'Lalb_Chr09g0330951' => 'lal', 'Lalb_Chr16g0387631' => 'lal', 'Lalb_Chr21g0306241' => 'lal', 'Lalb_Chr25g0290051' => 'lal', 'Lalb_Chr25g0290061' => 'lal', 'Lalb_Chr25g0290071' => 'lal', 'Lj1g0003876' => 'lja', 'Lj1P1207T36' => 'lonja', 'Lj2C1156G12' => 'lonja', 'Lj3A793G39' => 'lonja', 'Lj3C580G2' => 'lonja', 'Lj3C780G2' => 'lonja', 'Lj3C780T4' => 'lonja', 'Lj3C793G9' => 'lonja', 'Lj4g0012960' => 'lja', 'Lj5g0021252' => 'lja', 'Lj5g0021484' => 'lja', 'Lj5g0024528' => 'lja', 'Lj6A399T12' => 'lonja', 'Lj6A656G65' => 'lonja', 'Lsat_1_v5_gn_3_125500' => 'lsa', 'Lsat_1_v5_gn_3_125540' => 'lsa', 'Lsat_1_v5_gn_5_72701' => 'lsa', 'Lsat_1_v5_gn_8_91560' => 'lsa', 'Lsat_1_v5_gn_9_9640' => 'lsa', 'Manes.01G200600' => 'mes', 'Manes.01G200700' => 'mes', 'Manes.03G168900' => 'mes', 'Manes.03G169000' => 'mes', 'Manes.05G085801' => 'mes', 'Manes.05G086200' => 'mes', 'Manes.15G036700' => 'mes', 'Manes.15G036900' => 'mes', 'Mapoly0004s0172' => 'mpo', 'Mapoly0023s0001' => 'mpo', 'Mapoly0142s0012' => 'mpo', 'MBI01_g32854_MAGBIO' => 'mbi', 'MBI11_g24427_MAGBIO' => 'mbi', 'MBI11_g47319_MAGBIO' => 'mbi', 'MCO01G433' => 'mco', 'MD00G1187800' => 'mdo', 'MD04G1226500' => 'mdo', 'MD05G1203900' => 'mdo', 'MD10G1191100' => 'mdo', 'MD12G1243500' => 'mdo', 'MD13G1207000' => 'mdo', 'MD13G1207100' => 'mdo', 'MD16G1208600' => 'mdo', 'Medtr1g050352' => 'mtr', 'Medtr1g070385' => 'mtr', 'Medtr1g070450' => 'mtr', 'Medtr1g075200' => 'mtr', 'Medtr1g075250' => 'mtr', 'Medtr1g075260' => 'mtr', 'Medtr1g475250' => 'mtr', 'Medtr4g075450' => 'mtr', 'Medtr7g096300' => 'mtr', 'Medtr8g105110' => 'mtr', 'MELO3C006470.2' => 'cme', 'MELO3C006471.2' => 'cme', 'MELO3C020772.2' => 'cme', 'MELO3C026780.2' => 'cme', 'MELO3C026781.2' => 'cme', 'Migut.D00390' => 'egut', 'Migut.G00435' => 'egut', 'Migut.G00436' => 'egut', 'Migut.G00718' => 'egut', 'MSTRG.21891' => 'ama', 'MSTRG.26910' => 'ama', 'MSTRG.4099' => 'ama', 'MSTRG.9925' => 'ama', 'Nitab4.5_0000165g0010' => 'nta', 'Nitab4.5_0000209g0180' => 'nta', 'Nitab4.5_0000244g0440' => 'nta', 'Nitab4.5_0000525g0220' => 'nta', 'Nitab4.5_0001597g0020' => 'nta', 'Nitab4.5_0001878g0040' => 'nta', 'Nitab4.5_0001878g0060' => 'nta', 'Nitab4.5_0002838g0100' => 'nta', 'Nitab4.5_0002838g0120' => 'nta', 'Nitab4.5_0004798g0030' => 'nta', 'Nitab4.5_0005420g0010' => 'nta', 'Nitab4.5_0005507g0010' => 'nta', 'Nitab4.5_0005574g0020' => 'nta', 'Nitab4.5_0005838g0010' => 'nta', 'Nitab4.5_0010580g0020' => 'nta', 'Nn1g02599' => 'nnu', 'Nn1g02608' => 'nnu', 'Nn3g17742' => 'nnu', 'Nn3g19534' => 'nnu', 'Nn3g19535' => 'nnu', 'Oeu008790.1' => 'oeu', 'Oeu008792.1' => 'oeu', 'Oeu032590.1' => 'oeu', 'Oeu035349.1' => 'oeu', 'Oeu049791.1' => 'oeu', 'Os01g0774500' => 'osa', 'Os03g0628800' => 'osa', 'Os03g0798600' => 'osa', 'Os05g0508800' => 'osa', 'Peaxi162Scf00036g02018' => 'pax', 'Peaxi162Scf00578g00032' => 'pax', 'Peaxi162Scf00578g00317' => 'pax', 'Peaxi162Scf00785g00114' => 'pax', 'Peaxi162Scf00813g00119' => 'pax', 'Peaxi162Scf00906g00227' => 'pax', 'PGR004G0875' => 'pgr', 'PGR004G2424' => 'pgr', 'PGR031G1239' => 'pgr', 'PGR031G2474' => 'pgr', 'PGR044G0423' => 'pgr', 'PGSC0003DMG400001128' => 'stu', 'PGSC0003DMG400007336' => 'stu', 'PGSC0003DMG400016318' => 'stu', 'PGSC0003DMG400016319' => 'stu', 'PGSC0003DMG400018074' => 'stu', 'Phvul.001G157700' => 'pvu', 'Phvul.002G148550' => 'pvu', 'Phvul.002G320200' => 'pvu', 'Phvul.003G089200' => 'pvu', 'Phvul.007G126000' => 'pvu', 'Phvul.007G126100' => 'pvu', 'Phvul.007G178000' => 'pvu', 'Phvul.007G178200' => 'pvu', 'Potri.002G043000' => 'ptr', 'Potri.002G043200' => 'ptr', 'Potri.003G123750' => 'ptr', 'Potri.005G055401' => 'ptr', 'Potri.005G219700' => 'ptr', 'Potri.005G220000' => 'ptr', 'Potri.008G161901' => 'ptr', 'Potri.008G162000' => 'ptr', 'Potri.008G162400' => 'ptr', 'Potri.010G076900' => 'ptr', 'Pp3c12_9180' => 'ppa', 'Pp3c13_19770' => 'ppa', 'Pp3c14_22950' => 'ppa', 'Pp3c16_12160' => 'ppa', 'Pp3c27_7820' => 'ppa', 'Pp3c2_3490' => 'ppa', 'Pp3c3_23700' => 'ppa', 'Pp3c3_36520' => 'ppa', 'Pp3c4_15250' => 'ppa', 'PRCOL_00007002' => 'pco', 'Prupe.1G030600' => 'ppe', 'Prupe.1G030700' => 'ppe', 'Prupe.6G345200' => 'ppe', 'Prupe.8G230300' => 'ppe', 'Prupe.8G230500' => 'ppe', 'Psat3g059600' => 'psa', 'Psat5g200920' => 'psa', 'Psat6g056440' => 'psa', 'Psat6g057360' => 'psa', 'Psat6g134120' => 'psa', 'Psat6g134160' => 'psa', 'Psat7g008640' => 'psa', 'Psat7g185240' => 'psa', 'PSO017G1330' => 'pso', 'PSO063G6097' => 'pso', 'PSO170G0835' => 'pso', 'PSO170G2499' => 'pso', 'PSO210G5058' => 'pso', 'PSO210G6154' => 'pso', 'PSO585G0031' => 'pso', 'PSO832G0264' => 'pso', 'PSO832G4288' => 'pso', 'QL03p027355' => 'qlo', 'QL03p027430' => 'qlo', 'QL04p081380' => 'qlo', 'QL06p015642' => 'qlo', 'QL06p015650' => 'qlo', 'QL06p015686' => 'qlo', 'QL12p042927' => 'qlo', 'QL93p1863_0035' => 'qlo', 'RcHm_v2.0_Chr3g0450581' => 'rch', 'RcHm_v2.0_Chr4g0390371' => 'rch', 'RcHm_v2.0_Chr4g0390381' => 'rch', 'RcHm_v2.0_Chr4g0390491' => 'rch', 'RcHm_v2.0_Chr4g0390501' => 'rch', 'RcHm_v2.0_Chr6g0289231' => 'rch', 'Rhsim04G0190400' => 'rsi', 'Rhsim04G0190500' => 'rsi', 'Rhsim04G0190600' => 'rsi', 'Rhsim13G0031400' => 'rsi', 'Rhsim13G0165600' => 'rsi', 'RhsimUnG0114600' => 'rsi', 'RhsimUnG0114700' => 'rsi', 'Sabra02G0034800' => 'sbr', 'Sabra02G0035100' => 'sbr', 'Sabra05G0168600' => 'sbr', 'Sabra05G0168800' => 'sbr', 'Sabra08G0123700' => 'sbr', 'Sabra10G0031900' => 'sbr', 'Sabra13G0039000' => 'sbr', 'SalBow2G0782' => 'sbo', 'SalBow2G1403' => 'sbo', 'SalBow4G0074' => 'sbo', 'SalBow4G2635' => 'sbo', 'SalBow5G3010' => 'sbo', 'Sc05g0000870' => 'sci', 'Sc05g0000890' => 'sci', 'Sc13g0005000' => 'sci', 'Sc13g0005030' => 'sci', 'Sc19g0003790' => 'sci', 'Sc19g0003800' => 'sci', 'Sed0003467' => 'sed', 'Sed0009355' => 'sed', 'Sed0009894' => 'sed', 'Sed0011972' => 'sed', 'Sed0021483' => 'sed', 'Sed0021750' => 'sed', 'Sed0026279' => 'sed', 'SEGI_05312' => 'sgi', 'SEGI_10112' => 'sgi', 'SEGI_15835' => 'sgi', 'SEGI_30386' => 'sgi', 'SEGI_34122' => 'sgi', 'SEGI_35063' => 'sgi', 'SGA_v2.0_scaffold101G29794' => 'sas', 'SGA_v2.0_scaffold1G00573' => 'sas', 'SGA_v2.0_scaffold79G25637' => 'sas', 'SGA_v2.0_scaffold88G27283' => 'sas', 'SGA_v2.0_scaffold88G27285' => 'sas', 'SGA_v2.0_scaffold88G27331' => 'sas', 'SHI09937' => 'shi', 'SMO119G0302' => 'smo', 'SMO137G0231' => 'smo', 'SMO367G1151' => 'smo', 'Solyc02g082000.3' => 'sly', 'Solyc06g031670.3' => 'sly', 'Solyc06g053810.3' => 'sly', 'Solyc07g025457.1' => 'sly', 'Solyc08g059740.1' => 'sly', 'Solyc08g059750.3' => 'sly', 'Solyc09g083370.3' => 'sly', 'Solyc12g038950.3' => 'sly', 'Sopen02g026630' => 'spe', 'Sopen06g018930' => 'spe', 'Sopen06g018940' => 'spe', 'Sopen08g009460' => 'spe', 'Sopen09g032290' => 'spe', 'Sp1g03080' => 'spa', 'Sp1g03090' => 'spa', 'Sp1g05480' => 'spa', 'Sp2g07860' => 'spa', 'Sp2g08430' => 'spa', 'Sp2g08440' => 'spa', 'Sp2g26200' => 'spa', 'Sp4g13170' => 'spa', 'Sp6g33840' => 'spa', 'SpUn1204_0010' => 'spa', 'TAR365G0908' => 'tar', 'TAR381G1270' => 'tar', 'TAR381G1651' => 'tar', 'TAR625G1131' => 'tar', 'TAR633G0962' => 'tar', 'TAR633G1729' => 'tar', 'TAR633G1864' => 'tar', 'TAR636G0221' => 'tar', 'TAR636G0314' => 'tar', 'TAR636G3202' => 'tar', 'THA.LOC104800805' => 'tha', 'THA.LOC104801096' => 'tha', 'THA.LOC104801555' => 'tha', 'THA.LOC104808491' => 'tha', 'THA.LOC104808595' => 'tha', 'THA.LOC104815985' => 'tha', 'THA.LOC104822250' => 'tha', 'THA.LOC104826071' => 'tha', 'Thecc.01G265200' => 'tca', 'Thecc.01G265300' => 'tca', 'Thecc.01G265700' => 'tca', 'Thecc.03G109100' => 'tca', 'Thecc.04G245900' => 'tca', 'Thecc.04G246000' => 'tca', 'Thhalv10003334m.g' => 'esa', 'Thhalv10005508m.g' => 'esa', 'Thhalv10005643m.g' => 'esa', 'Thhalv10007316m.g' => 'esa', 'Thhalv10009006m.g' => 'esa', 'Thhalv10009309m.g' => 'esa', 'Thhalv10014917m.g' => 'esa', 'Thhalv10014919m.g' => 'esa', 'Thhalv10015393m.g' => 'esa', 'Thhalv10016515m.g' => 'esa', 'Thhalv10029242m.g' => 'esa', 'TPR.G16654' => 'tpr', 'TPR.G20589' => 'tpr', 'TPR.G23029' => 'tpr', 'TPR.G27731' => 'tpr', 'TPR.G28889' => 'tpr', 'TPR.G28899' => 'tpr', 'TPR.G30846' => 'tpr', 'TPR.G5452' => 'tpr', 'TPR.G5713' => 'tpr', 'TPR.G9046' => 'tpr', 'TPR.G9061' => 'tpr', 'TWI09G1075' => 'twi', 'TWI12G0806' => 'twi', 'TWI18G0108' => 'twi', 'TWI53G1361' => 'twi', 'TWI73G0185' => 'twi', 'TWI73G0427' => 'twi', 'unitig_37.g12001' => 'ugi', 'unitig_747.g21660' => 'ugi', 'unitig_748.g7232' => 'ugi', 'unitig_748.g7315' => 'ugi', 'unitig_85.g27262' => 'ugi', 'unitig_92.g28220' => 'ugi', 'vmacro02632' => 'vma', 'vmacro08410' => 'vma', 'vmacro08411' => 'vma', 'vmacro15407' => 'vma', 'VMungo0251G3619' => 'vmu', 'VMungo0720G1204' => 'vmu', 'VMungo0720G1918' => 'vmu', 'VMungo0720G2387' => 'vmu', 'VMungo0720G2961' => 'vmu', 'VMungo1215G2154' => 'vmu', 'VMungo1383G2411' => 'vmu', 'Zm00001eb051130' => 'zma', 'Zm00001eb116830' => 'zma', 'Zm00001eb116850' => 'zma', 'Zm00001eb151740' => 'zma', 'Zm00001eb292360' => 'zma', 'Zm00001eb301640' => 'zma' ), 'gf_id' => 'HOM05D000856', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000856' ), 'data_identifier' => 'HOM05D000856', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000856', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p00010' => 'bna', 'A03p04160' => 'bna', 'A03p17160' => 'bna', 'A04p23370' => 'bna', 'A05p14860' => 'bna', 'A08p37020' => 'bna', 'A09p08050' => 'bna', 'A09p66800' => 'bna', 'A09p67940' => 'bna', 'A10p02680' => 'bna', 'A10p05320' => 'bna', 'Aa31LG1G20560' => 'aar', 'Aa31LG1G20610' => 'aar', 'Aa31LG1G7810' => 'aar', 'Aa31LG5G3590' => 'aar', 'Aa31LG5G6140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3819' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4683' => 'aag', 'Actinidia04480' => 'ach', 'Actinidia05466' => 'ach', 'Actinidia08445' => 'ach', 'Actinidia21170' => 'ach', 'Actinidia24812' => 'ach', 'Actinidia24951' => 'ach', 'Actinidia40088' => 'ach', 'Ah.02g111660' => 'amhyb', 'Ah.11g048900' => 'amhyb', 'Ah.11g049910' => 'amhyb', 'AL1G13870' => 'aly', 'AL1G13880' => 'aly', 'AL1G16760' => 'aly', 'AL390U10020' => 'aly', 'AL4G25520' => 'aly', 'AL6G19890' => 'aly', 'AL6G19900' => 'aly', 'AL6G19910' => 'aly', 'AL8G40100' => 'aly', 'Aqoxy2G03562' => 'aox', 'Aqoxy5G00316' => 'aox', 'Aqoxy5G00926' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1628KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1H403S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2FU6SJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.882I6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8YRY2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YN1SN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AF70II' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZA8L1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F916KL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHRD8H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KTZ8QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S22EMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8M29T' => 'arhy', 'AT1G04270' => 'ath', 'AT1G04280' => 'ath', 'AT1G06750' => 'ath', 'AT1G33850' => 'ath', 'AT2G30630' => 'ath', 'AT5G09490' => 'ath', 'AT5G09500' => 'ath', 'AT5G09510' => 'ath', 'AT5G43640' => 'ath', 'AT5G63070' => 'ath', 'ATR0605G315' => 'atr', 'Atru.chr11.175' => 'acertr', 'Atru.chr11.653' => 'acertr', 'Atru.chr3.1616' => 'acertr', 'Atru.chr4.2230' => 'acertr', 'Atru.chr4.2232' => 'acertr', 'Atru.chr5.1598' => 'acertr', 'Atru.chr5.1600' => 'acertr', 'Atru.chr5.2188' => 'acertr', 'AUR62008326' => 'cqu', 'AUR62011922' => 'cqu', 'AUR62011924' => 'cqu', 'AUR62021771' => 'cqu', 'AUR62032237' => 'cqu', 'AUR62032240' => 'cqu', 'BcaB01g05572' => 'bca', 'BcaB02g10337' => 'bca', 'BcaB04g19944' => 'bca', 'BcaB05g21548' => 'bca', 'BcaB05g21549' => 'bca', 'BcaB05g23227' => 'bca', 'BcaB06g26256' => 'bca', 'BcaB06g26257' => 'bca', 'BcaB06g28379' => 'bca', 'BcaC02g11159' => 'bca', 'BcaC03g13258' => 'bca', 'BcaC03g13259' => 'bca', 'BcaC05g24456' => 'bca', 'BcaC05g24457' => 'bca', 'BcaC07g36922' => 'bca', 'BcaC07g36923' => 'bca', 'BcaC07g42050' => 'bca', 'BcaC07g42176' => 'bca', 'BcaC07g42195' => 'bca', 'BcaC07g42196' => 'bca', 'BcaNung06674' => 'bca', 'BolC2t06351H' => 'bol', 'BolC2t06352H' => 'bol', 'BolC3t12993H' => 'bol', 'BolC4t23525H' => 'bol', 'BolC4t27475H' => 'bol', 'BolC5t29025H' => 'bol', 'BolC5t29026H' => 'bol', 'BolC8t46898H' => 'bol', 'BolC8t46899H' => 'bol', 'BolC8t52630H' => 'bol', 'BolC8t52765H' => 'bol', 'BolC9t53824H' => 'bol', 'BraA03t09760Z' => 'bra', 'BraA03t10990Z' => 'bra', 'BraA05t20413Z' => 'bra', 'BraA08t35602Z' => 'bra', 'BraA09t36458Z' => 'bra', 'BraA09t42018Z' => 'bra', 'BraA09t42129Z' => 'bra', 'BraA10t42536Z' => 'bra', 'BraA10t42537Z' => 'bra', 'C01p10690' => 'bna', 'C02p03890' => 'bna', 'C02p03900' => 'bna', 'C03p04620' => 'bna', 'C04p19870' => 'bna', 'C04p59670' => 'bna', 'C05p02460' => 'bna', 'C05p02470' => 'bna', 'C08p00980' => 'bna', 'C08p00990' => 'bna', 'C08p51030' => 'bna', 'C08p52360' => 'bna', 'C09p09120' => 'bna', 'CAN.G19.15' => 'can', 'CAN.G251.10' => 'can', 'CAN.G251.9' => 'can', 'CAN.G398.24' => 'can', 'CAN.G410.32' => 'can', 'CAN.G881.2' => 'can', 'CANSAT01G3025' => 'cansat', 'CANSAT78G1211' => 'cansat', 'CANSAT78G1218' => 'cansat', 'CANSAT78G1521' => 'cansat', 'CANSAT78G1670' => 'cansat', 'CARHR003600' => 'chi', 'CARHR003610' => 'chi', 'CARHR006290' => 'chi', 'CARHR006430' => 'chi', 'CARHR124110' => 'chi', 'CARHR203870' => 'chi', 'CARHR203880' => 'chi', 'CARHR203890' => 'chi', 'CARHR276880' => 'chi', 'Carub.0001s0346' => 'cru', 'Carub.0001s0347' => 'cru', 'Carub.0001s0607' => 'cru', 'Carub.0003s2768' => 'cru', 'Carub.0003s2769' => 'cru', 'Carub.0004s1178' => 'cru', 'Carub.0006s0806' => 'cru', 'Carub.0006s0807' => 'cru', 'Carub.0006s0808' => 'cru', 'Carub.0008s0501' => 'cru', 'Carub.0008s2379' => 'cru', 'Ca_08655_v3' => 'car', 'Ca_08922_v3' => 'car', 'Ca_08923_v3' => 'car', 'Ca_09119_v3' => 'car', 'Ca_09703_v3' => 'car', 'Ca_09705_v3' => 'car', 'Ca_09835_v3' => 'car', 'Ca_26403_v3' => 'car', 'Ca_30719_v3' => 'car', 'CBR_g17958' => 'cbr', 'CBR_g40516' => 'cbr', 'Cc00_g05350' => 'ccan', 'Cc01_g18690' => 'ccan', 'Cc03_g04830' => 'ccan', 'Cc03_g04850' => 'ccan', 'CDE02G4469' => 'cde', 'CDE06G0883' => 'cde', 'CDE06G1295' => 'cde', 'CDE06G1390' => 'cde', 'CDE07G0584' => 'cde', 'CDE07G1084' => 'cde', 'CDE08G1259' => 'cde', 'Cfa002341' => 'cfa', 'Cfa024337' => 'cfa', 'Ciclev10004749m.g' => 'ccl', 'Ciclev10006127m.g' => 'ccl', 'Ciclev10019720m.g' => 'ccl', 'Ciclev10022652m.g' => 'ccl', 'CiPaw.01G190400' => 'cil', 'CiPaw.01G190500' => 'cil', 'CiPaw.02G116400' => 'cil', 'CiPaw.02G116500' => 'cil', 'CiPaw.04G183000' => 'cil', 'CiPaw.04G183300' => 'cil', 'ClCG05G004610' => 'cla', 'ClCG05G004620' => 'cla', 'ClCG06G006730' => 'cla', 'ClCG06G006740' => 'cla', 'ClCG11G003690' => 'cla', 'COL.COLO4_08276' => 'col', 'COL.COLO4_08277' => 'col', 'COL.COLO4_15787' => 'col', 'COL.COLO4_15789' => 'col', 'Cpa.g.c44815' => 'cpa', 'Cpa.g.sc52.144' => 'cpa', 'Cpa.g.sc58.46' => 'cpa', 'Cpa.g.sc58.47' => 'cpa', 'Cre08.g360900' => 'cre', 'CsaV3_2G013030' => 'csa', 'CsaV3_2G013050' => 'csa', 'CsaV3_2G015620' => 'csa', 'CsaV3_3G012590' => 'csa', 'CsaV3_3G012600' => 'csa', 'CSS0001641' => 'camsi', 'CSS0008310' => 'camsi', 'CSS0013011' => 'camsi', 'CSS0017147' => 'camsi', 'CSS0022970' => 'camsi', 'CSS0025655' => 'camsi', 'CSS0028665' => 'camsi', 'CSS0029117' => 'camsi', 'CSS0032024' => 'camsi', 'CSS0039681' => 'camsi', 'CSS0046516' => 'camsi', 'CSS0050307' => 'camsi', 'DCAR_005871' => 'dca', 'DCAR_007342' => 'dca', 'DCAR_024228' => 'dca', 'DCAR_027277' => 'dca', 'DCAR_030718' => 'dca', 'Dinv20287' => 'din', 'Dinv22461' => 'din', 'Dinv22464' => 'din', 'Dinv29912' => 'din', 'Dinv29913' => 'din', 'Dinv34580' => 'din', 'Dinv34582' => 'din', 'Dinv44632' => 'din', 'Duzib052G0266' => 'dzi', 'Duzib133G0907' => 'dzi', 'Duzib133G1034' => 'dzi', 'Duzib138G0207' => 'dzi', 'Duzib138G0491' => 'dzi', 'Duzib151G0812' => 'dzi', 'Duzib151G1166' => 'dzi', 'Duzib168G0192' => 'dzi', 'Duzib211G0077' => 'dzi', 'Duzib212G0429' => 'dzi', 'Duzib212G0472' => 'dzi', 'ECA233G2617' => 'eca', 'ECA236G4188' => 'eca', 'ECA240G0936' => 'eca', 'ECA240G1129' => 'eca', 'ECA247G0623' => 'eca', 'EL10Ac5g10451' => 'bvu', 'EL10Ac5g10453' => 'bvu', 'EL10Ac5g10894' => 'bvu', 'Eucgr.H00192' => 'egr', 'Eucgr.H00193' => 'egr', 'Eucgr.H00194' => 'egr', 'Eucgr.J01562' => 'egr', 'Eucgr.K03301' => 'egr', 'FAN02G0632' => 'fan', 'FAN05G5378' => 'fan', 'FAN09G3247' => 'fan', 'FAN12G0435' => 'fan', 'FAN12G2426' => 'fan', 'FAN14G1707' => 'fan', 'FAN14G4725' => 'fan', 'FAN15G2071' => 'fan', 'FAN17G3065' => 'fan', 'FAN19G1376' => 'fan', 'FAN20G0354' => 'fan', 'FAN20G2429' => 'fan', 'FAN20G2658' => 'fan', 'FAN24G2343' => 'fan', 'FAN27G2362' => 'fan', 'FAN28G1765' => 'fan', 'FvH4_1g16020' => 'fve', 'FvH4_2g04890' => 'fve', 'FvH4_2g22270' => 'fve', 'FvH4_4g02630' => 'fve', 'FvH4_4g02640' => 'fve', 'FvH4_6g02650' => 'fve', 'Glyma.02G140600' => 'gma', 'Glyma.03G159900' => 'gma', 'Glyma.05G234800' => 'gma', 'Glyma.07G269600' => 'gma', 'Glyma.08G042300' => 'gma', 'Glyma.10G033500' => 'gma', 'Glyma.10G185200' => 'gma', 'Glyma.17G004300' => 'gma', 'Glyma.19G161900' => 'gma', 'Glyma.20G205100' => 'gma', 'Glyma.20G205200' => 'gma', 'Gohir.A01G139101' => 'ghi', 'Gohir.A02G035600' => 'ghi', 'Gohir.A02G117901' => 'ghi', 'Gohir.A07G210100' => 'ghi', 'Gohir.A07G210200' => 'ghi', 'Gohir.A08G061100' => 'ghi', 'Gohir.A09G223000' => 'ghi', 'Gohir.A09G223100' => 'ghi', 'Gohir.A10G113900' => 'ghi', 'Gohir.A10G114000' => 'ghi', 'Gohir.D02G042300' => 'ghi', 'Gohir.D07G216100' => 'ghi', 'Gohir.D07G216200' => 'ghi', 'Gohir.D08G070400' => 'ghi', 'Gohir.D09G225000' => 'ghi', 'Gohir.D09G225100' => 'ghi', 'Gohir.D10G152300' => 'ghi', 'Gohir.D10G153200' => 'ghi', 'Gohir.D11G133701' => 'ghi', 'Gorai.004G074100' => 'gra', 'Gorai.005G046800' => 'gra', 'Gorai.006G246500' => 'gra', 'Gorai.006G246600' => 'gra', 'Gorai.007G142900' => 'gra', 'Gorai.011G171000' => 'gra', 'Gorai.011G171100' => 'gra', 'Gorai.013G104300' => 'gra', 'Gorai.013G104400' => 'gra', 'GSVIVG01000754001' => 'vvi', 'GSVIVG01000756001' => 'vvi', 'GSVIVG01010903001' => 'vvi', 'GSVIVG01017623001' => 'vvi', 'GSVIVG01018113001' => 'vvi', 'GSVIVG01018116001' => 'vvi', 'GSVIVG01018118001' => 'vvi', 'HanXRQChr03g0076211' => 'han', 'HanXRQChr03g0092431' => 'han', 'HanXRQChr03g0092441' => 'han', 'HanXRQChr03g0092591' => 'han', 'HanXRQChr03g0092671' => 'han', 'HanXRQChr03g0092681' => 'han', 'HanXRQChr03g0092691' => 'han', 'HanXRQChr03g0092701' => 'han', 'HanXRQChr03g0092721' => 'han', 'HanXRQChr03g0092731' => 'han', 'HanXRQChr04g0113681' => 'han', 'HanXRQChr10g0281371' => 'han', 'HanXRQChr11g0337141' => 'han', 'HanXRQChr13g0424521' => 'han', 'HanXRQChr13g0424531' => 'han', 'HanXRQChr13g0424541' => 'han', 'HanXRQChr16g0498221' => 'han', 'Haze_04377' => 'cav', 'Haze_11298' => 'cav', 'Haze_24547' => 'cav', 'Haze_24550' => 'cav', 'Haze_26587' => 'cav', 'Hma1.2p1_0650F.1_g195410' => 'hma', 'Hma1.2p1_0893F.1_g233470' => 'hma', 'HPP92_006508' => 'vpl', 'HPP92_024780' => 'vpl', 'Hund02688' => 'sun', 'Hund09380' => 'sun', 'Hund09381' => 'sun', 'Hund09832' => 'sun', 'Hund09833' => 'sun', 'Hund11351' => 'sun', 'Hund11513' => 'sun', 'Lalb_Chr06g0162591' => 'lal', 'Lalb_Chr06g0162601' => 'lal', 'Lalb_Chr06g0169321' => 'lal', 'Lalb_Chr09g0330951' => 'lal', 'Lalb_Chr16g0387631' => 'lal', 'Lalb_Chr21g0306241' => 'lal', 'Lalb_Chr25g0290051' => 'lal', 'Lalb_Chr25g0290061' => 'lal', 'Lalb_Chr25g0290071' => 'lal', 'Lj1g0003876' => 'lja', 'Lj1P1207T36' => 'lonja', 'Lj2C1156G12' => 'lonja', 'Lj3A793G39' => 'lonja', 'Lj3C580G2' => 'lonja', 'Lj3C780G2' => 'lonja', 'Lj3C780T4' => 'lonja', 'Lj3C793G9' => 'lonja', 'Lj4g0012960' => 'lja', 'Lj5g0021252' => 'lja', 'Lj5g0021484' => 'lja', 'Lj5g0024528' => 'lja', 'Lj6A399T12' => 'lonja', 'Lj6A656G65' => 'lonja', 'Lsat_1_v5_gn_3_125500' => 'lsa', 'Lsat_1_v5_gn_3_125540' => 'lsa', 'Lsat_1_v5_gn_5_72701' => 'lsa', 'Lsat_1_v5_gn_8_91560' => 'lsa', 'Lsat_1_v5_gn_9_9640' => 'lsa', 'Manes.01G200600' => 'mes', 'Manes.01G200700' => 'mes', 'Manes.03G168900' => 'mes', 'Manes.03G169000' => 'mes', 'Manes.05G085801' => 'mes', 'Manes.05G086200' => 'mes', 'Manes.15G036700' => 'mes', 'Manes.15G036900' => 'mes', 'Mapoly0004s0172' => 'mpo', 'Mapoly0023s0001' => 'mpo', 'Mapoly0142s0012' => 'mpo', 'MBI01_g32854_MAGBIO' => 'mbi', 'MBI11_g24427_MAGBIO' => 'mbi', 'MBI11_g47319_MAGBIO' => 'mbi', 'MCO01G433' => 'mco', 'MD00G1187800' => 'mdo', 'MD04G1226500' => 'mdo', 'MD05G1203900' => 'mdo', 'MD10G1191100' => 'mdo', 'MD12G1243500' => 'mdo', 'MD13G1207000' => 'mdo', 'MD13G1207100' => 'mdo', 'MD16G1208600' => 'mdo', 'Medtr1g050352' => 'mtr', 'Medtr1g070385' => 'mtr', 'Medtr1g070450' => 'mtr', 'Medtr1g075200' => 'mtr', 'Medtr1g075250' => 'mtr', 'Medtr1g075260' => 'mtr', 'Medtr1g475250' => 'mtr', 'Medtr4g075450' => 'mtr', 'Medtr7g096300' => 'mtr', 'Medtr8g105110' => 'mtr', 'MELO3C006470.2' => 'cme', 'MELO3C006471.2' => 'cme', 'MELO3C020772.2' => 'cme', 'MELO3C026780.2' => 'cme', 'MELO3C026781.2' => 'cme', 'Migut.D00390' => 'egut', 'Migut.G00435' => 'egut', 'Migut.G00436' => 'egut', 'Migut.G00718' => 'egut', 'MSTRG.21891' => 'ama', 'MSTRG.26910' => 'ama', 'MSTRG.4099' => 'ama', 'MSTRG.9925' => 'ama', 'Nitab4.5_0000165g0010' => 'nta', 'Nitab4.5_0000209g0180' => 'nta', 'Nitab4.5_0000244g0440' => 'nta', 'Nitab4.5_0000525g0220' => 'nta', 'Nitab4.5_0001597g0020' => 'nta', 'Nitab4.5_0001878g0040' => 'nta', 'Nitab4.5_0001878g0060' => 'nta', 'Nitab4.5_0002838g0100' => 'nta', 'Nitab4.5_0002838g0120' => 'nta', 'Nitab4.5_0004798g0030' => 'nta', 'Nitab4.5_0005420g0010' => 'nta', 'Nitab4.5_0005507g0010' => 'nta', 'Nitab4.5_0005574g0020' => 'nta', 'Nitab4.5_0005838g0010' => 'nta', 'Nitab4.5_0010580g0020' => 'nta', 'Nn1g02599' => 'nnu', 'Nn1g02608' => 'nnu', 'Nn3g17742' => 'nnu', 'Nn3g19534' => 'nnu', 'Nn3g19535' => 'nnu', 'Oeu008790.1' => 'oeu', 'Oeu008792.1' => 'oeu', 'Oeu032590.1' => 'oeu', 'Oeu035349.1' => 'oeu', 'Oeu049791.1' => 'oeu', 'Os01g0774500' => 'osa', 'Os03g0628800' => 'osa', 'Os03g0798600' => 'osa', 'Os05g0508800' => 'osa', 'Peaxi162Scf00036g02018' => 'pax', 'Peaxi162Scf00578g00032' => 'pax', 'Peaxi162Scf00578g00317' => 'pax', 'Peaxi162Scf00785g00114' => 'pax', 'Peaxi162Scf00813g00119' => 'pax', 'Peaxi162Scf00906g00227' => 'pax', 'PGR004G0875' => 'pgr', 'PGR004G2424' => 'pgr', 'PGR031G1239' => 'pgr', 'PGR031G2474' => 'pgr', 'PGR044G0423' => 'pgr', 'PGSC0003DMG400001128' => 'stu', 'PGSC0003DMG400007336' => 'stu', 'PGSC0003DMG400016318' => 'stu', 'PGSC0003DMG400016319' => 'stu', 'PGSC0003DMG400018074' => 'stu', 'Phvul.001G157700' => 'pvu', 'Phvul.002G148550' => 'pvu', 'Phvul.002G320200' => 'pvu', 'Phvul.003G089200' => 'pvu', 'Phvul.007G126000' => 'pvu', 'Phvul.007G126100' => 'pvu', 'Phvul.007G178000' => 'pvu', 'Phvul.007G178200' => 'pvu', 'Potri.002G043000' => 'ptr', 'Potri.002G043200' => 'ptr', 'Potri.003G123750' => 'ptr', 'Potri.005G055401' => 'ptr', 'Potri.005G219700' => 'ptr', 'Potri.005G220000' => 'ptr', 'Potri.008G161901' => 'ptr', 'Potri.008G162000' => 'ptr', 'Potri.008G162400' => 'ptr', 'Potri.010G076900' => 'ptr', 'Pp3c12_9180' => 'ppa', 'Pp3c13_19770' => 'ppa', 'Pp3c14_22950' => 'ppa', 'Pp3c16_12160' => 'ppa', 'Pp3c27_7820' => 'ppa', 'Pp3c2_3490' => 'ppa', 'Pp3c3_23700' => 'ppa', 'Pp3c3_36520' => 'ppa', 'Pp3c4_15250' => 'ppa', 'PRCOL_00007002' => 'pco', 'Prupe.1G030600' => 'ppe', 'Prupe.1G030700' => 'ppe', 'Prupe.6G345200' => 'ppe', 'Prupe.8G230300' => 'ppe', 'Prupe.8G230500' => 'ppe', 'Psat3g059600' => 'psa', 'Psat5g200920' => 'psa', 'Psat6g056440' => 'psa', 'Psat6g057360' => 'psa', 'Psat6g134120' => 'psa', 'Psat6g134160' => 'psa', 'Psat7g008640' => 'psa', 'Psat7g185240' => 'psa', 'PSO017G1330' => 'pso', 'PSO063G6097' => 'pso', 'PSO170G0835' => 'pso', 'PSO170G2499' => 'pso', 'PSO210G5058' => 'pso', 'PSO210G6154' => 'pso', 'PSO585G0031' => 'pso', 'PSO832G0264' => 'pso', 'PSO832G4288' => 'pso', 'QL03p027355' => 'qlo', 'QL03p027430' => 'qlo', 'QL04p081380' => 'qlo', 'QL06p015642' => 'qlo', 'QL06p015650' => 'qlo', 'QL06p015686' => 'qlo', 'QL12p042927' => 'qlo', 'QL93p1863_0035' => 'qlo', 'RcHm_v2.0_Chr3g0450581' => 'rch', 'RcHm_v2.0_Chr4g0390371' => 'rch', 'RcHm_v2.0_Chr4g0390381' => 'rch', 'RcHm_v2.0_Chr4g0390491' => 'rch', 'RcHm_v2.0_Chr4g0390501' => 'rch', 'RcHm_v2.0_Chr6g0289231' => 'rch', 'Rhsim04G0190400' => 'rsi', 'Rhsim04G0190500' => 'rsi', 'Rhsim04G0190600' => 'rsi', 'Rhsim13G0031400' => 'rsi', 'Rhsim13G0165600' => 'rsi', 'RhsimUnG0114600' => 'rsi', 'RhsimUnG0114700' => 'rsi', 'Sabra02G0034800' => 'sbr', 'Sabra02G0035100' => 'sbr', 'Sabra05G0168600' => 'sbr', 'Sabra05G0168800' => 'sbr', 'Sabra08G0123700' => 'sbr', 'Sabra10G0031900' => 'sbr', 'Sabra13G0039000' => 'sbr', 'SalBow2G0782' => 'sbo', 'SalBow2G1403' => 'sbo', 'SalBow4G0074' => 'sbo', 'SalBow4G2635' => 'sbo', 'SalBow5G3010' => 'sbo', 'Sc05g0000870' => 'sci', 'Sc05g0000890' => 'sci', 'Sc13g0005000' => 'sci', 'Sc13g0005030' => 'sci', 'Sc19g0003790' => 'sci', 'Sc19g0003800' => 'sci', 'Sed0003467' => 'sed', 'Sed0009355' => 'sed', 'Sed0009894' => 'sed', 'Sed0011972' => 'sed', 'Sed0021483' => 'sed', 'Sed0021750' => 'sed', 'Sed0026279' => 'sed', 'SEGI_05312' => 'sgi', 'SEGI_10112' => 'sgi', 'SEGI_15835' => 'sgi', 'SEGI_30386' => 'sgi', 'SEGI_34122' => 'sgi', 'SEGI_35063' => 'sgi', 'SGA_v2.0_scaffold101G29794' => 'sas', 'SGA_v2.0_scaffold1G00573' => 'sas', 'SGA_v2.0_scaffold79G25637' => 'sas', 'SGA_v2.0_scaffold88G27283' => 'sas', 'SGA_v2.0_scaffold88G27285' => 'sas', 'SGA_v2.0_scaffold88G27331' => 'sas', 'SHI09937' => 'shi', 'SMO119G0302' => 'smo', 'SMO137G0231' => 'smo', 'SMO367G1151' => 'smo', 'Solyc02g082000.3' => 'sly', 'Solyc06g031670.3' => 'sly', 'Solyc06g053810.3' => 'sly', 'Solyc07g025457.1' => 'sly', 'Solyc08g059740.1' => 'sly', 'Solyc08g059750.3' => 'sly', 'Solyc09g083370.3' => 'sly', 'Solyc12g038950.3' => 'sly', 'Sopen02g026630' => 'spe', 'Sopen06g018930' => 'spe', 'Sopen06g018940' => 'spe', 'Sopen08g009460' => 'spe', 'Sopen09g032290' => 'spe', 'Sp1g03080' => 'spa', 'Sp1g03090' => 'spa', 'Sp1g05480' => 'spa', 'Sp2g07860' => 'spa', 'Sp2g08430' => 'spa', 'Sp2g08440' => 'spa', 'Sp2g26200' => 'spa', 'Sp4g13170' => 'spa', 'Sp6g33840' => 'spa', 'SpUn1204_0010' => 'spa', 'TAR365G0908' => 'tar', 'TAR381G1270' => 'tar', 'TAR381G1651' => 'tar', 'TAR625G1131' => 'tar', 'TAR633G0962' => 'tar', 'TAR633G1729' => 'tar', 'TAR633G1864' => 'tar', 'TAR636G0221' => 'tar', 'TAR636G0314' => 'tar', 'TAR636G3202' => 'tar', 'THA.LOC104800805' => 'tha', 'THA.LOC104801096' => 'tha', 'THA.LOC104801555' => 'tha', 'THA.LOC104808491' => 'tha', 'THA.LOC104808595' => 'tha', 'THA.LOC104815985' => 'tha', 'THA.LOC104822250' => 'tha', 'THA.LOC104826071' => 'tha', 'Thecc.01G265200' => 'tca', 'Thecc.01G265300' => 'tca', 'Thecc.01G265700' => 'tca', 'Thecc.03G109100' => 'tca', 'Thecc.04G245900' => 'tca', 'Thecc.04G246000' => 'tca', 'Thhalv10003334m.g' => 'esa', 'Thhalv10005508m.g' => 'esa', 'Thhalv10005643m.g' => 'esa', 'Thhalv10007316m.g' => 'esa', 'Thhalv10009006m.g' => 'esa', 'Thhalv10009309m.g' => 'esa', 'Thhalv10014917m.g' => 'esa', 'Thhalv10014919m.g' => 'esa', 'Thhalv10015393m.g' => 'esa', 'Thhalv10016515m.g' => 'esa', 'Thhalv10029242m.g' => 'esa', 'TPR.G16654' => 'tpr', 'TPR.G20589' => 'tpr', 'TPR.G23029' => 'tpr', 'TPR.G27731' => 'tpr', 'TPR.G28889' => 'tpr', 'TPR.G28899' => 'tpr', 'TPR.G30846' => 'tpr', 'TPR.G5452' => 'tpr', 'TPR.G5713' => 'tpr', 'TPR.G9046' => 'tpr', 'TPR.G9061' => 'tpr', 'TWI09G1075' => 'twi', 'TWI12G0806' => 'twi', 'TWI18G0108' => 'twi', 'TWI53G1361' => 'twi', 'TWI73G0185' => 'twi', 'TWI73G0427' => 'twi', 'unitig_37.g12001' => 'ugi', 'unitig_747.g21660' => 'ugi', 'unitig_748.g7232' => 'ugi', 'unitig_748.g7315' => 'ugi', 'unitig_85.g27262' => 'ugi', 'unitig_92.g28220' => 'ugi', 'vmacro02632' => 'vma', 'vmacro08410' => 'vma', 'vmacro08411' => 'vma', 'vmacro15407' => 'vma', 'VMungo0251G3619' => 'vmu', 'VMungo0720G1204' => 'vmu', 'VMungo0720G1918' => 'vmu', 'VMungo0720G2387' => 'vmu', 'VMungo0720G2961' => 'vmu', 'VMungo1215G2154' => 'vmu', 'VMungo1383G2411' => 'vmu', 'Zm00001eb051130' => 'zma', 'Zm00001eb116830' => 'zma', 'Zm00001eb116850' => 'zma', 'Zm00001eb151740' => 'zma', 'Zm00001eb292360' => 'zma', 'Zm00001eb301640' => 'zma' ) $gf_id = 'HOM05D000856' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000856' ) $data_identifier = 'HOM05D000856' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 13, 'ath' => (int) 10, 'atr' => (int) 1, 'acertr' => (int) 8, 'cqu' => (int) 6, 'bca' => (int) 21, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 11, 'car' => (int) 9, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 8, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 5, 'fan' => (int) 16, 'fve' => (int) 6, 'gma' => (int) 11, 'ghi' => (int) 19, 'gra' => (int) 9, 'vvi' => (int) 7, 'han' => (int) 17, 'cav' => (int) 5, 'hma' => (int) 2, 'vpl' => (int) 2, 'sun' => (int) 7, 'lal' => (int) 9, 'lja' => (int) 5, 'lonja' => (int) 9, 'lsa' => (int) 5, 'mes' => (int) 8, 'mpo' => (int) 3, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 10, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 15, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 9, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 9, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 6, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 5, 'spa' => (int) 10, 'tar' => (int) 10, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 11, 'tpr' => (int) 11, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 4, 'vmu' => (int) 7, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb301640' $species_info = array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ) $local_species = 'spa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000856', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p00010' => 'bna', 'A03p04160' => 'bna', 'A03p17160' => 'bna', 'A04p23370' => 'bna', 'A05p14860' => 'bna', 'A08p37020' => 'bna', 'A09p08050' => 'bna', 'A09p66800' => 'bna', 'A09p67940' => 'bna', 'A10p02680' => 'bna', 'A10p05320' => 'bna', 'Aa31LG1G20560' => 'aar', 'Aa31LG1G20610' => 'aar', 'Aa31LG1G7810' => 'aar', 'Aa31LG5G3590' => 'aar', 'Aa31LG5G6140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3819' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4683' => 'aag', 'Actinidia04480' => 'ach', 'Actinidia05466' => 'ach', 'Actinidia08445' => 'ach', 'Actinidia21170' => 'ach', 'Actinidia24812' => 'ach', 'Actinidia24951' => 'ach', 'Actinidia40088' => 'ach', 'Ah.02g111660' => 'amhyb', 'Ah.11g048900' => 'amhyb', 'Ah.11g049910' => 'amhyb', 'AL1G13870' => 'aly', 'AL1G13880' => 'aly', 'AL1G16760' => 'aly', 'AL390U10020' => 'aly', 'AL4G25520' => 'aly', 'AL6G19890' => 'aly', 'AL6G19900' => 'aly', 'AL6G19910' => 'aly', 'AL8G40100' => 'aly', 'Aqoxy2G03562' => 'aox', 'Aqoxy5G00316' => 'aox', 'Aqoxy5G00926' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1628KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1H403S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2FU6SJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.882I6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8YRY2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YN1SN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AF70II' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZA8L1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F916KL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHRD8H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KTZ8QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S22EMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8M29T' => 'arhy', 'AT1G04270' => 'ath', 'AT1G04280' => 'ath', 'AT1G06750' => 'ath', 'AT1G33850' => 'ath', 'AT2G30630' => 'ath', 'AT5G09490' => 'ath', 'AT5G09500' => 'ath', 'AT5G09510' => 'ath', 'AT5G43640' => 'ath', 'AT5G63070' => 'ath', 'ATR0605G315' => 'atr', 'Atru.chr11.175' => 'acertr', 'Atru.chr11.653' => 'acertr', 'Atru.chr3.1616' => 'acertr', 'Atru.chr4.2230' => 'acertr', 'Atru.chr4.2232' => 'acertr', 'Atru.chr5.1598' => 'acertr', 'Atru.chr5.1600' => 'acertr', 'Atru.chr5.2188' => 'acertr', 'AUR62008326' => 'cqu', 'AUR62011922' => 'cqu', 'AUR62011924' => 'cqu', 'AUR62021771' => 'cqu', 'AUR62032237' => 'cqu', 'AUR62032240' => 'cqu', 'BcaB01g05572' => 'bca', 'BcaB02g10337' => 'bca', 'BcaB04g19944' => 'bca', 'BcaB05g21548' => 'bca', 'BcaB05g21549' => 'bca', 'BcaB05g23227' => 'bca', 'BcaB06g26256' => 'bca', 'BcaB06g26257' => 'bca', 'BcaB06g28379' => 'bca', 'BcaC02g11159' => 'bca', 'BcaC03g13258' => 'bca', 'BcaC03g13259' => 'bca', 'BcaC05g24456' => 'bca', 'BcaC05g24457' => 'bca', 'BcaC07g36922' => 'bca', 'BcaC07g36923' => 'bca', 'BcaC07g42050' => 'bca', 'BcaC07g42176' => 'bca', 'BcaC07g42195' => 'bca', 'BcaC07g42196' => 'bca', 'BcaNung06674' => 'bca', 'BolC2t06351H' => 'bol', 'BolC2t06352H' => 'bol', 'BolC3t12993H' => 'bol', 'BolC4t23525H' => 'bol', 'BolC4t27475H' => 'bol', 'BolC5t29025H' => 'bol', 'BolC5t29026H' => 'bol', 'BolC8t46898H' => 'bol', 'BolC8t46899H' => 'bol', 'BolC8t52630H' => 'bol', 'BolC8t52765H' => 'bol', 'BolC9t53824H' => 'bol', 'BraA03t09760Z' => 'bra', 'BraA03t10990Z' => 'bra', 'BraA05t20413Z' => 'bra', 'BraA08t35602Z' => 'bra', 'BraA09t36458Z' => 'bra', 'BraA09t42018Z' => 'bra', 'BraA09t42129Z' => 'bra', 'BraA10t42536Z' => 'bra', 'BraA10t42537Z' => 'bra', 'C01p10690' => 'bna', 'C02p03890' => 'bna', 'C02p03900' => 'bna', 'C03p04620' => 'bna', 'C04p19870' => 'bna', 'C04p59670' => 'bna', 'C05p02460' => 'bna', 'C05p02470' => 'bna', 'C08p00980' => 'bna', 'C08p00990' => 'bna', 'C08p51030' => 'bna', 'C08p52360' => 'bna', 'C09p09120' => 'bna', 'CAN.G19.15' => 'can', 'CAN.G251.10' => 'can', 'CAN.G251.9' => 'can', 'CAN.G398.24' => 'can', 'CAN.G410.32' => 'can', 'CAN.G881.2' => 'can', 'CANSAT01G3025' => 'cansat', 'CANSAT78G1211' => 'cansat', 'CANSAT78G1218' => 'cansat', 'CANSAT78G1521' => 'cansat', 'CANSAT78G1670' => 'cansat', 'CARHR003600' => 'chi', 'CARHR003610' => 'chi', 'CARHR006290' => 'chi', 'CARHR006430' => 'chi', 'CARHR124110' => 'chi', 'CARHR203870' => 'chi', 'CARHR203880' => 'chi', 'CARHR203890' => 'chi', 'CARHR276880' => 'chi', 'Carub.0001s0346' => 'cru', 'Carub.0001s0347' => 'cru', 'Carub.0001s0607' => 'cru', 'Carub.0003s2768' => 'cru', 'Carub.0003s2769' => 'cru', 'Carub.0004s1178' => 'cru', 'Carub.0006s0806' => 'cru', 'Carub.0006s0807' => 'cru', 'Carub.0006s0808' => 'cru', 'Carub.0008s0501' => 'cru', 'Carub.0008s2379' => 'cru', 'Ca_08655_v3' => 'car', 'Ca_08922_v3' => 'car', 'Ca_08923_v3' => 'car', 'Ca_09119_v3' => 'car', 'Ca_09703_v3' => 'car', 'Ca_09705_v3' => 'car', 'Ca_09835_v3' => 'car', 'Ca_26403_v3' => 'car', 'Ca_30719_v3' => 'car', 'CBR_g17958' => 'cbr', 'CBR_g40516' => 'cbr', 'Cc00_g05350' => 'ccan', 'Cc01_g18690' => 'ccan', 'Cc03_g04830' => 'ccan', 'Cc03_g04850' => 'ccan', 'CDE02G4469' => 'cde', 'CDE06G0883' => 'cde', 'CDE06G1295' => 'cde', 'CDE06G1390' => 'cde', 'CDE07G0584' => 'cde', 'CDE07G1084' => 'cde', 'CDE08G1259' => 'cde', 'Cfa002341' => 'cfa', 'Cfa024337' => 'cfa', 'Ciclev10004749m.g' => 'ccl', 'Ciclev10006127m.g' => 'ccl', 'Ciclev10019720m.g' => 'ccl', 'Ciclev10022652m.g' => 'ccl', 'CiPaw.01G190400' => 'cil', 'CiPaw.01G190500' => 'cil', 'CiPaw.02G116400' => 'cil', 'CiPaw.02G116500' => 'cil', 'CiPaw.04G183000' => 'cil', 'CiPaw.04G183300' => 'cil', 'ClCG05G004610' => 'cla', 'ClCG05G004620' => 'cla', 'ClCG06G006730' => 'cla', 'ClCG06G006740' => 'cla', 'ClCG11G003690' => 'cla', 'COL.COLO4_08276' => 'col', 'COL.COLO4_08277' => 'col', 'COL.COLO4_15787' => 'col', 'COL.COLO4_15789' => 'col', 'Cpa.g.c44815' => 'cpa', 'Cpa.g.sc52.144' => 'cpa', 'Cpa.g.sc58.46' => 'cpa', 'Cpa.g.sc58.47' => 'cpa', 'Cre08.g360900' => 'cre', 'CsaV3_2G013030' => 'csa', 'CsaV3_2G013050' => 'csa', 'CsaV3_2G015620' => 'csa', 'CsaV3_3G012590' => 'csa', 'CsaV3_3G012600' => 'csa', 'CSS0001641' => 'camsi', 'CSS0008310' => 'camsi', 'CSS0013011' => 'camsi', 'CSS0017147' => 'camsi', 'CSS0022970' => 'camsi', 'CSS0025655' => 'camsi', 'CSS0028665' => 'camsi', 'CSS0029117' => 'camsi', 'CSS0032024' => 'camsi', 'CSS0039681' => 'camsi', 'CSS0046516' => 'camsi', 'CSS0050307' => 'camsi', 'DCAR_005871' => 'dca', 'DCAR_007342' => 'dca', 'DCAR_024228' => 'dca', 'DCAR_027277' => 'dca', 'DCAR_030718' => 'dca', 'Dinv20287' => 'din', 'Dinv22461' => 'din', 'Dinv22464' => 'din', 'Dinv29912' => 'din', 'Dinv29913' => 'din', 'Dinv34580' => 'din', 'Dinv34582' => 'din', 'Dinv44632' => 'din', 'Duzib052G0266' => 'dzi', 'Duzib133G0907' => 'dzi', 'Duzib133G1034' => 'dzi', 'Duzib138G0207' => 'dzi', 'Duzib138G0491' => 'dzi', 'Duzib151G0812' => 'dzi', 'Duzib151G1166' => 'dzi', 'Duzib168G0192' => 'dzi', 'Duzib211G0077' => 'dzi', 'Duzib212G0429' => 'dzi', 'Duzib212G0472' => 'dzi', 'ECA233G2617' => 'eca', 'ECA236G4188' => 'eca', 'ECA240G0936' => 'eca', 'ECA240G1129' => 'eca', 'ECA247G0623' => 'eca', 'EL10Ac5g10451' => 'bvu', 'EL10Ac5g10453' => 'bvu', 'EL10Ac5g10894' => 'bvu', 'Eucgr.H00192' => 'egr', 'Eucgr.H00193' => 'egr', 'Eucgr.H00194' => 'egr', 'Eucgr.J01562' => 'egr', 'Eucgr.K03301' => 'egr', 'FAN02G0632' => 'fan', 'FAN05G5378' => 'fan', 'FAN09G3247' => 'fan', 'FAN12G0435' => 'fan', 'FAN12G2426' => 'fan', 'FAN14G1707' => 'fan', 'FAN14G4725' => 'fan', 'FAN15G2071' => 'fan', 'FAN17G3065' => 'fan', 'FAN19G1376' => 'fan', 'FAN20G0354' => 'fan', 'FAN20G2429' => 'fan', 'FAN20G2658' => 'fan', 'FAN24G2343' => 'fan', 'FAN27G2362' => 'fan', 'FAN28G1765' => 'fan', 'FvH4_1g16020' => 'fve', 'FvH4_2g04890' => 'fve', 'FvH4_2g22270' => 'fve', 'FvH4_4g02630' => 'fve', 'FvH4_4g02640' => 'fve', 'FvH4_6g02650' => 'fve', 'Glyma.02G140600' => 'gma', 'Glyma.03G159900' => 'gma', 'Glyma.05G234800' => 'gma', 'Glyma.07G269600' => 'gma', 'Glyma.08G042300' => 'gma', 'Glyma.10G033500' => 'gma', 'Glyma.10G185200' => 'gma', 'Glyma.17G004300' => 'gma', 'Glyma.19G161900' => 'gma', 'Glyma.20G205100' => 'gma', 'Glyma.20G205200' => 'gma', 'Gohir.A01G139101' => 'ghi', 'Gohir.A02G035600' => 'ghi', 'Gohir.A02G117901' => 'ghi', 'Gohir.A07G210100' => 'ghi', 'Gohir.A07G210200' => 'ghi', 'Gohir.A08G061100' => 'ghi', 'Gohir.A09G223000' => 'ghi', 'Gohir.A09G223100' => 'ghi', 'Gohir.A10G113900' => 'ghi', 'Gohir.A10G114000' => 'ghi', 'Gohir.D02G042300' => 'ghi', 'Gohir.D07G216100' => 'ghi', 'Gohir.D07G216200' => 'ghi', 'Gohir.D08G070400' => 'ghi', 'Gohir.D09G225000' => 'ghi', 'Gohir.D09G225100' => 'ghi', 'Gohir.D10G152300' => 'ghi', 'Gohir.D10G153200' => 'ghi', 'Gohir.D11G133701' => 'ghi', 'Gorai.004G074100' => 'gra', 'Gorai.005G046800' => 'gra', 'Gorai.006G246500' => 'gra', 'Gorai.006G246600' => 'gra', 'Gorai.007G142900' => 'gra', 'Gorai.011G171000' => 'gra', 'Gorai.011G171100' => 'gra', 'Gorai.013G104300' => 'gra', 'Gorai.013G104400' => 'gra', 'GSVIVG01000754001' => 'vvi', 'GSVIVG01000756001' => 'vvi', 'GSVIVG01010903001' => 'vvi', 'GSVIVG01017623001' => 'vvi', 'GSVIVG01018113001' => 'vvi', 'GSVIVG01018116001' => 'vvi', 'GSVIVG01018118001' => 'vvi', 'HanXRQChr03g0076211' => 'han', 'HanXRQChr03g0092431' => 'han', 'HanXRQChr03g0092441' => 'han', 'HanXRQChr03g0092591' => 'han', 'HanXRQChr03g0092671' => 'han', 'HanXRQChr03g0092681' => 'han', 'HanXRQChr03g0092691' => 'han', 'HanXRQChr03g0092701' => 'han', 'HanXRQChr03g0092721' => 'han', 'HanXRQChr03g0092731' => 'han', 'HanXRQChr04g0113681' => 'han', 'HanXRQChr10g0281371' => 'han', 'HanXRQChr11g0337141' => 'han', 'HanXRQChr13g0424521' => 'han', 'HanXRQChr13g0424531' => 'han', 'HanXRQChr13g0424541' => 'han', 'HanXRQChr16g0498221' => 'han', 'Haze_04377' => 'cav', 'Haze_11298' => 'cav', 'Haze_24547' => 'cav', 'Haze_24550' => 'cav', 'Haze_26587' => 'cav', 'Hma1.2p1_0650F.1_g195410' => 'hma', 'Hma1.2p1_0893F.1_g233470' => 'hma', 'HPP92_006508' => 'vpl', 'HPP92_024780' => 'vpl', 'Hund02688' => 'sun', 'Hund09380' => 'sun', 'Hund09381' => 'sun', 'Hund09832' => 'sun', 'Hund09833' => 'sun', 'Hund11351' => 'sun', 'Hund11513' => 'sun', 'Lalb_Chr06g0162591' => 'lal', 'Lalb_Chr06g0162601' => 'lal', 'Lalb_Chr06g0169321' => 'lal', 'Lalb_Chr09g0330951' => 'lal', 'Lalb_Chr16g0387631' => 'lal', 'Lalb_Chr21g0306241' => 'lal', 'Lalb_Chr25g0290051' => 'lal', 'Lalb_Chr25g0290061' => 'lal', 'Lalb_Chr25g0290071' => 'lal', 'Lj1g0003876' => 'lja', 'Lj1P1207T36' => 'lonja', 'Lj2C1156G12' => 'lonja', 'Lj3A793G39' => 'lonja', 'Lj3C580G2' => 'lonja', 'Lj3C780G2' => 'lonja', 'Lj3C780T4' => 'lonja', 'Lj3C793G9' => 'lonja', 'Lj4g0012960' => 'lja', 'Lj5g0021252' => 'lja', 'Lj5g0021484' => 'lja', 'Lj5g0024528' => 'lja', 'Lj6A399T12' => 'lonja', 'Lj6A656G65' => 'lonja', 'Lsat_1_v5_gn_3_125500' => 'lsa', 'Lsat_1_v5_gn_3_125540' => 'lsa', 'Lsat_1_v5_gn_5_72701' => 'lsa', 'Lsat_1_v5_gn_8_91560' => 'lsa', 'Lsat_1_v5_gn_9_9640' => 'lsa', 'Manes.01G200600' => 'mes', 'Manes.01G200700' => 'mes', 'Manes.03G168900' => 'mes', 'Manes.03G169000' => 'mes', 'Manes.05G085801' => 'mes', 'Manes.05G086200' => 'mes', 'Manes.15G036700' => 'mes', 'Manes.15G036900' => 'mes', 'Mapoly0004s0172' => 'mpo', 'Mapoly0023s0001' => 'mpo', 'Mapoly0142s0012' => 'mpo', 'MBI01_g32854_MAGBIO' => 'mbi', 'MBI11_g24427_MAGBIO' => 'mbi', 'MBI11_g47319_MAGBIO' => 'mbi', 'MCO01G433' => 'mco', 'MD00G1187800' => 'mdo', 'MD04G1226500' => 'mdo', 'MD05G1203900' => 'mdo', 'MD10G1191100' => 'mdo', 'MD12G1243500' => 'mdo', 'MD13G1207000' => 'mdo', 'MD13G1207100' => 'mdo', 'MD16G1208600' => 'mdo', 'Medtr1g050352' => 'mtr', 'Medtr1g070385' => 'mtr', 'Medtr1g070450' => 'mtr', 'Medtr1g075200' => 'mtr', 'Medtr1g075250' => 'mtr', 'Medtr1g075260' => 'mtr', 'Medtr1g475250' => 'mtr', 'Medtr4g075450' => 'mtr', 'Medtr7g096300' => 'mtr', 'Medtr8g105110' => 'mtr', 'MELO3C006470.2' => 'cme', 'MELO3C006471.2' => 'cme', 'MELO3C020772.2' => 'cme', 'MELO3C026780.2' => 'cme', 'MELO3C026781.2' => 'cme', 'Migut.D00390' => 'egut', 'Migut.G00435' => 'egut', 'Migut.G00436' => 'egut', 'Migut.G00718' => 'egut', 'MSTRG.21891' => 'ama', 'MSTRG.26910' => 'ama', 'MSTRG.4099' => 'ama', 'MSTRG.9925' => 'ama', 'Nitab4.5_0000165g0010' => 'nta', 'Nitab4.5_0000209g0180' => 'nta', 'Nitab4.5_0000244g0440' => 'nta', 'Nitab4.5_0000525g0220' => 'nta', 'Nitab4.5_0001597g0020' => 'nta', 'Nitab4.5_0001878g0040' => 'nta', 'Nitab4.5_0001878g0060' => 'nta', 'Nitab4.5_0002838g0100' => 'nta', 'Nitab4.5_0002838g0120' => 'nta', 'Nitab4.5_0004798g0030' => 'nta', 'Nitab4.5_0005420g0010' => 'nta', 'Nitab4.5_0005507g0010' => 'nta', 'Nitab4.5_0005574g0020' => 'nta', 'Nitab4.5_0005838g0010' => 'nta', 'Nitab4.5_0010580g0020' => 'nta', 'Nn1g02599' => 'nnu', 'Nn1g02608' => 'nnu', 'Nn3g17742' => 'nnu', 'Nn3g19534' => 'nnu', 'Nn3g19535' => 'nnu', 'Oeu008790.1' => 'oeu', 'Oeu008792.1' => 'oeu', 'Oeu032590.1' => 'oeu', 'Oeu035349.1' => 'oeu', 'Oeu049791.1' => 'oeu', 'Os01g0774500' => 'osa', 'Os03g0628800' => 'osa', 'Os03g0798600' => 'osa', 'Os05g0508800' => 'osa', 'Peaxi162Scf00036g02018' => 'pax', 'Peaxi162Scf00578g00032' => 'pax', 'Peaxi162Scf00578g00317' => 'pax', 'Peaxi162Scf00785g00114' => 'pax', 'Peaxi162Scf00813g00119' => 'pax', 'Peaxi162Scf00906g00227' => 'pax', 'PGR004G0875' => 'pgr', 'PGR004G2424' => 'pgr', 'PGR031G1239' => 'pgr', 'PGR031G2474' => 'pgr', 'PGR044G0423' => 'pgr', 'PGSC0003DMG400001128' => 'stu', 'PGSC0003DMG400007336' => 'stu', 'PGSC0003DMG400016318' => 'stu', 'PGSC0003DMG400016319' => 'stu', 'PGSC0003DMG400018074' => 'stu', 'Phvul.001G157700' => 'pvu', 'Phvul.002G148550' => 'pvu', 'Phvul.002G320200' => 'pvu', 'Phvul.003G089200' => 'pvu', 'Phvul.007G126000' => 'pvu', 'Phvul.007G126100' => 'pvu', 'Phvul.007G178000' => 'pvu', 'Phvul.007G178200' => 'pvu', 'Potri.002G043000' => 'ptr', 'Potri.002G043200' => 'ptr', 'Potri.003G123750' => 'ptr', 'Potri.005G055401' => 'ptr', 'Potri.005G219700' => 'ptr', 'Potri.005G220000' => 'ptr', 'Potri.008G161901' => 'ptr', 'Potri.008G162000' => 'ptr', 'Potri.008G162400' => 'ptr', 'Potri.010G076900' => 'ptr', 'Pp3c12_9180' => 'ppa', 'Pp3c13_19770' => 'ppa', 'Pp3c14_22950' => 'ppa', 'Pp3c16_12160' => 'ppa', 'Pp3c27_7820' => 'ppa', 'Pp3c2_3490' => 'ppa', 'Pp3c3_23700' => 'ppa', 'Pp3c3_36520' => 'ppa', 'Pp3c4_15250' => 'ppa', 'PRCOL_00007002' => 'pco', 'Prupe.1G030600' => 'ppe', 'Prupe.1G030700' => 'ppe', 'Prupe.6G345200' => 'ppe', 'Prupe.8G230300' => 'ppe', 'Prupe.8G230500' => 'ppe', 'Psat3g059600' => 'psa', 'Psat5g200920' => 'psa', 'Psat6g056440' => 'psa', 'Psat6g057360' => 'psa', 'Psat6g134120' => 'psa', 'Psat6g134160' => 'psa', 'Psat7g008640' => 'psa', 'Psat7g185240' => 'psa', 'PSO017G1330' => 'pso', 'PSO063G6097' => 'pso', 'PSO170G0835' => 'pso', 'PSO170G2499' => 'pso', 'PSO210G5058' => 'pso', 'PSO210G6154' => 'pso', 'PSO585G0031' => 'pso', 'PSO832G0264' => 'pso', 'PSO832G4288' => 'pso', 'QL03p027355' => 'qlo', 'QL03p027430' => 'qlo', 'QL04p081380' => 'qlo', 'QL06p015642' => 'qlo', 'QL06p015650' => 'qlo', 'QL06p015686' => 'qlo', 'QL12p042927' => 'qlo', 'QL93p1863_0035' => 'qlo', 'RcHm_v2.0_Chr3g0450581' => 'rch', 'RcHm_v2.0_Chr4g0390371' => 'rch', 'RcHm_v2.0_Chr4g0390381' => 'rch', 'RcHm_v2.0_Chr4g0390491' => 'rch', 'RcHm_v2.0_Chr4g0390501' => 'rch', 'RcHm_v2.0_Chr6g0289231' => 'rch', 'Rhsim04G0190400' => 'rsi', 'Rhsim04G0190500' => 'rsi', 'Rhsim04G0190600' => 'rsi', 'Rhsim13G0031400' => 'rsi', 'Rhsim13G0165600' => 'rsi', 'RhsimUnG0114600' => 'rsi', 'RhsimUnG0114700' => 'rsi', 'Sabra02G0034800' => 'sbr', 'Sabra02G0035100' => 'sbr', 'Sabra05G0168600' => 'sbr', 'Sabra05G0168800' => 'sbr', 'Sabra08G0123700' => 'sbr', 'Sabra10G0031900' => 'sbr', 'Sabra13G0039000' => 'sbr', 'SalBow2G0782' => 'sbo', 'SalBow2G1403' => 'sbo', 'SalBow4G0074' => 'sbo', 'SalBow4G2635' => 'sbo', 'SalBow5G3010' => 'sbo', 'Sc05g0000870' => 'sci', 'Sc05g0000890' => 'sci', 'Sc13g0005000' => 'sci', 'Sc13g0005030' => 'sci', 'Sc19g0003790' => 'sci', 'Sc19g0003800' => 'sci', 'Sed0003467' => 'sed', 'Sed0009355' => 'sed', 'Sed0009894' => 'sed', 'Sed0011972' => 'sed', 'Sed0021483' => 'sed', 'Sed0021750' => 'sed', 'Sed0026279' => 'sed', 'SEGI_05312' => 'sgi', 'SEGI_10112' => 'sgi', 'SEGI_15835' => 'sgi', 'SEGI_30386' => 'sgi', 'SEGI_34122' => 'sgi', 'SEGI_35063' => 'sgi', 'SGA_v2.0_scaffold101G29794' => 'sas', 'SGA_v2.0_scaffold1G00573' => 'sas', 'SGA_v2.0_scaffold79G25637' => 'sas', 'SGA_v2.0_scaffold88G27283' => 'sas', 'SGA_v2.0_scaffold88G27285' => 'sas', 'SGA_v2.0_scaffold88G27331' => 'sas', 'SHI09937' => 'shi', 'SMO119G0302' => 'smo', 'SMO137G0231' => 'smo', 'SMO367G1151' => 'smo', 'Solyc02g082000.3' => 'sly', 'Solyc06g031670.3' => 'sly', 'Solyc06g053810.3' => 'sly', 'Solyc07g025457.1' => 'sly', 'Solyc08g059740.1' => 'sly', 'Solyc08g059750.3' => 'sly', 'Solyc09g083370.3' => 'sly', 'Solyc12g038950.3' => 'sly', 'Sopen02g026630' => 'spe', 'Sopen06g018930' => 'spe', 'Sopen06g018940' => 'spe', 'Sopen08g009460' => 'spe', 'Sopen09g032290' => 'spe', 'Sp1g03080' => 'spa', 'Sp1g03090' => 'spa', 'Sp1g05480' => 'spa', 'Sp2g07860' => 'spa', 'Sp2g08430' => 'spa', 'Sp2g08440' => 'spa', 'Sp2g26200' => 'spa', 'Sp4g13170' => 'spa', 'Sp6g33840' => 'spa', 'SpUn1204_0010' => 'spa', 'TAR365G0908' => 'tar', 'TAR381G1270' => 'tar', 'TAR381G1651' => 'tar', 'TAR625G1131' => 'tar', 'TAR633G0962' => 'tar', 'TAR633G1729' => 'tar', 'TAR633G1864' => 'tar', 'TAR636G0221' => 'tar', 'TAR636G0314' => 'tar', 'TAR636G3202' => 'tar', 'THA.LOC104800805' => 'tha', 'THA.LOC104801096' => 'tha', 'THA.LOC104801555' => 'tha', 'THA.LOC104808491' => 'tha', 'THA.LOC104808595' => 'tha', 'THA.LOC104815985' => 'tha', 'THA.LOC104822250' => 'tha', 'THA.LOC104826071' => 'tha', 'Thecc.01G265200' => 'tca', 'Thecc.01G265300' => 'tca', 'Thecc.01G265700' => 'tca', 'Thecc.03G109100' => 'tca', 'Thecc.04G245900' => 'tca', 'Thecc.04G246000' => 'tca', 'Thhalv10003334m.g' => 'esa', 'Thhalv10005508m.g' => 'esa', 'Thhalv10005643m.g' => 'esa', 'Thhalv10007316m.g' => 'esa', 'Thhalv10009006m.g' => 'esa', 'Thhalv10009309m.g' => 'esa', 'Thhalv10014917m.g' => 'esa', 'Thhalv10014919m.g' => 'esa', 'Thhalv10015393m.g' => 'esa', 'Thhalv10016515m.g' => 'esa', 'Thhalv10029242m.g' => 'esa', 'TPR.G16654' => 'tpr', 'TPR.G20589' => 'tpr', 'TPR.G23029' => 'tpr', 'TPR.G27731' => 'tpr', 'TPR.G28889' => 'tpr', 'TPR.G28899' => 'tpr', 'TPR.G30846' => 'tpr', 'TPR.G5452' => 'tpr', 'TPR.G5713' => 'tpr', 'TPR.G9046' => 'tpr', 'TPR.G9061' => 'tpr', 'TWI09G1075' => 'twi', 'TWI12G0806' => 'twi', 'TWI18G0108' => 'twi', 'TWI53G1361' => 'twi', 'TWI73G0185' => 'twi', 'TWI73G0427' => 'twi', 'unitig_37.g12001' => 'ugi', 'unitig_747.g21660' => 'ugi', 'unitig_748.g7232' => 'ugi', 'unitig_748.g7315' => 'ugi', 'unitig_85.g27262' => 'ugi', 'unitig_92.g28220' => 'ugi', 'vmacro02632' => 'vma', 'vmacro08410' => 'vma', 'vmacro08411' => 'vma', 'vmacro15407' => 'vma', 'VMungo0251G3619' => 'vmu', 'VMungo0720G1204' => 'vmu', 'VMungo0720G1918' => 'vmu', 'VMungo0720G2387' => 'vmu', 'VMungo0720G2961' => 'vmu', 'VMungo1215G2154' => 'vmu', 'VMungo1383G2411' => 'vmu', 'Zm00001eb051130' => 'zma', 'Zm00001eb116830' => 'zma', 'Zm00001eb116850' => 'zma', 'Zm00001eb151740' => 'zma', 'Zm00001eb292360' => 'zma', 'Zm00001eb301640' => 'zma' ), 'gf_id' => 'HOM05D000856', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000856' ), 'data_identifier' => 'HOM05D000856', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000856', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p00010' => 'bna', 'A03p04160' => 'bna', 'A03p17160' => 'bna', 'A04p23370' => 'bna', 'A05p14860' => 'bna', 'A08p37020' => 'bna', 'A09p08050' => 'bna', 'A09p66800' => 'bna', 'A09p67940' => 'bna', 'A10p02680' => 'bna', 'A10p05320' => 'bna', 'Aa31LG1G20560' => 'aar', 'Aa31LG1G20610' => 'aar', 'Aa31LG1G7810' => 'aar', 'Aa31LG5G3590' => 'aar', 'Aa31LG5G6140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3819' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4683' => 'aag', 'Actinidia04480' => 'ach', 'Actinidia05466' => 'ach', 'Actinidia08445' => 'ach', 'Actinidia21170' => 'ach', 'Actinidia24812' => 'ach', 'Actinidia24951' => 'ach', 'Actinidia40088' => 'ach', 'Ah.02g111660' => 'amhyb', 'Ah.11g048900' => 'amhyb', 'Ah.11g049910' => 'amhyb', 'AL1G13870' => 'aly', 'AL1G13880' => 'aly', 'AL1G16760' => 'aly', 'AL390U10020' => 'aly', 'AL4G25520' => 'aly', 'AL6G19890' => 'aly', 'AL6G19900' => 'aly', 'AL6G19910' => 'aly', 'AL8G40100' => 'aly', 'Aqoxy2G03562' => 'aox', 'Aqoxy5G00316' => 'aox', 'Aqoxy5G00926' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1628KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1H403S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2FU6SJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.882I6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8YRY2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YN1SN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AF70II' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZA8L1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F916KL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHRD8H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KTZ8QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S22EMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8M29T' => 'arhy', 'AT1G04270' => 'ath', 'AT1G04280' => 'ath', 'AT1G06750' => 'ath', 'AT1G33850' => 'ath', 'AT2G30630' => 'ath', 'AT5G09490' => 'ath', 'AT5G09500' => 'ath', 'AT5G09510' => 'ath', 'AT5G43640' => 'ath', 'AT5G63070' => 'ath', 'ATR0605G315' => 'atr', 'Atru.chr11.175' => 'acertr', 'Atru.chr11.653' => 'acertr', 'Atru.chr3.1616' => 'acertr', 'Atru.chr4.2230' => 'acertr', 'Atru.chr4.2232' => 'acertr', 'Atru.chr5.1598' => 'acertr', 'Atru.chr5.1600' => 'acertr', 'Atru.chr5.2188' => 'acertr', 'AUR62008326' => 'cqu', 'AUR62011922' => 'cqu', 'AUR62011924' => 'cqu', 'AUR62021771' => 'cqu', 'AUR62032237' => 'cqu', 'AUR62032240' => 'cqu', 'BcaB01g05572' => 'bca', 'BcaB02g10337' => 'bca', 'BcaB04g19944' => 'bca', 'BcaB05g21548' => 'bca', 'BcaB05g21549' => 'bca', 'BcaB05g23227' => 'bca', 'BcaB06g26256' => 'bca', 'BcaB06g26257' => 'bca', 'BcaB06g28379' => 'bca', 'BcaC02g11159' => 'bca', 'BcaC03g13258' => 'bca', 'BcaC03g13259' => 'bca', 'BcaC05g24456' => 'bca', 'BcaC05g24457' => 'bca', 'BcaC07g36922' => 'bca', 'BcaC07g36923' => 'bca', 'BcaC07g42050' => 'bca', 'BcaC07g42176' => 'bca', 'BcaC07g42195' => 'bca', 'BcaC07g42196' => 'bca', 'BcaNung06674' => 'bca', 'BolC2t06351H' => 'bol', 'BolC2t06352H' => 'bol', 'BolC3t12993H' => 'bol', 'BolC4t23525H' => 'bol', 'BolC4t27475H' => 'bol', 'BolC5t29025H' => 'bol', 'BolC5t29026H' => 'bol', 'BolC8t46898H' => 'bol', 'BolC8t46899H' => 'bol', 'BolC8t52630H' => 'bol', 'BolC8t52765H' => 'bol', 'BolC9t53824H' => 'bol', 'BraA03t09760Z' => 'bra', 'BraA03t10990Z' => 'bra', 'BraA05t20413Z' => 'bra', 'BraA08t35602Z' => 'bra', 'BraA09t36458Z' => 'bra', 'BraA09t42018Z' => 'bra', 'BraA09t42129Z' => 'bra', 'BraA10t42536Z' => 'bra', 'BraA10t42537Z' => 'bra', 'C01p10690' => 'bna', 'C02p03890' => 'bna', 'C02p03900' => 'bna', 'C03p04620' => 'bna', 'C04p19870' => 'bna', 'C04p59670' => 'bna', 'C05p02460' => 'bna', 'C05p02470' => 'bna', 'C08p00980' => 'bna', 'C08p00990' => 'bna', 'C08p51030' => 'bna', 'C08p52360' => 'bna', 'C09p09120' => 'bna', 'CAN.G19.15' => 'can', 'CAN.G251.10' => 'can', 'CAN.G251.9' => 'can', 'CAN.G398.24' => 'can', 'CAN.G410.32' => 'can', 'CAN.G881.2' => 'can', 'CANSAT01G3025' => 'cansat', 'CANSAT78G1211' => 'cansat', 'CANSAT78G1218' => 'cansat', 'CANSAT78G1521' => 'cansat', 'CANSAT78G1670' => 'cansat', 'CARHR003600' => 'chi', 'CARHR003610' => 'chi', 'CARHR006290' => 'chi', 'CARHR006430' => 'chi', 'CARHR124110' => 'chi', 'CARHR203870' => 'chi', 'CARHR203880' => 'chi', 'CARHR203890' => 'chi', 'CARHR276880' => 'chi', 'Carub.0001s0346' => 'cru', 'Carub.0001s0347' => 'cru', 'Carub.0001s0607' => 'cru', 'Carub.0003s2768' => 'cru', 'Carub.0003s2769' => 'cru', 'Carub.0004s1178' => 'cru', 'Carub.0006s0806' => 'cru', 'Carub.0006s0807' => 'cru', 'Carub.0006s0808' => 'cru', 'Carub.0008s0501' => 'cru', 'Carub.0008s2379' => 'cru', 'Ca_08655_v3' => 'car', 'Ca_08922_v3' => 'car', 'Ca_08923_v3' => 'car', 'Ca_09119_v3' => 'car', 'Ca_09703_v3' => 'car', 'Ca_09705_v3' => 'car', 'Ca_09835_v3' => 'car', 'Ca_26403_v3' => 'car', 'Ca_30719_v3' => 'car', 'CBR_g17958' => 'cbr', 'CBR_g40516' => 'cbr', 'Cc00_g05350' => 'ccan', 'Cc01_g18690' => 'ccan', 'Cc03_g04830' => 'ccan', 'Cc03_g04850' => 'ccan', 'CDE02G4469' => 'cde', 'CDE06G0883' => 'cde', 'CDE06G1295' => 'cde', 'CDE06G1390' => 'cde', 'CDE07G0584' => 'cde', 'CDE07G1084' => 'cde', 'CDE08G1259' => 'cde', 'Cfa002341' => 'cfa', 'Cfa024337' => 'cfa', 'Ciclev10004749m.g' => 'ccl', 'Ciclev10006127m.g' => 'ccl', 'Ciclev10019720m.g' => 'ccl', 'Ciclev10022652m.g' => 'ccl', 'CiPaw.01G190400' => 'cil', 'CiPaw.01G190500' => 'cil', 'CiPaw.02G116400' => 'cil', 'CiPaw.02G116500' => 'cil', 'CiPaw.04G183000' => 'cil', 'CiPaw.04G183300' => 'cil', 'ClCG05G004610' => 'cla', 'ClCG05G004620' => 'cla', 'ClCG06G006730' => 'cla', 'ClCG06G006740' => 'cla', 'ClCG11G003690' => 'cla', 'COL.COLO4_08276' => 'col', 'COL.COLO4_08277' => 'col', 'COL.COLO4_15787' => 'col', 'COL.COLO4_15789' => 'col', 'Cpa.g.c44815' => 'cpa', 'Cpa.g.sc52.144' => 'cpa', 'Cpa.g.sc58.46' => 'cpa', 'Cpa.g.sc58.47' => 'cpa', 'Cre08.g360900' => 'cre', 'CsaV3_2G013030' => 'csa', 'CsaV3_2G013050' => 'csa', 'CsaV3_2G015620' => 'csa', 'CsaV3_3G012590' => 'csa', 'CsaV3_3G012600' => 'csa', 'CSS0001641' => 'camsi', 'CSS0008310' => 'camsi', 'CSS0013011' => 'camsi', 'CSS0017147' => 'camsi', 'CSS0022970' => 'camsi', 'CSS0025655' => 'camsi', 'CSS0028665' => 'camsi', 'CSS0029117' => 'camsi', 'CSS0032024' => 'camsi', 'CSS0039681' => 'camsi', 'CSS0046516' => 'camsi', 'CSS0050307' => 'camsi', 'DCAR_005871' => 'dca', 'DCAR_007342' => 'dca', 'DCAR_024228' => 'dca', 'DCAR_027277' => 'dca', 'DCAR_030718' => 'dca', 'Dinv20287' => 'din', 'Dinv22461' => 'din', 'Dinv22464' => 'din', 'Dinv29912' => 'din', 'Dinv29913' => 'din', 'Dinv34580' => 'din', 'Dinv34582' => 'din', 'Dinv44632' => 'din', 'Duzib052G0266' => 'dzi', 'Duzib133G0907' => 'dzi', 'Duzib133G1034' => 'dzi', 'Duzib138G0207' => 'dzi', 'Duzib138G0491' => 'dzi', 'Duzib151G0812' => 'dzi', 'Duzib151G1166' => 'dzi', 'Duzib168G0192' => 'dzi', 'Duzib211G0077' => 'dzi', 'Duzib212G0429' => 'dzi', 'Duzib212G0472' => 'dzi', 'ECA233G2617' => 'eca', 'ECA236G4188' => 'eca', 'ECA240G0936' => 'eca', 'ECA240G1129' => 'eca', 'ECA247G0623' => 'eca', 'EL10Ac5g10451' => 'bvu', 'EL10Ac5g10453' => 'bvu', 'EL10Ac5g10894' => 'bvu', 'Eucgr.H00192' => 'egr', 'Eucgr.H00193' => 'egr', 'Eucgr.H00194' => 'egr', 'Eucgr.J01562' => 'egr', 'Eucgr.K03301' => 'egr', 'FAN02G0632' => 'fan', 'FAN05G5378' => 'fan', 'FAN09G3247' => 'fan', 'FAN12G0435' => 'fan', 'FAN12G2426' => 'fan', 'FAN14G1707' => 'fan', 'FAN14G4725' => 'fan', 'FAN15G2071' => 'fan', 'FAN17G3065' => 'fan', 'FAN19G1376' => 'fan', 'FAN20G0354' => 'fan', 'FAN20G2429' => 'fan', 'FAN20G2658' => 'fan', 'FAN24G2343' => 'fan', 'FAN27G2362' => 'fan', 'FAN28G1765' => 'fan', 'FvH4_1g16020' => 'fve', 'FvH4_2g04890' => 'fve', 'FvH4_2g22270' => 'fve', 'FvH4_4g02630' => 'fve', 'FvH4_4g02640' => 'fve', 'FvH4_6g02650' => 'fve', 'Glyma.02G140600' => 'gma', 'Glyma.03G159900' => 'gma', 'Glyma.05G234800' => 'gma', 'Glyma.07G269600' => 'gma', 'Glyma.08G042300' => 'gma', 'Glyma.10G033500' => 'gma', 'Glyma.10G185200' => 'gma', 'Glyma.17G004300' => 'gma', 'Glyma.19G161900' => 'gma', 'Glyma.20G205100' => 'gma', 'Glyma.20G205200' => 'gma', 'Gohir.A01G139101' => 'ghi', 'Gohir.A02G035600' => 'ghi', 'Gohir.A02G117901' => 'ghi', 'Gohir.A07G210100' => 'ghi', 'Gohir.A07G210200' => 'ghi', 'Gohir.A08G061100' => 'ghi', 'Gohir.A09G223000' => 'ghi', 'Gohir.A09G223100' => 'ghi', 'Gohir.A10G113900' => 'ghi', 'Gohir.A10G114000' => 'ghi', 'Gohir.D02G042300' => 'ghi', 'Gohir.D07G216100' => 'ghi', 'Gohir.D07G216200' => 'ghi', 'Gohir.D08G070400' => 'ghi', 'Gohir.D09G225000' => 'ghi', 'Gohir.D09G225100' => 'ghi', 'Gohir.D10G152300' => 'ghi', 'Gohir.D10G153200' => 'ghi', 'Gohir.D11G133701' => 'ghi', 'Gorai.004G074100' => 'gra', 'Gorai.005G046800' => 'gra', 'Gorai.006G246500' => 'gra', 'Gorai.006G246600' => 'gra', 'Gorai.007G142900' => 'gra', 'Gorai.011G171000' => 'gra', 'Gorai.011G171100' => 'gra', 'Gorai.013G104300' => 'gra', 'Gorai.013G104400' => 'gra', 'GSVIVG01000754001' => 'vvi', 'GSVIVG01000756001' => 'vvi', 'GSVIVG01010903001' => 'vvi', 'GSVIVG01017623001' => 'vvi', 'GSVIVG01018113001' => 'vvi', 'GSVIVG01018116001' => 'vvi', 'GSVIVG01018118001' => 'vvi', 'HanXRQChr03g0076211' => 'han', 'HanXRQChr03g0092431' => 'han', 'HanXRQChr03g0092441' => 'han', 'HanXRQChr03g0092591' => 'han', 'HanXRQChr03g0092671' => 'han', 'HanXRQChr03g0092681' => 'han', 'HanXRQChr03g0092691' => 'han', 'HanXRQChr03g0092701' => 'han', 'HanXRQChr03g0092721' => 'han', 'HanXRQChr03g0092731' => 'han', 'HanXRQChr04g0113681' => 'han', 'HanXRQChr10g0281371' => 'han', 'HanXRQChr11g0337141' => 'han', 'HanXRQChr13g0424521' => 'han', 'HanXRQChr13g0424531' => 'han', 'HanXRQChr13g0424541' => 'han', 'HanXRQChr16g0498221' => 'han', 'Haze_04377' => 'cav', 'Haze_11298' => 'cav', 'Haze_24547' => 'cav', 'Haze_24550' => 'cav', 'Haze_26587' => 'cav', 'Hma1.2p1_0650F.1_g195410' => 'hma', 'Hma1.2p1_0893F.1_g233470' => 'hma', 'HPP92_006508' => 'vpl', 'HPP92_024780' => 'vpl', 'Hund02688' => 'sun', 'Hund09380' => 'sun', 'Hund09381' => 'sun', 'Hund09832' => 'sun', 'Hund09833' => 'sun', 'Hund11351' => 'sun', 'Hund11513' => 'sun', 'Lalb_Chr06g0162591' => 'lal', 'Lalb_Chr06g0162601' => 'lal', 'Lalb_Chr06g0169321' => 'lal', 'Lalb_Chr09g0330951' => 'lal', 'Lalb_Chr16g0387631' => 'lal', 'Lalb_Chr21g0306241' => 'lal', 'Lalb_Chr25g0290051' => 'lal', 'Lalb_Chr25g0290061' => 'lal', 'Lalb_Chr25g0290071' => 'lal', 'Lj1g0003876' => 'lja', 'Lj1P1207T36' => 'lonja', 'Lj2C1156G12' => 'lonja', 'Lj3A793G39' => 'lonja', 'Lj3C580G2' => 'lonja', 'Lj3C780G2' => 'lonja', 'Lj3C780T4' => 'lonja', 'Lj3C793G9' => 'lonja', 'Lj4g0012960' => 'lja', 'Lj5g0021252' => 'lja', 'Lj5g0021484' => 'lja', 'Lj5g0024528' => 'lja', 'Lj6A399T12' => 'lonja', 'Lj6A656G65' => 'lonja', 'Lsat_1_v5_gn_3_125500' => 'lsa', 'Lsat_1_v5_gn_3_125540' => 'lsa', 'Lsat_1_v5_gn_5_72701' => 'lsa', 'Lsat_1_v5_gn_8_91560' => 'lsa', 'Lsat_1_v5_gn_9_9640' => 'lsa', 'Manes.01G200600' => 'mes', 'Manes.01G200700' => 'mes', 'Manes.03G168900' => 'mes', 'Manes.03G169000' => 'mes', 'Manes.05G085801' => 'mes', 'Manes.05G086200' => 'mes', 'Manes.15G036700' => 'mes', 'Manes.15G036900' => 'mes', 'Mapoly0004s0172' => 'mpo', 'Mapoly0023s0001' => 'mpo', 'Mapoly0142s0012' => 'mpo', 'MBI01_g32854_MAGBIO' => 'mbi', 'MBI11_g24427_MAGBIO' => 'mbi', 'MBI11_g47319_MAGBIO' => 'mbi', 'MCO01G433' => 'mco', 'MD00G1187800' => 'mdo', 'MD04G1226500' => 'mdo', 'MD05G1203900' => 'mdo', 'MD10G1191100' => 'mdo', 'MD12G1243500' => 'mdo', 'MD13G1207000' => 'mdo', 'MD13G1207100' => 'mdo', 'MD16G1208600' => 'mdo', 'Medtr1g050352' => 'mtr', 'Medtr1g070385' => 'mtr', 'Medtr1g070450' => 'mtr', 'Medtr1g075200' => 'mtr', 'Medtr1g075250' => 'mtr', 'Medtr1g075260' => 'mtr', 'Medtr1g475250' => 'mtr', 'Medtr4g075450' => 'mtr', 'Medtr7g096300' => 'mtr', 'Medtr8g105110' => 'mtr', 'MELO3C006470.2' => 'cme', 'MELO3C006471.2' => 'cme', 'MELO3C020772.2' => 'cme', 'MELO3C026780.2' => 'cme', 'MELO3C026781.2' => 'cme', 'Migut.D00390' => 'egut', 'Migut.G00435' => 'egut', 'Migut.G00436' => 'egut', 'Migut.G00718' => 'egut', 'MSTRG.21891' => 'ama', 'MSTRG.26910' => 'ama', 'MSTRG.4099' => 'ama', 'MSTRG.9925' => 'ama', 'Nitab4.5_0000165g0010' => 'nta', 'Nitab4.5_0000209g0180' => 'nta', 'Nitab4.5_0000244g0440' => 'nta', 'Nitab4.5_0000525g0220' => 'nta', 'Nitab4.5_0001597g0020' => 'nta', 'Nitab4.5_0001878g0040' => 'nta', 'Nitab4.5_0001878g0060' => 'nta', 'Nitab4.5_0002838g0100' => 'nta', 'Nitab4.5_0002838g0120' => 'nta', 'Nitab4.5_0004798g0030' => 'nta', 'Nitab4.5_0005420g0010' => 'nta', 'Nitab4.5_0005507g0010' => 'nta', 'Nitab4.5_0005574g0020' => 'nta', 'Nitab4.5_0005838g0010' => 'nta', 'Nitab4.5_0010580g0020' => 'nta', 'Nn1g02599' => 'nnu', 'Nn1g02608' => 'nnu', 'Nn3g17742' => 'nnu', 'Nn3g19534' => 'nnu', 'Nn3g19535' => 'nnu', 'Oeu008790.1' => 'oeu', 'Oeu008792.1' => 'oeu', 'Oeu032590.1' => 'oeu', 'Oeu035349.1' => 'oeu', 'Oeu049791.1' => 'oeu', 'Os01g0774500' => 'osa', 'Os03g0628800' => 'osa', 'Os03g0798600' => 'osa', 'Os05g0508800' => 'osa', 'Peaxi162Scf00036g02018' => 'pax', 'Peaxi162Scf00578g00032' => 'pax', 'Peaxi162Scf00578g00317' => 'pax', 'Peaxi162Scf00785g00114' => 'pax', 'Peaxi162Scf00813g00119' => 'pax', 'Peaxi162Scf00906g00227' => 'pax', 'PGR004G0875' => 'pgr', 'PGR004G2424' => 'pgr', 'PGR031G1239' => 'pgr', 'PGR031G2474' => 'pgr', 'PGR044G0423' => 'pgr', 'PGSC0003DMG400001128' => 'stu', 'PGSC0003DMG400007336' => 'stu', 'PGSC0003DMG400016318' => 'stu', 'PGSC0003DMG400016319' => 'stu', 'PGSC0003DMG400018074' => 'stu', 'Phvul.001G157700' => 'pvu', 'Phvul.002G148550' => 'pvu', 'Phvul.002G320200' => 'pvu', 'Phvul.003G089200' => 'pvu', 'Phvul.007G126000' => 'pvu', 'Phvul.007G126100' => 'pvu', 'Phvul.007G178000' => 'pvu', 'Phvul.007G178200' => 'pvu', 'Potri.002G043000' => 'ptr', 'Potri.002G043200' => 'ptr', 'Potri.003G123750' => 'ptr', 'Potri.005G055401' => 'ptr', 'Potri.005G219700' => 'ptr', 'Potri.005G220000' => 'ptr', 'Potri.008G161901' => 'ptr', 'Potri.008G162000' => 'ptr', 'Potri.008G162400' => 'ptr', 'Potri.010G076900' => 'ptr', 'Pp3c12_9180' => 'ppa', 'Pp3c13_19770' => 'ppa', 'Pp3c14_22950' => 'ppa', 'Pp3c16_12160' => 'ppa', 'Pp3c27_7820' => 'ppa', 'Pp3c2_3490' => 'ppa', 'Pp3c3_23700' => 'ppa', 'Pp3c3_36520' => 'ppa', 'Pp3c4_15250' => 'ppa', 'PRCOL_00007002' => 'pco', 'Prupe.1G030600' => 'ppe', 'Prupe.1G030700' => 'ppe', 'Prupe.6G345200' => 'ppe', 'Prupe.8G230300' => 'ppe', 'Prupe.8G230500' => 'ppe', 'Psat3g059600' => 'psa', 'Psat5g200920' => 'psa', 'Psat6g056440' => 'psa', 'Psat6g057360' => 'psa', 'Psat6g134120' => 'psa', 'Psat6g134160' => 'psa', 'Psat7g008640' => 'psa', 'Psat7g185240' => 'psa', 'PSO017G1330' => 'pso', 'PSO063G6097' => 'pso', 'PSO170G0835' => 'pso', 'PSO170G2499' => 'pso', 'PSO210G5058' => 'pso', 'PSO210G6154' => 'pso', 'PSO585G0031' => 'pso', 'PSO832G0264' => 'pso', 'PSO832G4288' => 'pso', 'QL03p027355' => 'qlo', 'QL03p027430' => 'qlo', 'QL04p081380' => 'qlo', 'QL06p015642' => 'qlo', 'QL06p015650' => 'qlo', 'QL06p015686' => 'qlo', 'QL12p042927' => 'qlo', 'QL93p1863_0035' => 'qlo', 'RcHm_v2.0_Chr3g0450581' => 'rch', 'RcHm_v2.0_Chr4g0390371' => 'rch', 'RcHm_v2.0_Chr4g0390381' => 'rch', 'RcHm_v2.0_Chr4g0390491' => 'rch', 'RcHm_v2.0_Chr4g0390501' => 'rch', 'RcHm_v2.0_Chr6g0289231' => 'rch', 'Rhsim04G0190400' => 'rsi', 'Rhsim04G0190500' => 'rsi', 'Rhsim04G0190600' => 'rsi', 'Rhsim13G0031400' => 'rsi', 'Rhsim13G0165600' => 'rsi', 'RhsimUnG0114600' => 'rsi', 'RhsimUnG0114700' => 'rsi', 'Sabra02G0034800' => 'sbr', 'Sabra02G0035100' => 'sbr', 'Sabra05G0168600' => 'sbr', 'Sabra05G0168800' => 'sbr', 'Sabra08G0123700' => 'sbr', 'Sabra10G0031900' => 'sbr', 'Sabra13G0039000' => 'sbr', 'SalBow2G0782' => 'sbo', 'SalBow2G1403' => 'sbo', 'SalBow4G0074' => 'sbo', 'SalBow4G2635' => 'sbo', 'SalBow5G3010' => 'sbo', 'Sc05g0000870' => 'sci', 'Sc05g0000890' => 'sci', 'Sc13g0005000' => 'sci', 'Sc13g0005030' => 'sci', 'Sc19g0003790' => 'sci', 'Sc19g0003800' => 'sci', 'Sed0003467' => 'sed', 'Sed0009355' => 'sed', 'Sed0009894' => 'sed', 'Sed0011972' => 'sed', 'Sed0021483' => 'sed', 'Sed0021750' => 'sed', 'Sed0026279' => 'sed', 'SEGI_05312' => 'sgi', 'SEGI_10112' => 'sgi', 'SEGI_15835' => 'sgi', 'SEGI_30386' => 'sgi', 'SEGI_34122' => 'sgi', 'SEGI_35063' => 'sgi', 'SGA_v2.0_scaffold101G29794' => 'sas', 'SGA_v2.0_scaffold1G00573' => 'sas', 'SGA_v2.0_scaffold79G25637' => 'sas', 'SGA_v2.0_scaffold88G27283' => 'sas', 'SGA_v2.0_scaffold88G27285' => 'sas', 'SGA_v2.0_scaffold88G27331' => 'sas', 'SHI09937' => 'shi', 'SMO119G0302' => 'smo', 'SMO137G0231' => 'smo', 'SMO367G1151' => 'smo', 'Solyc02g082000.3' => 'sly', 'Solyc06g031670.3' => 'sly', 'Solyc06g053810.3' => 'sly', 'Solyc07g025457.1' => 'sly', 'Solyc08g059740.1' => 'sly', 'Solyc08g059750.3' => 'sly', 'Solyc09g083370.3' => 'sly', 'Solyc12g038950.3' => 'sly', 'Sopen02g026630' => 'spe', 'Sopen06g018930' => 'spe', 'Sopen06g018940' => 'spe', 'Sopen08g009460' => 'spe', 'Sopen09g032290' => 'spe', 'Sp1g03080' => 'spa', 'Sp1g03090' => 'spa', 'Sp1g05480' => 'spa', 'Sp2g07860' => 'spa', 'Sp2g08430' => 'spa', 'Sp2g08440' => 'spa', 'Sp2g26200' => 'spa', 'Sp4g13170' => 'spa', 'Sp6g33840' => 'spa', 'SpUn1204_0010' => 'spa', 'TAR365G0908' => 'tar', 'TAR381G1270' => 'tar', 'TAR381G1651' => 'tar', 'TAR625G1131' => 'tar', 'TAR633G0962' => 'tar', 'TAR633G1729' => 'tar', 'TAR633G1864' => 'tar', 'TAR636G0221' => 'tar', 'TAR636G0314' => 'tar', 'TAR636G3202' => 'tar', 'THA.LOC104800805' => 'tha', 'THA.LOC104801096' => 'tha', 'THA.LOC104801555' => 'tha', 'THA.LOC104808491' => 'tha', 'THA.LOC104808595' => 'tha', 'THA.LOC104815985' => 'tha', 'THA.LOC104822250' => 'tha', 'THA.LOC104826071' => 'tha', 'Thecc.01G265200' => 'tca', 'Thecc.01G265300' => 'tca', 'Thecc.01G265700' => 'tca', 'Thecc.03G109100' => 'tca', 'Thecc.04G245900' => 'tca', 'Thecc.04G246000' => 'tca', 'Thhalv10003334m.g' => 'esa', 'Thhalv10005508m.g' => 'esa', 'Thhalv10005643m.g' => 'esa', 'Thhalv10007316m.g' => 'esa', 'Thhalv10009006m.g' => 'esa', 'Thhalv10009309m.g' => 'esa', 'Thhalv10014917m.g' => 'esa', 'Thhalv10014919m.g' => 'esa', 'Thhalv10015393m.g' => 'esa', 'Thhalv10016515m.g' => 'esa', 'Thhalv10029242m.g' => 'esa', 'TPR.G16654' => 'tpr', 'TPR.G20589' => 'tpr', 'TPR.G23029' => 'tpr', 'TPR.G27731' => 'tpr', 'TPR.G28889' => 'tpr', 'TPR.G28899' => 'tpr', 'TPR.G30846' => 'tpr', 'TPR.G5452' => 'tpr', 'TPR.G5713' => 'tpr', 'TPR.G9046' => 'tpr', 'TPR.G9061' => 'tpr', 'TWI09G1075' => 'twi', 'TWI12G0806' => 'twi', 'TWI18G0108' => 'twi', 'TWI53G1361' => 'twi', 'TWI73G0185' => 'twi', 'TWI73G0427' => 'twi', 'unitig_37.g12001' => 'ugi', 'unitig_747.g21660' => 'ugi', 'unitig_748.g7232' => 'ugi', 'unitig_748.g7315' => 'ugi', 'unitig_85.g27262' => 'ugi', 'unitig_92.g28220' => 'ugi', 'vmacro02632' => 'vma', 'vmacro08410' => 'vma', 'vmacro08411' => 'vma', 'vmacro15407' => 'vma', 'VMungo0251G3619' => 'vmu', 'VMungo0720G1204' => 'vmu', 'VMungo0720G1918' => 'vmu', 'VMungo0720G2387' => 'vmu', 'VMungo0720G2961' => 'vmu', 'VMungo1215G2154' => 'vmu', 'VMungo1383G2411' => 'vmu', 'Zm00001eb051130' => 'zma', 'Zm00001eb116830' => 'zma', 'Zm00001eb116850' => 'zma', 'Zm00001eb151740' => 'zma', 'Zm00001eb292360' => 'zma', 'Zm00001eb301640' => 'zma' ) $gf_id = 'HOM05D000856' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000856' ) $data_identifier = 'HOM05D000856' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 13, 'ath' => (int) 10, 'atr' => (int) 1, 'acertr' => (int) 8, 'cqu' => (int) 6, 'bca' => (int) 21, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 11, 'car' => (int) 9, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 8, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 5, 'fan' => (int) 16, 'fve' => (int) 6, 'gma' => (int) 11, 'ghi' => (int) 19, 'gra' => (int) 9, 'vvi' => (int) 7, 'han' => (int) 17, 'cav' => (int) 5, 'hma' => (int) 2, 'vpl' => (int) 2, 'sun' => (int) 7, 'lal' => (int) 9, 'lja' => (int) 5, 'lonja' => (int) 9, 'lsa' => (int) 5, 'mes' => (int) 8, 'mpo' => (int) 3, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 10, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 15, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 9, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 9, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 6, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 5, 'spa' => (int) 10, 'tar' => (int) 10, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 11, 'tpr' => (int) 11, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 4, 'vmu' => (int) 7, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb301640' $species_info = array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ) $local_species = 'spa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000856', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p00010' => 'bna', 'A03p04160' => 'bna', 'A03p17160' => 'bna', 'A04p23370' => 'bna', 'A05p14860' => 'bna', 'A08p37020' => 'bna', 'A09p08050' => 'bna', 'A09p66800' => 'bna', 'A09p67940' => 'bna', 'A10p02680' => 'bna', 'A10p05320' => 'bna', 'Aa31LG1G20560' => 'aar', 'Aa31LG1G20610' => 'aar', 'Aa31LG1G7810' => 'aar', 'Aa31LG5G3590' => 'aar', 'Aa31LG5G6140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3819' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4683' => 'aag', 'Actinidia04480' => 'ach', 'Actinidia05466' => 'ach', 'Actinidia08445' => 'ach', 'Actinidia21170' => 'ach', 'Actinidia24812' => 'ach', 'Actinidia24951' => 'ach', 'Actinidia40088' => 'ach', 'Ah.02g111660' => 'amhyb', 'Ah.11g048900' => 'amhyb', 'Ah.11g049910' => 'amhyb', 'AL1G13870' => 'aly', 'AL1G13880' => 'aly', 'AL1G16760' => 'aly', 'AL390U10020' => 'aly', 'AL4G25520' => 'aly', 'AL6G19890' => 'aly', 'AL6G19900' => 'aly', 'AL6G19910' => 'aly', 'AL8G40100' => 'aly', 'Aqoxy2G03562' => 'aox', 'Aqoxy5G00316' => 'aox', 'Aqoxy5G00926' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1628KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1H403S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2FU6SJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.882I6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8YRY2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YN1SN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AF70II' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZA8L1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F916KL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHRD8H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KTZ8QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S22EMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8M29T' => 'arhy', 'AT1G04270' => 'ath', 'AT1G04280' => 'ath', 'AT1G06750' => 'ath', 'AT1G33850' => 'ath', 'AT2G30630' => 'ath', 'AT5G09490' => 'ath', 'AT5G09500' => 'ath', 'AT5G09510' => 'ath', 'AT5G43640' => 'ath', 'AT5G63070' => 'ath', 'ATR0605G315' => 'atr', 'Atru.chr11.175' => 'acertr', 'Atru.chr11.653' => 'acertr', 'Atru.chr3.1616' => 'acertr', 'Atru.chr4.2230' => 'acertr', 'Atru.chr4.2232' => 'acertr', 'Atru.chr5.1598' => 'acertr', 'Atru.chr5.1600' => 'acertr', 'Atru.chr5.2188' => 'acertr', 'AUR62008326' => 'cqu', 'AUR62011922' => 'cqu', 'AUR62011924' => 'cqu', 'AUR62021771' => 'cqu', 'AUR62032237' => 'cqu', 'AUR62032240' => 'cqu', 'BcaB01g05572' => 'bca', 'BcaB02g10337' => 'bca', 'BcaB04g19944' => 'bca', 'BcaB05g21548' => 'bca', 'BcaB05g21549' => 'bca', 'BcaB05g23227' => 'bca', 'BcaB06g26256' => 'bca', 'BcaB06g26257' => 'bca', 'BcaB06g28379' => 'bca', 'BcaC02g11159' => 'bca', 'BcaC03g13258' => 'bca', 'BcaC03g13259' => 'bca', 'BcaC05g24456' => 'bca', 'BcaC05g24457' => 'bca', 'BcaC07g36922' => 'bca', 'BcaC07g36923' => 'bca', 'BcaC07g42050' => 'bca', 'BcaC07g42176' => 'bca', 'BcaC07g42195' => 'bca', 'BcaC07g42196' => 'bca', 'BcaNung06674' => 'bca', 'BolC2t06351H' => 'bol', 'BolC2t06352H' => 'bol', 'BolC3t12993H' => 'bol', 'BolC4t23525H' => 'bol', 'BolC4t27475H' => 'bol', 'BolC5t29025H' => 'bol', 'BolC5t29026H' => 'bol', 'BolC8t46898H' => 'bol', 'BolC8t46899H' => 'bol', 'BolC8t52630H' => 'bol', 'BolC8t52765H' => 'bol', 'BolC9t53824H' => 'bol', 'BraA03t09760Z' => 'bra', 'BraA03t10990Z' => 'bra', 'BraA05t20413Z' => 'bra', 'BraA08t35602Z' => 'bra', 'BraA09t36458Z' => 'bra', 'BraA09t42018Z' => 'bra', 'BraA09t42129Z' => 'bra', 'BraA10t42536Z' => 'bra', 'BraA10t42537Z' => 'bra', 'C01p10690' => 'bna', 'C02p03890' => 'bna', 'C02p03900' => 'bna', 'C03p04620' => 'bna', 'C04p19870' => 'bna', 'C04p59670' => 'bna', 'C05p02460' => 'bna', 'C05p02470' => 'bna', 'C08p00980' => 'bna', 'C08p00990' => 'bna', 'C08p51030' => 'bna', 'C08p52360' => 'bna', 'C09p09120' => 'bna', 'CAN.G19.15' => 'can', 'CAN.G251.10' => 'can', 'CAN.G251.9' => 'can', 'CAN.G398.24' => 'can', 'CAN.G410.32' => 'can', 'CAN.G881.2' => 'can', 'CANSAT01G3025' => 'cansat', 'CANSAT78G1211' => 'cansat', 'CANSAT78G1218' => 'cansat', 'CANSAT78G1521' => 'cansat', 'CANSAT78G1670' => 'cansat', 'CARHR003600' => 'chi', 'CARHR003610' => 'chi', 'CARHR006290' => 'chi', 'CARHR006430' => 'chi', 'CARHR124110' => 'chi', 'CARHR203870' => 'chi', 'CARHR203880' => 'chi', 'CARHR203890' => 'chi', 'CARHR276880' => 'chi', 'Carub.0001s0346' => 'cru', 'Carub.0001s0347' => 'cru', 'Carub.0001s0607' => 'cru', 'Carub.0003s2768' => 'cru', 'Carub.0003s2769' => 'cru', 'Carub.0004s1178' => 'cru', 'Carub.0006s0806' => 'cru', 'Carub.0006s0807' => 'cru', 'Carub.0006s0808' => 'cru', 'Carub.0008s0501' => 'cru', 'Carub.0008s2379' => 'cru', 'Ca_08655_v3' => 'car', 'Ca_08922_v3' => 'car', 'Ca_08923_v3' => 'car', 'Ca_09119_v3' => 'car', 'Ca_09703_v3' => 'car', 'Ca_09705_v3' => 'car', 'Ca_09835_v3' => 'car', 'Ca_26403_v3' => 'car', 'Ca_30719_v3' => 'car', 'CBR_g17958' => 'cbr', 'CBR_g40516' => 'cbr', 'Cc00_g05350' => 'ccan', 'Cc01_g18690' => 'ccan', 'Cc03_g04830' => 'ccan', 'Cc03_g04850' => 'ccan', 'CDE02G4469' => 'cde', 'CDE06G0883' => 'cde', 'CDE06G1295' => 'cde', 'CDE06G1390' => 'cde', 'CDE07G0584' => 'cde', 'CDE07G1084' => 'cde', 'CDE08G1259' => 'cde', 'Cfa002341' => 'cfa', 'Cfa024337' => 'cfa', 'Ciclev10004749m.g' => 'ccl', 'Ciclev10006127m.g' => 'ccl', 'Ciclev10019720m.g' => 'ccl', 'Ciclev10022652m.g' => 'ccl', 'CiPaw.01G190400' => 'cil', 'CiPaw.01G190500' => 'cil', 'CiPaw.02G116400' => 'cil', 'CiPaw.02G116500' => 'cil', 'CiPaw.04G183000' => 'cil', 'CiPaw.04G183300' => 'cil', 'ClCG05G004610' => 'cla', 'ClCG05G004620' => 'cla', 'ClCG06G006730' => 'cla', 'ClCG06G006740' => 'cla', 'ClCG11G003690' => 'cla', 'COL.COLO4_08276' => 'col', 'COL.COLO4_08277' => 'col', 'COL.COLO4_15787' => 'col', 'COL.COLO4_15789' => 'col', 'Cpa.g.c44815' => 'cpa', 'Cpa.g.sc52.144' => 'cpa', 'Cpa.g.sc58.46' => 'cpa', 'Cpa.g.sc58.47' => 'cpa', 'Cre08.g360900' => 'cre', 'CsaV3_2G013030' => 'csa', 'CsaV3_2G013050' => 'csa', 'CsaV3_2G015620' => 'csa', 'CsaV3_3G012590' => 'csa', 'CsaV3_3G012600' => 'csa', 'CSS0001641' => 'camsi', 'CSS0008310' => 'camsi', 'CSS0013011' => 'camsi', 'CSS0017147' => 'camsi', 'CSS0022970' => 'camsi', 'CSS0025655' => 'camsi', 'CSS0028665' => 'camsi', 'CSS0029117' => 'camsi', 'CSS0032024' => 'camsi', 'CSS0039681' => 'camsi', 'CSS0046516' => 'camsi', 'CSS0050307' => 'camsi', 'DCAR_005871' => 'dca', 'DCAR_007342' => 'dca', 'DCAR_024228' => 'dca', 'DCAR_027277' => 'dca', 'DCAR_030718' => 'dca', 'Dinv20287' => 'din', 'Dinv22461' => 'din', 'Dinv22464' => 'din', 'Dinv29912' => 'din', 'Dinv29913' => 'din', 'Dinv34580' => 'din', 'Dinv34582' => 'din', 'Dinv44632' => 'din', 'Duzib052G0266' => 'dzi', 'Duzib133G0907' => 'dzi', 'Duzib133G1034' => 'dzi', 'Duzib138G0207' => 'dzi', 'Duzib138G0491' => 'dzi', 'Duzib151G0812' => 'dzi', 'Duzib151G1166' => 'dzi', 'Duzib168G0192' => 'dzi', 'Duzib211G0077' => 'dzi', 'Duzib212G0429' => 'dzi', 'Duzib212G0472' => 'dzi', 'ECA233G2617' => 'eca', 'ECA236G4188' => 'eca', 'ECA240G0936' => 'eca', 'ECA240G1129' => 'eca', 'ECA247G0623' => 'eca', 'EL10Ac5g10451' => 'bvu', 'EL10Ac5g10453' => 'bvu', 'EL10Ac5g10894' => 'bvu', 'Eucgr.H00192' => 'egr', 'Eucgr.H00193' => 'egr', 'Eucgr.H00194' => 'egr', 'Eucgr.J01562' => 'egr', 'Eucgr.K03301' => 'egr', 'FAN02G0632' => 'fan', 'FAN05G5378' => 'fan', 'FAN09G3247' => 'fan', 'FAN12G0435' => 'fan', 'FAN12G2426' => 'fan', 'FAN14G1707' => 'fan', 'FAN14G4725' => 'fan', 'FAN15G2071' => 'fan', 'FAN17G3065' => 'fan', 'FAN19G1376' => 'fan', 'FAN20G0354' => 'fan', 'FAN20G2429' => 'fan', 'FAN20G2658' => 'fan', 'FAN24G2343' => 'fan', 'FAN27G2362' => 'fan', 'FAN28G1765' => 'fan', 'FvH4_1g16020' => 'fve', 'FvH4_2g04890' => 'fve', 'FvH4_2g22270' => 'fve', 'FvH4_4g02630' => 'fve', 'FvH4_4g02640' => 'fve', 'FvH4_6g02650' => 'fve', 'Glyma.02G140600' => 'gma', 'Glyma.03G159900' => 'gma', 'Glyma.05G234800' => 'gma', 'Glyma.07G269600' => 'gma', 'Glyma.08G042300' => 'gma', 'Glyma.10G033500' => 'gma', 'Glyma.10G185200' => 'gma', 'Glyma.17G004300' => 'gma', 'Glyma.19G161900' => 'gma', 'Glyma.20G205100' => 'gma', 'Glyma.20G205200' => 'gma', 'Gohir.A01G139101' => 'ghi', 'Gohir.A02G035600' => 'ghi', 'Gohir.A02G117901' => 'ghi', 'Gohir.A07G210100' => 'ghi', 'Gohir.A07G210200' => 'ghi', 'Gohir.A08G061100' => 'ghi', 'Gohir.A09G223000' => 'ghi', 'Gohir.A09G223100' => 'ghi', 'Gohir.A10G113900' => 'ghi', 'Gohir.A10G114000' => 'ghi', 'Gohir.D02G042300' => 'ghi', 'Gohir.D07G216100' => 'ghi', 'Gohir.D07G216200' => 'ghi', 'Gohir.D08G070400' => 'ghi', 'Gohir.D09G225000' => 'ghi', 'Gohir.D09G225100' => 'ghi', 'Gohir.D10G152300' => 'ghi', 'Gohir.D10G153200' => 'ghi', 'Gohir.D11G133701' => 'ghi', 'Gorai.004G074100' => 'gra', 'Gorai.005G046800' => 'gra', 'Gorai.006G246500' => 'gra', 'Gorai.006G246600' => 'gra', 'Gorai.007G142900' => 'gra', 'Gorai.011G171000' => 'gra', 'Gorai.011G171100' => 'gra', 'Gorai.013G104300' => 'gra', 'Gorai.013G104400' => 'gra', 'GSVIVG01000754001' => 'vvi', 'GSVIVG01000756001' => 'vvi', 'GSVIVG01010903001' => 'vvi', 'GSVIVG01017623001' => 'vvi', 'GSVIVG01018113001' => 'vvi', 'GSVIVG01018116001' => 'vvi', 'GSVIVG01018118001' => 'vvi', 'HanXRQChr03g0076211' => 'han', 'HanXRQChr03g0092431' => 'han', 'HanXRQChr03g0092441' => 'han', 'HanXRQChr03g0092591' => 'han', 'HanXRQChr03g0092671' => 'han', 'HanXRQChr03g0092681' => 'han', 'HanXRQChr03g0092691' => 'han', 'HanXRQChr03g0092701' => 'han', 'HanXRQChr03g0092721' => 'han', 'HanXRQChr03g0092731' => 'han', 'HanXRQChr04g0113681' => 'han', 'HanXRQChr10g0281371' => 'han', 'HanXRQChr11g0337141' => 'han', 'HanXRQChr13g0424521' => 'han', 'HanXRQChr13g0424531' => 'han', 'HanXRQChr13g0424541' => 'han', 'HanXRQChr16g0498221' => 'han', 'Haze_04377' => 'cav', 'Haze_11298' => 'cav', 'Haze_24547' => 'cav', 'Haze_24550' => 'cav', 'Haze_26587' => 'cav', 'Hma1.2p1_0650F.1_g195410' => 'hma', 'Hma1.2p1_0893F.1_g233470' => 'hma', 'HPP92_006508' => 'vpl', 'HPP92_024780' => 'vpl', 'Hund02688' => 'sun', 'Hund09380' => 'sun', 'Hund09381' => 'sun', 'Hund09832' => 'sun', 'Hund09833' => 'sun', 'Hund11351' => 'sun', 'Hund11513' => 'sun', 'Lalb_Chr06g0162591' => 'lal', 'Lalb_Chr06g0162601' => 'lal', 'Lalb_Chr06g0169321' => 'lal', 'Lalb_Chr09g0330951' => 'lal', 'Lalb_Chr16g0387631' => 'lal', 'Lalb_Chr21g0306241' => 'lal', 'Lalb_Chr25g0290051' => 'lal', 'Lalb_Chr25g0290061' => 'lal', 'Lalb_Chr25g0290071' => 'lal', 'Lj1g0003876' => 'lja', 'Lj1P1207T36' => 'lonja', 'Lj2C1156G12' => 'lonja', 'Lj3A793G39' => 'lonja', 'Lj3C580G2' => 'lonja', 'Lj3C780G2' => 'lonja', 'Lj3C780T4' => 'lonja', 'Lj3C793G9' => 'lonja', 'Lj4g0012960' => 'lja', 'Lj5g0021252' => 'lja', 'Lj5g0021484' => 'lja', 'Lj5g0024528' => 'lja', 'Lj6A399T12' => 'lonja', 'Lj6A656G65' => 'lonja', 'Lsat_1_v5_gn_3_125500' => 'lsa', 'Lsat_1_v5_gn_3_125540' => 'lsa', 'Lsat_1_v5_gn_5_72701' => 'lsa', 'Lsat_1_v5_gn_8_91560' => 'lsa', 'Lsat_1_v5_gn_9_9640' => 'lsa', 'Manes.01G200600' => 'mes', 'Manes.01G200700' => 'mes', 'Manes.03G168900' => 'mes', 'Manes.03G169000' => 'mes', 'Manes.05G085801' => 'mes', 'Manes.05G086200' => 'mes', 'Manes.15G036700' => 'mes', 'Manes.15G036900' => 'mes', 'Mapoly0004s0172' => 'mpo', 'Mapoly0023s0001' => 'mpo', 'Mapoly0142s0012' => 'mpo', 'MBI01_g32854_MAGBIO' => 'mbi', 'MBI11_g24427_MAGBIO' => 'mbi', 'MBI11_g47319_MAGBIO' => 'mbi', 'MCO01G433' => 'mco', 'MD00G1187800' => 'mdo', 'MD04G1226500' => 'mdo', 'MD05G1203900' => 'mdo', 'MD10G1191100' => 'mdo', 'MD12G1243500' => 'mdo', 'MD13G1207000' => 'mdo', 'MD13G1207100' => 'mdo', 'MD16G1208600' => 'mdo', 'Medtr1g050352' => 'mtr', 'Medtr1g070385' => 'mtr', 'Medtr1g070450' => 'mtr', 'Medtr1g075200' => 'mtr', 'Medtr1g075250' => 'mtr', 'Medtr1g075260' => 'mtr', 'Medtr1g475250' => 'mtr', 'Medtr4g075450' => 'mtr', 'Medtr7g096300' => 'mtr', 'Medtr8g105110' => 'mtr', 'MELO3C006470.2' => 'cme', 'MELO3C006471.2' => 'cme', 'MELO3C020772.2' => 'cme', 'MELO3C026780.2' => 'cme', 'MELO3C026781.2' => 'cme', 'Migut.D00390' => 'egut', 'Migut.G00435' => 'egut', 'Migut.G00436' => 'egut', 'Migut.G00718' => 'egut', 'MSTRG.21891' => 'ama', 'MSTRG.26910' => 'ama', 'MSTRG.4099' => 'ama', 'MSTRG.9925' => 'ama', 'Nitab4.5_0000165g0010' => 'nta', 'Nitab4.5_0000209g0180' => 'nta', 'Nitab4.5_0000244g0440' => 'nta', 'Nitab4.5_0000525g0220' => 'nta', 'Nitab4.5_0001597g0020' => 'nta', 'Nitab4.5_0001878g0040' => 'nta', 'Nitab4.5_0001878g0060' => 'nta', 'Nitab4.5_0002838g0100' => 'nta', 'Nitab4.5_0002838g0120' => 'nta', 'Nitab4.5_0004798g0030' => 'nta', 'Nitab4.5_0005420g0010' => 'nta', 'Nitab4.5_0005507g0010' => 'nta', 'Nitab4.5_0005574g0020' => 'nta', 'Nitab4.5_0005838g0010' => 'nta', 'Nitab4.5_0010580g0020' => 'nta', 'Nn1g02599' => 'nnu', 'Nn1g02608' => 'nnu', 'Nn3g17742' => 'nnu', 'Nn3g19534' => 'nnu', 'Nn3g19535' => 'nnu', 'Oeu008790.1' => 'oeu', 'Oeu008792.1' => 'oeu', 'Oeu032590.1' => 'oeu', 'Oeu035349.1' => 'oeu', 'Oeu049791.1' => 'oeu', 'Os01g0774500' => 'osa', 'Os03g0628800' => 'osa', 'Os03g0798600' => 'osa', 'Os05g0508800' => 'osa', 'Peaxi162Scf00036g02018' => 'pax', 'Peaxi162Scf00578g00032' => 'pax', 'Peaxi162Scf00578g00317' => 'pax', 'Peaxi162Scf00785g00114' => 'pax', 'Peaxi162Scf00813g00119' => 'pax', 'Peaxi162Scf00906g00227' => 'pax', 'PGR004G0875' => 'pgr', 'PGR004G2424' => 'pgr', 'PGR031G1239' => 'pgr', 'PGR031G2474' => 'pgr', 'PGR044G0423' => 'pgr', 'PGSC0003DMG400001128' => 'stu', 'PGSC0003DMG400007336' => 'stu', 'PGSC0003DMG400016318' => 'stu', 'PGSC0003DMG400016319' => 'stu', 'PGSC0003DMG400018074' => 'stu', 'Phvul.001G157700' => 'pvu', 'Phvul.002G148550' => 'pvu', 'Phvul.002G320200' => 'pvu', 'Phvul.003G089200' => 'pvu', 'Phvul.007G126000' => 'pvu', 'Phvul.007G126100' => 'pvu', 'Phvul.007G178000' => 'pvu', 'Phvul.007G178200' => 'pvu', 'Potri.002G043000' => 'ptr', 'Potri.002G043200' => 'ptr', 'Potri.003G123750' => 'ptr', 'Potri.005G055401' => 'ptr', 'Potri.005G219700' => 'ptr', 'Potri.005G220000' => 'ptr', 'Potri.008G161901' => 'ptr', 'Potri.008G162000' => 'ptr', 'Potri.008G162400' => 'ptr', 'Potri.010G076900' => 'ptr', 'Pp3c12_9180' => 'ppa', 'Pp3c13_19770' => 'ppa', 'Pp3c14_22950' => 'ppa', 'Pp3c16_12160' => 'ppa', 'Pp3c27_7820' => 'ppa', 'Pp3c2_3490' => 'ppa', 'Pp3c3_23700' => 'ppa', 'Pp3c3_36520' => 'ppa', 'Pp3c4_15250' => 'ppa', 'PRCOL_00007002' => 'pco', 'Prupe.1G030600' => 'ppe', 'Prupe.1G030700' => 'ppe', 'Prupe.6G345200' => 'ppe', 'Prupe.8G230300' => 'ppe', 'Prupe.8G230500' => 'ppe', 'Psat3g059600' => 'psa', 'Psat5g200920' => 'psa', 'Psat6g056440' => 'psa', 'Psat6g057360' => 'psa', 'Psat6g134120' => 'psa', 'Psat6g134160' => 'psa', 'Psat7g008640' => 'psa', 'Psat7g185240' => 'psa', 'PSO017G1330' => 'pso', 'PSO063G6097' => 'pso', 'PSO170G0835' => 'pso', 'PSO170G2499' => 'pso', 'PSO210G5058' => 'pso', 'PSO210G6154' => 'pso', 'PSO585G0031' => 'pso', 'PSO832G0264' => 'pso', 'PSO832G4288' => 'pso', 'QL03p027355' => 'qlo', 'QL03p027430' => 'qlo', 'QL04p081380' => 'qlo', 'QL06p015642' => 'qlo', 'QL06p015650' => 'qlo', 'QL06p015686' => 'qlo', 'QL12p042927' => 'qlo', 'QL93p1863_0035' => 'qlo', 'RcHm_v2.0_Chr3g0450581' => 'rch', 'RcHm_v2.0_Chr4g0390371' => 'rch', 'RcHm_v2.0_Chr4g0390381' => 'rch', 'RcHm_v2.0_Chr4g0390491' => 'rch', 'RcHm_v2.0_Chr4g0390501' => 'rch', 'RcHm_v2.0_Chr6g0289231' => 'rch', 'Rhsim04G0190400' => 'rsi', 'Rhsim04G0190500' => 'rsi', 'Rhsim04G0190600' => 'rsi', 'Rhsim13G0031400' => 'rsi', 'Rhsim13G0165600' => 'rsi', 'RhsimUnG0114600' => 'rsi', 'RhsimUnG0114700' => 'rsi', 'Sabra02G0034800' => 'sbr', 'Sabra02G0035100' => 'sbr', 'Sabra05G0168600' => 'sbr', 'Sabra05G0168800' => 'sbr', 'Sabra08G0123700' => 'sbr', 'Sabra10G0031900' => 'sbr', 'Sabra13G0039000' => 'sbr', 'SalBow2G0782' => 'sbo', 'SalBow2G1403' => 'sbo', 'SalBow4G0074' => 'sbo', 'SalBow4G2635' => 'sbo', 'SalBow5G3010' => 'sbo', 'Sc05g0000870' => 'sci', 'Sc05g0000890' => 'sci', 'Sc13g0005000' => 'sci', 'Sc13g0005030' => 'sci', 'Sc19g0003790' => 'sci', 'Sc19g0003800' => 'sci', 'Sed0003467' => 'sed', 'Sed0009355' => 'sed', 'Sed0009894' => 'sed', 'Sed0011972' => 'sed', 'Sed0021483' => 'sed', 'Sed0021750' => 'sed', 'Sed0026279' => 'sed', 'SEGI_05312' => 'sgi', 'SEGI_10112' => 'sgi', 'SEGI_15835' => 'sgi', 'SEGI_30386' => 'sgi', 'SEGI_34122' => 'sgi', 'SEGI_35063' => 'sgi', 'SGA_v2.0_scaffold101G29794' => 'sas', 'SGA_v2.0_scaffold1G00573' => 'sas', 'SGA_v2.0_scaffold79G25637' => 'sas', 'SGA_v2.0_scaffold88G27283' => 'sas', 'SGA_v2.0_scaffold88G27285' => 'sas', 'SGA_v2.0_scaffold88G27331' => 'sas', 'SHI09937' => 'shi', 'SMO119G0302' => 'smo', 'SMO137G0231' => 'smo', 'SMO367G1151' => 'smo', 'Solyc02g082000.3' => 'sly', 'Solyc06g031670.3' => 'sly', 'Solyc06g053810.3' => 'sly', 'Solyc07g025457.1' => 'sly', 'Solyc08g059740.1' => 'sly', 'Solyc08g059750.3' => 'sly', 'Solyc09g083370.3' => 'sly', 'Solyc12g038950.3' => 'sly', 'Sopen02g026630' => 'spe', 'Sopen06g018930' => 'spe', 'Sopen06g018940' => 'spe', 'Sopen08g009460' => 'spe', 'Sopen09g032290' => 'spe', 'Sp1g03080' => 'spa', 'Sp1g03090' => 'spa', 'Sp1g05480' => 'spa', 'Sp2g07860' => 'spa', 'Sp2g08430' => 'spa', 'Sp2g08440' => 'spa', 'Sp2g26200' => 'spa', 'Sp4g13170' => 'spa', 'Sp6g33840' => 'spa', 'SpUn1204_0010' => 'spa', 'TAR365G0908' => 'tar', 'TAR381G1270' => 'tar', 'TAR381G1651' => 'tar', 'TAR625G1131' => 'tar', 'TAR633G0962' => 'tar', 'TAR633G1729' => 'tar', 'TAR633G1864' => 'tar', 'TAR636G0221' => 'tar', 'TAR636G0314' => 'tar', 'TAR636G3202' => 'tar', 'THA.LOC104800805' => 'tha', 'THA.LOC104801096' => 'tha', 'THA.LOC104801555' => 'tha', 'THA.LOC104808491' => 'tha', 'THA.LOC104808595' => 'tha', 'THA.LOC104815985' => 'tha', 'THA.LOC104822250' => 'tha', 'THA.LOC104826071' => 'tha', 'Thecc.01G265200' => 'tca', 'Thecc.01G265300' => 'tca', 'Thecc.01G265700' => 'tca', 'Thecc.03G109100' => 'tca', 'Thecc.04G245900' => 'tca', 'Thecc.04G246000' => 'tca', 'Thhalv10003334m.g' => 'esa', 'Thhalv10005508m.g' => 'esa', 'Thhalv10005643m.g' => 'esa', 'Thhalv10007316m.g' => 'esa', 'Thhalv10009006m.g' => 'esa', 'Thhalv10009309m.g' => 'esa', 'Thhalv10014917m.g' => 'esa', 'Thhalv10014919m.g' => 'esa', 'Thhalv10015393m.g' => 'esa', 'Thhalv10016515m.g' => 'esa', 'Thhalv10029242m.g' => 'esa', 'TPR.G16654' => 'tpr', 'TPR.G20589' => 'tpr', 'TPR.G23029' => 'tpr', 'TPR.G27731' => 'tpr', 'TPR.G28889' => 'tpr', 'TPR.G28899' => 'tpr', 'TPR.G30846' => 'tpr', 'TPR.G5452' => 'tpr', 'TPR.G5713' => 'tpr', 'TPR.G9046' => 'tpr', 'TPR.G9061' => 'tpr', 'TWI09G1075' => 'twi', 'TWI12G0806' => 'twi', 'TWI18G0108' => 'twi', 'TWI53G1361' => 'twi', 'TWI73G0185' => 'twi', 'TWI73G0427' => 'twi', 'unitig_37.g12001' => 'ugi', 'unitig_747.g21660' => 'ugi', 'unitig_748.g7232' => 'ugi', 'unitig_748.g7315' => 'ugi', 'unitig_85.g27262' => 'ugi', 'unitig_92.g28220' => 'ugi', 'vmacro02632' => 'vma', 'vmacro08410' => 'vma', 'vmacro08411' => 'vma', 'vmacro15407' => 'vma', 'VMungo0251G3619' => 'vmu', 'VMungo0720G1204' => 'vmu', 'VMungo0720G1918' => 'vmu', 'VMungo0720G2387' => 'vmu', 'VMungo0720G2961' => 'vmu', 'VMungo1215G2154' => 'vmu', 'VMungo1383G2411' => 'vmu', 'Zm00001eb051130' => 'zma', 'Zm00001eb116830' => 'zma', 'Zm00001eb116850' => 'zma', 'Zm00001eb151740' => 'zma', 'Zm00001eb292360' => 'zma', 'Zm00001eb301640' => 'zma' ), 'gf_id' => 'HOM05D000856', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000856' ), 'data_identifier' => 'HOM05D000856', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000856', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p00010' => 'bna', 'A03p04160' => 'bna', 'A03p17160' => 'bna', 'A04p23370' => 'bna', 'A05p14860' => 'bna', 'A08p37020' => 'bna', 'A09p08050' => 'bna', 'A09p66800' => 'bna', 'A09p67940' => 'bna', 'A10p02680' => 'bna', 'A10p05320' => 'bna', 'Aa31LG1G20560' => 'aar', 'Aa31LG1G20610' => 'aar', 'Aa31LG1G7810' => 'aar', 'Aa31LG5G3590' => 'aar', 'Aa31LG5G6140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3819' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4683' => 'aag', 'Actinidia04480' => 'ach', 'Actinidia05466' => 'ach', 'Actinidia08445' => 'ach', 'Actinidia21170' => 'ach', 'Actinidia24812' => 'ach', 'Actinidia24951' => 'ach', 'Actinidia40088' => 'ach', 'Ah.02g111660' => 'amhyb', 'Ah.11g048900' => 'amhyb', 'Ah.11g049910' => 'amhyb', 'AL1G13870' => 'aly', 'AL1G13880' => 'aly', 'AL1G16760' => 'aly', 'AL390U10020' => 'aly', 'AL4G25520' => 'aly', 'AL6G19890' => 'aly', 'AL6G19900' => 'aly', 'AL6G19910' => 'aly', 'AL8G40100' => 'aly', 'Aqoxy2G03562' => 'aox', 'Aqoxy5G00316' => 'aox', 'Aqoxy5G00926' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1628KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1H403S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2FU6SJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.882I6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8YRY2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YN1SN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AF70II' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZA8L1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F916KL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHRD8H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KTZ8QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S22EMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8M29T' => 'arhy', 'AT1G04270' => 'ath', 'AT1G04280' => 'ath', 'AT1G06750' => 'ath', 'AT1G33850' => 'ath', 'AT2G30630' => 'ath', 'AT5G09490' => 'ath', 'AT5G09500' => 'ath', 'AT5G09510' => 'ath', 'AT5G43640' => 'ath', 'AT5G63070' => 'ath', 'ATR0605G315' => 'atr', 'Atru.chr11.175' => 'acertr', 'Atru.chr11.653' => 'acertr', 'Atru.chr3.1616' => 'acertr', 'Atru.chr4.2230' => 'acertr', 'Atru.chr4.2232' => 'acertr', 'Atru.chr5.1598' => 'acertr', 'Atru.chr5.1600' => 'acertr', 'Atru.chr5.2188' => 'acertr', 'AUR62008326' => 'cqu', 'AUR62011922' => 'cqu', 'AUR62011924' => 'cqu', 'AUR62021771' => 'cqu', 'AUR62032237' => 'cqu', 'AUR62032240' => 'cqu', 'BcaB01g05572' => 'bca', 'BcaB02g10337' => 'bca', 'BcaB04g19944' => 'bca', 'BcaB05g21548' => 'bca', 'BcaB05g21549' => 'bca', 'BcaB05g23227' => 'bca', 'BcaB06g26256' => 'bca', 'BcaB06g26257' => 'bca', 'BcaB06g28379' => 'bca', 'BcaC02g11159' => 'bca', 'BcaC03g13258' => 'bca', 'BcaC03g13259' => 'bca', 'BcaC05g24456' => 'bca', 'BcaC05g24457' => 'bca', 'BcaC07g36922' => 'bca', 'BcaC07g36923' => 'bca', 'BcaC07g42050' => 'bca', 'BcaC07g42176' => 'bca', 'BcaC07g42195' => 'bca', 'BcaC07g42196' => 'bca', 'BcaNung06674' => 'bca', 'BolC2t06351H' => 'bol', 'BolC2t06352H' => 'bol', 'BolC3t12993H' => 'bol', 'BolC4t23525H' => 'bol', 'BolC4t27475H' => 'bol', 'BolC5t29025H' => 'bol', 'BolC5t29026H' => 'bol', 'BolC8t46898H' => 'bol', 'BolC8t46899H' => 'bol', 'BolC8t52630H' => 'bol', 'BolC8t52765H' => 'bol', 'BolC9t53824H' => 'bol', 'BraA03t09760Z' => 'bra', 'BraA03t10990Z' => 'bra', 'BraA05t20413Z' => 'bra', 'BraA08t35602Z' => 'bra', 'BraA09t36458Z' => 'bra', 'BraA09t42018Z' => 'bra', 'BraA09t42129Z' => 'bra', 'BraA10t42536Z' => 'bra', 'BraA10t42537Z' => 'bra', 'C01p10690' => 'bna', 'C02p03890' => 'bna', 'C02p03900' => 'bna', 'C03p04620' => 'bna', 'C04p19870' => 'bna', 'C04p59670' => 'bna', 'C05p02460' => 'bna', 'C05p02470' => 'bna', 'C08p00980' => 'bna', 'C08p00990' => 'bna', 'C08p51030' => 'bna', 'C08p52360' => 'bna', 'C09p09120' => 'bna', 'CAN.G19.15' => 'can', 'CAN.G251.10' => 'can', 'CAN.G251.9' => 'can', 'CAN.G398.24' => 'can', 'CAN.G410.32' => 'can', 'CAN.G881.2' => 'can', 'CANSAT01G3025' => 'cansat', 'CANSAT78G1211' => 'cansat', 'CANSAT78G1218' => 'cansat', 'CANSAT78G1521' => 'cansat', 'CANSAT78G1670' => 'cansat', 'CARHR003600' => 'chi', 'CARHR003610' => 'chi', 'CARHR006290' => 'chi', 'CARHR006430' => 'chi', 'CARHR124110' => 'chi', 'CARHR203870' => 'chi', 'CARHR203880' => 'chi', 'CARHR203890' => 'chi', 'CARHR276880' => 'chi', 'Carub.0001s0346' => 'cru', 'Carub.0001s0347' => 'cru', 'Carub.0001s0607' => 'cru', 'Carub.0003s2768' => 'cru', 'Carub.0003s2769' => 'cru', 'Carub.0004s1178' => 'cru', 'Carub.0006s0806' => 'cru', 'Carub.0006s0807' => 'cru', 'Carub.0006s0808' => 'cru', 'Carub.0008s0501' => 'cru', 'Carub.0008s2379' => 'cru', 'Ca_08655_v3' => 'car', 'Ca_08922_v3' => 'car', 'Ca_08923_v3' => 'car', 'Ca_09119_v3' => 'car', 'Ca_09703_v3' => 'car', 'Ca_09705_v3' => 'car', 'Ca_09835_v3' => 'car', 'Ca_26403_v3' => 'car', 'Ca_30719_v3' => 'car', 'CBR_g17958' => 'cbr', 'CBR_g40516' => 'cbr', 'Cc00_g05350' => 'ccan', 'Cc01_g18690' => 'ccan', 'Cc03_g04830' => 'ccan', 'Cc03_g04850' => 'ccan', 'CDE02G4469' => 'cde', 'CDE06G0883' => 'cde', 'CDE06G1295' => 'cde', 'CDE06G1390' => 'cde', 'CDE07G0584' => 'cde', 'CDE07G1084' => 'cde', 'CDE08G1259' => 'cde', 'Cfa002341' => 'cfa', 'Cfa024337' => 'cfa', 'Ciclev10004749m.g' => 'ccl', 'Ciclev10006127m.g' => 'ccl', 'Ciclev10019720m.g' => 'ccl', 'Ciclev10022652m.g' => 'ccl', 'CiPaw.01G190400' => 'cil', 'CiPaw.01G190500' => 'cil', 'CiPaw.02G116400' => 'cil', 'CiPaw.02G116500' => 'cil', 'CiPaw.04G183000' => 'cil', 'CiPaw.04G183300' => 'cil', 'ClCG05G004610' => 'cla', 'ClCG05G004620' => 'cla', 'ClCG06G006730' => 'cla', 'ClCG06G006740' => 'cla', 'ClCG11G003690' => 'cla', 'COL.COLO4_08276' => 'col', 'COL.COLO4_08277' => 'col', 'COL.COLO4_15787' => 'col', 'COL.COLO4_15789' => 'col', 'Cpa.g.c44815' => 'cpa', 'Cpa.g.sc52.144' => 'cpa', 'Cpa.g.sc58.46' => 'cpa', 'Cpa.g.sc58.47' => 'cpa', 'Cre08.g360900' => 'cre', 'CsaV3_2G013030' => 'csa', 'CsaV3_2G013050' => 'csa', 'CsaV3_2G015620' => 'csa', 'CsaV3_3G012590' => 'csa', 'CsaV3_3G012600' => 'csa', 'CSS0001641' => 'camsi', 'CSS0008310' => 'camsi', 'CSS0013011' => 'camsi', 'CSS0017147' => 'camsi', 'CSS0022970' => 'camsi', 'CSS0025655' => 'camsi', 'CSS0028665' => 'camsi', 'CSS0029117' => 'camsi', 'CSS0032024' => 'camsi', 'CSS0039681' => 'camsi', 'CSS0046516' => 'camsi', 'CSS0050307' => 'camsi', 'DCAR_005871' => 'dca', 'DCAR_007342' => 'dca', 'DCAR_024228' => 'dca', 'DCAR_027277' => 'dca', 'DCAR_030718' => 'dca', 'Dinv20287' => 'din', 'Dinv22461' => 'din', 'Dinv22464' => 'din', 'Dinv29912' => 'din', 'Dinv29913' => 'din', 'Dinv34580' => 'din', 'Dinv34582' => 'din', 'Dinv44632' => 'din', 'Duzib052G0266' => 'dzi', 'Duzib133G0907' => 'dzi', 'Duzib133G1034' => 'dzi', 'Duzib138G0207' => 'dzi', 'Duzib138G0491' => 'dzi', 'Duzib151G0812' => 'dzi', 'Duzib151G1166' => 'dzi', 'Duzib168G0192' => 'dzi', 'Duzib211G0077' => 'dzi', 'Duzib212G0429' => 'dzi', 'Duzib212G0472' => 'dzi', 'ECA233G2617' => 'eca', 'ECA236G4188' => 'eca', 'ECA240G0936' => 'eca', 'ECA240G1129' => 'eca', 'ECA247G0623' => 'eca', 'EL10Ac5g10451' => 'bvu', 'EL10Ac5g10453' => 'bvu', 'EL10Ac5g10894' => 'bvu', 'Eucgr.H00192' => 'egr', 'Eucgr.H00193' => 'egr', 'Eucgr.H00194' => 'egr', 'Eucgr.J01562' => 'egr', 'Eucgr.K03301' => 'egr', 'FAN02G0632' => 'fan', 'FAN05G5378' => 'fan', 'FAN09G3247' => 'fan', 'FAN12G0435' => 'fan', 'FAN12G2426' => 'fan', 'FAN14G1707' => 'fan', 'FAN14G4725' => 'fan', 'FAN15G2071' => 'fan', 'FAN17G3065' => 'fan', 'FAN19G1376' => 'fan', 'FAN20G0354' => 'fan', 'FAN20G2429' => 'fan', 'FAN20G2658' => 'fan', 'FAN24G2343' => 'fan', 'FAN27G2362' => 'fan', 'FAN28G1765' => 'fan', 'FvH4_1g16020' => 'fve', 'FvH4_2g04890' => 'fve', 'FvH4_2g22270' => 'fve', 'FvH4_4g02630' => 'fve', 'FvH4_4g02640' => 'fve', 'FvH4_6g02650' => 'fve', 'Glyma.02G140600' => 'gma', 'Glyma.03G159900' => 'gma', 'Glyma.05G234800' => 'gma', 'Glyma.07G269600' => 'gma', 'Glyma.08G042300' => 'gma', 'Glyma.10G033500' => 'gma', 'Glyma.10G185200' => 'gma', 'Glyma.17G004300' => 'gma', 'Glyma.19G161900' => 'gma', 'Glyma.20G205100' => 'gma', 'Glyma.20G205200' => 'gma', 'Gohir.A01G139101' => 'ghi', 'Gohir.A02G035600' => 'ghi', 'Gohir.A02G117901' => 'ghi', 'Gohir.A07G210100' => 'ghi', 'Gohir.A07G210200' => 'ghi', 'Gohir.A08G061100' => 'ghi', 'Gohir.A09G223000' => 'ghi', 'Gohir.A09G223100' => 'ghi', 'Gohir.A10G113900' => 'ghi', 'Gohir.A10G114000' => 'ghi', 'Gohir.D02G042300' => 'ghi', 'Gohir.D07G216100' => 'ghi', 'Gohir.D07G216200' => 'ghi', 'Gohir.D08G070400' => 'ghi', 'Gohir.D09G225000' => 'ghi', 'Gohir.D09G225100' => 'ghi', 'Gohir.D10G152300' => 'ghi', 'Gohir.D10G153200' => 'ghi', 'Gohir.D11G133701' => 'ghi', 'Gorai.004G074100' => 'gra', 'Gorai.005G046800' => 'gra', 'Gorai.006G246500' => 'gra', 'Gorai.006G246600' => 'gra', 'Gorai.007G142900' => 'gra', 'Gorai.011G171000' => 'gra', 'Gorai.011G171100' => 'gra', 'Gorai.013G104300' => 'gra', 'Gorai.013G104400' => 'gra', 'GSVIVG01000754001' => 'vvi', 'GSVIVG01000756001' => 'vvi', 'GSVIVG01010903001' => 'vvi', 'GSVIVG01017623001' => 'vvi', 'GSVIVG01018113001' => 'vvi', 'GSVIVG01018116001' => 'vvi', 'GSVIVG01018118001' => 'vvi', 'HanXRQChr03g0076211' => 'han', 'HanXRQChr03g0092431' => 'han', 'HanXRQChr03g0092441' => 'han', 'HanXRQChr03g0092591' => 'han', 'HanXRQChr03g0092671' => 'han', 'HanXRQChr03g0092681' => 'han', 'HanXRQChr03g0092691' => 'han', 'HanXRQChr03g0092701' => 'han', 'HanXRQChr03g0092721' => 'han', 'HanXRQChr03g0092731' => 'han', 'HanXRQChr04g0113681' => 'han', 'HanXRQChr10g0281371' => 'han', 'HanXRQChr11g0337141' => 'han', 'HanXRQChr13g0424521' => 'han', 'HanXRQChr13g0424531' => 'han', 'HanXRQChr13g0424541' => 'han', 'HanXRQChr16g0498221' => 'han', 'Haze_04377' => 'cav', 'Haze_11298' => 'cav', 'Haze_24547' => 'cav', 'Haze_24550' => 'cav', 'Haze_26587' => 'cav', 'Hma1.2p1_0650F.1_g195410' => 'hma', 'Hma1.2p1_0893F.1_g233470' => 'hma', 'HPP92_006508' => 'vpl', 'HPP92_024780' => 'vpl', 'Hund02688' => 'sun', 'Hund09380' => 'sun', 'Hund09381' => 'sun', 'Hund09832' => 'sun', 'Hund09833' => 'sun', 'Hund11351' => 'sun', 'Hund11513' => 'sun', 'Lalb_Chr06g0162591' => 'lal', 'Lalb_Chr06g0162601' => 'lal', 'Lalb_Chr06g0169321' => 'lal', 'Lalb_Chr09g0330951' => 'lal', 'Lalb_Chr16g0387631' => 'lal', 'Lalb_Chr21g0306241' => 'lal', 'Lalb_Chr25g0290051' => 'lal', 'Lalb_Chr25g0290061' => 'lal', 'Lalb_Chr25g0290071' => 'lal', 'Lj1g0003876' => 'lja', 'Lj1P1207T36' => 'lonja', 'Lj2C1156G12' => 'lonja', 'Lj3A793G39' => 'lonja', 'Lj3C580G2' => 'lonja', 'Lj3C780G2' => 'lonja', 'Lj3C780T4' => 'lonja', 'Lj3C793G9' => 'lonja', 'Lj4g0012960' => 'lja', 'Lj5g0021252' => 'lja', 'Lj5g0021484' => 'lja', 'Lj5g0024528' => 'lja', 'Lj6A399T12' => 'lonja', 'Lj6A656G65' => 'lonja', 'Lsat_1_v5_gn_3_125500' => 'lsa', 'Lsat_1_v5_gn_3_125540' => 'lsa', 'Lsat_1_v5_gn_5_72701' => 'lsa', 'Lsat_1_v5_gn_8_91560' => 'lsa', 'Lsat_1_v5_gn_9_9640' => 'lsa', 'Manes.01G200600' => 'mes', 'Manes.01G200700' => 'mes', 'Manes.03G168900' => 'mes', 'Manes.03G169000' => 'mes', 'Manes.05G085801' => 'mes', 'Manes.05G086200' => 'mes', 'Manes.15G036700' => 'mes', 'Manes.15G036900' => 'mes', 'Mapoly0004s0172' => 'mpo', 'Mapoly0023s0001' => 'mpo', 'Mapoly0142s0012' => 'mpo', 'MBI01_g32854_MAGBIO' => 'mbi', 'MBI11_g24427_MAGBIO' => 'mbi', 'MBI11_g47319_MAGBIO' => 'mbi', 'MCO01G433' => 'mco', 'MD00G1187800' => 'mdo', 'MD04G1226500' => 'mdo', 'MD05G1203900' => 'mdo', 'MD10G1191100' => 'mdo', 'MD12G1243500' => 'mdo', 'MD13G1207000' => 'mdo', 'MD13G1207100' => 'mdo', 'MD16G1208600' => 'mdo', 'Medtr1g050352' => 'mtr', 'Medtr1g070385' => 'mtr', 'Medtr1g070450' => 'mtr', 'Medtr1g075200' => 'mtr', 'Medtr1g075250' => 'mtr', 'Medtr1g075260' => 'mtr', 'Medtr1g475250' => 'mtr', 'Medtr4g075450' => 'mtr', 'Medtr7g096300' => 'mtr', 'Medtr8g105110' => 'mtr', 'MELO3C006470.2' => 'cme', 'MELO3C006471.2' => 'cme', 'MELO3C020772.2' => 'cme', 'MELO3C026780.2' => 'cme', 'MELO3C026781.2' => 'cme', 'Migut.D00390' => 'egut', 'Migut.G00435' => 'egut', 'Migut.G00436' => 'egut', 'Migut.G00718' => 'egut', 'MSTRG.21891' => 'ama', 'MSTRG.26910' => 'ama', 'MSTRG.4099' => 'ama', 'MSTRG.9925' => 'ama', 'Nitab4.5_0000165g0010' => 'nta', 'Nitab4.5_0000209g0180' => 'nta', 'Nitab4.5_0000244g0440' => 'nta', 'Nitab4.5_0000525g0220' => 'nta', 'Nitab4.5_0001597g0020' => 'nta', 'Nitab4.5_0001878g0040' => 'nta', 'Nitab4.5_0001878g0060' => 'nta', 'Nitab4.5_0002838g0100' => 'nta', 'Nitab4.5_0002838g0120' => 'nta', 'Nitab4.5_0004798g0030' => 'nta', 'Nitab4.5_0005420g0010' => 'nta', 'Nitab4.5_0005507g0010' => 'nta', 'Nitab4.5_0005574g0020' => 'nta', 'Nitab4.5_0005838g0010' => 'nta', 'Nitab4.5_0010580g0020' => 'nta', 'Nn1g02599' => 'nnu', 'Nn1g02608' => 'nnu', 'Nn3g17742' => 'nnu', 'Nn3g19534' => 'nnu', 'Nn3g19535' => 'nnu', 'Oeu008790.1' => 'oeu', 'Oeu008792.1' => 'oeu', 'Oeu032590.1' => 'oeu', 'Oeu035349.1' => 'oeu', 'Oeu049791.1' => 'oeu', 'Os01g0774500' => 'osa', 'Os03g0628800' => 'osa', 'Os03g0798600' => 'osa', 'Os05g0508800' => 'osa', 'Peaxi162Scf00036g02018' => 'pax', 'Peaxi162Scf00578g00032' => 'pax', 'Peaxi162Scf00578g00317' => 'pax', 'Peaxi162Scf00785g00114' => 'pax', 'Peaxi162Scf00813g00119' => 'pax', 'Peaxi162Scf00906g00227' => 'pax', 'PGR004G0875' => 'pgr', 'PGR004G2424' => 'pgr', 'PGR031G1239' => 'pgr', 'PGR031G2474' => 'pgr', 'PGR044G0423' => 'pgr', 'PGSC0003DMG400001128' => 'stu', 'PGSC0003DMG400007336' => 'stu', 'PGSC0003DMG400016318' => 'stu', 'PGSC0003DMG400016319' => 'stu', 'PGSC0003DMG400018074' => 'stu', 'Phvul.001G157700' => 'pvu', 'Phvul.002G148550' => 'pvu', 'Phvul.002G320200' => 'pvu', 'Phvul.003G089200' => 'pvu', 'Phvul.007G126000' => 'pvu', 'Phvul.007G126100' => 'pvu', 'Phvul.007G178000' => 'pvu', 'Phvul.007G178200' => 'pvu', 'Potri.002G043000' => 'ptr', 'Potri.002G043200' => 'ptr', 'Potri.003G123750' => 'ptr', 'Potri.005G055401' => 'ptr', 'Potri.005G219700' => 'ptr', 'Potri.005G220000' => 'ptr', 'Potri.008G161901' => 'ptr', 'Potri.008G162000' => 'ptr', 'Potri.008G162400' => 'ptr', 'Potri.010G076900' => 'ptr', 'Pp3c12_9180' => 'ppa', 'Pp3c13_19770' => 'ppa', 'Pp3c14_22950' => 'ppa', 'Pp3c16_12160' => 'ppa', 'Pp3c27_7820' => 'ppa', 'Pp3c2_3490' => 'ppa', 'Pp3c3_23700' => 'ppa', 'Pp3c3_36520' => 'ppa', 'Pp3c4_15250' => 'ppa', 'PRCOL_00007002' => 'pco', 'Prupe.1G030600' => 'ppe', 'Prupe.1G030700' => 'ppe', 'Prupe.6G345200' => 'ppe', 'Prupe.8G230300' => 'ppe', 'Prupe.8G230500' => 'ppe', 'Psat3g059600' => 'psa', 'Psat5g200920' => 'psa', 'Psat6g056440' => 'psa', 'Psat6g057360' => 'psa', 'Psat6g134120' => 'psa', 'Psat6g134160' => 'psa', 'Psat7g008640' => 'psa', 'Psat7g185240' => 'psa', 'PSO017G1330' => 'pso', 'PSO063G6097' => 'pso', 'PSO170G0835' => 'pso', 'PSO170G2499' => 'pso', 'PSO210G5058' => 'pso', 'PSO210G6154' => 'pso', 'PSO585G0031' => 'pso', 'PSO832G0264' => 'pso', 'PSO832G4288' => 'pso', 'QL03p027355' => 'qlo', 'QL03p027430' => 'qlo', 'QL04p081380' => 'qlo', 'QL06p015642' => 'qlo', 'QL06p015650' => 'qlo', 'QL06p015686' => 'qlo', 'QL12p042927' => 'qlo', 'QL93p1863_0035' => 'qlo', 'RcHm_v2.0_Chr3g0450581' => 'rch', 'RcHm_v2.0_Chr4g0390371' => 'rch', 'RcHm_v2.0_Chr4g0390381' => 'rch', 'RcHm_v2.0_Chr4g0390491' => 'rch', 'RcHm_v2.0_Chr4g0390501' => 'rch', 'RcHm_v2.0_Chr6g0289231' => 'rch', 'Rhsim04G0190400' => 'rsi', 'Rhsim04G0190500' => 'rsi', 'Rhsim04G0190600' => 'rsi', 'Rhsim13G0031400' => 'rsi', 'Rhsim13G0165600' => 'rsi', 'RhsimUnG0114600' => 'rsi', 'RhsimUnG0114700' => 'rsi', 'Sabra02G0034800' => 'sbr', 'Sabra02G0035100' => 'sbr', 'Sabra05G0168600' => 'sbr', 'Sabra05G0168800' => 'sbr', 'Sabra08G0123700' => 'sbr', 'Sabra10G0031900' => 'sbr', 'Sabra13G0039000' => 'sbr', 'SalBow2G0782' => 'sbo', 'SalBow2G1403' => 'sbo', 'SalBow4G0074' => 'sbo', 'SalBow4G2635' => 'sbo', 'SalBow5G3010' => 'sbo', 'Sc05g0000870' => 'sci', 'Sc05g0000890' => 'sci', 'Sc13g0005000' => 'sci', 'Sc13g0005030' => 'sci', 'Sc19g0003790' => 'sci', 'Sc19g0003800' => 'sci', 'Sed0003467' => 'sed', 'Sed0009355' => 'sed', 'Sed0009894' => 'sed', 'Sed0011972' => 'sed', 'Sed0021483' => 'sed', 'Sed0021750' => 'sed', 'Sed0026279' => 'sed', 'SEGI_05312' => 'sgi', 'SEGI_10112' => 'sgi', 'SEGI_15835' => 'sgi', 'SEGI_30386' => 'sgi', 'SEGI_34122' => 'sgi', 'SEGI_35063' => 'sgi', 'SGA_v2.0_scaffold101G29794' => 'sas', 'SGA_v2.0_scaffold1G00573' => 'sas', 'SGA_v2.0_scaffold79G25637' => 'sas', 'SGA_v2.0_scaffold88G27283' => 'sas', 'SGA_v2.0_scaffold88G27285' => 'sas', 'SGA_v2.0_scaffold88G27331' => 'sas', 'SHI09937' => 'shi', 'SMO119G0302' => 'smo', 'SMO137G0231' => 'smo', 'SMO367G1151' => 'smo', 'Solyc02g082000.3' => 'sly', 'Solyc06g031670.3' => 'sly', 'Solyc06g053810.3' => 'sly', 'Solyc07g025457.1' => 'sly', 'Solyc08g059740.1' => 'sly', 'Solyc08g059750.3' => 'sly', 'Solyc09g083370.3' => 'sly', 'Solyc12g038950.3' => 'sly', 'Sopen02g026630' => 'spe', 'Sopen06g018930' => 'spe', 'Sopen06g018940' => 'spe', 'Sopen08g009460' => 'spe', 'Sopen09g032290' => 'spe', 'Sp1g03080' => 'spa', 'Sp1g03090' => 'spa', 'Sp1g05480' => 'spa', 'Sp2g07860' => 'spa', 'Sp2g08430' => 'spa', 'Sp2g08440' => 'spa', 'Sp2g26200' => 'spa', 'Sp4g13170' => 'spa', 'Sp6g33840' => 'spa', 'SpUn1204_0010' => 'spa', 'TAR365G0908' => 'tar', 'TAR381G1270' => 'tar', 'TAR381G1651' => 'tar', 'TAR625G1131' => 'tar', 'TAR633G0962' => 'tar', 'TAR633G1729' => 'tar', 'TAR633G1864' => 'tar', 'TAR636G0221' => 'tar', 'TAR636G0314' => 'tar', 'TAR636G3202' => 'tar', 'THA.LOC104800805' => 'tha', 'THA.LOC104801096' => 'tha', 'THA.LOC104801555' => 'tha', 'THA.LOC104808491' => 'tha', 'THA.LOC104808595' => 'tha', 'THA.LOC104815985' => 'tha', 'THA.LOC104822250' => 'tha', 'THA.LOC104826071' => 'tha', 'Thecc.01G265200' => 'tca', 'Thecc.01G265300' => 'tca', 'Thecc.01G265700' => 'tca', 'Thecc.03G109100' => 'tca', 'Thecc.04G245900' => 'tca', 'Thecc.04G246000' => 'tca', 'Thhalv10003334m.g' => 'esa', 'Thhalv10005508m.g' => 'esa', 'Thhalv10005643m.g' => 'esa', 'Thhalv10007316m.g' => 'esa', 'Thhalv10009006m.g' => 'esa', 'Thhalv10009309m.g' => 'esa', 'Thhalv10014917m.g' => 'esa', 'Thhalv10014919m.g' => 'esa', 'Thhalv10015393m.g' => 'esa', 'Thhalv10016515m.g' => 'esa', 'Thhalv10029242m.g' => 'esa', 'TPR.G16654' => 'tpr', 'TPR.G20589' => 'tpr', 'TPR.G23029' => 'tpr', 'TPR.G27731' => 'tpr', 'TPR.G28889' => 'tpr', 'TPR.G28899' => 'tpr', 'TPR.G30846' => 'tpr', 'TPR.G5452' => 'tpr', 'TPR.G5713' => 'tpr', 'TPR.G9046' => 'tpr', 'TPR.G9061' => 'tpr', 'TWI09G1075' => 'twi', 'TWI12G0806' => 'twi', 'TWI18G0108' => 'twi', 'TWI53G1361' => 'twi', 'TWI73G0185' => 'twi', 'TWI73G0427' => 'twi', 'unitig_37.g12001' => 'ugi', 'unitig_747.g21660' => 'ugi', 'unitig_748.g7232' => 'ugi', 'unitig_748.g7315' => 'ugi', 'unitig_85.g27262' => 'ugi', 'unitig_92.g28220' => 'ugi', 'vmacro02632' => 'vma', 'vmacro08410' => 'vma', 'vmacro08411' => 'vma', 'vmacro15407' => 'vma', 'VMungo0251G3619' => 'vmu', 'VMungo0720G1204' => 'vmu', 'VMungo0720G1918' => 'vmu', 'VMungo0720G2387' => 'vmu', 'VMungo0720G2961' => 'vmu', 'VMungo1215G2154' => 'vmu', 'VMungo1383G2411' => 'vmu', 'Zm00001eb051130' => 'zma', 'Zm00001eb116830' => 'zma', 'Zm00001eb116850' => 'zma', 'Zm00001eb151740' => 'zma', 'Zm00001eb292360' => 'zma', 'Zm00001eb301640' => 'zma' ) $gf_id = 'HOM05D000856' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000856' ) $data_identifier = 'HOM05D000856' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 13, 'ath' => (int) 10, 'atr' => (int) 1, 'acertr' => (int) 8, 'cqu' => (int) 6, 'bca' => (int) 21, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 11, 'car' => (int) 9, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 8, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 5, 'fan' => (int) 16, 'fve' => (int) 6, 'gma' => (int) 11, 'ghi' => (int) 19, 'gra' => (int) 9, 'vvi' => (int) 7, 'han' => (int) 17, 'cav' => (int) 5, 'hma' => (int) 2, 'vpl' => (int) 2, 'sun' => (int) 7, 'lal' => (int) 9, 'lja' => (int) 5, 'lonja' => (int) 9, 'lsa' => (int) 5, 'mes' => (int) 8, 'mpo' => (int) 3, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 10, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 15, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 9, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 9, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 6, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 5, 'spa' => (int) 10, 'tar' => (int) 10, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 11, 'tpr' => (int) 11, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 4, 'vmu' => (int) 7, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb301640' $species_info = array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ) $local_species = 'sed' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000856', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p00010' => 'bna', 'A03p04160' => 'bna', 'A03p17160' => 'bna', 'A04p23370' => 'bna', 'A05p14860' => 'bna', 'A08p37020' => 'bna', 'A09p08050' => 'bna', 'A09p66800' => 'bna', 'A09p67940' => 'bna', 'A10p02680' => 'bna', 'A10p05320' => 'bna', 'Aa31LG1G20560' => 'aar', 'Aa31LG1G20610' => 'aar', 'Aa31LG1G7810' => 'aar', 'Aa31LG5G3590' => 'aar', 'Aa31LG5G6140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3819' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4683' => 'aag', 'Actinidia04480' => 'ach', 'Actinidia05466' => 'ach', 'Actinidia08445' => 'ach', 'Actinidia21170' => 'ach', 'Actinidia24812' => 'ach', 'Actinidia24951' => 'ach', 'Actinidia40088' => 'ach', 'Ah.02g111660' => 'amhyb', 'Ah.11g048900' => 'amhyb', 'Ah.11g049910' => 'amhyb', 'AL1G13870' => 'aly', 'AL1G13880' => 'aly', 'AL1G16760' => 'aly', 'AL390U10020' => 'aly', 'AL4G25520' => 'aly', 'AL6G19890' => 'aly', 'AL6G19900' => 'aly', 'AL6G19910' => 'aly', 'AL8G40100' => 'aly', 'Aqoxy2G03562' => 'aox', 'Aqoxy5G00316' => 'aox', 'Aqoxy5G00926' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1628KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1H403S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2FU6SJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.882I6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8YRY2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YN1SN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AF70II' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZA8L1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F916KL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHRD8H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KTZ8QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S22EMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8M29T' => 'arhy', 'AT1G04270' => 'ath', 'AT1G04280' => 'ath', 'AT1G06750' => 'ath', 'AT1G33850' => 'ath', 'AT2G30630' => 'ath', 'AT5G09490' => 'ath', 'AT5G09500' => 'ath', 'AT5G09510' => 'ath', 'AT5G43640' => 'ath', 'AT5G63070' => 'ath', 'ATR0605G315' => 'atr', 'Atru.chr11.175' => 'acertr', 'Atru.chr11.653' => 'acertr', 'Atru.chr3.1616' => 'acertr', 'Atru.chr4.2230' => 'acertr', 'Atru.chr4.2232' => 'acertr', 'Atru.chr5.1598' => 'acertr', 'Atru.chr5.1600' => 'acertr', 'Atru.chr5.2188' => 'acertr', 'AUR62008326' => 'cqu', 'AUR62011922' => 'cqu', 'AUR62011924' => 'cqu', 'AUR62021771' => 'cqu', 'AUR62032237' => 'cqu', 'AUR62032240' => 'cqu', 'BcaB01g05572' => 'bca', 'BcaB02g10337' => 'bca', 'BcaB04g19944' => 'bca', 'BcaB05g21548' => 'bca', 'BcaB05g21549' => 'bca', 'BcaB05g23227' => 'bca', 'BcaB06g26256' => 'bca', 'BcaB06g26257' => 'bca', 'BcaB06g28379' => 'bca', 'BcaC02g11159' => 'bca', 'BcaC03g13258' => 'bca', 'BcaC03g13259' => 'bca', 'BcaC05g24456' => 'bca', 'BcaC05g24457' => 'bca', 'BcaC07g36922' => 'bca', 'BcaC07g36923' => 'bca', 'BcaC07g42050' => 'bca', 'BcaC07g42176' => 'bca', 'BcaC07g42195' => 'bca', 'BcaC07g42196' => 'bca', 'BcaNung06674' => 'bca', 'BolC2t06351H' => 'bol', 'BolC2t06352H' => 'bol', 'BolC3t12993H' => 'bol', 'BolC4t23525H' => 'bol', 'BolC4t27475H' => 'bol', 'BolC5t29025H' => 'bol', 'BolC5t29026H' => 'bol', 'BolC8t46898H' => 'bol', 'BolC8t46899H' => 'bol', 'BolC8t52630H' => 'bol', 'BolC8t52765H' => 'bol', 'BolC9t53824H' => 'bol', 'BraA03t09760Z' => 'bra', 'BraA03t10990Z' => 'bra', 'BraA05t20413Z' => 'bra', 'BraA08t35602Z' => 'bra', 'BraA09t36458Z' => 'bra', 'BraA09t42018Z' => 'bra', 'BraA09t42129Z' => 'bra', 'BraA10t42536Z' => 'bra', 'BraA10t42537Z' => 'bra', 'C01p10690' => 'bna', 'C02p03890' => 'bna', 'C02p03900' => 'bna', 'C03p04620' => 'bna', 'C04p19870' => 'bna', 'C04p59670' => 'bna', 'C05p02460' => 'bna', 'C05p02470' => 'bna', 'C08p00980' => 'bna', 'C08p00990' => 'bna', 'C08p51030' => 'bna', 'C08p52360' => 'bna', 'C09p09120' => 'bna', 'CAN.G19.15' => 'can', 'CAN.G251.10' => 'can', 'CAN.G251.9' => 'can', 'CAN.G398.24' => 'can', 'CAN.G410.32' => 'can', 'CAN.G881.2' => 'can', 'CANSAT01G3025' => 'cansat', 'CANSAT78G1211' => 'cansat', 'CANSAT78G1218' => 'cansat', 'CANSAT78G1521' => 'cansat', 'CANSAT78G1670' => 'cansat', 'CARHR003600' => 'chi', 'CARHR003610' => 'chi', 'CARHR006290' => 'chi', 'CARHR006430' => 'chi', 'CARHR124110' => 'chi', 'CARHR203870' => 'chi', 'CARHR203880' => 'chi', 'CARHR203890' => 'chi', 'CARHR276880' => 'chi', 'Carub.0001s0346' => 'cru', 'Carub.0001s0347' => 'cru', 'Carub.0001s0607' => 'cru', 'Carub.0003s2768' => 'cru', 'Carub.0003s2769' => 'cru', 'Carub.0004s1178' => 'cru', 'Carub.0006s0806' => 'cru', 'Carub.0006s0807' => 'cru', 'Carub.0006s0808' => 'cru', 'Carub.0008s0501' => 'cru', 'Carub.0008s2379' => 'cru', 'Ca_08655_v3' => 'car', 'Ca_08922_v3' => 'car', 'Ca_08923_v3' => 'car', 'Ca_09119_v3' => 'car', 'Ca_09703_v3' => 'car', 'Ca_09705_v3' => 'car', 'Ca_09835_v3' => 'car', 'Ca_26403_v3' => 'car', 'Ca_30719_v3' => 'car', 'CBR_g17958' => 'cbr', 'CBR_g40516' => 'cbr', 'Cc00_g05350' => 'ccan', 'Cc01_g18690' => 'ccan', 'Cc03_g04830' => 'ccan', 'Cc03_g04850' => 'ccan', 'CDE02G4469' => 'cde', 'CDE06G0883' => 'cde', 'CDE06G1295' => 'cde', 'CDE06G1390' => 'cde', 'CDE07G0584' => 'cde', 'CDE07G1084' => 'cde', 'CDE08G1259' => 'cde', 'Cfa002341' => 'cfa', 'Cfa024337' => 'cfa', 'Ciclev10004749m.g' => 'ccl', 'Ciclev10006127m.g' => 'ccl', 'Ciclev10019720m.g' => 'ccl', 'Ciclev10022652m.g' => 'ccl', 'CiPaw.01G190400' => 'cil', 'CiPaw.01G190500' => 'cil', 'CiPaw.02G116400' => 'cil', 'CiPaw.02G116500' => 'cil', 'CiPaw.04G183000' => 'cil', 'CiPaw.04G183300' => 'cil', 'ClCG05G004610' => 'cla', 'ClCG05G004620' => 'cla', 'ClCG06G006730' => 'cla', 'ClCG06G006740' => 'cla', 'ClCG11G003690' => 'cla', 'COL.COLO4_08276' => 'col', 'COL.COLO4_08277' => 'col', 'COL.COLO4_15787' => 'col', 'COL.COLO4_15789' => 'col', 'Cpa.g.c44815' => 'cpa', 'Cpa.g.sc52.144' => 'cpa', 'Cpa.g.sc58.46' => 'cpa', 'Cpa.g.sc58.47' => 'cpa', 'Cre08.g360900' => 'cre', 'CsaV3_2G013030' => 'csa', 'CsaV3_2G013050' => 'csa', 'CsaV3_2G015620' => 'csa', 'CsaV3_3G012590' => 'csa', 'CsaV3_3G012600' => 'csa', 'CSS0001641' => 'camsi', 'CSS0008310' => 'camsi', 'CSS0013011' => 'camsi', 'CSS0017147' => 'camsi', 'CSS0022970' => 'camsi', 'CSS0025655' => 'camsi', 'CSS0028665' => 'camsi', 'CSS0029117' => 'camsi', 'CSS0032024' => 'camsi', 'CSS0039681' => 'camsi', 'CSS0046516' => 'camsi', 'CSS0050307' => 'camsi', 'DCAR_005871' => 'dca', 'DCAR_007342' => 'dca', 'DCAR_024228' => 'dca', 'DCAR_027277' => 'dca', 'DCAR_030718' => 'dca', 'Dinv20287' => 'din', 'Dinv22461' => 'din', 'Dinv22464' => 'din', 'Dinv29912' => 'din', 'Dinv29913' => 'din', 'Dinv34580' => 'din', 'Dinv34582' => 'din', 'Dinv44632' => 'din', 'Duzib052G0266' => 'dzi', 'Duzib133G0907' => 'dzi', 'Duzib133G1034' => 'dzi', 'Duzib138G0207' => 'dzi', 'Duzib138G0491' => 'dzi', 'Duzib151G0812' => 'dzi', 'Duzib151G1166' => 'dzi', 'Duzib168G0192' => 'dzi', 'Duzib211G0077' => 'dzi', 'Duzib212G0429' => 'dzi', 'Duzib212G0472' => 'dzi', 'ECA233G2617' => 'eca', 'ECA236G4188' => 'eca', 'ECA240G0936' => 'eca', 'ECA240G1129' => 'eca', 'ECA247G0623' => 'eca', 'EL10Ac5g10451' => 'bvu', 'EL10Ac5g10453' => 'bvu', 'EL10Ac5g10894' => 'bvu', 'Eucgr.H00192' => 'egr', 'Eucgr.H00193' => 'egr', 'Eucgr.H00194' => 'egr', 'Eucgr.J01562' => 'egr', 'Eucgr.K03301' => 'egr', 'FAN02G0632' => 'fan', 'FAN05G5378' => 'fan', 'FAN09G3247' => 'fan', 'FAN12G0435' => 'fan', 'FAN12G2426' => 'fan', 'FAN14G1707' => 'fan', 'FAN14G4725' => 'fan', 'FAN15G2071' => 'fan', 'FAN17G3065' => 'fan', 'FAN19G1376' => 'fan', 'FAN20G0354' => 'fan', 'FAN20G2429' => 'fan', 'FAN20G2658' => 'fan', 'FAN24G2343' => 'fan', 'FAN27G2362' => 'fan', 'FAN28G1765' => 'fan', 'FvH4_1g16020' => 'fve', 'FvH4_2g04890' => 'fve', 'FvH4_2g22270' => 'fve', 'FvH4_4g02630' => 'fve', 'FvH4_4g02640' => 'fve', 'FvH4_6g02650' => 'fve', 'Glyma.02G140600' => 'gma', 'Glyma.03G159900' => 'gma', 'Glyma.05G234800' => 'gma', 'Glyma.07G269600' => 'gma', 'Glyma.08G042300' => 'gma', 'Glyma.10G033500' => 'gma', 'Glyma.10G185200' => 'gma', 'Glyma.17G004300' => 'gma', 'Glyma.19G161900' => 'gma', 'Glyma.20G205100' => 'gma', 'Glyma.20G205200' => 'gma', 'Gohir.A01G139101' => 'ghi', 'Gohir.A02G035600' => 'ghi', 'Gohir.A02G117901' => 'ghi', 'Gohir.A07G210100' => 'ghi', 'Gohir.A07G210200' => 'ghi', 'Gohir.A08G061100' => 'ghi', 'Gohir.A09G223000' => 'ghi', 'Gohir.A09G223100' => 'ghi', 'Gohir.A10G113900' => 'ghi', 'Gohir.A10G114000' => 'ghi', 'Gohir.D02G042300' => 'ghi', 'Gohir.D07G216100' => 'ghi', 'Gohir.D07G216200' => 'ghi', 'Gohir.D08G070400' => 'ghi', 'Gohir.D09G225000' => 'ghi', 'Gohir.D09G225100' => 'ghi', 'Gohir.D10G152300' => 'ghi', 'Gohir.D10G153200' => 'ghi', 'Gohir.D11G133701' => 'ghi', 'Gorai.004G074100' => 'gra', 'Gorai.005G046800' => 'gra', 'Gorai.006G246500' => 'gra', 'Gorai.006G246600' => 'gra', 'Gorai.007G142900' => 'gra', 'Gorai.011G171000' => 'gra', 'Gorai.011G171100' => 'gra', 'Gorai.013G104300' => 'gra', 'Gorai.013G104400' => 'gra', 'GSVIVG01000754001' => 'vvi', 'GSVIVG01000756001' => 'vvi', 'GSVIVG01010903001' => 'vvi', 'GSVIVG01017623001' => 'vvi', 'GSVIVG01018113001' => 'vvi', 'GSVIVG01018116001' => 'vvi', 'GSVIVG01018118001' => 'vvi', 'HanXRQChr03g0076211' => 'han', 'HanXRQChr03g0092431' => 'han', 'HanXRQChr03g0092441' => 'han', 'HanXRQChr03g0092591' => 'han', 'HanXRQChr03g0092671' => 'han', 'HanXRQChr03g0092681' => 'han', 'HanXRQChr03g0092691' => 'han', 'HanXRQChr03g0092701' => 'han', 'HanXRQChr03g0092721' => 'han', 'HanXRQChr03g0092731' => 'han', 'HanXRQChr04g0113681' => 'han', 'HanXRQChr10g0281371' => 'han', 'HanXRQChr11g0337141' => 'han', 'HanXRQChr13g0424521' => 'han', 'HanXRQChr13g0424531' => 'han', 'HanXRQChr13g0424541' => 'han', 'HanXRQChr16g0498221' => 'han', 'Haze_04377' => 'cav', 'Haze_11298' => 'cav', 'Haze_24547' => 'cav', 'Haze_24550' => 'cav', 'Haze_26587' => 'cav', 'Hma1.2p1_0650F.1_g195410' => 'hma', 'Hma1.2p1_0893F.1_g233470' => 'hma', 'HPP92_006508' => 'vpl', 'HPP92_024780' => 'vpl', 'Hund02688' => 'sun', 'Hund09380' => 'sun', 'Hund09381' => 'sun', 'Hund09832' => 'sun', 'Hund09833' => 'sun', 'Hund11351' => 'sun', 'Hund11513' => 'sun', 'Lalb_Chr06g0162591' => 'lal', 'Lalb_Chr06g0162601' => 'lal', 'Lalb_Chr06g0169321' => 'lal', 'Lalb_Chr09g0330951' => 'lal', 'Lalb_Chr16g0387631' => 'lal', 'Lalb_Chr21g0306241' => 'lal', 'Lalb_Chr25g0290051' => 'lal', 'Lalb_Chr25g0290061' => 'lal', 'Lalb_Chr25g0290071' => 'lal', 'Lj1g0003876' => 'lja', 'Lj1P1207T36' => 'lonja', 'Lj2C1156G12' => 'lonja', 'Lj3A793G39' => 'lonja', 'Lj3C580G2' => 'lonja', 'Lj3C780G2' => 'lonja', 'Lj3C780T4' => 'lonja', 'Lj3C793G9' => 'lonja', 'Lj4g0012960' => 'lja', 'Lj5g0021252' => 'lja', 'Lj5g0021484' => 'lja', 'Lj5g0024528' => 'lja', 'Lj6A399T12' => 'lonja', 'Lj6A656G65' => 'lonja', 'Lsat_1_v5_gn_3_125500' => 'lsa', 'Lsat_1_v5_gn_3_125540' => 'lsa', 'Lsat_1_v5_gn_5_72701' => 'lsa', 'Lsat_1_v5_gn_8_91560' => 'lsa', 'Lsat_1_v5_gn_9_9640' => 'lsa', 'Manes.01G200600' => 'mes', 'Manes.01G200700' => 'mes', 'Manes.03G168900' => 'mes', 'Manes.03G169000' => 'mes', 'Manes.05G085801' => 'mes', 'Manes.05G086200' => 'mes', 'Manes.15G036700' => 'mes', 'Manes.15G036900' => 'mes', 'Mapoly0004s0172' => 'mpo', 'Mapoly0023s0001' => 'mpo', 'Mapoly0142s0012' => 'mpo', 'MBI01_g32854_MAGBIO' => 'mbi', 'MBI11_g24427_MAGBIO' => 'mbi', 'MBI11_g47319_MAGBIO' => 'mbi', 'MCO01G433' => 'mco', 'MD00G1187800' => 'mdo', 'MD04G1226500' => 'mdo', 'MD05G1203900' => 'mdo', 'MD10G1191100' => 'mdo', 'MD12G1243500' => 'mdo', 'MD13G1207000' => 'mdo', 'MD13G1207100' => 'mdo', 'MD16G1208600' => 'mdo', 'Medtr1g050352' => 'mtr', 'Medtr1g070385' => 'mtr', 'Medtr1g070450' => 'mtr', 'Medtr1g075200' => 'mtr', 'Medtr1g075250' => 'mtr', 'Medtr1g075260' => 'mtr', 'Medtr1g475250' => 'mtr', 'Medtr4g075450' => 'mtr', 'Medtr7g096300' => 'mtr', 'Medtr8g105110' => 'mtr', 'MELO3C006470.2' => 'cme', 'MELO3C006471.2' => 'cme', 'MELO3C020772.2' => 'cme', 'MELO3C026780.2' => 'cme', 'MELO3C026781.2' => 'cme', 'Migut.D00390' => 'egut', 'Migut.G00435' => 'egut', 'Migut.G00436' => 'egut', 'Migut.G00718' => 'egut', 'MSTRG.21891' => 'ama', 'MSTRG.26910' => 'ama', 'MSTRG.4099' => 'ama', 'MSTRG.9925' => 'ama', 'Nitab4.5_0000165g0010' => 'nta', 'Nitab4.5_0000209g0180' => 'nta', 'Nitab4.5_0000244g0440' => 'nta', 'Nitab4.5_0000525g0220' => 'nta', 'Nitab4.5_0001597g0020' => 'nta', 'Nitab4.5_0001878g0040' => 'nta', 'Nitab4.5_0001878g0060' => 'nta', 'Nitab4.5_0002838g0100' => 'nta', 'Nitab4.5_0002838g0120' => 'nta', 'Nitab4.5_0004798g0030' => 'nta', 'Nitab4.5_0005420g0010' => 'nta', 'Nitab4.5_0005507g0010' => 'nta', 'Nitab4.5_0005574g0020' => 'nta', 'Nitab4.5_0005838g0010' => 'nta', 'Nitab4.5_0010580g0020' => 'nta', 'Nn1g02599' => 'nnu', 'Nn1g02608' => 'nnu', 'Nn3g17742' => 'nnu', 'Nn3g19534' => 'nnu', 'Nn3g19535' => 'nnu', 'Oeu008790.1' => 'oeu', 'Oeu008792.1' => 'oeu', 'Oeu032590.1' => 'oeu', 'Oeu035349.1' => 'oeu', 'Oeu049791.1' => 'oeu', 'Os01g0774500' => 'osa', 'Os03g0628800' => 'osa', 'Os03g0798600' => 'osa', 'Os05g0508800' => 'osa', 'Peaxi162Scf00036g02018' => 'pax', 'Peaxi162Scf00578g00032' => 'pax', 'Peaxi162Scf00578g00317' => 'pax', 'Peaxi162Scf00785g00114' => 'pax', 'Peaxi162Scf00813g00119' => 'pax', 'Peaxi162Scf00906g00227' => 'pax', 'PGR004G0875' => 'pgr', 'PGR004G2424' => 'pgr', 'PGR031G1239' => 'pgr', 'PGR031G2474' => 'pgr', 'PGR044G0423' => 'pgr', 'PGSC0003DMG400001128' => 'stu', 'PGSC0003DMG400007336' => 'stu', 'PGSC0003DMG400016318' => 'stu', 'PGSC0003DMG400016319' => 'stu', 'PGSC0003DMG400018074' => 'stu', 'Phvul.001G157700' => 'pvu', 'Phvul.002G148550' => 'pvu', 'Phvul.002G320200' => 'pvu', 'Phvul.003G089200' => 'pvu', 'Phvul.007G126000' => 'pvu', 'Phvul.007G126100' => 'pvu', 'Phvul.007G178000' => 'pvu', 'Phvul.007G178200' => 'pvu', 'Potri.002G043000' => 'ptr', 'Potri.002G043200' => 'ptr', 'Potri.003G123750' => 'ptr', 'Potri.005G055401' => 'ptr', 'Potri.005G219700' => 'ptr', 'Potri.005G220000' => 'ptr', 'Potri.008G161901' => 'ptr', 'Potri.008G162000' => 'ptr', 'Potri.008G162400' => 'ptr', 'Potri.010G076900' => 'ptr', 'Pp3c12_9180' => 'ppa', 'Pp3c13_19770' => 'ppa', 'Pp3c14_22950' => 'ppa', 'Pp3c16_12160' => 'ppa', 'Pp3c27_7820' => 'ppa', 'Pp3c2_3490' => 'ppa', 'Pp3c3_23700' => 'ppa', 'Pp3c3_36520' => 'ppa', 'Pp3c4_15250' => 'ppa', 'PRCOL_00007002' => 'pco', 'Prupe.1G030600' => 'ppe', 'Prupe.1G030700' => 'ppe', 'Prupe.6G345200' => 'ppe', 'Prupe.8G230300' => 'ppe', 'Prupe.8G230500' => 'ppe', 'Psat3g059600' => 'psa', 'Psat5g200920' => 'psa', 'Psat6g056440' => 'psa', 'Psat6g057360' => 'psa', 'Psat6g134120' => 'psa', 'Psat6g134160' => 'psa', 'Psat7g008640' => 'psa', 'Psat7g185240' => 'psa', 'PSO017G1330' => 'pso', 'PSO063G6097' => 'pso', 'PSO170G0835' => 'pso', 'PSO170G2499' => 'pso', 'PSO210G5058' => 'pso', 'PSO210G6154' => 'pso', 'PSO585G0031' => 'pso', 'PSO832G0264' => 'pso', 'PSO832G4288' => 'pso', 'QL03p027355' => 'qlo', 'QL03p027430' => 'qlo', 'QL04p081380' => 'qlo', 'QL06p015642' => 'qlo', 'QL06p015650' => 'qlo', 'QL06p015686' => 'qlo', 'QL12p042927' => 'qlo', 'QL93p1863_0035' => 'qlo', 'RcHm_v2.0_Chr3g0450581' => 'rch', 'RcHm_v2.0_Chr4g0390371' => 'rch', 'RcHm_v2.0_Chr4g0390381' => 'rch', 'RcHm_v2.0_Chr4g0390491' => 'rch', 'RcHm_v2.0_Chr4g0390501' => 'rch', 'RcHm_v2.0_Chr6g0289231' => 'rch', 'Rhsim04G0190400' => 'rsi', 'Rhsim04G0190500' => 'rsi', 'Rhsim04G0190600' => 'rsi', 'Rhsim13G0031400' => 'rsi', 'Rhsim13G0165600' => 'rsi', 'RhsimUnG0114600' => 'rsi', 'RhsimUnG0114700' => 'rsi', 'Sabra02G0034800' => 'sbr', 'Sabra02G0035100' => 'sbr', 'Sabra05G0168600' => 'sbr', 'Sabra05G0168800' => 'sbr', 'Sabra08G0123700' => 'sbr', 'Sabra10G0031900' => 'sbr', 'Sabra13G0039000' => 'sbr', 'SalBow2G0782' => 'sbo', 'SalBow2G1403' => 'sbo', 'SalBow4G0074' => 'sbo', 'SalBow4G2635' => 'sbo', 'SalBow5G3010' => 'sbo', 'Sc05g0000870' => 'sci', 'Sc05g0000890' => 'sci', 'Sc13g0005000' => 'sci', 'Sc13g0005030' => 'sci', 'Sc19g0003790' => 'sci', 'Sc19g0003800' => 'sci', 'Sed0003467' => 'sed', 'Sed0009355' => 'sed', 'Sed0009894' => 'sed', 'Sed0011972' => 'sed', 'Sed0021483' => 'sed', 'Sed0021750' => 'sed', 'Sed0026279' => 'sed', 'SEGI_05312' => 'sgi', 'SEGI_10112' => 'sgi', 'SEGI_15835' => 'sgi', 'SEGI_30386' => 'sgi', 'SEGI_34122' => 'sgi', 'SEGI_35063' => 'sgi', 'SGA_v2.0_scaffold101G29794' => 'sas', 'SGA_v2.0_scaffold1G00573' => 'sas', 'SGA_v2.0_scaffold79G25637' => 'sas', 'SGA_v2.0_scaffold88G27283' => 'sas', 'SGA_v2.0_scaffold88G27285' => 'sas', 'SGA_v2.0_scaffold88G27331' => 'sas', 'SHI09937' => 'shi', 'SMO119G0302' => 'smo', 'SMO137G0231' => 'smo', 'SMO367G1151' => 'smo', 'Solyc02g082000.3' => 'sly', 'Solyc06g031670.3' => 'sly', 'Solyc06g053810.3' => 'sly', 'Solyc07g025457.1' => 'sly', 'Solyc08g059740.1' => 'sly', 'Solyc08g059750.3' => 'sly', 'Solyc09g083370.3' => 'sly', 'Solyc12g038950.3' => 'sly', 'Sopen02g026630' => 'spe', 'Sopen06g018930' => 'spe', 'Sopen06g018940' => 'spe', 'Sopen08g009460' => 'spe', 'Sopen09g032290' => 'spe', 'Sp1g03080' => 'spa', 'Sp1g03090' => 'spa', 'Sp1g05480' => 'spa', 'Sp2g07860' => 'spa', 'Sp2g08430' => 'spa', 'Sp2g08440' => 'spa', 'Sp2g26200' => 'spa', 'Sp4g13170' => 'spa', 'Sp6g33840' => 'spa', 'SpUn1204_0010' => 'spa', 'TAR365G0908' => 'tar', 'TAR381G1270' => 'tar', 'TAR381G1651' => 'tar', 'TAR625G1131' => 'tar', 'TAR633G0962' => 'tar', 'TAR633G1729' => 'tar', 'TAR633G1864' => 'tar', 'TAR636G0221' => 'tar', 'TAR636G0314' => 'tar', 'TAR636G3202' => 'tar', 'THA.LOC104800805' => 'tha', 'THA.LOC104801096' => 'tha', 'THA.LOC104801555' => 'tha', 'THA.LOC104808491' => 'tha', 'THA.LOC104808595' => 'tha', 'THA.LOC104815985' => 'tha', 'THA.LOC104822250' => 'tha', 'THA.LOC104826071' => 'tha', 'Thecc.01G265200' => 'tca', 'Thecc.01G265300' => 'tca', 'Thecc.01G265700' => 'tca', 'Thecc.03G109100' => 'tca', 'Thecc.04G245900' => 'tca', 'Thecc.04G246000' => 'tca', 'Thhalv10003334m.g' => 'esa', 'Thhalv10005508m.g' => 'esa', 'Thhalv10005643m.g' => 'esa', 'Thhalv10007316m.g' => 'esa', 'Thhalv10009006m.g' => 'esa', 'Thhalv10009309m.g' => 'esa', 'Thhalv10014917m.g' => 'esa', 'Thhalv10014919m.g' => 'esa', 'Thhalv10015393m.g' => 'esa', 'Thhalv10016515m.g' => 'esa', 'Thhalv10029242m.g' => 'esa', 'TPR.G16654' => 'tpr', 'TPR.G20589' => 'tpr', 'TPR.G23029' => 'tpr', 'TPR.G27731' => 'tpr', 'TPR.G28889' => 'tpr', 'TPR.G28899' => 'tpr', 'TPR.G30846' => 'tpr', 'TPR.G5452' => 'tpr', 'TPR.G5713' => 'tpr', 'TPR.G9046' => 'tpr', 'TPR.G9061' => 'tpr', 'TWI09G1075' => 'twi', 'TWI12G0806' => 'twi', 'TWI18G0108' => 'twi', 'TWI53G1361' => 'twi', 'TWI73G0185' => 'twi', 'TWI73G0427' => 'twi', 'unitig_37.g12001' => 'ugi', 'unitig_747.g21660' => 'ugi', 'unitig_748.g7232' => 'ugi', 'unitig_748.g7315' => 'ugi', 'unitig_85.g27262' => 'ugi', 'unitig_92.g28220' => 'ugi', 'vmacro02632' => 'vma', 'vmacro08410' => 'vma', 'vmacro08411' => 'vma', 'vmacro15407' => 'vma', 'VMungo0251G3619' => 'vmu', 'VMungo0720G1204' => 'vmu', 'VMungo0720G1918' => 'vmu', 'VMungo0720G2387' => 'vmu', 'VMungo0720G2961' => 'vmu', 'VMungo1215G2154' => 'vmu', 'VMungo1383G2411' => 'vmu', 'Zm00001eb051130' => 'zma', 'Zm00001eb116830' => 'zma', 'Zm00001eb116850' => 'zma', 'Zm00001eb151740' => 'zma', 'Zm00001eb292360' => 'zma', 'Zm00001eb301640' => 'zma' ), 'gf_id' => 'HOM05D000856', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000856' ), 'data_identifier' => 'HOM05D000856', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000856', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p00010' => 'bna', 'A03p04160' => 'bna', 'A03p17160' => 'bna', 'A04p23370' => 'bna', 'A05p14860' => 'bna', 'A08p37020' => 'bna', 'A09p08050' => 'bna', 'A09p66800' => 'bna', 'A09p67940' => 'bna', 'A10p02680' => 'bna', 'A10p05320' => 'bna', 'Aa31LG1G20560' => 'aar', 'Aa31LG1G20610' => 'aar', 'Aa31LG1G7810' => 'aar', 'Aa31LG5G3590' => 'aar', 'Aa31LG5G6140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3819' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4683' => 'aag', 'Actinidia04480' => 'ach', 'Actinidia05466' => 'ach', 'Actinidia08445' => 'ach', 'Actinidia21170' => 'ach', 'Actinidia24812' => 'ach', 'Actinidia24951' => 'ach', 'Actinidia40088' => 'ach', 'Ah.02g111660' => 'amhyb', 'Ah.11g048900' => 'amhyb', 'Ah.11g049910' => 'amhyb', 'AL1G13870' => 'aly', 'AL1G13880' => 'aly', 'AL1G16760' => 'aly', 'AL390U10020' => 'aly', 'AL4G25520' => 'aly', 'AL6G19890' => 'aly', 'AL6G19900' => 'aly', 'AL6G19910' => 'aly', 'AL8G40100' => 'aly', 'Aqoxy2G03562' => 'aox', 'Aqoxy5G00316' => 'aox', 'Aqoxy5G00926' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1628KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1H403S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2FU6SJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.882I6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8YRY2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YN1SN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AF70II' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZA8L1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F916KL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHRD8H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KTZ8QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S22EMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8M29T' => 'arhy', 'AT1G04270' => 'ath', 'AT1G04280' => 'ath', 'AT1G06750' => 'ath', 'AT1G33850' => 'ath', 'AT2G30630' => 'ath', 'AT5G09490' => 'ath', 'AT5G09500' => 'ath', 'AT5G09510' => 'ath', 'AT5G43640' => 'ath', 'AT5G63070' => 'ath', 'ATR0605G315' => 'atr', 'Atru.chr11.175' => 'acertr', 'Atru.chr11.653' => 'acertr', 'Atru.chr3.1616' => 'acertr', 'Atru.chr4.2230' => 'acertr', 'Atru.chr4.2232' => 'acertr', 'Atru.chr5.1598' => 'acertr', 'Atru.chr5.1600' => 'acertr', 'Atru.chr5.2188' => 'acertr', 'AUR62008326' => 'cqu', 'AUR62011922' => 'cqu', 'AUR62011924' => 'cqu', 'AUR62021771' => 'cqu', 'AUR62032237' => 'cqu', 'AUR62032240' => 'cqu', 'BcaB01g05572' => 'bca', 'BcaB02g10337' => 'bca', 'BcaB04g19944' => 'bca', 'BcaB05g21548' => 'bca', 'BcaB05g21549' => 'bca', 'BcaB05g23227' => 'bca', 'BcaB06g26256' => 'bca', 'BcaB06g26257' => 'bca', 'BcaB06g28379' => 'bca', 'BcaC02g11159' => 'bca', 'BcaC03g13258' => 'bca', 'BcaC03g13259' => 'bca', 'BcaC05g24456' => 'bca', 'BcaC05g24457' => 'bca', 'BcaC07g36922' => 'bca', 'BcaC07g36923' => 'bca', 'BcaC07g42050' => 'bca', 'BcaC07g42176' => 'bca', 'BcaC07g42195' => 'bca', 'BcaC07g42196' => 'bca', 'BcaNung06674' => 'bca', 'BolC2t06351H' => 'bol', 'BolC2t06352H' => 'bol', 'BolC3t12993H' => 'bol', 'BolC4t23525H' => 'bol', 'BolC4t27475H' => 'bol', 'BolC5t29025H' => 'bol', 'BolC5t29026H' => 'bol', 'BolC8t46898H' => 'bol', 'BolC8t46899H' => 'bol', 'BolC8t52630H' => 'bol', 'BolC8t52765H' => 'bol', 'BolC9t53824H' => 'bol', 'BraA03t09760Z' => 'bra', 'BraA03t10990Z' => 'bra', 'BraA05t20413Z' => 'bra', 'BraA08t35602Z' => 'bra', 'BraA09t36458Z' => 'bra', 'BraA09t42018Z' => 'bra', 'BraA09t42129Z' => 'bra', 'BraA10t42536Z' => 'bra', 'BraA10t42537Z' => 'bra', 'C01p10690' => 'bna', 'C02p03890' => 'bna', 'C02p03900' => 'bna', 'C03p04620' => 'bna', 'C04p19870' => 'bna', 'C04p59670' => 'bna', 'C05p02460' => 'bna', 'C05p02470' => 'bna', 'C08p00980' => 'bna', 'C08p00990' => 'bna', 'C08p51030' => 'bna', 'C08p52360' => 'bna', 'C09p09120' => 'bna', 'CAN.G19.15' => 'can', 'CAN.G251.10' => 'can', 'CAN.G251.9' => 'can', 'CAN.G398.24' => 'can', 'CAN.G410.32' => 'can', 'CAN.G881.2' => 'can', 'CANSAT01G3025' => 'cansat', 'CANSAT78G1211' => 'cansat', 'CANSAT78G1218' => 'cansat', 'CANSAT78G1521' => 'cansat', 'CANSAT78G1670' => 'cansat', 'CARHR003600' => 'chi', 'CARHR003610' => 'chi', 'CARHR006290' => 'chi', 'CARHR006430' => 'chi', 'CARHR124110' => 'chi', 'CARHR203870' => 'chi', 'CARHR203880' => 'chi', 'CARHR203890' => 'chi', 'CARHR276880' => 'chi', 'Carub.0001s0346' => 'cru', 'Carub.0001s0347' => 'cru', 'Carub.0001s0607' => 'cru', 'Carub.0003s2768' => 'cru', 'Carub.0003s2769' => 'cru', 'Carub.0004s1178' => 'cru', 'Carub.0006s0806' => 'cru', 'Carub.0006s0807' => 'cru', 'Carub.0006s0808' => 'cru', 'Carub.0008s0501' => 'cru', 'Carub.0008s2379' => 'cru', 'Ca_08655_v3' => 'car', 'Ca_08922_v3' => 'car', 'Ca_08923_v3' => 'car', 'Ca_09119_v3' => 'car', 'Ca_09703_v3' => 'car', 'Ca_09705_v3' => 'car', 'Ca_09835_v3' => 'car', 'Ca_26403_v3' => 'car', 'Ca_30719_v3' => 'car', 'CBR_g17958' => 'cbr', 'CBR_g40516' => 'cbr', 'Cc00_g05350' => 'ccan', 'Cc01_g18690' => 'ccan', 'Cc03_g04830' => 'ccan', 'Cc03_g04850' => 'ccan', 'CDE02G4469' => 'cde', 'CDE06G0883' => 'cde', 'CDE06G1295' => 'cde', 'CDE06G1390' => 'cde', 'CDE07G0584' => 'cde', 'CDE07G1084' => 'cde', 'CDE08G1259' => 'cde', 'Cfa002341' => 'cfa', 'Cfa024337' => 'cfa', 'Ciclev10004749m.g' => 'ccl', 'Ciclev10006127m.g' => 'ccl', 'Ciclev10019720m.g' => 'ccl', 'Ciclev10022652m.g' => 'ccl', 'CiPaw.01G190400' => 'cil', 'CiPaw.01G190500' => 'cil', 'CiPaw.02G116400' => 'cil', 'CiPaw.02G116500' => 'cil', 'CiPaw.04G183000' => 'cil', 'CiPaw.04G183300' => 'cil', 'ClCG05G004610' => 'cla', 'ClCG05G004620' => 'cla', 'ClCG06G006730' => 'cla', 'ClCG06G006740' => 'cla', 'ClCG11G003690' => 'cla', 'COL.COLO4_08276' => 'col', 'COL.COLO4_08277' => 'col', 'COL.COLO4_15787' => 'col', 'COL.COLO4_15789' => 'col', 'Cpa.g.c44815' => 'cpa', 'Cpa.g.sc52.144' => 'cpa', 'Cpa.g.sc58.46' => 'cpa', 'Cpa.g.sc58.47' => 'cpa', 'Cre08.g360900' => 'cre', 'CsaV3_2G013030' => 'csa', 'CsaV3_2G013050' => 'csa', 'CsaV3_2G015620' => 'csa', 'CsaV3_3G012590' => 'csa', 'CsaV3_3G012600' => 'csa', 'CSS0001641' => 'camsi', 'CSS0008310' => 'camsi', 'CSS0013011' => 'camsi', 'CSS0017147' => 'camsi', 'CSS0022970' => 'camsi', 'CSS0025655' => 'camsi', 'CSS0028665' => 'camsi', 'CSS0029117' => 'camsi', 'CSS0032024' => 'camsi', 'CSS0039681' => 'camsi', 'CSS0046516' => 'camsi', 'CSS0050307' => 'camsi', 'DCAR_005871' => 'dca', 'DCAR_007342' => 'dca', 'DCAR_024228' => 'dca', 'DCAR_027277' => 'dca', 'DCAR_030718' => 'dca', 'Dinv20287' => 'din', 'Dinv22461' => 'din', 'Dinv22464' => 'din', 'Dinv29912' => 'din', 'Dinv29913' => 'din', 'Dinv34580' => 'din', 'Dinv34582' => 'din', 'Dinv44632' => 'din', 'Duzib052G0266' => 'dzi', 'Duzib133G0907' => 'dzi', 'Duzib133G1034' => 'dzi', 'Duzib138G0207' => 'dzi', 'Duzib138G0491' => 'dzi', 'Duzib151G0812' => 'dzi', 'Duzib151G1166' => 'dzi', 'Duzib168G0192' => 'dzi', 'Duzib211G0077' => 'dzi', 'Duzib212G0429' => 'dzi', 'Duzib212G0472' => 'dzi', 'ECA233G2617' => 'eca', 'ECA236G4188' => 'eca', 'ECA240G0936' => 'eca', 'ECA240G1129' => 'eca', 'ECA247G0623' => 'eca', 'EL10Ac5g10451' => 'bvu', 'EL10Ac5g10453' => 'bvu', 'EL10Ac5g10894' => 'bvu', 'Eucgr.H00192' => 'egr', 'Eucgr.H00193' => 'egr', 'Eucgr.H00194' => 'egr', 'Eucgr.J01562' => 'egr', 'Eucgr.K03301' => 'egr', 'FAN02G0632' => 'fan', 'FAN05G5378' => 'fan', 'FAN09G3247' => 'fan', 'FAN12G0435' => 'fan', 'FAN12G2426' => 'fan', 'FAN14G1707' => 'fan', 'FAN14G4725' => 'fan', 'FAN15G2071' => 'fan', 'FAN17G3065' => 'fan', 'FAN19G1376' => 'fan', 'FAN20G0354' => 'fan', 'FAN20G2429' => 'fan', 'FAN20G2658' => 'fan', 'FAN24G2343' => 'fan', 'FAN27G2362' => 'fan', 'FAN28G1765' => 'fan', 'FvH4_1g16020' => 'fve', 'FvH4_2g04890' => 'fve', 'FvH4_2g22270' => 'fve', 'FvH4_4g02630' => 'fve', 'FvH4_4g02640' => 'fve', 'FvH4_6g02650' => 'fve', 'Glyma.02G140600' => 'gma', 'Glyma.03G159900' => 'gma', 'Glyma.05G234800' => 'gma', 'Glyma.07G269600' => 'gma', 'Glyma.08G042300' => 'gma', 'Glyma.10G033500' => 'gma', 'Glyma.10G185200' => 'gma', 'Glyma.17G004300' => 'gma', 'Glyma.19G161900' => 'gma', 'Glyma.20G205100' => 'gma', 'Glyma.20G205200' => 'gma', 'Gohir.A01G139101' => 'ghi', 'Gohir.A02G035600' => 'ghi', 'Gohir.A02G117901' => 'ghi', 'Gohir.A07G210100' => 'ghi', 'Gohir.A07G210200' => 'ghi', 'Gohir.A08G061100' => 'ghi', 'Gohir.A09G223000' => 'ghi', 'Gohir.A09G223100' => 'ghi', 'Gohir.A10G113900' => 'ghi', 'Gohir.A10G114000' => 'ghi', 'Gohir.D02G042300' => 'ghi', 'Gohir.D07G216100' => 'ghi', 'Gohir.D07G216200' => 'ghi', 'Gohir.D08G070400' => 'ghi', 'Gohir.D09G225000' => 'ghi', 'Gohir.D09G225100' => 'ghi', 'Gohir.D10G152300' => 'ghi', 'Gohir.D10G153200' => 'ghi', 'Gohir.D11G133701' => 'ghi', 'Gorai.004G074100' => 'gra', 'Gorai.005G046800' => 'gra', 'Gorai.006G246500' => 'gra', 'Gorai.006G246600' => 'gra', 'Gorai.007G142900' => 'gra', 'Gorai.011G171000' => 'gra', 'Gorai.011G171100' => 'gra', 'Gorai.013G104300' => 'gra', 'Gorai.013G104400' => 'gra', 'GSVIVG01000754001' => 'vvi', 'GSVIVG01000756001' => 'vvi', 'GSVIVG01010903001' => 'vvi', 'GSVIVG01017623001' => 'vvi', 'GSVIVG01018113001' => 'vvi', 'GSVIVG01018116001' => 'vvi', 'GSVIVG01018118001' => 'vvi', 'HanXRQChr03g0076211' => 'han', 'HanXRQChr03g0092431' => 'han', 'HanXRQChr03g0092441' => 'han', 'HanXRQChr03g0092591' => 'han', 'HanXRQChr03g0092671' => 'han', 'HanXRQChr03g0092681' => 'han', 'HanXRQChr03g0092691' => 'han', 'HanXRQChr03g0092701' => 'han', 'HanXRQChr03g0092721' => 'han', 'HanXRQChr03g0092731' => 'han', 'HanXRQChr04g0113681' => 'han', 'HanXRQChr10g0281371' => 'han', 'HanXRQChr11g0337141' => 'han', 'HanXRQChr13g0424521' => 'han', 'HanXRQChr13g0424531' => 'han', 'HanXRQChr13g0424541' => 'han', 'HanXRQChr16g0498221' => 'han', 'Haze_04377' => 'cav', 'Haze_11298' => 'cav', 'Haze_24547' => 'cav', 'Haze_24550' => 'cav', 'Haze_26587' => 'cav', 'Hma1.2p1_0650F.1_g195410' => 'hma', 'Hma1.2p1_0893F.1_g233470' => 'hma', 'HPP92_006508' => 'vpl', 'HPP92_024780' => 'vpl', 'Hund02688' => 'sun', 'Hund09380' => 'sun', 'Hund09381' => 'sun', 'Hund09832' => 'sun', 'Hund09833' => 'sun', 'Hund11351' => 'sun', 'Hund11513' => 'sun', 'Lalb_Chr06g0162591' => 'lal', 'Lalb_Chr06g0162601' => 'lal', 'Lalb_Chr06g0169321' => 'lal', 'Lalb_Chr09g0330951' => 'lal', 'Lalb_Chr16g0387631' => 'lal', 'Lalb_Chr21g0306241' => 'lal', 'Lalb_Chr25g0290051' => 'lal', 'Lalb_Chr25g0290061' => 'lal', 'Lalb_Chr25g0290071' => 'lal', 'Lj1g0003876' => 'lja', 'Lj1P1207T36' => 'lonja', 'Lj2C1156G12' => 'lonja', 'Lj3A793G39' => 'lonja', 'Lj3C580G2' => 'lonja', 'Lj3C780G2' => 'lonja', 'Lj3C780T4' => 'lonja', 'Lj3C793G9' => 'lonja', 'Lj4g0012960' => 'lja', 'Lj5g0021252' => 'lja', 'Lj5g0021484' => 'lja', 'Lj5g0024528' => 'lja', 'Lj6A399T12' => 'lonja', 'Lj6A656G65' => 'lonja', 'Lsat_1_v5_gn_3_125500' => 'lsa', 'Lsat_1_v5_gn_3_125540' => 'lsa', 'Lsat_1_v5_gn_5_72701' => 'lsa', 'Lsat_1_v5_gn_8_91560' => 'lsa', 'Lsat_1_v5_gn_9_9640' => 'lsa', 'Manes.01G200600' => 'mes', 'Manes.01G200700' => 'mes', 'Manes.03G168900' => 'mes', 'Manes.03G169000' => 'mes', 'Manes.05G085801' => 'mes', 'Manes.05G086200' => 'mes', 'Manes.15G036700' => 'mes', 'Manes.15G036900' => 'mes', 'Mapoly0004s0172' => 'mpo', 'Mapoly0023s0001' => 'mpo', 'Mapoly0142s0012' => 'mpo', 'MBI01_g32854_MAGBIO' => 'mbi', 'MBI11_g24427_MAGBIO' => 'mbi', 'MBI11_g47319_MAGBIO' => 'mbi', 'MCO01G433' => 'mco', 'MD00G1187800' => 'mdo', 'MD04G1226500' => 'mdo', 'MD05G1203900' => 'mdo', 'MD10G1191100' => 'mdo', 'MD12G1243500' => 'mdo', 'MD13G1207000' => 'mdo', 'MD13G1207100' => 'mdo', 'MD16G1208600' => 'mdo', 'Medtr1g050352' => 'mtr', 'Medtr1g070385' => 'mtr', 'Medtr1g070450' => 'mtr', 'Medtr1g075200' => 'mtr', 'Medtr1g075250' => 'mtr', 'Medtr1g075260' => 'mtr', 'Medtr1g475250' => 'mtr', 'Medtr4g075450' => 'mtr', 'Medtr7g096300' => 'mtr', 'Medtr8g105110' => 'mtr', 'MELO3C006470.2' => 'cme', 'MELO3C006471.2' => 'cme', 'MELO3C020772.2' => 'cme', 'MELO3C026780.2' => 'cme', 'MELO3C026781.2' => 'cme', 'Migut.D00390' => 'egut', 'Migut.G00435' => 'egut', 'Migut.G00436' => 'egut', 'Migut.G00718' => 'egut', 'MSTRG.21891' => 'ama', 'MSTRG.26910' => 'ama', 'MSTRG.4099' => 'ama', 'MSTRG.9925' => 'ama', 'Nitab4.5_0000165g0010' => 'nta', 'Nitab4.5_0000209g0180' => 'nta', 'Nitab4.5_0000244g0440' => 'nta', 'Nitab4.5_0000525g0220' => 'nta', 'Nitab4.5_0001597g0020' => 'nta', 'Nitab4.5_0001878g0040' => 'nta', 'Nitab4.5_0001878g0060' => 'nta', 'Nitab4.5_0002838g0100' => 'nta', 'Nitab4.5_0002838g0120' => 'nta', 'Nitab4.5_0004798g0030' => 'nta', 'Nitab4.5_0005420g0010' => 'nta', 'Nitab4.5_0005507g0010' => 'nta', 'Nitab4.5_0005574g0020' => 'nta', 'Nitab4.5_0005838g0010' => 'nta', 'Nitab4.5_0010580g0020' => 'nta', 'Nn1g02599' => 'nnu', 'Nn1g02608' => 'nnu', 'Nn3g17742' => 'nnu', 'Nn3g19534' => 'nnu', 'Nn3g19535' => 'nnu', 'Oeu008790.1' => 'oeu', 'Oeu008792.1' => 'oeu', 'Oeu032590.1' => 'oeu', 'Oeu035349.1' => 'oeu', 'Oeu049791.1' => 'oeu', 'Os01g0774500' => 'osa', 'Os03g0628800' => 'osa', 'Os03g0798600' => 'osa', 'Os05g0508800' => 'osa', 'Peaxi162Scf00036g02018' => 'pax', 'Peaxi162Scf00578g00032' => 'pax', 'Peaxi162Scf00578g00317' => 'pax', 'Peaxi162Scf00785g00114' => 'pax', 'Peaxi162Scf00813g00119' => 'pax', 'Peaxi162Scf00906g00227' => 'pax', 'PGR004G0875' => 'pgr', 'PGR004G2424' => 'pgr', 'PGR031G1239' => 'pgr', 'PGR031G2474' => 'pgr', 'PGR044G0423' => 'pgr', 'PGSC0003DMG400001128' => 'stu', 'PGSC0003DMG400007336' => 'stu', 'PGSC0003DMG400016318' => 'stu', 'PGSC0003DMG400016319' => 'stu', 'PGSC0003DMG400018074' => 'stu', 'Phvul.001G157700' => 'pvu', 'Phvul.002G148550' => 'pvu', 'Phvul.002G320200' => 'pvu', 'Phvul.003G089200' => 'pvu', 'Phvul.007G126000' => 'pvu', 'Phvul.007G126100' => 'pvu', 'Phvul.007G178000' => 'pvu', 'Phvul.007G178200' => 'pvu', 'Potri.002G043000' => 'ptr', 'Potri.002G043200' => 'ptr', 'Potri.003G123750' => 'ptr', 'Potri.005G055401' => 'ptr', 'Potri.005G219700' => 'ptr', 'Potri.005G220000' => 'ptr', 'Potri.008G161901' => 'ptr', 'Potri.008G162000' => 'ptr', 'Potri.008G162400' => 'ptr', 'Potri.010G076900' => 'ptr', 'Pp3c12_9180' => 'ppa', 'Pp3c13_19770' => 'ppa', 'Pp3c14_22950' => 'ppa', 'Pp3c16_12160' => 'ppa', 'Pp3c27_7820' => 'ppa', 'Pp3c2_3490' => 'ppa', 'Pp3c3_23700' => 'ppa', 'Pp3c3_36520' => 'ppa', 'Pp3c4_15250' => 'ppa', 'PRCOL_00007002' => 'pco', 'Prupe.1G030600' => 'ppe', 'Prupe.1G030700' => 'ppe', 'Prupe.6G345200' => 'ppe', 'Prupe.8G230300' => 'ppe', 'Prupe.8G230500' => 'ppe', 'Psat3g059600' => 'psa', 'Psat5g200920' => 'psa', 'Psat6g056440' => 'psa', 'Psat6g057360' => 'psa', 'Psat6g134120' => 'psa', 'Psat6g134160' => 'psa', 'Psat7g008640' => 'psa', 'Psat7g185240' => 'psa', 'PSO017G1330' => 'pso', 'PSO063G6097' => 'pso', 'PSO170G0835' => 'pso', 'PSO170G2499' => 'pso', 'PSO210G5058' => 'pso', 'PSO210G6154' => 'pso', 'PSO585G0031' => 'pso', 'PSO832G0264' => 'pso', 'PSO832G4288' => 'pso', 'QL03p027355' => 'qlo', 'QL03p027430' => 'qlo', 'QL04p081380' => 'qlo', 'QL06p015642' => 'qlo', 'QL06p015650' => 'qlo', 'QL06p015686' => 'qlo', 'QL12p042927' => 'qlo', 'QL93p1863_0035' => 'qlo', 'RcHm_v2.0_Chr3g0450581' => 'rch', 'RcHm_v2.0_Chr4g0390371' => 'rch', 'RcHm_v2.0_Chr4g0390381' => 'rch', 'RcHm_v2.0_Chr4g0390491' => 'rch', 'RcHm_v2.0_Chr4g0390501' => 'rch', 'RcHm_v2.0_Chr6g0289231' => 'rch', 'Rhsim04G0190400' => 'rsi', 'Rhsim04G0190500' => 'rsi', 'Rhsim04G0190600' => 'rsi', 'Rhsim13G0031400' => 'rsi', 'Rhsim13G0165600' => 'rsi', 'RhsimUnG0114600' => 'rsi', 'RhsimUnG0114700' => 'rsi', 'Sabra02G0034800' => 'sbr', 'Sabra02G0035100' => 'sbr', 'Sabra05G0168600' => 'sbr', 'Sabra05G0168800' => 'sbr', 'Sabra08G0123700' => 'sbr', 'Sabra10G0031900' => 'sbr', 'Sabra13G0039000' => 'sbr', 'SalBow2G0782' => 'sbo', 'SalBow2G1403' => 'sbo', 'SalBow4G0074' => 'sbo', 'SalBow4G2635' => 'sbo', 'SalBow5G3010' => 'sbo', 'Sc05g0000870' => 'sci', 'Sc05g0000890' => 'sci', 'Sc13g0005000' => 'sci', 'Sc13g0005030' => 'sci', 'Sc19g0003790' => 'sci', 'Sc19g0003800' => 'sci', 'Sed0003467' => 'sed', 'Sed0009355' => 'sed', 'Sed0009894' => 'sed', 'Sed0011972' => 'sed', 'Sed0021483' => 'sed', 'Sed0021750' => 'sed', 'Sed0026279' => 'sed', 'SEGI_05312' => 'sgi', 'SEGI_10112' => 'sgi', 'SEGI_15835' => 'sgi', 'SEGI_30386' => 'sgi', 'SEGI_34122' => 'sgi', 'SEGI_35063' => 'sgi', 'SGA_v2.0_scaffold101G29794' => 'sas', 'SGA_v2.0_scaffold1G00573' => 'sas', 'SGA_v2.0_scaffold79G25637' => 'sas', 'SGA_v2.0_scaffold88G27283' => 'sas', 'SGA_v2.0_scaffold88G27285' => 'sas', 'SGA_v2.0_scaffold88G27331' => 'sas', 'SHI09937' => 'shi', 'SMO119G0302' => 'smo', 'SMO137G0231' => 'smo', 'SMO367G1151' => 'smo', 'Solyc02g082000.3' => 'sly', 'Solyc06g031670.3' => 'sly', 'Solyc06g053810.3' => 'sly', 'Solyc07g025457.1' => 'sly', 'Solyc08g059740.1' => 'sly', 'Solyc08g059750.3' => 'sly', 'Solyc09g083370.3' => 'sly', 'Solyc12g038950.3' => 'sly', 'Sopen02g026630' => 'spe', 'Sopen06g018930' => 'spe', 'Sopen06g018940' => 'spe', 'Sopen08g009460' => 'spe', 'Sopen09g032290' => 'spe', 'Sp1g03080' => 'spa', 'Sp1g03090' => 'spa', 'Sp1g05480' => 'spa', 'Sp2g07860' => 'spa', 'Sp2g08430' => 'spa', 'Sp2g08440' => 'spa', 'Sp2g26200' => 'spa', 'Sp4g13170' => 'spa', 'Sp6g33840' => 'spa', 'SpUn1204_0010' => 'spa', 'TAR365G0908' => 'tar', 'TAR381G1270' => 'tar', 'TAR381G1651' => 'tar', 'TAR625G1131' => 'tar', 'TAR633G0962' => 'tar', 'TAR633G1729' => 'tar', 'TAR633G1864' => 'tar', 'TAR636G0221' => 'tar', 'TAR636G0314' => 'tar', 'TAR636G3202' => 'tar', 'THA.LOC104800805' => 'tha', 'THA.LOC104801096' => 'tha', 'THA.LOC104801555' => 'tha', 'THA.LOC104808491' => 'tha', 'THA.LOC104808595' => 'tha', 'THA.LOC104815985' => 'tha', 'THA.LOC104822250' => 'tha', 'THA.LOC104826071' => 'tha', 'Thecc.01G265200' => 'tca', 'Thecc.01G265300' => 'tca', 'Thecc.01G265700' => 'tca', 'Thecc.03G109100' => 'tca', 'Thecc.04G245900' => 'tca', 'Thecc.04G246000' => 'tca', 'Thhalv10003334m.g' => 'esa', 'Thhalv10005508m.g' => 'esa', 'Thhalv10005643m.g' => 'esa', 'Thhalv10007316m.g' => 'esa', 'Thhalv10009006m.g' => 'esa', 'Thhalv10009309m.g' => 'esa', 'Thhalv10014917m.g' => 'esa', 'Thhalv10014919m.g' => 'esa', 'Thhalv10015393m.g' => 'esa', 'Thhalv10016515m.g' => 'esa', 'Thhalv10029242m.g' => 'esa', 'TPR.G16654' => 'tpr', 'TPR.G20589' => 'tpr', 'TPR.G23029' => 'tpr', 'TPR.G27731' => 'tpr', 'TPR.G28889' => 'tpr', 'TPR.G28899' => 'tpr', 'TPR.G30846' => 'tpr', 'TPR.G5452' => 'tpr', 'TPR.G5713' => 'tpr', 'TPR.G9046' => 'tpr', 'TPR.G9061' => 'tpr', 'TWI09G1075' => 'twi', 'TWI12G0806' => 'twi', 'TWI18G0108' => 'twi', 'TWI53G1361' => 'twi', 'TWI73G0185' => 'twi', 'TWI73G0427' => 'twi', 'unitig_37.g12001' => 'ugi', 'unitig_747.g21660' => 'ugi', 'unitig_748.g7232' => 'ugi', 'unitig_748.g7315' => 'ugi', 'unitig_85.g27262' => 'ugi', 'unitig_92.g28220' => 'ugi', 'vmacro02632' => 'vma', 'vmacro08410' => 'vma', 'vmacro08411' => 'vma', 'vmacro15407' => 'vma', 'VMungo0251G3619' => 'vmu', 'VMungo0720G1204' => 'vmu', 'VMungo0720G1918' => 'vmu', 'VMungo0720G2387' => 'vmu', 'VMungo0720G2961' => 'vmu', 'VMungo1215G2154' => 'vmu', 'VMungo1383G2411' => 'vmu', 'Zm00001eb051130' => 'zma', 'Zm00001eb116830' => 'zma', 'Zm00001eb116850' => 'zma', 'Zm00001eb151740' => 'zma', 'Zm00001eb292360' => 'zma', 'Zm00001eb301640' => 'zma' ) $gf_id = 'HOM05D000856' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000856' ) $data_identifier = 'HOM05D000856' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 13, 'ath' => (int) 10, 'atr' => (int) 1, 'acertr' => (int) 8, 'cqu' => (int) 6, 'bca' => (int) 21, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 11, 'car' => (int) 9, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 8, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 5, 'fan' => (int) 16, 'fve' => (int) 6, 'gma' => (int) 11, 'ghi' => (int) 19, 'gra' => (int) 9, 'vvi' => (int) 7, 'han' => (int) 17, 'cav' => (int) 5, 'hma' => (int) 2, 'vpl' => (int) 2, 'sun' => (int) 7, 'lal' => (int) 9, 'lja' => (int) 5, 'lonja' => (int) 9, 'lsa' => (int) 5, 'mes' => (int) 8, 'mpo' => (int) 3, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 10, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 15, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 9, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 9, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 6, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 5, 'spa' => (int) 10, 'tar' => (int) 10, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 11, 'tpr' => (int) 11, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 4, 'vmu' => (int) 7, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb301640' $species_info = array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ) $local_species = 'sed' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000856', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p00010' => 'bna', 'A03p04160' => 'bna', 'A03p17160' => 'bna', 'A04p23370' => 'bna', 'A05p14860' => 'bna', 'A08p37020' => 'bna', 'A09p08050' => 'bna', 'A09p66800' => 'bna', 'A09p67940' => 'bna', 'A10p02680' => 'bna', 'A10p05320' => 'bna', 'Aa31LG1G20560' => 'aar', 'Aa31LG1G20610' => 'aar', 'Aa31LG1G7810' => 'aar', 'Aa31LG5G3590' => 'aar', 'Aa31LG5G6140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3819' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4683' => 'aag', 'Actinidia04480' => 'ach', 'Actinidia05466' => 'ach', 'Actinidia08445' => 'ach', 'Actinidia21170' => 'ach', 'Actinidia24812' => 'ach', 'Actinidia24951' => 'ach', 'Actinidia40088' => 'ach', 'Ah.02g111660' => 'amhyb', 'Ah.11g048900' => 'amhyb', 'Ah.11g049910' => 'amhyb', 'AL1G13870' => 'aly', 'AL1G13880' => 'aly', 'AL1G16760' => 'aly', 'AL390U10020' => 'aly', 'AL4G25520' => 'aly', 'AL6G19890' => 'aly', 'AL6G19900' => 'aly', 'AL6G19910' => 'aly', 'AL8G40100' => 'aly', 'Aqoxy2G03562' => 'aox', 'Aqoxy5G00316' => 'aox', 'Aqoxy5G00926' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1628KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1H403S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2FU6SJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.882I6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8YRY2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YN1SN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AF70II' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZA8L1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F916KL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHRD8H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KTZ8QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S22EMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8M29T' => 'arhy', 'AT1G04270' => 'ath', 'AT1G04280' => 'ath', 'AT1G06750' => 'ath', 'AT1G33850' => 'ath', 'AT2G30630' => 'ath', 'AT5G09490' => 'ath', 'AT5G09500' => 'ath', 'AT5G09510' => 'ath', 'AT5G43640' => 'ath', 'AT5G63070' => 'ath', 'ATR0605G315' => 'atr', 'Atru.chr11.175' => 'acertr', 'Atru.chr11.653' => 'acertr', 'Atru.chr3.1616' => 'acertr', 'Atru.chr4.2230' => 'acertr', 'Atru.chr4.2232' => 'acertr', 'Atru.chr5.1598' => 'acertr', 'Atru.chr5.1600' => 'acertr', 'Atru.chr5.2188' => 'acertr', 'AUR62008326' => 'cqu', 'AUR62011922' => 'cqu', 'AUR62011924' => 'cqu', 'AUR62021771' => 'cqu', 'AUR62032237' => 'cqu', 'AUR62032240' => 'cqu', 'BcaB01g05572' => 'bca', 'BcaB02g10337' => 'bca', 'BcaB04g19944' => 'bca', 'BcaB05g21548' => 'bca', 'BcaB05g21549' => 'bca', 'BcaB05g23227' => 'bca', 'BcaB06g26256' => 'bca', 'BcaB06g26257' => 'bca', 'BcaB06g28379' => 'bca', 'BcaC02g11159' => 'bca', 'BcaC03g13258' => 'bca', 'BcaC03g13259' => 'bca', 'BcaC05g24456' => 'bca', 'BcaC05g24457' => 'bca', 'BcaC07g36922' => 'bca', 'BcaC07g36923' => 'bca', 'BcaC07g42050' => 'bca', 'BcaC07g42176' => 'bca', 'BcaC07g42195' => 'bca', 'BcaC07g42196' => 'bca', 'BcaNung06674' => 'bca', 'BolC2t06351H' => 'bol', 'BolC2t06352H' => 'bol', 'BolC3t12993H' => 'bol', 'BolC4t23525H' => 'bol', 'BolC4t27475H' => 'bol', 'BolC5t29025H' => 'bol', 'BolC5t29026H' => 'bol', 'BolC8t46898H' => 'bol', 'BolC8t46899H' => 'bol', 'BolC8t52630H' => 'bol', 'BolC8t52765H' => 'bol', 'BolC9t53824H' => 'bol', 'BraA03t09760Z' => 'bra', 'BraA03t10990Z' => 'bra', 'BraA05t20413Z' => 'bra', 'BraA08t35602Z' => 'bra', 'BraA09t36458Z' => 'bra', 'BraA09t42018Z' => 'bra', 'BraA09t42129Z' => 'bra', 'BraA10t42536Z' => 'bra', 'BraA10t42537Z' => 'bra', 'C01p10690' => 'bna', 'C02p03890' => 'bna', 'C02p03900' => 'bna', 'C03p04620' => 'bna', 'C04p19870' => 'bna', 'C04p59670' => 'bna', 'C05p02460' => 'bna', 'C05p02470' => 'bna', 'C08p00980' => 'bna', 'C08p00990' => 'bna', 'C08p51030' => 'bna', 'C08p52360' => 'bna', 'C09p09120' => 'bna', 'CAN.G19.15' => 'can', 'CAN.G251.10' => 'can', 'CAN.G251.9' => 'can', 'CAN.G398.24' => 'can', 'CAN.G410.32' => 'can', 'CAN.G881.2' => 'can', 'CANSAT01G3025' => 'cansat', 'CANSAT78G1211' => 'cansat', 'CANSAT78G1218' => 'cansat', 'CANSAT78G1521' => 'cansat', 'CANSAT78G1670' => 'cansat', 'CARHR003600' => 'chi', 'CARHR003610' => 'chi', 'CARHR006290' => 'chi', 'CARHR006430' => 'chi', 'CARHR124110' => 'chi', 'CARHR203870' => 'chi', 'CARHR203880' => 'chi', 'CARHR203890' => 'chi', 'CARHR276880' => 'chi', 'Carub.0001s0346' => 'cru', 'Carub.0001s0347' => 'cru', 'Carub.0001s0607' => 'cru', 'Carub.0003s2768' => 'cru', 'Carub.0003s2769' => 'cru', 'Carub.0004s1178' => 'cru', 'Carub.0006s0806' => 'cru', 'Carub.0006s0807' => 'cru', 'Carub.0006s0808' => 'cru', 'Carub.0008s0501' => 'cru', 'Carub.0008s2379' => 'cru', 'Ca_08655_v3' => 'car', 'Ca_08922_v3' => 'car', 'Ca_08923_v3' => 'car', 'Ca_09119_v3' => 'car', 'Ca_09703_v3' => 'car', 'Ca_09705_v3' => 'car', 'Ca_09835_v3' => 'car', 'Ca_26403_v3' => 'car', 'Ca_30719_v3' => 'car', 'CBR_g17958' => 'cbr', 'CBR_g40516' => 'cbr', 'Cc00_g05350' => 'ccan', 'Cc01_g18690' => 'ccan', 'Cc03_g04830' => 'ccan', 'Cc03_g04850' => 'ccan', 'CDE02G4469' => 'cde', 'CDE06G0883' => 'cde', 'CDE06G1295' => 'cde', 'CDE06G1390' => 'cde', 'CDE07G0584' => 'cde', 'CDE07G1084' => 'cde', 'CDE08G1259' => 'cde', 'Cfa002341' => 'cfa', 'Cfa024337' => 'cfa', 'Ciclev10004749m.g' => 'ccl', 'Ciclev10006127m.g' => 'ccl', 'Ciclev10019720m.g' => 'ccl', 'Ciclev10022652m.g' => 'ccl', 'CiPaw.01G190400' => 'cil', 'CiPaw.01G190500' => 'cil', 'CiPaw.02G116400' => 'cil', 'CiPaw.02G116500' => 'cil', 'CiPaw.04G183000' => 'cil', 'CiPaw.04G183300' => 'cil', 'ClCG05G004610' => 'cla', 'ClCG05G004620' => 'cla', 'ClCG06G006730' => 'cla', 'ClCG06G006740' => 'cla', 'ClCG11G003690' => 'cla', 'COL.COLO4_08276' => 'col', 'COL.COLO4_08277' => 'col', 'COL.COLO4_15787' => 'col', 'COL.COLO4_15789' => 'col', 'Cpa.g.c44815' => 'cpa', 'Cpa.g.sc52.144' => 'cpa', 'Cpa.g.sc58.46' => 'cpa', 'Cpa.g.sc58.47' => 'cpa', 'Cre08.g360900' => 'cre', 'CsaV3_2G013030' => 'csa', 'CsaV3_2G013050' => 'csa', 'CsaV3_2G015620' => 'csa', 'CsaV3_3G012590' => 'csa', 'CsaV3_3G012600' => 'csa', 'CSS0001641' => 'camsi', 'CSS0008310' => 'camsi', 'CSS0013011' => 'camsi', 'CSS0017147' => 'camsi', 'CSS0022970' => 'camsi', 'CSS0025655' => 'camsi', 'CSS0028665' => 'camsi', 'CSS0029117' => 'camsi', 'CSS0032024' => 'camsi', 'CSS0039681' => 'camsi', 'CSS0046516' => 'camsi', 'CSS0050307' => 'camsi', 'DCAR_005871' => 'dca', 'DCAR_007342' => 'dca', 'DCAR_024228' => 'dca', 'DCAR_027277' => 'dca', 'DCAR_030718' => 'dca', 'Dinv20287' => 'din', 'Dinv22461' => 'din', 'Dinv22464' => 'din', 'Dinv29912' => 'din', 'Dinv29913' => 'din', 'Dinv34580' => 'din', 'Dinv34582' => 'din', 'Dinv44632' => 'din', 'Duzib052G0266' => 'dzi', 'Duzib133G0907' => 'dzi', 'Duzib133G1034' => 'dzi', 'Duzib138G0207' => 'dzi', 'Duzib138G0491' => 'dzi', 'Duzib151G0812' => 'dzi', 'Duzib151G1166' => 'dzi', 'Duzib168G0192' => 'dzi', 'Duzib211G0077' => 'dzi', 'Duzib212G0429' => 'dzi', 'Duzib212G0472' => 'dzi', 'ECA233G2617' => 'eca', 'ECA236G4188' => 'eca', 'ECA240G0936' => 'eca', 'ECA240G1129' => 'eca', 'ECA247G0623' => 'eca', 'EL10Ac5g10451' => 'bvu', 'EL10Ac5g10453' => 'bvu', 'EL10Ac5g10894' => 'bvu', 'Eucgr.H00192' => 'egr', 'Eucgr.H00193' => 'egr', 'Eucgr.H00194' => 'egr', 'Eucgr.J01562' => 'egr', 'Eucgr.K03301' => 'egr', 'FAN02G0632' => 'fan', 'FAN05G5378' => 'fan', 'FAN09G3247' => 'fan', 'FAN12G0435' => 'fan', 'FAN12G2426' => 'fan', 'FAN14G1707' => 'fan', 'FAN14G4725' => 'fan', 'FAN15G2071' => 'fan', 'FAN17G3065' => 'fan', 'FAN19G1376' => 'fan', 'FAN20G0354' => 'fan', 'FAN20G2429' => 'fan', 'FAN20G2658' => 'fan', 'FAN24G2343' => 'fan', 'FAN27G2362' => 'fan', 'FAN28G1765' => 'fan', 'FvH4_1g16020' => 'fve', 'FvH4_2g04890' => 'fve', 'FvH4_2g22270' => 'fve', 'FvH4_4g02630' => 'fve', 'FvH4_4g02640' => 'fve', 'FvH4_6g02650' => 'fve', 'Glyma.02G140600' => 'gma', 'Glyma.03G159900' => 'gma', 'Glyma.05G234800' => 'gma', 'Glyma.07G269600' => 'gma', 'Glyma.08G042300' => 'gma', 'Glyma.10G033500' => 'gma', 'Glyma.10G185200' => 'gma', 'Glyma.17G004300' => 'gma', 'Glyma.19G161900' => 'gma', 'Glyma.20G205100' => 'gma', 'Glyma.20G205200' => 'gma', 'Gohir.A01G139101' => 'ghi', 'Gohir.A02G035600' => 'ghi', 'Gohir.A02G117901' => 'ghi', 'Gohir.A07G210100' => 'ghi', 'Gohir.A07G210200' => 'ghi', 'Gohir.A08G061100' => 'ghi', 'Gohir.A09G223000' => 'ghi', 'Gohir.A09G223100' => 'ghi', 'Gohir.A10G113900' => 'ghi', 'Gohir.A10G114000' => 'ghi', 'Gohir.D02G042300' => 'ghi', 'Gohir.D07G216100' => 'ghi', 'Gohir.D07G216200' => 'ghi', 'Gohir.D08G070400' => 'ghi', 'Gohir.D09G225000' => 'ghi', 'Gohir.D09G225100' => 'ghi', 'Gohir.D10G152300' => 'ghi', 'Gohir.D10G153200' => 'ghi', 'Gohir.D11G133701' => 'ghi', 'Gorai.004G074100' => 'gra', 'Gorai.005G046800' => 'gra', 'Gorai.006G246500' => 'gra', 'Gorai.006G246600' => 'gra', 'Gorai.007G142900' => 'gra', 'Gorai.011G171000' => 'gra', 'Gorai.011G171100' => 'gra', 'Gorai.013G104300' => 'gra', 'Gorai.013G104400' => 'gra', 'GSVIVG01000754001' => 'vvi', 'GSVIVG01000756001' => 'vvi', 'GSVIVG01010903001' => 'vvi', 'GSVIVG01017623001' => 'vvi', 'GSVIVG01018113001' => 'vvi', 'GSVIVG01018116001' => 'vvi', 'GSVIVG01018118001' => 'vvi', 'HanXRQChr03g0076211' => 'han', 'HanXRQChr03g0092431' => 'han', 'HanXRQChr03g0092441' => 'han', 'HanXRQChr03g0092591' => 'han', 'HanXRQChr03g0092671' => 'han', 'HanXRQChr03g0092681' => 'han', 'HanXRQChr03g0092691' => 'han', 'HanXRQChr03g0092701' => 'han', 'HanXRQChr03g0092721' => 'han', 'HanXRQChr03g0092731' => 'han', 'HanXRQChr04g0113681' => 'han', 'HanXRQChr10g0281371' => 'han', 'HanXRQChr11g0337141' => 'han', 'HanXRQChr13g0424521' => 'han', 'HanXRQChr13g0424531' => 'han', 'HanXRQChr13g0424541' => 'han', 'HanXRQChr16g0498221' => 'han', 'Haze_04377' => 'cav', 'Haze_11298' => 'cav', 'Haze_24547' => 'cav', 'Haze_24550' => 'cav', 'Haze_26587' => 'cav', 'Hma1.2p1_0650F.1_g195410' => 'hma', 'Hma1.2p1_0893F.1_g233470' => 'hma', 'HPP92_006508' => 'vpl', 'HPP92_024780' => 'vpl', 'Hund02688' => 'sun', 'Hund09380' => 'sun', 'Hund09381' => 'sun', 'Hund09832' => 'sun', 'Hund09833' => 'sun', 'Hund11351' => 'sun', 'Hund11513' => 'sun', 'Lalb_Chr06g0162591' => 'lal', 'Lalb_Chr06g0162601' => 'lal', 'Lalb_Chr06g0169321' => 'lal', 'Lalb_Chr09g0330951' => 'lal', 'Lalb_Chr16g0387631' => 'lal', 'Lalb_Chr21g0306241' => 'lal', 'Lalb_Chr25g0290051' => 'lal', 'Lalb_Chr25g0290061' => 'lal', 'Lalb_Chr25g0290071' => 'lal', 'Lj1g0003876' => 'lja', 'Lj1P1207T36' => 'lonja', 'Lj2C1156G12' => 'lonja', 'Lj3A793G39' => 'lonja', 'Lj3C580G2' => 'lonja', 'Lj3C780G2' => 'lonja', 'Lj3C780T4' => 'lonja', 'Lj3C793G9' => 'lonja', 'Lj4g0012960' => 'lja', 'Lj5g0021252' => 'lja', 'Lj5g0021484' => 'lja', 'Lj5g0024528' => 'lja', 'Lj6A399T12' => 'lonja', 'Lj6A656G65' => 'lonja', 'Lsat_1_v5_gn_3_125500' => 'lsa', 'Lsat_1_v5_gn_3_125540' => 'lsa', 'Lsat_1_v5_gn_5_72701' => 'lsa', 'Lsat_1_v5_gn_8_91560' => 'lsa', 'Lsat_1_v5_gn_9_9640' => 'lsa', 'Manes.01G200600' => 'mes', 'Manes.01G200700' => 'mes', 'Manes.03G168900' => 'mes', 'Manes.03G169000' => 'mes', 'Manes.05G085801' => 'mes', 'Manes.05G086200' => 'mes', 'Manes.15G036700' => 'mes', 'Manes.15G036900' => 'mes', 'Mapoly0004s0172' => 'mpo', 'Mapoly0023s0001' => 'mpo', 'Mapoly0142s0012' => 'mpo', 'MBI01_g32854_MAGBIO' => 'mbi', 'MBI11_g24427_MAGBIO' => 'mbi', 'MBI11_g47319_MAGBIO' => 'mbi', 'MCO01G433' => 'mco', 'MD00G1187800' => 'mdo', 'MD04G1226500' => 'mdo', 'MD05G1203900' => 'mdo', 'MD10G1191100' => 'mdo', 'MD12G1243500' => 'mdo', 'MD13G1207000' => 'mdo', 'MD13G1207100' => 'mdo', 'MD16G1208600' => 'mdo', 'Medtr1g050352' => 'mtr', 'Medtr1g070385' => 'mtr', 'Medtr1g070450' => 'mtr', 'Medtr1g075200' => 'mtr', 'Medtr1g075250' => 'mtr', 'Medtr1g075260' => 'mtr', 'Medtr1g475250' => 'mtr', 'Medtr4g075450' => 'mtr', 'Medtr7g096300' => 'mtr', 'Medtr8g105110' => 'mtr', 'MELO3C006470.2' => 'cme', 'MELO3C006471.2' => 'cme', 'MELO3C020772.2' => 'cme', 'MELO3C026780.2' => 'cme', 'MELO3C026781.2' => 'cme', 'Migut.D00390' => 'egut', 'Migut.G00435' => 'egut', 'Migut.G00436' => 'egut', 'Migut.G00718' => 'egut', 'MSTRG.21891' => 'ama', 'MSTRG.26910' => 'ama', 'MSTRG.4099' => 'ama', 'MSTRG.9925' => 'ama', 'Nitab4.5_0000165g0010' => 'nta', 'Nitab4.5_0000209g0180' => 'nta', 'Nitab4.5_0000244g0440' => 'nta', 'Nitab4.5_0000525g0220' => 'nta', 'Nitab4.5_0001597g0020' => 'nta', 'Nitab4.5_0001878g0040' => 'nta', 'Nitab4.5_0001878g0060' => 'nta', 'Nitab4.5_0002838g0100' => 'nta', 'Nitab4.5_0002838g0120' => 'nta', 'Nitab4.5_0004798g0030' => 'nta', 'Nitab4.5_0005420g0010' => 'nta', 'Nitab4.5_0005507g0010' => 'nta', 'Nitab4.5_0005574g0020' => 'nta', 'Nitab4.5_0005838g0010' => 'nta', 'Nitab4.5_0010580g0020' => 'nta', 'Nn1g02599' => 'nnu', 'Nn1g02608' => 'nnu', 'Nn3g17742' => 'nnu', 'Nn3g19534' => 'nnu', 'Nn3g19535' => 'nnu', 'Oeu008790.1' => 'oeu', 'Oeu008792.1' => 'oeu', 'Oeu032590.1' => 'oeu', 'Oeu035349.1' => 'oeu', 'Oeu049791.1' => 'oeu', 'Os01g0774500' => 'osa', 'Os03g0628800' => 'osa', 'Os03g0798600' => 'osa', 'Os05g0508800' => 'osa', 'Peaxi162Scf00036g02018' => 'pax', 'Peaxi162Scf00578g00032' => 'pax', 'Peaxi162Scf00578g00317' => 'pax', 'Peaxi162Scf00785g00114' => 'pax', 'Peaxi162Scf00813g00119' => 'pax', 'Peaxi162Scf00906g00227' => 'pax', 'PGR004G0875' => 'pgr', 'PGR004G2424' => 'pgr', 'PGR031G1239' => 'pgr', 'PGR031G2474' => 'pgr', 'PGR044G0423' => 'pgr', 'PGSC0003DMG400001128' => 'stu', 'PGSC0003DMG400007336' => 'stu', 'PGSC0003DMG400016318' => 'stu', 'PGSC0003DMG400016319' => 'stu', 'PGSC0003DMG400018074' => 'stu', 'Phvul.001G157700' => 'pvu', 'Phvul.002G148550' => 'pvu', 'Phvul.002G320200' => 'pvu', 'Phvul.003G089200' => 'pvu', 'Phvul.007G126000' => 'pvu', 'Phvul.007G126100' => 'pvu', 'Phvul.007G178000' => 'pvu', 'Phvul.007G178200' => 'pvu', 'Potri.002G043000' => 'ptr', 'Potri.002G043200' => 'ptr', 'Potri.003G123750' => 'ptr', 'Potri.005G055401' => 'ptr', 'Potri.005G219700' => 'ptr', 'Potri.005G220000' => 'ptr', 'Potri.008G161901' => 'ptr', 'Potri.008G162000' => 'ptr', 'Potri.008G162400' => 'ptr', 'Potri.010G076900' => 'ptr', 'Pp3c12_9180' => 'ppa', 'Pp3c13_19770' => 'ppa', 'Pp3c14_22950' => 'ppa', 'Pp3c16_12160' => 'ppa', 'Pp3c27_7820' => 'ppa', 'Pp3c2_3490' => 'ppa', 'Pp3c3_23700' => 'ppa', 'Pp3c3_36520' => 'ppa', 'Pp3c4_15250' => 'ppa', 'PRCOL_00007002' => 'pco', 'Prupe.1G030600' => 'ppe', 'Prupe.1G030700' => 'ppe', 'Prupe.6G345200' => 'ppe', 'Prupe.8G230300' => 'ppe', 'Prupe.8G230500' => 'ppe', 'Psat3g059600' => 'psa', 'Psat5g200920' => 'psa', 'Psat6g056440' => 'psa', 'Psat6g057360' => 'psa', 'Psat6g134120' => 'psa', 'Psat6g134160' => 'psa', 'Psat7g008640' => 'psa', 'Psat7g185240' => 'psa', 'PSO017G1330' => 'pso', 'PSO063G6097' => 'pso', 'PSO170G0835' => 'pso', 'PSO170G2499' => 'pso', 'PSO210G5058' => 'pso', 'PSO210G6154' => 'pso', 'PSO585G0031' => 'pso', 'PSO832G0264' => 'pso', 'PSO832G4288' => 'pso', 'QL03p027355' => 'qlo', 'QL03p027430' => 'qlo', 'QL04p081380' => 'qlo', 'QL06p015642' => 'qlo', 'QL06p015650' => 'qlo', 'QL06p015686' => 'qlo', 'QL12p042927' => 'qlo', 'QL93p1863_0035' => 'qlo', 'RcHm_v2.0_Chr3g0450581' => 'rch', 'RcHm_v2.0_Chr4g0390371' => 'rch', 'RcHm_v2.0_Chr4g0390381' => 'rch', 'RcHm_v2.0_Chr4g0390491' => 'rch', 'RcHm_v2.0_Chr4g0390501' => 'rch', 'RcHm_v2.0_Chr6g0289231' => 'rch', 'Rhsim04G0190400' => 'rsi', 'Rhsim04G0190500' => 'rsi', 'Rhsim04G0190600' => 'rsi', 'Rhsim13G0031400' => 'rsi', 'Rhsim13G0165600' => 'rsi', 'RhsimUnG0114600' => 'rsi', 'RhsimUnG0114700' => 'rsi', 'Sabra02G0034800' => 'sbr', 'Sabra02G0035100' => 'sbr', 'Sabra05G0168600' => 'sbr', 'Sabra05G0168800' => 'sbr', 'Sabra08G0123700' => 'sbr', 'Sabra10G0031900' => 'sbr', 'Sabra13G0039000' => 'sbr', 'SalBow2G0782' => 'sbo', 'SalBow2G1403' => 'sbo', 'SalBow4G0074' => 'sbo', 'SalBow4G2635' => 'sbo', 'SalBow5G3010' => 'sbo', 'Sc05g0000870' => 'sci', 'Sc05g0000890' => 'sci', 'Sc13g0005000' => 'sci', 'Sc13g0005030' => 'sci', 'Sc19g0003790' => 'sci', 'Sc19g0003800' => 'sci', 'Sed0003467' => 'sed', 'Sed0009355' => 'sed', 'Sed0009894' => 'sed', 'Sed0011972' => 'sed', 'Sed0021483' => 'sed', 'Sed0021750' => 'sed', 'Sed0026279' => 'sed', 'SEGI_05312' => 'sgi', 'SEGI_10112' => 'sgi', 'SEGI_15835' => 'sgi', 'SEGI_30386' => 'sgi', 'SEGI_34122' => 'sgi', 'SEGI_35063' => 'sgi', 'SGA_v2.0_scaffold101G29794' => 'sas', 'SGA_v2.0_scaffold1G00573' => 'sas', 'SGA_v2.0_scaffold79G25637' => 'sas', 'SGA_v2.0_scaffold88G27283' => 'sas', 'SGA_v2.0_scaffold88G27285' => 'sas', 'SGA_v2.0_scaffold88G27331' => 'sas', 'SHI09937' => 'shi', 'SMO119G0302' => 'smo', 'SMO137G0231' => 'smo', 'SMO367G1151' => 'smo', 'Solyc02g082000.3' => 'sly', 'Solyc06g031670.3' => 'sly', 'Solyc06g053810.3' => 'sly', 'Solyc07g025457.1' => 'sly', 'Solyc08g059740.1' => 'sly', 'Solyc08g059750.3' => 'sly', 'Solyc09g083370.3' => 'sly', 'Solyc12g038950.3' => 'sly', 'Sopen02g026630' => 'spe', 'Sopen06g018930' => 'spe', 'Sopen06g018940' => 'spe', 'Sopen08g009460' => 'spe', 'Sopen09g032290' => 'spe', 'Sp1g03080' => 'spa', 'Sp1g03090' => 'spa', 'Sp1g05480' => 'spa', 'Sp2g07860' => 'spa', 'Sp2g08430' => 'spa', 'Sp2g08440' => 'spa', 'Sp2g26200' => 'spa', 'Sp4g13170' => 'spa', 'Sp6g33840' => 'spa', 'SpUn1204_0010' => 'spa', 'TAR365G0908' => 'tar', 'TAR381G1270' => 'tar', 'TAR381G1651' => 'tar', 'TAR625G1131' => 'tar', 'TAR633G0962' => 'tar', 'TAR633G1729' => 'tar', 'TAR633G1864' => 'tar', 'TAR636G0221' => 'tar', 'TAR636G0314' => 'tar', 'TAR636G3202' => 'tar', 'THA.LOC104800805' => 'tha', 'THA.LOC104801096' => 'tha', 'THA.LOC104801555' => 'tha', 'THA.LOC104808491' => 'tha', 'THA.LOC104808595' => 'tha', 'THA.LOC104815985' => 'tha', 'THA.LOC104822250' => 'tha', 'THA.LOC104826071' => 'tha', 'Thecc.01G265200' => 'tca', 'Thecc.01G265300' => 'tca', 'Thecc.01G265700' => 'tca', 'Thecc.03G109100' => 'tca', 'Thecc.04G245900' => 'tca', 'Thecc.04G246000' => 'tca', 'Thhalv10003334m.g' => 'esa', 'Thhalv10005508m.g' => 'esa', 'Thhalv10005643m.g' => 'esa', 'Thhalv10007316m.g' => 'esa', 'Thhalv10009006m.g' => 'esa', 'Thhalv10009309m.g' => 'esa', 'Thhalv10014917m.g' => 'esa', 'Thhalv10014919m.g' => 'esa', 'Thhalv10015393m.g' => 'esa', 'Thhalv10016515m.g' => 'esa', 'Thhalv10029242m.g' => 'esa', 'TPR.G16654' => 'tpr', 'TPR.G20589' => 'tpr', 'TPR.G23029' => 'tpr', 'TPR.G27731' => 'tpr', 'TPR.G28889' => 'tpr', 'TPR.G28899' => 'tpr', 'TPR.G30846' => 'tpr', 'TPR.G5452' => 'tpr', 'TPR.G5713' => 'tpr', 'TPR.G9046' => 'tpr', 'TPR.G9061' => 'tpr', 'TWI09G1075' => 'twi', 'TWI12G0806' => 'twi', 'TWI18G0108' => 'twi', 'TWI53G1361' => 'twi', 'TWI73G0185' => 'twi', 'TWI73G0427' => 'twi', 'unitig_37.g12001' => 'ugi', 'unitig_747.g21660' => 'ugi', 'unitig_748.g7232' => 'ugi', 'unitig_748.g7315' => 'ugi', 'unitig_85.g27262' => 'ugi', 'unitig_92.g28220' => 'ugi', 'vmacro02632' => 'vma', 'vmacro08410' => 'vma', 'vmacro08411' => 'vma', 'vmacro15407' => 'vma', 'VMungo0251G3619' => 'vmu', 'VMungo0720G1204' => 'vmu', 'VMungo0720G1918' => 'vmu', 'VMungo0720G2387' => 'vmu', 'VMungo0720G2961' => 'vmu', 'VMungo1215G2154' => 'vmu', 'VMungo1383G2411' => 'vmu', 'Zm00001eb051130' => 'zma', 'Zm00001eb116830' => 'zma', 'Zm00001eb116850' => 'zma', 'Zm00001eb151740' => 'zma', 'Zm00001eb292360' => 'zma', 'Zm00001eb301640' => 'zma' ), 'gf_id' => 'HOM05D000856', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000856' ), 'data_identifier' => 'HOM05D000856', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000856', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p00010' => 'bna', 'A03p04160' => 'bna', 'A03p17160' => 'bna', 'A04p23370' => 'bna', 'A05p14860' => 'bna', 'A08p37020' => 'bna', 'A09p08050' => 'bna', 'A09p66800' => 'bna', 'A09p67940' => 'bna', 'A10p02680' => 'bna', 'A10p05320' => 'bna', 'Aa31LG1G20560' => 'aar', 'Aa31LG1G20610' => 'aar', 'Aa31LG1G7810' => 'aar', 'Aa31LG5G3590' => 'aar', 'Aa31LG5G6140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3819' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4683' => 'aag', 'Actinidia04480' => 'ach', 'Actinidia05466' => 'ach', 'Actinidia08445' => 'ach', 'Actinidia21170' => 'ach', 'Actinidia24812' => 'ach', 'Actinidia24951' => 'ach', 'Actinidia40088' => 'ach', 'Ah.02g111660' => 'amhyb', 'Ah.11g048900' => 'amhyb', 'Ah.11g049910' => 'amhyb', 'AL1G13870' => 'aly', 'AL1G13880' => 'aly', 'AL1G16760' => 'aly', 'AL390U10020' => 'aly', 'AL4G25520' => 'aly', 'AL6G19890' => 'aly', 'AL6G19900' => 'aly', 'AL6G19910' => 'aly', 'AL8G40100' => 'aly', 'Aqoxy2G03562' => 'aox', 'Aqoxy5G00316' => 'aox', 'Aqoxy5G00926' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1628KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1H403S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2FU6SJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.882I6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8YRY2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YN1SN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AF70II' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZA8L1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F916KL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHRD8H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KTZ8QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S22EMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8M29T' => 'arhy', 'AT1G04270' => 'ath', 'AT1G04280' => 'ath', 'AT1G06750' => 'ath', 'AT1G33850' => 'ath', 'AT2G30630' => 'ath', 'AT5G09490' => 'ath', 'AT5G09500' => 'ath', 'AT5G09510' => 'ath', 'AT5G43640' => 'ath', 'AT5G63070' => 'ath', 'ATR0605G315' => 'atr', 'Atru.chr11.175' => 'acertr', 'Atru.chr11.653' => 'acertr', 'Atru.chr3.1616' => 'acertr', 'Atru.chr4.2230' => 'acertr', 'Atru.chr4.2232' => 'acertr', 'Atru.chr5.1598' => 'acertr', 'Atru.chr5.1600' => 'acertr', 'Atru.chr5.2188' => 'acertr', 'AUR62008326' => 'cqu', 'AUR62011922' => 'cqu', 'AUR62011924' => 'cqu', 'AUR62021771' => 'cqu', 'AUR62032237' => 'cqu', 'AUR62032240' => 'cqu', 'BcaB01g05572' => 'bca', 'BcaB02g10337' => 'bca', 'BcaB04g19944' => 'bca', 'BcaB05g21548' => 'bca', 'BcaB05g21549' => 'bca', 'BcaB05g23227' => 'bca', 'BcaB06g26256' => 'bca', 'BcaB06g26257' => 'bca', 'BcaB06g28379' => 'bca', 'BcaC02g11159' => 'bca', 'BcaC03g13258' => 'bca', 'BcaC03g13259' => 'bca', 'BcaC05g24456' => 'bca', 'BcaC05g24457' => 'bca', 'BcaC07g36922' => 'bca', 'BcaC07g36923' => 'bca', 'BcaC07g42050' => 'bca', 'BcaC07g42176' => 'bca', 'BcaC07g42195' => 'bca', 'BcaC07g42196' => 'bca', 'BcaNung06674' => 'bca', 'BolC2t06351H' => 'bol', 'BolC2t06352H' => 'bol', 'BolC3t12993H' => 'bol', 'BolC4t23525H' => 'bol', 'BolC4t27475H' => 'bol', 'BolC5t29025H' => 'bol', 'BolC5t29026H' => 'bol', 'BolC8t46898H' => 'bol', 'BolC8t46899H' => 'bol', 'BolC8t52630H' => 'bol', 'BolC8t52765H' => 'bol', 'BolC9t53824H' => 'bol', 'BraA03t09760Z' => 'bra', 'BraA03t10990Z' => 'bra', 'BraA05t20413Z' => 'bra', 'BraA08t35602Z' => 'bra', 'BraA09t36458Z' => 'bra', 'BraA09t42018Z' => 'bra', 'BraA09t42129Z' => 'bra', 'BraA10t42536Z' => 'bra', 'BraA10t42537Z' => 'bra', 'C01p10690' => 'bna', 'C02p03890' => 'bna', 'C02p03900' => 'bna', 'C03p04620' => 'bna', 'C04p19870' => 'bna', 'C04p59670' => 'bna', 'C05p02460' => 'bna', 'C05p02470' => 'bna', 'C08p00980' => 'bna', 'C08p00990' => 'bna', 'C08p51030' => 'bna', 'C08p52360' => 'bna', 'C09p09120' => 'bna', 'CAN.G19.15' => 'can', 'CAN.G251.10' => 'can', 'CAN.G251.9' => 'can', 'CAN.G398.24' => 'can', 'CAN.G410.32' => 'can', 'CAN.G881.2' => 'can', 'CANSAT01G3025' => 'cansat', 'CANSAT78G1211' => 'cansat', 'CANSAT78G1218' => 'cansat', 'CANSAT78G1521' => 'cansat', 'CANSAT78G1670' => 'cansat', 'CARHR003600' => 'chi', 'CARHR003610' => 'chi', 'CARHR006290' => 'chi', 'CARHR006430' => 'chi', 'CARHR124110' => 'chi', 'CARHR203870' => 'chi', 'CARHR203880' => 'chi', 'CARHR203890' => 'chi', 'CARHR276880' => 'chi', 'Carub.0001s0346' => 'cru', 'Carub.0001s0347' => 'cru', 'Carub.0001s0607' => 'cru', 'Carub.0003s2768' => 'cru', 'Carub.0003s2769' => 'cru', 'Carub.0004s1178' => 'cru', 'Carub.0006s0806' => 'cru', 'Carub.0006s0807' => 'cru', 'Carub.0006s0808' => 'cru', 'Carub.0008s0501' => 'cru', 'Carub.0008s2379' => 'cru', 'Ca_08655_v3' => 'car', 'Ca_08922_v3' => 'car', 'Ca_08923_v3' => 'car', 'Ca_09119_v3' => 'car', 'Ca_09703_v3' => 'car', 'Ca_09705_v3' => 'car', 'Ca_09835_v3' => 'car', 'Ca_26403_v3' => 'car', 'Ca_30719_v3' => 'car', 'CBR_g17958' => 'cbr', 'CBR_g40516' => 'cbr', 'Cc00_g05350' => 'ccan', 'Cc01_g18690' => 'ccan', 'Cc03_g04830' => 'ccan', 'Cc03_g04850' => 'ccan', 'CDE02G4469' => 'cde', 'CDE06G0883' => 'cde', 'CDE06G1295' => 'cde', 'CDE06G1390' => 'cde', 'CDE07G0584' => 'cde', 'CDE07G1084' => 'cde', 'CDE08G1259' => 'cde', 'Cfa002341' => 'cfa', 'Cfa024337' => 'cfa', 'Ciclev10004749m.g' => 'ccl', 'Ciclev10006127m.g' => 'ccl', 'Ciclev10019720m.g' => 'ccl', 'Ciclev10022652m.g' => 'ccl', 'CiPaw.01G190400' => 'cil', 'CiPaw.01G190500' => 'cil', 'CiPaw.02G116400' => 'cil', 'CiPaw.02G116500' => 'cil', 'CiPaw.04G183000' => 'cil', 'CiPaw.04G183300' => 'cil', 'ClCG05G004610' => 'cla', 'ClCG05G004620' => 'cla', 'ClCG06G006730' => 'cla', 'ClCG06G006740' => 'cla', 'ClCG11G003690' => 'cla', 'COL.COLO4_08276' => 'col', 'COL.COLO4_08277' => 'col', 'COL.COLO4_15787' => 'col', 'COL.COLO4_15789' => 'col', 'Cpa.g.c44815' => 'cpa', 'Cpa.g.sc52.144' => 'cpa', 'Cpa.g.sc58.46' => 'cpa', 'Cpa.g.sc58.47' => 'cpa', 'Cre08.g360900' => 'cre', 'CsaV3_2G013030' => 'csa', 'CsaV3_2G013050' => 'csa', 'CsaV3_2G015620' => 'csa', 'CsaV3_3G012590' => 'csa', 'CsaV3_3G012600' => 'csa', 'CSS0001641' => 'camsi', 'CSS0008310' => 'camsi', 'CSS0013011' => 'camsi', 'CSS0017147' => 'camsi', 'CSS0022970' => 'camsi', 'CSS0025655' => 'camsi', 'CSS0028665' => 'camsi', 'CSS0029117' => 'camsi', 'CSS0032024' => 'camsi', 'CSS0039681' => 'camsi', 'CSS0046516' => 'camsi', 'CSS0050307' => 'camsi', 'DCAR_005871' => 'dca', 'DCAR_007342' => 'dca', 'DCAR_024228' => 'dca', 'DCAR_027277' => 'dca', 'DCAR_030718' => 'dca', 'Dinv20287' => 'din', 'Dinv22461' => 'din', 'Dinv22464' => 'din', 'Dinv29912' => 'din', 'Dinv29913' => 'din', 'Dinv34580' => 'din', 'Dinv34582' => 'din', 'Dinv44632' => 'din', 'Duzib052G0266' => 'dzi', 'Duzib133G0907' => 'dzi', 'Duzib133G1034' => 'dzi', 'Duzib138G0207' => 'dzi', 'Duzib138G0491' => 'dzi', 'Duzib151G0812' => 'dzi', 'Duzib151G1166' => 'dzi', 'Duzib168G0192' => 'dzi', 'Duzib211G0077' => 'dzi', 'Duzib212G0429' => 'dzi', 'Duzib212G0472' => 'dzi', 'ECA233G2617' => 'eca', 'ECA236G4188' => 'eca', 'ECA240G0936' => 'eca', 'ECA240G1129' => 'eca', 'ECA247G0623' => 'eca', 'EL10Ac5g10451' => 'bvu', 'EL10Ac5g10453' => 'bvu', 'EL10Ac5g10894' => 'bvu', 'Eucgr.H00192' => 'egr', 'Eucgr.H00193' => 'egr', 'Eucgr.H00194' => 'egr', 'Eucgr.J01562' => 'egr', 'Eucgr.K03301' => 'egr', 'FAN02G0632' => 'fan', 'FAN05G5378' => 'fan', 'FAN09G3247' => 'fan', 'FAN12G0435' => 'fan', 'FAN12G2426' => 'fan', 'FAN14G1707' => 'fan', 'FAN14G4725' => 'fan', 'FAN15G2071' => 'fan', 'FAN17G3065' => 'fan', 'FAN19G1376' => 'fan', 'FAN20G0354' => 'fan', 'FAN20G2429' => 'fan', 'FAN20G2658' => 'fan', 'FAN24G2343' => 'fan', 'FAN27G2362' => 'fan', 'FAN28G1765' => 'fan', 'FvH4_1g16020' => 'fve', 'FvH4_2g04890' => 'fve', 'FvH4_2g22270' => 'fve', 'FvH4_4g02630' => 'fve', 'FvH4_4g02640' => 'fve', 'FvH4_6g02650' => 'fve', 'Glyma.02G140600' => 'gma', 'Glyma.03G159900' => 'gma', 'Glyma.05G234800' => 'gma', 'Glyma.07G269600' => 'gma', 'Glyma.08G042300' => 'gma', 'Glyma.10G033500' => 'gma', 'Glyma.10G185200' => 'gma', 'Glyma.17G004300' => 'gma', 'Glyma.19G161900' => 'gma', 'Glyma.20G205100' => 'gma', 'Glyma.20G205200' => 'gma', 'Gohir.A01G139101' => 'ghi', 'Gohir.A02G035600' => 'ghi', 'Gohir.A02G117901' => 'ghi', 'Gohir.A07G210100' => 'ghi', 'Gohir.A07G210200' => 'ghi', 'Gohir.A08G061100' => 'ghi', 'Gohir.A09G223000' => 'ghi', 'Gohir.A09G223100' => 'ghi', 'Gohir.A10G113900' => 'ghi', 'Gohir.A10G114000' => 'ghi', 'Gohir.D02G042300' => 'ghi', 'Gohir.D07G216100' => 'ghi', 'Gohir.D07G216200' => 'ghi', 'Gohir.D08G070400' => 'ghi', 'Gohir.D09G225000' => 'ghi', 'Gohir.D09G225100' => 'ghi', 'Gohir.D10G152300' => 'ghi', 'Gohir.D10G153200' => 'ghi', 'Gohir.D11G133701' => 'ghi', 'Gorai.004G074100' => 'gra', 'Gorai.005G046800' => 'gra', 'Gorai.006G246500' => 'gra', 'Gorai.006G246600' => 'gra', 'Gorai.007G142900' => 'gra', 'Gorai.011G171000' => 'gra', 'Gorai.011G171100' => 'gra', 'Gorai.013G104300' => 'gra', 'Gorai.013G104400' => 'gra', 'GSVIVG01000754001' => 'vvi', 'GSVIVG01000756001' => 'vvi', 'GSVIVG01010903001' => 'vvi', 'GSVIVG01017623001' => 'vvi', 'GSVIVG01018113001' => 'vvi', 'GSVIVG01018116001' => 'vvi', 'GSVIVG01018118001' => 'vvi', 'HanXRQChr03g0076211' => 'han', 'HanXRQChr03g0092431' => 'han', 'HanXRQChr03g0092441' => 'han', 'HanXRQChr03g0092591' => 'han', 'HanXRQChr03g0092671' => 'han', 'HanXRQChr03g0092681' => 'han', 'HanXRQChr03g0092691' => 'han', 'HanXRQChr03g0092701' => 'han', 'HanXRQChr03g0092721' => 'han', 'HanXRQChr03g0092731' => 'han', 'HanXRQChr04g0113681' => 'han', 'HanXRQChr10g0281371' => 'han', 'HanXRQChr11g0337141' => 'han', 'HanXRQChr13g0424521' => 'han', 'HanXRQChr13g0424531' => 'han', 'HanXRQChr13g0424541' => 'han', 'HanXRQChr16g0498221' => 'han', 'Haze_04377' => 'cav', 'Haze_11298' => 'cav', 'Haze_24547' => 'cav', 'Haze_24550' => 'cav', 'Haze_26587' => 'cav', 'Hma1.2p1_0650F.1_g195410' => 'hma', 'Hma1.2p1_0893F.1_g233470' => 'hma', 'HPP92_006508' => 'vpl', 'HPP92_024780' => 'vpl', 'Hund02688' => 'sun', 'Hund09380' => 'sun', 'Hund09381' => 'sun', 'Hund09832' => 'sun', 'Hund09833' => 'sun', 'Hund11351' => 'sun', 'Hund11513' => 'sun', 'Lalb_Chr06g0162591' => 'lal', 'Lalb_Chr06g0162601' => 'lal', 'Lalb_Chr06g0169321' => 'lal', 'Lalb_Chr09g0330951' => 'lal', 'Lalb_Chr16g0387631' => 'lal', 'Lalb_Chr21g0306241' => 'lal', 'Lalb_Chr25g0290051' => 'lal', 'Lalb_Chr25g0290061' => 'lal', 'Lalb_Chr25g0290071' => 'lal', 'Lj1g0003876' => 'lja', 'Lj1P1207T36' => 'lonja', 'Lj2C1156G12' => 'lonja', 'Lj3A793G39' => 'lonja', 'Lj3C580G2' => 'lonja', 'Lj3C780G2' => 'lonja', 'Lj3C780T4' => 'lonja', 'Lj3C793G9' => 'lonja', 'Lj4g0012960' => 'lja', 'Lj5g0021252' => 'lja', 'Lj5g0021484' => 'lja', 'Lj5g0024528' => 'lja', 'Lj6A399T12' => 'lonja', 'Lj6A656G65' => 'lonja', 'Lsat_1_v5_gn_3_125500' => 'lsa', 'Lsat_1_v5_gn_3_125540' => 'lsa', 'Lsat_1_v5_gn_5_72701' => 'lsa', 'Lsat_1_v5_gn_8_91560' => 'lsa', 'Lsat_1_v5_gn_9_9640' => 'lsa', 'Manes.01G200600' => 'mes', 'Manes.01G200700' => 'mes', 'Manes.03G168900' => 'mes', 'Manes.03G169000' => 'mes', 'Manes.05G085801' => 'mes', 'Manes.05G086200' => 'mes', 'Manes.15G036700' => 'mes', 'Manes.15G036900' => 'mes', 'Mapoly0004s0172' => 'mpo', 'Mapoly0023s0001' => 'mpo', 'Mapoly0142s0012' => 'mpo', 'MBI01_g32854_MAGBIO' => 'mbi', 'MBI11_g24427_MAGBIO' => 'mbi', 'MBI11_g47319_MAGBIO' => 'mbi', 'MCO01G433' => 'mco', 'MD00G1187800' => 'mdo', 'MD04G1226500' => 'mdo', 'MD05G1203900' => 'mdo', 'MD10G1191100' => 'mdo', 'MD12G1243500' => 'mdo', 'MD13G1207000' => 'mdo', 'MD13G1207100' => 'mdo', 'MD16G1208600' => 'mdo', 'Medtr1g050352' => 'mtr', 'Medtr1g070385' => 'mtr', 'Medtr1g070450' => 'mtr', 'Medtr1g075200' => 'mtr', 'Medtr1g075250' => 'mtr', 'Medtr1g075260' => 'mtr', 'Medtr1g475250' => 'mtr', 'Medtr4g075450' => 'mtr', 'Medtr7g096300' => 'mtr', 'Medtr8g105110' => 'mtr', 'MELO3C006470.2' => 'cme', 'MELO3C006471.2' => 'cme', 'MELO3C020772.2' => 'cme', 'MELO3C026780.2' => 'cme', 'MELO3C026781.2' => 'cme', 'Migut.D00390' => 'egut', 'Migut.G00435' => 'egut', 'Migut.G00436' => 'egut', 'Migut.G00718' => 'egut', 'MSTRG.21891' => 'ama', 'MSTRG.26910' => 'ama', 'MSTRG.4099' => 'ama', 'MSTRG.9925' => 'ama', 'Nitab4.5_0000165g0010' => 'nta', 'Nitab4.5_0000209g0180' => 'nta', 'Nitab4.5_0000244g0440' => 'nta', 'Nitab4.5_0000525g0220' => 'nta', 'Nitab4.5_0001597g0020' => 'nta', 'Nitab4.5_0001878g0040' => 'nta', 'Nitab4.5_0001878g0060' => 'nta', 'Nitab4.5_0002838g0100' => 'nta', 'Nitab4.5_0002838g0120' => 'nta', 'Nitab4.5_0004798g0030' => 'nta', 'Nitab4.5_0005420g0010' => 'nta', 'Nitab4.5_0005507g0010' => 'nta', 'Nitab4.5_0005574g0020' => 'nta', 'Nitab4.5_0005838g0010' => 'nta', 'Nitab4.5_0010580g0020' => 'nta', 'Nn1g02599' => 'nnu', 'Nn1g02608' => 'nnu', 'Nn3g17742' => 'nnu', 'Nn3g19534' => 'nnu', 'Nn3g19535' => 'nnu', 'Oeu008790.1' => 'oeu', 'Oeu008792.1' => 'oeu', 'Oeu032590.1' => 'oeu', 'Oeu035349.1' => 'oeu', 'Oeu049791.1' => 'oeu', 'Os01g0774500' => 'osa', 'Os03g0628800' => 'osa', 'Os03g0798600' => 'osa', 'Os05g0508800' => 'osa', 'Peaxi162Scf00036g02018' => 'pax', 'Peaxi162Scf00578g00032' => 'pax', 'Peaxi162Scf00578g00317' => 'pax', 'Peaxi162Scf00785g00114' => 'pax', 'Peaxi162Scf00813g00119' => 'pax', 'Peaxi162Scf00906g00227' => 'pax', 'PGR004G0875' => 'pgr', 'PGR004G2424' => 'pgr', 'PGR031G1239' => 'pgr', 'PGR031G2474' => 'pgr', 'PGR044G0423' => 'pgr', 'PGSC0003DMG400001128' => 'stu', 'PGSC0003DMG400007336' => 'stu', 'PGSC0003DMG400016318' => 'stu', 'PGSC0003DMG400016319' => 'stu', 'PGSC0003DMG400018074' => 'stu', 'Phvul.001G157700' => 'pvu', 'Phvul.002G148550' => 'pvu', 'Phvul.002G320200' => 'pvu', 'Phvul.003G089200' => 'pvu', 'Phvul.007G126000' => 'pvu', 'Phvul.007G126100' => 'pvu', 'Phvul.007G178000' => 'pvu', 'Phvul.007G178200' => 'pvu', 'Potri.002G043000' => 'ptr', 'Potri.002G043200' => 'ptr', 'Potri.003G123750' => 'ptr', 'Potri.005G055401' => 'ptr', 'Potri.005G219700' => 'ptr', 'Potri.005G220000' => 'ptr', 'Potri.008G161901' => 'ptr', 'Potri.008G162000' => 'ptr', 'Potri.008G162400' => 'ptr', 'Potri.010G076900' => 'ptr', 'Pp3c12_9180' => 'ppa', 'Pp3c13_19770' => 'ppa', 'Pp3c14_22950' => 'ppa', 'Pp3c16_12160' => 'ppa', 'Pp3c27_7820' => 'ppa', 'Pp3c2_3490' => 'ppa', 'Pp3c3_23700' => 'ppa', 'Pp3c3_36520' => 'ppa', 'Pp3c4_15250' => 'ppa', 'PRCOL_00007002' => 'pco', 'Prupe.1G030600' => 'ppe', 'Prupe.1G030700' => 'ppe', 'Prupe.6G345200' => 'ppe', 'Prupe.8G230300' => 'ppe', 'Prupe.8G230500' => 'ppe', 'Psat3g059600' => 'psa', 'Psat5g200920' => 'psa', 'Psat6g056440' => 'psa', 'Psat6g057360' => 'psa', 'Psat6g134120' => 'psa', 'Psat6g134160' => 'psa', 'Psat7g008640' => 'psa', 'Psat7g185240' => 'psa', 'PSO017G1330' => 'pso', 'PSO063G6097' => 'pso', 'PSO170G0835' => 'pso', 'PSO170G2499' => 'pso', 'PSO210G5058' => 'pso', 'PSO210G6154' => 'pso', 'PSO585G0031' => 'pso', 'PSO832G0264' => 'pso', 'PSO832G4288' => 'pso', 'QL03p027355' => 'qlo', 'QL03p027430' => 'qlo', 'QL04p081380' => 'qlo', 'QL06p015642' => 'qlo', 'QL06p015650' => 'qlo', 'QL06p015686' => 'qlo', 'QL12p042927' => 'qlo', 'QL93p1863_0035' => 'qlo', 'RcHm_v2.0_Chr3g0450581' => 'rch', 'RcHm_v2.0_Chr4g0390371' => 'rch', 'RcHm_v2.0_Chr4g0390381' => 'rch', 'RcHm_v2.0_Chr4g0390491' => 'rch', 'RcHm_v2.0_Chr4g0390501' => 'rch', 'RcHm_v2.0_Chr6g0289231' => 'rch', 'Rhsim04G0190400' => 'rsi', 'Rhsim04G0190500' => 'rsi', 'Rhsim04G0190600' => 'rsi', 'Rhsim13G0031400' => 'rsi', 'Rhsim13G0165600' => 'rsi', 'RhsimUnG0114600' => 'rsi', 'RhsimUnG0114700' => 'rsi', 'Sabra02G0034800' => 'sbr', 'Sabra02G0035100' => 'sbr', 'Sabra05G0168600' => 'sbr', 'Sabra05G0168800' => 'sbr', 'Sabra08G0123700' => 'sbr', 'Sabra10G0031900' => 'sbr', 'Sabra13G0039000' => 'sbr', 'SalBow2G0782' => 'sbo', 'SalBow2G1403' => 'sbo', 'SalBow4G0074' => 'sbo', 'SalBow4G2635' => 'sbo', 'SalBow5G3010' => 'sbo', 'Sc05g0000870' => 'sci', 'Sc05g0000890' => 'sci', 'Sc13g0005000' => 'sci', 'Sc13g0005030' => 'sci', 'Sc19g0003790' => 'sci', 'Sc19g0003800' => 'sci', 'Sed0003467' => 'sed', 'Sed0009355' => 'sed', 'Sed0009894' => 'sed', 'Sed0011972' => 'sed', 'Sed0021483' => 'sed', 'Sed0021750' => 'sed', 'Sed0026279' => 'sed', 'SEGI_05312' => 'sgi', 'SEGI_10112' => 'sgi', 'SEGI_15835' => 'sgi', 'SEGI_30386' => 'sgi', 'SEGI_34122' => 'sgi', 'SEGI_35063' => 'sgi', 'SGA_v2.0_scaffold101G29794' => 'sas', 'SGA_v2.0_scaffold1G00573' => 'sas', 'SGA_v2.0_scaffold79G25637' => 'sas', 'SGA_v2.0_scaffold88G27283' => 'sas', 'SGA_v2.0_scaffold88G27285' => 'sas', 'SGA_v2.0_scaffold88G27331' => 'sas', 'SHI09937' => 'shi', 'SMO119G0302' => 'smo', 'SMO137G0231' => 'smo', 'SMO367G1151' => 'smo', 'Solyc02g082000.3' => 'sly', 'Solyc06g031670.3' => 'sly', 'Solyc06g053810.3' => 'sly', 'Solyc07g025457.1' => 'sly', 'Solyc08g059740.1' => 'sly', 'Solyc08g059750.3' => 'sly', 'Solyc09g083370.3' => 'sly', 'Solyc12g038950.3' => 'sly', 'Sopen02g026630' => 'spe', 'Sopen06g018930' => 'spe', 'Sopen06g018940' => 'spe', 'Sopen08g009460' => 'spe', 'Sopen09g032290' => 'spe', 'Sp1g03080' => 'spa', 'Sp1g03090' => 'spa', 'Sp1g05480' => 'spa', 'Sp2g07860' => 'spa', 'Sp2g08430' => 'spa', 'Sp2g08440' => 'spa', 'Sp2g26200' => 'spa', 'Sp4g13170' => 'spa', 'Sp6g33840' => 'spa', 'SpUn1204_0010' => 'spa', 'TAR365G0908' => 'tar', 'TAR381G1270' => 'tar', 'TAR381G1651' => 'tar', 'TAR625G1131' => 'tar', 'TAR633G0962' => 'tar', 'TAR633G1729' => 'tar', 'TAR633G1864' => 'tar', 'TAR636G0221' => 'tar', 'TAR636G0314' => 'tar', 'TAR636G3202' => 'tar', 'THA.LOC104800805' => 'tha', 'THA.LOC104801096' => 'tha', 'THA.LOC104801555' => 'tha', 'THA.LOC104808491' => 'tha', 'THA.LOC104808595' => 'tha', 'THA.LOC104815985' => 'tha', 'THA.LOC104822250' => 'tha', 'THA.LOC104826071' => 'tha', 'Thecc.01G265200' => 'tca', 'Thecc.01G265300' => 'tca', 'Thecc.01G265700' => 'tca', 'Thecc.03G109100' => 'tca', 'Thecc.04G245900' => 'tca', 'Thecc.04G246000' => 'tca', 'Thhalv10003334m.g' => 'esa', 'Thhalv10005508m.g' => 'esa', 'Thhalv10005643m.g' => 'esa', 'Thhalv10007316m.g' => 'esa', 'Thhalv10009006m.g' => 'esa', 'Thhalv10009309m.g' => 'esa', 'Thhalv10014917m.g' => 'esa', 'Thhalv10014919m.g' => 'esa', 'Thhalv10015393m.g' => 'esa', 'Thhalv10016515m.g' => 'esa', 'Thhalv10029242m.g' => 'esa', 'TPR.G16654' => 'tpr', 'TPR.G20589' => 'tpr', 'TPR.G23029' => 'tpr', 'TPR.G27731' => 'tpr', 'TPR.G28889' => 'tpr', 'TPR.G28899' => 'tpr', 'TPR.G30846' => 'tpr', 'TPR.G5452' => 'tpr', 'TPR.G5713' => 'tpr', 'TPR.G9046' => 'tpr', 'TPR.G9061' => 'tpr', 'TWI09G1075' => 'twi', 'TWI12G0806' => 'twi', 'TWI18G0108' => 'twi', 'TWI53G1361' => 'twi', 'TWI73G0185' => 'twi', 'TWI73G0427' => 'twi', 'unitig_37.g12001' => 'ugi', 'unitig_747.g21660' => 'ugi', 'unitig_748.g7232' => 'ugi', 'unitig_748.g7315' => 'ugi', 'unitig_85.g27262' => 'ugi', 'unitig_92.g28220' => 'ugi', 'vmacro02632' => 'vma', 'vmacro08410' => 'vma', 'vmacro08411' => 'vma', 'vmacro15407' => 'vma', 'VMungo0251G3619' => 'vmu', 'VMungo0720G1204' => 'vmu', 'VMungo0720G1918' => 'vmu', 'VMungo0720G2387' => 'vmu', 'VMungo0720G2961' => 'vmu', 'VMungo1215G2154' => 'vmu', 'VMungo1383G2411' => 'vmu', 'Zm00001eb051130' => 'zma', 'Zm00001eb116830' => 'zma', 'Zm00001eb116850' => 'zma', 'Zm00001eb151740' => 'zma', 'Zm00001eb292360' => 'zma', 'Zm00001eb301640' => 'zma' ) $gf_id = 'HOM05D000856' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000856' ) $data_identifier = 'HOM05D000856' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 13, 'ath' => (int) 10, 'atr' => (int) 1, 'acertr' => (int) 8, 'cqu' => (int) 6, 'bca' => (int) 21, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 11, 'car' => (int) 9, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 8, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 5, 'fan' => (int) 16, 'fve' => (int) 6, 'gma' => (int) 11, 'ghi' => (int) 19, 'gra' => (int) 9, 'vvi' => (int) 7, 'han' => (int) 17, 'cav' => (int) 5, 'hma' => (int) 2, 'vpl' => (int) 2, 'sun' => (int) 7, 'lal' => (int) 9, 'lja' => (int) 5, 'lonja' => (int) 9, 'lsa' => (int) 5, 'mes' => (int) 8, 'mpo' => (int) 3, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 10, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 15, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 9, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 9, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 6, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 5, 'spa' => (int) 10, 'tar' => (int) 10, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 11, 'tpr' => (int) 11, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 4, 'vmu' => (int) 7, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb301640' $species_info = array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ) $local_species = 'smo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000856', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p00010' => 'bna', 'A03p04160' => 'bna', 'A03p17160' => 'bna', 'A04p23370' => 'bna', 'A05p14860' => 'bna', 'A08p37020' => 'bna', 'A09p08050' => 'bna', 'A09p66800' => 'bna', 'A09p67940' => 'bna', 'A10p02680' => 'bna', 'A10p05320' => 'bna', 'Aa31LG1G20560' => 'aar', 'Aa31LG1G20610' => 'aar', 'Aa31LG1G7810' => 'aar', 'Aa31LG5G3590' => 'aar', 'Aa31LG5G6140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3819' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4683' => 'aag', 'Actinidia04480' => 'ach', 'Actinidia05466' => 'ach', 'Actinidia08445' => 'ach', 'Actinidia21170' => 'ach', 'Actinidia24812' => 'ach', 'Actinidia24951' => 'ach', 'Actinidia40088' => 'ach', 'Ah.02g111660' => 'amhyb', 'Ah.11g048900' => 'amhyb', 'Ah.11g049910' => 'amhyb', 'AL1G13870' => 'aly', 'AL1G13880' => 'aly', 'AL1G16760' => 'aly', 'AL390U10020' => 'aly', 'AL4G25520' => 'aly', 'AL6G19890' => 'aly', 'AL6G19900' => 'aly', 'AL6G19910' => 'aly', 'AL8G40100' => 'aly', 'Aqoxy2G03562' => 'aox', 'Aqoxy5G00316' => 'aox', 'Aqoxy5G00926' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1628KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1H403S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2FU6SJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.882I6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8YRY2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YN1SN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AF70II' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZA8L1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F916KL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHRD8H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KTZ8QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S22EMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8M29T' => 'arhy', 'AT1G04270' => 'ath', 'AT1G04280' => 'ath', 'AT1G06750' => 'ath', 'AT1G33850' => 'ath', 'AT2G30630' => 'ath', 'AT5G09490' => 'ath', 'AT5G09500' => 'ath', 'AT5G09510' => 'ath', 'AT5G43640' => 'ath', 'AT5G63070' => 'ath', 'ATR0605G315' => 'atr', 'Atru.chr11.175' => 'acertr', 'Atru.chr11.653' => 'acertr', 'Atru.chr3.1616' => 'acertr', 'Atru.chr4.2230' => 'acertr', 'Atru.chr4.2232' => 'acertr', 'Atru.chr5.1598' => 'acertr', 'Atru.chr5.1600' => 'acertr', 'Atru.chr5.2188' => 'acertr', 'AUR62008326' => 'cqu', 'AUR62011922' => 'cqu', 'AUR62011924' => 'cqu', 'AUR62021771' => 'cqu', 'AUR62032237' => 'cqu', 'AUR62032240' => 'cqu', 'BcaB01g05572' => 'bca', 'BcaB02g10337' => 'bca', 'BcaB04g19944' => 'bca', 'BcaB05g21548' => 'bca', 'BcaB05g21549' => 'bca', 'BcaB05g23227' => 'bca', 'BcaB06g26256' => 'bca', 'BcaB06g26257' => 'bca', 'BcaB06g28379' => 'bca', 'BcaC02g11159' => 'bca', 'BcaC03g13258' => 'bca', 'BcaC03g13259' => 'bca', 'BcaC05g24456' => 'bca', 'BcaC05g24457' => 'bca', 'BcaC07g36922' => 'bca', 'BcaC07g36923' => 'bca', 'BcaC07g42050' => 'bca', 'BcaC07g42176' => 'bca', 'BcaC07g42195' => 'bca', 'BcaC07g42196' => 'bca', 'BcaNung06674' => 'bca', 'BolC2t06351H' => 'bol', 'BolC2t06352H' => 'bol', 'BolC3t12993H' => 'bol', 'BolC4t23525H' => 'bol', 'BolC4t27475H' => 'bol', 'BolC5t29025H' => 'bol', 'BolC5t29026H' => 'bol', 'BolC8t46898H' => 'bol', 'BolC8t46899H' => 'bol', 'BolC8t52630H' => 'bol', 'BolC8t52765H' => 'bol', 'BolC9t53824H' => 'bol', 'BraA03t09760Z' => 'bra', 'BraA03t10990Z' => 'bra', 'BraA05t20413Z' => 'bra', 'BraA08t35602Z' => 'bra', 'BraA09t36458Z' => 'bra', 'BraA09t42018Z' => 'bra', 'BraA09t42129Z' => 'bra', 'BraA10t42536Z' => 'bra', 'BraA10t42537Z' => 'bra', 'C01p10690' => 'bna', 'C02p03890' => 'bna', 'C02p03900' => 'bna', 'C03p04620' => 'bna', 'C04p19870' => 'bna', 'C04p59670' => 'bna', 'C05p02460' => 'bna', 'C05p02470' => 'bna', 'C08p00980' => 'bna', 'C08p00990' => 'bna', 'C08p51030' => 'bna', 'C08p52360' => 'bna', 'C09p09120' => 'bna', 'CAN.G19.15' => 'can', 'CAN.G251.10' => 'can', 'CAN.G251.9' => 'can', 'CAN.G398.24' => 'can', 'CAN.G410.32' => 'can', 'CAN.G881.2' => 'can', 'CANSAT01G3025' => 'cansat', 'CANSAT78G1211' => 'cansat', 'CANSAT78G1218' => 'cansat', 'CANSAT78G1521' => 'cansat', 'CANSAT78G1670' => 'cansat', 'CARHR003600' => 'chi', 'CARHR003610' => 'chi', 'CARHR006290' => 'chi', 'CARHR006430' => 'chi', 'CARHR124110' => 'chi', 'CARHR203870' => 'chi', 'CARHR203880' => 'chi', 'CARHR203890' => 'chi', 'CARHR276880' => 'chi', 'Carub.0001s0346' => 'cru', 'Carub.0001s0347' => 'cru', 'Carub.0001s0607' => 'cru', 'Carub.0003s2768' => 'cru', 'Carub.0003s2769' => 'cru', 'Carub.0004s1178' => 'cru', 'Carub.0006s0806' => 'cru', 'Carub.0006s0807' => 'cru', 'Carub.0006s0808' => 'cru', 'Carub.0008s0501' => 'cru', 'Carub.0008s2379' => 'cru', 'Ca_08655_v3' => 'car', 'Ca_08922_v3' => 'car', 'Ca_08923_v3' => 'car', 'Ca_09119_v3' => 'car', 'Ca_09703_v3' => 'car', 'Ca_09705_v3' => 'car', 'Ca_09835_v3' => 'car', 'Ca_26403_v3' => 'car', 'Ca_30719_v3' => 'car', 'CBR_g17958' => 'cbr', 'CBR_g40516' => 'cbr', 'Cc00_g05350' => 'ccan', 'Cc01_g18690' => 'ccan', 'Cc03_g04830' => 'ccan', 'Cc03_g04850' => 'ccan', 'CDE02G4469' => 'cde', 'CDE06G0883' => 'cde', 'CDE06G1295' => 'cde', 'CDE06G1390' => 'cde', 'CDE07G0584' => 'cde', 'CDE07G1084' => 'cde', 'CDE08G1259' => 'cde', 'Cfa002341' => 'cfa', 'Cfa024337' => 'cfa', 'Ciclev10004749m.g' => 'ccl', 'Ciclev10006127m.g' => 'ccl', 'Ciclev10019720m.g' => 'ccl', 'Ciclev10022652m.g' => 'ccl', 'CiPaw.01G190400' => 'cil', 'CiPaw.01G190500' => 'cil', 'CiPaw.02G116400' => 'cil', 'CiPaw.02G116500' => 'cil', 'CiPaw.04G183000' => 'cil', 'CiPaw.04G183300' => 'cil', 'ClCG05G004610' => 'cla', 'ClCG05G004620' => 'cla', 'ClCG06G006730' => 'cla', 'ClCG06G006740' => 'cla', 'ClCG11G003690' => 'cla', 'COL.COLO4_08276' => 'col', 'COL.COLO4_08277' => 'col', 'COL.COLO4_15787' => 'col', 'COL.COLO4_15789' => 'col', 'Cpa.g.c44815' => 'cpa', 'Cpa.g.sc52.144' => 'cpa', 'Cpa.g.sc58.46' => 'cpa', 'Cpa.g.sc58.47' => 'cpa', 'Cre08.g360900' => 'cre', 'CsaV3_2G013030' => 'csa', 'CsaV3_2G013050' => 'csa', 'CsaV3_2G015620' => 'csa', 'CsaV3_3G012590' => 'csa', 'CsaV3_3G012600' => 'csa', 'CSS0001641' => 'camsi', 'CSS0008310' => 'camsi', 'CSS0013011' => 'camsi', 'CSS0017147' => 'camsi', 'CSS0022970' => 'camsi', 'CSS0025655' => 'camsi', 'CSS0028665' => 'camsi', 'CSS0029117' => 'camsi', 'CSS0032024' => 'camsi', 'CSS0039681' => 'camsi', 'CSS0046516' => 'camsi', 'CSS0050307' => 'camsi', 'DCAR_005871' => 'dca', 'DCAR_007342' => 'dca', 'DCAR_024228' => 'dca', 'DCAR_027277' => 'dca', 'DCAR_030718' => 'dca', 'Dinv20287' => 'din', 'Dinv22461' => 'din', 'Dinv22464' => 'din', 'Dinv29912' => 'din', 'Dinv29913' => 'din', 'Dinv34580' => 'din', 'Dinv34582' => 'din', 'Dinv44632' => 'din', 'Duzib052G0266' => 'dzi', 'Duzib133G0907' => 'dzi', 'Duzib133G1034' => 'dzi', 'Duzib138G0207' => 'dzi', 'Duzib138G0491' => 'dzi', 'Duzib151G0812' => 'dzi', 'Duzib151G1166' => 'dzi', 'Duzib168G0192' => 'dzi', 'Duzib211G0077' => 'dzi', 'Duzib212G0429' => 'dzi', 'Duzib212G0472' => 'dzi', 'ECA233G2617' => 'eca', 'ECA236G4188' => 'eca', 'ECA240G0936' => 'eca', 'ECA240G1129' => 'eca', 'ECA247G0623' => 'eca', 'EL10Ac5g10451' => 'bvu', 'EL10Ac5g10453' => 'bvu', 'EL10Ac5g10894' => 'bvu', 'Eucgr.H00192' => 'egr', 'Eucgr.H00193' => 'egr', 'Eucgr.H00194' => 'egr', 'Eucgr.J01562' => 'egr', 'Eucgr.K03301' => 'egr', 'FAN02G0632' => 'fan', 'FAN05G5378' => 'fan', 'FAN09G3247' => 'fan', 'FAN12G0435' => 'fan', 'FAN12G2426' => 'fan', 'FAN14G1707' => 'fan', 'FAN14G4725' => 'fan', 'FAN15G2071' => 'fan', 'FAN17G3065' => 'fan', 'FAN19G1376' => 'fan', 'FAN20G0354' => 'fan', 'FAN20G2429' => 'fan', 'FAN20G2658' => 'fan', 'FAN24G2343' => 'fan', 'FAN27G2362' => 'fan', 'FAN28G1765' => 'fan', 'FvH4_1g16020' => 'fve', 'FvH4_2g04890' => 'fve', 'FvH4_2g22270' => 'fve', 'FvH4_4g02630' => 'fve', 'FvH4_4g02640' => 'fve', 'FvH4_6g02650' => 'fve', 'Glyma.02G140600' => 'gma', 'Glyma.03G159900' => 'gma', 'Glyma.05G234800' => 'gma', 'Glyma.07G269600' => 'gma', 'Glyma.08G042300' => 'gma', 'Glyma.10G033500' => 'gma', 'Glyma.10G185200' => 'gma', 'Glyma.17G004300' => 'gma', 'Glyma.19G161900' => 'gma', 'Glyma.20G205100' => 'gma', 'Glyma.20G205200' => 'gma', 'Gohir.A01G139101' => 'ghi', 'Gohir.A02G035600' => 'ghi', 'Gohir.A02G117901' => 'ghi', 'Gohir.A07G210100' => 'ghi', 'Gohir.A07G210200' => 'ghi', 'Gohir.A08G061100' => 'ghi', 'Gohir.A09G223000' => 'ghi', 'Gohir.A09G223100' => 'ghi', 'Gohir.A10G113900' => 'ghi', 'Gohir.A10G114000' => 'ghi', 'Gohir.D02G042300' => 'ghi', 'Gohir.D07G216100' => 'ghi', 'Gohir.D07G216200' => 'ghi', 'Gohir.D08G070400' => 'ghi', 'Gohir.D09G225000' => 'ghi', 'Gohir.D09G225100' => 'ghi', 'Gohir.D10G152300' => 'ghi', 'Gohir.D10G153200' => 'ghi', 'Gohir.D11G133701' => 'ghi', 'Gorai.004G074100' => 'gra', 'Gorai.005G046800' => 'gra', 'Gorai.006G246500' => 'gra', 'Gorai.006G246600' => 'gra', 'Gorai.007G142900' => 'gra', 'Gorai.011G171000' => 'gra', 'Gorai.011G171100' => 'gra', 'Gorai.013G104300' => 'gra', 'Gorai.013G104400' => 'gra', 'GSVIVG01000754001' => 'vvi', 'GSVIVG01000756001' => 'vvi', 'GSVIVG01010903001' => 'vvi', 'GSVIVG01017623001' => 'vvi', 'GSVIVG01018113001' => 'vvi', 'GSVIVG01018116001' => 'vvi', 'GSVIVG01018118001' => 'vvi', 'HanXRQChr03g0076211' => 'han', 'HanXRQChr03g0092431' => 'han', 'HanXRQChr03g0092441' => 'han', 'HanXRQChr03g0092591' => 'han', 'HanXRQChr03g0092671' => 'han', 'HanXRQChr03g0092681' => 'han', 'HanXRQChr03g0092691' => 'han', 'HanXRQChr03g0092701' => 'han', 'HanXRQChr03g0092721' => 'han', 'HanXRQChr03g0092731' => 'han', 'HanXRQChr04g0113681' => 'han', 'HanXRQChr10g0281371' => 'han', 'HanXRQChr11g0337141' => 'han', 'HanXRQChr13g0424521' => 'han', 'HanXRQChr13g0424531' => 'han', 'HanXRQChr13g0424541' => 'han', 'HanXRQChr16g0498221' => 'han', 'Haze_04377' => 'cav', 'Haze_11298' => 'cav', 'Haze_24547' => 'cav', 'Haze_24550' => 'cav', 'Haze_26587' => 'cav', 'Hma1.2p1_0650F.1_g195410' => 'hma', 'Hma1.2p1_0893F.1_g233470' => 'hma', 'HPP92_006508' => 'vpl', 'HPP92_024780' => 'vpl', 'Hund02688' => 'sun', 'Hund09380' => 'sun', 'Hund09381' => 'sun', 'Hund09832' => 'sun', 'Hund09833' => 'sun', 'Hund11351' => 'sun', 'Hund11513' => 'sun', 'Lalb_Chr06g0162591' => 'lal', 'Lalb_Chr06g0162601' => 'lal', 'Lalb_Chr06g0169321' => 'lal', 'Lalb_Chr09g0330951' => 'lal', 'Lalb_Chr16g0387631' => 'lal', 'Lalb_Chr21g0306241' => 'lal', 'Lalb_Chr25g0290051' => 'lal', 'Lalb_Chr25g0290061' => 'lal', 'Lalb_Chr25g0290071' => 'lal', 'Lj1g0003876' => 'lja', 'Lj1P1207T36' => 'lonja', 'Lj2C1156G12' => 'lonja', 'Lj3A793G39' => 'lonja', 'Lj3C580G2' => 'lonja', 'Lj3C780G2' => 'lonja', 'Lj3C780T4' => 'lonja', 'Lj3C793G9' => 'lonja', 'Lj4g0012960' => 'lja', 'Lj5g0021252' => 'lja', 'Lj5g0021484' => 'lja', 'Lj5g0024528' => 'lja', 'Lj6A399T12' => 'lonja', 'Lj6A656G65' => 'lonja', 'Lsat_1_v5_gn_3_125500' => 'lsa', 'Lsat_1_v5_gn_3_125540' => 'lsa', 'Lsat_1_v5_gn_5_72701' => 'lsa', 'Lsat_1_v5_gn_8_91560' => 'lsa', 'Lsat_1_v5_gn_9_9640' => 'lsa', 'Manes.01G200600' => 'mes', 'Manes.01G200700' => 'mes', 'Manes.03G168900' => 'mes', 'Manes.03G169000' => 'mes', 'Manes.05G085801' => 'mes', 'Manes.05G086200' => 'mes', 'Manes.15G036700' => 'mes', 'Manes.15G036900' => 'mes', 'Mapoly0004s0172' => 'mpo', 'Mapoly0023s0001' => 'mpo', 'Mapoly0142s0012' => 'mpo', 'MBI01_g32854_MAGBIO' => 'mbi', 'MBI11_g24427_MAGBIO' => 'mbi', 'MBI11_g47319_MAGBIO' => 'mbi', 'MCO01G433' => 'mco', 'MD00G1187800' => 'mdo', 'MD04G1226500' => 'mdo', 'MD05G1203900' => 'mdo', 'MD10G1191100' => 'mdo', 'MD12G1243500' => 'mdo', 'MD13G1207000' => 'mdo', 'MD13G1207100' => 'mdo', 'MD16G1208600' => 'mdo', 'Medtr1g050352' => 'mtr', 'Medtr1g070385' => 'mtr', 'Medtr1g070450' => 'mtr', 'Medtr1g075200' => 'mtr', 'Medtr1g075250' => 'mtr', 'Medtr1g075260' => 'mtr', 'Medtr1g475250' => 'mtr', 'Medtr4g075450' => 'mtr', 'Medtr7g096300' => 'mtr', 'Medtr8g105110' => 'mtr', 'MELO3C006470.2' => 'cme', 'MELO3C006471.2' => 'cme', 'MELO3C020772.2' => 'cme', 'MELO3C026780.2' => 'cme', 'MELO3C026781.2' => 'cme', 'Migut.D00390' => 'egut', 'Migut.G00435' => 'egut', 'Migut.G00436' => 'egut', 'Migut.G00718' => 'egut', 'MSTRG.21891' => 'ama', 'MSTRG.26910' => 'ama', 'MSTRG.4099' => 'ama', 'MSTRG.9925' => 'ama', 'Nitab4.5_0000165g0010' => 'nta', 'Nitab4.5_0000209g0180' => 'nta', 'Nitab4.5_0000244g0440' => 'nta', 'Nitab4.5_0000525g0220' => 'nta', 'Nitab4.5_0001597g0020' => 'nta', 'Nitab4.5_0001878g0040' => 'nta', 'Nitab4.5_0001878g0060' => 'nta', 'Nitab4.5_0002838g0100' => 'nta', 'Nitab4.5_0002838g0120' => 'nta', 'Nitab4.5_0004798g0030' => 'nta', 'Nitab4.5_0005420g0010' => 'nta', 'Nitab4.5_0005507g0010' => 'nta', 'Nitab4.5_0005574g0020' => 'nta', 'Nitab4.5_0005838g0010' => 'nta', 'Nitab4.5_0010580g0020' => 'nta', 'Nn1g02599' => 'nnu', 'Nn1g02608' => 'nnu', 'Nn3g17742' => 'nnu', 'Nn3g19534' => 'nnu', 'Nn3g19535' => 'nnu', 'Oeu008790.1' => 'oeu', 'Oeu008792.1' => 'oeu', 'Oeu032590.1' => 'oeu', 'Oeu035349.1' => 'oeu', 'Oeu049791.1' => 'oeu', 'Os01g0774500' => 'osa', 'Os03g0628800' => 'osa', 'Os03g0798600' => 'osa', 'Os05g0508800' => 'osa', 'Peaxi162Scf00036g02018' => 'pax', 'Peaxi162Scf00578g00032' => 'pax', 'Peaxi162Scf00578g00317' => 'pax', 'Peaxi162Scf00785g00114' => 'pax', 'Peaxi162Scf00813g00119' => 'pax', 'Peaxi162Scf00906g00227' => 'pax', 'PGR004G0875' => 'pgr', 'PGR004G2424' => 'pgr', 'PGR031G1239' => 'pgr', 'PGR031G2474' => 'pgr', 'PGR044G0423' => 'pgr', 'PGSC0003DMG400001128' => 'stu', 'PGSC0003DMG400007336' => 'stu', 'PGSC0003DMG400016318' => 'stu', 'PGSC0003DMG400016319' => 'stu', 'PGSC0003DMG400018074' => 'stu', 'Phvul.001G157700' => 'pvu', 'Phvul.002G148550' => 'pvu', 'Phvul.002G320200' => 'pvu', 'Phvul.003G089200' => 'pvu', 'Phvul.007G126000' => 'pvu', 'Phvul.007G126100' => 'pvu', 'Phvul.007G178000' => 'pvu', 'Phvul.007G178200' => 'pvu', 'Potri.002G043000' => 'ptr', 'Potri.002G043200' => 'ptr', 'Potri.003G123750' => 'ptr', 'Potri.005G055401' => 'ptr', 'Potri.005G219700' => 'ptr', 'Potri.005G220000' => 'ptr', 'Potri.008G161901' => 'ptr', 'Potri.008G162000' => 'ptr', 'Potri.008G162400' => 'ptr', 'Potri.010G076900' => 'ptr', 'Pp3c12_9180' => 'ppa', 'Pp3c13_19770' => 'ppa', 'Pp3c14_22950' => 'ppa', 'Pp3c16_12160' => 'ppa', 'Pp3c27_7820' => 'ppa', 'Pp3c2_3490' => 'ppa', 'Pp3c3_23700' => 'ppa', 'Pp3c3_36520' => 'ppa', 'Pp3c4_15250' => 'ppa', 'PRCOL_00007002' => 'pco', 'Prupe.1G030600' => 'ppe', 'Prupe.1G030700' => 'ppe', 'Prupe.6G345200' => 'ppe', 'Prupe.8G230300' => 'ppe', 'Prupe.8G230500' => 'ppe', 'Psat3g059600' => 'psa', 'Psat5g200920' => 'psa', 'Psat6g056440' => 'psa', 'Psat6g057360' => 'psa', 'Psat6g134120' => 'psa', 'Psat6g134160' => 'psa', 'Psat7g008640' => 'psa', 'Psat7g185240' => 'psa', 'PSO017G1330' => 'pso', 'PSO063G6097' => 'pso', 'PSO170G0835' => 'pso', 'PSO170G2499' => 'pso', 'PSO210G5058' => 'pso', 'PSO210G6154' => 'pso', 'PSO585G0031' => 'pso', 'PSO832G0264' => 'pso', 'PSO832G4288' => 'pso', 'QL03p027355' => 'qlo', 'QL03p027430' => 'qlo', 'QL04p081380' => 'qlo', 'QL06p015642' => 'qlo', 'QL06p015650' => 'qlo', 'QL06p015686' => 'qlo', 'QL12p042927' => 'qlo', 'QL93p1863_0035' => 'qlo', 'RcHm_v2.0_Chr3g0450581' => 'rch', 'RcHm_v2.0_Chr4g0390371' => 'rch', 'RcHm_v2.0_Chr4g0390381' => 'rch', 'RcHm_v2.0_Chr4g0390491' => 'rch', 'RcHm_v2.0_Chr4g0390501' => 'rch', 'RcHm_v2.0_Chr6g0289231' => 'rch', 'Rhsim04G0190400' => 'rsi', 'Rhsim04G0190500' => 'rsi', 'Rhsim04G0190600' => 'rsi', 'Rhsim13G0031400' => 'rsi', 'Rhsim13G0165600' => 'rsi', 'RhsimUnG0114600' => 'rsi', 'RhsimUnG0114700' => 'rsi', 'Sabra02G0034800' => 'sbr', 'Sabra02G0035100' => 'sbr', 'Sabra05G0168600' => 'sbr', 'Sabra05G0168800' => 'sbr', 'Sabra08G0123700' => 'sbr', 'Sabra10G0031900' => 'sbr', 'Sabra13G0039000' => 'sbr', 'SalBow2G0782' => 'sbo', 'SalBow2G1403' => 'sbo', 'SalBow4G0074' => 'sbo', 'SalBow4G2635' => 'sbo', 'SalBow5G3010' => 'sbo', 'Sc05g0000870' => 'sci', 'Sc05g0000890' => 'sci', 'Sc13g0005000' => 'sci', 'Sc13g0005030' => 'sci', 'Sc19g0003790' => 'sci', 'Sc19g0003800' => 'sci', 'Sed0003467' => 'sed', 'Sed0009355' => 'sed', 'Sed0009894' => 'sed', 'Sed0011972' => 'sed', 'Sed0021483' => 'sed', 'Sed0021750' => 'sed', 'Sed0026279' => 'sed', 'SEGI_05312' => 'sgi', 'SEGI_10112' => 'sgi', 'SEGI_15835' => 'sgi', 'SEGI_30386' => 'sgi', 'SEGI_34122' => 'sgi', 'SEGI_35063' => 'sgi', 'SGA_v2.0_scaffold101G29794' => 'sas', 'SGA_v2.0_scaffold1G00573' => 'sas', 'SGA_v2.0_scaffold79G25637' => 'sas', 'SGA_v2.0_scaffold88G27283' => 'sas', 'SGA_v2.0_scaffold88G27285' => 'sas', 'SGA_v2.0_scaffold88G27331' => 'sas', 'SHI09937' => 'shi', 'SMO119G0302' => 'smo', 'SMO137G0231' => 'smo', 'SMO367G1151' => 'smo', 'Solyc02g082000.3' => 'sly', 'Solyc06g031670.3' => 'sly', 'Solyc06g053810.3' => 'sly', 'Solyc07g025457.1' => 'sly', 'Solyc08g059740.1' => 'sly', 'Solyc08g059750.3' => 'sly', 'Solyc09g083370.3' => 'sly', 'Solyc12g038950.3' => 'sly', 'Sopen02g026630' => 'spe', 'Sopen06g018930' => 'spe', 'Sopen06g018940' => 'spe', 'Sopen08g009460' => 'spe', 'Sopen09g032290' => 'spe', 'Sp1g03080' => 'spa', 'Sp1g03090' => 'spa', 'Sp1g05480' => 'spa', 'Sp2g07860' => 'spa', 'Sp2g08430' => 'spa', 'Sp2g08440' => 'spa', 'Sp2g26200' => 'spa', 'Sp4g13170' => 'spa', 'Sp6g33840' => 'spa', 'SpUn1204_0010' => 'spa', 'TAR365G0908' => 'tar', 'TAR381G1270' => 'tar', 'TAR381G1651' => 'tar', 'TAR625G1131' => 'tar', 'TAR633G0962' => 'tar', 'TAR633G1729' => 'tar', 'TAR633G1864' => 'tar', 'TAR636G0221' => 'tar', 'TAR636G0314' => 'tar', 'TAR636G3202' => 'tar', 'THA.LOC104800805' => 'tha', 'THA.LOC104801096' => 'tha', 'THA.LOC104801555' => 'tha', 'THA.LOC104808491' => 'tha', 'THA.LOC104808595' => 'tha', 'THA.LOC104815985' => 'tha', 'THA.LOC104822250' => 'tha', 'THA.LOC104826071' => 'tha', 'Thecc.01G265200' => 'tca', 'Thecc.01G265300' => 'tca', 'Thecc.01G265700' => 'tca', 'Thecc.03G109100' => 'tca', 'Thecc.04G245900' => 'tca', 'Thecc.04G246000' => 'tca', 'Thhalv10003334m.g' => 'esa', 'Thhalv10005508m.g' => 'esa', 'Thhalv10005643m.g' => 'esa', 'Thhalv10007316m.g' => 'esa', 'Thhalv10009006m.g' => 'esa', 'Thhalv10009309m.g' => 'esa', 'Thhalv10014917m.g' => 'esa', 'Thhalv10014919m.g' => 'esa', 'Thhalv10015393m.g' => 'esa', 'Thhalv10016515m.g' => 'esa', 'Thhalv10029242m.g' => 'esa', 'TPR.G16654' => 'tpr', 'TPR.G20589' => 'tpr', 'TPR.G23029' => 'tpr', 'TPR.G27731' => 'tpr', 'TPR.G28889' => 'tpr', 'TPR.G28899' => 'tpr', 'TPR.G30846' => 'tpr', 'TPR.G5452' => 'tpr', 'TPR.G5713' => 'tpr', 'TPR.G9046' => 'tpr', 'TPR.G9061' => 'tpr', 'TWI09G1075' => 'twi', 'TWI12G0806' => 'twi', 'TWI18G0108' => 'twi', 'TWI53G1361' => 'twi', 'TWI73G0185' => 'twi', 'TWI73G0427' => 'twi', 'unitig_37.g12001' => 'ugi', 'unitig_747.g21660' => 'ugi', 'unitig_748.g7232' => 'ugi', 'unitig_748.g7315' => 'ugi', 'unitig_85.g27262' => 'ugi', 'unitig_92.g28220' => 'ugi', 'vmacro02632' => 'vma', 'vmacro08410' => 'vma', 'vmacro08411' => 'vma', 'vmacro15407' => 'vma', 'VMungo0251G3619' => 'vmu', 'VMungo0720G1204' => 'vmu', 'VMungo0720G1918' => 'vmu', 'VMungo0720G2387' => 'vmu', 'VMungo0720G2961' => 'vmu', 'VMungo1215G2154' => 'vmu', 'VMungo1383G2411' => 'vmu', 'Zm00001eb051130' => 'zma', 'Zm00001eb116830' => 'zma', 'Zm00001eb116850' => 'zma', 'Zm00001eb151740' => 'zma', 'Zm00001eb292360' => 'zma', 'Zm00001eb301640' => 'zma' ), 'gf_id' => 'HOM05D000856', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000856' ), 'data_identifier' => 'HOM05D000856', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000856', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p00010' => 'bna', 'A03p04160' => 'bna', 'A03p17160' => 'bna', 'A04p23370' => 'bna', 'A05p14860' => 'bna', 'A08p37020' => 'bna', 'A09p08050' => 'bna', 'A09p66800' => 'bna', 'A09p67940' => 'bna', 'A10p02680' => 'bna', 'A10p05320' => 'bna', 'Aa31LG1G20560' => 'aar', 'Aa31LG1G20610' => 'aar', 'Aa31LG1G7810' => 'aar', 'Aa31LG5G3590' => 'aar', 'Aa31LG5G6140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3819' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4683' => 'aag', 'Actinidia04480' => 'ach', 'Actinidia05466' => 'ach', 'Actinidia08445' => 'ach', 'Actinidia21170' => 'ach', 'Actinidia24812' => 'ach', 'Actinidia24951' => 'ach', 'Actinidia40088' => 'ach', 'Ah.02g111660' => 'amhyb', 'Ah.11g048900' => 'amhyb', 'Ah.11g049910' => 'amhyb', 'AL1G13870' => 'aly', 'AL1G13880' => 'aly', 'AL1G16760' => 'aly', 'AL390U10020' => 'aly', 'AL4G25520' => 'aly', 'AL6G19890' => 'aly', 'AL6G19900' => 'aly', 'AL6G19910' => 'aly', 'AL8G40100' => 'aly', 'Aqoxy2G03562' => 'aox', 'Aqoxy5G00316' => 'aox', 'Aqoxy5G00926' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1628KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1H403S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2FU6SJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.882I6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8YRY2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YN1SN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AF70II' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZA8L1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F916KL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHRD8H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KTZ8QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S22EMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8M29T' => 'arhy', 'AT1G04270' => 'ath', 'AT1G04280' => 'ath', 'AT1G06750' => 'ath', 'AT1G33850' => 'ath', 'AT2G30630' => 'ath', 'AT5G09490' => 'ath', 'AT5G09500' => 'ath', 'AT5G09510' => 'ath', 'AT5G43640' => 'ath', 'AT5G63070' => 'ath', 'ATR0605G315' => 'atr', 'Atru.chr11.175' => 'acertr', 'Atru.chr11.653' => 'acertr', 'Atru.chr3.1616' => 'acertr', 'Atru.chr4.2230' => 'acertr', 'Atru.chr4.2232' => 'acertr', 'Atru.chr5.1598' => 'acertr', 'Atru.chr5.1600' => 'acertr', 'Atru.chr5.2188' => 'acertr', 'AUR62008326' => 'cqu', 'AUR62011922' => 'cqu', 'AUR62011924' => 'cqu', 'AUR62021771' => 'cqu', 'AUR62032237' => 'cqu', 'AUR62032240' => 'cqu', 'BcaB01g05572' => 'bca', 'BcaB02g10337' => 'bca', 'BcaB04g19944' => 'bca', 'BcaB05g21548' => 'bca', 'BcaB05g21549' => 'bca', 'BcaB05g23227' => 'bca', 'BcaB06g26256' => 'bca', 'BcaB06g26257' => 'bca', 'BcaB06g28379' => 'bca', 'BcaC02g11159' => 'bca', 'BcaC03g13258' => 'bca', 'BcaC03g13259' => 'bca', 'BcaC05g24456' => 'bca', 'BcaC05g24457' => 'bca', 'BcaC07g36922' => 'bca', 'BcaC07g36923' => 'bca', 'BcaC07g42050' => 'bca', 'BcaC07g42176' => 'bca', 'BcaC07g42195' => 'bca', 'BcaC07g42196' => 'bca', 'BcaNung06674' => 'bca', 'BolC2t06351H' => 'bol', 'BolC2t06352H' => 'bol', 'BolC3t12993H' => 'bol', 'BolC4t23525H' => 'bol', 'BolC4t27475H' => 'bol', 'BolC5t29025H' => 'bol', 'BolC5t29026H' => 'bol', 'BolC8t46898H' => 'bol', 'BolC8t46899H' => 'bol', 'BolC8t52630H' => 'bol', 'BolC8t52765H' => 'bol', 'BolC9t53824H' => 'bol', 'BraA03t09760Z' => 'bra', 'BraA03t10990Z' => 'bra', 'BraA05t20413Z' => 'bra', 'BraA08t35602Z' => 'bra', 'BraA09t36458Z' => 'bra', 'BraA09t42018Z' => 'bra', 'BraA09t42129Z' => 'bra', 'BraA10t42536Z' => 'bra', 'BraA10t42537Z' => 'bra', 'C01p10690' => 'bna', 'C02p03890' => 'bna', 'C02p03900' => 'bna', 'C03p04620' => 'bna', 'C04p19870' => 'bna', 'C04p59670' => 'bna', 'C05p02460' => 'bna', 'C05p02470' => 'bna', 'C08p00980' => 'bna', 'C08p00990' => 'bna', 'C08p51030' => 'bna', 'C08p52360' => 'bna', 'C09p09120' => 'bna', 'CAN.G19.15' => 'can', 'CAN.G251.10' => 'can', 'CAN.G251.9' => 'can', 'CAN.G398.24' => 'can', 'CAN.G410.32' => 'can', 'CAN.G881.2' => 'can', 'CANSAT01G3025' => 'cansat', 'CANSAT78G1211' => 'cansat', 'CANSAT78G1218' => 'cansat', 'CANSAT78G1521' => 'cansat', 'CANSAT78G1670' => 'cansat', 'CARHR003600' => 'chi', 'CARHR003610' => 'chi', 'CARHR006290' => 'chi', 'CARHR006430' => 'chi', 'CARHR124110' => 'chi', 'CARHR203870' => 'chi', 'CARHR203880' => 'chi', 'CARHR203890' => 'chi', 'CARHR276880' => 'chi', 'Carub.0001s0346' => 'cru', 'Carub.0001s0347' => 'cru', 'Carub.0001s0607' => 'cru', 'Carub.0003s2768' => 'cru', 'Carub.0003s2769' => 'cru', 'Carub.0004s1178' => 'cru', 'Carub.0006s0806' => 'cru', 'Carub.0006s0807' => 'cru', 'Carub.0006s0808' => 'cru', 'Carub.0008s0501' => 'cru', 'Carub.0008s2379' => 'cru', 'Ca_08655_v3' => 'car', 'Ca_08922_v3' => 'car', 'Ca_08923_v3' => 'car', 'Ca_09119_v3' => 'car', 'Ca_09703_v3' => 'car', 'Ca_09705_v3' => 'car', 'Ca_09835_v3' => 'car', 'Ca_26403_v3' => 'car', 'Ca_30719_v3' => 'car', 'CBR_g17958' => 'cbr', 'CBR_g40516' => 'cbr', 'Cc00_g05350' => 'ccan', 'Cc01_g18690' => 'ccan', 'Cc03_g04830' => 'ccan', 'Cc03_g04850' => 'ccan', 'CDE02G4469' => 'cde', 'CDE06G0883' => 'cde', 'CDE06G1295' => 'cde', 'CDE06G1390' => 'cde', 'CDE07G0584' => 'cde', 'CDE07G1084' => 'cde', 'CDE08G1259' => 'cde', 'Cfa002341' => 'cfa', 'Cfa024337' => 'cfa', 'Ciclev10004749m.g' => 'ccl', 'Ciclev10006127m.g' => 'ccl', 'Ciclev10019720m.g' => 'ccl', 'Ciclev10022652m.g' => 'ccl', 'CiPaw.01G190400' => 'cil', 'CiPaw.01G190500' => 'cil', 'CiPaw.02G116400' => 'cil', 'CiPaw.02G116500' => 'cil', 'CiPaw.04G183000' => 'cil', 'CiPaw.04G183300' => 'cil', 'ClCG05G004610' => 'cla', 'ClCG05G004620' => 'cla', 'ClCG06G006730' => 'cla', 'ClCG06G006740' => 'cla', 'ClCG11G003690' => 'cla', 'COL.COLO4_08276' => 'col', 'COL.COLO4_08277' => 'col', 'COL.COLO4_15787' => 'col', 'COL.COLO4_15789' => 'col', 'Cpa.g.c44815' => 'cpa', 'Cpa.g.sc52.144' => 'cpa', 'Cpa.g.sc58.46' => 'cpa', 'Cpa.g.sc58.47' => 'cpa', 'Cre08.g360900' => 'cre', 'CsaV3_2G013030' => 'csa', 'CsaV3_2G013050' => 'csa', 'CsaV3_2G015620' => 'csa', 'CsaV3_3G012590' => 'csa', 'CsaV3_3G012600' => 'csa', 'CSS0001641' => 'camsi', 'CSS0008310' => 'camsi', 'CSS0013011' => 'camsi', 'CSS0017147' => 'camsi', 'CSS0022970' => 'camsi', 'CSS0025655' => 'camsi', 'CSS0028665' => 'camsi', 'CSS0029117' => 'camsi', 'CSS0032024' => 'camsi', 'CSS0039681' => 'camsi', 'CSS0046516' => 'camsi', 'CSS0050307' => 'camsi', 'DCAR_005871' => 'dca', 'DCAR_007342' => 'dca', 'DCAR_024228' => 'dca', 'DCAR_027277' => 'dca', 'DCAR_030718' => 'dca', 'Dinv20287' => 'din', 'Dinv22461' => 'din', 'Dinv22464' => 'din', 'Dinv29912' => 'din', 'Dinv29913' => 'din', 'Dinv34580' => 'din', 'Dinv34582' => 'din', 'Dinv44632' => 'din', 'Duzib052G0266' => 'dzi', 'Duzib133G0907' => 'dzi', 'Duzib133G1034' => 'dzi', 'Duzib138G0207' => 'dzi', 'Duzib138G0491' => 'dzi', 'Duzib151G0812' => 'dzi', 'Duzib151G1166' => 'dzi', 'Duzib168G0192' => 'dzi', 'Duzib211G0077' => 'dzi', 'Duzib212G0429' => 'dzi', 'Duzib212G0472' => 'dzi', 'ECA233G2617' => 'eca', 'ECA236G4188' => 'eca', 'ECA240G0936' => 'eca', 'ECA240G1129' => 'eca', 'ECA247G0623' => 'eca', 'EL10Ac5g10451' => 'bvu', 'EL10Ac5g10453' => 'bvu', 'EL10Ac5g10894' => 'bvu', 'Eucgr.H00192' => 'egr', 'Eucgr.H00193' => 'egr', 'Eucgr.H00194' => 'egr', 'Eucgr.J01562' => 'egr', 'Eucgr.K03301' => 'egr', 'FAN02G0632' => 'fan', 'FAN05G5378' => 'fan', 'FAN09G3247' => 'fan', 'FAN12G0435' => 'fan', 'FAN12G2426' => 'fan', 'FAN14G1707' => 'fan', 'FAN14G4725' => 'fan', 'FAN15G2071' => 'fan', 'FAN17G3065' => 'fan', 'FAN19G1376' => 'fan', 'FAN20G0354' => 'fan', 'FAN20G2429' => 'fan', 'FAN20G2658' => 'fan', 'FAN24G2343' => 'fan', 'FAN27G2362' => 'fan', 'FAN28G1765' => 'fan', 'FvH4_1g16020' => 'fve', 'FvH4_2g04890' => 'fve', 'FvH4_2g22270' => 'fve', 'FvH4_4g02630' => 'fve', 'FvH4_4g02640' => 'fve', 'FvH4_6g02650' => 'fve', 'Glyma.02G140600' => 'gma', 'Glyma.03G159900' => 'gma', 'Glyma.05G234800' => 'gma', 'Glyma.07G269600' => 'gma', 'Glyma.08G042300' => 'gma', 'Glyma.10G033500' => 'gma', 'Glyma.10G185200' => 'gma', 'Glyma.17G004300' => 'gma', 'Glyma.19G161900' => 'gma', 'Glyma.20G205100' => 'gma', 'Glyma.20G205200' => 'gma', 'Gohir.A01G139101' => 'ghi', 'Gohir.A02G035600' => 'ghi', 'Gohir.A02G117901' => 'ghi', 'Gohir.A07G210100' => 'ghi', 'Gohir.A07G210200' => 'ghi', 'Gohir.A08G061100' => 'ghi', 'Gohir.A09G223000' => 'ghi', 'Gohir.A09G223100' => 'ghi', 'Gohir.A10G113900' => 'ghi', 'Gohir.A10G114000' => 'ghi', 'Gohir.D02G042300' => 'ghi', 'Gohir.D07G216100' => 'ghi', 'Gohir.D07G216200' => 'ghi', 'Gohir.D08G070400' => 'ghi', 'Gohir.D09G225000' => 'ghi', 'Gohir.D09G225100' => 'ghi', 'Gohir.D10G152300' => 'ghi', 'Gohir.D10G153200' => 'ghi', 'Gohir.D11G133701' => 'ghi', 'Gorai.004G074100' => 'gra', 'Gorai.005G046800' => 'gra', 'Gorai.006G246500' => 'gra', 'Gorai.006G246600' => 'gra', 'Gorai.007G142900' => 'gra', 'Gorai.011G171000' => 'gra', 'Gorai.011G171100' => 'gra', 'Gorai.013G104300' => 'gra', 'Gorai.013G104400' => 'gra', 'GSVIVG01000754001' => 'vvi', 'GSVIVG01000756001' => 'vvi', 'GSVIVG01010903001' => 'vvi', 'GSVIVG01017623001' => 'vvi', 'GSVIVG01018113001' => 'vvi', 'GSVIVG01018116001' => 'vvi', 'GSVIVG01018118001' => 'vvi', 'HanXRQChr03g0076211' => 'han', 'HanXRQChr03g0092431' => 'han', 'HanXRQChr03g0092441' => 'han', 'HanXRQChr03g0092591' => 'han', 'HanXRQChr03g0092671' => 'han', 'HanXRQChr03g0092681' => 'han', 'HanXRQChr03g0092691' => 'han', 'HanXRQChr03g0092701' => 'han', 'HanXRQChr03g0092721' => 'han', 'HanXRQChr03g0092731' => 'han', 'HanXRQChr04g0113681' => 'han', 'HanXRQChr10g0281371' => 'han', 'HanXRQChr11g0337141' => 'han', 'HanXRQChr13g0424521' => 'han', 'HanXRQChr13g0424531' => 'han', 'HanXRQChr13g0424541' => 'han', 'HanXRQChr16g0498221' => 'han', 'Haze_04377' => 'cav', 'Haze_11298' => 'cav', 'Haze_24547' => 'cav', 'Haze_24550' => 'cav', 'Haze_26587' => 'cav', 'Hma1.2p1_0650F.1_g195410' => 'hma', 'Hma1.2p1_0893F.1_g233470' => 'hma', 'HPP92_006508' => 'vpl', 'HPP92_024780' => 'vpl', 'Hund02688' => 'sun', 'Hund09380' => 'sun', 'Hund09381' => 'sun', 'Hund09832' => 'sun', 'Hund09833' => 'sun', 'Hund11351' => 'sun', 'Hund11513' => 'sun', 'Lalb_Chr06g0162591' => 'lal', 'Lalb_Chr06g0162601' => 'lal', 'Lalb_Chr06g0169321' => 'lal', 'Lalb_Chr09g0330951' => 'lal', 'Lalb_Chr16g0387631' => 'lal', 'Lalb_Chr21g0306241' => 'lal', 'Lalb_Chr25g0290051' => 'lal', 'Lalb_Chr25g0290061' => 'lal', 'Lalb_Chr25g0290071' => 'lal', 'Lj1g0003876' => 'lja', 'Lj1P1207T36' => 'lonja', 'Lj2C1156G12' => 'lonja', 'Lj3A793G39' => 'lonja', 'Lj3C580G2' => 'lonja', 'Lj3C780G2' => 'lonja', 'Lj3C780T4' => 'lonja', 'Lj3C793G9' => 'lonja', 'Lj4g0012960' => 'lja', 'Lj5g0021252' => 'lja', 'Lj5g0021484' => 'lja', 'Lj5g0024528' => 'lja', 'Lj6A399T12' => 'lonja', 'Lj6A656G65' => 'lonja', 'Lsat_1_v5_gn_3_125500' => 'lsa', 'Lsat_1_v5_gn_3_125540' => 'lsa', 'Lsat_1_v5_gn_5_72701' => 'lsa', 'Lsat_1_v5_gn_8_91560' => 'lsa', 'Lsat_1_v5_gn_9_9640' => 'lsa', 'Manes.01G200600' => 'mes', 'Manes.01G200700' => 'mes', 'Manes.03G168900' => 'mes', 'Manes.03G169000' => 'mes', 'Manes.05G085801' => 'mes', 'Manes.05G086200' => 'mes', 'Manes.15G036700' => 'mes', 'Manes.15G036900' => 'mes', 'Mapoly0004s0172' => 'mpo', 'Mapoly0023s0001' => 'mpo', 'Mapoly0142s0012' => 'mpo', 'MBI01_g32854_MAGBIO' => 'mbi', 'MBI11_g24427_MAGBIO' => 'mbi', 'MBI11_g47319_MAGBIO' => 'mbi', 'MCO01G433' => 'mco', 'MD00G1187800' => 'mdo', 'MD04G1226500' => 'mdo', 'MD05G1203900' => 'mdo', 'MD10G1191100' => 'mdo', 'MD12G1243500' => 'mdo', 'MD13G1207000' => 'mdo', 'MD13G1207100' => 'mdo', 'MD16G1208600' => 'mdo', 'Medtr1g050352' => 'mtr', 'Medtr1g070385' => 'mtr', 'Medtr1g070450' => 'mtr', 'Medtr1g075200' => 'mtr', 'Medtr1g075250' => 'mtr', 'Medtr1g075260' => 'mtr', 'Medtr1g475250' => 'mtr', 'Medtr4g075450' => 'mtr', 'Medtr7g096300' => 'mtr', 'Medtr8g105110' => 'mtr', 'MELO3C006470.2' => 'cme', 'MELO3C006471.2' => 'cme', 'MELO3C020772.2' => 'cme', 'MELO3C026780.2' => 'cme', 'MELO3C026781.2' => 'cme', 'Migut.D00390' => 'egut', 'Migut.G00435' => 'egut', 'Migut.G00436' => 'egut', 'Migut.G00718' => 'egut', 'MSTRG.21891' => 'ama', 'MSTRG.26910' => 'ama', 'MSTRG.4099' => 'ama', 'MSTRG.9925' => 'ama', 'Nitab4.5_0000165g0010' => 'nta', 'Nitab4.5_0000209g0180' => 'nta', 'Nitab4.5_0000244g0440' => 'nta', 'Nitab4.5_0000525g0220' => 'nta', 'Nitab4.5_0001597g0020' => 'nta', 'Nitab4.5_0001878g0040' => 'nta', 'Nitab4.5_0001878g0060' => 'nta', 'Nitab4.5_0002838g0100' => 'nta', 'Nitab4.5_0002838g0120' => 'nta', 'Nitab4.5_0004798g0030' => 'nta', 'Nitab4.5_0005420g0010' => 'nta', 'Nitab4.5_0005507g0010' => 'nta', 'Nitab4.5_0005574g0020' => 'nta', 'Nitab4.5_0005838g0010' => 'nta', 'Nitab4.5_0010580g0020' => 'nta', 'Nn1g02599' => 'nnu', 'Nn1g02608' => 'nnu', 'Nn3g17742' => 'nnu', 'Nn3g19534' => 'nnu', 'Nn3g19535' => 'nnu', 'Oeu008790.1' => 'oeu', 'Oeu008792.1' => 'oeu', 'Oeu032590.1' => 'oeu', 'Oeu035349.1' => 'oeu', 'Oeu049791.1' => 'oeu', 'Os01g0774500' => 'osa', 'Os03g0628800' => 'osa', 'Os03g0798600' => 'osa', 'Os05g0508800' => 'osa', 'Peaxi162Scf00036g02018' => 'pax', 'Peaxi162Scf00578g00032' => 'pax', 'Peaxi162Scf00578g00317' => 'pax', 'Peaxi162Scf00785g00114' => 'pax', 'Peaxi162Scf00813g00119' => 'pax', 'Peaxi162Scf00906g00227' => 'pax', 'PGR004G0875' => 'pgr', 'PGR004G2424' => 'pgr', 'PGR031G1239' => 'pgr', 'PGR031G2474' => 'pgr', 'PGR044G0423' => 'pgr', 'PGSC0003DMG400001128' => 'stu', 'PGSC0003DMG400007336' => 'stu', 'PGSC0003DMG400016318' => 'stu', 'PGSC0003DMG400016319' => 'stu', 'PGSC0003DMG400018074' => 'stu', 'Phvul.001G157700' => 'pvu', 'Phvul.002G148550' => 'pvu', 'Phvul.002G320200' => 'pvu', 'Phvul.003G089200' => 'pvu', 'Phvul.007G126000' => 'pvu', 'Phvul.007G126100' => 'pvu', 'Phvul.007G178000' => 'pvu', 'Phvul.007G178200' => 'pvu', 'Potri.002G043000' => 'ptr', 'Potri.002G043200' => 'ptr', 'Potri.003G123750' => 'ptr', 'Potri.005G055401' => 'ptr', 'Potri.005G219700' => 'ptr', 'Potri.005G220000' => 'ptr', 'Potri.008G161901' => 'ptr', 'Potri.008G162000' => 'ptr', 'Potri.008G162400' => 'ptr', 'Potri.010G076900' => 'ptr', 'Pp3c12_9180' => 'ppa', 'Pp3c13_19770' => 'ppa', 'Pp3c14_22950' => 'ppa', 'Pp3c16_12160' => 'ppa', 'Pp3c27_7820' => 'ppa', 'Pp3c2_3490' => 'ppa', 'Pp3c3_23700' => 'ppa', 'Pp3c3_36520' => 'ppa', 'Pp3c4_15250' => 'ppa', 'PRCOL_00007002' => 'pco', 'Prupe.1G030600' => 'ppe', 'Prupe.1G030700' => 'ppe', 'Prupe.6G345200' => 'ppe', 'Prupe.8G230300' => 'ppe', 'Prupe.8G230500' => 'ppe', 'Psat3g059600' => 'psa', 'Psat5g200920' => 'psa', 'Psat6g056440' => 'psa', 'Psat6g057360' => 'psa', 'Psat6g134120' => 'psa', 'Psat6g134160' => 'psa', 'Psat7g008640' => 'psa', 'Psat7g185240' => 'psa', 'PSO017G1330' => 'pso', 'PSO063G6097' => 'pso', 'PSO170G0835' => 'pso', 'PSO170G2499' => 'pso', 'PSO210G5058' => 'pso', 'PSO210G6154' => 'pso', 'PSO585G0031' => 'pso', 'PSO832G0264' => 'pso', 'PSO832G4288' => 'pso', 'QL03p027355' => 'qlo', 'QL03p027430' => 'qlo', 'QL04p081380' => 'qlo', 'QL06p015642' => 'qlo', 'QL06p015650' => 'qlo', 'QL06p015686' => 'qlo', 'QL12p042927' => 'qlo', 'QL93p1863_0035' => 'qlo', 'RcHm_v2.0_Chr3g0450581' => 'rch', 'RcHm_v2.0_Chr4g0390371' => 'rch', 'RcHm_v2.0_Chr4g0390381' => 'rch', 'RcHm_v2.0_Chr4g0390491' => 'rch', 'RcHm_v2.0_Chr4g0390501' => 'rch', 'RcHm_v2.0_Chr6g0289231' => 'rch', 'Rhsim04G0190400' => 'rsi', 'Rhsim04G0190500' => 'rsi', 'Rhsim04G0190600' => 'rsi', 'Rhsim13G0031400' => 'rsi', 'Rhsim13G0165600' => 'rsi', 'RhsimUnG0114600' => 'rsi', 'RhsimUnG0114700' => 'rsi', 'Sabra02G0034800' => 'sbr', 'Sabra02G0035100' => 'sbr', 'Sabra05G0168600' => 'sbr', 'Sabra05G0168800' => 'sbr', 'Sabra08G0123700' => 'sbr', 'Sabra10G0031900' => 'sbr', 'Sabra13G0039000' => 'sbr', 'SalBow2G0782' => 'sbo', 'SalBow2G1403' => 'sbo', 'SalBow4G0074' => 'sbo', 'SalBow4G2635' => 'sbo', 'SalBow5G3010' => 'sbo', 'Sc05g0000870' => 'sci', 'Sc05g0000890' => 'sci', 'Sc13g0005000' => 'sci', 'Sc13g0005030' => 'sci', 'Sc19g0003790' => 'sci', 'Sc19g0003800' => 'sci', 'Sed0003467' => 'sed', 'Sed0009355' => 'sed', 'Sed0009894' => 'sed', 'Sed0011972' => 'sed', 'Sed0021483' => 'sed', 'Sed0021750' => 'sed', 'Sed0026279' => 'sed', 'SEGI_05312' => 'sgi', 'SEGI_10112' => 'sgi', 'SEGI_15835' => 'sgi', 'SEGI_30386' => 'sgi', 'SEGI_34122' => 'sgi', 'SEGI_35063' => 'sgi', 'SGA_v2.0_scaffold101G29794' => 'sas', 'SGA_v2.0_scaffold1G00573' => 'sas', 'SGA_v2.0_scaffold79G25637' => 'sas', 'SGA_v2.0_scaffold88G27283' => 'sas', 'SGA_v2.0_scaffold88G27285' => 'sas', 'SGA_v2.0_scaffold88G27331' => 'sas', 'SHI09937' => 'shi', 'SMO119G0302' => 'smo', 'SMO137G0231' => 'smo', 'SMO367G1151' => 'smo', 'Solyc02g082000.3' => 'sly', 'Solyc06g031670.3' => 'sly', 'Solyc06g053810.3' => 'sly', 'Solyc07g025457.1' => 'sly', 'Solyc08g059740.1' => 'sly', 'Solyc08g059750.3' => 'sly', 'Solyc09g083370.3' => 'sly', 'Solyc12g038950.3' => 'sly', 'Sopen02g026630' => 'spe', 'Sopen06g018930' => 'spe', 'Sopen06g018940' => 'spe', 'Sopen08g009460' => 'spe', 'Sopen09g032290' => 'spe', 'Sp1g03080' => 'spa', 'Sp1g03090' => 'spa', 'Sp1g05480' => 'spa', 'Sp2g07860' => 'spa', 'Sp2g08430' => 'spa', 'Sp2g08440' => 'spa', 'Sp2g26200' => 'spa', 'Sp4g13170' => 'spa', 'Sp6g33840' => 'spa', 'SpUn1204_0010' => 'spa', 'TAR365G0908' => 'tar', 'TAR381G1270' => 'tar', 'TAR381G1651' => 'tar', 'TAR625G1131' => 'tar', 'TAR633G0962' => 'tar', 'TAR633G1729' => 'tar', 'TAR633G1864' => 'tar', 'TAR636G0221' => 'tar', 'TAR636G0314' => 'tar', 'TAR636G3202' => 'tar', 'THA.LOC104800805' => 'tha', 'THA.LOC104801096' => 'tha', 'THA.LOC104801555' => 'tha', 'THA.LOC104808491' => 'tha', 'THA.LOC104808595' => 'tha', 'THA.LOC104815985' => 'tha', 'THA.LOC104822250' => 'tha', 'THA.LOC104826071' => 'tha', 'Thecc.01G265200' => 'tca', 'Thecc.01G265300' => 'tca', 'Thecc.01G265700' => 'tca', 'Thecc.03G109100' => 'tca', 'Thecc.04G245900' => 'tca', 'Thecc.04G246000' => 'tca', 'Thhalv10003334m.g' => 'esa', 'Thhalv10005508m.g' => 'esa', 'Thhalv10005643m.g' => 'esa', 'Thhalv10007316m.g' => 'esa', 'Thhalv10009006m.g' => 'esa', 'Thhalv10009309m.g' => 'esa', 'Thhalv10014917m.g' => 'esa', 'Thhalv10014919m.g' => 'esa', 'Thhalv10015393m.g' => 'esa', 'Thhalv10016515m.g' => 'esa', 'Thhalv10029242m.g' => 'esa', 'TPR.G16654' => 'tpr', 'TPR.G20589' => 'tpr', 'TPR.G23029' => 'tpr', 'TPR.G27731' => 'tpr', 'TPR.G28889' => 'tpr', 'TPR.G28899' => 'tpr', 'TPR.G30846' => 'tpr', 'TPR.G5452' => 'tpr', 'TPR.G5713' => 'tpr', 'TPR.G9046' => 'tpr', 'TPR.G9061' => 'tpr', 'TWI09G1075' => 'twi', 'TWI12G0806' => 'twi', 'TWI18G0108' => 'twi', 'TWI53G1361' => 'twi', 'TWI73G0185' => 'twi', 'TWI73G0427' => 'twi', 'unitig_37.g12001' => 'ugi', 'unitig_747.g21660' => 'ugi', 'unitig_748.g7232' => 'ugi', 'unitig_748.g7315' => 'ugi', 'unitig_85.g27262' => 'ugi', 'unitig_92.g28220' => 'ugi', 'vmacro02632' => 'vma', 'vmacro08410' => 'vma', 'vmacro08411' => 'vma', 'vmacro15407' => 'vma', 'VMungo0251G3619' => 'vmu', 'VMungo0720G1204' => 'vmu', 'VMungo0720G1918' => 'vmu', 'VMungo0720G2387' => 'vmu', 'VMungo0720G2961' => 'vmu', 'VMungo1215G2154' => 'vmu', 'VMungo1383G2411' => 'vmu', 'Zm00001eb051130' => 'zma', 'Zm00001eb116830' => 'zma', 'Zm00001eb116850' => 'zma', 'Zm00001eb151740' => 'zma', 'Zm00001eb292360' => 'zma', 'Zm00001eb301640' => 'zma' ) $gf_id = 'HOM05D000856' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000856' ) $data_identifier = 'HOM05D000856' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 13, 'ath' => (int) 10, 'atr' => (int) 1, 'acertr' => (int) 8, 'cqu' => (int) 6, 'bca' => (int) 21, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 11, 'car' => (int) 9, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 8, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 5, 'fan' => (int) 16, 'fve' => (int) 6, 'gma' => (int) 11, 'ghi' => (int) 19, 'gra' => (int) 9, 'vvi' => (int) 7, 'han' => (int) 17, 'cav' => (int) 5, 'hma' => (int) 2, 'vpl' => (int) 2, 'sun' => (int) 7, 'lal' => (int) 9, 'lja' => (int) 5, 'lonja' => (int) 9, 'lsa' => (int) 5, 'mes' => (int) 8, 'mpo' => (int) 3, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 10, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 15, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 9, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 9, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 6, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 5, 'spa' => (int) 10, 'tar' => (int) 10, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 11, 'tpr' => (int) 11, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 4, 'vmu' => (int) 7, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb301640' $species_info = array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ) $local_species = 'smo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000856', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p00010' => 'bna', 'A03p04160' => 'bna', 'A03p17160' => 'bna', 'A04p23370' => 'bna', 'A05p14860' => 'bna', 'A08p37020' => 'bna', 'A09p08050' => 'bna', 'A09p66800' => 'bna', 'A09p67940' => 'bna', 'A10p02680' => 'bna', 'A10p05320' => 'bna', 'Aa31LG1G20560' => 'aar', 'Aa31LG1G20610' => 'aar', 'Aa31LG1G7810' => 'aar', 'Aa31LG5G3590' => 'aar', 'Aa31LG5G6140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3819' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4683' => 'aag', 'Actinidia04480' => 'ach', 'Actinidia05466' => 'ach', 'Actinidia08445' => 'ach', 'Actinidia21170' => 'ach', 'Actinidia24812' => 'ach', 'Actinidia24951' => 'ach', 'Actinidia40088' => 'ach', 'Ah.02g111660' => 'amhyb', 'Ah.11g048900' => 'amhyb', 'Ah.11g049910' => 'amhyb', 'AL1G13870' => 'aly', 'AL1G13880' => 'aly', 'AL1G16760' => 'aly', 'AL390U10020' => 'aly', 'AL4G25520' => 'aly', 'AL6G19890' => 'aly', 'AL6G19900' => 'aly', 'AL6G19910' => 'aly', 'AL8G40100' => 'aly', 'Aqoxy2G03562' => 'aox', 'Aqoxy5G00316' => 'aox', 'Aqoxy5G00926' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1628KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1H403S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2FU6SJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.882I6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8YRY2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YN1SN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AF70II' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZA8L1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F916KL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHRD8H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KTZ8QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S22EMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8M29T' => 'arhy', 'AT1G04270' => 'ath', 'AT1G04280' => 'ath', 'AT1G06750' => 'ath', 'AT1G33850' => 'ath', 'AT2G30630' => 'ath', 'AT5G09490' => 'ath', 'AT5G09500' => 'ath', 'AT5G09510' => 'ath', 'AT5G43640' => 'ath', 'AT5G63070' => 'ath', 'ATR0605G315' => 'atr', 'Atru.chr11.175' => 'acertr', 'Atru.chr11.653' => 'acertr', 'Atru.chr3.1616' => 'acertr', 'Atru.chr4.2230' => 'acertr', 'Atru.chr4.2232' => 'acertr', 'Atru.chr5.1598' => 'acertr', 'Atru.chr5.1600' => 'acertr', 'Atru.chr5.2188' => 'acertr', 'AUR62008326' => 'cqu', 'AUR62011922' => 'cqu', 'AUR62011924' => 'cqu', 'AUR62021771' => 'cqu', 'AUR62032237' => 'cqu', 'AUR62032240' => 'cqu', 'BcaB01g05572' => 'bca', 'BcaB02g10337' => 'bca', 'BcaB04g19944' => 'bca', 'BcaB05g21548' => 'bca', 'BcaB05g21549' => 'bca', 'BcaB05g23227' => 'bca', 'BcaB06g26256' => 'bca', 'BcaB06g26257' => 'bca', 'BcaB06g28379' => 'bca', 'BcaC02g11159' => 'bca', 'BcaC03g13258' => 'bca', 'BcaC03g13259' => 'bca', 'BcaC05g24456' => 'bca', 'BcaC05g24457' => 'bca', 'BcaC07g36922' => 'bca', 'BcaC07g36923' => 'bca', 'BcaC07g42050' => 'bca', 'BcaC07g42176' => 'bca', 'BcaC07g42195' => 'bca', 'BcaC07g42196' => 'bca', 'BcaNung06674' => 'bca', 'BolC2t06351H' => 'bol', 'BolC2t06352H' => 'bol', 'BolC3t12993H' => 'bol', 'BolC4t23525H' => 'bol', 'BolC4t27475H' => 'bol', 'BolC5t29025H' => 'bol', 'BolC5t29026H' => 'bol', 'BolC8t46898H' => 'bol', 'BolC8t46899H' => 'bol', 'BolC8t52630H' => 'bol', 'BolC8t52765H' => 'bol', 'BolC9t53824H' => 'bol', 'BraA03t09760Z' => 'bra', 'BraA03t10990Z' => 'bra', 'BraA05t20413Z' => 'bra', 'BraA08t35602Z' => 'bra', 'BraA09t36458Z' => 'bra', 'BraA09t42018Z' => 'bra', 'BraA09t42129Z' => 'bra', 'BraA10t42536Z' => 'bra', 'BraA10t42537Z' => 'bra', 'C01p10690' => 'bna', 'C02p03890' => 'bna', 'C02p03900' => 'bna', 'C03p04620' => 'bna', 'C04p19870' => 'bna', 'C04p59670' => 'bna', 'C05p02460' => 'bna', 'C05p02470' => 'bna', 'C08p00980' => 'bna', 'C08p00990' => 'bna', 'C08p51030' => 'bna', 'C08p52360' => 'bna', 'C09p09120' => 'bna', 'CAN.G19.15' => 'can', 'CAN.G251.10' => 'can', 'CAN.G251.9' => 'can', 'CAN.G398.24' => 'can', 'CAN.G410.32' => 'can', 'CAN.G881.2' => 'can', 'CANSAT01G3025' => 'cansat', 'CANSAT78G1211' => 'cansat', 'CANSAT78G1218' => 'cansat', 'CANSAT78G1521' => 'cansat', 'CANSAT78G1670' => 'cansat', 'CARHR003600' => 'chi', 'CARHR003610' => 'chi', 'CARHR006290' => 'chi', 'CARHR006430' => 'chi', 'CARHR124110' => 'chi', 'CARHR203870' => 'chi', 'CARHR203880' => 'chi', 'CARHR203890' => 'chi', 'CARHR276880' => 'chi', 'Carub.0001s0346' => 'cru', 'Carub.0001s0347' => 'cru', 'Carub.0001s0607' => 'cru', 'Carub.0003s2768' => 'cru', 'Carub.0003s2769' => 'cru', 'Carub.0004s1178' => 'cru', 'Carub.0006s0806' => 'cru', 'Carub.0006s0807' => 'cru', 'Carub.0006s0808' => 'cru', 'Carub.0008s0501' => 'cru', 'Carub.0008s2379' => 'cru', 'Ca_08655_v3' => 'car', 'Ca_08922_v3' => 'car', 'Ca_08923_v3' => 'car', 'Ca_09119_v3' => 'car', 'Ca_09703_v3' => 'car', 'Ca_09705_v3' => 'car', 'Ca_09835_v3' => 'car', 'Ca_26403_v3' => 'car', 'Ca_30719_v3' => 'car', 'CBR_g17958' => 'cbr', 'CBR_g40516' => 'cbr', 'Cc00_g05350' => 'ccan', 'Cc01_g18690' => 'ccan', 'Cc03_g04830' => 'ccan', 'Cc03_g04850' => 'ccan', 'CDE02G4469' => 'cde', 'CDE06G0883' => 'cde', 'CDE06G1295' => 'cde', 'CDE06G1390' => 'cde', 'CDE07G0584' => 'cde', 'CDE07G1084' => 'cde', 'CDE08G1259' => 'cde', 'Cfa002341' => 'cfa', 'Cfa024337' => 'cfa', 'Ciclev10004749m.g' => 'ccl', 'Ciclev10006127m.g' => 'ccl', 'Ciclev10019720m.g' => 'ccl', 'Ciclev10022652m.g' => 'ccl', 'CiPaw.01G190400' => 'cil', 'CiPaw.01G190500' => 'cil', 'CiPaw.02G116400' => 'cil', 'CiPaw.02G116500' => 'cil', 'CiPaw.04G183000' => 'cil', 'CiPaw.04G183300' => 'cil', 'ClCG05G004610' => 'cla', 'ClCG05G004620' => 'cla', 'ClCG06G006730' => 'cla', 'ClCG06G006740' => 'cla', 'ClCG11G003690' => 'cla', 'COL.COLO4_08276' => 'col', 'COL.COLO4_08277' => 'col', 'COL.COLO4_15787' => 'col', 'COL.COLO4_15789' => 'col', 'Cpa.g.c44815' => 'cpa', 'Cpa.g.sc52.144' => 'cpa', 'Cpa.g.sc58.46' => 'cpa', 'Cpa.g.sc58.47' => 'cpa', 'Cre08.g360900' => 'cre', 'CsaV3_2G013030' => 'csa', 'CsaV3_2G013050' => 'csa', 'CsaV3_2G015620' => 'csa', 'CsaV3_3G012590' => 'csa', 'CsaV3_3G012600' => 'csa', 'CSS0001641' => 'camsi', 'CSS0008310' => 'camsi', 'CSS0013011' => 'camsi', 'CSS0017147' => 'camsi', 'CSS0022970' => 'camsi', 'CSS0025655' => 'camsi', 'CSS0028665' => 'camsi', 'CSS0029117' => 'camsi', 'CSS0032024' => 'camsi', 'CSS0039681' => 'camsi', 'CSS0046516' => 'camsi', 'CSS0050307' => 'camsi', 'DCAR_005871' => 'dca', 'DCAR_007342' => 'dca', 'DCAR_024228' => 'dca', 'DCAR_027277' => 'dca', 'DCAR_030718' => 'dca', 'Dinv20287' => 'din', 'Dinv22461' => 'din', 'Dinv22464' => 'din', 'Dinv29912' => 'din', 'Dinv29913' => 'din', 'Dinv34580' => 'din', 'Dinv34582' => 'din', 'Dinv44632' => 'din', 'Duzib052G0266' => 'dzi', 'Duzib133G0907' => 'dzi', 'Duzib133G1034' => 'dzi', 'Duzib138G0207' => 'dzi', 'Duzib138G0491' => 'dzi', 'Duzib151G0812' => 'dzi', 'Duzib151G1166' => 'dzi', 'Duzib168G0192' => 'dzi', 'Duzib211G0077' => 'dzi', 'Duzib212G0429' => 'dzi', 'Duzib212G0472' => 'dzi', 'ECA233G2617' => 'eca', 'ECA236G4188' => 'eca', 'ECA240G0936' => 'eca', 'ECA240G1129' => 'eca', 'ECA247G0623' => 'eca', 'EL10Ac5g10451' => 'bvu', 'EL10Ac5g10453' => 'bvu', 'EL10Ac5g10894' => 'bvu', 'Eucgr.H00192' => 'egr', 'Eucgr.H00193' => 'egr', 'Eucgr.H00194' => 'egr', 'Eucgr.J01562' => 'egr', 'Eucgr.K03301' => 'egr', 'FAN02G0632' => 'fan', 'FAN05G5378' => 'fan', 'FAN09G3247' => 'fan', 'FAN12G0435' => 'fan', 'FAN12G2426' => 'fan', 'FAN14G1707' => 'fan', 'FAN14G4725' => 'fan', 'FAN15G2071' => 'fan', 'FAN17G3065' => 'fan', 'FAN19G1376' => 'fan', 'FAN20G0354' => 'fan', 'FAN20G2429' => 'fan', 'FAN20G2658' => 'fan', 'FAN24G2343' => 'fan', 'FAN27G2362' => 'fan', 'FAN28G1765' => 'fan', 'FvH4_1g16020' => 'fve', 'FvH4_2g04890' => 'fve', 'FvH4_2g22270' => 'fve', 'FvH4_4g02630' => 'fve', 'FvH4_4g02640' => 'fve', 'FvH4_6g02650' => 'fve', 'Glyma.02G140600' => 'gma', 'Glyma.03G159900' => 'gma', 'Glyma.05G234800' => 'gma', 'Glyma.07G269600' => 'gma', 'Glyma.08G042300' => 'gma', 'Glyma.10G033500' => 'gma', 'Glyma.10G185200' => 'gma', 'Glyma.17G004300' => 'gma', 'Glyma.19G161900' => 'gma', 'Glyma.20G205100' => 'gma', 'Glyma.20G205200' => 'gma', 'Gohir.A01G139101' => 'ghi', 'Gohir.A02G035600' => 'ghi', 'Gohir.A02G117901' => 'ghi', 'Gohir.A07G210100' => 'ghi', 'Gohir.A07G210200' => 'ghi', 'Gohir.A08G061100' => 'ghi', 'Gohir.A09G223000' => 'ghi', 'Gohir.A09G223100' => 'ghi', 'Gohir.A10G113900' => 'ghi', 'Gohir.A10G114000' => 'ghi', 'Gohir.D02G042300' => 'ghi', 'Gohir.D07G216100' => 'ghi', 'Gohir.D07G216200' => 'ghi', 'Gohir.D08G070400' => 'ghi', 'Gohir.D09G225000' => 'ghi', 'Gohir.D09G225100' => 'ghi', 'Gohir.D10G152300' => 'ghi', 'Gohir.D10G153200' => 'ghi', 'Gohir.D11G133701' => 'ghi', 'Gorai.004G074100' => 'gra', 'Gorai.005G046800' => 'gra', 'Gorai.006G246500' => 'gra', 'Gorai.006G246600' => 'gra', 'Gorai.007G142900' => 'gra', 'Gorai.011G171000' => 'gra', 'Gorai.011G171100' => 'gra', 'Gorai.013G104300' => 'gra', 'Gorai.013G104400' => 'gra', 'GSVIVG01000754001' => 'vvi', 'GSVIVG01000756001' => 'vvi', 'GSVIVG01010903001' => 'vvi', 'GSVIVG01017623001' => 'vvi', 'GSVIVG01018113001' => 'vvi', 'GSVIVG01018116001' => 'vvi', 'GSVIVG01018118001' => 'vvi', 'HanXRQChr03g0076211' => 'han', 'HanXRQChr03g0092431' => 'han', 'HanXRQChr03g0092441' => 'han', 'HanXRQChr03g0092591' => 'han', 'HanXRQChr03g0092671' => 'han', 'HanXRQChr03g0092681' => 'han', 'HanXRQChr03g0092691' => 'han', 'HanXRQChr03g0092701' => 'han', 'HanXRQChr03g0092721' => 'han', 'HanXRQChr03g0092731' => 'han', 'HanXRQChr04g0113681' => 'han', 'HanXRQChr10g0281371' => 'han', 'HanXRQChr11g0337141' => 'han', 'HanXRQChr13g0424521' => 'han', 'HanXRQChr13g0424531' => 'han', 'HanXRQChr13g0424541' => 'han', 'HanXRQChr16g0498221' => 'han', 'Haze_04377' => 'cav', 'Haze_11298' => 'cav', 'Haze_24547' => 'cav', 'Haze_24550' => 'cav', 'Haze_26587' => 'cav', 'Hma1.2p1_0650F.1_g195410' => 'hma', 'Hma1.2p1_0893F.1_g233470' => 'hma', 'HPP92_006508' => 'vpl', 'HPP92_024780' => 'vpl', 'Hund02688' => 'sun', 'Hund09380' => 'sun', 'Hund09381' => 'sun', 'Hund09832' => 'sun', 'Hund09833' => 'sun', 'Hund11351' => 'sun', 'Hund11513' => 'sun', 'Lalb_Chr06g0162591' => 'lal', 'Lalb_Chr06g0162601' => 'lal', 'Lalb_Chr06g0169321' => 'lal', 'Lalb_Chr09g0330951' => 'lal', 'Lalb_Chr16g0387631' => 'lal', 'Lalb_Chr21g0306241' => 'lal', 'Lalb_Chr25g0290051' => 'lal', 'Lalb_Chr25g0290061' => 'lal', 'Lalb_Chr25g0290071' => 'lal', 'Lj1g0003876' => 'lja', 'Lj1P1207T36' => 'lonja', 'Lj2C1156G12' => 'lonja', 'Lj3A793G39' => 'lonja', 'Lj3C580G2' => 'lonja', 'Lj3C780G2' => 'lonja', 'Lj3C780T4' => 'lonja', 'Lj3C793G9' => 'lonja', 'Lj4g0012960' => 'lja', 'Lj5g0021252' => 'lja', 'Lj5g0021484' => 'lja', 'Lj5g0024528' => 'lja', 'Lj6A399T12' => 'lonja', 'Lj6A656G65' => 'lonja', 'Lsat_1_v5_gn_3_125500' => 'lsa', 'Lsat_1_v5_gn_3_125540' => 'lsa', 'Lsat_1_v5_gn_5_72701' => 'lsa', 'Lsat_1_v5_gn_8_91560' => 'lsa', 'Lsat_1_v5_gn_9_9640' => 'lsa', 'Manes.01G200600' => 'mes', 'Manes.01G200700' => 'mes', 'Manes.03G168900' => 'mes', 'Manes.03G169000' => 'mes', 'Manes.05G085801' => 'mes', 'Manes.05G086200' => 'mes', 'Manes.15G036700' => 'mes', 'Manes.15G036900' => 'mes', 'Mapoly0004s0172' => 'mpo', 'Mapoly0023s0001' => 'mpo', 'Mapoly0142s0012' => 'mpo', 'MBI01_g32854_MAGBIO' => 'mbi', 'MBI11_g24427_MAGBIO' => 'mbi', 'MBI11_g47319_MAGBIO' => 'mbi', 'MCO01G433' => 'mco', 'MD00G1187800' => 'mdo', 'MD04G1226500' => 'mdo', 'MD05G1203900' => 'mdo', 'MD10G1191100' => 'mdo', 'MD12G1243500' => 'mdo', 'MD13G1207000' => 'mdo', 'MD13G1207100' => 'mdo', 'MD16G1208600' => 'mdo', 'Medtr1g050352' => 'mtr', 'Medtr1g070385' => 'mtr', 'Medtr1g070450' => 'mtr', 'Medtr1g075200' => 'mtr', 'Medtr1g075250' => 'mtr', 'Medtr1g075260' => 'mtr', 'Medtr1g475250' => 'mtr', 'Medtr4g075450' => 'mtr', 'Medtr7g096300' => 'mtr', 'Medtr8g105110' => 'mtr', 'MELO3C006470.2' => 'cme', 'MELO3C006471.2' => 'cme', 'MELO3C020772.2' => 'cme', 'MELO3C026780.2' => 'cme', 'MELO3C026781.2' => 'cme', 'Migut.D00390' => 'egut', 'Migut.G00435' => 'egut', 'Migut.G00436' => 'egut', 'Migut.G00718' => 'egut', 'MSTRG.21891' => 'ama', 'MSTRG.26910' => 'ama', 'MSTRG.4099' => 'ama', 'MSTRG.9925' => 'ama', 'Nitab4.5_0000165g0010' => 'nta', 'Nitab4.5_0000209g0180' => 'nta', 'Nitab4.5_0000244g0440' => 'nta', 'Nitab4.5_0000525g0220' => 'nta', 'Nitab4.5_0001597g0020' => 'nta', 'Nitab4.5_0001878g0040' => 'nta', 'Nitab4.5_0001878g0060' => 'nta', 'Nitab4.5_0002838g0100' => 'nta', 'Nitab4.5_0002838g0120' => 'nta', 'Nitab4.5_0004798g0030' => 'nta', 'Nitab4.5_0005420g0010' => 'nta', 'Nitab4.5_0005507g0010' => 'nta', 'Nitab4.5_0005574g0020' => 'nta', 'Nitab4.5_0005838g0010' => 'nta', 'Nitab4.5_0010580g0020' => 'nta', 'Nn1g02599' => 'nnu', 'Nn1g02608' => 'nnu', 'Nn3g17742' => 'nnu', 'Nn3g19534' => 'nnu', 'Nn3g19535' => 'nnu', 'Oeu008790.1' => 'oeu', 'Oeu008792.1' => 'oeu', 'Oeu032590.1' => 'oeu', 'Oeu035349.1' => 'oeu', 'Oeu049791.1' => 'oeu', 'Os01g0774500' => 'osa', 'Os03g0628800' => 'osa', 'Os03g0798600' => 'osa', 'Os05g0508800' => 'osa', 'Peaxi162Scf00036g02018' => 'pax', 'Peaxi162Scf00578g00032' => 'pax', 'Peaxi162Scf00578g00317' => 'pax', 'Peaxi162Scf00785g00114' => 'pax', 'Peaxi162Scf00813g00119' => 'pax', 'Peaxi162Scf00906g00227' => 'pax', 'PGR004G0875' => 'pgr', 'PGR004G2424' => 'pgr', 'PGR031G1239' => 'pgr', 'PGR031G2474' => 'pgr', 'PGR044G0423' => 'pgr', 'PGSC0003DMG400001128' => 'stu', 'PGSC0003DMG400007336' => 'stu', 'PGSC0003DMG400016318' => 'stu', 'PGSC0003DMG400016319' => 'stu', 'PGSC0003DMG400018074' => 'stu', 'Phvul.001G157700' => 'pvu', 'Phvul.002G148550' => 'pvu', 'Phvul.002G320200' => 'pvu', 'Phvul.003G089200' => 'pvu', 'Phvul.007G126000' => 'pvu', 'Phvul.007G126100' => 'pvu', 'Phvul.007G178000' => 'pvu', 'Phvul.007G178200' => 'pvu', 'Potri.002G043000' => 'ptr', 'Potri.002G043200' => 'ptr', 'Potri.003G123750' => 'ptr', 'Potri.005G055401' => 'ptr', 'Potri.005G219700' => 'ptr', 'Potri.005G220000' => 'ptr', 'Potri.008G161901' => 'ptr', 'Potri.008G162000' => 'ptr', 'Potri.008G162400' => 'ptr', 'Potri.010G076900' => 'ptr', 'Pp3c12_9180' => 'ppa', 'Pp3c13_19770' => 'ppa', 'Pp3c14_22950' => 'ppa', 'Pp3c16_12160' => 'ppa', 'Pp3c27_7820' => 'ppa', 'Pp3c2_3490' => 'ppa', 'Pp3c3_23700' => 'ppa', 'Pp3c3_36520' => 'ppa', 'Pp3c4_15250' => 'ppa', 'PRCOL_00007002' => 'pco', 'Prupe.1G030600' => 'ppe', 'Prupe.1G030700' => 'ppe', 'Prupe.6G345200' => 'ppe', 'Prupe.8G230300' => 'ppe', 'Prupe.8G230500' => 'ppe', 'Psat3g059600' => 'psa', 'Psat5g200920' => 'psa', 'Psat6g056440' => 'psa', 'Psat6g057360' => 'psa', 'Psat6g134120' => 'psa', 'Psat6g134160' => 'psa', 'Psat7g008640' => 'psa', 'Psat7g185240' => 'psa', 'PSO017G1330' => 'pso', 'PSO063G6097' => 'pso', 'PSO170G0835' => 'pso', 'PSO170G2499' => 'pso', 'PSO210G5058' => 'pso', 'PSO210G6154' => 'pso', 'PSO585G0031' => 'pso', 'PSO832G0264' => 'pso', 'PSO832G4288' => 'pso', 'QL03p027355' => 'qlo', 'QL03p027430' => 'qlo', 'QL04p081380' => 'qlo', 'QL06p015642' => 'qlo', 'QL06p015650' => 'qlo', 'QL06p015686' => 'qlo', 'QL12p042927' => 'qlo', 'QL93p1863_0035' => 'qlo', 'RcHm_v2.0_Chr3g0450581' => 'rch', 'RcHm_v2.0_Chr4g0390371' => 'rch', 'RcHm_v2.0_Chr4g0390381' => 'rch', 'RcHm_v2.0_Chr4g0390491' => 'rch', 'RcHm_v2.0_Chr4g0390501' => 'rch', 'RcHm_v2.0_Chr6g0289231' => 'rch', 'Rhsim04G0190400' => 'rsi', 'Rhsim04G0190500' => 'rsi', 'Rhsim04G0190600' => 'rsi', 'Rhsim13G0031400' => 'rsi', 'Rhsim13G0165600' => 'rsi', 'RhsimUnG0114600' => 'rsi', 'RhsimUnG0114700' => 'rsi', 'Sabra02G0034800' => 'sbr', 'Sabra02G0035100' => 'sbr', 'Sabra05G0168600' => 'sbr', 'Sabra05G0168800' => 'sbr', 'Sabra08G0123700' => 'sbr', 'Sabra10G0031900' => 'sbr', 'Sabra13G0039000' => 'sbr', 'SalBow2G0782' => 'sbo', 'SalBow2G1403' => 'sbo', 'SalBow4G0074' => 'sbo', 'SalBow4G2635' => 'sbo', 'SalBow5G3010' => 'sbo', 'Sc05g0000870' => 'sci', 'Sc05g0000890' => 'sci', 'Sc13g0005000' => 'sci', 'Sc13g0005030' => 'sci', 'Sc19g0003790' => 'sci', 'Sc19g0003800' => 'sci', 'Sed0003467' => 'sed', 'Sed0009355' => 'sed', 'Sed0009894' => 'sed', 'Sed0011972' => 'sed', 'Sed0021483' => 'sed', 'Sed0021750' => 'sed', 'Sed0026279' => 'sed', 'SEGI_05312' => 'sgi', 'SEGI_10112' => 'sgi', 'SEGI_15835' => 'sgi', 'SEGI_30386' => 'sgi', 'SEGI_34122' => 'sgi', 'SEGI_35063' => 'sgi', 'SGA_v2.0_scaffold101G29794' => 'sas', 'SGA_v2.0_scaffold1G00573' => 'sas', 'SGA_v2.0_scaffold79G25637' => 'sas', 'SGA_v2.0_scaffold88G27283' => 'sas', 'SGA_v2.0_scaffold88G27285' => 'sas', 'SGA_v2.0_scaffold88G27331' => 'sas', 'SHI09937' => 'shi', 'SMO119G0302' => 'smo', 'SMO137G0231' => 'smo', 'SMO367G1151' => 'smo', 'Solyc02g082000.3' => 'sly', 'Solyc06g031670.3' => 'sly', 'Solyc06g053810.3' => 'sly', 'Solyc07g025457.1' => 'sly', 'Solyc08g059740.1' => 'sly', 'Solyc08g059750.3' => 'sly', 'Solyc09g083370.3' => 'sly', 'Solyc12g038950.3' => 'sly', 'Sopen02g026630' => 'spe', 'Sopen06g018930' => 'spe', 'Sopen06g018940' => 'spe', 'Sopen08g009460' => 'spe', 'Sopen09g032290' => 'spe', 'Sp1g03080' => 'spa', 'Sp1g03090' => 'spa', 'Sp1g05480' => 'spa', 'Sp2g07860' => 'spa', 'Sp2g08430' => 'spa', 'Sp2g08440' => 'spa', 'Sp2g26200' => 'spa', 'Sp4g13170' => 'spa', 'Sp6g33840' => 'spa', 'SpUn1204_0010' => 'spa', 'TAR365G0908' => 'tar', 'TAR381G1270' => 'tar', 'TAR381G1651' => 'tar', 'TAR625G1131' => 'tar', 'TAR633G0962' => 'tar', 'TAR633G1729' => 'tar', 'TAR633G1864' => 'tar', 'TAR636G0221' => 'tar', 'TAR636G0314' => 'tar', 'TAR636G3202' => 'tar', 'THA.LOC104800805' => 'tha', 'THA.LOC104801096' => 'tha', 'THA.LOC104801555' => 'tha', 'THA.LOC104808491' => 'tha', 'THA.LOC104808595' => 'tha', 'THA.LOC104815985' => 'tha', 'THA.LOC104822250' => 'tha', 'THA.LOC104826071' => 'tha', 'Thecc.01G265200' => 'tca', 'Thecc.01G265300' => 'tca', 'Thecc.01G265700' => 'tca', 'Thecc.03G109100' => 'tca', 'Thecc.04G245900' => 'tca', 'Thecc.04G246000' => 'tca', 'Thhalv10003334m.g' => 'esa', 'Thhalv10005508m.g' => 'esa', 'Thhalv10005643m.g' => 'esa', 'Thhalv10007316m.g' => 'esa', 'Thhalv10009006m.g' => 'esa', 'Thhalv10009309m.g' => 'esa', 'Thhalv10014917m.g' => 'esa', 'Thhalv10014919m.g' => 'esa', 'Thhalv10015393m.g' => 'esa', 'Thhalv10016515m.g' => 'esa', 'Thhalv10029242m.g' => 'esa', 'TPR.G16654' => 'tpr', 'TPR.G20589' => 'tpr', 'TPR.G23029' => 'tpr', 'TPR.G27731' => 'tpr', 'TPR.G28889' => 'tpr', 'TPR.G28899' => 'tpr', 'TPR.G30846' => 'tpr', 'TPR.G5452' => 'tpr', 'TPR.G5713' => 'tpr', 'TPR.G9046' => 'tpr', 'TPR.G9061' => 'tpr', 'TWI09G1075' => 'twi', 'TWI12G0806' => 'twi', 'TWI18G0108' => 'twi', 'TWI53G1361' => 'twi', 'TWI73G0185' => 'twi', 'TWI73G0427' => 'twi', 'unitig_37.g12001' => 'ugi', 'unitig_747.g21660' => 'ugi', 'unitig_748.g7232' => 'ugi', 'unitig_748.g7315' => 'ugi', 'unitig_85.g27262' => 'ugi', 'unitig_92.g28220' => 'ugi', 'vmacro02632' => 'vma', 'vmacro08410' => 'vma', 'vmacro08411' => 'vma', 'vmacro15407' => 'vma', 'VMungo0251G3619' => 'vmu', 'VMungo0720G1204' => 'vmu', 'VMungo0720G1918' => 'vmu', 'VMungo0720G2387' => 'vmu', 'VMungo0720G2961' => 'vmu', 'VMungo1215G2154' => 'vmu', 'VMungo1383G2411' => 'vmu', 'Zm00001eb051130' => 'zma', 'Zm00001eb116830' => 'zma', 'Zm00001eb116850' => 'zma', 'Zm00001eb151740' => 'zma', 'Zm00001eb292360' => 'zma', 'Zm00001eb301640' => 'zma' ), 'gf_id' => 'HOM05D000856', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000856' ), 'data_identifier' => 'HOM05D000856', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000856', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p00010' => 'bna', 'A03p04160' => 'bna', 'A03p17160' => 'bna', 'A04p23370' => 'bna', 'A05p14860' => 'bna', 'A08p37020' => 'bna', 'A09p08050' => 'bna', 'A09p66800' => 'bna', 'A09p67940' => 'bna', 'A10p02680' => 'bna', 'A10p05320' => 'bna', 'Aa31LG1G20560' => 'aar', 'Aa31LG1G20610' => 'aar', 'Aa31LG1G7810' => 'aar', 'Aa31LG5G3590' => 'aar', 'Aa31LG5G6140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3819' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4683' => 'aag', 'Actinidia04480' => 'ach', 'Actinidia05466' => 'ach', 'Actinidia08445' => 'ach', 'Actinidia21170' => 'ach', 'Actinidia24812' => 'ach', 'Actinidia24951' => 'ach', 'Actinidia40088' => 'ach', 'Ah.02g111660' => 'amhyb', 'Ah.11g048900' => 'amhyb', 'Ah.11g049910' => 'amhyb', 'AL1G13870' => 'aly', 'AL1G13880' => 'aly', 'AL1G16760' => 'aly', 'AL390U10020' => 'aly', 'AL4G25520' => 'aly', 'AL6G19890' => 'aly', 'AL6G19900' => 'aly', 'AL6G19910' => 'aly', 'AL8G40100' => 'aly', 'Aqoxy2G03562' => 'aox', 'Aqoxy5G00316' => 'aox', 'Aqoxy5G00926' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1628KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1H403S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2FU6SJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.882I6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8YRY2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YN1SN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AF70II' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZA8L1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F916KL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHRD8H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KTZ8QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S22EMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8M29T' => 'arhy', 'AT1G04270' => 'ath', 'AT1G04280' => 'ath', 'AT1G06750' => 'ath', 'AT1G33850' => 'ath', 'AT2G30630' => 'ath', 'AT5G09490' => 'ath', 'AT5G09500' => 'ath', 'AT5G09510' => 'ath', 'AT5G43640' => 'ath', 'AT5G63070' => 'ath', 'ATR0605G315' => 'atr', 'Atru.chr11.175' => 'acertr', 'Atru.chr11.653' => 'acertr', 'Atru.chr3.1616' => 'acertr', 'Atru.chr4.2230' => 'acertr', 'Atru.chr4.2232' => 'acertr', 'Atru.chr5.1598' => 'acertr', 'Atru.chr5.1600' => 'acertr', 'Atru.chr5.2188' => 'acertr', 'AUR62008326' => 'cqu', 'AUR62011922' => 'cqu', 'AUR62011924' => 'cqu', 'AUR62021771' => 'cqu', 'AUR62032237' => 'cqu', 'AUR62032240' => 'cqu', 'BcaB01g05572' => 'bca', 'BcaB02g10337' => 'bca', 'BcaB04g19944' => 'bca', 'BcaB05g21548' => 'bca', 'BcaB05g21549' => 'bca', 'BcaB05g23227' => 'bca', 'BcaB06g26256' => 'bca', 'BcaB06g26257' => 'bca', 'BcaB06g28379' => 'bca', 'BcaC02g11159' => 'bca', 'BcaC03g13258' => 'bca', 'BcaC03g13259' => 'bca', 'BcaC05g24456' => 'bca', 'BcaC05g24457' => 'bca', 'BcaC07g36922' => 'bca', 'BcaC07g36923' => 'bca', 'BcaC07g42050' => 'bca', 'BcaC07g42176' => 'bca', 'BcaC07g42195' => 'bca', 'BcaC07g42196' => 'bca', 'BcaNung06674' => 'bca', 'BolC2t06351H' => 'bol', 'BolC2t06352H' => 'bol', 'BolC3t12993H' => 'bol', 'BolC4t23525H' => 'bol', 'BolC4t27475H' => 'bol', 'BolC5t29025H' => 'bol', 'BolC5t29026H' => 'bol', 'BolC8t46898H' => 'bol', 'BolC8t46899H' => 'bol', 'BolC8t52630H' => 'bol', 'BolC8t52765H' => 'bol', 'BolC9t53824H' => 'bol', 'BraA03t09760Z' => 'bra', 'BraA03t10990Z' => 'bra', 'BraA05t20413Z' => 'bra', 'BraA08t35602Z' => 'bra', 'BraA09t36458Z' => 'bra', 'BraA09t42018Z' => 'bra', 'BraA09t42129Z' => 'bra', 'BraA10t42536Z' => 'bra', 'BraA10t42537Z' => 'bra', 'C01p10690' => 'bna', 'C02p03890' => 'bna', 'C02p03900' => 'bna', 'C03p04620' => 'bna', 'C04p19870' => 'bna', 'C04p59670' => 'bna', 'C05p02460' => 'bna', 'C05p02470' => 'bna', 'C08p00980' => 'bna', 'C08p00990' => 'bna', 'C08p51030' => 'bna', 'C08p52360' => 'bna', 'C09p09120' => 'bna', 'CAN.G19.15' => 'can', 'CAN.G251.10' => 'can', 'CAN.G251.9' => 'can', 'CAN.G398.24' => 'can', 'CAN.G410.32' => 'can', 'CAN.G881.2' => 'can', 'CANSAT01G3025' => 'cansat', 'CANSAT78G1211' => 'cansat', 'CANSAT78G1218' => 'cansat', 'CANSAT78G1521' => 'cansat', 'CANSAT78G1670' => 'cansat', 'CARHR003600' => 'chi', 'CARHR003610' => 'chi', 'CARHR006290' => 'chi', 'CARHR006430' => 'chi', 'CARHR124110' => 'chi', 'CARHR203870' => 'chi', 'CARHR203880' => 'chi', 'CARHR203890' => 'chi', 'CARHR276880' => 'chi', 'Carub.0001s0346' => 'cru', 'Carub.0001s0347' => 'cru', 'Carub.0001s0607' => 'cru', 'Carub.0003s2768' => 'cru', 'Carub.0003s2769' => 'cru', 'Carub.0004s1178' => 'cru', 'Carub.0006s0806' => 'cru', 'Carub.0006s0807' => 'cru', 'Carub.0006s0808' => 'cru', 'Carub.0008s0501' => 'cru', 'Carub.0008s2379' => 'cru', 'Ca_08655_v3' => 'car', 'Ca_08922_v3' => 'car', 'Ca_08923_v3' => 'car', 'Ca_09119_v3' => 'car', 'Ca_09703_v3' => 'car', 'Ca_09705_v3' => 'car', 'Ca_09835_v3' => 'car', 'Ca_26403_v3' => 'car', 'Ca_30719_v3' => 'car', 'CBR_g17958' => 'cbr', 'CBR_g40516' => 'cbr', 'Cc00_g05350' => 'ccan', 'Cc01_g18690' => 'ccan', 'Cc03_g04830' => 'ccan', 'Cc03_g04850' => 'ccan', 'CDE02G4469' => 'cde', 'CDE06G0883' => 'cde', 'CDE06G1295' => 'cde', 'CDE06G1390' => 'cde', 'CDE07G0584' => 'cde', 'CDE07G1084' => 'cde', 'CDE08G1259' => 'cde', 'Cfa002341' => 'cfa', 'Cfa024337' => 'cfa', 'Ciclev10004749m.g' => 'ccl', 'Ciclev10006127m.g' => 'ccl', 'Ciclev10019720m.g' => 'ccl', 'Ciclev10022652m.g' => 'ccl', 'CiPaw.01G190400' => 'cil', 'CiPaw.01G190500' => 'cil', 'CiPaw.02G116400' => 'cil', 'CiPaw.02G116500' => 'cil', 'CiPaw.04G183000' => 'cil', 'CiPaw.04G183300' => 'cil', 'ClCG05G004610' => 'cla', 'ClCG05G004620' => 'cla', 'ClCG06G006730' => 'cla', 'ClCG06G006740' => 'cla', 'ClCG11G003690' => 'cla', 'COL.COLO4_08276' => 'col', 'COL.COLO4_08277' => 'col', 'COL.COLO4_15787' => 'col', 'COL.COLO4_15789' => 'col', 'Cpa.g.c44815' => 'cpa', 'Cpa.g.sc52.144' => 'cpa', 'Cpa.g.sc58.46' => 'cpa', 'Cpa.g.sc58.47' => 'cpa', 'Cre08.g360900' => 'cre', 'CsaV3_2G013030' => 'csa', 'CsaV3_2G013050' => 'csa', 'CsaV3_2G015620' => 'csa', 'CsaV3_3G012590' => 'csa', 'CsaV3_3G012600' => 'csa', 'CSS0001641' => 'camsi', 'CSS0008310' => 'camsi', 'CSS0013011' => 'camsi', 'CSS0017147' => 'camsi', 'CSS0022970' => 'camsi', 'CSS0025655' => 'camsi', 'CSS0028665' => 'camsi', 'CSS0029117' => 'camsi', 'CSS0032024' => 'camsi', 'CSS0039681' => 'camsi', 'CSS0046516' => 'camsi', 'CSS0050307' => 'camsi', 'DCAR_005871' => 'dca', 'DCAR_007342' => 'dca', 'DCAR_024228' => 'dca', 'DCAR_027277' => 'dca', 'DCAR_030718' => 'dca', 'Dinv20287' => 'din', 'Dinv22461' => 'din', 'Dinv22464' => 'din', 'Dinv29912' => 'din', 'Dinv29913' => 'din', 'Dinv34580' => 'din', 'Dinv34582' => 'din', 'Dinv44632' => 'din', 'Duzib052G0266' => 'dzi', 'Duzib133G0907' => 'dzi', 'Duzib133G1034' => 'dzi', 'Duzib138G0207' => 'dzi', 'Duzib138G0491' => 'dzi', 'Duzib151G0812' => 'dzi', 'Duzib151G1166' => 'dzi', 'Duzib168G0192' => 'dzi', 'Duzib211G0077' => 'dzi', 'Duzib212G0429' => 'dzi', 'Duzib212G0472' => 'dzi', 'ECA233G2617' => 'eca', 'ECA236G4188' => 'eca', 'ECA240G0936' => 'eca', 'ECA240G1129' => 'eca', 'ECA247G0623' => 'eca', 'EL10Ac5g10451' => 'bvu', 'EL10Ac5g10453' => 'bvu', 'EL10Ac5g10894' => 'bvu', 'Eucgr.H00192' => 'egr', 'Eucgr.H00193' => 'egr', 'Eucgr.H00194' => 'egr', 'Eucgr.J01562' => 'egr', 'Eucgr.K03301' => 'egr', 'FAN02G0632' => 'fan', 'FAN05G5378' => 'fan', 'FAN09G3247' => 'fan', 'FAN12G0435' => 'fan', 'FAN12G2426' => 'fan', 'FAN14G1707' => 'fan', 'FAN14G4725' => 'fan', 'FAN15G2071' => 'fan', 'FAN17G3065' => 'fan', 'FAN19G1376' => 'fan', 'FAN20G0354' => 'fan', 'FAN20G2429' => 'fan', 'FAN20G2658' => 'fan', 'FAN24G2343' => 'fan', 'FAN27G2362' => 'fan', 'FAN28G1765' => 'fan', 'FvH4_1g16020' => 'fve', 'FvH4_2g04890' => 'fve', 'FvH4_2g22270' => 'fve', 'FvH4_4g02630' => 'fve', 'FvH4_4g02640' => 'fve', 'FvH4_6g02650' => 'fve', 'Glyma.02G140600' => 'gma', 'Glyma.03G159900' => 'gma', 'Glyma.05G234800' => 'gma', 'Glyma.07G269600' => 'gma', 'Glyma.08G042300' => 'gma', 'Glyma.10G033500' => 'gma', 'Glyma.10G185200' => 'gma', 'Glyma.17G004300' => 'gma', 'Glyma.19G161900' => 'gma', 'Glyma.20G205100' => 'gma', 'Glyma.20G205200' => 'gma', 'Gohir.A01G139101' => 'ghi', 'Gohir.A02G035600' => 'ghi', 'Gohir.A02G117901' => 'ghi', 'Gohir.A07G210100' => 'ghi', 'Gohir.A07G210200' => 'ghi', 'Gohir.A08G061100' => 'ghi', 'Gohir.A09G223000' => 'ghi', 'Gohir.A09G223100' => 'ghi', 'Gohir.A10G113900' => 'ghi', 'Gohir.A10G114000' => 'ghi', 'Gohir.D02G042300' => 'ghi', 'Gohir.D07G216100' => 'ghi', 'Gohir.D07G216200' => 'ghi', 'Gohir.D08G070400' => 'ghi', 'Gohir.D09G225000' => 'ghi', 'Gohir.D09G225100' => 'ghi', 'Gohir.D10G152300' => 'ghi', 'Gohir.D10G153200' => 'ghi', 'Gohir.D11G133701' => 'ghi', 'Gorai.004G074100' => 'gra', 'Gorai.005G046800' => 'gra', 'Gorai.006G246500' => 'gra', 'Gorai.006G246600' => 'gra', 'Gorai.007G142900' => 'gra', 'Gorai.011G171000' => 'gra', 'Gorai.011G171100' => 'gra', 'Gorai.013G104300' => 'gra', 'Gorai.013G104400' => 'gra', 'GSVIVG01000754001' => 'vvi', 'GSVIVG01000756001' => 'vvi', 'GSVIVG01010903001' => 'vvi', 'GSVIVG01017623001' => 'vvi', 'GSVIVG01018113001' => 'vvi', 'GSVIVG01018116001' => 'vvi', 'GSVIVG01018118001' => 'vvi', 'HanXRQChr03g0076211' => 'han', 'HanXRQChr03g0092431' => 'han', 'HanXRQChr03g0092441' => 'han', 'HanXRQChr03g0092591' => 'han', 'HanXRQChr03g0092671' => 'han', 'HanXRQChr03g0092681' => 'han', 'HanXRQChr03g0092691' => 'han', 'HanXRQChr03g0092701' => 'han', 'HanXRQChr03g0092721' => 'han', 'HanXRQChr03g0092731' => 'han', 'HanXRQChr04g0113681' => 'han', 'HanXRQChr10g0281371' => 'han', 'HanXRQChr11g0337141' => 'han', 'HanXRQChr13g0424521' => 'han', 'HanXRQChr13g0424531' => 'han', 'HanXRQChr13g0424541' => 'han', 'HanXRQChr16g0498221' => 'han', 'Haze_04377' => 'cav', 'Haze_11298' => 'cav', 'Haze_24547' => 'cav', 'Haze_24550' => 'cav', 'Haze_26587' => 'cav', 'Hma1.2p1_0650F.1_g195410' => 'hma', 'Hma1.2p1_0893F.1_g233470' => 'hma', 'HPP92_006508' => 'vpl', 'HPP92_024780' => 'vpl', 'Hund02688' => 'sun', 'Hund09380' => 'sun', 'Hund09381' => 'sun', 'Hund09832' => 'sun', 'Hund09833' => 'sun', 'Hund11351' => 'sun', 'Hund11513' => 'sun', 'Lalb_Chr06g0162591' => 'lal', 'Lalb_Chr06g0162601' => 'lal', 'Lalb_Chr06g0169321' => 'lal', 'Lalb_Chr09g0330951' => 'lal', 'Lalb_Chr16g0387631' => 'lal', 'Lalb_Chr21g0306241' => 'lal', 'Lalb_Chr25g0290051' => 'lal', 'Lalb_Chr25g0290061' => 'lal', 'Lalb_Chr25g0290071' => 'lal', 'Lj1g0003876' => 'lja', 'Lj1P1207T36' => 'lonja', 'Lj2C1156G12' => 'lonja', 'Lj3A793G39' => 'lonja', 'Lj3C580G2' => 'lonja', 'Lj3C780G2' => 'lonja', 'Lj3C780T4' => 'lonja', 'Lj3C793G9' => 'lonja', 'Lj4g0012960' => 'lja', 'Lj5g0021252' => 'lja', 'Lj5g0021484' => 'lja', 'Lj5g0024528' => 'lja', 'Lj6A399T12' => 'lonja', 'Lj6A656G65' => 'lonja', 'Lsat_1_v5_gn_3_125500' => 'lsa', 'Lsat_1_v5_gn_3_125540' => 'lsa', 'Lsat_1_v5_gn_5_72701' => 'lsa', 'Lsat_1_v5_gn_8_91560' => 'lsa', 'Lsat_1_v5_gn_9_9640' => 'lsa', 'Manes.01G200600' => 'mes', 'Manes.01G200700' => 'mes', 'Manes.03G168900' => 'mes', 'Manes.03G169000' => 'mes', 'Manes.05G085801' => 'mes', 'Manes.05G086200' => 'mes', 'Manes.15G036700' => 'mes', 'Manes.15G036900' => 'mes', 'Mapoly0004s0172' => 'mpo', 'Mapoly0023s0001' => 'mpo', 'Mapoly0142s0012' => 'mpo', 'MBI01_g32854_MAGBIO' => 'mbi', 'MBI11_g24427_MAGBIO' => 'mbi', 'MBI11_g47319_MAGBIO' => 'mbi', 'MCO01G433' => 'mco', 'MD00G1187800' => 'mdo', 'MD04G1226500' => 'mdo', 'MD05G1203900' => 'mdo', 'MD10G1191100' => 'mdo', 'MD12G1243500' => 'mdo', 'MD13G1207000' => 'mdo', 'MD13G1207100' => 'mdo', 'MD16G1208600' => 'mdo', 'Medtr1g050352' => 'mtr', 'Medtr1g070385' => 'mtr', 'Medtr1g070450' => 'mtr', 'Medtr1g075200' => 'mtr', 'Medtr1g075250' => 'mtr', 'Medtr1g075260' => 'mtr', 'Medtr1g475250' => 'mtr', 'Medtr4g075450' => 'mtr', 'Medtr7g096300' => 'mtr', 'Medtr8g105110' => 'mtr', 'MELO3C006470.2' => 'cme', 'MELO3C006471.2' => 'cme', 'MELO3C020772.2' => 'cme', 'MELO3C026780.2' => 'cme', 'MELO3C026781.2' => 'cme', 'Migut.D00390' => 'egut', 'Migut.G00435' => 'egut', 'Migut.G00436' => 'egut', 'Migut.G00718' => 'egut', 'MSTRG.21891' => 'ama', 'MSTRG.26910' => 'ama', 'MSTRG.4099' => 'ama', 'MSTRG.9925' => 'ama', 'Nitab4.5_0000165g0010' => 'nta', 'Nitab4.5_0000209g0180' => 'nta', 'Nitab4.5_0000244g0440' => 'nta', 'Nitab4.5_0000525g0220' => 'nta', 'Nitab4.5_0001597g0020' => 'nta', 'Nitab4.5_0001878g0040' => 'nta', 'Nitab4.5_0001878g0060' => 'nta', 'Nitab4.5_0002838g0100' => 'nta', 'Nitab4.5_0002838g0120' => 'nta', 'Nitab4.5_0004798g0030' => 'nta', 'Nitab4.5_0005420g0010' => 'nta', 'Nitab4.5_0005507g0010' => 'nta', 'Nitab4.5_0005574g0020' => 'nta', 'Nitab4.5_0005838g0010' => 'nta', 'Nitab4.5_0010580g0020' => 'nta', 'Nn1g02599' => 'nnu', 'Nn1g02608' => 'nnu', 'Nn3g17742' => 'nnu', 'Nn3g19534' => 'nnu', 'Nn3g19535' => 'nnu', 'Oeu008790.1' => 'oeu', 'Oeu008792.1' => 'oeu', 'Oeu032590.1' => 'oeu', 'Oeu035349.1' => 'oeu', 'Oeu049791.1' => 'oeu', 'Os01g0774500' => 'osa', 'Os03g0628800' => 'osa', 'Os03g0798600' => 'osa', 'Os05g0508800' => 'osa', 'Peaxi162Scf00036g02018' => 'pax', 'Peaxi162Scf00578g00032' => 'pax', 'Peaxi162Scf00578g00317' => 'pax', 'Peaxi162Scf00785g00114' => 'pax', 'Peaxi162Scf00813g00119' => 'pax', 'Peaxi162Scf00906g00227' => 'pax', 'PGR004G0875' => 'pgr', 'PGR004G2424' => 'pgr', 'PGR031G1239' => 'pgr', 'PGR031G2474' => 'pgr', 'PGR044G0423' => 'pgr', 'PGSC0003DMG400001128' => 'stu', 'PGSC0003DMG400007336' => 'stu', 'PGSC0003DMG400016318' => 'stu', 'PGSC0003DMG400016319' => 'stu', 'PGSC0003DMG400018074' => 'stu', 'Phvul.001G157700' => 'pvu', 'Phvul.002G148550' => 'pvu', 'Phvul.002G320200' => 'pvu', 'Phvul.003G089200' => 'pvu', 'Phvul.007G126000' => 'pvu', 'Phvul.007G126100' => 'pvu', 'Phvul.007G178000' => 'pvu', 'Phvul.007G178200' => 'pvu', 'Potri.002G043000' => 'ptr', 'Potri.002G043200' => 'ptr', 'Potri.003G123750' => 'ptr', 'Potri.005G055401' => 'ptr', 'Potri.005G219700' => 'ptr', 'Potri.005G220000' => 'ptr', 'Potri.008G161901' => 'ptr', 'Potri.008G162000' => 'ptr', 'Potri.008G162400' => 'ptr', 'Potri.010G076900' => 'ptr', 'Pp3c12_9180' => 'ppa', 'Pp3c13_19770' => 'ppa', 'Pp3c14_22950' => 'ppa', 'Pp3c16_12160' => 'ppa', 'Pp3c27_7820' => 'ppa', 'Pp3c2_3490' => 'ppa', 'Pp3c3_23700' => 'ppa', 'Pp3c3_36520' => 'ppa', 'Pp3c4_15250' => 'ppa', 'PRCOL_00007002' => 'pco', 'Prupe.1G030600' => 'ppe', 'Prupe.1G030700' => 'ppe', 'Prupe.6G345200' => 'ppe', 'Prupe.8G230300' => 'ppe', 'Prupe.8G230500' => 'ppe', 'Psat3g059600' => 'psa', 'Psat5g200920' => 'psa', 'Psat6g056440' => 'psa', 'Psat6g057360' => 'psa', 'Psat6g134120' => 'psa', 'Psat6g134160' => 'psa', 'Psat7g008640' => 'psa', 'Psat7g185240' => 'psa', 'PSO017G1330' => 'pso', 'PSO063G6097' => 'pso', 'PSO170G0835' => 'pso', 'PSO170G2499' => 'pso', 'PSO210G5058' => 'pso', 'PSO210G6154' => 'pso', 'PSO585G0031' => 'pso', 'PSO832G0264' => 'pso', 'PSO832G4288' => 'pso', 'QL03p027355' => 'qlo', 'QL03p027430' => 'qlo', 'QL04p081380' => 'qlo', 'QL06p015642' => 'qlo', 'QL06p015650' => 'qlo', 'QL06p015686' => 'qlo', 'QL12p042927' => 'qlo', 'QL93p1863_0035' => 'qlo', 'RcHm_v2.0_Chr3g0450581' => 'rch', 'RcHm_v2.0_Chr4g0390371' => 'rch', 'RcHm_v2.0_Chr4g0390381' => 'rch', 'RcHm_v2.0_Chr4g0390491' => 'rch', 'RcHm_v2.0_Chr4g0390501' => 'rch', 'RcHm_v2.0_Chr6g0289231' => 'rch', 'Rhsim04G0190400' => 'rsi', 'Rhsim04G0190500' => 'rsi', 'Rhsim04G0190600' => 'rsi', 'Rhsim13G0031400' => 'rsi', 'Rhsim13G0165600' => 'rsi', 'RhsimUnG0114600' => 'rsi', 'RhsimUnG0114700' => 'rsi', 'Sabra02G0034800' => 'sbr', 'Sabra02G0035100' => 'sbr', 'Sabra05G0168600' => 'sbr', 'Sabra05G0168800' => 'sbr', 'Sabra08G0123700' => 'sbr', 'Sabra10G0031900' => 'sbr', 'Sabra13G0039000' => 'sbr', 'SalBow2G0782' => 'sbo', 'SalBow2G1403' => 'sbo', 'SalBow4G0074' => 'sbo', 'SalBow4G2635' => 'sbo', 'SalBow5G3010' => 'sbo', 'Sc05g0000870' => 'sci', 'Sc05g0000890' => 'sci', 'Sc13g0005000' => 'sci', 'Sc13g0005030' => 'sci', 'Sc19g0003790' => 'sci', 'Sc19g0003800' => 'sci', 'Sed0003467' => 'sed', 'Sed0009355' => 'sed', 'Sed0009894' => 'sed', 'Sed0011972' => 'sed', 'Sed0021483' => 'sed', 'Sed0021750' => 'sed', 'Sed0026279' => 'sed', 'SEGI_05312' => 'sgi', 'SEGI_10112' => 'sgi', 'SEGI_15835' => 'sgi', 'SEGI_30386' => 'sgi', 'SEGI_34122' => 'sgi', 'SEGI_35063' => 'sgi', 'SGA_v2.0_scaffold101G29794' => 'sas', 'SGA_v2.0_scaffold1G00573' => 'sas', 'SGA_v2.0_scaffold79G25637' => 'sas', 'SGA_v2.0_scaffold88G27283' => 'sas', 'SGA_v2.0_scaffold88G27285' => 'sas', 'SGA_v2.0_scaffold88G27331' => 'sas', 'SHI09937' => 'shi', 'SMO119G0302' => 'smo', 'SMO137G0231' => 'smo', 'SMO367G1151' => 'smo', 'Solyc02g082000.3' => 'sly', 'Solyc06g031670.3' => 'sly', 'Solyc06g053810.3' => 'sly', 'Solyc07g025457.1' => 'sly', 'Solyc08g059740.1' => 'sly', 'Solyc08g059750.3' => 'sly', 'Solyc09g083370.3' => 'sly', 'Solyc12g038950.3' => 'sly', 'Sopen02g026630' => 'spe', 'Sopen06g018930' => 'spe', 'Sopen06g018940' => 'spe', 'Sopen08g009460' => 'spe', 'Sopen09g032290' => 'spe', 'Sp1g03080' => 'spa', 'Sp1g03090' => 'spa', 'Sp1g05480' => 'spa', 'Sp2g07860' => 'spa', 'Sp2g08430' => 'spa', 'Sp2g08440' => 'spa', 'Sp2g26200' => 'spa', 'Sp4g13170' => 'spa', 'Sp6g33840' => 'spa', 'SpUn1204_0010' => 'spa', 'TAR365G0908' => 'tar', 'TAR381G1270' => 'tar', 'TAR381G1651' => 'tar', 'TAR625G1131' => 'tar', 'TAR633G0962' => 'tar', 'TAR633G1729' => 'tar', 'TAR633G1864' => 'tar', 'TAR636G0221' => 'tar', 'TAR636G0314' => 'tar', 'TAR636G3202' => 'tar', 'THA.LOC104800805' => 'tha', 'THA.LOC104801096' => 'tha', 'THA.LOC104801555' => 'tha', 'THA.LOC104808491' => 'tha', 'THA.LOC104808595' => 'tha', 'THA.LOC104815985' => 'tha', 'THA.LOC104822250' => 'tha', 'THA.LOC104826071' => 'tha', 'Thecc.01G265200' => 'tca', 'Thecc.01G265300' => 'tca', 'Thecc.01G265700' => 'tca', 'Thecc.03G109100' => 'tca', 'Thecc.04G245900' => 'tca', 'Thecc.04G246000' => 'tca', 'Thhalv10003334m.g' => 'esa', 'Thhalv10005508m.g' => 'esa', 'Thhalv10005643m.g' => 'esa', 'Thhalv10007316m.g' => 'esa', 'Thhalv10009006m.g' => 'esa', 'Thhalv10009309m.g' => 'esa', 'Thhalv10014917m.g' => 'esa', 'Thhalv10014919m.g' => 'esa', 'Thhalv10015393m.g' => 'esa', 'Thhalv10016515m.g' => 'esa', 'Thhalv10029242m.g' => 'esa', 'TPR.G16654' => 'tpr', 'TPR.G20589' => 'tpr', 'TPR.G23029' => 'tpr', 'TPR.G27731' => 'tpr', 'TPR.G28889' => 'tpr', 'TPR.G28899' => 'tpr', 'TPR.G30846' => 'tpr', 'TPR.G5452' => 'tpr', 'TPR.G5713' => 'tpr', 'TPR.G9046' => 'tpr', 'TPR.G9061' => 'tpr', 'TWI09G1075' => 'twi', 'TWI12G0806' => 'twi', 'TWI18G0108' => 'twi', 'TWI53G1361' => 'twi', 'TWI73G0185' => 'twi', 'TWI73G0427' => 'twi', 'unitig_37.g12001' => 'ugi', 'unitig_747.g21660' => 'ugi', 'unitig_748.g7232' => 'ugi', 'unitig_748.g7315' => 'ugi', 'unitig_85.g27262' => 'ugi', 'unitig_92.g28220' => 'ugi', 'vmacro02632' => 'vma', 'vmacro08410' => 'vma', 'vmacro08411' => 'vma', 'vmacro15407' => 'vma', 'VMungo0251G3619' => 'vmu', 'VMungo0720G1204' => 'vmu', 'VMungo0720G1918' => 'vmu', 'VMungo0720G2387' => 'vmu', 'VMungo0720G2961' => 'vmu', 'VMungo1215G2154' => 'vmu', 'VMungo1383G2411' => 'vmu', 'Zm00001eb051130' => 'zma', 'Zm00001eb116830' => 'zma', 'Zm00001eb116850' => 'zma', 'Zm00001eb151740' => 'zma', 'Zm00001eb292360' => 'zma', 'Zm00001eb301640' => 'zma' ) $gf_id = 'HOM05D000856' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000856' ) $data_identifier = 'HOM05D000856' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 13, 'ath' => (int) 10, 'atr' => (int) 1, 'acertr' => (int) 8, 'cqu' => (int) 6, 'bca' => (int) 21, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 11, 'car' => (int) 9, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 8, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 5, 'fan' => (int) 16, 'fve' => (int) 6, 'gma' => (int) 11, 'ghi' => (int) 19, 'gra' => (int) 9, 'vvi' => (int) 7, 'han' => (int) 17, 'cav' => (int) 5, 'hma' => (int) 2, 'vpl' => (int) 2, 'sun' => (int) 7, 'lal' => (int) 9, 'lja' => (int) 5, 'lonja' => (int) 9, 'lsa' => (int) 5, 'mes' => (int) 8, 'mpo' => (int) 3, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 10, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 15, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 9, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 9, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 6, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 5, 'spa' => (int) 10, 'tar' => (int) 10, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 11, 'tpr' => (int) 11, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 4, 'vmu' => (int) 7, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb301640' $species_info = array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ) $local_species = 'sun' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000856', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p00010' => 'bna', 'A03p04160' => 'bna', 'A03p17160' => 'bna', 'A04p23370' => 'bna', 'A05p14860' => 'bna', 'A08p37020' => 'bna', 'A09p08050' => 'bna', 'A09p66800' => 'bna', 'A09p67940' => 'bna', 'A10p02680' => 'bna', 'A10p05320' => 'bna', 'Aa31LG1G20560' => 'aar', 'Aa31LG1G20610' => 'aar', 'Aa31LG1G7810' => 'aar', 'Aa31LG5G3590' => 'aar', 'Aa31LG5G6140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3819' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4683' => 'aag', 'Actinidia04480' => 'ach', 'Actinidia05466' => 'ach', 'Actinidia08445' => 'ach', 'Actinidia21170' => 'ach', 'Actinidia24812' => 'ach', 'Actinidia24951' => 'ach', 'Actinidia40088' => 'ach', 'Ah.02g111660' => 'amhyb', 'Ah.11g048900' => 'amhyb', 'Ah.11g049910' => 'amhyb', 'AL1G13870' => 'aly', 'AL1G13880' => 'aly', 'AL1G16760' => 'aly', 'AL390U10020' => 'aly', 'AL4G25520' => 'aly', 'AL6G19890' => 'aly', 'AL6G19900' => 'aly', 'AL6G19910' => 'aly', 'AL8G40100' => 'aly', 'Aqoxy2G03562' => 'aox', 'Aqoxy5G00316' => 'aox', 'Aqoxy5G00926' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1628KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1H403S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2FU6SJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.882I6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8YRY2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YN1SN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AF70II' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZA8L1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F916KL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHRD8H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KTZ8QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S22EMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8M29T' => 'arhy', 'AT1G04270' => 'ath', 'AT1G04280' => 'ath', 'AT1G06750' => 'ath', 'AT1G33850' => 'ath', 'AT2G30630' => 'ath', 'AT5G09490' => 'ath', 'AT5G09500' => 'ath', 'AT5G09510' => 'ath', 'AT5G43640' => 'ath', 'AT5G63070' => 'ath', 'ATR0605G315' => 'atr', 'Atru.chr11.175' => 'acertr', 'Atru.chr11.653' => 'acertr', 'Atru.chr3.1616' => 'acertr', 'Atru.chr4.2230' => 'acertr', 'Atru.chr4.2232' => 'acertr', 'Atru.chr5.1598' => 'acertr', 'Atru.chr5.1600' => 'acertr', 'Atru.chr5.2188' => 'acertr', 'AUR62008326' => 'cqu', 'AUR62011922' => 'cqu', 'AUR62011924' => 'cqu', 'AUR62021771' => 'cqu', 'AUR62032237' => 'cqu', 'AUR62032240' => 'cqu', 'BcaB01g05572' => 'bca', 'BcaB02g10337' => 'bca', 'BcaB04g19944' => 'bca', 'BcaB05g21548' => 'bca', 'BcaB05g21549' => 'bca', 'BcaB05g23227' => 'bca', 'BcaB06g26256' => 'bca', 'BcaB06g26257' => 'bca', 'BcaB06g28379' => 'bca', 'BcaC02g11159' => 'bca', 'BcaC03g13258' => 'bca', 'BcaC03g13259' => 'bca', 'BcaC05g24456' => 'bca', 'BcaC05g24457' => 'bca', 'BcaC07g36922' => 'bca', 'BcaC07g36923' => 'bca', 'BcaC07g42050' => 'bca', 'BcaC07g42176' => 'bca', 'BcaC07g42195' => 'bca', 'BcaC07g42196' => 'bca', 'BcaNung06674' => 'bca', 'BolC2t06351H' => 'bol', 'BolC2t06352H' => 'bol', 'BolC3t12993H' => 'bol', 'BolC4t23525H' => 'bol', 'BolC4t27475H' => 'bol', 'BolC5t29025H' => 'bol', 'BolC5t29026H' => 'bol', 'BolC8t46898H' => 'bol', 'BolC8t46899H' => 'bol', 'BolC8t52630H' => 'bol', 'BolC8t52765H' => 'bol', 'BolC9t53824H' => 'bol', 'BraA03t09760Z' => 'bra', 'BraA03t10990Z' => 'bra', 'BraA05t20413Z' => 'bra', 'BraA08t35602Z' => 'bra', 'BraA09t36458Z' => 'bra', 'BraA09t42018Z' => 'bra', 'BraA09t42129Z' => 'bra', 'BraA10t42536Z' => 'bra', 'BraA10t42537Z' => 'bra', 'C01p10690' => 'bna', 'C02p03890' => 'bna', 'C02p03900' => 'bna', 'C03p04620' => 'bna', 'C04p19870' => 'bna', 'C04p59670' => 'bna', 'C05p02460' => 'bna', 'C05p02470' => 'bna', 'C08p00980' => 'bna', 'C08p00990' => 'bna', 'C08p51030' => 'bna', 'C08p52360' => 'bna', 'C09p09120' => 'bna', 'CAN.G19.15' => 'can', 'CAN.G251.10' => 'can', 'CAN.G251.9' => 'can', 'CAN.G398.24' => 'can', 'CAN.G410.32' => 'can', 'CAN.G881.2' => 'can', 'CANSAT01G3025' => 'cansat', 'CANSAT78G1211' => 'cansat', 'CANSAT78G1218' => 'cansat', 'CANSAT78G1521' => 'cansat', 'CANSAT78G1670' => 'cansat', 'CARHR003600' => 'chi', 'CARHR003610' => 'chi', 'CARHR006290' => 'chi', 'CARHR006430' => 'chi', 'CARHR124110' => 'chi', 'CARHR203870' => 'chi', 'CARHR203880' => 'chi', 'CARHR203890' => 'chi', 'CARHR276880' => 'chi', 'Carub.0001s0346' => 'cru', 'Carub.0001s0347' => 'cru', 'Carub.0001s0607' => 'cru', 'Carub.0003s2768' => 'cru', 'Carub.0003s2769' => 'cru', 'Carub.0004s1178' => 'cru', 'Carub.0006s0806' => 'cru', 'Carub.0006s0807' => 'cru', 'Carub.0006s0808' => 'cru', 'Carub.0008s0501' => 'cru', 'Carub.0008s2379' => 'cru', 'Ca_08655_v3' => 'car', 'Ca_08922_v3' => 'car', 'Ca_08923_v3' => 'car', 'Ca_09119_v3' => 'car', 'Ca_09703_v3' => 'car', 'Ca_09705_v3' => 'car', 'Ca_09835_v3' => 'car', 'Ca_26403_v3' => 'car', 'Ca_30719_v3' => 'car', 'CBR_g17958' => 'cbr', 'CBR_g40516' => 'cbr', 'Cc00_g05350' => 'ccan', 'Cc01_g18690' => 'ccan', 'Cc03_g04830' => 'ccan', 'Cc03_g04850' => 'ccan', 'CDE02G4469' => 'cde', 'CDE06G0883' => 'cde', 'CDE06G1295' => 'cde', 'CDE06G1390' => 'cde', 'CDE07G0584' => 'cde', 'CDE07G1084' => 'cde', 'CDE08G1259' => 'cde', 'Cfa002341' => 'cfa', 'Cfa024337' => 'cfa', 'Ciclev10004749m.g' => 'ccl', 'Ciclev10006127m.g' => 'ccl', 'Ciclev10019720m.g' => 'ccl', 'Ciclev10022652m.g' => 'ccl', 'CiPaw.01G190400' => 'cil', 'CiPaw.01G190500' => 'cil', 'CiPaw.02G116400' => 'cil', 'CiPaw.02G116500' => 'cil', 'CiPaw.04G183000' => 'cil', 'CiPaw.04G183300' => 'cil', 'ClCG05G004610' => 'cla', 'ClCG05G004620' => 'cla', 'ClCG06G006730' => 'cla', 'ClCG06G006740' => 'cla', 'ClCG11G003690' => 'cla', 'COL.COLO4_08276' => 'col', 'COL.COLO4_08277' => 'col', 'COL.COLO4_15787' => 'col', 'COL.COLO4_15789' => 'col', 'Cpa.g.c44815' => 'cpa', 'Cpa.g.sc52.144' => 'cpa', 'Cpa.g.sc58.46' => 'cpa', 'Cpa.g.sc58.47' => 'cpa', 'Cre08.g360900' => 'cre', 'CsaV3_2G013030' => 'csa', 'CsaV3_2G013050' => 'csa', 'CsaV3_2G015620' => 'csa', 'CsaV3_3G012590' => 'csa', 'CsaV3_3G012600' => 'csa', 'CSS0001641' => 'camsi', 'CSS0008310' => 'camsi', 'CSS0013011' => 'camsi', 'CSS0017147' => 'camsi', 'CSS0022970' => 'camsi', 'CSS0025655' => 'camsi', 'CSS0028665' => 'camsi', 'CSS0029117' => 'camsi', 'CSS0032024' => 'camsi', 'CSS0039681' => 'camsi', 'CSS0046516' => 'camsi', 'CSS0050307' => 'camsi', 'DCAR_005871' => 'dca', 'DCAR_007342' => 'dca', 'DCAR_024228' => 'dca', 'DCAR_027277' => 'dca', 'DCAR_030718' => 'dca', 'Dinv20287' => 'din', 'Dinv22461' => 'din', 'Dinv22464' => 'din', 'Dinv29912' => 'din', 'Dinv29913' => 'din', 'Dinv34580' => 'din', 'Dinv34582' => 'din', 'Dinv44632' => 'din', 'Duzib052G0266' => 'dzi', 'Duzib133G0907' => 'dzi', 'Duzib133G1034' => 'dzi', 'Duzib138G0207' => 'dzi', 'Duzib138G0491' => 'dzi', 'Duzib151G0812' => 'dzi', 'Duzib151G1166' => 'dzi', 'Duzib168G0192' => 'dzi', 'Duzib211G0077' => 'dzi', 'Duzib212G0429' => 'dzi', 'Duzib212G0472' => 'dzi', 'ECA233G2617' => 'eca', 'ECA236G4188' => 'eca', 'ECA240G0936' => 'eca', 'ECA240G1129' => 'eca', 'ECA247G0623' => 'eca', 'EL10Ac5g10451' => 'bvu', 'EL10Ac5g10453' => 'bvu', 'EL10Ac5g10894' => 'bvu', 'Eucgr.H00192' => 'egr', 'Eucgr.H00193' => 'egr', 'Eucgr.H00194' => 'egr', 'Eucgr.J01562' => 'egr', 'Eucgr.K03301' => 'egr', 'FAN02G0632' => 'fan', 'FAN05G5378' => 'fan', 'FAN09G3247' => 'fan', 'FAN12G0435' => 'fan', 'FAN12G2426' => 'fan', 'FAN14G1707' => 'fan', 'FAN14G4725' => 'fan', 'FAN15G2071' => 'fan', 'FAN17G3065' => 'fan', 'FAN19G1376' => 'fan', 'FAN20G0354' => 'fan', 'FAN20G2429' => 'fan', 'FAN20G2658' => 'fan', 'FAN24G2343' => 'fan', 'FAN27G2362' => 'fan', 'FAN28G1765' => 'fan', 'FvH4_1g16020' => 'fve', 'FvH4_2g04890' => 'fve', 'FvH4_2g22270' => 'fve', 'FvH4_4g02630' => 'fve', 'FvH4_4g02640' => 'fve', 'FvH4_6g02650' => 'fve', 'Glyma.02G140600' => 'gma', 'Glyma.03G159900' => 'gma', 'Glyma.05G234800' => 'gma', 'Glyma.07G269600' => 'gma', 'Glyma.08G042300' => 'gma', 'Glyma.10G033500' => 'gma', 'Glyma.10G185200' => 'gma', 'Glyma.17G004300' => 'gma', 'Glyma.19G161900' => 'gma', 'Glyma.20G205100' => 'gma', 'Glyma.20G205200' => 'gma', 'Gohir.A01G139101' => 'ghi', 'Gohir.A02G035600' => 'ghi', 'Gohir.A02G117901' => 'ghi', 'Gohir.A07G210100' => 'ghi', 'Gohir.A07G210200' => 'ghi', 'Gohir.A08G061100' => 'ghi', 'Gohir.A09G223000' => 'ghi', 'Gohir.A09G223100' => 'ghi', 'Gohir.A10G113900' => 'ghi', 'Gohir.A10G114000' => 'ghi', 'Gohir.D02G042300' => 'ghi', 'Gohir.D07G216100' => 'ghi', 'Gohir.D07G216200' => 'ghi', 'Gohir.D08G070400' => 'ghi', 'Gohir.D09G225000' => 'ghi', 'Gohir.D09G225100' => 'ghi', 'Gohir.D10G152300' => 'ghi', 'Gohir.D10G153200' => 'ghi', 'Gohir.D11G133701' => 'ghi', 'Gorai.004G074100' => 'gra', 'Gorai.005G046800' => 'gra', 'Gorai.006G246500' => 'gra', 'Gorai.006G246600' => 'gra', 'Gorai.007G142900' => 'gra', 'Gorai.011G171000' => 'gra', 'Gorai.011G171100' => 'gra', 'Gorai.013G104300' => 'gra', 'Gorai.013G104400' => 'gra', 'GSVIVG01000754001' => 'vvi', 'GSVIVG01000756001' => 'vvi', 'GSVIVG01010903001' => 'vvi', 'GSVIVG01017623001' => 'vvi', 'GSVIVG01018113001' => 'vvi', 'GSVIVG01018116001' => 'vvi', 'GSVIVG01018118001' => 'vvi', 'HanXRQChr03g0076211' => 'han', 'HanXRQChr03g0092431' => 'han', 'HanXRQChr03g0092441' => 'han', 'HanXRQChr03g0092591' => 'han', 'HanXRQChr03g0092671' => 'han', 'HanXRQChr03g0092681' => 'han', 'HanXRQChr03g0092691' => 'han', 'HanXRQChr03g0092701' => 'han', 'HanXRQChr03g0092721' => 'han', 'HanXRQChr03g0092731' => 'han', 'HanXRQChr04g0113681' => 'han', 'HanXRQChr10g0281371' => 'han', 'HanXRQChr11g0337141' => 'han', 'HanXRQChr13g0424521' => 'han', 'HanXRQChr13g0424531' => 'han', 'HanXRQChr13g0424541' => 'han', 'HanXRQChr16g0498221' => 'han', 'Haze_04377' => 'cav', 'Haze_11298' => 'cav', 'Haze_24547' => 'cav', 'Haze_24550' => 'cav', 'Haze_26587' => 'cav', 'Hma1.2p1_0650F.1_g195410' => 'hma', 'Hma1.2p1_0893F.1_g233470' => 'hma', 'HPP92_006508' => 'vpl', 'HPP92_024780' => 'vpl', 'Hund02688' => 'sun', 'Hund09380' => 'sun', 'Hund09381' => 'sun', 'Hund09832' => 'sun', 'Hund09833' => 'sun', 'Hund11351' => 'sun', 'Hund11513' => 'sun', 'Lalb_Chr06g0162591' => 'lal', 'Lalb_Chr06g0162601' => 'lal', 'Lalb_Chr06g0169321' => 'lal', 'Lalb_Chr09g0330951' => 'lal', 'Lalb_Chr16g0387631' => 'lal', 'Lalb_Chr21g0306241' => 'lal', 'Lalb_Chr25g0290051' => 'lal', 'Lalb_Chr25g0290061' => 'lal', 'Lalb_Chr25g0290071' => 'lal', 'Lj1g0003876' => 'lja', 'Lj1P1207T36' => 'lonja', 'Lj2C1156G12' => 'lonja', 'Lj3A793G39' => 'lonja', 'Lj3C580G2' => 'lonja', 'Lj3C780G2' => 'lonja', 'Lj3C780T4' => 'lonja', 'Lj3C793G9' => 'lonja', 'Lj4g0012960' => 'lja', 'Lj5g0021252' => 'lja', 'Lj5g0021484' => 'lja', 'Lj5g0024528' => 'lja', 'Lj6A399T12' => 'lonja', 'Lj6A656G65' => 'lonja', 'Lsat_1_v5_gn_3_125500' => 'lsa', 'Lsat_1_v5_gn_3_125540' => 'lsa', 'Lsat_1_v5_gn_5_72701' => 'lsa', 'Lsat_1_v5_gn_8_91560' => 'lsa', 'Lsat_1_v5_gn_9_9640' => 'lsa', 'Manes.01G200600' => 'mes', 'Manes.01G200700' => 'mes', 'Manes.03G168900' => 'mes', 'Manes.03G169000' => 'mes', 'Manes.05G085801' => 'mes', 'Manes.05G086200' => 'mes', 'Manes.15G036700' => 'mes', 'Manes.15G036900' => 'mes', 'Mapoly0004s0172' => 'mpo', 'Mapoly0023s0001' => 'mpo', 'Mapoly0142s0012' => 'mpo', 'MBI01_g32854_MAGBIO' => 'mbi', 'MBI11_g24427_MAGBIO' => 'mbi', 'MBI11_g47319_MAGBIO' => 'mbi', 'MCO01G433' => 'mco', 'MD00G1187800' => 'mdo', 'MD04G1226500' => 'mdo', 'MD05G1203900' => 'mdo', 'MD10G1191100' => 'mdo', 'MD12G1243500' => 'mdo', 'MD13G1207000' => 'mdo', 'MD13G1207100' => 'mdo', 'MD16G1208600' => 'mdo', 'Medtr1g050352' => 'mtr', 'Medtr1g070385' => 'mtr', 'Medtr1g070450' => 'mtr', 'Medtr1g075200' => 'mtr', 'Medtr1g075250' => 'mtr', 'Medtr1g075260' => 'mtr', 'Medtr1g475250' => 'mtr', 'Medtr4g075450' => 'mtr', 'Medtr7g096300' => 'mtr', 'Medtr8g105110' => 'mtr', 'MELO3C006470.2' => 'cme', 'MELO3C006471.2' => 'cme', 'MELO3C020772.2' => 'cme', 'MELO3C026780.2' => 'cme', 'MELO3C026781.2' => 'cme', 'Migut.D00390' => 'egut', 'Migut.G00435' => 'egut', 'Migut.G00436' => 'egut', 'Migut.G00718' => 'egut', 'MSTRG.21891' => 'ama', 'MSTRG.26910' => 'ama', 'MSTRG.4099' => 'ama', 'MSTRG.9925' => 'ama', 'Nitab4.5_0000165g0010' => 'nta', 'Nitab4.5_0000209g0180' => 'nta', 'Nitab4.5_0000244g0440' => 'nta', 'Nitab4.5_0000525g0220' => 'nta', 'Nitab4.5_0001597g0020' => 'nta', 'Nitab4.5_0001878g0040' => 'nta', 'Nitab4.5_0001878g0060' => 'nta', 'Nitab4.5_0002838g0100' => 'nta', 'Nitab4.5_0002838g0120' => 'nta', 'Nitab4.5_0004798g0030' => 'nta', 'Nitab4.5_0005420g0010' => 'nta', 'Nitab4.5_0005507g0010' => 'nta', 'Nitab4.5_0005574g0020' => 'nta', 'Nitab4.5_0005838g0010' => 'nta', 'Nitab4.5_0010580g0020' => 'nta', 'Nn1g02599' => 'nnu', 'Nn1g02608' => 'nnu', 'Nn3g17742' => 'nnu', 'Nn3g19534' => 'nnu', 'Nn3g19535' => 'nnu', 'Oeu008790.1' => 'oeu', 'Oeu008792.1' => 'oeu', 'Oeu032590.1' => 'oeu', 'Oeu035349.1' => 'oeu', 'Oeu049791.1' => 'oeu', 'Os01g0774500' => 'osa', 'Os03g0628800' => 'osa', 'Os03g0798600' => 'osa', 'Os05g0508800' => 'osa', 'Peaxi162Scf00036g02018' => 'pax', 'Peaxi162Scf00578g00032' => 'pax', 'Peaxi162Scf00578g00317' => 'pax', 'Peaxi162Scf00785g00114' => 'pax', 'Peaxi162Scf00813g00119' => 'pax', 'Peaxi162Scf00906g00227' => 'pax', 'PGR004G0875' => 'pgr', 'PGR004G2424' => 'pgr', 'PGR031G1239' => 'pgr', 'PGR031G2474' => 'pgr', 'PGR044G0423' => 'pgr', 'PGSC0003DMG400001128' => 'stu', 'PGSC0003DMG400007336' => 'stu', 'PGSC0003DMG400016318' => 'stu', 'PGSC0003DMG400016319' => 'stu', 'PGSC0003DMG400018074' => 'stu', 'Phvul.001G157700' => 'pvu', 'Phvul.002G148550' => 'pvu', 'Phvul.002G320200' => 'pvu', 'Phvul.003G089200' => 'pvu', 'Phvul.007G126000' => 'pvu', 'Phvul.007G126100' => 'pvu', 'Phvul.007G178000' => 'pvu', 'Phvul.007G178200' => 'pvu', 'Potri.002G043000' => 'ptr', 'Potri.002G043200' => 'ptr', 'Potri.003G123750' => 'ptr', 'Potri.005G055401' => 'ptr', 'Potri.005G219700' => 'ptr', 'Potri.005G220000' => 'ptr', 'Potri.008G161901' => 'ptr', 'Potri.008G162000' => 'ptr', 'Potri.008G162400' => 'ptr', 'Potri.010G076900' => 'ptr', 'Pp3c12_9180' => 'ppa', 'Pp3c13_19770' => 'ppa', 'Pp3c14_22950' => 'ppa', 'Pp3c16_12160' => 'ppa', 'Pp3c27_7820' => 'ppa', 'Pp3c2_3490' => 'ppa', 'Pp3c3_23700' => 'ppa', 'Pp3c3_36520' => 'ppa', 'Pp3c4_15250' => 'ppa', 'PRCOL_00007002' => 'pco', 'Prupe.1G030600' => 'ppe', 'Prupe.1G030700' => 'ppe', 'Prupe.6G345200' => 'ppe', 'Prupe.8G230300' => 'ppe', 'Prupe.8G230500' => 'ppe', 'Psat3g059600' => 'psa', 'Psat5g200920' => 'psa', 'Psat6g056440' => 'psa', 'Psat6g057360' => 'psa', 'Psat6g134120' => 'psa', 'Psat6g134160' => 'psa', 'Psat7g008640' => 'psa', 'Psat7g185240' => 'psa', 'PSO017G1330' => 'pso', 'PSO063G6097' => 'pso', 'PSO170G0835' => 'pso', 'PSO170G2499' => 'pso', 'PSO210G5058' => 'pso', 'PSO210G6154' => 'pso', 'PSO585G0031' => 'pso', 'PSO832G0264' => 'pso', 'PSO832G4288' => 'pso', 'QL03p027355' => 'qlo', 'QL03p027430' => 'qlo', 'QL04p081380' => 'qlo', 'QL06p015642' => 'qlo', 'QL06p015650' => 'qlo', 'QL06p015686' => 'qlo', 'QL12p042927' => 'qlo', 'QL93p1863_0035' => 'qlo', 'RcHm_v2.0_Chr3g0450581' => 'rch', 'RcHm_v2.0_Chr4g0390371' => 'rch', 'RcHm_v2.0_Chr4g0390381' => 'rch', 'RcHm_v2.0_Chr4g0390491' => 'rch', 'RcHm_v2.0_Chr4g0390501' => 'rch', 'RcHm_v2.0_Chr6g0289231' => 'rch', 'Rhsim04G0190400' => 'rsi', 'Rhsim04G0190500' => 'rsi', 'Rhsim04G0190600' => 'rsi', 'Rhsim13G0031400' => 'rsi', 'Rhsim13G0165600' => 'rsi', 'RhsimUnG0114600' => 'rsi', 'RhsimUnG0114700' => 'rsi', 'Sabra02G0034800' => 'sbr', 'Sabra02G0035100' => 'sbr', 'Sabra05G0168600' => 'sbr', 'Sabra05G0168800' => 'sbr', 'Sabra08G0123700' => 'sbr', 'Sabra10G0031900' => 'sbr', 'Sabra13G0039000' => 'sbr', 'SalBow2G0782' => 'sbo', 'SalBow2G1403' => 'sbo', 'SalBow4G0074' => 'sbo', 'SalBow4G2635' => 'sbo', 'SalBow5G3010' => 'sbo', 'Sc05g0000870' => 'sci', 'Sc05g0000890' => 'sci', 'Sc13g0005000' => 'sci', 'Sc13g0005030' => 'sci', 'Sc19g0003790' => 'sci', 'Sc19g0003800' => 'sci', 'Sed0003467' => 'sed', 'Sed0009355' => 'sed', 'Sed0009894' => 'sed', 'Sed0011972' => 'sed', 'Sed0021483' => 'sed', 'Sed0021750' => 'sed', 'Sed0026279' => 'sed', 'SEGI_05312' => 'sgi', 'SEGI_10112' => 'sgi', 'SEGI_15835' => 'sgi', 'SEGI_30386' => 'sgi', 'SEGI_34122' => 'sgi', 'SEGI_35063' => 'sgi', 'SGA_v2.0_scaffold101G29794' => 'sas', 'SGA_v2.0_scaffold1G00573' => 'sas', 'SGA_v2.0_scaffold79G25637' => 'sas', 'SGA_v2.0_scaffold88G27283' => 'sas', 'SGA_v2.0_scaffold88G27285' => 'sas', 'SGA_v2.0_scaffold88G27331' => 'sas', 'SHI09937' => 'shi', 'SMO119G0302' => 'smo', 'SMO137G0231' => 'smo', 'SMO367G1151' => 'smo', 'Solyc02g082000.3' => 'sly', 'Solyc06g031670.3' => 'sly', 'Solyc06g053810.3' => 'sly', 'Solyc07g025457.1' => 'sly', 'Solyc08g059740.1' => 'sly', 'Solyc08g059750.3' => 'sly', 'Solyc09g083370.3' => 'sly', 'Solyc12g038950.3' => 'sly', 'Sopen02g026630' => 'spe', 'Sopen06g018930' => 'spe', 'Sopen06g018940' => 'spe', 'Sopen08g009460' => 'spe', 'Sopen09g032290' => 'spe', 'Sp1g03080' => 'spa', 'Sp1g03090' => 'spa', 'Sp1g05480' => 'spa', 'Sp2g07860' => 'spa', 'Sp2g08430' => 'spa', 'Sp2g08440' => 'spa', 'Sp2g26200' => 'spa', 'Sp4g13170' => 'spa', 'Sp6g33840' => 'spa', 'SpUn1204_0010' => 'spa', 'TAR365G0908' => 'tar', 'TAR381G1270' => 'tar', 'TAR381G1651' => 'tar', 'TAR625G1131' => 'tar', 'TAR633G0962' => 'tar', 'TAR633G1729' => 'tar', 'TAR633G1864' => 'tar', 'TAR636G0221' => 'tar', 'TAR636G0314' => 'tar', 'TAR636G3202' => 'tar', 'THA.LOC104800805' => 'tha', 'THA.LOC104801096' => 'tha', 'THA.LOC104801555' => 'tha', 'THA.LOC104808491' => 'tha', 'THA.LOC104808595' => 'tha', 'THA.LOC104815985' => 'tha', 'THA.LOC104822250' => 'tha', 'THA.LOC104826071' => 'tha', 'Thecc.01G265200' => 'tca', 'Thecc.01G265300' => 'tca', 'Thecc.01G265700' => 'tca', 'Thecc.03G109100' => 'tca', 'Thecc.04G245900' => 'tca', 'Thecc.04G246000' => 'tca', 'Thhalv10003334m.g' => 'esa', 'Thhalv10005508m.g' => 'esa', 'Thhalv10005643m.g' => 'esa', 'Thhalv10007316m.g' => 'esa', 'Thhalv10009006m.g' => 'esa', 'Thhalv10009309m.g' => 'esa', 'Thhalv10014917m.g' => 'esa', 'Thhalv10014919m.g' => 'esa', 'Thhalv10015393m.g' => 'esa', 'Thhalv10016515m.g' => 'esa', 'Thhalv10029242m.g' => 'esa', 'TPR.G16654' => 'tpr', 'TPR.G20589' => 'tpr', 'TPR.G23029' => 'tpr', 'TPR.G27731' => 'tpr', 'TPR.G28889' => 'tpr', 'TPR.G28899' => 'tpr', 'TPR.G30846' => 'tpr', 'TPR.G5452' => 'tpr', 'TPR.G5713' => 'tpr', 'TPR.G9046' => 'tpr', 'TPR.G9061' => 'tpr', 'TWI09G1075' => 'twi', 'TWI12G0806' => 'twi', 'TWI18G0108' => 'twi', 'TWI53G1361' => 'twi', 'TWI73G0185' => 'twi', 'TWI73G0427' => 'twi', 'unitig_37.g12001' => 'ugi', 'unitig_747.g21660' => 'ugi', 'unitig_748.g7232' => 'ugi', 'unitig_748.g7315' => 'ugi', 'unitig_85.g27262' => 'ugi', 'unitig_92.g28220' => 'ugi', 'vmacro02632' => 'vma', 'vmacro08410' => 'vma', 'vmacro08411' => 'vma', 'vmacro15407' => 'vma', 'VMungo0251G3619' => 'vmu', 'VMungo0720G1204' => 'vmu', 'VMungo0720G1918' => 'vmu', 'VMungo0720G2387' => 'vmu', 'VMungo0720G2961' => 'vmu', 'VMungo1215G2154' => 'vmu', 'VMungo1383G2411' => 'vmu', 'Zm00001eb051130' => 'zma', 'Zm00001eb116830' => 'zma', 'Zm00001eb116850' => 'zma', 'Zm00001eb151740' => 'zma', 'Zm00001eb292360' => 'zma', 'Zm00001eb301640' => 'zma' ), 'gf_id' => 'HOM05D000856', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000856' ), 'data_identifier' => 'HOM05D000856', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000856', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p00010' => 'bna', 'A03p04160' => 'bna', 'A03p17160' => 'bna', 'A04p23370' => 'bna', 'A05p14860' => 'bna', 'A08p37020' => 'bna', 'A09p08050' => 'bna', 'A09p66800' => 'bna', 'A09p67940' => 'bna', 'A10p02680' => 'bna', 'A10p05320' => 'bna', 'Aa31LG1G20560' => 'aar', 'Aa31LG1G20610' => 'aar', 'Aa31LG1G7810' => 'aar', 'Aa31LG5G3590' => 'aar', 'Aa31LG5G6140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3819' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4683' => 'aag', 'Actinidia04480' => 'ach', 'Actinidia05466' => 'ach', 'Actinidia08445' => 'ach', 'Actinidia21170' => 'ach', 'Actinidia24812' => 'ach', 'Actinidia24951' => 'ach', 'Actinidia40088' => 'ach', 'Ah.02g111660' => 'amhyb', 'Ah.11g048900' => 'amhyb', 'Ah.11g049910' => 'amhyb', 'AL1G13870' => 'aly', 'AL1G13880' => 'aly', 'AL1G16760' => 'aly', 'AL390U10020' => 'aly', 'AL4G25520' => 'aly', 'AL6G19890' => 'aly', 'AL6G19900' => 'aly', 'AL6G19910' => 'aly', 'AL8G40100' => 'aly', 'Aqoxy2G03562' => 'aox', 'Aqoxy5G00316' => 'aox', 'Aqoxy5G00926' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1628KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1H403S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2FU6SJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.882I6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8YRY2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YN1SN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AF70II' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZA8L1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F916KL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHRD8H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KTZ8QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S22EMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8M29T' => 'arhy', 'AT1G04270' => 'ath', 'AT1G04280' => 'ath', 'AT1G06750' => 'ath', 'AT1G33850' => 'ath', 'AT2G30630' => 'ath', 'AT5G09490' => 'ath', 'AT5G09500' => 'ath', 'AT5G09510' => 'ath', 'AT5G43640' => 'ath', 'AT5G63070' => 'ath', 'ATR0605G315' => 'atr', 'Atru.chr11.175' => 'acertr', 'Atru.chr11.653' => 'acertr', 'Atru.chr3.1616' => 'acertr', 'Atru.chr4.2230' => 'acertr', 'Atru.chr4.2232' => 'acertr', 'Atru.chr5.1598' => 'acertr', 'Atru.chr5.1600' => 'acertr', 'Atru.chr5.2188' => 'acertr', 'AUR62008326' => 'cqu', 'AUR62011922' => 'cqu', 'AUR62011924' => 'cqu', 'AUR62021771' => 'cqu', 'AUR62032237' => 'cqu', 'AUR62032240' => 'cqu', 'BcaB01g05572' => 'bca', 'BcaB02g10337' => 'bca', 'BcaB04g19944' => 'bca', 'BcaB05g21548' => 'bca', 'BcaB05g21549' => 'bca', 'BcaB05g23227' => 'bca', 'BcaB06g26256' => 'bca', 'BcaB06g26257' => 'bca', 'BcaB06g28379' => 'bca', 'BcaC02g11159' => 'bca', 'BcaC03g13258' => 'bca', 'BcaC03g13259' => 'bca', 'BcaC05g24456' => 'bca', 'BcaC05g24457' => 'bca', 'BcaC07g36922' => 'bca', 'BcaC07g36923' => 'bca', 'BcaC07g42050' => 'bca', 'BcaC07g42176' => 'bca', 'BcaC07g42195' => 'bca', 'BcaC07g42196' => 'bca', 'BcaNung06674' => 'bca', 'BolC2t06351H' => 'bol', 'BolC2t06352H' => 'bol', 'BolC3t12993H' => 'bol', 'BolC4t23525H' => 'bol', 'BolC4t27475H' => 'bol', 'BolC5t29025H' => 'bol', 'BolC5t29026H' => 'bol', 'BolC8t46898H' => 'bol', 'BolC8t46899H' => 'bol', 'BolC8t52630H' => 'bol', 'BolC8t52765H' => 'bol', 'BolC9t53824H' => 'bol', 'BraA03t09760Z' => 'bra', 'BraA03t10990Z' => 'bra', 'BraA05t20413Z' => 'bra', 'BraA08t35602Z' => 'bra', 'BraA09t36458Z' => 'bra', 'BraA09t42018Z' => 'bra', 'BraA09t42129Z' => 'bra', 'BraA10t42536Z' => 'bra', 'BraA10t42537Z' => 'bra', 'C01p10690' => 'bna', 'C02p03890' => 'bna', 'C02p03900' => 'bna', 'C03p04620' => 'bna', 'C04p19870' => 'bna', 'C04p59670' => 'bna', 'C05p02460' => 'bna', 'C05p02470' => 'bna', 'C08p00980' => 'bna', 'C08p00990' => 'bna', 'C08p51030' => 'bna', 'C08p52360' => 'bna', 'C09p09120' => 'bna', 'CAN.G19.15' => 'can', 'CAN.G251.10' => 'can', 'CAN.G251.9' => 'can', 'CAN.G398.24' => 'can', 'CAN.G410.32' => 'can', 'CAN.G881.2' => 'can', 'CANSAT01G3025' => 'cansat', 'CANSAT78G1211' => 'cansat', 'CANSAT78G1218' => 'cansat', 'CANSAT78G1521' => 'cansat', 'CANSAT78G1670' => 'cansat', 'CARHR003600' => 'chi', 'CARHR003610' => 'chi', 'CARHR006290' => 'chi', 'CARHR006430' => 'chi', 'CARHR124110' => 'chi', 'CARHR203870' => 'chi', 'CARHR203880' => 'chi', 'CARHR203890' => 'chi', 'CARHR276880' => 'chi', 'Carub.0001s0346' => 'cru', 'Carub.0001s0347' => 'cru', 'Carub.0001s0607' => 'cru', 'Carub.0003s2768' => 'cru', 'Carub.0003s2769' => 'cru', 'Carub.0004s1178' => 'cru', 'Carub.0006s0806' => 'cru', 'Carub.0006s0807' => 'cru', 'Carub.0006s0808' => 'cru', 'Carub.0008s0501' => 'cru', 'Carub.0008s2379' => 'cru', 'Ca_08655_v3' => 'car', 'Ca_08922_v3' => 'car', 'Ca_08923_v3' => 'car', 'Ca_09119_v3' => 'car', 'Ca_09703_v3' => 'car', 'Ca_09705_v3' => 'car', 'Ca_09835_v3' => 'car', 'Ca_26403_v3' => 'car', 'Ca_30719_v3' => 'car', 'CBR_g17958' => 'cbr', 'CBR_g40516' => 'cbr', 'Cc00_g05350' => 'ccan', 'Cc01_g18690' => 'ccan', 'Cc03_g04830' => 'ccan', 'Cc03_g04850' => 'ccan', 'CDE02G4469' => 'cde', 'CDE06G0883' => 'cde', 'CDE06G1295' => 'cde', 'CDE06G1390' => 'cde', 'CDE07G0584' => 'cde', 'CDE07G1084' => 'cde', 'CDE08G1259' => 'cde', 'Cfa002341' => 'cfa', 'Cfa024337' => 'cfa', 'Ciclev10004749m.g' => 'ccl', 'Ciclev10006127m.g' => 'ccl', 'Ciclev10019720m.g' => 'ccl', 'Ciclev10022652m.g' => 'ccl', 'CiPaw.01G190400' => 'cil', 'CiPaw.01G190500' => 'cil', 'CiPaw.02G116400' => 'cil', 'CiPaw.02G116500' => 'cil', 'CiPaw.04G183000' => 'cil', 'CiPaw.04G183300' => 'cil', 'ClCG05G004610' => 'cla', 'ClCG05G004620' => 'cla', 'ClCG06G006730' => 'cla', 'ClCG06G006740' => 'cla', 'ClCG11G003690' => 'cla', 'COL.COLO4_08276' => 'col', 'COL.COLO4_08277' => 'col', 'COL.COLO4_15787' => 'col', 'COL.COLO4_15789' => 'col', 'Cpa.g.c44815' => 'cpa', 'Cpa.g.sc52.144' => 'cpa', 'Cpa.g.sc58.46' => 'cpa', 'Cpa.g.sc58.47' => 'cpa', 'Cre08.g360900' => 'cre', 'CsaV3_2G013030' => 'csa', 'CsaV3_2G013050' => 'csa', 'CsaV3_2G015620' => 'csa', 'CsaV3_3G012590' => 'csa', 'CsaV3_3G012600' => 'csa', 'CSS0001641' => 'camsi', 'CSS0008310' => 'camsi', 'CSS0013011' => 'camsi', 'CSS0017147' => 'camsi', 'CSS0022970' => 'camsi', 'CSS0025655' => 'camsi', 'CSS0028665' => 'camsi', 'CSS0029117' => 'camsi', 'CSS0032024' => 'camsi', 'CSS0039681' => 'camsi', 'CSS0046516' => 'camsi', 'CSS0050307' => 'camsi', 'DCAR_005871' => 'dca', 'DCAR_007342' => 'dca', 'DCAR_024228' => 'dca', 'DCAR_027277' => 'dca', 'DCAR_030718' => 'dca', 'Dinv20287' => 'din', 'Dinv22461' => 'din', 'Dinv22464' => 'din', 'Dinv29912' => 'din', 'Dinv29913' => 'din', 'Dinv34580' => 'din', 'Dinv34582' => 'din', 'Dinv44632' => 'din', 'Duzib052G0266' => 'dzi', 'Duzib133G0907' => 'dzi', 'Duzib133G1034' => 'dzi', 'Duzib138G0207' => 'dzi', 'Duzib138G0491' => 'dzi', 'Duzib151G0812' => 'dzi', 'Duzib151G1166' => 'dzi', 'Duzib168G0192' => 'dzi', 'Duzib211G0077' => 'dzi', 'Duzib212G0429' => 'dzi', 'Duzib212G0472' => 'dzi', 'ECA233G2617' => 'eca', 'ECA236G4188' => 'eca', 'ECA240G0936' => 'eca', 'ECA240G1129' => 'eca', 'ECA247G0623' => 'eca', 'EL10Ac5g10451' => 'bvu', 'EL10Ac5g10453' => 'bvu', 'EL10Ac5g10894' => 'bvu', 'Eucgr.H00192' => 'egr', 'Eucgr.H00193' => 'egr', 'Eucgr.H00194' => 'egr', 'Eucgr.J01562' => 'egr', 'Eucgr.K03301' => 'egr', 'FAN02G0632' => 'fan', 'FAN05G5378' => 'fan', 'FAN09G3247' => 'fan', 'FAN12G0435' => 'fan', 'FAN12G2426' => 'fan', 'FAN14G1707' => 'fan', 'FAN14G4725' => 'fan', 'FAN15G2071' => 'fan', 'FAN17G3065' => 'fan', 'FAN19G1376' => 'fan', 'FAN20G0354' => 'fan', 'FAN20G2429' => 'fan', 'FAN20G2658' => 'fan', 'FAN24G2343' => 'fan', 'FAN27G2362' => 'fan', 'FAN28G1765' => 'fan', 'FvH4_1g16020' => 'fve', 'FvH4_2g04890' => 'fve', 'FvH4_2g22270' => 'fve', 'FvH4_4g02630' => 'fve', 'FvH4_4g02640' => 'fve', 'FvH4_6g02650' => 'fve', 'Glyma.02G140600' => 'gma', 'Glyma.03G159900' => 'gma', 'Glyma.05G234800' => 'gma', 'Glyma.07G269600' => 'gma', 'Glyma.08G042300' => 'gma', 'Glyma.10G033500' => 'gma', 'Glyma.10G185200' => 'gma', 'Glyma.17G004300' => 'gma', 'Glyma.19G161900' => 'gma', 'Glyma.20G205100' => 'gma', 'Glyma.20G205200' => 'gma', 'Gohir.A01G139101' => 'ghi', 'Gohir.A02G035600' => 'ghi', 'Gohir.A02G117901' => 'ghi', 'Gohir.A07G210100' => 'ghi', 'Gohir.A07G210200' => 'ghi', 'Gohir.A08G061100' => 'ghi', 'Gohir.A09G223000' => 'ghi', 'Gohir.A09G223100' => 'ghi', 'Gohir.A10G113900' => 'ghi', 'Gohir.A10G114000' => 'ghi', 'Gohir.D02G042300' => 'ghi', 'Gohir.D07G216100' => 'ghi', 'Gohir.D07G216200' => 'ghi', 'Gohir.D08G070400' => 'ghi', 'Gohir.D09G225000' => 'ghi', 'Gohir.D09G225100' => 'ghi', 'Gohir.D10G152300' => 'ghi', 'Gohir.D10G153200' => 'ghi', 'Gohir.D11G133701' => 'ghi', 'Gorai.004G074100' => 'gra', 'Gorai.005G046800' => 'gra', 'Gorai.006G246500' => 'gra', 'Gorai.006G246600' => 'gra', 'Gorai.007G142900' => 'gra', 'Gorai.011G171000' => 'gra', 'Gorai.011G171100' => 'gra', 'Gorai.013G104300' => 'gra', 'Gorai.013G104400' => 'gra', 'GSVIVG01000754001' => 'vvi', 'GSVIVG01000756001' => 'vvi', 'GSVIVG01010903001' => 'vvi', 'GSVIVG01017623001' => 'vvi', 'GSVIVG01018113001' => 'vvi', 'GSVIVG01018116001' => 'vvi', 'GSVIVG01018118001' => 'vvi', 'HanXRQChr03g0076211' => 'han', 'HanXRQChr03g0092431' => 'han', 'HanXRQChr03g0092441' => 'han', 'HanXRQChr03g0092591' => 'han', 'HanXRQChr03g0092671' => 'han', 'HanXRQChr03g0092681' => 'han', 'HanXRQChr03g0092691' => 'han', 'HanXRQChr03g0092701' => 'han', 'HanXRQChr03g0092721' => 'han', 'HanXRQChr03g0092731' => 'han', 'HanXRQChr04g0113681' => 'han', 'HanXRQChr10g0281371' => 'han', 'HanXRQChr11g0337141' => 'han', 'HanXRQChr13g0424521' => 'han', 'HanXRQChr13g0424531' => 'han', 'HanXRQChr13g0424541' => 'han', 'HanXRQChr16g0498221' => 'han', 'Haze_04377' => 'cav', 'Haze_11298' => 'cav', 'Haze_24547' => 'cav', 'Haze_24550' => 'cav', 'Haze_26587' => 'cav', 'Hma1.2p1_0650F.1_g195410' => 'hma', 'Hma1.2p1_0893F.1_g233470' => 'hma', 'HPP92_006508' => 'vpl', 'HPP92_024780' => 'vpl', 'Hund02688' => 'sun', 'Hund09380' => 'sun', 'Hund09381' => 'sun', 'Hund09832' => 'sun', 'Hund09833' => 'sun', 'Hund11351' => 'sun', 'Hund11513' => 'sun', 'Lalb_Chr06g0162591' => 'lal', 'Lalb_Chr06g0162601' => 'lal', 'Lalb_Chr06g0169321' => 'lal', 'Lalb_Chr09g0330951' => 'lal', 'Lalb_Chr16g0387631' => 'lal', 'Lalb_Chr21g0306241' => 'lal', 'Lalb_Chr25g0290051' => 'lal', 'Lalb_Chr25g0290061' => 'lal', 'Lalb_Chr25g0290071' => 'lal', 'Lj1g0003876' => 'lja', 'Lj1P1207T36' => 'lonja', 'Lj2C1156G12' => 'lonja', 'Lj3A793G39' => 'lonja', 'Lj3C580G2' => 'lonja', 'Lj3C780G2' => 'lonja', 'Lj3C780T4' => 'lonja', 'Lj3C793G9' => 'lonja', 'Lj4g0012960' => 'lja', 'Lj5g0021252' => 'lja', 'Lj5g0021484' => 'lja', 'Lj5g0024528' => 'lja', 'Lj6A399T12' => 'lonja', 'Lj6A656G65' => 'lonja', 'Lsat_1_v5_gn_3_125500' => 'lsa', 'Lsat_1_v5_gn_3_125540' => 'lsa', 'Lsat_1_v5_gn_5_72701' => 'lsa', 'Lsat_1_v5_gn_8_91560' => 'lsa', 'Lsat_1_v5_gn_9_9640' => 'lsa', 'Manes.01G200600' => 'mes', 'Manes.01G200700' => 'mes', 'Manes.03G168900' => 'mes', 'Manes.03G169000' => 'mes', 'Manes.05G085801' => 'mes', 'Manes.05G086200' => 'mes', 'Manes.15G036700' => 'mes', 'Manes.15G036900' => 'mes', 'Mapoly0004s0172' => 'mpo', 'Mapoly0023s0001' => 'mpo', 'Mapoly0142s0012' => 'mpo', 'MBI01_g32854_MAGBIO' => 'mbi', 'MBI11_g24427_MAGBIO' => 'mbi', 'MBI11_g47319_MAGBIO' => 'mbi', 'MCO01G433' => 'mco', 'MD00G1187800' => 'mdo', 'MD04G1226500' => 'mdo', 'MD05G1203900' => 'mdo', 'MD10G1191100' => 'mdo', 'MD12G1243500' => 'mdo', 'MD13G1207000' => 'mdo', 'MD13G1207100' => 'mdo', 'MD16G1208600' => 'mdo', 'Medtr1g050352' => 'mtr', 'Medtr1g070385' => 'mtr', 'Medtr1g070450' => 'mtr', 'Medtr1g075200' => 'mtr', 'Medtr1g075250' => 'mtr', 'Medtr1g075260' => 'mtr', 'Medtr1g475250' => 'mtr', 'Medtr4g075450' => 'mtr', 'Medtr7g096300' => 'mtr', 'Medtr8g105110' => 'mtr', 'MELO3C006470.2' => 'cme', 'MELO3C006471.2' => 'cme', 'MELO3C020772.2' => 'cme', 'MELO3C026780.2' => 'cme', 'MELO3C026781.2' => 'cme', 'Migut.D00390' => 'egut', 'Migut.G00435' => 'egut', 'Migut.G00436' => 'egut', 'Migut.G00718' => 'egut', 'MSTRG.21891' => 'ama', 'MSTRG.26910' => 'ama', 'MSTRG.4099' => 'ama', 'MSTRG.9925' => 'ama', 'Nitab4.5_0000165g0010' => 'nta', 'Nitab4.5_0000209g0180' => 'nta', 'Nitab4.5_0000244g0440' => 'nta', 'Nitab4.5_0000525g0220' => 'nta', 'Nitab4.5_0001597g0020' => 'nta', 'Nitab4.5_0001878g0040' => 'nta', 'Nitab4.5_0001878g0060' => 'nta', 'Nitab4.5_0002838g0100' => 'nta', 'Nitab4.5_0002838g0120' => 'nta', 'Nitab4.5_0004798g0030' => 'nta', 'Nitab4.5_0005420g0010' => 'nta', 'Nitab4.5_0005507g0010' => 'nta', 'Nitab4.5_0005574g0020' => 'nta', 'Nitab4.5_0005838g0010' => 'nta', 'Nitab4.5_0010580g0020' => 'nta', 'Nn1g02599' => 'nnu', 'Nn1g02608' => 'nnu', 'Nn3g17742' => 'nnu', 'Nn3g19534' => 'nnu', 'Nn3g19535' => 'nnu', 'Oeu008790.1' => 'oeu', 'Oeu008792.1' => 'oeu', 'Oeu032590.1' => 'oeu', 'Oeu035349.1' => 'oeu', 'Oeu049791.1' => 'oeu', 'Os01g0774500' => 'osa', 'Os03g0628800' => 'osa', 'Os03g0798600' => 'osa', 'Os05g0508800' => 'osa', 'Peaxi162Scf00036g02018' => 'pax', 'Peaxi162Scf00578g00032' => 'pax', 'Peaxi162Scf00578g00317' => 'pax', 'Peaxi162Scf00785g00114' => 'pax', 'Peaxi162Scf00813g00119' => 'pax', 'Peaxi162Scf00906g00227' => 'pax', 'PGR004G0875' => 'pgr', 'PGR004G2424' => 'pgr', 'PGR031G1239' => 'pgr', 'PGR031G2474' => 'pgr', 'PGR044G0423' => 'pgr', 'PGSC0003DMG400001128' => 'stu', 'PGSC0003DMG400007336' => 'stu', 'PGSC0003DMG400016318' => 'stu', 'PGSC0003DMG400016319' => 'stu', 'PGSC0003DMG400018074' => 'stu', 'Phvul.001G157700' => 'pvu', 'Phvul.002G148550' => 'pvu', 'Phvul.002G320200' => 'pvu', 'Phvul.003G089200' => 'pvu', 'Phvul.007G126000' => 'pvu', 'Phvul.007G126100' => 'pvu', 'Phvul.007G178000' => 'pvu', 'Phvul.007G178200' => 'pvu', 'Potri.002G043000' => 'ptr', 'Potri.002G043200' => 'ptr', 'Potri.003G123750' => 'ptr', 'Potri.005G055401' => 'ptr', 'Potri.005G219700' => 'ptr', 'Potri.005G220000' => 'ptr', 'Potri.008G161901' => 'ptr', 'Potri.008G162000' => 'ptr', 'Potri.008G162400' => 'ptr', 'Potri.010G076900' => 'ptr', 'Pp3c12_9180' => 'ppa', 'Pp3c13_19770' => 'ppa', 'Pp3c14_22950' => 'ppa', 'Pp3c16_12160' => 'ppa', 'Pp3c27_7820' => 'ppa', 'Pp3c2_3490' => 'ppa', 'Pp3c3_23700' => 'ppa', 'Pp3c3_36520' => 'ppa', 'Pp3c4_15250' => 'ppa', 'PRCOL_00007002' => 'pco', 'Prupe.1G030600' => 'ppe', 'Prupe.1G030700' => 'ppe', 'Prupe.6G345200' => 'ppe', 'Prupe.8G230300' => 'ppe', 'Prupe.8G230500' => 'ppe', 'Psat3g059600' => 'psa', 'Psat5g200920' => 'psa', 'Psat6g056440' => 'psa', 'Psat6g057360' => 'psa', 'Psat6g134120' => 'psa', 'Psat6g134160' => 'psa', 'Psat7g008640' => 'psa', 'Psat7g185240' => 'psa', 'PSO017G1330' => 'pso', 'PSO063G6097' => 'pso', 'PSO170G0835' => 'pso', 'PSO170G2499' => 'pso', 'PSO210G5058' => 'pso', 'PSO210G6154' => 'pso', 'PSO585G0031' => 'pso', 'PSO832G0264' => 'pso', 'PSO832G4288' => 'pso', 'QL03p027355' => 'qlo', 'QL03p027430' => 'qlo', 'QL04p081380' => 'qlo', 'QL06p015642' => 'qlo', 'QL06p015650' => 'qlo', 'QL06p015686' => 'qlo', 'QL12p042927' => 'qlo', 'QL93p1863_0035' => 'qlo', 'RcHm_v2.0_Chr3g0450581' => 'rch', 'RcHm_v2.0_Chr4g0390371' => 'rch', 'RcHm_v2.0_Chr4g0390381' => 'rch', 'RcHm_v2.0_Chr4g0390491' => 'rch', 'RcHm_v2.0_Chr4g0390501' => 'rch', 'RcHm_v2.0_Chr6g0289231' => 'rch', 'Rhsim04G0190400' => 'rsi', 'Rhsim04G0190500' => 'rsi', 'Rhsim04G0190600' => 'rsi', 'Rhsim13G0031400' => 'rsi', 'Rhsim13G0165600' => 'rsi', 'RhsimUnG0114600' => 'rsi', 'RhsimUnG0114700' => 'rsi', 'Sabra02G0034800' => 'sbr', 'Sabra02G0035100' => 'sbr', 'Sabra05G0168600' => 'sbr', 'Sabra05G0168800' => 'sbr', 'Sabra08G0123700' => 'sbr', 'Sabra10G0031900' => 'sbr', 'Sabra13G0039000' => 'sbr', 'SalBow2G0782' => 'sbo', 'SalBow2G1403' => 'sbo', 'SalBow4G0074' => 'sbo', 'SalBow4G2635' => 'sbo', 'SalBow5G3010' => 'sbo', 'Sc05g0000870' => 'sci', 'Sc05g0000890' => 'sci', 'Sc13g0005000' => 'sci', 'Sc13g0005030' => 'sci', 'Sc19g0003790' => 'sci', 'Sc19g0003800' => 'sci', 'Sed0003467' => 'sed', 'Sed0009355' => 'sed', 'Sed0009894' => 'sed', 'Sed0011972' => 'sed', 'Sed0021483' => 'sed', 'Sed0021750' => 'sed', 'Sed0026279' => 'sed', 'SEGI_05312' => 'sgi', 'SEGI_10112' => 'sgi', 'SEGI_15835' => 'sgi', 'SEGI_30386' => 'sgi', 'SEGI_34122' => 'sgi', 'SEGI_35063' => 'sgi', 'SGA_v2.0_scaffold101G29794' => 'sas', 'SGA_v2.0_scaffold1G00573' => 'sas', 'SGA_v2.0_scaffold79G25637' => 'sas', 'SGA_v2.0_scaffold88G27283' => 'sas', 'SGA_v2.0_scaffold88G27285' => 'sas', 'SGA_v2.0_scaffold88G27331' => 'sas', 'SHI09937' => 'shi', 'SMO119G0302' => 'smo', 'SMO137G0231' => 'smo', 'SMO367G1151' => 'smo', 'Solyc02g082000.3' => 'sly', 'Solyc06g031670.3' => 'sly', 'Solyc06g053810.3' => 'sly', 'Solyc07g025457.1' => 'sly', 'Solyc08g059740.1' => 'sly', 'Solyc08g059750.3' => 'sly', 'Solyc09g083370.3' => 'sly', 'Solyc12g038950.3' => 'sly', 'Sopen02g026630' => 'spe', 'Sopen06g018930' => 'spe', 'Sopen06g018940' => 'spe', 'Sopen08g009460' => 'spe', 'Sopen09g032290' => 'spe', 'Sp1g03080' => 'spa', 'Sp1g03090' => 'spa', 'Sp1g05480' => 'spa', 'Sp2g07860' => 'spa', 'Sp2g08430' => 'spa', 'Sp2g08440' => 'spa', 'Sp2g26200' => 'spa', 'Sp4g13170' => 'spa', 'Sp6g33840' => 'spa', 'SpUn1204_0010' => 'spa', 'TAR365G0908' => 'tar', 'TAR381G1270' => 'tar', 'TAR381G1651' => 'tar', 'TAR625G1131' => 'tar', 'TAR633G0962' => 'tar', 'TAR633G1729' => 'tar', 'TAR633G1864' => 'tar', 'TAR636G0221' => 'tar', 'TAR636G0314' => 'tar', 'TAR636G3202' => 'tar', 'THA.LOC104800805' => 'tha', 'THA.LOC104801096' => 'tha', 'THA.LOC104801555' => 'tha', 'THA.LOC104808491' => 'tha', 'THA.LOC104808595' => 'tha', 'THA.LOC104815985' => 'tha', 'THA.LOC104822250' => 'tha', 'THA.LOC104826071' => 'tha', 'Thecc.01G265200' => 'tca', 'Thecc.01G265300' => 'tca', 'Thecc.01G265700' => 'tca', 'Thecc.03G109100' => 'tca', 'Thecc.04G245900' => 'tca', 'Thecc.04G246000' => 'tca', 'Thhalv10003334m.g' => 'esa', 'Thhalv10005508m.g' => 'esa', 'Thhalv10005643m.g' => 'esa', 'Thhalv10007316m.g' => 'esa', 'Thhalv10009006m.g' => 'esa', 'Thhalv10009309m.g' => 'esa', 'Thhalv10014917m.g' => 'esa', 'Thhalv10014919m.g' => 'esa', 'Thhalv10015393m.g' => 'esa', 'Thhalv10016515m.g' => 'esa', 'Thhalv10029242m.g' => 'esa', 'TPR.G16654' => 'tpr', 'TPR.G20589' => 'tpr', 'TPR.G23029' => 'tpr', 'TPR.G27731' => 'tpr', 'TPR.G28889' => 'tpr', 'TPR.G28899' => 'tpr', 'TPR.G30846' => 'tpr', 'TPR.G5452' => 'tpr', 'TPR.G5713' => 'tpr', 'TPR.G9046' => 'tpr', 'TPR.G9061' => 'tpr', 'TWI09G1075' => 'twi', 'TWI12G0806' => 'twi', 'TWI18G0108' => 'twi', 'TWI53G1361' => 'twi', 'TWI73G0185' => 'twi', 'TWI73G0427' => 'twi', 'unitig_37.g12001' => 'ugi', 'unitig_747.g21660' => 'ugi', 'unitig_748.g7232' => 'ugi', 'unitig_748.g7315' => 'ugi', 'unitig_85.g27262' => 'ugi', 'unitig_92.g28220' => 'ugi', 'vmacro02632' => 'vma', 'vmacro08410' => 'vma', 'vmacro08411' => 'vma', 'vmacro15407' => 'vma', 'VMungo0251G3619' => 'vmu', 'VMungo0720G1204' => 'vmu', 'VMungo0720G1918' => 'vmu', 'VMungo0720G2387' => 'vmu', 'VMungo0720G2961' => 'vmu', 'VMungo1215G2154' => 'vmu', 'VMungo1383G2411' => 'vmu', 'Zm00001eb051130' => 'zma', 'Zm00001eb116830' => 'zma', 'Zm00001eb116850' => 'zma', 'Zm00001eb151740' => 'zma', 'Zm00001eb292360' => 'zma', 'Zm00001eb301640' => 'zma' ) $gf_id = 'HOM05D000856' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000856' ) $data_identifier = 'HOM05D000856' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 13, 'ath' => (int) 10, 'atr' => (int) 1, 'acertr' => (int) 8, 'cqu' => (int) 6, 'bca' => (int) 21, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 11, 'car' => (int) 9, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 8, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 5, 'fan' => (int) 16, 'fve' => (int) 6, 'gma' => (int) 11, 'ghi' => (int) 19, 'gra' => (int) 9, 'vvi' => (int) 7, 'han' => (int) 17, 'cav' => (int) 5, 'hma' => (int) 2, 'vpl' => (int) 2, 'sun' => (int) 7, 'lal' => (int) 9, 'lja' => (int) 5, 'lonja' => (int) 9, 'lsa' => (int) 5, 'mes' => (int) 8, 'mpo' => (int) 3, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 10, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 15, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 9, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 9, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 6, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 5, 'spa' => (int) 10, 'tar' => (int) 10, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 11, 'tpr' => (int) 11, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 4, 'vmu' => (int) 7, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb301640' $species_info = array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ) $local_species = 'sun' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000856', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p00010' => 'bna', 'A03p04160' => 'bna', 'A03p17160' => 'bna', 'A04p23370' => 'bna', 'A05p14860' => 'bna', 'A08p37020' => 'bna', 'A09p08050' => 'bna', 'A09p66800' => 'bna', 'A09p67940' => 'bna', 'A10p02680' => 'bna', 'A10p05320' => 'bna', 'Aa31LG1G20560' => 'aar', 'Aa31LG1G20610' => 'aar', 'Aa31LG1G7810' => 'aar', 'Aa31LG5G3590' => 'aar', 'Aa31LG5G6140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3819' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4683' => 'aag', 'Actinidia04480' => 'ach', 'Actinidia05466' => 'ach', 'Actinidia08445' => 'ach', 'Actinidia21170' => 'ach', 'Actinidia24812' => 'ach', 'Actinidia24951' => 'ach', 'Actinidia40088' => 'ach', 'Ah.02g111660' => 'amhyb', 'Ah.11g048900' => 'amhyb', 'Ah.11g049910' => 'amhyb', 'AL1G13870' => 'aly', 'AL1G13880' => 'aly', 'AL1G16760' => 'aly', 'AL390U10020' => 'aly', 'AL4G25520' => 'aly', 'AL6G19890' => 'aly', 'AL6G19900' => 'aly', 'AL6G19910' => 'aly', 'AL8G40100' => 'aly', 'Aqoxy2G03562' => 'aox', 'Aqoxy5G00316' => 'aox', 'Aqoxy5G00926' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1628KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1H403S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2FU6SJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.882I6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8YRY2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YN1SN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AF70II' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZA8L1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F916KL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHRD8H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KTZ8QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S22EMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8M29T' => 'arhy', 'AT1G04270' => 'ath', 'AT1G04280' => 'ath', 'AT1G06750' => 'ath', 'AT1G33850' => 'ath', 'AT2G30630' => 'ath', 'AT5G09490' => 'ath', 'AT5G09500' => 'ath', 'AT5G09510' => 'ath', 'AT5G43640' => 'ath', 'AT5G63070' => 'ath', 'ATR0605G315' => 'atr', 'Atru.chr11.175' => 'acertr', 'Atru.chr11.653' => 'acertr', 'Atru.chr3.1616' => 'acertr', 'Atru.chr4.2230' => 'acertr', 'Atru.chr4.2232' => 'acertr', 'Atru.chr5.1598' => 'acertr', 'Atru.chr5.1600' => 'acertr', 'Atru.chr5.2188' => 'acertr', 'AUR62008326' => 'cqu', 'AUR62011922' => 'cqu', 'AUR62011924' => 'cqu', 'AUR62021771' => 'cqu', 'AUR62032237' => 'cqu', 'AUR62032240' => 'cqu', 'BcaB01g05572' => 'bca', 'BcaB02g10337' => 'bca', 'BcaB04g19944' => 'bca', 'BcaB05g21548' => 'bca', 'BcaB05g21549' => 'bca', 'BcaB05g23227' => 'bca', 'BcaB06g26256' => 'bca', 'BcaB06g26257' => 'bca', 'BcaB06g28379' => 'bca', 'BcaC02g11159' => 'bca', 'BcaC03g13258' => 'bca', 'BcaC03g13259' => 'bca', 'BcaC05g24456' => 'bca', 'BcaC05g24457' => 'bca', 'BcaC07g36922' => 'bca', 'BcaC07g36923' => 'bca', 'BcaC07g42050' => 'bca', 'BcaC07g42176' => 'bca', 'BcaC07g42195' => 'bca', 'BcaC07g42196' => 'bca', 'BcaNung06674' => 'bca', 'BolC2t06351H' => 'bol', 'BolC2t06352H' => 'bol', 'BolC3t12993H' => 'bol', 'BolC4t23525H' => 'bol', 'BolC4t27475H' => 'bol', 'BolC5t29025H' => 'bol', 'BolC5t29026H' => 'bol', 'BolC8t46898H' => 'bol', 'BolC8t46899H' => 'bol', 'BolC8t52630H' => 'bol', 'BolC8t52765H' => 'bol', 'BolC9t53824H' => 'bol', 'BraA03t09760Z' => 'bra', 'BraA03t10990Z' => 'bra', 'BraA05t20413Z' => 'bra', 'BraA08t35602Z' => 'bra', 'BraA09t36458Z' => 'bra', 'BraA09t42018Z' => 'bra', 'BraA09t42129Z' => 'bra', 'BraA10t42536Z' => 'bra', 'BraA10t42537Z' => 'bra', 'C01p10690' => 'bna', 'C02p03890' => 'bna', 'C02p03900' => 'bna', 'C03p04620' => 'bna', 'C04p19870' => 'bna', 'C04p59670' => 'bna', 'C05p02460' => 'bna', 'C05p02470' => 'bna', 'C08p00980' => 'bna', 'C08p00990' => 'bna', 'C08p51030' => 'bna', 'C08p52360' => 'bna', 'C09p09120' => 'bna', 'CAN.G19.15' => 'can', 'CAN.G251.10' => 'can', 'CAN.G251.9' => 'can', 'CAN.G398.24' => 'can', 'CAN.G410.32' => 'can', 'CAN.G881.2' => 'can', 'CANSAT01G3025' => 'cansat', 'CANSAT78G1211' => 'cansat', 'CANSAT78G1218' => 'cansat', 'CANSAT78G1521' => 'cansat', 'CANSAT78G1670' => 'cansat', 'CARHR003600' => 'chi', 'CARHR003610' => 'chi', 'CARHR006290' => 'chi', 'CARHR006430' => 'chi', 'CARHR124110' => 'chi', 'CARHR203870' => 'chi', 'CARHR203880' => 'chi', 'CARHR203890' => 'chi', 'CARHR276880' => 'chi', 'Carub.0001s0346' => 'cru', 'Carub.0001s0347' => 'cru', 'Carub.0001s0607' => 'cru', 'Carub.0003s2768' => 'cru', 'Carub.0003s2769' => 'cru', 'Carub.0004s1178' => 'cru', 'Carub.0006s0806' => 'cru', 'Carub.0006s0807' => 'cru', 'Carub.0006s0808' => 'cru', 'Carub.0008s0501' => 'cru', 'Carub.0008s2379' => 'cru', 'Ca_08655_v3' => 'car', 'Ca_08922_v3' => 'car', 'Ca_08923_v3' => 'car', 'Ca_09119_v3' => 'car', 'Ca_09703_v3' => 'car', 'Ca_09705_v3' => 'car', 'Ca_09835_v3' => 'car', 'Ca_26403_v3' => 'car', 'Ca_30719_v3' => 'car', 'CBR_g17958' => 'cbr', 'CBR_g40516' => 'cbr', 'Cc00_g05350' => 'ccan', 'Cc01_g18690' => 'ccan', 'Cc03_g04830' => 'ccan', 'Cc03_g04850' => 'ccan', 'CDE02G4469' => 'cde', 'CDE06G0883' => 'cde', 'CDE06G1295' => 'cde', 'CDE06G1390' => 'cde', 'CDE07G0584' => 'cde', 'CDE07G1084' => 'cde', 'CDE08G1259' => 'cde', 'Cfa002341' => 'cfa', 'Cfa024337' => 'cfa', 'Ciclev10004749m.g' => 'ccl', 'Ciclev10006127m.g' => 'ccl', 'Ciclev10019720m.g' => 'ccl', 'Ciclev10022652m.g' => 'ccl', 'CiPaw.01G190400' => 'cil', 'CiPaw.01G190500' => 'cil', 'CiPaw.02G116400' => 'cil', 'CiPaw.02G116500' => 'cil', 'CiPaw.04G183000' => 'cil', 'CiPaw.04G183300' => 'cil', 'ClCG05G004610' => 'cla', 'ClCG05G004620' => 'cla', 'ClCG06G006730' => 'cla', 'ClCG06G006740' => 'cla', 'ClCG11G003690' => 'cla', 'COL.COLO4_08276' => 'col', 'COL.COLO4_08277' => 'col', 'COL.COLO4_15787' => 'col', 'COL.COLO4_15789' => 'col', 'Cpa.g.c44815' => 'cpa', 'Cpa.g.sc52.144' => 'cpa', 'Cpa.g.sc58.46' => 'cpa', 'Cpa.g.sc58.47' => 'cpa', 'Cre08.g360900' => 'cre', 'CsaV3_2G013030' => 'csa', 'CsaV3_2G013050' => 'csa', 'CsaV3_2G015620' => 'csa', 'CsaV3_3G012590' => 'csa', 'CsaV3_3G012600' => 'csa', 'CSS0001641' => 'camsi', 'CSS0008310' => 'camsi', 'CSS0013011' => 'camsi', 'CSS0017147' => 'camsi', 'CSS0022970' => 'camsi', 'CSS0025655' => 'camsi', 'CSS0028665' => 'camsi', 'CSS0029117' => 'camsi', 'CSS0032024' => 'camsi', 'CSS0039681' => 'camsi', 'CSS0046516' => 'camsi', 'CSS0050307' => 'camsi', 'DCAR_005871' => 'dca', 'DCAR_007342' => 'dca', 'DCAR_024228' => 'dca', 'DCAR_027277' => 'dca', 'DCAR_030718' => 'dca', 'Dinv20287' => 'din', 'Dinv22461' => 'din', 'Dinv22464' => 'din', 'Dinv29912' => 'din', 'Dinv29913' => 'din', 'Dinv34580' => 'din', 'Dinv34582' => 'din', 'Dinv44632' => 'din', 'Duzib052G0266' => 'dzi', 'Duzib133G0907' => 'dzi', 'Duzib133G1034' => 'dzi', 'Duzib138G0207' => 'dzi', 'Duzib138G0491' => 'dzi', 'Duzib151G0812' => 'dzi', 'Duzib151G1166' => 'dzi', 'Duzib168G0192' => 'dzi', 'Duzib211G0077' => 'dzi', 'Duzib212G0429' => 'dzi', 'Duzib212G0472' => 'dzi', 'ECA233G2617' => 'eca', 'ECA236G4188' => 'eca', 'ECA240G0936' => 'eca', 'ECA240G1129' => 'eca', 'ECA247G0623' => 'eca', 'EL10Ac5g10451' => 'bvu', 'EL10Ac5g10453' => 'bvu', 'EL10Ac5g10894' => 'bvu', 'Eucgr.H00192' => 'egr', 'Eucgr.H00193' => 'egr', 'Eucgr.H00194' => 'egr', 'Eucgr.J01562' => 'egr', 'Eucgr.K03301' => 'egr', 'FAN02G0632' => 'fan', 'FAN05G5378' => 'fan', 'FAN09G3247' => 'fan', 'FAN12G0435' => 'fan', 'FAN12G2426' => 'fan', 'FAN14G1707' => 'fan', 'FAN14G4725' => 'fan', 'FAN15G2071' => 'fan', 'FAN17G3065' => 'fan', 'FAN19G1376' => 'fan', 'FAN20G0354' => 'fan', 'FAN20G2429' => 'fan', 'FAN20G2658' => 'fan', 'FAN24G2343' => 'fan', 'FAN27G2362' => 'fan', 'FAN28G1765' => 'fan', 'FvH4_1g16020' => 'fve', 'FvH4_2g04890' => 'fve', 'FvH4_2g22270' => 'fve', 'FvH4_4g02630' => 'fve', 'FvH4_4g02640' => 'fve', 'FvH4_6g02650' => 'fve', 'Glyma.02G140600' => 'gma', 'Glyma.03G159900' => 'gma', 'Glyma.05G234800' => 'gma', 'Glyma.07G269600' => 'gma', 'Glyma.08G042300' => 'gma', 'Glyma.10G033500' => 'gma', 'Glyma.10G185200' => 'gma', 'Glyma.17G004300' => 'gma', 'Glyma.19G161900' => 'gma', 'Glyma.20G205100' => 'gma', 'Glyma.20G205200' => 'gma', 'Gohir.A01G139101' => 'ghi', 'Gohir.A02G035600' => 'ghi', 'Gohir.A02G117901' => 'ghi', 'Gohir.A07G210100' => 'ghi', 'Gohir.A07G210200' => 'ghi', 'Gohir.A08G061100' => 'ghi', 'Gohir.A09G223000' => 'ghi', 'Gohir.A09G223100' => 'ghi', 'Gohir.A10G113900' => 'ghi', 'Gohir.A10G114000' => 'ghi', 'Gohir.D02G042300' => 'ghi', 'Gohir.D07G216100' => 'ghi', 'Gohir.D07G216200' => 'ghi', 'Gohir.D08G070400' => 'ghi', 'Gohir.D09G225000' => 'ghi', 'Gohir.D09G225100' => 'ghi', 'Gohir.D10G152300' => 'ghi', 'Gohir.D10G153200' => 'ghi', 'Gohir.D11G133701' => 'ghi', 'Gorai.004G074100' => 'gra', 'Gorai.005G046800' => 'gra', 'Gorai.006G246500' => 'gra', 'Gorai.006G246600' => 'gra', 'Gorai.007G142900' => 'gra', 'Gorai.011G171000' => 'gra', 'Gorai.011G171100' => 'gra', 'Gorai.013G104300' => 'gra', 'Gorai.013G104400' => 'gra', 'GSVIVG01000754001' => 'vvi', 'GSVIVG01000756001' => 'vvi', 'GSVIVG01010903001' => 'vvi', 'GSVIVG01017623001' => 'vvi', 'GSVIVG01018113001' => 'vvi', 'GSVIVG01018116001' => 'vvi', 'GSVIVG01018118001' => 'vvi', 'HanXRQChr03g0076211' => 'han', 'HanXRQChr03g0092431' => 'han', 'HanXRQChr03g0092441' => 'han', 'HanXRQChr03g0092591' => 'han', 'HanXRQChr03g0092671' => 'han', 'HanXRQChr03g0092681' => 'han', 'HanXRQChr03g0092691' => 'han', 'HanXRQChr03g0092701' => 'han', 'HanXRQChr03g0092721' => 'han', 'HanXRQChr03g0092731' => 'han', 'HanXRQChr04g0113681' => 'han', 'HanXRQChr10g0281371' => 'han', 'HanXRQChr11g0337141' => 'han', 'HanXRQChr13g0424521' => 'han', 'HanXRQChr13g0424531' => 'han', 'HanXRQChr13g0424541' => 'han', 'HanXRQChr16g0498221' => 'han', 'Haze_04377' => 'cav', 'Haze_11298' => 'cav', 'Haze_24547' => 'cav', 'Haze_24550' => 'cav', 'Haze_26587' => 'cav', 'Hma1.2p1_0650F.1_g195410' => 'hma', 'Hma1.2p1_0893F.1_g233470' => 'hma', 'HPP92_006508' => 'vpl', 'HPP92_024780' => 'vpl', 'Hund02688' => 'sun', 'Hund09380' => 'sun', 'Hund09381' => 'sun', 'Hund09832' => 'sun', 'Hund09833' => 'sun', 'Hund11351' => 'sun', 'Hund11513' => 'sun', 'Lalb_Chr06g0162591' => 'lal', 'Lalb_Chr06g0162601' => 'lal', 'Lalb_Chr06g0169321' => 'lal', 'Lalb_Chr09g0330951' => 'lal', 'Lalb_Chr16g0387631' => 'lal', 'Lalb_Chr21g0306241' => 'lal', 'Lalb_Chr25g0290051' => 'lal', 'Lalb_Chr25g0290061' => 'lal', 'Lalb_Chr25g0290071' => 'lal', 'Lj1g0003876' => 'lja', 'Lj1P1207T36' => 'lonja', 'Lj2C1156G12' => 'lonja', 'Lj3A793G39' => 'lonja', 'Lj3C580G2' => 'lonja', 'Lj3C780G2' => 'lonja', 'Lj3C780T4' => 'lonja', 'Lj3C793G9' => 'lonja', 'Lj4g0012960' => 'lja', 'Lj5g0021252' => 'lja', 'Lj5g0021484' => 'lja', 'Lj5g0024528' => 'lja', 'Lj6A399T12' => 'lonja', 'Lj6A656G65' => 'lonja', 'Lsat_1_v5_gn_3_125500' => 'lsa', 'Lsat_1_v5_gn_3_125540' => 'lsa', 'Lsat_1_v5_gn_5_72701' => 'lsa', 'Lsat_1_v5_gn_8_91560' => 'lsa', 'Lsat_1_v5_gn_9_9640' => 'lsa', 'Manes.01G200600' => 'mes', 'Manes.01G200700' => 'mes', 'Manes.03G168900' => 'mes', 'Manes.03G169000' => 'mes', 'Manes.05G085801' => 'mes', 'Manes.05G086200' => 'mes', 'Manes.15G036700' => 'mes', 'Manes.15G036900' => 'mes', 'Mapoly0004s0172' => 'mpo', 'Mapoly0023s0001' => 'mpo', 'Mapoly0142s0012' => 'mpo', 'MBI01_g32854_MAGBIO' => 'mbi', 'MBI11_g24427_MAGBIO' => 'mbi', 'MBI11_g47319_MAGBIO' => 'mbi', 'MCO01G433' => 'mco', 'MD00G1187800' => 'mdo', 'MD04G1226500' => 'mdo', 'MD05G1203900' => 'mdo', 'MD10G1191100' => 'mdo', 'MD12G1243500' => 'mdo', 'MD13G1207000' => 'mdo', 'MD13G1207100' => 'mdo', 'MD16G1208600' => 'mdo', 'Medtr1g050352' => 'mtr', 'Medtr1g070385' => 'mtr', 'Medtr1g070450' => 'mtr', 'Medtr1g075200' => 'mtr', 'Medtr1g075250' => 'mtr', 'Medtr1g075260' => 'mtr', 'Medtr1g475250' => 'mtr', 'Medtr4g075450' => 'mtr', 'Medtr7g096300' => 'mtr', 'Medtr8g105110' => 'mtr', 'MELO3C006470.2' => 'cme', 'MELO3C006471.2' => 'cme', 'MELO3C020772.2' => 'cme', 'MELO3C026780.2' => 'cme', 'MELO3C026781.2' => 'cme', 'Migut.D00390' => 'egut', 'Migut.G00435' => 'egut', 'Migut.G00436' => 'egut', 'Migut.G00718' => 'egut', 'MSTRG.21891' => 'ama', 'MSTRG.26910' => 'ama', 'MSTRG.4099' => 'ama', 'MSTRG.9925' => 'ama', 'Nitab4.5_0000165g0010' => 'nta', 'Nitab4.5_0000209g0180' => 'nta', 'Nitab4.5_0000244g0440' => 'nta', 'Nitab4.5_0000525g0220' => 'nta', 'Nitab4.5_0001597g0020' => 'nta', 'Nitab4.5_0001878g0040' => 'nta', 'Nitab4.5_0001878g0060' => 'nta', 'Nitab4.5_0002838g0100' => 'nta', 'Nitab4.5_0002838g0120' => 'nta', 'Nitab4.5_0004798g0030' => 'nta', 'Nitab4.5_0005420g0010' => 'nta', 'Nitab4.5_0005507g0010' => 'nta', 'Nitab4.5_0005574g0020' => 'nta', 'Nitab4.5_0005838g0010' => 'nta', 'Nitab4.5_0010580g0020' => 'nta', 'Nn1g02599' => 'nnu', 'Nn1g02608' => 'nnu', 'Nn3g17742' => 'nnu', 'Nn3g19534' => 'nnu', 'Nn3g19535' => 'nnu', 'Oeu008790.1' => 'oeu', 'Oeu008792.1' => 'oeu', 'Oeu032590.1' => 'oeu', 'Oeu035349.1' => 'oeu', 'Oeu049791.1' => 'oeu', 'Os01g0774500' => 'osa', 'Os03g0628800' => 'osa', 'Os03g0798600' => 'osa', 'Os05g0508800' => 'osa', 'Peaxi162Scf00036g02018' => 'pax', 'Peaxi162Scf00578g00032' => 'pax', 'Peaxi162Scf00578g00317' => 'pax', 'Peaxi162Scf00785g00114' => 'pax', 'Peaxi162Scf00813g00119' => 'pax', 'Peaxi162Scf00906g00227' => 'pax', 'PGR004G0875' => 'pgr', 'PGR004G2424' => 'pgr', 'PGR031G1239' => 'pgr', 'PGR031G2474' => 'pgr', 'PGR044G0423' => 'pgr', 'PGSC0003DMG400001128' => 'stu', 'PGSC0003DMG400007336' => 'stu', 'PGSC0003DMG400016318' => 'stu', 'PGSC0003DMG400016319' => 'stu', 'PGSC0003DMG400018074' => 'stu', 'Phvul.001G157700' => 'pvu', 'Phvul.002G148550' => 'pvu', 'Phvul.002G320200' => 'pvu', 'Phvul.003G089200' => 'pvu', 'Phvul.007G126000' => 'pvu', 'Phvul.007G126100' => 'pvu', 'Phvul.007G178000' => 'pvu', 'Phvul.007G178200' => 'pvu', 'Potri.002G043000' => 'ptr', 'Potri.002G043200' => 'ptr', 'Potri.003G123750' => 'ptr', 'Potri.005G055401' => 'ptr', 'Potri.005G219700' => 'ptr', 'Potri.005G220000' => 'ptr', 'Potri.008G161901' => 'ptr', 'Potri.008G162000' => 'ptr', 'Potri.008G162400' => 'ptr', 'Potri.010G076900' => 'ptr', 'Pp3c12_9180' => 'ppa', 'Pp3c13_19770' => 'ppa', 'Pp3c14_22950' => 'ppa', 'Pp3c16_12160' => 'ppa', 'Pp3c27_7820' => 'ppa', 'Pp3c2_3490' => 'ppa', 'Pp3c3_23700' => 'ppa', 'Pp3c3_36520' => 'ppa', 'Pp3c4_15250' => 'ppa', 'PRCOL_00007002' => 'pco', 'Prupe.1G030600' => 'ppe', 'Prupe.1G030700' => 'ppe', 'Prupe.6G345200' => 'ppe', 'Prupe.8G230300' => 'ppe', 'Prupe.8G230500' => 'ppe', 'Psat3g059600' => 'psa', 'Psat5g200920' => 'psa', 'Psat6g056440' => 'psa', 'Psat6g057360' => 'psa', 'Psat6g134120' => 'psa', 'Psat6g134160' => 'psa', 'Psat7g008640' => 'psa', 'Psat7g185240' => 'psa', 'PSO017G1330' => 'pso', 'PSO063G6097' => 'pso', 'PSO170G0835' => 'pso', 'PSO170G2499' => 'pso', 'PSO210G5058' => 'pso', 'PSO210G6154' => 'pso', 'PSO585G0031' => 'pso', 'PSO832G0264' => 'pso', 'PSO832G4288' => 'pso', 'QL03p027355' => 'qlo', 'QL03p027430' => 'qlo', 'QL04p081380' => 'qlo', 'QL06p015642' => 'qlo', 'QL06p015650' => 'qlo', 'QL06p015686' => 'qlo', 'QL12p042927' => 'qlo', 'QL93p1863_0035' => 'qlo', 'RcHm_v2.0_Chr3g0450581' => 'rch', 'RcHm_v2.0_Chr4g0390371' => 'rch', 'RcHm_v2.0_Chr4g0390381' => 'rch', 'RcHm_v2.0_Chr4g0390491' => 'rch', 'RcHm_v2.0_Chr4g0390501' => 'rch', 'RcHm_v2.0_Chr6g0289231' => 'rch', 'Rhsim04G0190400' => 'rsi', 'Rhsim04G0190500' => 'rsi', 'Rhsim04G0190600' => 'rsi', 'Rhsim13G0031400' => 'rsi', 'Rhsim13G0165600' => 'rsi', 'RhsimUnG0114600' => 'rsi', 'RhsimUnG0114700' => 'rsi', 'Sabra02G0034800' => 'sbr', 'Sabra02G0035100' => 'sbr', 'Sabra05G0168600' => 'sbr', 'Sabra05G0168800' => 'sbr', 'Sabra08G0123700' => 'sbr', 'Sabra10G0031900' => 'sbr', 'Sabra13G0039000' => 'sbr', 'SalBow2G0782' => 'sbo', 'SalBow2G1403' => 'sbo', 'SalBow4G0074' => 'sbo', 'SalBow4G2635' => 'sbo', 'SalBow5G3010' => 'sbo', 'Sc05g0000870' => 'sci', 'Sc05g0000890' => 'sci', 'Sc13g0005000' => 'sci', 'Sc13g0005030' => 'sci', 'Sc19g0003790' => 'sci', 'Sc19g0003800' => 'sci', 'Sed0003467' => 'sed', 'Sed0009355' => 'sed', 'Sed0009894' => 'sed', 'Sed0011972' => 'sed', 'Sed0021483' => 'sed', 'Sed0021750' => 'sed', 'Sed0026279' => 'sed', 'SEGI_05312' => 'sgi', 'SEGI_10112' => 'sgi', 'SEGI_15835' => 'sgi', 'SEGI_30386' => 'sgi', 'SEGI_34122' => 'sgi', 'SEGI_35063' => 'sgi', 'SGA_v2.0_scaffold101G29794' => 'sas', 'SGA_v2.0_scaffold1G00573' => 'sas', 'SGA_v2.0_scaffold79G25637' => 'sas', 'SGA_v2.0_scaffold88G27283' => 'sas', 'SGA_v2.0_scaffold88G27285' => 'sas', 'SGA_v2.0_scaffold88G27331' => 'sas', 'SHI09937' => 'shi', 'SMO119G0302' => 'smo', 'SMO137G0231' => 'smo', 'SMO367G1151' => 'smo', 'Solyc02g082000.3' => 'sly', 'Solyc06g031670.3' => 'sly', 'Solyc06g053810.3' => 'sly', 'Solyc07g025457.1' => 'sly', 'Solyc08g059740.1' => 'sly', 'Solyc08g059750.3' => 'sly', 'Solyc09g083370.3' => 'sly', 'Solyc12g038950.3' => 'sly', 'Sopen02g026630' => 'spe', 'Sopen06g018930' => 'spe', 'Sopen06g018940' => 'spe', 'Sopen08g009460' => 'spe', 'Sopen09g032290' => 'spe', 'Sp1g03080' => 'spa', 'Sp1g03090' => 'spa', 'Sp1g05480' => 'spa', 'Sp2g07860' => 'spa', 'Sp2g08430' => 'spa', 'Sp2g08440' => 'spa', 'Sp2g26200' => 'spa', 'Sp4g13170' => 'spa', 'Sp6g33840' => 'spa', 'SpUn1204_0010' => 'spa', 'TAR365G0908' => 'tar', 'TAR381G1270' => 'tar', 'TAR381G1651' => 'tar', 'TAR625G1131' => 'tar', 'TAR633G0962' => 'tar', 'TAR633G1729' => 'tar', 'TAR633G1864' => 'tar', 'TAR636G0221' => 'tar', 'TAR636G0314' => 'tar', 'TAR636G3202' => 'tar', 'THA.LOC104800805' => 'tha', 'THA.LOC104801096' => 'tha', 'THA.LOC104801555' => 'tha', 'THA.LOC104808491' => 'tha', 'THA.LOC104808595' => 'tha', 'THA.LOC104815985' => 'tha', 'THA.LOC104822250' => 'tha', 'THA.LOC104826071' => 'tha', 'Thecc.01G265200' => 'tca', 'Thecc.01G265300' => 'tca', 'Thecc.01G265700' => 'tca', 'Thecc.03G109100' => 'tca', 'Thecc.04G245900' => 'tca', 'Thecc.04G246000' => 'tca', 'Thhalv10003334m.g' => 'esa', 'Thhalv10005508m.g' => 'esa', 'Thhalv10005643m.g' => 'esa', 'Thhalv10007316m.g' => 'esa', 'Thhalv10009006m.g' => 'esa', 'Thhalv10009309m.g' => 'esa', 'Thhalv10014917m.g' => 'esa', 'Thhalv10014919m.g' => 'esa', 'Thhalv10015393m.g' => 'esa', 'Thhalv10016515m.g' => 'esa', 'Thhalv10029242m.g' => 'esa', 'TPR.G16654' => 'tpr', 'TPR.G20589' => 'tpr', 'TPR.G23029' => 'tpr', 'TPR.G27731' => 'tpr', 'TPR.G28889' => 'tpr', 'TPR.G28899' => 'tpr', 'TPR.G30846' => 'tpr', 'TPR.G5452' => 'tpr', 'TPR.G5713' => 'tpr', 'TPR.G9046' => 'tpr', 'TPR.G9061' => 'tpr', 'TWI09G1075' => 'twi', 'TWI12G0806' => 'twi', 'TWI18G0108' => 'twi', 'TWI53G1361' => 'twi', 'TWI73G0185' => 'twi', 'TWI73G0427' => 'twi', 'unitig_37.g12001' => 'ugi', 'unitig_747.g21660' => 'ugi', 'unitig_748.g7232' => 'ugi', 'unitig_748.g7315' => 'ugi', 'unitig_85.g27262' => 'ugi', 'unitig_92.g28220' => 'ugi', 'vmacro02632' => 'vma', 'vmacro08410' => 'vma', 'vmacro08411' => 'vma', 'vmacro15407' => 'vma', 'VMungo0251G3619' => 'vmu', 'VMungo0720G1204' => 'vmu', 'VMungo0720G1918' => 'vmu', 'VMungo0720G2387' => 'vmu', 'VMungo0720G2961' => 'vmu', 'VMungo1215G2154' => 'vmu', 'VMungo1383G2411' => 'vmu', 'Zm00001eb051130' => 'zma', 'Zm00001eb116830' => 'zma', 'Zm00001eb116850' => 'zma', 'Zm00001eb151740' => 'zma', 'Zm00001eb292360' => 'zma', 'Zm00001eb301640' => 'zma' ), 'gf_id' => 'HOM05D000856', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000856' ), 'data_identifier' => 'HOM05D000856', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000856', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p00010' => 'bna', 'A03p04160' => 'bna', 'A03p17160' => 'bna', 'A04p23370' => 'bna', 'A05p14860' => 'bna', 'A08p37020' => 'bna', 'A09p08050' => 'bna', 'A09p66800' => 'bna', 'A09p67940' => 'bna', 'A10p02680' => 'bna', 'A10p05320' => 'bna', 'Aa31LG1G20560' => 'aar', 'Aa31LG1G20610' => 'aar', 'Aa31LG1G7810' => 'aar', 'Aa31LG5G3590' => 'aar', 'Aa31LG5G6140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3819' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4683' => 'aag', 'Actinidia04480' => 'ach', 'Actinidia05466' => 'ach', 'Actinidia08445' => 'ach', 'Actinidia21170' => 'ach', 'Actinidia24812' => 'ach', 'Actinidia24951' => 'ach', 'Actinidia40088' => 'ach', 'Ah.02g111660' => 'amhyb', 'Ah.11g048900' => 'amhyb', 'Ah.11g049910' => 'amhyb', 'AL1G13870' => 'aly', 'AL1G13880' => 'aly', 'AL1G16760' => 'aly', 'AL390U10020' => 'aly', 'AL4G25520' => 'aly', 'AL6G19890' => 'aly', 'AL6G19900' => 'aly', 'AL6G19910' => 'aly', 'AL8G40100' => 'aly', 'Aqoxy2G03562' => 'aox', 'Aqoxy5G00316' => 'aox', 'Aqoxy5G00926' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1628KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1H403S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2FU6SJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.882I6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8YRY2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YN1SN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AF70II' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZA8L1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F916KL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHRD8H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KTZ8QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S22EMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8M29T' => 'arhy', 'AT1G04270' => 'ath', 'AT1G04280' => 'ath', 'AT1G06750' => 'ath', 'AT1G33850' => 'ath', 'AT2G30630' => 'ath', 'AT5G09490' => 'ath', 'AT5G09500' => 'ath', 'AT5G09510' => 'ath', 'AT5G43640' => 'ath', 'AT5G63070' => 'ath', 'ATR0605G315' => 'atr', 'Atru.chr11.175' => 'acertr', 'Atru.chr11.653' => 'acertr', 'Atru.chr3.1616' => 'acertr', 'Atru.chr4.2230' => 'acertr', 'Atru.chr4.2232' => 'acertr', 'Atru.chr5.1598' => 'acertr', 'Atru.chr5.1600' => 'acertr', 'Atru.chr5.2188' => 'acertr', 'AUR62008326' => 'cqu', 'AUR62011922' => 'cqu', 'AUR62011924' => 'cqu', 'AUR62021771' => 'cqu', 'AUR62032237' => 'cqu', 'AUR62032240' => 'cqu', 'BcaB01g05572' => 'bca', 'BcaB02g10337' => 'bca', 'BcaB04g19944' => 'bca', 'BcaB05g21548' => 'bca', 'BcaB05g21549' => 'bca', 'BcaB05g23227' => 'bca', 'BcaB06g26256' => 'bca', 'BcaB06g26257' => 'bca', 'BcaB06g28379' => 'bca', 'BcaC02g11159' => 'bca', 'BcaC03g13258' => 'bca', 'BcaC03g13259' => 'bca', 'BcaC05g24456' => 'bca', 'BcaC05g24457' => 'bca', 'BcaC07g36922' => 'bca', 'BcaC07g36923' => 'bca', 'BcaC07g42050' => 'bca', 'BcaC07g42176' => 'bca', 'BcaC07g42195' => 'bca', 'BcaC07g42196' => 'bca', 'BcaNung06674' => 'bca', 'BolC2t06351H' => 'bol', 'BolC2t06352H' => 'bol', 'BolC3t12993H' => 'bol', 'BolC4t23525H' => 'bol', 'BolC4t27475H' => 'bol', 'BolC5t29025H' => 'bol', 'BolC5t29026H' => 'bol', 'BolC8t46898H' => 'bol', 'BolC8t46899H' => 'bol', 'BolC8t52630H' => 'bol', 'BolC8t52765H' => 'bol', 'BolC9t53824H' => 'bol', 'BraA03t09760Z' => 'bra', 'BraA03t10990Z' => 'bra', 'BraA05t20413Z' => 'bra', 'BraA08t35602Z' => 'bra', 'BraA09t36458Z' => 'bra', 'BraA09t42018Z' => 'bra', 'BraA09t42129Z' => 'bra', 'BraA10t42536Z' => 'bra', 'BraA10t42537Z' => 'bra', 'C01p10690' => 'bna', 'C02p03890' => 'bna', 'C02p03900' => 'bna', 'C03p04620' => 'bna', 'C04p19870' => 'bna', 'C04p59670' => 'bna', 'C05p02460' => 'bna', 'C05p02470' => 'bna', 'C08p00980' => 'bna', 'C08p00990' => 'bna', 'C08p51030' => 'bna', 'C08p52360' => 'bna', 'C09p09120' => 'bna', 'CAN.G19.15' => 'can', 'CAN.G251.10' => 'can', 'CAN.G251.9' => 'can', 'CAN.G398.24' => 'can', 'CAN.G410.32' => 'can', 'CAN.G881.2' => 'can', 'CANSAT01G3025' => 'cansat', 'CANSAT78G1211' => 'cansat', 'CANSAT78G1218' => 'cansat', 'CANSAT78G1521' => 'cansat', 'CANSAT78G1670' => 'cansat', 'CARHR003600' => 'chi', 'CARHR003610' => 'chi', 'CARHR006290' => 'chi', 'CARHR006430' => 'chi', 'CARHR124110' => 'chi', 'CARHR203870' => 'chi', 'CARHR203880' => 'chi', 'CARHR203890' => 'chi', 'CARHR276880' => 'chi', 'Carub.0001s0346' => 'cru', 'Carub.0001s0347' => 'cru', 'Carub.0001s0607' => 'cru', 'Carub.0003s2768' => 'cru', 'Carub.0003s2769' => 'cru', 'Carub.0004s1178' => 'cru', 'Carub.0006s0806' => 'cru', 'Carub.0006s0807' => 'cru', 'Carub.0006s0808' => 'cru', 'Carub.0008s0501' => 'cru', 'Carub.0008s2379' => 'cru', 'Ca_08655_v3' => 'car', 'Ca_08922_v3' => 'car', 'Ca_08923_v3' => 'car', 'Ca_09119_v3' => 'car', 'Ca_09703_v3' => 'car', 'Ca_09705_v3' => 'car', 'Ca_09835_v3' => 'car', 'Ca_26403_v3' => 'car', 'Ca_30719_v3' => 'car', 'CBR_g17958' => 'cbr', 'CBR_g40516' => 'cbr', 'Cc00_g05350' => 'ccan', 'Cc01_g18690' => 'ccan', 'Cc03_g04830' => 'ccan', 'Cc03_g04850' => 'ccan', 'CDE02G4469' => 'cde', 'CDE06G0883' => 'cde', 'CDE06G1295' => 'cde', 'CDE06G1390' => 'cde', 'CDE07G0584' => 'cde', 'CDE07G1084' => 'cde', 'CDE08G1259' => 'cde', 'Cfa002341' => 'cfa', 'Cfa024337' => 'cfa', 'Ciclev10004749m.g' => 'ccl', 'Ciclev10006127m.g' => 'ccl', 'Ciclev10019720m.g' => 'ccl', 'Ciclev10022652m.g' => 'ccl', 'CiPaw.01G190400' => 'cil', 'CiPaw.01G190500' => 'cil', 'CiPaw.02G116400' => 'cil', 'CiPaw.02G116500' => 'cil', 'CiPaw.04G183000' => 'cil', 'CiPaw.04G183300' => 'cil', 'ClCG05G004610' => 'cla', 'ClCG05G004620' => 'cla', 'ClCG06G006730' => 'cla', 'ClCG06G006740' => 'cla', 'ClCG11G003690' => 'cla', 'COL.COLO4_08276' => 'col', 'COL.COLO4_08277' => 'col', 'COL.COLO4_15787' => 'col', 'COL.COLO4_15789' => 'col', 'Cpa.g.c44815' => 'cpa', 'Cpa.g.sc52.144' => 'cpa', 'Cpa.g.sc58.46' => 'cpa', 'Cpa.g.sc58.47' => 'cpa', 'Cre08.g360900' => 'cre', 'CsaV3_2G013030' => 'csa', 'CsaV3_2G013050' => 'csa', 'CsaV3_2G015620' => 'csa', 'CsaV3_3G012590' => 'csa', 'CsaV3_3G012600' => 'csa', 'CSS0001641' => 'camsi', 'CSS0008310' => 'camsi', 'CSS0013011' => 'camsi', 'CSS0017147' => 'camsi', 'CSS0022970' => 'camsi', 'CSS0025655' => 'camsi', 'CSS0028665' => 'camsi', 'CSS0029117' => 'camsi', 'CSS0032024' => 'camsi', 'CSS0039681' => 'camsi', 'CSS0046516' => 'camsi', 'CSS0050307' => 'camsi', 'DCAR_005871' => 'dca', 'DCAR_007342' => 'dca', 'DCAR_024228' => 'dca', 'DCAR_027277' => 'dca', 'DCAR_030718' => 'dca', 'Dinv20287' => 'din', 'Dinv22461' => 'din', 'Dinv22464' => 'din', 'Dinv29912' => 'din', 'Dinv29913' => 'din', 'Dinv34580' => 'din', 'Dinv34582' => 'din', 'Dinv44632' => 'din', 'Duzib052G0266' => 'dzi', 'Duzib133G0907' => 'dzi', 'Duzib133G1034' => 'dzi', 'Duzib138G0207' => 'dzi', 'Duzib138G0491' => 'dzi', 'Duzib151G0812' => 'dzi', 'Duzib151G1166' => 'dzi', 'Duzib168G0192' => 'dzi', 'Duzib211G0077' => 'dzi', 'Duzib212G0429' => 'dzi', 'Duzib212G0472' => 'dzi', 'ECA233G2617' => 'eca', 'ECA236G4188' => 'eca', 'ECA240G0936' => 'eca', 'ECA240G1129' => 'eca', 'ECA247G0623' => 'eca', 'EL10Ac5g10451' => 'bvu', 'EL10Ac5g10453' => 'bvu', 'EL10Ac5g10894' => 'bvu', 'Eucgr.H00192' => 'egr', 'Eucgr.H00193' => 'egr', 'Eucgr.H00194' => 'egr', 'Eucgr.J01562' => 'egr', 'Eucgr.K03301' => 'egr', 'FAN02G0632' => 'fan', 'FAN05G5378' => 'fan', 'FAN09G3247' => 'fan', 'FAN12G0435' => 'fan', 'FAN12G2426' => 'fan', 'FAN14G1707' => 'fan', 'FAN14G4725' => 'fan', 'FAN15G2071' => 'fan', 'FAN17G3065' => 'fan', 'FAN19G1376' => 'fan', 'FAN20G0354' => 'fan', 'FAN20G2429' => 'fan', 'FAN20G2658' => 'fan', 'FAN24G2343' => 'fan', 'FAN27G2362' => 'fan', 'FAN28G1765' => 'fan', 'FvH4_1g16020' => 'fve', 'FvH4_2g04890' => 'fve', 'FvH4_2g22270' => 'fve', 'FvH4_4g02630' => 'fve', 'FvH4_4g02640' => 'fve', 'FvH4_6g02650' => 'fve', 'Glyma.02G140600' => 'gma', 'Glyma.03G159900' => 'gma', 'Glyma.05G234800' => 'gma', 'Glyma.07G269600' => 'gma', 'Glyma.08G042300' => 'gma', 'Glyma.10G033500' => 'gma', 'Glyma.10G185200' => 'gma', 'Glyma.17G004300' => 'gma', 'Glyma.19G161900' => 'gma', 'Glyma.20G205100' => 'gma', 'Glyma.20G205200' => 'gma', 'Gohir.A01G139101' => 'ghi', 'Gohir.A02G035600' => 'ghi', 'Gohir.A02G117901' => 'ghi', 'Gohir.A07G210100' => 'ghi', 'Gohir.A07G210200' => 'ghi', 'Gohir.A08G061100' => 'ghi', 'Gohir.A09G223000' => 'ghi', 'Gohir.A09G223100' => 'ghi', 'Gohir.A10G113900' => 'ghi', 'Gohir.A10G114000' => 'ghi', 'Gohir.D02G042300' => 'ghi', 'Gohir.D07G216100' => 'ghi', 'Gohir.D07G216200' => 'ghi', 'Gohir.D08G070400' => 'ghi', 'Gohir.D09G225000' => 'ghi', 'Gohir.D09G225100' => 'ghi', 'Gohir.D10G152300' => 'ghi', 'Gohir.D10G153200' => 'ghi', 'Gohir.D11G133701' => 'ghi', 'Gorai.004G074100' => 'gra', 'Gorai.005G046800' => 'gra', 'Gorai.006G246500' => 'gra', 'Gorai.006G246600' => 'gra', 'Gorai.007G142900' => 'gra', 'Gorai.011G171000' => 'gra', 'Gorai.011G171100' => 'gra', 'Gorai.013G104300' => 'gra', 'Gorai.013G104400' => 'gra', 'GSVIVG01000754001' => 'vvi', 'GSVIVG01000756001' => 'vvi', 'GSVIVG01010903001' => 'vvi', 'GSVIVG01017623001' => 'vvi', 'GSVIVG01018113001' => 'vvi', 'GSVIVG01018116001' => 'vvi', 'GSVIVG01018118001' => 'vvi', 'HanXRQChr03g0076211' => 'han', 'HanXRQChr03g0092431' => 'han', 'HanXRQChr03g0092441' => 'han', 'HanXRQChr03g0092591' => 'han', 'HanXRQChr03g0092671' => 'han', 'HanXRQChr03g0092681' => 'han', 'HanXRQChr03g0092691' => 'han', 'HanXRQChr03g0092701' => 'han', 'HanXRQChr03g0092721' => 'han', 'HanXRQChr03g0092731' => 'han', 'HanXRQChr04g0113681' => 'han', 'HanXRQChr10g0281371' => 'han', 'HanXRQChr11g0337141' => 'han', 'HanXRQChr13g0424521' => 'han', 'HanXRQChr13g0424531' => 'han', 'HanXRQChr13g0424541' => 'han', 'HanXRQChr16g0498221' => 'han', 'Haze_04377' => 'cav', 'Haze_11298' => 'cav', 'Haze_24547' => 'cav', 'Haze_24550' => 'cav', 'Haze_26587' => 'cav', 'Hma1.2p1_0650F.1_g195410' => 'hma', 'Hma1.2p1_0893F.1_g233470' => 'hma', 'HPP92_006508' => 'vpl', 'HPP92_024780' => 'vpl', 'Hund02688' => 'sun', 'Hund09380' => 'sun', 'Hund09381' => 'sun', 'Hund09832' => 'sun', 'Hund09833' => 'sun', 'Hund11351' => 'sun', 'Hund11513' => 'sun', 'Lalb_Chr06g0162591' => 'lal', 'Lalb_Chr06g0162601' => 'lal', 'Lalb_Chr06g0169321' => 'lal', 'Lalb_Chr09g0330951' => 'lal', 'Lalb_Chr16g0387631' => 'lal', 'Lalb_Chr21g0306241' => 'lal', 'Lalb_Chr25g0290051' => 'lal', 'Lalb_Chr25g0290061' => 'lal', 'Lalb_Chr25g0290071' => 'lal', 'Lj1g0003876' => 'lja', 'Lj1P1207T36' => 'lonja', 'Lj2C1156G12' => 'lonja', 'Lj3A793G39' => 'lonja', 'Lj3C580G2' => 'lonja', 'Lj3C780G2' => 'lonja', 'Lj3C780T4' => 'lonja', 'Lj3C793G9' => 'lonja', 'Lj4g0012960' => 'lja', 'Lj5g0021252' => 'lja', 'Lj5g0021484' => 'lja', 'Lj5g0024528' => 'lja', 'Lj6A399T12' => 'lonja', 'Lj6A656G65' => 'lonja', 'Lsat_1_v5_gn_3_125500' => 'lsa', 'Lsat_1_v5_gn_3_125540' => 'lsa', 'Lsat_1_v5_gn_5_72701' => 'lsa', 'Lsat_1_v5_gn_8_91560' => 'lsa', 'Lsat_1_v5_gn_9_9640' => 'lsa', 'Manes.01G200600' => 'mes', 'Manes.01G200700' => 'mes', 'Manes.03G168900' => 'mes', 'Manes.03G169000' => 'mes', 'Manes.05G085801' => 'mes', 'Manes.05G086200' => 'mes', 'Manes.15G036700' => 'mes', 'Manes.15G036900' => 'mes', 'Mapoly0004s0172' => 'mpo', 'Mapoly0023s0001' => 'mpo', 'Mapoly0142s0012' => 'mpo', 'MBI01_g32854_MAGBIO' => 'mbi', 'MBI11_g24427_MAGBIO' => 'mbi', 'MBI11_g47319_MAGBIO' => 'mbi', 'MCO01G433' => 'mco', 'MD00G1187800' => 'mdo', 'MD04G1226500' => 'mdo', 'MD05G1203900' => 'mdo', 'MD10G1191100' => 'mdo', 'MD12G1243500' => 'mdo', 'MD13G1207000' => 'mdo', 'MD13G1207100' => 'mdo', 'MD16G1208600' => 'mdo', 'Medtr1g050352' => 'mtr', 'Medtr1g070385' => 'mtr', 'Medtr1g070450' => 'mtr', 'Medtr1g075200' => 'mtr', 'Medtr1g075250' => 'mtr', 'Medtr1g075260' => 'mtr', 'Medtr1g475250' => 'mtr', 'Medtr4g075450' => 'mtr', 'Medtr7g096300' => 'mtr', 'Medtr8g105110' => 'mtr', 'MELO3C006470.2' => 'cme', 'MELO3C006471.2' => 'cme', 'MELO3C020772.2' => 'cme', 'MELO3C026780.2' => 'cme', 'MELO3C026781.2' => 'cme', 'Migut.D00390' => 'egut', 'Migut.G00435' => 'egut', 'Migut.G00436' => 'egut', 'Migut.G00718' => 'egut', 'MSTRG.21891' => 'ama', 'MSTRG.26910' => 'ama', 'MSTRG.4099' => 'ama', 'MSTRG.9925' => 'ama', 'Nitab4.5_0000165g0010' => 'nta', 'Nitab4.5_0000209g0180' => 'nta', 'Nitab4.5_0000244g0440' => 'nta', 'Nitab4.5_0000525g0220' => 'nta', 'Nitab4.5_0001597g0020' => 'nta', 'Nitab4.5_0001878g0040' => 'nta', 'Nitab4.5_0001878g0060' => 'nta', 'Nitab4.5_0002838g0100' => 'nta', 'Nitab4.5_0002838g0120' => 'nta', 'Nitab4.5_0004798g0030' => 'nta', 'Nitab4.5_0005420g0010' => 'nta', 'Nitab4.5_0005507g0010' => 'nta', 'Nitab4.5_0005574g0020' => 'nta', 'Nitab4.5_0005838g0010' => 'nta', 'Nitab4.5_0010580g0020' => 'nta', 'Nn1g02599' => 'nnu', 'Nn1g02608' => 'nnu', 'Nn3g17742' => 'nnu', 'Nn3g19534' => 'nnu', 'Nn3g19535' => 'nnu', 'Oeu008790.1' => 'oeu', 'Oeu008792.1' => 'oeu', 'Oeu032590.1' => 'oeu', 'Oeu035349.1' => 'oeu', 'Oeu049791.1' => 'oeu', 'Os01g0774500' => 'osa', 'Os03g0628800' => 'osa', 'Os03g0798600' => 'osa', 'Os05g0508800' => 'osa', 'Peaxi162Scf00036g02018' => 'pax', 'Peaxi162Scf00578g00032' => 'pax', 'Peaxi162Scf00578g00317' => 'pax', 'Peaxi162Scf00785g00114' => 'pax', 'Peaxi162Scf00813g00119' => 'pax', 'Peaxi162Scf00906g00227' => 'pax', 'PGR004G0875' => 'pgr', 'PGR004G2424' => 'pgr', 'PGR031G1239' => 'pgr', 'PGR031G2474' => 'pgr', 'PGR044G0423' => 'pgr', 'PGSC0003DMG400001128' => 'stu', 'PGSC0003DMG400007336' => 'stu', 'PGSC0003DMG400016318' => 'stu', 'PGSC0003DMG400016319' => 'stu', 'PGSC0003DMG400018074' => 'stu', 'Phvul.001G157700' => 'pvu', 'Phvul.002G148550' => 'pvu', 'Phvul.002G320200' => 'pvu', 'Phvul.003G089200' => 'pvu', 'Phvul.007G126000' => 'pvu', 'Phvul.007G126100' => 'pvu', 'Phvul.007G178000' => 'pvu', 'Phvul.007G178200' => 'pvu', 'Potri.002G043000' => 'ptr', 'Potri.002G043200' => 'ptr', 'Potri.003G123750' => 'ptr', 'Potri.005G055401' => 'ptr', 'Potri.005G219700' => 'ptr', 'Potri.005G220000' => 'ptr', 'Potri.008G161901' => 'ptr', 'Potri.008G162000' => 'ptr', 'Potri.008G162400' => 'ptr', 'Potri.010G076900' => 'ptr', 'Pp3c12_9180' => 'ppa', 'Pp3c13_19770' => 'ppa', 'Pp3c14_22950' => 'ppa', 'Pp3c16_12160' => 'ppa', 'Pp3c27_7820' => 'ppa', 'Pp3c2_3490' => 'ppa', 'Pp3c3_23700' => 'ppa', 'Pp3c3_36520' => 'ppa', 'Pp3c4_15250' => 'ppa', 'PRCOL_00007002' => 'pco', 'Prupe.1G030600' => 'ppe', 'Prupe.1G030700' => 'ppe', 'Prupe.6G345200' => 'ppe', 'Prupe.8G230300' => 'ppe', 'Prupe.8G230500' => 'ppe', 'Psat3g059600' => 'psa', 'Psat5g200920' => 'psa', 'Psat6g056440' => 'psa', 'Psat6g057360' => 'psa', 'Psat6g134120' => 'psa', 'Psat6g134160' => 'psa', 'Psat7g008640' => 'psa', 'Psat7g185240' => 'psa', 'PSO017G1330' => 'pso', 'PSO063G6097' => 'pso', 'PSO170G0835' => 'pso', 'PSO170G2499' => 'pso', 'PSO210G5058' => 'pso', 'PSO210G6154' => 'pso', 'PSO585G0031' => 'pso', 'PSO832G0264' => 'pso', 'PSO832G4288' => 'pso', 'QL03p027355' => 'qlo', 'QL03p027430' => 'qlo', 'QL04p081380' => 'qlo', 'QL06p015642' => 'qlo', 'QL06p015650' => 'qlo', 'QL06p015686' => 'qlo', 'QL12p042927' => 'qlo', 'QL93p1863_0035' => 'qlo', 'RcHm_v2.0_Chr3g0450581' => 'rch', 'RcHm_v2.0_Chr4g0390371' => 'rch', 'RcHm_v2.0_Chr4g0390381' => 'rch', 'RcHm_v2.0_Chr4g0390491' => 'rch', 'RcHm_v2.0_Chr4g0390501' => 'rch', 'RcHm_v2.0_Chr6g0289231' => 'rch', 'Rhsim04G0190400' => 'rsi', 'Rhsim04G0190500' => 'rsi', 'Rhsim04G0190600' => 'rsi', 'Rhsim13G0031400' => 'rsi', 'Rhsim13G0165600' => 'rsi', 'RhsimUnG0114600' => 'rsi', 'RhsimUnG0114700' => 'rsi', 'Sabra02G0034800' => 'sbr', 'Sabra02G0035100' => 'sbr', 'Sabra05G0168600' => 'sbr', 'Sabra05G0168800' => 'sbr', 'Sabra08G0123700' => 'sbr', 'Sabra10G0031900' => 'sbr', 'Sabra13G0039000' => 'sbr', 'SalBow2G0782' => 'sbo', 'SalBow2G1403' => 'sbo', 'SalBow4G0074' => 'sbo', 'SalBow4G2635' => 'sbo', 'SalBow5G3010' => 'sbo', 'Sc05g0000870' => 'sci', 'Sc05g0000890' => 'sci', 'Sc13g0005000' => 'sci', 'Sc13g0005030' => 'sci', 'Sc19g0003790' => 'sci', 'Sc19g0003800' => 'sci', 'Sed0003467' => 'sed', 'Sed0009355' => 'sed', 'Sed0009894' => 'sed', 'Sed0011972' => 'sed', 'Sed0021483' => 'sed', 'Sed0021750' => 'sed', 'Sed0026279' => 'sed', 'SEGI_05312' => 'sgi', 'SEGI_10112' => 'sgi', 'SEGI_15835' => 'sgi', 'SEGI_30386' => 'sgi', 'SEGI_34122' => 'sgi', 'SEGI_35063' => 'sgi', 'SGA_v2.0_scaffold101G29794' => 'sas', 'SGA_v2.0_scaffold1G00573' => 'sas', 'SGA_v2.0_scaffold79G25637' => 'sas', 'SGA_v2.0_scaffold88G27283' => 'sas', 'SGA_v2.0_scaffold88G27285' => 'sas', 'SGA_v2.0_scaffold88G27331' => 'sas', 'SHI09937' => 'shi', 'SMO119G0302' => 'smo', 'SMO137G0231' => 'smo', 'SMO367G1151' => 'smo', 'Solyc02g082000.3' => 'sly', 'Solyc06g031670.3' => 'sly', 'Solyc06g053810.3' => 'sly', 'Solyc07g025457.1' => 'sly', 'Solyc08g059740.1' => 'sly', 'Solyc08g059750.3' => 'sly', 'Solyc09g083370.3' => 'sly', 'Solyc12g038950.3' => 'sly', 'Sopen02g026630' => 'spe', 'Sopen06g018930' => 'spe', 'Sopen06g018940' => 'spe', 'Sopen08g009460' => 'spe', 'Sopen09g032290' => 'spe', 'Sp1g03080' => 'spa', 'Sp1g03090' => 'spa', 'Sp1g05480' => 'spa', 'Sp2g07860' => 'spa', 'Sp2g08430' => 'spa', 'Sp2g08440' => 'spa', 'Sp2g26200' => 'spa', 'Sp4g13170' => 'spa', 'Sp6g33840' => 'spa', 'SpUn1204_0010' => 'spa', 'TAR365G0908' => 'tar', 'TAR381G1270' => 'tar', 'TAR381G1651' => 'tar', 'TAR625G1131' => 'tar', 'TAR633G0962' => 'tar', 'TAR633G1729' => 'tar', 'TAR633G1864' => 'tar', 'TAR636G0221' => 'tar', 'TAR636G0314' => 'tar', 'TAR636G3202' => 'tar', 'THA.LOC104800805' => 'tha', 'THA.LOC104801096' => 'tha', 'THA.LOC104801555' => 'tha', 'THA.LOC104808491' => 'tha', 'THA.LOC104808595' => 'tha', 'THA.LOC104815985' => 'tha', 'THA.LOC104822250' => 'tha', 'THA.LOC104826071' => 'tha', 'Thecc.01G265200' => 'tca', 'Thecc.01G265300' => 'tca', 'Thecc.01G265700' => 'tca', 'Thecc.03G109100' => 'tca', 'Thecc.04G245900' => 'tca', 'Thecc.04G246000' => 'tca', 'Thhalv10003334m.g' => 'esa', 'Thhalv10005508m.g' => 'esa', 'Thhalv10005643m.g' => 'esa', 'Thhalv10007316m.g' => 'esa', 'Thhalv10009006m.g' => 'esa', 'Thhalv10009309m.g' => 'esa', 'Thhalv10014917m.g' => 'esa', 'Thhalv10014919m.g' => 'esa', 'Thhalv10015393m.g' => 'esa', 'Thhalv10016515m.g' => 'esa', 'Thhalv10029242m.g' => 'esa', 'TPR.G16654' => 'tpr', 'TPR.G20589' => 'tpr', 'TPR.G23029' => 'tpr', 'TPR.G27731' => 'tpr', 'TPR.G28889' => 'tpr', 'TPR.G28899' => 'tpr', 'TPR.G30846' => 'tpr', 'TPR.G5452' => 'tpr', 'TPR.G5713' => 'tpr', 'TPR.G9046' => 'tpr', 'TPR.G9061' => 'tpr', 'TWI09G1075' => 'twi', 'TWI12G0806' => 'twi', 'TWI18G0108' => 'twi', 'TWI53G1361' => 'twi', 'TWI73G0185' => 'twi', 'TWI73G0427' => 'twi', 'unitig_37.g12001' => 'ugi', 'unitig_747.g21660' => 'ugi', 'unitig_748.g7232' => 'ugi', 'unitig_748.g7315' => 'ugi', 'unitig_85.g27262' => 'ugi', 'unitig_92.g28220' => 'ugi', 'vmacro02632' => 'vma', 'vmacro08410' => 'vma', 'vmacro08411' => 'vma', 'vmacro15407' => 'vma', 'VMungo0251G3619' => 'vmu', 'VMungo0720G1204' => 'vmu', 'VMungo0720G1918' => 'vmu', 'VMungo0720G2387' => 'vmu', 'VMungo0720G2961' => 'vmu', 'VMungo1215G2154' => 'vmu', 'VMungo1383G2411' => 'vmu', 'Zm00001eb051130' => 'zma', 'Zm00001eb116830' => 'zma', 'Zm00001eb116850' => 'zma', 'Zm00001eb151740' => 'zma', 'Zm00001eb292360' => 'zma', 'Zm00001eb301640' => 'zma' ) $gf_id = 'HOM05D000856' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000856' ) $data_identifier = 'HOM05D000856' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 13, 'ath' => (int) 10, 'atr' => (int) 1, 'acertr' => (int) 8, 'cqu' => (int) 6, 'bca' => (int) 21, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 11, 'car' => (int) 9, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 8, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 5, 'fan' => (int) 16, 'fve' => (int) 6, 'gma' => (int) 11, 'ghi' => (int) 19, 'gra' => (int) 9, 'vvi' => (int) 7, 'han' => (int) 17, 'cav' => (int) 5, 'hma' => (int) 2, 'vpl' => (int) 2, 'sun' => (int) 7, 'lal' => (int) 9, 'lja' => (int) 5, 'lonja' => (int) 9, 'lsa' => (int) 5, 'mes' => (int) 8, 'mpo' => (int) 3, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 10, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 15, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 9, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 9, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 6, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 5, 'spa' => (int) 10, 'tar' => (int) 10, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 11, 'tpr' => (int) 11, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 4, 'vmu' => (int) 7, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb301640' $species_info = array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ) $local_species = 'sgi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000856', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p00010' => 'bna', 'A03p04160' => 'bna', 'A03p17160' => 'bna', 'A04p23370' => 'bna', 'A05p14860' => 'bna', 'A08p37020' => 'bna', 'A09p08050' => 'bna', 'A09p66800' => 'bna', 'A09p67940' => 'bna', 'A10p02680' => 'bna', 'A10p05320' => 'bna', 'Aa31LG1G20560' => 'aar', 'Aa31LG1G20610' => 'aar', 'Aa31LG1G7810' => 'aar', 'Aa31LG5G3590' => 'aar', 'Aa31LG5G6140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3819' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4683' => 'aag', 'Actinidia04480' => 'ach', 'Actinidia05466' => 'ach', 'Actinidia08445' => 'ach', 'Actinidia21170' => 'ach', 'Actinidia24812' => 'ach', 'Actinidia24951' => 'ach', 'Actinidia40088' => 'ach', 'Ah.02g111660' => 'amhyb', 'Ah.11g048900' => 'amhyb', 'Ah.11g049910' => 'amhyb', 'AL1G13870' => 'aly', 'AL1G13880' => 'aly', 'AL1G16760' => 'aly', 'AL390U10020' => 'aly', 'AL4G25520' => 'aly', 'AL6G19890' => 'aly', 'AL6G19900' => 'aly', 'AL6G19910' => 'aly', 'AL8G40100' => 'aly', 'Aqoxy2G03562' => 'aox', 'Aqoxy5G00316' => 'aox', 'Aqoxy5G00926' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1628KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1H403S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2FU6SJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.882I6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8YRY2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YN1SN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AF70II' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZA8L1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F916KL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHRD8H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KTZ8QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S22EMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8M29T' => 'arhy', 'AT1G04270' => 'ath', 'AT1G04280' => 'ath', 'AT1G06750' => 'ath', 'AT1G33850' => 'ath', 'AT2G30630' => 'ath', 'AT5G09490' => 'ath', 'AT5G09500' => 'ath', 'AT5G09510' => 'ath', 'AT5G43640' => 'ath', 'AT5G63070' => 'ath', 'ATR0605G315' => 'atr', 'Atru.chr11.175' => 'acertr', 'Atru.chr11.653' => 'acertr', 'Atru.chr3.1616' => 'acertr', 'Atru.chr4.2230' => 'acertr', 'Atru.chr4.2232' => 'acertr', 'Atru.chr5.1598' => 'acertr', 'Atru.chr5.1600' => 'acertr', 'Atru.chr5.2188' => 'acertr', 'AUR62008326' => 'cqu', 'AUR62011922' => 'cqu', 'AUR62011924' => 'cqu', 'AUR62021771' => 'cqu', 'AUR62032237' => 'cqu', 'AUR62032240' => 'cqu', 'BcaB01g05572' => 'bca', 'BcaB02g10337' => 'bca', 'BcaB04g19944' => 'bca', 'BcaB05g21548' => 'bca', 'BcaB05g21549' => 'bca', 'BcaB05g23227' => 'bca', 'BcaB06g26256' => 'bca', 'BcaB06g26257' => 'bca', 'BcaB06g28379' => 'bca', 'BcaC02g11159' => 'bca', 'BcaC03g13258' => 'bca', 'BcaC03g13259' => 'bca', 'BcaC05g24456' => 'bca', 'BcaC05g24457' => 'bca', 'BcaC07g36922' => 'bca', 'BcaC07g36923' => 'bca', 'BcaC07g42050' => 'bca', 'BcaC07g42176' => 'bca', 'BcaC07g42195' => 'bca', 'BcaC07g42196' => 'bca', 'BcaNung06674' => 'bca', 'BolC2t06351H' => 'bol', 'BolC2t06352H' => 'bol', 'BolC3t12993H' => 'bol', 'BolC4t23525H' => 'bol', 'BolC4t27475H' => 'bol', 'BolC5t29025H' => 'bol', 'BolC5t29026H' => 'bol', 'BolC8t46898H' => 'bol', 'BolC8t46899H' => 'bol', 'BolC8t52630H' => 'bol', 'BolC8t52765H' => 'bol', 'BolC9t53824H' => 'bol', 'BraA03t09760Z' => 'bra', 'BraA03t10990Z' => 'bra', 'BraA05t20413Z' => 'bra', 'BraA08t35602Z' => 'bra', 'BraA09t36458Z' => 'bra', 'BraA09t42018Z' => 'bra', 'BraA09t42129Z' => 'bra', 'BraA10t42536Z' => 'bra', 'BraA10t42537Z' => 'bra', 'C01p10690' => 'bna', 'C02p03890' => 'bna', 'C02p03900' => 'bna', 'C03p04620' => 'bna', 'C04p19870' => 'bna', 'C04p59670' => 'bna', 'C05p02460' => 'bna', 'C05p02470' => 'bna', 'C08p00980' => 'bna', 'C08p00990' => 'bna', 'C08p51030' => 'bna', 'C08p52360' => 'bna', 'C09p09120' => 'bna', 'CAN.G19.15' => 'can', 'CAN.G251.10' => 'can', 'CAN.G251.9' => 'can', 'CAN.G398.24' => 'can', 'CAN.G410.32' => 'can', 'CAN.G881.2' => 'can', 'CANSAT01G3025' => 'cansat', 'CANSAT78G1211' => 'cansat', 'CANSAT78G1218' => 'cansat', 'CANSAT78G1521' => 'cansat', 'CANSAT78G1670' => 'cansat', 'CARHR003600' => 'chi', 'CARHR003610' => 'chi', 'CARHR006290' => 'chi', 'CARHR006430' => 'chi', 'CARHR124110' => 'chi', 'CARHR203870' => 'chi', 'CARHR203880' => 'chi', 'CARHR203890' => 'chi', 'CARHR276880' => 'chi', 'Carub.0001s0346' => 'cru', 'Carub.0001s0347' => 'cru', 'Carub.0001s0607' => 'cru', 'Carub.0003s2768' => 'cru', 'Carub.0003s2769' => 'cru', 'Carub.0004s1178' => 'cru', 'Carub.0006s0806' => 'cru', 'Carub.0006s0807' => 'cru', 'Carub.0006s0808' => 'cru', 'Carub.0008s0501' => 'cru', 'Carub.0008s2379' => 'cru', 'Ca_08655_v3' => 'car', 'Ca_08922_v3' => 'car', 'Ca_08923_v3' => 'car', 'Ca_09119_v3' => 'car', 'Ca_09703_v3' => 'car', 'Ca_09705_v3' => 'car', 'Ca_09835_v3' => 'car', 'Ca_26403_v3' => 'car', 'Ca_30719_v3' => 'car', 'CBR_g17958' => 'cbr', 'CBR_g40516' => 'cbr', 'Cc00_g05350' => 'ccan', 'Cc01_g18690' => 'ccan', 'Cc03_g04830' => 'ccan', 'Cc03_g04850' => 'ccan', 'CDE02G4469' => 'cde', 'CDE06G0883' => 'cde', 'CDE06G1295' => 'cde', 'CDE06G1390' => 'cde', 'CDE07G0584' => 'cde', 'CDE07G1084' => 'cde', 'CDE08G1259' => 'cde', 'Cfa002341' => 'cfa', 'Cfa024337' => 'cfa', 'Ciclev10004749m.g' => 'ccl', 'Ciclev10006127m.g' => 'ccl', 'Ciclev10019720m.g' => 'ccl', 'Ciclev10022652m.g' => 'ccl', 'CiPaw.01G190400' => 'cil', 'CiPaw.01G190500' => 'cil', 'CiPaw.02G116400' => 'cil', 'CiPaw.02G116500' => 'cil', 'CiPaw.04G183000' => 'cil', 'CiPaw.04G183300' => 'cil', 'ClCG05G004610' => 'cla', 'ClCG05G004620' => 'cla', 'ClCG06G006730' => 'cla', 'ClCG06G006740' => 'cla', 'ClCG11G003690' => 'cla', 'COL.COLO4_08276' => 'col', 'COL.COLO4_08277' => 'col', 'COL.COLO4_15787' => 'col', 'COL.COLO4_15789' => 'col', 'Cpa.g.c44815' => 'cpa', 'Cpa.g.sc52.144' => 'cpa', 'Cpa.g.sc58.46' => 'cpa', 'Cpa.g.sc58.47' => 'cpa', 'Cre08.g360900' => 'cre', 'CsaV3_2G013030' => 'csa', 'CsaV3_2G013050' => 'csa', 'CsaV3_2G015620' => 'csa', 'CsaV3_3G012590' => 'csa', 'CsaV3_3G012600' => 'csa', 'CSS0001641' => 'camsi', 'CSS0008310' => 'camsi', 'CSS0013011' => 'camsi', 'CSS0017147' => 'camsi', 'CSS0022970' => 'camsi', 'CSS0025655' => 'camsi', 'CSS0028665' => 'camsi', 'CSS0029117' => 'camsi', 'CSS0032024' => 'camsi', 'CSS0039681' => 'camsi', 'CSS0046516' => 'camsi', 'CSS0050307' => 'camsi', 'DCAR_005871' => 'dca', 'DCAR_007342' => 'dca', 'DCAR_024228' => 'dca', 'DCAR_027277' => 'dca', 'DCAR_030718' => 'dca', 'Dinv20287' => 'din', 'Dinv22461' => 'din', 'Dinv22464' => 'din', 'Dinv29912' => 'din', 'Dinv29913' => 'din', 'Dinv34580' => 'din', 'Dinv34582' => 'din', 'Dinv44632' => 'din', 'Duzib052G0266' => 'dzi', 'Duzib133G0907' => 'dzi', 'Duzib133G1034' => 'dzi', 'Duzib138G0207' => 'dzi', 'Duzib138G0491' => 'dzi', 'Duzib151G0812' => 'dzi', 'Duzib151G1166' => 'dzi', 'Duzib168G0192' => 'dzi', 'Duzib211G0077' => 'dzi', 'Duzib212G0429' => 'dzi', 'Duzib212G0472' => 'dzi', 'ECA233G2617' => 'eca', 'ECA236G4188' => 'eca', 'ECA240G0936' => 'eca', 'ECA240G1129' => 'eca', 'ECA247G0623' => 'eca', 'EL10Ac5g10451' => 'bvu', 'EL10Ac5g10453' => 'bvu', 'EL10Ac5g10894' => 'bvu', 'Eucgr.H00192' => 'egr', 'Eucgr.H00193' => 'egr', 'Eucgr.H00194' => 'egr', 'Eucgr.J01562' => 'egr', 'Eucgr.K03301' => 'egr', 'FAN02G0632' => 'fan', 'FAN05G5378' => 'fan', 'FAN09G3247' => 'fan', 'FAN12G0435' => 'fan', 'FAN12G2426' => 'fan', 'FAN14G1707' => 'fan', 'FAN14G4725' => 'fan', 'FAN15G2071' => 'fan', 'FAN17G3065' => 'fan', 'FAN19G1376' => 'fan', 'FAN20G0354' => 'fan', 'FAN20G2429' => 'fan', 'FAN20G2658' => 'fan', 'FAN24G2343' => 'fan', 'FAN27G2362' => 'fan', 'FAN28G1765' => 'fan', 'FvH4_1g16020' => 'fve', 'FvH4_2g04890' => 'fve', 'FvH4_2g22270' => 'fve', 'FvH4_4g02630' => 'fve', 'FvH4_4g02640' => 'fve', 'FvH4_6g02650' => 'fve', 'Glyma.02G140600' => 'gma', 'Glyma.03G159900' => 'gma', 'Glyma.05G234800' => 'gma', 'Glyma.07G269600' => 'gma', 'Glyma.08G042300' => 'gma', 'Glyma.10G033500' => 'gma', 'Glyma.10G185200' => 'gma', 'Glyma.17G004300' => 'gma', 'Glyma.19G161900' => 'gma', 'Glyma.20G205100' => 'gma', 'Glyma.20G205200' => 'gma', 'Gohir.A01G139101' => 'ghi', 'Gohir.A02G035600' => 'ghi', 'Gohir.A02G117901' => 'ghi', 'Gohir.A07G210100' => 'ghi', 'Gohir.A07G210200' => 'ghi', 'Gohir.A08G061100' => 'ghi', 'Gohir.A09G223000' => 'ghi', 'Gohir.A09G223100' => 'ghi', 'Gohir.A10G113900' => 'ghi', 'Gohir.A10G114000' => 'ghi', 'Gohir.D02G042300' => 'ghi', 'Gohir.D07G216100' => 'ghi', 'Gohir.D07G216200' => 'ghi', 'Gohir.D08G070400' => 'ghi', 'Gohir.D09G225000' => 'ghi', 'Gohir.D09G225100' => 'ghi', 'Gohir.D10G152300' => 'ghi', 'Gohir.D10G153200' => 'ghi', 'Gohir.D11G133701' => 'ghi', 'Gorai.004G074100' => 'gra', 'Gorai.005G046800' => 'gra', 'Gorai.006G246500' => 'gra', 'Gorai.006G246600' => 'gra', 'Gorai.007G142900' => 'gra', 'Gorai.011G171000' => 'gra', 'Gorai.011G171100' => 'gra', 'Gorai.013G104300' => 'gra', 'Gorai.013G104400' => 'gra', 'GSVIVG01000754001' => 'vvi', 'GSVIVG01000756001' => 'vvi', 'GSVIVG01010903001' => 'vvi', 'GSVIVG01017623001' => 'vvi', 'GSVIVG01018113001' => 'vvi', 'GSVIVG01018116001' => 'vvi', 'GSVIVG01018118001' => 'vvi', 'HanXRQChr03g0076211' => 'han', 'HanXRQChr03g0092431' => 'han', 'HanXRQChr03g0092441' => 'han', 'HanXRQChr03g0092591' => 'han', 'HanXRQChr03g0092671' => 'han', 'HanXRQChr03g0092681' => 'han', 'HanXRQChr03g0092691' => 'han', 'HanXRQChr03g0092701' => 'han', 'HanXRQChr03g0092721' => 'han', 'HanXRQChr03g0092731' => 'han', 'HanXRQChr04g0113681' => 'han', 'HanXRQChr10g0281371' => 'han', 'HanXRQChr11g0337141' => 'han', 'HanXRQChr13g0424521' => 'han', 'HanXRQChr13g0424531' => 'han', 'HanXRQChr13g0424541' => 'han', 'HanXRQChr16g0498221' => 'han', 'Haze_04377' => 'cav', 'Haze_11298' => 'cav', 'Haze_24547' => 'cav', 'Haze_24550' => 'cav', 'Haze_26587' => 'cav', 'Hma1.2p1_0650F.1_g195410' => 'hma', 'Hma1.2p1_0893F.1_g233470' => 'hma', 'HPP92_006508' => 'vpl', 'HPP92_024780' => 'vpl', 'Hund02688' => 'sun', 'Hund09380' => 'sun', 'Hund09381' => 'sun', 'Hund09832' => 'sun', 'Hund09833' => 'sun', 'Hund11351' => 'sun', 'Hund11513' => 'sun', 'Lalb_Chr06g0162591' => 'lal', 'Lalb_Chr06g0162601' => 'lal', 'Lalb_Chr06g0169321' => 'lal', 'Lalb_Chr09g0330951' => 'lal', 'Lalb_Chr16g0387631' => 'lal', 'Lalb_Chr21g0306241' => 'lal', 'Lalb_Chr25g0290051' => 'lal', 'Lalb_Chr25g0290061' => 'lal', 'Lalb_Chr25g0290071' => 'lal', 'Lj1g0003876' => 'lja', 'Lj1P1207T36' => 'lonja', 'Lj2C1156G12' => 'lonja', 'Lj3A793G39' => 'lonja', 'Lj3C580G2' => 'lonja', 'Lj3C780G2' => 'lonja', 'Lj3C780T4' => 'lonja', 'Lj3C793G9' => 'lonja', 'Lj4g0012960' => 'lja', 'Lj5g0021252' => 'lja', 'Lj5g0021484' => 'lja', 'Lj5g0024528' => 'lja', 'Lj6A399T12' => 'lonja', 'Lj6A656G65' => 'lonja', 'Lsat_1_v5_gn_3_125500' => 'lsa', 'Lsat_1_v5_gn_3_125540' => 'lsa', 'Lsat_1_v5_gn_5_72701' => 'lsa', 'Lsat_1_v5_gn_8_91560' => 'lsa', 'Lsat_1_v5_gn_9_9640' => 'lsa', 'Manes.01G200600' => 'mes', 'Manes.01G200700' => 'mes', 'Manes.03G168900' => 'mes', 'Manes.03G169000' => 'mes', 'Manes.05G085801' => 'mes', 'Manes.05G086200' => 'mes', 'Manes.15G036700' => 'mes', 'Manes.15G036900' => 'mes', 'Mapoly0004s0172' => 'mpo', 'Mapoly0023s0001' => 'mpo', 'Mapoly0142s0012' => 'mpo', 'MBI01_g32854_MAGBIO' => 'mbi', 'MBI11_g24427_MAGBIO' => 'mbi', 'MBI11_g47319_MAGBIO' => 'mbi', 'MCO01G433' => 'mco', 'MD00G1187800' => 'mdo', 'MD04G1226500' => 'mdo', 'MD05G1203900' => 'mdo', 'MD10G1191100' => 'mdo', 'MD12G1243500' => 'mdo', 'MD13G1207000' => 'mdo', 'MD13G1207100' => 'mdo', 'MD16G1208600' => 'mdo', 'Medtr1g050352' => 'mtr', 'Medtr1g070385' => 'mtr', 'Medtr1g070450' => 'mtr', 'Medtr1g075200' => 'mtr', 'Medtr1g075250' => 'mtr', 'Medtr1g075260' => 'mtr', 'Medtr1g475250' => 'mtr', 'Medtr4g075450' => 'mtr', 'Medtr7g096300' => 'mtr', 'Medtr8g105110' => 'mtr', 'MELO3C006470.2' => 'cme', 'MELO3C006471.2' => 'cme', 'MELO3C020772.2' => 'cme', 'MELO3C026780.2' => 'cme', 'MELO3C026781.2' => 'cme', 'Migut.D00390' => 'egut', 'Migut.G00435' => 'egut', 'Migut.G00436' => 'egut', 'Migut.G00718' => 'egut', 'MSTRG.21891' => 'ama', 'MSTRG.26910' => 'ama', 'MSTRG.4099' => 'ama', 'MSTRG.9925' => 'ama', 'Nitab4.5_0000165g0010' => 'nta', 'Nitab4.5_0000209g0180' => 'nta', 'Nitab4.5_0000244g0440' => 'nta', 'Nitab4.5_0000525g0220' => 'nta', 'Nitab4.5_0001597g0020' => 'nta', 'Nitab4.5_0001878g0040' => 'nta', 'Nitab4.5_0001878g0060' => 'nta', 'Nitab4.5_0002838g0100' => 'nta', 'Nitab4.5_0002838g0120' => 'nta', 'Nitab4.5_0004798g0030' => 'nta', 'Nitab4.5_0005420g0010' => 'nta', 'Nitab4.5_0005507g0010' => 'nta', 'Nitab4.5_0005574g0020' => 'nta', 'Nitab4.5_0005838g0010' => 'nta', 'Nitab4.5_0010580g0020' => 'nta', 'Nn1g02599' => 'nnu', 'Nn1g02608' => 'nnu', 'Nn3g17742' => 'nnu', 'Nn3g19534' => 'nnu', 'Nn3g19535' => 'nnu', 'Oeu008790.1' => 'oeu', 'Oeu008792.1' => 'oeu', 'Oeu032590.1' => 'oeu', 'Oeu035349.1' => 'oeu', 'Oeu049791.1' => 'oeu', 'Os01g0774500' => 'osa', 'Os03g0628800' => 'osa', 'Os03g0798600' => 'osa', 'Os05g0508800' => 'osa', 'Peaxi162Scf00036g02018' => 'pax', 'Peaxi162Scf00578g00032' => 'pax', 'Peaxi162Scf00578g00317' => 'pax', 'Peaxi162Scf00785g00114' => 'pax', 'Peaxi162Scf00813g00119' => 'pax', 'Peaxi162Scf00906g00227' => 'pax', 'PGR004G0875' => 'pgr', 'PGR004G2424' => 'pgr', 'PGR031G1239' => 'pgr', 'PGR031G2474' => 'pgr', 'PGR044G0423' => 'pgr', 'PGSC0003DMG400001128' => 'stu', 'PGSC0003DMG400007336' => 'stu', 'PGSC0003DMG400016318' => 'stu', 'PGSC0003DMG400016319' => 'stu', 'PGSC0003DMG400018074' => 'stu', 'Phvul.001G157700' => 'pvu', 'Phvul.002G148550' => 'pvu', 'Phvul.002G320200' => 'pvu', 'Phvul.003G089200' => 'pvu', 'Phvul.007G126000' => 'pvu', 'Phvul.007G126100' => 'pvu', 'Phvul.007G178000' => 'pvu', 'Phvul.007G178200' => 'pvu', 'Potri.002G043000' => 'ptr', 'Potri.002G043200' => 'ptr', 'Potri.003G123750' => 'ptr', 'Potri.005G055401' => 'ptr', 'Potri.005G219700' => 'ptr', 'Potri.005G220000' => 'ptr', 'Potri.008G161901' => 'ptr', 'Potri.008G162000' => 'ptr', 'Potri.008G162400' => 'ptr', 'Potri.010G076900' => 'ptr', 'Pp3c12_9180' => 'ppa', 'Pp3c13_19770' => 'ppa', 'Pp3c14_22950' => 'ppa', 'Pp3c16_12160' => 'ppa', 'Pp3c27_7820' => 'ppa', 'Pp3c2_3490' => 'ppa', 'Pp3c3_23700' => 'ppa', 'Pp3c3_36520' => 'ppa', 'Pp3c4_15250' => 'ppa', 'PRCOL_00007002' => 'pco', 'Prupe.1G030600' => 'ppe', 'Prupe.1G030700' => 'ppe', 'Prupe.6G345200' => 'ppe', 'Prupe.8G230300' => 'ppe', 'Prupe.8G230500' => 'ppe', 'Psat3g059600' => 'psa', 'Psat5g200920' => 'psa', 'Psat6g056440' => 'psa', 'Psat6g057360' => 'psa', 'Psat6g134120' => 'psa', 'Psat6g134160' => 'psa', 'Psat7g008640' => 'psa', 'Psat7g185240' => 'psa', 'PSO017G1330' => 'pso', 'PSO063G6097' => 'pso', 'PSO170G0835' => 'pso', 'PSO170G2499' => 'pso', 'PSO210G5058' => 'pso', 'PSO210G6154' => 'pso', 'PSO585G0031' => 'pso', 'PSO832G0264' => 'pso', 'PSO832G4288' => 'pso', 'QL03p027355' => 'qlo', 'QL03p027430' => 'qlo', 'QL04p081380' => 'qlo', 'QL06p015642' => 'qlo', 'QL06p015650' => 'qlo', 'QL06p015686' => 'qlo', 'QL12p042927' => 'qlo', 'QL93p1863_0035' => 'qlo', 'RcHm_v2.0_Chr3g0450581' => 'rch', 'RcHm_v2.0_Chr4g0390371' => 'rch', 'RcHm_v2.0_Chr4g0390381' => 'rch', 'RcHm_v2.0_Chr4g0390491' => 'rch', 'RcHm_v2.0_Chr4g0390501' => 'rch', 'RcHm_v2.0_Chr6g0289231' => 'rch', 'Rhsim04G0190400' => 'rsi', 'Rhsim04G0190500' => 'rsi', 'Rhsim04G0190600' => 'rsi', 'Rhsim13G0031400' => 'rsi', 'Rhsim13G0165600' => 'rsi', 'RhsimUnG0114600' => 'rsi', 'RhsimUnG0114700' => 'rsi', 'Sabra02G0034800' => 'sbr', 'Sabra02G0035100' => 'sbr', 'Sabra05G0168600' => 'sbr', 'Sabra05G0168800' => 'sbr', 'Sabra08G0123700' => 'sbr', 'Sabra10G0031900' => 'sbr', 'Sabra13G0039000' => 'sbr', 'SalBow2G0782' => 'sbo', 'SalBow2G1403' => 'sbo', 'SalBow4G0074' => 'sbo', 'SalBow4G2635' => 'sbo', 'SalBow5G3010' => 'sbo', 'Sc05g0000870' => 'sci', 'Sc05g0000890' => 'sci', 'Sc13g0005000' => 'sci', 'Sc13g0005030' => 'sci', 'Sc19g0003790' => 'sci', 'Sc19g0003800' => 'sci', 'Sed0003467' => 'sed', 'Sed0009355' => 'sed', 'Sed0009894' => 'sed', 'Sed0011972' => 'sed', 'Sed0021483' => 'sed', 'Sed0021750' => 'sed', 'Sed0026279' => 'sed', 'SEGI_05312' => 'sgi', 'SEGI_10112' => 'sgi', 'SEGI_15835' => 'sgi', 'SEGI_30386' => 'sgi', 'SEGI_34122' => 'sgi', 'SEGI_35063' => 'sgi', 'SGA_v2.0_scaffold101G29794' => 'sas', 'SGA_v2.0_scaffold1G00573' => 'sas', 'SGA_v2.0_scaffold79G25637' => 'sas', 'SGA_v2.0_scaffold88G27283' => 'sas', 'SGA_v2.0_scaffold88G27285' => 'sas', 'SGA_v2.0_scaffold88G27331' => 'sas', 'SHI09937' => 'shi', 'SMO119G0302' => 'smo', 'SMO137G0231' => 'smo', 'SMO367G1151' => 'smo', 'Solyc02g082000.3' => 'sly', 'Solyc06g031670.3' => 'sly', 'Solyc06g053810.3' => 'sly', 'Solyc07g025457.1' => 'sly', 'Solyc08g059740.1' => 'sly', 'Solyc08g059750.3' => 'sly', 'Solyc09g083370.3' => 'sly', 'Solyc12g038950.3' => 'sly', 'Sopen02g026630' => 'spe', 'Sopen06g018930' => 'spe', 'Sopen06g018940' => 'spe', 'Sopen08g009460' => 'spe', 'Sopen09g032290' => 'spe', 'Sp1g03080' => 'spa', 'Sp1g03090' => 'spa', 'Sp1g05480' => 'spa', 'Sp2g07860' => 'spa', 'Sp2g08430' => 'spa', 'Sp2g08440' => 'spa', 'Sp2g26200' => 'spa', 'Sp4g13170' => 'spa', 'Sp6g33840' => 'spa', 'SpUn1204_0010' => 'spa', 'TAR365G0908' => 'tar', 'TAR381G1270' => 'tar', 'TAR381G1651' => 'tar', 'TAR625G1131' => 'tar', 'TAR633G0962' => 'tar', 'TAR633G1729' => 'tar', 'TAR633G1864' => 'tar', 'TAR636G0221' => 'tar', 'TAR636G0314' => 'tar', 'TAR636G3202' => 'tar', 'THA.LOC104800805' => 'tha', 'THA.LOC104801096' => 'tha', 'THA.LOC104801555' => 'tha', 'THA.LOC104808491' => 'tha', 'THA.LOC104808595' => 'tha', 'THA.LOC104815985' => 'tha', 'THA.LOC104822250' => 'tha', 'THA.LOC104826071' => 'tha', 'Thecc.01G265200' => 'tca', 'Thecc.01G265300' => 'tca', 'Thecc.01G265700' => 'tca', 'Thecc.03G109100' => 'tca', 'Thecc.04G245900' => 'tca', 'Thecc.04G246000' => 'tca', 'Thhalv10003334m.g' => 'esa', 'Thhalv10005508m.g' => 'esa', 'Thhalv10005643m.g' => 'esa', 'Thhalv10007316m.g' => 'esa', 'Thhalv10009006m.g' => 'esa', 'Thhalv10009309m.g' => 'esa', 'Thhalv10014917m.g' => 'esa', 'Thhalv10014919m.g' => 'esa', 'Thhalv10015393m.g' => 'esa', 'Thhalv10016515m.g' => 'esa', 'Thhalv10029242m.g' => 'esa', 'TPR.G16654' => 'tpr', 'TPR.G20589' => 'tpr', 'TPR.G23029' => 'tpr', 'TPR.G27731' => 'tpr', 'TPR.G28889' => 'tpr', 'TPR.G28899' => 'tpr', 'TPR.G30846' => 'tpr', 'TPR.G5452' => 'tpr', 'TPR.G5713' => 'tpr', 'TPR.G9046' => 'tpr', 'TPR.G9061' => 'tpr', 'TWI09G1075' => 'twi', 'TWI12G0806' => 'twi', 'TWI18G0108' => 'twi', 'TWI53G1361' => 'twi', 'TWI73G0185' => 'twi', 'TWI73G0427' => 'twi', 'unitig_37.g12001' => 'ugi', 'unitig_747.g21660' => 'ugi', 'unitig_748.g7232' => 'ugi', 'unitig_748.g7315' => 'ugi', 'unitig_85.g27262' => 'ugi', 'unitig_92.g28220' => 'ugi', 'vmacro02632' => 'vma', 'vmacro08410' => 'vma', 'vmacro08411' => 'vma', 'vmacro15407' => 'vma', 'VMungo0251G3619' => 'vmu', 'VMungo0720G1204' => 'vmu', 'VMungo0720G1918' => 'vmu', 'VMungo0720G2387' => 'vmu', 'VMungo0720G2961' => 'vmu', 'VMungo1215G2154' => 'vmu', 'VMungo1383G2411' => 'vmu', 'Zm00001eb051130' => 'zma', 'Zm00001eb116830' => 'zma', 'Zm00001eb116850' => 'zma', 'Zm00001eb151740' => 'zma', 'Zm00001eb292360' => 'zma', 'Zm00001eb301640' => 'zma' ), 'gf_id' => 'HOM05D000856', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000856' ), 'data_identifier' => 'HOM05D000856', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000856', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p00010' => 'bna', 'A03p04160' => 'bna', 'A03p17160' => 'bna', 'A04p23370' => 'bna', 'A05p14860' => 'bna', 'A08p37020' => 'bna', 'A09p08050' => 'bna', 'A09p66800' => 'bna', 'A09p67940' => 'bna', 'A10p02680' => 'bna', 'A10p05320' => 'bna', 'Aa31LG1G20560' => 'aar', 'Aa31LG1G20610' => 'aar', 'Aa31LG1G7810' => 'aar', 'Aa31LG5G3590' => 'aar', 'Aa31LG5G6140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3819' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4683' => 'aag', 'Actinidia04480' => 'ach', 'Actinidia05466' => 'ach', 'Actinidia08445' => 'ach', 'Actinidia21170' => 'ach', 'Actinidia24812' => 'ach', 'Actinidia24951' => 'ach', 'Actinidia40088' => 'ach', 'Ah.02g111660' => 'amhyb', 'Ah.11g048900' => 'amhyb', 'Ah.11g049910' => 'amhyb', 'AL1G13870' => 'aly', 'AL1G13880' => 'aly', 'AL1G16760' => 'aly', 'AL390U10020' => 'aly', 'AL4G25520' => 'aly', 'AL6G19890' => 'aly', 'AL6G19900' => 'aly', 'AL6G19910' => 'aly', 'AL8G40100' => 'aly', 'Aqoxy2G03562' => 'aox', 'Aqoxy5G00316' => 'aox', 'Aqoxy5G00926' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1628KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1H403S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2FU6SJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.882I6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8YRY2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YN1SN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AF70II' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZA8L1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F916KL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHRD8H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KTZ8QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S22EMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8M29T' => 'arhy', 'AT1G04270' => 'ath', 'AT1G04280' => 'ath', 'AT1G06750' => 'ath', 'AT1G33850' => 'ath', 'AT2G30630' => 'ath', 'AT5G09490' => 'ath', 'AT5G09500' => 'ath', 'AT5G09510' => 'ath', 'AT5G43640' => 'ath', 'AT5G63070' => 'ath', 'ATR0605G315' => 'atr', 'Atru.chr11.175' => 'acertr', 'Atru.chr11.653' => 'acertr', 'Atru.chr3.1616' => 'acertr', 'Atru.chr4.2230' => 'acertr', 'Atru.chr4.2232' => 'acertr', 'Atru.chr5.1598' => 'acertr', 'Atru.chr5.1600' => 'acertr', 'Atru.chr5.2188' => 'acertr', 'AUR62008326' => 'cqu', 'AUR62011922' => 'cqu', 'AUR62011924' => 'cqu', 'AUR62021771' => 'cqu', 'AUR62032237' => 'cqu', 'AUR62032240' => 'cqu', 'BcaB01g05572' => 'bca', 'BcaB02g10337' => 'bca', 'BcaB04g19944' => 'bca', 'BcaB05g21548' => 'bca', 'BcaB05g21549' => 'bca', 'BcaB05g23227' => 'bca', 'BcaB06g26256' => 'bca', 'BcaB06g26257' => 'bca', 'BcaB06g28379' => 'bca', 'BcaC02g11159' => 'bca', 'BcaC03g13258' => 'bca', 'BcaC03g13259' => 'bca', 'BcaC05g24456' => 'bca', 'BcaC05g24457' => 'bca', 'BcaC07g36922' => 'bca', 'BcaC07g36923' => 'bca', 'BcaC07g42050' => 'bca', 'BcaC07g42176' => 'bca', 'BcaC07g42195' => 'bca', 'BcaC07g42196' => 'bca', 'BcaNung06674' => 'bca', 'BolC2t06351H' => 'bol', 'BolC2t06352H' => 'bol', 'BolC3t12993H' => 'bol', 'BolC4t23525H' => 'bol', 'BolC4t27475H' => 'bol', 'BolC5t29025H' => 'bol', 'BolC5t29026H' => 'bol', 'BolC8t46898H' => 'bol', 'BolC8t46899H' => 'bol', 'BolC8t52630H' => 'bol', 'BolC8t52765H' => 'bol', 'BolC9t53824H' => 'bol', 'BraA03t09760Z' => 'bra', 'BraA03t10990Z' => 'bra', 'BraA05t20413Z' => 'bra', 'BraA08t35602Z' => 'bra', 'BraA09t36458Z' => 'bra', 'BraA09t42018Z' => 'bra', 'BraA09t42129Z' => 'bra', 'BraA10t42536Z' => 'bra', 'BraA10t42537Z' => 'bra', 'C01p10690' => 'bna', 'C02p03890' => 'bna', 'C02p03900' => 'bna', 'C03p04620' => 'bna', 'C04p19870' => 'bna', 'C04p59670' => 'bna', 'C05p02460' => 'bna', 'C05p02470' => 'bna', 'C08p00980' => 'bna', 'C08p00990' => 'bna', 'C08p51030' => 'bna', 'C08p52360' => 'bna', 'C09p09120' => 'bna', 'CAN.G19.15' => 'can', 'CAN.G251.10' => 'can', 'CAN.G251.9' => 'can', 'CAN.G398.24' => 'can', 'CAN.G410.32' => 'can', 'CAN.G881.2' => 'can', 'CANSAT01G3025' => 'cansat', 'CANSAT78G1211' => 'cansat', 'CANSAT78G1218' => 'cansat', 'CANSAT78G1521' => 'cansat', 'CANSAT78G1670' => 'cansat', 'CARHR003600' => 'chi', 'CARHR003610' => 'chi', 'CARHR006290' => 'chi', 'CARHR006430' => 'chi', 'CARHR124110' => 'chi', 'CARHR203870' => 'chi', 'CARHR203880' => 'chi', 'CARHR203890' => 'chi', 'CARHR276880' => 'chi', 'Carub.0001s0346' => 'cru', 'Carub.0001s0347' => 'cru', 'Carub.0001s0607' => 'cru', 'Carub.0003s2768' => 'cru', 'Carub.0003s2769' => 'cru', 'Carub.0004s1178' => 'cru', 'Carub.0006s0806' => 'cru', 'Carub.0006s0807' => 'cru', 'Carub.0006s0808' => 'cru', 'Carub.0008s0501' => 'cru', 'Carub.0008s2379' => 'cru', 'Ca_08655_v3' => 'car', 'Ca_08922_v3' => 'car', 'Ca_08923_v3' => 'car', 'Ca_09119_v3' => 'car', 'Ca_09703_v3' => 'car', 'Ca_09705_v3' => 'car', 'Ca_09835_v3' => 'car', 'Ca_26403_v3' => 'car', 'Ca_30719_v3' => 'car', 'CBR_g17958' => 'cbr', 'CBR_g40516' => 'cbr', 'Cc00_g05350' => 'ccan', 'Cc01_g18690' => 'ccan', 'Cc03_g04830' => 'ccan', 'Cc03_g04850' => 'ccan', 'CDE02G4469' => 'cde', 'CDE06G0883' => 'cde', 'CDE06G1295' => 'cde', 'CDE06G1390' => 'cde', 'CDE07G0584' => 'cde', 'CDE07G1084' => 'cde', 'CDE08G1259' => 'cde', 'Cfa002341' => 'cfa', 'Cfa024337' => 'cfa', 'Ciclev10004749m.g' => 'ccl', 'Ciclev10006127m.g' => 'ccl', 'Ciclev10019720m.g' => 'ccl', 'Ciclev10022652m.g' => 'ccl', 'CiPaw.01G190400' => 'cil', 'CiPaw.01G190500' => 'cil', 'CiPaw.02G116400' => 'cil', 'CiPaw.02G116500' => 'cil', 'CiPaw.04G183000' => 'cil', 'CiPaw.04G183300' => 'cil', 'ClCG05G004610' => 'cla', 'ClCG05G004620' => 'cla', 'ClCG06G006730' => 'cla', 'ClCG06G006740' => 'cla', 'ClCG11G003690' => 'cla', 'COL.COLO4_08276' => 'col', 'COL.COLO4_08277' => 'col', 'COL.COLO4_15787' => 'col', 'COL.COLO4_15789' => 'col', 'Cpa.g.c44815' => 'cpa', 'Cpa.g.sc52.144' => 'cpa', 'Cpa.g.sc58.46' => 'cpa', 'Cpa.g.sc58.47' => 'cpa', 'Cre08.g360900' => 'cre', 'CsaV3_2G013030' => 'csa', 'CsaV3_2G013050' => 'csa', 'CsaV3_2G015620' => 'csa', 'CsaV3_3G012590' => 'csa', 'CsaV3_3G012600' => 'csa', 'CSS0001641' => 'camsi', 'CSS0008310' => 'camsi', 'CSS0013011' => 'camsi', 'CSS0017147' => 'camsi', 'CSS0022970' => 'camsi', 'CSS0025655' => 'camsi', 'CSS0028665' => 'camsi', 'CSS0029117' => 'camsi', 'CSS0032024' => 'camsi', 'CSS0039681' => 'camsi', 'CSS0046516' => 'camsi', 'CSS0050307' => 'camsi', 'DCAR_005871' => 'dca', 'DCAR_007342' => 'dca', 'DCAR_024228' => 'dca', 'DCAR_027277' => 'dca', 'DCAR_030718' => 'dca', 'Dinv20287' => 'din', 'Dinv22461' => 'din', 'Dinv22464' => 'din', 'Dinv29912' => 'din', 'Dinv29913' => 'din', 'Dinv34580' => 'din', 'Dinv34582' => 'din', 'Dinv44632' => 'din', 'Duzib052G0266' => 'dzi', 'Duzib133G0907' => 'dzi', 'Duzib133G1034' => 'dzi', 'Duzib138G0207' => 'dzi', 'Duzib138G0491' => 'dzi', 'Duzib151G0812' => 'dzi', 'Duzib151G1166' => 'dzi', 'Duzib168G0192' => 'dzi', 'Duzib211G0077' => 'dzi', 'Duzib212G0429' => 'dzi', 'Duzib212G0472' => 'dzi', 'ECA233G2617' => 'eca', 'ECA236G4188' => 'eca', 'ECA240G0936' => 'eca', 'ECA240G1129' => 'eca', 'ECA247G0623' => 'eca', 'EL10Ac5g10451' => 'bvu', 'EL10Ac5g10453' => 'bvu', 'EL10Ac5g10894' => 'bvu', 'Eucgr.H00192' => 'egr', 'Eucgr.H00193' => 'egr', 'Eucgr.H00194' => 'egr', 'Eucgr.J01562' => 'egr', 'Eucgr.K03301' => 'egr', 'FAN02G0632' => 'fan', 'FAN05G5378' => 'fan', 'FAN09G3247' => 'fan', 'FAN12G0435' => 'fan', 'FAN12G2426' => 'fan', 'FAN14G1707' => 'fan', 'FAN14G4725' => 'fan', 'FAN15G2071' => 'fan', 'FAN17G3065' => 'fan', 'FAN19G1376' => 'fan', 'FAN20G0354' => 'fan', 'FAN20G2429' => 'fan', 'FAN20G2658' => 'fan', 'FAN24G2343' => 'fan', 'FAN27G2362' => 'fan', 'FAN28G1765' => 'fan', 'FvH4_1g16020' => 'fve', 'FvH4_2g04890' => 'fve', 'FvH4_2g22270' => 'fve', 'FvH4_4g02630' => 'fve', 'FvH4_4g02640' => 'fve', 'FvH4_6g02650' => 'fve', 'Glyma.02G140600' => 'gma', 'Glyma.03G159900' => 'gma', 'Glyma.05G234800' => 'gma', 'Glyma.07G269600' => 'gma', 'Glyma.08G042300' => 'gma', 'Glyma.10G033500' => 'gma', 'Glyma.10G185200' => 'gma', 'Glyma.17G004300' => 'gma', 'Glyma.19G161900' => 'gma', 'Glyma.20G205100' => 'gma', 'Glyma.20G205200' => 'gma', 'Gohir.A01G139101' => 'ghi', 'Gohir.A02G035600' => 'ghi', 'Gohir.A02G117901' => 'ghi', 'Gohir.A07G210100' => 'ghi', 'Gohir.A07G210200' => 'ghi', 'Gohir.A08G061100' => 'ghi', 'Gohir.A09G223000' => 'ghi', 'Gohir.A09G223100' => 'ghi', 'Gohir.A10G113900' => 'ghi', 'Gohir.A10G114000' => 'ghi', 'Gohir.D02G042300' => 'ghi', 'Gohir.D07G216100' => 'ghi', 'Gohir.D07G216200' => 'ghi', 'Gohir.D08G070400' => 'ghi', 'Gohir.D09G225000' => 'ghi', 'Gohir.D09G225100' => 'ghi', 'Gohir.D10G152300' => 'ghi', 'Gohir.D10G153200' => 'ghi', 'Gohir.D11G133701' => 'ghi', 'Gorai.004G074100' => 'gra', 'Gorai.005G046800' => 'gra', 'Gorai.006G246500' => 'gra', 'Gorai.006G246600' => 'gra', 'Gorai.007G142900' => 'gra', 'Gorai.011G171000' => 'gra', 'Gorai.011G171100' => 'gra', 'Gorai.013G104300' => 'gra', 'Gorai.013G104400' => 'gra', 'GSVIVG01000754001' => 'vvi', 'GSVIVG01000756001' => 'vvi', 'GSVIVG01010903001' => 'vvi', 'GSVIVG01017623001' => 'vvi', 'GSVIVG01018113001' => 'vvi', 'GSVIVG01018116001' => 'vvi', 'GSVIVG01018118001' => 'vvi', 'HanXRQChr03g0076211' => 'han', 'HanXRQChr03g0092431' => 'han', 'HanXRQChr03g0092441' => 'han', 'HanXRQChr03g0092591' => 'han', 'HanXRQChr03g0092671' => 'han', 'HanXRQChr03g0092681' => 'han', 'HanXRQChr03g0092691' => 'han', 'HanXRQChr03g0092701' => 'han', 'HanXRQChr03g0092721' => 'han', 'HanXRQChr03g0092731' => 'han', 'HanXRQChr04g0113681' => 'han', 'HanXRQChr10g0281371' => 'han', 'HanXRQChr11g0337141' => 'han', 'HanXRQChr13g0424521' => 'han', 'HanXRQChr13g0424531' => 'han', 'HanXRQChr13g0424541' => 'han', 'HanXRQChr16g0498221' => 'han', 'Haze_04377' => 'cav', 'Haze_11298' => 'cav', 'Haze_24547' => 'cav', 'Haze_24550' => 'cav', 'Haze_26587' => 'cav', 'Hma1.2p1_0650F.1_g195410' => 'hma', 'Hma1.2p1_0893F.1_g233470' => 'hma', 'HPP92_006508' => 'vpl', 'HPP92_024780' => 'vpl', 'Hund02688' => 'sun', 'Hund09380' => 'sun', 'Hund09381' => 'sun', 'Hund09832' => 'sun', 'Hund09833' => 'sun', 'Hund11351' => 'sun', 'Hund11513' => 'sun', 'Lalb_Chr06g0162591' => 'lal', 'Lalb_Chr06g0162601' => 'lal', 'Lalb_Chr06g0169321' => 'lal', 'Lalb_Chr09g0330951' => 'lal', 'Lalb_Chr16g0387631' => 'lal', 'Lalb_Chr21g0306241' => 'lal', 'Lalb_Chr25g0290051' => 'lal', 'Lalb_Chr25g0290061' => 'lal', 'Lalb_Chr25g0290071' => 'lal', 'Lj1g0003876' => 'lja', 'Lj1P1207T36' => 'lonja', 'Lj2C1156G12' => 'lonja', 'Lj3A793G39' => 'lonja', 'Lj3C580G2' => 'lonja', 'Lj3C780G2' => 'lonja', 'Lj3C780T4' => 'lonja', 'Lj3C793G9' => 'lonja', 'Lj4g0012960' => 'lja', 'Lj5g0021252' => 'lja', 'Lj5g0021484' => 'lja', 'Lj5g0024528' => 'lja', 'Lj6A399T12' => 'lonja', 'Lj6A656G65' => 'lonja', 'Lsat_1_v5_gn_3_125500' => 'lsa', 'Lsat_1_v5_gn_3_125540' => 'lsa', 'Lsat_1_v5_gn_5_72701' => 'lsa', 'Lsat_1_v5_gn_8_91560' => 'lsa', 'Lsat_1_v5_gn_9_9640' => 'lsa', 'Manes.01G200600' => 'mes', 'Manes.01G200700' => 'mes', 'Manes.03G168900' => 'mes', 'Manes.03G169000' => 'mes', 'Manes.05G085801' => 'mes', 'Manes.05G086200' => 'mes', 'Manes.15G036700' => 'mes', 'Manes.15G036900' => 'mes', 'Mapoly0004s0172' => 'mpo', 'Mapoly0023s0001' => 'mpo', 'Mapoly0142s0012' => 'mpo', 'MBI01_g32854_MAGBIO' => 'mbi', 'MBI11_g24427_MAGBIO' => 'mbi', 'MBI11_g47319_MAGBIO' => 'mbi', 'MCO01G433' => 'mco', 'MD00G1187800' => 'mdo', 'MD04G1226500' => 'mdo', 'MD05G1203900' => 'mdo', 'MD10G1191100' => 'mdo', 'MD12G1243500' => 'mdo', 'MD13G1207000' => 'mdo', 'MD13G1207100' => 'mdo', 'MD16G1208600' => 'mdo', 'Medtr1g050352' => 'mtr', 'Medtr1g070385' => 'mtr', 'Medtr1g070450' => 'mtr', 'Medtr1g075200' => 'mtr', 'Medtr1g075250' => 'mtr', 'Medtr1g075260' => 'mtr', 'Medtr1g475250' => 'mtr', 'Medtr4g075450' => 'mtr', 'Medtr7g096300' => 'mtr', 'Medtr8g105110' => 'mtr', 'MELO3C006470.2' => 'cme', 'MELO3C006471.2' => 'cme', 'MELO3C020772.2' => 'cme', 'MELO3C026780.2' => 'cme', 'MELO3C026781.2' => 'cme', 'Migut.D00390' => 'egut', 'Migut.G00435' => 'egut', 'Migut.G00436' => 'egut', 'Migut.G00718' => 'egut', 'MSTRG.21891' => 'ama', 'MSTRG.26910' => 'ama', 'MSTRG.4099' => 'ama', 'MSTRG.9925' => 'ama', 'Nitab4.5_0000165g0010' => 'nta', 'Nitab4.5_0000209g0180' => 'nta', 'Nitab4.5_0000244g0440' => 'nta', 'Nitab4.5_0000525g0220' => 'nta', 'Nitab4.5_0001597g0020' => 'nta', 'Nitab4.5_0001878g0040' => 'nta', 'Nitab4.5_0001878g0060' => 'nta', 'Nitab4.5_0002838g0100' => 'nta', 'Nitab4.5_0002838g0120' => 'nta', 'Nitab4.5_0004798g0030' => 'nta', 'Nitab4.5_0005420g0010' => 'nta', 'Nitab4.5_0005507g0010' => 'nta', 'Nitab4.5_0005574g0020' => 'nta', 'Nitab4.5_0005838g0010' => 'nta', 'Nitab4.5_0010580g0020' => 'nta', 'Nn1g02599' => 'nnu', 'Nn1g02608' => 'nnu', 'Nn3g17742' => 'nnu', 'Nn3g19534' => 'nnu', 'Nn3g19535' => 'nnu', 'Oeu008790.1' => 'oeu', 'Oeu008792.1' => 'oeu', 'Oeu032590.1' => 'oeu', 'Oeu035349.1' => 'oeu', 'Oeu049791.1' => 'oeu', 'Os01g0774500' => 'osa', 'Os03g0628800' => 'osa', 'Os03g0798600' => 'osa', 'Os05g0508800' => 'osa', 'Peaxi162Scf00036g02018' => 'pax', 'Peaxi162Scf00578g00032' => 'pax', 'Peaxi162Scf00578g00317' => 'pax', 'Peaxi162Scf00785g00114' => 'pax', 'Peaxi162Scf00813g00119' => 'pax', 'Peaxi162Scf00906g00227' => 'pax', 'PGR004G0875' => 'pgr', 'PGR004G2424' => 'pgr', 'PGR031G1239' => 'pgr', 'PGR031G2474' => 'pgr', 'PGR044G0423' => 'pgr', 'PGSC0003DMG400001128' => 'stu', 'PGSC0003DMG400007336' => 'stu', 'PGSC0003DMG400016318' => 'stu', 'PGSC0003DMG400016319' => 'stu', 'PGSC0003DMG400018074' => 'stu', 'Phvul.001G157700' => 'pvu', 'Phvul.002G148550' => 'pvu', 'Phvul.002G320200' => 'pvu', 'Phvul.003G089200' => 'pvu', 'Phvul.007G126000' => 'pvu', 'Phvul.007G126100' => 'pvu', 'Phvul.007G178000' => 'pvu', 'Phvul.007G178200' => 'pvu', 'Potri.002G043000' => 'ptr', 'Potri.002G043200' => 'ptr', 'Potri.003G123750' => 'ptr', 'Potri.005G055401' => 'ptr', 'Potri.005G219700' => 'ptr', 'Potri.005G220000' => 'ptr', 'Potri.008G161901' => 'ptr', 'Potri.008G162000' => 'ptr', 'Potri.008G162400' => 'ptr', 'Potri.010G076900' => 'ptr', 'Pp3c12_9180' => 'ppa', 'Pp3c13_19770' => 'ppa', 'Pp3c14_22950' => 'ppa', 'Pp3c16_12160' => 'ppa', 'Pp3c27_7820' => 'ppa', 'Pp3c2_3490' => 'ppa', 'Pp3c3_23700' => 'ppa', 'Pp3c3_36520' => 'ppa', 'Pp3c4_15250' => 'ppa', 'PRCOL_00007002' => 'pco', 'Prupe.1G030600' => 'ppe', 'Prupe.1G030700' => 'ppe', 'Prupe.6G345200' => 'ppe', 'Prupe.8G230300' => 'ppe', 'Prupe.8G230500' => 'ppe', 'Psat3g059600' => 'psa', 'Psat5g200920' => 'psa', 'Psat6g056440' => 'psa', 'Psat6g057360' => 'psa', 'Psat6g134120' => 'psa', 'Psat6g134160' => 'psa', 'Psat7g008640' => 'psa', 'Psat7g185240' => 'psa', 'PSO017G1330' => 'pso', 'PSO063G6097' => 'pso', 'PSO170G0835' => 'pso', 'PSO170G2499' => 'pso', 'PSO210G5058' => 'pso', 'PSO210G6154' => 'pso', 'PSO585G0031' => 'pso', 'PSO832G0264' => 'pso', 'PSO832G4288' => 'pso', 'QL03p027355' => 'qlo', 'QL03p027430' => 'qlo', 'QL04p081380' => 'qlo', 'QL06p015642' => 'qlo', 'QL06p015650' => 'qlo', 'QL06p015686' => 'qlo', 'QL12p042927' => 'qlo', 'QL93p1863_0035' => 'qlo', 'RcHm_v2.0_Chr3g0450581' => 'rch', 'RcHm_v2.0_Chr4g0390371' => 'rch', 'RcHm_v2.0_Chr4g0390381' => 'rch', 'RcHm_v2.0_Chr4g0390491' => 'rch', 'RcHm_v2.0_Chr4g0390501' => 'rch', 'RcHm_v2.0_Chr6g0289231' => 'rch', 'Rhsim04G0190400' => 'rsi', 'Rhsim04G0190500' => 'rsi', 'Rhsim04G0190600' => 'rsi', 'Rhsim13G0031400' => 'rsi', 'Rhsim13G0165600' => 'rsi', 'RhsimUnG0114600' => 'rsi', 'RhsimUnG0114700' => 'rsi', 'Sabra02G0034800' => 'sbr', 'Sabra02G0035100' => 'sbr', 'Sabra05G0168600' => 'sbr', 'Sabra05G0168800' => 'sbr', 'Sabra08G0123700' => 'sbr', 'Sabra10G0031900' => 'sbr', 'Sabra13G0039000' => 'sbr', 'SalBow2G0782' => 'sbo', 'SalBow2G1403' => 'sbo', 'SalBow4G0074' => 'sbo', 'SalBow4G2635' => 'sbo', 'SalBow5G3010' => 'sbo', 'Sc05g0000870' => 'sci', 'Sc05g0000890' => 'sci', 'Sc13g0005000' => 'sci', 'Sc13g0005030' => 'sci', 'Sc19g0003790' => 'sci', 'Sc19g0003800' => 'sci', 'Sed0003467' => 'sed', 'Sed0009355' => 'sed', 'Sed0009894' => 'sed', 'Sed0011972' => 'sed', 'Sed0021483' => 'sed', 'Sed0021750' => 'sed', 'Sed0026279' => 'sed', 'SEGI_05312' => 'sgi', 'SEGI_10112' => 'sgi', 'SEGI_15835' => 'sgi', 'SEGI_30386' => 'sgi', 'SEGI_34122' => 'sgi', 'SEGI_35063' => 'sgi', 'SGA_v2.0_scaffold101G29794' => 'sas', 'SGA_v2.0_scaffold1G00573' => 'sas', 'SGA_v2.0_scaffold79G25637' => 'sas', 'SGA_v2.0_scaffold88G27283' => 'sas', 'SGA_v2.0_scaffold88G27285' => 'sas', 'SGA_v2.0_scaffold88G27331' => 'sas', 'SHI09937' => 'shi', 'SMO119G0302' => 'smo', 'SMO137G0231' => 'smo', 'SMO367G1151' => 'smo', 'Solyc02g082000.3' => 'sly', 'Solyc06g031670.3' => 'sly', 'Solyc06g053810.3' => 'sly', 'Solyc07g025457.1' => 'sly', 'Solyc08g059740.1' => 'sly', 'Solyc08g059750.3' => 'sly', 'Solyc09g083370.3' => 'sly', 'Solyc12g038950.3' => 'sly', 'Sopen02g026630' => 'spe', 'Sopen06g018930' => 'spe', 'Sopen06g018940' => 'spe', 'Sopen08g009460' => 'spe', 'Sopen09g032290' => 'spe', 'Sp1g03080' => 'spa', 'Sp1g03090' => 'spa', 'Sp1g05480' => 'spa', 'Sp2g07860' => 'spa', 'Sp2g08430' => 'spa', 'Sp2g08440' => 'spa', 'Sp2g26200' => 'spa', 'Sp4g13170' => 'spa', 'Sp6g33840' => 'spa', 'SpUn1204_0010' => 'spa', 'TAR365G0908' => 'tar', 'TAR381G1270' => 'tar', 'TAR381G1651' => 'tar', 'TAR625G1131' => 'tar', 'TAR633G0962' => 'tar', 'TAR633G1729' => 'tar', 'TAR633G1864' => 'tar', 'TAR636G0221' => 'tar', 'TAR636G0314' => 'tar', 'TAR636G3202' => 'tar', 'THA.LOC104800805' => 'tha', 'THA.LOC104801096' => 'tha', 'THA.LOC104801555' => 'tha', 'THA.LOC104808491' => 'tha', 'THA.LOC104808595' => 'tha', 'THA.LOC104815985' => 'tha', 'THA.LOC104822250' => 'tha', 'THA.LOC104826071' => 'tha', 'Thecc.01G265200' => 'tca', 'Thecc.01G265300' => 'tca', 'Thecc.01G265700' => 'tca', 'Thecc.03G109100' => 'tca', 'Thecc.04G245900' => 'tca', 'Thecc.04G246000' => 'tca', 'Thhalv10003334m.g' => 'esa', 'Thhalv10005508m.g' => 'esa', 'Thhalv10005643m.g' => 'esa', 'Thhalv10007316m.g' => 'esa', 'Thhalv10009006m.g' => 'esa', 'Thhalv10009309m.g' => 'esa', 'Thhalv10014917m.g' => 'esa', 'Thhalv10014919m.g' => 'esa', 'Thhalv10015393m.g' => 'esa', 'Thhalv10016515m.g' => 'esa', 'Thhalv10029242m.g' => 'esa', 'TPR.G16654' => 'tpr', 'TPR.G20589' => 'tpr', 'TPR.G23029' => 'tpr', 'TPR.G27731' => 'tpr', 'TPR.G28889' => 'tpr', 'TPR.G28899' => 'tpr', 'TPR.G30846' => 'tpr', 'TPR.G5452' => 'tpr', 'TPR.G5713' => 'tpr', 'TPR.G9046' => 'tpr', 'TPR.G9061' => 'tpr', 'TWI09G1075' => 'twi', 'TWI12G0806' => 'twi', 'TWI18G0108' => 'twi', 'TWI53G1361' => 'twi', 'TWI73G0185' => 'twi', 'TWI73G0427' => 'twi', 'unitig_37.g12001' => 'ugi', 'unitig_747.g21660' => 'ugi', 'unitig_748.g7232' => 'ugi', 'unitig_748.g7315' => 'ugi', 'unitig_85.g27262' => 'ugi', 'unitig_92.g28220' => 'ugi', 'vmacro02632' => 'vma', 'vmacro08410' => 'vma', 'vmacro08411' => 'vma', 'vmacro15407' => 'vma', 'VMungo0251G3619' => 'vmu', 'VMungo0720G1204' => 'vmu', 'VMungo0720G1918' => 'vmu', 'VMungo0720G2387' => 'vmu', 'VMungo0720G2961' => 'vmu', 'VMungo1215G2154' => 'vmu', 'VMungo1383G2411' => 'vmu', 'Zm00001eb051130' => 'zma', 'Zm00001eb116830' => 'zma', 'Zm00001eb116850' => 'zma', 'Zm00001eb151740' => 'zma', 'Zm00001eb292360' => 'zma', 'Zm00001eb301640' => 'zma' ) $gf_id = 'HOM05D000856' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000856' ) $data_identifier = 'HOM05D000856' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 13, 'ath' => (int) 10, 'atr' => (int) 1, 'acertr' => (int) 8, 'cqu' => (int) 6, 'bca' => (int) 21, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 11, 'car' => (int) 9, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 8, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 5, 'fan' => (int) 16, 'fve' => (int) 6, 'gma' => (int) 11, 'ghi' => (int) 19, 'gra' => (int) 9, 'vvi' => (int) 7, 'han' => (int) 17, 'cav' => (int) 5, 'hma' => (int) 2, 'vpl' => (int) 2, 'sun' => (int) 7, 'lal' => (int) 9, 'lja' => (int) 5, 'lonja' => (int) 9, 'lsa' => (int) 5, 'mes' => (int) 8, 'mpo' => (int) 3, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 10, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 15, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 9, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 9, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 6, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 5, 'spa' => (int) 10, 'tar' => (int) 10, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 11, 'tpr' => (int) 11, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 4, 'vmu' => (int) 7, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb301640' $species_info = array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ) $local_species = 'sgi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000856', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p00010' => 'bna', 'A03p04160' => 'bna', 'A03p17160' => 'bna', 'A04p23370' => 'bna', 'A05p14860' => 'bna', 'A08p37020' => 'bna', 'A09p08050' => 'bna', 'A09p66800' => 'bna', 'A09p67940' => 'bna', 'A10p02680' => 'bna', 'A10p05320' => 'bna', 'Aa31LG1G20560' => 'aar', 'Aa31LG1G20610' => 'aar', 'Aa31LG1G7810' => 'aar', 'Aa31LG5G3590' => 'aar', 'Aa31LG5G6140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3819' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4683' => 'aag', 'Actinidia04480' => 'ach', 'Actinidia05466' => 'ach', 'Actinidia08445' => 'ach', 'Actinidia21170' => 'ach', 'Actinidia24812' => 'ach', 'Actinidia24951' => 'ach', 'Actinidia40088' => 'ach', 'Ah.02g111660' => 'amhyb', 'Ah.11g048900' => 'amhyb', 'Ah.11g049910' => 'amhyb', 'AL1G13870' => 'aly', 'AL1G13880' => 'aly', 'AL1G16760' => 'aly', 'AL390U10020' => 'aly', 'AL4G25520' => 'aly', 'AL6G19890' => 'aly', 'AL6G19900' => 'aly', 'AL6G19910' => 'aly', 'AL8G40100' => 'aly', 'Aqoxy2G03562' => 'aox', 'Aqoxy5G00316' => 'aox', 'Aqoxy5G00926' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1628KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1H403S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2FU6SJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.882I6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8YRY2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YN1SN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AF70II' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZA8L1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F916KL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHRD8H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KTZ8QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S22EMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8M29T' => 'arhy', 'AT1G04270' => 'ath', 'AT1G04280' => 'ath', 'AT1G06750' => 'ath', 'AT1G33850' => 'ath', 'AT2G30630' => 'ath', 'AT5G09490' => 'ath', 'AT5G09500' => 'ath', 'AT5G09510' => 'ath', 'AT5G43640' => 'ath', 'AT5G63070' => 'ath', 'ATR0605G315' => 'atr', 'Atru.chr11.175' => 'acertr', 'Atru.chr11.653' => 'acertr', 'Atru.chr3.1616' => 'acertr', 'Atru.chr4.2230' => 'acertr', 'Atru.chr4.2232' => 'acertr', 'Atru.chr5.1598' => 'acertr', 'Atru.chr5.1600' => 'acertr', 'Atru.chr5.2188' => 'acertr', 'AUR62008326' => 'cqu', 'AUR62011922' => 'cqu', 'AUR62011924' => 'cqu', 'AUR62021771' => 'cqu', 'AUR62032237' => 'cqu', 'AUR62032240' => 'cqu', 'BcaB01g05572' => 'bca', 'BcaB02g10337' => 'bca', 'BcaB04g19944' => 'bca', 'BcaB05g21548' => 'bca', 'BcaB05g21549' => 'bca', 'BcaB05g23227' => 'bca', 'BcaB06g26256' => 'bca', 'BcaB06g26257' => 'bca', 'BcaB06g28379' => 'bca', 'BcaC02g11159' => 'bca', 'BcaC03g13258' => 'bca', 'BcaC03g13259' => 'bca', 'BcaC05g24456' => 'bca', 'BcaC05g24457' => 'bca', 'BcaC07g36922' => 'bca', 'BcaC07g36923' => 'bca', 'BcaC07g42050' => 'bca', 'BcaC07g42176' => 'bca', 'BcaC07g42195' => 'bca', 'BcaC07g42196' => 'bca', 'BcaNung06674' => 'bca', 'BolC2t06351H' => 'bol', 'BolC2t06352H' => 'bol', 'BolC3t12993H' => 'bol', 'BolC4t23525H' => 'bol', 'BolC4t27475H' => 'bol', 'BolC5t29025H' => 'bol', 'BolC5t29026H' => 'bol', 'BolC8t46898H' => 'bol', 'BolC8t46899H' => 'bol', 'BolC8t52630H' => 'bol', 'BolC8t52765H' => 'bol', 'BolC9t53824H' => 'bol', 'BraA03t09760Z' => 'bra', 'BraA03t10990Z' => 'bra', 'BraA05t20413Z' => 'bra', 'BraA08t35602Z' => 'bra', 'BraA09t36458Z' => 'bra', 'BraA09t42018Z' => 'bra', 'BraA09t42129Z' => 'bra', 'BraA10t42536Z' => 'bra', 'BraA10t42537Z' => 'bra', 'C01p10690' => 'bna', 'C02p03890' => 'bna', 'C02p03900' => 'bna', 'C03p04620' => 'bna', 'C04p19870' => 'bna', 'C04p59670' => 'bna', 'C05p02460' => 'bna', 'C05p02470' => 'bna', 'C08p00980' => 'bna', 'C08p00990' => 'bna', 'C08p51030' => 'bna', 'C08p52360' => 'bna', 'C09p09120' => 'bna', 'CAN.G19.15' => 'can', 'CAN.G251.10' => 'can', 'CAN.G251.9' => 'can', 'CAN.G398.24' => 'can', 'CAN.G410.32' => 'can', 'CAN.G881.2' => 'can', 'CANSAT01G3025' => 'cansat', 'CANSAT78G1211' => 'cansat', 'CANSAT78G1218' => 'cansat', 'CANSAT78G1521' => 'cansat', 'CANSAT78G1670' => 'cansat', 'CARHR003600' => 'chi', 'CARHR003610' => 'chi', 'CARHR006290' => 'chi', 'CARHR006430' => 'chi', 'CARHR124110' => 'chi', 'CARHR203870' => 'chi', 'CARHR203880' => 'chi', 'CARHR203890' => 'chi', 'CARHR276880' => 'chi', 'Carub.0001s0346' => 'cru', 'Carub.0001s0347' => 'cru', 'Carub.0001s0607' => 'cru', 'Carub.0003s2768' => 'cru', 'Carub.0003s2769' => 'cru', 'Carub.0004s1178' => 'cru', 'Carub.0006s0806' => 'cru', 'Carub.0006s0807' => 'cru', 'Carub.0006s0808' => 'cru', 'Carub.0008s0501' => 'cru', 'Carub.0008s2379' => 'cru', 'Ca_08655_v3' => 'car', 'Ca_08922_v3' => 'car', 'Ca_08923_v3' => 'car', 'Ca_09119_v3' => 'car', 'Ca_09703_v3' => 'car', 'Ca_09705_v3' => 'car', 'Ca_09835_v3' => 'car', 'Ca_26403_v3' => 'car', 'Ca_30719_v3' => 'car', 'CBR_g17958' => 'cbr', 'CBR_g40516' => 'cbr', 'Cc00_g05350' => 'ccan', 'Cc01_g18690' => 'ccan', 'Cc03_g04830' => 'ccan', 'Cc03_g04850' => 'ccan', 'CDE02G4469' => 'cde', 'CDE06G0883' => 'cde', 'CDE06G1295' => 'cde', 'CDE06G1390' => 'cde', 'CDE07G0584' => 'cde', 'CDE07G1084' => 'cde', 'CDE08G1259' => 'cde', 'Cfa002341' => 'cfa', 'Cfa024337' => 'cfa', 'Ciclev10004749m.g' => 'ccl', 'Ciclev10006127m.g' => 'ccl', 'Ciclev10019720m.g' => 'ccl', 'Ciclev10022652m.g' => 'ccl', 'CiPaw.01G190400' => 'cil', 'CiPaw.01G190500' => 'cil', 'CiPaw.02G116400' => 'cil', 'CiPaw.02G116500' => 'cil', 'CiPaw.04G183000' => 'cil', 'CiPaw.04G183300' => 'cil', 'ClCG05G004610' => 'cla', 'ClCG05G004620' => 'cla', 'ClCG06G006730' => 'cla', 'ClCG06G006740' => 'cla', 'ClCG11G003690' => 'cla', 'COL.COLO4_08276' => 'col', 'COL.COLO4_08277' => 'col', 'COL.COLO4_15787' => 'col', 'COL.COLO4_15789' => 'col', 'Cpa.g.c44815' => 'cpa', 'Cpa.g.sc52.144' => 'cpa', 'Cpa.g.sc58.46' => 'cpa', 'Cpa.g.sc58.47' => 'cpa', 'Cre08.g360900' => 'cre', 'CsaV3_2G013030' => 'csa', 'CsaV3_2G013050' => 'csa', 'CsaV3_2G015620' => 'csa', 'CsaV3_3G012590' => 'csa', 'CsaV3_3G012600' => 'csa', 'CSS0001641' => 'camsi', 'CSS0008310' => 'camsi', 'CSS0013011' => 'camsi', 'CSS0017147' => 'camsi', 'CSS0022970' => 'camsi', 'CSS0025655' => 'camsi', 'CSS0028665' => 'camsi', 'CSS0029117' => 'camsi', 'CSS0032024' => 'camsi', 'CSS0039681' => 'camsi', 'CSS0046516' => 'camsi', 'CSS0050307' => 'camsi', 'DCAR_005871' => 'dca', 'DCAR_007342' => 'dca', 'DCAR_024228' => 'dca', 'DCAR_027277' => 'dca', 'DCAR_030718' => 'dca', 'Dinv20287' => 'din', 'Dinv22461' => 'din', 'Dinv22464' => 'din', 'Dinv29912' => 'din', 'Dinv29913' => 'din', 'Dinv34580' => 'din', 'Dinv34582' => 'din', 'Dinv44632' => 'din', 'Duzib052G0266' => 'dzi', 'Duzib133G0907' => 'dzi', 'Duzib133G1034' => 'dzi', 'Duzib138G0207' => 'dzi', 'Duzib138G0491' => 'dzi', 'Duzib151G0812' => 'dzi', 'Duzib151G1166' => 'dzi', 'Duzib168G0192' => 'dzi', 'Duzib211G0077' => 'dzi', 'Duzib212G0429' => 'dzi', 'Duzib212G0472' => 'dzi', 'ECA233G2617' => 'eca', 'ECA236G4188' => 'eca', 'ECA240G0936' => 'eca', 'ECA240G1129' => 'eca', 'ECA247G0623' => 'eca', 'EL10Ac5g10451' => 'bvu', 'EL10Ac5g10453' => 'bvu', 'EL10Ac5g10894' => 'bvu', 'Eucgr.H00192' => 'egr', 'Eucgr.H00193' => 'egr', 'Eucgr.H00194' => 'egr', 'Eucgr.J01562' => 'egr', 'Eucgr.K03301' => 'egr', 'FAN02G0632' => 'fan', 'FAN05G5378' => 'fan', 'FAN09G3247' => 'fan', 'FAN12G0435' => 'fan', 'FAN12G2426' => 'fan', 'FAN14G1707' => 'fan', 'FAN14G4725' => 'fan', 'FAN15G2071' => 'fan', 'FAN17G3065' => 'fan', 'FAN19G1376' => 'fan', 'FAN20G0354' => 'fan', 'FAN20G2429' => 'fan', 'FAN20G2658' => 'fan', 'FAN24G2343' => 'fan', 'FAN27G2362' => 'fan', 'FAN28G1765' => 'fan', 'FvH4_1g16020' => 'fve', 'FvH4_2g04890' => 'fve', 'FvH4_2g22270' => 'fve', 'FvH4_4g02630' => 'fve', 'FvH4_4g02640' => 'fve', 'FvH4_6g02650' => 'fve', 'Glyma.02G140600' => 'gma', 'Glyma.03G159900' => 'gma', 'Glyma.05G234800' => 'gma', 'Glyma.07G269600' => 'gma', 'Glyma.08G042300' => 'gma', 'Glyma.10G033500' => 'gma', 'Glyma.10G185200' => 'gma', 'Glyma.17G004300' => 'gma', 'Glyma.19G161900' => 'gma', 'Glyma.20G205100' => 'gma', 'Glyma.20G205200' => 'gma', 'Gohir.A01G139101' => 'ghi', 'Gohir.A02G035600' => 'ghi', 'Gohir.A02G117901' => 'ghi', 'Gohir.A07G210100' => 'ghi', 'Gohir.A07G210200' => 'ghi', 'Gohir.A08G061100' => 'ghi', 'Gohir.A09G223000' => 'ghi', 'Gohir.A09G223100' => 'ghi', 'Gohir.A10G113900' => 'ghi', 'Gohir.A10G114000' => 'ghi', 'Gohir.D02G042300' => 'ghi', 'Gohir.D07G216100' => 'ghi', 'Gohir.D07G216200' => 'ghi', 'Gohir.D08G070400' => 'ghi', 'Gohir.D09G225000' => 'ghi', 'Gohir.D09G225100' => 'ghi', 'Gohir.D10G152300' => 'ghi', 'Gohir.D10G153200' => 'ghi', 'Gohir.D11G133701' => 'ghi', 'Gorai.004G074100' => 'gra', 'Gorai.005G046800' => 'gra', 'Gorai.006G246500' => 'gra', 'Gorai.006G246600' => 'gra', 'Gorai.007G142900' => 'gra', 'Gorai.011G171000' => 'gra', 'Gorai.011G171100' => 'gra', 'Gorai.013G104300' => 'gra', 'Gorai.013G104400' => 'gra', 'GSVIVG01000754001' => 'vvi', 'GSVIVG01000756001' => 'vvi', 'GSVIVG01010903001' => 'vvi', 'GSVIVG01017623001' => 'vvi', 'GSVIVG01018113001' => 'vvi', 'GSVIVG01018116001' => 'vvi', 'GSVIVG01018118001' => 'vvi', 'HanXRQChr03g0076211' => 'han', 'HanXRQChr03g0092431' => 'han', 'HanXRQChr03g0092441' => 'han', 'HanXRQChr03g0092591' => 'han', 'HanXRQChr03g0092671' => 'han', 'HanXRQChr03g0092681' => 'han', 'HanXRQChr03g0092691' => 'han', 'HanXRQChr03g0092701' => 'han', 'HanXRQChr03g0092721' => 'han', 'HanXRQChr03g0092731' => 'han', 'HanXRQChr04g0113681' => 'han', 'HanXRQChr10g0281371' => 'han', 'HanXRQChr11g0337141' => 'han', 'HanXRQChr13g0424521' => 'han', 'HanXRQChr13g0424531' => 'han', 'HanXRQChr13g0424541' => 'han', 'HanXRQChr16g0498221' => 'han', 'Haze_04377' => 'cav', 'Haze_11298' => 'cav', 'Haze_24547' => 'cav', 'Haze_24550' => 'cav', 'Haze_26587' => 'cav', 'Hma1.2p1_0650F.1_g195410' => 'hma', 'Hma1.2p1_0893F.1_g233470' => 'hma', 'HPP92_006508' => 'vpl', 'HPP92_024780' => 'vpl', 'Hund02688' => 'sun', 'Hund09380' => 'sun', 'Hund09381' => 'sun', 'Hund09832' => 'sun', 'Hund09833' => 'sun', 'Hund11351' => 'sun', 'Hund11513' => 'sun', 'Lalb_Chr06g0162591' => 'lal', 'Lalb_Chr06g0162601' => 'lal', 'Lalb_Chr06g0169321' => 'lal', 'Lalb_Chr09g0330951' => 'lal', 'Lalb_Chr16g0387631' => 'lal', 'Lalb_Chr21g0306241' => 'lal', 'Lalb_Chr25g0290051' => 'lal', 'Lalb_Chr25g0290061' => 'lal', 'Lalb_Chr25g0290071' => 'lal', 'Lj1g0003876' => 'lja', 'Lj1P1207T36' => 'lonja', 'Lj2C1156G12' => 'lonja', 'Lj3A793G39' => 'lonja', 'Lj3C580G2' => 'lonja', 'Lj3C780G2' => 'lonja', 'Lj3C780T4' => 'lonja', 'Lj3C793G9' => 'lonja', 'Lj4g0012960' => 'lja', 'Lj5g0021252' => 'lja', 'Lj5g0021484' => 'lja', 'Lj5g0024528' => 'lja', 'Lj6A399T12' => 'lonja', 'Lj6A656G65' => 'lonja', 'Lsat_1_v5_gn_3_125500' => 'lsa', 'Lsat_1_v5_gn_3_125540' => 'lsa', 'Lsat_1_v5_gn_5_72701' => 'lsa', 'Lsat_1_v5_gn_8_91560' => 'lsa', 'Lsat_1_v5_gn_9_9640' => 'lsa', 'Manes.01G200600' => 'mes', 'Manes.01G200700' => 'mes', 'Manes.03G168900' => 'mes', 'Manes.03G169000' => 'mes', 'Manes.05G085801' => 'mes', 'Manes.05G086200' => 'mes', 'Manes.15G036700' => 'mes', 'Manes.15G036900' => 'mes', 'Mapoly0004s0172' => 'mpo', 'Mapoly0023s0001' => 'mpo', 'Mapoly0142s0012' => 'mpo', 'MBI01_g32854_MAGBIO' => 'mbi', 'MBI11_g24427_MAGBIO' => 'mbi', 'MBI11_g47319_MAGBIO' => 'mbi', 'MCO01G433' => 'mco', 'MD00G1187800' => 'mdo', 'MD04G1226500' => 'mdo', 'MD05G1203900' => 'mdo', 'MD10G1191100' => 'mdo', 'MD12G1243500' => 'mdo', 'MD13G1207000' => 'mdo', 'MD13G1207100' => 'mdo', 'MD16G1208600' => 'mdo', 'Medtr1g050352' => 'mtr', 'Medtr1g070385' => 'mtr', 'Medtr1g070450' => 'mtr', 'Medtr1g075200' => 'mtr', 'Medtr1g075250' => 'mtr', 'Medtr1g075260' => 'mtr', 'Medtr1g475250' => 'mtr', 'Medtr4g075450' => 'mtr', 'Medtr7g096300' => 'mtr', 'Medtr8g105110' => 'mtr', 'MELO3C006470.2' => 'cme', 'MELO3C006471.2' => 'cme', 'MELO3C020772.2' => 'cme', 'MELO3C026780.2' => 'cme', 'MELO3C026781.2' => 'cme', 'Migut.D00390' => 'egut', 'Migut.G00435' => 'egut', 'Migut.G00436' => 'egut', 'Migut.G00718' => 'egut', 'MSTRG.21891' => 'ama', 'MSTRG.26910' => 'ama', 'MSTRG.4099' => 'ama', 'MSTRG.9925' => 'ama', 'Nitab4.5_0000165g0010' => 'nta', 'Nitab4.5_0000209g0180' => 'nta', 'Nitab4.5_0000244g0440' => 'nta', 'Nitab4.5_0000525g0220' => 'nta', 'Nitab4.5_0001597g0020' => 'nta', 'Nitab4.5_0001878g0040' => 'nta', 'Nitab4.5_0001878g0060' => 'nta', 'Nitab4.5_0002838g0100' => 'nta', 'Nitab4.5_0002838g0120' => 'nta', 'Nitab4.5_0004798g0030' => 'nta', 'Nitab4.5_0005420g0010' => 'nta', 'Nitab4.5_0005507g0010' => 'nta', 'Nitab4.5_0005574g0020' => 'nta', 'Nitab4.5_0005838g0010' => 'nta', 'Nitab4.5_0010580g0020' => 'nta', 'Nn1g02599' => 'nnu', 'Nn1g02608' => 'nnu', 'Nn3g17742' => 'nnu', 'Nn3g19534' => 'nnu', 'Nn3g19535' => 'nnu', 'Oeu008790.1' => 'oeu', 'Oeu008792.1' => 'oeu', 'Oeu032590.1' => 'oeu', 'Oeu035349.1' => 'oeu', 'Oeu049791.1' => 'oeu', 'Os01g0774500' => 'osa', 'Os03g0628800' => 'osa', 'Os03g0798600' => 'osa', 'Os05g0508800' => 'osa', 'Peaxi162Scf00036g02018' => 'pax', 'Peaxi162Scf00578g00032' => 'pax', 'Peaxi162Scf00578g00317' => 'pax', 'Peaxi162Scf00785g00114' => 'pax', 'Peaxi162Scf00813g00119' => 'pax', 'Peaxi162Scf00906g00227' => 'pax', 'PGR004G0875' => 'pgr', 'PGR004G2424' => 'pgr', 'PGR031G1239' => 'pgr', 'PGR031G2474' => 'pgr', 'PGR044G0423' => 'pgr', 'PGSC0003DMG400001128' => 'stu', 'PGSC0003DMG400007336' => 'stu', 'PGSC0003DMG400016318' => 'stu', 'PGSC0003DMG400016319' => 'stu', 'PGSC0003DMG400018074' => 'stu', 'Phvul.001G157700' => 'pvu', 'Phvul.002G148550' => 'pvu', 'Phvul.002G320200' => 'pvu', 'Phvul.003G089200' => 'pvu', 'Phvul.007G126000' => 'pvu', 'Phvul.007G126100' => 'pvu', 'Phvul.007G178000' => 'pvu', 'Phvul.007G178200' => 'pvu', 'Potri.002G043000' => 'ptr', 'Potri.002G043200' => 'ptr', 'Potri.003G123750' => 'ptr', 'Potri.005G055401' => 'ptr', 'Potri.005G219700' => 'ptr', 'Potri.005G220000' => 'ptr', 'Potri.008G161901' => 'ptr', 'Potri.008G162000' => 'ptr', 'Potri.008G162400' => 'ptr', 'Potri.010G076900' => 'ptr', 'Pp3c12_9180' => 'ppa', 'Pp3c13_19770' => 'ppa', 'Pp3c14_22950' => 'ppa', 'Pp3c16_12160' => 'ppa', 'Pp3c27_7820' => 'ppa', 'Pp3c2_3490' => 'ppa', 'Pp3c3_23700' => 'ppa', 'Pp3c3_36520' => 'ppa', 'Pp3c4_15250' => 'ppa', 'PRCOL_00007002' => 'pco', 'Prupe.1G030600' => 'ppe', 'Prupe.1G030700' => 'ppe', 'Prupe.6G345200' => 'ppe', 'Prupe.8G230300' => 'ppe', 'Prupe.8G230500' => 'ppe', 'Psat3g059600' => 'psa', 'Psat5g200920' => 'psa', 'Psat6g056440' => 'psa', 'Psat6g057360' => 'psa', 'Psat6g134120' => 'psa', 'Psat6g134160' => 'psa', 'Psat7g008640' => 'psa', 'Psat7g185240' => 'psa', 'PSO017G1330' => 'pso', 'PSO063G6097' => 'pso', 'PSO170G0835' => 'pso', 'PSO170G2499' => 'pso', 'PSO210G5058' => 'pso', 'PSO210G6154' => 'pso', 'PSO585G0031' => 'pso', 'PSO832G0264' => 'pso', 'PSO832G4288' => 'pso', 'QL03p027355' => 'qlo', 'QL03p027430' => 'qlo', 'QL04p081380' => 'qlo', 'QL06p015642' => 'qlo', 'QL06p015650' => 'qlo', 'QL06p015686' => 'qlo', 'QL12p042927' => 'qlo', 'QL93p1863_0035' => 'qlo', 'RcHm_v2.0_Chr3g0450581' => 'rch', 'RcHm_v2.0_Chr4g0390371' => 'rch', 'RcHm_v2.0_Chr4g0390381' => 'rch', 'RcHm_v2.0_Chr4g0390491' => 'rch', 'RcHm_v2.0_Chr4g0390501' => 'rch', 'RcHm_v2.0_Chr6g0289231' => 'rch', 'Rhsim04G0190400' => 'rsi', 'Rhsim04G0190500' => 'rsi', 'Rhsim04G0190600' => 'rsi', 'Rhsim13G0031400' => 'rsi', 'Rhsim13G0165600' => 'rsi', 'RhsimUnG0114600' => 'rsi', 'RhsimUnG0114700' => 'rsi', 'Sabra02G0034800' => 'sbr', 'Sabra02G0035100' => 'sbr', 'Sabra05G0168600' => 'sbr', 'Sabra05G0168800' => 'sbr', 'Sabra08G0123700' => 'sbr', 'Sabra10G0031900' => 'sbr', 'Sabra13G0039000' => 'sbr', 'SalBow2G0782' => 'sbo', 'SalBow2G1403' => 'sbo', 'SalBow4G0074' => 'sbo', 'SalBow4G2635' => 'sbo', 'SalBow5G3010' => 'sbo', 'Sc05g0000870' => 'sci', 'Sc05g0000890' => 'sci', 'Sc13g0005000' => 'sci', 'Sc13g0005030' => 'sci', 'Sc19g0003790' => 'sci', 'Sc19g0003800' => 'sci', 'Sed0003467' => 'sed', 'Sed0009355' => 'sed', 'Sed0009894' => 'sed', 'Sed0011972' => 'sed', 'Sed0021483' => 'sed', 'Sed0021750' => 'sed', 'Sed0026279' => 'sed', 'SEGI_05312' => 'sgi', 'SEGI_10112' => 'sgi', 'SEGI_15835' => 'sgi', 'SEGI_30386' => 'sgi', 'SEGI_34122' => 'sgi', 'SEGI_35063' => 'sgi', 'SGA_v2.0_scaffold101G29794' => 'sas', 'SGA_v2.0_scaffold1G00573' => 'sas', 'SGA_v2.0_scaffold79G25637' => 'sas', 'SGA_v2.0_scaffold88G27283' => 'sas', 'SGA_v2.0_scaffold88G27285' => 'sas', 'SGA_v2.0_scaffold88G27331' => 'sas', 'SHI09937' => 'shi', 'SMO119G0302' => 'smo', 'SMO137G0231' => 'smo', 'SMO367G1151' => 'smo', 'Solyc02g082000.3' => 'sly', 'Solyc06g031670.3' => 'sly', 'Solyc06g053810.3' => 'sly', 'Solyc07g025457.1' => 'sly', 'Solyc08g059740.1' => 'sly', 'Solyc08g059750.3' => 'sly', 'Solyc09g083370.3' => 'sly', 'Solyc12g038950.3' => 'sly', 'Sopen02g026630' => 'spe', 'Sopen06g018930' => 'spe', 'Sopen06g018940' => 'spe', 'Sopen08g009460' => 'spe', 'Sopen09g032290' => 'spe', 'Sp1g03080' => 'spa', 'Sp1g03090' => 'spa', 'Sp1g05480' => 'spa', 'Sp2g07860' => 'spa', 'Sp2g08430' => 'spa', 'Sp2g08440' => 'spa', 'Sp2g26200' => 'spa', 'Sp4g13170' => 'spa', 'Sp6g33840' => 'spa', 'SpUn1204_0010' => 'spa', 'TAR365G0908' => 'tar', 'TAR381G1270' => 'tar', 'TAR381G1651' => 'tar', 'TAR625G1131' => 'tar', 'TAR633G0962' => 'tar', 'TAR633G1729' => 'tar', 'TAR633G1864' => 'tar', 'TAR636G0221' => 'tar', 'TAR636G0314' => 'tar', 'TAR636G3202' => 'tar', 'THA.LOC104800805' => 'tha', 'THA.LOC104801096' => 'tha', 'THA.LOC104801555' => 'tha', 'THA.LOC104808491' => 'tha', 'THA.LOC104808595' => 'tha', 'THA.LOC104815985' => 'tha', 'THA.LOC104822250' => 'tha', 'THA.LOC104826071' => 'tha', 'Thecc.01G265200' => 'tca', 'Thecc.01G265300' => 'tca', 'Thecc.01G265700' => 'tca', 'Thecc.03G109100' => 'tca', 'Thecc.04G245900' => 'tca', 'Thecc.04G246000' => 'tca', 'Thhalv10003334m.g' => 'esa', 'Thhalv10005508m.g' => 'esa', 'Thhalv10005643m.g' => 'esa', 'Thhalv10007316m.g' => 'esa', 'Thhalv10009006m.g' => 'esa', 'Thhalv10009309m.g' => 'esa', 'Thhalv10014917m.g' => 'esa', 'Thhalv10014919m.g' => 'esa', 'Thhalv10015393m.g' => 'esa', 'Thhalv10016515m.g' => 'esa', 'Thhalv10029242m.g' => 'esa', 'TPR.G16654' => 'tpr', 'TPR.G20589' => 'tpr', 'TPR.G23029' => 'tpr', 'TPR.G27731' => 'tpr', 'TPR.G28889' => 'tpr', 'TPR.G28899' => 'tpr', 'TPR.G30846' => 'tpr', 'TPR.G5452' => 'tpr', 'TPR.G5713' => 'tpr', 'TPR.G9046' => 'tpr', 'TPR.G9061' => 'tpr', 'TWI09G1075' => 'twi', 'TWI12G0806' => 'twi', 'TWI18G0108' => 'twi', 'TWI53G1361' => 'twi', 'TWI73G0185' => 'twi', 'TWI73G0427' => 'twi', 'unitig_37.g12001' => 'ugi', 'unitig_747.g21660' => 'ugi', 'unitig_748.g7232' => 'ugi', 'unitig_748.g7315' => 'ugi', 'unitig_85.g27262' => 'ugi', 'unitig_92.g28220' => 'ugi', 'vmacro02632' => 'vma', 'vmacro08410' => 'vma', 'vmacro08411' => 'vma', 'vmacro15407' => 'vma', 'VMungo0251G3619' => 'vmu', 'VMungo0720G1204' => 'vmu', 'VMungo0720G1918' => 'vmu', 'VMungo0720G2387' => 'vmu', 'VMungo0720G2961' => 'vmu', 'VMungo1215G2154' => 'vmu', 'VMungo1383G2411' => 'vmu', 'Zm00001eb051130' => 'zma', 'Zm00001eb116830' => 'zma', 'Zm00001eb116850' => 'zma', 'Zm00001eb151740' => 'zma', 'Zm00001eb292360' => 'zma', 'Zm00001eb301640' => 'zma' ), 'gf_id' => 'HOM05D000856', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000856' ), 'data_identifier' => 'HOM05D000856', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000856', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p00010' => 'bna', 'A03p04160' => 'bna', 'A03p17160' => 'bna', 'A04p23370' => 'bna', 'A05p14860' => 'bna', 'A08p37020' => 'bna', 'A09p08050' => 'bna', 'A09p66800' => 'bna', 'A09p67940' => 'bna', 'A10p02680' => 'bna', 'A10p05320' => 'bna', 'Aa31LG1G20560' => 'aar', 'Aa31LG1G20610' => 'aar', 'Aa31LG1G7810' => 'aar', 'Aa31LG5G3590' => 'aar', 'Aa31LG5G6140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3819' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4683' => 'aag', 'Actinidia04480' => 'ach', 'Actinidia05466' => 'ach', 'Actinidia08445' => 'ach', 'Actinidia21170' => 'ach', 'Actinidia24812' => 'ach', 'Actinidia24951' => 'ach', 'Actinidia40088' => 'ach', 'Ah.02g111660' => 'amhyb', 'Ah.11g048900' => 'amhyb', 'Ah.11g049910' => 'amhyb', 'AL1G13870' => 'aly', 'AL1G13880' => 'aly', 'AL1G16760' => 'aly', 'AL390U10020' => 'aly', 'AL4G25520' => 'aly', 'AL6G19890' => 'aly', 'AL6G19900' => 'aly', 'AL6G19910' => 'aly', 'AL8G40100' => 'aly', 'Aqoxy2G03562' => 'aox', 'Aqoxy5G00316' => 'aox', 'Aqoxy5G00926' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1628KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1H403S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2FU6SJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.882I6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8YRY2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YN1SN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AF70II' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZA8L1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F916KL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHRD8H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KTZ8QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S22EMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8M29T' => 'arhy', 'AT1G04270' => 'ath', 'AT1G04280' => 'ath', 'AT1G06750' => 'ath', 'AT1G33850' => 'ath', 'AT2G30630' => 'ath', 'AT5G09490' => 'ath', 'AT5G09500' => 'ath', 'AT5G09510' => 'ath', 'AT5G43640' => 'ath', 'AT5G63070' => 'ath', 'ATR0605G315' => 'atr', 'Atru.chr11.175' => 'acertr', 'Atru.chr11.653' => 'acertr', 'Atru.chr3.1616' => 'acertr', 'Atru.chr4.2230' => 'acertr', 'Atru.chr4.2232' => 'acertr', 'Atru.chr5.1598' => 'acertr', 'Atru.chr5.1600' => 'acertr', 'Atru.chr5.2188' => 'acertr', 'AUR62008326' => 'cqu', 'AUR62011922' => 'cqu', 'AUR62011924' => 'cqu', 'AUR62021771' => 'cqu', 'AUR62032237' => 'cqu', 'AUR62032240' => 'cqu', 'BcaB01g05572' => 'bca', 'BcaB02g10337' => 'bca', 'BcaB04g19944' => 'bca', 'BcaB05g21548' => 'bca', 'BcaB05g21549' => 'bca', 'BcaB05g23227' => 'bca', 'BcaB06g26256' => 'bca', 'BcaB06g26257' => 'bca', 'BcaB06g28379' => 'bca', 'BcaC02g11159' => 'bca', 'BcaC03g13258' => 'bca', 'BcaC03g13259' => 'bca', 'BcaC05g24456' => 'bca', 'BcaC05g24457' => 'bca', 'BcaC07g36922' => 'bca', 'BcaC07g36923' => 'bca', 'BcaC07g42050' => 'bca', 'BcaC07g42176' => 'bca', 'BcaC07g42195' => 'bca', 'BcaC07g42196' => 'bca', 'BcaNung06674' => 'bca', 'BolC2t06351H' => 'bol', 'BolC2t06352H' => 'bol', 'BolC3t12993H' => 'bol', 'BolC4t23525H' => 'bol', 'BolC4t27475H' => 'bol', 'BolC5t29025H' => 'bol', 'BolC5t29026H' => 'bol', 'BolC8t46898H' => 'bol', 'BolC8t46899H' => 'bol', 'BolC8t52630H' => 'bol', 'BolC8t52765H' => 'bol', 'BolC9t53824H' => 'bol', 'BraA03t09760Z' => 'bra', 'BraA03t10990Z' => 'bra', 'BraA05t20413Z' => 'bra', 'BraA08t35602Z' => 'bra', 'BraA09t36458Z' => 'bra', 'BraA09t42018Z' => 'bra', 'BraA09t42129Z' => 'bra', 'BraA10t42536Z' => 'bra', 'BraA10t42537Z' => 'bra', 'C01p10690' => 'bna', 'C02p03890' => 'bna', 'C02p03900' => 'bna', 'C03p04620' => 'bna', 'C04p19870' => 'bna', 'C04p59670' => 'bna', 'C05p02460' => 'bna', 'C05p02470' => 'bna', 'C08p00980' => 'bna', 'C08p00990' => 'bna', 'C08p51030' => 'bna', 'C08p52360' => 'bna', 'C09p09120' => 'bna', 'CAN.G19.15' => 'can', 'CAN.G251.10' => 'can', 'CAN.G251.9' => 'can', 'CAN.G398.24' => 'can', 'CAN.G410.32' => 'can', 'CAN.G881.2' => 'can', 'CANSAT01G3025' => 'cansat', 'CANSAT78G1211' => 'cansat', 'CANSAT78G1218' => 'cansat', 'CANSAT78G1521' => 'cansat', 'CANSAT78G1670' => 'cansat', 'CARHR003600' => 'chi', 'CARHR003610' => 'chi', 'CARHR006290' => 'chi', 'CARHR006430' => 'chi', 'CARHR124110' => 'chi', 'CARHR203870' => 'chi', 'CARHR203880' => 'chi', 'CARHR203890' => 'chi', 'CARHR276880' => 'chi', 'Carub.0001s0346' => 'cru', 'Carub.0001s0347' => 'cru', 'Carub.0001s0607' => 'cru', 'Carub.0003s2768' => 'cru', 'Carub.0003s2769' => 'cru', 'Carub.0004s1178' => 'cru', 'Carub.0006s0806' => 'cru', 'Carub.0006s0807' => 'cru', 'Carub.0006s0808' => 'cru', 'Carub.0008s0501' => 'cru', 'Carub.0008s2379' => 'cru', 'Ca_08655_v3' => 'car', 'Ca_08922_v3' => 'car', 'Ca_08923_v3' => 'car', 'Ca_09119_v3' => 'car', 'Ca_09703_v3' => 'car', 'Ca_09705_v3' => 'car', 'Ca_09835_v3' => 'car', 'Ca_26403_v3' => 'car', 'Ca_30719_v3' => 'car', 'CBR_g17958' => 'cbr', 'CBR_g40516' => 'cbr', 'Cc00_g05350' => 'ccan', 'Cc01_g18690' => 'ccan', 'Cc03_g04830' => 'ccan', 'Cc03_g04850' => 'ccan', 'CDE02G4469' => 'cde', 'CDE06G0883' => 'cde', 'CDE06G1295' => 'cde', 'CDE06G1390' => 'cde', 'CDE07G0584' => 'cde', 'CDE07G1084' => 'cde', 'CDE08G1259' => 'cde', 'Cfa002341' => 'cfa', 'Cfa024337' => 'cfa', 'Ciclev10004749m.g' => 'ccl', 'Ciclev10006127m.g' => 'ccl', 'Ciclev10019720m.g' => 'ccl', 'Ciclev10022652m.g' => 'ccl', 'CiPaw.01G190400' => 'cil', 'CiPaw.01G190500' => 'cil', 'CiPaw.02G116400' => 'cil', 'CiPaw.02G116500' => 'cil', 'CiPaw.04G183000' => 'cil', 'CiPaw.04G183300' => 'cil', 'ClCG05G004610' => 'cla', 'ClCG05G004620' => 'cla', 'ClCG06G006730' => 'cla', 'ClCG06G006740' => 'cla', 'ClCG11G003690' => 'cla', 'COL.COLO4_08276' => 'col', 'COL.COLO4_08277' => 'col', 'COL.COLO4_15787' => 'col', 'COL.COLO4_15789' => 'col', 'Cpa.g.c44815' => 'cpa', 'Cpa.g.sc52.144' => 'cpa', 'Cpa.g.sc58.46' => 'cpa', 'Cpa.g.sc58.47' => 'cpa', 'Cre08.g360900' => 'cre', 'CsaV3_2G013030' => 'csa', 'CsaV3_2G013050' => 'csa', 'CsaV3_2G015620' => 'csa', 'CsaV3_3G012590' => 'csa', 'CsaV3_3G012600' => 'csa', 'CSS0001641' => 'camsi', 'CSS0008310' => 'camsi', 'CSS0013011' => 'camsi', 'CSS0017147' => 'camsi', 'CSS0022970' => 'camsi', 'CSS0025655' => 'camsi', 'CSS0028665' => 'camsi', 'CSS0029117' => 'camsi', 'CSS0032024' => 'camsi', 'CSS0039681' => 'camsi', 'CSS0046516' => 'camsi', 'CSS0050307' => 'camsi', 'DCAR_005871' => 'dca', 'DCAR_007342' => 'dca', 'DCAR_024228' => 'dca', 'DCAR_027277' => 'dca', 'DCAR_030718' => 'dca', 'Dinv20287' => 'din', 'Dinv22461' => 'din', 'Dinv22464' => 'din', 'Dinv29912' => 'din', 'Dinv29913' => 'din', 'Dinv34580' => 'din', 'Dinv34582' => 'din', 'Dinv44632' => 'din', 'Duzib052G0266' => 'dzi', 'Duzib133G0907' => 'dzi', 'Duzib133G1034' => 'dzi', 'Duzib138G0207' => 'dzi', 'Duzib138G0491' => 'dzi', 'Duzib151G0812' => 'dzi', 'Duzib151G1166' => 'dzi', 'Duzib168G0192' => 'dzi', 'Duzib211G0077' => 'dzi', 'Duzib212G0429' => 'dzi', 'Duzib212G0472' => 'dzi', 'ECA233G2617' => 'eca', 'ECA236G4188' => 'eca', 'ECA240G0936' => 'eca', 'ECA240G1129' => 'eca', 'ECA247G0623' => 'eca', 'EL10Ac5g10451' => 'bvu', 'EL10Ac5g10453' => 'bvu', 'EL10Ac5g10894' => 'bvu', 'Eucgr.H00192' => 'egr', 'Eucgr.H00193' => 'egr', 'Eucgr.H00194' => 'egr', 'Eucgr.J01562' => 'egr', 'Eucgr.K03301' => 'egr', 'FAN02G0632' => 'fan', 'FAN05G5378' => 'fan', 'FAN09G3247' => 'fan', 'FAN12G0435' => 'fan', 'FAN12G2426' => 'fan', 'FAN14G1707' => 'fan', 'FAN14G4725' => 'fan', 'FAN15G2071' => 'fan', 'FAN17G3065' => 'fan', 'FAN19G1376' => 'fan', 'FAN20G0354' => 'fan', 'FAN20G2429' => 'fan', 'FAN20G2658' => 'fan', 'FAN24G2343' => 'fan', 'FAN27G2362' => 'fan', 'FAN28G1765' => 'fan', 'FvH4_1g16020' => 'fve', 'FvH4_2g04890' => 'fve', 'FvH4_2g22270' => 'fve', 'FvH4_4g02630' => 'fve', 'FvH4_4g02640' => 'fve', 'FvH4_6g02650' => 'fve', 'Glyma.02G140600' => 'gma', 'Glyma.03G159900' => 'gma', 'Glyma.05G234800' => 'gma', 'Glyma.07G269600' => 'gma', 'Glyma.08G042300' => 'gma', 'Glyma.10G033500' => 'gma', 'Glyma.10G185200' => 'gma', 'Glyma.17G004300' => 'gma', 'Glyma.19G161900' => 'gma', 'Glyma.20G205100' => 'gma', 'Glyma.20G205200' => 'gma', 'Gohir.A01G139101' => 'ghi', 'Gohir.A02G035600' => 'ghi', 'Gohir.A02G117901' => 'ghi', 'Gohir.A07G210100' => 'ghi', 'Gohir.A07G210200' => 'ghi', 'Gohir.A08G061100' => 'ghi', 'Gohir.A09G223000' => 'ghi', 'Gohir.A09G223100' => 'ghi', 'Gohir.A10G113900' => 'ghi', 'Gohir.A10G114000' => 'ghi', 'Gohir.D02G042300' => 'ghi', 'Gohir.D07G216100' => 'ghi', 'Gohir.D07G216200' => 'ghi', 'Gohir.D08G070400' => 'ghi', 'Gohir.D09G225000' => 'ghi', 'Gohir.D09G225100' => 'ghi', 'Gohir.D10G152300' => 'ghi', 'Gohir.D10G153200' => 'ghi', 'Gohir.D11G133701' => 'ghi', 'Gorai.004G074100' => 'gra', 'Gorai.005G046800' => 'gra', 'Gorai.006G246500' => 'gra', 'Gorai.006G246600' => 'gra', 'Gorai.007G142900' => 'gra', 'Gorai.011G171000' => 'gra', 'Gorai.011G171100' => 'gra', 'Gorai.013G104300' => 'gra', 'Gorai.013G104400' => 'gra', 'GSVIVG01000754001' => 'vvi', 'GSVIVG01000756001' => 'vvi', 'GSVIVG01010903001' => 'vvi', 'GSVIVG01017623001' => 'vvi', 'GSVIVG01018113001' => 'vvi', 'GSVIVG01018116001' => 'vvi', 'GSVIVG01018118001' => 'vvi', 'HanXRQChr03g0076211' => 'han', 'HanXRQChr03g0092431' => 'han', 'HanXRQChr03g0092441' => 'han', 'HanXRQChr03g0092591' => 'han', 'HanXRQChr03g0092671' => 'han', 'HanXRQChr03g0092681' => 'han', 'HanXRQChr03g0092691' => 'han', 'HanXRQChr03g0092701' => 'han', 'HanXRQChr03g0092721' => 'han', 'HanXRQChr03g0092731' => 'han', 'HanXRQChr04g0113681' => 'han', 'HanXRQChr10g0281371' => 'han', 'HanXRQChr11g0337141' => 'han', 'HanXRQChr13g0424521' => 'han', 'HanXRQChr13g0424531' => 'han', 'HanXRQChr13g0424541' => 'han', 'HanXRQChr16g0498221' => 'han', 'Haze_04377' => 'cav', 'Haze_11298' => 'cav', 'Haze_24547' => 'cav', 'Haze_24550' => 'cav', 'Haze_26587' => 'cav', 'Hma1.2p1_0650F.1_g195410' => 'hma', 'Hma1.2p1_0893F.1_g233470' => 'hma', 'HPP92_006508' => 'vpl', 'HPP92_024780' => 'vpl', 'Hund02688' => 'sun', 'Hund09380' => 'sun', 'Hund09381' => 'sun', 'Hund09832' => 'sun', 'Hund09833' => 'sun', 'Hund11351' => 'sun', 'Hund11513' => 'sun', 'Lalb_Chr06g0162591' => 'lal', 'Lalb_Chr06g0162601' => 'lal', 'Lalb_Chr06g0169321' => 'lal', 'Lalb_Chr09g0330951' => 'lal', 'Lalb_Chr16g0387631' => 'lal', 'Lalb_Chr21g0306241' => 'lal', 'Lalb_Chr25g0290051' => 'lal', 'Lalb_Chr25g0290061' => 'lal', 'Lalb_Chr25g0290071' => 'lal', 'Lj1g0003876' => 'lja', 'Lj1P1207T36' => 'lonja', 'Lj2C1156G12' => 'lonja', 'Lj3A793G39' => 'lonja', 'Lj3C580G2' => 'lonja', 'Lj3C780G2' => 'lonja', 'Lj3C780T4' => 'lonja', 'Lj3C793G9' => 'lonja', 'Lj4g0012960' => 'lja', 'Lj5g0021252' => 'lja', 'Lj5g0021484' => 'lja', 'Lj5g0024528' => 'lja', 'Lj6A399T12' => 'lonja', 'Lj6A656G65' => 'lonja', 'Lsat_1_v5_gn_3_125500' => 'lsa', 'Lsat_1_v5_gn_3_125540' => 'lsa', 'Lsat_1_v5_gn_5_72701' => 'lsa', 'Lsat_1_v5_gn_8_91560' => 'lsa', 'Lsat_1_v5_gn_9_9640' => 'lsa', 'Manes.01G200600' => 'mes', 'Manes.01G200700' => 'mes', 'Manes.03G168900' => 'mes', 'Manes.03G169000' => 'mes', 'Manes.05G085801' => 'mes', 'Manes.05G086200' => 'mes', 'Manes.15G036700' => 'mes', 'Manes.15G036900' => 'mes', 'Mapoly0004s0172' => 'mpo', 'Mapoly0023s0001' => 'mpo', 'Mapoly0142s0012' => 'mpo', 'MBI01_g32854_MAGBIO' => 'mbi', 'MBI11_g24427_MAGBIO' => 'mbi', 'MBI11_g47319_MAGBIO' => 'mbi', 'MCO01G433' => 'mco', 'MD00G1187800' => 'mdo', 'MD04G1226500' => 'mdo', 'MD05G1203900' => 'mdo', 'MD10G1191100' => 'mdo', 'MD12G1243500' => 'mdo', 'MD13G1207000' => 'mdo', 'MD13G1207100' => 'mdo', 'MD16G1208600' => 'mdo', 'Medtr1g050352' => 'mtr', 'Medtr1g070385' => 'mtr', 'Medtr1g070450' => 'mtr', 'Medtr1g075200' => 'mtr', 'Medtr1g075250' => 'mtr', 'Medtr1g075260' => 'mtr', 'Medtr1g475250' => 'mtr', 'Medtr4g075450' => 'mtr', 'Medtr7g096300' => 'mtr', 'Medtr8g105110' => 'mtr', 'MELO3C006470.2' => 'cme', 'MELO3C006471.2' => 'cme', 'MELO3C020772.2' => 'cme', 'MELO3C026780.2' => 'cme', 'MELO3C026781.2' => 'cme', 'Migut.D00390' => 'egut', 'Migut.G00435' => 'egut', 'Migut.G00436' => 'egut', 'Migut.G00718' => 'egut', 'MSTRG.21891' => 'ama', 'MSTRG.26910' => 'ama', 'MSTRG.4099' => 'ama', 'MSTRG.9925' => 'ama', 'Nitab4.5_0000165g0010' => 'nta', 'Nitab4.5_0000209g0180' => 'nta', 'Nitab4.5_0000244g0440' => 'nta', 'Nitab4.5_0000525g0220' => 'nta', 'Nitab4.5_0001597g0020' => 'nta', 'Nitab4.5_0001878g0040' => 'nta', 'Nitab4.5_0001878g0060' => 'nta', 'Nitab4.5_0002838g0100' => 'nta', 'Nitab4.5_0002838g0120' => 'nta', 'Nitab4.5_0004798g0030' => 'nta', 'Nitab4.5_0005420g0010' => 'nta', 'Nitab4.5_0005507g0010' => 'nta', 'Nitab4.5_0005574g0020' => 'nta', 'Nitab4.5_0005838g0010' => 'nta', 'Nitab4.5_0010580g0020' => 'nta', 'Nn1g02599' => 'nnu', 'Nn1g02608' => 'nnu', 'Nn3g17742' => 'nnu', 'Nn3g19534' => 'nnu', 'Nn3g19535' => 'nnu', 'Oeu008790.1' => 'oeu', 'Oeu008792.1' => 'oeu', 'Oeu032590.1' => 'oeu', 'Oeu035349.1' => 'oeu', 'Oeu049791.1' => 'oeu', 'Os01g0774500' => 'osa', 'Os03g0628800' => 'osa', 'Os03g0798600' => 'osa', 'Os05g0508800' => 'osa', 'Peaxi162Scf00036g02018' => 'pax', 'Peaxi162Scf00578g00032' => 'pax', 'Peaxi162Scf00578g00317' => 'pax', 'Peaxi162Scf00785g00114' => 'pax', 'Peaxi162Scf00813g00119' => 'pax', 'Peaxi162Scf00906g00227' => 'pax', 'PGR004G0875' => 'pgr', 'PGR004G2424' => 'pgr', 'PGR031G1239' => 'pgr', 'PGR031G2474' => 'pgr', 'PGR044G0423' => 'pgr', 'PGSC0003DMG400001128' => 'stu', 'PGSC0003DMG400007336' => 'stu', 'PGSC0003DMG400016318' => 'stu', 'PGSC0003DMG400016319' => 'stu', 'PGSC0003DMG400018074' => 'stu', 'Phvul.001G157700' => 'pvu', 'Phvul.002G148550' => 'pvu', 'Phvul.002G320200' => 'pvu', 'Phvul.003G089200' => 'pvu', 'Phvul.007G126000' => 'pvu', 'Phvul.007G126100' => 'pvu', 'Phvul.007G178000' => 'pvu', 'Phvul.007G178200' => 'pvu', 'Potri.002G043000' => 'ptr', 'Potri.002G043200' => 'ptr', 'Potri.003G123750' => 'ptr', 'Potri.005G055401' => 'ptr', 'Potri.005G219700' => 'ptr', 'Potri.005G220000' => 'ptr', 'Potri.008G161901' => 'ptr', 'Potri.008G162000' => 'ptr', 'Potri.008G162400' => 'ptr', 'Potri.010G076900' => 'ptr', 'Pp3c12_9180' => 'ppa', 'Pp3c13_19770' => 'ppa', 'Pp3c14_22950' => 'ppa', 'Pp3c16_12160' => 'ppa', 'Pp3c27_7820' => 'ppa', 'Pp3c2_3490' => 'ppa', 'Pp3c3_23700' => 'ppa', 'Pp3c3_36520' => 'ppa', 'Pp3c4_15250' => 'ppa', 'PRCOL_00007002' => 'pco', 'Prupe.1G030600' => 'ppe', 'Prupe.1G030700' => 'ppe', 'Prupe.6G345200' => 'ppe', 'Prupe.8G230300' => 'ppe', 'Prupe.8G230500' => 'ppe', 'Psat3g059600' => 'psa', 'Psat5g200920' => 'psa', 'Psat6g056440' => 'psa', 'Psat6g057360' => 'psa', 'Psat6g134120' => 'psa', 'Psat6g134160' => 'psa', 'Psat7g008640' => 'psa', 'Psat7g185240' => 'psa', 'PSO017G1330' => 'pso', 'PSO063G6097' => 'pso', 'PSO170G0835' => 'pso', 'PSO170G2499' => 'pso', 'PSO210G5058' => 'pso', 'PSO210G6154' => 'pso', 'PSO585G0031' => 'pso', 'PSO832G0264' => 'pso', 'PSO832G4288' => 'pso', 'QL03p027355' => 'qlo', 'QL03p027430' => 'qlo', 'QL04p081380' => 'qlo', 'QL06p015642' => 'qlo', 'QL06p015650' => 'qlo', 'QL06p015686' => 'qlo', 'QL12p042927' => 'qlo', 'QL93p1863_0035' => 'qlo', 'RcHm_v2.0_Chr3g0450581' => 'rch', 'RcHm_v2.0_Chr4g0390371' => 'rch', 'RcHm_v2.0_Chr4g0390381' => 'rch', 'RcHm_v2.0_Chr4g0390491' => 'rch', 'RcHm_v2.0_Chr4g0390501' => 'rch', 'RcHm_v2.0_Chr6g0289231' => 'rch', 'Rhsim04G0190400' => 'rsi', 'Rhsim04G0190500' => 'rsi', 'Rhsim04G0190600' => 'rsi', 'Rhsim13G0031400' => 'rsi', 'Rhsim13G0165600' => 'rsi', 'RhsimUnG0114600' => 'rsi', 'RhsimUnG0114700' => 'rsi', 'Sabra02G0034800' => 'sbr', 'Sabra02G0035100' => 'sbr', 'Sabra05G0168600' => 'sbr', 'Sabra05G0168800' => 'sbr', 'Sabra08G0123700' => 'sbr', 'Sabra10G0031900' => 'sbr', 'Sabra13G0039000' => 'sbr', 'SalBow2G0782' => 'sbo', 'SalBow2G1403' => 'sbo', 'SalBow4G0074' => 'sbo', 'SalBow4G2635' => 'sbo', 'SalBow5G3010' => 'sbo', 'Sc05g0000870' => 'sci', 'Sc05g0000890' => 'sci', 'Sc13g0005000' => 'sci', 'Sc13g0005030' => 'sci', 'Sc19g0003790' => 'sci', 'Sc19g0003800' => 'sci', 'Sed0003467' => 'sed', 'Sed0009355' => 'sed', 'Sed0009894' => 'sed', 'Sed0011972' => 'sed', 'Sed0021483' => 'sed', 'Sed0021750' => 'sed', 'Sed0026279' => 'sed', 'SEGI_05312' => 'sgi', 'SEGI_10112' => 'sgi', 'SEGI_15835' => 'sgi', 'SEGI_30386' => 'sgi', 'SEGI_34122' => 'sgi', 'SEGI_35063' => 'sgi', 'SGA_v2.0_scaffold101G29794' => 'sas', 'SGA_v2.0_scaffold1G00573' => 'sas', 'SGA_v2.0_scaffold79G25637' => 'sas', 'SGA_v2.0_scaffold88G27283' => 'sas', 'SGA_v2.0_scaffold88G27285' => 'sas', 'SGA_v2.0_scaffold88G27331' => 'sas', 'SHI09937' => 'shi', 'SMO119G0302' => 'smo', 'SMO137G0231' => 'smo', 'SMO367G1151' => 'smo', 'Solyc02g082000.3' => 'sly', 'Solyc06g031670.3' => 'sly', 'Solyc06g053810.3' => 'sly', 'Solyc07g025457.1' => 'sly', 'Solyc08g059740.1' => 'sly', 'Solyc08g059750.3' => 'sly', 'Solyc09g083370.3' => 'sly', 'Solyc12g038950.3' => 'sly', 'Sopen02g026630' => 'spe', 'Sopen06g018930' => 'spe', 'Sopen06g018940' => 'spe', 'Sopen08g009460' => 'spe', 'Sopen09g032290' => 'spe', 'Sp1g03080' => 'spa', 'Sp1g03090' => 'spa', 'Sp1g05480' => 'spa', 'Sp2g07860' => 'spa', 'Sp2g08430' => 'spa', 'Sp2g08440' => 'spa', 'Sp2g26200' => 'spa', 'Sp4g13170' => 'spa', 'Sp6g33840' => 'spa', 'SpUn1204_0010' => 'spa', 'TAR365G0908' => 'tar', 'TAR381G1270' => 'tar', 'TAR381G1651' => 'tar', 'TAR625G1131' => 'tar', 'TAR633G0962' => 'tar', 'TAR633G1729' => 'tar', 'TAR633G1864' => 'tar', 'TAR636G0221' => 'tar', 'TAR636G0314' => 'tar', 'TAR636G3202' => 'tar', 'THA.LOC104800805' => 'tha', 'THA.LOC104801096' => 'tha', 'THA.LOC104801555' => 'tha', 'THA.LOC104808491' => 'tha', 'THA.LOC104808595' => 'tha', 'THA.LOC104815985' => 'tha', 'THA.LOC104822250' => 'tha', 'THA.LOC104826071' => 'tha', 'Thecc.01G265200' => 'tca', 'Thecc.01G265300' => 'tca', 'Thecc.01G265700' => 'tca', 'Thecc.03G109100' => 'tca', 'Thecc.04G245900' => 'tca', 'Thecc.04G246000' => 'tca', 'Thhalv10003334m.g' => 'esa', 'Thhalv10005508m.g' => 'esa', 'Thhalv10005643m.g' => 'esa', 'Thhalv10007316m.g' => 'esa', 'Thhalv10009006m.g' => 'esa', 'Thhalv10009309m.g' => 'esa', 'Thhalv10014917m.g' => 'esa', 'Thhalv10014919m.g' => 'esa', 'Thhalv10015393m.g' => 'esa', 'Thhalv10016515m.g' => 'esa', 'Thhalv10029242m.g' => 'esa', 'TPR.G16654' => 'tpr', 'TPR.G20589' => 'tpr', 'TPR.G23029' => 'tpr', 'TPR.G27731' => 'tpr', 'TPR.G28889' => 'tpr', 'TPR.G28899' => 'tpr', 'TPR.G30846' => 'tpr', 'TPR.G5452' => 'tpr', 'TPR.G5713' => 'tpr', 'TPR.G9046' => 'tpr', 'TPR.G9061' => 'tpr', 'TWI09G1075' => 'twi', 'TWI12G0806' => 'twi', 'TWI18G0108' => 'twi', 'TWI53G1361' => 'twi', 'TWI73G0185' => 'twi', 'TWI73G0427' => 'twi', 'unitig_37.g12001' => 'ugi', 'unitig_747.g21660' => 'ugi', 'unitig_748.g7232' => 'ugi', 'unitig_748.g7315' => 'ugi', 'unitig_85.g27262' => 'ugi', 'unitig_92.g28220' => 'ugi', 'vmacro02632' => 'vma', 'vmacro08410' => 'vma', 'vmacro08411' => 'vma', 'vmacro15407' => 'vma', 'VMungo0251G3619' => 'vmu', 'VMungo0720G1204' => 'vmu', 'VMungo0720G1918' => 'vmu', 'VMungo0720G2387' => 'vmu', 'VMungo0720G2961' => 'vmu', 'VMungo1215G2154' => 'vmu', 'VMungo1383G2411' => 'vmu', 'Zm00001eb051130' => 'zma', 'Zm00001eb116830' => 'zma', 'Zm00001eb116850' => 'zma', 'Zm00001eb151740' => 'zma', 'Zm00001eb292360' => 'zma', 'Zm00001eb301640' => 'zma' ) $gf_id = 'HOM05D000856' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000856' ) $data_identifier = 'HOM05D000856' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 13, 'ath' => (int) 10, 'atr' => (int) 1, 'acertr' => (int) 8, 'cqu' => (int) 6, 'bca' => (int) 21, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 11, 'car' => (int) 9, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 8, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 5, 'fan' => (int) 16, 'fve' => (int) 6, 'gma' => (int) 11, 'ghi' => (int) 19, 'gra' => (int) 9, 'vvi' => (int) 7, 'han' => (int) 17, 'cav' => (int) 5, 'hma' => (int) 2, 'vpl' => (int) 2, 'sun' => (int) 7, 'lal' => (int) 9, 'lja' => (int) 5, 'lonja' => (int) 9, 'lsa' => (int) 5, 'mes' => (int) 8, 'mpo' => (int) 3, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 10, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 15, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 9, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 9, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 6, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 5, 'spa' => (int) 10, 'tar' => (int) 10, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 11, 'tpr' => (int) 11, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 4, 'vmu' => (int) 7, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb301640' $species_info = array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ) $local_species = 'sci' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000856', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p00010' => 'bna', 'A03p04160' => 'bna', 'A03p17160' => 'bna', 'A04p23370' => 'bna', 'A05p14860' => 'bna', 'A08p37020' => 'bna', 'A09p08050' => 'bna', 'A09p66800' => 'bna', 'A09p67940' => 'bna', 'A10p02680' => 'bna', 'A10p05320' => 'bna', 'Aa31LG1G20560' => 'aar', 'Aa31LG1G20610' => 'aar', 'Aa31LG1G7810' => 'aar', 'Aa31LG5G3590' => 'aar', 'Aa31LG5G6140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3819' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4683' => 'aag', 'Actinidia04480' => 'ach', 'Actinidia05466' => 'ach', 'Actinidia08445' => 'ach', 'Actinidia21170' => 'ach', 'Actinidia24812' => 'ach', 'Actinidia24951' => 'ach', 'Actinidia40088' => 'ach', 'Ah.02g111660' => 'amhyb', 'Ah.11g048900' => 'amhyb', 'Ah.11g049910' => 'amhyb', 'AL1G13870' => 'aly', 'AL1G13880' => 'aly', 'AL1G16760' => 'aly', 'AL390U10020' => 'aly', 'AL4G25520' => 'aly', 'AL6G19890' => 'aly', 'AL6G19900' => 'aly', 'AL6G19910' => 'aly', 'AL8G40100' => 'aly', 'Aqoxy2G03562' => 'aox', 'Aqoxy5G00316' => 'aox', 'Aqoxy5G00926' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1628KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1H403S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2FU6SJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.882I6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8YRY2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YN1SN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AF70II' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZA8L1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F916KL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHRD8H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KTZ8QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S22EMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8M29T' => 'arhy', 'AT1G04270' => 'ath', 'AT1G04280' => 'ath', 'AT1G06750' => 'ath', 'AT1G33850' => 'ath', 'AT2G30630' => 'ath', 'AT5G09490' => 'ath', 'AT5G09500' => 'ath', 'AT5G09510' => 'ath', 'AT5G43640' => 'ath', 'AT5G63070' => 'ath', 'ATR0605G315' => 'atr', 'Atru.chr11.175' => 'acertr', 'Atru.chr11.653' => 'acertr', 'Atru.chr3.1616' => 'acertr', 'Atru.chr4.2230' => 'acertr', 'Atru.chr4.2232' => 'acertr', 'Atru.chr5.1598' => 'acertr', 'Atru.chr5.1600' => 'acertr', 'Atru.chr5.2188' => 'acertr', 'AUR62008326' => 'cqu', 'AUR62011922' => 'cqu', 'AUR62011924' => 'cqu', 'AUR62021771' => 'cqu', 'AUR62032237' => 'cqu', 'AUR62032240' => 'cqu', 'BcaB01g05572' => 'bca', 'BcaB02g10337' => 'bca', 'BcaB04g19944' => 'bca', 'BcaB05g21548' => 'bca', 'BcaB05g21549' => 'bca', 'BcaB05g23227' => 'bca', 'BcaB06g26256' => 'bca', 'BcaB06g26257' => 'bca', 'BcaB06g28379' => 'bca', 'BcaC02g11159' => 'bca', 'BcaC03g13258' => 'bca', 'BcaC03g13259' => 'bca', 'BcaC05g24456' => 'bca', 'BcaC05g24457' => 'bca', 'BcaC07g36922' => 'bca', 'BcaC07g36923' => 'bca', 'BcaC07g42050' => 'bca', 'BcaC07g42176' => 'bca', 'BcaC07g42195' => 'bca', 'BcaC07g42196' => 'bca', 'BcaNung06674' => 'bca', 'BolC2t06351H' => 'bol', 'BolC2t06352H' => 'bol', 'BolC3t12993H' => 'bol', 'BolC4t23525H' => 'bol', 'BolC4t27475H' => 'bol', 'BolC5t29025H' => 'bol', 'BolC5t29026H' => 'bol', 'BolC8t46898H' => 'bol', 'BolC8t46899H' => 'bol', 'BolC8t52630H' => 'bol', 'BolC8t52765H' => 'bol', 'BolC9t53824H' => 'bol', 'BraA03t09760Z' => 'bra', 'BraA03t10990Z' => 'bra', 'BraA05t20413Z' => 'bra', 'BraA08t35602Z' => 'bra', 'BraA09t36458Z' => 'bra', 'BraA09t42018Z' => 'bra', 'BraA09t42129Z' => 'bra', 'BraA10t42536Z' => 'bra', 'BraA10t42537Z' => 'bra', 'C01p10690' => 'bna', 'C02p03890' => 'bna', 'C02p03900' => 'bna', 'C03p04620' => 'bna', 'C04p19870' => 'bna', 'C04p59670' => 'bna', 'C05p02460' => 'bna', 'C05p02470' => 'bna', 'C08p00980' => 'bna', 'C08p00990' => 'bna', 'C08p51030' => 'bna', 'C08p52360' => 'bna', 'C09p09120' => 'bna', 'CAN.G19.15' => 'can', 'CAN.G251.10' => 'can', 'CAN.G251.9' => 'can', 'CAN.G398.24' => 'can', 'CAN.G410.32' => 'can', 'CAN.G881.2' => 'can', 'CANSAT01G3025' => 'cansat', 'CANSAT78G1211' => 'cansat', 'CANSAT78G1218' => 'cansat', 'CANSAT78G1521' => 'cansat', 'CANSAT78G1670' => 'cansat', 'CARHR003600' => 'chi', 'CARHR003610' => 'chi', 'CARHR006290' => 'chi', 'CARHR006430' => 'chi', 'CARHR124110' => 'chi', 'CARHR203870' => 'chi', 'CARHR203880' => 'chi', 'CARHR203890' => 'chi', 'CARHR276880' => 'chi', 'Carub.0001s0346' => 'cru', 'Carub.0001s0347' => 'cru', 'Carub.0001s0607' => 'cru', 'Carub.0003s2768' => 'cru', 'Carub.0003s2769' => 'cru', 'Carub.0004s1178' => 'cru', 'Carub.0006s0806' => 'cru', 'Carub.0006s0807' => 'cru', 'Carub.0006s0808' => 'cru', 'Carub.0008s0501' => 'cru', 'Carub.0008s2379' => 'cru', 'Ca_08655_v3' => 'car', 'Ca_08922_v3' => 'car', 'Ca_08923_v3' => 'car', 'Ca_09119_v3' => 'car', 'Ca_09703_v3' => 'car', 'Ca_09705_v3' => 'car', 'Ca_09835_v3' => 'car', 'Ca_26403_v3' => 'car', 'Ca_30719_v3' => 'car', 'CBR_g17958' => 'cbr', 'CBR_g40516' => 'cbr', 'Cc00_g05350' => 'ccan', 'Cc01_g18690' => 'ccan', 'Cc03_g04830' => 'ccan', 'Cc03_g04850' => 'ccan', 'CDE02G4469' => 'cde', 'CDE06G0883' => 'cde', 'CDE06G1295' => 'cde', 'CDE06G1390' => 'cde', 'CDE07G0584' => 'cde', 'CDE07G1084' => 'cde', 'CDE08G1259' => 'cde', 'Cfa002341' => 'cfa', 'Cfa024337' => 'cfa', 'Ciclev10004749m.g' => 'ccl', 'Ciclev10006127m.g' => 'ccl', 'Ciclev10019720m.g' => 'ccl', 'Ciclev10022652m.g' => 'ccl', 'CiPaw.01G190400' => 'cil', 'CiPaw.01G190500' => 'cil', 'CiPaw.02G116400' => 'cil', 'CiPaw.02G116500' => 'cil', 'CiPaw.04G183000' => 'cil', 'CiPaw.04G183300' => 'cil', 'ClCG05G004610' => 'cla', 'ClCG05G004620' => 'cla', 'ClCG06G006730' => 'cla', 'ClCG06G006740' => 'cla', 'ClCG11G003690' => 'cla', 'COL.COLO4_08276' => 'col', 'COL.COLO4_08277' => 'col', 'COL.COLO4_15787' => 'col', 'COL.COLO4_15789' => 'col', 'Cpa.g.c44815' => 'cpa', 'Cpa.g.sc52.144' => 'cpa', 'Cpa.g.sc58.46' => 'cpa', 'Cpa.g.sc58.47' => 'cpa', 'Cre08.g360900' => 'cre', 'CsaV3_2G013030' => 'csa', 'CsaV3_2G013050' => 'csa', 'CsaV3_2G015620' => 'csa', 'CsaV3_3G012590' => 'csa', 'CsaV3_3G012600' => 'csa', 'CSS0001641' => 'camsi', 'CSS0008310' => 'camsi', 'CSS0013011' => 'camsi', 'CSS0017147' => 'camsi', 'CSS0022970' => 'camsi', 'CSS0025655' => 'camsi', 'CSS0028665' => 'camsi', 'CSS0029117' => 'camsi', 'CSS0032024' => 'camsi', 'CSS0039681' => 'camsi', 'CSS0046516' => 'camsi', 'CSS0050307' => 'camsi', 'DCAR_005871' => 'dca', 'DCAR_007342' => 'dca', 'DCAR_024228' => 'dca', 'DCAR_027277' => 'dca', 'DCAR_030718' => 'dca', 'Dinv20287' => 'din', 'Dinv22461' => 'din', 'Dinv22464' => 'din', 'Dinv29912' => 'din', 'Dinv29913' => 'din', 'Dinv34580' => 'din', 'Dinv34582' => 'din', 'Dinv44632' => 'din', 'Duzib052G0266' => 'dzi', 'Duzib133G0907' => 'dzi', 'Duzib133G1034' => 'dzi', 'Duzib138G0207' => 'dzi', 'Duzib138G0491' => 'dzi', 'Duzib151G0812' => 'dzi', 'Duzib151G1166' => 'dzi', 'Duzib168G0192' => 'dzi', 'Duzib211G0077' => 'dzi', 'Duzib212G0429' => 'dzi', 'Duzib212G0472' => 'dzi', 'ECA233G2617' => 'eca', 'ECA236G4188' => 'eca', 'ECA240G0936' => 'eca', 'ECA240G1129' => 'eca', 'ECA247G0623' => 'eca', 'EL10Ac5g10451' => 'bvu', 'EL10Ac5g10453' => 'bvu', 'EL10Ac5g10894' => 'bvu', 'Eucgr.H00192' => 'egr', 'Eucgr.H00193' => 'egr', 'Eucgr.H00194' => 'egr', 'Eucgr.J01562' => 'egr', 'Eucgr.K03301' => 'egr', 'FAN02G0632' => 'fan', 'FAN05G5378' => 'fan', 'FAN09G3247' => 'fan', 'FAN12G0435' => 'fan', 'FAN12G2426' => 'fan', 'FAN14G1707' => 'fan', 'FAN14G4725' => 'fan', 'FAN15G2071' => 'fan', 'FAN17G3065' => 'fan', 'FAN19G1376' => 'fan', 'FAN20G0354' => 'fan', 'FAN20G2429' => 'fan', 'FAN20G2658' => 'fan', 'FAN24G2343' => 'fan', 'FAN27G2362' => 'fan', 'FAN28G1765' => 'fan', 'FvH4_1g16020' => 'fve', 'FvH4_2g04890' => 'fve', 'FvH4_2g22270' => 'fve', 'FvH4_4g02630' => 'fve', 'FvH4_4g02640' => 'fve', 'FvH4_6g02650' => 'fve', 'Glyma.02G140600' => 'gma', 'Glyma.03G159900' => 'gma', 'Glyma.05G234800' => 'gma', 'Glyma.07G269600' => 'gma', 'Glyma.08G042300' => 'gma', 'Glyma.10G033500' => 'gma', 'Glyma.10G185200' => 'gma', 'Glyma.17G004300' => 'gma', 'Glyma.19G161900' => 'gma', 'Glyma.20G205100' => 'gma', 'Glyma.20G205200' => 'gma', 'Gohir.A01G139101' => 'ghi', 'Gohir.A02G035600' => 'ghi', 'Gohir.A02G117901' => 'ghi', 'Gohir.A07G210100' => 'ghi', 'Gohir.A07G210200' => 'ghi', 'Gohir.A08G061100' => 'ghi', 'Gohir.A09G223000' => 'ghi', 'Gohir.A09G223100' => 'ghi', 'Gohir.A10G113900' => 'ghi', 'Gohir.A10G114000' => 'ghi', 'Gohir.D02G042300' => 'ghi', 'Gohir.D07G216100' => 'ghi', 'Gohir.D07G216200' => 'ghi', 'Gohir.D08G070400' => 'ghi', 'Gohir.D09G225000' => 'ghi', 'Gohir.D09G225100' => 'ghi', 'Gohir.D10G152300' => 'ghi', 'Gohir.D10G153200' => 'ghi', 'Gohir.D11G133701' => 'ghi', 'Gorai.004G074100' => 'gra', 'Gorai.005G046800' => 'gra', 'Gorai.006G246500' => 'gra', 'Gorai.006G246600' => 'gra', 'Gorai.007G142900' => 'gra', 'Gorai.011G171000' => 'gra', 'Gorai.011G171100' => 'gra', 'Gorai.013G104300' => 'gra', 'Gorai.013G104400' => 'gra', 'GSVIVG01000754001' => 'vvi', 'GSVIVG01000756001' => 'vvi', 'GSVIVG01010903001' => 'vvi', 'GSVIVG01017623001' => 'vvi', 'GSVIVG01018113001' => 'vvi', 'GSVIVG01018116001' => 'vvi', 'GSVIVG01018118001' => 'vvi', 'HanXRQChr03g0076211' => 'han', 'HanXRQChr03g0092431' => 'han', 'HanXRQChr03g0092441' => 'han', 'HanXRQChr03g0092591' => 'han', 'HanXRQChr03g0092671' => 'han', 'HanXRQChr03g0092681' => 'han', 'HanXRQChr03g0092691' => 'han', 'HanXRQChr03g0092701' => 'han', 'HanXRQChr03g0092721' => 'han', 'HanXRQChr03g0092731' => 'han', 'HanXRQChr04g0113681' => 'han', 'HanXRQChr10g0281371' => 'han', 'HanXRQChr11g0337141' => 'han', 'HanXRQChr13g0424521' => 'han', 'HanXRQChr13g0424531' => 'han', 'HanXRQChr13g0424541' => 'han', 'HanXRQChr16g0498221' => 'han', 'Haze_04377' => 'cav', 'Haze_11298' => 'cav', 'Haze_24547' => 'cav', 'Haze_24550' => 'cav', 'Haze_26587' => 'cav', 'Hma1.2p1_0650F.1_g195410' => 'hma', 'Hma1.2p1_0893F.1_g233470' => 'hma', 'HPP92_006508' => 'vpl', 'HPP92_024780' => 'vpl', 'Hund02688' => 'sun', 'Hund09380' => 'sun', 'Hund09381' => 'sun', 'Hund09832' => 'sun', 'Hund09833' => 'sun', 'Hund11351' => 'sun', 'Hund11513' => 'sun', 'Lalb_Chr06g0162591' => 'lal', 'Lalb_Chr06g0162601' => 'lal', 'Lalb_Chr06g0169321' => 'lal', 'Lalb_Chr09g0330951' => 'lal', 'Lalb_Chr16g0387631' => 'lal', 'Lalb_Chr21g0306241' => 'lal', 'Lalb_Chr25g0290051' => 'lal', 'Lalb_Chr25g0290061' => 'lal', 'Lalb_Chr25g0290071' => 'lal', 'Lj1g0003876' => 'lja', 'Lj1P1207T36' => 'lonja', 'Lj2C1156G12' => 'lonja', 'Lj3A793G39' => 'lonja', 'Lj3C580G2' => 'lonja', 'Lj3C780G2' => 'lonja', 'Lj3C780T4' => 'lonja', 'Lj3C793G9' => 'lonja', 'Lj4g0012960' => 'lja', 'Lj5g0021252' => 'lja', 'Lj5g0021484' => 'lja', 'Lj5g0024528' => 'lja', 'Lj6A399T12' => 'lonja', 'Lj6A656G65' => 'lonja', 'Lsat_1_v5_gn_3_125500' => 'lsa', 'Lsat_1_v5_gn_3_125540' => 'lsa', 'Lsat_1_v5_gn_5_72701' => 'lsa', 'Lsat_1_v5_gn_8_91560' => 'lsa', 'Lsat_1_v5_gn_9_9640' => 'lsa', 'Manes.01G200600' => 'mes', 'Manes.01G200700' => 'mes', 'Manes.03G168900' => 'mes', 'Manes.03G169000' => 'mes', 'Manes.05G085801' => 'mes', 'Manes.05G086200' => 'mes', 'Manes.15G036700' => 'mes', 'Manes.15G036900' => 'mes', 'Mapoly0004s0172' => 'mpo', 'Mapoly0023s0001' => 'mpo', 'Mapoly0142s0012' => 'mpo', 'MBI01_g32854_MAGBIO' => 'mbi', 'MBI11_g24427_MAGBIO' => 'mbi', 'MBI11_g47319_MAGBIO' => 'mbi', 'MCO01G433' => 'mco', 'MD00G1187800' => 'mdo', 'MD04G1226500' => 'mdo', 'MD05G1203900' => 'mdo', 'MD10G1191100' => 'mdo', 'MD12G1243500' => 'mdo', 'MD13G1207000' => 'mdo', 'MD13G1207100' => 'mdo', 'MD16G1208600' => 'mdo', 'Medtr1g050352' => 'mtr', 'Medtr1g070385' => 'mtr', 'Medtr1g070450' => 'mtr', 'Medtr1g075200' => 'mtr', 'Medtr1g075250' => 'mtr', 'Medtr1g075260' => 'mtr', 'Medtr1g475250' => 'mtr', 'Medtr4g075450' => 'mtr', 'Medtr7g096300' => 'mtr', 'Medtr8g105110' => 'mtr', 'MELO3C006470.2' => 'cme', 'MELO3C006471.2' => 'cme', 'MELO3C020772.2' => 'cme', 'MELO3C026780.2' => 'cme', 'MELO3C026781.2' => 'cme', 'Migut.D00390' => 'egut', 'Migut.G00435' => 'egut', 'Migut.G00436' => 'egut', 'Migut.G00718' => 'egut', 'MSTRG.21891' => 'ama', 'MSTRG.26910' => 'ama', 'MSTRG.4099' => 'ama', 'MSTRG.9925' => 'ama', 'Nitab4.5_0000165g0010' => 'nta', 'Nitab4.5_0000209g0180' => 'nta', 'Nitab4.5_0000244g0440' => 'nta', 'Nitab4.5_0000525g0220' => 'nta', 'Nitab4.5_0001597g0020' => 'nta', 'Nitab4.5_0001878g0040' => 'nta', 'Nitab4.5_0001878g0060' => 'nta', 'Nitab4.5_0002838g0100' => 'nta', 'Nitab4.5_0002838g0120' => 'nta', 'Nitab4.5_0004798g0030' => 'nta', 'Nitab4.5_0005420g0010' => 'nta', 'Nitab4.5_0005507g0010' => 'nta', 'Nitab4.5_0005574g0020' => 'nta', 'Nitab4.5_0005838g0010' => 'nta', 'Nitab4.5_0010580g0020' => 'nta', 'Nn1g02599' => 'nnu', 'Nn1g02608' => 'nnu', 'Nn3g17742' => 'nnu', 'Nn3g19534' => 'nnu', 'Nn3g19535' => 'nnu', 'Oeu008790.1' => 'oeu', 'Oeu008792.1' => 'oeu', 'Oeu032590.1' => 'oeu', 'Oeu035349.1' => 'oeu', 'Oeu049791.1' => 'oeu', 'Os01g0774500' => 'osa', 'Os03g0628800' => 'osa', 'Os03g0798600' => 'osa', 'Os05g0508800' => 'osa', 'Peaxi162Scf00036g02018' => 'pax', 'Peaxi162Scf00578g00032' => 'pax', 'Peaxi162Scf00578g00317' => 'pax', 'Peaxi162Scf00785g00114' => 'pax', 'Peaxi162Scf00813g00119' => 'pax', 'Peaxi162Scf00906g00227' => 'pax', 'PGR004G0875' => 'pgr', 'PGR004G2424' => 'pgr', 'PGR031G1239' => 'pgr', 'PGR031G2474' => 'pgr', 'PGR044G0423' => 'pgr', 'PGSC0003DMG400001128' => 'stu', 'PGSC0003DMG400007336' => 'stu', 'PGSC0003DMG400016318' => 'stu', 'PGSC0003DMG400016319' => 'stu', 'PGSC0003DMG400018074' => 'stu', 'Phvul.001G157700' => 'pvu', 'Phvul.002G148550' => 'pvu', 'Phvul.002G320200' => 'pvu', 'Phvul.003G089200' => 'pvu', 'Phvul.007G126000' => 'pvu', 'Phvul.007G126100' => 'pvu', 'Phvul.007G178000' => 'pvu', 'Phvul.007G178200' => 'pvu', 'Potri.002G043000' => 'ptr', 'Potri.002G043200' => 'ptr', 'Potri.003G123750' => 'ptr', 'Potri.005G055401' => 'ptr', 'Potri.005G219700' => 'ptr', 'Potri.005G220000' => 'ptr', 'Potri.008G161901' => 'ptr', 'Potri.008G162000' => 'ptr', 'Potri.008G162400' => 'ptr', 'Potri.010G076900' => 'ptr', 'Pp3c12_9180' => 'ppa', 'Pp3c13_19770' => 'ppa', 'Pp3c14_22950' => 'ppa', 'Pp3c16_12160' => 'ppa', 'Pp3c27_7820' => 'ppa', 'Pp3c2_3490' => 'ppa', 'Pp3c3_23700' => 'ppa', 'Pp3c3_36520' => 'ppa', 'Pp3c4_15250' => 'ppa', 'PRCOL_00007002' => 'pco', 'Prupe.1G030600' => 'ppe', 'Prupe.1G030700' => 'ppe', 'Prupe.6G345200' => 'ppe', 'Prupe.8G230300' => 'ppe', 'Prupe.8G230500' => 'ppe', 'Psat3g059600' => 'psa', 'Psat5g200920' => 'psa', 'Psat6g056440' => 'psa', 'Psat6g057360' => 'psa', 'Psat6g134120' => 'psa', 'Psat6g134160' => 'psa', 'Psat7g008640' => 'psa', 'Psat7g185240' => 'psa', 'PSO017G1330' => 'pso', 'PSO063G6097' => 'pso', 'PSO170G0835' => 'pso', 'PSO170G2499' => 'pso', 'PSO210G5058' => 'pso', 'PSO210G6154' => 'pso', 'PSO585G0031' => 'pso', 'PSO832G0264' => 'pso', 'PSO832G4288' => 'pso', 'QL03p027355' => 'qlo', 'QL03p027430' => 'qlo', 'QL04p081380' => 'qlo', 'QL06p015642' => 'qlo', 'QL06p015650' => 'qlo', 'QL06p015686' => 'qlo', 'QL12p042927' => 'qlo', 'QL93p1863_0035' => 'qlo', 'RcHm_v2.0_Chr3g0450581' => 'rch', 'RcHm_v2.0_Chr4g0390371' => 'rch', 'RcHm_v2.0_Chr4g0390381' => 'rch', 'RcHm_v2.0_Chr4g0390491' => 'rch', 'RcHm_v2.0_Chr4g0390501' => 'rch', 'RcHm_v2.0_Chr6g0289231' => 'rch', 'Rhsim04G0190400' => 'rsi', 'Rhsim04G0190500' => 'rsi', 'Rhsim04G0190600' => 'rsi', 'Rhsim13G0031400' => 'rsi', 'Rhsim13G0165600' => 'rsi', 'RhsimUnG0114600' => 'rsi', 'RhsimUnG0114700' => 'rsi', 'Sabra02G0034800' => 'sbr', 'Sabra02G0035100' => 'sbr', 'Sabra05G0168600' => 'sbr', 'Sabra05G0168800' => 'sbr', 'Sabra08G0123700' => 'sbr', 'Sabra10G0031900' => 'sbr', 'Sabra13G0039000' => 'sbr', 'SalBow2G0782' => 'sbo', 'SalBow2G1403' => 'sbo', 'SalBow4G0074' => 'sbo', 'SalBow4G2635' => 'sbo', 'SalBow5G3010' => 'sbo', 'Sc05g0000870' => 'sci', 'Sc05g0000890' => 'sci', 'Sc13g0005000' => 'sci', 'Sc13g0005030' => 'sci', 'Sc19g0003790' => 'sci', 'Sc19g0003800' => 'sci', 'Sed0003467' => 'sed', 'Sed0009355' => 'sed', 'Sed0009894' => 'sed', 'Sed0011972' => 'sed', 'Sed0021483' => 'sed', 'Sed0021750' => 'sed', 'Sed0026279' => 'sed', 'SEGI_05312' => 'sgi', 'SEGI_10112' => 'sgi', 'SEGI_15835' => 'sgi', 'SEGI_30386' => 'sgi', 'SEGI_34122' => 'sgi', 'SEGI_35063' => 'sgi', 'SGA_v2.0_scaffold101G29794' => 'sas', 'SGA_v2.0_scaffold1G00573' => 'sas', 'SGA_v2.0_scaffold79G25637' => 'sas', 'SGA_v2.0_scaffold88G27283' => 'sas', 'SGA_v2.0_scaffold88G27285' => 'sas', 'SGA_v2.0_scaffold88G27331' => 'sas', 'SHI09937' => 'shi', 'SMO119G0302' => 'smo', 'SMO137G0231' => 'smo', 'SMO367G1151' => 'smo', 'Solyc02g082000.3' => 'sly', 'Solyc06g031670.3' => 'sly', 'Solyc06g053810.3' => 'sly', 'Solyc07g025457.1' => 'sly', 'Solyc08g059740.1' => 'sly', 'Solyc08g059750.3' => 'sly', 'Solyc09g083370.3' => 'sly', 'Solyc12g038950.3' => 'sly', 'Sopen02g026630' => 'spe', 'Sopen06g018930' => 'spe', 'Sopen06g018940' => 'spe', 'Sopen08g009460' => 'spe', 'Sopen09g032290' => 'spe', 'Sp1g03080' => 'spa', 'Sp1g03090' => 'spa', 'Sp1g05480' => 'spa', 'Sp2g07860' => 'spa', 'Sp2g08430' => 'spa', 'Sp2g08440' => 'spa', 'Sp2g26200' => 'spa', 'Sp4g13170' => 'spa', 'Sp6g33840' => 'spa', 'SpUn1204_0010' => 'spa', 'TAR365G0908' => 'tar', 'TAR381G1270' => 'tar', 'TAR381G1651' => 'tar', 'TAR625G1131' => 'tar', 'TAR633G0962' => 'tar', 'TAR633G1729' => 'tar', 'TAR633G1864' => 'tar', 'TAR636G0221' => 'tar', 'TAR636G0314' => 'tar', 'TAR636G3202' => 'tar', 'THA.LOC104800805' => 'tha', 'THA.LOC104801096' => 'tha', 'THA.LOC104801555' => 'tha', 'THA.LOC104808491' => 'tha', 'THA.LOC104808595' => 'tha', 'THA.LOC104815985' => 'tha', 'THA.LOC104822250' => 'tha', 'THA.LOC104826071' => 'tha', 'Thecc.01G265200' => 'tca', 'Thecc.01G265300' => 'tca', 'Thecc.01G265700' => 'tca', 'Thecc.03G109100' => 'tca', 'Thecc.04G245900' => 'tca', 'Thecc.04G246000' => 'tca', 'Thhalv10003334m.g' => 'esa', 'Thhalv10005508m.g' => 'esa', 'Thhalv10005643m.g' => 'esa', 'Thhalv10007316m.g' => 'esa', 'Thhalv10009006m.g' => 'esa', 'Thhalv10009309m.g' => 'esa', 'Thhalv10014917m.g' => 'esa', 'Thhalv10014919m.g' => 'esa', 'Thhalv10015393m.g' => 'esa', 'Thhalv10016515m.g' => 'esa', 'Thhalv10029242m.g' => 'esa', 'TPR.G16654' => 'tpr', 'TPR.G20589' => 'tpr', 'TPR.G23029' => 'tpr', 'TPR.G27731' => 'tpr', 'TPR.G28889' => 'tpr', 'TPR.G28899' => 'tpr', 'TPR.G30846' => 'tpr', 'TPR.G5452' => 'tpr', 'TPR.G5713' => 'tpr', 'TPR.G9046' => 'tpr', 'TPR.G9061' => 'tpr', 'TWI09G1075' => 'twi', 'TWI12G0806' => 'twi', 'TWI18G0108' => 'twi', 'TWI53G1361' => 'twi', 'TWI73G0185' => 'twi', 'TWI73G0427' => 'twi', 'unitig_37.g12001' => 'ugi', 'unitig_747.g21660' => 'ugi', 'unitig_748.g7232' => 'ugi', 'unitig_748.g7315' => 'ugi', 'unitig_85.g27262' => 'ugi', 'unitig_92.g28220' => 'ugi', 'vmacro02632' => 'vma', 'vmacro08410' => 'vma', 'vmacro08411' => 'vma', 'vmacro15407' => 'vma', 'VMungo0251G3619' => 'vmu', 'VMungo0720G1204' => 'vmu', 'VMungo0720G1918' => 'vmu', 'VMungo0720G2387' => 'vmu', 'VMungo0720G2961' => 'vmu', 'VMungo1215G2154' => 'vmu', 'VMungo1383G2411' => 'vmu', 'Zm00001eb051130' => 'zma', 'Zm00001eb116830' => 'zma', 'Zm00001eb116850' => 'zma', 'Zm00001eb151740' => 'zma', 'Zm00001eb292360' => 'zma', 'Zm00001eb301640' => 'zma' ), 'gf_id' => 'HOM05D000856', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000856' ), 'data_identifier' => 'HOM05D000856', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000856', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p00010' => 'bna', 'A03p04160' => 'bna', 'A03p17160' => 'bna', 'A04p23370' => 'bna', 'A05p14860' => 'bna', 'A08p37020' => 'bna', 'A09p08050' => 'bna', 'A09p66800' => 'bna', 'A09p67940' => 'bna', 'A10p02680' => 'bna', 'A10p05320' => 'bna', 'Aa31LG1G20560' => 'aar', 'Aa31LG1G20610' => 'aar', 'Aa31LG1G7810' => 'aar', 'Aa31LG5G3590' => 'aar', 'Aa31LG5G6140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3819' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4683' => 'aag', 'Actinidia04480' => 'ach', 'Actinidia05466' => 'ach', 'Actinidia08445' => 'ach', 'Actinidia21170' => 'ach', 'Actinidia24812' => 'ach', 'Actinidia24951' => 'ach', 'Actinidia40088' => 'ach', 'Ah.02g111660' => 'amhyb', 'Ah.11g048900' => 'amhyb', 'Ah.11g049910' => 'amhyb', 'AL1G13870' => 'aly', 'AL1G13880' => 'aly', 'AL1G16760' => 'aly', 'AL390U10020' => 'aly', 'AL4G25520' => 'aly', 'AL6G19890' => 'aly', 'AL6G19900' => 'aly', 'AL6G19910' => 'aly', 'AL8G40100' => 'aly', 'Aqoxy2G03562' => 'aox', 'Aqoxy5G00316' => 'aox', 'Aqoxy5G00926' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1628KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1H403S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2FU6SJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.882I6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8YRY2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YN1SN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AF70II' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZA8L1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F916KL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHRD8H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KTZ8QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S22EMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8M29T' => 'arhy', 'AT1G04270' => 'ath', 'AT1G04280' => 'ath', 'AT1G06750' => 'ath', 'AT1G33850' => 'ath', 'AT2G30630' => 'ath', 'AT5G09490' => 'ath', 'AT5G09500' => 'ath', 'AT5G09510' => 'ath', 'AT5G43640' => 'ath', 'AT5G63070' => 'ath', 'ATR0605G315' => 'atr', 'Atru.chr11.175' => 'acertr', 'Atru.chr11.653' => 'acertr', 'Atru.chr3.1616' => 'acertr', 'Atru.chr4.2230' => 'acertr', 'Atru.chr4.2232' => 'acertr', 'Atru.chr5.1598' => 'acertr', 'Atru.chr5.1600' => 'acertr', 'Atru.chr5.2188' => 'acertr', 'AUR62008326' => 'cqu', 'AUR62011922' => 'cqu', 'AUR62011924' => 'cqu', 'AUR62021771' => 'cqu', 'AUR62032237' => 'cqu', 'AUR62032240' => 'cqu', 'BcaB01g05572' => 'bca', 'BcaB02g10337' => 'bca', 'BcaB04g19944' => 'bca', 'BcaB05g21548' => 'bca', 'BcaB05g21549' => 'bca', 'BcaB05g23227' => 'bca', 'BcaB06g26256' => 'bca', 'BcaB06g26257' => 'bca', 'BcaB06g28379' => 'bca', 'BcaC02g11159' => 'bca', 'BcaC03g13258' => 'bca', 'BcaC03g13259' => 'bca', 'BcaC05g24456' => 'bca', 'BcaC05g24457' => 'bca', 'BcaC07g36922' => 'bca', 'BcaC07g36923' => 'bca', 'BcaC07g42050' => 'bca', 'BcaC07g42176' => 'bca', 'BcaC07g42195' => 'bca', 'BcaC07g42196' => 'bca', 'BcaNung06674' => 'bca', 'BolC2t06351H' => 'bol', 'BolC2t06352H' => 'bol', 'BolC3t12993H' => 'bol', 'BolC4t23525H' => 'bol', 'BolC4t27475H' => 'bol', 'BolC5t29025H' => 'bol', 'BolC5t29026H' => 'bol', 'BolC8t46898H' => 'bol', 'BolC8t46899H' => 'bol', 'BolC8t52630H' => 'bol', 'BolC8t52765H' => 'bol', 'BolC9t53824H' => 'bol', 'BraA03t09760Z' => 'bra', 'BraA03t10990Z' => 'bra', 'BraA05t20413Z' => 'bra', 'BraA08t35602Z' => 'bra', 'BraA09t36458Z' => 'bra', 'BraA09t42018Z' => 'bra', 'BraA09t42129Z' => 'bra', 'BraA10t42536Z' => 'bra', 'BraA10t42537Z' => 'bra', 'C01p10690' => 'bna', 'C02p03890' => 'bna', 'C02p03900' => 'bna', 'C03p04620' => 'bna', 'C04p19870' => 'bna', 'C04p59670' => 'bna', 'C05p02460' => 'bna', 'C05p02470' => 'bna', 'C08p00980' => 'bna', 'C08p00990' => 'bna', 'C08p51030' => 'bna', 'C08p52360' => 'bna', 'C09p09120' => 'bna', 'CAN.G19.15' => 'can', 'CAN.G251.10' => 'can', 'CAN.G251.9' => 'can', 'CAN.G398.24' => 'can', 'CAN.G410.32' => 'can', 'CAN.G881.2' => 'can', 'CANSAT01G3025' => 'cansat', 'CANSAT78G1211' => 'cansat', 'CANSAT78G1218' => 'cansat', 'CANSAT78G1521' => 'cansat', 'CANSAT78G1670' => 'cansat', 'CARHR003600' => 'chi', 'CARHR003610' => 'chi', 'CARHR006290' => 'chi', 'CARHR006430' => 'chi', 'CARHR124110' => 'chi', 'CARHR203870' => 'chi', 'CARHR203880' => 'chi', 'CARHR203890' => 'chi', 'CARHR276880' => 'chi', 'Carub.0001s0346' => 'cru', 'Carub.0001s0347' => 'cru', 'Carub.0001s0607' => 'cru', 'Carub.0003s2768' => 'cru', 'Carub.0003s2769' => 'cru', 'Carub.0004s1178' => 'cru', 'Carub.0006s0806' => 'cru', 'Carub.0006s0807' => 'cru', 'Carub.0006s0808' => 'cru', 'Carub.0008s0501' => 'cru', 'Carub.0008s2379' => 'cru', 'Ca_08655_v3' => 'car', 'Ca_08922_v3' => 'car', 'Ca_08923_v3' => 'car', 'Ca_09119_v3' => 'car', 'Ca_09703_v3' => 'car', 'Ca_09705_v3' => 'car', 'Ca_09835_v3' => 'car', 'Ca_26403_v3' => 'car', 'Ca_30719_v3' => 'car', 'CBR_g17958' => 'cbr', 'CBR_g40516' => 'cbr', 'Cc00_g05350' => 'ccan', 'Cc01_g18690' => 'ccan', 'Cc03_g04830' => 'ccan', 'Cc03_g04850' => 'ccan', 'CDE02G4469' => 'cde', 'CDE06G0883' => 'cde', 'CDE06G1295' => 'cde', 'CDE06G1390' => 'cde', 'CDE07G0584' => 'cde', 'CDE07G1084' => 'cde', 'CDE08G1259' => 'cde', 'Cfa002341' => 'cfa', 'Cfa024337' => 'cfa', 'Ciclev10004749m.g' => 'ccl', 'Ciclev10006127m.g' => 'ccl', 'Ciclev10019720m.g' => 'ccl', 'Ciclev10022652m.g' => 'ccl', 'CiPaw.01G190400' => 'cil', 'CiPaw.01G190500' => 'cil', 'CiPaw.02G116400' => 'cil', 'CiPaw.02G116500' => 'cil', 'CiPaw.04G183000' => 'cil', 'CiPaw.04G183300' => 'cil', 'ClCG05G004610' => 'cla', 'ClCG05G004620' => 'cla', 'ClCG06G006730' => 'cla', 'ClCG06G006740' => 'cla', 'ClCG11G003690' => 'cla', 'COL.COLO4_08276' => 'col', 'COL.COLO4_08277' => 'col', 'COL.COLO4_15787' => 'col', 'COL.COLO4_15789' => 'col', 'Cpa.g.c44815' => 'cpa', 'Cpa.g.sc52.144' => 'cpa', 'Cpa.g.sc58.46' => 'cpa', 'Cpa.g.sc58.47' => 'cpa', 'Cre08.g360900' => 'cre', 'CsaV3_2G013030' => 'csa', 'CsaV3_2G013050' => 'csa', 'CsaV3_2G015620' => 'csa', 'CsaV3_3G012590' => 'csa', 'CsaV3_3G012600' => 'csa', 'CSS0001641' => 'camsi', 'CSS0008310' => 'camsi', 'CSS0013011' => 'camsi', 'CSS0017147' => 'camsi', 'CSS0022970' => 'camsi', 'CSS0025655' => 'camsi', 'CSS0028665' => 'camsi', 'CSS0029117' => 'camsi', 'CSS0032024' => 'camsi', 'CSS0039681' => 'camsi', 'CSS0046516' => 'camsi', 'CSS0050307' => 'camsi', 'DCAR_005871' => 'dca', 'DCAR_007342' => 'dca', 'DCAR_024228' => 'dca', 'DCAR_027277' => 'dca', 'DCAR_030718' => 'dca', 'Dinv20287' => 'din', 'Dinv22461' => 'din', 'Dinv22464' => 'din', 'Dinv29912' => 'din', 'Dinv29913' => 'din', 'Dinv34580' => 'din', 'Dinv34582' => 'din', 'Dinv44632' => 'din', 'Duzib052G0266' => 'dzi', 'Duzib133G0907' => 'dzi', 'Duzib133G1034' => 'dzi', 'Duzib138G0207' => 'dzi', 'Duzib138G0491' => 'dzi', 'Duzib151G0812' => 'dzi', 'Duzib151G1166' => 'dzi', 'Duzib168G0192' => 'dzi', 'Duzib211G0077' => 'dzi', 'Duzib212G0429' => 'dzi', 'Duzib212G0472' => 'dzi', 'ECA233G2617' => 'eca', 'ECA236G4188' => 'eca', 'ECA240G0936' => 'eca', 'ECA240G1129' => 'eca', 'ECA247G0623' => 'eca', 'EL10Ac5g10451' => 'bvu', 'EL10Ac5g10453' => 'bvu', 'EL10Ac5g10894' => 'bvu', 'Eucgr.H00192' => 'egr', 'Eucgr.H00193' => 'egr', 'Eucgr.H00194' => 'egr', 'Eucgr.J01562' => 'egr', 'Eucgr.K03301' => 'egr', 'FAN02G0632' => 'fan', 'FAN05G5378' => 'fan', 'FAN09G3247' => 'fan', 'FAN12G0435' => 'fan', 'FAN12G2426' => 'fan', 'FAN14G1707' => 'fan', 'FAN14G4725' => 'fan', 'FAN15G2071' => 'fan', 'FAN17G3065' => 'fan', 'FAN19G1376' => 'fan', 'FAN20G0354' => 'fan', 'FAN20G2429' => 'fan', 'FAN20G2658' => 'fan', 'FAN24G2343' => 'fan', 'FAN27G2362' => 'fan', 'FAN28G1765' => 'fan', 'FvH4_1g16020' => 'fve', 'FvH4_2g04890' => 'fve', 'FvH4_2g22270' => 'fve', 'FvH4_4g02630' => 'fve', 'FvH4_4g02640' => 'fve', 'FvH4_6g02650' => 'fve', 'Glyma.02G140600' => 'gma', 'Glyma.03G159900' => 'gma', 'Glyma.05G234800' => 'gma', 'Glyma.07G269600' => 'gma', 'Glyma.08G042300' => 'gma', 'Glyma.10G033500' => 'gma', 'Glyma.10G185200' => 'gma', 'Glyma.17G004300' => 'gma', 'Glyma.19G161900' => 'gma', 'Glyma.20G205100' => 'gma', 'Glyma.20G205200' => 'gma', 'Gohir.A01G139101' => 'ghi', 'Gohir.A02G035600' => 'ghi', 'Gohir.A02G117901' => 'ghi', 'Gohir.A07G210100' => 'ghi', 'Gohir.A07G210200' => 'ghi', 'Gohir.A08G061100' => 'ghi', 'Gohir.A09G223000' => 'ghi', 'Gohir.A09G223100' => 'ghi', 'Gohir.A10G113900' => 'ghi', 'Gohir.A10G114000' => 'ghi', 'Gohir.D02G042300' => 'ghi', 'Gohir.D07G216100' => 'ghi', 'Gohir.D07G216200' => 'ghi', 'Gohir.D08G070400' => 'ghi', 'Gohir.D09G225000' => 'ghi', 'Gohir.D09G225100' => 'ghi', 'Gohir.D10G152300' => 'ghi', 'Gohir.D10G153200' => 'ghi', 'Gohir.D11G133701' => 'ghi', 'Gorai.004G074100' => 'gra', 'Gorai.005G046800' => 'gra', 'Gorai.006G246500' => 'gra', 'Gorai.006G246600' => 'gra', 'Gorai.007G142900' => 'gra', 'Gorai.011G171000' => 'gra', 'Gorai.011G171100' => 'gra', 'Gorai.013G104300' => 'gra', 'Gorai.013G104400' => 'gra', 'GSVIVG01000754001' => 'vvi', 'GSVIVG01000756001' => 'vvi', 'GSVIVG01010903001' => 'vvi', 'GSVIVG01017623001' => 'vvi', 'GSVIVG01018113001' => 'vvi', 'GSVIVG01018116001' => 'vvi', 'GSVIVG01018118001' => 'vvi', 'HanXRQChr03g0076211' => 'han', 'HanXRQChr03g0092431' => 'han', 'HanXRQChr03g0092441' => 'han', 'HanXRQChr03g0092591' => 'han', 'HanXRQChr03g0092671' => 'han', 'HanXRQChr03g0092681' => 'han', 'HanXRQChr03g0092691' => 'han', 'HanXRQChr03g0092701' => 'han', 'HanXRQChr03g0092721' => 'han', 'HanXRQChr03g0092731' => 'han', 'HanXRQChr04g0113681' => 'han', 'HanXRQChr10g0281371' => 'han', 'HanXRQChr11g0337141' => 'han', 'HanXRQChr13g0424521' => 'han', 'HanXRQChr13g0424531' => 'han', 'HanXRQChr13g0424541' => 'han', 'HanXRQChr16g0498221' => 'han', 'Haze_04377' => 'cav', 'Haze_11298' => 'cav', 'Haze_24547' => 'cav', 'Haze_24550' => 'cav', 'Haze_26587' => 'cav', 'Hma1.2p1_0650F.1_g195410' => 'hma', 'Hma1.2p1_0893F.1_g233470' => 'hma', 'HPP92_006508' => 'vpl', 'HPP92_024780' => 'vpl', 'Hund02688' => 'sun', 'Hund09380' => 'sun', 'Hund09381' => 'sun', 'Hund09832' => 'sun', 'Hund09833' => 'sun', 'Hund11351' => 'sun', 'Hund11513' => 'sun', 'Lalb_Chr06g0162591' => 'lal', 'Lalb_Chr06g0162601' => 'lal', 'Lalb_Chr06g0169321' => 'lal', 'Lalb_Chr09g0330951' => 'lal', 'Lalb_Chr16g0387631' => 'lal', 'Lalb_Chr21g0306241' => 'lal', 'Lalb_Chr25g0290051' => 'lal', 'Lalb_Chr25g0290061' => 'lal', 'Lalb_Chr25g0290071' => 'lal', 'Lj1g0003876' => 'lja', 'Lj1P1207T36' => 'lonja', 'Lj2C1156G12' => 'lonja', 'Lj3A793G39' => 'lonja', 'Lj3C580G2' => 'lonja', 'Lj3C780G2' => 'lonja', 'Lj3C780T4' => 'lonja', 'Lj3C793G9' => 'lonja', 'Lj4g0012960' => 'lja', 'Lj5g0021252' => 'lja', 'Lj5g0021484' => 'lja', 'Lj5g0024528' => 'lja', 'Lj6A399T12' => 'lonja', 'Lj6A656G65' => 'lonja', 'Lsat_1_v5_gn_3_125500' => 'lsa', 'Lsat_1_v5_gn_3_125540' => 'lsa', 'Lsat_1_v5_gn_5_72701' => 'lsa', 'Lsat_1_v5_gn_8_91560' => 'lsa', 'Lsat_1_v5_gn_9_9640' => 'lsa', 'Manes.01G200600' => 'mes', 'Manes.01G200700' => 'mes', 'Manes.03G168900' => 'mes', 'Manes.03G169000' => 'mes', 'Manes.05G085801' => 'mes', 'Manes.05G086200' => 'mes', 'Manes.15G036700' => 'mes', 'Manes.15G036900' => 'mes', 'Mapoly0004s0172' => 'mpo', 'Mapoly0023s0001' => 'mpo', 'Mapoly0142s0012' => 'mpo', 'MBI01_g32854_MAGBIO' => 'mbi', 'MBI11_g24427_MAGBIO' => 'mbi', 'MBI11_g47319_MAGBIO' => 'mbi', 'MCO01G433' => 'mco', 'MD00G1187800' => 'mdo', 'MD04G1226500' => 'mdo', 'MD05G1203900' => 'mdo', 'MD10G1191100' => 'mdo', 'MD12G1243500' => 'mdo', 'MD13G1207000' => 'mdo', 'MD13G1207100' => 'mdo', 'MD16G1208600' => 'mdo', 'Medtr1g050352' => 'mtr', 'Medtr1g070385' => 'mtr', 'Medtr1g070450' => 'mtr', 'Medtr1g075200' => 'mtr', 'Medtr1g075250' => 'mtr', 'Medtr1g075260' => 'mtr', 'Medtr1g475250' => 'mtr', 'Medtr4g075450' => 'mtr', 'Medtr7g096300' => 'mtr', 'Medtr8g105110' => 'mtr', 'MELO3C006470.2' => 'cme', 'MELO3C006471.2' => 'cme', 'MELO3C020772.2' => 'cme', 'MELO3C026780.2' => 'cme', 'MELO3C026781.2' => 'cme', 'Migut.D00390' => 'egut', 'Migut.G00435' => 'egut', 'Migut.G00436' => 'egut', 'Migut.G00718' => 'egut', 'MSTRG.21891' => 'ama', 'MSTRG.26910' => 'ama', 'MSTRG.4099' => 'ama', 'MSTRG.9925' => 'ama', 'Nitab4.5_0000165g0010' => 'nta', 'Nitab4.5_0000209g0180' => 'nta', 'Nitab4.5_0000244g0440' => 'nta', 'Nitab4.5_0000525g0220' => 'nta', 'Nitab4.5_0001597g0020' => 'nta', 'Nitab4.5_0001878g0040' => 'nta', 'Nitab4.5_0001878g0060' => 'nta', 'Nitab4.5_0002838g0100' => 'nta', 'Nitab4.5_0002838g0120' => 'nta', 'Nitab4.5_0004798g0030' => 'nta', 'Nitab4.5_0005420g0010' => 'nta', 'Nitab4.5_0005507g0010' => 'nta', 'Nitab4.5_0005574g0020' => 'nta', 'Nitab4.5_0005838g0010' => 'nta', 'Nitab4.5_0010580g0020' => 'nta', 'Nn1g02599' => 'nnu', 'Nn1g02608' => 'nnu', 'Nn3g17742' => 'nnu', 'Nn3g19534' => 'nnu', 'Nn3g19535' => 'nnu', 'Oeu008790.1' => 'oeu', 'Oeu008792.1' => 'oeu', 'Oeu032590.1' => 'oeu', 'Oeu035349.1' => 'oeu', 'Oeu049791.1' => 'oeu', 'Os01g0774500' => 'osa', 'Os03g0628800' => 'osa', 'Os03g0798600' => 'osa', 'Os05g0508800' => 'osa', 'Peaxi162Scf00036g02018' => 'pax', 'Peaxi162Scf00578g00032' => 'pax', 'Peaxi162Scf00578g00317' => 'pax', 'Peaxi162Scf00785g00114' => 'pax', 'Peaxi162Scf00813g00119' => 'pax', 'Peaxi162Scf00906g00227' => 'pax', 'PGR004G0875' => 'pgr', 'PGR004G2424' => 'pgr', 'PGR031G1239' => 'pgr', 'PGR031G2474' => 'pgr', 'PGR044G0423' => 'pgr', 'PGSC0003DMG400001128' => 'stu', 'PGSC0003DMG400007336' => 'stu', 'PGSC0003DMG400016318' => 'stu', 'PGSC0003DMG400016319' => 'stu', 'PGSC0003DMG400018074' => 'stu', 'Phvul.001G157700' => 'pvu', 'Phvul.002G148550' => 'pvu', 'Phvul.002G320200' => 'pvu', 'Phvul.003G089200' => 'pvu', 'Phvul.007G126000' => 'pvu', 'Phvul.007G126100' => 'pvu', 'Phvul.007G178000' => 'pvu', 'Phvul.007G178200' => 'pvu', 'Potri.002G043000' => 'ptr', 'Potri.002G043200' => 'ptr', 'Potri.003G123750' => 'ptr', 'Potri.005G055401' => 'ptr', 'Potri.005G219700' => 'ptr', 'Potri.005G220000' => 'ptr', 'Potri.008G161901' => 'ptr', 'Potri.008G162000' => 'ptr', 'Potri.008G162400' => 'ptr', 'Potri.010G076900' => 'ptr', 'Pp3c12_9180' => 'ppa', 'Pp3c13_19770' => 'ppa', 'Pp3c14_22950' => 'ppa', 'Pp3c16_12160' => 'ppa', 'Pp3c27_7820' => 'ppa', 'Pp3c2_3490' => 'ppa', 'Pp3c3_23700' => 'ppa', 'Pp3c3_36520' => 'ppa', 'Pp3c4_15250' => 'ppa', 'PRCOL_00007002' => 'pco', 'Prupe.1G030600' => 'ppe', 'Prupe.1G030700' => 'ppe', 'Prupe.6G345200' => 'ppe', 'Prupe.8G230300' => 'ppe', 'Prupe.8G230500' => 'ppe', 'Psat3g059600' => 'psa', 'Psat5g200920' => 'psa', 'Psat6g056440' => 'psa', 'Psat6g057360' => 'psa', 'Psat6g134120' => 'psa', 'Psat6g134160' => 'psa', 'Psat7g008640' => 'psa', 'Psat7g185240' => 'psa', 'PSO017G1330' => 'pso', 'PSO063G6097' => 'pso', 'PSO170G0835' => 'pso', 'PSO170G2499' => 'pso', 'PSO210G5058' => 'pso', 'PSO210G6154' => 'pso', 'PSO585G0031' => 'pso', 'PSO832G0264' => 'pso', 'PSO832G4288' => 'pso', 'QL03p027355' => 'qlo', 'QL03p027430' => 'qlo', 'QL04p081380' => 'qlo', 'QL06p015642' => 'qlo', 'QL06p015650' => 'qlo', 'QL06p015686' => 'qlo', 'QL12p042927' => 'qlo', 'QL93p1863_0035' => 'qlo', 'RcHm_v2.0_Chr3g0450581' => 'rch', 'RcHm_v2.0_Chr4g0390371' => 'rch', 'RcHm_v2.0_Chr4g0390381' => 'rch', 'RcHm_v2.0_Chr4g0390491' => 'rch', 'RcHm_v2.0_Chr4g0390501' => 'rch', 'RcHm_v2.0_Chr6g0289231' => 'rch', 'Rhsim04G0190400' => 'rsi', 'Rhsim04G0190500' => 'rsi', 'Rhsim04G0190600' => 'rsi', 'Rhsim13G0031400' => 'rsi', 'Rhsim13G0165600' => 'rsi', 'RhsimUnG0114600' => 'rsi', 'RhsimUnG0114700' => 'rsi', 'Sabra02G0034800' => 'sbr', 'Sabra02G0035100' => 'sbr', 'Sabra05G0168600' => 'sbr', 'Sabra05G0168800' => 'sbr', 'Sabra08G0123700' => 'sbr', 'Sabra10G0031900' => 'sbr', 'Sabra13G0039000' => 'sbr', 'SalBow2G0782' => 'sbo', 'SalBow2G1403' => 'sbo', 'SalBow4G0074' => 'sbo', 'SalBow4G2635' => 'sbo', 'SalBow5G3010' => 'sbo', 'Sc05g0000870' => 'sci', 'Sc05g0000890' => 'sci', 'Sc13g0005000' => 'sci', 'Sc13g0005030' => 'sci', 'Sc19g0003790' => 'sci', 'Sc19g0003800' => 'sci', 'Sed0003467' => 'sed', 'Sed0009355' => 'sed', 'Sed0009894' => 'sed', 'Sed0011972' => 'sed', 'Sed0021483' => 'sed', 'Sed0021750' => 'sed', 'Sed0026279' => 'sed', 'SEGI_05312' => 'sgi', 'SEGI_10112' => 'sgi', 'SEGI_15835' => 'sgi', 'SEGI_30386' => 'sgi', 'SEGI_34122' => 'sgi', 'SEGI_35063' => 'sgi', 'SGA_v2.0_scaffold101G29794' => 'sas', 'SGA_v2.0_scaffold1G00573' => 'sas', 'SGA_v2.0_scaffold79G25637' => 'sas', 'SGA_v2.0_scaffold88G27283' => 'sas', 'SGA_v2.0_scaffold88G27285' => 'sas', 'SGA_v2.0_scaffold88G27331' => 'sas', 'SHI09937' => 'shi', 'SMO119G0302' => 'smo', 'SMO137G0231' => 'smo', 'SMO367G1151' => 'smo', 'Solyc02g082000.3' => 'sly', 'Solyc06g031670.3' => 'sly', 'Solyc06g053810.3' => 'sly', 'Solyc07g025457.1' => 'sly', 'Solyc08g059740.1' => 'sly', 'Solyc08g059750.3' => 'sly', 'Solyc09g083370.3' => 'sly', 'Solyc12g038950.3' => 'sly', 'Sopen02g026630' => 'spe', 'Sopen06g018930' => 'spe', 'Sopen06g018940' => 'spe', 'Sopen08g009460' => 'spe', 'Sopen09g032290' => 'spe', 'Sp1g03080' => 'spa', 'Sp1g03090' => 'spa', 'Sp1g05480' => 'spa', 'Sp2g07860' => 'spa', 'Sp2g08430' => 'spa', 'Sp2g08440' => 'spa', 'Sp2g26200' => 'spa', 'Sp4g13170' => 'spa', 'Sp6g33840' => 'spa', 'SpUn1204_0010' => 'spa', 'TAR365G0908' => 'tar', 'TAR381G1270' => 'tar', 'TAR381G1651' => 'tar', 'TAR625G1131' => 'tar', 'TAR633G0962' => 'tar', 'TAR633G1729' => 'tar', 'TAR633G1864' => 'tar', 'TAR636G0221' => 'tar', 'TAR636G0314' => 'tar', 'TAR636G3202' => 'tar', 'THA.LOC104800805' => 'tha', 'THA.LOC104801096' => 'tha', 'THA.LOC104801555' => 'tha', 'THA.LOC104808491' => 'tha', 'THA.LOC104808595' => 'tha', 'THA.LOC104815985' => 'tha', 'THA.LOC104822250' => 'tha', 'THA.LOC104826071' => 'tha', 'Thecc.01G265200' => 'tca', 'Thecc.01G265300' => 'tca', 'Thecc.01G265700' => 'tca', 'Thecc.03G109100' => 'tca', 'Thecc.04G245900' => 'tca', 'Thecc.04G246000' => 'tca', 'Thhalv10003334m.g' => 'esa', 'Thhalv10005508m.g' => 'esa', 'Thhalv10005643m.g' => 'esa', 'Thhalv10007316m.g' => 'esa', 'Thhalv10009006m.g' => 'esa', 'Thhalv10009309m.g' => 'esa', 'Thhalv10014917m.g' => 'esa', 'Thhalv10014919m.g' => 'esa', 'Thhalv10015393m.g' => 'esa', 'Thhalv10016515m.g' => 'esa', 'Thhalv10029242m.g' => 'esa', 'TPR.G16654' => 'tpr', 'TPR.G20589' => 'tpr', 'TPR.G23029' => 'tpr', 'TPR.G27731' => 'tpr', 'TPR.G28889' => 'tpr', 'TPR.G28899' => 'tpr', 'TPR.G30846' => 'tpr', 'TPR.G5452' => 'tpr', 'TPR.G5713' => 'tpr', 'TPR.G9046' => 'tpr', 'TPR.G9061' => 'tpr', 'TWI09G1075' => 'twi', 'TWI12G0806' => 'twi', 'TWI18G0108' => 'twi', 'TWI53G1361' => 'twi', 'TWI73G0185' => 'twi', 'TWI73G0427' => 'twi', 'unitig_37.g12001' => 'ugi', 'unitig_747.g21660' => 'ugi', 'unitig_748.g7232' => 'ugi', 'unitig_748.g7315' => 'ugi', 'unitig_85.g27262' => 'ugi', 'unitig_92.g28220' => 'ugi', 'vmacro02632' => 'vma', 'vmacro08410' => 'vma', 'vmacro08411' => 'vma', 'vmacro15407' => 'vma', 'VMungo0251G3619' => 'vmu', 'VMungo0720G1204' => 'vmu', 'VMungo0720G1918' => 'vmu', 'VMungo0720G2387' => 'vmu', 'VMungo0720G2961' => 'vmu', 'VMungo1215G2154' => 'vmu', 'VMungo1383G2411' => 'vmu', 'Zm00001eb051130' => 'zma', 'Zm00001eb116830' => 'zma', 'Zm00001eb116850' => 'zma', 'Zm00001eb151740' => 'zma', 'Zm00001eb292360' => 'zma', 'Zm00001eb301640' => 'zma' ) $gf_id = 'HOM05D000856' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000856' ) $data_identifier = 'HOM05D000856' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 13, 'ath' => (int) 10, 'atr' => (int) 1, 'acertr' => (int) 8, 'cqu' => (int) 6, 'bca' => (int) 21, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 11, 'car' => (int) 9, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 8, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 5, 'fan' => (int) 16, 'fve' => (int) 6, 'gma' => (int) 11, 'ghi' => (int) 19, 'gra' => (int) 9, 'vvi' => (int) 7, 'han' => (int) 17, 'cav' => (int) 5, 'hma' => (int) 2, 'vpl' => (int) 2, 'sun' => (int) 7, 'lal' => (int) 9, 'lja' => (int) 5, 'lonja' => (int) 9, 'lsa' => (int) 5, 'mes' => (int) 8, 'mpo' => (int) 3, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 10, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 15, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 9, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 9, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 6, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 5, 'spa' => (int) 10, 'tar' => (int) 10, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 11, 'tpr' => (int) 11, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 4, 'vmu' => (int) 7, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb301640' $species_info = array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ) $local_species = 'sci' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000856', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p00010' => 'bna', 'A03p04160' => 'bna', 'A03p17160' => 'bna', 'A04p23370' => 'bna', 'A05p14860' => 'bna', 'A08p37020' => 'bna', 'A09p08050' => 'bna', 'A09p66800' => 'bna', 'A09p67940' => 'bna', 'A10p02680' => 'bna', 'A10p05320' => 'bna', 'Aa31LG1G20560' => 'aar', 'Aa31LG1G20610' => 'aar', 'Aa31LG1G7810' => 'aar', 'Aa31LG5G3590' => 'aar', 'Aa31LG5G6140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3819' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4683' => 'aag', 'Actinidia04480' => 'ach', 'Actinidia05466' => 'ach', 'Actinidia08445' => 'ach', 'Actinidia21170' => 'ach', 'Actinidia24812' => 'ach', 'Actinidia24951' => 'ach', 'Actinidia40088' => 'ach', 'Ah.02g111660' => 'amhyb', 'Ah.11g048900' => 'amhyb', 'Ah.11g049910' => 'amhyb', 'AL1G13870' => 'aly', 'AL1G13880' => 'aly', 'AL1G16760' => 'aly', 'AL390U10020' => 'aly', 'AL4G25520' => 'aly', 'AL6G19890' => 'aly', 'AL6G19900' => 'aly', 'AL6G19910' => 'aly', 'AL8G40100' => 'aly', 'Aqoxy2G03562' => 'aox', 'Aqoxy5G00316' => 'aox', 'Aqoxy5G00926' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1628KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1H403S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2FU6SJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.882I6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8YRY2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YN1SN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AF70II' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZA8L1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F916KL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHRD8H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KTZ8QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S22EMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8M29T' => 'arhy', 'AT1G04270' => 'ath', 'AT1G04280' => 'ath', 'AT1G06750' => 'ath', 'AT1G33850' => 'ath', 'AT2G30630' => 'ath', 'AT5G09490' => 'ath', 'AT5G09500' => 'ath', 'AT5G09510' => 'ath', 'AT5G43640' => 'ath', 'AT5G63070' => 'ath', 'ATR0605G315' => 'atr', 'Atru.chr11.175' => 'acertr', 'Atru.chr11.653' => 'acertr', 'Atru.chr3.1616' => 'acertr', 'Atru.chr4.2230' => 'acertr', 'Atru.chr4.2232' => 'acertr', 'Atru.chr5.1598' => 'acertr', 'Atru.chr5.1600' => 'acertr', 'Atru.chr5.2188' => 'acertr', 'AUR62008326' => 'cqu', 'AUR62011922' => 'cqu', 'AUR62011924' => 'cqu', 'AUR62021771' => 'cqu', 'AUR62032237' => 'cqu', 'AUR62032240' => 'cqu', 'BcaB01g05572' => 'bca', 'BcaB02g10337' => 'bca', 'BcaB04g19944' => 'bca', 'BcaB05g21548' => 'bca', 'BcaB05g21549' => 'bca', 'BcaB05g23227' => 'bca', 'BcaB06g26256' => 'bca', 'BcaB06g26257' => 'bca', 'BcaB06g28379' => 'bca', 'BcaC02g11159' => 'bca', 'BcaC03g13258' => 'bca', 'BcaC03g13259' => 'bca', 'BcaC05g24456' => 'bca', 'BcaC05g24457' => 'bca', 'BcaC07g36922' => 'bca', 'BcaC07g36923' => 'bca', 'BcaC07g42050' => 'bca', 'BcaC07g42176' => 'bca', 'BcaC07g42195' => 'bca', 'BcaC07g42196' => 'bca', 'BcaNung06674' => 'bca', 'BolC2t06351H' => 'bol', 'BolC2t06352H' => 'bol', 'BolC3t12993H' => 'bol', 'BolC4t23525H' => 'bol', 'BolC4t27475H' => 'bol', 'BolC5t29025H' => 'bol', 'BolC5t29026H' => 'bol', 'BolC8t46898H' => 'bol', 'BolC8t46899H' => 'bol', 'BolC8t52630H' => 'bol', 'BolC8t52765H' => 'bol', 'BolC9t53824H' => 'bol', 'BraA03t09760Z' => 'bra', 'BraA03t10990Z' => 'bra', 'BraA05t20413Z' => 'bra', 'BraA08t35602Z' => 'bra', 'BraA09t36458Z' => 'bra', 'BraA09t42018Z' => 'bra', 'BraA09t42129Z' => 'bra', 'BraA10t42536Z' => 'bra', 'BraA10t42537Z' => 'bra', 'C01p10690' => 'bna', 'C02p03890' => 'bna', 'C02p03900' => 'bna', 'C03p04620' => 'bna', 'C04p19870' => 'bna', 'C04p59670' => 'bna', 'C05p02460' => 'bna', 'C05p02470' => 'bna', 'C08p00980' => 'bna', 'C08p00990' => 'bna', 'C08p51030' => 'bna', 'C08p52360' => 'bna', 'C09p09120' => 'bna', 'CAN.G19.15' => 'can', 'CAN.G251.10' => 'can', 'CAN.G251.9' => 'can', 'CAN.G398.24' => 'can', 'CAN.G410.32' => 'can', 'CAN.G881.2' => 'can', 'CANSAT01G3025' => 'cansat', 'CANSAT78G1211' => 'cansat', 'CANSAT78G1218' => 'cansat', 'CANSAT78G1521' => 'cansat', 'CANSAT78G1670' => 'cansat', 'CARHR003600' => 'chi', 'CARHR003610' => 'chi', 'CARHR006290' => 'chi', 'CARHR006430' => 'chi', 'CARHR124110' => 'chi', 'CARHR203870' => 'chi', 'CARHR203880' => 'chi', 'CARHR203890' => 'chi', 'CARHR276880' => 'chi', 'Carub.0001s0346' => 'cru', 'Carub.0001s0347' => 'cru', 'Carub.0001s0607' => 'cru', 'Carub.0003s2768' => 'cru', 'Carub.0003s2769' => 'cru', 'Carub.0004s1178' => 'cru', 'Carub.0006s0806' => 'cru', 'Carub.0006s0807' => 'cru', 'Carub.0006s0808' => 'cru', 'Carub.0008s0501' => 'cru', 'Carub.0008s2379' => 'cru', 'Ca_08655_v3' => 'car', 'Ca_08922_v3' => 'car', 'Ca_08923_v3' => 'car', 'Ca_09119_v3' => 'car', 'Ca_09703_v3' => 'car', 'Ca_09705_v3' => 'car', 'Ca_09835_v3' => 'car', 'Ca_26403_v3' => 'car', 'Ca_30719_v3' => 'car', 'CBR_g17958' => 'cbr', 'CBR_g40516' => 'cbr', 'Cc00_g05350' => 'ccan', 'Cc01_g18690' => 'ccan', 'Cc03_g04830' => 'ccan', 'Cc03_g04850' => 'ccan', 'CDE02G4469' => 'cde', 'CDE06G0883' => 'cde', 'CDE06G1295' => 'cde', 'CDE06G1390' => 'cde', 'CDE07G0584' => 'cde', 'CDE07G1084' => 'cde', 'CDE08G1259' => 'cde', 'Cfa002341' => 'cfa', 'Cfa024337' => 'cfa', 'Ciclev10004749m.g' => 'ccl', 'Ciclev10006127m.g' => 'ccl', 'Ciclev10019720m.g' => 'ccl', 'Ciclev10022652m.g' => 'ccl', 'CiPaw.01G190400' => 'cil', 'CiPaw.01G190500' => 'cil', 'CiPaw.02G116400' => 'cil', 'CiPaw.02G116500' => 'cil', 'CiPaw.04G183000' => 'cil', 'CiPaw.04G183300' => 'cil', 'ClCG05G004610' => 'cla', 'ClCG05G004620' => 'cla', 'ClCG06G006730' => 'cla', 'ClCG06G006740' => 'cla', 'ClCG11G003690' => 'cla', 'COL.COLO4_08276' => 'col', 'COL.COLO4_08277' => 'col', 'COL.COLO4_15787' => 'col', 'COL.COLO4_15789' => 'col', 'Cpa.g.c44815' => 'cpa', 'Cpa.g.sc52.144' => 'cpa', 'Cpa.g.sc58.46' => 'cpa', 'Cpa.g.sc58.47' => 'cpa', 'Cre08.g360900' => 'cre', 'CsaV3_2G013030' => 'csa', 'CsaV3_2G013050' => 'csa', 'CsaV3_2G015620' => 'csa', 'CsaV3_3G012590' => 'csa', 'CsaV3_3G012600' => 'csa', 'CSS0001641' => 'camsi', 'CSS0008310' => 'camsi', 'CSS0013011' => 'camsi', 'CSS0017147' => 'camsi', 'CSS0022970' => 'camsi', 'CSS0025655' => 'camsi', 'CSS0028665' => 'camsi', 'CSS0029117' => 'camsi', 'CSS0032024' => 'camsi', 'CSS0039681' => 'camsi', 'CSS0046516' => 'camsi', 'CSS0050307' => 'camsi', 'DCAR_005871' => 'dca', 'DCAR_007342' => 'dca', 'DCAR_024228' => 'dca', 'DCAR_027277' => 'dca', 'DCAR_030718' => 'dca', 'Dinv20287' => 'din', 'Dinv22461' => 'din', 'Dinv22464' => 'din', 'Dinv29912' => 'din', 'Dinv29913' => 'din', 'Dinv34580' => 'din', 'Dinv34582' => 'din', 'Dinv44632' => 'din', 'Duzib052G0266' => 'dzi', 'Duzib133G0907' => 'dzi', 'Duzib133G1034' => 'dzi', 'Duzib138G0207' => 'dzi', 'Duzib138G0491' => 'dzi', 'Duzib151G0812' => 'dzi', 'Duzib151G1166' => 'dzi', 'Duzib168G0192' => 'dzi', 'Duzib211G0077' => 'dzi', 'Duzib212G0429' => 'dzi', 'Duzib212G0472' => 'dzi', 'ECA233G2617' => 'eca', 'ECA236G4188' => 'eca', 'ECA240G0936' => 'eca', 'ECA240G1129' => 'eca', 'ECA247G0623' => 'eca', 'EL10Ac5g10451' => 'bvu', 'EL10Ac5g10453' => 'bvu', 'EL10Ac5g10894' => 'bvu', 'Eucgr.H00192' => 'egr', 'Eucgr.H00193' => 'egr', 'Eucgr.H00194' => 'egr', 'Eucgr.J01562' => 'egr', 'Eucgr.K03301' => 'egr', 'FAN02G0632' => 'fan', 'FAN05G5378' => 'fan', 'FAN09G3247' => 'fan', 'FAN12G0435' => 'fan', 'FAN12G2426' => 'fan', 'FAN14G1707' => 'fan', 'FAN14G4725' => 'fan', 'FAN15G2071' => 'fan', 'FAN17G3065' => 'fan', 'FAN19G1376' => 'fan', 'FAN20G0354' => 'fan', 'FAN20G2429' => 'fan', 'FAN20G2658' => 'fan', 'FAN24G2343' => 'fan', 'FAN27G2362' => 'fan', 'FAN28G1765' => 'fan', 'FvH4_1g16020' => 'fve', 'FvH4_2g04890' => 'fve', 'FvH4_2g22270' => 'fve', 'FvH4_4g02630' => 'fve', 'FvH4_4g02640' => 'fve', 'FvH4_6g02650' => 'fve', 'Glyma.02G140600' => 'gma', 'Glyma.03G159900' => 'gma', 'Glyma.05G234800' => 'gma', 'Glyma.07G269600' => 'gma', 'Glyma.08G042300' => 'gma', 'Glyma.10G033500' => 'gma', 'Glyma.10G185200' => 'gma', 'Glyma.17G004300' => 'gma', 'Glyma.19G161900' => 'gma', 'Glyma.20G205100' => 'gma', 'Glyma.20G205200' => 'gma', 'Gohir.A01G139101' => 'ghi', 'Gohir.A02G035600' => 'ghi', 'Gohir.A02G117901' => 'ghi', 'Gohir.A07G210100' => 'ghi', 'Gohir.A07G210200' => 'ghi', 'Gohir.A08G061100' => 'ghi', 'Gohir.A09G223000' => 'ghi', 'Gohir.A09G223100' => 'ghi', 'Gohir.A10G113900' => 'ghi', 'Gohir.A10G114000' => 'ghi', 'Gohir.D02G042300' => 'ghi', 'Gohir.D07G216100' => 'ghi', 'Gohir.D07G216200' => 'ghi', 'Gohir.D08G070400' => 'ghi', 'Gohir.D09G225000' => 'ghi', 'Gohir.D09G225100' => 'ghi', 'Gohir.D10G152300' => 'ghi', 'Gohir.D10G153200' => 'ghi', 'Gohir.D11G133701' => 'ghi', 'Gorai.004G074100' => 'gra', 'Gorai.005G046800' => 'gra', 'Gorai.006G246500' => 'gra', 'Gorai.006G246600' => 'gra', 'Gorai.007G142900' => 'gra', 'Gorai.011G171000' => 'gra', 'Gorai.011G171100' => 'gra', 'Gorai.013G104300' => 'gra', 'Gorai.013G104400' => 'gra', 'GSVIVG01000754001' => 'vvi', 'GSVIVG01000756001' => 'vvi', 'GSVIVG01010903001' => 'vvi', 'GSVIVG01017623001' => 'vvi', 'GSVIVG01018113001' => 'vvi', 'GSVIVG01018116001' => 'vvi', 'GSVIVG01018118001' => 'vvi', 'HanXRQChr03g0076211' => 'han', 'HanXRQChr03g0092431' => 'han', 'HanXRQChr03g0092441' => 'han', 'HanXRQChr03g0092591' => 'han', 'HanXRQChr03g0092671' => 'han', 'HanXRQChr03g0092681' => 'han', 'HanXRQChr03g0092691' => 'han', 'HanXRQChr03g0092701' => 'han', 'HanXRQChr03g0092721' => 'han', 'HanXRQChr03g0092731' => 'han', 'HanXRQChr04g0113681' => 'han', 'HanXRQChr10g0281371' => 'han', 'HanXRQChr11g0337141' => 'han', 'HanXRQChr13g0424521' => 'han', 'HanXRQChr13g0424531' => 'han', 'HanXRQChr13g0424541' => 'han', 'HanXRQChr16g0498221' => 'han', 'Haze_04377' => 'cav', 'Haze_11298' => 'cav', 'Haze_24547' => 'cav', 'Haze_24550' => 'cav', 'Haze_26587' => 'cav', 'Hma1.2p1_0650F.1_g195410' => 'hma', 'Hma1.2p1_0893F.1_g233470' => 'hma', 'HPP92_006508' => 'vpl', 'HPP92_024780' => 'vpl', 'Hund02688' => 'sun', 'Hund09380' => 'sun', 'Hund09381' => 'sun', 'Hund09832' => 'sun', 'Hund09833' => 'sun', 'Hund11351' => 'sun', 'Hund11513' => 'sun', 'Lalb_Chr06g0162591' => 'lal', 'Lalb_Chr06g0162601' => 'lal', 'Lalb_Chr06g0169321' => 'lal', 'Lalb_Chr09g0330951' => 'lal', 'Lalb_Chr16g0387631' => 'lal', 'Lalb_Chr21g0306241' => 'lal', 'Lalb_Chr25g0290051' => 'lal', 'Lalb_Chr25g0290061' => 'lal', 'Lalb_Chr25g0290071' => 'lal', 'Lj1g0003876' => 'lja', 'Lj1P1207T36' => 'lonja', 'Lj2C1156G12' => 'lonja', 'Lj3A793G39' => 'lonja', 'Lj3C580G2' => 'lonja', 'Lj3C780G2' => 'lonja', 'Lj3C780T4' => 'lonja', 'Lj3C793G9' => 'lonja', 'Lj4g0012960' => 'lja', 'Lj5g0021252' => 'lja', 'Lj5g0021484' => 'lja', 'Lj5g0024528' => 'lja', 'Lj6A399T12' => 'lonja', 'Lj6A656G65' => 'lonja', 'Lsat_1_v5_gn_3_125500' => 'lsa', 'Lsat_1_v5_gn_3_125540' => 'lsa', 'Lsat_1_v5_gn_5_72701' => 'lsa', 'Lsat_1_v5_gn_8_91560' => 'lsa', 'Lsat_1_v5_gn_9_9640' => 'lsa', 'Manes.01G200600' => 'mes', 'Manes.01G200700' => 'mes', 'Manes.03G168900' => 'mes', 'Manes.03G169000' => 'mes', 'Manes.05G085801' => 'mes', 'Manes.05G086200' => 'mes', 'Manes.15G036700' => 'mes', 'Manes.15G036900' => 'mes', 'Mapoly0004s0172' => 'mpo', 'Mapoly0023s0001' => 'mpo', 'Mapoly0142s0012' => 'mpo', 'MBI01_g32854_MAGBIO' => 'mbi', 'MBI11_g24427_MAGBIO' => 'mbi', 'MBI11_g47319_MAGBIO' => 'mbi', 'MCO01G433' => 'mco', 'MD00G1187800' => 'mdo', 'MD04G1226500' => 'mdo', 'MD05G1203900' => 'mdo', 'MD10G1191100' => 'mdo', 'MD12G1243500' => 'mdo', 'MD13G1207000' => 'mdo', 'MD13G1207100' => 'mdo', 'MD16G1208600' => 'mdo', 'Medtr1g050352' => 'mtr', 'Medtr1g070385' => 'mtr', 'Medtr1g070450' => 'mtr', 'Medtr1g075200' => 'mtr', 'Medtr1g075250' => 'mtr', 'Medtr1g075260' => 'mtr', 'Medtr1g475250' => 'mtr', 'Medtr4g075450' => 'mtr', 'Medtr7g096300' => 'mtr', 'Medtr8g105110' => 'mtr', 'MELO3C006470.2' => 'cme', 'MELO3C006471.2' => 'cme', 'MELO3C020772.2' => 'cme', 'MELO3C026780.2' => 'cme', 'MELO3C026781.2' => 'cme', 'Migut.D00390' => 'egut', 'Migut.G00435' => 'egut', 'Migut.G00436' => 'egut', 'Migut.G00718' => 'egut', 'MSTRG.21891' => 'ama', 'MSTRG.26910' => 'ama', 'MSTRG.4099' => 'ama', 'MSTRG.9925' => 'ama', 'Nitab4.5_0000165g0010' => 'nta', 'Nitab4.5_0000209g0180' => 'nta', 'Nitab4.5_0000244g0440' => 'nta', 'Nitab4.5_0000525g0220' => 'nta', 'Nitab4.5_0001597g0020' => 'nta', 'Nitab4.5_0001878g0040' => 'nta', 'Nitab4.5_0001878g0060' => 'nta', 'Nitab4.5_0002838g0100' => 'nta', 'Nitab4.5_0002838g0120' => 'nta', 'Nitab4.5_0004798g0030' => 'nta', 'Nitab4.5_0005420g0010' => 'nta', 'Nitab4.5_0005507g0010' => 'nta', 'Nitab4.5_0005574g0020' => 'nta', 'Nitab4.5_0005838g0010' => 'nta', 'Nitab4.5_0010580g0020' => 'nta', 'Nn1g02599' => 'nnu', 'Nn1g02608' => 'nnu', 'Nn3g17742' => 'nnu', 'Nn3g19534' => 'nnu', 'Nn3g19535' => 'nnu', 'Oeu008790.1' => 'oeu', 'Oeu008792.1' => 'oeu', 'Oeu032590.1' => 'oeu', 'Oeu035349.1' => 'oeu', 'Oeu049791.1' => 'oeu', 'Os01g0774500' => 'osa', 'Os03g0628800' => 'osa', 'Os03g0798600' => 'osa', 'Os05g0508800' => 'osa', 'Peaxi162Scf00036g02018' => 'pax', 'Peaxi162Scf00578g00032' => 'pax', 'Peaxi162Scf00578g00317' => 'pax', 'Peaxi162Scf00785g00114' => 'pax', 'Peaxi162Scf00813g00119' => 'pax', 'Peaxi162Scf00906g00227' => 'pax', 'PGR004G0875' => 'pgr', 'PGR004G2424' => 'pgr', 'PGR031G1239' => 'pgr', 'PGR031G2474' => 'pgr', 'PGR044G0423' => 'pgr', 'PGSC0003DMG400001128' => 'stu', 'PGSC0003DMG400007336' => 'stu', 'PGSC0003DMG400016318' => 'stu', 'PGSC0003DMG400016319' => 'stu', 'PGSC0003DMG400018074' => 'stu', 'Phvul.001G157700' => 'pvu', 'Phvul.002G148550' => 'pvu', 'Phvul.002G320200' => 'pvu', 'Phvul.003G089200' => 'pvu', 'Phvul.007G126000' => 'pvu', 'Phvul.007G126100' => 'pvu', 'Phvul.007G178000' => 'pvu', 'Phvul.007G178200' => 'pvu', 'Potri.002G043000' => 'ptr', 'Potri.002G043200' => 'ptr', 'Potri.003G123750' => 'ptr', 'Potri.005G055401' => 'ptr', 'Potri.005G219700' => 'ptr', 'Potri.005G220000' => 'ptr', 'Potri.008G161901' => 'ptr', 'Potri.008G162000' => 'ptr', 'Potri.008G162400' => 'ptr', 'Potri.010G076900' => 'ptr', 'Pp3c12_9180' => 'ppa', 'Pp3c13_19770' => 'ppa', 'Pp3c14_22950' => 'ppa', 'Pp3c16_12160' => 'ppa', 'Pp3c27_7820' => 'ppa', 'Pp3c2_3490' => 'ppa', 'Pp3c3_23700' => 'ppa', 'Pp3c3_36520' => 'ppa', 'Pp3c4_15250' => 'ppa', 'PRCOL_00007002' => 'pco', 'Prupe.1G030600' => 'ppe', 'Prupe.1G030700' => 'ppe', 'Prupe.6G345200' => 'ppe', 'Prupe.8G230300' => 'ppe', 'Prupe.8G230500' => 'ppe', 'Psat3g059600' => 'psa', 'Psat5g200920' => 'psa', 'Psat6g056440' => 'psa', 'Psat6g057360' => 'psa', 'Psat6g134120' => 'psa', 'Psat6g134160' => 'psa', 'Psat7g008640' => 'psa', 'Psat7g185240' => 'psa', 'PSO017G1330' => 'pso', 'PSO063G6097' => 'pso', 'PSO170G0835' => 'pso', 'PSO170G2499' => 'pso', 'PSO210G5058' => 'pso', 'PSO210G6154' => 'pso', 'PSO585G0031' => 'pso', 'PSO832G0264' => 'pso', 'PSO832G4288' => 'pso', 'QL03p027355' => 'qlo', 'QL03p027430' => 'qlo', 'QL04p081380' => 'qlo', 'QL06p015642' => 'qlo', 'QL06p015650' => 'qlo', 'QL06p015686' => 'qlo', 'QL12p042927' => 'qlo', 'QL93p1863_0035' => 'qlo', 'RcHm_v2.0_Chr3g0450581' => 'rch', 'RcHm_v2.0_Chr4g0390371' => 'rch', 'RcHm_v2.0_Chr4g0390381' => 'rch', 'RcHm_v2.0_Chr4g0390491' => 'rch', 'RcHm_v2.0_Chr4g0390501' => 'rch', 'RcHm_v2.0_Chr6g0289231' => 'rch', 'Rhsim04G0190400' => 'rsi', 'Rhsim04G0190500' => 'rsi', 'Rhsim04G0190600' => 'rsi', 'Rhsim13G0031400' => 'rsi', 'Rhsim13G0165600' => 'rsi', 'RhsimUnG0114600' => 'rsi', 'RhsimUnG0114700' => 'rsi', 'Sabra02G0034800' => 'sbr', 'Sabra02G0035100' => 'sbr', 'Sabra05G0168600' => 'sbr', 'Sabra05G0168800' => 'sbr', 'Sabra08G0123700' => 'sbr', 'Sabra10G0031900' => 'sbr', 'Sabra13G0039000' => 'sbr', 'SalBow2G0782' => 'sbo', 'SalBow2G1403' => 'sbo', 'SalBow4G0074' => 'sbo', 'SalBow4G2635' => 'sbo', 'SalBow5G3010' => 'sbo', 'Sc05g0000870' => 'sci', 'Sc05g0000890' => 'sci', 'Sc13g0005000' => 'sci', 'Sc13g0005030' => 'sci', 'Sc19g0003790' => 'sci', 'Sc19g0003800' => 'sci', 'Sed0003467' => 'sed', 'Sed0009355' => 'sed', 'Sed0009894' => 'sed', 'Sed0011972' => 'sed', 'Sed0021483' => 'sed', 'Sed0021750' => 'sed', 'Sed0026279' => 'sed', 'SEGI_05312' => 'sgi', 'SEGI_10112' => 'sgi', 'SEGI_15835' => 'sgi', 'SEGI_30386' => 'sgi', 'SEGI_34122' => 'sgi', 'SEGI_35063' => 'sgi', 'SGA_v2.0_scaffold101G29794' => 'sas', 'SGA_v2.0_scaffold1G00573' => 'sas', 'SGA_v2.0_scaffold79G25637' => 'sas', 'SGA_v2.0_scaffold88G27283' => 'sas', 'SGA_v2.0_scaffold88G27285' => 'sas', 'SGA_v2.0_scaffold88G27331' => 'sas', 'SHI09937' => 'shi', 'SMO119G0302' => 'smo', 'SMO137G0231' => 'smo', 'SMO367G1151' => 'smo', 'Solyc02g082000.3' => 'sly', 'Solyc06g031670.3' => 'sly', 'Solyc06g053810.3' => 'sly', 'Solyc07g025457.1' => 'sly', 'Solyc08g059740.1' => 'sly', 'Solyc08g059750.3' => 'sly', 'Solyc09g083370.3' => 'sly', 'Solyc12g038950.3' => 'sly', 'Sopen02g026630' => 'spe', 'Sopen06g018930' => 'spe', 'Sopen06g018940' => 'spe', 'Sopen08g009460' => 'spe', 'Sopen09g032290' => 'spe', 'Sp1g03080' => 'spa', 'Sp1g03090' => 'spa', 'Sp1g05480' => 'spa', 'Sp2g07860' => 'spa', 'Sp2g08430' => 'spa', 'Sp2g08440' => 'spa', 'Sp2g26200' => 'spa', 'Sp4g13170' => 'spa', 'Sp6g33840' => 'spa', 'SpUn1204_0010' => 'spa', 'TAR365G0908' => 'tar', 'TAR381G1270' => 'tar', 'TAR381G1651' => 'tar', 'TAR625G1131' => 'tar', 'TAR633G0962' => 'tar', 'TAR633G1729' => 'tar', 'TAR633G1864' => 'tar', 'TAR636G0221' => 'tar', 'TAR636G0314' => 'tar', 'TAR636G3202' => 'tar', 'THA.LOC104800805' => 'tha', 'THA.LOC104801096' => 'tha', 'THA.LOC104801555' => 'tha', 'THA.LOC104808491' => 'tha', 'THA.LOC104808595' => 'tha', 'THA.LOC104815985' => 'tha', 'THA.LOC104822250' => 'tha', 'THA.LOC104826071' => 'tha', 'Thecc.01G265200' => 'tca', 'Thecc.01G265300' => 'tca', 'Thecc.01G265700' => 'tca', 'Thecc.03G109100' => 'tca', 'Thecc.04G245900' => 'tca', 'Thecc.04G246000' => 'tca', 'Thhalv10003334m.g' => 'esa', 'Thhalv10005508m.g' => 'esa', 'Thhalv10005643m.g' => 'esa', 'Thhalv10007316m.g' => 'esa', 'Thhalv10009006m.g' => 'esa', 'Thhalv10009309m.g' => 'esa', 'Thhalv10014917m.g' => 'esa', 'Thhalv10014919m.g' => 'esa', 'Thhalv10015393m.g' => 'esa', 'Thhalv10016515m.g' => 'esa', 'Thhalv10029242m.g' => 'esa', 'TPR.G16654' => 'tpr', 'TPR.G20589' => 'tpr', 'TPR.G23029' => 'tpr', 'TPR.G27731' => 'tpr', 'TPR.G28889' => 'tpr', 'TPR.G28899' => 'tpr', 'TPR.G30846' => 'tpr', 'TPR.G5452' => 'tpr', 'TPR.G5713' => 'tpr', 'TPR.G9046' => 'tpr', 'TPR.G9061' => 'tpr', 'TWI09G1075' => 'twi', 'TWI12G0806' => 'twi', 'TWI18G0108' => 'twi', 'TWI53G1361' => 'twi', 'TWI73G0185' => 'twi', 'TWI73G0427' => 'twi', 'unitig_37.g12001' => 'ugi', 'unitig_747.g21660' => 'ugi', 'unitig_748.g7232' => 'ugi', 'unitig_748.g7315' => 'ugi', 'unitig_85.g27262' => 'ugi', 'unitig_92.g28220' => 'ugi', 'vmacro02632' => 'vma', 'vmacro08410' => 'vma', 'vmacro08411' => 'vma', 'vmacro15407' => 'vma', 'VMungo0251G3619' => 'vmu', 'VMungo0720G1204' => 'vmu', 'VMungo0720G1918' => 'vmu', 'VMungo0720G2387' => 'vmu', 'VMungo0720G2961' => 'vmu', 'VMungo1215G2154' => 'vmu', 'VMungo1383G2411' => 'vmu', 'Zm00001eb051130' => 'zma', 'Zm00001eb116830' => 'zma', 'Zm00001eb116850' => 'zma', 'Zm00001eb151740' => 'zma', 'Zm00001eb292360' => 'zma', 'Zm00001eb301640' => 'zma' ), 'gf_id' => 'HOM05D000856', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000856' ), 'data_identifier' => 'HOM05D000856', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000856', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p00010' => 'bna', 'A03p04160' => 'bna', 'A03p17160' => 'bna', 'A04p23370' => 'bna', 'A05p14860' => 'bna', 'A08p37020' => 'bna', 'A09p08050' => 'bna', 'A09p66800' => 'bna', 'A09p67940' => 'bna', 'A10p02680' => 'bna', 'A10p05320' => 'bna', 'Aa31LG1G20560' => 'aar', 'Aa31LG1G20610' => 'aar', 'Aa31LG1G7810' => 'aar', 'Aa31LG5G3590' => 'aar', 'Aa31LG5G6140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3819' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4683' => 'aag', 'Actinidia04480' => 'ach', 'Actinidia05466' => 'ach', 'Actinidia08445' => 'ach', 'Actinidia21170' => 'ach', 'Actinidia24812' => 'ach', 'Actinidia24951' => 'ach', 'Actinidia40088' => 'ach', 'Ah.02g111660' => 'amhyb', 'Ah.11g048900' => 'amhyb', 'Ah.11g049910' => 'amhyb', 'AL1G13870' => 'aly', 'AL1G13880' => 'aly', 'AL1G16760' => 'aly', 'AL390U10020' => 'aly', 'AL4G25520' => 'aly', 'AL6G19890' => 'aly', 'AL6G19900' => 'aly', 'AL6G19910' => 'aly', 'AL8G40100' => 'aly', 'Aqoxy2G03562' => 'aox', 'Aqoxy5G00316' => 'aox', 'Aqoxy5G00926' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1628KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1H403S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2FU6SJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.882I6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8YRY2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YN1SN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AF70II' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZA8L1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F916KL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHRD8H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KTZ8QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S22EMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8M29T' => 'arhy', 'AT1G04270' => 'ath', 'AT1G04280' => 'ath', 'AT1G06750' => 'ath', 'AT1G33850' => 'ath', 'AT2G30630' => 'ath', 'AT5G09490' => 'ath', 'AT5G09500' => 'ath', 'AT5G09510' => 'ath', 'AT5G43640' => 'ath', 'AT5G63070' => 'ath', 'ATR0605G315' => 'atr', 'Atru.chr11.175' => 'acertr', 'Atru.chr11.653' => 'acertr', 'Atru.chr3.1616' => 'acertr', 'Atru.chr4.2230' => 'acertr', 'Atru.chr4.2232' => 'acertr', 'Atru.chr5.1598' => 'acertr', 'Atru.chr5.1600' => 'acertr', 'Atru.chr5.2188' => 'acertr', 'AUR62008326' => 'cqu', 'AUR62011922' => 'cqu', 'AUR62011924' => 'cqu', 'AUR62021771' => 'cqu', 'AUR62032237' => 'cqu', 'AUR62032240' => 'cqu', 'BcaB01g05572' => 'bca', 'BcaB02g10337' => 'bca', 'BcaB04g19944' => 'bca', 'BcaB05g21548' => 'bca', 'BcaB05g21549' => 'bca', 'BcaB05g23227' => 'bca', 'BcaB06g26256' => 'bca', 'BcaB06g26257' => 'bca', 'BcaB06g28379' => 'bca', 'BcaC02g11159' => 'bca', 'BcaC03g13258' => 'bca', 'BcaC03g13259' => 'bca', 'BcaC05g24456' => 'bca', 'BcaC05g24457' => 'bca', 'BcaC07g36922' => 'bca', 'BcaC07g36923' => 'bca', 'BcaC07g42050' => 'bca', 'BcaC07g42176' => 'bca', 'BcaC07g42195' => 'bca', 'BcaC07g42196' => 'bca', 'BcaNung06674' => 'bca', 'BolC2t06351H' => 'bol', 'BolC2t06352H' => 'bol', 'BolC3t12993H' => 'bol', 'BolC4t23525H' => 'bol', 'BolC4t27475H' => 'bol', 'BolC5t29025H' => 'bol', 'BolC5t29026H' => 'bol', 'BolC8t46898H' => 'bol', 'BolC8t46899H' => 'bol', 'BolC8t52630H' => 'bol', 'BolC8t52765H' => 'bol', 'BolC9t53824H' => 'bol', 'BraA03t09760Z' => 'bra', 'BraA03t10990Z' => 'bra', 'BraA05t20413Z' => 'bra', 'BraA08t35602Z' => 'bra', 'BraA09t36458Z' => 'bra', 'BraA09t42018Z' => 'bra', 'BraA09t42129Z' => 'bra', 'BraA10t42536Z' => 'bra', 'BraA10t42537Z' => 'bra', 'C01p10690' => 'bna', 'C02p03890' => 'bna', 'C02p03900' => 'bna', 'C03p04620' => 'bna', 'C04p19870' => 'bna', 'C04p59670' => 'bna', 'C05p02460' => 'bna', 'C05p02470' => 'bna', 'C08p00980' => 'bna', 'C08p00990' => 'bna', 'C08p51030' => 'bna', 'C08p52360' => 'bna', 'C09p09120' => 'bna', 'CAN.G19.15' => 'can', 'CAN.G251.10' => 'can', 'CAN.G251.9' => 'can', 'CAN.G398.24' => 'can', 'CAN.G410.32' => 'can', 'CAN.G881.2' => 'can', 'CANSAT01G3025' => 'cansat', 'CANSAT78G1211' => 'cansat', 'CANSAT78G1218' => 'cansat', 'CANSAT78G1521' => 'cansat', 'CANSAT78G1670' => 'cansat', 'CARHR003600' => 'chi', 'CARHR003610' => 'chi', 'CARHR006290' => 'chi', 'CARHR006430' => 'chi', 'CARHR124110' => 'chi', 'CARHR203870' => 'chi', 'CARHR203880' => 'chi', 'CARHR203890' => 'chi', 'CARHR276880' => 'chi', 'Carub.0001s0346' => 'cru', 'Carub.0001s0347' => 'cru', 'Carub.0001s0607' => 'cru', 'Carub.0003s2768' => 'cru', 'Carub.0003s2769' => 'cru', 'Carub.0004s1178' => 'cru', 'Carub.0006s0806' => 'cru', 'Carub.0006s0807' => 'cru', 'Carub.0006s0808' => 'cru', 'Carub.0008s0501' => 'cru', 'Carub.0008s2379' => 'cru', 'Ca_08655_v3' => 'car', 'Ca_08922_v3' => 'car', 'Ca_08923_v3' => 'car', 'Ca_09119_v3' => 'car', 'Ca_09703_v3' => 'car', 'Ca_09705_v3' => 'car', 'Ca_09835_v3' => 'car', 'Ca_26403_v3' => 'car', 'Ca_30719_v3' => 'car', 'CBR_g17958' => 'cbr', 'CBR_g40516' => 'cbr', 'Cc00_g05350' => 'ccan', 'Cc01_g18690' => 'ccan', 'Cc03_g04830' => 'ccan', 'Cc03_g04850' => 'ccan', 'CDE02G4469' => 'cde', 'CDE06G0883' => 'cde', 'CDE06G1295' => 'cde', 'CDE06G1390' => 'cde', 'CDE07G0584' => 'cde', 'CDE07G1084' => 'cde', 'CDE08G1259' => 'cde', 'Cfa002341' => 'cfa', 'Cfa024337' => 'cfa', 'Ciclev10004749m.g' => 'ccl', 'Ciclev10006127m.g' => 'ccl', 'Ciclev10019720m.g' => 'ccl', 'Ciclev10022652m.g' => 'ccl', 'CiPaw.01G190400' => 'cil', 'CiPaw.01G190500' => 'cil', 'CiPaw.02G116400' => 'cil', 'CiPaw.02G116500' => 'cil', 'CiPaw.04G183000' => 'cil', 'CiPaw.04G183300' => 'cil', 'ClCG05G004610' => 'cla', 'ClCG05G004620' => 'cla', 'ClCG06G006730' => 'cla', 'ClCG06G006740' => 'cla', 'ClCG11G003690' => 'cla', 'COL.COLO4_08276' => 'col', 'COL.COLO4_08277' => 'col', 'COL.COLO4_15787' => 'col', 'COL.COLO4_15789' => 'col', 'Cpa.g.c44815' => 'cpa', 'Cpa.g.sc52.144' => 'cpa', 'Cpa.g.sc58.46' => 'cpa', 'Cpa.g.sc58.47' => 'cpa', 'Cre08.g360900' => 'cre', 'CsaV3_2G013030' => 'csa', 'CsaV3_2G013050' => 'csa', 'CsaV3_2G015620' => 'csa', 'CsaV3_3G012590' => 'csa', 'CsaV3_3G012600' => 'csa', 'CSS0001641' => 'camsi', 'CSS0008310' => 'camsi', 'CSS0013011' => 'camsi', 'CSS0017147' => 'camsi', 'CSS0022970' => 'camsi', 'CSS0025655' => 'camsi', 'CSS0028665' => 'camsi', 'CSS0029117' => 'camsi', 'CSS0032024' => 'camsi', 'CSS0039681' => 'camsi', 'CSS0046516' => 'camsi', 'CSS0050307' => 'camsi', 'DCAR_005871' => 'dca', 'DCAR_007342' => 'dca', 'DCAR_024228' => 'dca', 'DCAR_027277' => 'dca', 'DCAR_030718' => 'dca', 'Dinv20287' => 'din', 'Dinv22461' => 'din', 'Dinv22464' => 'din', 'Dinv29912' => 'din', 'Dinv29913' => 'din', 'Dinv34580' => 'din', 'Dinv34582' => 'din', 'Dinv44632' => 'din', 'Duzib052G0266' => 'dzi', 'Duzib133G0907' => 'dzi', 'Duzib133G1034' => 'dzi', 'Duzib138G0207' => 'dzi', 'Duzib138G0491' => 'dzi', 'Duzib151G0812' => 'dzi', 'Duzib151G1166' => 'dzi', 'Duzib168G0192' => 'dzi', 'Duzib211G0077' => 'dzi', 'Duzib212G0429' => 'dzi', 'Duzib212G0472' => 'dzi', 'ECA233G2617' => 'eca', 'ECA236G4188' => 'eca', 'ECA240G0936' => 'eca', 'ECA240G1129' => 'eca', 'ECA247G0623' => 'eca', 'EL10Ac5g10451' => 'bvu', 'EL10Ac5g10453' => 'bvu', 'EL10Ac5g10894' => 'bvu', 'Eucgr.H00192' => 'egr', 'Eucgr.H00193' => 'egr', 'Eucgr.H00194' => 'egr', 'Eucgr.J01562' => 'egr', 'Eucgr.K03301' => 'egr', 'FAN02G0632' => 'fan', 'FAN05G5378' => 'fan', 'FAN09G3247' => 'fan', 'FAN12G0435' => 'fan', 'FAN12G2426' => 'fan', 'FAN14G1707' => 'fan', 'FAN14G4725' => 'fan', 'FAN15G2071' => 'fan', 'FAN17G3065' => 'fan', 'FAN19G1376' => 'fan', 'FAN20G0354' => 'fan', 'FAN20G2429' => 'fan', 'FAN20G2658' => 'fan', 'FAN24G2343' => 'fan', 'FAN27G2362' => 'fan', 'FAN28G1765' => 'fan', 'FvH4_1g16020' => 'fve', 'FvH4_2g04890' => 'fve', 'FvH4_2g22270' => 'fve', 'FvH4_4g02630' => 'fve', 'FvH4_4g02640' => 'fve', 'FvH4_6g02650' => 'fve', 'Glyma.02G140600' => 'gma', 'Glyma.03G159900' => 'gma', 'Glyma.05G234800' => 'gma', 'Glyma.07G269600' => 'gma', 'Glyma.08G042300' => 'gma', 'Glyma.10G033500' => 'gma', 'Glyma.10G185200' => 'gma', 'Glyma.17G004300' => 'gma', 'Glyma.19G161900' => 'gma', 'Glyma.20G205100' => 'gma', 'Glyma.20G205200' => 'gma', 'Gohir.A01G139101' => 'ghi', 'Gohir.A02G035600' => 'ghi', 'Gohir.A02G117901' => 'ghi', 'Gohir.A07G210100' => 'ghi', 'Gohir.A07G210200' => 'ghi', 'Gohir.A08G061100' => 'ghi', 'Gohir.A09G223000' => 'ghi', 'Gohir.A09G223100' => 'ghi', 'Gohir.A10G113900' => 'ghi', 'Gohir.A10G114000' => 'ghi', 'Gohir.D02G042300' => 'ghi', 'Gohir.D07G216100' => 'ghi', 'Gohir.D07G216200' => 'ghi', 'Gohir.D08G070400' => 'ghi', 'Gohir.D09G225000' => 'ghi', 'Gohir.D09G225100' => 'ghi', 'Gohir.D10G152300' => 'ghi', 'Gohir.D10G153200' => 'ghi', 'Gohir.D11G133701' => 'ghi', 'Gorai.004G074100' => 'gra', 'Gorai.005G046800' => 'gra', 'Gorai.006G246500' => 'gra', 'Gorai.006G246600' => 'gra', 'Gorai.007G142900' => 'gra', 'Gorai.011G171000' => 'gra', 'Gorai.011G171100' => 'gra', 'Gorai.013G104300' => 'gra', 'Gorai.013G104400' => 'gra', 'GSVIVG01000754001' => 'vvi', 'GSVIVG01000756001' => 'vvi', 'GSVIVG01010903001' => 'vvi', 'GSVIVG01017623001' => 'vvi', 'GSVIVG01018113001' => 'vvi', 'GSVIVG01018116001' => 'vvi', 'GSVIVG01018118001' => 'vvi', 'HanXRQChr03g0076211' => 'han', 'HanXRQChr03g0092431' => 'han', 'HanXRQChr03g0092441' => 'han', 'HanXRQChr03g0092591' => 'han', 'HanXRQChr03g0092671' => 'han', 'HanXRQChr03g0092681' => 'han', 'HanXRQChr03g0092691' => 'han', 'HanXRQChr03g0092701' => 'han', 'HanXRQChr03g0092721' => 'han', 'HanXRQChr03g0092731' => 'han', 'HanXRQChr04g0113681' => 'han', 'HanXRQChr10g0281371' => 'han', 'HanXRQChr11g0337141' => 'han', 'HanXRQChr13g0424521' => 'han', 'HanXRQChr13g0424531' => 'han', 'HanXRQChr13g0424541' => 'han', 'HanXRQChr16g0498221' => 'han', 'Haze_04377' => 'cav', 'Haze_11298' => 'cav', 'Haze_24547' => 'cav', 'Haze_24550' => 'cav', 'Haze_26587' => 'cav', 'Hma1.2p1_0650F.1_g195410' => 'hma', 'Hma1.2p1_0893F.1_g233470' => 'hma', 'HPP92_006508' => 'vpl', 'HPP92_024780' => 'vpl', 'Hund02688' => 'sun', 'Hund09380' => 'sun', 'Hund09381' => 'sun', 'Hund09832' => 'sun', 'Hund09833' => 'sun', 'Hund11351' => 'sun', 'Hund11513' => 'sun', 'Lalb_Chr06g0162591' => 'lal', 'Lalb_Chr06g0162601' => 'lal', 'Lalb_Chr06g0169321' => 'lal', 'Lalb_Chr09g0330951' => 'lal', 'Lalb_Chr16g0387631' => 'lal', 'Lalb_Chr21g0306241' => 'lal', 'Lalb_Chr25g0290051' => 'lal', 'Lalb_Chr25g0290061' => 'lal', 'Lalb_Chr25g0290071' => 'lal', 'Lj1g0003876' => 'lja', 'Lj1P1207T36' => 'lonja', 'Lj2C1156G12' => 'lonja', 'Lj3A793G39' => 'lonja', 'Lj3C580G2' => 'lonja', 'Lj3C780G2' => 'lonja', 'Lj3C780T4' => 'lonja', 'Lj3C793G9' => 'lonja', 'Lj4g0012960' => 'lja', 'Lj5g0021252' => 'lja', 'Lj5g0021484' => 'lja', 'Lj5g0024528' => 'lja', 'Lj6A399T12' => 'lonja', 'Lj6A656G65' => 'lonja', 'Lsat_1_v5_gn_3_125500' => 'lsa', 'Lsat_1_v5_gn_3_125540' => 'lsa', 'Lsat_1_v5_gn_5_72701' => 'lsa', 'Lsat_1_v5_gn_8_91560' => 'lsa', 'Lsat_1_v5_gn_9_9640' => 'lsa', 'Manes.01G200600' => 'mes', 'Manes.01G200700' => 'mes', 'Manes.03G168900' => 'mes', 'Manes.03G169000' => 'mes', 'Manes.05G085801' => 'mes', 'Manes.05G086200' => 'mes', 'Manes.15G036700' => 'mes', 'Manes.15G036900' => 'mes', 'Mapoly0004s0172' => 'mpo', 'Mapoly0023s0001' => 'mpo', 'Mapoly0142s0012' => 'mpo', 'MBI01_g32854_MAGBIO' => 'mbi', 'MBI11_g24427_MAGBIO' => 'mbi', 'MBI11_g47319_MAGBIO' => 'mbi', 'MCO01G433' => 'mco', 'MD00G1187800' => 'mdo', 'MD04G1226500' => 'mdo', 'MD05G1203900' => 'mdo', 'MD10G1191100' => 'mdo', 'MD12G1243500' => 'mdo', 'MD13G1207000' => 'mdo', 'MD13G1207100' => 'mdo', 'MD16G1208600' => 'mdo', 'Medtr1g050352' => 'mtr', 'Medtr1g070385' => 'mtr', 'Medtr1g070450' => 'mtr', 'Medtr1g075200' => 'mtr', 'Medtr1g075250' => 'mtr', 'Medtr1g075260' => 'mtr', 'Medtr1g475250' => 'mtr', 'Medtr4g075450' => 'mtr', 'Medtr7g096300' => 'mtr', 'Medtr8g105110' => 'mtr', 'MELO3C006470.2' => 'cme', 'MELO3C006471.2' => 'cme', 'MELO3C020772.2' => 'cme', 'MELO3C026780.2' => 'cme', 'MELO3C026781.2' => 'cme', 'Migut.D00390' => 'egut', 'Migut.G00435' => 'egut', 'Migut.G00436' => 'egut', 'Migut.G00718' => 'egut', 'MSTRG.21891' => 'ama', 'MSTRG.26910' => 'ama', 'MSTRG.4099' => 'ama', 'MSTRG.9925' => 'ama', 'Nitab4.5_0000165g0010' => 'nta', 'Nitab4.5_0000209g0180' => 'nta', 'Nitab4.5_0000244g0440' => 'nta', 'Nitab4.5_0000525g0220' => 'nta', 'Nitab4.5_0001597g0020' => 'nta', 'Nitab4.5_0001878g0040' => 'nta', 'Nitab4.5_0001878g0060' => 'nta', 'Nitab4.5_0002838g0100' => 'nta', 'Nitab4.5_0002838g0120' => 'nta', 'Nitab4.5_0004798g0030' => 'nta', 'Nitab4.5_0005420g0010' => 'nta', 'Nitab4.5_0005507g0010' => 'nta', 'Nitab4.5_0005574g0020' => 'nta', 'Nitab4.5_0005838g0010' => 'nta', 'Nitab4.5_0010580g0020' => 'nta', 'Nn1g02599' => 'nnu', 'Nn1g02608' => 'nnu', 'Nn3g17742' => 'nnu', 'Nn3g19534' => 'nnu', 'Nn3g19535' => 'nnu', 'Oeu008790.1' => 'oeu', 'Oeu008792.1' => 'oeu', 'Oeu032590.1' => 'oeu', 'Oeu035349.1' => 'oeu', 'Oeu049791.1' => 'oeu', 'Os01g0774500' => 'osa', 'Os03g0628800' => 'osa', 'Os03g0798600' => 'osa', 'Os05g0508800' => 'osa', 'Peaxi162Scf00036g02018' => 'pax', 'Peaxi162Scf00578g00032' => 'pax', 'Peaxi162Scf00578g00317' => 'pax', 'Peaxi162Scf00785g00114' => 'pax', 'Peaxi162Scf00813g00119' => 'pax', 'Peaxi162Scf00906g00227' => 'pax', 'PGR004G0875' => 'pgr', 'PGR004G2424' => 'pgr', 'PGR031G1239' => 'pgr', 'PGR031G2474' => 'pgr', 'PGR044G0423' => 'pgr', 'PGSC0003DMG400001128' => 'stu', 'PGSC0003DMG400007336' => 'stu', 'PGSC0003DMG400016318' => 'stu', 'PGSC0003DMG400016319' => 'stu', 'PGSC0003DMG400018074' => 'stu', 'Phvul.001G157700' => 'pvu', 'Phvul.002G148550' => 'pvu', 'Phvul.002G320200' => 'pvu', 'Phvul.003G089200' => 'pvu', 'Phvul.007G126000' => 'pvu', 'Phvul.007G126100' => 'pvu', 'Phvul.007G178000' => 'pvu', 'Phvul.007G178200' => 'pvu', 'Potri.002G043000' => 'ptr', 'Potri.002G043200' => 'ptr', 'Potri.003G123750' => 'ptr', 'Potri.005G055401' => 'ptr', 'Potri.005G219700' => 'ptr', 'Potri.005G220000' => 'ptr', 'Potri.008G161901' => 'ptr', 'Potri.008G162000' => 'ptr', 'Potri.008G162400' => 'ptr', 'Potri.010G076900' => 'ptr', 'Pp3c12_9180' => 'ppa', 'Pp3c13_19770' => 'ppa', 'Pp3c14_22950' => 'ppa', 'Pp3c16_12160' => 'ppa', 'Pp3c27_7820' => 'ppa', 'Pp3c2_3490' => 'ppa', 'Pp3c3_23700' => 'ppa', 'Pp3c3_36520' => 'ppa', 'Pp3c4_15250' => 'ppa', 'PRCOL_00007002' => 'pco', 'Prupe.1G030600' => 'ppe', 'Prupe.1G030700' => 'ppe', 'Prupe.6G345200' => 'ppe', 'Prupe.8G230300' => 'ppe', 'Prupe.8G230500' => 'ppe', 'Psat3g059600' => 'psa', 'Psat5g200920' => 'psa', 'Psat6g056440' => 'psa', 'Psat6g057360' => 'psa', 'Psat6g134120' => 'psa', 'Psat6g134160' => 'psa', 'Psat7g008640' => 'psa', 'Psat7g185240' => 'psa', 'PSO017G1330' => 'pso', 'PSO063G6097' => 'pso', 'PSO170G0835' => 'pso', 'PSO170G2499' => 'pso', 'PSO210G5058' => 'pso', 'PSO210G6154' => 'pso', 'PSO585G0031' => 'pso', 'PSO832G0264' => 'pso', 'PSO832G4288' => 'pso', 'QL03p027355' => 'qlo', 'QL03p027430' => 'qlo', 'QL04p081380' => 'qlo', 'QL06p015642' => 'qlo', 'QL06p015650' => 'qlo', 'QL06p015686' => 'qlo', 'QL12p042927' => 'qlo', 'QL93p1863_0035' => 'qlo', 'RcHm_v2.0_Chr3g0450581' => 'rch', 'RcHm_v2.0_Chr4g0390371' => 'rch', 'RcHm_v2.0_Chr4g0390381' => 'rch', 'RcHm_v2.0_Chr4g0390491' => 'rch', 'RcHm_v2.0_Chr4g0390501' => 'rch', 'RcHm_v2.0_Chr6g0289231' => 'rch', 'Rhsim04G0190400' => 'rsi', 'Rhsim04G0190500' => 'rsi', 'Rhsim04G0190600' => 'rsi', 'Rhsim13G0031400' => 'rsi', 'Rhsim13G0165600' => 'rsi', 'RhsimUnG0114600' => 'rsi', 'RhsimUnG0114700' => 'rsi', 'Sabra02G0034800' => 'sbr', 'Sabra02G0035100' => 'sbr', 'Sabra05G0168600' => 'sbr', 'Sabra05G0168800' => 'sbr', 'Sabra08G0123700' => 'sbr', 'Sabra10G0031900' => 'sbr', 'Sabra13G0039000' => 'sbr', 'SalBow2G0782' => 'sbo', 'SalBow2G1403' => 'sbo', 'SalBow4G0074' => 'sbo', 'SalBow4G2635' => 'sbo', 'SalBow5G3010' => 'sbo', 'Sc05g0000870' => 'sci', 'Sc05g0000890' => 'sci', 'Sc13g0005000' => 'sci', 'Sc13g0005030' => 'sci', 'Sc19g0003790' => 'sci', 'Sc19g0003800' => 'sci', 'Sed0003467' => 'sed', 'Sed0009355' => 'sed', 'Sed0009894' => 'sed', 'Sed0011972' => 'sed', 'Sed0021483' => 'sed', 'Sed0021750' => 'sed', 'Sed0026279' => 'sed', 'SEGI_05312' => 'sgi', 'SEGI_10112' => 'sgi', 'SEGI_15835' => 'sgi', 'SEGI_30386' => 'sgi', 'SEGI_34122' => 'sgi', 'SEGI_35063' => 'sgi', 'SGA_v2.0_scaffold101G29794' => 'sas', 'SGA_v2.0_scaffold1G00573' => 'sas', 'SGA_v2.0_scaffold79G25637' => 'sas', 'SGA_v2.0_scaffold88G27283' => 'sas', 'SGA_v2.0_scaffold88G27285' => 'sas', 'SGA_v2.0_scaffold88G27331' => 'sas', 'SHI09937' => 'shi', 'SMO119G0302' => 'smo', 'SMO137G0231' => 'smo', 'SMO367G1151' => 'smo', 'Solyc02g082000.3' => 'sly', 'Solyc06g031670.3' => 'sly', 'Solyc06g053810.3' => 'sly', 'Solyc07g025457.1' => 'sly', 'Solyc08g059740.1' => 'sly', 'Solyc08g059750.3' => 'sly', 'Solyc09g083370.3' => 'sly', 'Solyc12g038950.3' => 'sly', 'Sopen02g026630' => 'spe', 'Sopen06g018930' => 'spe', 'Sopen06g018940' => 'spe', 'Sopen08g009460' => 'spe', 'Sopen09g032290' => 'spe', 'Sp1g03080' => 'spa', 'Sp1g03090' => 'spa', 'Sp1g05480' => 'spa', 'Sp2g07860' => 'spa', 'Sp2g08430' => 'spa', 'Sp2g08440' => 'spa', 'Sp2g26200' => 'spa', 'Sp4g13170' => 'spa', 'Sp6g33840' => 'spa', 'SpUn1204_0010' => 'spa', 'TAR365G0908' => 'tar', 'TAR381G1270' => 'tar', 'TAR381G1651' => 'tar', 'TAR625G1131' => 'tar', 'TAR633G0962' => 'tar', 'TAR633G1729' => 'tar', 'TAR633G1864' => 'tar', 'TAR636G0221' => 'tar', 'TAR636G0314' => 'tar', 'TAR636G3202' => 'tar', 'THA.LOC104800805' => 'tha', 'THA.LOC104801096' => 'tha', 'THA.LOC104801555' => 'tha', 'THA.LOC104808491' => 'tha', 'THA.LOC104808595' => 'tha', 'THA.LOC104815985' => 'tha', 'THA.LOC104822250' => 'tha', 'THA.LOC104826071' => 'tha', 'Thecc.01G265200' => 'tca', 'Thecc.01G265300' => 'tca', 'Thecc.01G265700' => 'tca', 'Thecc.03G109100' => 'tca', 'Thecc.04G245900' => 'tca', 'Thecc.04G246000' => 'tca', 'Thhalv10003334m.g' => 'esa', 'Thhalv10005508m.g' => 'esa', 'Thhalv10005643m.g' => 'esa', 'Thhalv10007316m.g' => 'esa', 'Thhalv10009006m.g' => 'esa', 'Thhalv10009309m.g' => 'esa', 'Thhalv10014917m.g' => 'esa', 'Thhalv10014919m.g' => 'esa', 'Thhalv10015393m.g' => 'esa', 'Thhalv10016515m.g' => 'esa', 'Thhalv10029242m.g' => 'esa', 'TPR.G16654' => 'tpr', 'TPR.G20589' => 'tpr', 'TPR.G23029' => 'tpr', 'TPR.G27731' => 'tpr', 'TPR.G28889' => 'tpr', 'TPR.G28899' => 'tpr', 'TPR.G30846' => 'tpr', 'TPR.G5452' => 'tpr', 'TPR.G5713' => 'tpr', 'TPR.G9046' => 'tpr', 'TPR.G9061' => 'tpr', 'TWI09G1075' => 'twi', 'TWI12G0806' => 'twi', 'TWI18G0108' => 'twi', 'TWI53G1361' => 'twi', 'TWI73G0185' => 'twi', 'TWI73G0427' => 'twi', 'unitig_37.g12001' => 'ugi', 'unitig_747.g21660' => 'ugi', 'unitig_748.g7232' => 'ugi', 'unitig_748.g7315' => 'ugi', 'unitig_85.g27262' => 'ugi', 'unitig_92.g28220' => 'ugi', 'vmacro02632' => 'vma', 'vmacro08410' => 'vma', 'vmacro08411' => 'vma', 'vmacro15407' => 'vma', 'VMungo0251G3619' => 'vmu', 'VMungo0720G1204' => 'vmu', 'VMungo0720G1918' => 'vmu', 'VMungo0720G2387' => 'vmu', 'VMungo0720G2961' => 'vmu', 'VMungo1215G2154' => 'vmu', 'VMungo1383G2411' => 'vmu', 'Zm00001eb051130' => 'zma', 'Zm00001eb116830' => 'zma', 'Zm00001eb116850' => 'zma', 'Zm00001eb151740' => 'zma', 'Zm00001eb292360' => 'zma', 'Zm00001eb301640' => 'zma' ) $gf_id = 'HOM05D000856' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000856' ) $data_identifier = 'HOM05D000856' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 13, 'ath' => (int) 10, 'atr' => (int) 1, 'acertr' => (int) 8, 'cqu' => (int) 6, 'bca' => (int) 21, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 11, 'car' => (int) 9, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 8, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 5, 'fan' => (int) 16, 'fve' => (int) 6, 'gma' => (int) 11, 'ghi' => (int) 19, 'gra' => (int) 9, 'vvi' => (int) 7, 'han' => (int) 17, 'cav' => (int) 5, 'hma' => (int) 2, 'vpl' => (int) 2, 'sun' => (int) 7, 'lal' => (int) 9, 'lja' => (int) 5, 'lonja' => (int) 9, 'lsa' => (int) 5, 'mes' => (int) 8, 'mpo' => (int) 3, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 10, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 15, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 9, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 9, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 6, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 5, 'spa' => (int) 10, 'tar' => (int) 10, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 11, 'tpr' => (int) 11, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 4, 'vmu' => (int) 7, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb301640' $species_info = array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ) $local_species = 'sly' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000856', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p00010' => 'bna', 'A03p04160' => 'bna', 'A03p17160' => 'bna', 'A04p23370' => 'bna', 'A05p14860' => 'bna', 'A08p37020' => 'bna', 'A09p08050' => 'bna', 'A09p66800' => 'bna', 'A09p67940' => 'bna', 'A10p02680' => 'bna', 'A10p05320' => 'bna', 'Aa31LG1G20560' => 'aar', 'Aa31LG1G20610' => 'aar', 'Aa31LG1G7810' => 'aar', 'Aa31LG5G3590' => 'aar', 'Aa31LG5G6140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3819' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4683' => 'aag', 'Actinidia04480' => 'ach', 'Actinidia05466' => 'ach', 'Actinidia08445' => 'ach', 'Actinidia21170' => 'ach', 'Actinidia24812' => 'ach', 'Actinidia24951' => 'ach', 'Actinidia40088' => 'ach', 'Ah.02g111660' => 'amhyb', 'Ah.11g048900' => 'amhyb', 'Ah.11g049910' => 'amhyb', 'AL1G13870' => 'aly', 'AL1G13880' => 'aly', 'AL1G16760' => 'aly', 'AL390U10020' => 'aly', 'AL4G25520' => 'aly', 'AL6G19890' => 'aly', 'AL6G19900' => 'aly', 'AL6G19910' => 'aly', 'AL8G40100' => 'aly', 'Aqoxy2G03562' => 'aox', 'Aqoxy5G00316' => 'aox', 'Aqoxy5G00926' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1628KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1H403S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2FU6SJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.882I6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8YRY2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YN1SN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AF70II' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZA8L1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F916KL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHRD8H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KTZ8QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S22EMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8M29T' => 'arhy', 'AT1G04270' => 'ath', 'AT1G04280' => 'ath', 'AT1G06750' => 'ath', 'AT1G33850' => 'ath', 'AT2G30630' => 'ath', 'AT5G09490' => 'ath', 'AT5G09500' => 'ath', 'AT5G09510' => 'ath', 'AT5G43640' => 'ath', 'AT5G63070' => 'ath', 'ATR0605G315' => 'atr', 'Atru.chr11.175' => 'acertr', 'Atru.chr11.653' => 'acertr', 'Atru.chr3.1616' => 'acertr', 'Atru.chr4.2230' => 'acertr', 'Atru.chr4.2232' => 'acertr', 'Atru.chr5.1598' => 'acertr', 'Atru.chr5.1600' => 'acertr', 'Atru.chr5.2188' => 'acertr', 'AUR62008326' => 'cqu', 'AUR62011922' => 'cqu', 'AUR62011924' => 'cqu', 'AUR62021771' => 'cqu', 'AUR62032237' => 'cqu', 'AUR62032240' => 'cqu', 'BcaB01g05572' => 'bca', 'BcaB02g10337' => 'bca', 'BcaB04g19944' => 'bca', 'BcaB05g21548' => 'bca', 'BcaB05g21549' => 'bca', 'BcaB05g23227' => 'bca', 'BcaB06g26256' => 'bca', 'BcaB06g26257' => 'bca', 'BcaB06g28379' => 'bca', 'BcaC02g11159' => 'bca', 'BcaC03g13258' => 'bca', 'BcaC03g13259' => 'bca', 'BcaC05g24456' => 'bca', 'BcaC05g24457' => 'bca', 'BcaC07g36922' => 'bca', 'BcaC07g36923' => 'bca', 'BcaC07g42050' => 'bca', 'BcaC07g42176' => 'bca', 'BcaC07g42195' => 'bca', 'BcaC07g42196' => 'bca', 'BcaNung06674' => 'bca', 'BolC2t06351H' => 'bol', 'BolC2t06352H' => 'bol', 'BolC3t12993H' => 'bol', 'BolC4t23525H' => 'bol', 'BolC4t27475H' => 'bol', 'BolC5t29025H' => 'bol', 'BolC5t29026H' => 'bol', 'BolC8t46898H' => 'bol', 'BolC8t46899H' => 'bol', 'BolC8t52630H' => 'bol', 'BolC8t52765H' => 'bol', 'BolC9t53824H' => 'bol', 'BraA03t09760Z' => 'bra', 'BraA03t10990Z' => 'bra', 'BraA05t20413Z' => 'bra', 'BraA08t35602Z' => 'bra', 'BraA09t36458Z' => 'bra', 'BraA09t42018Z' => 'bra', 'BraA09t42129Z' => 'bra', 'BraA10t42536Z' => 'bra', 'BraA10t42537Z' => 'bra', 'C01p10690' => 'bna', 'C02p03890' => 'bna', 'C02p03900' => 'bna', 'C03p04620' => 'bna', 'C04p19870' => 'bna', 'C04p59670' => 'bna', 'C05p02460' => 'bna', 'C05p02470' => 'bna', 'C08p00980' => 'bna', 'C08p00990' => 'bna', 'C08p51030' => 'bna', 'C08p52360' => 'bna', 'C09p09120' => 'bna', 'CAN.G19.15' => 'can', 'CAN.G251.10' => 'can', 'CAN.G251.9' => 'can', 'CAN.G398.24' => 'can', 'CAN.G410.32' => 'can', 'CAN.G881.2' => 'can', 'CANSAT01G3025' => 'cansat', 'CANSAT78G1211' => 'cansat', 'CANSAT78G1218' => 'cansat', 'CANSAT78G1521' => 'cansat', 'CANSAT78G1670' => 'cansat', 'CARHR003600' => 'chi', 'CARHR003610' => 'chi', 'CARHR006290' => 'chi', 'CARHR006430' => 'chi', 'CARHR124110' => 'chi', 'CARHR203870' => 'chi', 'CARHR203880' => 'chi', 'CARHR203890' => 'chi', 'CARHR276880' => 'chi', 'Carub.0001s0346' => 'cru', 'Carub.0001s0347' => 'cru', 'Carub.0001s0607' => 'cru', 'Carub.0003s2768' => 'cru', 'Carub.0003s2769' => 'cru', 'Carub.0004s1178' => 'cru', 'Carub.0006s0806' => 'cru', 'Carub.0006s0807' => 'cru', 'Carub.0006s0808' => 'cru', 'Carub.0008s0501' => 'cru', 'Carub.0008s2379' => 'cru', 'Ca_08655_v3' => 'car', 'Ca_08922_v3' => 'car', 'Ca_08923_v3' => 'car', 'Ca_09119_v3' => 'car', 'Ca_09703_v3' => 'car', 'Ca_09705_v3' => 'car', 'Ca_09835_v3' => 'car', 'Ca_26403_v3' => 'car', 'Ca_30719_v3' => 'car', 'CBR_g17958' => 'cbr', 'CBR_g40516' => 'cbr', 'Cc00_g05350' => 'ccan', 'Cc01_g18690' => 'ccan', 'Cc03_g04830' => 'ccan', 'Cc03_g04850' => 'ccan', 'CDE02G4469' => 'cde', 'CDE06G0883' => 'cde', 'CDE06G1295' => 'cde', 'CDE06G1390' => 'cde', 'CDE07G0584' => 'cde', 'CDE07G1084' => 'cde', 'CDE08G1259' => 'cde', 'Cfa002341' => 'cfa', 'Cfa024337' => 'cfa', 'Ciclev10004749m.g' => 'ccl', 'Ciclev10006127m.g' => 'ccl', 'Ciclev10019720m.g' => 'ccl', 'Ciclev10022652m.g' => 'ccl', 'CiPaw.01G190400' => 'cil', 'CiPaw.01G190500' => 'cil', 'CiPaw.02G116400' => 'cil', 'CiPaw.02G116500' => 'cil', 'CiPaw.04G183000' => 'cil', 'CiPaw.04G183300' => 'cil', 'ClCG05G004610' => 'cla', 'ClCG05G004620' => 'cla', 'ClCG06G006730' => 'cla', 'ClCG06G006740' => 'cla', 'ClCG11G003690' => 'cla', 'COL.COLO4_08276' => 'col', 'COL.COLO4_08277' => 'col', 'COL.COLO4_15787' => 'col', 'COL.COLO4_15789' => 'col', 'Cpa.g.c44815' => 'cpa', 'Cpa.g.sc52.144' => 'cpa', 'Cpa.g.sc58.46' => 'cpa', 'Cpa.g.sc58.47' => 'cpa', 'Cre08.g360900' => 'cre', 'CsaV3_2G013030' => 'csa', 'CsaV3_2G013050' => 'csa', 'CsaV3_2G015620' => 'csa', 'CsaV3_3G012590' => 'csa', 'CsaV3_3G012600' => 'csa', 'CSS0001641' => 'camsi', 'CSS0008310' => 'camsi', 'CSS0013011' => 'camsi', 'CSS0017147' => 'camsi', 'CSS0022970' => 'camsi', 'CSS0025655' => 'camsi', 'CSS0028665' => 'camsi', 'CSS0029117' => 'camsi', 'CSS0032024' => 'camsi', 'CSS0039681' => 'camsi', 'CSS0046516' => 'camsi', 'CSS0050307' => 'camsi', 'DCAR_005871' => 'dca', 'DCAR_007342' => 'dca', 'DCAR_024228' => 'dca', 'DCAR_027277' => 'dca', 'DCAR_030718' => 'dca', 'Dinv20287' => 'din', 'Dinv22461' => 'din', 'Dinv22464' => 'din', 'Dinv29912' => 'din', 'Dinv29913' => 'din', 'Dinv34580' => 'din', 'Dinv34582' => 'din', 'Dinv44632' => 'din', 'Duzib052G0266' => 'dzi', 'Duzib133G0907' => 'dzi', 'Duzib133G1034' => 'dzi', 'Duzib138G0207' => 'dzi', 'Duzib138G0491' => 'dzi', 'Duzib151G0812' => 'dzi', 'Duzib151G1166' => 'dzi', 'Duzib168G0192' => 'dzi', 'Duzib211G0077' => 'dzi', 'Duzib212G0429' => 'dzi', 'Duzib212G0472' => 'dzi', 'ECA233G2617' => 'eca', 'ECA236G4188' => 'eca', 'ECA240G0936' => 'eca', 'ECA240G1129' => 'eca', 'ECA247G0623' => 'eca', 'EL10Ac5g10451' => 'bvu', 'EL10Ac5g10453' => 'bvu', 'EL10Ac5g10894' => 'bvu', 'Eucgr.H00192' => 'egr', 'Eucgr.H00193' => 'egr', 'Eucgr.H00194' => 'egr', 'Eucgr.J01562' => 'egr', 'Eucgr.K03301' => 'egr', 'FAN02G0632' => 'fan', 'FAN05G5378' => 'fan', 'FAN09G3247' => 'fan', 'FAN12G0435' => 'fan', 'FAN12G2426' => 'fan', 'FAN14G1707' => 'fan', 'FAN14G4725' => 'fan', 'FAN15G2071' => 'fan', 'FAN17G3065' => 'fan', 'FAN19G1376' => 'fan', 'FAN20G0354' => 'fan', 'FAN20G2429' => 'fan', 'FAN20G2658' => 'fan', 'FAN24G2343' => 'fan', 'FAN27G2362' => 'fan', 'FAN28G1765' => 'fan', 'FvH4_1g16020' => 'fve', 'FvH4_2g04890' => 'fve', 'FvH4_2g22270' => 'fve', 'FvH4_4g02630' => 'fve', 'FvH4_4g02640' => 'fve', 'FvH4_6g02650' => 'fve', 'Glyma.02G140600' => 'gma', 'Glyma.03G159900' => 'gma', 'Glyma.05G234800' => 'gma', 'Glyma.07G269600' => 'gma', 'Glyma.08G042300' => 'gma', 'Glyma.10G033500' => 'gma', 'Glyma.10G185200' => 'gma', 'Glyma.17G004300' => 'gma', 'Glyma.19G161900' => 'gma', 'Glyma.20G205100' => 'gma', 'Glyma.20G205200' => 'gma', 'Gohir.A01G139101' => 'ghi', 'Gohir.A02G035600' => 'ghi', 'Gohir.A02G117901' => 'ghi', 'Gohir.A07G210100' => 'ghi', 'Gohir.A07G210200' => 'ghi', 'Gohir.A08G061100' => 'ghi', 'Gohir.A09G223000' => 'ghi', 'Gohir.A09G223100' => 'ghi', 'Gohir.A10G113900' => 'ghi', 'Gohir.A10G114000' => 'ghi', 'Gohir.D02G042300' => 'ghi', 'Gohir.D07G216100' => 'ghi', 'Gohir.D07G216200' => 'ghi', 'Gohir.D08G070400' => 'ghi', 'Gohir.D09G225000' => 'ghi', 'Gohir.D09G225100' => 'ghi', 'Gohir.D10G152300' => 'ghi', 'Gohir.D10G153200' => 'ghi', 'Gohir.D11G133701' => 'ghi', 'Gorai.004G074100' => 'gra', 'Gorai.005G046800' => 'gra', 'Gorai.006G246500' => 'gra', 'Gorai.006G246600' => 'gra', 'Gorai.007G142900' => 'gra', 'Gorai.011G171000' => 'gra', 'Gorai.011G171100' => 'gra', 'Gorai.013G104300' => 'gra', 'Gorai.013G104400' => 'gra', 'GSVIVG01000754001' => 'vvi', 'GSVIVG01000756001' => 'vvi', 'GSVIVG01010903001' => 'vvi', 'GSVIVG01017623001' => 'vvi', 'GSVIVG01018113001' => 'vvi', 'GSVIVG01018116001' => 'vvi', 'GSVIVG01018118001' => 'vvi', 'HanXRQChr03g0076211' => 'han', 'HanXRQChr03g0092431' => 'han', 'HanXRQChr03g0092441' => 'han', 'HanXRQChr03g0092591' => 'han', 'HanXRQChr03g0092671' => 'han', 'HanXRQChr03g0092681' => 'han', 'HanXRQChr03g0092691' => 'han', 'HanXRQChr03g0092701' => 'han', 'HanXRQChr03g0092721' => 'han', 'HanXRQChr03g0092731' => 'han', 'HanXRQChr04g0113681' => 'han', 'HanXRQChr10g0281371' => 'han', 'HanXRQChr11g0337141' => 'han', 'HanXRQChr13g0424521' => 'han', 'HanXRQChr13g0424531' => 'han', 'HanXRQChr13g0424541' => 'han', 'HanXRQChr16g0498221' => 'han', 'Haze_04377' => 'cav', 'Haze_11298' => 'cav', 'Haze_24547' => 'cav', 'Haze_24550' => 'cav', 'Haze_26587' => 'cav', 'Hma1.2p1_0650F.1_g195410' => 'hma', 'Hma1.2p1_0893F.1_g233470' => 'hma', 'HPP92_006508' => 'vpl', 'HPP92_024780' => 'vpl', 'Hund02688' => 'sun', 'Hund09380' => 'sun', 'Hund09381' => 'sun', 'Hund09832' => 'sun', 'Hund09833' => 'sun', 'Hund11351' => 'sun', 'Hund11513' => 'sun', 'Lalb_Chr06g0162591' => 'lal', 'Lalb_Chr06g0162601' => 'lal', 'Lalb_Chr06g0169321' => 'lal', 'Lalb_Chr09g0330951' => 'lal', 'Lalb_Chr16g0387631' => 'lal', 'Lalb_Chr21g0306241' => 'lal', 'Lalb_Chr25g0290051' => 'lal', 'Lalb_Chr25g0290061' => 'lal', 'Lalb_Chr25g0290071' => 'lal', 'Lj1g0003876' => 'lja', 'Lj1P1207T36' => 'lonja', 'Lj2C1156G12' => 'lonja', 'Lj3A793G39' => 'lonja', 'Lj3C580G2' => 'lonja', 'Lj3C780G2' => 'lonja', 'Lj3C780T4' => 'lonja', 'Lj3C793G9' => 'lonja', 'Lj4g0012960' => 'lja', 'Lj5g0021252' => 'lja', 'Lj5g0021484' => 'lja', 'Lj5g0024528' => 'lja', 'Lj6A399T12' => 'lonja', 'Lj6A656G65' => 'lonja', 'Lsat_1_v5_gn_3_125500' => 'lsa', 'Lsat_1_v5_gn_3_125540' => 'lsa', 'Lsat_1_v5_gn_5_72701' => 'lsa', 'Lsat_1_v5_gn_8_91560' => 'lsa', 'Lsat_1_v5_gn_9_9640' => 'lsa', 'Manes.01G200600' => 'mes', 'Manes.01G200700' => 'mes', 'Manes.03G168900' => 'mes', 'Manes.03G169000' => 'mes', 'Manes.05G085801' => 'mes', 'Manes.05G086200' => 'mes', 'Manes.15G036700' => 'mes', 'Manes.15G036900' => 'mes', 'Mapoly0004s0172' => 'mpo', 'Mapoly0023s0001' => 'mpo', 'Mapoly0142s0012' => 'mpo', 'MBI01_g32854_MAGBIO' => 'mbi', 'MBI11_g24427_MAGBIO' => 'mbi', 'MBI11_g47319_MAGBIO' => 'mbi', 'MCO01G433' => 'mco', 'MD00G1187800' => 'mdo', 'MD04G1226500' => 'mdo', 'MD05G1203900' => 'mdo', 'MD10G1191100' => 'mdo', 'MD12G1243500' => 'mdo', 'MD13G1207000' => 'mdo', 'MD13G1207100' => 'mdo', 'MD16G1208600' => 'mdo', 'Medtr1g050352' => 'mtr', 'Medtr1g070385' => 'mtr', 'Medtr1g070450' => 'mtr', 'Medtr1g075200' => 'mtr', 'Medtr1g075250' => 'mtr', 'Medtr1g075260' => 'mtr', 'Medtr1g475250' => 'mtr', 'Medtr4g075450' => 'mtr', 'Medtr7g096300' => 'mtr', 'Medtr8g105110' => 'mtr', 'MELO3C006470.2' => 'cme', 'MELO3C006471.2' => 'cme', 'MELO3C020772.2' => 'cme', 'MELO3C026780.2' => 'cme', 'MELO3C026781.2' => 'cme', 'Migut.D00390' => 'egut', 'Migut.G00435' => 'egut', 'Migut.G00436' => 'egut', 'Migut.G00718' => 'egut', 'MSTRG.21891' => 'ama', 'MSTRG.26910' => 'ama', 'MSTRG.4099' => 'ama', 'MSTRG.9925' => 'ama', 'Nitab4.5_0000165g0010' => 'nta', 'Nitab4.5_0000209g0180' => 'nta', 'Nitab4.5_0000244g0440' => 'nta', 'Nitab4.5_0000525g0220' => 'nta', 'Nitab4.5_0001597g0020' => 'nta', 'Nitab4.5_0001878g0040' => 'nta', 'Nitab4.5_0001878g0060' => 'nta', 'Nitab4.5_0002838g0100' => 'nta', 'Nitab4.5_0002838g0120' => 'nta', 'Nitab4.5_0004798g0030' => 'nta', 'Nitab4.5_0005420g0010' => 'nta', 'Nitab4.5_0005507g0010' => 'nta', 'Nitab4.5_0005574g0020' => 'nta', 'Nitab4.5_0005838g0010' => 'nta', 'Nitab4.5_0010580g0020' => 'nta', 'Nn1g02599' => 'nnu', 'Nn1g02608' => 'nnu', 'Nn3g17742' => 'nnu', 'Nn3g19534' => 'nnu', 'Nn3g19535' => 'nnu', 'Oeu008790.1' => 'oeu', 'Oeu008792.1' => 'oeu', 'Oeu032590.1' => 'oeu', 'Oeu035349.1' => 'oeu', 'Oeu049791.1' => 'oeu', 'Os01g0774500' => 'osa', 'Os03g0628800' => 'osa', 'Os03g0798600' => 'osa', 'Os05g0508800' => 'osa', 'Peaxi162Scf00036g02018' => 'pax', 'Peaxi162Scf00578g00032' => 'pax', 'Peaxi162Scf00578g00317' => 'pax', 'Peaxi162Scf00785g00114' => 'pax', 'Peaxi162Scf00813g00119' => 'pax', 'Peaxi162Scf00906g00227' => 'pax', 'PGR004G0875' => 'pgr', 'PGR004G2424' => 'pgr', 'PGR031G1239' => 'pgr', 'PGR031G2474' => 'pgr', 'PGR044G0423' => 'pgr', 'PGSC0003DMG400001128' => 'stu', 'PGSC0003DMG400007336' => 'stu', 'PGSC0003DMG400016318' => 'stu', 'PGSC0003DMG400016319' => 'stu', 'PGSC0003DMG400018074' => 'stu', 'Phvul.001G157700' => 'pvu', 'Phvul.002G148550' => 'pvu', 'Phvul.002G320200' => 'pvu', 'Phvul.003G089200' => 'pvu', 'Phvul.007G126000' => 'pvu', 'Phvul.007G126100' => 'pvu', 'Phvul.007G178000' => 'pvu', 'Phvul.007G178200' => 'pvu', 'Potri.002G043000' => 'ptr', 'Potri.002G043200' => 'ptr', 'Potri.003G123750' => 'ptr', 'Potri.005G055401' => 'ptr', 'Potri.005G219700' => 'ptr', 'Potri.005G220000' => 'ptr', 'Potri.008G161901' => 'ptr', 'Potri.008G162000' => 'ptr', 'Potri.008G162400' => 'ptr', 'Potri.010G076900' => 'ptr', 'Pp3c12_9180' => 'ppa', 'Pp3c13_19770' => 'ppa', 'Pp3c14_22950' => 'ppa', 'Pp3c16_12160' => 'ppa', 'Pp3c27_7820' => 'ppa', 'Pp3c2_3490' => 'ppa', 'Pp3c3_23700' => 'ppa', 'Pp3c3_36520' => 'ppa', 'Pp3c4_15250' => 'ppa', 'PRCOL_00007002' => 'pco', 'Prupe.1G030600' => 'ppe', 'Prupe.1G030700' => 'ppe', 'Prupe.6G345200' => 'ppe', 'Prupe.8G230300' => 'ppe', 'Prupe.8G230500' => 'ppe', 'Psat3g059600' => 'psa', 'Psat5g200920' => 'psa', 'Psat6g056440' => 'psa', 'Psat6g057360' => 'psa', 'Psat6g134120' => 'psa', 'Psat6g134160' => 'psa', 'Psat7g008640' => 'psa', 'Psat7g185240' => 'psa', 'PSO017G1330' => 'pso', 'PSO063G6097' => 'pso', 'PSO170G0835' => 'pso', 'PSO170G2499' => 'pso', 'PSO210G5058' => 'pso', 'PSO210G6154' => 'pso', 'PSO585G0031' => 'pso', 'PSO832G0264' => 'pso', 'PSO832G4288' => 'pso', 'QL03p027355' => 'qlo', 'QL03p027430' => 'qlo', 'QL04p081380' => 'qlo', 'QL06p015642' => 'qlo', 'QL06p015650' => 'qlo', 'QL06p015686' => 'qlo', 'QL12p042927' => 'qlo', 'QL93p1863_0035' => 'qlo', 'RcHm_v2.0_Chr3g0450581' => 'rch', 'RcHm_v2.0_Chr4g0390371' => 'rch', 'RcHm_v2.0_Chr4g0390381' => 'rch', 'RcHm_v2.0_Chr4g0390491' => 'rch', 'RcHm_v2.0_Chr4g0390501' => 'rch', 'RcHm_v2.0_Chr6g0289231' => 'rch', 'Rhsim04G0190400' => 'rsi', 'Rhsim04G0190500' => 'rsi', 'Rhsim04G0190600' => 'rsi', 'Rhsim13G0031400' => 'rsi', 'Rhsim13G0165600' => 'rsi', 'RhsimUnG0114600' => 'rsi', 'RhsimUnG0114700' => 'rsi', 'Sabra02G0034800' => 'sbr', 'Sabra02G0035100' => 'sbr', 'Sabra05G0168600' => 'sbr', 'Sabra05G0168800' => 'sbr', 'Sabra08G0123700' => 'sbr', 'Sabra10G0031900' => 'sbr', 'Sabra13G0039000' => 'sbr', 'SalBow2G0782' => 'sbo', 'SalBow2G1403' => 'sbo', 'SalBow4G0074' => 'sbo', 'SalBow4G2635' => 'sbo', 'SalBow5G3010' => 'sbo', 'Sc05g0000870' => 'sci', 'Sc05g0000890' => 'sci', 'Sc13g0005000' => 'sci', 'Sc13g0005030' => 'sci', 'Sc19g0003790' => 'sci', 'Sc19g0003800' => 'sci', 'Sed0003467' => 'sed', 'Sed0009355' => 'sed', 'Sed0009894' => 'sed', 'Sed0011972' => 'sed', 'Sed0021483' => 'sed', 'Sed0021750' => 'sed', 'Sed0026279' => 'sed', 'SEGI_05312' => 'sgi', 'SEGI_10112' => 'sgi', 'SEGI_15835' => 'sgi', 'SEGI_30386' => 'sgi', 'SEGI_34122' => 'sgi', 'SEGI_35063' => 'sgi', 'SGA_v2.0_scaffold101G29794' => 'sas', 'SGA_v2.0_scaffold1G00573' => 'sas', 'SGA_v2.0_scaffold79G25637' => 'sas', 'SGA_v2.0_scaffold88G27283' => 'sas', 'SGA_v2.0_scaffold88G27285' => 'sas', 'SGA_v2.0_scaffold88G27331' => 'sas', 'SHI09937' => 'shi', 'SMO119G0302' => 'smo', 'SMO137G0231' => 'smo', 'SMO367G1151' => 'smo', 'Solyc02g082000.3' => 'sly', 'Solyc06g031670.3' => 'sly', 'Solyc06g053810.3' => 'sly', 'Solyc07g025457.1' => 'sly', 'Solyc08g059740.1' => 'sly', 'Solyc08g059750.3' => 'sly', 'Solyc09g083370.3' => 'sly', 'Solyc12g038950.3' => 'sly', 'Sopen02g026630' => 'spe', 'Sopen06g018930' => 'spe', 'Sopen06g018940' => 'spe', 'Sopen08g009460' => 'spe', 'Sopen09g032290' => 'spe', 'Sp1g03080' => 'spa', 'Sp1g03090' => 'spa', 'Sp1g05480' => 'spa', 'Sp2g07860' => 'spa', 'Sp2g08430' => 'spa', 'Sp2g08440' => 'spa', 'Sp2g26200' => 'spa', 'Sp4g13170' => 'spa', 'Sp6g33840' => 'spa', 'SpUn1204_0010' => 'spa', 'TAR365G0908' => 'tar', 'TAR381G1270' => 'tar', 'TAR381G1651' => 'tar', 'TAR625G1131' => 'tar', 'TAR633G0962' => 'tar', 'TAR633G1729' => 'tar', 'TAR633G1864' => 'tar', 'TAR636G0221' => 'tar', 'TAR636G0314' => 'tar', 'TAR636G3202' => 'tar', 'THA.LOC104800805' => 'tha', 'THA.LOC104801096' => 'tha', 'THA.LOC104801555' => 'tha', 'THA.LOC104808491' => 'tha', 'THA.LOC104808595' => 'tha', 'THA.LOC104815985' => 'tha', 'THA.LOC104822250' => 'tha', 'THA.LOC104826071' => 'tha', 'Thecc.01G265200' => 'tca', 'Thecc.01G265300' => 'tca', 'Thecc.01G265700' => 'tca', 'Thecc.03G109100' => 'tca', 'Thecc.04G245900' => 'tca', 'Thecc.04G246000' => 'tca', 'Thhalv10003334m.g' => 'esa', 'Thhalv10005508m.g' => 'esa', 'Thhalv10005643m.g' => 'esa', 'Thhalv10007316m.g' => 'esa', 'Thhalv10009006m.g' => 'esa', 'Thhalv10009309m.g' => 'esa', 'Thhalv10014917m.g' => 'esa', 'Thhalv10014919m.g' => 'esa', 'Thhalv10015393m.g' => 'esa', 'Thhalv10016515m.g' => 'esa', 'Thhalv10029242m.g' => 'esa', 'TPR.G16654' => 'tpr', 'TPR.G20589' => 'tpr', 'TPR.G23029' => 'tpr', 'TPR.G27731' => 'tpr', 'TPR.G28889' => 'tpr', 'TPR.G28899' => 'tpr', 'TPR.G30846' => 'tpr', 'TPR.G5452' => 'tpr', 'TPR.G5713' => 'tpr', 'TPR.G9046' => 'tpr', 'TPR.G9061' => 'tpr', 'TWI09G1075' => 'twi', 'TWI12G0806' => 'twi', 'TWI18G0108' => 'twi', 'TWI53G1361' => 'twi', 'TWI73G0185' => 'twi', 'TWI73G0427' => 'twi', 'unitig_37.g12001' => 'ugi', 'unitig_747.g21660' => 'ugi', 'unitig_748.g7232' => 'ugi', 'unitig_748.g7315' => 'ugi', 'unitig_85.g27262' => 'ugi', 'unitig_92.g28220' => 'ugi', 'vmacro02632' => 'vma', 'vmacro08410' => 'vma', 'vmacro08411' => 'vma', 'vmacro15407' => 'vma', 'VMungo0251G3619' => 'vmu', 'VMungo0720G1204' => 'vmu', 'VMungo0720G1918' => 'vmu', 'VMungo0720G2387' => 'vmu', 'VMungo0720G2961' => 'vmu', 'VMungo1215G2154' => 'vmu', 'VMungo1383G2411' => 'vmu', 'Zm00001eb051130' => 'zma', 'Zm00001eb116830' => 'zma', 'Zm00001eb116850' => 'zma', 'Zm00001eb151740' => 'zma', 'Zm00001eb292360' => 'zma', 'Zm00001eb301640' => 'zma' ), 'gf_id' => 'HOM05D000856', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000856' ), 'data_identifier' => 'HOM05D000856', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000856', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p00010' => 'bna', 'A03p04160' => 'bna', 'A03p17160' => 'bna', 'A04p23370' => 'bna', 'A05p14860' => 'bna', 'A08p37020' => 'bna', 'A09p08050' => 'bna', 'A09p66800' => 'bna', 'A09p67940' => 'bna', 'A10p02680' => 'bna', 'A10p05320' => 'bna', 'Aa31LG1G20560' => 'aar', 'Aa31LG1G20610' => 'aar', 'Aa31LG1G7810' => 'aar', 'Aa31LG5G3590' => 'aar', 'Aa31LG5G6140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3819' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4683' => 'aag', 'Actinidia04480' => 'ach', 'Actinidia05466' => 'ach', 'Actinidia08445' => 'ach', 'Actinidia21170' => 'ach', 'Actinidia24812' => 'ach', 'Actinidia24951' => 'ach', 'Actinidia40088' => 'ach', 'Ah.02g111660' => 'amhyb', 'Ah.11g048900' => 'amhyb', 'Ah.11g049910' => 'amhyb', 'AL1G13870' => 'aly', 'AL1G13880' => 'aly', 'AL1G16760' => 'aly', 'AL390U10020' => 'aly', 'AL4G25520' => 'aly', 'AL6G19890' => 'aly', 'AL6G19900' => 'aly', 'AL6G19910' => 'aly', 'AL8G40100' => 'aly', 'Aqoxy2G03562' => 'aox', 'Aqoxy5G00316' => 'aox', 'Aqoxy5G00926' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1628KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1H403S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2FU6SJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.882I6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8YRY2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YN1SN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AF70II' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZA8L1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F916KL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHRD8H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KTZ8QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S22EMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8M29T' => 'arhy', 'AT1G04270' => 'ath', 'AT1G04280' => 'ath', 'AT1G06750' => 'ath', 'AT1G33850' => 'ath', 'AT2G30630' => 'ath', 'AT5G09490' => 'ath', 'AT5G09500' => 'ath', 'AT5G09510' => 'ath', 'AT5G43640' => 'ath', 'AT5G63070' => 'ath', 'ATR0605G315' => 'atr', 'Atru.chr11.175' => 'acertr', 'Atru.chr11.653' => 'acertr', 'Atru.chr3.1616' => 'acertr', 'Atru.chr4.2230' => 'acertr', 'Atru.chr4.2232' => 'acertr', 'Atru.chr5.1598' => 'acertr', 'Atru.chr5.1600' => 'acertr', 'Atru.chr5.2188' => 'acertr', 'AUR62008326' => 'cqu', 'AUR62011922' => 'cqu', 'AUR62011924' => 'cqu', 'AUR62021771' => 'cqu', 'AUR62032237' => 'cqu', 'AUR62032240' => 'cqu', 'BcaB01g05572' => 'bca', 'BcaB02g10337' => 'bca', 'BcaB04g19944' => 'bca', 'BcaB05g21548' => 'bca', 'BcaB05g21549' => 'bca', 'BcaB05g23227' => 'bca', 'BcaB06g26256' => 'bca', 'BcaB06g26257' => 'bca', 'BcaB06g28379' => 'bca', 'BcaC02g11159' => 'bca', 'BcaC03g13258' => 'bca', 'BcaC03g13259' => 'bca', 'BcaC05g24456' => 'bca', 'BcaC05g24457' => 'bca', 'BcaC07g36922' => 'bca', 'BcaC07g36923' => 'bca', 'BcaC07g42050' => 'bca', 'BcaC07g42176' => 'bca', 'BcaC07g42195' => 'bca', 'BcaC07g42196' => 'bca', 'BcaNung06674' => 'bca', 'BolC2t06351H' => 'bol', 'BolC2t06352H' => 'bol', 'BolC3t12993H' => 'bol', 'BolC4t23525H' => 'bol', 'BolC4t27475H' => 'bol', 'BolC5t29025H' => 'bol', 'BolC5t29026H' => 'bol', 'BolC8t46898H' => 'bol', 'BolC8t46899H' => 'bol', 'BolC8t52630H' => 'bol', 'BolC8t52765H' => 'bol', 'BolC9t53824H' => 'bol', 'BraA03t09760Z' => 'bra', 'BraA03t10990Z' => 'bra', 'BraA05t20413Z' => 'bra', 'BraA08t35602Z' => 'bra', 'BraA09t36458Z' => 'bra', 'BraA09t42018Z' => 'bra', 'BraA09t42129Z' => 'bra', 'BraA10t42536Z' => 'bra', 'BraA10t42537Z' => 'bra', 'C01p10690' => 'bna', 'C02p03890' => 'bna', 'C02p03900' => 'bna', 'C03p04620' => 'bna', 'C04p19870' => 'bna', 'C04p59670' => 'bna', 'C05p02460' => 'bna', 'C05p02470' => 'bna', 'C08p00980' => 'bna', 'C08p00990' => 'bna', 'C08p51030' => 'bna', 'C08p52360' => 'bna', 'C09p09120' => 'bna', 'CAN.G19.15' => 'can', 'CAN.G251.10' => 'can', 'CAN.G251.9' => 'can', 'CAN.G398.24' => 'can', 'CAN.G410.32' => 'can', 'CAN.G881.2' => 'can', 'CANSAT01G3025' => 'cansat', 'CANSAT78G1211' => 'cansat', 'CANSAT78G1218' => 'cansat', 'CANSAT78G1521' => 'cansat', 'CANSAT78G1670' => 'cansat', 'CARHR003600' => 'chi', 'CARHR003610' => 'chi', 'CARHR006290' => 'chi', 'CARHR006430' => 'chi', 'CARHR124110' => 'chi', 'CARHR203870' => 'chi', 'CARHR203880' => 'chi', 'CARHR203890' => 'chi', 'CARHR276880' => 'chi', 'Carub.0001s0346' => 'cru', 'Carub.0001s0347' => 'cru', 'Carub.0001s0607' => 'cru', 'Carub.0003s2768' => 'cru', 'Carub.0003s2769' => 'cru', 'Carub.0004s1178' => 'cru', 'Carub.0006s0806' => 'cru', 'Carub.0006s0807' => 'cru', 'Carub.0006s0808' => 'cru', 'Carub.0008s0501' => 'cru', 'Carub.0008s2379' => 'cru', 'Ca_08655_v3' => 'car', 'Ca_08922_v3' => 'car', 'Ca_08923_v3' => 'car', 'Ca_09119_v3' => 'car', 'Ca_09703_v3' => 'car', 'Ca_09705_v3' => 'car', 'Ca_09835_v3' => 'car', 'Ca_26403_v3' => 'car', 'Ca_30719_v3' => 'car', 'CBR_g17958' => 'cbr', 'CBR_g40516' => 'cbr', 'Cc00_g05350' => 'ccan', 'Cc01_g18690' => 'ccan', 'Cc03_g04830' => 'ccan', 'Cc03_g04850' => 'ccan', 'CDE02G4469' => 'cde', 'CDE06G0883' => 'cde', 'CDE06G1295' => 'cde', 'CDE06G1390' => 'cde', 'CDE07G0584' => 'cde', 'CDE07G1084' => 'cde', 'CDE08G1259' => 'cde', 'Cfa002341' => 'cfa', 'Cfa024337' => 'cfa', 'Ciclev10004749m.g' => 'ccl', 'Ciclev10006127m.g' => 'ccl', 'Ciclev10019720m.g' => 'ccl', 'Ciclev10022652m.g' => 'ccl', 'CiPaw.01G190400' => 'cil', 'CiPaw.01G190500' => 'cil', 'CiPaw.02G116400' => 'cil', 'CiPaw.02G116500' => 'cil', 'CiPaw.04G183000' => 'cil', 'CiPaw.04G183300' => 'cil', 'ClCG05G004610' => 'cla', 'ClCG05G004620' => 'cla', 'ClCG06G006730' => 'cla', 'ClCG06G006740' => 'cla', 'ClCG11G003690' => 'cla', 'COL.COLO4_08276' => 'col', 'COL.COLO4_08277' => 'col', 'COL.COLO4_15787' => 'col', 'COL.COLO4_15789' => 'col', 'Cpa.g.c44815' => 'cpa', 'Cpa.g.sc52.144' => 'cpa', 'Cpa.g.sc58.46' => 'cpa', 'Cpa.g.sc58.47' => 'cpa', 'Cre08.g360900' => 'cre', 'CsaV3_2G013030' => 'csa', 'CsaV3_2G013050' => 'csa', 'CsaV3_2G015620' => 'csa', 'CsaV3_3G012590' => 'csa', 'CsaV3_3G012600' => 'csa', 'CSS0001641' => 'camsi', 'CSS0008310' => 'camsi', 'CSS0013011' => 'camsi', 'CSS0017147' => 'camsi', 'CSS0022970' => 'camsi', 'CSS0025655' => 'camsi', 'CSS0028665' => 'camsi', 'CSS0029117' => 'camsi', 'CSS0032024' => 'camsi', 'CSS0039681' => 'camsi', 'CSS0046516' => 'camsi', 'CSS0050307' => 'camsi', 'DCAR_005871' => 'dca', 'DCAR_007342' => 'dca', 'DCAR_024228' => 'dca', 'DCAR_027277' => 'dca', 'DCAR_030718' => 'dca', 'Dinv20287' => 'din', 'Dinv22461' => 'din', 'Dinv22464' => 'din', 'Dinv29912' => 'din', 'Dinv29913' => 'din', 'Dinv34580' => 'din', 'Dinv34582' => 'din', 'Dinv44632' => 'din', 'Duzib052G0266' => 'dzi', 'Duzib133G0907' => 'dzi', 'Duzib133G1034' => 'dzi', 'Duzib138G0207' => 'dzi', 'Duzib138G0491' => 'dzi', 'Duzib151G0812' => 'dzi', 'Duzib151G1166' => 'dzi', 'Duzib168G0192' => 'dzi', 'Duzib211G0077' => 'dzi', 'Duzib212G0429' => 'dzi', 'Duzib212G0472' => 'dzi', 'ECA233G2617' => 'eca', 'ECA236G4188' => 'eca', 'ECA240G0936' => 'eca', 'ECA240G1129' => 'eca', 'ECA247G0623' => 'eca', 'EL10Ac5g10451' => 'bvu', 'EL10Ac5g10453' => 'bvu', 'EL10Ac5g10894' => 'bvu', 'Eucgr.H00192' => 'egr', 'Eucgr.H00193' => 'egr', 'Eucgr.H00194' => 'egr', 'Eucgr.J01562' => 'egr', 'Eucgr.K03301' => 'egr', 'FAN02G0632' => 'fan', 'FAN05G5378' => 'fan', 'FAN09G3247' => 'fan', 'FAN12G0435' => 'fan', 'FAN12G2426' => 'fan', 'FAN14G1707' => 'fan', 'FAN14G4725' => 'fan', 'FAN15G2071' => 'fan', 'FAN17G3065' => 'fan', 'FAN19G1376' => 'fan', 'FAN20G0354' => 'fan', 'FAN20G2429' => 'fan', 'FAN20G2658' => 'fan', 'FAN24G2343' => 'fan', 'FAN27G2362' => 'fan', 'FAN28G1765' => 'fan', 'FvH4_1g16020' => 'fve', 'FvH4_2g04890' => 'fve', 'FvH4_2g22270' => 'fve', 'FvH4_4g02630' => 'fve', 'FvH4_4g02640' => 'fve', 'FvH4_6g02650' => 'fve', 'Glyma.02G140600' => 'gma', 'Glyma.03G159900' => 'gma', 'Glyma.05G234800' => 'gma', 'Glyma.07G269600' => 'gma', 'Glyma.08G042300' => 'gma', 'Glyma.10G033500' => 'gma', 'Glyma.10G185200' => 'gma', 'Glyma.17G004300' => 'gma', 'Glyma.19G161900' => 'gma', 'Glyma.20G205100' => 'gma', 'Glyma.20G205200' => 'gma', 'Gohir.A01G139101' => 'ghi', 'Gohir.A02G035600' => 'ghi', 'Gohir.A02G117901' => 'ghi', 'Gohir.A07G210100' => 'ghi', 'Gohir.A07G210200' => 'ghi', 'Gohir.A08G061100' => 'ghi', 'Gohir.A09G223000' => 'ghi', 'Gohir.A09G223100' => 'ghi', 'Gohir.A10G113900' => 'ghi', 'Gohir.A10G114000' => 'ghi', 'Gohir.D02G042300' => 'ghi', 'Gohir.D07G216100' => 'ghi', 'Gohir.D07G216200' => 'ghi', 'Gohir.D08G070400' => 'ghi', 'Gohir.D09G225000' => 'ghi', 'Gohir.D09G225100' => 'ghi', 'Gohir.D10G152300' => 'ghi', 'Gohir.D10G153200' => 'ghi', 'Gohir.D11G133701' => 'ghi', 'Gorai.004G074100' => 'gra', 'Gorai.005G046800' => 'gra', 'Gorai.006G246500' => 'gra', 'Gorai.006G246600' => 'gra', 'Gorai.007G142900' => 'gra', 'Gorai.011G171000' => 'gra', 'Gorai.011G171100' => 'gra', 'Gorai.013G104300' => 'gra', 'Gorai.013G104400' => 'gra', 'GSVIVG01000754001' => 'vvi', 'GSVIVG01000756001' => 'vvi', 'GSVIVG01010903001' => 'vvi', 'GSVIVG01017623001' => 'vvi', 'GSVIVG01018113001' => 'vvi', 'GSVIVG01018116001' => 'vvi', 'GSVIVG01018118001' => 'vvi', 'HanXRQChr03g0076211' => 'han', 'HanXRQChr03g0092431' => 'han', 'HanXRQChr03g0092441' => 'han', 'HanXRQChr03g0092591' => 'han', 'HanXRQChr03g0092671' => 'han', 'HanXRQChr03g0092681' => 'han', 'HanXRQChr03g0092691' => 'han', 'HanXRQChr03g0092701' => 'han', 'HanXRQChr03g0092721' => 'han', 'HanXRQChr03g0092731' => 'han', 'HanXRQChr04g0113681' => 'han', 'HanXRQChr10g0281371' => 'han', 'HanXRQChr11g0337141' => 'han', 'HanXRQChr13g0424521' => 'han', 'HanXRQChr13g0424531' => 'han', 'HanXRQChr13g0424541' => 'han', 'HanXRQChr16g0498221' => 'han', 'Haze_04377' => 'cav', 'Haze_11298' => 'cav', 'Haze_24547' => 'cav', 'Haze_24550' => 'cav', 'Haze_26587' => 'cav', 'Hma1.2p1_0650F.1_g195410' => 'hma', 'Hma1.2p1_0893F.1_g233470' => 'hma', 'HPP92_006508' => 'vpl', 'HPP92_024780' => 'vpl', 'Hund02688' => 'sun', 'Hund09380' => 'sun', 'Hund09381' => 'sun', 'Hund09832' => 'sun', 'Hund09833' => 'sun', 'Hund11351' => 'sun', 'Hund11513' => 'sun', 'Lalb_Chr06g0162591' => 'lal', 'Lalb_Chr06g0162601' => 'lal', 'Lalb_Chr06g0169321' => 'lal', 'Lalb_Chr09g0330951' => 'lal', 'Lalb_Chr16g0387631' => 'lal', 'Lalb_Chr21g0306241' => 'lal', 'Lalb_Chr25g0290051' => 'lal', 'Lalb_Chr25g0290061' => 'lal', 'Lalb_Chr25g0290071' => 'lal', 'Lj1g0003876' => 'lja', 'Lj1P1207T36' => 'lonja', 'Lj2C1156G12' => 'lonja', 'Lj3A793G39' => 'lonja', 'Lj3C580G2' => 'lonja', 'Lj3C780G2' => 'lonja', 'Lj3C780T4' => 'lonja', 'Lj3C793G9' => 'lonja', 'Lj4g0012960' => 'lja', 'Lj5g0021252' => 'lja', 'Lj5g0021484' => 'lja', 'Lj5g0024528' => 'lja', 'Lj6A399T12' => 'lonja', 'Lj6A656G65' => 'lonja', 'Lsat_1_v5_gn_3_125500' => 'lsa', 'Lsat_1_v5_gn_3_125540' => 'lsa', 'Lsat_1_v5_gn_5_72701' => 'lsa', 'Lsat_1_v5_gn_8_91560' => 'lsa', 'Lsat_1_v5_gn_9_9640' => 'lsa', 'Manes.01G200600' => 'mes', 'Manes.01G200700' => 'mes', 'Manes.03G168900' => 'mes', 'Manes.03G169000' => 'mes', 'Manes.05G085801' => 'mes', 'Manes.05G086200' => 'mes', 'Manes.15G036700' => 'mes', 'Manes.15G036900' => 'mes', 'Mapoly0004s0172' => 'mpo', 'Mapoly0023s0001' => 'mpo', 'Mapoly0142s0012' => 'mpo', 'MBI01_g32854_MAGBIO' => 'mbi', 'MBI11_g24427_MAGBIO' => 'mbi', 'MBI11_g47319_MAGBIO' => 'mbi', 'MCO01G433' => 'mco', 'MD00G1187800' => 'mdo', 'MD04G1226500' => 'mdo', 'MD05G1203900' => 'mdo', 'MD10G1191100' => 'mdo', 'MD12G1243500' => 'mdo', 'MD13G1207000' => 'mdo', 'MD13G1207100' => 'mdo', 'MD16G1208600' => 'mdo', 'Medtr1g050352' => 'mtr', 'Medtr1g070385' => 'mtr', 'Medtr1g070450' => 'mtr', 'Medtr1g075200' => 'mtr', 'Medtr1g075250' => 'mtr', 'Medtr1g075260' => 'mtr', 'Medtr1g475250' => 'mtr', 'Medtr4g075450' => 'mtr', 'Medtr7g096300' => 'mtr', 'Medtr8g105110' => 'mtr', 'MELO3C006470.2' => 'cme', 'MELO3C006471.2' => 'cme', 'MELO3C020772.2' => 'cme', 'MELO3C026780.2' => 'cme', 'MELO3C026781.2' => 'cme', 'Migut.D00390' => 'egut', 'Migut.G00435' => 'egut', 'Migut.G00436' => 'egut', 'Migut.G00718' => 'egut', 'MSTRG.21891' => 'ama', 'MSTRG.26910' => 'ama', 'MSTRG.4099' => 'ama', 'MSTRG.9925' => 'ama', 'Nitab4.5_0000165g0010' => 'nta', 'Nitab4.5_0000209g0180' => 'nta', 'Nitab4.5_0000244g0440' => 'nta', 'Nitab4.5_0000525g0220' => 'nta', 'Nitab4.5_0001597g0020' => 'nta', 'Nitab4.5_0001878g0040' => 'nta', 'Nitab4.5_0001878g0060' => 'nta', 'Nitab4.5_0002838g0100' => 'nta', 'Nitab4.5_0002838g0120' => 'nta', 'Nitab4.5_0004798g0030' => 'nta', 'Nitab4.5_0005420g0010' => 'nta', 'Nitab4.5_0005507g0010' => 'nta', 'Nitab4.5_0005574g0020' => 'nta', 'Nitab4.5_0005838g0010' => 'nta', 'Nitab4.5_0010580g0020' => 'nta', 'Nn1g02599' => 'nnu', 'Nn1g02608' => 'nnu', 'Nn3g17742' => 'nnu', 'Nn3g19534' => 'nnu', 'Nn3g19535' => 'nnu', 'Oeu008790.1' => 'oeu', 'Oeu008792.1' => 'oeu', 'Oeu032590.1' => 'oeu', 'Oeu035349.1' => 'oeu', 'Oeu049791.1' => 'oeu', 'Os01g0774500' => 'osa', 'Os03g0628800' => 'osa', 'Os03g0798600' => 'osa', 'Os05g0508800' => 'osa', 'Peaxi162Scf00036g02018' => 'pax', 'Peaxi162Scf00578g00032' => 'pax', 'Peaxi162Scf00578g00317' => 'pax', 'Peaxi162Scf00785g00114' => 'pax', 'Peaxi162Scf00813g00119' => 'pax', 'Peaxi162Scf00906g00227' => 'pax', 'PGR004G0875' => 'pgr', 'PGR004G2424' => 'pgr', 'PGR031G1239' => 'pgr', 'PGR031G2474' => 'pgr', 'PGR044G0423' => 'pgr', 'PGSC0003DMG400001128' => 'stu', 'PGSC0003DMG400007336' => 'stu', 'PGSC0003DMG400016318' => 'stu', 'PGSC0003DMG400016319' => 'stu', 'PGSC0003DMG400018074' => 'stu', 'Phvul.001G157700' => 'pvu', 'Phvul.002G148550' => 'pvu', 'Phvul.002G320200' => 'pvu', 'Phvul.003G089200' => 'pvu', 'Phvul.007G126000' => 'pvu', 'Phvul.007G126100' => 'pvu', 'Phvul.007G178000' => 'pvu', 'Phvul.007G178200' => 'pvu', 'Potri.002G043000' => 'ptr', 'Potri.002G043200' => 'ptr', 'Potri.003G123750' => 'ptr', 'Potri.005G055401' => 'ptr', 'Potri.005G219700' => 'ptr', 'Potri.005G220000' => 'ptr', 'Potri.008G161901' => 'ptr', 'Potri.008G162000' => 'ptr', 'Potri.008G162400' => 'ptr', 'Potri.010G076900' => 'ptr', 'Pp3c12_9180' => 'ppa', 'Pp3c13_19770' => 'ppa', 'Pp3c14_22950' => 'ppa', 'Pp3c16_12160' => 'ppa', 'Pp3c27_7820' => 'ppa', 'Pp3c2_3490' => 'ppa', 'Pp3c3_23700' => 'ppa', 'Pp3c3_36520' => 'ppa', 'Pp3c4_15250' => 'ppa', 'PRCOL_00007002' => 'pco', 'Prupe.1G030600' => 'ppe', 'Prupe.1G030700' => 'ppe', 'Prupe.6G345200' => 'ppe', 'Prupe.8G230300' => 'ppe', 'Prupe.8G230500' => 'ppe', 'Psat3g059600' => 'psa', 'Psat5g200920' => 'psa', 'Psat6g056440' => 'psa', 'Psat6g057360' => 'psa', 'Psat6g134120' => 'psa', 'Psat6g134160' => 'psa', 'Psat7g008640' => 'psa', 'Psat7g185240' => 'psa', 'PSO017G1330' => 'pso', 'PSO063G6097' => 'pso', 'PSO170G0835' => 'pso', 'PSO170G2499' => 'pso', 'PSO210G5058' => 'pso', 'PSO210G6154' => 'pso', 'PSO585G0031' => 'pso', 'PSO832G0264' => 'pso', 'PSO832G4288' => 'pso', 'QL03p027355' => 'qlo', 'QL03p027430' => 'qlo', 'QL04p081380' => 'qlo', 'QL06p015642' => 'qlo', 'QL06p015650' => 'qlo', 'QL06p015686' => 'qlo', 'QL12p042927' => 'qlo', 'QL93p1863_0035' => 'qlo', 'RcHm_v2.0_Chr3g0450581' => 'rch', 'RcHm_v2.0_Chr4g0390371' => 'rch', 'RcHm_v2.0_Chr4g0390381' => 'rch', 'RcHm_v2.0_Chr4g0390491' => 'rch', 'RcHm_v2.0_Chr4g0390501' => 'rch', 'RcHm_v2.0_Chr6g0289231' => 'rch', 'Rhsim04G0190400' => 'rsi', 'Rhsim04G0190500' => 'rsi', 'Rhsim04G0190600' => 'rsi', 'Rhsim13G0031400' => 'rsi', 'Rhsim13G0165600' => 'rsi', 'RhsimUnG0114600' => 'rsi', 'RhsimUnG0114700' => 'rsi', 'Sabra02G0034800' => 'sbr', 'Sabra02G0035100' => 'sbr', 'Sabra05G0168600' => 'sbr', 'Sabra05G0168800' => 'sbr', 'Sabra08G0123700' => 'sbr', 'Sabra10G0031900' => 'sbr', 'Sabra13G0039000' => 'sbr', 'SalBow2G0782' => 'sbo', 'SalBow2G1403' => 'sbo', 'SalBow4G0074' => 'sbo', 'SalBow4G2635' => 'sbo', 'SalBow5G3010' => 'sbo', 'Sc05g0000870' => 'sci', 'Sc05g0000890' => 'sci', 'Sc13g0005000' => 'sci', 'Sc13g0005030' => 'sci', 'Sc19g0003790' => 'sci', 'Sc19g0003800' => 'sci', 'Sed0003467' => 'sed', 'Sed0009355' => 'sed', 'Sed0009894' => 'sed', 'Sed0011972' => 'sed', 'Sed0021483' => 'sed', 'Sed0021750' => 'sed', 'Sed0026279' => 'sed', 'SEGI_05312' => 'sgi', 'SEGI_10112' => 'sgi', 'SEGI_15835' => 'sgi', 'SEGI_30386' => 'sgi', 'SEGI_34122' => 'sgi', 'SEGI_35063' => 'sgi', 'SGA_v2.0_scaffold101G29794' => 'sas', 'SGA_v2.0_scaffold1G00573' => 'sas', 'SGA_v2.0_scaffold79G25637' => 'sas', 'SGA_v2.0_scaffold88G27283' => 'sas', 'SGA_v2.0_scaffold88G27285' => 'sas', 'SGA_v2.0_scaffold88G27331' => 'sas', 'SHI09937' => 'shi', 'SMO119G0302' => 'smo', 'SMO137G0231' => 'smo', 'SMO367G1151' => 'smo', 'Solyc02g082000.3' => 'sly', 'Solyc06g031670.3' => 'sly', 'Solyc06g053810.3' => 'sly', 'Solyc07g025457.1' => 'sly', 'Solyc08g059740.1' => 'sly', 'Solyc08g059750.3' => 'sly', 'Solyc09g083370.3' => 'sly', 'Solyc12g038950.3' => 'sly', 'Sopen02g026630' => 'spe', 'Sopen06g018930' => 'spe', 'Sopen06g018940' => 'spe', 'Sopen08g009460' => 'spe', 'Sopen09g032290' => 'spe', 'Sp1g03080' => 'spa', 'Sp1g03090' => 'spa', 'Sp1g05480' => 'spa', 'Sp2g07860' => 'spa', 'Sp2g08430' => 'spa', 'Sp2g08440' => 'spa', 'Sp2g26200' => 'spa', 'Sp4g13170' => 'spa', 'Sp6g33840' => 'spa', 'SpUn1204_0010' => 'spa', 'TAR365G0908' => 'tar', 'TAR381G1270' => 'tar', 'TAR381G1651' => 'tar', 'TAR625G1131' => 'tar', 'TAR633G0962' => 'tar', 'TAR633G1729' => 'tar', 'TAR633G1864' => 'tar', 'TAR636G0221' => 'tar', 'TAR636G0314' => 'tar', 'TAR636G3202' => 'tar', 'THA.LOC104800805' => 'tha', 'THA.LOC104801096' => 'tha', 'THA.LOC104801555' => 'tha', 'THA.LOC104808491' => 'tha', 'THA.LOC104808595' => 'tha', 'THA.LOC104815985' => 'tha', 'THA.LOC104822250' => 'tha', 'THA.LOC104826071' => 'tha', 'Thecc.01G265200' => 'tca', 'Thecc.01G265300' => 'tca', 'Thecc.01G265700' => 'tca', 'Thecc.03G109100' => 'tca', 'Thecc.04G245900' => 'tca', 'Thecc.04G246000' => 'tca', 'Thhalv10003334m.g' => 'esa', 'Thhalv10005508m.g' => 'esa', 'Thhalv10005643m.g' => 'esa', 'Thhalv10007316m.g' => 'esa', 'Thhalv10009006m.g' => 'esa', 'Thhalv10009309m.g' => 'esa', 'Thhalv10014917m.g' => 'esa', 'Thhalv10014919m.g' => 'esa', 'Thhalv10015393m.g' => 'esa', 'Thhalv10016515m.g' => 'esa', 'Thhalv10029242m.g' => 'esa', 'TPR.G16654' => 'tpr', 'TPR.G20589' => 'tpr', 'TPR.G23029' => 'tpr', 'TPR.G27731' => 'tpr', 'TPR.G28889' => 'tpr', 'TPR.G28899' => 'tpr', 'TPR.G30846' => 'tpr', 'TPR.G5452' => 'tpr', 'TPR.G5713' => 'tpr', 'TPR.G9046' => 'tpr', 'TPR.G9061' => 'tpr', 'TWI09G1075' => 'twi', 'TWI12G0806' => 'twi', 'TWI18G0108' => 'twi', 'TWI53G1361' => 'twi', 'TWI73G0185' => 'twi', 'TWI73G0427' => 'twi', 'unitig_37.g12001' => 'ugi', 'unitig_747.g21660' => 'ugi', 'unitig_748.g7232' => 'ugi', 'unitig_748.g7315' => 'ugi', 'unitig_85.g27262' => 'ugi', 'unitig_92.g28220' => 'ugi', 'vmacro02632' => 'vma', 'vmacro08410' => 'vma', 'vmacro08411' => 'vma', 'vmacro15407' => 'vma', 'VMungo0251G3619' => 'vmu', 'VMungo0720G1204' => 'vmu', 'VMungo0720G1918' => 'vmu', 'VMungo0720G2387' => 'vmu', 'VMungo0720G2961' => 'vmu', 'VMungo1215G2154' => 'vmu', 'VMungo1383G2411' => 'vmu', 'Zm00001eb051130' => 'zma', 'Zm00001eb116830' => 'zma', 'Zm00001eb116850' => 'zma', 'Zm00001eb151740' => 'zma', 'Zm00001eb292360' => 'zma', 'Zm00001eb301640' => 'zma' ) $gf_id = 'HOM05D000856' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000856' ) $data_identifier = 'HOM05D000856' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 13, 'ath' => (int) 10, 'atr' => (int) 1, 'acertr' => (int) 8, 'cqu' => (int) 6, 'bca' => (int) 21, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 11, 'car' => (int) 9, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 8, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 5, 'fan' => (int) 16, 'fve' => (int) 6, 'gma' => (int) 11, 'ghi' => (int) 19, 'gra' => (int) 9, 'vvi' => (int) 7, 'han' => (int) 17, 'cav' => (int) 5, 'hma' => (int) 2, 'vpl' => (int) 2, 'sun' => (int) 7, 'lal' => (int) 9, 'lja' => (int) 5, 'lonja' => (int) 9, 'lsa' => (int) 5, 'mes' => (int) 8, 'mpo' => (int) 3, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 10, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 15, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 9, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 9, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 6, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 5, 'spa' => (int) 10, 'tar' => (int) 10, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 11, 'tpr' => (int) 11, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 4, 'vmu' => (int) 7, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb301640' $species_info = array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ) $local_species = 'sly' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000856', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p00010' => 'bna', 'A03p04160' => 'bna', 'A03p17160' => 'bna', 'A04p23370' => 'bna', 'A05p14860' => 'bna', 'A08p37020' => 'bna', 'A09p08050' => 'bna', 'A09p66800' => 'bna', 'A09p67940' => 'bna', 'A10p02680' => 'bna', 'A10p05320' => 'bna', 'Aa31LG1G20560' => 'aar', 'Aa31LG1G20610' => 'aar', 'Aa31LG1G7810' => 'aar', 'Aa31LG5G3590' => 'aar', 'Aa31LG5G6140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3819' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4683' => 'aag', 'Actinidia04480' => 'ach', 'Actinidia05466' => 'ach', 'Actinidia08445' => 'ach', 'Actinidia21170' => 'ach', 'Actinidia24812' => 'ach', 'Actinidia24951' => 'ach', 'Actinidia40088' => 'ach', 'Ah.02g111660' => 'amhyb', 'Ah.11g048900' => 'amhyb', 'Ah.11g049910' => 'amhyb', 'AL1G13870' => 'aly', 'AL1G13880' => 'aly', 'AL1G16760' => 'aly', 'AL390U10020' => 'aly', 'AL4G25520' => 'aly', 'AL6G19890' => 'aly', 'AL6G19900' => 'aly', 'AL6G19910' => 'aly', 'AL8G40100' => 'aly', 'Aqoxy2G03562' => 'aox', 'Aqoxy5G00316' => 'aox', 'Aqoxy5G00926' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1628KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1H403S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2FU6SJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.882I6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8YRY2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YN1SN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AF70II' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZA8L1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F916KL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHRD8H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KTZ8QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S22EMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8M29T' => 'arhy', 'AT1G04270' => 'ath', 'AT1G04280' => 'ath', 'AT1G06750' => 'ath', 'AT1G33850' => 'ath', 'AT2G30630' => 'ath', 'AT5G09490' => 'ath', 'AT5G09500' => 'ath', 'AT5G09510' => 'ath', 'AT5G43640' => 'ath', 'AT5G63070' => 'ath', 'ATR0605G315' => 'atr', 'Atru.chr11.175' => 'acertr', 'Atru.chr11.653' => 'acertr', 'Atru.chr3.1616' => 'acertr', 'Atru.chr4.2230' => 'acertr', 'Atru.chr4.2232' => 'acertr', 'Atru.chr5.1598' => 'acertr', 'Atru.chr5.1600' => 'acertr', 'Atru.chr5.2188' => 'acertr', 'AUR62008326' => 'cqu', 'AUR62011922' => 'cqu', 'AUR62011924' => 'cqu', 'AUR62021771' => 'cqu', 'AUR62032237' => 'cqu', 'AUR62032240' => 'cqu', 'BcaB01g05572' => 'bca', 'BcaB02g10337' => 'bca', 'BcaB04g19944' => 'bca', 'BcaB05g21548' => 'bca', 'BcaB05g21549' => 'bca', 'BcaB05g23227' => 'bca', 'BcaB06g26256' => 'bca', 'BcaB06g26257' => 'bca', 'BcaB06g28379' => 'bca', 'BcaC02g11159' => 'bca', 'BcaC03g13258' => 'bca', 'BcaC03g13259' => 'bca', 'BcaC05g24456' => 'bca', 'BcaC05g24457' => 'bca', 'BcaC07g36922' => 'bca', 'BcaC07g36923' => 'bca', 'BcaC07g42050' => 'bca', 'BcaC07g42176' => 'bca', 'BcaC07g42195' => 'bca', 'BcaC07g42196' => 'bca', 'BcaNung06674' => 'bca', 'BolC2t06351H' => 'bol', 'BolC2t06352H' => 'bol', 'BolC3t12993H' => 'bol', 'BolC4t23525H' => 'bol', 'BolC4t27475H' => 'bol', 'BolC5t29025H' => 'bol', 'BolC5t29026H' => 'bol', 'BolC8t46898H' => 'bol', 'BolC8t46899H' => 'bol', 'BolC8t52630H' => 'bol', 'BolC8t52765H' => 'bol', 'BolC9t53824H' => 'bol', 'BraA03t09760Z' => 'bra', 'BraA03t10990Z' => 'bra', 'BraA05t20413Z' => 'bra', 'BraA08t35602Z' => 'bra', 'BraA09t36458Z' => 'bra', 'BraA09t42018Z' => 'bra', 'BraA09t42129Z' => 'bra', 'BraA10t42536Z' => 'bra', 'BraA10t42537Z' => 'bra', 'C01p10690' => 'bna', 'C02p03890' => 'bna', 'C02p03900' => 'bna', 'C03p04620' => 'bna', 'C04p19870' => 'bna', 'C04p59670' => 'bna', 'C05p02460' => 'bna', 'C05p02470' => 'bna', 'C08p00980' => 'bna', 'C08p00990' => 'bna', 'C08p51030' => 'bna', 'C08p52360' => 'bna', 'C09p09120' => 'bna', 'CAN.G19.15' => 'can', 'CAN.G251.10' => 'can', 'CAN.G251.9' => 'can', 'CAN.G398.24' => 'can', 'CAN.G410.32' => 'can', 'CAN.G881.2' => 'can', 'CANSAT01G3025' => 'cansat', 'CANSAT78G1211' => 'cansat', 'CANSAT78G1218' => 'cansat', 'CANSAT78G1521' => 'cansat', 'CANSAT78G1670' => 'cansat', 'CARHR003600' => 'chi', 'CARHR003610' => 'chi', 'CARHR006290' => 'chi', 'CARHR006430' => 'chi', 'CARHR124110' => 'chi', 'CARHR203870' => 'chi', 'CARHR203880' => 'chi', 'CARHR203890' => 'chi', 'CARHR276880' => 'chi', 'Carub.0001s0346' => 'cru', 'Carub.0001s0347' => 'cru', 'Carub.0001s0607' => 'cru', 'Carub.0003s2768' => 'cru', 'Carub.0003s2769' => 'cru', 'Carub.0004s1178' => 'cru', 'Carub.0006s0806' => 'cru', 'Carub.0006s0807' => 'cru', 'Carub.0006s0808' => 'cru', 'Carub.0008s0501' => 'cru', 'Carub.0008s2379' => 'cru', 'Ca_08655_v3' => 'car', 'Ca_08922_v3' => 'car', 'Ca_08923_v3' => 'car', 'Ca_09119_v3' => 'car', 'Ca_09703_v3' => 'car', 'Ca_09705_v3' => 'car', 'Ca_09835_v3' => 'car', 'Ca_26403_v3' => 'car', 'Ca_30719_v3' => 'car', 'CBR_g17958' => 'cbr', 'CBR_g40516' => 'cbr', 'Cc00_g05350' => 'ccan', 'Cc01_g18690' => 'ccan', 'Cc03_g04830' => 'ccan', 'Cc03_g04850' => 'ccan', 'CDE02G4469' => 'cde', 'CDE06G0883' => 'cde', 'CDE06G1295' => 'cde', 'CDE06G1390' => 'cde', 'CDE07G0584' => 'cde', 'CDE07G1084' => 'cde', 'CDE08G1259' => 'cde', 'Cfa002341' => 'cfa', 'Cfa024337' => 'cfa', 'Ciclev10004749m.g' => 'ccl', 'Ciclev10006127m.g' => 'ccl', 'Ciclev10019720m.g' => 'ccl', 'Ciclev10022652m.g' => 'ccl', 'CiPaw.01G190400' => 'cil', 'CiPaw.01G190500' => 'cil', 'CiPaw.02G116400' => 'cil', 'CiPaw.02G116500' => 'cil', 'CiPaw.04G183000' => 'cil', 'CiPaw.04G183300' => 'cil', 'ClCG05G004610' => 'cla', 'ClCG05G004620' => 'cla', 'ClCG06G006730' => 'cla', 'ClCG06G006740' => 'cla', 'ClCG11G003690' => 'cla', 'COL.COLO4_08276' => 'col', 'COL.COLO4_08277' => 'col', 'COL.COLO4_15787' => 'col', 'COL.COLO4_15789' => 'col', 'Cpa.g.c44815' => 'cpa', 'Cpa.g.sc52.144' => 'cpa', 'Cpa.g.sc58.46' => 'cpa', 'Cpa.g.sc58.47' => 'cpa', 'Cre08.g360900' => 'cre', 'CsaV3_2G013030' => 'csa', 'CsaV3_2G013050' => 'csa', 'CsaV3_2G015620' => 'csa', 'CsaV3_3G012590' => 'csa', 'CsaV3_3G012600' => 'csa', 'CSS0001641' => 'camsi', 'CSS0008310' => 'camsi', 'CSS0013011' => 'camsi', 'CSS0017147' => 'camsi', 'CSS0022970' => 'camsi', 'CSS0025655' => 'camsi', 'CSS0028665' => 'camsi', 'CSS0029117' => 'camsi', 'CSS0032024' => 'camsi', 'CSS0039681' => 'camsi', 'CSS0046516' => 'camsi', 'CSS0050307' => 'camsi', 'DCAR_005871' => 'dca', 'DCAR_007342' => 'dca', 'DCAR_024228' => 'dca', 'DCAR_027277' => 'dca', 'DCAR_030718' => 'dca', 'Dinv20287' => 'din', 'Dinv22461' => 'din', 'Dinv22464' => 'din', 'Dinv29912' => 'din', 'Dinv29913' => 'din', 'Dinv34580' => 'din', 'Dinv34582' => 'din', 'Dinv44632' => 'din', 'Duzib052G0266' => 'dzi', 'Duzib133G0907' => 'dzi', 'Duzib133G1034' => 'dzi', 'Duzib138G0207' => 'dzi', 'Duzib138G0491' => 'dzi', 'Duzib151G0812' => 'dzi', 'Duzib151G1166' => 'dzi', 'Duzib168G0192' => 'dzi', 'Duzib211G0077' => 'dzi', 'Duzib212G0429' => 'dzi', 'Duzib212G0472' => 'dzi', 'ECA233G2617' => 'eca', 'ECA236G4188' => 'eca', 'ECA240G0936' => 'eca', 'ECA240G1129' => 'eca', 'ECA247G0623' => 'eca', 'EL10Ac5g10451' => 'bvu', 'EL10Ac5g10453' => 'bvu', 'EL10Ac5g10894' => 'bvu', 'Eucgr.H00192' => 'egr', 'Eucgr.H00193' => 'egr', 'Eucgr.H00194' => 'egr', 'Eucgr.J01562' => 'egr', 'Eucgr.K03301' => 'egr', 'FAN02G0632' => 'fan', 'FAN05G5378' => 'fan', 'FAN09G3247' => 'fan', 'FAN12G0435' => 'fan', 'FAN12G2426' => 'fan', 'FAN14G1707' => 'fan', 'FAN14G4725' => 'fan', 'FAN15G2071' => 'fan', 'FAN17G3065' => 'fan', 'FAN19G1376' => 'fan', 'FAN20G0354' => 'fan', 'FAN20G2429' => 'fan', 'FAN20G2658' => 'fan', 'FAN24G2343' => 'fan', 'FAN27G2362' => 'fan', 'FAN28G1765' => 'fan', 'FvH4_1g16020' => 'fve', 'FvH4_2g04890' => 'fve', 'FvH4_2g22270' => 'fve', 'FvH4_4g02630' => 'fve', 'FvH4_4g02640' => 'fve', 'FvH4_6g02650' => 'fve', 'Glyma.02G140600' => 'gma', 'Glyma.03G159900' => 'gma', 'Glyma.05G234800' => 'gma', 'Glyma.07G269600' => 'gma', 'Glyma.08G042300' => 'gma', 'Glyma.10G033500' => 'gma', 'Glyma.10G185200' => 'gma', 'Glyma.17G004300' => 'gma', 'Glyma.19G161900' => 'gma', 'Glyma.20G205100' => 'gma', 'Glyma.20G205200' => 'gma', 'Gohir.A01G139101' => 'ghi', 'Gohir.A02G035600' => 'ghi', 'Gohir.A02G117901' => 'ghi', 'Gohir.A07G210100' => 'ghi', 'Gohir.A07G210200' => 'ghi', 'Gohir.A08G061100' => 'ghi', 'Gohir.A09G223000' => 'ghi', 'Gohir.A09G223100' => 'ghi', 'Gohir.A10G113900' => 'ghi', 'Gohir.A10G114000' => 'ghi', 'Gohir.D02G042300' => 'ghi', 'Gohir.D07G216100' => 'ghi', 'Gohir.D07G216200' => 'ghi', 'Gohir.D08G070400' => 'ghi', 'Gohir.D09G225000' => 'ghi', 'Gohir.D09G225100' => 'ghi', 'Gohir.D10G152300' => 'ghi', 'Gohir.D10G153200' => 'ghi', 'Gohir.D11G133701' => 'ghi', 'Gorai.004G074100' => 'gra', 'Gorai.005G046800' => 'gra', 'Gorai.006G246500' => 'gra', 'Gorai.006G246600' => 'gra', 'Gorai.007G142900' => 'gra', 'Gorai.011G171000' => 'gra', 'Gorai.011G171100' => 'gra', 'Gorai.013G104300' => 'gra', 'Gorai.013G104400' => 'gra', 'GSVIVG01000754001' => 'vvi', 'GSVIVG01000756001' => 'vvi', 'GSVIVG01010903001' => 'vvi', 'GSVIVG01017623001' => 'vvi', 'GSVIVG01018113001' => 'vvi', 'GSVIVG01018116001' => 'vvi', 'GSVIVG01018118001' => 'vvi', 'HanXRQChr03g0076211' => 'han', 'HanXRQChr03g0092431' => 'han', 'HanXRQChr03g0092441' => 'han', 'HanXRQChr03g0092591' => 'han', 'HanXRQChr03g0092671' => 'han', 'HanXRQChr03g0092681' => 'han', 'HanXRQChr03g0092691' => 'han', 'HanXRQChr03g0092701' => 'han', 'HanXRQChr03g0092721' => 'han', 'HanXRQChr03g0092731' => 'han', 'HanXRQChr04g0113681' => 'han', 'HanXRQChr10g0281371' => 'han', 'HanXRQChr11g0337141' => 'han', 'HanXRQChr13g0424521' => 'han', 'HanXRQChr13g0424531' => 'han', 'HanXRQChr13g0424541' => 'han', 'HanXRQChr16g0498221' => 'han', 'Haze_04377' => 'cav', 'Haze_11298' => 'cav', 'Haze_24547' => 'cav', 'Haze_24550' => 'cav', 'Haze_26587' => 'cav', 'Hma1.2p1_0650F.1_g195410' => 'hma', 'Hma1.2p1_0893F.1_g233470' => 'hma', 'HPP92_006508' => 'vpl', 'HPP92_024780' => 'vpl', 'Hund02688' => 'sun', 'Hund09380' => 'sun', 'Hund09381' => 'sun', 'Hund09832' => 'sun', 'Hund09833' => 'sun', 'Hund11351' => 'sun', 'Hund11513' => 'sun', 'Lalb_Chr06g0162591' => 'lal', 'Lalb_Chr06g0162601' => 'lal', 'Lalb_Chr06g0169321' => 'lal', 'Lalb_Chr09g0330951' => 'lal', 'Lalb_Chr16g0387631' => 'lal', 'Lalb_Chr21g0306241' => 'lal', 'Lalb_Chr25g0290051' => 'lal', 'Lalb_Chr25g0290061' => 'lal', 'Lalb_Chr25g0290071' => 'lal', 'Lj1g0003876' => 'lja', 'Lj1P1207T36' => 'lonja', 'Lj2C1156G12' => 'lonja', 'Lj3A793G39' => 'lonja', 'Lj3C580G2' => 'lonja', 'Lj3C780G2' => 'lonja', 'Lj3C780T4' => 'lonja', 'Lj3C793G9' => 'lonja', 'Lj4g0012960' => 'lja', 'Lj5g0021252' => 'lja', 'Lj5g0021484' => 'lja', 'Lj5g0024528' => 'lja', 'Lj6A399T12' => 'lonja', 'Lj6A656G65' => 'lonja', 'Lsat_1_v5_gn_3_125500' => 'lsa', 'Lsat_1_v5_gn_3_125540' => 'lsa', 'Lsat_1_v5_gn_5_72701' => 'lsa', 'Lsat_1_v5_gn_8_91560' => 'lsa', 'Lsat_1_v5_gn_9_9640' => 'lsa', 'Manes.01G200600' => 'mes', 'Manes.01G200700' => 'mes', 'Manes.03G168900' => 'mes', 'Manes.03G169000' => 'mes', 'Manes.05G085801' => 'mes', 'Manes.05G086200' => 'mes', 'Manes.15G036700' => 'mes', 'Manes.15G036900' => 'mes', 'Mapoly0004s0172' => 'mpo', 'Mapoly0023s0001' => 'mpo', 'Mapoly0142s0012' => 'mpo', 'MBI01_g32854_MAGBIO' => 'mbi', 'MBI11_g24427_MAGBIO' => 'mbi', 'MBI11_g47319_MAGBIO' => 'mbi', 'MCO01G433' => 'mco', 'MD00G1187800' => 'mdo', 'MD04G1226500' => 'mdo', 'MD05G1203900' => 'mdo', 'MD10G1191100' => 'mdo', 'MD12G1243500' => 'mdo', 'MD13G1207000' => 'mdo', 'MD13G1207100' => 'mdo', 'MD16G1208600' => 'mdo', 'Medtr1g050352' => 'mtr', 'Medtr1g070385' => 'mtr', 'Medtr1g070450' => 'mtr', 'Medtr1g075200' => 'mtr', 'Medtr1g075250' => 'mtr', 'Medtr1g075260' => 'mtr', 'Medtr1g475250' => 'mtr', 'Medtr4g075450' => 'mtr', 'Medtr7g096300' => 'mtr', 'Medtr8g105110' => 'mtr', 'MELO3C006470.2' => 'cme', 'MELO3C006471.2' => 'cme', 'MELO3C020772.2' => 'cme', 'MELO3C026780.2' => 'cme', 'MELO3C026781.2' => 'cme', 'Migut.D00390' => 'egut', 'Migut.G00435' => 'egut', 'Migut.G00436' => 'egut', 'Migut.G00718' => 'egut', 'MSTRG.21891' => 'ama', 'MSTRG.26910' => 'ama', 'MSTRG.4099' => 'ama', 'MSTRG.9925' => 'ama', 'Nitab4.5_0000165g0010' => 'nta', 'Nitab4.5_0000209g0180' => 'nta', 'Nitab4.5_0000244g0440' => 'nta', 'Nitab4.5_0000525g0220' => 'nta', 'Nitab4.5_0001597g0020' => 'nta', 'Nitab4.5_0001878g0040' => 'nta', 'Nitab4.5_0001878g0060' => 'nta', 'Nitab4.5_0002838g0100' => 'nta', 'Nitab4.5_0002838g0120' => 'nta', 'Nitab4.5_0004798g0030' => 'nta', 'Nitab4.5_0005420g0010' => 'nta', 'Nitab4.5_0005507g0010' => 'nta', 'Nitab4.5_0005574g0020' => 'nta', 'Nitab4.5_0005838g0010' => 'nta', 'Nitab4.5_0010580g0020' => 'nta', 'Nn1g02599' => 'nnu', 'Nn1g02608' => 'nnu', 'Nn3g17742' => 'nnu', 'Nn3g19534' => 'nnu', 'Nn3g19535' => 'nnu', 'Oeu008790.1' => 'oeu', 'Oeu008792.1' => 'oeu', 'Oeu032590.1' => 'oeu', 'Oeu035349.1' => 'oeu', 'Oeu049791.1' => 'oeu', 'Os01g0774500' => 'osa', 'Os03g0628800' => 'osa', 'Os03g0798600' => 'osa', 'Os05g0508800' => 'osa', 'Peaxi162Scf00036g02018' => 'pax', 'Peaxi162Scf00578g00032' => 'pax', 'Peaxi162Scf00578g00317' => 'pax', 'Peaxi162Scf00785g00114' => 'pax', 'Peaxi162Scf00813g00119' => 'pax', 'Peaxi162Scf00906g00227' => 'pax', 'PGR004G0875' => 'pgr', 'PGR004G2424' => 'pgr', 'PGR031G1239' => 'pgr', 'PGR031G2474' => 'pgr', 'PGR044G0423' => 'pgr', 'PGSC0003DMG400001128' => 'stu', 'PGSC0003DMG400007336' => 'stu', 'PGSC0003DMG400016318' => 'stu', 'PGSC0003DMG400016319' => 'stu', 'PGSC0003DMG400018074' => 'stu', 'Phvul.001G157700' => 'pvu', 'Phvul.002G148550' => 'pvu', 'Phvul.002G320200' => 'pvu', 'Phvul.003G089200' => 'pvu', 'Phvul.007G126000' => 'pvu', 'Phvul.007G126100' => 'pvu', 'Phvul.007G178000' => 'pvu', 'Phvul.007G178200' => 'pvu', 'Potri.002G043000' => 'ptr', 'Potri.002G043200' => 'ptr', 'Potri.003G123750' => 'ptr', 'Potri.005G055401' => 'ptr', 'Potri.005G219700' => 'ptr', 'Potri.005G220000' => 'ptr', 'Potri.008G161901' => 'ptr', 'Potri.008G162000' => 'ptr', 'Potri.008G162400' => 'ptr', 'Potri.010G076900' => 'ptr', 'Pp3c12_9180' => 'ppa', 'Pp3c13_19770' => 'ppa', 'Pp3c14_22950' => 'ppa', 'Pp3c16_12160' => 'ppa', 'Pp3c27_7820' => 'ppa', 'Pp3c2_3490' => 'ppa', 'Pp3c3_23700' => 'ppa', 'Pp3c3_36520' => 'ppa', 'Pp3c4_15250' => 'ppa', 'PRCOL_00007002' => 'pco', 'Prupe.1G030600' => 'ppe', 'Prupe.1G030700' => 'ppe', 'Prupe.6G345200' => 'ppe', 'Prupe.8G230300' => 'ppe', 'Prupe.8G230500' => 'ppe', 'Psat3g059600' => 'psa', 'Psat5g200920' => 'psa', 'Psat6g056440' => 'psa', 'Psat6g057360' => 'psa', 'Psat6g134120' => 'psa', 'Psat6g134160' => 'psa', 'Psat7g008640' => 'psa', 'Psat7g185240' => 'psa', 'PSO017G1330' => 'pso', 'PSO063G6097' => 'pso', 'PSO170G0835' => 'pso', 'PSO170G2499' => 'pso', 'PSO210G5058' => 'pso', 'PSO210G6154' => 'pso', 'PSO585G0031' => 'pso', 'PSO832G0264' => 'pso', 'PSO832G4288' => 'pso', 'QL03p027355' => 'qlo', 'QL03p027430' => 'qlo', 'QL04p081380' => 'qlo', 'QL06p015642' => 'qlo', 'QL06p015650' => 'qlo', 'QL06p015686' => 'qlo', 'QL12p042927' => 'qlo', 'QL93p1863_0035' => 'qlo', 'RcHm_v2.0_Chr3g0450581' => 'rch', 'RcHm_v2.0_Chr4g0390371' => 'rch', 'RcHm_v2.0_Chr4g0390381' => 'rch', 'RcHm_v2.0_Chr4g0390491' => 'rch', 'RcHm_v2.0_Chr4g0390501' => 'rch', 'RcHm_v2.0_Chr6g0289231' => 'rch', 'Rhsim04G0190400' => 'rsi', 'Rhsim04G0190500' => 'rsi', 'Rhsim04G0190600' => 'rsi', 'Rhsim13G0031400' => 'rsi', 'Rhsim13G0165600' => 'rsi', 'RhsimUnG0114600' => 'rsi', 'RhsimUnG0114700' => 'rsi', 'Sabra02G0034800' => 'sbr', 'Sabra02G0035100' => 'sbr', 'Sabra05G0168600' => 'sbr', 'Sabra05G0168800' => 'sbr', 'Sabra08G0123700' => 'sbr', 'Sabra10G0031900' => 'sbr', 'Sabra13G0039000' => 'sbr', 'SalBow2G0782' => 'sbo', 'SalBow2G1403' => 'sbo', 'SalBow4G0074' => 'sbo', 'SalBow4G2635' => 'sbo', 'SalBow5G3010' => 'sbo', 'Sc05g0000870' => 'sci', 'Sc05g0000890' => 'sci', 'Sc13g0005000' => 'sci', 'Sc13g0005030' => 'sci', 'Sc19g0003790' => 'sci', 'Sc19g0003800' => 'sci', 'Sed0003467' => 'sed', 'Sed0009355' => 'sed', 'Sed0009894' => 'sed', 'Sed0011972' => 'sed', 'Sed0021483' => 'sed', 'Sed0021750' => 'sed', 'Sed0026279' => 'sed', 'SEGI_05312' => 'sgi', 'SEGI_10112' => 'sgi', 'SEGI_15835' => 'sgi', 'SEGI_30386' => 'sgi', 'SEGI_34122' => 'sgi', 'SEGI_35063' => 'sgi', 'SGA_v2.0_scaffold101G29794' => 'sas', 'SGA_v2.0_scaffold1G00573' => 'sas', 'SGA_v2.0_scaffold79G25637' => 'sas', 'SGA_v2.0_scaffold88G27283' => 'sas', 'SGA_v2.0_scaffold88G27285' => 'sas', 'SGA_v2.0_scaffold88G27331' => 'sas', 'SHI09937' => 'shi', 'SMO119G0302' => 'smo', 'SMO137G0231' => 'smo', 'SMO367G1151' => 'smo', 'Solyc02g082000.3' => 'sly', 'Solyc06g031670.3' => 'sly', 'Solyc06g053810.3' => 'sly', 'Solyc07g025457.1' => 'sly', 'Solyc08g059740.1' => 'sly', 'Solyc08g059750.3' => 'sly', 'Solyc09g083370.3' => 'sly', 'Solyc12g038950.3' => 'sly', 'Sopen02g026630' => 'spe', 'Sopen06g018930' => 'spe', 'Sopen06g018940' => 'spe', 'Sopen08g009460' => 'spe', 'Sopen09g032290' => 'spe', 'Sp1g03080' => 'spa', 'Sp1g03090' => 'spa', 'Sp1g05480' => 'spa', 'Sp2g07860' => 'spa', 'Sp2g08430' => 'spa', 'Sp2g08440' => 'spa', 'Sp2g26200' => 'spa', 'Sp4g13170' => 'spa', 'Sp6g33840' => 'spa', 'SpUn1204_0010' => 'spa', 'TAR365G0908' => 'tar', 'TAR381G1270' => 'tar', 'TAR381G1651' => 'tar', 'TAR625G1131' => 'tar', 'TAR633G0962' => 'tar', 'TAR633G1729' => 'tar', 'TAR633G1864' => 'tar', 'TAR636G0221' => 'tar', 'TAR636G0314' => 'tar', 'TAR636G3202' => 'tar', 'THA.LOC104800805' => 'tha', 'THA.LOC104801096' => 'tha', 'THA.LOC104801555' => 'tha', 'THA.LOC104808491' => 'tha', 'THA.LOC104808595' => 'tha', 'THA.LOC104815985' => 'tha', 'THA.LOC104822250' => 'tha', 'THA.LOC104826071' => 'tha', 'Thecc.01G265200' => 'tca', 'Thecc.01G265300' => 'tca', 'Thecc.01G265700' => 'tca', 'Thecc.03G109100' => 'tca', 'Thecc.04G245900' => 'tca', 'Thecc.04G246000' => 'tca', 'Thhalv10003334m.g' => 'esa', 'Thhalv10005508m.g' => 'esa', 'Thhalv10005643m.g' => 'esa', 'Thhalv10007316m.g' => 'esa', 'Thhalv10009006m.g' => 'esa', 'Thhalv10009309m.g' => 'esa', 'Thhalv10014917m.g' => 'esa', 'Thhalv10014919m.g' => 'esa', 'Thhalv10015393m.g' => 'esa', 'Thhalv10016515m.g' => 'esa', 'Thhalv10029242m.g' => 'esa', 'TPR.G16654' => 'tpr', 'TPR.G20589' => 'tpr', 'TPR.G23029' => 'tpr', 'TPR.G27731' => 'tpr', 'TPR.G28889' => 'tpr', 'TPR.G28899' => 'tpr', 'TPR.G30846' => 'tpr', 'TPR.G5452' => 'tpr', 'TPR.G5713' => 'tpr', 'TPR.G9046' => 'tpr', 'TPR.G9061' => 'tpr', 'TWI09G1075' => 'twi', 'TWI12G0806' => 'twi', 'TWI18G0108' => 'twi', 'TWI53G1361' => 'twi', 'TWI73G0185' => 'twi', 'TWI73G0427' => 'twi', 'unitig_37.g12001' => 'ugi', 'unitig_747.g21660' => 'ugi', 'unitig_748.g7232' => 'ugi', 'unitig_748.g7315' => 'ugi', 'unitig_85.g27262' => 'ugi', 'unitig_92.g28220' => 'ugi', 'vmacro02632' => 'vma', 'vmacro08410' => 'vma', 'vmacro08411' => 'vma', 'vmacro15407' => 'vma', 'VMungo0251G3619' => 'vmu', 'VMungo0720G1204' => 'vmu', 'VMungo0720G1918' => 'vmu', 'VMungo0720G2387' => 'vmu', 'VMungo0720G2961' => 'vmu', 'VMungo1215G2154' => 'vmu', 'VMungo1383G2411' => 'vmu', 'Zm00001eb051130' => 'zma', 'Zm00001eb116830' => 'zma', 'Zm00001eb116850' => 'zma', 'Zm00001eb151740' => 'zma', 'Zm00001eb292360' => 'zma', 'Zm00001eb301640' => 'zma' ), 'gf_id' => 'HOM05D000856', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000856' ), 'data_identifier' => 'HOM05D000856', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000856', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p00010' => 'bna', 'A03p04160' => 'bna', 'A03p17160' => 'bna', 'A04p23370' => 'bna', 'A05p14860' => 'bna', 'A08p37020' => 'bna', 'A09p08050' => 'bna', 'A09p66800' => 'bna', 'A09p67940' => 'bna', 'A10p02680' => 'bna', 'A10p05320' => 'bna', 'Aa31LG1G20560' => 'aar', 'Aa31LG1G20610' => 'aar', 'Aa31LG1G7810' => 'aar', 'Aa31LG5G3590' => 'aar', 'Aa31LG5G6140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3819' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4683' => 'aag', 'Actinidia04480' => 'ach', 'Actinidia05466' => 'ach', 'Actinidia08445' => 'ach', 'Actinidia21170' => 'ach', 'Actinidia24812' => 'ach', 'Actinidia24951' => 'ach', 'Actinidia40088' => 'ach', 'Ah.02g111660' => 'amhyb', 'Ah.11g048900' => 'amhyb', 'Ah.11g049910' => 'amhyb', 'AL1G13870' => 'aly', 'AL1G13880' => 'aly', 'AL1G16760' => 'aly', 'AL390U10020' => 'aly', 'AL4G25520' => 'aly', 'AL6G19890' => 'aly', 'AL6G19900' => 'aly', 'AL6G19910' => 'aly', 'AL8G40100' => 'aly', 'Aqoxy2G03562' => 'aox', 'Aqoxy5G00316' => 'aox', 'Aqoxy5G00926' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1628KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1H403S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2FU6SJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.882I6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8YRY2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YN1SN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AF70II' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZA8L1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F916KL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHRD8H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KTZ8QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S22EMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8M29T' => 'arhy', 'AT1G04270' => 'ath', 'AT1G04280' => 'ath', 'AT1G06750' => 'ath', 'AT1G33850' => 'ath', 'AT2G30630' => 'ath', 'AT5G09490' => 'ath', 'AT5G09500' => 'ath', 'AT5G09510' => 'ath', 'AT5G43640' => 'ath', 'AT5G63070' => 'ath', 'ATR0605G315' => 'atr', 'Atru.chr11.175' => 'acertr', 'Atru.chr11.653' => 'acertr', 'Atru.chr3.1616' => 'acertr', 'Atru.chr4.2230' => 'acertr', 'Atru.chr4.2232' => 'acertr', 'Atru.chr5.1598' => 'acertr', 'Atru.chr5.1600' => 'acertr', 'Atru.chr5.2188' => 'acertr', 'AUR62008326' => 'cqu', 'AUR62011922' => 'cqu', 'AUR62011924' => 'cqu', 'AUR62021771' => 'cqu', 'AUR62032237' => 'cqu', 'AUR62032240' => 'cqu', 'BcaB01g05572' => 'bca', 'BcaB02g10337' => 'bca', 'BcaB04g19944' => 'bca', 'BcaB05g21548' => 'bca', 'BcaB05g21549' => 'bca', 'BcaB05g23227' => 'bca', 'BcaB06g26256' => 'bca', 'BcaB06g26257' => 'bca', 'BcaB06g28379' => 'bca', 'BcaC02g11159' => 'bca', 'BcaC03g13258' => 'bca', 'BcaC03g13259' => 'bca', 'BcaC05g24456' => 'bca', 'BcaC05g24457' => 'bca', 'BcaC07g36922' => 'bca', 'BcaC07g36923' => 'bca', 'BcaC07g42050' => 'bca', 'BcaC07g42176' => 'bca', 'BcaC07g42195' => 'bca', 'BcaC07g42196' => 'bca', 'BcaNung06674' => 'bca', 'BolC2t06351H' => 'bol', 'BolC2t06352H' => 'bol', 'BolC3t12993H' => 'bol', 'BolC4t23525H' => 'bol', 'BolC4t27475H' => 'bol', 'BolC5t29025H' => 'bol', 'BolC5t29026H' => 'bol', 'BolC8t46898H' => 'bol', 'BolC8t46899H' => 'bol', 'BolC8t52630H' => 'bol', 'BolC8t52765H' => 'bol', 'BolC9t53824H' => 'bol', 'BraA03t09760Z' => 'bra', 'BraA03t10990Z' => 'bra', 'BraA05t20413Z' => 'bra', 'BraA08t35602Z' => 'bra', 'BraA09t36458Z' => 'bra', 'BraA09t42018Z' => 'bra', 'BraA09t42129Z' => 'bra', 'BraA10t42536Z' => 'bra', 'BraA10t42537Z' => 'bra', 'C01p10690' => 'bna', 'C02p03890' => 'bna', 'C02p03900' => 'bna', 'C03p04620' => 'bna', 'C04p19870' => 'bna', 'C04p59670' => 'bna', 'C05p02460' => 'bna', 'C05p02470' => 'bna', 'C08p00980' => 'bna', 'C08p00990' => 'bna', 'C08p51030' => 'bna', 'C08p52360' => 'bna', 'C09p09120' => 'bna', 'CAN.G19.15' => 'can', 'CAN.G251.10' => 'can', 'CAN.G251.9' => 'can', 'CAN.G398.24' => 'can', 'CAN.G410.32' => 'can', 'CAN.G881.2' => 'can', 'CANSAT01G3025' => 'cansat', 'CANSAT78G1211' => 'cansat', 'CANSAT78G1218' => 'cansat', 'CANSAT78G1521' => 'cansat', 'CANSAT78G1670' => 'cansat', 'CARHR003600' => 'chi', 'CARHR003610' => 'chi', 'CARHR006290' => 'chi', 'CARHR006430' => 'chi', 'CARHR124110' => 'chi', 'CARHR203870' => 'chi', 'CARHR203880' => 'chi', 'CARHR203890' => 'chi', 'CARHR276880' => 'chi', 'Carub.0001s0346' => 'cru', 'Carub.0001s0347' => 'cru', 'Carub.0001s0607' => 'cru', 'Carub.0003s2768' => 'cru', 'Carub.0003s2769' => 'cru', 'Carub.0004s1178' => 'cru', 'Carub.0006s0806' => 'cru', 'Carub.0006s0807' => 'cru', 'Carub.0006s0808' => 'cru', 'Carub.0008s0501' => 'cru', 'Carub.0008s2379' => 'cru', 'Ca_08655_v3' => 'car', 'Ca_08922_v3' => 'car', 'Ca_08923_v3' => 'car', 'Ca_09119_v3' => 'car', 'Ca_09703_v3' => 'car', 'Ca_09705_v3' => 'car', 'Ca_09835_v3' => 'car', 'Ca_26403_v3' => 'car', 'Ca_30719_v3' => 'car', 'CBR_g17958' => 'cbr', 'CBR_g40516' => 'cbr', 'Cc00_g05350' => 'ccan', 'Cc01_g18690' => 'ccan', 'Cc03_g04830' => 'ccan', 'Cc03_g04850' => 'ccan', 'CDE02G4469' => 'cde', 'CDE06G0883' => 'cde', 'CDE06G1295' => 'cde', 'CDE06G1390' => 'cde', 'CDE07G0584' => 'cde', 'CDE07G1084' => 'cde', 'CDE08G1259' => 'cde', 'Cfa002341' => 'cfa', 'Cfa024337' => 'cfa', 'Ciclev10004749m.g' => 'ccl', 'Ciclev10006127m.g' => 'ccl', 'Ciclev10019720m.g' => 'ccl', 'Ciclev10022652m.g' => 'ccl', 'CiPaw.01G190400' => 'cil', 'CiPaw.01G190500' => 'cil', 'CiPaw.02G116400' => 'cil', 'CiPaw.02G116500' => 'cil', 'CiPaw.04G183000' => 'cil', 'CiPaw.04G183300' => 'cil', 'ClCG05G004610' => 'cla', 'ClCG05G004620' => 'cla', 'ClCG06G006730' => 'cla', 'ClCG06G006740' => 'cla', 'ClCG11G003690' => 'cla', 'COL.COLO4_08276' => 'col', 'COL.COLO4_08277' => 'col', 'COL.COLO4_15787' => 'col', 'COL.COLO4_15789' => 'col', 'Cpa.g.c44815' => 'cpa', 'Cpa.g.sc52.144' => 'cpa', 'Cpa.g.sc58.46' => 'cpa', 'Cpa.g.sc58.47' => 'cpa', 'Cre08.g360900' => 'cre', 'CsaV3_2G013030' => 'csa', 'CsaV3_2G013050' => 'csa', 'CsaV3_2G015620' => 'csa', 'CsaV3_3G012590' => 'csa', 'CsaV3_3G012600' => 'csa', 'CSS0001641' => 'camsi', 'CSS0008310' => 'camsi', 'CSS0013011' => 'camsi', 'CSS0017147' => 'camsi', 'CSS0022970' => 'camsi', 'CSS0025655' => 'camsi', 'CSS0028665' => 'camsi', 'CSS0029117' => 'camsi', 'CSS0032024' => 'camsi', 'CSS0039681' => 'camsi', 'CSS0046516' => 'camsi', 'CSS0050307' => 'camsi', 'DCAR_005871' => 'dca', 'DCAR_007342' => 'dca', 'DCAR_024228' => 'dca', 'DCAR_027277' => 'dca', 'DCAR_030718' => 'dca', 'Dinv20287' => 'din', 'Dinv22461' => 'din', 'Dinv22464' => 'din', 'Dinv29912' => 'din', 'Dinv29913' => 'din', 'Dinv34580' => 'din', 'Dinv34582' => 'din', 'Dinv44632' => 'din', 'Duzib052G0266' => 'dzi', 'Duzib133G0907' => 'dzi', 'Duzib133G1034' => 'dzi', 'Duzib138G0207' => 'dzi', 'Duzib138G0491' => 'dzi', 'Duzib151G0812' => 'dzi', 'Duzib151G1166' => 'dzi', 'Duzib168G0192' => 'dzi', 'Duzib211G0077' => 'dzi', 'Duzib212G0429' => 'dzi', 'Duzib212G0472' => 'dzi', 'ECA233G2617' => 'eca', 'ECA236G4188' => 'eca', 'ECA240G0936' => 'eca', 'ECA240G1129' => 'eca', 'ECA247G0623' => 'eca', 'EL10Ac5g10451' => 'bvu', 'EL10Ac5g10453' => 'bvu', 'EL10Ac5g10894' => 'bvu', 'Eucgr.H00192' => 'egr', 'Eucgr.H00193' => 'egr', 'Eucgr.H00194' => 'egr', 'Eucgr.J01562' => 'egr', 'Eucgr.K03301' => 'egr', 'FAN02G0632' => 'fan', 'FAN05G5378' => 'fan', 'FAN09G3247' => 'fan', 'FAN12G0435' => 'fan', 'FAN12G2426' => 'fan', 'FAN14G1707' => 'fan', 'FAN14G4725' => 'fan', 'FAN15G2071' => 'fan', 'FAN17G3065' => 'fan', 'FAN19G1376' => 'fan', 'FAN20G0354' => 'fan', 'FAN20G2429' => 'fan', 'FAN20G2658' => 'fan', 'FAN24G2343' => 'fan', 'FAN27G2362' => 'fan', 'FAN28G1765' => 'fan', 'FvH4_1g16020' => 'fve', 'FvH4_2g04890' => 'fve', 'FvH4_2g22270' => 'fve', 'FvH4_4g02630' => 'fve', 'FvH4_4g02640' => 'fve', 'FvH4_6g02650' => 'fve', 'Glyma.02G140600' => 'gma', 'Glyma.03G159900' => 'gma', 'Glyma.05G234800' => 'gma', 'Glyma.07G269600' => 'gma', 'Glyma.08G042300' => 'gma', 'Glyma.10G033500' => 'gma', 'Glyma.10G185200' => 'gma', 'Glyma.17G004300' => 'gma', 'Glyma.19G161900' => 'gma', 'Glyma.20G205100' => 'gma', 'Glyma.20G205200' => 'gma', 'Gohir.A01G139101' => 'ghi', 'Gohir.A02G035600' => 'ghi', 'Gohir.A02G117901' => 'ghi', 'Gohir.A07G210100' => 'ghi', 'Gohir.A07G210200' => 'ghi', 'Gohir.A08G061100' => 'ghi', 'Gohir.A09G223000' => 'ghi', 'Gohir.A09G223100' => 'ghi', 'Gohir.A10G113900' => 'ghi', 'Gohir.A10G114000' => 'ghi', 'Gohir.D02G042300' => 'ghi', 'Gohir.D07G216100' => 'ghi', 'Gohir.D07G216200' => 'ghi', 'Gohir.D08G070400' => 'ghi', 'Gohir.D09G225000' => 'ghi', 'Gohir.D09G225100' => 'ghi', 'Gohir.D10G152300' => 'ghi', 'Gohir.D10G153200' => 'ghi', 'Gohir.D11G133701' => 'ghi', 'Gorai.004G074100' => 'gra', 'Gorai.005G046800' => 'gra', 'Gorai.006G246500' => 'gra', 'Gorai.006G246600' => 'gra', 'Gorai.007G142900' => 'gra', 'Gorai.011G171000' => 'gra', 'Gorai.011G171100' => 'gra', 'Gorai.013G104300' => 'gra', 'Gorai.013G104400' => 'gra', 'GSVIVG01000754001' => 'vvi', 'GSVIVG01000756001' => 'vvi', 'GSVIVG01010903001' => 'vvi', 'GSVIVG01017623001' => 'vvi', 'GSVIVG01018113001' => 'vvi', 'GSVIVG01018116001' => 'vvi', 'GSVIVG01018118001' => 'vvi', 'HanXRQChr03g0076211' => 'han', 'HanXRQChr03g0092431' => 'han', 'HanXRQChr03g0092441' => 'han', 'HanXRQChr03g0092591' => 'han', 'HanXRQChr03g0092671' => 'han', 'HanXRQChr03g0092681' => 'han', 'HanXRQChr03g0092691' => 'han', 'HanXRQChr03g0092701' => 'han', 'HanXRQChr03g0092721' => 'han', 'HanXRQChr03g0092731' => 'han', 'HanXRQChr04g0113681' => 'han', 'HanXRQChr10g0281371' => 'han', 'HanXRQChr11g0337141' => 'han', 'HanXRQChr13g0424521' => 'han', 'HanXRQChr13g0424531' => 'han', 'HanXRQChr13g0424541' => 'han', 'HanXRQChr16g0498221' => 'han', 'Haze_04377' => 'cav', 'Haze_11298' => 'cav', 'Haze_24547' => 'cav', 'Haze_24550' => 'cav', 'Haze_26587' => 'cav', 'Hma1.2p1_0650F.1_g195410' => 'hma', 'Hma1.2p1_0893F.1_g233470' => 'hma', 'HPP92_006508' => 'vpl', 'HPP92_024780' => 'vpl', 'Hund02688' => 'sun', 'Hund09380' => 'sun', 'Hund09381' => 'sun', 'Hund09832' => 'sun', 'Hund09833' => 'sun', 'Hund11351' => 'sun', 'Hund11513' => 'sun', 'Lalb_Chr06g0162591' => 'lal', 'Lalb_Chr06g0162601' => 'lal', 'Lalb_Chr06g0169321' => 'lal', 'Lalb_Chr09g0330951' => 'lal', 'Lalb_Chr16g0387631' => 'lal', 'Lalb_Chr21g0306241' => 'lal', 'Lalb_Chr25g0290051' => 'lal', 'Lalb_Chr25g0290061' => 'lal', 'Lalb_Chr25g0290071' => 'lal', 'Lj1g0003876' => 'lja', 'Lj1P1207T36' => 'lonja', 'Lj2C1156G12' => 'lonja', 'Lj3A793G39' => 'lonja', 'Lj3C580G2' => 'lonja', 'Lj3C780G2' => 'lonja', 'Lj3C780T4' => 'lonja', 'Lj3C793G9' => 'lonja', 'Lj4g0012960' => 'lja', 'Lj5g0021252' => 'lja', 'Lj5g0021484' => 'lja', 'Lj5g0024528' => 'lja', 'Lj6A399T12' => 'lonja', 'Lj6A656G65' => 'lonja', 'Lsat_1_v5_gn_3_125500' => 'lsa', 'Lsat_1_v5_gn_3_125540' => 'lsa', 'Lsat_1_v5_gn_5_72701' => 'lsa', 'Lsat_1_v5_gn_8_91560' => 'lsa', 'Lsat_1_v5_gn_9_9640' => 'lsa', 'Manes.01G200600' => 'mes', 'Manes.01G200700' => 'mes', 'Manes.03G168900' => 'mes', 'Manes.03G169000' => 'mes', 'Manes.05G085801' => 'mes', 'Manes.05G086200' => 'mes', 'Manes.15G036700' => 'mes', 'Manes.15G036900' => 'mes', 'Mapoly0004s0172' => 'mpo', 'Mapoly0023s0001' => 'mpo', 'Mapoly0142s0012' => 'mpo', 'MBI01_g32854_MAGBIO' => 'mbi', 'MBI11_g24427_MAGBIO' => 'mbi', 'MBI11_g47319_MAGBIO' => 'mbi', 'MCO01G433' => 'mco', 'MD00G1187800' => 'mdo', 'MD04G1226500' => 'mdo', 'MD05G1203900' => 'mdo', 'MD10G1191100' => 'mdo', 'MD12G1243500' => 'mdo', 'MD13G1207000' => 'mdo', 'MD13G1207100' => 'mdo', 'MD16G1208600' => 'mdo', 'Medtr1g050352' => 'mtr', 'Medtr1g070385' => 'mtr', 'Medtr1g070450' => 'mtr', 'Medtr1g075200' => 'mtr', 'Medtr1g075250' => 'mtr', 'Medtr1g075260' => 'mtr', 'Medtr1g475250' => 'mtr', 'Medtr4g075450' => 'mtr', 'Medtr7g096300' => 'mtr', 'Medtr8g105110' => 'mtr', 'MELO3C006470.2' => 'cme', 'MELO3C006471.2' => 'cme', 'MELO3C020772.2' => 'cme', 'MELO3C026780.2' => 'cme', 'MELO3C026781.2' => 'cme', 'Migut.D00390' => 'egut', 'Migut.G00435' => 'egut', 'Migut.G00436' => 'egut', 'Migut.G00718' => 'egut', 'MSTRG.21891' => 'ama', 'MSTRG.26910' => 'ama', 'MSTRG.4099' => 'ama', 'MSTRG.9925' => 'ama', 'Nitab4.5_0000165g0010' => 'nta', 'Nitab4.5_0000209g0180' => 'nta', 'Nitab4.5_0000244g0440' => 'nta', 'Nitab4.5_0000525g0220' => 'nta', 'Nitab4.5_0001597g0020' => 'nta', 'Nitab4.5_0001878g0040' => 'nta', 'Nitab4.5_0001878g0060' => 'nta', 'Nitab4.5_0002838g0100' => 'nta', 'Nitab4.5_0002838g0120' => 'nta', 'Nitab4.5_0004798g0030' => 'nta', 'Nitab4.5_0005420g0010' => 'nta', 'Nitab4.5_0005507g0010' => 'nta', 'Nitab4.5_0005574g0020' => 'nta', 'Nitab4.5_0005838g0010' => 'nta', 'Nitab4.5_0010580g0020' => 'nta', 'Nn1g02599' => 'nnu', 'Nn1g02608' => 'nnu', 'Nn3g17742' => 'nnu', 'Nn3g19534' => 'nnu', 'Nn3g19535' => 'nnu', 'Oeu008790.1' => 'oeu', 'Oeu008792.1' => 'oeu', 'Oeu032590.1' => 'oeu', 'Oeu035349.1' => 'oeu', 'Oeu049791.1' => 'oeu', 'Os01g0774500' => 'osa', 'Os03g0628800' => 'osa', 'Os03g0798600' => 'osa', 'Os05g0508800' => 'osa', 'Peaxi162Scf00036g02018' => 'pax', 'Peaxi162Scf00578g00032' => 'pax', 'Peaxi162Scf00578g00317' => 'pax', 'Peaxi162Scf00785g00114' => 'pax', 'Peaxi162Scf00813g00119' => 'pax', 'Peaxi162Scf00906g00227' => 'pax', 'PGR004G0875' => 'pgr', 'PGR004G2424' => 'pgr', 'PGR031G1239' => 'pgr', 'PGR031G2474' => 'pgr', 'PGR044G0423' => 'pgr', 'PGSC0003DMG400001128' => 'stu', 'PGSC0003DMG400007336' => 'stu', 'PGSC0003DMG400016318' => 'stu', 'PGSC0003DMG400016319' => 'stu', 'PGSC0003DMG400018074' => 'stu', 'Phvul.001G157700' => 'pvu', 'Phvul.002G148550' => 'pvu', 'Phvul.002G320200' => 'pvu', 'Phvul.003G089200' => 'pvu', 'Phvul.007G126000' => 'pvu', 'Phvul.007G126100' => 'pvu', 'Phvul.007G178000' => 'pvu', 'Phvul.007G178200' => 'pvu', 'Potri.002G043000' => 'ptr', 'Potri.002G043200' => 'ptr', 'Potri.003G123750' => 'ptr', 'Potri.005G055401' => 'ptr', 'Potri.005G219700' => 'ptr', 'Potri.005G220000' => 'ptr', 'Potri.008G161901' => 'ptr', 'Potri.008G162000' => 'ptr', 'Potri.008G162400' => 'ptr', 'Potri.010G076900' => 'ptr', 'Pp3c12_9180' => 'ppa', 'Pp3c13_19770' => 'ppa', 'Pp3c14_22950' => 'ppa', 'Pp3c16_12160' => 'ppa', 'Pp3c27_7820' => 'ppa', 'Pp3c2_3490' => 'ppa', 'Pp3c3_23700' => 'ppa', 'Pp3c3_36520' => 'ppa', 'Pp3c4_15250' => 'ppa', 'PRCOL_00007002' => 'pco', 'Prupe.1G030600' => 'ppe', 'Prupe.1G030700' => 'ppe', 'Prupe.6G345200' => 'ppe', 'Prupe.8G230300' => 'ppe', 'Prupe.8G230500' => 'ppe', 'Psat3g059600' => 'psa', 'Psat5g200920' => 'psa', 'Psat6g056440' => 'psa', 'Psat6g057360' => 'psa', 'Psat6g134120' => 'psa', 'Psat6g134160' => 'psa', 'Psat7g008640' => 'psa', 'Psat7g185240' => 'psa', 'PSO017G1330' => 'pso', 'PSO063G6097' => 'pso', 'PSO170G0835' => 'pso', 'PSO170G2499' => 'pso', 'PSO210G5058' => 'pso', 'PSO210G6154' => 'pso', 'PSO585G0031' => 'pso', 'PSO832G0264' => 'pso', 'PSO832G4288' => 'pso', 'QL03p027355' => 'qlo', 'QL03p027430' => 'qlo', 'QL04p081380' => 'qlo', 'QL06p015642' => 'qlo', 'QL06p015650' => 'qlo', 'QL06p015686' => 'qlo', 'QL12p042927' => 'qlo', 'QL93p1863_0035' => 'qlo', 'RcHm_v2.0_Chr3g0450581' => 'rch', 'RcHm_v2.0_Chr4g0390371' => 'rch', 'RcHm_v2.0_Chr4g0390381' => 'rch', 'RcHm_v2.0_Chr4g0390491' => 'rch', 'RcHm_v2.0_Chr4g0390501' => 'rch', 'RcHm_v2.0_Chr6g0289231' => 'rch', 'Rhsim04G0190400' => 'rsi', 'Rhsim04G0190500' => 'rsi', 'Rhsim04G0190600' => 'rsi', 'Rhsim13G0031400' => 'rsi', 'Rhsim13G0165600' => 'rsi', 'RhsimUnG0114600' => 'rsi', 'RhsimUnG0114700' => 'rsi', 'Sabra02G0034800' => 'sbr', 'Sabra02G0035100' => 'sbr', 'Sabra05G0168600' => 'sbr', 'Sabra05G0168800' => 'sbr', 'Sabra08G0123700' => 'sbr', 'Sabra10G0031900' => 'sbr', 'Sabra13G0039000' => 'sbr', 'SalBow2G0782' => 'sbo', 'SalBow2G1403' => 'sbo', 'SalBow4G0074' => 'sbo', 'SalBow4G2635' => 'sbo', 'SalBow5G3010' => 'sbo', 'Sc05g0000870' => 'sci', 'Sc05g0000890' => 'sci', 'Sc13g0005000' => 'sci', 'Sc13g0005030' => 'sci', 'Sc19g0003790' => 'sci', 'Sc19g0003800' => 'sci', 'Sed0003467' => 'sed', 'Sed0009355' => 'sed', 'Sed0009894' => 'sed', 'Sed0011972' => 'sed', 'Sed0021483' => 'sed', 'Sed0021750' => 'sed', 'Sed0026279' => 'sed', 'SEGI_05312' => 'sgi', 'SEGI_10112' => 'sgi', 'SEGI_15835' => 'sgi', 'SEGI_30386' => 'sgi', 'SEGI_34122' => 'sgi', 'SEGI_35063' => 'sgi', 'SGA_v2.0_scaffold101G29794' => 'sas', 'SGA_v2.0_scaffold1G00573' => 'sas', 'SGA_v2.0_scaffold79G25637' => 'sas', 'SGA_v2.0_scaffold88G27283' => 'sas', 'SGA_v2.0_scaffold88G27285' => 'sas', 'SGA_v2.0_scaffold88G27331' => 'sas', 'SHI09937' => 'shi', 'SMO119G0302' => 'smo', 'SMO137G0231' => 'smo', 'SMO367G1151' => 'smo', 'Solyc02g082000.3' => 'sly', 'Solyc06g031670.3' => 'sly', 'Solyc06g053810.3' => 'sly', 'Solyc07g025457.1' => 'sly', 'Solyc08g059740.1' => 'sly', 'Solyc08g059750.3' => 'sly', 'Solyc09g083370.3' => 'sly', 'Solyc12g038950.3' => 'sly', 'Sopen02g026630' => 'spe', 'Sopen06g018930' => 'spe', 'Sopen06g018940' => 'spe', 'Sopen08g009460' => 'spe', 'Sopen09g032290' => 'spe', 'Sp1g03080' => 'spa', 'Sp1g03090' => 'spa', 'Sp1g05480' => 'spa', 'Sp2g07860' => 'spa', 'Sp2g08430' => 'spa', 'Sp2g08440' => 'spa', 'Sp2g26200' => 'spa', 'Sp4g13170' => 'spa', 'Sp6g33840' => 'spa', 'SpUn1204_0010' => 'spa', 'TAR365G0908' => 'tar', 'TAR381G1270' => 'tar', 'TAR381G1651' => 'tar', 'TAR625G1131' => 'tar', 'TAR633G0962' => 'tar', 'TAR633G1729' => 'tar', 'TAR633G1864' => 'tar', 'TAR636G0221' => 'tar', 'TAR636G0314' => 'tar', 'TAR636G3202' => 'tar', 'THA.LOC104800805' => 'tha', 'THA.LOC104801096' => 'tha', 'THA.LOC104801555' => 'tha', 'THA.LOC104808491' => 'tha', 'THA.LOC104808595' => 'tha', 'THA.LOC104815985' => 'tha', 'THA.LOC104822250' => 'tha', 'THA.LOC104826071' => 'tha', 'Thecc.01G265200' => 'tca', 'Thecc.01G265300' => 'tca', 'Thecc.01G265700' => 'tca', 'Thecc.03G109100' => 'tca', 'Thecc.04G245900' => 'tca', 'Thecc.04G246000' => 'tca', 'Thhalv10003334m.g' => 'esa', 'Thhalv10005508m.g' => 'esa', 'Thhalv10005643m.g' => 'esa', 'Thhalv10007316m.g' => 'esa', 'Thhalv10009006m.g' => 'esa', 'Thhalv10009309m.g' => 'esa', 'Thhalv10014917m.g' => 'esa', 'Thhalv10014919m.g' => 'esa', 'Thhalv10015393m.g' => 'esa', 'Thhalv10016515m.g' => 'esa', 'Thhalv10029242m.g' => 'esa', 'TPR.G16654' => 'tpr', 'TPR.G20589' => 'tpr', 'TPR.G23029' => 'tpr', 'TPR.G27731' => 'tpr', 'TPR.G28889' => 'tpr', 'TPR.G28899' => 'tpr', 'TPR.G30846' => 'tpr', 'TPR.G5452' => 'tpr', 'TPR.G5713' => 'tpr', 'TPR.G9046' => 'tpr', 'TPR.G9061' => 'tpr', 'TWI09G1075' => 'twi', 'TWI12G0806' => 'twi', 'TWI18G0108' => 'twi', 'TWI53G1361' => 'twi', 'TWI73G0185' => 'twi', 'TWI73G0427' => 'twi', 'unitig_37.g12001' => 'ugi', 'unitig_747.g21660' => 'ugi', 'unitig_748.g7232' => 'ugi', 'unitig_748.g7315' => 'ugi', 'unitig_85.g27262' => 'ugi', 'unitig_92.g28220' => 'ugi', 'vmacro02632' => 'vma', 'vmacro08410' => 'vma', 'vmacro08411' => 'vma', 'vmacro15407' => 'vma', 'VMungo0251G3619' => 'vmu', 'VMungo0720G1204' => 'vmu', 'VMungo0720G1918' => 'vmu', 'VMungo0720G2387' => 'vmu', 'VMungo0720G2961' => 'vmu', 'VMungo1215G2154' => 'vmu', 'VMungo1383G2411' => 'vmu', 'Zm00001eb051130' => 'zma', 'Zm00001eb116830' => 'zma', 'Zm00001eb116850' => 'zma', 'Zm00001eb151740' => 'zma', 'Zm00001eb292360' => 'zma', 'Zm00001eb301640' => 'zma' ) $gf_id = 'HOM05D000856' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000856' ) $data_identifier = 'HOM05D000856' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 13, 'ath' => (int) 10, 'atr' => (int) 1, 'acertr' => (int) 8, 'cqu' => (int) 6, 'bca' => (int) 21, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 11, 'car' => (int) 9, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 8, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 5, 'fan' => (int) 16, 'fve' => (int) 6, 'gma' => (int) 11, 'ghi' => (int) 19, 'gra' => (int) 9, 'vvi' => (int) 7, 'han' => (int) 17, 'cav' => (int) 5, 'hma' => (int) 2, 'vpl' => (int) 2, 'sun' => (int) 7, 'lal' => (int) 9, 'lja' => (int) 5, 'lonja' => (int) 9, 'lsa' => (int) 5, 'mes' => (int) 8, 'mpo' => (int) 3, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 10, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 15, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 9, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 9, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 6, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 5, 'spa' => (int) 10, 'tar' => (int) 10, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 11, 'tpr' => (int) 11, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 4, 'vmu' => (int) 7, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb301640' $species_info = array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ) $local_species = 'spe' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000856', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p00010' => 'bna', 'A03p04160' => 'bna', 'A03p17160' => 'bna', 'A04p23370' => 'bna', 'A05p14860' => 'bna', 'A08p37020' => 'bna', 'A09p08050' => 'bna', 'A09p66800' => 'bna', 'A09p67940' => 'bna', 'A10p02680' => 'bna', 'A10p05320' => 'bna', 'Aa31LG1G20560' => 'aar', 'Aa31LG1G20610' => 'aar', 'Aa31LG1G7810' => 'aar', 'Aa31LG5G3590' => 'aar', 'Aa31LG5G6140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3819' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4683' => 'aag', 'Actinidia04480' => 'ach', 'Actinidia05466' => 'ach', 'Actinidia08445' => 'ach', 'Actinidia21170' => 'ach', 'Actinidia24812' => 'ach', 'Actinidia24951' => 'ach', 'Actinidia40088' => 'ach', 'Ah.02g111660' => 'amhyb', 'Ah.11g048900' => 'amhyb', 'Ah.11g049910' => 'amhyb', 'AL1G13870' => 'aly', 'AL1G13880' => 'aly', 'AL1G16760' => 'aly', 'AL390U10020' => 'aly', 'AL4G25520' => 'aly', 'AL6G19890' => 'aly', 'AL6G19900' => 'aly', 'AL6G19910' => 'aly', 'AL8G40100' => 'aly', 'Aqoxy2G03562' => 'aox', 'Aqoxy5G00316' => 'aox', 'Aqoxy5G00926' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1628KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1H403S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2FU6SJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.882I6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8YRY2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YN1SN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AF70II' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZA8L1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F916KL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHRD8H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KTZ8QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S22EMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8M29T' => 'arhy', 'AT1G04270' => 'ath', 'AT1G04280' => 'ath', 'AT1G06750' => 'ath', 'AT1G33850' => 'ath', 'AT2G30630' => 'ath', 'AT5G09490' => 'ath', 'AT5G09500' => 'ath', 'AT5G09510' => 'ath', 'AT5G43640' => 'ath', 'AT5G63070' => 'ath', 'ATR0605G315' => 'atr', 'Atru.chr11.175' => 'acertr', 'Atru.chr11.653' => 'acertr', 'Atru.chr3.1616' => 'acertr', 'Atru.chr4.2230' => 'acertr', 'Atru.chr4.2232' => 'acertr', 'Atru.chr5.1598' => 'acertr', 'Atru.chr5.1600' => 'acertr', 'Atru.chr5.2188' => 'acertr', 'AUR62008326' => 'cqu', 'AUR62011922' => 'cqu', 'AUR62011924' => 'cqu', 'AUR62021771' => 'cqu', 'AUR62032237' => 'cqu', 'AUR62032240' => 'cqu', 'BcaB01g05572' => 'bca', 'BcaB02g10337' => 'bca', 'BcaB04g19944' => 'bca', 'BcaB05g21548' => 'bca', 'BcaB05g21549' => 'bca', 'BcaB05g23227' => 'bca', 'BcaB06g26256' => 'bca', 'BcaB06g26257' => 'bca', 'BcaB06g28379' => 'bca', 'BcaC02g11159' => 'bca', 'BcaC03g13258' => 'bca', 'BcaC03g13259' => 'bca', 'BcaC05g24456' => 'bca', 'BcaC05g24457' => 'bca', 'BcaC07g36922' => 'bca', 'BcaC07g36923' => 'bca', 'BcaC07g42050' => 'bca', 'BcaC07g42176' => 'bca', 'BcaC07g42195' => 'bca', 'BcaC07g42196' => 'bca', 'BcaNung06674' => 'bca', 'BolC2t06351H' => 'bol', 'BolC2t06352H' => 'bol', 'BolC3t12993H' => 'bol', 'BolC4t23525H' => 'bol', 'BolC4t27475H' => 'bol', 'BolC5t29025H' => 'bol', 'BolC5t29026H' => 'bol', 'BolC8t46898H' => 'bol', 'BolC8t46899H' => 'bol', 'BolC8t52630H' => 'bol', 'BolC8t52765H' => 'bol', 'BolC9t53824H' => 'bol', 'BraA03t09760Z' => 'bra', 'BraA03t10990Z' => 'bra', 'BraA05t20413Z' => 'bra', 'BraA08t35602Z' => 'bra', 'BraA09t36458Z' => 'bra', 'BraA09t42018Z' => 'bra', 'BraA09t42129Z' => 'bra', 'BraA10t42536Z' => 'bra', 'BraA10t42537Z' => 'bra', 'C01p10690' => 'bna', 'C02p03890' => 'bna', 'C02p03900' => 'bna', 'C03p04620' => 'bna', 'C04p19870' => 'bna', 'C04p59670' => 'bna', 'C05p02460' => 'bna', 'C05p02470' => 'bna', 'C08p00980' => 'bna', 'C08p00990' => 'bna', 'C08p51030' => 'bna', 'C08p52360' => 'bna', 'C09p09120' => 'bna', 'CAN.G19.15' => 'can', 'CAN.G251.10' => 'can', 'CAN.G251.9' => 'can', 'CAN.G398.24' => 'can', 'CAN.G410.32' => 'can', 'CAN.G881.2' => 'can', 'CANSAT01G3025' => 'cansat', 'CANSAT78G1211' => 'cansat', 'CANSAT78G1218' => 'cansat', 'CANSAT78G1521' => 'cansat', 'CANSAT78G1670' => 'cansat', 'CARHR003600' => 'chi', 'CARHR003610' => 'chi', 'CARHR006290' => 'chi', 'CARHR006430' => 'chi', 'CARHR124110' => 'chi', 'CARHR203870' => 'chi', 'CARHR203880' => 'chi', 'CARHR203890' => 'chi', 'CARHR276880' => 'chi', 'Carub.0001s0346' => 'cru', 'Carub.0001s0347' => 'cru', 'Carub.0001s0607' => 'cru', 'Carub.0003s2768' => 'cru', 'Carub.0003s2769' => 'cru', 'Carub.0004s1178' => 'cru', 'Carub.0006s0806' => 'cru', 'Carub.0006s0807' => 'cru', 'Carub.0006s0808' => 'cru', 'Carub.0008s0501' => 'cru', 'Carub.0008s2379' => 'cru', 'Ca_08655_v3' => 'car', 'Ca_08922_v3' => 'car', 'Ca_08923_v3' => 'car', 'Ca_09119_v3' => 'car', 'Ca_09703_v3' => 'car', 'Ca_09705_v3' => 'car', 'Ca_09835_v3' => 'car', 'Ca_26403_v3' => 'car', 'Ca_30719_v3' => 'car', 'CBR_g17958' => 'cbr', 'CBR_g40516' => 'cbr', 'Cc00_g05350' => 'ccan', 'Cc01_g18690' => 'ccan', 'Cc03_g04830' => 'ccan', 'Cc03_g04850' => 'ccan', 'CDE02G4469' => 'cde', 'CDE06G0883' => 'cde', 'CDE06G1295' => 'cde', 'CDE06G1390' => 'cde', 'CDE07G0584' => 'cde', 'CDE07G1084' => 'cde', 'CDE08G1259' => 'cde', 'Cfa002341' => 'cfa', 'Cfa024337' => 'cfa', 'Ciclev10004749m.g' => 'ccl', 'Ciclev10006127m.g' => 'ccl', 'Ciclev10019720m.g' => 'ccl', 'Ciclev10022652m.g' => 'ccl', 'CiPaw.01G190400' => 'cil', 'CiPaw.01G190500' => 'cil', 'CiPaw.02G116400' => 'cil', 'CiPaw.02G116500' => 'cil', 'CiPaw.04G183000' => 'cil', 'CiPaw.04G183300' => 'cil', 'ClCG05G004610' => 'cla', 'ClCG05G004620' => 'cla', 'ClCG06G006730' => 'cla', 'ClCG06G006740' => 'cla', 'ClCG11G003690' => 'cla', 'COL.COLO4_08276' => 'col', 'COL.COLO4_08277' => 'col', 'COL.COLO4_15787' => 'col', 'COL.COLO4_15789' => 'col', 'Cpa.g.c44815' => 'cpa', 'Cpa.g.sc52.144' => 'cpa', 'Cpa.g.sc58.46' => 'cpa', 'Cpa.g.sc58.47' => 'cpa', 'Cre08.g360900' => 'cre', 'CsaV3_2G013030' => 'csa', 'CsaV3_2G013050' => 'csa', 'CsaV3_2G015620' => 'csa', 'CsaV3_3G012590' => 'csa', 'CsaV3_3G012600' => 'csa', 'CSS0001641' => 'camsi', 'CSS0008310' => 'camsi', 'CSS0013011' => 'camsi', 'CSS0017147' => 'camsi', 'CSS0022970' => 'camsi', 'CSS0025655' => 'camsi', 'CSS0028665' => 'camsi', 'CSS0029117' => 'camsi', 'CSS0032024' => 'camsi', 'CSS0039681' => 'camsi', 'CSS0046516' => 'camsi', 'CSS0050307' => 'camsi', 'DCAR_005871' => 'dca', 'DCAR_007342' => 'dca', 'DCAR_024228' => 'dca', 'DCAR_027277' => 'dca', 'DCAR_030718' => 'dca', 'Dinv20287' => 'din', 'Dinv22461' => 'din', 'Dinv22464' => 'din', 'Dinv29912' => 'din', 'Dinv29913' => 'din', 'Dinv34580' => 'din', 'Dinv34582' => 'din', 'Dinv44632' => 'din', 'Duzib052G0266' => 'dzi', 'Duzib133G0907' => 'dzi', 'Duzib133G1034' => 'dzi', 'Duzib138G0207' => 'dzi', 'Duzib138G0491' => 'dzi', 'Duzib151G0812' => 'dzi', 'Duzib151G1166' => 'dzi', 'Duzib168G0192' => 'dzi', 'Duzib211G0077' => 'dzi', 'Duzib212G0429' => 'dzi', 'Duzib212G0472' => 'dzi', 'ECA233G2617' => 'eca', 'ECA236G4188' => 'eca', 'ECA240G0936' => 'eca', 'ECA240G1129' => 'eca', 'ECA247G0623' => 'eca', 'EL10Ac5g10451' => 'bvu', 'EL10Ac5g10453' => 'bvu', 'EL10Ac5g10894' => 'bvu', 'Eucgr.H00192' => 'egr', 'Eucgr.H00193' => 'egr', 'Eucgr.H00194' => 'egr', 'Eucgr.J01562' => 'egr', 'Eucgr.K03301' => 'egr', 'FAN02G0632' => 'fan', 'FAN05G5378' => 'fan', 'FAN09G3247' => 'fan', 'FAN12G0435' => 'fan', 'FAN12G2426' => 'fan', 'FAN14G1707' => 'fan', 'FAN14G4725' => 'fan', 'FAN15G2071' => 'fan', 'FAN17G3065' => 'fan', 'FAN19G1376' => 'fan', 'FAN20G0354' => 'fan', 'FAN20G2429' => 'fan', 'FAN20G2658' => 'fan', 'FAN24G2343' => 'fan', 'FAN27G2362' => 'fan', 'FAN28G1765' => 'fan', 'FvH4_1g16020' => 'fve', 'FvH4_2g04890' => 'fve', 'FvH4_2g22270' => 'fve', 'FvH4_4g02630' => 'fve', 'FvH4_4g02640' => 'fve', 'FvH4_6g02650' => 'fve', 'Glyma.02G140600' => 'gma', 'Glyma.03G159900' => 'gma', 'Glyma.05G234800' => 'gma', 'Glyma.07G269600' => 'gma', 'Glyma.08G042300' => 'gma', 'Glyma.10G033500' => 'gma', 'Glyma.10G185200' => 'gma', 'Glyma.17G004300' => 'gma', 'Glyma.19G161900' => 'gma', 'Glyma.20G205100' => 'gma', 'Glyma.20G205200' => 'gma', 'Gohir.A01G139101' => 'ghi', 'Gohir.A02G035600' => 'ghi', 'Gohir.A02G117901' => 'ghi', 'Gohir.A07G210100' => 'ghi', 'Gohir.A07G210200' => 'ghi', 'Gohir.A08G061100' => 'ghi', 'Gohir.A09G223000' => 'ghi', 'Gohir.A09G223100' => 'ghi', 'Gohir.A10G113900' => 'ghi', 'Gohir.A10G114000' => 'ghi', 'Gohir.D02G042300' => 'ghi', 'Gohir.D07G216100' => 'ghi', 'Gohir.D07G216200' => 'ghi', 'Gohir.D08G070400' => 'ghi', 'Gohir.D09G225000' => 'ghi', 'Gohir.D09G225100' => 'ghi', 'Gohir.D10G152300' => 'ghi', 'Gohir.D10G153200' => 'ghi', 'Gohir.D11G133701' => 'ghi', 'Gorai.004G074100' => 'gra', 'Gorai.005G046800' => 'gra', 'Gorai.006G246500' => 'gra', 'Gorai.006G246600' => 'gra', 'Gorai.007G142900' => 'gra', 'Gorai.011G171000' => 'gra', 'Gorai.011G171100' => 'gra', 'Gorai.013G104300' => 'gra', 'Gorai.013G104400' => 'gra', 'GSVIVG01000754001' => 'vvi', 'GSVIVG01000756001' => 'vvi', 'GSVIVG01010903001' => 'vvi', 'GSVIVG01017623001' => 'vvi', 'GSVIVG01018113001' => 'vvi', 'GSVIVG01018116001' => 'vvi', 'GSVIVG01018118001' => 'vvi', 'HanXRQChr03g0076211' => 'han', 'HanXRQChr03g0092431' => 'han', 'HanXRQChr03g0092441' => 'han', 'HanXRQChr03g0092591' => 'han', 'HanXRQChr03g0092671' => 'han', 'HanXRQChr03g0092681' => 'han', 'HanXRQChr03g0092691' => 'han', 'HanXRQChr03g0092701' => 'han', 'HanXRQChr03g0092721' => 'han', 'HanXRQChr03g0092731' => 'han', 'HanXRQChr04g0113681' => 'han', 'HanXRQChr10g0281371' => 'han', 'HanXRQChr11g0337141' => 'han', 'HanXRQChr13g0424521' => 'han', 'HanXRQChr13g0424531' => 'han', 'HanXRQChr13g0424541' => 'han', 'HanXRQChr16g0498221' => 'han', 'Haze_04377' => 'cav', 'Haze_11298' => 'cav', 'Haze_24547' => 'cav', 'Haze_24550' => 'cav', 'Haze_26587' => 'cav', 'Hma1.2p1_0650F.1_g195410' => 'hma', 'Hma1.2p1_0893F.1_g233470' => 'hma', 'HPP92_006508' => 'vpl', 'HPP92_024780' => 'vpl', 'Hund02688' => 'sun', 'Hund09380' => 'sun', 'Hund09381' => 'sun', 'Hund09832' => 'sun', 'Hund09833' => 'sun', 'Hund11351' => 'sun', 'Hund11513' => 'sun', 'Lalb_Chr06g0162591' => 'lal', 'Lalb_Chr06g0162601' => 'lal', 'Lalb_Chr06g0169321' => 'lal', 'Lalb_Chr09g0330951' => 'lal', 'Lalb_Chr16g0387631' => 'lal', 'Lalb_Chr21g0306241' => 'lal', 'Lalb_Chr25g0290051' => 'lal', 'Lalb_Chr25g0290061' => 'lal', 'Lalb_Chr25g0290071' => 'lal', 'Lj1g0003876' => 'lja', 'Lj1P1207T36' => 'lonja', 'Lj2C1156G12' => 'lonja', 'Lj3A793G39' => 'lonja', 'Lj3C580G2' => 'lonja', 'Lj3C780G2' => 'lonja', 'Lj3C780T4' => 'lonja', 'Lj3C793G9' => 'lonja', 'Lj4g0012960' => 'lja', 'Lj5g0021252' => 'lja', 'Lj5g0021484' => 'lja', 'Lj5g0024528' => 'lja', 'Lj6A399T12' => 'lonja', 'Lj6A656G65' => 'lonja', 'Lsat_1_v5_gn_3_125500' => 'lsa', 'Lsat_1_v5_gn_3_125540' => 'lsa', 'Lsat_1_v5_gn_5_72701' => 'lsa', 'Lsat_1_v5_gn_8_91560' => 'lsa', 'Lsat_1_v5_gn_9_9640' => 'lsa', 'Manes.01G200600' => 'mes', 'Manes.01G200700' => 'mes', 'Manes.03G168900' => 'mes', 'Manes.03G169000' => 'mes', 'Manes.05G085801' => 'mes', 'Manes.05G086200' => 'mes', 'Manes.15G036700' => 'mes', 'Manes.15G036900' => 'mes', 'Mapoly0004s0172' => 'mpo', 'Mapoly0023s0001' => 'mpo', 'Mapoly0142s0012' => 'mpo', 'MBI01_g32854_MAGBIO' => 'mbi', 'MBI11_g24427_MAGBIO' => 'mbi', 'MBI11_g47319_MAGBIO' => 'mbi', 'MCO01G433' => 'mco', 'MD00G1187800' => 'mdo', 'MD04G1226500' => 'mdo', 'MD05G1203900' => 'mdo', 'MD10G1191100' => 'mdo', 'MD12G1243500' => 'mdo', 'MD13G1207000' => 'mdo', 'MD13G1207100' => 'mdo', 'MD16G1208600' => 'mdo', 'Medtr1g050352' => 'mtr', 'Medtr1g070385' => 'mtr', 'Medtr1g070450' => 'mtr', 'Medtr1g075200' => 'mtr', 'Medtr1g075250' => 'mtr', 'Medtr1g075260' => 'mtr', 'Medtr1g475250' => 'mtr', 'Medtr4g075450' => 'mtr', 'Medtr7g096300' => 'mtr', 'Medtr8g105110' => 'mtr', 'MELO3C006470.2' => 'cme', 'MELO3C006471.2' => 'cme', 'MELO3C020772.2' => 'cme', 'MELO3C026780.2' => 'cme', 'MELO3C026781.2' => 'cme', 'Migut.D00390' => 'egut', 'Migut.G00435' => 'egut', 'Migut.G00436' => 'egut', 'Migut.G00718' => 'egut', 'MSTRG.21891' => 'ama', 'MSTRG.26910' => 'ama', 'MSTRG.4099' => 'ama', 'MSTRG.9925' => 'ama', 'Nitab4.5_0000165g0010' => 'nta', 'Nitab4.5_0000209g0180' => 'nta', 'Nitab4.5_0000244g0440' => 'nta', 'Nitab4.5_0000525g0220' => 'nta', 'Nitab4.5_0001597g0020' => 'nta', 'Nitab4.5_0001878g0040' => 'nta', 'Nitab4.5_0001878g0060' => 'nta', 'Nitab4.5_0002838g0100' => 'nta', 'Nitab4.5_0002838g0120' => 'nta', 'Nitab4.5_0004798g0030' => 'nta', 'Nitab4.5_0005420g0010' => 'nta', 'Nitab4.5_0005507g0010' => 'nta', 'Nitab4.5_0005574g0020' => 'nta', 'Nitab4.5_0005838g0010' => 'nta', 'Nitab4.5_0010580g0020' => 'nta', 'Nn1g02599' => 'nnu', 'Nn1g02608' => 'nnu', 'Nn3g17742' => 'nnu', 'Nn3g19534' => 'nnu', 'Nn3g19535' => 'nnu', 'Oeu008790.1' => 'oeu', 'Oeu008792.1' => 'oeu', 'Oeu032590.1' => 'oeu', 'Oeu035349.1' => 'oeu', 'Oeu049791.1' => 'oeu', 'Os01g0774500' => 'osa', 'Os03g0628800' => 'osa', 'Os03g0798600' => 'osa', 'Os05g0508800' => 'osa', 'Peaxi162Scf00036g02018' => 'pax', 'Peaxi162Scf00578g00032' => 'pax', 'Peaxi162Scf00578g00317' => 'pax', 'Peaxi162Scf00785g00114' => 'pax', 'Peaxi162Scf00813g00119' => 'pax', 'Peaxi162Scf00906g00227' => 'pax', 'PGR004G0875' => 'pgr', 'PGR004G2424' => 'pgr', 'PGR031G1239' => 'pgr', 'PGR031G2474' => 'pgr', 'PGR044G0423' => 'pgr', 'PGSC0003DMG400001128' => 'stu', 'PGSC0003DMG400007336' => 'stu', 'PGSC0003DMG400016318' => 'stu', 'PGSC0003DMG400016319' => 'stu', 'PGSC0003DMG400018074' => 'stu', 'Phvul.001G157700' => 'pvu', 'Phvul.002G148550' => 'pvu', 'Phvul.002G320200' => 'pvu', 'Phvul.003G089200' => 'pvu', 'Phvul.007G126000' => 'pvu', 'Phvul.007G126100' => 'pvu', 'Phvul.007G178000' => 'pvu', 'Phvul.007G178200' => 'pvu', 'Potri.002G043000' => 'ptr', 'Potri.002G043200' => 'ptr', 'Potri.003G123750' => 'ptr', 'Potri.005G055401' => 'ptr', 'Potri.005G219700' => 'ptr', 'Potri.005G220000' => 'ptr', 'Potri.008G161901' => 'ptr', 'Potri.008G162000' => 'ptr', 'Potri.008G162400' => 'ptr', 'Potri.010G076900' => 'ptr', 'Pp3c12_9180' => 'ppa', 'Pp3c13_19770' => 'ppa', 'Pp3c14_22950' => 'ppa', 'Pp3c16_12160' => 'ppa', 'Pp3c27_7820' => 'ppa', 'Pp3c2_3490' => 'ppa', 'Pp3c3_23700' => 'ppa', 'Pp3c3_36520' => 'ppa', 'Pp3c4_15250' => 'ppa', 'PRCOL_00007002' => 'pco', 'Prupe.1G030600' => 'ppe', 'Prupe.1G030700' => 'ppe', 'Prupe.6G345200' => 'ppe', 'Prupe.8G230300' => 'ppe', 'Prupe.8G230500' => 'ppe', 'Psat3g059600' => 'psa', 'Psat5g200920' => 'psa', 'Psat6g056440' => 'psa', 'Psat6g057360' => 'psa', 'Psat6g134120' => 'psa', 'Psat6g134160' => 'psa', 'Psat7g008640' => 'psa', 'Psat7g185240' => 'psa', 'PSO017G1330' => 'pso', 'PSO063G6097' => 'pso', 'PSO170G0835' => 'pso', 'PSO170G2499' => 'pso', 'PSO210G5058' => 'pso', 'PSO210G6154' => 'pso', 'PSO585G0031' => 'pso', 'PSO832G0264' => 'pso', 'PSO832G4288' => 'pso', 'QL03p027355' => 'qlo', 'QL03p027430' => 'qlo', 'QL04p081380' => 'qlo', 'QL06p015642' => 'qlo', 'QL06p015650' => 'qlo', 'QL06p015686' => 'qlo', 'QL12p042927' => 'qlo', 'QL93p1863_0035' => 'qlo', 'RcHm_v2.0_Chr3g0450581' => 'rch', 'RcHm_v2.0_Chr4g0390371' => 'rch', 'RcHm_v2.0_Chr4g0390381' => 'rch', 'RcHm_v2.0_Chr4g0390491' => 'rch', 'RcHm_v2.0_Chr4g0390501' => 'rch', 'RcHm_v2.0_Chr6g0289231' => 'rch', 'Rhsim04G0190400' => 'rsi', 'Rhsim04G0190500' => 'rsi', 'Rhsim04G0190600' => 'rsi', 'Rhsim13G0031400' => 'rsi', 'Rhsim13G0165600' => 'rsi', 'RhsimUnG0114600' => 'rsi', 'RhsimUnG0114700' => 'rsi', 'Sabra02G0034800' => 'sbr', 'Sabra02G0035100' => 'sbr', 'Sabra05G0168600' => 'sbr', 'Sabra05G0168800' => 'sbr', 'Sabra08G0123700' => 'sbr', 'Sabra10G0031900' => 'sbr', 'Sabra13G0039000' => 'sbr', 'SalBow2G0782' => 'sbo', 'SalBow2G1403' => 'sbo', 'SalBow4G0074' => 'sbo', 'SalBow4G2635' => 'sbo', 'SalBow5G3010' => 'sbo', 'Sc05g0000870' => 'sci', 'Sc05g0000890' => 'sci', 'Sc13g0005000' => 'sci', 'Sc13g0005030' => 'sci', 'Sc19g0003790' => 'sci', 'Sc19g0003800' => 'sci', 'Sed0003467' => 'sed', 'Sed0009355' => 'sed', 'Sed0009894' => 'sed', 'Sed0011972' => 'sed', 'Sed0021483' => 'sed', 'Sed0021750' => 'sed', 'Sed0026279' => 'sed', 'SEGI_05312' => 'sgi', 'SEGI_10112' => 'sgi', 'SEGI_15835' => 'sgi', 'SEGI_30386' => 'sgi', 'SEGI_34122' => 'sgi', 'SEGI_35063' => 'sgi', 'SGA_v2.0_scaffold101G29794' => 'sas', 'SGA_v2.0_scaffold1G00573' => 'sas', 'SGA_v2.0_scaffold79G25637' => 'sas', 'SGA_v2.0_scaffold88G27283' => 'sas', 'SGA_v2.0_scaffold88G27285' => 'sas', 'SGA_v2.0_scaffold88G27331' => 'sas', 'SHI09937' => 'shi', 'SMO119G0302' => 'smo', 'SMO137G0231' => 'smo', 'SMO367G1151' => 'smo', 'Solyc02g082000.3' => 'sly', 'Solyc06g031670.3' => 'sly', 'Solyc06g053810.3' => 'sly', 'Solyc07g025457.1' => 'sly', 'Solyc08g059740.1' => 'sly', 'Solyc08g059750.3' => 'sly', 'Solyc09g083370.3' => 'sly', 'Solyc12g038950.3' => 'sly', 'Sopen02g026630' => 'spe', 'Sopen06g018930' => 'spe', 'Sopen06g018940' => 'spe', 'Sopen08g009460' => 'spe', 'Sopen09g032290' => 'spe', 'Sp1g03080' => 'spa', 'Sp1g03090' => 'spa', 'Sp1g05480' => 'spa', 'Sp2g07860' => 'spa', 'Sp2g08430' => 'spa', 'Sp2g08440' => 'spa', 'Sp2g26200' => 'spa', 'Sp4g13170' => 'spa', 'Sp6g33840' => 'spa', 'SpUn1204_0010' => 'spa', 'TAR365G0908' => 'tar', 'TAR381G1270' => 'tar', 'TAR381G1651' => 'tar', 'TAR625G1131' => 'tar', 'TAR633G0962' => 'tar', 'TAR633G1729' => 'tar', 'TAR633G1864' => 'tar', 'TAR636G0221' => 'tar', 'TAR636G0314' => 'tar', 'TAR636G3202' => 'tar', 'THA.LOC104800805' => 'tha', 'THA.LOC104801096' => 'tha', 'THA.LOC104801555' => 'tha', 'THA.LOC104808491' => 'tha', 'THA.LOC104808595' => 'tha', 'THA.LOC104815985' => 'tha', 'THA.LOC104822250' => 'tha', 'THA.LOC104826071' => 'tha', 'Thecc.01G265200' => 'tca', 'Thecc.01G265300' => 'tca', 'Thecc.01G265700' => 'tca', 'Thecc.03G109100' => 'tca', 'Thecc.04G245900' => 'tca', 'Thecc.04G246000' => 'tca', 'Thhalv10003334m.g' => 'esa', 'Thhalv10005508m.g' => 'esa', 'Thhalv10005643m.g' => 'esa', 'Thhalv10007316m.g' => 'esa', 'Thhalv10009006m.g' => 'esa', 'Thhalv10009309m.g' => 'esa', 'Thhalv10014917m.g' => 'esa', 'Thhalv10014919m.g' => 'esa', 'Thhalv10015393m.g' => 'esa', 'Thhalv10016515m.g' => 'esa', 'Thhalv10029242m.g' => 'esa', 'TPR.G16654' => 'tpr', 'TPR.G20589' => 'tpr', 'TPR.G23029' => 'tpr', 'TPR.G27731' => 'tpr', 'TPR.G28889' => 'tpr', 'TPR.G28899' => 'tpr', 'TPR.G30846' => 'tpr', 'TPR.G5452' => 'tpr', 'TPR.G5713' => 'tpr', 'TPR.G9046' => 'tpr', 'TPR.G9061' => 'tpr', 'TWI09G1075' => 'twi', 'TWI12G0806' => 'twi', 'TWI18G0108' => 'twi', 'TWI53G1361' => 'twi', 'TWI73G0185' => 'twi', 'TWI73G0427' => 'twi', 'unitig_37.g12001' => 'ugi', 'unitig_747.g21660' => 'ugi', 'unitig_748.g7232' => 'ugi', 'unitig_748.g7315' => 'ugi', 'unitig_85.g27262' => 'ugi', 'unitig_92.g28220' => 'ugi', 'vmacro02632' => 'vma', 'vmacro08410' => 'vma', 'vmacro08411' => 'vma', 'vmacro15407' => 'vma', 'VMungo0251G3619' => 'vmu', 'VMungo0720G1204' => 'vmu', 'VMungo0720G1918' => 'vmu', 'VMungo0720G2387' => 'vmu', 'VMungo0720G2961' => 'vmu', 'VMungo1215G2154' => 'vmu', 'VMungo1383G2411' => 'vmu', 'Zm00001eb051130' => 'zma', 'Zm00001eb116830' => 'zma', 'Zm00001eb116850' => 'zma', 'Zm00001eb151740' => 'zma', 'Zm00001eb292360' => 'zma', 'Zm00001eb301640' => 'zma' ), 'gf_id' => 'HOM05D000856', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000856' ), 'data_identifier' => 'HOM05D000856', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000856', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p00010' => 'bna', 'A03p04160' => 'bna', 'A03p17160' => 'bna', 'A04p23370' => 'bna', 'A05p14860' => 'bna', 'A08p37020' => 'bna', 'A09p08050' => 'bna', 'A09p66800' => 'bna', 'A09p67940' => 'bna', 'A10p02680' => 'bna', 'A10p05320' => 'bna', 'Aa31LG1G20560' => 'aar', 'Aa31LG1G20610' => 'aar', 'Aa31LG1G7810' => 'aar', 'Aa31LG5G3590' => 'aar', 'Aa31LG5G6140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3819' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4683' => 'aag', 'Actinidia04480' => 'ach', 'Actinidia05466' => 'ach', 'Actinidia08445' => 'ach', 'Actinidia21170' => 'ach', 'Actinidia24812' => 'ach', 'Actinidia24951' => 'ach', 'Actinidia40088' => 'ach', 'Ah.02g111660' => 'amhyb', 'Ah.11g048900' => 'amhyb', 'Ah.11g049910' => 'amhyb', 'AL1G13870' => 'aly', 'AL1G13880' => 'aly', 'AL1G16760' => 'aly', 'AL390U10020' => 'aly', 'AL4G25520' => 'aly', 'AL6G19890' => 'aly', 'AL6G19900' => 'aly', 'AL6G19910' => 'aly', 'AL8G40100' => 'aly', 'Aqoxy2G03562' => 'aox', 'Aqoxy5G00316' => 'aox', 'Aqoxy5G00926' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1628KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1H403S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2FU6SJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.882I6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8YRY2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YN1SN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AF70II' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZA8L1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F916KL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHRD8H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KTZ8QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S22EMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8M29T' => 'arhy', 'AT1G04270' => 'ath', 'AT1G04280' => 'ath', 'AT1G06750' => 'ath', 'AT1G33850' => 'ath', 'AT2G30630' => 'ath', 'AT5G09490' => 'ath', 'AT5G09500' => 'ath', 'AT5G09510' => 'ath', 'AT5G43640' => 'ath', 'AT5G63070' => 'ath', 'ATR0605G315' => 'atr', 'Atru.chr11.175' => 'acertr', 'Atru.chr11.653' => 'acertr', 'Atru.chr3.1616' => 'acertr', 'Atru.chr4.2230' => 'acertr', 'Atru.chr4.2232' => 'acertr', 'Atru.chr5.1598' => 'acertr', 'Atru.chr5.1600' => 'acertr', 'Atru.chr5.2188' => 'acertr', 'AUR62008326' => 'cqu', 'AUR62011922' => 'cqu', 'AUR62011924' => 'cqu', 'AUR62021771' => 'cqu', 'AUR62032237' => 'cqu', 'AUR62032240' => 'cqu', 'BcaB01g05572' => 'bca', 'BcaB02g10337' => 'bca', 'BcaB04g19944' => 'bca', 'BcaB05g21548' => 'bca', 'BcaB05g21549' => 'bca', 'BcaB05g23227' => 'bca', 'BcaB06g26256' => 'bca', 'BcaB06g26257' => 'bca', 'BcaB06g28379' => 'bca', 'BcaC02g11159' => 'bca', 'BcaC03g13258' => 'bca', 'BcaC03g13259' => 'bca', 'BcaC05g24456' => 'bca', 'BcaC05g24457' => 'bca', 'BcaC07g36922' => 'bca', 'BcaC07g36923' => 'bca', 'BcaC07g42050' => 'bca', 'BcaC07g42176' => 'bca', 'BcaC07g42195' => 'bca', 'BcaC07g42196' => 'bca', 'BcaNung06674' => 'bca', 'BolC2t06351H' => 'bol', 'BolC2t06352H' => 'bol', 'BolC3t12993H' => 'bol', 'BolC4t23525H' => 'bol', 'BolC4t27475H' => 'bol', 'BolC5t29025H' => 'bol', 'BolC5t29026H' => 'bol', 'BolC8t46898H' => 'bol', 'BolC8t46899H' => 'bol', 'BolC8t52630H' => 'bol', 'BolC8t52765H' => 'bol', 'BolC9t53824H' => 'bol', 'BraA03t09760Z' => 'bra', 'BraA03t10990Z' => 'bra', 'BraA05t20413Z' => 'bra', 'BraA08t35602Z' => 'bra', 'BraA09t36458Z' => 'bra', 'BraA09t42018Z' => 'bra', 'BraA09t42129Z' => 'bra', 'BraA10t42536Z' => 'bra', 'BraA10t42537Z' => 'bra', 'C01p10690' => 'bna', 'C02p03890' => 'bna', 'C02p03900' => 'bna', 'C03p04620' => 'bna', 'C04p19870' => 'bna', 'C04p59670' => 'bna', 'C05p02460' => 'bna', 'C05p02470' => 'bna', 'C08p00980' => 'bna', 'C08p00990' => 'bna', 'C08p51030' => 'bna', 'C08p52360' => 'bna', 'C09p09120' => 'bna', 'CAN.G19.15' => 'can', 'CAN.G251.10' => 'can', 'CAN.G251.9' => 'can', 'CAN.G398.24' => 'can', 'CAN.G410.32' => 'can', 'CAN.G881.2' => 'can', 'CANSAT01G3025' => 'cansat', 'CANSAT78G1211' => 'cansat', 'CANSAT78G1218' => 'cansat', 'CANSAT78G1521' => 'cansat', 'CANSAT78G1670' => 'cansat', 'CARHR003600' => 'chi', 'CARHR003610' => 'chi', 'CARHR006290' => 'chi', 'CARHR006430' => 'chi', 'CARHR124110' => 'chi', 'CARHR203870' => 'chi', 'CARHR203880' => 'chi', 'CARHR203890' => 'chi', 'CARHR276880' => 'chi', 'Carub.0001s0346' => 'cru', 'Carub.0001s0347' => 'cru', 'Carub.0001s0607' => 'cru', 'Carub.0003s2768' => 'cru', 'Carub.0003s2769' => 'cru', 'Carub.0004s1178' => 'cru', 'Carub.0006s0806' => 'cru', 'Carub.0006s0807' => 'cru', 'Carub.0006s0808' => 'cru', 'Carub.0008s0501' => 'cru', 'Carub.0008s2379' => 'cru', 'Ca_08655_v3' => 'car', 'Ca_08922_v3' => 'car', 'Ca_08923_v3' => 'car', 'Ca_09119_v3' => 'car', 'Ca_09703_v3' => 'car', 'Ca_09705_v3' => 'car', 'Ca_09835_v3' => 'car', 'Ca_26403_v3' => 'car', 'Ca_30719_v3' => 'car', 'CBR_g17958' => 'cbr', 'CBR_g40516' => 'cbr', 'Cc00_g05350' => 'ccan', 'Cc01_g18690' => 'ccan', 'Cc03_g04830' => 'ccan', 'Cc03_g04850' => 'ccan', 'CDE02G4469' => 'cde', 'CDE06G0883' => 'cde', 'CDE06G1295' => 'cde', 'CDE06G1390' => 'cde', 'CDE07G0584' => 'cde', 'CDE07G1084' => 'cde', 'CDE08G1259' => 'cde', 'Cfa002341' => 'cfa', 'Cfa024337' => 'cfa', 'Ciclev10004749m.g' => 'ccl', 'Ciclev10006127m.g' => 'ccl', 'Ciclev10019720m.g' => 'ccl', 'Ciclev10022652m.g' => 'ccl', 'CiPaw.01G190400' => 'cil', 'CiPaw.01G190500' => 'cil', 'CiPaw.02G116400' => 'cil', 'CiPaw.02G116500' => 'cil', 'CiPaw.04G183000' => 'cil', 'CiPaw.04G183300' => 'cil', 'ClCG05G004610' => 'cla', 'ClCG05G004620' => 'cla', 'ClCG06G006730' => 'cla', 'ClCG06G006740' => 'cla', 'ClCG11G003690' => 'cla', 'COL.COLO4_08276' => 'col', 'COL.COLO4_08277' => 'col', 'COL.COLO4_15787' => 'col', 'COL.COLO4_15789' => 'col', 'Cpa.g.c44815' => 'cpa', 'Cpa.g.sc52.144' => 'cpa', 'Cpa.g.sc58.46' => 'cpa', 'Cpa.g.sc58.47' => 'cpa', 'Cre08.g360900' => 'cre', 'CsaV3_2G013030' => 'csa', 'CsaV3_2G013050' => 'csa', 'CsaV3_2G015620' => 'csa', 'CsaV3_3G012590' => 'csa', 'CsaV3_3G012600' => 'csa', 'CSS0001641' => 'camsi', 'CSS0008310' => 'camsi', 'CSS0013011' => 'camsi', 'CSS0017147' => 'camsi', 'CSS0022970' => 'camsi', 'CSS0025655' => 'camsi', 'CSS0028665' => 'camsi', 'CSS0029117' => 'camsi', 'CSS0032024' => 'camsi', 'CSS0039681' => 'camsi', 'CSS0046516' => 'camsi', 'CSS0050307' => 'camsi', 'DCAR_005871' => 'dca', 'DCAR_007342' => 'dca', 'DCAR_024228' => 'dca', 'DCAR_027277' => 'dca', 'DCAR_030718' => 'dca', 'Dinv20287' => 'din', 'Dinv22461' => 'din', 'Dinv22464' => 'din', 'Dinv29912' => 'din', 'Dinv29913' => 'din', 'Dinv34580' => 'din', 'Dinv34582' => 'din', 'Dinv44632' => 'din', 'Duzib052G0266' => 'dzi', 'Duzib133G0907' => 'dzi', 'Duzib133G1034' => 'dzi', 'Duzib138G0207' => 'dzi', 'Duzib138G0491' => 'dzi', 'Duzib151G0812' => 'dzi', 'Duzib151G1166' => 'dzi', 'Duzib168G0192' => 'dzi', 'Duzib211G0077' => 'dzi', 'Duzib212G0429' => 'dzi', 'Duzib212G0472' => 'dzi', 'ECA233G2617' => 'eca', 'ECA236G4188' => 'eca', 'ECA240G0936' => 'eca', 'ECA240G1129' => 'eca', 'ECA247G0623' => 'eca', 'EL10Ac5g10451' => 'bvu', 'EL10Ac5g10453' => 'bvu', 'EL10Ac5g10894' => 'bvu', 'Eucgr.H00192' => 'egr', 'Eucgr.H00193' => 'egr', 'Eucgr.H00194' => 'egr', 'Eucgr.J01562' => 'egr', 'Eucgr.K03301' => 'egr', 'FAN02G0632' => 'fan', 'FAN05G5378' => 'fan', 'FAN09G3247' => 'fan', 'FAN12G0435' => 'fan', 'FAN12G2426' => 'fan', 'FAN14G1707' => 'fan', 'FAN14G4725' => 'fan', 'FAN15G2071' => 'fan', 'FAN17G3065' => 'fan', 'FAN19G1376' => 'fan', 'FAN20G0354' => 'fan', 'FAN20G2429' => 'fan', 'FAN20G2658' => 'fan', 'FAN24G2343' => 'fan', 'FAN27G2362' => 'fan', 'FAN28G1765' => 'fan', 'FvH4_1g16020' => 'fve', 'FvH4_2g04890' => 'fve', 'FvH4_2g22270' => 'fve', 'FvH4_4g02630' => 'fve', 'FvH4_4g02640' => 'fve', 'FvH4_6g02650' => 'fve', 'Glyma.02G140600' => 'gma', 'Glyma.03G159900' => 'gma', 'Glyma.05G234800' => 'gma', 'Glyma.07G269600' => 'gma', 'Glyma.08G042300' => 'gma', 'Glyma.10G033500' => 'gma', 'Glyma.10G185200' => 'gma', 'Glyma.17G004300' => 'gma', 'Glyma.19G161900' => 'gma', 'Glyma.20G205100' => 'gma', 'Glyma.20G205200' => 'gma', 'Gohir.A01G139101' => 'ghi', 'Gohir.A02G035600' => 'ghi', 'Gohir.A02G117901' => 'ghi', 'Gohir.A07G210100' => 'ghi', 'Gohir.A07G210200' => 'ghi', 'Gohir.A08G061100' => 'ghi', 'Gohir.A09G223000' => 'ghi', 'Gohir.A09G223100' => 'ghi', 'Gohir.A10G113900' => 'ghi', 'Gohir.A10G114000' => 'ghi', 'Gohir.D02G042300' => 'ghi', 'Gohir.D07G216100' => 'ghi', 'Gohir.D07G216200' => 'ghi', 'Gohir.D08G070400' => 'ghi', 'Gohir.D09G225000' => 'ghi', 'Gohir.D09G225100' => 'ghi', 'Gohir.D10G152300' => 'ghi', 'Gohir.D10G153200' => 'ghi', 'Gohir.D11G133701' => 'ghi', 'Gorai.004G074100' => 'gra', 'Gorai.005G046800' => 'gra', 'Gorai.006G246500' => 'gra', 'Gorai.006G246600' => 'gra', 'Gorai.007G142900' => 'gra', 'Gorai.011G171000' => 'gra', 'Gorai.011G171100' => 'gra', 'Gorai.013G104300' => 'gra', 'Gorai.013G104400' => 'gra', 'GSVIVG01000754001' => 'vvi', 'GSVIVG01000756001' => 'vvi', 'GSVIVG01010903001' => 'vvi', 'GSVIVG01017623001' => 'vvi', 'GSVIVG01018113001' => 'vvi', 'GSVIVG01018116001' => 'vvi', 'GSVIVG01018118001' => 'vvi', 'HanXRQChr03g0076211' => 'han', 'HanXRQChr03g0092431' => 'han', 'HanXRQChr03g0092441' => 'han', 'HanXRQChr03g0092591' => 'han', 'HanXRQChr03g0092671' => 'han', 'HanXRQChr03g0092681' => 'han', 'HanXRQChr03g0092691' => 'han', 'HanXRQChr03g0092701' => 'han', 'HanXRQChr03g0092721' => 'han', 'HanXRQChr03g0092731' => 'han', 'HanXRQChr04g0113681' => 'han', 'HanXRQChr10g0281371' => 'han', 'HanXRQChr11g0337141' => 'han', 'HanXRQChr13g0424521' => 'han', 'HanXRQChr13g0424531' => 'han', 'HanXRQChr13g0424541' => 'han', 'HanXRQChr16g0498221' => 'han', 'Haze_04377' => 'cav', 'Haze_11298' => 'cav', 'Haze_24547' => 'cav', 'Haze_24550' => 'cav', 'Haze_26587' => 'cav', 'Hma1.2p1_0650F.1_g195410' => 'hma', 'Hma1.2p1_0893F.1_g233470' => 'hma', 'HPP92_006508' => 'vpl', 'HPP92_024780' => 'vpl', 'Hund02688' => 'sun', 'Hund09380' => 'sun', 'Hund09381' => 'sun', 'Hund09832' => 'sun', 'Hund09833' => 'sun', 'Hund11351' => 'sun', 'Hund11513' => 'sun', 'Lalb_Chr06g0162591' => 'lal', 'Lalb_Chr06g0162601' => 'lal', 'Lalb_Chr06g0169321' => 'lal', 'Lalb_Chr09g0330951' => 'lal', 'Lalb_Chr16g0387631' => 'lal', 'Lalb_Chr21g0306241' => 'lal', 'Lalb_Chr25g0290051' => 'lal', 'Lalb_Chr25g0290061' => 'lal', 'Lalb_Chr25g0290071' => 'lal', 'Lj1g0003876' => 'lja', 'Lj1P1207T36' => 'lonja', 'Lj2C1156G12' => 'lonja', 'Lj3A793G39' => 'lonja', 'Lj3C580G2' => 'lonja', 'Lj3C780G2' => 'lonja', 'Lj3C780T4' => 'lonja', 'Lj3C793G9' => 'lonja', 'Lj4g0012960' => 'lja', 'Lj5g0021252' => 'lja', 'Lj5g0021484' => 'lja', 'Lj5g0024528' => 'lja', 'Lj6A399T12' => 'lonja', 'Lj6A656G65' => 'lonja', 'Lsat_1_v5_gn_3_125500' => 'lsa', 'Lsat_1_v5_gn_3_125540' => 'lsa', 'Lsat_1_v5_gn_5_72701' => 'lsa', 'Lsat_1_v5_gn_8_91560' => 'lsa', 'Lsat_1_v5_gn_9_9640' => 'lsa', 'Manes.01G200600' => 'mes', 'Manes.01G200700' => 'mes', 'Manes.03G168900' => 'mes', 'Manes.03G169000' => 'mes', 'Manes.05G085801' => 'mes', 'Manes.05G086200' => 'mes', 'Manes.15G036700' => 'mes', 'Manes.15G036900' => 'mes', 'Mapoly0004s0172' => 'mpo', 'Mapoly0023s0001' => 'mpo', 'Mapoly0142s0012' => 'mpo', 'MBI01_g32854_MAGBIO' => 'mbi', 'MBI11_g24427_MAGBIO' => 'mbi', 'MBI11_g47319_MAGBIO' => 'mbi', 'MCO01G433' => 'mco', 'MD00G1187800' => 'mdo', 'MD04G1226500' => 'mdo', 'MD05G1203900' => 'mdo', 'MD10G1191100' => 'mdo', 'MD12G1243500' => 'mdo', 'MD13G1207000' => 'mdo', 'MD13G1207100' => 'mdo', 'MD16G1208600' => 'mdo', 'Medtr1g050352' => 'mtr', 'Medtr1g070385' => 'mtr', 'Medtr1g070450' => 'mtr', 'Medtr1g075200' => 'mtr', 'Medtr1g075250' => 'mtr', 'Medtr1g075260' => 'mtr', 'Medtr1g475250' => 'mtr', 'Medtr4g075450' => 'mtr', 'Medtr7g096300' => 'mtr', 'Medtr8g105110' => 'mtr', 'MELO3C006470.2' => 'cme', 'MELO3C006471.2' => 'cme', 'MELO3C020772.2' => 'cme', 'MELO3C026780.2' => 'cme', 'MELO3C026781.2' => 'cme', 'Migut.D00390' => 'egut', 'Migut.G00435' => 'egut', 'Migut.G00436' => 'egut', 'Migut.G00718' => 'egut', 'MSTRG.21891' => 'ama', 'MSTRG.26910' => 'ama', 'MSTRG.4099' => 'ama', 'MSTRG.9925' => 'ama', 'Nitab4.5_0000165g0010' => 'nta', 'Nitab4.5_0000209g0180' => 'nta', 'Nitab4.5_0000244g0440' => 'nta', 'Nitab4.5_0000525g0220' => 'nta', 'Nitab4.5_0001597g0020' => 'nta', 'Nitab4.5_0001878g0040' => 'nta', 'Nitab4.5_0001878g0060' => 'nta', 'Nitab4.5_0002838g0100' => 'nta', 'Nitab4.5_0002838g0120' => 'nta', 'Nitab4.5_0004798g0030' => 'nta', 'Nitab4.5_0005420g0010' => 'nta', 'Nitab4.5_0005507g0010' => 'nta', 'Nitab4.5_0005574g0020' => 'nta', 'Nitab4.5_0005838g0010' => 'nta', 'Nitab4.5_0010580g0020' => 'nta', 'Nn1g02599' => 'nnu', 'Nn1g02608' => 'nnu', 'Nn3g17742' => 'nnu', 'Nn3g19534' => 'nnu', 'Nn3g19535' => 'nnu', 'Oeu008790.1' => 'oeu', 'Oeu008792.1' => 'oeu', 'Oeu032590.1' => 'oeu', 'Oeu035349.1' => 'oeu', 'Oeu049791.1' => 'oeu', 'Os01g0774500' => 'osa', 'Os03g0628800' => 'osa', 'Os03g0798600' => 'osa', 'Os05g0508800' => 'osa', 'Peaxi162Scf00036g02018' => 'pax', 'Peaxi162Scf00578g00032' => 'pax', 'Peaxi162Scf00578g00317' => 'pax', 'Peaxi162Scf00785g00114' => 'pax', 'Peaxi162Scf00813g00119' => 'pax', 'Peaxi162Scf00906g00227' => 'pax', 'PGR004G0875' => 'pgr', 'PGR004G2424' => 'pgr', 'PGR031G1239' => 'pgr', 'PGR031G2474' => 'pgr', 'PGR044G0423' => 'pgr', 'PGSC0003DMG400001128' => 'stu', 'PGSC0003DMG400007336' => 'stu', 'PGSC0003DMG400016318' => 'stu', 'PGSC0003DMG400016319' => 'stu', 'PGSC0003DMG400018074' => 'stu', 'Phvul.001G157700' => 'pvu', 'Phvul.002G148550' => 'pvu', 'Phvul.002G320200' => 'pvu', 'Phvul.003G089200' => 'pvu', 'Phvul.007G126000' => 'pvu', 'Phvul.007G126100' => 'pvu', 'Phvul.007G178000' => 'pvu', 'Phvul.007G178200' => 'pvu', 'Potri.002G043000' => 'ptr', 'Potri.002G043200' => 'ptr', 'Potri.003G123750' => 'ptr', 'Potri.005G055401' => 'ptr', 'Potri.005G219700' => 'ptr', 'Potri.005G220000' => 'ptr', 'Potri.008G161901' => 'ptr', 'Potri.008G162000' => 'ptr', 'Potri.008G162400' => 'ptr', 'Potri.010G076900' => 'ptr', 'Pp3c12_9180' => 'ppa', 'Pp3c13_19770' => 'ppa', 'Pp3c14_22950' => 'ppa', 'Pp3c16_12160' => 'ppa', 'Pp3c27_7820' => 'ppa', 'Pp3c2_3490' => 'ppa', 'Pp3c3_23700' => 'ppa', 'Pp3c3_36520' => 'ppa', 'Pp3c4_15250' => 'ppa', 'PRCOL_00007002' => 'pco', 'Prupe.1G030600' => 'ppe', 'Prupe.1G030700' => 'ppe', 'Prupe.6G345200' => 'ppe', 'Prupe.8G230300' => 'ppe', 'Prupe.8G230500' => 'ppe', 'Psat3g059600' => 'psa', 'Psat5g200920' => 'psa', 'Psat6g056440' => 'psa', 'Psat6g057360' => 'psa', 'Psat6g134120' => 'psa', 'Psat6g134160' => 'psa', 'Psat7g008640' => 'psa', 'Psat7g185240' => 'psa', 'PSO017G1330' => 'pso', 'PSO063G6097' => 'pso', 'PSO170G0835' => 'pso', 'PSO170G2499' => 'pso', 'PSO210G5058' => 'pso', 'PSO210G6154' => 'pso', 'PSO585G0031' => 'pso', 'PSO832G0264' => 'pso', 'PSO832G4288' => 'pso', 'QL03p027355' => 'qlo', 'QL03p027430' => 'qlo', 'QL04p081380' => 'qlo', 'QL06p015642' => 'qlo', 'QL06p015650' => 'qlo', 'QL06p015686' => 'qlo', 'QL12p042927' => 'qlo', 'QL93p1863_0035' => 'qlo', 'RcHm_v2.0_Chr3g0450581' => 'rch', 'RcHm_v2.0_Chr4g0390371' => 'rch', 'RcHm_v2.0_Chr4g0390381' => 'rch', 'RcHm_v2.0_Chr4g0390491' => 'rch', 'RcHm_v2.0_Chr4g0390501' => 'rch', 'RcHm_v2.0_Chr6g0289231' => 'rch', 'Rhsim04G0190400' => 'rsi', 'Rhsim04G0190500' => 'rsi', 'Rhsim04G0190600' => 'rsi', 'Rhsim13G0031400' => 'rsi', 'Rhsim13G0165600' => 'rsi', 'RhsimUnG0114600' => 'rsi', 'RhsimUnG0114700' => 'rsi', 'Sabra02G0034800' => 'sbr', 'Sabra02G0035100' => 'sbr', 'Sabra05G0168600' => 'sbr', 'Sabra05G0168800' => 'sbr', 'Sabra08G0123700' => 'sbr', 'Sabra10G0031900' => 'sbr', 'Sabra13G0039000' => 'sbr', 'SalBow2G0782' => 'sbo', 'SalBow2G1403' => 'sbo', 'SalBow4G0074' => 'sbo', 'SalBow4G2635' => 'sbo', 'SalBow5G3010' => 'sbo', 'Sc05g0000870' => 'sci', 'Sc05g0000890' => 'sci', 'Sc13g0005000' => 'sci', 'Sc13g0005030' => 'sci', 'Sc19g0003790' => 'sci', 'Sc19g0003800' => 'sci', 'Sed0003467' => 'sed', 'Sed0009355' => 'sed', 'Sed0009894' => 'sed', 'Sed0011972' => 'sed', 'Sed0021483' => 'sed', 'Sed0021750' => 'sed', 'Sed0026279' => 'sed', 'SEGI_05312' => 'sgi', 'SEGI_10112' => 'sgi', 'SEGI_15835' => 'sgi', 'SEGI_30386' => 'sgi', 'SEGI_34122' => 'sgi', 'SEGI_35063' => 'sgi', 'SGA_v2.0_scaffold101G29794' => 'sas', 'SGA_v2.0_scaffold1G00573' => 'sas', 'SGA_v2.0_scaffold79G25637' => 'sas', 'SGA_v2.0_scaffold88G27283' => 'sas', 'SGA_v2.0_scaffold88G27285' => 'sas', 'SGA_v2.0_scaffold88G27331' => 'sas', 'SHI09937' => 'shi', 'SMO119G0302' => 'smo', 'SMO137G0231' => 'smo', 'SMO367G1151' => 'smo', 'Solyc02g082000.3' => 'sly', 'Solyc06g031670.3' => 'sly', 'Solyc06g053810.3' => 'sly', 'Solyc07g025457.1' => 'sly', 'Solyc08g059740.1' => 'sly', 'Solyc08g059750.3' => 'sly', 'Solyc09g083370.3' => 'sly', 'Solyc12g038950.3' => 'sly', 'Sopen02g026630' => 'spe', 'Sopen06g018930' => 'spe', 'Sopen06g018940' => 'spe', 'Sopen08g009460' => 'spe', 'Sopen09g032290' => 'spe', 'Sp1g03080' => 'spa', 'Sp1g03090' => 'spa', 'Sp1g05480' => 'spa', 'Sp2g07860' => 'spa', 'Sp2g08430' => 'spa', 'Sp2g08440' => 'spa', 'Sp2g26200' => 'spa', 'Sp4g13170' => 'spa', 'Sp6g33840' => 'spa', 'SpUn1204_0010' => 'spa', 'TAR365G0908' => 'tar', 'TAR381G1270' => 'tar', 'TAR381G1651' => 'tar', 'TAR625G1131' => 'tar', 'TAR633G0962' => 'tar', 'TAR633G1729' => 'tar', 'TAR633G1864' => 'tar', 'TAR636G0221' => 'tar', 'TAR636G0314' => 'tar', 'TAR636G3202' => 'tar', 'THA.LOC104800805' => 'tha', 'THA.LOC104801096' => 'tha', 'THA.LOC104801555' => 'tha', 'THA.LOC104808491' => 'tha', 'THA.LOC104808595' => 'tha', 'THA.LOC104815985' => 'tha', 'THA.LOC104822250' => 'tha', 'THA.LOC104826071' => 'tha', 'Thecc.01G265200' => 'tca', 'Thecc.01G265300' => 'tca', 'Thecc.01G265700' => 'tca', 'Thecc.03G109100' => 'tca', 'Thecc.04G245900' => 'tca', 'Thecc.04G246000' => 'tca', 'Thhalv10003334m.g' => 'esa', 'Thhalv10005508m.g' => 'esa', 'Thhalv10005643m.g' => 'esa', 'Thhalv10007316m.g' => 'esa', 'Thhalv10009006m.g' => 'esa', 'Thhalv10009309m.g' => 'esa', 'Thhalv10014917m.g' => 'esa', 'Thhalv10014919m.g' => 'esa', 'Thhalv10015393m.g' => 'esa', 'Thhalv10016515m.g' => 'esa', 'Thhalv10029242m.g' => 'esa', 'TPR.G16654' => 'tpr', 'TPR.G20589' => 'tpr', 'TPR.G23029' => 'tpr', 'TPR.G27731' => 'tpr', 'TPR.G28889' => 'tpr', 'TPR.G28899' => 'tpr', 'TPR.G30846' => 'tpr', 'TPR.G5452' => 'tpr', 'TPR.G5713' => 'tpr', 'TPR.G9046' => 'tpr', 'TPR.G9061' => 'tpr', 'TWI09G1075' => 'twi', 'TWI12G0806' => 'twi', 'TWI18G0108' => 'twi', 'TWI53G1361' => 'twi', 'TWI73G0185' => 'twi', 'TWI73G0427' => 'twi', 'unitig_37.g12001' => 'ugi', 'unitig_747.g21660' => 'ugi', 'unitig_748.g7232' => 'ugi', 'unitig_748.g7315' => 'ugi', 'unitig_85.g27262' => 'ugi', 'unitig_92.g28220' => 'ugi', 'vmacro02632' => 'vma', 'vmacro08410' => 'vma', 'vmacro08411' => 'vma', 'vmacro15407' => 'vma', 'VMungo0251G3619' => 'vmu', 'VMungo0720G1204' => 'vmu', 'VMungo0720G1918' => 'vmu', 'VMungo0720G2387' => 'vmu', 'VMungo0720G2961' => 'vmu', 'VMungo1215G2154' => 'vmu', 'VMungo1383G2411' => 'vmu', 'Zm00001eb051130' => 'zma', 'Zm00001eb116830' => 'zma', 'Zm00001eb116850' => 'zma', 'Zm00001eb151740' => 'zma', 'Zm00001eb292360' => 'zma', 'Zm00001eb301640' => 'zma' ) $gf_id = 'HOM05D000856' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000856' ) $data_identifier = 'HOM05D000856' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 13, 'ath' => (int) 10, 'atr' => (int) 1, 'acertr' => (int) 8, 'cqu' => (int) 6, 'bca' => (int) 21, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 11, 'car' => (int) 9, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 8, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 5, 'fan' => (int) 16, 'fve' => (int) 6, 'gma' => (int) 11, 'ghi' => (int) 19, 'gra' => (int) 9, 'vvi' => (int) 7, 'han' => (int) 17, 'cav' => (int) 5, 'hma' => (int) 2, 'vpl' => (int) 2, 'sun' => (int) 7, 'lal' => (int) 9, 'lja' => (int) 5, 'lonja' => (int) 9, 'lsa' => (int) 5, 'mes' => (int) 8, 'mpo' => (int) 3, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 10, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 15, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 9, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 9, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 6, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 5, 'spa' => (int) 10, 'tar' => (int) 10, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 11, 'tpr' => (int) 11, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 4, 'vmu' => (int) 7, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb301640' $species_info = array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ) $local_species = 'spe' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000856', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p00010' => 'bna', 'A03p04160' => 'bna', 'A03p17160' => 'bna', 'A04p23370' => 'bna', 'A05p14860' => 'bna', 'A08p37020' => 'bna', 'A09p08050' => 'bna', 'A09p66800' => 'bna', 'A09p67940' => 'bna', 'A10p02680' => 'bna', 'A10p05320' => 'bna', 'Aa31LG1G20560' => 'aar', 'Aa31LG1G20610' => 'aar', 'Aa31LG1G7810' => 'aar', 'Aa31LG5G3590' => 'aar', 'Aa31LG5G6140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3819' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4683' => 'aag', 'Actinidia04480' => 'ach', 'Actinidia05466' => 'ach', 'Actinidia08445' => 'ach', 'Actinidia21170' => 'ach', 'Actinidia24812' => 'ach', 'Actinidia24951' => 'ach', 'Actinidia40088' => 'ach', 'Ah.02g111660' => 'amhyb', 'Ah.11g048900' => 'amhyb', 'Ah.11g049910' => 'amhyb', 'AL1G13870' => 'aly', 'AL1G13880' => 'aly', 'AL1G16760' => 'aly', 'AL390U10020' => 'aly', 'AL4G25520' => 'aly', 'AL6G19890' => 'aly', 'AL6G19900' => 'aly', 'AL6G19910' => 'aly', 'AL8G40100' => 'aly', 'Aqoxy2G03562' => 'aox', 'Aqoxy5G00316' => 'aox', 'Aqoxy5G00926' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1628KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1H403S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2FU6SJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.882I6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8YRY2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YN1SN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AF70II' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZA8L1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F916KL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHRD8H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KTZ8QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S22EMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8M29T' => 'arhy', 'AT1G04270' => 'ath', 'AT1G04280' => 'ath', 'AT1G06750' => 'ath', 'AT1G33850' => 'ath', 'AT2G30630' => 'ath', 'AT5G09490' => 'ath', 'AT5G09500' => 'ath', 'AT5G09510' => 'ath', 'AT5G43640' => 'ath', 'AT5G63070' => 'ath', 'ATR0605G315' => 'atr', 'Atru.chr11.175' => 'acertr', 'Atru.chr11.653' => 'acertr', 'Atru.chr3.1616' => 'acertr', 'Atru.chr4.2230' => 'acertr', 'Atru.chr4.2232' => 'acertr', 'Atru.chr5.1598' => 'acertr', 'Atru.chr5.1600' => 'acertr', 'Atru.chr5.2188' => 'acertr', 'AUR62008326' => 'cqu', 'AUR62011922' => 'cqu', 'AUR62011924' => 'cqu', 'AUR62021771' => 'cqu', 'AUR62032237' => 'cqu', 'AUR62032240' => 'cqu', 'BcaB01g05572' => 'bca', 'BcaB02g10337' => 'bca', 'BcaB04g19944' => 'bca', 'BcaB05g21548' => 'bca', 'BcaB05g21549' => 'bca', 'BcaB05g23227' => 'bca', 'BcaB06g26256' => 'bca', 'BcaB06g26257' => 'bca', 'BcaB06g28379' => 'bca', 'BcaC02g11159' => 'bca', 'BcaC03g13258' => 'bca', 'BcaC03g13259' => 'bca', 'BcaC05g24456' => 'bca', 'BcaC05g24457' => 'bca', 'BcaC07g36922' => 'bca', 'BcaC07g36923' => 'bca', 'BcaC07g42050' => 'bca', 'BcaC07g42176' => 'bca', 'BcaC07g42195' => 'bca', 'BcaC07g42196' => 'bca', 'BcaNung06674' => 'bca', 'BolC2t06351H' => 'bol', 'BolC2t06352H' => 'bol', 'BolC3t12993H' => 'bol', 'BolC4t23525H' => 'bol', 'BolC4t27475H' => 'bol', 'BolC5t29025H' => 'bol', 'BolC5t29026H' => 'bol', 'BolC8t46898H' => 'bol', 'BolC8t46899H' => 'bol', 'BolC8t52630H' => 'bol', 'BolC8t52765H' => 'bol', 'BolC9t53824H' => 'bol', 'BraA03t09760Z' => 'bra', 'BraA03t10990Z' => 'bra', 'BraA05t20413Z' => 'bra', 'BraA08t35602Z' => 'bra', 'BraA09t36458Z' => 'bra', 'BraA09t42018Z' => 'bra', 'BraA09t42129Z' => 'bra', 'BraA10t42536Z' => 'bra', 'BraA10t42537Z' => 'bra', 'C01p10690' => 'bna', 'C02p03890' => 'bna', 'C02p03900' => 'bna', 'C03p04620' => 'bna', 'C04p19870' => 'bna', 'C04p59670' => 'bna', 'C05p02460' => 'bna', 'C05p02470' => 'bna', 'C08p00980' => 'bna', 'C08p00990' => 'bna', 'C08p51030' => 'bna', 'C08p52360' => 'bna', 'C09p09120' => 'bna', 'CAN.G19.15' => 'can', 'CAN.G251.10' => 'can', 'CAN.G251.9' => 'can', 'CAN.G398.24' => 'can', 'CAN.G410.32' => 'can', 'CAN.G881.2' => 'can', 'CANSAT01G3025' => 'cansat', 'CANSAT78G1211' => 'cansat', 'CANSAT78G1218' => 'cansat', 'CANSAT78G1521' => 'cansat', 'CANSAT78G1670' => 'cansat', 'CARHR003600' => 'chi', 'CARHR003610' => 'chi', 'CARHR006290' => 'chi', 'CARHR006430' => 'chi', 'CARHR124110' => 'chi', 'CARHR203870' => 'chi', 'CARHR203880' => 'chi', 'CARHR203890' => 'chi', 'CARHR276880' => 'chi', 'Carub.0001s0346' => 'cru', 'Carub.0001s0347' => 'cru', 'Carub.0001s0607' => 'cru', 'Carub.0003s2768' => 'cru', 'Carub.0003s2769' => 'cru', 'Carub.0004s1178' => 'cru', 'Carub.0006s0806' => 'cru', 'Carub.0006s0807' => 'cru', 'Carub.0006s0808' => 'cru', 'Carub.0008s0501' => 'cru', 'Carub.0008s2379' => 'cru', 'Ca_08655_v3' => 'car', 'Ca_08922_v3' => 'car', 'Ca_08923_v3' => 'car', 'Ca_09119_v3' => 'car', 'Ca_09703_v3' => 'car', 'Ca_09705_v3' => 'car', 'Ca_09835_v3' => 'car', 'Ca_26403_v3' => 'car', 'Ca_30719_v3' => 'car', 'CBR_g17958' => 'cbr', 'CBR_g40516' => 'cbr', 'Cc00_g05350' => 'ccan', 'Cc01_g18690' => 'ccan', 'Cc03_g04830' => 'ccan', 'Cc03_g04850' => 'ccan', 'CDE02G4469' => 'cde', 'CDE06G0883' => 'cde', 'CDE06G1295' => 'cde', 'CDE06G1390' => 'cde', 'CDE07G0584' => 'cde', 'CDE07G1084' => 'cde', 'CDE08G1259' => 'cde', 'Cfa002341' => 'cfa', 'Cfa024337' => 'cfa', 'Ciclev10004749m.g' => 'ccl', 'Ciclev10006127m.g' => 'ccl', 'Ciclev10019720m.g' => 'ccl', 'Ciclev10022652m.g' => 'ccl', 'CiPaw.01G190400' => 'cil', 'CiPaw.01G190500' => 'cil', 'CiPaw.02G116400' => 'cil', 'CiPaw.02G116500' => 'cil', 'CiPaw.04G183000' => 'cil', 'CiPaw.04G183300' => 'cil', 'ClCG05G004610' => 'cla', 'ClCG05G004620' => 'cla', 'ClCG06G006730' => 'cla', 'ClCG06G006740' => 'cla', 'ClCG11G003690' => 'cla', 'COL.COLO4_08276' => 'col', 'COL.COLO4_08277' => 'col', 'COL.COLO4_15787' => 'col', 'COL.COLO4_15789' => 'col', 'Cpa.g.c44815' => 'cpa', 'Cpa.g.sc52.144' => 'cpa', 'Cpa.g.sc58.46' => 'cpa', 'Cpa.g.sc58.47' => 'cpa', 'Cre08.g360900' => 'cre', 'CsaV3_2G013030' => 'csa', 'CsaV3_2G013050' => 'csa', 'CsaV3_2G015620' => 'csa', 'CsaV3_3G012590' => 'csa', 'CsaV3_3G012600' => 'csa', 'CSS0001641' => 'camsi', 'CSS0008310' => 'camsi', 'CSS0013011' => 'camsi', 'CSS0017147' => 'camsi', 'CSS0022970' => 'camsi', 'CSS0025655' => 'camsi', 'CSS0028665' => 'camsi', 'CSS0029117' => 'camsi', 'CSS0032024' => 'camsi', 'CSS0039681' => 'camsi', 'CSS0046516' => 'camsi', 'CSS0050307' => 'camsi', 'DCAR_005871' => 'dca', 'DCAR_007342' => 'dca', 'DCAR_024228' => 'dca', 'DCAR_027277' => 'dca', 'DCAR_030718' => 'dca', 'Dinv20287' => 'din', 'Dinv22461' => 'din', 'Dinv22464' => 'din', 'Dinv29912' => 'din', 'Dinv29913' => 'din', 'Dinv34580' => 'din', 'Dinv34582' => 'din', 'Dinv44632' => 'din', 'Duzib052G0266' => 'dzi', 'Duzib133G0907' => 'dzi', 'Duzib133G1034' => 'dzi', 'Duzib138G0207' => 'dzi', 'Duzib138G0491' => 'dzi', 'Duzib151G0812' => 'dzi', 'Duzib151G1166' => 'dzi', 'Duzib168G0192' => 'dzi', 'Duzib211G0077' => 'dzi', 'Duzib212G0429' => 'dzi', 'Duzib212G0472' => 'dzi', 'ECA233G2617' => 'eca', 'ECA236G4188' => 'eca', 'ECA240G0936' => 'eca', 'ECA240G1129' => 'eca', 'ECA247G0623' => 'eca', 'EL10Ac5g10451' => 'bvu', 'EL10Ac5g10453' => 'bvu', 'EL10Ac5g10894' => 'bvu', 'Eucgr.H00192' => 'egr', 'Eucgr.H00193' => 'egr', 'Eucgr.H00194' => 'egr', 'Eucgr.J01562' => 'egr', 'Eucgr.K03301' => 'egr', 'FAN02G0632' => 'fan', 'FAN05G5378' => 'fan', 'FAN09G3247' => 'fan', 'FAN12G0435' => 'fan', 'FAN12G2426' => 'fan', 'FAN14G1707' => 'fan', 'FAN14G4725' => 'fan', 'FAN15G2071' => 'fan', 'FAN17G3065' => 'fan', 'FAN19G1376' => 'fan', 'FAN20G0354' => 'fan', 'FAN20G2429' => 'fan', 'FAN20G2658' => 'fan', 'FAN24G2343' => 'fan', 'FAN27G2362' => 'fan', 'FAN28G1765' => 'fan', 'FvH4_1g16020' => 'fve', 'FvH4_2g04890' => 'fve', 'FvH4_2g22270' => 'fve', 'FvH4_4g02630' => 'fve', 'FvH4_4g02640' => 'fve', 'FvH4_6g02650' => 'fve', 'Glyma.02G140600' => 'gma', 'Glyma.03G159900' => 'gma', 'Glyma.05G234800' => 'gma', 'Glyma.07G269600' => 'gma', 'Glyma.08G042300' => 'gma', 'Glyma.10G033500' => 'gma', 'Glyma.10G185200' => 'gma', 'Glyma.17G004300' => 'gma', 'Glyma.19G161900' => 'gma', 'Glyma.20G205100' => 'gma', 'Glyma.20G205200' => 'gma', 'Gohir.A01G139101' => 'ghi', 'Gohir.A02G035600' => 'ghi', 'Gohir.A02G117901' => 'ghi', 'Gohir.A07G210100' => 'ghi', 'Gohir.A07G210200' => 'ghi', 'Gohir.A08G061100' => 'ghi', 'Gohir.A09G223000' => 'ghi', 'Gohir.A09G223100' => 'ghi', 'Gohir.A10G113900' => 'ghi', 'Gohir.A10G114000' => 'ghi', 'Gohir.D02G042300' => 'ghi', 'Gohir.D07G216100' => 'ghi', 'Gohir.D07G216200' => 'ghi', 'Gohir.D08G070400' => 'ghi', 'Gohir.D09G225000' => 'ghi', 'Gohir.D09G225100' => 'ghi', 'Gohir.D10G152300' => 'ghi', 'Gohir.D10G153200' => 'ghi', 'Gohir.D11G133701' => 'ghi', 'Gorai.004G074100' => 'gra', 'Gorai.005G046800' => 'gra', 'Gorai.006G246500' => 'gra', 'Gorai.006G246600' => 'gra', 'Gorai.007G142900' => 'gra', 'Gorai.011G171000' => 'gra', 'Gorai.011G171100' => 'gra', 'Gorai.013G104300' => 'gra', 'Gorai.013G104400' => 'gra', 'GSVIVG01000754001' => 'vvi', 'GSVIVG01000756001' => 'vvi', 'GSVIVG01010903001' => 'vvi', 'GSVIVG01017623001' => 'vvi', 'GSVIVG01018113001' => 'vvi', 'GSVIVG01018116001' => 'vvi', 'GSVIVG01018118001' => 'vvi', 'HanXRQChr03g0076211' => 'han', 'HanXRQChr03g0092431' => 'han', 'HanXRQChr03g0092441' => 'han', 'HanXRQChr03g0092591' => 'han', 'HanXRQChr03g0092671' => 'han', 'HanXRQChr03g0092681' => 'han', 'HanXRQChr03g0092691' => 'han', 'HanXRQChr03g0092701' => 'han', 'HanXRQChr03g0092721' => 'han', 'HanXRQChr03g0092731' => 'han', 'HanXRQChr04g0113681' => 'han', 'HanXRQChr10g0281371' => 'han', 'HanXRQChr11g0337141' => 'han', 'HanXRQChr13g0424521' => 'han', 'HanXRQChr13g0424531' => 'han', 'HanXRQChr13g0424541' => 'han', 'HanXRQChr16g0498221' => 'han', 'Haze_04377' => 'cav', 'Haze_11298' => 'cav', 'Haze_24547' => 'cav', 'Haze_24550' => 'cav', 'Haze_26587' => 'cav', 'Hma1.2p1_0650F.1_g195410' => 'hma', 'Hma1.2p1_0893F.1_g233470' => 'hma', 'HPP92_006508' => 'vpl', 'HPP92_024780' => 'vpl', 'Hund02688' => 'sun', 'Hund09380' => 'sun', 'Hund09381' => 'sun', 'Hund09832' => 'sun', 'Hund09833' => 'sun', 'Hund11351' => 'sun', 'Hund11513' => 'sun', 'Lalb_Chr06g0162591' => 'lal', 'Lalb_Chr06g0162601' => 'lal', 'Lalb_Chr06g0169321' => 'lal', 'Lalb_Chr09g0330951' => 'lal', 'Lalb_Chr16g0387631' => 'lal', 'Lalb_Chr21g0306241' => 'lal', 'Lalb_Chr25g0290051' => 'lal', 'Lalb_Chr25g0290061' => 'lal', 'Lalb_Chr25g0290071' => 'lal', 'Lj1g0003876' => 'lja', 'Lj1P1207T36' => 'lonja', 'Lj2C1156G12' => 'lonja', 'Lj3A793G39' => 'lonja', 'Lj3C580G2' => 'lonja', 'Lj3C780G2' => 'lonja', 'Lj3C780T4' => 'lonja', 'Lj3C793G9' => 'lonja', 'Lj4g0012960' => 'lja', 'Lj5g0021252' => 'lja', 'Lj5g0021484' => 'lja', 'Lj5g0024528' => 'lja', 'Lj6A399T12' => 'lonja', 'Lj6A656G65' => 'lonja', 'Lsat_1_v5_gn_3_125500' => 'lsa', 'Lsat_1_v5_gn_3_125540' => 'lsa', 'Lsat_1_v5_gn_5_72701' => 'lsa', 'Lsat_1_v5_gn_8_91560' => 'lsa', 'Lsat_1_v5_gn_9_9640' => 'lsa', 'Manes.01G200600' => 'mes', 'Manes.01G200700' => 'mes', 'Manes.03G168900' => 'mes', 'Manes.03G169000' => 'mes', 'Manes.05G085801' => 'mes', 'Manes.05G086200' => 'mes', 'Manes.15G036700' => 'mes', 'Manes.15G036900' => 'mes', 'Mapoly0004s0172' => 'mpo', 'Mapoly0023s0001' => 'mpo', 'Mapoly0142s0012' => 'mpo', 'MBI01_g32854_MAGBIO' => 'mbi', 'MBI11_g24427_MAGBIO' => 'mbi', 'MBI11_g47319_MAGBIO' => 'mbi', 'MCO01G433' => 'mco', 'MD00G1187800' => 'mdo', 'MD04G1226500' => 'mdo', 'MD05G1203900' => 'mdo', 'MD10G1191100' => 'mdo', 'MD12G1243500' => 'mdo', 'MD13G1207000' => 'mdo', 'MD13G1207100' => 'mdo', 'MD16G1208600' => 'mdo', 'Medtr1g050352' => 'mtr', 'Medtr1g070385' => 'mtr', 'Medtr1g070450' => 'mtr', 'Medtr1g075200' => 'mtr', 'Medtr1g075250' => 'mtr', 'Medtr1g075260' => 'mtr', 'Medtr1g475250' => 'mtr', 'Medtr4g075450' => 'mtr', 'Medtr7g096300' => 'mtr', 'Medtr8g105110' => 'mtr', 'MELO3C006470.2' => 'cme', 'MELO3C006471.2' => 'cme', 'MELO3C020772.2' => 'cme', 'MELO3C026780.2' => 'cme', 'MELO3C026781.2' => 'cme', 'Migut.D00390' => 'egut', 'Migut.G00435' => 'egut', 'Migut.G00436' => 'egut', 'Migut.G00718' => 'egut', 'MSTRG.21891' => 'ama', 'MSTRG.26910' => 'ama', 'MSTRG.4099' => 'ama', 'MSTRG.9925' => 'ama', 'Nitab4.5_0000165g0010' => 'nta', 'Nitab4.5_0000209g0180' => 'nta', 'Nitab4.5_0000244g0440' => 'nta', 'Nitab4.5_0000525g0220' => 'nta', 'Nitab4.5_0001597g0020' => 'nta', 'Nitab4.5_0001878g0040' => 'nta', 'Nitab4.5_0001878g0060' => 'nta', 'Nitab4.5_0002838g0100' => 'nta', 'Nitab4.5_0002838g0120' => 'nta', 'Nitab4.5_0004798g0030' => 'nta', 'Nitab4.5_0005420g0010' => 'nta', 'Nitab4.5_0005507g0010' => 'nta', 'Nitab4.5_0005574g0020' => 'nta', 'Nitab4.5_0005838g0010' => 'nta', 'Nitab4.5_0010580g0020' => 'nta', 'Nn1g02599' => 'nnu', 'Nn1g02608' => 'nnu', 'Nn3g17742' => 'nnu', 'Nn3g19534' => 'nnu', 'Nn3g19535' => 'nnu', 'Oeu008790.1' => 'oeu', 'Oeu008792.1' => 'oeu', 'Oeu032590.1' => 'oeu', 'Oeu035349.1' => 'oeu', 'Oeu049791.1' => 'oeu', 'Os01g0774500' => 'osa', 'Os03g0628800' => 'osa', 'Os03g0798600' => 'osa', 'Os05g0508800' => 'osa', 'Peaxi162Scf00036g02018' => 'pax', 'Peaxi162Scf00578g00032' => 'pax', 'Peaxi162Scf00578g00317' => 'pax', 'Peaxi162Scf00785g00114' => 'pax', 'Peaxi162Scf00813g00119' => 'pax', 'Peaxi162Scf00906g00227' => 'pax', 'PGR004G0875' => 'pgr', 'PGR004G2424' => 'pgr', 'PGR031G1239' => 'pgr', 'PGR031G2474' => 'pgr', 'PGR044G0423' => 'pgr', 'PGSC0003DMG400001128' => 'stu', 'PGSC0003DMG400007336' => 'stu', 'PGSC0003DMG400016318' => 'stu', 'PGSC0003DMG400016319' => 'stu', 'PGSC0003DMG400018074' => 'stu', 'Phvul.001G157700' => 'pvu', 'Phvul.002G148550' => 'pvu', 'Phvul.002G320200' => 'pvu', 'Phvul.003G089200' => 'pvu', 'Phvul.007G126000' => 'pvu', 'Phvul.007G126100' => 'pvu', 'Phvul.007G178000' => 'pvu', 'Phvul.007G178200' => 'pvu', 'Potri.002G043000' => 'ptr', 'Potri.002G043200' => 'ptr', 'Potri.003G123750' => 'ptr', 'Potri.005G055401' => 'ptr', 'Potri.005G219700' => 'ptr', 'Potri.005G220000' => 'ptr', 'Potri.008G161901' => 'ptr', 'Potri.008G162000' => 'ptr', 'Potri.008G162400' => 'ptr', 'Potri.010G076900' => 'ptr', 'Pp3c12_9180' => 'ppa', 'Pp3c13_19770' => 'ppa', 'Pp3c14_22950' => 'ppa', 'Pp3c16_12160' => 'ppa', 'Pp3c27_7820' => 'ppa', 'Pp3c2_3490' => 'ppa', 'Pp3c3_23700' => 'ppa', 'Pp3c3_36520' => 'ppa', 'Pp3c4_15250' => 'ppa', 'PRCOL_00007002' => 'pco', 'Prupe.1G030600' => 'ppe', 'Prupe.1G030700' => 'ppe', 'Prupe.6G345200' => 'ppe', 'Prupe.8G230300' => 'ppe', 'Prupe.8G230500' => 'ppe', 'Psat3g059600' => 'psa', 'Psat5g200920' => 'psa', 'Psat6g056440' => 'psa', 'Psat6g057360' => 'psa', 'Psat6g134120' => 'psa', 'Psat6g134160' => 'psa', 'Psat7g008640' => 'psa', 'Psat7g185240' => 'psa', 'PSO017G1330' => 'pso', 'PSO063G6097' => 'pso', 'PSO170G0835' => 'pso', 'PSO170G2499' => 'pso', 'PSO210G5058' => 'pso', 'PSO210G6154' => 'pso', 'PSO585G0031' => 'pso', 'PSO832G0264' => 'pso', 'PSO832G4288' => 'pso', 'QL03p027355' => 'qlo', 'QL03p027430' => 'qlo', 'QL04p081380' => 'qlo', 'QL06p015642' => 'qlo', 'QL06p015650' => 'qlo', 'QL06p015686' => 'qlo', 'QL12p042927' => 'qlo', 'QL93p1863_0035' => 'qlo', 'RcHm_v2.0_Chr3g0450581' => 'rch', 'RcHm_v2.0_Chr4g0390371' => 'rch', 'RcHm_v2.0_Chr4g0390381' => 'rch', 'RcHm_v2.0_Chr4g0390491' => 'rch', 'RcHm_v2.0_Chr4g0390501' => 'rch', 'RcHm_v2.0_Chr6g0289231' => 'rch', 'Rhsim04G0190400' => 'rsi', 'Rhsim04G0190500' => 'rsi', 'Rhsim04G0190600' => 'rsi', 'Rhsim13G0031400' => 'rsi', 'Rhsim13G0165600' => 'rsi', 'RhsimUnG0114600' => 'rsi', 'RhsimUnG0114700' => 'rsi', 'Sabra02G0034800' => 'sbr', 'Sabra02G0035100' => 'sbr', 'Sabra05G0168600' => 'sbr', 'Sabra05G0168800' => 'sbr', 'Sabra08G0123700' => 'sbr', 'Sabra10G0031900' => 'sbr', 'Sabra13G0039000' => 'sbr', 'SalBow2G0782' => 'sbo', 'SalBow2G1403' => 'sbo', 'SalBow4G0074' => 'sbo', 'SalBow4G2635' => 'sbo', 'SalBow5G3010' => 'sbo', 'Sc05g0000870' => 'sci', 'Sc05g0000890' => 'sci', 'Sc13g0005000' => 'sci', 'Sc13g0005030' => 'sci', 'Sc19g0003790' => 'sci', 'Sc19g0003800' => 'sci', 'Sed0003467' => 'sed', 'Sed0009355' => 'sed', 'Sed0009894' => 'sed', 'Sed0011972' => 'sed', 'Sed0021483' => 'sed', 'Sed0021750' => 'sed', 'Sed0026279' => 'sed', 'SEGI_05312' => 'sgi', 'SEGI_10112' => 'sgi', 'SEGI_15835' => 'sgi', 'SEGI_30386' => 'sgi', 'SEGI_34122' => 'sgi', 'SEGI_35063' => 'sgi', 'SGA_v2.0_scaffold101G29794' => 'sas', 'SGA_v2.0_scaffold1G00573' => 'sas', 'SGA_v2.0_scaffold79G25637' => 'sas', 'SGA_v2.0_scaffold88G27283' => 'sas', 'SGA_v2.0_scaffold88G27285' => 'sas', 'SGA_v2.0_scaffold88G27331' => 'sas', 'SHI09937' => 'shi', 'SMO119G0302' => 'smo', 'SMO137G0231' => 'smo', 'SMO367G1151' => 'smo', 'Solyc02g082000.3' => 'sly', 'Solyc06g031670.3' => 'sly', 'Solyc06g053810.3' => 'sly', 'Solyc07g025457.1' => 'sly', 'Solyc08g059740.1' => 'sly', 'Solyc08g059750.3' => 'sly', 'Solyc09g083370.3' => 'sly', 'Solyc12g038950.3' => 'sly', 'Sopen02g026630' => 'spe', 'Sopen06g018930' => 'spe', 'Sopen06g018940' => 'spe', 'Sopen08g009460' => 'spe', 'Sopen09g032290' => 'spe', 'Sp1g03080' => 'spa', 'Sp1g03090' => 'spa', 'Sp1g05480' => 'spa', 'Sp2g07860' => 'spa', 'Sp2g08430' => 'spa', 'Sp2g08440' => 'spa', 'Sp2g26200' => 'spa', 'Sp4g13170' => 'spa', 'Sp6g33840' => 'spa', 'SpUn1204_0010' => 'spa', 'TAR365G0908' => 'tar', 'TAR381G1270' => 'tar', 'TAR381G1651' => 'tar', 'TAR625G1131' => 'tar', 'TAR633G0962' => 'tar', 'TAR633G1729' => 'tar', 'TAR633G1864' => 'tar', 'TAR636G0221' => 'tar', 'TAR636G0314' => 'tar', 'TAR636G3202' => 'tar', 'THA.LOC104800805' => 'tha', 'THA.LOC104801096' => 'tha', 'THA.LOC104801555' => 'tha', 'THA.LOC104808491' => 'tha', 'THA.LOC104808595' => 'tha', 'THA.LOC104815985' => 'tha', 'THA.LOC104822250' => 'tha', 'THA.LOC104826071' => 'tha', 'Thecc.01G265200' => 'tca', 'Thecc.01G265300' => 'tca', 'Thecc.01G265700' => 'tca', 'Thecc.03G109100' => 'tca', 'Thecc.04G245900' => 'tca', 'Thecc.04G246000' => 'tca', 'Thhalv10003334m.g' => 'esa', 'Thhalv10005508m.g' => 'esa', 'Thhalv10005643m.g' => 'esa', 'Thhalv10007316m.g' => 'esa', 'Thhalv10009006m.g' => 'esa', 'Thhalv10009309m.g' => 'esa', 'Thhalv10014917m.g' => 'esa', 'Thhalv10014919m.g' => 'esa', 'Thhalv10015393m.g' => 'esa', 'Thhalv10016515m.g' => 'esa', 'Thhalv10029242m.g' => 'esa', 'TPR.G16654' => 'tpr', 'TPR.G20589' => 'tpr', 'TPR.G23029' => 'tpr', 'TPR.G27731' => 'tpr', 'TPR.G28889' => 'tpr', 'TPR.G28899' => 'tpr', 'TPR.G30846' => 'tpr', 'TPR.G5452' => 'tpr', 'TPR.G5713' => 'tpr', 'TPR.G9046' => 'tpr', 'TPR.G9061' => 'tpr', 'TWI09G1075' => 'twi', 'TWI12G0806' => 'twi', 'TWI18G0108' => 'twi', 'TWI53G1361' => 'twi', 'TWI73G0185' => 'twi', 'TWI73G0427' => 'twi', 'unitig_37.g12001' => 'ugi', 'unitig_747.g21660' => 'ugi', 'unitig_748.g7232' => 'ugi', 'unitig_748.g7315' => 'ugi', 'unitig_85.g27262' => 'ugi', 'unitig_92.g28220' => 'ugi', 'vmacro02632' => 'vma', 'vmacro08410' => 'vma', 'vmacro08411' => 'vma', 'vmacro15407' => 'vma', 'VMungo0251G3619' => 'vmu', 'VMungo0720G1204' => 'vmu', 'VMungo0720G1918' => 'vmu', 'VMungo0720G2387' => 'vmu', 'VMungo0720G2961' => 'vmu', 'VMungo1215G2154' => 'vmu', 'VMungo1383G2411' => 'vmu', 'Zm00001eb051130' => 'zma', 'Zm00001eb116830' => 'zma', 'Zm00001eb116850' => 'zma', 'Zm00001eb151740' => 'zma', 'Zm00001eb292360' => 'zma', 'Zm00001eb301640' => 'zma' ), 'gf_id' => 'HOM05D000856', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000856' ), 'data_identifier' => 'HOM05D000856', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000856', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p00010' => 'bna', 'A03p04160' => 'bna', 'A03p17160' => 'bna', 'A04p23370' => 'bna', 'A05p14860' => 'bna', 'A08p37020' => 'bna', 'A09p08050' => 'bna', 'A09p66800' => 'bna', 'A09p67940' => 'bna', 'A10p02680' => 'bna', 'A10p05320' => 'bna', 'Aa31LG1G20560' => 'aar', 'Aa31LG1G20610' => 'aar', 'Aa31LG1G7810' => 'aar', 'Aa31LG5G3590' => 'aar', 'Aa31LG5G6140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3819' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4683' => 'aag', 'Actinidia04480' => 'ach', 'Actinidia05466' => 'ach', 'Actinidia08445' => 'ach', 'Actinidia21170' => 'ach', 'Actinidia24812' => 'ach', 'Actinidia24951' => 'ach', 'Actinidia40088' => 'ach', 'Ah.02g111660' => 'amhyb', 'Ah.11g048900' => 'amhyb', 'Ah.11g049910' => 'amhyb', 'AL1G13870' => 'aly', 'AL1G13880' => 'aly', 'AL1G16760' => 'aly', 'AL390U10020' => 'aly', 'AL4G25520' => 'aly', 'AL6G19890' => 'aly', 'AL6G19900' => 'aly', 'AL6G19910' => 'aly', 'AL8G40100' => 'aly', 'Aqoxy2G03562' => 'aox', 'Aqoxy5G00316' => 'aox', 'Aqoxy5G00926' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1628KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1H403S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2FU6SJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.882I6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8YRY2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YN1SN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AF70II' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZA8L1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F916KL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHRD8H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KTZ8QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S22EMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8M29T' => 'arhy', 'AT1G04270' => 'ath', 'AT1G04280' => 'ath', 'AT1G06750' => 'ath', 'AT1G33850' => 'ath', 'AT2G30630' => 'ath', 'AT5G09490' => 'ath', 'AT5G09500' => 'ath', 'AT5G09510' => 'ath', 'AT5G43640' => 'ath', 'AT5G63070' => 'ath', 'ATR0605G315' => 'atr', 'Atru.chr11.175' => 'acertr', 'Atru.chr11.653' => 'acertr', 'Atru.chr3.1616' => 'acertr', 'Atru.chr4.2230' => 'acertr', 'Atru.chr4.2232' => 'acertr', 'Atru.chr5.1598' => 'acertr', 'Atru.chr5.1600' => 'acertr', 'Atru.chr5.2188' => 'acertr', 'AUR62008326' => 'cqu', 'AUR62011922' => 'cqu', 'AUR62011924' => 'cqu', 'AUR62021771' => 'cqu', 'AUR62032237' => 'cqu', 'AUR62032240' => 'cqu', 'BcaB01g05572' => 'bca', 'BcaB02g10337' => 'bca', 'BcaB04g19944' => 'bca', 'BcaB05g21548' => 'bca', 'BcaB05g21549' => 'bca', 'BcaB05g23227' => 'bca', 'BcaB06g26256' => 'bca', 'BcaB06g26257' => 'bca', 'BcaB06g28379' => 'bca', 'BcaC02g11159' => 'bca', 'BcaC03g13258' => 'bca', 'BcaC03g13259' => 'bca', 'BcaC05g24456' => 'bca', 'BcaC05g24457' => 'bca', 'BcaC07g36922' => 'bca', 'BcaC07g36923' => 'bca', 'BcaC07g42050' => 'bca', 'BcaC07g42176' => 'bca', 'BcaC07g42195' => 'bca', 'BcaC07g42196' => 'bca', 'BcaNung06674' => 'bca', 'BolC2t06351H' => 'bol', 'BolC2t06352H' => 'bol', 'BolC3t12993H' => 'bol', 'BolC4t23525H' => 'bol', 'BolC4t27475H' => 'bol', 'BolC5t29025H' => 'bol', 'BolC5t29026H' => 'bol', 'BolC8t46898H' => 'bol', 'BolC8t46899H' => 'bol', 'BolC8t52630H' => 'bol', 'BolC8t52765H' => 'bol', 'BolC9t53824H' => 'bol', 'BraA03t09760Z' => 'bra', 'BraA03t10990Z' => 'bra', 'BraA05t20413Z' => 'bra', 'BraA08t35602Z' => 'bra', 'BraA09t36458Z' => 'bra', 'BraA09t42018Z' => 'bra', 'BraA09t42129Z' => 'bra', 'BraA10t42536Z' => 'bra', 'BraA10t42537Z' => 'bra', 'C01p10690' => 'bna', 'C02p03890' => 'bna', 'C02p03900' => 'bna', 'C03p04620' => 'bna', 'C04p19870' => 'bna', 'C04p59670' => 'bna', 'C05p02460' => 'bna', 'C05p02470' => 'bna', 'C08p00980' => 'bna', 'C08p00990' => 'bna', 'C08p51030' => 'bna', 'C08p52360' => 'bna', 'C09p09120' => 'bna', 'CAN.G19.15' => 'can', 'CAN.G251.10' => 'can', 'CAN.G251.9' => 'can', 'CAN.G398.24' => 'can', 'CAN.G410.32' => 'can', 'CAN.G881.2' => 'can', 'CANSAT01G3025' => 'cansat', 'CANSAT78G1211' => 'cansat', 'CANSAT78G1218' => 'cansat', 'CANSAT78G1521' => 'cansat', 'CANSAT78G1670' => 'cansat', 'CARHR003600' => 'chi', 'CARHR003610' => 'chi', 'CARHR006290' => 'chi', 'CARHR006430' => 'chi', 'CARHR124110' => 'chi', 'CARHR203870' => 'chi', 'CARHR203880' => 'chi', 'CARHR203890' => 'chi', 'CARHR276880' => 'chi', 'Carub.0001s0346' => 'cru', 'Carub.0001s0347' => 'cru', 'Carub.0001s0607' => 'cru', 'Carub.0003s2768' => 'cru', 'Carub.0003s2769' => 'cru', 'Carub.0004s1178' => 'cru', 'Carub.0006s0806' => 'cru', 'Carub.0006s0807' => 'cru', 'Carub.0006s0808' => 'cru', 'Carub.0008s0501' => 'cru', 'Carub.0008s2379' => 'cru', 'Ca_08655_v3' => 'car', 'Ca_08922_v3' => 'car', 'Ca_08923_v3' => 'car', 'Ca_09119_v3' => 'car', 'Ca_09703_v3' => 'car', 'Ca_09705_v3' => 'car', 'Ca_09835_v3' => 'car', 'Ca_26403_v3' => 'car', 'Ca_30719_v3' => 'car', 'CBR_g17958' => 'cbr', 'CBR_g40516' => 'cbr', 'Cc00_g05350' => 'ccan', 'Cc01_g18690' => 'ccan', 'Cc03_g04830' => 'ccan', 'Cc03_g04850' => 'ccan', 'CDE02G4469' => 'cde', 'CDE06G0883' => 'cde', 'CDE06G1295' => 'cde', 'CDE06G1390' => 'cde', 'CDE07G0584' => 'cde', 'CDE07G1084' => 'cde', 'CDE08G1259' => 'cde', 'Cfa002341' => 'cfa', 'Cfa024337' => 'cfa', 'Ciclev10004749m.g' => 'ccl', 'Ciclev10006127m.g' => 'ccl', 'Ciclev10019720m.g' => 'ccl', 'Ciclev10022652m.g' => 'ccl', 'CiPaw.01G190400' => 'cil', 'CiPaw.01G190500' => 'cil', 'CiPaw.02G116400' => 'cil', 'CiPaw.02G116500' => 'cil', 'CiPaw.04G183000' => 'cil', 'CiPaw.04G183300' => 'cil', 'ClCG05G004610' => 'cla', 'ClCG05G004620' => 'cla', 'ClCG06G006730' => 'cla', 'ClCG06G006740' => 'cla', 'ClCG11G003690' => 'cla', 'COL.COLO4_08276' => 'col', 'COL.COLO4_08277' => 'col', 'COL.COLO4_15787' => 'col', 'COL.COLO4_15789' => 'col', 'Cpa.g.c44815' => 'cpa', 'Cpa.g.sc52.144' => 'cpa', 'Cpa.g.sc58.46' => 'cpa', 'Cpa.g.sc58.47' => 'cpa', 'Cre08.g360900' => 'cre', 'CsaV3_2G013030' => 'csa', 'CsaV3_2G013050' => 'csa', 'CsaV3_2G015620' => 'csa', 'CsaV3_3G012590' => 'csa', 'CsaV3_3G012600' => 'csa', 'CSS0001641' => 'camsi', 'CSS0008310' => 'camsi', 'CSS0013011' => 'camsi', 'CSS0017147' => 'camsi', 'CSS0022970' => 'camsi', 'CSS0025655' => 'camsi', 'CSS0028665' => 'camsi', 'CSS0029117' => 'camsi', 'CSS0032024' => 'camsi', 'CSS0039681' => 'camsi', 'CSS0046516' => 'camsi', 'CSS0050307' => 'camsi', 'DCAR_005871' => 'dca', 'DCAR_007342' => 'dca', 'DCAR_024228' => 'dca', 'DCAR_027277' => 'dca', 'DCAR_030718' => 'dca', 'Dinv20287' => 'din', 'Dinv22461' => 'din', 'Dinv22464' => 'din', 'Dinv29912' => 'din', 'Dinv29913' => 'din', 'Dinv34580' => 'din', 'Dinv34582' => 'din', 'Dinv44632' => 'din', 'Duzib052G0266' => 'dzi', 'Duzib133G0907' => 'dzi', 'Duzib133G1034' => 'dzi', 'Duzib138G0207' => 'dzi', 'Duzib138G0491' => 'dzi', 'Duzib151G0812' => 'dzi', 'Duzib151G1166' => 'dzi', 'Duzib168G0192' => 'dzi', 'Duzib211G0077' => 'dzi', 'Duzib212G0429' => 'dzi', 'Duzib212G0472' => 'dzi', 'ECA233G2617' => 'eca', 'ECA236G4188' => 'eca', 'ECA240G0936' => 'eca', 'ECA240G1129' => 'eca', 'ECA247G0623' => 'eca', 'EL10Ac5g10451' => 'bvu', 'EL10Ac5g10453' => 'bvu', 'EL10Ac5g10894' => 'bvu', 'Eucgr.H00192' => 'egr', 'Eucgr.H00193' => 'egr', 'Eucgr.H00194' => 'egr', 'Eucgr.J01562' => 'egr', 'Eucgr.K03301' => 'egr', 'FAN02G0632' => 'fan', 'FAN05G5378' => 'fan', 'FAN09G3247' => 'fan', 'FAN12G0435' => 'fan', 'FAN12G2426' => 'fan', 'FAN14G1707' => 'fan', 'FAN14G4725' => 'fan', 'FAN15G2071' => 'fan', 'FAN17G3065' => 'fan', 'FAN19G1376' => 'fan', 'FAN20G0354' => 'fan', 'FAN20G2429' => 'fan', 'FAN20G2658' => 'fan', 'FAN24G2343' => 'fan', 'FAN27G2362' => 'fan', 'FAN28G1765' => 'fan', 'FvH4_1g16020' => 'fve', 'FvH4_2g04890' => 'fve', 'FvH4_2g22270' => 'fve', 'FvH4_4g02630' => 'fve', 'FvH4_4g02640' => 'fve', 'FvH4_6g02650' => 'fve', 'Glyma.02G140600' => 'gma', 'Glyma.03G159900' => 'gma', 'Glyma.05G234800' => 'gma', 'Glyma.07G269600' => 'gma', 'Glyma.08G042300' => 'gma', 'Glyma.10G033500' => 'gma', 'Glyma.10G185200' => 'gma', 'Glyma.17G004300' => 'gma', 'Glyma.19G161900' => 'gma', 'Glyma.20G205100' => 'gma', 'Glyma.20G205200' => 'gma', 'Gohir.A01G139101' => 'ghi', 'Gohir.A02G035600' => 'ghi', 'Gohir.A02G117901' => 'ghi', 'Gohir.A07G210100' => 'ghi', 'Gohir.A07G210200' => 'ghi', 'Gohir.A08G061100' => 'ghi', 'Gohir.A09G223000' => 'ghi', 'Gohir.A09G223100' => 'ghi', 'Gohir.A10G113900' => 'ghi', 'Gohir.A10G114000' => 'ghi', 'Gohir.D02G042300' => 'ghi', 'Gohir.D07G216100' => 'ghi', 'Gohir.D07G216200' => 'ghi', 'Gohir.D08G070400' => 'ghi', 'Gohir.D09G225000' => 'ghi', 'Gohir.D09G225100' => 'ghi', 'Gohir.D10G152300' => 'ghi', 'Gohir.D10G153200' => 'ghi', 'Gohir.D11G133701' => 'ghi', 'Gorai.004G074100' => 'gra', 'Gorai.005G046800' => 'gra', 'Gorai.006G246500' => 'gra', 'Gorai.006G246600' => 'gra', 'Gorai.007G142900' => 'gra', 'Gorai.011G171000' => 'gra', 'Gorai.011G171100' => 'gra', 'Gorai.013G104300' => 'gra', 'Gorai.013G104400' => 'gra', 'GSVIVG01000754001' => 'vvi', 'GSVIVG01000756001' => 'vvi', 'GSVIVG01010903001' => 'vvi', 'GSVIVG01017623001' => 'vvi', 'GSVIVG01018113001' => 'vvi', 'GSVIVG01018116001' => 'vvi', 'GSVIVG01018118001' => 'vvi', 'HanXRQChr03g0076211' => 'han', 'HanXRQChr03g0092431' => 'han', 'HanXRQChr03g0092441' => 'han', 'HanXRQChr03g0092591' => 'han', 'HanXRQChr03g0092671' => 'han', 'HanXRQChr03g0092681' => 'han', 'HanXRQChr03g0092691' => 'han', 'HanXRQChr03g0092701' => 'han', 'HanXRQChr03g0092721' => 'han', 'HanXRQChr03g0092731' => 'han', 'HanXRQChr04g0113681' => 'han', 'HanXRQChr10g0281371' => 'han', 'HanXRQChr11g0337141' => 'han', 'HanXRQChr13g0424521' => 'han', 'HanXRQChr13g0424531' => 'han', 'HanXRQChr13g0424541' => 'han', 'HanXRQChr16g0498221' => 'han', 'Haze_04377' => 'cav', 'Haze_11298' => 'cav', 'Haze_24547' => 'cav', 'Haze_24550' => 'cav', 'Haze_26587' => 'cav', 'Hma1.2p1_0650F.1_g195410' => 'hma', 'Hma1.2p1_0893F.1_g233470' => 'hma', 'HPP92_006508' => 'vpl', 'HPP92_024780' => 'vpl', 'Hund02688' => 'sun', 'Hund09380' => 'sun', 'Hund09381' => 'sun', 'Hund09832' => 'sun', 'Hund09833' => 'sun', 'Hund11351' => 'sun', 'Hund11513' => 'sun', 'Lalb_Chr06g0162591' => 'lal', 'Lalb_Chr06g0162601' => 'lal', 'Lalb_Chr06g0169321' => 'lal', 'Lalb_Chr09g0330951' => 'lal', 'Lalb_Chr16g0387631' => 'lal', 'Lalb_Chr21g0306241' => 'lal', 'Lalb_Chr25g0290051' => 'lal', 'Lalb_Chr25g0290061' => 'lal', 'Lalb_Chr25g0290071' => 'lal', 'Lj1g0003876' => 'lja', 'Lj1P1207T36' => 'lonja', 'Lj2C1156G12' => 'lonja', 'Lj3A793G39' => 'lonja', 'Lj3C580G2' => 'lonja', 'Lj3C780G2' => 'lonja', 'Lj3C780T4' => 'lonja', 'Lj3C793G9' => 'lonja', 'Lj4g0012960' => 'lja', 'Lj5g0021252' => 'lja', 'Lj5g0021484' => 'lja', 'Lj5g0024528' => 'lja', 'Lj6A399T12' => 'lonja', 'Lj6A656G65' => 'lonja', 'Lsat_1_v5_gn_3_125500' => 'lsa', 'Lsat_1_v5_gn_3_125540' => 'lsa', 'Lsat_1_v5_gn_5_72701' => 'lsa', 'Lsat_1_v5_gn_8_91560' => 'lsa', 'Lsat_1_v5_gn_9_9640' => 'lsa', 'Manes.01G200600' => 'mes', 'Manes.01G200700' => 'mes', 'Manes.03G168900' => 'mes', 'Manes.03G169000' => 'mes', 'Manes.05G085801' => 'mes', 'Manes.05G086200' => 'mes', 'Manes.15G036700' => 'mes', 'Manes.15G036900' => 'mes', 'Mapoly0004s0172' => 'mpo', 'Mapoly0023s0001' => 'mpo', 'Mapoly0142s0012' => 'mpo', 'MBI01_g32854_MAGBIO' => 'mbi', 'MBI11_g24427_MAGBIO' => 'mbi', 'MBI11_g47319_MAGBIO' => 'mbi', 'MCO01G433' => 'mco', 'MD00G1187800' => 'mdo', 'MD04G1226500' => 'mdo', 'MD05G1203900' => 'mdo', 'MD10G1191100' => 'mdo', 'MD12G1243500' => 'mdo', 'MD13G1207000' => 'mdo', 'MD13G1207100' => 'mdo', 'MD16G1208600' => 'mdo', 'Medtr1g050352' => 'mtr', 'Medtr1g070385' => 'mtr', 'Medtr1g070450' => 'mtr', 'Medtr1g075200' => 'mtr', 'Medtr1g075250' => 'mtr', 'Medtr1g075260' => 'mtr', 'Medtr1g475250' => 'mtr', 'Medtr4g075450' => 'mtr', 'Medtr7g096300' => 'mtr', 'Medtr8g105110' => 'mtr', 'MELO3C006470.2' => 'cme', 'MELO3C006471.2' => 'cme', 'MELO3C020772.2' => 'cme', 'MELO3C026780.2' => 'cme', 'MELO3C026781.2' => 'cme', 'Migut.D00390' => 'egut', 'Migut.G00435' => 'egut', 'Migut.G00436' => 'egut', 'Migut.G00718' => 'egut', 'MSTRG.21891' => 'ama', 'MSTRG.26910' => 'ama', 'MSTRG.4099' => 'ama', 'MSTRG.9925' => 'ama', 'Nitab4.5_0000165g0010' => 'nta', 'Nitab4.5_0000209g0180' => 'nta', 'Nitab4.5_0000244g0440' => 'nta', 'Nitab4.5_0000525g0220' => 'nta', 'Nitab4.5_0001597g0020' => 'nta', 'Nitab4.5_0001878g0040' => 'nta', 'Nitab4.5_0001878g0060' => 'nta', 'Nitab4.5_0002838g0100' => 'nta', 'Nitab4.5_0002838g0120' => 'nta', 'Nitab4.5_0004798g0030' => 'nta', 'Nitab4.5_0005420g0010' => 'nta', 'Nitab4.5_0005507g0010' => 'nta', 'Nitab4.5_0005574g0020' => 'nta', 'Nitab4.5_0005838g0010' => 'nta', 'Nitab4.5_0010580g0020' => 'nta', 'Nn1g02599' => 'nnu', 'Nn1g02608' => 'nnu', 'Nn3g17742' => 'nnu', 'Nn3g19534' => 'nnu', 'Nn3g19535' => 'nnu', 'Oeu008790.1' => 'oeu', 'Oeu008792.1' => 'oeu', 'Oeu032590.1' => 'oeu', 'Oeu035349.1' => 'oeu', 'Oeu049791.1' => 'oeu', 'Os01g0774500' => 'osa', 'Os03g0628800' => 'osa', 'Os03g0798600' => 'osa', 'Os05g0508800' => 'osa', 'Peaxi162Scf00036g02018' => 'pax', 'Peaxi162Scf00578g00032' => 'pax', 'Peaxi162Scf00578g00317' => 'pax', 'Peaxi162Scf00785g00114' => 'pax', 'Peaxi162Scf00813g00119' => 'pax', 'Peaxi162Scf00906g00227' => 'pax', 'PGR004G0875' => 'pgr', 'PGR004G2424' => 'pgr', 'PGR031G1239' => 'pgr', 'PGR031G2474' => 'pgr', 'PGR044G0423' => 'pgr', 'PGSC0003DMG400001128' => 'stu', 'PGSC0003DMG400007336' => 'stu', 'PGSC0003DMG400016318' => 'stu', 'PGSC0003DMG400016319' => 'stu', 'PGSC0003DMG400018074' => 'stu', 'Phvul.001G157700' => 'pvu', 'Phvul.002G148550' => 'pvu', 'Phvul.002G320200' => 'pvu', 'Phvul.003G089200' => 'pvu', 'Phvul.007G126000' => 'pvu', 'Phvul.007G126100' => 'pvu', 'Phvul.007G178000' => 'pvu', 'Phvul.007G178200' => 'pvu', 'Potri.002G043000' => 'ptr', 'Potri.002G043200' => 'ptr', 'Potri.003G123750' => 'ptr', 'Potri.005G055401' => 'ptr', 'Potri.005G219700' => 'ptr', 'Potri.005G220000' => 'ptr', 'Potri.008G161901' => 'ptr', 'Potri.008G162000' => 'ptr', 'Potri.008G162400' => 'ptr', 'Potri.010G076900' => 'ptr', 'Pp3c12_9180' => 'ppa', 'Pp3c13_19770' => 'ppa', 'Pp3c14_22950' => 'ppa', 'Pp3c16_12160' => 'ppa', 'Pp3c27_7820' => 'ppa', 'Pp3c2_3490' => 'ppa', 'Pp3c3_23700' => 'ppa', 'Pp3c3_36520' => 'ppa', 'Pp3c4_15250' => 'ppa', 'PRCOL_00007002' => 'pco', 'Prupe.1G030600' => 'ppe', 'Prupe.1G030700' => 'ppe', 'Prupe.6G345200' => 'ppe', 'Prupe.8G230300' => 'ppe', 'Prupe.8G230500' => 'ppe', 'Psat3g059600' => 'psa', 'Psat5g200920' => 'psa', 'Psat6g056440' => 'psa', 'Psat6g057360' => 'psa', 'Psat6g134120' => 'psa', 'Psat6g134160' => 'psa', 'Psat7g008640' => 'psa', 'Psat7g185240' => 'psa', 'PSO017G1330' => 'pso', 'PSO063G6097' => 'pso', 'PSO170G0835' => 'pso', 'PSO170G2499' => 'pso', 'PSO210G5058' => 'pso', 'PSO210G6154' => 'pso', 'PSO585G0031' => 'pso', 'PSO832G0264' => 'pso', 'PSO832G4288' => 'pso', 'QL03p027355' => 'qlo', 'QL03p027430' => 'qlo', 'QL04p081380' => 'qlo', 'QL06p015642' => 'qlo', 'QL06p015650' => 'qlo', 'QL06p015686' => 'qlo', 'QL12p042927' => 'qlo', 'QL93p1863_0035' => 'qlo', 'RcHm_v2.0_Chr3g0450581' => 'rch', 'RcHm_v2.0_Chr4g0390371' => 'rch', 'RcHm_v2.0_Chr4g0390381' => 'rch', 'RcHm_v2.0_Chr4g0390491' => 'rch', 'RcHm_v2.0_Chr4g0390501' => 'rch', 'RcHm_v2.0_Chr6g0289231' => 'rch', 'Rhsim04G0190400' => 'rsi', 'Rhsim04G0190500' => 'rsi', 'Rhsim04G0190600' => 'rsi', 'Rhsim13G0031400' => 'rsi', 'Rhsim13G0165600' => 'rsi', 'RhsimUnG0114600' => 'rsi', 'RhsimUnG0114700' => 'rsi', 'Sabra02G0034800' => 'sbr', 'Sabra02G0035100' => 'sbr', 'Sabra05G0168600' => 'sbr', 'Sabra05G0168800' => 'sbr', 'Sabra08G0123700' => 'sbr', 'Sabra10G0031900' => 'sbr', 'Sabra13G0039000' => 'sbr', 'SalBow2G0782' => 'sbo', 'SalBow2G1403' => 'sbo', 'SalBow4G0074' => 'sbo', 'SalBow4G2635' => 'sbo', 'SalBow5G3010' => 'sbo', 'Sc05g0000870' => 'sci', 'Sc05g0000890' => 'sci', 'Sc13g0005000' => 'sci', 'Sc13g0005030' => 'sci', 'Sc19g0003790' => 'sci', 'Sc19g0003800' => 'sci', 'Sed0003467' => 'sed', 'Sed0009355' => 'sed', 'Sed0009894' => 'sed', 'Sed0011972' => 'sed', 'Sed0021483' => 'sed', 'Sed0021750' => 'sed', 'Sed0026279' => 'sed', 'SEGI_05312' => 'sgi', 'SEGI_10112' => 'sgi', 'SEGI_15835' => 'sgi', 'SEGI_30386' => 'sgi', 'SEGI_34122' => 'sgi', 'SEGI_35063' => 'sgi', 'SGA_v2.0_scaffold101G29794' => 'sas', 'SGA_v2.0_scaffold1G00573' => 'sas', 'SGA_v2.0_scaffold79G25637' => 'sas', 'SGA_v2.0_scaffold88G27283' => 'sas', 'SGA_v2.0_scaffold88G27285' => 'sas', 'SGA_v2.0_scaffold88G27331' => 'sas', 'SHI09937' => 'shi', 'SMO119G0302' => 'smo', 'SMO137G0231' => 'smo', 'SMO367G1151' => 'smo', 'Solyc02g082000.3' => 'sly', 'Solyc06g031670.3' => 'sly', 'Solyc06g053810.3' => 'sly', 'Solyc07g025457.1' => 'sly', 'Solyc08g059740.1' => 'sly', 'Solyc08g059750.3' => 'sly', 'Solyc09g083370.3' => 'sly', 'Solyc12g038950.3' => 'sly', 'Sopen02g026630' => 'spe', 'Sopen06g018930' => 'spe', 'Sopen06g018940' => 'spe', 'Sopen08g009460' => 'spe', 'Sopen09g032290' => 'spe', 'Sp1g03080' => 'spa', 'Sp1g03090' => 'spa', 'Sp1g05480' => 'spa', 'Sp2g07860' => 'spa', 'Sp2g08430' => 'spa', 'Sp2g08440' => 'spa', 'Sp2g26200' => 'spa', 'Sp4g13170' => 'spa', 'Sp6g33840' => 'spa', 'SpUn1204_0010' => 'spa', 'TAR365G0908' => 'tar', 'TAR381G1270' => 'tar', 'TAR381G1651' => 'tar', 'TAR625G1131' => 'tar', 'TAR633G0962' => 'tar', 'TAR633G1729' => 'tar', 'TAR633G1864' => 'tar', 'TAR636G0221' => 'tar', 'TAR636G0314' => 'tar', 'TAR636G3202' => 'tar', 'THA.LOC104800805' => 'tha', 'THA.LOC104801096' => 'tha', 'THA.LOC104801555' => 'tha', 'THA.LOC104808491' => 'tha', 'THA.LOC104808595' => 'tha', 'THA.LOC104815985' => 'tha', 'THA.LOC104822250' => 'tha', 'THA.LOC104826071' => 'tha', 'Thecc.01G265200' => 'tca', 'Thecc.01G265300' => 'tca', 'Thecc.01G265700' => 'tca', 'Thecc.03G109100' => 'tca', 'Thecc.04G245900' => 'tca', 'Thecc.04G246000' => 'tca', 'Thhalv10003334m.g' => 'esa', 'Thhalv10005508m.g' => 'esa', 'Thhalv10005643m.g' => 'esa', 'Thhalv10007316m.g' => 'esa', 'Thhalv10009006m.g' => 'esa', 'Thhalv10009309m.g' => 'esa', 'Thhalv10014917m.g' => 'esa', 'Thhalv10014919m.g' => 'esa', 'Thhalv10015393m.g' => 'esa', 'Thhalv10016515m.g' => 'esa', 'Thhalv10029242m.g' => 'esa', 'TPR.G16654' => 'tpr', 'TPR.G20589' => 'tpr', 'TPR.G23029' => 'tpr', 'TPR.G27731' => 'tpr', 'TPR.G28889' => 'tpr', 'TPR.G28899' => 'tpr', 'TPR.G30846' => 'tpr', 'TPR.G5452' => 'tpr', 'TPR.G5713' => 'tpr', 'TPR.G9046' => 'tpr', 'TPR.G9061' => 'tpr', 'TWI09G1075' => 'twi', 'TWI12G0806' => 'twi', 'TWI18G0108' => 'twi', 'TWI53G1361' => 'twi', 'TWI73G0185' => 'twi', 'TWI73G0427' => 'twi', 'unitig_37.g12001' => 'ugi', 'unitig_747.g21660' => 'ugi', 'unitig_748.g7232' => 'ugi', 'unitig_748.g7315' => 'ugi', 'unitig_85.g27262' => 'ugi', 'unitig_92.g28220' => 'ugi', 'vmacro02632' => 'vma', 'vmacro08410' => 'vma', 'vmacro08411' => 'vma', 'vmacro15407' => 'vma', 'VMungo0251G3619' => 'vmu', 'VMungo0720G1204' => 'vmu', 'VMungo0720G1918' => 'vmu', 'VMungo0720G2387' => 'vmu', 'VMungo0720G2961' => 'vmu', 'VMungo1215G2154' => 'vmu', 'VMungo1383G2411' => 'vmu', 'Zm00001eb051130' => 'zma', 'Zm00001eb116830' => 'zma', 'Zm00001eb116850' => 'zma', 'Zm00001eb151740' => 'zma', 'Zm00001eb292360' => 'zma', 'Zm00001eb301640' => 'zma' ) $gf_id = 'HOM05D000856' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000856' ) $data_identifier = 'HOM05D000856' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 13, 'ath' => (int) 10, 'atr' => (int) 1, 'acertr' => (int) 8, 'cqu' => (int) 6, 'bca' => (int) 21, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 11, 'car' => (int) 9, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 8, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 5, 'fan' => (int) 16, 'fve' => (int) 6, 'gma' => (int) 11, 'ghi' => (int) 19, 'gra' => (int) 9, 'vvi' => (int) 7, 'han' => (int) 17, 'cav' => (int) 5, 'hma' => (int) 2, 'vpl' => (int) 2, 'sun' => (int) 7, 'lal' => (int) 9, 'lja' => (int) 5, 'lonja' => (int) 9, 'lsa' => (int) 5, 'mes' => (int) 8, 'mpo' => (int) 3, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 10, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 15, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 9, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 9, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 6, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 5, 'spa' => (int) 10, 'tar' => (int) 10, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 11, 'tpr' => (int) 11, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 4, 'vmu' => (int) 7, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb301640' $species_info = array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ) $local_species = 'stu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000856', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p00010' => 'bna', 'A03p04160' => 'bna', 'A03p17160' => 'bna', 'A04p23370' => 'bna', 'A05p14860' => 'bna', 'A08p37020' => 'bna', 'A09p08050' => 'bna', 'A09p66800' => 'bna', 'A09p67940' => 'bna', 'A10p02680' => 'bna', 'A10p05320' => 'bna', 'Aa31LG1G20560' => 'aar', 'Aa31LG1G20610' => 'aar', 'Aa31LG1G7810' => 'aar', 'Aa31LG5G3590' => 'aar', 'Aa31LG5G6140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3819' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4683' => 'aag', 'Actinidia04480' => 'ach', 'Actinidia05466' => 'ach', 'Actinidia08445' => 'ach', 'Actinidia21170' => 'ach', 'Actinidia24812' => 'ach', 'Actinidia24951' => 'ach', 'Actinidia40088' => 'ach', 'Ah.02g111660' => 'amhyb', 'Ah.11g048900' => 'amhyb', 'Ah.11g049910' => 'amhyb', 'AL1G13870' => 'aly', 'AL1G13880' => 'aly', 'AL1G16760' => 'aly', 'AL390U10020' => 'aly', 'AL4G25520' => 'aly', 'AL6G19890' => 'aly', 'AL6G19900' => 'aly', 'AL6G19910' => 'aly', 'AL8G40100' => 'aly', 'Aqoxy2G03562' => 'aox', 'Aqoxy5G00316' => 'aox', 'Aqoxy5G00926' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1628KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1H403S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2FU6SJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.882I6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8YRY2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YN1SN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AF70II' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZA8L1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F916KL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHRD8H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KTZ8QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S22EMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8M29T' => 'arhy', 'AT1G04270' => 'ath', 'AT1G04280' => 'ath', 'AT1G06750' => 'ath', 'AT1G33850' => 'ath', 'AT2G30630' => 'ath', 'AT5G09490' => 'ath', 'AT5G09500' => 'ath', 'AT5G09510' => 'ath', 'AT5G43640' => 'ath', 'AT5G63070' => 'ath', 'ATR0605G315' => 'atr', 'Atru.chr11.175' => 'acertr', 'Atru.chr11.653' => 'acertr', 'Atru.chr3.1616' => 'acertr', 'Atru.chr4.2230' => 'acertr', 'Atru.chr4.2232' => 'acertr', 'Atru.chr5.1598' => 'acertr', 'Atru.chr5.1600' => 'acertr', 'Atru.chr5.2188' => 'acertr', 'AUR62008326' => 'cqu', 'AUR62011922' => 'cqu', 'AUR62011924' => 'cqu', 'AUR62021771' => 'cqu', 'AUR62032237' => 'cqu', 'AUR62032240' => 'cqu', 'BcaB01g05572' => 'bca', 'BcaB02g10337' => 'bca', 'BcaB04g19944' => 'bca', 'BcaB05g21548' => 'bca', 'BcaB05g21549' => 'bca', 'BcaB05g23227' => 'bca', 'BcaB06g26256' => 'bca', 'BcaB06g26257' => 'bca', 'BcaB06g28379' => 'bca', 'BcaC02g11159' => 'bca', 'BcaC03g13258' => 'bca', 'BcaC03g13259' => 'bca', 'BcaC05g24456' => 'bca', 'BcaC05g24457' => 'bca', 'BcaC07g36922' => 'bca', 'BcaC07g36923' => 'bca', 'BcaC07g42050' => 'bca', 'BcaC07g42176' => 'bca', 'BcaC07g42195' => 'bca', 'BcaC07g42196' => 'bca', 'BcaNung06674' => 'bca', 'BolC2t06351H' => 'bol', 'BolC2t06352H' => 'bol', 'BolC3t12993H' => 'bol', 'BolC4t23525H' => 'bol', 'BolC4t27475H' => 'bol', 'BolC5t29025H' => 'bol', 'BolC5t29026H' => 'bol', 'BolC8t46898H' => 'bol', 'BolC8t46899H' => 'bol', 'BolC8t52630H' => 'bol', 'BolC8t52765H' => 'bol', 'BolC9t53824H' => 'bol', 'BraA03t09760Z' => 'bra', 'BraA03t10990Z' => 'bra', 'BraA05t20413Z' => 'bra', 'BraA08t35602Z' => 'bra', 'BraA09t36458Z' => 'bra', 'BraA09t42018Z' => 'bra', 'BraA09t42129Z' => 'bra', 'BraA10t42536Z' => 'bra', 'BraA10t42537Z' => 'bra', 'C01p10690' => 'bna', 'C02p03890' => 'bna', 'C02p03900' => 'bna', 'C03p04620' => 'bna', 'C04p19870' => 'bna', 'C04p59670' => 'bna', 'C05p02460' => 'bna', 'C05p02470' => 'bna', 'C08p00980' => 'bna', 'C08p00990' => 'bna', 'C08p51030' => 'bna', 'C08p52360' => 'bna', 'C09p09120' => 'bna', 'CAN.G19.15' => 'can', 'CAN.G251.10' => 'can', 'CAN.G251.9' => 'can', 'CAN.G398.24' => 'can', 'CAN.G410.32' => 'can', 'CAN.G881.2' => 'can', 'CANSAT01G3025' => 'cansat', 'CANSAT78G1211' => 'cansat', 'CANSAT78G1218' => 'cansat', 'CANSAT78G1521' => 'cansat', 'CANSAT78G1670' => 'cansat', 'CARHR003600' => 'chi', 'CARHR003610' => 'chi', 'CARHR006290' => 'chi', 'CARHR006430' => 'chi', 'CARHR124110' => 'chi', 'CARHR203870' => 'chi', 'CARHR203880' => 'chi', 'CARHR203890' => 'chi', 'CARHR276880' => 'chi', 'Carub.0001s0346' => 'cru', 'Carub.0001s0347' => 'cru', 'Carub.0001s0607' => 'cru', 'Carub.0003s2768' => 'cru', 'Carub.0003s2769' => 'cru', 'Carub.0004s1178' => 'cru', 'Carub.0006s0806' => 'cru', 'Carub.0006s0807' => 'cru', 'Carub.0006s0808' => 'cru', 'Carub.0008s0501' => 'cru', 'Carub.0008s2379' => 'cru', 'Ca_08655_v3' => 'car', 'Ca_08922_v3' => 'car', 'Ca_08923_v3' => 'car', 'Ca_09119_v3' => 'car', 'Ca_09703_v3' => 'car', 'Ca_09705_v3' => 'car', 'Ca_09835_v3' => 'car', 'Ca_26403_v3' => 'car', 'Ca_30719_v3' => 'car', 'CBR_g17958' => 'cbr', 'CBR_g40516' => 'cbr', 'Cc00_g05350' => 'ccan', 'Cc01_g18690' => 'ccan', 'Cc03_g04830' => 'ccan', 'Cc03_g04850' => 'ccan', 'CDE02G4469' => 'cde', 'CDE06G0883' => 'cde', 'CDE06G1295' => 'cde', 'CDE06G1390' => 'cde', 'CDE07G0584' => 'cde', 'CDE07G1084' => 'cde', 'CDE08G1259' => 'cde', 'Cfa002341' => 'cfa', 'Cfa024337' => 'cfa', 'Ciclev10004749m.g' => 'ccl', 'Ciclev10006127m.g' => 'ccl', 'Ciclev10019720m.g' => 'ccl', 'Ciclev10022652m.g' => 'ccl', 'CiPaw.01G190400' => 'cil', 'CiPaw.01G190500' => 'cil', 'CiPaw.02G116400' => 'cil', 'CiPaw.02G116500' => 'cil', 'CiPaw.04G183000' => 'cil', 'CiPaw.04G183300' => 'cil', 'ClCG05G004610' => 'cla', 'ClCG05G004620' => 'cla', 'ClCG06G006730' => 'cla', 'ClCG06G006740' => 'cla', 'ClCG11G003690' => 'cla', 'COL.COLO4_08276' => 'col', 'COL.COLO4_08277' => 'col', 'COL.COLO4_15787' => 'col', 'COL.COLO4_15789' => 'col', 'Cpa.g.c44815' => 'cpa', 'Cpa.g.sc52.144' => 'cpa', 'Cpa.g.sc58.46' => 'cpa', 'Cpa.g.sc58.47' => 'cpa', 'Cre08.g360900' => 'cre', 'CsaV3_2G013030' => 'csa', 'CsaV3_2G013050' => 'csa', 'CsaV3_2G015620' => 'csa', 'CsaV3_3G012590' => 'csa', 'CsaV3_3G012600' => 'csa', 'CSS0001641' => 'camsi', 'CSS0008310' => 'camsi', 'CSS0013011' => 'camsi', 'CSS0017147' => 'camsi', 'CSS0022970' => 'camsi', 'CSS0025655' => 'camsi', 'CSS0028665' => 'camsi', 'CSS0029117' => 'camsi', 'CSS0032024' => 'camsi', 'CSS0039681' => 'camsi', 'CSS0046516' => 'camsi', 'CSS0050307' => 'camsi', 'DCAR_005871' => 'dca', 'DCAR_007342' => 'dca', 'DCAR_024228' => 'dca', 'DCAR_027277' => 'dca', 'DCAR_030718' => 'dca', 'Dinv20287' => 'din', 'Dinv22461' => 'din', 'Dinv22464' => 'din', 'Dinv29912' => 'din', 'Dinv29913' => 'din', 'Dinv34580' => 'din', 'Dinv34582' => 'din', 'Dinv44632' => 'din', 'Duzib052G0266' => 'dzi', 'Duzib133G0907' => 'dzi', 'Duzib133G1034' => 'dzi', 'Duzib138G0207' => 'dzi', 'Duzib138G0491' => 'dzi', 'Duzib151G0812' => 'dzi', 'Duzib151G1166' => 'dzi', 'Duzib168G0192' => 'dzi', 'Duzib211G0077' => 'dzi', 'Duzib212G0429' => 'dzi', 'Duzib212G0472' => 'dzi', 'ECA233G2617' => 'eca', 'ECA236G4188' => 'eca', 'ECA240G0936' => 'eca', 'ECA240G1129' => 'eca', 'ECA247G0623' => 'eca', 'EL10Ac5g10451' => 'bvu', 'EL10Ac5g10453' => 'bvu', 'EL10Ac5g10894' => 'bvu', 'Eucgr.H00192' => 'egr', 'Eucgr.H00193' => 'egr', 'Eucgr.H00194' => 'egr', 'Eucgr.J01562' => 'egr', 'Eucgr.K03301' => 'egr', 'FAN02G0632' => 'fan', 'FAN05G5378' => 'fan', 'FAN09G3247' => 'fan', 'FAN12G0435' => 'fan', 'FAN12G2426' => 'fan', 'FAN14G1707' => 'fan', 'FAN14G4725' => 'fan', 'FAN15G2071' => 'fan', 'FAN17G3065' => 'fan', 'FAN19G1376' => 'fan', 'FAN20G0354' => 'fan', 'FAN20G2429' => 'fan', 'FAN20G2658' => 'fan', 'FAN24G2343' => 'fan', 'FAN27G2362' => 'fan', 'FAN28G1765' => 'fan', 'FvH4_1g16020' => 'fve', 'FvH4_2g04890' => 'fve', 'FvH4_2g22270' => 'fve', 'FvH4_4g02630' => 'fve', 'FvH4_4g02640' => 'fve', 'FvH4_6g02650' => 'fve', 'Glyma.02G140600' => 'gma', 'Glyma.03G159900' => 'gma', 'Glyma.05G234800' => 'gma', 'Glyma.07G269600' => 'gma', 'Glyma.08G042300' => 'gma', 'Glyma.10G033500' => 'gma', 'Glyma.10G185200' => 'gma', 'Glyma.17G004300' => 'gma', 'Glyma.19G161900' => 'gma', 'Glyma.20G205100' => 'gma', 'Glyma.20G205200' => 'gma', 'Gohir.A01G139101' => 'ghi', 'Gohir.A02G035600' => 'ghi', 'Gohir.A02G117901' => 'ghi', 'Gohir.A07G210100' => 'ghi', 'Gohir.A07G210200' => 'ghi', 'Gohir.A08G061100' => 'ghi', 'Gohir.A09G223000' => 'ghi', 'Gohir.A09G223100' => 'ghi', 'Gohir.A10G113900' => 'ghi', 'Gohir.A10G114000' => 'ghi', 'Gohir.D02G042300' => 'ghi', 'Gohir.D07G216100' => 'ghi', 'Gohir.D07G216200' => 'ghi', 'Gohir.D08G070400' => 'ghi', 'Gohir.D09G225000' => 'ghi', 'Gohir.D09G225100' => 'ghi', 'Gohir.D10G152300' => 'ghi', 'Gohir.D10G153200' => 'ghi', 'Gohir.D11G133701' => 'ghi', 'Gorai.004G074100' => 'gra', 'Gorai.005G046800' => 'gra', 'Gorai.006G246500' => 'gra', 'Gorai.006G246600' => 'gra', 'Gorai.007G142900' => 'gra', 'Gorai.011G171000' => 'gra', 'Gorai.011G171100' => 'gra', 'Gorai.013G104300' => 'gra', 'Gorai.013G104400' => 'gra', 'GSVIVG01000754001' => 'vvi', 'GSVIVG01000756001' => 'vvi', 'GSVIVG01010903001' => 'vvi', 'GSVIVG01017623001' => 'vvi', 'GSVIVG01018113001' => 'vvi', 'GSVIVG01018116001' => 'vvi', 'GSVIVG01018118001' => 'vvi', 'HanXRQChr03g0076211' => 'han', 'HanXRQChr03g0092431' => 'han', 'HanXRQChr03g0092441' => 'han', 'HanXRQChr03g0092591' => 'han', 'HanXRQChr03g0092671' => 'han', 'HanXRQChr03g0092681' => 'han', 'HanXRQChr03g0092691' => 'han', 'HanXRQChr03g0092701' => 'han', 'HanXRQChr03g0092721' => 'han', 'HanXRQChr03g0092731' => 'han', 'HanXRQChr04g0113681' => 'han', 'HanXRQChr10g0281371' => 'han', 'HanXRQChr11g0337141' => 'han', 'HanXRQChr13g0424521' => 'han', 'HanXRQChr13g0424531' => 'han', 'HanXRQChr13g0424541' => 'han', 'HanXRQChr16g0498221' => 'han', 'Haze_04377' => 'cav', 'Haze_11298' => 'cav', 'Haze_24547' => 'cav', 'Haze_24550' => 'cav', 'Haze_26587' => 'cav', 'Hma1.2p1_0650F.1_g195410' => 'hma', 'Hma1.2p1_0893F.1_g233470' => 'hma', 'HPP92_006508' => 'vpl', 'HPP92_024780' => 'vpl', 'Hund02688' => 'sun', 'Hund09380' => 'sun', 'Hund09381' => 'sun', 'Hund09832' => 'sun', 'Hund09833' => 'sun', 'Hund11351' => 'sun', 'Hund11513' => 'sun', 'Lalb_Chr06g0162591' => 'lal', 'Lalb_Chr06g0162601' => 'lal', 'Lalb_Chr06g0169321' => 'lal', 'Lalb_Chr09g0330951' => 'lal', 'Lalb_Chr16g0387631' => 'lal', 'Lalb_Chr21g0306241' => 'lal', 'Lalb_Chr25g0290051' => 'lal', 'Lalb_Chr25g0290061' => 'lal', 'Lalb_Chr25g0290071' => 'lal', 'Lj1g0003876' => 'lja', 'Lj1P1207T36' => 'lonja', 'Lj2C1156G12' => 'lonja', 'Lj3A793G39' => 'lonja', 'Lj3C580G2' => 'lonja', 'Lj3C780G2' => 'lonja', 'Lj3C780T4' => 'lonja', 'Lj3C793G9' => 'lonja', 'Lj4g0012960' => 'lja', 'Lj5g0021252' => 'lja', 'Lj5g0021484' => 'lja', 'Lj5g0024528' => 'lja', 'Lj6A399T12' => 'lonja', 'Lj6A656G65' => 'lonja', 'Lsat_1_v5_gn_3_125500' => 'lsa', 'Lsat_1_v5_gn_3_125540' => 'lsa', 'Lsat_1_v5_gn_5_72701' => 'lsa', 'Lsat_1_v5_gn_8_91560' => 'lsa', 'Lsat_1_v5_gn_9_9640' => 'lsa', 'Manes.01G200600' => 'mes', 'Manes.01G200700' => 'mes', 'Manes.03G168900' => 'mes', 'Manes.03G169000' => 'mes', 'Manes.05G085801' => 'mes', 'Manes.05G086200' => 'mes', 'Manes.15G036700' => 'mes', 'Manes.15G036900' => 'mes', 'Mapoly0004s0172' => 'mpo', 'Mapoly0023s0001' => 'mpo', 'Mapoly0142s0012' => 'mpo', 'MBI01_g32854_MAGBIO' => 'mbi', 'MBI11_g24427_MAGBIO' => 'mbi', 'MBI11_g47319_MAGBIO' => 'mbi', 'MCO01G433' => 'mco', 'MD00G1187800' => 'mdo', 'MD04G1226500' => 'mdo', 'MD05G1203900' => 'mdo', 'MD10G1191100' => 'mdo', 'MD12G1243500' => 'mdo', 'MD13G1207000' => 'mdo', 'MD13G1207100' => 'mdo', 'MD16G1208600' => 'mdo', 'Medtr1g050352' => 'mtr', 'Medtr1g070385' => 'mtr', 'Medtr1g070450' => 'mtr', 'Medtr1g075200' => 'mtr', 'Medtr1g075250' => 'mtr', 'Medtr1g075260' => 'mtr', 'Medtr1g475250' => 'mtr', 'Medtr4g075450' => 'mtr', 'Medtr7g096300' => 'mtr', 'Medtr8g105110' => 'mtr', 'MELO3C006470.2' => 'cme', 'MELO3C006471.2' => 'cme', 'MELO3C020772.2' => 'cme', 'MELO3C026780.2' => 'cme', 'MELO3C026781.2' => 'cme', 'Migut.D00390' => 'egut', 'Migut.G00435' => 'egut', 'Migut.G00436' => 'egut', 'Migut.G00718' => 'egut', 'MSTRG.21891' => 'ama', 'MSTRG.26910' => 'ama', 'MSTRG.4099' => 'ama', 'MSTRG.9925' => 'ama', 'Nitab4.5_0000165g0010' => 'nta', 'Nitab4.5_0000209g0180' => 'nta', 'Nitab4.5_0000244g0440' => 'nta', 'Nitab4.5_0000525g0220' => 'nta', 'Nitab4.5_0001597g0020' => 'nta', 'Nitab4.5_0001878g0040' => 'nta', 'Nitab4.5_0001878g0060' => 'nta', 'Nitab4.5_0002838g0100' => 'nta', 'Nitab4.5_0002838g0120' => 'nta', 'Nitab4.5_0004798g0030' => 'nta', 'Nitab4.5_0005420g0010' => 'nta', 'Nitab4.5_0005507g0010' => 'nta', 'Nitab4.5_0005574g0020' => 'nta', 'Nitab4.5_0005838g0010' => 'nta', 'Nitab4.5_0010580g0020' => 'nta', 'Nn1g02599' => 'nnu', 'Nn1g02608' => 'nnu', 'Nn3g17742' => 'nnu', 'Nn3g19534' => 'nnu', 'Nn3g19535' => 'nnu', 'Oeu008790.1' => 'oeu', 'Oeu008792.1' => 'oeu', 'Oeu032590.1' => 'oeu', 'Oeu035349.1' => 'oeu', 'Oeu049791.1' => 'oeu', 'Os01g0774500' => 'osa', 'Os03g0628800' => 'osa', 'Os03g0798600' => 'osa', 'Os05g0508800' => 'osa', 'Peaxi162Scf00036g02018' => 'pax', 'Peaxi162Scf00578g00032' => 'pax', 'Peaxi162Scf00578g00317' => 'pax', 'Peaxi162Scf00785g00114' => 'pax', 'Peaxi162Scf00813g00119' => 'pax', 'Peaxi162Scf00906g00227' => 'pax', 'PGR004G0875' => 'pgr', 'PGR004G2424' => 'pgr', 'PGR031G1239' => 'pgr', 'PGR031G2474' => 'pgr', 'PGR044G0423' => 'pgr', 'PGSC0003DMG400001128' => 'stu', 'PGSC0003DMG400007336' => 'stu', 'PGSC0003DMG400016318' => 'stu', 'PGSC0003DMG400016319' => 'stu', 'PGSC0003DMG400018074' => 'stu', 'Phvul.001G157700' => 'pvu', 'Phvul.002G148550' => 'pvu', 'Phvul.002G320200' => 'pvu', 'Phvul.003G089200' => 'pvu', 'Phvul.007G126000' => 'pvu', 'Phvul.007G126100' => 'pvu', 'Phvul.007G178000' => 'pvu', 'Phvul.007G178200' => 'pvu', 'Potri.002G043000' => 'ptr', 'Potri.002G043200' => 'ptr', 'Potri.003G123750' => 'ptr', 'Potri.005G055401' => 'ptr', 'Potri.005G219700' => 'ptr', 'Potri.005G220000' => 'ptr', 'Potri.008G161901' => 'ptr', 'Potri.008G162000' => 'ptr', 'Potri.008G162400' => 'ptr', 'Potri.010G076900' => 'ptr', 'Pp3c12_9180' => 'ppa', 'Pp3c13_19770' => 'ppa', 'Pp3c14_22950' => 'ppa', 'Pp3c16_12160' => 'ppa', 'Pp3c27_7820' => 'ppa', 'Pp3c2_3490' => 'ppa', 'Pp3c3_23700' => 'ppa', 'Pp3c3_36520' => 'ppa', 'Pp3c4_15250' => 'ppa', 'PRCOL_00007002' => 'pco', 'Prupe.1G030600' => 'ppe', 'Prupe.1G030700' => 'ppe', 'Prupe.6G345200' => 'ppe', 'Prupe.8G230300' => 'ppe', 'Prupe.8G230500' => 'ppe', 'Psat3g059600' => 'psa', 'Psat5g200920' => 'psa', 'Psat6g056440' => 'psa', 'Psat6g057360' => 'psa', 'Psat6g134120' => 'psa', 'Psat6g134160' => 'psa', 'Psat7g008640' => 'psa', 'Psat7g185240' => 'psa', 'PSO017G1330' => 'pso', 'PSO063G6097' => 'pso', 'PSO170G0835' => 'pso', 'PSO170G2499' => 'pso', 'PSO210G5058' => 'pso', 'PSO210G6154' => 'pso', 'PSO585G0031' => 'pso', 'PSO832G0264' => 'pso', 'PSO832G4288' => 'pso', 'QL03p027355' => 'qlo', 'QL03p027430' => 'qlo', 'QL04p081380' => 'qlo', 'QL06p015642' => 'qlo', 'QL06p015650' => 'qlo', 'QL06p015686' => 'qlo', 'QL12p042927' => 'qlo', 'QL93p1863_0035' => 'qlo', 'RcHm_v2.0_Chr3g0450581' => 'rch', 'RcHm_v2.0_Chr4g0390371' => 'rch', 'RcHm_v2.0_Chr4g0390381' => 'rch', 'RcHm_v2.0_Chr4g0390491' => 'rch', 'RcHm_v2.0_Chr4g0390501' => 'rch', 'RcHm_v2.0_Chr6g0289231' => 'rch', 'Rhsim04G0190400' => 'rsi', 'Rhsim04G0190500' => 'rsi', 'Rhsim04G0190600' => 'rsi', 'Rhsim13G0031400' => 'rsi', 'Rhsim13G0165600' => 'rsi', 'RhsimUnG0114600' => 'rsi', 'RhsimUnG0114700' => 'rsi', 'Sabra02G0034800' => 'sbr', 'Sabra02G0035100' => 'sbr', 'Sabra05G0168600' => 'sbr', 'Sabra05G0168800' => 'sbr', 'Sabra08G0123700' => 'sbr', 'Sabra10G0031900' => 'sbr', 'Sabra13G0039000' => 'sbr', 'SalBow2G0782' => 'sbo', 'SalBow2G1403' => 'sbo', 'SalBow4G0074' => 'sbo', 'SalBow4G2635' => 'sbo', 'SalBow5G3010' => 'sbo', 'Sc05g0000870' => 'sci', 'Sc05g0000890' => 'sci', 'Sc13g0005000' => 'sci', 'Sc13g0005030' => 'sci', 'Sc19g0003790' => 'sci', 'Sc19g0003800' => 'sci', 'Sed0003467' => 'sed', 'Sed0009355' => 'sed', 'Sed0009894' => 'sed', 'Sed0011972' => 'sed', 'Sed0021483' => 'sed', 'Sed0021750' => 'sed', 'Sed0026279' => 'sed', 'SEGI_05312' => 'sgi', 'SEGI_10112' => 'sgi', 'SEGI_15835' => 'sgi', 'SEGI_30386' => 'sgi', 'SEGI_34122' => 'sgi', 'SEGI_35063' => 'sgi', 'SGA_v2.0_scaffold101G29794' => 'sas', 'SGA_v2.0_scaffold1G00573' => 'sas', 'SGA_v2.0_scaffold79G25637' => 'sas', 'SGA_v2.0_scaffold88G27283' => 'sas', 'SGA_v2.0_scaffold88G27285' => 'sas', 'SGA_v2.0_scaffold88G27331' => 'sas', 'SHI09937' => 'shi', 'SMO119G0302' => 'smo', 'SMO137G0231' => 'smo', 'SMO367G1151' => 'smo', 'Solyc02g082000.3' => 'sly', 'Solyc06g031670.3' => 'sly', 'Solyc06g053810.3' => 'sly', 'Solyc07g025457.1' => 'sly', 'Solyc08g059740.1' => 'sly', 'Solyc08g059750.3' => 'sly', 'Solyc09g083370.3' => 'sly', 'Solyc12g038950.3' => 'sly', 'Sopen02g026630' => 'spe', 'Sopen06g018930' => 'spe', 'Sopen06g018940' => 'spe', 'Sopen08g009460' => 'spe', 'Sopen09g032290' => 'spe', 'Sp1g03080' => 'spa', 'Sp1g03090' => 'spa', 'Sp1g05480' => 'spa', 'Sp2g07860' => 'spa', 'Sp2g08430' => 'spa', 'Sp2g08440' => 'spa', 'Sp2g26200' => 'spa', 'Sp4g13170' => 'spa', 'Sp6g33840' => 'spa', 'SpUn1204_0010' => 'spa', 'TAR365G0908' => 'tar', 'TAR381G1270' => 'tar', 'TAR381G1651' => 'tar', 'TAR625G1131' => 'tar', 'TAR633G0962' => 'tar', 'TAR633G1729' => 'tar', 'TAR633G1864' => 'tar', 'TAR636G0221' => 'tar', 'TAR636G0314' => 'tar', 'TAR636G3202' => 'tar', 'THA.LOC104800805' => 'tha', 'THA.LOC104801096' => 'tha', 'THA.LOC104801555' => 'tha', 'THA.LOC104808491' => 'tha', 'THA.LOC104808595' => 'tha', 'THA.LOC104815985' => 'tha', 'THA.LOC104822250' => 'tha', 'THA.LOC104826071' => 'tha', 'Thecc.01G265200' => 'tca', 'Thecc.01G265300' => 'tca', 'Thecc.01G265700' => 'tca', 'Thecc.03G109100' => 'tca', 'Thecc.04G245900' => 'tca', 'Thecc.04G246000' => 'tca', 'Thhalv10003334m.g' => 'esa', 'Thhalv10005508m.g' => 'esa', 'Thhalv10005643m.g' => 'esa', 'Thhalv10007316m.g' => 'esa', 'Thhalv10009006m.g' => 'esa', 'Thhalv10009309m.g' => 'esa', 'Thhalv10014917m.g' => 'esa', 'Thhalv10014919m.g' => 'esa', 'Thhalv10015393m.g' => 'esa', 'Thhalv10016515m.g' => 'esa', 'Thhalv10029242m.g' => 'esa', 'TPR.G16654' => 'tpr', 'TPR.G20589' => 'tpr', 'TPR.G23029' => 'tpr', 'TPR.G27731' => 'tpr', 'TPR.G28889' => 'tpr', 'TPR.G28899' => 'tpr', 'TPR.G30846' => 'tpr', 'TPR.G5452' => 'tpr', 'TPR.G5713' => 'tpr', 'TPR.G9046' => 'tpr', 'TPR.G9061' => 'tpr', 'TWI09G1075' => 'twi', 'TWI12G0806' => 'twi', 'TWI18G0108' => 'twi', 'TWI53G1361' => 'twi', 'TWI73G0185' => 'twi', 'TWI73G0427' => 'twi', 'unitig_37.g12001' => 'ugi', 'unitig_747.g21660' => 'ugi', 'unitig_748.g7232' => 'ugi', 'unitig_748.g7315' => 'ugi', 'unitig_85.g27262' => 'ugi', 'unitig_92.g28220' => 'ugi', 'vmacro02632' => 'vma', 'vmacro08410' => 'vma', 'vmacro08411' => 'vma', 'vmacro15407' => 'vma', 'VMungo0251G3619' => 'vmu', 'VMungo0720G1204' => 'vmu', 'VMungo0720G1918' => 'vmu', 'VMungo0720G2387' => 'vmu', 'VMungo0720G2961' => 'vmu', 'VMungo1215G2154' => 'vmu', 'VMungo1383G2411' => 'vmu', 'Zm00001eb051130' => 'zma', 'Zm00001eb116830' => 'zma', 'Zm00001eb116850' => 'zma', 'Zm00001eb151740' => 'zma', 'Zm00001eb292360' => 'zma', 'Zm00001eb301640' => 'zma' ), 'gf_id' => 'HOM05D000856', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000856' ), 'data_identifier' => 'HOM05D000856', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000856', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p00010' => 'bna', 'A03p04160' => 'bna', 'A03p17160' => 'bna', 'A04p23370' => 'bna', 'A05p14860' => 'bna', 'A08p37020' => 'bna', 'A09p08050' => 'bna', 'A09p66800' => 'bna', 'A09p67940' => 'bna', 'A10p02680' => 'bna', 'A10p05320' => 'bna', 'Aa31LG1G20560' => 'aar', 'Aa31LG1G20610' => 'aar', 'Aa31LG1G7810' => 'aar', 'Aa31LG5G3590' => 'aar', 'Aa31LG5G6140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3819' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4683' => 'aag', 'Actinidia04480' => 'ach', 'Actinidia05466' => 'ach', 'Actinidia08445' => 'ach', 'Actinidia21170' => 'ach', 'Actinidia24812' => 'ach', 'Actinidia24951' => 'ach', 'Actinidia40088' => 'ach', 'Ah.02g111660' => 'amhyb', 'Ah.11g048900' => 'amhyb', 'Ah.11g049910' => 'amhyb', 'AL1G13870' => 'aly', 'AL1G13880' => 'aly', 'AL1G16760' => 'aly', 'AL390U10020' => 'aly', 'AL4G25520' => 'aly', 'AL6G19890' => 'aly', 'AL6G19900' => 'aly', 'AL6G19910' => 'aly', 'AL8G40100' => 'aly', 'Aqoxy2G03562' => 'aox', 'Aqoxy5G00316' => 'aox', 'Aqoxy5G00926' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1628KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1H403S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2FU6SJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.882I6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8YRY2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YN1SN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AF70II' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZA8L1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F916KL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHRD8H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KTZ8QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S22EMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8M29T' => 'arhy', 'AT1G04270' => 'ath', 'AT1G04280' => 'ath', 'AT1G06750' => 'ath', 'AT1G33850' => 'ath', 'AT2G30630' => 'ath', 'AT5G09490' => 'ath', 'AT5G09500' => 'ath', 'AT5G09510' => 'ath', 'AT5G43640' => 'ath', 'AT5G63070' => 'ath', 'ATR0605G315' => 'atr', 'Atru.chr11.175' => 'acertr', 'Atru.chr11.653' => 'acertr', 'Atru.chr3.1616' => 'acertr', 'Atru.chr4.2230' => 'acertr', 'Atru.chr4.2232' => 'acertr', 'Atru.chr5.1598' => 'acertr', 'Atru.chr5.1600' => 'acertr', 'Atru.chr5.2188' => 'acertr', 'AUR62008326' => 'cqu', 'AUR62011922' => 'cqu', 'AUR62011924' => 'cqu', 'AUR62021771' => 'cqu', 'AUR62032237' => 'cqu', 'AUR62032240' => 'cqu', 'BcaB01g05572' => 'bca', 'BcaB02g10337' => 'bca', 'BcaB04g19944' => 'bca', 'BcaB05g21548' => 'bca', 'BcaB05g21549' => 'bca', 'BcaB05g23227' => 'bca', 'BcaB06g26256' => 'bca', 'BcaB06g26257' => 'bca', 'BcaB06g28379' => 'bca', 'BcaC02g11159' => 'bca', 'BcaC03g13258' => 'bca', 'BcaC03g13259' => 'bca', 'BcaC05g24456' => 'bca', 'BcaC05g24457' => 'bca', 'BcaC07g36922' => 'bca', 'BcaC07g36923' => 'bca', 'BcaC07g42050' => 'bca', 'BcaC07g42176' => 'bca', 'BcaC07g42195' => 'bca', 'BcaC07g42196' => 'bca', 'BcaNung06674' => 'bca', 'BolC2t06351H' => 'bol', 'BolC2t06352H' => 'bol', 'BolC3t12993H' => 'bol', 'BolC4t23525H' => 'bol', 'BolC4t27475H' => 'bol', 'BolC5t29025H' => 'bol', 'BolC5t29026H' => 'bol', 'BolC8t46898H' => 'bol', 'BolC8t46899H' => 'bol', 'BolC8t52630H' => 'bol', 'BolC8t52765H' => 'bol', 'BolC9t53824H' => 'bol', 'BraA03t09760Z' => 'bra', 'BraA03t10990Z' => 'bra', 'BraA05t20413Z' => 'bra', 'BraA08t35602Z' => 'bra', 'BraA09t36458Z' => 'bra', 'BraA09t42018Z' => 'bra', 'BraA09t42129Z' => 'bra', 'BraA10t42536Z' => 'bra', 'BraA10t42537Z' => 'bra', 'C01p10690' => 'bna', 'C02p03890' => 'bna', 'C02p03900' => 'bna', 'C03p04620' => 'bna', 'C04p19870' => 'bna', 'C04p59670' => 'bna', 'C05p02460' => 'bna', 'C05p02470' => 'bna', 'C08p00980' => 'bna', 'C08p00990' => 'bna', 'C08p51030' => 'bna', 'C08p52360' => 'bna', 'C09p09120' => 'bna', 'CAN.G19.15' => 'can', 'CAN.G251.10' => 'can', 'CAN.G251.9' => 'can', 'CAN.G398.24' => 'can', 'CAN.G410.32' => 'can', 'CAN.G881.2' => 'can', 'CANSAT01G3025' => 'cansat', 'CANSAT78G1211' => 'cansat', 'CANSAT78G1218' => 'cansat', 'CANSAT78G1521' => 'cansat', 'CANSAT78G1670' => 'cansat', 'CARHR003600' => 'chi', 'CARHR003610' => 'chi', 'CARHR006290' => 'chi', 'CARHR006430' => 'chi', 'CARHR124110' => 'chi', 'CARHR203870' => 'chi', 'CARHR203880' => 'chi', 'CARHR203890' => 'chi', 'CARHR276880' => 'chi', 'Carub.0001s0346' => 'cru', 'Carub.0001s0347' => 'cru', 'Carub.0001s0607' => 'cru', 'Carub.0003s2768' => 'cru', 'Carub.0003s2769' => 'cru', 'Carub.0004s1178' => 'cru', 'Carub.0006s0806' => 'cru', 'Carub.0006s0807' => 'cru', 'Carub.0006s0808' => 'cru', 'Carub.0008s0501' => 'cru', 'Carub.0008s2379' => 'cru', 'Ca_08655_v3' => 'car', 'Ca_08922_v3' => 'car', 'Ca_08923_v3' => 'car', 'Ca_09119_v3' => 'car', 'Ca_09703_v3' => 'car', 'Ca_09705_v3' => 'car', 'Ca_09835_v3' => 'car', 'Ca_26403_v3' => 'car', 'Ca_30719_v3' => 'car', 'CBR_g17958' => 'cbr', 'CBR_g40516' => 'cbr', 'Cc00_g05350' => 'ccan', 'Cc01_g18690' => 'ccan', 'Cc03_g04830' => 'ccan', 'Cc03_g04850' => 'ccan', 'CDE02G4469' => 'cde', 'CDE06G0883' => 'cde', 'CDE06G1295' => 'cde', 'CDE06G1390' => 'cde', 'CDE07G0584' => 'cde', 'CDE07G1084' => 'cde', 'CDE08G1259' => 'cde', 'Cfa002341' => 'cfa', 'Cfa024337' => 'cfa', 'Ciclev10004749m.g' => 'ccl', 'Ciclev10006127m.g' => 'ccl', 'Ciclev10019720m.g' => 'ccl', 'Ciclev10022652m.g' => 'ccl', 'CiPaw.01G190400' => 'cil', 'CiPaw.01G190500' => 'cil', 'CiPaw.02G116400' => 'cil', 'CiPaw.02G116500' => 'cil', 'CiPaw.04G183000' => 'cil', 'CiPaw.04G183300' => 'cil', 'ClCG05G004610' => 'cla', 'ClCG05G004620' => 'cla', 'ClCG06G006730' => 'cla', 'ClCG06G006740' => 'cla', 'ClCG11G003690' => 'cla', 'COL.COLO4_08276' => 'col', 'COL.COLO4_08277' => 'col', 'COL.COLO4_15787' => 'col', 'COL.COLO4_15789' => 'col', 'Cpa.g.c44815' => 'cpa', 'Cpa.g.sc52.144' => 'cpa', 'Cpa.g.sc58.46' => 'cpa', 'Cpa.g.sc58.47' => 'cpa', 'Cre08.g360900' => 'cre', 'CsaV3_2G013030' => 'csa', 'CsaV3_2G013050' => 'csa', 'CsaV3_2G015620' => 'csa', 'CsaV3_3G012590' => 'csa', 'CsaV3_3G012600' => 'csa', 'CSS0001641' => 'camsi', 'CSS0008310' => 'camsi', 'CSS0013011' => 'camsi', 'CSS0017147' => 'camsi', 'CSS0022970' => 'camsi', 'CSS0025655' => 'camsi', 'CSS0028665' => 'camsi', 'CSS0029117' => 'camsi', 'CSS0032024' => 'camsi', 'CSS0039681' => 'camsi', 'CSS0046516' => 'camsi', 'CSS0050307' => 'camsi', 'DCAR_005871' => 'dca', 'DCAR_007342' => 'dca', 'DCAR_024228' => 'dca', 'DCAR_027277' => 'dca', 'DCAR_030718' => 'dca', 'Dinv20287' => 'din', 'Dinv22461' => 'din', 'Dinv22464' => 'din', 'Dinv29912' => 'din', 'Dinv29913' => 'din', 'Dinv34580' => 'din', 'Dinv34582' => 'din', 'Dinv44632' => 'din', 'Duzib052G0266' => 'dzi', 'Duzib133G0907' => 'dzi', 'Duzib133G1034' => 'dzi', 'Duzib138G0207' => 'dzi', 'Duzib138G0491' => 'dzi', 'Duzib151G0812' => 'dzi', 'Duzib151G1166' => 'dzi', 'Duzib168G0192' => 'dzi', 'Duzib211G0077' => 'dzi', 'Duzib212G0429' => 'dzi', 'Duzib212G0472' => 'dzi', 'ECA233G2617' => 'eca', 'ECA236G4188' => 'eca', 'ECA240G0936' => 'eca', 'ECA240G1129' => 'eca', 'ECA247G0623' => 'eca', 'EL10Ac5g10451' => 'bvu', 'EL10Ac5g10453' => 'bvu', 'EL10Ac5g10894' => 'bvu', 'Eucgr.H00192' => 'egr', 'Eucgr.H00193' => 'egr', 'Eucgr.H00194' => 'egr', 'Eucgr.J01562' => 'egr', 'Eucgr.K03301' => 'egr', 'FAN02G0632' => 'fan', 'FAN05G5378' => 'fan', 'FAN09G3247' => 'fan', 'FAN12G0435' => 'fan', 'FAN12G2426' => 'fan', 'FAN14G1707' => 'fan', 'FAN14G4725' => 'fan', 'FAN15G2071' => 'fan', 'FAN17G3065' => 'fan', 'FAN19G1376' => 'fan', 'FAN20G0354' => 'fan', 'FAN20G2429' => 'fan', 'FAN20G2658' => 'fan', 'FAN24G2343' => 'fan', 'FAN27G2362' => 'fan', 'FAN28G1765' => 'fan', 'FvH4_1g16020' => 'fve', 'FvH4_2g04890' => 'fve', 'FvH4_2g22270' => 'fve', 'FvH4_4g02630' => 'fve', 'FvH4_4g02640' => 'fve', 'FvH4_6g02650' => 'fve', 'Glyma.02G140600' => 'gma', 'Glyma.03G159900' => 'gma', 'Glyma.05G234800' => 'gma', 'Glyma.07G269600' => 'gma', 'Glyma.08G042300' => 'gma', 'Glyma.10G033500' => 'gma', 'Glyma.10G185200' => 'gma', 'Glyma.17G004300' => 'gma', 'Glyma.19G161900' => 'gma', 'Glyma.20G205100' => 'gma', 'Glyma.20G205200' => 'gma', 'Gohir.A01G139101' => 'ghi', 'Gohir.A02G035600' => 'ghi', 'Gohir.A02G117901' => 'ghi', 'Gohir.A07G210100' => 'ghi', 'Gohir.A07G210200' => 'ghi', 'Gohir.A08G061100' => 'ghi', 'Gohir.A09G223000' => 'ghi', 'Gohir.A09G223100' => 'ghi', 'Gohir.A10G113900' => 'ghi', 'Gohir.A10G114000' => 'ghi', 'Gohir.D02G042300' => 'ghi', 'Gohir.D07G216100' => 'ghi', 'Gohir.D07G216200' => 'ghi', 'Gohir.D08G070400' => 'ghi', 'Gohir.D09G225000' => 'ghi', 'Gohir.D09G225100' => 'ghi', 'Gohir.D10G152300' => 'ghi', 'Gohir.D10G153200' => 'ghi', 'Gohir.D11G133701' => 'ghi', 'Gorai.004G074100' => 'gra', 'Gorai.005G046800' => 'gra', 'Gorai.006G246500' => 'gra', 'Gorai.006G246600' => 'gra', 'Gorai.007G142900' => 'gra', 'Gorai.011G171000' => 'gra', 'Gorai.011G171100' => 'gra', 'Gorai.013G104300' => 'gra', 'Gorai.013G104400' => 'gra', 'GSVIVG01000754001' => 'vvi', 'GSVIVG01000756001' => 'vvi', 'GSVIVG01010903001' => 'vvi', 'GSVIVG01017623001' => 'vvi', 'GSVIVG01018113001' => 'vvi', 'GSVIVG01018116001' => 'vvi', 'GSVIVG01018118001' => 'vvi', 'HanXRQChr03g0076211' => 'han', 'HanXRQChr03g0092431' => 'han', 'HanXRQChr03g0092441' => 'han', 'HanXRQChr03g0092591' => 'han', 'HanXRQChr03g0092671' => 'han', 'HanXRQChr03g0092681' => 'han', 'HanXRQChr03g0092691' => 'han', 'HanXRQChr03g0092701' => 'han', 'HanXRQChr03g0092721' => 'han', 'HanXRQChr03g0092731' => 'han', 'HanXRQChr04g0113681' => 'han', 'HanXRQChr10g0281371' => 'han', 'HanXRQChr11g0337141' => 'han', 'HanXRQChr13g0424521' => 'han', 'HanXRQChr13g0424531' => 'han', 'HanXRQChr13g0424541' => 'han', 'HanXRQChr16g0498221' => 'han', 'Haze_04377' => 'cav', 'Haze_11298' => 'cav', 'Haze_24547' => 'cav', 'Haze_24550' => 'cav', 'Haze_26587' => 'cav', 'Hma1.2p1_0650F.1_g195410' => 'hma', 'Hma1.2p1_0893F.1_g233470' => 'hma', 'HPP92_006508' => 'vpl', 'HPP92_024780' => 'vpl', 'Hund02688' => 'sun', 'Hund09380' => 'sun', 'Hund09381' => 'sun', 'Hund09832' => 'sun', 'Hund09833' => 'sun', 'Hund11351' => 'sun', 'Hund11513' => 'sun', 'Lalb_Chr06g0162591' => 'lal', 'Lalb_Chr06g0162601' => 'lal', 'Lalb_Chr06g0169321' => 'lal', 'Lalb_Chr09g0330951' => 'lal', 'Lalb_Chr16g0387631' => 'lal', 'Lalb_Chr21g0306241' => 'lal', 'Lalb_Chr25g0290051' => 'lal', 'Lalb_Chr25g0290061' => 'lal', 'Lalb_Chr25g0290071' => 'lal', 'Lj1g0003876' => 'lja', 'Lj1P1207T36' => 'lonja', 'Lj2C1156G12' => 'lonja', 'Lj3A793G39' => 'lonja', 'Lj3C580G2' => 'lonja', 'Lj3C780G2' => 'lonja', 'Lj3C780T4' => 'lonja', 'Lj3C793G9' => 'lonja', 'Lj4g0012960' => 'lja', 'Lj5g0021252' => 'lja', 'Lj5g0021484' => 'lja', 'Lj5g0024528' => 'lja', 'Lj6A399T12' => 'lonja', 'Lj6A656G65' => 'lonja', 'Lsat_1_v5_gn_3_125500' => 'lsa', 'Lsat_1_v5_gn_3_125540' => 'lsa', 'Lsat_1_v5_gn_5_72701' => 'lsa', 'Lsat_1_v5_gn_8_91560' => 'lsa', 'Lsat_1_v5_gn_9_9640' => 'lsa', 'Manes.01G200600' => 'mes', 'Manes.01G200700' => 'mes', 'Manes.03G168900' => 'mes', 'Manes.03G169000' => 'mes', 'Manes.05G085801' => 'mes', 'Manes.05G086200' => 'mes', 'Manes.15G036700' => 'mes', 'Manes.15G036900' => 'mes', 'Mapoly0004s0172' => 'mpo', 'Mapoly0023s0001' => 'mpo', 'Mapoly0142s0012' => 'mpo', 'MBI01_g32854_MAGBIO' => 'mbi', 'MBI11_g24427_MAGBIO' => 'mbi', 'MBI11_g47319_MAGBIO' => 'mbi', 'MCO01G433' => 'mco', 'MD00G1187800' => 'mdo', 'MD04G1226500' => 'mdo', 'MD05G1203900' => 'mdo', 'MD10G1191100' => 'mdo', 'MD12G1243500' => 'mdo', 'MD13G1207000' => 'mdo', 'MD13G1207100' => 'mdo', 'MD16G1208600' => 'mdo', 'Medtr1g050352' => 'mtr', 'Medtr1g070385' => 'mtr', 'Medtr1g070450' => 'mtr', 'Medtr1g075200' => 'mtr', 'Medtr1g075250' => 'mtr', 'Medtr1g075260' => 'mtr', 'Medtr1g475250' => 'mtr', 'Medtr4g075450' => 'mtr', 'Medtr7g096300' => 'mtr', 'Medtr8g105110' => 'mtr', 'MELO3C006470.2' => 'cme', 'MELO3C006471.2' => 'cme', 'MELO3C020772.2' => 'cme', 'MELO3C026780.2' => 'cme', 'MELO3C026781.2' => 'cme', 'Migut.D00390' => 'egut', 'Migut.G00435' => 'egut', 'Migut.G00436' => 'egut', 'Migut.G00718' => 'egut', 'MSTRG.21891' => 'ama', 'MSTRG.26910' => 'ama', 'MSTRG.4099' => 'ama', 'MSTRG.9925' => 'ama', 'Nitab4.5_0000165g0010' => 'nta', 'Nitab4.5_0000209g0180' => 'nta', 'Nitab4.5_0000244g0440' => 'nta', 'Nitab4.5_0000525g0220' => 'nta', 'Nitab4.5_0001597g0020' => 'nta', 'Nitab4.5_0001878g0040' => 'nta', 'Nitab4.5_0001878g0060' => 'nta', 'Nitab4.5_0002838g0100' => 'nta', 'Nitab4.5_0002838g0120' => 'nta', 'Nitab4.5_0004798g0030' => 'nta', 'Nitab4.5_0005420g0010' => 'nta', 'Nitab4.5_0005507g0010' => 'nta', 'Nitab4.5_0005574g0020' => 'nta', 'Nitab4.5_0005838g0010' => 'nta', 'Nitab4.5_0010580g0020' => 'nta', 'Nn1g02599' => 'nnu', 'Nn1g02608' => 'nnu', 'Nn3g17742' => 'nnu', 'Nn3g19534' => 'nnu', 'Nn3g19535' => 'nnu', 'Oeu008790.1' => 'oeu', 'Oeu008792.1' => 'oeu', 'Oeu032590.1' => 'oeu', 'Oeu035349.1' => 'oeu', 'Oeu049791.1' => 'oeu', 'Os01g0774500' => 'osa', 'Os03g0628800' => 'osa', 'Os03g0798600' => 'osa', 'Os05g0508800' => 'osa', 'Peaxi162Scf00036g02018' => 'pax', 'Peaxi162Scf00578g00032' => 'pax', 'Peaxi162Scf00578g00317' => 'pax', 'Peaxi162Scf00785g00114' => 'pax', 'Peaxi162Scf00813g00119' => 'pax', 'Peaxi162Scf00906g00227' => 'pax', 'PGR004G0875' => 'pgr', 'PGR004G2424' => 'pgr', 'PGR031G1239' => 'pgr', 'PGR031G2474' => 'pgr', 'PGR044G0423' => 'pgr', 'PGSC0003DMG400001128' => 'stu', 'PGSC0003DMG400007336' => 'stu', 'PGSC0003DMG400016318' => 'stu', 'PGSC0003DMG400016319' => 'stu', 'PGSC0003DMG400018074' => 'stu', 'Phvul.001G157700' => 'pvu', 'Phvul.002G148550' => 'pvu', 'Phvul.002G320200' => 'pvu', 'Phvul.003G089200' => 'pvu', 'Phvul.007G126000' => 'pvu', 'Phvul.007G126100' => 'pvu', 'Phvul.007G178000' => 'pvu', 'Phvul.007G178200' => 'pvu', 'Potri.002G043000' => 'ptr', 'Potri.002G043200' => 'ptr', 'Potri.003G123750' => 'ptr', 'Potri.005G055401' => 'ptr', 'Potri.005G219700' => 'ptr', 'Potri.005G220000' => 'ptr', 'Potri.008G161901' => 'ptr', 'Potri.008G162000' => 'ptr', 'Potri.008G162400' => 'ptr', 'Potri.010G076900' => 'ptr', 'Pp3c12_9180' => 'ppa', 'Pp3c13_19770' => 'ppa', 'Pp3c14_22950' => 'ppa', 'Pp3c16_12160' => 'ppa', 'Pp3c27_7820' => 'ppa', 'Pp3c2_3490' => 'ppa', 'Pp3c3_23700' => 'ppa', 'Pp3c3_36520' => 'ppa', 'Pp3c4_15250' => 'ppa', 'PRCOL_00007002' => 'pco', 'Prupe.1G030600' => 'ppe', 'Prupe.1G030700' => 'ppe', 'Prupe.6G345200' => 'ppe', 'Prupe.8G230300' => 'ppe', 'Prupe.8G230500' => 'ppe', 'Psat3g059600' => 'psa', 'Psat5g200920' => 'psa', 'Psat6g056440' => 'psa', 'Psat6g057360' => 'psa', 'Psat6g134120' => 'psa', 'Psat6g134160' => 'psa', 'Psat7g008640' => 'psa', 'Psat7g185240' => 'psa', 'PSO017G1330' => 'pso', 'PSO063G6097' => 'pso', 'PSO170G0835' => 'pso', 'PSO170G2499' => 'pso', 'PSO210G5058' => 'pso', 'PSO210G6154' => 'pso', 'PSO585G0031' => 'pso', 'PSO832G0264' => 'pso', 'PSO832G4288' => 'pso', 'QL03p027355' => 'qlo', 'QL03p027430' => 'qlo', 'QL04p081380' => 'qlo', 'QL06p015642' => 'qlo', 'QL06p015650' => 'qlo', 'QL06p015686' => 'qlo', 'QL12p042927' => 'qlo', 'QL93p1863_0035' => 'qlo', 'RcHm_v2.0_Chr3g0450581' => 'rch', 'RcHm_v2.0_Chr4g0390371' => 'rch', 'RcHm_v2.0_Chr4g0390381' => 'rch', 'RcHm_v2.0_Chr4g0390491' => 'rch', 'RcHm_v2.0_Chr4g0390501' => 'rch', 'RcHm_v2.0_Chr6g0289231' => 'rch', 'Rhsim04G0190400' => 'rsi', 'Rhsim04G0190500' => 'rsi', 'Rhsim04G0190600' => 'rsi', 'Rhsim13G0031400' => 'rsi', 'Rhsim13G0165600' => 'rsi', 'RhsimUnG0114600' => 'rsi', 'RhsimUnG0114700' => 'rsi', 'Sabra02G0034800' => 'sbr', 'Sabra02G0035100' => 'sbr', 'Sabra05G0168600' => 'sbr', 'Sabra05G0168800' => 'sbr', 'Sabra08G0123700' => 'sbr', 'Sabra10G0031900' => 'sbr', 'Sabra13G0039000' => 'sbr', 'SalBow2G0782' => 'sbo', 'SalBow2G1403' => 'sbo', 'SalBow4G0074' => 'sbo', 'SalBow4G2635' => 'sbo', 'SalBow5G3010' => 'sbo', 'Sc05g0000870' => 'sci', 'Sc05g0000890' => 'sci', 'Sc13g0005000' => 'sci', 'Sc13g0005030' => 'sci', 'Sc19g0003790' => 'sci', 'Sc19g0003800' => 'sci', 'Sed0003467' => 'sed', 'Sed0009355' => 'sed', 'Sed0009894' => 'sed', 'Sed0011972' => 'sed', 'Sed0021483' => 'sed', 'Sed0021750' => 'sed', 'Sed0026279' => 'sed', 'SEGI_05312' => 'sgi', 'SEGI_10112' => 'sgi', 'SEGI_15835' => 'sgi', 'SEGI_30386' => 'sgi', 'SEGI_34122' => 'sgi', 'SEGI_35063' => 'sgi', 'SGA_v2.0_scaffold101G29794' => 'sas', 'SGA_v2.0_scaffold1G00573' => 'sas', 'SGA_v2.0_scaffold79G25637' => 'sas', 'SGA_v2.0_scaffold88G27283' => 'sas', 'SGA_v2.0_scaffold88G27285' => 'sas', 'SGA_v2.0_scaffold88G27331' => 'sas', 'SHI09937' => 'shi', 'SMO119G0302' => 'smo', 'SMO137G0231' => 'smo', 'SMO367G1151' => 'smo', 'Solyc02g082000.3' => 'sly', 'Solyc06g031670.3' => 'sly', 'Solyc06g053810.3' => 'sly', 'Solyc07g025457.1' => 'sly', 'Solyc08g059740.1' => 'sly', 'Solyc08g059750.3' => 'sly', 'Solyc09g083370.3' => 'sly', 'Solyc12g038950.3' => 'sly', 'Sopen02g026630' => 'spe', 'Sopen06g018930' => 'spe', 'Sopen06g018940' => 'spe', 'Sopen08g009460' => 'spe', 'Sopen09g032290' => 'spe', 'Sp1g03080' => 'spa', 'Sp1g03090' => 'spa', 'Sp1g05480' => 'spa', 'Sp2g07860' => 'spa', 'Sp2g08430' => 'spa', 'Sp2g08440' => 'spa', 'Sp2g26200' => 'spa', 'Sp4g13170' => 'spa', 'Sp6g33840' => 'spa', 'SpUn1204_0010' => 'spa', 'TAR365G0908' => 'tar', 'TAR381G1270' => 'tar', 'TAR381G1651' => 'tar', 'TAR625G1131' => 'tar', 'TAR633G0962' => 'tar', 'TAR633G1729' => 'tar', 'TAR633G1864' => 'tar', 'TAR636G0221' => 'tar', 'TAR636G0314' => 'tar', 'TAR636G3202' => 'tar', 'THA.LOC104800805' => 'tha', 'THA.LOC104801096' => 'tha', 'THA.LOC104801555' => 'tha', 'THA.LOC104808491' => 'tha', 'THA.LOC104808595' => 'tha', 'THA.LOC104815985' => 'tha', 'THA.LOC104822250' => 'tha', 'THA.LOC104826071' => 'tha', 'Thecc.01G265200' => 'tca', 'Thecc.01G265300' => 'tca', 'Thecc.01G265700' => 'tca', 'Thecc.03G109100' => 'tca', 'Thecc.04G245900' => 'tca', 'Thecc.04G246000' => 'tca', 'Thhalv10003334m.g' => 'esa', 'Thhalv10005508m.g' => 'esa', 'Thhalv10005643m.g' => 'esa', 'Thhalv10007316m.g' => 'esa', 'Thhalv10009006m.g' => 'esa', 'Thhalv10009309m.g' => 'esa', 'Thhalv10014917m.g' => 'esa', 'Thhalv10014919m.g' => 'esa', 'Thhalv10015393m.g' => 'esa', 'Thhalv10016515m.g' => 'esa', 'Thhalv10029242m.g' => 'esa', 'TPR.G16654' => 'tpr', 'TPR.G20589' => 'tpr', 'TPR.G23029' => 'tpr', 'TPR.G27731' => 'tpr', 'TPR.G28889' => 'tpr', 'TPR.G28899' => 'tpr', 'TPR.G30846' => 'tpr', 'TPR.G5452' => 'tpr', 'TPR.G5713' => 'tpr', 'TPR.G9046' => 'tpr', 'TPR.G9061' => 'tpr', 'TWI09G1075' => 'twi', 'TWI12G0806' => 'twi', 'TWI18G0108' => 'twi', 'TWI53G1361' => 'twi', 'TWI73G0185' => 'twi', 'TWI73G0427' => 'twi', 'unitig_37.g12001' => 'ugi', 'unitig_747.g21660' => 'ugi', 'unitig_748.g7232' => 'ugi', 'unitig_748.g7315' => 'ugi', 'unitig_85.g27262' => 'ugi', 'unitig_92.g28220' => 'ugi', 'vmacro02632' => 'vma', 'vmacro08410' => 'vma', 'vmacro08411' => 'vma', 'vmacro15407' => 'vma', 'VMungo0251G3619' => 'vmu', 'VMungo0720G1204' => 'vmu', 'VMungo0720G1918' => 'vmu', 'VMungo0720G2387' => 'vmu', 'VMungo0720G2961' => 'vmu', 'VMungo1215G2154' => 'vmu', 'VMungo1383G2411' => 'vmu', 'Zm00001eb051130' => 'zma', 'Zm00001eb116830' => 'zma', 'Zm00001eb116850' => 'zma', 'Zm00001eb151740' => 'zma', 'Zm00001eb292360' => 'zma', 'Zm00001eb301640' => 'zma' ) $gf_id = 'HOM05D000856' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000856' ) $data_identifier = 'HOM05D000856' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 13, 'ath' => (int) 10, 'atr' => (int) 1, 'acertr' => (int) 8, 'cqu' => (int) 6, 'bca' => (int) 21, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 11, 'car' => (int) 9, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 8, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 5, 'fan' => (int) 16, 'fve' => (int) 6, 'gma' => (int) 11, 'ghi' => (int) 19, 'gra' => (int) 9, 'vvi' => (int) 7, 'han' => (int) 17, 'cav' => (int) 5, 'hma' => (int) 2, 'vpl' => (int) 2, 'sun' => (int) 7, 'lal' => (int) 9, 'lja' => (int) 5, 'lonja' => (int) 9, 'lsa' => (int) 5, 'mes' => (int) 8, 'mpo' => (int) 3, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 10, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 15, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 9, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 9, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 6, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 5, 'spa' => (int) 10, 'tar' => (int) 10, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 11, 'tpr' => (int) 11, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 4, 'vmu' => (int) 7, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb301640' $species_info = array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ) $local_species = 'stu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000856', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p00010' => 'bna', 'A03p04160' => 'bna', 'A03p17160' => 'bna', 'A04p23370' => 'bna', 'A05p14860' => 'bna', 'A08p37020' => 'bna', 'A09p08050' => 'bna', 'A09p66800' => 'bna', 'A09p67940' => 'bna', 'A10p02680' => 'bna', 'A10p05320' => 'bna', 'Aa31LG1G20560' => 'aar', 'Aa31LG1G20610' => 'aar', 'Aa31LG1G7810' => 'aar', 'Aa31LG5G3590' => 'aar', 'Aa31LG5G6140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3819' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4683' => 'aag', 'Actinidia04480' => 'ach', 'Actinidia05466' => 'ach', 'Actinidia08445' => 'ach', 'Actinidia21170' => 'ach', 'Actinidia24812' => 'ach', 'Actinidia24951' => 'ach', 'Actinidia40088' => 'ach', 'Ah.02g111660' => 'amhyb', 'Ah.11g048900' => 'amhyb', 'Ah.11g049910' => 'amhyb', 'AL1G13870' => 'aly', 'AL1G13880' => 'aly', 'AL1G16760' => 'aly', 'AL390U10020' => 'aly', 'AL4G25520' => 'aly', 'AL6G19890' => 'aly', 'AL6G19900' => 'aly', 'AL6G19910' => 'aly', 'AL8G40100' => 'aly', 'Aqoxy2G03562' => 'aox', 'Aqoxy5G00316' => 'aox', 'Aqoxy5G00926' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1628KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1H403S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2FU6SJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.882I6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8YRY2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YN1SN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AF70II' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZA8L1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F916KL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHRD8H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KTZ8QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S22EMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8M29T' => 'arhy', 'AT1G04270' => 'ath', 'AT1G04280' => 'ath', 'AT1G06750' => 'ath', 'AT1G33850' => 'ath', 'AT2G30630' => 'ath', 'AT5G09490' => 'ath', 'AT5G09500' => 'ath', 'AT5G09510' => 'ath', 'AT5G43640' => 'ath', 'AT5G63070' => 'ath', 'ATR0605G315' => 'atr', 'Atru.chr11.175' => 'acertr', 'Atru.chr11.653' => 'acertr', 'Atru.chr3.1616' => 'acertr', 'Atru.chr4.2230' => 'acertr', 'Atru.chr4.2232' => 'acertr', 'Atru.chr5.1598' => 'acertr', 'Atru.chr5.1600' => 'acertr', 'Atru.chr5.2188' => 'acertr', 'AUR62008326' => 'cqu', 'AUR62011922' => 'cqu', 'AUR62011924' => 'cqu', 'AUR62021771' => 'cqu', 'AUR62032237' => 'cqu', 'AUR62032240' => 'cqu', 'BcaB01g05572' => 'bca', 'BcaB02g10337' => 'bca', 'BcaB04g19944' => 'bca', 'BcaB05g21548' => 'bca', 'BcaB05g21549' => 'bca', 'BcaB05g23227' => 'bca', 'BcaB06g26256' => 'bca', 'BcaB06g26257' => 'bca', 'BcaB06g28379' => 'bca', 'BcaC02g11159' => 'bca', 'BcaC03g13258' => 'bca', 'BcaC03g13259' => 'bca', 'BcaC05g24456' => 'bca', 'BcaC05g24457' => 'bca', 'BcaC07g36922' => 'bca', 'BcaC07g36923' => 'bca', 'BcaC07g42050' => 'bca', 'BcaC07g42176' => 'bca', 'BcaC07g42195' => 'bca', 'BcaC07g42196' => 'bca', 'BcaNung06674' => 'bca', 'BolC2t06351H' => 'bol', 'BolC2t06352H' => 'bol', 'BolC3t12993H' => 'bol', 'BolC4t23525H' => 'bol', 'BolC4t27475H' => 'bol', 'BolC5t29025H' => 'bol', 'BolC5t29026H' => 'bol', 'BolC8t46898H' => 'bol', 'BolC8t46899H' => 'bol', 'BolC8t52630H' => 'bol', 'BolC8t52765H' => 'bol', 'BolC9t53824H' => 'bol', 'BraA03t09760Z' => 'bra', 'BraA03t10990Z' => 'bra', 'BraA05t20413Z' => 'bra', 'BraA08t35602Z' => 'bra', 'BraA09t36458Z' => 'bra', 'BraA09t42018Z' => 'bra', 'BraA09t42129Z' => 'bra', 'BraA10t42536Z' => 'bra', 'BraA10t42537Z' => 'bra', 'C01p10690' => 'bna', 'C02p03890' => 'bna', 'C02p03900' => 'bna', 'C03p04620' => 'bna', 'C04p19870' => 'bna', 'C04p59670' => 'bna', 'C05p02460' => 'bna', 'C05p02470' => 'bna', 'C08p00980' => 'bna', 'C08p00990' => 'bna', 'C08p51030' => 'bna', 'C08p52360' => 'bna', 'C09p09120' => 'bna', 'CAN.G19.15' => 'can', 'CAN.G251.10' => 'can', 'CAN.G251.9' => 'can', 'CAN.G398.24' => 'can', 'CAN.G410.32' => 'can', 'CAN.G881.2' => 'can', 'CANSAT01G3025' => 'cansat', 'CANSAT78G1211' => 'cansat', 'CANSAT78G1218' => 'cansat', 'CANSAT78G1521' => 'cansat', 'CANSAT78G1670' => 'cansat', 'CARHR003600' => 'chi', 'CARHR003610' => 'chi', 'CARHR006290' => 'chi', 'CARHR006430' => 'chi', 'CARHR124110' => 'chi', 'CARHR203870' => 'chi', 'CARHR203880' => 'chi', 'CARHR203890' => 'chi', 'CARHR276880' => 'chi', 'Carub.0001s0346' => 'cru', 'Carub.0001s0347' => 'cru', 'Carub.0001s0607' => 'cru', 'Carub.0003s2768' => 'cru', 'Carub.0003s2769' => 'cru', 'Carub.0004s1178' => 'cru', 'Carub.0006s0806' => 'cru', 'Carub.0006s0807' => 'cru', 'Carub.0006s0808' => 'cru', 'Carub.0008s0501' => 'cru', 'Carub.0008s2379' => 'cru', 'Ca_08655_v3' => 'car', 'Ca_08922_v3' => 'car', 'Ca_08923_v3' => 'car', 'Ca_09119_v3' => 'car', 'Ca_09703_v3' => 'car', 'Ca_09705_v3' => 'car', 'Ca_09835_v3' => 'car', 'Ca_26403_v3' => 'car', 'Ca_30719_v3' => 'car', 'CBR_g17958' => 'cbr', 'CBR_g40516' => 'cbr', 'Cc00_g05350' => 'ccan', 'Cc01_g18690' => 'ccan', 'Cc03_g04830' => 'ccan', 'Cc03_g04850' => 'ccan', 'CDE02G4469' => 'cde', 'CDE06G0883' => 'cde', 'CDE06G1295' => 'cde', 'CDE06G1390' => 'cde', 'CDE07G0584' => 'cde', 'CDE07G1084' => 'cde', 'CDE08G1259' => 'cde', 'Cfa002341' => 'cfa', 'Cfa024337' => 'cfa', 'Ciclev10004749m.g' => 'ccl', 'Ciclev10006127m.g' => 'ccl', 'Ciclev10019720m.g' => 'ccl', 'Ciclev10022652m.g' => 'ccl', 'CiPaw.01G190400' => 'cil', 'CiPaw.01G190500' => 'cil', 'CiPaw.02G116400' => 'cil', 'CiPaw.02G116500' => 'cil', 'CiPaw.04G183000' => 'cil', 'CiPaw.04G183300' => 'cil', 'ClCG05G004610' => 'cla', 'ClCG05G004620' => 'cla', 'ClCG06G006730' => 'cla', 'ClCG06G006740' => 'cla', 'ClCG11G003690' => 'cla', 'COL.COLO4_08276' => 'col', 'COL.COLO4_08277' => 'col', 'COL.COLO4_15787' => 'col', 'COL.COLO4_15789' => 'col', 'Cpa.g.c44815' => 'cpa', 'Cpa.g.sc52.144' => 'cpa', 'Cpa.g.sc58.46' => 'cpa', 'Cpa.g.sc58.47' => 'cpa', 'Cre08.g360900' => 'cre', 'CsaV3_2G013030' => 'csa', 'CsaV3_2G013050' => 'csa', 'CsaV3_2G015620' => 'csa', 'CsaV3_3G012590' => 'csa', 'CsaV3_3G012600' => 'csa', 'CSS0001641' => 'camsi', 'CSS0008310' => 'camsi', 'CSS0013011' => 'camsi', 'CSS0017147' => 'camsi', 'CSS0022970' => 'camsi', 'CSS0025655' => 'camsi', 'CSS0028665' => 'camsi', 'CSS0029117' => 'camsi', 'CSS0032024' => 'camsi', 'CSS0039681' => 'camsi', 'CSS0046516' => 'camsi', 'CSS0050307' => 'camsi', 'DCAR_005871' => 'dca', 'DCAR_007342' => 'dca', 'DCAR_024228' => 'dca', 'DCAR_027277' => 'dca', 'DCAR_030718' => 'dca', 'Dinv20287' => 'din', 'Dinv22461' => 'din', 'Dinv22464' => 'din', 'Dinv29912' => 'din', 'Dinv29913' => 'din', 'Dinv34580' => 'din', 'Dinv34582' => 'din', 'Dinv44632' => 'din', 'Duzib052G0266' => 'dzi', 'Duzib133G0907' => 'dzi', 'Duzib133G1034' => 'dzi', 'Duzib138G0207' => 'dzi', 'Duzib138G0491' => 'dzi', 'Duzib151G0812' => 'dzi', 'Duzib151G1166' => 'dzi', 'Duzib168G0192' => 'dzi', 'Duzib211G0077' => 'dzi', 'Duzib212G0429' => 'dzi', 'Duzib212G0472' => 'dzi', 'ECA233G2617' => 'eca', 'ECA236G4188' => 'eca', 'ECA240G0936' => 'eca', 'ECA240G1129' => 'eca', 'ECA247G0623' => 'eca', 'EL10Ac5g10451' => 'bvu', 'EL10Ac5g10453' => 'bvu', 'EL10Ac5g10894' => 'bvu', 'Eucgr.H00192' => 'egr', 'Eucgr.H00193' => 'egr', 'Eucgr.H00194' => 'egr', 'Eucgr.J01562' => 'egr', 'Eucgr.K03301' => 'egr', 'FAN02G0632' => 'fan', 'FAN05G5378' => 'fan', 'FAN09G3247' => 'fan', 'FAN12G0435' => 'fan', 'FAN12G2426' => 'fan', 'FAN14G1707' => 'fan', 'FAN14G4725' => 'fan', 'FAN15G2071' => 'fan', 'FAN17G3065' => 'fan', 'FAN19G1376' => 'fan', 'FAN20G0354' => 'fan', 'FAN20G2429' => 'fan', 'FAN20G2658' => 'fan', 'FAN24G2343' => 'fan', 'FAN27G2362' => 'fan', 'FAN28G1765' => 'fan', 'FvH4_1g16020' => 'fve', 'FvH4_2g04890' => 'fve', 'FvH4_2g22270' => 'fve', 'FvH4_4g02630' => 'fve', 'FvH4_4g02640' => 'fve', 'FvH4_6g02650' => 'fve', 'Glyma.02G140600' => 'gma', 'Glyma.03G159900' => 'gma', 'Glyma.05G234800' => 'gma', 'Glyma.07G269600' => 'gma', 'Glyma.08G042300' => 'gma', 'Glyma.10G033500' => 'gma', 'Glyma.10G185200' => 'gma', 'Glyma.17G004300' => 'gma', 'Glyma.19G161900' => 'gma', 'Glyma.20G205100' => 'gma', 'Glyma.20G205200' => 'gma', 'Gohir.A01G139101' => 'ghi', 'Gohir.A02G035600' => 'ghi', 'Gohir.A02G117901' => 'ghi', 'Gohir.A07G210100' => 'ghi', 'Gohir.A07G210200' => 'ghi', 'Gohir.A08G061100' => 'ghi', 'Gohir.A09G223000' => 'ghi', 'Gohir.A09G223100' => 'ghi', 'Gohir.A10G113900' => 'ghi', 'Gohir.A10G114000' => 'ghi', 'Gohir.D02G042300' => 'ghi', 'Gohir.D07G216100' => 'ghi', 'Gohir.D07G216200' => 'ghi', 'Gohir.D08G070400' => 'ghi', 'Gohir.D09G225000' => 'ghi', 'Gohir.D09G225100' => 'ghi', 'Gohir.D10G152300' => 'ghi', 'Gohir.D10G153200' => 'ghi', 'Gohir.D11G133701' => 'ghi', 'Gorai.004G074100' => 'gra', 'Gorai.005G046800' => 'gra', 'Gorai.006G246500' => 'gra', 'Gorai.006G246600' => 'gra', 'Gorai.007G142900' => 'gra', 'Gorai.011G171000' => 'gra', 'Gorai.011G171100' => 'gra', 'Gorai.013G104300' => 'gra', 'Gorai.013G104400' => 'gra', 'GSVIVG01000754001' => 'vvi', 'GSVIVG01000756001' => 'vvi', 'GSVIVG01010903001' => 'vvi', 'GSVIVG01017623001' => 'vvi', 'GSVIVG01018113001' => 'vvi', 'GSVIVG01018116001' => 'vvi', 'GSVIVG01018118001' => 'vvi', 'HanXRQChr03g0076211' => 'han', 'HanXRQChr03g0092431' => 'han', 'HanXRQChr03g0092441' => 'han', 'HanXRQChr03g0092591' => 'han', 'HanXRQChr03g0092671' => 'han', 'HanXRQChr03g0092681' => 'han', 'HanXRQChr03g0092691' => 'han', 'HanXRQChr03g0092701' => 'han', 'HanXRQChr03g0092721' => 'han', 'HanXRQChr03g0092731' => 'han', 'HanXRQChr04g0113681' => 'han', 'HanXRQChr10g0281371' => 'han', 'HanXRQChr11g0337141' => 'han', 'HanXRQChr13g0424521' => 'han', 'HanXRQChr13g0424531' => 'han', 'HanXRQChr13g0424541' => 'han', 'HanXRQChr16g0498221' => 'han', 'Haze_04377' => 'cav', 'Haze_11298' => 'cav', 'Haze_24547' => 'cav', 'Haze_24550' => 'cav', 'Haze_26587' => 'cav', 'Hma1.2p1_0650F.1_g195410' => 'hma', 'Hma1.2p1_0893F.1_g233470' => 'hma', 'HPP92_006508' => 'vpl', 'HPP92_024780' => 'vpl', 'Hund02688' => 'sun', 'Hund09380' => 'sun', 'Hund09381' => 'sun', 'Hund09832' => 'sun', 'Hund09833' => 'sun', 'Hund11351' => 'sun', 'Hund11513' => 'sun', 'Lalb_Chr06g0162591' => 'lal', 'Lalb_Chr06g0162601' => 'lal', 'Lalb_Chr06g0169321' => 'lal', 'Lalb_Chr09g0330951' => 'lal', 'Lalb_Chr16g0387631' => 'lal', 'Lalb_Chr21g0306241' => 'lal', 'Lalb_Chr25g0290051' => 'lal', 'Lalb_Chr25g0290061' => 'lal', 'Lalb_Chr25g0290071' => 'lal', 'Lj1g0003876' => 'lja', 'Lj1P1207T36' => 'lonja', 'Lj2C1156G12' => 'lonja', 'Lj3A793G39' => 'lonja', 'Lj3C580G2' => 'lonja', 'Lj3C780G2' => 'lonja', 'Lj3C780T4' => 'lonja', 'Lj3C793G9' => 'lonja', 'Lj4g0012960' => 'lja', 'Lj5g0021252' => 'lja', 'Lj5g0021484' => 'lja', 'Lj5g0024528' => 'lja', 'Lj6A399T12' => 'lonja', 'Lj6A656G65' => 'lonja', 'Lsat_1_v5_gn_3_125500' => 'lsa', 'Lsat_1_v5_gn_3_125540' => 'lsa', 'Lsat_1_v5_gn_5_72701' => 'lsa', 'Lsat_1_v5_gn_8_91560' => 'lsa', 'Lsat_1_v5_gn_9_9640' => 'lsa', 'Manes.01G200600' => 'mes', 'Manes.01G200700' => 'mes', 'Manes.03G168900' => 'mes', 'Manes.03G169000' => 'mes', 'Manes.05G085801' => 'mes', 'Manes.05G086200' => 'mes', 'Manes.15G036700' => 'mes', 'Manes.15G036900' => 'mes', 'Mapoly0004s0172' => 'mpo', 'Mapoly0023s0001' => 'mpo', 'Mapoly0142s0012' => 'mpo', 'MBI01_g32854_MAGBIO' => 'mbi', 'MBI11_g24427_MAGBIO' => 'mbi', 'MBI11_g47319_MAGBIO' => 'mbi', 'MCO01G433' => 'mco', 'MD00G1187800' => 'mdo', 'MD04G1226500' => 'mdo', 'MD05G1203900' => 'mdo', 'MD10G1191100' => 'mdo', 'MD12G1243500' => 'mdo', 'MD13G1207000' => 'mdo', 'MD13G1207100' => 'mdo', 'MD16G1208600' => 'mdo', 'Medtr1g050352' => 'mtr', 'Medtr1g070385' => 'mtr', 'Medtr1g070450' => 'mtr', 'Medtr1g075200' => 'mtr', 'Medtr1g075250' => 'mtr', 'Medtr1g075260' => 'mtr', 'Medtr1g475250' => 'mtr', 'Medtr4g075450' => 'mtr', 'Medtr7g096300' => 'mtr', 'Medtr8g105110' => 'mtr', 'MELO3C006470.2' => 'cme', 'MELO3C006471.2' => 'cme', 'MELO3C020772.2' => 'cme', 'MELO3C026780.2' => 'cme', 'MELO3C026781.2' => 'cme', 'Migut.D00390' => 'egut', 'Migut.G00435' => 'egut', 'Migut.G00436' => 'egut', 'Migut.G00718' => 'egut', 'MSTRG.21891' => 'ama', 'MSTRG.26910' => 'ama', 'MSTRG.4099' => 'ama', 'MSTRG.9925' => 'ama', 'Nitab4.5_0000165g0010' => 'nta', 'Nitab4.5_0000209g0180' => 'nta', 'Nitab4.5_0000244g0440' => 'nta', 'Nitab4.5_0000525g0220' => 'nta', 'Nitab4.5_0001597g0020' => 'nta', 'Nitab4.5_0001878g0040' => 'nta', 'Nitab4.5_0001878g0060' => 'nta', 'Nitab4.5_0002838g0100' => 'nta', 'Nitab4.5_0002838g0120' => 'nta', 'Nitab4.5_0004798g0030' => 'nta', 'Nitab4.5_0005420g0010' => 'nta', 'Nitab4.5_0005507g0010' => 'nta', 'Nitab4.5_0005574g0020' => 'nta', 'Nitab4.5_0005838g0010' => 'nta', 'Nitab4.5_0010580g0020' => 'nta', 'Nn1g02599' => 'nnu', 'Nn1g02608' => 'nnu', 'Nn3g17742' => 'nnu', 'Nn3g19534' => 'nnu', 'Nn3g19535' => 'nnu', 'Oeu008790.1' => 'oeu', 'Oeu008792.1' => 'oeu', 'Oeu032590.1' => 'oeu', 'Oeu035349.1' => 'oeu', 'Oeu049791.1' => 'oeu', 'Os01g0774500' => 'osa', 'Os03g0628800' => 'osa', 'Os03g0798600' => 'osa', 'Os05g0508800' => 'osa', 'Peaxi162Scf00036g02018' => 'pax', 'Peaxi162Scf00578g00032' => 'pax', 'Peaxi162Scf00578g00317' => 'pax', 'Peaxi162Scf00785g00114' => 'pax', 'Peaxi162Scf00813g00119' => 'pax', 'Peaxi162Scf00906g00227' => 'pax', 'PGR004G0875' => 'pgr', 'PGR004G2424' => 'pgr', 'PGR031G1239' => 'pgr', 'PGR031G2474' => 'pgr', 'PGR044G0423' => 'pgr', 'PGSC0003DMG400001128' => 'stu', 'PGSC0003DMG400007336' => 'stu', 'PGSC0003DMG400016318' => 'stu', 'PGSC0003DMG400016319' => 'stu', 'PGSC0003DMG400018074' => 'stu', 'Phvul.001G157700' => 'pvu', 'Phvul.002G148550' => 'pvu', 'Phvul.002G320200' => 'pvu', 'Phvul.003G089200' => 'pvu', 'Phvul.007G126000' => 'pvu', 'Phvul.007G126100' => 'pvu', 'Phvul.007G178000' => 'pvu', 'Phvul.007G178200' => 'pvu', 'Potri.002G043000' => 'ptr', 'Potri.002G043200' => 'ptr', 'Potri.003G123750' => 'ptr', 'Potri.005G055401' => 'ptr', 'Potri.005G219700' => 'ptr', 'Potri.005G220000' => 'ptr', 'Potri.008G161901' => 'ptr', 'Potri.008G162000' => 'ptr', 'Potri.008G162400' => 'ptr', 'Potri.010G076900' => 'ptr', 'Pp3c12_9180' => 'ppa', 'Pp3c13_19770' => 'ppa', 'Pp3c14_22950' => 'ppa', 'Pp3c16_12160' => 'ppa', 'Pp3c27_7820' => 'ppa', 'Pp3c2_3490' => 'ppa', 'Pp3c3_23700' => 'ppa', 'Pp3c3_36520' => 'ppa', 'Pp3c4_15250' => 'ppa', 'PRCOL_00007002' => 'pco', 'Prupe.1G030600' => 'ppe', 'Prupe.1G030700' => 'ppe', 'Prupe.6G345200' => 'ppe', 'Prupe.8G230300' => 'ppe', 'Prupe.8G230500' => 'ppe', 'Psat3g059600' => 'psa', 'Psat5g200920' => 'psa', 'Psat6g056440' => 'psa', 'Psat6g057360' => 'psa', 'Psat6g134120' => 'psa', 'Psat6g134160' => 'psa', 'Psat7g008640' => 'psa', 'Psat7g185240' => 'psa', 'PSO017G1330' => 'pso', 'PSO063G6097' => 'pso', 'PSO170G0835' => 'pso', 'PSO170G2499' => 'pso', 'PSO210G5058' => 'pso', 'PSO210G6154' => 'pso', 'PSO585G0031' => 'pso', 'PSO832G0264' => 'pso', 'PSO832G4288' => 'pso', 'QL03p027355' => 'qlo', 'QL03p027430' => 'qlo', 'QL04p081380' => 'qlo', 'QL06p015642' => 'qlo', 'QL06p015650' => 'qlo', 'QL06p015686' => 'qlo', 'QL12p042927' => 'qlo', 'QL93p1863_0035' => 'qlo', 'RcHm_v2.0_Chr3g0450581' => 'rch', 'RcHm_v2.0_Chr4g0390371' => 'rch', 'RcHm_v2.0_Chr4g0390381' => 'rch', 'RcHm_v2.0_Chr4g0390491' => 'rch', 'RcHm_v2.0_Chr4g0390501' => 'rch', 'RcHm_v2.0_Chr6g0289231' => 'rch', 'Rhsim04G0190400' => 'rsi', 'Rhsim04G0190500' => 'rsi', 'Rhsim04G0190600' => 'rsi', 'Rhsim13G0031400' => 'rsi', 'Rhsim13G0165600' => 'rsi', 'RhsimUnG0114600' => 'rsi', 'RhsimUnG0114700' => 'rsi', 'Sabra02G0034800' => 'sbr', 'Sabra02G0035100' => 'sbr', 'Sabra05G0168600' => 'sbr', 'Sabra05G0168800' => 'sbr', 'Sabra08G0123700' => 'sbr', 'Sabra10G0031900' => 'sbr', 'Sabra13G0039000' => 'sbr', 'SalBow2G0782' => 'sbo', 'SalBow2G1403' => 'sbo', 'SalBow4G0074' => 'sbo', 'SalBow4G2635' => 'sbo', 'SalBow5G3010' => 'sbo', 'Sc05g0000870' => 'sci', 'Sc05g0000890' => 'sci', 'Sc13g0005000' => 'sci', 'Sc13g0005030' => 'sci', 'Sc19g0003790' => 'sci', 'Sc19g0003800' => 'sci', 'Sed0003467' => 'sed', 'Sed0009355' => 'sed', 'Sed0009894' => 'sed', 'Sed0011972' => 'sed', 'Sed0021483' => 'sed', 'Sed0021750' => 'sed', 'Sed0026279' => 'sed', 'SEGI_05312' => 'sgi', 'SEGI_10112' => 'sgi', 'SEGI_15835' => 'sgi', 'SEGI_30386' => 'sgi', 'SEGI_34122' => 'sgi', 'SEGI_35063' => 'sgi', 'SGA_v2.0_scaffold101G29794' => 'sas', 'SGA_v2.0_scaffold1G00573' => 'sas', 'SGA_v2.0_scaffold79G25637' => 'sas', 'SGA_v2.0_scaffold88G27283' => 'sas', 'SGA_v2.0_scaffold88G27285' => 'sas', 'SGA_v2.0_scaffold88G27331' => 'sas', 'SHI09937' => 'shi', 'SMO119G0302' => 'smo', 'SMO137G0231' => 'smo', 'SMO367G1151' => 'smo', 'Solyc02g082000.3' => 'sly', 'Solyc06g031670.3' => 'sly', 'Solyc06g053810.3' => 'sly', 'Solyc07g025457.1' => 'sly', 'Solyc08g059740.1' => 'sly', 'Solyc08g059750.3' => 'sly', 'Solyc09g083370.3' => 'sly', 'Solyc12g038950.3' => 'sly', 'Sopen02g026630' => 'spe', 'Sopen06g018930' => 'spe', 'Sopen06g018940' => 'spe', 'Sopen08g009460' => 'spe', 'Sopen09g032290' => 'spe', 'Sp1g03080' => 'spa', 'Sp1g03090' => 'spa', 'Sp1g05480' => 'spa', 'Sp2g07860' => 'spa', 'Sp2g08430' => 'spa', 'Sp2g08440' => 'spa', 'Sp2g26200' => 'spa', 'Sp4g13170' => 'spa', 'Sp6g33840' => 'spa', 'SpUn1204_0010' => 'spa', 'TAR365G0908' => 'tar', 'TAR381G1270' => 'tar', 'TAR381G1651' => 'tar', 'TAR625G1131' => 'tar', 'TAR633G0962' => 'tar', 'TAR633G1729' => 'tar', 'TAR633G1864' => 'tar', 'TAR636G0221' => 'tar', 'TAR636G0314' => 'tar', 'TAR636G3202' => 'tar', 'THA.LOC104800805' => 'tha', 'THA.LOC104801096' => 'tha', 'THA.LOC104801555' => 'tha', 'THA.LOC104808491' => 'tha', 'THA.LOC104808595' => 'tha', 'THA.LOC104815985' => 'tha', 'THA.LOC104822250' => 'tha', 'THA.LOC104826071' => 'tha', 'Thecc.01G265200' => 'tca', 'Thecc.01G265300' => 'tca', 'Thecc.01G265700' => 'tca', 'Thecc.03G109100' => 'tca', 'Thecc.04G245900' => 'tca', 'Thecc.04G246000' => 'tca', 'Thhalv10003334m.g' => 'esa', 'Thhalv10005508m.g' => 'esa', 'Thhalv10005643m.g' => 'esa', 'Thhalv10007316m.g' => 'esa', 'Thhalv10009006m.g' => 'esa', 'Thhalv10009309m.g' => 'esa', 'Thhalv10014917m.g' => 'esa', 'Thhalv10014919m.g' => 'esa', 'Thhalv10015393m.g' => 'esa', 'Thhalv10016515m.g' => 'esa', 'Thhalv10029242m.g' => 'esa', 'TPR.G16654' => 'tpr', 'TPR.G20589' => 'tpr', 'TPR.G23029' => 'tpr', 'TPR.G27731' => 'tpr', 'TPR.G28889' => 'tpr', 'TPR.G28899' => 'tpr', 'TPR.G30846' => 'tpr', 'TPR.G5452' => 'tpr', 'TPR.G5713' => 'tpr', 'TPR.G9046' => 'tpr', 'TPR.G9061' => 'tpr', 'TWI09G1075' => 'twi', 'TWI12G0806' => 'twi', 'TWI18G0108' => 'twi', 'TWI53G1361' => 'twi', 'TWI73G0185' => 'twi', 'TWI73G0427' => 'twi', 'unitig_37.g12001' => 'ugi', 'unitig_747.g21660' => 'ugi', 'unitig_748.g7232' => 'ugi', 'unitig_748.g7315' => 'ugi', 'unitig_85.g27262' => 'ugi', 'unitig_92.g28220' => 'ugi', 'vmacro02632' => 'vma', 'vmacro08410' => 'vma', 'vmacro08411' => 'vma', 'vmacro15407' => 'vma', 'VMungo0251G3619' => 'vmu', 'VMungo0720G1204' => 'vmu', 'VMungo0720G1918' => 'vmu', 'VMungo0720G2387' => 'vmu', 'VMungo0720G2961' => 'vmu', 'VMungo1215G2154' => 'vmu', 'VMungo1383G2411' => 'vmu', 'Zm00001eb051130' => 'zma', 'Zm00001eb116830' => 'zma', 'Zm00001eb116850' => 'zma', 'Zm00001eb151740' => 'zma', 'Zm00001eb292360' => 'zma', 'Zm00001eb301640' => 'zma' ), 'gf_id' => 'HOM05D000856', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000856' ), 'data_identifier' => 'HOM05D000856', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000856', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p00010' => 'bna', 'A03p04160' => 'bna', 'A03p17160' => 'bna', 'A04p23370' => 'bna', 'A05p14860' => 'bna', 'A08p37020' => 'bna', 'A09p08050' => 'bna', 'A09p66800' => 'bna', 'A09p67940' => 'bna', 'A10p02680' => 'bna', 'A10p05320' => 'bna', 'Aa31LG1G20560' => 'aar', 'Aa31LG1G20610' => 'aar', 'Aa31LG1G7810' => 'aar', 'Aa31LG5G3590' => 'aar', 'Aa31LG5G6140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3819' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4683' => 'aag', 'Actinidia04480' => 'ach', 'Actinidia05466' => 'ach', 'Actinidia08445' => 'ach', 'Actinidia21170' => 'ach', 'Actinidia24812' => 'ach', 'Actinidia24951' => 'ach', 'Actinidia40088' => 'ach', 'Ah.02g111660' => 'amhyb', 'Ah.11g048900' => 'amhyb', 'Ah.11g049910' => 'amhyb', 'AL1G13870' => 'aly', 'AL1G13880' => 'aly', 'AL1G16760' => 'aly', 'AL390U10020' => 'aly', 'AL4G25520' => 'aly', 'AL6G19890' => 'aly', 'AL6G19900' => 'aly', 'AL6G19910' => 'aly', 'AL8G40100' => 'aly', 'Aqoxy2G03562' => 'aox', 'Aqoxy5G00316' => 'aox', 'Aqoxy5G00926' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1628KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1H403S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2FU6SJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.882I6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8YRY2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YN1SN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AF70II' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZA8L1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F916KL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHRD8H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KTZ8QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S22EMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8M29T' => 'arhy', 'AT1G04270' => 'ath', 'AT1G04280' => 'ath', 'AT1G06750' => 'ath', 'AT1G33850' => 'ath', 'AT2G30630' => 'ath', 'AT5G09490' => 'ath', 'AT5G09500' => 'ath', 'AT5G09510' => 'ath', 'AT5G43640' => 'ath', 'AT5G63070' => 'ath', 'ATR0605G315' => 'atr', 'Atru.chr11.175' => 'acertr', 'Atru.chr11.653' => 'acertr', 'Atru.chr3.1616' => 'acertr', 'Atru.chr4.2230' => 'acertr', 'Atru.chr4.2232' => 'acertr', 'Atru.chr5.1598' => 'acertr', 'Atru.chr5.1600' => 'acertr', 'Atru.chr5.2188' => 'acertr', 'AUR62008326' => 'cqu', 'AUR62011922' => 'cqu', 'AUR62011924' => 'cqu', 'AUR62021771' => 'cqu', 'AUR62032237' => 'cqu', 'AUR62032240' => 'cqu', 'BcaB01g05572' => 'bca', 'BcaB02g10337' => 'bca', 'BcaB04g19944' => 'bca', 'BcaB05g21548' => 'bca', 'BcaB05g21549' => 'bca', 'BcaB05g23227' => 'bca', 'BcaB06g26256' => 'bca', 'BcaB06g26257' => 'bca', 'BcaB06g28379' => 'bca', 'BcaC02g11159' => 'bca', 'BcaC03g13258' => 'bca', 'BcaC03g13259' => 'bca', 'BcaC05g24456' => 'bca', 'BcaC05g24457' => 'bca', 'BcaC07g36922' => 'bca', 'BcaC07g36923' => 'bca', 'BcaC07g42050' => 'bca', 'BcaC07g42176' => 'bca', 'BcaC07g42195' => 'bca', 'BcaC07g42196' => 'bca', 'BcaNung06674' => 'bca', 'BolC2t06351H' => 'bol', 'BolC2t06352H' => 'bol', 'BolC3t12993H' => 'bol', 'BolC4t23525H' => 'bol', 'BolC4t27475H' => 'bol', 'BolC5t29025H' => 'bol', 'BolC5t29026H' => 'bol', 'BolC8t46898H' => 'bol', 'BolC8t46899H' => 'bol', 'BolC8t52630H' => 'bol', 'BolC8t52765H' => 'bol', 'BolC9t53824H' => 'bol', 'BraA03t09760Z' => 'bra', 'BraA03t10990Z' => 'bra', 'BraA05t20413Z' => 'bra', 'BraA08t35602Z' => 'bra', 'BraA09t36458Z' => 'bra', 'BraA09t42018Z' => 'bra', 'BraA09t42129Z' => 'bra', 'BraA10t42536Z' => 'bra', 'BraA10t42537Z' => 'bra', 'C01p10690' => 'bna', 'C02p03890' => 'bna', 'C02p03900' => 'bna', 'C03p04620' => 'bna', 'C04p19870' => 'bna', 'C04p59670' => 'bna', 'C05p02460' => 'bna', 'C05p02470' => 'bna', 'C08p00980' => 'bna', 'C08p00990' => 'bna', 'C08p51030' => 'bna', 'C08p52360' => 'bna', 'C09p09120' => 'bna', 'CAN.G19.15' => 'can', 'CAN.G251.10' => 'can', 'CAN.G251.9' => 'can', 'CAN.G398.24' => 'can', 'CAN.G410.32' => 'can', 'CAN.G881.2' => 'can', 'CANSAT01G3025' => 'cansat', 'CANSAT78G1211' => 'cansat', 'CANSAT78G1218' => 'cansat', 'CANSAT78G1521' => 'cansat', 'CANSAT78G1670' => 'cansat', 'CARHR003600' => 'chi', 'CARHR003610' => 'chi', 'CARHR006290' => 'chi', 'CARHR006430' => 'chi', 'CARHR124110' => 'chi', 'CARHR203870' => 'chi', 'CARHR203880' => 'chi', 'CARHR203890' => 'chi', 'CARHR276880' => 'chi', 'Carub.0001s0346' => 'cru', 'Carub.0001s0347' => 'cru', 'Carub.0001s0607' => 'cru', 'Carub.0003s2768' => 'cru', 'Carub.0003s2769' => 'cru', 'Carub.0004s1178' => 'cru', 'Carub.0006s0806' => 'cru', 'Carub.0006s0807' => 'cru', 'Carub.0006s0808' => 'cru', 'Carub.0008s0501' => 'cru', 'Carub.0008s2379' => 'cru', 'Ca_08655_v3' => 'car', 'Ca_08922_v3' => 'car', 'Ca_08923_v3' => 'car', 'Ca_09119_v3' => 'car', 'Ca_09703_v3' => 'car', 'Ca_09705_v3' => 'car', 'Ca_09835_v3' => 'car', 'Ca_26403_v3' => 'car', 'Ca_30719_v3' => 'car', 'CBR_g17958' => 'cbr', 'CBR_g40516' => 'cbr', 'Cc00_g05350' => 'ccan', 'Cc01_g18690' => 'ccan', 'Cc03_g04830' => 'ccan', 'Cc03_g04850' => 'ccan', 'CDE02G4469' => 'cde', 'CDE06G0883' => 'cde', 'CDE06G1295' => 'cde', 'CDE06G1390' => 'cde', 'CDE07G0584' => 'cde', 'CDE07G1084' => 'cde', 'CDE08G1259' => 'cde', 'Cfa002341' => 'cfa', 'Cfa024337' => 'cfa', 'Ciclev10004749m.g' => 'ccl', 'Ciclev10006127m.g' => 'ccl', 'Ciclev10019720m.g' => 'ccl', 'Ciclev10022652m.g' => 'ccl', 'CiPaw.01G190400' => 'cil', 'CiPaw.01G190500' => 'cil', 'CiPaw.02G116400' => 'cil', 'CiPaw.02G116500' => 'cil', 'CiPaw.04G183000' => 'cil', 'CiPaw.04G183300' => 'cil', 'ClCG05G004610' => 'cla', 'ClCG05G004620' => 'cla', 'ClCG06G006730' => 'cla', 'ClCG06G006740' => 'cla', 'ClCG11G003690' => 'cla', 'COL.COLO4_08276' => 'col', 'COL.COLO4_08277' => 'col', 'COL.COLO4_15787' => 'col', 'COL.COLO4_15789' => 'col', 'Cpa.g.c44815' => 'cpa', 'Cpa.g.sc52.144' => 'cpa', 'Cpa.g.sc58.46' => 'cpa', 'Cpa.g.sc58.47' => 'cpa', 'Cre08.g360900' => 'cre', 'CsaV3_2G013030' => 'csa', 'CsaV3_2G013050' => 'csa', 'CsaV3_2G015620' => 'csa', 'CsaV3_3G012590' => 'csa', 'CsaV3_3G012600' => 'csa', 'CSS0001641' => 'camsi', 'CSS0008310' => 'camsi', 'CSS0013011' => 'camsi', 'CSS0017147' => 'camsi', 'CSS0022970' => 'camsi', 'CSS0025655' => 'camsi', 'CSS0028665' => 'camsi', 'CSS0029117' => 'camsi', 'CSS0032024' => 'camsi', 'CSS0039681' => 'camsi', 'CSS0046516' => 'camsi', 'CSS0050307' => 'camsi', 'DCAR_005871' => 'dca', 'DCAR_007342' => 'dca', 'DCAR_024228' => 'dca', 'DCAR_027277' => 'dca', 'DCAR_030718' => 'dca', 'Dinv20287' => 'din', 'Dinv22461' => 'din', 'Dinv22464' => 'din', 'Dinv29912' => 'din', 'Dinv29913' => 'din', 'Dinv34580' => 'din', 'Dinv34582' => 'din', 'Dinv44632' => 'din', 'Duzib052G0266' => 'dzi', 'Duzib133G0907' => 'dzi', 'Duzib133G1034' => 'dzi', 'Duzib138G0207' => 'dzi', 'Duzib138G0491' => 'dzi', 'Duzib151G0812' => 'dzi', 'Duzib151G1166' => 'dzi', 'Duzib168G0192' => 'dzi', 'Duzib211G0077' => 'dzi', 'Duzib212G0429' => 'dzi', 'Duzib212G0472' => 'dzi', 'ECA233G2617' => 'eca', 'ECA236G4188' => 'eca', 'ECA240G0936' => 'eca', 'ECA240G1129' => 'eca', 'ECA247G0623' => 'eca', 'EL10Ac5g10451' => 'bvu', 'EL10Ac5g10453' => 'bvu', 'EL10Ac5g10894' => 'bvu', 'Eucgr.H00192' => 'egr', 'Eucgr.H00193' => 'egr', 'Eucgr.H00194' => 'egr', 'Eucgr.J01562' => 'egr', 'Eucgr.K03301' => 'egr', 'FAN02G0632' => 'fan', 'FAN05G5378' => 'fan', 'FAN09G3247' => 'fan', 'FAN12G0435' => 'fan', 'FAN12G2426' => 'fan', 'FAN14G1707' => 'fan', 'FAN14G4725' => 'fan', 'FAN15G2071' => 'fan', 'FAN17G3065' => 'fan', 'FAN19G1376' => 'fan', 'FAN20G0354' => 'fan', 'FAN20G2429' => 'fan', 'FAN20G2658' => 'fan', 'FAN24G2343' => 'fan', 'FAN27G2362' => 'fan', 'FAN28G1765' => 'fan', 'FvH4_1g16020' => 'fve', 'FvH4_2g04890' => 'fve', 'FvH4_2g22270' => 'fve', 'FvH4_4g02630' => 'fve', 'FvH4_4g02640' => 'fve', 'FvH4_6g02650' => 'fve', 'Glyma.02G140600' => 'gma', 'Glyma.03G159900' => 'gma', 'Glyma.05G234800' => 'gma', 'Glyma.07G269600' => 'gma', 'Glyma.08G042300' => 'gma', 'Glyma.10G033500' => 'gma', 'Glyma.10G185200' => 'gma', 'Glyma.17G004300' => 'gma', 'Glyma.19G161900' => 'gma', 'Glyma.20G205100' => 'gma', 'Glyma.20G205200' => 'gma', 'Gohir.A01G139101' => 'ghi', 'Gohir.A02G035600' => 'ghi', 'Gohir.A02G117901' => 'ghi', 'Gohir.A07G210100' => 'ghi', 'Gohir.A07G210200' => 'ghi', 'Gohir.A08G061100' => 'ghi', 'Gohir.A09G223000' => 'ghi', 'Gohir.A09G223100' => 'ghi', 'Gohir.A10G113900' => 'ghi', 'Gohir.A10G114000' => 'ghi', 'Gohir.D02G042300' => 'ghi', 'Gohir.D07G216100' => 'ghi', 'Gohir.D07G216200' => 'ghi', 'Gohir.D08G070400' => 'ghi', 'Gohir.D09G225000' => 'ghi', 'Gohir.D09G225100' => 'ghi', 'Gohir.D10G152300' => 'ghi', 'Gohir.D10G153200' => 'ghi', 'Gohir.D11G133701' => 'ghi', 'Gorai.004G074100' => 'gra', 'Gorai.005G046800' => 'gra', 'Gorai.006G246500' => 'gra', 'Gorai.006G246600' => 'gra', 'Gorai.007G142900' => 'gra', 'Gorai.011G171000' => 'gra', 'Gorai.011G171100' => 'gra', 'Gorai.013G104300' => 'gra', 'Gorai.013G104400' => 'gra', 'GSVIVG01000754001' => 'vvi', 'GSVIVG01000756001' => 'vvi', 'GSVIVG01010903001' => 'vvi', 'GSVIVG01017623001' => 'vvi', 'GSVIVG01018113001' => 'vvi', 'GSVIVG01018116001' => 'vvi', 'GSVIVG01018118001' => 'vvi', 'HanXRQChr03g0076211' => 'han', 'HanXRQChr03g0092431' => 'han', 'HanXRQChr03g0092441' => 'han', 'HanXRQChr03g0092591' => 'han', 'HanXRQChr03g0092671' => 'han', 'HanXRQChr03g0092681' => 'han', 'HanXRQChr03g0092691' => 'han', 'HanXRQChr03g0092701' => 'han', 'HanXRQChr03g0092721' => 'han', 'HanXRQChr03g0092731' => 'han', 'HanXRQChr04g0113681' => 'han', 'HanXRQChr10g0281371' => 'han', 'HanXRQChr11g0337141' => 'han', 'HanXRQChr13g0424521' => 'han', 'HanXRQChr13g0424531' => 'han', 'HanXRQChr13g0424541' => 'han', 'HanXRQChr16g0498221' => 'han', 'Haze_04377' => 'cav', 'Haze_11298' => 'cav', 'Haze_24547' => 'cav', 'Haze_24550' => 'cav', 'Haze_26587' => 'cav', 'Hma1.2p1_0650F.1_g195410' => 'hma', 'Hma1.2p1_0893F.1_g233470' => 'hma', 'HPP92_006508' => 'vpl', 'HPP92_024780' => 'vpl', 'Hund02688' => 'sun', 'Hund09380' => 'sun', 'Hund09381' => 'sun', 'Hund09832' => 'sun', 'Hund09833' => 'sun', 'Hund11351' => 'sun', 'Hund11513' => 'sun', 'Lalb_Chr06g0162591' => 'lal', 'Lalb_Chr06g0162601' => 'lal', 'Lalb_Chr06g0169321' => 'lal', 'Lalb_Chr09g0330951' => 'lal', 'Lalb_Chr16g0387631' => 'lal', 'Lalb_Chr21g0306241' => 'lal', 'Lalb_Chr25g0290051' => 'lal', 'Lalb_Chr25g0290061' => 'lal', 'Lalb_Chr25g0290071' => 'lal', 'Lj1g0003876' => 'lja', 'Lj1P1207T36' => 'lonja', 'Lj2C1156G12' => 'lonja', 'Lj3A793G39' => 'lonja', 'Lj3C580G2' => 'lonja', 'Lj3C780G2' => 'lonja', 'Lj3C780T4' => 'lonja', 'Lj3C793G9' => 'lonja', 'Lj4g0012960' => 'lja', 'Lj5g0021252' => 'lja', 'Lj5g0021484' => 'lja', 'Lj5g0024528' => 'lja', 'Lj6A399T12' => 'lonja', 'Lj6A656G65' => 'lonja', 'Lsat_1_v5_gn_3_125500' => 'lsa', 'Lsat_1_v5_gn_3_125540' => 'lsa', 'Lsat_1_v5_gn_5_72701' => 'lsa', 'Lsat_1_v5_gn_8_91560' => 'lsa', 'Lsat_1_v5_gn_9_9640' => 'lsa', 'Manes.01G200600' => 'mes', 'Manes.01G200700' => 'mes', 'Manes.03G168900' => 'mes', 'Manes.03G169000' => 'mes', 'Manes.05G085801' => 'mes', 'Manes.05G086200' => 'mes', 'Manes.15G036700' => 'mes', 'Manes.15G036900' => 'mes', 'Mapoly0004s0172' => 'mpo', 'Mapoly0023s0001' => 'mpo', 'Mapoly0142s0012' => 'mpo', 'MBI01_g32854_MAGBIO' => 'mbi', 'MBI11_g24427_MAGBIO' => 'mbi', 'MBI11_g47319_MAGBIO' => 'mbi', 'MCO01G433' => 'mco', 'MD00G1187800' => 'mdo', 'MD04G1226500' => 'mdo', 'MD05G1203900' => 'mdo', 'MD10G1191100' => 'mdo', 'MD12G1243500' => 'mdo', 'MD13G1207000' => 'mdo', 'MD13G1207100' => 'mdo', 'MD16G1208600' => 'mdo', 'Medtr1g050352' => 'mtr', 'Medtr1g070385' => 'mtr', 'Medtr1g070450' => 'mtr', 'Medtr1g075200' => 'mtr', 'Medtr1g075250' => 'mtr', 'Medtr1g075260' => 'mtr', 'Medtr1g475250' => 'mtr', 'Medtr4g075450' => 'mtr', 'Medtr7g096300' => 'mtr', 'Medtr8g105110' => 'mtr', 'MELO3C006470.2' => 'cme', 'MELO3C006471.2' => 'cme', 'MELO3C020772.2' => 'cme', 'MELO3C026780.2' => 'cme', 'MELO3C026781.2' => 'cme', 'Migut.D00390' => 'egut', 'Migut.G00435' => 'egut', 'Migut.G00436' => 'egut', 'Migut.G00718' => 'egut', 'MSTRG.21891' => 'ama', 'MSTRG.26910' => 'ama', 'MSTRG.4099' => 'ama', 'MSTRG.9925' => 'ama', 'Nitab4.5_0000165g0010' => 'nta', 'Nitab4.5_0000209g0180' => 'nta', 'Nitab4.5_0000244g0440' => 'nta', 'Nitab4.5_0000525g0220' => 'nta', 'Nitab4.5_0001597g0020' => 'nta', 'Nitab4.5_0001878g0040' => 'nta', 'Nitab4.5_0001878g0060' => 'nta', 'Nitab4.5_0002838g0100' => 'nta', 'Nitab4.5_0002838g0120' => 'nta', 'Nitab4.5_0004798g0030' => 'nta', 'Nitab4.5_0005420g0010' => 'nta', 'Nitab4.5_0005507g0010' => 'nta', 'Nitab4.5_0005574g0020' => 'nta', 'Nitab4.5_0005838g0010' => 'nta', 'Nitab4.5_0010580g0020' => 'nta', 'Nn1g02599' => 'nnu', 'Nn1g02608' => 'nnu', 'Nn3g17742' => 'nnu', 'Nn3g19534' => 'nnu', 'Nn3g19535' => 'nnu', 'Oeu008790.1' => 'oeu', 'Oeu008792.1' => 'oeu', 'Oeu032590.1' => 'oeu', 'Oeu035349.1' => 'oeu', 'Oeu049791.1' => 'oeu', 'Os01g0774500' => 'osa', 'Os03g0628800' => 'osa', 'Os03g0798600' => 'osa', 'Os05g0508800' => 'osa', 'Peaxi162Scf00036g02018' => 'pax', 'Peaxi162Scf00578g00032' => 'pax', 'Peaxi162Scf00578g00317' => 'pax', 'Peaxi162Scf00785g00114' => 'pax', 'Peaxi162Scf00813g00119' => 'pax', 'Peaxi162Scf00906g00227' => 'pax', 'PGR004G0875' => 'pgr', 'PGR004G2424' => 'pgr', 'PGR031G1239' => 'pgr', 'PGR031G2474' => 'pgr', 'PGR044G0423' => 'pgr', 'PGSC0003DMG400001128' => 'stu', 'PGSC0003DMG400007336' => 'stu', 'PGSC0003DMG400016318' => 'stu', 'PGSC0003DMG400016319' => 'stu', 'PGSC0003DMG400018074' => 'stu', 'Phvul.001G157700' => 'pvu', 'Phvul.002G148550' => 'pvu', 'Phvul.002G320200' => 'pvu', 'Phvul.003G089200' => 'pvu', 'Phvul.007G126000' => 'pvu', 'Phvul.007G126100' => 'pvu', 'Phvul.007G178000' => 'pvu', 'Phvul.007G178200' => 'pvu', 'Potri.002G043000' => 'ptr', 'Potri.002G043200' => 'ptr', 'Potri.003G123750' => 'ptr', 'Potri.005G055401' => 'ptr', 'Potri.005G219700' => 'ptr', 'Potri.005G220000' => 'ptr', 'Potri.008G161901' => 'ptr', 'Potri.008G162000' => 'ptr', 'Potri.008G162400' => 'ptr', 'Potri.010G076900' => 'ptr', 'Pp3c12_9180' => 'ppa', 'Pp3c13_19770' => 'ppa', 'Pp3c14_22950' => 'ppa', 'Pp3c16_12160' => 'ppa', 'Pp3c27_7820' => 'ppa', 'Pp3c2_3490' => 'ppa', 'Pp3c3_23700' => 'ppa', 'Pp3c3_36520' => 'ppa', 'Pp3c4_15250' => 'ppa', 'PRCOL_00007002' => 'pco', 'Prupe.1G030600' => 'ppe', 'Prupe.1G030700' => 'ppe', 'Prupe.6G345200' => 'ppe', 'Prupe.8G230300' => 'ppe', 'Prupe.8G230500' => 'ppe', 'Psat3g059600' => 'psa', 'Psat5g200920' => 'psa', 'Psat6g056440' => 'psa', 'Psat6g057360' => 'psa', 'Psat6g134120' => 'psa', 'Psat6g134160' => 'psa', 'Psat7g008640' => 'psa', 'Psat7g185240' => 'psa', 'PSO017G1330' => 'pso', 'PSO063G6097' => 'pso', 'PSO170G0835' => 'pso', 'PSO170G2499' => 'pso', 'PSO210G5058' => 'pso', 'PSO210G6154' => 'pso', 'PSO585G0031' => 'pso', 'PSO832G0264' => 'pso', 'PSO832G4288' => 'pso', 'QL03p027355' => 'qlo', 'QL03p027430' => 'qlo', 'QL04p081380' => 'qlo', 'QL06p015642' => 'qlo', 'QL06p015650' => 'qlo', 'QL06p015686' => 'qlo', 'QL12p042927' => 'qlo', 'QL93p1863_0035' => 'qlo', 'RcHm_v2.0_Chr3g0450581' => 'rch', 'RcHm_v2.0_Chr4g0390371' => 'rch', 'RcHm_v2.0_Chr4g0390381' => 'rch', 'RcHm_v2.0_Chr4g0390491' => 'rch', 'RcHm_v2.0_Chr4g0390501' => 'rch', 'RcHm_v2.0_Chr6g0289231' => 'rch', 'Rhsim04G0190400' => 'rsi', 'Rhsim04G0190500' => 'rsi', 'Rhsim04G0190600' => 'rsi', 'Rhsim13G0031400' => 'rsi', 'Rhsim13G0165600' => 'rsi', 'RhsimUnG0114600' => 'rsi', 'RhsimUnG0114700' => 'rsi', 'Sabra02G0034800' => 'sbr', 'Sabra02G0035100' => 'sbr', 'Sabra05G0168600' => 'sbr', 'Sabra05G0168800' => 'sbr', 'Sabra08G0123700' => 'sbr', 'Sabra10G0031900' => 'sbr', 'Sabra13G0039000' => 'sbr', 'SalBow2G0782' => 'sbo', 'SalBow2G1403' => 'sbo', 'SalBow4G0074' => 'sbo', 'SalBow4G2635' => 'sbo', 'SalBow5G3010' => 'sbo', 'Sc05g0000870' => 'sci', 'Sc05g0000890' => 'sci', 'Sc13g0005000' => 'sci', 'Sc13g0005030' => 'sci', 'Sc19g0003790' => 'sci', 'Sc19g0003800' => 'sci', 'Sed0003467' => 'sed', 'Sed0009355' => 'sed', 'Sed0009894' => 'sed', 'Sed0011972' => 'sed', 'Sed0021483' => 'sed', 'Sed0021750' => 'sed', 'Sed0026279' => 'sed', 'SEGI_05312' => 'sgi', 'SEGI_10112' => 'sgi', 'SEGI_15835' => 'sgi', 'SEGI_30386' => 'sgi', 'SEGI_34122' => 'sgi', 'SEGI_35063' => 'sgi', 'SGA_v2.0_scaffold101G29794' => 'sas', 'SGA_v2.0_scaffold1G00573' => 'sas', 'SGA_v2.0_scaffold79G25637' => 'sas', 'SGA_v2.0_scaffold88G27283' => 'sas', 'SGA_v2.0_scaffold88G27285' => 'sas', 'SGA_v2.0_scaffold88G27331' => 'sas', 'SHI09937' => 'shi', 'SMO119G0302' => 'smo', 'SMO137G0231' => 'smo', 'SMO367G1151' => 'smo', 'Solyc02g082000.3' => 'sly', 'Solyc06g031670.3' => 'sly', 'Solyc06g053810.3' => 'sly', 'Solyc07g025457.1' => 'sly', 'Solyc08g059740.1' => 'sly', 'Solyc08g059750.3' => 'sly', 'Solyc09g083370.3' => 'sly', 'Solyc12g038950.3' => 'sly', 'Sopen02g026630' => 'spe', 'Sopen06g018930' => 'spe', 'Sopen06g018940' => 'spe', 'Sopen08g009460' => 'spe', 'Sopen09g032290' => 'spe', 'Sp1g03080' => 'spa', 'Sp1g03090' => 'spa', 'Sp1g05480' => 'spa', 'Sp2g07860' => 'spa', 'Sp2g08430' => 'spa', 'Sp2g08440' => 'spa', 'Sp2g26200' => 'spa', 'Sp4g13170' => 'spa', 'Sp6g33840' => 'spa', 'SpUn1204_0010' => 'spa', 'TAR365G0908' => 'tar', 'TAR381G1270' => 'tar', 'TAR381G1651' => 'tar', 'TAR625G1131' => 'tar', 'TAR633G0962' => 'tar', 'TAR633G1729' => 'tar', 'TAR633G1864' => 'tar', 'TAR636G0221' => 'tar', 'TAR636G0314' => 'tar', 'TAR636G3202' => 'tar', 'THA.LOC104800805' => 'tha', 'THA.LOC104801096' => 'tha', 'THA.LOC104801555' => 'tha', 'THA.LOC104808491' => 'tha', 'THA.LOC104808595' => 'tha', 'THA.LOC104815985' => 'tha', 'THA.LOC104822250' => 'tha', 'THA.LOC104826071' => 'tha', 'Thecc.01G265200' => 'tca', 'Thecc.01G265300' => 'tca', 'Thecc.01G265700' => 'tca', 'Thecc.03G109100' => 'tca', 'Thecc.04G245900' => 'tca', 'Thecc.04G246000' => 'tca', 'Thhalv10003334m.g' => 'esa', 'Thhalv10005508m.g' => 'esa', 'Thhalv10005643m.g' => 'esa', 'Thhalv10007316m.g' => 'esa', 'Thhalv10009006m.g' => 'esa', 'Thhalv10009309m.g' => 'esa', 'Thhalv10014917m.g' => 'esa', 'Thhalv10014919m.g' => 'esa', 'Thhalv10015393m.g' => 'esa', 'Thhalv10016515m.g' => 'esa', 'Thhalv10029242m.g' => 'esa', 'TPR.G16654' => 'tpr', 'TPR.G20589' => 'tpr', 'TPR.G23029' => 'tpr', 'TPR.G27731' => 'tpr', 'TPR.G28889' => 'tpr', 'TPR.G28899' => 'tpr', 'TPR.G30846' => 'tpr', 'TPR.G5452' => 'tpr', 'TPR.G5713' => 'tpr', 'TPR.G9046' => 'tpr', 'TPR.G9061' => 'tpr', 'TWI09G1075' => 'twi', 'TWI12G0806' => 'twi', 'TWI18G0108' => 'twi', 'TWI53G1361' => 'twi', 'TWI73G0185' => 'twi', 'TWI73G0427' => 'twi', 'unitig_37.g12001' => 'ugi', 'unitig_747.g21660' => 'ugi', 'unitig_748.g7232' => 'ugi', 'unitig_748.g7315' => 'ugi', 'unitig_85.g27262' => 'ugi', 'unitig_92.g28220' => 'ugi', 'vmacro02632' => 'vma', 'vmacro08410' => 'vma', 'vmacro08411' => 'vma', 'vmacro15407' => 'vma', 'VMungo0251G3619' => 'vmu', 'VMungo0720G1204' => 'vmu', 'VMungo0720G1918' => 'vmu', 'VMungo0720G2387' => 'vmu', 'VMungo0720G2961' => 'vmu', 'VMungo1215G2154' => 'vmu', 'VMungo1383G2411' => 'vmu', 'Zm00001eb051130' => 'zma', 'Zm00001eb116830' => 'zma', 'Zm00001eb116850' => 'zma', 'Zm00001eb151740' => 'zma', 'Zm00001eb292360' => 'zma', 'Zm00001eb301640' => 'zma' ) $gf_id = 'HOM05D000856' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000856' ) $data_identifier = 'HOM05D000856' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 13, 'ath' => (int) 10, 'atr' => (int) 1, 'acertr' => (int) 8, 'cqu' => (int) 6, 'bca' => (int) 21, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 11, 'car' => (int) 9, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 8, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 5, 'fan' => (int) 16, 'fve' => (int) 6, 'gma' => (int) 11, 'ghi' => (int) 19, 'gra' => (int) 9, 'vvi' => (int) 7, 'han' => (int) 17, 'cav' => (int) 5, 'hma' => (int) 2, 'vpl' => (int) 2, 'sun' => (int) 7, 'lal' => (int) 9, 'lja' => (int) 5, 'lonja' => (int) 9, 'lsa' => (int) 5, 'mes' => (int) 8, 'mpo' => (int) 3, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 10, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 15, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 9, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 9, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 6, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 5, 'spa' => (int) 10, 'tar' => (int) 10, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 11, 'tpr' => (int) 11, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 4, 'vmu' => (int) 7, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb301640' $species_info = array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ) $local_species = 'sas' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000856', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p00010' => 'bna', 'A03p04160' => 'bna', 'A03p17160' => 'bna', 'A04p23370' => 'bna', 'A05p14860' => 'bna', 'A08p37020' => 'bna', 'A09p08050' => 'bna', 'A09p66800' => 'bna', 'A09p67940' => 'bna', 'A10p02680' => 'bna', 'A10p05320' => 'bna', 'Aa31LG1G20560' => 'aar', 'Aa31LG1G20610' => 'aar', 'Aa31LG1G7810' => 'aar', 'Aa31LG5G3590' => 'aar', 'Aa31LG5G6140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3819' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4683' => 'aag', 'Actinidia04480' => 'ach', 'Actinidia05466' => 'ach', 'Actinidia08445' => 'ach', 'Actinidia21170' => 'ach', 'Actinidia24812' => 'ach', 'Actinidia24951' => 'ach', 'Actinidia40088' => 'ach', 'Ah.02g111660' => 'amhyb', 'Ah.11g048900' => 'amhyb', 'Ah.11g049910' => 'amhyb', 'AL1G13870' => 'aly', 'AL1G13880' => 'aly', 'AL1G16760' => 'aly', 'AL390U10020' => 'aly', 'AL4G25520' => 'aly', 'AL6G19890' => 'aly', 'AL6G19900' => 'aly', 'AL6G19910' => 'aly', 'AL8G40100' => 'aly', 'Aqoxy2G03562' => 'aox', 'Aqoxy5G00316' => 'aox', 'Aqoxy5G00926' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1628KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1H403S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2FU6SJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.882I6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8YRY2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YN1SN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AF70II' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZA8L1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F916KL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHRD8H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KTZ8QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S22EMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8M29T' => 'arhy', 'AT1G04270' => 'ath', 'AT1G04280' => 'ath', 'AT1G06750' => 'ath', 'AT1G33850' => 'ath', 'AT2G30630' => 'ath', 'AT5G09490' => 'ath', 'AT5G09500' => 'ath', 'AT5G09510' => 'ath', 'AT5G43640' => 'ath', 'AT5G63070' => 'ath', 'ATR0605G315' => 'atr', 'Atru.chr11.175' => 'acertr', 'Atru.chr11.653' => 'acertr', 'Atru.chr3.1616' => 'acertr', 'Atru.chr4.2230' => 'acertr', 'Atru.chr4.2232' => 'acertr', 'Atru.chr5.1598' => 'acertr', 'Atru.chr5.1600' => 'acertr', 'Atru.chr5.2188' => 'acertr', 'AUR62008326' => 'cqu', 'AUR62011922' => 'cqu', 'AUR62011924' => 'cqu', 'AUR62021771' => 'cqu', 'AUR62032237' => 'cqu', 'AUR62032240' => 'cqu', 'BcaB01g05572' => 'bca', 'BcaB02g10337' => 'bca', 'BcaB04g19944' => 'bca', 'BcaB05g21548' => 'bca', 'BcaB05g21549' => 'bca', 'BcaB05g23227' => 'bca', 'BcaB06g26256' => 'bca', 'BcaB06g26257' => 'bca', 'BcaB06g28379' => 'bca', 'BcaC02g11159' => 'bca', 'BcaC03g13258' => 'bca', 'BcaC03g13259' => 'bca', 'BcaC05g24456' => 'bca', 'BcaC05g24457' => 'bca', 'BcaC07g36922' => 'bca', 'BcaC07g36923' => 'bca', 'BcaC07g42050' => 'bca', 'BcaC07g42176' => 'bca', 'BcaC07g42195' => 'bca', 'BcaC07g42196' => 'bca', 'BcaNung06674' => 'bca', 'BolC2t06351H' => 'bol', 'BolC2t06352H' => 'bol', 'BolC3t12993H' => 'bol', 'BolC4t23525H' => 'bol', 'BolC4t27475H' => 'bol', 'BolC5t29025H' => 'bol', 'BolC5t29026H' => 'bol', 'BolC8t46898H' => 'bol', 'BolC8t46899H' => 'bol', 'BolC8t52630H' => 'bol', 'BolC8t52765H' => 'bol', 'BolC9t53824H' => 'bol', 'BraA03t09760Z' => 'bra', 'BraA03t10990Z' => 'bra', 'BraA05t20413Z' => 'bra', 'BraA08t35602Z' => 'bra', 'BraA09t36458Z' => 'bra', 'BraA09t42018Z' => 'bra', 'BraA09t42129Z' => 'bra', 'BraA10t42536Z' => 'bra', 'BraA10t42537Z' => 'bra', 'C01p10690' => 'bna', 'C02p03890' => 'bna', 'C02p03900' => 'bna', 'C03p04620' => 'bna', 'C04p19870' => 'bna', 'C04p59670' => 'bna', 'C05p02460' => 'bna', 'C05p02470' => 'bna', 'C08p00980' => 'bna', 'C08p00990' => 'bna', 'C08p51030' => 'bna', 'C08p52360' => 'bna', 'C09p09120' => 'bna', 'CAN.G19.15' => 'can', 'CAN.G251.10' => 'can', 'CAN.G251.9' => 'can', 'CAN.G398.24' => 'can', 'CAN.G410.32' => 'can', 'CAN.G881.2' => 'can', 'CANSAT01G3025' => 'cansat', 'CANSAT78G1211' => 'cansat', 'CANSAT78G1218' => 'cansat', 'CANSAT78G1521' => 'cansat', 'CANSAT78G1670' => 'cansat', 'CARHR003600' => 'chi', 'CARHR003610' => 'chi', 'CARHR006290' => 'chi', 'CARHR006430' => 'chi', 'CARHR124110' => 'chi', 'CARHR203870' => 'chi', 'CARHR203880' => 'chi', 'CARHR203890' => 'chi', 'CARHR276880' => 'chi', 'Carub.0001s0346' => 'cru', 'Carub.0001s0347' => 'cru', 'Carub.0001s0607' => 'cru', 'Carub.0003s2768' => 'cru', 'Carub.0003s2769' => 'cru', 'Carub.0004s1178' => 'cru', 'Carub.0006s0806' => 'cru', 'Carub.0006s0807' => 'cru', 'Carub.0006s0808' => 'cru', 'Carub.0008s0501' => 'cru', 'Carub.0008s2379' => 'cru', 'Ca_08655_v3' => 'car', 'Ca_08922_v3' => 'car', 'Ca_08923_v3' => 'car', 'Ca_09119_v3' => 'car', 'Ca_09703_v3' => 'car', 'Ca_09705_v3' => 'car', 'Ca_09835_v3' => 'car', 'Ca_26403_v3' => 'car', 'Ca_30719_v3' => 'car', 'CBR_g17958' => 'cbr', 'CBR_g40516' => 'cbr', 'Cc00_g05350' => 'ccan', 'Cc01_g18690' => 'ccan', 'Cc03_g04830' => 'ccan', 'Cc03_g04850' => 'ccan', 'CDE02G4469' => 'cde', 'CDE06G0883' => 'cde', 'CDE06G1295' => 'cde', 'CDE06G1390' => 'cde', 'CDE07G0584' => 'cde', 'CDE07G1084' => 'cde', 'CDE08G1259' => 'cde', 'Cfa002341' => 'cfa', 'Cfa024337' => 'cfa', 'Ciclev10004749m.g' => 'ccl', 'Ciclev10006127m.g' => 'ccl', 'Ciclev10019720m.g' => 'ccl', 'Ciclev10022652m.g' => 'ccl', 'CiPaw.01G190400' => 'cil', 'CiPaw.01G190500' => 'cil', 'CiPaw.02G116400' => 'cil', 'CiPaw.02G116500' => 'cil', 'CiPaw.04G183000' => 'cil', 'CiPaw.04G183300' => 'cil', 'ClCG05G004610' => 'cla', 'ClCG05G004620' => 'cla', 'ClCG06G006730' => 'cla', 'ClCG06G006740' => 'cla', 'ClCG11G003690' => 'cla', 'COL.COLO4_08276' => 'col', 'COL.COLO4_08277' => 'col', 'COL.COLO4_15787' => 'col', 'COL.COLO4_15789' => 'col', 'Cpa.g.c44815' => 'cpa', 'Cpa.g.sc52.144' => 'cpa', 'Cpa.g.sc58.46' => 'cpa', 'Cpa.g.sc58.47' => 'cpa', 'Cre08.g360900' => 'cre', 'CsaV3_2G013030' => 'csa', 'CsaV3_2G013050' => 'csa', 'CsaV3_2G015620' => 'csa', 'CsaV3_3G012590' => 'csa', 'CsaV3_3G012600' => 'csa', 'CSS0001641' => 'camsi', 'CSS0008310' => 'camsi', 'CSS0013011' => 'camsi', 'CSS0017147' => 'camsi', 'CSS0022970' => 'camsi', 'CSS0025655' => 'camsi', 'CSS0028665' => 'camsi', 'CSS0029117' => 'camsi', 'CSS0032024' => 'camsi', 'CSS0039681' => 'camsi', 'CSS0046516' => 'camsi', 'CSS0050307' => 'camsi', 'DCAR_005871' => 'dca', 'DCAR_007342' => 'dca', 'DCAR_024228' => 'dca', 'DCAR_027277' => 'dca', 'DCAR_030718' => 'dca', 'Dinv20287' => 'din', 'Dinv22461' => 'din', 'Dinv22464' => 'din', 'Dinv29912' => 'din', 'Dinv29913' => 'din', 'Dinv34580' => 'din', 'Dinv34582' => 'din', 'Dinv44632' => 'din', 'Duzib052G0266' => 'dzi', 'Duzib133G0907' => 'dzi', 'Duzib133G1034' => 'dzi', 'Duzib138G0207' => 'dzi', 'Duzib138G0491' => 'dzi', 'Duzib151G0812' => 'dzi', 'Duzib151G1166' => 'dzi', 'Duzib168G0192' => 'dzi', 'Duzib211G0077' => 'dzi', 'Duzib212G0429' => 'dzi', 'Duzib212G0472' => 'dzi', 'ECA233G2617' => 'eca', 'ECA236G4188' => 'eca', 'ECA240G0936' => 'eca', 'ECA240G1129' => 'eca', 'ECA247G0623' => 'eca', 'EL10Ac5g10451' => 'bvu', 'EL10Ac5g10453' => 'bvu', 'EL10Ac5g10894' => 'bvu', 'Eucgr.H00192' => 'egr', 'Eucgr.H00193' => 'egr', 'Eucgr.H00194' => 'egr', 'Eucgr.J01562' => 'egr', 'Eucgr.K03301' => 'egr', 'FAN02G0632' => 'fan', 'FAN05G5378' => 'fan', 'FAN09G3247' => 'fan', 'FAN12G0435' => 'fan', 'FAN12G2426' => 'fan', 'FAN14G1707' => 'fan', 'FAN14G4725' => 'fan', 'FAN15G2071' => 'fan', 'FAN17G3065' => 'fan', 'FAN19G1376' => 'fan', 'FAN20G0354' => 'fan', 'FAN20G2429' => 'fan', 'FAN20G2658' => 'fan', 'FAN24G2343' => 'fan', 'FAN27G2362' => 'fan', 'FAN28G1765' => 'fan', 'FvH4_1g16020' => 'fve', 'FvH4_2g04890' => 'fve', 'FvH4_2g22270' => 'fve', 'FvH4_4g02630' => 'fve', 'FvH4_4g02640' => 'fve', 'FvH4_6g02650' => 'fve', 'Glyma.02G140600' => 'gma', 'Glyma.03G159900' => 'gma', 'Glyma.05G234800' => 'gma', 'Glyma.07G269600' => 'gma', 'Glyma.08G042300' => 'gma', 'Glyma.10G033500' => 'gma', 'Glyma.10G185200' => 'gma', 'Glyma.17G004300' => 'gma', 'Glyma.19G161900' => 'gma', 'Glyma.20G205100' => 'gma', 'Glyma.20G205200' => 'gma', 'Gohir.A01G139101' => 'ghi', 'Gohir.A02G035600' => 'ghi', 'Gohir.A02G117901' => 'ghi', 'Gohir.A07G210100' => 'ghi', 'Gohir.A07G210200' => 'ghi', 'Gohir.A08G061100' => 'ghi', 'Gohir.A09G223000' => 'ghi', 'Gohir.A09G223100' => 'ghi', 'Gohir.A10G113900' => 'ghi', 'Gohir.A10G114000' => 'ghi', 'Gohir.D02G042300' => 'ghi', 'Gohir.D07G216100' => 'ghi', 'Gohir.D07G216200' => 'ghi', 'Gohir.D08G070400' => 'ghi', 'Gohir.D09G225000' => 'ghi', 'Gohir.D09G225100' => 'ghi', 'Gohir.D10G152300' => 'ghi', 'Gohir.D10G153200' => 'ghi', 'Gohir.D11G133701' => 'ghi', 'Gorai.004G074100' => 'gra', 'Gorai.005G046800' => 'gra', 'Gorai.006G246500' => 'gra', 'Gorai.006G246600' => 'gra', 'Gorai.007G142900' => 'gra', 'Gorai.011G171000' => 'gra', 'Gorai.011G171100' => 'gra', 'Gorai.013G104300' => 'gra', 'Gorai.013G104400' => 'gra', 'GSVIVG01000754001' => 'vvi', 'GSVIVG01000756001' => 'vvi', 'GSVIVG01010903001' => 'vvi', 'GSVIVG01017623001' => 'vvi', 'GSVIVG01018113001' => 'vvi', 'GSVIVG01018116001' => 'vvi', 'GSVIVG01018118001' => 'vvi', 'HanXRQChr03g0076211' => 'han', 'HanXRQChr03g0092431' => 'han', 'HanXRQChr03g0092441' => 'han', 'HanXRQChr03g0092591' => 'han', 'HanXRQChr03g0092671' => 'han', 'HanXRQChr03g0092681' => 'han', 'HanXRQChr03g0092691' => 'han', 'HanXRQChr03g0092701' => 'han', 'HanXRQChr03g0092721' => 'han', 'HanXRQChr03g0092731' => 'han', 'HanXRQChr04g0113681' => 'han', 'HanXRQChr10g0281371' => 'han', 'HanXRQChr11g0337141' => 'han', 'HanXRQChr13g0424521' => 'han', 'HanXRQChr13g0424531' => 'han', 'HanXRQChr13g0424541' => 'han', 'HanXRQChr16g0498221' => 'han', 'Haze_04377' => 'cav', 'Haze_11298' => 'cav', 'Haze_24547' => 'cav', 'Haze_24550' => 'cav', 'Haze_26587' => 'cav', 'Hma1.2p1_0650F.1_g195410' => 'hma', 'Hma1.2p1_0893F.1_g233470' => 'hma', 'HPP92_006508' => 'vpl', 'HPP92_024780' => 'vpl', 'Hund02688' => 'sun', 'Hund09380' => 'sun', 'Hund09381' => 'sun', 'Hund09832' => 'sun', 'Hund09833' => 'sun', 'Hund11351' => 'sun', 'Hund11513' => 'sun', 'Lalb_Chr06g0162591' => 'lal', 'Lalb_Chr06g0162601' => 'lal', 'Lalb_Chr06g0169321' => 'lal', 'Lalb_Chr09g0330951' => 'lal', 'Lalb_Chr16g0387631' => 'lal', 'Lalb_Chr21g0306241' => 'lal', 'Lalb_Chr25g0290051' => 'lal', 'Lalb_Chr25g0290061' => 'lal', 'Lalb_Chr25g0290071' => 'lal', 'Lj1g0003876' => 'lja', 'Lj1P1207T36' => 'lonja', 'Lj2C1156G12' => 'lonja', 'Lj3A793G39' => 'lonja', 'Lj3C580G2' => 'lonja', 'Lj3C780G2' => 'lonja', 'Lj3C780T4' => 'lonja', 'Lj3C793G9' => 'lonja', 'Lj4g0012960' => 'lja', 'Lj5g0021252' => 'lja', 'Lj5g0021484' => 'lja', 'Lj5g0024528' => 'lja', 'Lj6A399T12' => 'lonja', 'Lj6A656G65' => 'lonja', 'Lsat_1_v5_gn_3_125500' => 'lsa', 'Lsat_1_v5_gn_3_125540' => 'lsa', 'Lsat_1_v5_gn_5_72701' => 'lsa', 'Lsat_1_v5_gn_8_91560' => 'lsa', 'Lsat_1_v5_gn_9_9640' => 'lsa', 'Manes.01G200600' => 'mes', 'Manes.01G200700' => 'mes', 'Manes.03G168900' => 'mes', 'Manes.03G169000' => 'mes', 'Manes.05G085801' => 'mes', 'Manes.05G086200' => 'mes', 'Manes.15G036700' => 'mes', 'Manes.15G036900' => 'mes', 'Mapoly0004s0172' => 'mpo', 'Mapoly0023s0001' => 'mpo', 'Mapoly0142s0012' => 'mpo', 'MBI01_g32854_MAGBIO' => 'mbi', 'MBI11_g24427_MAGBIO' => 'mbi', 'MBI11_g47319_MAGBIO' => 'mbi', 'MCO01G433' => 'mco', 'MD00G1187800' => 'mdo', 'MD04G1226500' => 'mdo', 'MD05G1203900' => 'mdo', 'MD10G1191100' => 'mdo', 'MD12G1243500' => 'mdo', 'MD13G1207000' => 'mdo', 'MD13G1207100' => 'mdo', 'MD16G1208600' => 'mdo', 'Medtr1g050352' => 'mtr', 'Medtr1g070385' => 'mtr', 'Medtr1g070450' => 'mtr', 'Medtr1g075200' => 'mtr', 'Medtr1g075250' => 'mtr', 'Medtr1g075260' => 'mtr', 'Medtr1g475250' => 'mtr', 'Medtr4g075450' => 'mtr', 'Medtr7g096300' => 'mtr', 'Medtr8g105110' => 'mtr', 'MELO3C006470.2' => 'cme', 'MELO3C006471.2' => 'cme', 'MELO3C020772.2' => 'cme', 'MELO3C026780.2' => 'cme', 'MELO3C026781.2' => 'cme', 'Migut.D00390' => 'egut', 'Migut.G00435' => 'egut', 'Migut.G00436' => 'egut', 'Migut.G00718' => 'egut', 'MSTRG.21891' => 'ama', 'MSTRG.26910' => 'ama', 'MSTRG.4099' => 'ama', 'MSTRG.9925' => 'ama', 'Nitab4.5_0000165g0010' => 'nta', 'Nitab4.5_0000209g0180' => 'nta', 'Nitab4.5_0000244g0440' => 'nta', 'Nitab4.5_0000525g0220' => 'nta', 'Nitab4.5_0001597g0020' => 'nta', 'Nitab4.5_0001878g0040' => 'nta', 'Nitab4.5_0001878g0060' => 'nta', 'Nitab4.5_0002838g0100' => 'nta', 'Nitab4.5_0002838g0120' => 'nta', 'Nitab4.5_0004798g0030' => 'nta', 'Nitab4.5_0005420g0010' => 'nta', 'Nitab4.5_0005507g0010' => 'nta', 'Nitab4.5_0005574g0020' => 'nta', 'Nitab4.5_0005838g0010' => 'nta', 'Nitab4.5_0010580g0020' => 'nta', 'Nn1g02599' => 'nnu', 'Nn1g02608' => 'nnu', 'Nn3g17742' => 'nnu', 'Nn3g19534' => 'nnu', 'Nn3g19535' => 'nnu', 'Oeu008790.1' => 'oeu', 'Oeu008792.1' => 'oeu', 'Oeu032590.1' => 'oeu', 'Oeu035349.1' => 'oeu', 'Oeu049791.1' => 'oeu', 'Os01g0774500' => 'osa', 'Os03g0628800' => 'osa', 'Os03g0798600' => 'osa', 'Os05g0508800' => 'osa', 'Peaxi162Scf00036g02018' => 'pax', 'Peaxi162Scf00578g00032' => 'pax', 'Peaxi162Scf00578g00317' => 'pax', 'Peaxi162Scf00785g00114' => 'pax', 'Peaxi162Scf00813g00119' => 'pax', 'Peaxi162Scf00906g00227' => 'pax', 'PGR004G0875' => 'pgr', 'PGR004G2424' => 'pgr', 'PGR031G1239' => 'pgr', 'PGR031G2474' => 'pgr', 'PGR044G0423' => 'pgr', 'PGSC0003DMG400001128' => 'stu', 'PGSC0003DMG400007336' => 'stu', 'PGSC0003DMG400016318' => 'stu', 'PGSC0003DMG400016319' => 'stu', 'PGSC0003DMG400018074' => 'stu', 'Phvul.001G157700' => 'pvu', 'Phvul.002G148550' => 'pvu', 'Phvul.002G320200' => 'pvu', 'Phvul.003G089200' => 'pvu', 'Phvul.007G126000' => 'pvu', 'Phvul.007G126100' => 'pvu', 'Phvul.007G178000' => 'pvu', 'Phvul.007G178200' => 'pvu', 'Potri.002G043000' => 'ptr', 'Potri.002G043200' => 'ptr', 'Potri.003G123750' => 'ptr', 'Potri.005G055401' => 'ptr', 'Potri.005G219700' => 'ptr', 'Potri.005G220000' => 'ptr', 'Potri.008G161901' => 'ptr', 'Potri.008G162000' => 'ptr', 'Potri.008G162400' => 'ptr', 'Potri.010G076900' => 'ptr', 'Pp3c12_9180' => 'ppa', 'Pp3c13_19770' => 'ppa', 'Pp3c14_22950' => 'ppa', 'Pp3c16_12160' => 'ppa', 'Pp3c27_7820' => 'ppa', 'Pp3c2_3490' => 'ppa', 'Pp3c3_23700' => 'ppa', 'Pp3c3_36520' => 'ppa', 'Pp3c4_15250' => 'ppa', 'PRCOL_00007002' => 'pco', 'Prupe.1G030600' => 'ppe', 'Prupe.1G030700' => 'ppe', 'Prupe.6G345200' => 'ppe', 'Prupe.8G230300' => 'ppe', 'Prupe.8G230500' => 'ppe', 'Psat3g059600' => 'psa', 'Psat5g200920' => 'psa', 'Psat6g056440' => 'psa', 'Psat6g057360' => 'psa', 'Psat6g134120' => 'psa', 'Psat6g134160' => 'psa', 'Psat7g008640' => 'psa', 'Psat7g185240' => 'psa', 'PSO017G1330' => 'pso', 'PSO063G6097' => 'pso', 'PSO170G0835' => 'pso', 'PSO170G2499' => 'pso', 'PSO210G5058' => 'pso', 'PSO210G6154' => 'pso', 'PSO585G0031' => 'pso', 'PSO832G0264' => 'pso', 'PSO832G4288' => 'pso', 'QL03p027355' => 'qlo', 'QL03p027430' => 'qlo', 'QL04p081380' => 'qlo', 'QL06p015642' => 'qlo', 'QL06p015650' => 'qlo', 'QL06p015686' => 'qlo', 'QL12p042927' => 'qlo', 'QL93p1863_0035' => 'qlo', 'RcHm_v2.0_Chr3g0450581' => 'rch', 'RcHm_v2.0_Chr4g0390371' => 'rch', 'RcHm_v2.0_Chr4g0390381' => 'rch', 'RcHm_v2.0_Chr4g0390491' => 'rch', 'RcHm_v2.0_Chr4g0390501' => 'rch', 'RcHm_v2.0_Chr6g0289231' => 'rch', 'Rhsim04G0190400' => 'rsi', 'Rhsim04G0190500' => 'rsi', 'Rhsim04G0190600' => 'rsi', 'Rhsim13G0031400' => 'rsi', 'Rhsim13G0165600' => 'rsi', 'RhsimUnG0114600' => 'rsi', 'RhsimUnG0114700' => 'rsi', 'Sabra02G0034800' => 'sbr', 'Sabra02G0035100' => 'sbr', 'Sabra05G0168600' => 'sbr', 'Sabra05G0168800' => 'sbr', 'Sabra08G0123700' => 'sbr', 'Sabra10G0031900' => 'sbr', 'Sabra13G0039000' => 'sbr', 'SalBow2G0782' => 'sbo', 'SalBow2G1403' => 'sbo', 'SalBow4G0074' => 'sbo', 'SalBow4G2635' => 'sbo', 'SalBow5G3010' => 'sbo', 'Sc05g0000870' => 'sci', 'Sc05g0000890' => 'sci', 'Sc13g0005000' => 'sci', 'Sc13g0005030' => 'sci', 'Sc19g0003790' => 'sci', 'Sc19g0003800' => 'sci', 'Sed0003467' => 'sed', 'Sed0009355' => 'sed', 'Sed0009894' => 'sed', 'Sed0011972' => 'sed', 'Sed0021483' => 'sed', 'Sed0021750' => 'sed', 'Sed0026279' => 'sed', 'SEGI_05312' => 'sgi', 'SEGI_10112' => 'sgi', 'SEGI_15835' => 'sgi', 'SEGI_30386' => 'sgi', 'SEGI_34122' => 'sgi', 'SEGI_35063' => 'sgi', 'SGA_v2.0_scaffold101G29794' => 'sas', 'SGA_v2.0_scaffold1G00573' => 'sas', 'SGA_v2.0_scaffold79G25637' => 'sas', 'SGA_v2.0_scaffold88G27283' => 'sas', 'SGA_v2.0_scaffold88G27285' => 'sas', 'SGA_v2.0_scaffold88G27331' => 'sas', 'SHI09937' => 'shi', 'SMO119G0302' => 'smo', 'SMO137G0231' => 'smo', 'SMO367G1151' => 'smo', 'Solyc02g082000.3' => 'sly', 'Solyc06g031670.3' => 'sly', 'Solyc06g053810.3' => 'sly', 'Solyc07g025457.1' => 'sly', 'Solyc08g059740.1' => 'sly', 'Solyc08g059750.3' => 'sly', 'Solyc09g083370.3' => 'sly', 'Solyc12g038950.3' => 'sly', 'Sopen02g026630' => 'spe', 'Sopen06g018930' => 'spe', 'Sopen06g018940' => 'spe', 'Sopen08g009460' => 'spe', 'Sopen09g032290' => 'spe', 'Sp1g03080' => 'spa', 'Sp1g03090' => 'spa', 'Sp1g05480' => 'spa', 'Sp2g07860' => 'spa', 'Sp2g08430' => 'spa', 'Sp2g08440' => 'spa', 'Sp2g26200' => 'spa', 'Sp4g13170' => 'spa', 'Sp6g33840' => 'spa', 'SpUn1204_0010' => 'spa', 'TAR365G0908' => 'tar', 'TAR381G1270' => 'tar', 'TAR381G1651' => 'tar', 'TAR625G1131' => 'tar', 'TAR633G0962' => 'tar', 'TAR633G1729' => 'tar', 'TAR633G1864' => 'tar', 'TAR636G0221' => 'tar', 'TAR636G0314' => 'tar', 'TAR636G3202' => 'tar', 'THA.LOC104800805' => 'tha', 'THA.LOC104801096' => 'tha', 'THA.LOC104801555' => 'tha', 'THA.LOC104808491' => 'tha', 'THA.LOC104808595' => 'tha', 'THA.LOC104815985' => 'tha', 'THA.LOC104822250' => 'tha', 'THA.LOC104826071' => 'tha', 'Thecc.01G265200' => 'tca', 'Thecc.01G265300' => 'tca', 'Thecc.01G265700' => 'tca', 'Thecc.03G109100' => 'tca', 'Thecc.04G245900' => 'tca', 'Thecc.04G246000' => 'tca', 'Thhalv10003334m.g' => 'esa', 'Thhalv10005508m.g' => 'esa', 'Thhalv10005643m.g' => 'esa', 'Thhalv10007316m.g' => 'esa', 'Thhalv10009006m.g' => 'esa', 'Thhalv10009309m.g' => 'esa', 'Thhalv10014917m.g' => 'esa', 'Thhalv10014919m.g' => 'esa', 'Thhalv10015393m.g' => 'esa', 'Thhalv10016515m.g' => 'esa', 'Thhalv10029242m.g' => 'esa', 'TPR.G16654' => 'tpr', 'TPR.G20589' => 'tpr', 'TPR.G23029' => 'tpr', 'TPR.G27731' => 'tpr', 'TPR.G28889' => 'tpr', 'TPR.G28899' => 'tpr', 'TPR.G30846' => 'tpr', 'TPR.G5452' => 'tpr', 'TPR.G5713' => 'tpr', 'TPR.G9046' => 'tpr', 'TPR.G9061' => 'tpr', 'TWI09G1075' => 'twi', 'TWI12G0806' => 'twi', 'TWI18G0108' => 'twi', 'TWI53G1361' => 'twi', 'TWI73G0185' => 'twi', 'TWI73G0427' => 'twi', 'unitig_37.g12001' => 'ugi', 'unitig_747.g21660' => 'ugi', 'unitig_748.g7232' => 'ugi', 'unitig_748.g7315' => 'ugi', 'unitig_85.g27262' => 'ugi', 'unitig_92.g28220' => 'ugi', 'vmacro02632' => 'vma', 'vmacro08410' => 'vma', 'vmacro08411' => 'vma', 'vmacro15407' => 'vma', 'VMungo0251G3619' => 'vmu', 'VMungo0720G1204' => 'vmu', 'VMungo0720G1918' => 'vmu', 'VMungo0720G2387' => 'vmu', 'VMungo0720G2961' => 'vmu', 'VMungo1215G2154' => 'vmu', 'VMungo1383G2411' => 'vmu', 'Zm00001eb051130' => 'zma', 'Zm00001eb116830' => 'zma', 'Zm00001eb116850' => 'zma', 'Zm00001eb151740' => 'zma', 'Zm00001eb292360' => 'zma', 'Zm00001eb301640' => 'zma' ), 'gf_id' => 'HOM05D000856', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000856' ), 'data_identifier' => 'HOM05D000856', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000856', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p00010' => 'bna', 'A03p04160' => 'bna', 'A03p17160' => 'bna', 'A04p23370' => 'bna', 'A05p14860' => 'bna', 'A08p37020' => 'bna', 'A09p08050' => 'bna', 'A09p66800' => 'bna', 'A09p67940' => 'bna', 'A10p02680' => 'bna', 'A10p05320' => 'bna', 'Aa31LG1G20560' => 'aar', 'Aa31LG1G20610' => 'aar', 'Aa31LG1G7810' => 'aar', 'Aa31LG5G3590' => 'aar', 'Aa31LG5G6140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3819' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4683' => 'aag', 'Actinidia04480' => 'ach', 'Actinidia05466' => 'ach', 'Actinidia08445' => 'ach', 'Actinidia21170' => 'ach', 'Actinidia24812' => 'ach', 'Actinidia24951' => 'ach', 'Actinidia40088' => 'ach', 'Ah.02g111660' => 'amhyb', 'Ah.11g048900' => 'amhyb', 'Ah.11g049910' => 'amhyb', 'AL1G13870' => 'aly', 'AL1G13880' => 'aly', 'AL1G16760' => 'aly', 'AL390U10020' => 'aly', 'AL4G25520' => 'aly', 'AL6G19890' => 'aly', 'AL6G19900' => 'aly', 'AL6G19910' => 'aly', 'AL8G40100' => 'aly', 'Aqoxy2G03562' => 'aox', 'Aqoxy5G00316' => 'aox', 'Aqoxy5G00926' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1628KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1H403S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2FU6SJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.882I6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8YRY2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YN1SN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AF70II' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZA8L1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F916KL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHRD8H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KTZ8QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S22EMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8M29T' => 'arhy', 'AT1G04270' => 'ath', 'AT1G04280' => 'ath', 'AT1G06750' => 'ath', 'AT1G33850' => 'ath', 'AT2G30630' => 'ath', 'AT5G09490' => 'ath', 'AT5G09500' => 'ath', 'AT5G09510' => 'ath', 'AT5G43640' => 'ath', 'AT5G63070' => 'ath', 'ATR0605G315' => 'atr', 'Atru.chr11.175' => 'acertr', 'Atru.chr11.653' => 'acertr', 'Atru.chr3.1616' => 'acertr', 'Atru.chr4.2230' => 'acertr', 'Atru.chr4.2232' => 'acertr', 'Atru.chr5.1598' => 'acertr', 'Atru.chr5.1600' => 'acertr', 'Atru.chr5.2188' => 'acertr', 'AUR62008326' => 'cqu', 'AUR62011922' => 'cqu', 'AUR62011924' => 'cqu', 'AUR62021771' => 'cqu', 'AUR62032237' => 'cqu', 'AUR62032240' => 'cqu', 'BcaB01g05572' => 'bca', 'BcaB02g10337' => 'bca', 'BcaB04g19944' => 'bca', 'BcaB05g21548' => 'bca', 'BcaB05g21549' => 'bca', 'BcaB05g23227' => 'bca', 'BcaB06g26256' => 'bca', 'BcaB06g26257' => 'bca', 'BcaB06g28379' => 'bca', 'BcaC02g11159' => 'bca', 'BcaC03g13258' => 'bca', 'BcaC03g13259' => 'bca', 'BcaC05g24456' => 'bca', 'BcaC05g24457' => 'bca', 'BcaC07g36922' => 'bca', 'BcaC07g36923' => 'bca', 'BcaC07g42050' => 'bca', 'BcaC07g42176' => 'bca', 'BcaC07g42195' => 'bca', 'BcaC07g42196' => 'bca', 'BcaNung06674' => 'bca', 'BolC2t06351H' => 'bol', 'BolC2t06352H' => 'bol', 'BolC3t12993H' => 'bol', 'BolC4t23525H' => 'bol', 'BolC4t27475H' => 'bol', 'BolC5t29025H' => 'bol', 'BolC5t29026H' => 'bol', 'BolC8t46898H' => 'bol', 'BolC8t46899H' => 'bol', 'BolC8t52630H' => 'bol', 'BolC8t52765H' => 'bol', 'BolC9t53824H' => 'bol', 'BraA03t09760Z' => 'bra', 'BraA03t10990Z' => 'bra', 'BraA05t20413Z' => 'bra', 'BraA08t35602Z' => 'bra', 'BraA09t36458Z' => 'bra', 'BraA09t42018Z' => 'bra', 'BraA09t42129Z' => 'bra', 'BraA10t42536Z' => 'bra', 'BraA10t42537Z' => 'bra', 'C01p10690' => 'bna', 'C02p03890' => 'bna', 'C02p03900' => 'bna', 'C03p04620' => 'bna', 'C04p19870' => 'bna', 'C04p59670' => 'bna', 'C05p02460' => 'bna', 'C05p02470' => 'bna', 'C08p00980' => 'bna', 'C08p00990' => 'bna', 'C08p51030' => 'bna', 'C08p52360' => 'bna', 'C09p09120' => 'bna', 'CAN.G19.15' => 'can', 'CAN.G251.10' => 'can', 'CAN.G251.9' => 'can', 'CAN.G398.24' => 'can', 'CAN.G410.32' => 'can', 'CAN.G881.2' => 'can', 'CANSAT01G3025' => 'cansat', 'CANSAT78G1211' => 'cansat', 'CANSAT78G1218' => 'cansat', 'CANSAT78G1521' => 'cansat', 'CANSAT78G1670' => 'cansat', 'CARHR003600' => 'chi', 'CARHR003610' => 'chi', 'CARHR006290' => 'chi', 'CARHR006430' => 'chi', 'CARHR124110' => 'chi', 'CARHR203870' => 'chi', 'CARHR203880' => 'chi', 'CARHR203890' => 'chi', 'CARHR276880' => 'chi', 'Carub.0001s0346' => 'cru', 'Carub.0001s0347' => 'cru', 'Carub.0001s0607' => 'cru', 'Carub.0003s2768' => 'cru', 'Carub.0003s2769' => 'cru', 'Carub.0004s1178' => 'cru', 'Carub.0006s0806' => 'cru', 'Carub.0006s0807' => 'cru', 'Carub.0006s0808' => 'cru', 'Carub.0008s0501' => 'cru', 'Carub.0008s2379' => 'cru', 'Ca_08655_v3' => 'car', 'Ca_08922_v3' => 'car', 'Ca_08923_v3' => 'car', 'Ca_09119_v3' => 'car', 'Ca_09703_v3' => 'car', 'Ca_09705_v3' => 'car', 'Ca_09835_v3' => 'car', 'Ca_26403_v3' => 'car', 'Ca_30719_v3' => 'car', 'CBR_g17958' => 'cbr', 'CBR_g40516' => 'cbr', 'Cc00_g05350' => 'ccan', 'Cc01_g18690' => 'ccan', 'Cc03_g04830' => 'ccan', 'Cc03_g04850' => 'ccan', 'CDE02G4469' => 'cde', 'CDE06G0883' => 'cde', 'CDE06G1295' => 'cde', 'CDE06G1390' => 'cde', 'CDE07G0584' => 'cde', 'CDE07G1084' => 'cde', 'CDE08G1259' => 'cde', 'Cfa002341' => 'cfa', 'Cfa024337' => 'cfa', 'Ciclev10004749m.g' => 'ccl', 'Ciclev10006127m.g' => 'ccl', 'Ciclev10019720m.g' => 'ccl', 'Ciclev10022652m.g' => 'ccl', 'CiPaw.01G190400' => 'cil', 'CiPaw.01G190500' => 'cil', 'CiPaw.02G116400' => 'cil', 'CiPaw.02G116500' => 'cil', 'CiPaw.04G183000' => 'cil', 'CiPaw.04G183300' => 'cil', 'ClCG05G004610' => 'cla', 'ClCG05G004620' => 'cla', 'ClCG06G006730' => 'cla', 'ClCG06G006740' => 'cla', 'ClCG11G003690' => 'cla', 'COL.COLO4_08276' => 'col', 'COL.COLO4_08277' => 'col', 'COL.COLO4_15787' => 'col', 'COL.COLO4_15789' => 'col', 'Cpa.g.c44815' => 'cpa', 'Cpa.g.sc52.144' => 'cpa', 'Cpa.g.sc58.46' => 'cpa', 'Cpa.g.sc58.47' => 'cpa', 'Cre08.g360900' => 'cre', 'CsaV3_2G013030' => 'csa', 'CsaV3_2G013050' => 'csa', 'CsaV3_2G015620' => 'csa', 'CsaV3_3G012590' => 'csa', 'CsaV3_3G012600' => 'csa', 'CSS0001641' => 'camsi', 'CSS0008310' => 'camsi', 'CSS0013011' => 'camsi', 'CSS0017147' => 'camsi', 'CSS0022970' => 'camsi', 'CSS0025655' => 'camsi', 'CSS0028665' => 'camsi', 'CSS0029117' => 'camsi', 'CSS0032024' => 'camsi', 'CSS0039681' => 'camsi', 'CSS0046516' => 'camsi', 'CSS0050307' => 'camsi', 'DCAR_005871' => 'dca', 'DCAR_007342' => 'dca', 'DCAR_024228' => 'dca', 'DCAR_027277' => 'dca', 'DCAR_030718' => 'dca', 'Dinv20287' => 'din', 'Dinv22461' => 'din', 'Dinv22464' => 'din', 'Dinv29912' => 'din', 'Dinv29913' => 'din', 'Dinv34580' => 'din', 'Dinv34582' => 'din', 'Dinv44632' => 'din', 'Duzib052G0266' => 'dzi', 'Duzib133G0907' => 'dzi', 'Duzib133G1034' => 'dzi', 'Duzib138G0207' => 'dzi', 'Duzib138G0491' => 'dzi', 'Duzib151G0812' => 'dzi', 'Duzib151G1166' => 'dzi', 'Duzib168G0192' => 'dzi', 'Duzib211G0077' => 'dzi', 'Duzib212G0429' => 'dzi', 'Duzib212G0472' => 'dzi', 'ECA233G2617' => 'eca', 'ECA236G4188' => 'eca', 'ECA240G0936' => 'eca', 'ECA240G1129' => 'eca', 'ECA247G0623' => 'eca', 'EL10Ac5g10451' => 'bvu', 'EL10Ac5g10453' => 'bvu', 'EL10Ac5g10894' => 'bvu', 'Eucgr.H00192' => 'egr', 'Eucgr.H00193' => 'egr', 'Eucgr.H00194' => 'egr', 'Eucgr.J01562' => 'egr', 'Eucgr.K03301' => 'egr', 'FAN02G0632' => 'fan', 'FAN05G5378' => 'fan', 'FAN09G3247' => 'fan', 'FAN12G0435' => 'fan', 'FAN12G2426' => 'fan', 'FAN14G1707' => 'fan', 'FAN14G4725' => 'fan', 'FAN15G2071' => 'fan', 'FAN17G3065' => 'fan', 'FAN19G1376' => 'fan', 'FAN20G0354' => 'fan', 'FAN20G2429' => 'fan', 'FAN20G2658' => 'fan', 'FAN24G2343' => 'fan', 'FAN27G2362' => 'fan', 'FAN28G1765' => 'fan', 'FvH4_1g16020' => 'fve', 'FvH4_2g04890' => 'fve', 'FvH4_2g22270' => 'fve', 'FvH4_4g02630' => 'fve', 'FvH4_4g02640' => 'fve', 'FvH4_6g02650' => 'fve', 'Glyma.02G140600' => 'gma', 'Glyma.03G159900' => 'gma', 'Glyma.05G234800' => 'gma', 'Glyma.07G269600' => 'gma', 'Glyma.08G042300' => 'gma', 'Glyma.10G033500' => 'gma', 'Glyma.10G185200' => 'gma', 'Glyma.17G004300' => 'gma', 'Glyma.19G161900' => 'gma', 'Glyma.20G205100' => 'gma', 'Glyma.20G205200' => 'gma', 'Gohir.A01G139101' => 'ghi', 'Gohir.A02G035600' => 'ghi', 'Gohir.A02G117901' => 'ghi', 'Gohir.A07G210100' => 'ghi', 'Gohir.A07G210200' => 'ghi', 'Gohir.A08G061100' => 'ghi', 'Gohir.A09G223000' => 'ghi', 'Gohir.A09G223100' => 'ghi', 'Gohir.A10G113900' => 'ghi', 'Gohir.A10G114000' => 'ghi', 'Gohir.D02G042300' => 'ghi', 'Gohir.D07G216100' => 'ghi', 'Gohir.D07G216200' => 'ghi', 'Gohir.D08G070400' => 'ghi', 'Gohir.D09G225000' => 'ghi', 'Gohir.D09G225100' => 'ghi', 'Gohir.D10G152300' => 'ghi', 'Gohir.D10G153200' => 'ghi', 'Gohir.D11G133701' => 'ghi', 'Gorai.004G074100' => 'gra', 'Gorai.005G046800' => 'gra', 'Gorai.006G246500' => 'gra', 'Gorai.006G246600' => 'gra', 'Gorai.007G142900' => 'gra', 'Gorai.011G171000' => 'gra', 'Gorai.011G171100' => 'gra', 'Gorai.013G104300' => 'gra', 'Gorai.013G104400' => 'gra', 'GSVIVG01000754001' => 'vvi', 'GSVIVG01000756001' => 'vvi', 'GSVIVG01010903001' => 'vvi', 'GSVIVG01017623001' => 'vvi', 'GSVIVG01018113001' => 'vvi', 'GSVIVG01018116001' => 'vvi', 'GSVIVG01018118001' => 'vvi', 'HanXRQChr03g0076211' => 'han', 'HanXRQChr03g0092431' => 'han', 'HanXRQChr03g0092441' => 'han', 'HanXRQChr03g0092591' => 'han', 'HanXRQChr03g0092671' => 'han', 'HanXRQChr03g0092681' => 'han', 'HanXRQChr03g0092691' => 'han', 'HanXRQChr03g0092701' => 'han', 'HanXRQChr03g0092721' => 'han', 'HanXRQChr03g0092731' => 'han', 'HanXRQChr04g0113681' => 'han', 'HanXRQChr10g0281371' => 'han', 'HanXRQChr11g0337141' => 'han', 'HanXRQChr13g0424521' => 'han', 'HanXRQChr13g0424531' => 'han', 'HanXRQChr13g0424541' => 'han', 'HanXRQChr16g0498221' => 'han', 'Haze_04377' => 'cav', 'Haze_11298' => 'cav', 'Haze_24547' => 'cav', 'Haze_24550' => 'cav', 'Haze_26587' => 'cav', 'Hma1.2p1_0650F.1_g195410' => 'hma', 'Hma1.2p1_0893F.1_g233470' => 'hma', 'HPP92_006508' => 'vpl', 'HPP92_024780' => 'vpl', 'Hund02688' => 'sun', 'Hund09380' => 'sun', 'Hund09381' => 'sun', 'Hund09832' => 'sun', 'Hund09833' => 'sun', 'Hund11351' => 'sun', 'Hund11513' => 'sun', 'Lalb_Chr06g0162591' => 'lal', 'Lalb_Chr06g0162601' => 'lal', 'Lalb_Chr06g0169321' => 'lal', 'Lalb_Chr09g0330951' => 'lal', 'Lalb_Chr16g0387631' => 'lal', 'Lalb_Chr21g0306241' => 'lal', 'Lalb_Chr25g0290051' => 'lal', 'Lalb_Chr25g0290061' => 'lal', 'Lalb_Chr25g0290071' => 'lal', 'Lj1g0003876' => 'lja', 'Lj1P1207T36' => 'lonja', 'Lj2C1156G12' => 'lonja', 'Lj3A793G39' => 'lonja', 'Lj3C580G2' => 'lonja', 'Lj3C780G2' => 'lonja', 'Lj3C780T4' => 'lonja', 'Lj3C793G9' => 'lonja', 'Lj4g0012960' => 'lja', 'Lj5g0021252' => 'lja', 'Lj5g0021484' => 'lja', 'Lj5g0024528' => 'lja', 'Lj6A399T12' => 'lonja', 'Lj6A656G65' => 'lonja', 'Lsat_1_v5_gn_3_125500' => 'lsa', 'Lsat_1_v5_gn_3_125540' => 'lsa', 'Lsat_1_v5_gn_5_72701' => 'lsa', 'Lsat_1_v5_gn_8_91560' => 'lsa', 'Lsat_1_v5_gn_9_9640' => 'lsa', 'Manes.01G200600' => 'mes', 'Manes.01G200700' => 'mes', 'Manes.03G168900' => 'mes', 'Manes.03G169000' => 'mes', 'Manes.05G085801' => 'mes', 'Manes.05G086200' => 'mes', 'Manes.15G036700' => 'mes', 'Manes.15G036900' => 'mes', 'Mapoly0004s0172' => 'mpo', 'Mapoly0023s0001' => 'mpo', 'Mapoly0142s0012' => 'mpo', 'MBI01_g32854_MAGBIO' => 'mbi', 'MBI11_g24427_MAGBIO' => 'mbi', 'MBI11_g47319_MAGBIO' => 'mbi', 'MCO01G433' => 'mco', 'MD00G1187800' => 'mdo', 'MD04G1226500' => 'mdo', 'MD05G1203900' => 'mdo', 'MD10G1191100' => 'mdo', 'MD12G1243500' => 'mdo', 'MD13G1207000' => 'mdo', 'MD13G1207100' => 'mdo', 'MD16G1208600' => 'mdo', 'Medtr1g050352' => 'mtr', 'Medtr1g070385' => 'mtr', 'Medtr1g070450' => 'mtr', 'Medtr1g075200' => 'mtr', 'Medtr1g075250' => 'mtr', 'Medtr1g075260' => 'mtr', 'Medtr1g475250' => 'mtr', 'Medtr4g075450' => 'mtr', 'Medtr7g096300' => 'mtr', 'Medtr8g105110' => 'mtr', 'MELO3C006470.2' => 'cme', 'MELO3C006471.2' => 'cme', 'MELO3C020772.2' => 'cme', 'MELO3C026780.2' => 'cme', 'MELO3C026781.2' => 'cme', 'Migut.D00390' => 'egut', 'Migut.G00435' => 'egut', 'Migut.G00436' => 'egut', 'Migut.G00718' => 'egut', 'MSTRG.21891' => 'ama', 'MSTRG.26910' => 'ama', 'MSTRG.4099' => 'ama', 'MSTRG.9925' => 'ama', 'Nitab4.5_0000165g0010' => 'nta', 'Nitab4.5_0000209g0180' => 'nta', 'Nitab4.5_0000244g0440' => 'nta', 'Nitab4.5_0000525g0220' => 'nta', 'Nitab4.5_0001597g0020' => 'nta', 'Nitab4.5_0001878g0040' => 'nta', 'Nitab4.5_0001878g0060' => 'nta', 'Nitab4.5_0002838g0100' => 'nta', 'Nitab4.5_0002838g0120' => 'nta', 'Nitab4.5_0004798g0030' => 'nta', 'Nitab4.5_0005420g0010' => 'nta', 'Nitab4.5_0005507g0010' => 'nta', 'Nitab4.5_0005574g0020' => 'nta', 'Nitab4.5_0005838g0010' => 'nta', 'Nitab4.5_0010580g0020' => 'nta', 'Nn1g02599' => 'nnu', 'Nn1g02608' => 'nnu', 'Nn3g17742' => 'nnu', 'Nn3g19534' => 'nnu', 'Nn3g19535' => 'nnu', 'Oeu008790.1' => 'oeu', 'Oeu008792.1' => 'oeu', 'Oeu032590.1' => 'oeu', 'Oeu035349.1' => 'oeu', 'Oeu049791.1' => 'oeu', 'Os01g0774500' => 'osa', 'Os03g0628800' => 'osa', 'Os03g0798600' => 'osa', 'Os05g0508800' => 'osa', 'Peaxi162Scf00036g02018' => 'pax', 'Peaxi162Scf00578g00032' => 'pax', 'Peaxi162Scf00578g00317' => 'pax', 'Peaxi162Scf00785g00114' => 'pax', 'Peaxi162Scf00813g00119' => 'pax', 'Peaxi162Scf00906g00227' => 'pax', 'PGR004G0875' => 'pgr', 'PGR004G2424' => 'pgr', 'PGR031G1239' => 'pgr', 'PGR031G2474' => 'pgr', 'PGR044G0423' => 'pgr', 'PGSC0003DMG400001128' => 'stu', 'PGSC0003DMG400007336' => 'stu', 'PGSC0003DMG400016318' => 'stu', 'PGSC0003DMG400016319' => 'stu', 'PGSC0003DMG400018074' => 'stu', 'Phvul.001G157700' => 'pvu', 'Phvul.002G148550' => 'pvu', 'Phvul.002G320200' => 'pvu', 'Phvul.003G089200' => 'pvu', 'Phvul.007G126000' => 'pvu', 'Phvul.007G126100' => 'pvu', 'Phvul.007G178000' => 'pvu', 'Phvul.007G178200' => 'pvu', 'Potri.002G043000' => 'ptr', 'Potri.002G043200' => 'ptr', 'Potri.003G123750' => 'ptr', 'Potri.005G055401' => 'ptr', 'Potri.005G219700' => 'ptr', 'Potri.005G220000' => 'ptr', 'Potri.008G161901' => 'ptr', 'Potri.008G162000' => 'ptr', 'Potri.008G162400' => 'ptr', 'Potri.010G076900' => 'ptr', 'Pp3c12_9180' => 'ppa', 'Pp3c13_19770' => 'ppa', 'Pp3c14_22950' => 'ppa', 'Pp3c16_12160' => 'ppa', 'Pp3c27_7820' => 'ppa', 'Pp3c2_3490' => 'ppa', 'Pp3c3_23700' => 'ppa', 'Pp3c3_36520' => 'ppa', 'Pp3c4_15250' => 'ppa', 'PRCOL_00007002' => 'pco', 'Prupe.1G030600' => 'ppe', 'Prupe.1G030700' => 'ppe', 'Prupe.6G345200' => 'ppe', 'Prupe.8G230300' => 'ppe', 'Prupe.8G230500' => 'ppe', 'Psat3g059600' => 'psa', 'Psat5g200920' => 'psa', 'Psat6g056440' => 'psa', 'Psat6g057360' => 'psa', 'Psat6g134120' => 'psa', 'Psat6g134160' => 'psa', 'Psat7g008640' => 'psa', 'Psat7g185240' => 'psa', 'PSO017G1330' => 'pso', 'PSO063G6097' => 'pso', 'PSO170G0835' => 'pso', 'PSO170G2499' => 'pso', 'PSO210G5058' => 'pso', 'PSO210G6154' => 'pso', 'PSO585G0031' => 'pso', 'PSO832G0264' => 'pso', 'PSO832G4288' => 'pso', 'QL03p027355' => 'qlo', 'QL03p027430' => 'qlo', 'QL04p081380' => 'qlo', 'QL06p015642' => 'qlo', 'QL06p015650' => 'qlo', 'QL06p015686' => 'qlo', 'QL12p042927' => 'qlo', 'QL93p1863_0035' => 'qlo', 'RcHm_v2.0_Chr3g0450581' => 'rch', 'RcHm_v2.0_Chr4g0390371' => 'rch', 'RcHm_v2.0_Chr4g0390381' => 'rch', 'RcHm_v2.0_Chr4g0390491' => 'rch', 'RcHm_v2.0_Chr4g0390501' => 'rch', 'RcHm_v2.0_Chr6g0289231' => 'rch', 'Rhsim04G0190400' => 'rsi', 'Rhsim04G0190500' => 'rsi', 'Rhsim04G0190600' => 'rsi', 'Rhsim13G0031400' => 'rsi', 'Rhsim13G0165600' => 'rsi', 'RhsimUnG0114600' => 'rsi', 'RhsimUnG0114700' => 'rsi', 'Sabra02G0034800' => 'sbr', 'Sabra02G0035100' => 'sbr', 'Sabra05G0168600' => 'sbr', 'Sabra05G0168800' => 'sbr', 'Sabra08G0123700' => 'sbr', 'Sabra10G0031900' => 'sbr', 'Sabra13G0039000' => 'sbr', 'SalBow2G0782' => 'sbo', 'SalBow2G1403' => 'sbo', 'SalBow4G0074' => 'sbo', 'SalBow4G2635' => 'sbo', 'SalBow5G3010' => 'sbo', 'Sc05g0000870' => 'sci', 'Sc05g0000890' => 'sci', 'Sc13g0005000' => 'sci', 'Sc13g0005030' => 'sci', 'Sc19g0003790' => 'sci', 'Sc19g0003800' => 'sci', 'Sed0003467' => 'sed', 'Sed0009355' => 'sed', 'Sed0009894' => 'sed', 'Sed0011972' => 'sed', 'Sed0021483' => 'sed', 'Sed0021750' => 'sed', 'Sed0026279' => 'sed', 'SEGI_05312' => 'sgi', 'SEGI_10112' => 'sgi', 'SEGI_15835' => 'sgi', 'SEGI_30386' => 'sgi', 'SEGI_34122' => 'sgi', 'SEGI_35063' => 'sgi', 'SGA_v2.0_scaffold101G29794' => 'sas', 'SGA_v2.0_scaffold1G00573' => 'sas', 'SGA_v2.0_scaffold79G25637' => 'sas', 'SGA_v2.0_scaffold88G27283' => 'sas', 'SGA_v2.0_scaffold88G27285' => 'sas', 'SGA_v2.0_scaffold88G27331' => 'sas', 'SHI09937' => 'shi', 'SMO119G0302' => 'smo', 'SMO137G0231' => 'smo', 'SMO367G1151' => 'smo', 'Solyc02g082000.3' => 'sly', 'Solyc06g031670.3' => 'sly', 'Solyc06g053810.3' => 'sly', 'Solyc07g025457.1' => 'sly', 'Solyc08g059740.1' => 'sly', 'Solyc08g059750.3' => 'sly', 'Solyc09g083370.3' => 'sly', 'Solyc12g038950.3' => 'sly', 'Sopen02g026630' => 'spe', 'Sopen06g018930' => 'spe', 'Sopen06g018940' => 'spe', 'Sopen08g009460' => 'spe', 'Sopen09g032290' => 'spe', 'Sp1g03080' => 'spa', 'Sp1g03090' => 'spa', 'Sp1g05480' => 'spa', 'Sp2g07860' => 'spa', 'Sp2g08430' => 'spa', 'Sp2g08440' => 'spa', 'Sp2g26200' => 'spa', 'Sp4g13170' => 'spa', 'Sp6g33840' => 'spa', 'SpUn1204_0010' => 'spa', 'TAR365G0908' => 'tar', 'TAR381G1270' => 'tar', 'TAR381G1651' => 'tar', 'TAR625G1131' => 'tar', 'TAR633G0962' => 'tar', 'TAR633G1729' => 'tar', 'TAR633G1864' => 'tar', 'TAR636G0221' => 'tar', 'TAR636G0314' => 'tar', 'TAR636G3202' => 'tar', 'THA.LOC104800805' => 'tha', 'THA.LOC104801096' => 'tha', 'THA.LOC104801555' => 'tha', 'THA.LOC104808491' => 'tha', 'THA.LOC104808595' => 'tha', 'THA.LOC104815985' => 'tha', 'THA.LOC104822250' => 'tha', 'THA.LOC104826071' => 'tha', 'Thecc.01G265200' => 'tca', 'Thecc.01G265300' => 'tca', 'Thecc.01G265700' => 'tca', 'Thecc.03G109100' => 'tca', 'Thecc.04G245900' => 'tca', 'Thecc.04G246000' => 'tca', 'Thhalv10003334m.g' => 'esa', 'Thhalv10005508m.g' => 'esa', 'Thhalv10005643m.g' => 'esa', 'Thhalv10007316m.g' => 'esa', 'Thhalv10009006m.g' => 'esa', 'Thhalv10009309m.g' => 'esa', 'Thhalv10014917m.g' => 'esa', 'Thhalv10014919m.g' => 'esa', 'Thhalv10015393m.g' => 'esa', 'Thhalv10016515m.g' => 'esa', 'Thhalv10029242m.g' => 'esa', 'TPR.G16654' => 'tpr', 'TPR.G20589' => 'tpr', 'TPR.G23029' => 'tpr', 'TPR.G27731' => 'tpr', 'TPR.G28889' => 'tpr', 'TPR.G28899' => 'tpr', 'TPR.G30846' => 'tpr', 'TPR.G5452' => 'tpr', 'TPR.G5713' => 'tpr', 'TPR.G9046' => 'tpr', 'TPR.G9061' => 'tpr', 'TWI09G1075' => 'twi', 'TWI12G0806' => 'twi', 'TWI18G0108' => 'twi', 'TWI53G1361' => 'twi', 'TWI73G0185' => 'twi', 'TWI73G0427' => 'twi', 'unitig_37.g12001' => 'ugi', 'unitig_747.g21660' => 'ugi', 'unitig_748.g7232' => 'ugi', 'unitig_748.g7315' => 'ugi', 'unitig_85.g27262' => 'ugi', 'unitig_92.g28220' => 'ugi', 'vmacro02632' => 'vma', 'vmacro08410' => 'vma', 'vmacro08411' => 'vma', 'vmacro15407' => 'vma', 'VMungo0251G3619' => 'vmu', 'VMungo0720G1204' => 'vmu', 'VMungo0720G1918' => 'vmu', 'VMungo0720G2387' => 'vmu', 'VMungo0720G2961' => 'vmu', 'VMungo1215G2154' => 'vmu', 'VMungo1383G2411' => 'vmu', 'Zm00001eb051130' => 'zma', 'Zm00001eb116830' => 'zma', 'Zm00001eb116850' => 'zma', 'Zm00001eb151740' => 'zma', 'Zm00001eb292360' => 'zma', 'Zm00001eb301640' => 'zma' ) $gf_id = 'HOM05D000856' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000856' ) $data_identifier = 'HOM05D000856' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 13, 'ath' => (int) 10, 'atr' => (int) 1, 'acertr' => (int) 8, 'cqu' => (int) 6, 'bca' => (int) 21, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 11, 'car' => (int) 9, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 8, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 5, 'fan' => (int) 16, 'fve' => (int) 6, 'gma' => (int) 11, 'ghi' => (int) 19, 'gra' => (int) 9, 'vvi' => (int) 7, 'han' => (int) 17, 'cav' => (int) 5, 'hma' => (int) 2, 'vpl' => (int) 2, 'sun' => (int) 7, 'lal' => (int) 9, 'lja' => (int) 5, 'lonja' => (int) 9, 'lsa' => (int) 5, 'mes' => (int) 8, 'mpo' => (int) 3, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 10, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 15, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 9, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 9, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 6, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 5, 'spa' => (int) 10, 'tar' => (int) 10, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 11, 'tpr' => (int) 11, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 4, 'vmu' => (int) 7, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb301640' $species_info = array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ) $local_species = 'sas' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000856', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p00010' => 'bna', 'A03p04160' => 'bna', 'A03p17160' => 'bna', 'A04p23370' => 'bna', 'A05p14860' => 'bna', 'A08p37020' => 'bna', 'A09p08050' => 'bna', 'A09p66800' => 'bna', 'A09p67940' => 'bna', 'A10p02680' => 'bna', 'A10p05320' => 'bna', 'Aa31LG1G20560' => 'aar', 'Aa31LG1G20610' => 'aar', 'Aa31LG1G7810' => 'aar', 'Aa31LG5G3590' => 'aar', 'Aa31LG5G6140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3819' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4683' => 'aag', 'Actinidia04480' => 'ach', 'Actinidia05466' => 'ach', 'Actinidia08445' => 'ach', 'Actinidia21170' => 'ach', 'Actinidia24812' => 'ach', 'Actinidia24951' => 'ach', 'Actinidia40088' => 'ach', 'Ah.02g111660' => 'amhyb', 'Ah.11g048900' => 'amhyb', 'Ah.11g049910' => 'amhyb', 'AL1G13870' => 'aly', 'AL1G13880' => 'aly', 'AL1G16760' => 'aly', 'AL390U10020' => 'aly', 'AL4G25520' => 'aly', 'AL6G19890' => 'aly', 'AL6G19900' => 'aly', 'AL6G19910' => 'aly', 'AL8G40100' => 'aly', 'Aqoxy2G03562' => 'aox', 'Aqoxy5G00316' => 'aox', 'Aqoxy5G00926' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1628KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1H403S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2FU6SJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.882I6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8YRY2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YN1SN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AF70II' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZA8L1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F916KL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHRD8H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KTZ8QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S22EMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8M29T' => 'arhy', 'AT1G04270' => 'ath', 'AT1G04280' => 'ath', 'AT1G06750' => 'ath', 'AT1G33850' => 'ath', 'AT2G30630' => 'ath', 'AT5G09490' => 'ath', 'AT5G09500' => 'ath', 'AT5G09510' => 'ath', 'AT5G43640' => 'ath', 'AT5G63070' => 'ath', 'ATR0605G315' => 'atr', 'Atru.chr11.175' => 'acertr', 'Atru.chr11.653' => 'acertr', 'Atru.chr3.1616' => 'acertr', 'Atru.chr4.2230' => 'acertr', 'Atru.chr4.2232' => 'acertr', 'Atru.chr5.1598' => 'acertr', 'Atru.chr5.1600' => 'acertr', 'Atru.chr5.2188' => 'acertr', 'AUR62008326' => 'cqu', 'AUR62011922' => 'cqu', 'AUR62011924' => 'cqu', 'AUR62021771' => 'cqu', 'AUR62032237' => 'cqu', 'AUR62032240' => 'cqu', 'BcaB01g05572' => 'bca', 'BcaB02g10337' => 'bca', 'BcaB04g19944' => 'bca', 'BcaB05g21548' => 'bca', 'BcaB05g21549' => 'bca', 'BcaB05g23227' => 'bca', 'BcaB06g26256' => 'bca', 'BcaB06g26257' => 'bca', 'BcaB06g28379' => 'bca', 'BcaC02g11159' => 'bca', 'BcaC03g13258' => 'bca', 'BcaC03g13259' => 'bca', 'BcaC05g24456' => 'bca', 'BcaC05g24457' => 'bca', 'BcaC07g36922' => 'bca', 'BcaC07g36923' => 'bca', 'BcaC07g42050' => 'bca', 'BcaC07g42176' => 'bca', 'BcaC07g42195' => 'bca', 'BcaC07g42196' => 'bca', 'BcaNung06674' => 'bca', 'BolC2t06351H' => 'bol', 'BolC2t06352H' => 'bol', 'BolC3t12993H' => 'bol', 'BolC4t23525H' => 'bol', 'BolC4t27475H' => 'bol', 'BolC5t29025H' => 'bol', 'BolC5t29026H' => 'bol', 'BolC8t46898H' => 'bol', 'BolC8t46899H' => 'bol', 'BolC8t52630H' => 'bol', 'BolC8t52765H' => 'bol', 'BolC9t53824H' => 'bol', 'BraA03t09760Z' => 'bra', 'BraA03t10990Z' => 'bra', 'BraA05t20413Z' => 'bra', 'BraA08t35602Z' => 'bra', 'BraA09t36458Z' => 'bra', 'BraA09t42018Z' => 'bra', 'BraA09t42129Z' => 'bra', 'BraA10t42536Z' => 'bra', 'BraA10t42537Z' => 'bra', 'C01p10690' => 'bna', 'C02p03890' => 'bna', 'C02p03900' => 'bna', 'C03p04620' => 'bna', 'C04p19870' => 'bna', 'C04p59670' => 'bna', 'C05p02460' => 'bna', 'C05p02470' => 'bna', 'C08p00980' => 'bna', 'C08p00990' => 'bna', 'C08p51030' => 'bna', 'C08p52360' => 'bna', 'C09p09120' => 'bna', 'CAN.G19.15' => 'can', 'CAN.G251.10' => 'can', 'CAN.G251.9' => 'can', 'CAN.G398.24' => 'can', 'CAN.G410.32' => 'can', 'CAN.G881.2' => 'can', 'CANSAT01G3025' => 'cansat', 'CANSAT78G1211' => 'cansat', 'CANSAT78G1218' => 'cansat', 'CANSAT78G1521' => 'cansat', 'CANSAT78G1670' => 'cansat', 'CARHR003600' => 'chi', 'CARHR003610' => 'chi', 'CARHR006290' => 'chi', 'CARHR006430' => 'chi', 'CARHR124110' => 'chi', 'CARHR203870' => 'chi', 'CARHR203880' => 'chi', 'CARHR203890' => 'chi', 'CARHR276880' => 'chi', 'Carub.0001s0346' => 'cru', 'Carub.0001s0347' => 'cru', 'Carub.0001s0607' => 'cru', 'Carub.0003s2768' => 'cru', 'Carub.0003s2769' => 'cru', 'Carub.0004s1178' => 'cru', 'Carub.0006s0806' => 'cru', 'Carub.0006s0807' => 'cru', 'Carub.0006s0808' => 'cru', 'Carub.0008s0501' => 'cru', 'Carub.0008s2379' => 'cru', 'Ca_08655_v3' => 'car', 'Ca_08922_v3' => 'car', 'Ca_08923_v3' => 'car', 'Ca_09119_v3' => 'car', 'Ca_09703_v3' => 'car', 'Ca_09705_v3' => 'car', 'Ca_09835_v3' => 'car', 'Ca_26403_v3' => 'car', 'Ca_30719_v3' => 'car', 'CBR_g17958' => 'cbr', 'CBR_g40516' => 'cbr', 'Cc00_g05350' => 'ccan', 'Cc01_g18690' => 'ccan', 'Cc03_g04830' => 'ccan', 'Cc03_g04850' => 'ccan', 'CDE02G4469' => 'cde', 'CDE06G0883' => 'cde', 'CDE06G1295' => 'cde', 'CDE06G1390' => 'cde', 'CDE07G0584' => 'cde', 'CDE07G1084' => 'cde', 'CDE08G1259' => 'cde', 'Cfa002341' => 'cfa', 'Cfa024337' => 'cfa', 'Ciclev10004749m.g' => 'ccl', 'Ciclev10006127m.g' => 'ccl', 'Ciclev10019720m.g' => 'ccl', 'Ciclev10022652m.g' => 'ccl', 'CiPaw.01G190400' => 'cil', 'CiPaw.01G190500' => 'cil', 'CiPaw.02G116400' => 'cil', 'CiPaw.02G116500' => 'cil', 'CiPaw.04G183000' => 'cil', 'CiPaw.04G183300' => 'cil', 'ClCG05G004610' => 'cla', 'ClCG05G004620' => 'cla', 'ClCG06G006730' => 'cla', 'ClCG06G006740' => 'cla', 'ClCG11G003690' => 'cla', 'COL.COLO4_08276' => 'col', 'COL.COLO4_08277' => 'col', 'COL.COLO4_15787' => 'col', 'COL.COLO4_15789' => 'col', 'Cpa.g.c44815' => 'cpa', 'Cpa.g.sc52.144' => 'cpa', 'Cpa.g.sc58.46' => 'cpa', 'Cpa.g.sc58.47' => 'cpa', 'Cre08.g360900' => 'cre', 'CsaV3_2G013030' => 'csa', 'CsaV3_2G013050' => 'csa', 'CsaV3_2G015620' => 'csa', 'CsaV3_3G012590' => 'csa', 'CsaV3_3G012600' => 'csa', 'CSS0001641' => 'camsi', 'CSS0008310' => 'camsi', 'CSS0013011' => 'camsi', 'CSS0017147' => 'camsi', 'CSS0022970' => 'camsi', 'CSS0025655' => 'camsi', 'CSS0028665' => 'camsi', 'CSS0029117' => 'camsi', 'CSS0032024' => 'camsi', 'CSS0039681' => 'camsi', 'CSS0046516' => 'camsi', 'CSS0050307' => 'camsi', 'DCAR_005871' => 'dca', 'DCAR_007342' => 'dca', 'DCAR_024228' => 'dca', 'DCAR_027277' => 'dca', 'DCAR_030718' => 'dca', 'Dinv20287' => 'din', 'Dinv22461' => 'din', 'Dinv22464' => 'din', 'Dinv29912' => 'din', 'Dinv29913' => 'din', 'Dinv34580' => 'din', 'Dinv34582' => 'din', 'Dinv44632' => 'din', 'Duzib052G0266' => 'dzi', 'Duzib133G0907' => 'dzi', 'Duzib133G1034' => 'dzi', 'Duzib138G0207' => 'dzi', 'Duzib138G0491' => 'dzi', 'Duzib151G0812' => 'dzi', 'Duzib151G1166' => 'dzi', 'Duzib168G0192' => 'dzi', 'Duzib211G0077' => 'dzi', 'Duzib212G0429' => 'dzi', 'Duzib212G0472' => 'dzi', 'ECA233G2617' => 'eca', 'ECA236G4188' => 'eca', 'ECA240G0936' => 'eca', 'ECA240G1129' => 'eca', 'ECA247G0623' => 'eca', 'EL10Ac5g10451' => 'bvu', 'EL10Ac5g10453' => 'bvu', 'EL10Ac5g10894' => 'bvu', 'Eucgr.H00192' => 'egr', 'Eucgr.H00193' => 'egr', 'Eucgr.H00194' => 'egr', 'Eucgr.J01562' => 'egr', 'Eucgr.K03301' => 'egr', 'FAN02G0632' => 'fan', 'FAN05G5378' => 'fan', 'FAN09G3247' => 'fan', 'FAN12G0435' => 'fan', 'FAN12G2426' => 'fan', 'FAN14G1707' => 'fan', 'FAN14G4725' => 'fan', 'FAN15G2071' => 'fan', 'FAN17G3065' => 'fan', 'FAN19G1376' => 'fan', 'FAN20G0354' => 'fan', 'FAN20G2429' => 'fan', 'FAN20G2658' => 'fan', 'FAN24G2343' => 'fan', 'FAN27G2362' => 'fan', 'FAN28G1765' => 'fan', 'FvH4_1g16020' => 'fve', 'FvH4_2g04890' => 'fve', 'FvH4_2g22270' => 'fve', 'FvH4_4g02630' => 'fve', 'FvH4_4g02640' => 'fve', 'FvH4_6g02650' => 'fve', 'Glyma.02G140600' => 'gma', 'Glyma.03G159900' => 'gma', 'Glyma.05G234800' => 'gma', 'Glyma.07G269600' => 'gma', 'Glyma.08G042300' => 'gma', 'Glyma.10G033500' => 'gma', 'Glyma.10G185200' => 'gma', 'Glyma.17G004300' => 'gma', 'Glyma.19G161900' => 'gma', 'Glyma.20G205100' => 'gma', 'Glyma.20G205200' => 'gma', 'Gohir.A01G139101' => 'ghi', 'Gohir.A02G035600' => 'ghi', 'Gohir.A02G117901' => 'ghi', 'Gohir.A07G210100' => 'ghi', 'Gohir.A07G210200' => 'ghi', 'Gohir.A08G061100' => 'ghi', 'Gohir.A09G223000' => 'ghi', 'Gohir.A09G223100' => 'ghi', 'Gohir.A10G113900' => 'ghi', 'Gohir.A10G114000' => 'ghi', 'Gohir.D02G042300' => 'ghi', 'Gohir.D07G216100' => 'ghi', 'Gohir.D07G216200' => 'ghi', 'Gohir.D08G070400' => 'ghi', 'Gohir.D09G225000' => 'ghi', 'Gohir.D09G225100' => 'ghi', 'Gohir.D10G152300' => 'ghi', 'Gohir.D10G153200' => 'ghi', 'Gohir.D11G133701' => 'ghi', 'Gorai.004G074100' => 'gra', 'Gorai.005G046800' => 'gra', 'Gorai.006G246500' => 'gra', 'Gorai.006G246600' => 'gra', 'Gorai.007G142900' => 'gra', 'Gorai.011G171000' => 'gra', 'Gorai.011G171100' => 'gra', 'Gorai.013G104300' => 'gra', 'Gorai.013G104400' => 'gra', 'GSVIVG01000754001' => 'vvi', 'GSVIVG01000756001' => 'vvi', 'GSVIVG01010903001' => 'vvi', 'GSVIVG01017623001' => 'vvi', 'GSVIVG01018113001' => 'vvi', 'GSVIVG01018116001' => 'vvi', 'GSVIVG01018118001' => 'vvi', 'HanXRQChr03g0076211' => 'han', 'HanXRQChr03g0092431' => 'han', 'HanXRQChr03g0092441' => 'han', 'HanXRQChr03g0092591' => 'han', 'HanXRQChr03g0092671' => 'han', 'HanXRQChr03g0092681' => 'han', 'HanXRQChr03g0092691' => 'han', 'HanXRQChr03g0092701' => 'han', 'HanXRQChr03g0092721' => 'han', 'HanXRQChr03g0092731' => 'han', 'HanXRQChr04g0113681' => 'han', 'HanXRQChr10g0281371' => 'han', 'HanXRQChr11g0337141' => 'han', 'HanXRQChr13g0424521' => 'han', 'HanXRQChr13g0424531' => 'han', 'HanXRQChr13g0424541' => 'han', 'HanXRQChr16g0498221' => 'han', 'Haze_04377' => 'cav', 'Haze_11298' => 'cav', 'Haze_24547' => 'cav', 'Haze_24550' => 'cav', 'Haze_26587' => 'cav', 'Hma1.2p1_0650F.1_g195410' => 'hma', 'Hma1.2p1_0893F.1_g233470' => 'hma', 'HPP92_006508' => 'vpl', 'HPP92_024780' => 'vpl', 'Hund02688' => 'sun', 'Hund09380' => 'sun', 'Hund09381' => 'sun', 'Hund09832' => 'sun', 'Hund09833' => 'sun', 'Hund11351' => 'sun', 'Hund11513' => 'sun', 'Lalb_Chr06g0162591' => 'lal', 'Lalb_Chr06g0162601' => 'lal', 'Lalb_Chr06g0169321' => 'lal', 'Lalb_Chr09g0330951' => 'lal', 'Lalb_Chr16g0387631' => 'lal', 'Lalb_Chr21g0306241' => 'lal', 'Lalb_Chr25g0290051' => 'lal', 'Lalb_Chr25g0290061' => 'lal', 'Lalb_Chr25g0290071' => 'lal', 'Lj1g0003876' => 'lja', 'Lj1P1207T36' => 'lonja', 'Lj2C1156G12' => 'lonja', 'Lj3A793G39' => 'lonja', 'Lj3C580G2' => 'lonja', 'Lj3C780G2' => 'lonja', 'Lj3C780T4' => 'lonja', 'Lj3C793G9' => 'lonja', 'Lj4g0012960' => 'lja', 'Lj5g0021252' => 'lja', 'Lj5g0021484' => 'lja', 'Lj5g0024528' => 'lja', 'Lj6A399T12' => 'lonja', 'Lj6A656G65' => 'lonja', 'Lsat_1_v5_gn_3_125500' => 'lsa', 'Lsat_1_v5_gn_3_125540' => 'lsa', 'Lsat_1_v5_gn_5_72701' => 'lsa', 'Lsat_1_v5_gn_8_91560' => 'lsa', 'Lsat_1_v5_gn_9_9640' => 'lsa', 'Manes.01G200600' => 'mes', 'Manes.01G200700' => 'mes', 'Manes.03G168900' => 'mes', 'Manes.03G169000' => 'mes', 'Manes.05G085801' => 'mes', 'Manes.05G086200' => 'mes', 'Manes.15G036700' => 'mes', 'Manes.15G036900' => 'mes', 'Mapoly0004s0172' => 'mpo', 'Mapoly0023s0001' => 'mpo', 'Mapoly0142s0012' => 'mpo', 'MBI01_g32854_MAGBIO' => 'mbi', 'MBI11_g24427_MAGBIO' => 'mbi', 'MBI11_g47319_MAGBIO' => 'mbi', 'MCO01G433' => 'mco', 'MD00G1187800' => 'mdo', 'MD04G1226500' => 'mdo', 'MD05G1203900' => 'mdo', 'MD10G1191100' => 'mdo', 'MD12G1243500' => 'mdo', 'MD13G1207000' => 'mdo', 'MD13G1207100' => 'mdo', 'MD16G1208600' => 'mdo', 'Medtr1g050352' => 'mtr', 'Medtr1g070385' => 'mtr', 'Medtr1g070450' => 'mtr', 'Medtr1g075200' => 'mtr', 'Medtr1g075250' => 'mtr', 'Medtr1g075260' => 'mtr', 'Medtr1g475250' => 'mtr', 'Medtr4g075450' => 'mtr', 'Medtr7g096300' => 'mtr', 'Medtr8g105110' => 'mtr', 'MELO3C006470.2' => 'cme', 'MELO3C006471.2' => 'cme', 'MELO3C020772.2' => 'cme', 'MELO3C026780.2' => 'cme', 'MELO3C026781.2' => 'cme', 'Migut.D00390' => 'egut', 'Migut.G00435' => 'egut', 'Migut.G00436' => 'egut', 'Migut.G00718' => 'egut', 'MSTRG.21891' => 'ama', 'MSTRG.26910' => 'ama', 'MSTRG.4099' => 'ama', 'MSTRG.9925' => 'ama', 'Nitab4.5_0000165g0010' => 'nta', 'Nitab4.5_0000209g0180' => 'nta', 'Nitab4.5_0000244g0440' => 'nta', 'Nitab4.5_0000525g0220' => 'nta', 'Nitab4.5_0001597g0020' => 'nta', 'Nitab4.5_0001878g0040' => 'nta', 'Nitab4.5_0001878g0060' => 'nta', 'Nitab4.5_0002838g0100' => 'nta', 'Nitab4.5_0002838g0120' => 'nta', 'Nitab4.5_0004798g0030' => 'nta', 'Nitab4.5_0005420g0010' => 'nta', 'Nitab4.5_0005507g0010' => 'nta', 'Nitab4.5_0005574g0020' => 'nta', 'Nitab4.5_0005838g0010' => 'nta', 'Nitab4.5_0010580g0020' => 'nta', 'Nn1g02599' => 'nnu', 'Nn1g02608' => 'nnu', 'Nn3g17742' => 'nnu', 'Nn3g19534' => 'nnu', 'Nn3g19535' => 'nnu', 'Oeu008790.1' => 'oeu', 'Oeu008792.1' => 'oeu', 'Oeu032590.1' => 'oeu', 'Oeu035349.1' => 'oeu', 'Oeu049791.1' => 'oeu', 'Os01g0774500' => 'osa', 'Os03g0628800' => 'osa', 'Os03g0798600' => 'osa', 'Os05g0508800' => 'osa', 'Peaxi162Scf00036g02018' => 'pax', 'Peaxi162Scf00578g00032' => 'pax', 'Peaxi162Scf00578g00317' => 'pax', 'Peaxi162Scf00785g00114' => 'pax', 'Peaxi162Scf00813g00119' => 'pax', 'Peaxi162Scf00906g00227' => 'pax', 'PGR004G0875' => 'pgr', 'PGR004G2424' => 'pgr', 'PGR031G1239' => 'pgr', 'PGR031G2474' => 'pgr', 'PGR044G0423' => 'pgr', 'PGSC0003DMG400001128' => 'stu', 'PGSC0003DMG400007336' => 'stu', 'PGSC0003DMG400016318' => 'stu', 'PGSC0003DMG400016319' => 'stu', 'PGSC0003DMG400018074' => 'stu', 'Phvul.001G157700' => 'pvu', 'Phvul.002G148550' => 'pvu', 'Phvul.002G320200' => 'pvu', 'Phvul.003G089200' => 'pvu', 'Phvul.007G126000' => 'pvu', 'Phvul.007G126100' => 'pvu', 'Phvul.007G178000' => 'pvu', 'Phvul.007G178200' => 'pvu', 'Potri.002G043000' => 'ptr', 'Potri.002G043200' => 'ptr', 'Potri.003G123750' => 'ptr', 'Potri.005G055401' => 'ptr', 'Potri.005G219700' => 'ptr', 'Potri.005G220000' => 'ptr', 'Potri.008G161901' => 'ptr', 'Potri.008G162000' => 'ptr', 'Potri.008G162400' => 'ptr', 'Potri.010G076900' => 'ptr', 'Pp3c12_9180' => 'ppa', 'Pp3c13_19770' => 'ppa', 'Pp3c14_22950' => 'ppa', 'Pp3c16_12160' => 'ppa', 'Pp3c27_7820' => 'ppa', 'Pp3c2_3490' => 'ppa', 'Pp3c3_23700' => 'ppa', 'Pp3c3_36520' => 'ppa', 'Pp3c4_15250' => 'ppa', 'PRCOL_00007002' => 'pco', 'Prupe.1G030600' => 'ppe', 'Prupe.1G030700' => 'ppe', 'Prupe.6G345200' => 'ppe', 'Prupe.8G230300' => 'ppe', 'Prupe.8G230500' => 'ppe', 'Psat3g059600' => 'psa', 'Psat5g200920' => 'psa', 'Psat6g056440' => 'psa', 'Psat6g057360' => 'psa', 'Psat6g134120' => 'psa', 'Psat6g134160' => 'psa', 'Psat7g008640' => 'psa', 'Psat7g185240' => 'psa', 'PSO017G1330' => 'pso', 'PSO063G6097' => 'pso', 'PSO170G0835' => 'pso', 'PSO170G2499' => 'pso', 'PSO210G5058' => 'pso', 'PSO210G6154' => 'pso', 'PSO585G0031' => 'pso', 'PSO832G0264' => 'pso', 'PSO832G4288' => 'pso', 'QL03p027355' => 'qlo', 'QL03p027430' => 'qlo', 'QL04p081380' => 'qlo', 'QL06p015642' => 'qlo', 'QL06p015650' => 'qlo', 'QL06p015686' => 'qlo', 'QL12p042927' => 'qlo', 'QL93p1863_0035' => 'qlo', 'RcHm_v2.0_Chr3g0450581' => 'rch', 'RcHm_v2.0_Chr4g0390371' => 'rch', 'RcHm_v2.0_Chr4g0390381' => 'rch', 'RcHm_v2.0_Chr4g0390491' => 'rch', 'RcHm_v2.0_Chr4g0390501' => 'rch', 'RcHm_v2.0_Chr6g0289231' => 'rch', 'Rhsim04G0190400' => 'rsi', 'Rhsim04G0190500' => 'rsi', 'Rhsim04G0190600' => 'rsi', 'Rhsim13G0031400' => 'rsi', 'Rhsim13G0165600' => 'rsi', 'RhsimUnG0114600' => 'rsi', 'RhsimUnG0114700' => 'rsi', 'Sabra02G0034800' => 'sbr', 'Sabra02G0035100' => 'sbr', 'Sabra05G0168600' => 'sbr', 'Sabra05G0168800' => 'sbr', 'Sabra08G0123700' => 'sbr', 'Sabra10G0031900' => 'sbr', 'Sabra13G0039000' => 'sbr', 'SalBow2G0782' => 'sbo', 'SalBow2G1403' => 'sbo', 'SalBow4G0074' => 'sbo', 'SalBow4G2635' => 'sbo', 'SalBow5G3010' => 'sbo', 'Sc05g0000870' => 'sci', 'Sc05g0000890' => 'sci', 'Sc13g0005000' => 'sci', 'Sc13g0005030' => 'sci', 'Sc19g0003790' => 'sci', 'Sc19g0003800' => 'sci', 'Sed0003467' => 'sed', 'Sed0009355' => 'sed', 'Sed0009894' => 'sed', 'Sed0011972' => 'sed', 'Sed0021483' => 'sed', 'Sed0021750' => 'sed', 'Sed0026279' => 'sed', 'SEGI_05312' => 'sgi', 'SEGI_10112' => 'sgi', 'SEGI_15835' => 'sgi', 'SEGI_30386' => 'sgi', 'SEGI_34122' => 'sgi', 'SEGI_35063' => 'sgi', 'SGA_v2.0_scaffold101G29794' => 'sas', 'SGA_v2.0_scaffold1G00573' => 'sas', 'SGA_v2.0_scaffold79G25637' => 'sas', 'SGA_v2.0_scaffold88G27283' => 'sas', 'SGA_v2.0_scaffold88G27285' => 'sas', 'SGA_v2.0_scaffold88G27331' => 'sas', 'SHI09937' => 'shi', 'SMO119G0302' => 'smo', 'SMO137G0231' => 'smo', 'SMO367G1151' => 'smo', 'Solyc02g082000.3' => 'sly', 'Solyc06g031670.3' => 'sly', 'Solyc06g053810.3' => 'sly', 'Solyc07g025457.1' => 'sly', 'Solyc08g059740.1' => 'sly', 'Solyc08g059750.3' => 'sly', 'Solyc09g083370.3' => 'sly', 'Solyc12g038950.3' => 'sly', 'Sopen02g026630' => 'spe', 'Sopen06g018930' => 'spe', 'Sopen06g018940' => 'spe', 'Sopen08g009460' => 'spe', 'Sopen09g032290' => 'spe', 'Sp1g03080' => 'spa', 'Sp1g03090' => 'spa', 'Sp1g05480' => 'spa', 'Sp2g07860' => 'spa', 'Sp2g08430' => 'spa', 'Sp2g08440' => 'spa', 'Sp2g26200' => 'spa', 'Sp4g13170' => 'spa', 'Sp6g33840' => 'spa', 'SpUn1204_0010' => 'spa', 'TAR365G0908' => 'tar', 'TAR381G1270' => 'tar', 'TAR381G1651' => 'tar', 'TAR625G1131' => 'tar', 'TAR633G0962' => 'tar', 'TAR633G1729' => 'tar', 'TAR633G1864' => 'tar', 'TAR636G0221' => 'tar', 'TAR636G0314' => 'tar', 'TAR636G3202' => 'tar', 'THA.LOC104800805' => 'tha', 'THA.LOC104801096' => 'tha', 'THA.LOC104801555' => 'tha', 'THA.LOC104808491' => 'tha', 'THA.LOC104808595' => 'tha', 'THA.LOC104815985' => 'tha', 'THA.LOC104822250' => 'tha', 'THA.LOC104826071' => 'tha', 'Thecc.01G265200' => 'tca', 'Thecc.01G265300' => 'tca', 'Thecc.01G265700' => 'tca', 'Thecc.03G109100' => 'tca', 'Thecc.04G245900' => 'tca', 'Thecc.04G246000' => 'tca', 'Thhalv10003334m.g' => 'esa', 'Thhalv10005508m.g' => 'esa', 'Thhalv10005643m.g' => 'esa', 'Thhalv10007316m.g' => 'esa', 'Thhalv10009006m.g' => 'esa', 'Thhalv10009309m.g' => 'esa', 'Thhalv10014917m.g' => 'esa', 'Thhalv10014919m.g' => 'esa', 'Thhalv10015393m.g' => 'esa', 'Thhalv10016515m.g' => 'esa', 'Thhalv10029242m.g' => 'esa', 'TPR.G16654' => 'tpr', 'TPR.G20589' => 'tpr', 'TPR.G23029' => 'tpr', 'TPR.G27731' => 'tpr', 'TPR.G28889' => 'tpr', 'TPR.G28899' => 'tpr', 'TPR.G30846' => 'tpr', 'TPR.G5452' => 'tpr', 'TPR.G5713' => 'tpr', 'TPR.G9046' => 'tpr', 'TPR.G9061' => 'tpr', 'TWI09G1075' => 'twi', 'TWI12G0806' => 'twi', 'TWI18G0108' => 'twi', 'TWI53G1361' => 'twi', 'TWI73G0185' => 'twi', 'TWI73G0427' => 'twi', 'unitig_37.g12001' => 'ugi', 'unitig_747.g21660' => 'ugi', 'unitig_748.g7232' => 'ugi', 'unitig_748.g7315' => 'ugi', 'unitig_85.g27262' => 'ugi', 'unitig_92.g28220' => 'ugi', 'vmacro02632' => 'vma', 'vmacro08410' => 'vma', 'vmacro08411' => 'vma', 'vmacro15407' => 'vma', 'VMungo0251G3619' => 'vmu', 'VMungo0720G1204' => 'vmu', 'VMungo0720G1918' => 'vmu', 'VMungo0720G2387' => 'vmu', 'VMungo0720G2961' => 'vmu', 'VMungo1215G2154' => 'vmu', 'VMungo1383G2411' => 'vmu', 'Zm00001eb051130' => 'zma', 'Zm00001eb116830' => 'zma', 'Zm00001eb116850' => 'zma', 'Zm00001eb151740' => 'zma', 'Zm00001eb292360' => 'zma', 'Zm00001eb301640' => 'zma' ), 'gf_id' => 'HOM05D000856', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000856' ), 'data_identifier' => 'HOM05D000856', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000856', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p00010' => 'bna', 'A03p04160' => 'bna', 'A03p17160' => 'bna', 'A04p23370' => 'bna', 'A05p14860' => 'bna', 'A08p37020' => 'bna', 'A09p08050' => 'bna', 'A09p66800' => 'bna', 'A09p67940' => 'bna', 'A10p02680' => 'bna', 'A10p05320' => 'bna', 'Aa31LG1G20560' => 'aar', 'Aa31LG1G20610' => 'aar', 'Aa31LG1G7810' => 'aar', 'Aa31LG5G3590' => 'aar', 'Aa31LG5G6140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3819' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4683' => 'aag', 'Actinidia04480' => 'ach', 'Actinidia05466' => 'ach', 'Actinidia08445' => 'ach', 'Actinidia21170' => 'ach', 'Actinidia24812' => 'ach', 'Actinidia24951' => 'ach', 'Actinidia40088' => 'ach', 'Ah.02g111660' => 'amhyb', 'Ah.11g048900' => 'amhyb', 'Ah.11g049910' => 'amhyb', 'AL1G13870' => 'aly', 'AL1G13880' => 'aly', 'AL1G16760' => 'aly', 'AL390U10020' => 'aly', 'AL4G25520' => 'aly', 'AL6G19890' => 'aly', 'AL6G19900' => 'aly', 'AL6G19910' => 'aly', 'AL8G40100' => 'aly', 'Aqoxy2G03562' => 'aox', 'Aqoxy5G00316' => 'aox', 'Aqoxy5G00926' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1628KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1H403S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2FU6SJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.882I6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8YRY2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YN1SN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AF70II' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZA8L1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F916KL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHRD8H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KTZ8QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S22EMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8M29T' => 'arhy', 'AT1G04270' => 'ath', 'AT1G04280' => 'ath', 'AT1G06750' => 'ath', 'AT1G33850' => 'ath', 'AT2G30630' => 'ath', 'AT5G09490' => 'ath', 'AT5G09500' => 'ath', 'AT5G09510' => 'ath', 'AT5G43640' => 'ath', 'AT5G63070' => 'ath', 'ATR0605G315' => 'atr', 'Atru.chr11.175' => 'acertr', 'Atru.chr11.653' => 'acertr', 'Atru.chr3.1616' => 'acertr', 'Atru.chr4.2230' => 'acertr', 'Atru.chr4.2232' => 'acertr', 'Atru.chr5.1598' => 'acertr', 'Atru.chr5.1600' => 'acertr', 'Atru.chr5.2188' => 'acertr', 'AUR62008326' => 'cqu', 'AUR62011922' => 'cqu', 'AUR62011924' => 'cqu', 'AUR62021771' => 'cqu', 'AUR62032237' => 'cqu', 'AUR62032240' => 'cqu', 'BcaB01g05572' => 'bca', 'BcaB02g10337' => 'bca', 'BcaB04g19944' => 'bca', 'BcaB05g21548' => 'bca', 'BcaB05g21549' => 'bca', 'BcaB05g23227' => 'bca', 'BcaB06g26256' => 'bca', 'BcaB06g26257' => 'bca', 'BcaB06g28379' => 'bca', 'BcaC02g11159' => 'bca', 'BcaC03g13258' => 'bca', 'BcaC03g13259' => 'bca', 'BcaC05g24456' => 'bca', 'BcaC05g24457' => 'bca', 'BcaC07g36922' => 'bca', 'BcaC07g36923' => 'bca', 'BcaC07g42050' => 'bca', 'BcaC07g42176' => 'bca', 'BcaC07g42195' => 'bca', 'BcaC07g42196' => 'bca', 'BcaNung06674' => 'bca', 'BolC2t06351H' => 'bol', 'BolC2t06352H' => 'bol', 'BolC3t12993H' => 'bol', 'BolC4t23525H' => 'bol', 'BolC4t27475H' => 'bol', 'BolC5t29025H' => 'bol', 'BolC5t29026H' => 'bol', 'BolC8t46898H' => 'bol', 'BolC8t46899H' => 'bol', 'BolC8t52630H' => 'bol', 'BolC8t52765H' => 'bol', 'BolC9t53824H' => 'bol', 'BraA03t09760Z' => 'bra', 'BraA03t10990Z' => 'bra', 'BraA05t20413Z' => 'bra', 'BraA08t35602Z' => 'bra', 'BraA09t36458Z' => 'bra', 'BraA09t42018Z' => 'bra', 'BraA09t42129Z' => 'bra', 'BraA10t42536Z' => 'bra', 'BraA10t42537Z' => 'bra', 'C01p10690' => 'bna', 'C02p03890' => 'bna', 'C02p03900' => 'bna', 'C03p04620' => 'bna', 'C04p19870' => 'bna', 'C04p59670' => 'bna', 'C05p02460' => 'bna', 'C05p02470' => 'bna', 'C08p00980' => 'bna', 'C08p00990' => 'bna', 'C08p51030' => 'bna', 'C08p52360' => 'bna', 'C09p09120' => 'bna', 'CAN.G19.15' => 'can', 'CAN.G251.10' => 'can', 'CAN.G251.9' => 'can', 'CAN.G398.24' => 'can', 'CAN.G410.32' => 'can', 'CAN.G881.2' => 'can', 'CANSAT01G3025' => 'cansat', 'CANSAT78G1211' => 'cansat', 'CANSAT78G1218' => 'cansat', 'CANSAT78G1521' => 'cansat', 'CANSAT78G1670' => 'cansat', 'CARHR003600' => 'chi', 'CARHR003610' => 'chi', 'CARHR006290' => 'chi', 'CARHR006430' => 'chi', 'CARHR124110' => 'chi', 'CARHR203870' => 'chi', 'CARHR203880' => 'chi', 'CARHR203890' => 'chi', 'CARHR276880' => 'chi', 'Carub.0001s0346' => 'cru', 'Carub.0001s0347' => 'cru', 'Carub.0001s0607' => 'cru', 'Carub.0003s2768' => 'cru', 'Carub.0003s2769' => 'cru', 'Carub.0004s1178' => 'cru', 'Carub.0006s0806' => 'cru', 'Carub.0006s0807' => 'cru', 'Carub.0006s0808' => 'cru', 'Carub.0008s0501' => 'cru', 'Carub.0008s2379' => 'cru', 'Ca_08655_v3' => 'car', 'Ca_08922_v3' => 'car', 'Ca_08923_v3' => 'car', 'Ca_09119_v3' => 'car', 'Ca_09703_v3' => 'car', 'Ca_09705_v3' => 'car', 'Ca_09835_v3' => 'car', 'Ca_26403_v3' => 'car', 'Ca_30719_v3' => 'car', 'CBR_g17958' => 'cbr', 'CBR_g40516' => 'cbr', 'Cc00_g05350' => 'ccan', 'Cc01_g18690' => 'ccan', 'Cc03_g04830' => 'ccan', 'Cc03_g04850' => 'ccan', 'CDE02G4469' => 'cde', 'CDE06G0883' => 'cde', 'CDE06G1295' => 'cde', 'CDE06G1390' => 'cde', 'CDE07G0584' => 'cde', 'CDE07G1084' => 'cde', 'CDE08G1259' => 'cde', 'Cfa002341' => 'cfa', 'Cfa024337' => 'cfa', 'Ciclev10004749m.g' => 'ccl', 'Ciclev10006127m.g' => 'ccl', 'Ciclev10019720m.g' => 'ccl', 'Ciclev10022652m.g' => 'ccl', 'CiPaw.01G190400' => 'cil', 'CiPaw.01G190500' => 'cil', 'CiPaw.02G116400' => 'cil', 'CiPaw.02G116500' => 'cil', 'CiPaw.04G183000' => 'cil', 'CiPaw.04G183300' => 'cil', 'ClCG05G004610' => 'cla', 'ClCG05G004620' => 'cla', 'ClCG06G006730' => 'cla', 'ClCG06G006740' => 'cla', 'ClCG11G003690' => 'cla', 'COL.COLO4_08276' => 'col', 'COL.COLO4_08277' => 'col', 'COL.COLO4_15787' => 'col', 'COL.COLO4_15789' => 'col', 'Cpa.g.c44815' => 'cpa', 'Cpa.g.sc52.144' => 'cpa', 'Cpa.g.sc58.46' => 'cpa', 'Cpa.g.sc58.47' => 'cpa', 'Cre08.g360900' => 'cre', 'CsaV3_2G013030' => 'csa', 'CsaV3_2G013050' => 'csa', 'CsaV3_2G015620' => 'csa', 'CsaV3_3G012590' => 'csa', 'CsaV3_3G012600' => 'csa', 'CSS0001641' => 'camsi', 'CSS0008310' => 'camsi', 'CSS0013011' => 'camsi', 'CSS0017147' => 'camsi', 'CSS0022970' => 'camsi', 'CSS0025655' => 'camsi', 'CSS0028665' => 'camsi', 'CSS0029117' => 'camsi', 'CSS0032024' => 'camsi', 'CSS0039681' => 'camsi', 'CSS0046516' => 'camsi', 'CSS0050307' => 'camsi', 'DCAR_005871' => 'dca', 'DCAR_007342' => 'dca', 'DCAR_024228' => 'dca', 'DCAR_027277' => 'dca', 'DCAR_030718' => 'dca', 'Dinv20287' => 'din', 'Dinv22461' => 'din', 'Dinv22464' => 'din', 'Dinv29912' => 'din', 'Dinv29913' => 'din', 'Dinv34580' => 'din', 'Dinv34582' => 'din', 'Dinv44632' => 'din', 'Duzib052G0266' => 'dzi', 'Duzib133G0907' => 'dzi', 'Duzib133G1034' => 'dzi', 'Duzib138G0207' => 'dzi', 'Duzib138G0491' => 'dzi', 'Duzib151G0812' => 'dzi', 'Duzib151G1166' => 'dzi', 'Duzib168G0192' => 'dzi', 'Duzib211G0077' => 'dzi', 'Duzib212G0429' => 'dzi', 'Duzib212G0472' => 'dzi', 'ECA233G2617' => 'eca', 'ECA236G4188' => 'eca', 'ECA240G0936' => 'eca', 'ECA240G1129' => 'eca', 'ECA247G0623' => 'eca', 'EL10Ac5g10451' => 'bvu', 'EL10Ac5g10453' => 'bvu', 'EL10Ac5g10894' => 'bvu', 'Eucgr.H00192' => 'egr', 'Eucgr.H00193' => 'egr', 'Eucgr.H00194' => 'egr', 'Eucgr.J01562' => 'egr', 'Eucgr.K03301' => 'egr', 'FAN02G0632' => 'fan', 'FAN05G5378' => 'fan', 'FAN09G3247' => 'fan', 'FAN12G0435' => 'fan', 'FAN12G2426' => 'fan', 'FAN14G1707' => 'fan', 'FAN14G4725' => 'fan', 'FAN15G2071' => 'fan', 'FAN17G3065' => 'fan', 'FAN19G1376' => 'fan', 'FAN20G0354' => 'fan', 'FAN20G2429' => 'fan', 'FAN20G2658' => 'fan', 'FAN24G2343' => 'fan', 'FAN27G2362' => 'fan', 'FAN28G1765' => 'fan', 'FvH4_1g16020' => 'fve', 'FvH4_2g04890' => 'fve', 'FvH4_2g22270' => 'fve', 'FvH4_4g02630' => 'fve', 'FvH4_4g02640' => 'fve', 'FvH4_6g02650' => 'fve', 'Glyma.02G140600' => 'gma', 'Glyma.03G159900' => 'gma', 'Glyma.05G234800' => 'gma', 'Glyma.07G269600' => 'gma', 'Glyma.08G042300' => 'gma', 'Glyma.10G033500' => 'gma', 'Glyma.10G185200' => 'gma', 'Glyma.17G004300' => 'gma', 'Glyma.19G161900' => 'gma', 'Glyma.20G205100' => 'gma', 'Glyma.20G205200' => 'gma', 'Gohir.A01G139101' => 'ghi', 'Gohir.A02G035600' => 'ghi', 'Gohir.A02G117901' => 'ghi', 'Gohir.A07G210100' => 'ghi', 'Gohir.A07G210200' => 'ghi', 'Gohir.A08G061100' => 'ghi', 'Gohir.A09G223000' => 'ghi', 'Gohir.A09G223100' => 'ghi', 'Gohir.A10G113900' => 'ghi', 'Gohir.A10G114000' => 'ghi', 'Gohir.D02G042300' => 'ghi', 'Gohir.D07G216100' => 'ghi', 'Gohir.D07G216200' => 'ghi', 'Gohir.D08G070400' => 'ghi', 'Gohir.D09G225000' => 'ghi', 'Gohir.D09G225100' => 'ghi', 'Gohir.D10G152300' => 'ghi', 'Gohir.D10G153200' => 'ghi', 'Gohir.D11G133701' => 'ghi', 'Gorai.004G074100' => 'gra', 'Gorai.005G046800' => 'gra', 'Gorai.006G246500' => 'gra', 'Gorai.006G246600' => 'gra', 'Gorai.007G142900' => 'gra', 'Gorai.011G171000' => 'gra', 'Gorai.011G171100' => 'gra', 'Gorai.013G104300' => 'gra', 'Gorai.013G104400' => 'gra', 'GSVIVG01000754001' => 'vvi', 'GSVIVG01000756001' => 'vvi', 'GSVIVG01010903001' => 'vvi', 'GSVIVG01017623001' => 'vvi', 'GSVIVG01018113001' => 'vvi', 'GSVIVG01018116001' => 'vvi', 'GSVIVG01018118001' => 'vvi', 'HanXRQChr03g0076211' => 'han', 'HanXRQChr03g0092431' => 'han', 'HanXRQChr03g0092441' => 'han', 'HanXRQChr03g0092591' => 'han', 'HanXRQChr03g0092671' => 'han', 'HanXRQChr03g0092681' => 'han', 'HanXRQChr03g0092691' => 'han', 'HanXRQChr03g0092701' => 'han', 'HanXRQChr03g0092721' => 'han', 'HanXRQChr03g0092731' => 'han', 'HanXRQChr04g0113681' => 'han', 'HanXRQChr10g0281371' => 'han', 'HanXRQChr11g0337141' => 'han', 'HanXRQChr13g0424521' => 'han', 'HanXRQChr13g0424531' => 'han', 'HanXRQChr13g0424541' => 'han', 'HanXRQChr16g0498221' => 'han', 'Haze_04377' => 'cav', 'Haze_11298' => 'cav', 'Haze_24547' => 'cav', 'Haze_24550' => 'cav', 'Haze_26587' => 'cav', 'Hma1.2p1_0650F.1_g195410' => 'hma', 'Hma1.2p1_0893F.1_g233470' => 'hma', 'HPP92_006508' => 'vpl', 'HPP92_024780' => 'vpl', 'Hund02688' => 'sun', 'Hund09380' => 'sun', 'Hund09381' => 'sun', 'Hund09832' => 'sun', 'Hund09833' => 'sun', 'Hund11351' => 'sun', 'Hund11513' => 'sun', 'Lalb_Chr06g0162591' => 'lal', 'Lalb_Chr06g0162601' => 'lal', 'Lalb_Chr06g0169321' => 'lal', 'Lalb_Chr09g0330951' => 'lal', 'Lalb_Chr16g0387631' => 'lal', 'Lalb_Chr21g0306241' => 'lal', 'Lalb_Chr25g0290051' => 'lal', 'Lalb_Chr25g0290061' => 'lal', 'Lalb_Chr25g0290071' => 'lal', 'Lj1g0003876' => 'lja', 'Lj1P1207T36' => 'lonja', 'Lj2C1156G12' => 'lonja', 'Lj3A793G39' => 'lonja', 'Lj3C580G2' => 'lonja', 'Lj3C780G2' => 'lonja', 'Lj3C780T4' => 'lonja', 'Lj3C793G9' => 'lonja', 'Lj4g0012960' => 'lja', 'Lj5g0021252' => 'lja', 'Lj5g0021484' => 'lja', 'Lj5g0024528' => 'lja', 'Lj6A399T12' => 'lonja', 'Lj6A656G65' => 'lonja', 'Lsat_1_v5_gn_3_125500' => 'lsa', 'Lsat_1_v5_gn_3_125540' => 'lsa', 'Lsat_1_v5_gn_5_72701' => 'lsa', 'Lsat_1_v5_gn_8_91560' => 'lsa', 'Lsat_1_v5_gn_9_9640' => 'lsa', 'Manes.01G200600' => 'mes', 'Manes.01G200700' => 'mes', 'Manes.03G168900' => 'mes', 'Manes.03G169000' => 'mes', 'Manes.05G085801' => 'mes', 'Manes.05G086200' => 'mes', 'Manes.15G036700' => 'mes', 'Manes.15G036900' => 'mes', 'Mapoly0004s0172' => 'mpo', 'Mapoly0023s0001' => 'mpo', 'Mapoly0142s0012' => 'mpo', 'MBI01_g32854_MAGBIO' => 'mbi', 'MBI11_g24427_MAGBIO' => 'mbi', 'MBI11_g47319_MAGBIO' => 'mbi', 'MCO01G433' => 'mco', 'MD00G1187800' => 'mdo', 'MD04G1226500' => 'mdo', 'MD05G1203900' => 'mdo', 'MD10G1191100' => 'mdo', 'MD12G1243500' => 'mdo', 'MD13G1207000' => 'mdo', 'MD13G1207100' => 'mdo', 'MD16G1208600' => 'mdo', 'Medtr1g050352' => 'mtr', 'Medtr1g070385' => 'mtr', 'Medtr1g070450' => 'mtr', 'Medtr1g075200' => 'mtr', 'Medtr1g075250' => 'mtr', 'Medtr1g075260' => 'mtr', 'Medtr1g475250' => 'mtr', 'Medtr4g075450' => 'mtr', 'Medtr7g096300' => 'mtr', 'Medtr8g105110' => 'mtr', 'MELO3C006470.2' => 'cme', 'MELO3C006471.2' => 'cme', 'MELO3C020772.2' => 'cme', 'MELO3C026780.2' => 'cme', 'MELO3C026781.2' => 'cme', 'Migut.D00390' => 'egut', 'Migut.G00435' => 'egut', 'Migut.G00436' => 'egut', 'Migut.G00718' => 'egut', 'MSTRG.21891' => 'ama', 'MSTRG.26910' => 'ama', 'MSTRG.4099' => 'ama', 'MSTRG.9925' => 'ama', 'Nitab4.5_0000165g0010' => 'nta', 'Nitab4.5_0000209g0180' => 'nta', 'Nitab4.5_0000244g0440' => 'nta', 'Nitab4.5_0000525g0220' => 'nta', 'Nitab4.5_0001597g0020' => 'nta', 'Nitab4.5_0001878g0040' => 'nta', 'Nitab4.5_0001878g0060' => 'nta', 'Nitab4.5_0002838g0100' => 'nta', 'Nitab4.5_0002838g0120' => 'nta', 'Nitab4.5_0004798g0030' => 'nta', 'Nitab4.5_0005420g0010' => 'nta', 'Nitab4.5_0005507g0010' => 'nta', 'Nitab4.5_0005574g0020' => 'nta', 'Nitab4.5_0005838g0010' => 'nta', 'Nitab4.5_0010580g0020' => 'nta', 'Nn1g02599' => 'nnu', 'Nn1g02608' => 'nnu', 'Nn3g17742' => 'nnu', 'Nn3g19534' => 'nnu', 'Nn3g19535' => 'nnu', 'Oeu008790.1' => 'oeu', 'Oeu008792.1' => 'oeu', 'Oeu032590.1' => 'oeu', 'Oeu035349.1' => 'oeu', 'Oeu049791.1' => 'oeu', 'Os01g0774500' => 'osa', 'Os03g0628800' => 'osa', 'Os03g0798600' => 'osa', 'Os05g0508800' => 'osa', 'Peaxi162Scf00036g02018' => 'pax', 'Peaxi162Scf00578g00032' => 'pax', 'Peaxi162Scf00578g00317' => 'pax', 'Peaxi162Scf00785g00114' => 'pax', 'Peaxi162Scf00813g00119' => 'pax', 'Peaxi162Scf00906g00227' => 'pax', 'PGR004G0875' => 'pgr', 'PGR004G2424' => 'pgr', 'PGR031G1239' => 'pgr', 'PGR031G2474' => 'pgr', 'PGR044G0423' => 'pgr', 'PGSC0003DMG400001128' => 'stu', 'PGSC0003DMG400007336' => 'stu', 'PGSC0003DMG400016318' => 'stu', 'PGSC0003DMG400016319' => 'stu', 'PGSC0003DMG400018074' => 'stu', 'Phvul.001G157700' => 'pvu', 'Phvul.002G148550' => 'pvu', 'Phvul.002G320200' => 'pvu', 'Phvul.003G089200' => 'pvu', 'Phvul.007G126000' => 'pvu', 'Phvul.007G126100' => 'pvu', 'Phvul.007G178000' => 'pvu', 'Phvul.007G178200' => 'pvu', 'Potri.002G043000' => 'ptr', 'Potri.002G043200' => 'ptr', 'Potri.003G123750' => 'ptr', 'Potri.005G055401' => 'ptr', 'Potri.005G219700' => 'ptr', 'Potri.005G220000' => 'ptr', 'Potri.008G161901' => 'ptr', 'Potri.008G162000' => 'ptr', 'Potri.008G162400' => 'ptr', 'Potri.010G076900' => 'ptr', 'Pp3c12_9180' => 'ppa', 'Pp3c13_19770' => 'ppa', 'Pp3c14_22950' => 'ppa', 'Pp3c16_12160' => 'ppa', 'Pp3c27_7820' => 'ppa', 'Pp3c2_3490' => 'ppa', 'Pp3c3_23700' => 'ppa', 'Pp3c3_36520' => 'ppa', 'Pp3c4_15250' => 'ppa', 'PRCOL_00007002' => 'pco', 'Prupe.1G030600' => 'ppe', 'Prupe.1G030700' => 'ppe', 'Prupe.6G345200' => 'ppe', 'Prupe.8G230300' => 'ppe', 'Prupe.8G230500' => 'ppe', 'Psat3g059600' => 'psa', 'Psat5g200920' => 'psa', 'Psat6g056440' => 'psa', 'Psat6g057360' => 'psa', 'Psat6g134120' => 'psa', 'Psat6g134160' => 'psa', 'Psat7g008640' => 'psa', 'Psat7g185240' => 'psa', 'PSO017G1330' => 'pso', 'PSO063G6097' => 'pso', 'PSO170G0835' => 'pso', 'PSO170G2499' => 'pso', 'PSO210G5058' => 'pso', 'PSO210G6154' => 'pso', 'PSO585G0031' => 'pso', 'PSO832G0264' => 'pso', 'PSO832G4288' => 'pso', 'QL03p027355' => 'qlo', 'QL03p027430' => 'qlo', 'QL04p081380' => 'qlo', 'QL06p015642' => 'qlo', 'QL06p015650' => 'qlo', 'QL06p015686' => 'qlo', 'QL12p042927' => 'qlo', 'QL93p1863_0035' => 'qlo', 'RcHm_v2.0_Chr3g0450581' => 'rch', 'RcHm_v2.0_Chr4g0390371' => 'rch', 'RcHm_v2.0_Chr4g0390381' => 'rch', 'RcHm_v2.0_Chr4g0390491' => 'rch', 'RcHm_v2.0_Chr4g0390501' => 'rch', 'RcHm_v2.0_Chr6g0289231' => 'rch', 'Rhsim04G0190400' => 'rsi', 'Rhsim04G0190500' => 'rsi', 'Rhsim04G0190600' => 'rsi', 'Rhsim13G0031400' => 'rsi', 'Rhsim13G0165600' => 'rsi', 'RhsimUnG0114600' => 'rsi', 'RhsimUnG0114700' => 'rsi', 'Sabra02G0034800' => 'sbr', 'Sabra02G0035100' => 'sbr', 'Sabra05G0168600' => 'sbr', 'Sabra05G0168800' => 'sbr', 'Sabra08G0123700' => 'sbr', 'Sabra10G0031900' => 'sbr', 'Sabra13G0039000' => 'sbr', 'SalBow2G0782' => 'sbo', 'SalBow2G1403' => 'sbo', 'SalBow4G0074' => 'sbo', 'SalBow4G2635' => 'sbo', 'SalBow5G3010' => 'sbo', 'Sc05g0000870' => 'sci', 'Sc05g0000890' => 'sci', 'Sc13g0005000' => 'sci', 'Sc13g0005030' => 'sci', 'Sc19g0003790' => 'sci', 'Sc19g0003800' => 'sci', 'Sed0003467' => 'sed', 'Sed0009355' => 'sed', 'Sed0009894' => 'sed', 'Sed0011972' => 'sed', 'Sed0021483' => 'sed', 'Sed0021750' => 'sed', 'Sed0026279' => 'sed', 'SEGI_05312' => 'sgi', 'SEGI_10112' => 'sgi', 'SEGI_15835' => 'sgi', 'SEGI_30386' => 'sgi', 'SEGI_34122' => 'sgi', 'SEGI_35063' => 'sgi', 'SGA_v2.0_scaffold101G29794' => 'sas', 'SGA_v2.0_scaffold1G00573' => 'sas', 'SGA_v2.0_scaffold79G25637' => 'sas', 'SGA_v2.0_scaffold88G27283' => 'sas', 'SGA_v2.0_scaffold88G27285' => 'sas', 'SGA_v2.0_scaffold88G27331' => 'sas', 'SHI09937' => 'shi', 'SMO119G0302' => 'smo', 'SMO137G0231' => 'smo', 'SMO367G1151' => 'smo', 'Solyc02g082000.3' => 'sly', 'Solyc06g031670.3' => 'sly', 'Solyc06g053810.3' => 'sly', 'Solyc07g025457.1' => 'sly', 'Solyc08g059740.1' => 'sly', 'Solyc08g059750.3' => 'sly', 'Solyc09g083370.3' => 'sly', 'Solyc12g038950.3' => 'sly', 'Sopen02g026630' => 'spe', 'Sopen06g018930' => 'spe', 'Sopen06g018940' => 'spe', 'Sopen08g009460' => 'spe', 'Sopen09g032290' => 'spe', 'Sp1g03080' => 'spa', 'Sp1g03090' => 'spa', 'Sp1g05480' => 'spa', 'Sp2g07860' => 'spa', 'Sp2g08430' => 'spa', 'Sp2g08440' => 'spa', 'Sp2g26200' => 'spa', 'Sp4g13170' => 'spa', 'Sp6g33840' => 'spa', 'SpUn1204_0010' => 'spa', 'TAR365G0908' => 'tar', 'TAR381G1270' => 'tar', 'TAR381G1651' => 'tar', 'TAR625G1131' => 'tar', 'TAR633G0962' => 'tar', 'TAR633G1729' => 'tar', 'TAR633G1864' => 'tar', 'TAR636G0221' => 'tar', 'TAR636G0314' => 'tar', 'TAR636G3202' => 'tar', 'THA.LOC104800805' => 'tha', 'THA.LOC104801096' => 'tha', 'THA.LOC104801555' => 'tha', 'THA.LOC104808491' => 'tha', 'THA.LOC104808595' => 'tha', 'THA.LOC104815985' => 'tha', 'THA.LOC104822250' => 'tha', 'THA.LOC104826071' => 'tha', 'Thecc.01G265200' => 'tca', 'Thecc.01G265300' => 'tca', 'Thecc.01G265700' => 'tca', 'Thecc.03G109100' => 'tca', 'Thecc.04G245900' => 'tca', 'Thecc.04G246000' => 'tca', 'Thhalv10003334m.g' => 'esa', 'Thhalv10005508m.g' => 'esa', 'Thhalv10005643m.g' => 'esa', 'Thhalv10007316m.g' => 'esa', 'Thhalv10009006m.g' => 'esa', 'Thhalv10009309m.g' => 'esa', 'Thhalv10014917m.g' => 'esa', 'Thhalv10014919m.g' => 'esa', 'Thhalv10015393m.g' => 'esa', 'Thhalv10016515m.g' => 'esa', 'Thhalv10029242m.g' => 'esa', 'TPR.G16654' => 'tpr', 'TPR.G20589' => 'tpr', 'TPR.G23029' => 'tpr', 'TPR.G27731' => 'tpr', 'TPR.G28889' => 'tpr', 'TPR.G28899' => 'tpr', 'TPR.G30846' => 'tpr', 'TPR.G5452' => 'tpr', 'TPR.G5713' => 'tpr', 'TPR.G9046' => 'tpr', 'TPR.G9061' => 'tpr', 'TWI09G1075' => 'twi', 'TWI12G0806' => 'twi', 'TWI18G0108' => 'twi', 'TWI53G1361' => 'twi', 'TWI73G0185' => 'twi', 'TWI73G0427' => 'twi', 'unitig_37.g12001' => 'ugi', 'unitig_747.g21660' => 'ugi', 'unitig_748.g7232' => 'ugi', 'unitig_748.g7315' => 'ugi', 'unitig_85.g27262' => 'ugi', 'unitig_92.g28220' => 'ugi', 'vmacro02632' => 'vma', 'vmacro08410' => 'vma', 'vmacro08411' => 'vma', 'vmacro15407' => 'vma', 'VMungo0251G3619' => 'vmu', 'VMungo0720G1204' => 'vmu', 'VMungo0720G1918' => 'vmu', 'VMungo0720G2387' => 'vmu', 'VMungo0720G2961' => 'vmu', 'VMungo1215G2154' => 'vmu', 'VMungo1383G2411' => 'vmu', 'Zm00001eb051130' => 'zma', 'Zm00001eb116830' => 'zma', 'Zm00001eb116850' => 'zma', 'Zm00001eb151740' => 'zma', 'Zm00001eb292360' => 'zma', 'Zm00001eb301640' => 'zma' ) $gf_id = 'HOM05D000856' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000856' ) $data_identifier = 'HOM05D000856' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 13, 'ath' => (int) 10, 'atr' => (int) 1, 'acertr' => (int) 8, 'cqu' => (int) 6, 'bca' => (int) 21, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 11, 'car' => (int) 9, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 8, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 5, 'fan' => (int) 16, 'fve' => (int) 6, 'gma' => (int) 11, 'ghi' => (int) 19, 'gra' => (int) 9, 'vvi' => (int) 7, 'han' => (int) 17, 'cav' => (int) 5, 'hma' => (int) 2, 'vpl' => (int) 2, 'sun' => (int) 7, 'lal' => (int) 9, 'lja' => (int) 5, 'lonja' => (int) 9, 'lsa' => (int) 5, 'mes' => (int) 8, 'mpo' => (int) 3, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 10, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 15, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 9, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 9, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 6, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 5, 'spa' => (int) 10, 'tar' => (int) 10, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 11, 'tpr' => (int) 11, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 4, 'vmu' => (int) 7, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb301640' $species_info = array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ) $local_species = 'tha' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000856', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p00010' => 'bna', 'A03p04160' => 'bna', 'A03p17160' => 'bna', 'A04p23370' => 'bna', 'A05p14860' => 'bna', 'A08p37020' => 'bna', 'A09p08050' => 'bna', 'A09p66800' => 'bna', 'A09p67940' => 'bna', 'A10p02680' => 'bna', 'A10p05320' => 'bna', 'Aa31LG1G20560' => 'aar', 'Aa31LG1G20610' => 'aar', 'Aa31LG1G7810' => 'aar', 'Aa31LG5G3590' => 'aar', 'Aa31LG5G6140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3819' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4683' => 'aag', 'Actinidia04480' => 'ach', 'Actinidia05466' => 'ach', 'Actinidia08445' => 'ach', 'Actinidia21170' => 'ach', 'Actinidia24812' => 'ach', 'Actinidia24951' => 'ach', 'Actinidia40088' => 'ach', 'Ah.02g111660' => 'amhyb', 'Ah.11g048900' => 'amhyb', 'Ah.11g049910' => 'amhyb', 'AL1G13870' => 'aly', 'AL1G13880' => 'aly', 'AL1G16760' => 'aly', 'AL390U10020' => 'aly', 'AL4G25520' => 'aly', 'AL6G19890' => 'aly', 'AL6G19900' => 'aly', 'AL6G19910' => 'aly', 'AL8G40100' => 'aly', 'Aqoxy2G03562' => 'aox', 'Aqoxy5G00316' => 'aox', 'Aqoxy5G00926' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1628KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1H403S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2FU6SJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.882I6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8YRY2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YN1SN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AF70II' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZA8L1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F916KL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHRD8H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KTZ8QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S22EMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8M29T' => 'arhy', 'AT1G04270' => 'ath', 'AT1G04280' => 'ath', 'AT1G06750' => 'ath', 'AT1G33850' => 'ath', 'AT2G30630' => 'ath', 'AT5G09490' => 'ath', 'AT5G09500' => 'ath', 'AT5G09510' => 'ath', 'AT5G43640' => 'ath', 'AT5G63070' => 'ath', 'ATR0605G315' => 'atr', 'Atru.chr11.175' => 'acertr', 'Atru.chr11.653' => 'acertr', 'Atru.chr3.1616' => 'acertr', 'Atru.chr4.2230' => 'acertr', 'Atru.chr4.2232' => 'acertr', 'Atru.chr5.1598' => 'acertr', 'Atru.chr5.1600' => 'acertr', 'Atru.chr5.2188' => 'acertr', 'AUR62008326' => 'cqu', 'AUR62011922' => 'cqu', 'AUR62011924' => 'cqu', 'AUR62021771' => 'cqu', 'AUR62032237' => 'cqu', 'AUR62032240' => 'cqu', 'BcaB01g05572' => 'bca', 'BcaB02g10337' => 'bca', 'BcaB04g19944' => 'bca', 'BcaB05g21548' => 'bca', 'BcaB05g21549' => 'bca', 'BcaB05g23227' => 'bca', 'BcaB06g26256' => 'bca', 'BcaB06g26257' => 'bca', 'BcaB06g28379' => 'bca', 'BcaC02g11159' => 'bca', 'BcaC03g13258' => 'bca', 'BcaC03g13259' => 'bca', 'BcaC05g24456' => 'bca', 'BcaC05g24457' => 'bca', 'BcaC07g36922' => 'bca', 'BcaC07g36923' => 'bca', 'BcaC07g42050' => 'bca', 'BcaC07g42176' => 'bca', 'BcaC07g42195' => 'bca', 'BcaC07g42196' => 'bca', 'BcaNung06674' => 'bca', 'BolC2t06351H' => 'bol', 'BolC2t06352H' => 'bol', 'BolC3t12993H' => 'bol', 'BolC4t23525H' => 'bol', 'BolC4t27475H' => 'bol', 'BolC5t29025H' => 'bol', 'BolC5t29026H' => 'bol', 'BolC8t46898H' => 'bol', 'BolC8t46899H' => 'bol', 'BolC8t52630H' => 'bol', 'BolC8t52765H' => 'bol', 'BolC9t53824H' => 'bol', 'BraA03t09760Z' => 'bra', 'BraA03t10990Z' => 'bra', 'BraA05t20413Z' => 'bra', 'BraA08t35602Z' => 'bra', 'BraA09t36458Z' => 'bra', 'BraA09t42018Z' => 'bra', 'BraA09t42129Z' => 'bra', 'BraA10t42536Z' => 'bra', 'BraA10t42537Z' => 'bra', 'C01p10690' => 'bna', 'C02p03890' => 'bna', 'C02p03900' => 'bna', 'C03p04620' => 'bna', 'C04p19870' => 'bna', 'C04p59670' => 'bna', 'C05p02460' => 'bna', 'C05p02470' => 'bna', 'C08p00980' => 'bna', 'C08p00990' => 'bna', 'C08p51030' => 'bna', 'C08p52360' => 'bna', 'C09p09120' => 'bna', 'CAN.G19.15' => 'can', 'CAN.G251.10' => 'can', 'CAN.G251.9' => 'can', 'CAN.G398.24' => 'can', 'CAN.G410.32' => 'can', 'CAN.G881.2' => 'can', 'CANSAT01G3025' => 'cansat', 'CANSAT78G1211' => 'cansat', 'CANSAT78G1218' => 'cansat', 'CANSAT78G1521' => 'cansat', 'CANSAT78G1670' => 'cansat', 'CARHR003600' => 'chi', 'CARHR003610' => 'chi', 'CARHR006290' => 'chi', 'CARHR006430' => 'chi', 'CARHR124110' => 'chi', 'CARHR203870' => 'chi', 'CARHR203880' => 'chi', 'CARHR203890' => 'chi', 'CARHR276880' => 'chi', 'Carub.0001s0346' => 'cru', 'Carub.0001s0347' => 'cru', 'Carub.0001s0607' => 'cru', 'Carub.0003s2768' => 'cru', 'Carub.0003s2769' => 'cru', 'Carub.0004s1178' => 'cru', 'Carub.0006s0806' => 'cru', 'Carub.0006s0807' => 'cru', 'Carub.0006s0808' => 'cru', 'Carub.0008s0501' => 'cru', 'Carub.0008s2379' => 'cru', 'Ca_08655_v3' => 'car', 'Ca_08922_v3' => 'car', 'Ca_08923_v3' => 'car', 'Ca_09119_v3' => 'car', 'Ca_09703_v3' => 'car', 'Ca_09705_v3' => 'car', 'Ca_09835_v3' => 'car', 'Ca_26403_v3' => 'car', 'Ca_30719_v3' => 'car', 'CBR_g17958' => 'cbr', 'CBR_g40516' => 'cbr', 'Cc00_g05350' => 'ccan', 'Cc01_g18690' => 'ccan', 'Cc03_g04830' => 'ccan', 'Cc03_g04850' => 'ccan', 'CDE02G4469' => 'cde', 'CDE06G0883' => 'cde', 'CDE06G1295' => 'cde', 'CDE06G1390' => 'cde', 'CDE07G0584' => 'cde', 'CDE07G1084' => 'cde', 'CDE08G1259' => 'cde', 'Cfa002341' => 'cfa', 'Cfa024337' => 'cfa', 'Ciclev10004749m.g' => 'ccl', 'Ciclev10006127m.g' => 'ccl', 'Ciclev10019720m.g' => 'ccl', 'Ciclev10022652m.g' => 'ccl', 'CiPaw.01G190400' => 'cil', 'CiPaw.01G190500' => 'cil', 'CiPaw.02G116400' => 'cil', 'CiPaw.02G116500' => 'cil', 'CiPaw.04G183000' => 'cil', 'CiPaw.04G183300' => 'cil', 'ClCG05G004610' => 'cla', 'ClCG05G004620' => 'cla', 'ClCG06G006730' => 'cla', 'ClCG06G006740' => 'cla', 'ClCG11G003690' => 'cla', 'COL.COLO4_08276' => 'col', 'COL.COLO4_08277' => 'col', 'COL.COLO4_15787' => 'col', 'COL.COLO4_15789' => 'col', 'Cpa.g.c44815' => 'cpa', 'Cpa.g.sc52.144' => 'cpa', 'Cpa.g.sc58.46' => 'cpa', 'Cpa.g.sc58.47' => 'cpa', 'Cre08.g360900' => 'cre', 'CsaV3_2G013030' => 'csa', 'CsaV3_2G013050' => 'csa', 'CsaV3_2G015620' => 'csa', 'CsaV3_3G012590' => 'csa', 'CsaV3_3G012600' => 'csa', 'CSS0001641' => 'camsi', 'CSS0008310' => 'camsi', 'CSS0013011' => 'camsi', 'CSS0017147' => 'camsi', 'CSS0022970' => 'camsi', 'CSS0025655' => 'camsi', 'CSS0028665' => 'camsi', 'CSS0029117' => 'camsi', 'CSS0032024' => 'camsi', 'CSS0039681' => 'camsi', 'CSS0046516' => 'camsi', 'CSS0050307' => 'camsi', 'DCAR_005871' => 'dca', 'DCAR_007342' => 'dca', 'DCAR_024228' => 'dca', 'DCAR_027277' => 'dca', 'DCAR_030718' => 'dca', 'Dinv20287' => 'din', 'Dinv22461' => 'din', 'Dinv22464' => 'din', 'Dinv29912' => 'din', 'Dinv29913' => 'din', 'Dinv34580' => 'din', 'Dinv34582' => 'din', 'Dinv44632' => 'din', 'Duzib052G0266' => 'dzi', 'Duzib133G0907' => 'dzi', 'Duzib133G1034' => 'dzi', 'Duzib138G0207' => 'dzi', 'Duzib138G0491' => 'dzi', 'Duzib151G0812' => 'dzi', 'Duzib151G1166' => 'dzi', 'Duzib168G0192' => 'dzi', 'Duzib211G0077' => 'dzi', 'Duzib212G0429' => 'dzi', 'Duzib212G0472' => 'dzi', 'ECA233G2617' => 'eca', 'ECA236G4188' => 'eca', 'ECA240G0936' => 'eca', 'ECA240G1129' => 'eca', 'ECA247G0623' => 'eca', 'EL10Ac5g10451' => 'bvu', 'EL10Ac5g10453' => 'bvu', 'EL10Ac5g10894' => 'bvu', 'Eucgr.H00192' => 'egr', 'Eucgr.H00193' => 'egr', 'Eucgr.H00194' => 'egr', 'Eucgr.J01562' => 'egr', 'Eucgr.K03301' => 'egr', 'FAN02G0632' => 'fan', 'FAN05G5378' => 'fan', 'FAN09G3247' => 'fan', 'FAN12G0435' => 'fan', 'FAN12G2426' => 'fan', 'FAN14G1707' => 'fan', 'FAN14G4725' => 'fan', 'FAN15G2071' => 'fan', 'FAN17G3065' => 'fan', 'FAN19G1376' => 'fan', 'FAN20G0354' => 'fan', 'FAN20G2429' => 'fan', 'FAN20G2658' => 'fan', 'FAN24G2343' => 'fan', 'FAN27G2362' => 'fan', 'FAN28G1765' => 'fan', 'FvH4_1g16020' => 'fve', 'FvH4_2g04890' => 'fve', 'FvH4_2g22270' => 'fve', 'FvH4_4g02630' => 'fve', 'FvH4_4g02640' => 'fve', 'FvH4_6g02650' => 'fve', 'Glyma.02G140600' => 'gma', 'Glyma.03G159900' => 'gma', 'Glyma.05G234800' => 'gma', 'Glyma.07G269600' => 'gma', 'Glyma.08G042300' => 'gma', 'Glyma.10G033500' => 'gma', 'Glyma.10G185200' => 'gma', 'Glyma.17G004300' => 'gma', 'Glyma.19G161900' => 'gma', 'Glyma.20G205100' => 'gma', 'Glyma.20G205200' => 'gma', 'Gohir.A01G139101' => 'ghi', 'Gohir.A02G035600' => 'ghi', 'Gohir.A02G117901' => 'ghi', 'Gohir.A07G210100' => 'ghi', 'Gohir.A07G210200' => 'ghi', 'Gohir.A08G061100' => 'ghi', 'Gohir.A09G223000' => 'ghi', 'Gohir.A09G223100' => 'ghi', 'Gohir.A10G113900' => 'ghi', 'Gohir.A10G114000' => 'ghi', 'Gohir.D02G042300' => 'ghi', 'Gohir.D07G216100' => 'ghi', 'Gohir.D07G216200' => 'ghi', 'Gohir.D08G070400' => 'ghi', 'Gohir.D09G225000' => 'ghi', 'Gohir.D09G225100' => 'ghi', 'Gohir.D10G152300' => 'ghi', 'Gohir.D10G153200' => 'ghi', 'Gohir.D11G133701' => 'ghi', 'Gorai.004G074100' => 'gra', 'Gorai.005G046800' => 'gra', 'Gorai.006G246500' => 'gra', 'Gorai.006G246600' => 'gra', 'Gorai.007G142900' => 'gra', 'Gorai.011G171000' => 'gra', 'Gorai.011G171100' => 'gra', 'Gorai.013G104300' => 'gra', 'Gorai.013G104400' => 'gra', 'GSVIVG01000754001' => 'vvi', 'GSVIVG01000756001' => 'vvi', 'GSVIVG01010903001' => 'vvi', 'GSVIVG01017623001' => 'vvi', 'GSVIVG01018113001' => 'vvi', 'GSVIVG01018116001' => 'vvi', 'GSVIVG01018118001' => 'vvi', 'HanXRQChr03g0076211' => 'han', 'HanXRQChr03g0092431' => 'han', 'HanXRQChr03g0092441' => 'han', 'HanXRQChr03g0092591' => 'han', 'HanXRQChr03g0092671' => 'han', 'HanXRQChr03g0092681' => 'han', 'HanXRQChr03g0092691' => 'han', 'HanXRQChr03g0092701' => 'han', 'HanXRQChr03g0092721' => 'han', 'HanXRQChr03g0092731' => 'han', 'HanXRQChr04g0113681' => 'han', 'HanXRQChr10g0281371' => 'han', 'HanXRQChr11g0337141' => 'han', 'HanXRQChr13g0424521' => 'han', 'HanXRQChr13g0424531' => 'han', 'HanXRQChr13g0424541' => 'han', 'HanXRQChr16g0498221' => 'han', 'Haze_04377' => 'cav', 'Haze_11298' => 'cav', 'Haze_24547' => 'cav', 'Haze_24550' => 'cav', 'Haze_26587' => 'cav', 'Hma1.2p1_0650F.1_g195410' => 'hma', 'Hma1.2p1_0893F.1_g233470' => 'hma', 'HPP92_006508' => 'vpl', 'HPP92_024780' => 'vpl', 'Hund02688' => 'sun', 'Hund09380' => 'sun', 'Hund09381' => 'sun', 'Hund09832' => 'sun', 'Hund09833' => 'sun', 'Hund11351' => 'sun', 'Hund11513' => 'sun', 'Lalb_Chr06g0162591' => 'lal', 'Lalb_Chr06g0162601' => 'lal', 'Lalb_Chr06g0169321' => 'lal', 'Lalb_Chr09g0330951' => 'lal', 'Lalb_Chr16g0387631' => 'lal', 'Lalb_Chr21g0306241' => 'lal', 'Lalb_Chr25g0290051' => 'lal', 'Lalb_Chr25g0290061' => 'lal', 'Lalb_Chr25g0290071' => 'lal', 'Lj1g0003876' => 'lja', 'Lj1P1207T36' => 'lonja', 'Lj2C1156G12' => 'lonja', 'Lj3A793G39' => 'lonja', 'Lj3C580G2' => 'lonja', 'Lj3C780G2' => 'lonja', 'Lj3C780T4' => 'lonja', 'Lj3C793G9' => 'lonja', 'Lj4g0012960' => 'lja', 'Lj5g0021252' => 'lja', 'Lj5g0021484' => 'lja', 'Lj5g0024528' => 'lja', 'Lj6A399T12' => 'lonja', 'Lj6A656G65' => 'lonja', 'Lsat_1_v5_gn_3_125500' => 'lsa', 'Lsat_1_v5_gn_3_125540' => 'lsa', 'Lsat_1_v5_gn_5_72701' => 'lsa', 'Lsat_1_v5_gn_8_91560' => 'lsa', 'Lsat_1_v5_gn_9_9640' => 'lsa', 'Manes.01G200600' => 'mes', 'Manes.01G200700' => 'mes', 'Manes.03G168900' => 'mes', 'Manes.03G169000' => 'mes', 'Manes.05G085801' => 'mes', 'Manes.05G086200' => 'mes', 'Manes.15G036700' => 'mes', 'Manes.15G036900' => 'mes', 'Mapoly0004s0172' => 'mpo', 'Mapoly0023s0001' => 'mpo', 'Mapoly0142s0012' => 'mpo', 'MBI01_g32854_MAGBIO' => 'mbi', 'MBI11_g24427_MAGBIO' => 'mbi', 'MBI11_g47319_MAGBIO' => 'mbi', 'MCO01G433' => 'mco', 'MD00G1187800' => 'mdo', 'MD04G1226500' => 'mdo', 'MD05G1203900' => 'mdo', 'MD10G1191100' => 'mdo', 'MD12G1243500' => 'mdo', 'MD13G1207000' => 'mdo', 'MD13G1207100' => 'mdo', 'MD16G1208600' => 'mdo', 'Medtr1g050352' => 'mtr', 'Medtr1g070385' => 'mtr', 'Medtr1g070450' => 'mtr', 'Medtr1g075200' => 'mtr', 'Medtr1g075250' => 'mtr', 'Medtr1g075260' => 'mtr', 'Medtr1g475250' => 'mtr', 'Medtr4g075450' => 'mtr', 'Medtr7g096300' => 'mtr', 'Medtr8g105110' => 'mtr', 'MELO3C006470.2' => 'cme', 'MELO3C006471.2' => 'cme', 'MELO3C020772.2' => 'cme', 'MELO3C026780.2' => 'cme', 'MELO3C026781.2' => 'cme', 'Migut.D00390' => 'egut', 'Migut.G00435' => 'egut', 'Migut.G00436' => 'egut', 'Migut.G00718' => 'egut', 'MSTRG.21891' => 'ama', 'MSTRG.26910' => 'ama', 'MSTRG.4099' => 'ama', 'MSTRG.9925' => 'ama', 'Nitab4.5_0000165g0010' => 'nta', 'Nitab4.5_0000209g0180' => 'nta', 'Nitab4.5_0000244g0440' => 'nta', 'Nitab4.5_0000525g0220' => 'nta', 'Nitab4.5_0001597g0020' => 'nta', 'Nitab4.5_0001878g0040' => 'nta', 'Nitab4.5_0001878g0060' => 'nta', 'Nitab4.5_0002838g0100' => 'nta', 'Nitab4.5_0002838g0120' => 'nta', 'Nitab4.5_0004798g0030' => 'nta', 'Nitab4.5_0005420g0010' => 'nta', 'Nitab4.5_0005507g0010' => 'nta', 'Nitab4.5_0005574g0020' => 'nta', 'Nitab4.5_0005838g0010' => 'nta', 'Nitab4.5_0010580g0020' => 'nta', 'Nn1g02599' => 'nnu', 'Nn1g02608' => 'nnu', 'Nn3g17742' => 'nnu', 'Nn3g19534' => 'nnu', 'Nn3g19535' => 'nnu', 'Oeu008790.1' => 'oeu', 'Oeu008792.1' => 'oeu', 'Oeu032590.1' => 'oeu', 'Oeu035349.1' => 'oeu', 'Oeu049791.1' => 'oeu', 'Os01g0774500' => 'osa', 'Os03g0628800' => 'osa', 'Os03g0798600' => 'osa', 'Os05g0508800' => 'osa', 'Peaxi162Scf00036g02018' => 'pax', 'Peaxi162Scf00578g00032' => 'pax', 'Peaxi162Scf00578g00317' => 'pax', 'Peaxi162Scf00785g00114' => 'pax', 'Peaxi162Scf00813g00119' => 'pax', 'Peaxi162Scf00906g00227' => 'pax', 'PGR004G0875' => 'pgr', 'PGR004G2424' => 'pgr', 'PGR031G1239' => 'pgr', 'PGR031G2474' => 'pgr', 'PGR044G0423' => 'pgr', 'PGSC0003DMG400001128' => 'stu', 'PGSC0003DMG400007336' => 'stu', 'PGSC0003DMG400016318' => 'stu', 'PGSC0003DMG400016319' => 'stu', 'PGSC0003DMG400018074' => 'stu', 'Phvul.001G157700' => 'pvu', 'Phvul.002G148550' => 'pvu', 'Phvul.002G320200' => 'pvu', 'Phvul.003G089200' => 'pvu', 'Phvul.007G126000' => 'pvu', 'Phvul.007G126100' => 'pvu', 'Phvul.007G178000' => 'pvu', 'Phvul.007G178200' => 'pvu', 'Potri.002G043000' => 'ptr', 'Potri.002G043200' => 'ptr', 'Potri.003G123750' => 'ptr', 'Potri.005G055401' => 'ptr', 'Potri.005G219700' => 'ptr', 'Potri.005G220000' => 'ptr', 'Potri.008G161901' => 'ptr', 'Potri.008G162000' => 'ptr', 'Potri.008G162400' => 'ptr', 'Potri.010G076900' => 'ptr', 'Pp3c12_9180' => 'ppa', 'Pp3c13_19770' => 'ppa', 'Pp3c14_22950' => 'ppa', 'Pp3c16_12160' => 'ppa', 'Pp3c27_7820' => 'ppa', 'Pp3c2_3490' => 'ppa', 'Pp3c3_23700' => 'ppa', 'Pp3c3_36520' => 'ppa', 'Pp3c4_15250' => 'ppa', 'PRCOL_00007002' => 'pco', 'Prupe.1G030600' => 'ppe', 'Prupe.1G030700' => 'ppe', 'Prupe.6G345200' => 'ppe', 'Prupe.8G230300' => 'ppe', 'Prupe.8G230500' => 'ppe', 'Psat3g059600' => 'psa', 'Psat5g200920' => 'psa', 'Psat6g056440' => 'psa', 'Psat6g057360' => 'psa', 'Psat6g134120' => 'psa', 'Psat6g134160' => 'psa', 'Psat7g008640' => 'psa', 'Psat7g185240' => 'psa', 'PSO017G1330' => 'pso', 'PSO063G6097' => 'pso', 'PSO170G0835' => 'pso', 'PSO170G2499' => 'pso', 'PSO210G5058' => 'pso', 'PSO210G6154' => 'pso', 'PSO585G0031' => 'pso', 'PSO832G0264' => 'pso', 'PSO832G4288' => 'pso', 'QL03p027355' => 'qlo', 'QL03p027430' => 'qlo', 'QL04p081380' => 'qlo', 'QL06p015642' => 'qlo', 'QL06p015650' => 'qlo', 'QL06p015686' => 'qlo', 'QL12p042927' => 'qlo', 'QL93p1863_0035' => 'qlo', 'RcHm_v2.0_Chr3g0450581' => 'rch', 'RcHm_v2.0_Chr4g0390371' => 'rch', 'RcHm_v2.0_Chr4g0390381' => 'rch', 'RcHm_v2.0_Chr4g0390491' => 'rch', 'RcHm_v2.0_Chr4g0390501' => 'rch', 'RcHm_v2.0_Chr6g0289231' => 'rch', 'Rhsim04G0190400' => 'rsi', 'Rhsim04G0190500' => 'rsi', 'Rhsim04G0190600' => 'rsi', 'Rhsim13G0031400' => 'rsi', 'Rhsim13G0165600' => 'rsi', 'RhsimUnG0114600' => 'rsi', 'RhsimUnG0114700' => 'rsi', 'Sabra02G0034800' => 'sbr', 'Sabra02G0035100' => 'sbr', 'Sabra05G0168600' => 'sbr', 'Sabra05G0168800' => 'sbr', 'Sabra08G0123700' => 'sbr', 'Sabra10G0031900' => 'sbr', 'Sabra13G0039000' => 'sbr', 'SalBow2G0782' => 'sbo', 'SalBow2G1403' => 'sbo', 'SalBow4G0074' => 'sbo', 'SalBow4G2635' => 'sbo', 'SalBow5G3010' => 'sbo', 'Sc05g0000870' => 'sci', 'Sc05g0000890' => 'sci', 'Sc13g0005000' => 'sci', 'Sc13g0005030' => 'sci', 'Sc19g0003790' => 'sci', 'Sc19g0003800' => 'sci', 'Sed0003467' => 'sed', 'Sed0009355' => 'sed', 'Sed0009894' => 'sed', 'Sed0011972' => 'sed', 'Sed0021483' => 'sed', 'Sed0021750' => 'sed', 'Sed0026279' => 'sed', 'SEGI_05312' => 'sgi', 'SEGI_10112' => 'sgi', 'SEGI_15835' => 'sgi', 'SEGI_30386' => 'sgi', 'SEGI_34122' => 'sgi', 'SEGI_35063' => 'sgi', 'SGA_v2.0_scaffold101G29794' => 'sas', 'SGA_v2.0_scaffold1G00573' => 'sas', 'SGA_v2.0_scaffold79G25637' => 'sas', 'SGA_v2.0_scaffold88G27283' => 'sas', 'SGA_v2.0_scaffold88G27285' => 'sas', 'SGA_v2.0_scaffold88G27331' => 'sas', 'SHI09937' => 'shi', 'SMO119G0302' => 'smo', 'SMO137G0231' => 'smo', 'SMO367G1151' => 'smo', 'Solyc02g082000.3' => 'sly', 'Solyc06g031670.3' => 'sly', 'Solyc06g053810.3' => 'sly', 'Solyc07g025457.1' => 'sly', 'Solyc08g059740.1' => 'sly', 'Solyc08g059750.3' => 'sly', 'Solyc09g083370.3' => 'sly', 'Solyc12g038950.3' => 'sly', 'Sopen02g026630' => 'spe', 'Sopen06g018930' => 'spe', 'Sopen06g018940' => 'spe', 'Sopen08g009460' => 'spe', 'Sopen09g032290' => 'spe', 'Sp1g03080' => 'spa', 'Sp1g03090' => 'spa', 'Sp1g05480' => 'spa', 'Sp2g07860' => 'spa', 'Sp2g08430' => 'spa', 'Sp2g08440' => 'spa', 'Sp2g26200' => 'spa', 'Sp4g13170' => 'spa', 'Sp6g33840' => 'spa', 'SpUn1204_0010' => 'spa', 'TAR365G0908' => 'tar', 'TAR381G1270' => 'tar', 'TAR381G1651' => 'tar', 'TAR625G1131' => 'tar', 'TAR633G0962' => 'tar', 'TAR633G1729' => 'tar', 'TAR633G1864' => 'tar', 'TAR636G0221' => 'tar', 'TAR636G0314' => 'tar', 'TAR636G3202' => 'tar', 'THA.LOC104800805' => 'tha', 'THA.LOC104801096' => 'tha', 'THA.LOC104801555' => 'tha', 'THA.LOC104808491' => 'tha', 'THA.LOC104808595' => 'tha', 'THA.LOC104815985' => 'tha', 'THA.LOC104822250' => 'tha', 'THA.LOC104826071' => 'tha', 'Thecc.01G265200' => 'tca', 'Thecc.01G265300' => 'tca', 'Thecc.01G265700' => 'tca', 'Thecc.03G109100' => 'tca', 'Thecc.04G245900' => 'tca', 'Thecc.04G246000' => 'tca', 'Thhalv10003334m.g' => 'esa', 'Thhalv10005508m.g' => 'esa', 'Thhalv10005643m.g' => 'esa', 'Thhalv10007316m.g' => 'esa', 'Thhalv10009006m.g' => 'esa', 'Thhalv10009309m.g' => 'esa', 'Thhalv10014917m.g' => 'esa', 'Thhalv10014919m.g' => 'esa', 'Thhalv10015393m.g' => 'esa', 'Thhalv10016515m.g' => 'esa', 'Thhalv10029242m.g' => 'esa', 'TPR.G16654' => 'tpr', 'TPR.G20589' => 'tpr', 'TPR.G23029' => 'tpr', 'TPR.G27731' => 'tpr', 'TPR.G28889' => 'tpr', 'TPR.G28899' => 'tpr', 'TPR.G30846' => 'tpr', 'TPR.G5452' => 'tpr', 'TPR.G5713' => 'tpr', 'TPR.G9046' => 'tpr', 'TPR.G9061' => 'tpr', 'TWI09G1075' => 'twi', 'TWI12G0806' => 'twi', 'TWI18G0108' => 'twi', 'TWI53G1361' => 'twi', 'TWI73G0185' => 'twi', 'TWI73G0427' => 'twi', 'unitig_37.g12001' => 'ugi', 'unitig_747.g21660' => 'ugi', 'unitig_748.g7232' => 'ugi', 'unitig_748.g7315' => 'ugi', 'unitig_85.g27262' => 'ugi', 'unitig_92.g28220' => 'ugi', 'vmacro02632' => 'vma', 'vmacro08410' => 'vma', 'vmacro08411' => 'vma', 'vmacro15407' => 'vma', 'VMungo0251G3619' => 'vmu', 'VMungo0720G1204' => 'vmu', 'VMungo0720G1918' => 'vmu', 'VMungo0720G2387' => 'vmu', 'VMungo0720G2961' => 'vmu', 'VMungo1215G2154' => 'vmu', 'VMungo1383G2411' => 'vmu', 'Zm00001eb051130' => 'zma', 'Zm00001eb116830' => 'zma', 'Zm00001eb116850' => 'zma', 'Zm00001eb151740' => 'zma', 'Zm00001eb292360' => 'zma', 'Zm00001eb301640' => 'zma' ), 'gf_id' => 'HOM05D000856', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000856' ), 'data_identifier' => 'HOM05D000856', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000856', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p00010' => 'bna', 'A03p04160' => 'bna', 'A03p17160' => 'bna', 'A04p23370' => 'bna', 'A05p14860' => 'bna', 'A08p37020' => 'bna', 'A09p08050' => 'bna', 'A09p66800' => 'bna', 'A09p67940' => 'bna', 'A10p02680' => 'bna', 'A10p05320' => 'bna', 'Aa31LG1G20560' => 'aar', 'Aa31LG1G20610' => 'aar', 'Aa31LG1G7810' => 'aar', 'Aa31LG5G3590' => 'aar', 'Aa31LG5G6140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3819' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4683' => 'aag', 'Actinidia04480' => 'ach', 'Actinidia05466' => 'ach', 'Actinidia08445' => 'ach', 'Actinidia21170' => 'ach', 'Actinidia24812' => 'ach', 'Actinidia24951' => 'ach', 'Actinidia40088' => 'ach', 'Ah.02g111660' => 'amhyb', 'Ah.11g048900' => 'amhyb', 'Ah.11g049910' => 'amhyb', 'AL1G13870' => 'aly', 'AL1G13880' => 'aly', 'AL1G16760' => 'aly', 'AL390U10020' => 'aly', 'AL4G25520' => 'aly', 'AL6G19890' => 'aly', 'AL6G19900' => 'aly', 'AL6G19910' => 'aly', 'AL8G40100' => 'aly', 'Aqoxy2G03562' => 'aox', 'Aqoxy5G00316' => 'aox', 'Aqoxy5G00926' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1628KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1H403S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2FU6SJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.882I6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8YRY2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YN1SN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AF70II' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZA8L1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F916KL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHRD8H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KTZ8QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S22EMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8M29T' => 'arhy', 'AT1G04270' => 'ath', 'AT1G04280' => 'ath', 'AT1G06750' => 'ath', 'AT1G33850' => 'ath', 'AT2G30630' => 'ath', 'AT5G09490' => 'ath', 'AT5G09500' => 'ath', 'AT5G09510' => 'ath', 'AT5G43640' => 'ath', 'AT5G63070' => 'ath', 'ATR0605G315' => 'atr', 'Atru.chr11.175' => 'acertr', 'Atru.chr11.653' => 'acertr', 'Atru.chr3.1616' => 'acertr', 'Atru.chr4.2230' => 'acertr', 'Atru.chr4.2232' => 'acertr', 'Atru.chr5.1598' => 'acertr', 'Atru.chr5.1600' => 'acertr', 'Atru.chr5.2188' => 'acertr', 'AUR62008326' => 'cqu', 'AUR62011922' => 'cqu', 'AUR62011924' => 'cqu', 'AUR62021771' => 'cqu', 'AUR62032237' => 'cqu', 'AUR62032240' => 'cqu', 'BcaB01g05572' => 'bca', 'BcaB02g10337' => 'bca', 'BcaB04g19944' => 'bca', 'BcaB05g21548' => 'bca', 'BcaB05g21549' => 'bca', 'BcaB05g23227' => 'bca', 'BcaB06g26256' => 'bca', 'BcaB06g26257' => 'bca', 'BcaB06g28379' => 'bca', 'BcaC02g11159' => 'bca', 'BcaC03g13258' => 'bca', 'BcaC03g13259' => 'bca', 'BcaC05g24456' => 'bca', 'BcaC05g24457' => 'bca', 'BcaC07g36922' => 'bca', 'BcaC07g36923' => 'bca', 'BcaC07g42050' => 'bca', 'BcaC07g42176' => 'bca', 'BcaC07g42195' => 'bca', 'BcaC07g42196' => 'bca', 'BcaNung06674' => 'bca', 'BolC2t06351H' => 'bol', 'BolC2t06352H' => 'bol', 'BolC3t12993H' => 'bol', 'BolC4t23525H' => 'bol', 'BolC4t27475H' => 'bol', 'BolC5t29025H' => 'bol', 'BolC5t29026H' => 'bol', 'BolC8t46898H' => 'bol', 'BolC8t46899H' => 'bol', 'BolC8t52630H' => 'bol', 'BolC8t52765H' => 'bol', 'BolC9t53824H' => 'bol', 'BraA03t09760Z' => 'bra', 'BraA03t10990Z' => 'bra', 'BraA05t20413Z' => 'bra', 'BraA08t35602Z' => 'bra', 'BraA09t36458Z' => 'bra', 'BraA09t42018Z' => 'bra', 'BraA09t42129Z' => 'bra', 'BraA10t42536Z' => 'bra', 'BraA10t42537Z' => 'bra', 'C01p10690' => 'bna', 'C02p03890' => 'bna', 'C02p03900' => 'bna', 'C03p04620' => 'bna', 'C04p19870' => 'bna', 'C04p59670' => 'bna', 'C05p02460' => 'bna', 'C05p02470' => 'bna', 'C08p00980' => 'bna', 'C08p00990' => 'bna', 'C08p51030' => 'bna', 'C08p52360' => 'bna', 'C09p09120' => 'bna', 'CAN.G19.15' => 'can', 'CAN.G251.10' => 'can', 'CAN.G251.9' => 'can', 'CAN.G398.24' => 'can', 'CAN.G410.32' => 'can', 'CAN.G881.2' => 'can', 'CANSAT01G3025' => 'cansat', 'CANSAT78G1211' => 'cansat', 'CANSAT78G1218' => 'cansat', 'CANSAT78G1521' => 'cansat', 'CANSAT78G1670' => 'cansat', 'CARHR003600' => 'chi', 'CARHR003610' => 'chi', 'CARHR006290' => 'chi', 'CARHR006430' => 'chi', 'CARHR124110' => 'chi', 'CARHR203870' => 'chi', 'CARHR203880' => 'chi', 'CARHR203890' => 'chi', 'CARHR276880' => 'chi', 'Carub.0001s0346' => 'cru', 'Carub.0001s0347' => 'cru', 'Carub.0001s0607' => 'cru', 'Carub.0003s2768' => 'cru', 'Carub.0003s2769' => 'cru', 'Carub.0004s1178' => 'cru', 'Carub.0006s0806' => 'cru', 'Carub.0006s0807' => 'cru', 'Carub.0006s0808' => 'cru', 'Carub.0008s0501' => 'cru', 'Carub.0008s2379' => 'cru', 'Ca_08655_v3' => 'car', 'Ca_08922_v3' => 'car', 'Ca_08923_v3' => 'car', 'Ca_09119_v3' => 'car', 'Ca_09703_v3' => 'car', 'Ca_09705_v3' => 'car', 'Ca_09835_v3' => 'car', 'Ca_26403_v3' => 'car', 'Ca_30719_v3' => 'car', 'CBR_g17958' => 'cbr', 'CBR_g40516' => 'cbr', 'Cc00_g05350' => 'ccan', 'Cc01_g18690' => 'ccan', 'Cc03_g04830' => 'ccan', 'Cc03_g04850' => 'ccan', 'CDE02G4469' => 'cde', 'CDE06G0883' => 'cde', 'CDE06G1295' => 'cde', 'CDE06G1390' => 'cde', 'CDE07G0584' => 'cde', 'CDE07G1084' => 'cde', 'CDE08G1259' => 'cde', 'Cfa002341' => 'cfa', 'Cfa024337' => 'cfa', 'Ciclev10004749m.g' => 'ccl', 'Ciclev10006127m.g' => 'ccl', 'Ciclev10019720m.g' => 'ccl', 'Ciclev10022652m.g' => 'ccl', 'CiPaw.01G190400' => 'cil', 'CiPaw.01G190500' => 'cil', 'CiPaw.02G116400' => 'cil', 'CiPaw.02G116500' => 'cil', 'CiPaw.04G183000' => 'cil', 'CiPaw.04G183300' => 'cil', 'ClCG05G004610' => 'cla', 'ClCG05G004620' => 'cla', 'ClCG06G006730' => 'cla', 'ClCG06G006740' => 'cla', 'ClCG11G003690' => 'cla', 'COL.COLO4_08276' => 'col', 'COL.COLO4_08277' => 'col', 'COL.COLO4_15787' => 'col', 'COL.COLO4_15789' => 'col', 'Cpa.g.c44815' => 'cpa', 'Cpa.g.sc52.144' => 'cpa', 'Cpa.g.sc58.46' => 'cpa', 'Cpa.g.sc58.47' => 'cpa', 'Cre08.g360900' => 'cre', 'CsaV3_2G013030' => 'csa', 'CsaV3_2G013050' => 'csa', 'CsaV3_2G015620' => 'csa', 'CsaV3_3G012590' => 'csa', 'CsaV3_3G012600' => 'csa', 'CSS0001641' => 'camsi', 'CSS0008310' => 'camsi', 'CSS0013011' => 'camsi', 'CSS0017147' => 'camsi', 'CSS0022970' => 'camsi', 'CSS0025655' => 'camsi', 'CSS0028665' => 'camsi', 'CSS0029117' => 'camsi', 'CSS0032024' => 'camsi', 'CSS0039681' => 'camsi', 'CSS0046516' => 'camsi', 'CSS0050307' => 'camsi', 'DCAR_005871' => 'dca', 'DCAR_007342' => 'dca', 'DCAR_024228' => 'dca', 'DCAR_027277' => 'dca', 'DCAR_030718' => 'dca', 'Dinv20287' => 'din', 'Dinv22461' => 'din', 'Dinv22464' => 'din', 'Dinv29912' => 'din', 'Dinv29913' => 'din', 'Dinv34580' => 'din', 'Dinv34582' => 'din', 'Dinv44632' => 'din', 'Duzib052G0266' => 'dzi', 'Duzib133G0907' => 'dzi', 'Duzib133G1034' => 'dzi', 'Duzib138G0207' => 'dzi', 'Duzib138G0491' => 'dzi', 'Duzib151G0812' => 'dzi', 'Duzib151G1166' => 'dzi', 'Duzib168G0192' => 'dzi', 'Duzib211G0077' => 'dzi', 'Duzib212G0429' => 'dzi', 'Duzib212G0472' => 'dzi', 'ECA233G2617' => 'eca', 'ECA236G4188' => 'eca', 'ECA240G0936' => 'eca', 'ECA240G1129' => 'eca', 'ECA247G0623' => 'eca', 'EL10Ac5g10451' => 'bvu', 'EL10Ac5g10453' => 'bvu', 'EL10Ac5g10894' => 'bvu', 'Eucgr.H00192' => 'egr', 'Eucgr.H00193' => 'egr', 'Eucgr.H00194' => 'egr', 'Eucgr.J01562' => 'egr', 'Eucgr.K03301' => 'egr', 'FAN02G0632' => 'fan', 'FAN05G5378' => 'fan', 'FAN09G3247' => 'fan', 'FAN12G0435' => 'fan', 'FAN12G2426' => 'fan', 'FAN14G1707' => 'fan', 'FAN14G4725' => 'fan', 'FAN15G2071' => 'fan', 'FAN17G3065' => 'fan', 'FAN19G1376' => 'fan', 'FAN20G0354' => 'fan', 'FAN20G2429' => 'fan', 'FAN20G2658' => 'fan', 'FAN24G2343' => 'fan', 'FAN27G2362' => 'fan', 'FAN28G1765' => 'fan', 'FvH4_1g16020' => 'fve', 'FvH4_2g04890' => 'fve', 'FvH4_2g22270' => 'fve', 'FvH4_4g02630' => 'fve', 'FvH4_4g02640' => 'fve', 'FvH4_6g02650' => 'fve', 'Glyma.02G140600' => 'gma', 'Glyma.03G159900' => 'gma', 'Glyma.05G234800' => 'gma', 'Glyma.07G269600' => 'gma', 'Glyma.08G042300' => 'gma', 'Glyma.10G033500' => 'gma', 'Glyma.10G185200' => 'gma', 'Glyma.17G004300' => 'gma', 'Glyma.19G161900' => 'gma', 'Glyma.20G205100' => 'gma', 'Glyma.20G205200' => 'gma', 'Gohir.A01G139101' => 'ghi', 'Gohir.A02G035600' => 'ghi', 'Gohir.A02G117901' => 'ghi', 'Gohir.A07G210100' => 'ghi', 'Gohir.A07G210200' => 'ghi', 'Gohir.A08G061100' => 'ghi', 'Gohir.A09G223000' => 'ghi', 'Gohir.A09G223100' => 'ghi', 'Gohir.A10G113900' => 'ghi', 'Gohir.A10G114000' => 'ghi', 'Gohir.D02G042300' => 'ghi', 'Gohir.D07G216100' => 'ghi', 'Gohir.D07G216200' => 'ghi', 'Gohir.D08G070400' => 'ghi', 'Gohir.D09G225000' => 'ghi', 'Gohir.D09G225100' => 'ghi', 'Gohir.D10G152300' => 'ghi', 'Gohir.D10G153200' => 'ghi', 'Gohir.D11G133701' => 'ghi', 'Gorai.004G074100' => 'gra', 'Gorai.005G046800' => 'gra', 'Gorai.006G246500' => 'gra', 'Gorai.006G246600' => 'gra', 'Gorai.007G142900' => 'gra', 'Gorai.011G171000' => 'gra', 'Gorai.011G171100' => 'gra', 'Gorai.013G104300' => 'gra', 'Gorai.013G104400' => 'gra', 'GSVIVG01000754001' => 'vvi', 'GSVIVG01000756001' => 'vvi', 'GSVIVG01010903001' => 'vvi', 'GSVIVG01017623001' => 'vvi', 'GSVIVG01018113001' => 'vvi', 'GSVIVG01018116001' => 'vvi', 'GSVIVG01018118001' => 'vvi', 'HanXRQChr03g0076211' => 'han', 'HanXRQChr03g0092431' => 'han', 'HanXRQChr03g0092441' => 'han', 'HanXRQChr03g0092591' => 'han', 'HanXRQChr03g0092671' => 'han', 'HanXRQChr03g0092681' => 'han', 'HanXRQChr03g0092691' => 'han', 'HanXRQChr03g0092701' => 'han', 'HanXRQChr03g0092721' => 'han', 'HanXRQChr03g0092731' => 'han', 'HanXRQChr04g0113681' => 'han', 'HanXRQChr10g0281371' => 'han', 'HanXRQChr11g0337141' => 'han', 'HanXRQChr13g0424521' => 'han', 'HanXRQChr13g0424531' => 'han', 'HanXRQChr13g0424541' => 'han', 'HanXRQChr16g0498221' => 'han', 'Haze_04377' => 'cav', 'Haze_11298' => 'cav', 'Haze_24547' => 'cav', 'Haze_24550' => 'cav', 'Haze_26587' => 'cav', 'Hma1.2p1_0650F.1_g195410' => 'hma', 'Hma1.2p1_0893F.1_g233470' => 'hma', 'HPP92_006508' => 'vpl', 'HPP92_024780' => 'vpl', 'Hund02688' => 'sun', 'Hund09380' => 'sun', 'Hund09381' => 'sun', 'Hund09832' => 'sun', 'Hund09833' => 'sun', 'Hund11351' => 'sun', 'Hund11513' => 'sun', 'Lalb_Chr06g0162591' => 'lal', 'Lalb_Chr06g0162601' => 'lal', 'Lalb_Chr06g0169321' => 'lal', 'Lalb_Chr09g0330951' => 'lal', 'Lalb_Chr16g0387631' => 'lal', 'Lalb_Chr21g0306241' => 'lal', 'Lalb_Chr25g0290051' => 'lal', 'Lalb_Chr25g0290061' => 'lal', 'Lalb_Chr25g0290071' => 'lal', 'Lj1g0003876' => 'lja', 'Lj1P1207T36' => 'lonja', 'Lj2C1156G12' => 'lonja', 'Lj3A793G39' => 'lonja', 'Lj3C580G2' => 'lonja', 'Lj3C780G2' => 'lonja', 'Lj3C780T4' => 'lonja', 'Lj3C793G9' => 'lonja', 'Lj4g0012960' => 'lja', 'Lj5g0021252' => 'lja', 'Lj5g0021484' => 'lja', 'Lj5g0024528' => 'lja', 'Lj6A399T12' => 'lonja', 'Lj6A656G65' => 'lonja', 'Lsat_1_v5_gn_3_125500' => 'lsa', 'Lsat_1_v5_gn_3_125540' => 'lsa', 'Lsat_1_v5_gn_5_72701' => 'lsa', 'Lsat_1_v5_gn_8_91560' => 'lsa', 'Lsat_1_v5_gn_9_9640' => 'lsa', 'Manes.01G200600' => 'mes', 'Manes.01G200700' => 'mes', 'Manes.03G168900' => 'mes', 'Manes.03G169000' => 'mes', 'Manes.05G085801' => 'mes', 'Manes.05G086200' => 'mes', 'Manes.15G036700' => 'mes', 'Manes.15G036900' => 'mes', 'Mapoly0004s0172' => 'mpo', 'Mapoly0023s0001' => 'mpo', 'Mapoly0142s0012' => 'mpo', 'MBI01_g32854_MAGBIO' => 'mbi', 'MBI11_g24427_MAGBIO' => 'mbi', 'MBI11_g47319_MAGBIO' => 'mbi', 'MCO01G433' => 'mco', 'MD00G1187800' => 'mdo', 'MD04G1226500' => 'mdo', 'MD05G1203900' => 'mdo', 'MD10G1191100' => 'mdo', 'MD12G1243500' => 'mdo', 'MD13G1207000' => 'mdo', 'MD13G1207100' => 'mdo', 'MD16G1208600' => 'mdo', 'Medtr1g050352' => 'mtr', 'Medtr1g070385' => 'mtr', 'Medtr1g070450' => 'mtr', 'Medtr1g075200' => 'mtr', 'Medtr1g075250' => 'mtr', 'Medtr1g075260' => 'mtr', 'Medtr1g475250' => 'mtr', 'Medtr4g075450' => 'mtr', 'Medtr7g096300' => 'mtr', 'Medtr8g105110' => 'mtr', 'MELO3C006470.2' => 'cme', 'MELO3C006471.2' => 'cme', 'MELO3C020772.2' => 'cme', 'MELO3C026780.2' => 'cme', 'MELO3C026781.2' => 'cme', 'Migut.D00390' => 'egut', 'Migut.G00435' => 'egut', 'Migut.G00436' => 'egut', 'Migut.G00718' => 'egut', 'MSTRG.21891' => 'ama', 'MSTRG.26910' => 'ama', 'MSTRG.4099' => 'ama', 'MSTRG.9925' => 'ama', 'Nitab4.5_0000165g0010' => 'nta', 'Nitab4.5_0000209g0180' => 'nta', 'Nitab4.5_0000244g0440' => 'nta', 'Nitab4.5_0000525g0220' => 'nta', 'Nitab4.5_0001597g0020' => 'nta', 'Nitab4.5_0001878g0040' => 'nta', 'Nitab4.5_0001878g0060' => 'nta', 'Nitab4.5_0002838g0100' => 'nta', 'Nitab4.5_0002838g0120' => 'nta', 'Nitab4.5_0004798g0030' => 'nta', 'Nitab4.5_0005420g0010' => 'nta', 'Nitab4.5_0005507g0010' => 'nta', 'Nitab4.5_0005574g0020' => 'nta', 'Nitab4.5_0005838g0010' => 'nta', 'Nitab4.5_0010580g0020' => 'nta', 'Nn1g02599' => 'nnu', 'Nn1g02608' => 'nnu', 'Nn3g17742' => 'nnu', 'Nn3g19534' => 'nnu', 'Nn3g19535' => 'nnu', 'Oeu008790.1' => 'oeu', 'Oeu008792.1' => 'oeu', 'Oeu032590.1' => 'oeu', 'Oeu035349.1' => 'oeu', 'Oeu049791.1' => 'oeu', 'Os01g0774500' => 'osa', 'Os03g0628800' => 'osa', 'Os03g0798600' => 'osa', 'Os05g0508800' => 'osa', 'Peaxi162Scf00036g02018' => 'pax', 'Peaxi162Scf00578g00032' => 'pax', 'Peaxi162Scf00578g00317' => 'pax', 'Peaxi162Scf00785g00114' => 'pax', 'Peaxi162Scf00813g00119' => 'pax', 'Peaxi162Scf00906g00227' => 'pax', 'PGR004G0875' => 'pgr', 'PGR004G2424' => 'pgr', 'PGR031G1239' => 'pgr', 'PGR031G2474' => 'pgr', 'PGR044G0423' => 'pgr', 'PGSC0003DMG400001128' => 'stu', 'PGSC0003DMG400007336' => 'stu', 'PGSC0003DMG400016318' => 'stu', 'PGSC0003DMG400016319' => 'stu', 'PGSC0003DMG400018074' => 'stu', 'Phvul.001G157700' => 'pvu', 'Phvul.002G148550' => 'pvu', 'Phvul.002G320200' => 'pvu', 'Phvul.003G089200' => 'pvu', 'Phvul.007G126000' => 'pvu', 'Phvul.007G126100' => 'pvu', 'Phvul.007G178000' => 'pvu', 'Phvul.007G178200' => 'pvu', 'Potri.002G043000' => 'ptr', 'Potri.002G043200' => 'ptr', 'Potri.003G123750' => 'ptr', 'Potri.005G055401' => 'ptr', 'Potri.005G219700' => 'ptr', 'Potri.005G220000' => 'ptr', 'Potri.008G161901' => 'ptr', 'Potri.008G162000' => 'ptr', 'Potri.008G162400' => 'ptr', 'Potri.010G076900' => 'ptr', 'Pp3c12_9180' => 'ppa', 'Pp3c13_19770' => 'ppa', 'Pp3c14_22950' => 'ppa', 'Pp3c16_12160' => 'ppa', 'Pp3c27_7820' => 'ppa', 'Pp3c2_3490' => 'ppa', 'Pp3c3_23700' => 'ppa', 'Pp3c3_36520' => 'ppa', 'Pp3c4_15250' => 'ppa', 'PRCOL_00007002' => 'pco', 'Prupe.1G030600' => 'ppe', 'Prupe.1G030700' => 'ppe', 'Prupe.6G345200' => 'ppe', 'Prupe.8G230300' => 'ppe', 'Prupe.8G230500' => 'ppe', 'Psat3g059600' => 'psa', 'Psat5g200920' => 'psa', 'Psat6g056440' => 'psa', 'Psat6g057360' => 'psa', 'Psat6g134120' => 'psa', 'Psat6g134160' => 'psa', 'Psat7g008640' => 'psa', 'Psat7g185240' => 'psa', 'PSO017G1330' => 'pso', 'PSO063G6097' => 'pso', 'PSO170G0835' => 'pso', 'PSO170G2499' => 'pso', 'PSO210G5058' => 'pso', 'PSO210G6154' => 'pso', 'PSO585G0031' => 'pso', 'PSO832G0264' => 'pso', 'PSO832G4288' => 'pso', 'QL03p027355' => 'qlo', 'QL03p027430' => 'qlo', 'QL04p081380' => 'qlo', 'QL06p015642' => 'qlo', 'QL06p015650' => 'qlo', 'QL06p015686' => 'qlo', 'QL12p042927' => 'qlo', 'QL93p1863_0035' => 'qlo', 'RcHm_v2.0_Chr3g0450581' => 'rch', 'RcHm_v2.0_Chr4g0390371' => 'rch', 'RcHm_v2.0_Chr4g0390381' => 'rch', 'RcHm_v2.0_Chr4g0390491' => 'rch', 'RcHm_v2.0_Chr4g0390501' => 'rch', 'RcHm_v2.0_Chr6g0289231' => 'rch', 'Rhsim04G0190400' => 'rsi', 'Rhsim04G0190500' => 'rsi', 'Rhsim04G0190600' => 'rsi', 'Rhsim13G0031400' => 'rsi', 'Rhsim13G0165600' => 'rsi', 'RhsimUnG0114600' => 'rsi', 'RhsimUnG0114700' => 'rsi', 'Sabra02G0034800' => 'sbr', 'Sabra02G0035100' => 'sbr', 'Sabra05G0168600' => 'sbr', 'Sabra05G0168800' => 'sbr', 'Sabra08G0123700' => 'sbr', 'Sabra10G0031900' => 'sbr', 'Sabra13G0039000' => 'sbr', 'SalBow2G0782' => 'sbo', 'SalBow2G1403' => 'sbo', 'SalBow4G0074' => 'sbo', 'SalBow4G2635' => 'sbo', 'SalBow5G3010' => 'sbo', 'Sc05g0000870' => 'sci', 'Sc05g0000890' => 'sci', 'Sc13g0005000' => 'sci', 'Sc13g0005030' => 'sci', 'Sc19g0003790' => 'sci', 'Sc19g0003800' => 'sci', 'Sed0003467' => 'sed', 'Sed0009355' => 'sed', 'Sed0009894' => 'sed', 'Sed0011972' => 'sed', 'Sed0021483' => 'sed', 'Sed0021750' => 'sed', 'Sed0026279' => 'sed', 'SEGI_05312' => 'sgi', 'SEGI_10112' => 'sgi', 'SEGI_15835' => 'sgi', 'SEGI_30386' => 'sgi', 'SEGI_34122' => 'sgi', 'SEGI_35063' => 'sgi', 'SGA_v2.0_scaffold101G29794' => 'sas', 'SGA_v2.0_scaffold1G00573' => 'sas', 'SGA_v2.0_scaffold79G25637' => 'sas', 'SGA_v2.0_scaffold88G27283' => 'sas', 'SGA_v2.0_scaffold88G27285' => 'sas', 'SGA_v2.0_scaffold88G27331' => 'sas', 'SHI09937' => 'shi', 'SMO119G0302' => 'smo', 'SMO137G0231' => 'smo', 'SMO367G1151' => 'smo', 'Solyc02g082000.3' => 'sly', 'Solyc06g031670.3' => 'sly', 'Solyc06g053810.3' => 'sly', 'Solyc07g025457.1' => 'sly', 'Solyc08g059740.1' => 'sly', 'Solyc08g059750.3' => 'sly', 'Solyc09g083370.3' => 'sly', 'Solyc12g038950.3' => 'sly', 'Sopen02g026630' => 'spe', 'Sopen06g018930' => 'spe', 'Sopen06g018940' => 'spe', 'Sopen08g009460' => 'spe', 'Sopen09g032290' => 'spe', 'Sp1g03080' => 'spa', 'Sp1g03090' => 'spa', 'Sp1g05480' => 'spa', 'Sp2g07860' => 'spa', 'Sp2g08430' => 'spa', 'Sp2g08440' => 'spa', 'Sp2g26200' => 'spa', 'Sp4g13170' => 'spa', 'Sp6g33840' => 'spa', 'SpUn1204_0010' => 'spa', 'TAR365G0908' => 'tar', 'TAR381G1270' => 'tar', 'TAR381G1651' => 'tar', 'TAR625G1131' => 'tar', 'TAR633G0962' => 'tar', 'TAR633G1729' => 'tar', 'TAR633G1864' => 'tar', 'TAR636G0221' => 'tar', 'TAR636G0314' => 'tar', 'TAR636G3202' => 'tar', 'THA.LOC104800805' => 'tha', 'THA.LOC104801096' => 'tha', 'THA.LOC104801555' => 'tha', 'THA.LOC104808491' => 'tha', 'THA.LOC104808595' => 'tha', 'THA.LOC104815985' => 'tha', 'THA.LOC104822250' => 'tha', 'THA.LOC104826071' => 'tha', 'Thecc.01G265200' => 'tca', 'Thecc.01G265300' => 'tca', 'Thecc.01G265700' => 'tca', 'Thecc.03G109100' => 'tca', 'Thecc.04G245900' => 'tca', 'Thecc.04G246000' => 'tca', 'Thhalv10003334m.g' => 'esa', 'Thhalv10005508m.g' => 'esa', 'Thhalv10005643m.g' => 'esa', 'Thhalv10007316m.g' => 'esa', 'Thhalv10009006m.g' => 'esa', 'Thhalv10009309m.g' => 'esa', 'Thhalv10014917m.g' => 'esa', 'Thhalv10014919m.g' => 'esa', 'Thhalv10015393m.g' => 'esa', 'Thhalv10016515m.g' => 'esa', 'Thhalv10029242m.g' => 'esa', 'TPR.G16654' => 'tpr', 'TPR.G20589' => 'tpr', 'TPR.G23029' => 'tpr', 'TPR.G27731' => 'tpr', 'TPR.G28889' => 'tpr', 'TPR.G28899' => 'tpr', 'TPR.G30846' => 'tpr', 'TPR.G5452' => 'tpr', 'TPR.G5713' => 'tpr', 'TPR.G9046' => 'tpr', 'TPR.G9061' => 'tpr', 'TWI09G1075' => 'twi', 'TWI12G0806' => 'twi', 'TWI18G0108' => 'twi', 'TWI53G1361' => 'twi', 'TWI73G0185' => 'twi', 'TWI73G0427' => 'twi', 'unitig_37.g12001' => 'ugi', 'unitig_747.g21660' => 'ugi', 'unitig_748.g7232' => 'ugi', 'unitig_748.g7315' => 'ugi', 'unitig_85.g27262' => 'ugi', 'unitig_92.g28220' => 'ugi', 'vmacro02632' => 'vma', 'vmacro08410' => 'vma', 'vmacro08411' => 'vma', 'vmacro15407' => 'vma', 'VMungo0251G3619' => 'vmu', 'VMungo0720G1204' => 'vmu', 'VMungo0720G1918' => 'vmu', 'VMungo0720G2387' => 'vmu', 'VMungo0720G2961' => 'vmu', 'VMungo1215G2154' => 'vmu', 'VMungo1383G2411' => 'vmu', 'Zm00001eb051130' => 'zma', 'Zm00001eb116830' => 'zma', 'Zm00001eb116850' => 'zma', 'Zm00001eb151740' => 'zma', 'Zm00001eb292360' => 'zma', 'Zm00001eb301640' => 'zma' ) $gf_id = 'HOM05D000856' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000856' ) $data_identifier = 'HOM05D000856' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 13, 'ath' => (int) 10, 'atr' => (int) 1, 'acertr' => (int) 8, 'cqu' => (int) 6, 'bca' => (int) 21, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 11, 'car' => (int) 9, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 8, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 5, 'fan' => (int) 16, 'fve' => (int) 6, 'gma' => (int) 11, 'ghi' => (int) 19, 'gra' => (int) 9, 'vvi' => (int) 7, 'han' => (int) 17, 'cav' => (int) 5, 'hma' => (int) 2, 'vpl' => (int) 2, 'sun' => (int) 7, 'lal' => (int) 9, 'lja' => (int) 5, 'lonja' => (int) 9, 'lsa' => (int) 5, 'mes' => (int) 8, 'mpo' => (int) 3, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 10, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 15, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 9, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 9, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 6, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 5, 'spa' => (int) 10, 'tar' => (int) 10, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 11, 'tpr' => (int) 11, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 4, 'vmu' => (int) 7, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb301640' $species_info = array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ) $local_species = 'tha' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000856', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p00010' => 'bna', 'A03p04160' => 'bna', 'A03p17160' => 'bna', 'A04p23370' => 'bna', 'A05p14860' => 'bna', 'A08p37020' => 'bna', 'A09p08050' => 'bna', 'A09p66800' => 'bna', 'A09p67940' => 'bna', 'A10p02680' => 'bna', 'A10p05320' => 'bna', 'Aa31LG1G20560' => 'aar', 'Aa31LG1G20610' => 'aar', 'Aa31LG1G7810' => 'aar', 'Aa31LG5G3590' => 'aar', 'Aa31LG5G6140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3819' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4683' => 'aag', 'Actinidia04480' => 'ach', 'Actinidia05466' => 'ach', 'Actinidia08445' => 'ach', 'Actinidia21170' => 'ach', 'Actinidia24812' => 'ach', 'Actinidia24951' => 'ach', 'Actinidia40088' => 'ach', 'Ah.02g111660' => 'amhyb', 'Ah.11g048900' => 'amhyb', 'Ah.11g049910' => 'amhyb', 'AL1G13870' => 'aly', 'AL1G13880' => 'aly', 'AL1G16760' => 'aly', 'AL390U10020' => 'aly', 'AL4G25520' => 'aly', 'AL6G19890' => 'aly', 'AL6G19900' => 'aly', 'AL6G19910' => 'aly', 'AL8G40100' => 'aly', 'Aqoxy2G03562' => 'aox', 'Aqoxy5G00316' => 'aox', 'Aqoxy5G00926' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1628KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1H403S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2FU6SJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.882I6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8YRY2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YN1SN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AF70II' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZA8L1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F916KL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHRD8H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KTZ8QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S22EMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8M29T' => 'arhy', 'AT1G04270' => 'ath', 'AT1G04280' => 'ath', 'AT1G06750' => 'ath', 'AT1G33850' => 'ath', 'AT2G30630' => 'ath', 'AT5G09490' => 'ath', 'AT5G09500' => 'ath', 'AT5G09510' => 'ath', 'AT5G43640' => 'ath', 'AT5G63070' => 'ath', 'ATR0605G315' => 'atr', 'Atru.chr11.175' => 'acertr', 'Atru.chr11.653' => 'acertr', 'Atru.chr3.1616' => 'acertr', 'Atru.chr4.2230' => 'acertr', 'Atru.chr4.2232' => 'acertr', 'Atru.chr5.1598' => 'acertr', 'Atru.chr5.1600' => 'acertr', 'Atru.chr5.2188' => 'acertr', 'AUR62008326' => 'cqu', 'AUR62011922' => 'cqu', 'AUR62011924' => 'cqu', 'AUR62021771' => 'cqu', 'AUR62032237' => 'cqu', 'AUR62032240' => 'cqu', 'BcaB01g05572' => 'bca', 'BcaB02g10337' => 'bca', 'BcaB04g19944' => 'bca', 'BcaB05g21548' => 'bca', 'BcaB05g21549' => 'bca', 'BcaB05g23227' => 'bca', 'BcaB06g26256' => 'bca', 'BcaB06g26257' => 'bca', 'BcaB06g28379' => 'bca', 'BcaC02g11159' => 'bca', 'BcaC03g13258' => 'bca', 'BcaC03g13259' => 'bca', 'BcaC05g24456' => 'bca', 'BcaC05g24457' => 'bca', 'BcaC07g36922' => 'bca', 'BcaC07g36923' => 'bca', 'BcaC07g42050' => 'bca', 'BcaC07g42176' => 'bca', 'BcaC07g42195' => 'bca', 'BcaC07g42196' => 'bca', 'BcaNung06674' => 'bca', 'BolC2t06351H' => 'bol', 'BolC2t06352H' => 'bol', 'BolC3t12993H' => 'bol', 'BolC4t23525H' => 'bol', 'BolC4t27475H' => 'bol', 'BolC5t29025H' => 'bol', 'BolC5t29026H' => 'bol', 'BolC8t46898H' => 'bol', 'BolC8t46899H' => 'bol', 'BolC8t52630H' => 'bol', 'BolC8t52765H' => 'bol', 'BolC9t53824H' => 'bol', 'BraA03t09760Z' => 'bra', 'BraA03t10990Z' => 'bra', 'BraA05t20413Z' => 'bra', 'BraA08t35602Z' => 'bra', 'BraA09t36458Z' => 'bra', 'BraA09t42018Z' => 'bra', 'BraA09t42129Z' => 'bra', 'BraA10t42536Z' => 'bra', 'BraA10t42537Z' => 'bra', 'C01p10690' => 'bna', 'C02p03890' => 'bna', 'C02p03900' => 'bna', 'C03p04620' => 'bna', 'C04p19870' => 'bna', 'C04p59670' => 'bna', 'C05p02460' => 'bna', 'C05p02470' => 'bna', 'C08p00980' => 'bna', 'C08p00990' => 'bna', 'C08p51030' => 'bna', 'C08p52360' => 'bna', 'C09p09120' => 'bna', 'CAN.G19.15' => 'can', 'CAN.G251.10' => 'can', 'CAN.G251.9' => 'can', 'CAN.G398.24' => 'can', 'CAN.G410.32' => 'can', 'CAN.G881.2' => 'can', 'CANSAT01G3025' => 'cansat', 'CANSAT78G1211' => 'cansat', 'CANSAT78G1218' => 'cansat', 'CANSAT78G1521' => 'cansat', 'CANSAT78G1670' => 'cansat', 'CARHR003600' => 'chi', 'CARHR003610' => 'chi', 'CARHR006290' => 'chi', 'CARHR006430' => 'chi', 'CARHR124110' => 'chi', 'CARHR203870' => 'chi', 'CARHR203880' => 'chi', 'CARHR203890' => 'chi', 'CARHR276880' => 'chi', 'Carub.0001s0346' => 'cru', 'Carub.0001s0347' => 'cru', 'Carub.0001s0607' => 'cru', 'Carub.0003s2768' => 'cru', 'Carub.0003s2769' => 'cru', 'Carub.0004s1178' => 'cru', 'Carub.0006s0806' => 'cru', 'Carub.0006s0807' => 'cru', 'Carub.0006s0808' => 'cru', 'Carub.0008s0501' => 'cru', 'Carub.0008s2379' => 'cru', 'Ca_08655_v3' => 'car', 'Ca_08922_v3' => 'car', 'Ca_08923_v3' => 'car', 'Ca_09119_v3' => 'car', 'Ca_09703_v3' => 'car', 'Ca_09705_v3' => 'car', 'Ca_09835_v3' => 'car', 'Ca_26403_v3' => 'car', 'Ca_30719_v3' => 'car', 'CBR_g17958' => 'cbr', 'CBR_g40516' => 'cbr', 'Cc00_g05350' => 'ccan', 'Cc01_g18690' => 'ccan', 'Cc03_g04830' => 'ccan', 'Cc03_g04850' => 'ccan', 'CDE02G4469' => 'cde', 'CDE06G0883' => 'cde', 'CDE06G1295' => 'cde', 'CDE06G1390' => 'cde', 'CDE07G0584' => 'cde', 'CDE07G1084' => 'cde', 'CDE08G1259' => 'cde', 'Cfa002341' => 'cfa', 'Cfa024337' => 'cfa', 'Ciclev10004749m.g' => 'ccl', 'Ciclev10006127m.g' => 'ccl', 'Ciclev10019720m.g' => 'ccl', 'Ciclev10022652m.g' => 'ccl', 'CiPaw.01G190400' => 'cil', 'CiPaw.01G190500' => 'cil', 'CiPaw.02G116400' => 'cil', 'CiPaw.02G116500' => 'cil', 'CiPaw.04G183000' => 'cil', 'CiPaw.04G183300' => 'cil', 'ClCG05G004610' => 'cla', 'ClCG05G004620' => 'cla', 'ClCG06G006730' => 'cla', 'ClCG06G006740' => 'cla', 'ClCG11G003690' => 'cla', 'COL.COLO4_08276' => 'col', 'COL.COLO4_08277' => 'col', 'COL.COLO4_15787' => 'col', 'COL.COLO4_15789' => 'col', 'Cpa.g.c44815' => 'cpa', 'Cpa.g.sc52.144' => 'cpa', 'Cpa.g.sc58.46' => 'cpa', 'Cpa.g.sc58.47' => 'cpa', 'Cre08.g360900' => 'cre', 'CsaV3_2G013030' => 'csa', 'CsaV3_2G013050' => 'csa', 'CsaV3_2G015620' => 'csa', 'CsaV3_3G012590' => 'csa', 'CsaV3_3G012600' => 'csa', 'CSS0001641' => 'camsi', 'CSS0008310' => 'camsi', 'CSS0013011' => 'camsi', 'CSS0017147' => 'camsi', 'CSS0022970' => 'camsi', 'CSS0025655' => 'camsi', 'CSS0028665' => 'camsi', 'CSS0029117' => 'camsi', 'CSS0032024' => 'camsi', 'CSS0039681' => 'camsi', 'CSS0046516' => 'camsi', 'CSS0050307' => 'camsi', 'DCAR_005871' => 'dca', 'DCAR_007342' => 'dca', 'DCAR_024228' => 'dca', 'DCAR_027277' => 'dca', 'DCAR_030718' => 'dca', 'Dinv20287' => 'din', 'Dinv22461' => 'din', 'Dinv22464' => 'din', 'Dinv29912' => 'din', 'Dinv29913' => 'din', 'Dinv34580' => 'din', 'Dinv34582' => 'din', 'Dinv44632' => 'din', 'Duzib052G0266' => 'dzi', 'Duzib133G0907' => 'dzi', 'Duzib133G1034' => 'dzi', 'Duzib138G0207' => 'dzi', 'Duzib138G0491' => 'dzi', 'Duzib151G0812' => 'dzi', 'Duzib151G1166' => 'dzi', 'Duzib168G0192' => 'dzi', 'Duzib211G0077' => 'dzi', 'Duzib212G0429' => 'dzi', 'Duzib212G0472' => 'dzi', 'ECA233G2617' => 'eca', 'ECA236G4188' => 'eca', 'ECA240G0936' => 'eca', 'ECA240G1129' => 'eca', 'ECA247G0623' => 'eca', 'EL10Ac5g10451' => 'bvu', 'EL10Ac5g10453' => 'bvu', 'EL10Ac5g10894' => 'bvu', 'Eucgr.H00192' => 'egr', 'Eucgr.H00193' => 'egr', 'Eucgr.H00194' => 'egr', 'Eucgr.J01562' => 'egr', 'Eucgr.K03301' => 'egr', 'FAN02G0632' => 'fan', 'FAN05G5378' => 'fan', 'FAN09G3247' => 'fan', 'FAN12G0435' => 'fan', 'FAN12G2426' => 'fan', 'FAN14G1707' => 'fan', 'FAN14G4725' => 'fan', 'FAN15G2071' => 'fan', 'FAN17G3065' => 'fan', 'FAN19G1376' => 'fan', 'FAN20G0354' => 'fan', 'FAN20G2429' => 'fan', 'FAN20G2658' => 'fan', 'FAN24G2343' => 'fan', 'FAN27G2362' => 'fan', 'FAN28G1765' => 'fan', 'FvH4_1g16020' => 'fve', 'FvH4_2g04890' => 'fve', 'FvH4_2g22270' => 'fve', 'FvH4_4g02630' => 'fve', 'FvH4_4g02640' => 'fve', 'FvH4_6g02650' => 'fve', 'Glyma.02G140600' => 'gma', 'Glyma.03G159900' => 'gma', 'Glyma.05G234800' => 'gma', 'Glyma.07G269600' => 'gma', 'Glyma.08G042300' => 'gma', 'Glyma.10G033500' => 'gma', 'Glyma.10G185200' => 'gma', 'Glyma.17G004300' => 'gma', 'Glyma.19G161900' => 'gma', 'Glyma.20G205100' => 'gma', 'Glyma.20G205200' => 'gma', 'Gohir.A01G139101' => 'ghi', 'Gohir.A02G035600' => 'ghi', 'Gohir.A02G117901' => 'ghi', 'Gohir.A07G210100' => 'ghi', 'Gohir.A07G210200' => 'ghi', 'Gohir.A08G061100' => 'ghi', 'Gohir.A09G223000' => 'ghi', 'Gohir.A09G223100' => 'ghi', 'Gohir.A10G113900' => 'ghi', 'Gohir.A10G114000' => 'ghi', 'Gohir.D02G042300' => 'ghi', 'Gohir.D07G216100' => 'ghi', 'Gohir.D07G216200' => 'ghi', 'Gohir.D08G070400' => 'ghi', 'Gohir.D09G225000' => 'ghi', 'Gohir.D09G225100' => 'ghi', 'Gohir.D10G152300' => 'ghi', 'Gohir.D10G153200' => 'ghi', 'Gohir.D11G133701' => 'ghi', 'Gorai.004G074100' => 'gra', 'Gorai.005G046800' => 'gra', 'Gorai.006G246500' => 'gra', 'Gorai.006G246600' => 'gra', 'Gorai.007G142900' => 'gra', 'Gorai.011G171000' => 'gra', 'Gorai.011G171100' => 'gra', 'Gorai.013G104300' => 'gra', 'Gorai.013G104400' => 'gra', 'GSVIVG01000754001' => 'vvi', 'GSVIVG01000756001' => 'vvi', 'GSVIVG01010903001' => 'vvi', 'GSVIVG01017623001' => 'vvi', 'GSVIVG01018113001' => 'vvi', 'GSVIVG01018116001' => 'vvi', 'GSVIVG01018118001' => 'vvi', 'HanXRQChr03g0076211' => 'han', 'HanXRQChr03g0092431' => 'han', 'HanXRQChr03g0092441' => 'han', 'HanXRQChr03g0092591' => 'han', 'HanXRQChr03g0092671' => 'han', 'HanXRQChr03g0092681' => 'han', 'HanXRQChr03g0092691' => 'han', 'HanXRQChr03g0092701' => 'han', 'HanXRQChr03g0092721' => 'han', 'HanXRQChr03g0092731' => 'han', 'HanXRQChr04g0113681' => 'han', 'HanXRQChr10g0281371' => 'han', 'HanXRQChr11g0337141' => 'han', 'HanXRQChr13g0424521' => 'han', 'HanXRQChr13g0424531' => 'han', 'HanXRQChr13g0424541' => 'han', 'HanXRQChr16g0498221' => 'han', 'Haze_04377' => 'cav', 'Haze_11298' => 'cav', 'Haze_24547' => 'cav', 'Haze_24550' => 'cav', 'Haze_26587' => 'cav', 'Hma1.2p1_0650F.1_g195410' => 'hma', 'Hma1.2p1_0893F.1_g233470' => 'hma', 'HPP92_006508' => 'vpl', 'HPP92_024780' => 'vpl', 'Hund02688' => 'sun', 'Hund09380' => 'sun', 'Hund09381' => 'sun', 'Hund09832' => 'sun', 'Hund09833' => 'sun', 'Hund11351' => 'sun', 'Hund11513' => 'sun', 'Lalb_Chr06g0162591' => 'lal', 'Lalb_Chr06g0162601' => 'lal', 'Lalb_Chr06g0169321' => 'lal', 'Lalb_Chr09g0330951' => 'lal', 'Lalb_Chr16g0387631' => 'lal', 'Lalb_Chr21g0306241' => 'lal', 'Lalb_Chr25g0290051' => 'lal', 'Lalb_Chr25g0290061' => 'lal', 'Lalb_Chr25g0290071' => 'lal', 'Lj1g0003876' => 'lja', 'Lj1P1207T36' => 'lonja', 'Lj2C1156G12' => 'lonja', 'Lj3A793G39' => 'lonja', 'Lj3C580G2' => 'lonja', 'Lj3C780G2' => 'lonja', 'Lj3C780T4' => 'lonja', 'Lj3C793G9' => 'lonja', 'Lj4g0012960' => 'lja', 'Lj5g0021252' => 'lja', 'Lj5g0021484' => 'lja', 'Lj5g0024528' => 'lja', 'Lj6A399T12' => 'lonja', 'Lj6A656G65' => 'lonja', 'Lsat_1_v5_gn_3_125500' => 'lsa', 'Lsat_1_v5_gn_3_125540' => 'lsa', 'Lsat_1_v5_gn_5_72701' => 'lsa', 'Lsat_1_v5_gn_8_91560' => 'lsa', 'Lsat_1_v5_gn_9_9640' => 'lsa', 'Manes.01G200600' => 'mes', 'Manes.01G200700' => 'mes', 'Manes.03G168900' => 'mes', 'Manes.03G169000' => 'mes', 'Manes.05G085801' => 'mes', 'Manes.05G086200' => 'mes', 'Manes.15G036700' => 'mes', 'Manes.15G036900' => 'mes', 'Mapoly0004s0172' => 'mpo', 'Mapoly0023s0001' => 'mpo', 'Mapoly0142s0012' => 'mpo', 'MBI01_g32854_MAGBIO' => 'mbi', 'MBI11_g24427_MAGBIO' => 'mbi', 'MBI11_g47319_MAGBIO' => 'mbi', 'MCO01G433' => 'mco', 'MD00G1187800' => 'mdo', 'MD04G1226500' => 'mdo', 'MD05G1203900' => 'mdo', 'MD10G1191100' => 'mdo', 'MD12G1243500' => 'mdo', 'MD13G1207000' => 'mdo', 'MD13G1207100' => 'mdo', 'MD16G1208600' => 'mdo', 'Medtr1g050352' => 'mtr', 'Medtr1g070385' => 'mtr', 'Medtr1g070450' => 'mtr', 'Medtr1g075200' => 'mtr', 'Medtr1g075250' => 'mtr', 'Medtr1g075260' => 'mtr', 'Medtr1g475250' => 'mtr', 'Medtr4g075450' => 'mtr', 'Medtr7g096300' => 'mtr', 'Medtr8g105110' => 'mtr', 'MELO3C006470.2' => 'cme', 'MELO3C006471.2' => 'cme', 'MELO3C020772.2' => 'cme', 'MELO3C026780.2' => 'cme', 'MELO3C026781.2' => 'cme', 'Migut.D00390' => 'egut', 'Migut.G00435' => 'egut', 'Migut.G00436' => 'egut', 'Migut.G00718' => 'egut', 'MSTRG.21891' => 'ama', 'MSTRG.26910' => 'ama', 'MSTRG.4099' => 'ama', 'MSTRG.9925' => 'ama', 'Nitab4.5_0000165g0010' => 'nta', 'Nitab4.5_0000209g0180' => 'nta', 'Nitab4.5_0000244g0440' => 'nta', 'Nitab4.5_0000525g0220' => 'nta', 'Nitab4.5_0001597g0020' => 'nta', 'Nitab4.5_0001878g0040' => 'nta', 'Nitab4.5_0001878g0060' => 'nta', 'Nitab4.5_0002838g0100' => 'nta', 'Nitab4.5_0002838g0120' => 'nta', 'Nitab4.5_0004798g0030' => 'nta', 'Nitab4.5_0005420g0010' => 'nta', 'Nitab4.5_0005507g0010' => 'nta', 'Nitab4.5_0005574g0020' => 'nta', 'Nitab4.5_0005838g0010' => 'nta', 'Nitab4.5_0010580g0020' => 'nta', 'Nn1g02599' => 'nnu', 'Nn1g02608' => 'nnu', 'Nn3g17742' => 'nnu', 'Nn3g19534' => 'nnu', 'Nn3g19535' => 'nnu', 'Oeu008790.1' => 'oeu', 'Oeu008792.1' => 'oeu', 'Oeu032590.1' => 'oeu', 'Oeu035349.1' => 'oeu', 'Oeu049791.1' => 'oeu', 'Os01g0774500' => 'osa', 'Os03g0628800' => 'osa', 'Os03g0798600' => 'osa', 'Os05g0508800' => 'osa', 'Peaxi162Scf00036g02018' => 'pax', 'Peaxi162Scf00578g00032' => 'pax', 'Peaxi162Scf00578g00317' => 'pax', 'Peaxi162Scf00785g00114' => 'pax', 'Peaxi162Scf00813g00119' => 'pax', 'Peaxi162Scf00906g00227' => 'pax', 'PGR004G0875' => 'pgr', 'PGR004G2424' => 'pgr', 'PGR031G1239' => 'pgr', 'PGR031G2474' => 'pgr', 'PGR044G0423' => 'pgr', 'PGSC0003DMG400001128' => 'stu', 'PGSC0003DMG400007336' => 'stu', 'PGSC0003DMG400016318' => 'stu', 'PGSC0003DMG400016319' => 'stu', 'PGSC0003DMG400018074' => 'stu', 'Phvul.001G157700' => 'pvu', 'Phvul.002G148550' => 'pvu', 'Phvul.002G320200' => 'pvu', 'Phvul.003G089200' => 'pvu', 'Phvul.007G126000' => 'pvu', 'Phvul.007G126100' => 'pvu', 'Phvul.007G178000' => 'pvu', 'Phvul.007G178200' => 'pvu', 'Potri.002G043000' => 'ptr', 'Potri.002G043200' => 'ptr', 'Potri.003G123750' => 'ptr', 'Potri.005G055401' => 'ptr', 'Potri.005G219700' => 'ptr', 'Potri.005G220000' => 'ptr', 'Potri.008G161901' => 'ptr', 'Potri.008G162000' => 'ptr', 'Potri.008G162400' => 'ptr', 'Potri.010G076900' => 'ptr', 'Pp3c12_9180' => 'ppa', 'Pp3c13_19770' => 'ppa', 'Pp3c14_22950' => 'ppa', 'Pp3c16_12160' => 'ppa', 'Pp3c27_7820' => 'ppa', 'Pp3c2_3490' => 'ppa', 'Pp3c3_23700' => 'ppa', 'Pp3c3_36520' => 'ppa', 'Pp3c4_15250' => 'ppa', 'PRCOL_00007002' => 'pco', 'Prupe.1G030600' => 'ppe', 'Prupe.1G030700' => 'ppe', 'Prupe.6G345200' => 'ppe', 'Prupe.8G230300' => 'ppe', 'Prupe.8G230500' => 'ppe', 'Psat3g059600' => 'psa', 'Psat5g200920' => 'psa', 'Psat6g056440' => 'psa', 'Psat6g057360' => 'psa', 'Psat6g134120' => 'psa', 'Psat6g134160' => 'psa', 'Psat7g008640' => 'psa', 'Psat7g185240' => 'psa', 'PSO017G1330' => 'pso', 'PSO063G6097' => 'pso', 'PSO170G0835' => 'pso', 'PSO170G2499' => 'pso', 'PSO210G5058' => 'pso', 'PSO210G6154' => 'pso', 'PSO585G0031' => 'pso', 'PSO832G0264' => 'pso', 'PSO832G4288' => 'pso', 'QL03p027355' => 'qlo', 'QL03p027430' => 'qlo', 'QL04p081380' => 'qlo', 'QL06p015642' => 'qlo', 'QL06p015650' => 'qlo', 'QL06p015686' => 'qlo', 'QL12p042927' => 'qlo', 'QL93p1863_0035' => 'qlo', 'RcHm_v2.0_Chr3g0450581' => 'rch', 'RcHm_v2.0_Chr4g0390371' => 'rch', 'RcHm_v2.0_Chr4g0390381' => 'rch', 'RcHm_v2.0_Chr4g0390491' => 'rch', 'RcHm_v2.0_Chr4g0390501' => 'rch', 'RcHm_v2.0_Chr6g0289231' => 'rch', 'Rhsim04G0190400' => 'rsi', 'Rhsim04G0190500' => 'rsi', 'Rhsim04G0190600' => 'rsi', 'Rhsim13G0031400' => 'rsi', 'Rhsim13G0165600' => 'rsi', 'RhsimUnG0114600' => 'rsi', 'RhsimUnG0114700' => 'rsi', 'Sabra02G0034800' => 'sbr', 'Sabra02G0035100' => 'sbr', 'Sabra05G0168600' => 'sbr', 'Sabra05G0168800' => 'sbr', 'Sabra08G0123700' => 'sbr', 'Sabra10G0031900' => 'sbr', 'Sabra13G0039000' => 'sbr', 'SalBow2G0782' => 'sbo', 'SalBow2G1403' => 'sbo', 'SalBow4G0074' => 'sbo', 'SalBow4G2635' => 'sbo', 'SalBow5G3010' => 'sbo', 'Sc05g0000870' => 'sci', 'Sc05g0000890' => 'sci', 'Sc13g0005000' => 'sci', 'Sc13g0005030' => 'sci', 'Sc19g0003790' => 'sci', 'Sc19g0003800' => 'sci', 'Sed0003467' => 'sed', 'Sed0009355' => 'sed', 'Sed0009894' => 'sed', 'Sed0011972' => 'sed', 'Sed0021483' => 'sed', 'Sed0021750' => 'sed', 'Sed0026279' => 'sed', 'SEGI_05312' => 'sgi', 'SEGI_10112' => 'sgi', 'SEGI_15835' => 'sgi', 'SEGI_30386' => 'sgi', 'SEGI_34122' => 'sgi', 'SEGI_35063' => 'sgi', 'SGA_v2.0_scaffold101G29794' => 'sas', 'SGA_v2.0_scaffold1G00573' => 'sas', 'SGA_v2.0_scaffold79G25637' => 'sas', 'SGA_v2.0_scaffold88G27283' => 'sas', 'SGA_v2.0_scaffold88G27285' => 'sas', 'SGA_v2.0_scaffold88G27331' => 'sas', 'SHI09937' => 'shi', 'SMO119G0302' => 'smo', 'SMO137G0231' => 'smo', 'SMO367G1151' => 'smo', 'Solyc02g082000.3' => 'sly', 'Solyc06g031670.3' => 'sly', 'Solyc06g053810.3' => 'sly', 'Solyc07g025457.1' => 'sly', 'Solyc08g059740.1' => 'sly', 'Solyc08g059750.3' => 'sly', 'Solyc09g083370.3' => 'sly', 'Solyc12g038950.3' => 'sly', 'Sopen02g026630' => 'spe', 'Sopen06g018930' => 'spe', 'Sopen06g018940' => 'spe', 'Sopen08g009460' => 'spe', 'Sopen09g032290' => 'spe', 'Sp1g03080' => 'spa', 'Sp1g03090' => 'spa', 'Sp1g05480' => 'spa', 'Sp2g07860' => 'spa', 'Sp2g08430' => 'spa', 'Sp2g08440' => 'spa', 'Sp2g26200' => 'spa', 'Sp4g13170' => 'spa', 'Sp6g33840' => 'spa', 'SpUn1204_0010' => 'spa', 'TAR365G0908' => 'tar', 'TAR381G1270' => 'tar', 'TAR381G1651' => 'tar', 'TAR625G1131' => 'tar', 'TAR633G0962' => 'tar', 'TAR633G1729' => 'tar', 'TAR633G1864' => 'tar', 'TAR636G0221' => 'tar', 'TAR636G0314' => 'tar', 'TAR636G3202' => 'tar', 'THA.LOC104800805' => 'tha', 'THA.LOC104801096' => 'tha', 'THA.LOC104801555' => 'tha', 'THA.LOC104808491' => 'tha', 'THA.LOC104808595' => 'tha', 'THA.LOC104815985' => 'tha', 'THA.LOC104822250' => 'tha', 'THA.LOC104826071' => 'tha', 'Thecc.01G265200' => 'tca', 'Thecc.01G265300' => 'tca', 'Thecc.01G265700' => 'tca', 'Thecc.03G109100' => 'tca', 'Thecc.04G245900' => 'tca', 'Thecc.04G246000' => 'tca', 'Thhalv10003334m.g' => 'esa', 'Thhalv10005508m.g' => 'esa', 'Thhalv10005643m.g' => 'esa', 'Thhalv10007316m.g' => 'esa', 'Thhalv10009006m.g' => 'esa', 'Thhalv10009309m.g' => 'esa', 'Thhalv10014917m.g' => 'esa', 'Thhalv10014919m.g' => 'esa', 'Thhalv10015393m.g' => 'esa', 'Thhalv10016515m.g' => 'esa', 'Thhalv10029242m.g' => 'esa', 'TPR.G16654' => 'tpr', 'TPR.G20589' => 'tpr', 'TPR.G23029' => 'tpr', 'TPR.G27731' => 'tpr', 'TPR.G28889' => 'tpr', 'TPR.G28899' => 'tpr', 'TPR.G30846' => 'tpr', 'TPR.G5452' => 'tpr', 'TPR.G5713' => 'tpr', 'TPR.G9046' => 'tpr', 'TPR.G9061' => 'tpr', 'TWI09G1075' => 'twi', 'TWI12G0806' => 'twi', 'TWI18G0108' => 'twi', 'TWI53G1361' => 'twi', 'TWI73G0185' => 'twi', 'TWI73G0427' => 'twi', 'unitig_37.g12001' => 'ugi', 'unitig_747.g21660' => 'ugi', 'unitig_748.g7232' => 'ugi', 'unitig_748.g7315' => 'ugi', 'unitig_85.g27262' => 'ugi', 'unitig_92.g28220' => 'ugi', 'vmacro02632' => 'vma', 'vmacro08410' => 'vma', 'vmacro08411' => 'vma', 'vmacro15407' => 'vma', 'VMungo0251G3619' => 'vmu', 'VMungo0720G1204' => 'vmu', 'VMungo0720G1918' => 'vmu', 'VMungo0720G2387' => 'vmu', 'VMungo0720G2961' => 'vmu', 'VMungo1215G2154' => 'vmu', 'VMungo1383G2411' => 'vmu', 'Zm00001eb051130' => 'zma', 'Zm00001eb116830' => 'zma', 'Zm00001eb116850' => 'zma', 'Zm00001eb151740' => 'zma', 'Zm00001eb292360' => 'zma', 'Zm00001eb301640' => 'zma' ), 'gf_id' => 'HOM05D000856', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000856' ), 'data_identifier' => 'HOM05D000856', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000856', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p00010' => 'bna', 'A03p04160' => 'bna', 'A03p17160' => 'bna', 'A04p23370' => 'bna', 'A05p14860' => 'bna', 'A08p37020' => 'bna', 'A09p08050' => 'bna', 'A09p66800' => 'bna', 'A09p67940' => 'bna', 'A10p02680' => 'bna', 'A10p05320' => 'bna', 'Aa31LG1G20560' => 'aar', 'Aa31LG1G20610' => 'aar', 'Aa31LG1G7810' => 'aar', 'Aa31LG5G3590' => 'aar', 'Aa31LG5G6140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3819' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4683' => 'aag', 'Actinidia04480' => 'ach', 'Actinidia05466' => 'ach', 'Actinidia08445' => 'ach', 'Actinidia21170' => 'ach', 'Actinidia24812' => 'ach', 'Actinidia24951' => 'ach', 'Actinidia40088' => 'ach', 'Ah.02g111660' => 'amhyb', 'Ah.11g048900' => 'amhyb', 'Ah.11g049910' => 'amhyb', 'AL1G13870' => 'aly', 'AL1G13880' => 'aly', 'AL1G16760' => 'aly', 'AL390U10020' => 'aly', 'AL4G25520' => 'aly', 'AL6G19890' => 'aly', 'AL6G19900' => 'aly', 'AL6G19910' => 'aly', 'AL8G40100' => 'aly', 'Aqoxy2G03562' => 'aox', 'Aqoxy5G00316' => 'aox', 'Aqoxy5G00926' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1628KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1H403S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2FU6SJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.882I6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8YRY2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YN1SN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AF70II' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZA8L1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F916KL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHRD8H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KTZ8QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S22EMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8M29T' => 'arhy', 'AT1G04270' => 'ath', 'AT1G04280' => 'ath', 'AT1G06750' => 'ath', 'AT1G33850' => 'ath', 'AT2G30630' => 'ath', 'AT5G09490' => 'ath', 'AT5G09500' => 'ath', 'AT5G09510' => 'ath', 'AT5G43640' => 'ath', 'AT5G63070' => 'ath', 'ATR0605G315' => 'atr', 'Atru.chr11.175' => 'acertr', 'Atru.chr11.653' => 'acertr', 'Atru.chr3.1616' => 'acertr', 'Atru.chr4.2230' => 'acertr', 'Atru.chr4.2232' => 'acertr', 'Atru.chr5.1598' => 'acertr', 'Atru.chr5.1600' => 'acertr', 'Atru.chr5.2188' => 'acertr', 'AUR62008326' => 'cqu', 'AUR62011922' => 'cqu', 'AUR62011924' => 'cqu', 'AUR62021771' => 'cqu', 'AUR62032237' => 'cqu', 'AUR62032240' => 'cqu', 'BcaB01g05572' => 'bca', 'BcaB02g10337' => 'bca', 'BcaB04g19944' => 'bca', 'BcaB05g21548' => 'bca', 'BcaB05g21549' => 'bca', 'BcaB05g23227' => 'bca', 'BcaB06g26256' => 'bca', 'BcaB06g26257' => 'bca', 'BcaB06g28379' => 'bca', 'BcaC02g11159' => 'bca', 'BcaC03g13258' => 'bca', 'BcaC03g13259' => 'bca', 'BcaC05g24456' => 'bca', 'BcaC05g24457' => 'bca', 'BcaC07g36922' => 'bca', 'BcaC07g36923' => 'bca', 'BcaC07g42050' => 'bca', 'BcaC07g42176' => 'bca', 'BcaC07g42195' => 'bca', 'BcaC07g42196' => 'bca', 'BcaNung06674' => 'bca', 'BolC2t06351H' => 'bol', 'BolC2t06352H' => 'bol', 'BolC3t12993H' => 'bol', 'BolC4t23525H' => 'bol', 'BolC4t27475H' => 'bol', 'BolC5t29025H' => 'bol', 'BolC5t29026H' => 'bol', 'BolC8t46898H' => 'bol', 'BolC8t46899H' => 'bol', 'BolC8t52630H' => 'bol', 'BolC8t52765H' => 'bol', 'BolC9t53824H' => 'bol', 'BraA03t09760Z' => 'bra', 'BraA03t10990Z' => 'bra', 'BraA05t20413Z' => 'bra', 'BraA08t35602Z' => 'bra', 'BraA09t36458Z' => 'bra', 'BraA09t42018Z' => 'bra', 'BraA09t42129Z' => 'bra', 'BraA10t42536Z' => 'bra', 'BraA10t42537Z' => 'bra', 'C01p10690' => 'bna', 'C02p03890' => 'bna', 'C02p03900' => 'bna', 'C03p04620' => 'bna', 'C04p19870' => 'bna', 'C04p59670' => 'bna', 'C05p02460' => 'bna', 'C05p02470' => 'bna', 'C08p00980' => 'bna', 'C08p00990' => 'bna', 'C08p51030' => 'bna', 'C08p52360' => 'bna', 'C09p09120' => 'bna', 'CAN.G19.15' => 'can', 'CAN.G251.10' => 'can', 'CAN.G251.9' => 'can', 'CAN.G398.24' => 'can', 'CAN.G410.32' => 'can', 'CAN.G881.2' => 'can', 'CANSAT01G3025' => 'cansat', 'CANSAT78G1211' => 'cansat', 'CANSAT78G1218' => 'cansat', 'CANSAT78G1521' => 'cansat', 'CANSAT78G1670' => 'cansat', 'CARHR003600' => 'chi', 'CARHR003610' => 'chi', 'CARHR006290' => 'chi', 'CARHR006430' => 'chi', 'CARHR124110' => 'chi', 'CARHR203870' => 'chi', 'CARHR203880' => 'chi', 'CARHR203890' => 'chi', 'CARHR276880' => 'chi', 'Carub.0001s0346' => 'cru', 'Carub.0001s0347' => 'cru', 'Carub.0001s0607' => 'cru', 'Carub.0003s2768' => 'cru', 'Carub.0003s2769' => 'cru', 'Carub.0004s1178' => 'cru', 'Carub.0006s0806' => 'cru', 'Carub.0006s0807' => 'cru', 'Carub.0006s0808' => 'cru', 'Carub.0008s0501' => 'cru', 'Carub.0008s2379' => 'cru', 'Ca_08655_v3' => 'car', 'Ca_08922_v3' => 'car', 'Ca_08923_v3' => 'car', 'Ca_09119_v3' => 'car', 'Ca_09703_v3' => 'car', 'Ca_09705_v3' => 'car', 'Ca_09835_v3' => 'car', 'Ca_26403_v3' => 'car', 'Ca_30719_v3' => 'car', 'CBR_g17958' => 'cbr', 'CBR_g40516' => 'cbr', 'Cc00_g05350' => 'ccan', 'Cc01_g18690' => 'ccan', 'Cc03_g04830' => 'ccan', 'Cc03_g04850' => 'ccan', 'CDE02G4469' => 'cde', 'CDE06G0883' => 'cde', 'CDE06G1295' => 'cde', 'CDE06G1390' => 'cde', 'CDE07G0584' => 'cde', 'CDE07G1084' => 'cde', 'CDE08G1259' => 'cde', 'Cfa002341' => 'cfa', 'Cfa024337' => 'cfa', 'Ciclev10004749m.g' => 'ccl', 'Ciclev10006127m.g' => 'ccl', 'Ciclev10019720m.g' => 'ccl', 'Ciclev10022652m.g' => 'ccl', 'CiPaw.01G190400' => 'cil', 'CiPaw.01G190500' => 'cil', 'CiPaw.02G116400' => 'cil', 'CiPaw.02G116500' => 'cil', 'CiPaw.04G183000' => 'cil', 'CiPaw.04G183300' => 'cil', 'ClCG05G004610' => 'cla', 'ClCG05G004620' => 'cla', 'ClCG06G006730' => 'cla', 'ClCG06G006740' => 'cla', 'ClCG11G003690' => 'cla', 'COL.COLO4_08276' => 'col', 'COL.COLO4_08277' => 'col', 'COL.COLO4_15787' => 'col', 'COL.COLO4_15789' => 'col', 'Cpa.g.c44815' => 'cpa', 'Cpa.g.sc52.144' => 'cpa', 'Cpa.g.sc58.46' => 'cpa', 'Cpa.g.sc58.47' => 'cpa', 'Cre08.g360900' => 'cre', 'CsaV3_2G013030' => 'csa', 'CsaV3_2G013050' => 'csa', 'CsaV3_2G015620' => 'csa', 'CsaV3_3G012590' => 'csa', 'CsaV3_3G012600' => 'csa', 'CSS0001641' => 'camsi', 'CSS0008310' => 'camsi', 'CSS0013011' => 'camsi', 'CSS0017147' => 'camsi', 'CSS0022970' => 'camsi', 'CSS0025655' => 'camsi', 'CSS0028665' => 'camsi', 'CSS0029117' => 'camsi', 'CSS0032024' => 'camsi', 'CSS0039681' => 'camsi', 'CSS0046516' => 'camsi', 'CSS0050307' => 'camsi', 'DCAR_005871' => 'dca', 'DCAR_007342' => 'dca', 'DCAR_024228' => 'dca', 'DCAR_027277' => 'dca', 'DCAR_030718' => 'dca', 'Dinv20287' => 'din', 'Dinv22461' => 'din', 'Dinv22464' => 'din', 'Dinv29912' => 'din', 'Dinv29913' => 'din', 'Dinv34580' => 'din', 'Dinv34582' => 'din', 'Dinv44632' => 'din', 'Duzib052G0266' => 'dzi', 'Duzib133G0907' => 'dzi', 'Duzib133G1034' => 'dzi', 'Duzib138G0207' => 'dzi', 'Duzib138G0491' => 'dzi', 'Duzib151G0812' => 'dzi', 'Duzib151G1166' => 'dzi', 'Duzib168G0192' => 'dzi', 'Duzib211G0077' => 'dzi', 'Duzib212G0429' => 'dzi', 'Duzib212G0472' => 'dzi', 'ECA233G2617' => 'eca', 'ECA236G4188' => 'eca', 'ECA240G0936' => 'eca', 'ECA240G1129' => 'eca', 'ECA247G0623' => 'eca', 'EL10Ac5g10451' => 'bvu', 'EL10Ac5g10453' => 'bvu', 'EL10Ac5g10894' => 'bvu', 'Eucgr.H00192' => 'egr', 'Eucgr.H00193' => 'egr', 'Eucgr.H00194' => 'egr', 'Eucgr.J01562' => 'egr', 'Eucgr.K03301' => 'egr', 'FAN02G0632' => 'fan', 'FAN05G5378' => 'fan', 'FAN09G3247' => 'fan', 'FAN12G0435' => 'fan', 'FAN12G2426' => 'fan', 'FAN14G1707' => 'fan', 'FAN14G4725' => 'fan', 'FAN15G2071' => 'fan', 'FAN17G3065' => 'fan', 'FAN19G1376' => 'fan', 'FAN20G0354' => 'fan', 'FAN20G2429' => 'fan', 'FAN20G2658' => 'fan', 'FAN24G2343' => 'fan', 'FAN27G2362' => 'fan', 'FAN28G1765' => 'fan', 'FvH4_1g16020' => 'fve', 'FvH4_2g04890' => 'fve', 'FvH4_2g22270' => 'fve', 'FvH4_4g02630' => 'fve', 'FvH4_4g02640' => 'fve', 'FvH4_6g02650' => 'fve', 'Glyma.02G140600' => 'gma', 'Glyma.03G159900' => 'gma', 'Glyma.05G234800' => 'gma', 'Glyma.07G269600' => 'gma', 'Glyma.08G042300' => 'gma', 'Glyma.10G033500' => 'gma', 'Glyma.10G185200' => 'gma', 'Glyma.17G004300' => 'gma', 'Glyma.19G161900' => 'gma', 'Glyma.20G205100' => 'gma', 'Glyma.20G205200' => 'gma', 'Gohir.A01G139101' => 'ghi', 'Gohir.A02G035600' => 'ghi', 'Gohir.A02G117901' => 'ghi', 'Gohir.A07G210100' => 'ghi', 'Gohir.A07G210200' => 'ghi', 'Gohir.A08G061100' => 'ghi', 'Gohir.A09G223000' => 'ghi', 'Gohir.A09G223100' => 'ghi', 'Gohir.A10G113900' => 'ghi', 'Gohir.A10G114000' => 'ghi', 'Gohir.D02G042300' => 'ghi', 'Gohir.D07G216100' => 'ghi', 'Gohir.D07G216200' => 'ghi', 'Gohir.D08G070400' => 'ghi', 'Gohir.D09G225000' => 'ghi', 'Gohir.D09G225100' => 'ghi', 'Gohir.D10G152300' => 'ghi', 'Gohir.D10G153200' => 'ghi', 'Gohir.D11G133701' => 'ghi', 'Gorai.004G074100' => 'gra', 'Gorai.005G046800' => 'gra', 'Gorai.006G246500' => 'gra', 'Gorai.006G246600' => 'gra', 'Gorai.007G142900' => 'gra', 'Gorai.011G171000' => 'gra', 'Gorai.011G171100' => 'gra', 'Gorai.013G104300' => 'gra', 'Gorai.013G104400' => 'gra', 'GSVIVG01000754001' => 'vvi', 'GSVIVG01000756001' => 'vvi', 'GSVIVG01010903001' => 'vvi', 'GSVIVG01017623001' => 'vvi', 'GSVIVG01018113001' => 'vvi', 'GSVIVG01018116001' => 'vvi', 'GSVIVG01018118001' => 'vvi', 'HanXRQChr03g0076211' => 'han', 'HanXRQChr03g0092431' => 'han', 'HanXRQChr03g0092441' => 'han', 'HanXRQChr03g0092591' => 'han', 'HanXRQChr03g0092671' => 'han', 'HanXRQChr03g0092681' => 'han', 'HanXRQChr03g0092691' => 'han', 'HanXRQChr03g0092701' => 'han', 'HanXRQChr03g0092721' => 'han', 'HanXRQChr03g0092731' => 'han', 'HanXRQChr04g0113681' => 'han', 'HanXRQChr10g0281371' => 'han', 'HanXRQChr11g0337141' => 'han', 'HanXRQChr13g0424521' => 'han', 'HanXRQChr13g0424531' => 'han', 'HanXRQChr13g0424541' => 'han', 'HanXRQChr16g0498221' => 'han', 'Haze_04377' => 'cav', 'Haze_11298' => 'cav', 'Haze_24547' => 'cav', 'Haze_24550' => 'cav', 'Haze_26587' => 'cav', 'Hma1.2p1_0650F.1_g195410' => 'hma', 'Hma1.2p1_0893F.1_g233470' => 'hma', 'HPP92_006508' => 'vpl', 'HPP92_024780' => 'vpl', 'Hund02688' => 'sun', 'Hund09380' => 'sun', 'Hund09381' => 'sun', 'Hund09832' => 'sun', 'Hund09833' => 'sun', 'Hund11351' => 'sun', 'Hund11513' => 'sun', 'Lalb_Chr06g0162591' => 'lal', 'Lalb_Chr06g0162601' => 'lal', 'Lalb_Chr06g0169321' => 'lal', 'Lalb_Chr09g0330951' => 'lal', 'Lalb_Chr16g0387631' => 'lal', 'Lalb_Chr21g0306241' => 'lal', 'Lalb_Chr25g0290051' => 'lal', 'Lalb_Chr25g0290061' => 'lal', 'Lalb_Chr25g0290071' => 'lal', 'Lj1g0003876' => 'lja', 'Lj1P1207T36' => 'lonja', 'Lj2C1156G12' => 'lonja', 'Lj3A793G39' => 'lonja', 'Lj3C580G2' => 'lonja', 'Lj3C780G2' => 'lonja', 'Lj3C780T4' => 'lonja', 'Lj3C793G9' => 'lonja', 'Lj4g0012960' => 'lja', 'Lj5g0021252' => 'lja', 'Lj5g0021484' => 'lja', 'Lj5g0024528' => 'lja', 'Lj6A399T12' => 'lonja', 'Lj6A656G65' => 'lonja', 'Lsat_1_v5_gn_3_125500' => 'lsa', 'Lsat_1_v5_gn_3_125540' => 'lsa', 'Lsat_1_v5_gn_5_72701' => 'lsa', 'Lsat_1_v5_gn_8_91560' => 'lsa', 'Lsat_1_v5_gn_9_9640' => 'lsa', 'Manes.01G200600' => 'mes', 'Manes.01G200700' => 'mes', 'Manes.03G168900' => 'mes', 'Manes.03G169000' => 'mes', 'Manes.05G085801' => 'mes', 'Manes.05G086200' => 'mes', 'Manes.15G036700' => 'mes', 'Manes.15G036900' => 'mes', 'Mapoly0004s0172' => 'mpo', 'Mapoly0023s0001' => 'mpo', 'Mapoly0142s0012' => 'mpo', 'MBI01_g32854_MAGBIO' => 'mbi', 'MBI11_g24427_MAGBIO' => 'mbi', 'MBI11_g47319_MAGBIO' => 'mbi', 'MCO01G433' => 'mco', 'MD00G1187800' => 'mdo', 'MD04G1226500' => 'mdo', 'MD05G1203900' => 'mdo', 'MD10G1191100' => 'mdo', 'MD12G1243500' => 'mdo', 'MD13G1207000' => 'mdo', 'MD13G1207100' => 'mdo', 'MD16G1208600' => 'mdo', 'Medtr1g050352' => 'mtr', 'Medtr1g070385' => 'mtr', 'Medtr1g070450' => 'mtr', 'Medtr1g075200' => 'mtr', 'Medtr1g075250' => 'mtr', 'Medtr1g075260' => 'mtr', 'Medtr1g475250' => 'mtr', 'Medtr4g075450' => 'mtr', 'Medtr7g096300' => 'mtr', 'Medtr8g105110' => 'mtr', 'MELO3C006470.2' => 'cme', 'MELO3C006471.2' => 'cme', 'MELO3C020772.2' => 'cme', 'MELO3C026780.2' => 'cme', 'MELO3C026781.2' => 'cme', 'Migut.D00390' => 'egut', 'Migut.G00435' => 'egut', 'Migut.G00436' => 'egut', 'Migut.G00718' => 'egut', 'MSTRG.21891' => 'ama', 'MSTRG.26910' => 'ama', 'MSTRG.4099' => 'ama', 'MSTRG.9925' => 'ama', 'Nitab4.5_0000165g0010' => 'nta', 'Nitab4.5_0000209g0180' => 'nta', 'Nitab4.5_0000244g0440' => 'nta', 'Nitab4.5_0000525g0220' => 'nta', 'Nitab4.5_0001597g0020' => 'nta', 'Nitab4.5_0001878g0040' => 'nta', 'Nitab4.5_0001878g0060' => 'nta', 'Nitab4.5_0002838g0100' => 'nta', 'Nitab4.5_0002838g0120' => 'nta', 'Nitab4.5_0004798g0030' => 'nta', 'Nitab4.5_0005420g0010' => 'nta', 'Nitab4.5_0005507g0010' => 'nta', 'Nitab4.5_0005574g0020' => 'nta', 'Nitab4.5_0005838g0010' => 'nta', 'Nitab4.5_0010580g0020' => 'nta', 'Nn1g02599' => 'nnu', 'Nn1g02608' => 'nnu', 'Nn3g17742' => 'nnu', 'Nn3g19534' => 'nnu', 'Nn3g19535' => 'nnu', 'Oeu008790.1' => 'oeu', 'Oeu008792.1' => 'oeu', 'Oeu032590.1' => 'oeu', 'Oeu035349.1' => 'oeu', 'Oeu049791.1' => 'oeu', 'Os01g0774500' => 'osa', 'Os03g0628800' => 'osa', 'Os03g0798600' => 'osa', 'Os05g0508800' => 'osa', 'Peaxi162Scf00036g02018' => 'pax', 'Peaxi162Scf00578g00032' => 'pax', 'Peaxi162Scf00578g00317' => 'pax', 'Peaxi162Scf00785g00114' => 'pax', 'Peaxi162Scf00813g00119' => 'pax', 'Peaxi162Scf00906g00227' => 'pax', 'PGR004G0875' => 'pgr', 'PGR004G2424' => 'pgr', 'PGR031G1239' => 'pgr', 'PGR031G2474' => 'pgr', 'PGR044G0423' => 'pgr', 'PGSC0003DMG400001128' => 'stu', 'PGSC0003DMG400007336' => 'stu', 'PGSC0003DMG400016318' => 'stu', 'PGSC0003DMG400016319' => 'stu', 'PGSC0003DMG400018074' => 'stu', 'Phvul.001G157700' => 'pvu', 'Phvul.002G148550' => 'pvu', 'Phvul.002G320200' => 'pvu', 'Phvul.003G089200' => 'pvu', 'Phvul.007G126000' => 'pvu', 'Phvul.007G126100' => 'pvu', 'Phvul.007G178000' => 'pvu', 'Phvul.007G178200' => 'pvu', 'Potri.002G043000' => 'ptr', 'Potri.002G043200' => 'ptr', 'Potri.003G123750' => 'ptr', 'Potri.005G055401' => 'ptr', 'Potri.005G219700' => 'ptr', 'Potri.005G220000' => 'ptr', 'Potri.008G161901' => 'ptr', 'Potri.008G162000' => 'ptr', 'Potri.008G162400' => 'ptr', 'Potri.010G076900' => 'ptr', 'Pp3c12_9180' => 'ppa', 'Pp3c13_19770' => 'ppa', 'Pp3c14_22950' => 'ppa', 'Pp3c16_12160' => 'ppa', 'Pp3c27_7820' => 'ppa', 'Pp3c2_3490' => 'ppa', 'Pp3c3_23700' => 'ppa', 'Pp3c3_36520' => 'ppa', 'Pp3c4_15250' => 'ppa', 'PRCOL_00007002' => 'pco', 'Prupe.1G030600' => 'ppe', 'Prupe.1G030700' => 'ppe', 'Prupe.6G345200' => 'ppe', 'Prupe.8G230300' => 'ppe', 'Prupe.8G230500' => 'ppe', 'Psat3g059600' => 'psa', 'Psat5g200920' => 'psa', 'Psat6g056440' => 'psa', 'Psat6g057360' => 'psa', 'Psat6g134120' => 'psa', 'Psat6g134160' => 'psa', 'Psat7g008640' => 'psa', 'Psat7g185240' => 'psa', 'PSO017G1330' => 'pso', 'PSO063G6097' => 'pso', 'PSO170G0835' => 'pso', 'PSO170G2499' => 'pso', 'PSO210G5058' => 'pso', 'PSO210G6154' => 'pso', 'PSO585G0031' => 'pso', 'PSO832G0264' => 'pso', 'PSO832G4288' => 'pso', 'QL03p027355' => 'qlo', 'QL03p027430' => 'qlo', 'QL04p081380' => 'qlo', 'QL06p015642' => 'qlo', 'QL06p015650' => 'qlo', 'QL06p015686' => 'qlo', 'QL12p042927' => 'qlo', 'QL93p1863_0035' => 'qlo', 'RcHm_v2.0_Chr3g0450581' => 'rch', 'RcHm_v2.0_Chr4g0390371' => 'rch', 'RcHm_v2.0_Chr4g0390381' => 'rch', 'RcHm_v2.0_Chr4g0390491' => 'rch', 'RcHm_v2.0_Chr4g0390501' => 'rch', 'RcHm_v2.0_Chr6g0289231' => 'rch', 'Rhsim04G0190400' => 'rsi', 'Rhsim04G0190500' => 'rsi', 'Rhsim04G0190600' => 'rsi', 'Rhsim13G0031400' => 'rsi', 'Rhsim13G0165600' => 'rsi', 'RhsimUnG0114600' => 'rsi', 'RhsimUnG0114700' => 'rsi', 'Sabra02G0034800' => 'sbr', 'Sabra02G0035100' => 'sbr', 'Sabra05G0168600' => 'sbr', 'Sabra05G0168800' => 'sbr', 'Sabra08G0123700' => 'sbr', 'Sabra10G0031900' => 'sbr', 'Sabra13G0039000' => 'sbr', 'SalBow2G0782' => 'sbo', 'SalBow2G1403' => 'sbo', 'SalBow4G0074' => 'sbo', 'SalBow4G2635' => 'sbo', 'SalBow5G3010' => 'sbo', 'Sc05g0000870' => 'sci', 'Sc05g0000890' => 'sci', 'Sc13g0005000' => 'sci', 'Sc13g0005030' => 'sci', 'Sc19g0003790' => 'sci', 'Sc19g0003800' => 'sci', 'Sed0003467' => 'sed', 'Sed0009355' => 'sed', 'Sed0009894' => 'sed', 'Sed0011972' => 'sed', 'Sed0021483' => 'sed', 'Sed0021750' => 'sed', 'Sed0026279' => 'sed', 'SEGI_05312' => 'sgi', 'SEGI_10112' => 'sgi', 'SEGI_15835' => 'sgi', 'SEGI_30386' => 'sgi', 'SEGI_34122' => 'sgi', 'SEGI_35063' => 'sgi', 'SGA_v2.0_scaffold101G29794' => 'sas', 'SGA_v2.0_scaffold1G00573' => 'sas', 'SGA_v2.0_scaffold79G25637' => 'sas', 'SGA_v2.0_scaffold88G27283' => 'sas', 'SGA_v2.0_scaffold88G27285' => 'sas', 'SGA_v2.0_scaffold88G27331' => 'sas', 'SHI09937' => 'shi', 'SMO119G0302' => 'smo', 'SMO137G0231' => 'smo', 'SMO367G1151' => 'smo', 'Solyc02g082000.3' => 'sly', 'Solyc06g031670.3' => 'sly', 'Solyc06g053810.3' => 'sly', 'Solyc07g025457.1' => 'sly', 'Solyc08g059740.1' => 'sly', 'Solyc08g059750.3' => 'sly', 'Solyc09g083370.3' => 'sly', 'Solyc12g038950.3' => 'sly', 'Sopen02g026630' => 'spe', 'Sopen06g018930' => 'spe', 'Sopen06g018940' => 'spe', 'Sopen08g009460' => 'spe', 'Sopen09g032290' => 'spe', 'Sp1g03080' => 'spa', 'Sp1g03090' => 'spa', 'Sp1g05480' => 'spa', 'Sp2g07860' => 'spa', 'Sp2g08430' => 'spa', 'Sp2g08440' => 'spa', 'Sp2g26200' => 'spa', 'Sp4g13170' => 'spa', 'Sp6g33840' => 'spa', 'SpUn1204_0010' => 'spa', 'TAR365G0908' => 'tar', 'TAR381G1270' => 'tar', 'TAR381G1651' => 'tar', 'TAR625G1131' => 'tar', 'TAR633G0962' => 'tar', 'TAR633G1729' => 'tar', 'TAR633G1864' => 'tar', 'TAR636G0221' => 'tar', 'TAR636G0314' => 'tar', 'TAR636G3202' => 'tar', 'THA.LOC104800805' => 'tha', 'THA.LOC104801096' => 'tha', 'THA.LOC104801555' => 'tha', 'THA.LOC104808491' => 'tha', 'THA.LOC104808595' => 'tha', 'THA.LOC104815985' => 'tha', 'THA.LOC104822250' => 'tha', 'THA.LOC104826071' => 'tha', 'Thecc.01G265200' => 'tca', 'Thecc.01G265300' => 'tca', 'Thecc.01G265700' => 'tca', 'Thecc.03G109100' => 'tca', 'Thecc.04G245900' => 'tca', 'Thecc.04G246000' => 'tca', 'Thhalv10003334m.g' => 'esa', 'Thhalv10005508m.g' => 'esa', 'Thhalv10005643m.g' => 'esa', 'Thhalv10007316m.g' => 'esa', 'Thhalv10009006m.g' => 'esa', 'Thhalv10009309m.g' => 'esa', 'Thhalv10014917m.g' => 'esa', 'Thhalv10014919m.g' => 'esa', 'Thhalv10015393m.g' => 'esa', 'Thhalv10016515m.g' => 'esa', 'Thhalv10029242m.g' => 'esa', 'TPR.G16654' => 'tpr', 'TPR.G20589' => 'tpr', 'TPR.G23029' => 'tpr', 'TPR.G27731' => 'tpr', 'TPR.G28889' => 'tpr', 'TPR.G28899' => 'tpr', 'TPR.G30846' => 'tpr', 'TPR.G5452' => 'tpr', 'TPR.G5713' => 'tpr', 'TPR.G9046' => 'tpr', 'TPR.G9061' => 'tpr', 'TWI09G1075' => 'twi', 'TWI12G0806' => 'twi', 'TWI18G0108' => 'twi', 'TWI53G1361' => 'twi', 'TWI73G0185' => 'twi', 'TWI73G0427' => 'twi', 'unitig_37.g12001' => 'ugi', 'unitig_747.g21660' => 'ugi', 'unitig_748.g7232' => 'ugi', 'unitig_748.g7315' => 'ugi', 'unitig_85.g27262' => 'ugi', 'unitig_92.g28220' => 'ugi', 'vmacro02632' => 'vma', 'vmacro08410' => 'vma', 'vmacro08411' => 'vma', 'vmacro15407' => 'vma', 'VMungo0251G3619' => 'vmu', 'VMungo0720G1204' => 'vmu', 'VMungo0720G1918' => 'vmu', 'VMungo0720G2387' => 'vmu', 'VMungo0720G2961' => 'vmu', 'VMungo1215G2154' => 'vmu', 'VMungo1383G2411' => 'vmu', 'Zm00001eb051130' => 'zma', 'Zm00001eb116830' => 'zma', 'Zm00001eb116850' => 'zma', 'Zm00001eb151740' => 'zma', 'Zm00001eb292360' => 'zma', 'Zm00001eb301640' => 'zma' ) $gf_id = 'HOM05D000856' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000856' ) $data_identifier = 'HOM05D000856' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 13, 'ath' => (int) 10, 'atr' => (int) 1, 'acertr' => (int) 8, 'cqu' => (int) 6, 'bca' => (int) 21, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 11, 'car' => (int) 9, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 8, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 5, 'fan' => (int) 16, 'fve' => (int) 6, 'gma' => (int) 11, 'ghi' => (int) 19, 'gra' => (int) 9, 'vvi' => (int) 7, 'han' => (int) 17, 'cav' => (int) 5, 'hma' => (int) 2, 'vpl' => (int) 2, 'sun' => (int) 7, 'lal' => (int) 9, 'lja' => (int) 5, 'lonja' => (int) 9, 'lsa' => (int) 5, 'mes' => (int) 8, 'mpo' => (int) 3, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 10, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 15, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 9, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 9, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 6, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 5, 'spa' => (int) 10, 'tar' => (int) 10, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 11, 'tpr' => (int) 11, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 4, 'vmu' => (int) 7, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb301640' $species_info = array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ) $local_species = 'tca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000856', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p00010' => 'bna', 'A03p04160' => 'bna', 'A03p17160' => 'bna', 'A04p23370' => 'bna', 'A05p14860' => 'bna', 'A08p37020' => 'bna', 'A09p08050' => 'bna', 'A09p66800' => 'bna', 'A09p67940' => 'bna', 'A10p02680' => 'bna', 'A10p05320' => 'bna', 'Aa31LG1G20560' => 'aar', 'Aa31LG1G20610' => 'aar', 'Aa31LG1G7810' => 'aar', 'Aa31LG5G3590' => 'aar', 'Aa31LG5G6140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3819' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4683' => 'aag', 'Actinidia04480' => 'ach', 'Actinidia05466' => 'ach', 'Actinidia08445' => 'ach', 'Actinidia21170' => 'ach', 'Actinidia24812' => 'ach', 'Actinidia24951' => 'ach', 'Actinidia40088' => 'ach', 'Ah.02g111660' => 'amhyb', 'Ah.11g048900' => 'amhyb', 'Ah.11g049910' => 'amhyb', 'AL1G13870' => 'aly', 'AL1G13880' => 'aly', 'AL1G16760' => 'aly', 'AL390U10020' => 'aly', 'AL4G25520' => 'aly', 'AL6G19890' => 'aly', 'AL6G19900' => 'aly', 'AL6G19910' => 'aly', 'AL8G40100' => 'aly', 'Aqoxy2G03562' => 'aox', 'Aqoxy5G00316' => 'aox', 'Aqoxy5G00926' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1628KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1H403S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2FU6SJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.882I6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8YRY2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YN1SN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AF70II' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZA8L1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F916KL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHRD8H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KTZ8QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S22EMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8M29T' => 'arhy', 'AT1G04270' => 'ath', 'AT1G04280' => 'ath', 'AT1G06750' => 'ath', 'AT1G33850' => 'ath', 'AT2G30630' => 'ath', 'AT5G09490' => 'ath', 'AT5G09500' => 'ath', 'AT5G09510' => 'ath', 'AT5G43640' => 'ath', 'AT5G63070' => 'ath', 'ATR0605G315' => 'atr', 'Atru.chr11.175' => 'acertr', 'Atru.chr11.653' => 'acertr', 'Atru.chr3.1616' => 'acertr', 'Atru.chr4.2230' => 'acertr', 'Atru.chr4.2232' => 'acertr', 'Atru.chr5.1598' => 'acertr', 'Atru.chr5.1600' => 'acertr', 'Atru.chr5.2188' => 'acertr', 'AUR62008326' => 'cqu', 'AUR62011922' => 'cqu', 'AUR62011924' => 'cqu', 'AUR62021771' => 'cqu', 'AUR62032237' => 'cqu', 'AUR62032240' => 'cqu', 'BcaB01g05572' => 'bca', 'BcaB02g10337' => 'bca', 'BcaB04g19944' => 'bca', 'BcaB05g21548' => 'bca', 'BcaB05g21549' => 'bca', 'BcaB05g23227' => 'bca', 'BcaB06g26256' => 'bca', 'BcaB06g26257' => 'bca', 'BcaB06g28379' => 'bca', 'BcaC02g11159' => 'bca', 'BcaC03g13258' => 'bca', 'BcaC03g13259' => 'bca', 'BcaC05g24456' => 'bca', 'BcaC05g24457' => 'bca', 'BcaC07g36922' => 'bca', 'BcaC07g36923' => 'bca', 'BcaC07g42050' => 'bca', 'BcaC07g42176' => 'bca', 'BcaC07g42195' => 'bca', 'BcaC07g42196' => 'bca', 'BcaNung06674' => 'bca', 'BolC2t06351H' => 'bol', 'BolC2t06352H' => 'bol', 'BolC3t12993H' => 'bol', 'BolC4t23525H' => 'bol', 'BolC4t27475H' => 'bol', 'BolC5t29025H' => 'bol', 'BolC5t29026H' => 'bol', 'BolC8t46898H' => 'bol', 'BolC8t46899H' => 'bol', 'BolC8t52630H' => 'bol', 'BolC8t52765H' => 'bol', 'BolC9t53824H' => 'bol', 'BraA03t09760Z' => 'bra', 'BraA03t10990Z' => 'bra', 'BraA05t20413Z' => 'bra', 'BraA08t35602Z' => 'bra', 'BraA09t36458Z' => 'bra', 'BraA09t42018Z' => 'bra', 'BraA09t42129Z' => 'bra', 'BraA10t42536Z' => 'bra', 'BraA10t42537Z' => 'bra', 'C01p10690' => 'bna', 'C02p03890' => 'bna', 'C02p03900' => 'bna', 'C03p04620' => 'bna', 'C04p19870' => 'bna', 'C04p59670' => 'bna', 'C05p02460' => 'bna', 'C05p02470' => 'bna', 'C08p00980' => 'bna', 'C08p00990' => 'bna', 'C08p51030' => 'bna', 'C08p52360' => 'bna', 'C09p09120' => 'bna', 'CAN.G19.15' => 'can', 'CAN.G251.10' => 'can', 'CAN.G251.9' => 'can', 'CAN.G398.24' => 'can', 'CAN.G410.32' => 'can', 'CAN.G881.2' => 'can', 'CANSAT01G3025' => 'cansat', 'CANSAT78G1211' => 'cansat', 'CANSAT78G1218' => 'cansat', 'CANSAT78G1521' => 'cansat', 'CANSAT78G1670' => 'cansat', 'CARHR003600' => 'chi', 'CARHR003610' => 'chi', 'CARHR006290' => 'chi', 'CARHR006430' => 'chi', 'CARHR124110' => 'chi', 'CARHR203870' => 'chi', 'CARHR203880' => 'chi', 'CARHR203890' => 'chi', 'CARHR276880' => 'chi', 'Carub.0001s0346' => 'cru', 'Carub.0001s0347' => 'cru', 'Carub.0001s0607' => 'cru', 'Carub.0003s2768' => 'cru', 'Carub.0003s2769' => 'cru', 'Carub.0004s1178' => 'cru', 'Carub.0006s0806' => 'cru', 'Carub.0006s0807' => 'cru', 'Carub.0006s0808' => 'cru', 'Carub.0008s0501' => 'cru', 'Carub.0008s2379' => 'cru', 'Ca_08655_v3' => 'car', 'Ca_08922_v3' => 'car', 'Ca_08923_v3' => 'car', 'Ca_09119_v3' => 'car', 'Ca_09703_v3' => 'car', 'Ca_09705_v3' => 'car', 'Ca_09835_v3' => 'car', 'Ca_26403_v3' => 'car', 'Ca_30719_v3' => 'car', 'CBR_g17958' => 'cbr', 'CBR_g40516' => 'cbr', 'Cc00_g05350' => 'ccan', 'Cc01_g18690' => 'ccan', 'Cc03_g04830' => 'ccan', 'Cc03_g04850' => 'ccan', 'CDE02G4469' => 'cde', 'CDE06G0883' => 'cde', 'CDE06G1295' => 'cde', 'CDE06G1390' => 'cde', 'CDE07G0584' => 'cde', 'CDE07G1084' => 'cde', 'CDE08G1259' => 'cde', 'Cfa002341' => 'cfa', 'Cfa024337' => 'cfa', 'Ciclev10004749m.g' => 'ccl', 'Ciclev10006127m.g' => 'ccl', 'Ciclev10019720m.g' => 'ccl', 'Ciclev10022652m.g' => 'ccl', 'CiPaw.01G190400' => 'cil', 'CiPaw.01G190500' => 'cil', 'CiPaw.02G116400' => 'cil', 'CiPaw.02G116500' => 'cil', 'CiPaw.04G183000' => 'cil', 'CiPaw.04G183300' => 'cil', 'ClCG05G004610' => 'cla', 'ClCG05G004620' => 'cla', 'ClCG06G006730' => 'cla', 'ClCG06G006740' => 'cla', 'ClCG11G003690' => 'cla', 'COL.COLO4_08276' => 'col', 'COL.COLO4_08277' => 'col', 'COL.COLO4_15787' => 'col', 'COL.COLO4_15789' => 'col', 'Cpa.g.c44815' => 'cpa', 'Cpa.g.sc52.144' => 'cpa', 'Cpa.g.sc58.46' => 'cpa', 'Cpa.g.sc58.47' => 'cpa', 'Cre08.g360900' => 'cre', 'CsaV3_2G013030' => 'csa', 'CsaV3_2G013050' => 'csa', 'CsaV3_2G015620' => 'csa', 'CsaV3_3G012590' => 'csa', 'CsaV3_3G012600' => 'csa', 'CSS0001641' => 'camsi', 'CSS0008310' => 'camsi', 'CSS0013011' => 'camsi', 'CSS0017147' => 'camsi', 'CSS0022970' => 'camsi', 'CSS0025655' => 'camsi', 'CSS0028665' => 'camsi', 'CSS0029117' => 'camsi', 'CSS0032024' => 'camsi', 'CSS0039681' => 'camsi', 'CSS0046516' => 'camsi', 'CSS0050307' => 'camsi', 'DCAR_005871' => 'dca', 'DCAR_007342' => 'dca', 'DCAR_024228' => 'dca', 'DCAR_027277' => 'dca', 'DCAR_030718' => 'dca', 'Dinv20287' => 'din', 'Dinv22461' => 'din', 'Dinv22464' => 'din', 'Dinv29912' => 'din', 'Dinv29913' => 'din', 'Dinv34580' => 'din', 'Dinv34582' => 'din', 'Dinv44632' => 'din', 'Duzib052G0266' => 'dzi', 'Duzib133G0907' => 'dzi', 'Duzib133G1034' => 'dzi', 'Duzib138G0207' => 'dzi', 'Duzib138G0491' => 'dzi', 'Duzib151G0812' => 'dzi', 'Duzib151G1166' => 'dzi', 'Duzib168G0192' => 'dzi', 'Duzib211G0077' => 'dzi', 'Duzib212G0429' => 'dzi', 'Duzib212G0472' => 'dzi', 'ECA233G2617' => 'eca', 'ECA236G4188' => 'eca', 'ECA240G0936' => 'eca', 'ECA240G1129' => 'eca', 'ECA247G0623' => 'eca', 'EL10Ac5g10451' => 'bvu', 'EL10Ac5g10453' => 'bvu', 'EL10Ac5g10894' => 'bvu', 'Eucgr.H00192' => 'egr', 'Eucgr.H00193' => 'egr', 'Eucgr.H00194' => 'egr', 'Eucgr.J01562' => 'egr', 'Eucgr.K03301' => 'egr', 'FAN02G0632' => 'fan', 'FAN05G5378' => 'fan', 'FAN09G3247' => 'fan', 'FAN12G0435' => 'fan', 'FAN12G2426' => 'fan', 'FAN14G1707' => 'fan', 'FAN14G4725' => 'fan', 'FAN15G2071' => 'fan', 'FAN17G3065' => 'fan', 'FAN19G1376' => 'fan', 'FAN20G0354' => 'fan', 'FAN20G2429' => 'fan', 'FAN20G2658' => 'fan', 'FAN24G2343' => 'fan', 'FAN27G2362' => 'fan', 'FAN28G1765' => 'fan', 'FvH4_1g16020' => 'fve', 'FvH4_2g04890' => 'fve', 'FvH4_2g22270' => 'fve', 'FvH4_4g02630' => 'fve', 'FvH4_4g02640' => 'fve', 'FvH4_6g02650' => 'fve', 'Glyma.02G140600' => 'gma', 'Glyma.03G159900' => 'gma', 'Glyma.05G234800' => 'gma', 'Glyma.07G269600' => 'gma', 'Glyma.08G042300' => 'gma', 'Glyma.10G033500' => 'gma', 'Glyma.10G185200' => 'gma', 'Glyma.17G004300' => 'gma', 'Glyma.19G161900' => 'gma', 'Glyma.20G205100' => 'gma', 'Glyma.20G205200' => 'gma', 'Gohir.A01G139101' => 'ghi', 'Gohir.A02G035600' => 'ghi', 'Gohir.A02G117901' => 'ghi', 'Gohir.A07G210100' => 'ghi', 'Gohir.A07G210200' => 'ghi', 'Gohir.A08G061100' => 'ghi', 'Gohir.A09G223000' => 'ghi', 'Gohir.A09G223100' => 'ghi', 'Gohir.A10G113900' => 'ghi', 'Gohir.A10G114000' => 'ghi', 'Gohir.D02G042300' => 'ghi', 'Gohir.D07G216100' => 'ghi', 'Gohir.D07G216200' => 'ghi', 'Gohir.D08G070400' => 'ghi', 'Gohir.D09G225000' => 'ghi', 'Gohir.D09G225100' => 'ghi', 'Gohir.D10G152300' => 'ghi', 'Gohir.D10G153200' => 'ghi', 'Gohir.D11G133701' => 'ghi', 'Gorai.004G074100' => 'gra', 'Gorai.005G046800' => 'gra', 'Gorai.006G246500' => 'gra', 'Gorai.006G246600' => 'gra', 'Gorai.007G142900' => 'gra', 'Gorai.011G171000' => 'gra', 'Gorai.011G171100' => 'gra', 'Gorai.013G104300' => 'gra', 'Gorai.013G104400' => 'gra', 'GSVIVG01000754001' => 'vvi', 'GSVIVG01000756001' => 'vvi', 'GSVIVG01010903001' => 'vvi', 'GSVIVG01017623001' => 'vvi', 'GSVIVG01018113001' => 'vvi', 'GSVIVG01018116001' => 'vvi', 'GSVIVG01018118001' => 'vvi', 'HanXRQChr03g0076211' => 'han', 'HanXRQChr03g0092431' => 'han', 'HanXRQChr03g0092441' => 'han', 'HanXRQChr03g0092591' => 'han', 'HanXRQChr03g0092671' => 'han', 'HanXRQChr03g0092681' => 'han', 'HanXRQChr03g0092691' => 'han', 'HanXRQChr03g0092701' => 'han', 'HanXRQChr03g0092721' => 'han', 'HanXRQChr03g0092731' => 'han', 'HanXRQChr04g0113681' => 'han', 'HanXRQChr10g0281371' => 'han', 'HanXRQChr11g0337141' => 'han', 'HanXRQChr13g0424521' => 'han', 'HanXRQChr13g0424531' => 'han', 'HanXRQChr13g0424541' => 'han', 'HanXRQChr16g0498221' => 'han', 'Haze_04377' => 'cav', 'Haze_11298' => 'cav', 'Haze_24547' => 'cav', 'Haze_24550' => 'cav', 'Haze_26587' => 'cav', 'Hma1.2p1_0650F.1_g195410' => 'hma', 'Hma1.2p1_0893F.1_g233470' => 'hma', 'HPP92_006508' => 'vpl', 'HPP92_024780' => 'vpl', 'Hund02688' => 'sun', 'Hund09380' => 'sun', 'Hund09381' => 'sun', 'Hund09832' => 'sun', 'Hund09833' => 'sun', 'Hund11351' => 'sun', 'Hund11513' => 'sun', 'Lalb_Chr06g0162591' => 'lal', 'Lalb_Chr06g0162601' => 'lal', 'Lalb_Chr06g0169321' => 'lal', 'Lalb_Chr09g0330951' => 'lal', 'Lalb_Chr16g0387631' => 'lal', 'Lalb_Chr21g0306241' => 'lal', 'Lalb_Chr25g0290051' => 'lal', 'Lalb_Chr25g0290061' => 'lal', 'Lalb_Chr25g0290071' => 'lal', 'Lj1g0003876' => 'lja', 'Lj1P1207T36' => 'lonja', 'Lj2C1156G12' => 'lonja', 'Lj3A793G39' => 'lonja', 'Lj3C580G2' => 'lonja', 'Lj3C780G2' => 'lonja', 'Lj3C780T4' => 'lonja', 'Lj3C793G9' => 'lonja', 'Lj4g0012960' => 'lja', 'Lj5g0021252' => 'lja', 'Lj5g0021484' => 'lja', 'Lj5g0024528' => 'lja', 'Lj6A399T12' => 'lonja', 'Lj6A656G65' => 'lonja', 'Lsat_1_v5_gn_3_125500' => 'lsa', 'Lsat_1_v5_gn_3_125540' => 'lsa', 'Lsat_1_v5_gn_5_72701' => 'lsa', 'Lsat_1_v5_gn_8_91560' => 'lsa', 'Lsat_1_v5_gn_9_9640' => 'lsa', 'Manes.01G200600' => 'mes', 'Manes.01G200700' => 'mes', 'Manes.03G168900' => 'mes', 'Manes.03G169000' => 'mes', 'Manes.05G085801' => 'mes', 'Manes.05G086200' => 'mes', 'Manes.15G036700' => 'mes', 'Manes.15G036900' => 'mes', 'Mapoly0004s0172' => 'mpo', 'Mapoly0023s0001' => 'mpo', 'Mapoly0142s0012' => 'mpo', 'MBI01_g32854_MAGBIO' => 'mbi', 'MBI11_g24427_MAGBIO' => 'mbi', 'MBI11_g47319_MAGBIO' => 'mbi', 'MCO01G433' => 'mco', 'MD00G1187800' => 'mdo', 'MD04G1226500' => 'mdo', 'MD05G1203900' => 'mdo', 'MD10G1191100' => 'mdo', 'MD12G1243500' => 'mdo', 'MD13G1207000' => 'mdo', 'MD13G1207100' => 'mdo', 'MD16G1208600' => 'mdo', 'Medtr1g050352' => 'mtr', 'Medtr1g070385' => 'mtr', 'Medtr1g070450' => 'mtr', 'Medtr1g075200' => 'mtr', 'Medtr1g075250' => 'mtr', 'Medtr1g075260' => 'mtr', 'Medtr1g475250' => 'mtr', 'Medtr4g075450' => 'mtr', 'Medtr7g096300' => 'mtr', 'Medtr8g105110' => 'mtr', 'MELO3C006470.2' => 'cme', 'MELO3C006471.2' => 'cme', 'MELO3C020772.2' => 'cme', 'MELO3C026780.2' => 'cme', 'MELO3C026781.2' => 'cme', 'Migut.D00390' => 'egut', 'Migut.G00435' => 'egut', 'Migut.G00436' => 'egut', 'Migut.G00718' => 'egut', 'MSTRG.21891' => 'ama', 'MSTRG.26910' => 'ama', 'MSTRG.4099' => 'ama', 'MSTRG.9925' => 'ama', 'Nitab4.5_0000165g0010' => 'nta', 'Nitab4.5_0000209g0180' => 'nta', 'Nitab4.5_0000244g0440' => 'nta', 'Nitab4.5_0000525g0220' => 'nta', 'Nitab4.5_0001597g0020' => 'nta', 'Nitab4.5_0001878g0040' => 'nta', 'Nitab4.5_0001878g0060' => 'nta', 'Nitab4.5_0002838g0100' => 'nta', 'Nitab4.5_0002838g0120' => 'nta', 'Nitab4.5_0004798g0030' => 'nta', 'Nitab4.5_0005420g0010' => 'nta', 'Nitab4.5_0005507g0010' => 'nta', 'Nitab4.5_0005574g0020' => 'nta', 'Nitab4.5_0005838g0010' => 'nta', 'Nitab4.5_0010580g0020' => 'nta', 'Nn1g02599' => 'nnu', 'Nn1g02608' => 'nnu', 'Nn3g17742' => 'nnu', 'Nn3g19534' => 'nnu', 'Nn3g19535' => 'nnu', 'Oeu008790.1' => 'oeu', 'Oeu008792.1' => 'oeu', 'Oeu032590.1' => 'oeu', 'Oeu035349.1' => 'oeu', 'Oeu049791.1' => 'oeu', 'Os01g0774500' => 'osa', 'Os03g0628800' => 'osa', 'Os03g0798600' => 'osa', 'Os05g0508800' => 'osa', 'Peaxi162Scf00036g02018' => 'pax', 'Peaxi162Scf00578g00032' => 'pax', 'Peaxi162Scf00578g00317' => 'pax', 'Peaxi162Scf00785g00114' => 'pax', 'Peaxi162Scf00813g00119' => 'pax', 'Peaxi162Scf00906g00227' => 'pax', 'PGR004G0875' => 'pgr', 'PGR004G2424' => 'pgr', 'PGR031G1239' => 'pgr', 'PGR031G2474' => 'pgr', 'PGR044G0423' => 'pgr', 'PGSC0003DMG400001128' => 'stu', 'PGSC0003DMG400007336' => 'stu', 'PGSC0003DMG400016318' => 'stu', 'PGSC0003DMG400016319' => 'stu', 'PGSC0003DMG400018074' => 'stu', 'Phvul.001G157700' => 'pvu', 'Phvul.002G148550' => 'pvu', 'Phvul.002G320200' => 'pvu', 'Phvul.003G089200' => 'pvu', 'Phvul.007G126000' => 'pvu', 'Phvul.007G126100' => 'pvu', 'Phvul.007G178000' => 'pvu', 'Phvul.007G178200' => 'pvu', 'Potri.002G043000' => 'ptr', 'Potri.002G043200' => 'ptr', 'Potri.003G123750' => 'ptr', 'Potri.005G055401' => 'ptr', 'Potri.005G219700' => 'ptr', 'Potri.005G220000' => 'ptr', 'Potri.008G161901' => 'ptr', 'Potri.008G162000' => 'ptr', 'Potri.008G162400' => 'ptr', 'Potri.010G076900' => 'ptr', 'Pp3c12_9180' => 'ppa', 'Pp3c13_19770' => 'ppa', 'Pp3c14_22950' => 'ppa', 'Pp3c16_12160' => 'ppa', 'Pp3c27_7820' => 'ppa', 'Pp3c2_3490' => 'ppa', 'Pp3c3_23700' => 'ppa', 'Pp3c3_36520' => 'ppa', 'Pp3c4_15250' => 'ppa', 'PRCOL_00007002' => 'pco', 'Prupe.1G030600' => 'ppe', 'Prupe.1G030700' => 'ppe', 'Prupe.6G345200' => 'ppe', 'Prupe.8G230300' => 'ppe', 'Prupe.8G230500' => 'ppe', 'Psat3g059600' => 'psa', 'Psat5g200920' => 'psa', 'Psat6g056440' => 'psa', 'Psat6g057360' => 'psa', 'Psat6g134120' => 'psa', 'Psat6g134160' => 'psa', 'Psat7g008640' => 'psa', 'Psat7g185240' => 'psa', 'PSO017G1330' => 'pso', 'PSO063G6097' => 'pso', 'PSO170G0835' => 'pso', 'PSO170G2499' => 'pso', 'PSO210G5058' => 'pso', 'PSO210G6154' => 'pso', 'PSO585G0031' => 'pso', 'PSO832G0264' => 'pso', 'PSO832G4288' => 'pso', 'QL03p027355' => 'qlo', 'QL03p027430' => 'qlo', 'QL04p081380' => 'qlo', 'QL06p015642' => 'qlo', 'QL06p015650' => 'qlo', 'QL06p015686' => 'qlo', 'QL12p042927' => 'qlo', 'QL93p1863_0035' => 'qlo', 'RcHm_v2.0_Chr3g0450581' => 'rch', 'RcHm_v2.0_Chr4g0390371' => 'rch', 'RcHm_v2.0_Chr4g0390381' => 'rch', 'RcHm_v2.0_Chr4g0390491' => 'rch', 'RcHm_v2.0_Chr4g0390501' => 'rch', 'RcHm_v2.0_Chr6g0289231' => 'rch', 'Rhsim04G0190400' => 'rsi', 'Rhsim04G0190500' => 'rsi', 'Rhsim04G0190600' => 'rsi', 'Rhsim13G0031400' => 'rsi', 'Rhsim13G0165600' => 'rsi', 'RhsimUnG0114600' => 'rsi', 'RhsimUnG0114700' => 'rsi', 'Sabra02G0034800' => 'sbr', 'Sabra02G0035100' => 'sbr', 'Sabra05G0168600' => 'sbr', 'Sabra05G0168800' => 'sbr', 'Sabra08G0123700' => 'sbr', 'Sabra10G0031900' => 'sbr', 'Sabra13G0039000' => 'sbr', 'SalBow2G0782' => 'sbo', 'SalBow2G1403' => 'sbo', 'SalBow4G0074' => 'sbo', 'SalBow4G2635' => 'sbo', 'SalBow5G3010' => 'sbo', 'Sc05g0000870' => 'sci', 'Sc05g0000890' => 'sci', 'Sc13g0005000' => 'sci', 'Sc13g0005030' => 'sci', 'Sc19g0003790' => 'sci', 'Sc19g0003800' => 'sci', 'Sed0003467' => 'sed', 'Sed0009355' => 'sed', 'Sed0009894' => 'sed', 'Sed0011972' => 'sed', 'Sed0021483' => 'sed', 'Sed0021750' => 'sed', 'Sed0026279' => 'sed', 'SEGI_05312' => 'sgi', 'SEGI_10112' => 'sgi', 'SEGI_15835' => 'sgi', 'SEGI_30386' => 'sgi', 'SEGI_34122' => 'sgi', 'SEGI_35063' => 'sgi', 'SGA_v2.0_scaffold101G29794' => 'sas', 'SGA_v2.0_scaffold1G00573' => 'sas', 'SGA_v2.0_scaffold79G25637' => 'sas', 'SGA_v2.0_scaffold88G27283' => 'sas', 'SGA_v2.0_scaffold88G27285' => 'sas', 'SGA_v2.0_scaffold88G27331' => 'sas', 'SHI09937' => 'shi', 'SMO119G0302' => 'smo', 'SMO137G0231' => 'smo', 'SMO367G1151' => 'smo', 'Solyc02g082000.3' => 'sly', 'Solyc06g031670.3' => 'sly', 'Solyc06g053810.3' => 'sly', 'Solyc07g025457.1' => 'sly', 'Solyc08g059740.1' => 'sly', 'Solyc08g059750.3' => 'sly', 'Solyc09g083370.3' => 'sly', 'Solyc12g038950.3' => 'sly', 'Sopen02g026630' => 'spe', 'Sopen06g018930' => 'spe', 'Sopen06g018940' => 'spe', 'Sopen08g009460' => 'spe', 'Sopen09g032290' => 'spe', 'Sp1g03080' => 'spa', 'Sp1g03090' => 'spa', 'Sp1g05480' => 'spa', 'Sp2g07860' => 'spa', 'Sp2g08430' => 'spa', 'Sp2g08440' => 'spa', 'Sp2g26200' => 'spa', 'Sp4g13170' => 'spa', 'Sp6g33840' => 'spa', 'SpUn1204_0010' => 'spa', 'TAR365G0908' => 'tar', 'TAR381G1270' => 'tar', 'TAR381G1651' => 'tar', 'TAR625G1131' => 'tar', 'TAR633G0962' => 'tar', 'TAR633G1729' => 'tar', 'TAR633G1864' => 'tar', 'TAR636G0221' => 'tar', 'TAR636G0314' => 'tar', 'TAR636G3202' => 'tar', 'THA.LOC104800805' => 'tha', 'THA.LOC104801096' => 'tha', 'THA.LOC104801555' => 'tha', 'THA.LOC104808491' => 'tha', 'THA.LOC104808595' => 'tha', 'THA.LOC104815985' => 'tha', 'THA.LOC104822250' => 'tha', 'THA.LOC104826071' => 'tha', 'Thecc.01G265200' => 'tca', 'Thecc.01G265300' => 'tca', 'Thecc.01G265700' => 'tca', 'Thecc.03G109100' => 'tca', 'Thecc.04G245900' => 'tca', 'Thecc.04G246000' => 'tca', 'Thhalv10003334m.g' => 'esa', 'Thhalv10005508m.g' => 'esa', 'Thhalv10005643m.g' => 'esa', 'Thhalv10007316m.g' => 'esa', 'Thhalv10009006m.g' => 'esa', 'Thhalv10009309m.g' => 'esa', 'Thhalv10014917m.g' => 'esa', 'Thhalv10014919m.g' => 'esa', 'Thhalv10015393m.g' => 'esa', 'Thhalv10016515m.g' => 'esa', 'Thhalv10029242m.g' => 'esa', 'TPR.G16654' => 'tpr', 'TPR.G20589' => 'tpr', 'TPR.G23029' => 'tpr', 'TPR.G27731' => 'tpr', 'TPR.G28889' => 'tpr', 'TPR.G28899' => 'tpr', 'TPR.G30846' => 'tpr', 'TPR.G5452' => 'tpr', 'TPR.G5713' => 'tpr', 'TPR.G9046' => 'tpr', 'TPR.G9061' => 'tpr', 'TWI09G1075' => 'twi', 'TWI12G0806' => 'twi', 'TWI18G0108' => 'twi', 'TWI53G1361' => 'twi', 'TWI73G0185' => 'twi', 'TWI73G0427' => 'twi', 'unitig_37.g12001' => 'ugi', 'unitig_747.g21660' => 'ugi', 'unitig_748.g7232' => 'ugi', 'unitig_748.g7315' => 'ugi', 'unitig_85.g27262' => 'ugi', 'unitig_92.g28220' => 'ugi', 'vmacro02632' => 'vma', 'vmacro08410' => 'vma', 'vmacro08411' => 'vma', 'vmacro15407' => 'vma', 'VMungo0251G3619' => 'vmu', 'VMungo0720G1204' => 'vmu', 'VMungo0720G1918' => 'vmu', 'VMungo0720G2387' => 'vmu', 'VMungo0720G2961' => 'vmu', 'VMungo1215G2154' => 'vmu', 'VMungo1383G2411' => 'vmu', 'Zm00001eb051130' => 'zma', 'Zm00001eb116830' => 'zma', 'Zm00001eb116850' => 'zma', 'Zm00001eb151740' => 'zma', 'Zm00001eb292360' => 'zma', 'Zm00001eb301640' => 'zma' ), 'gf_id' => 'HOM05D000856', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000856' ), 'data_identifier' => 'HOM05D000856', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000856', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p00010' => 'bna', 'A03p04160' => 'bna', 'A03p17160' => 'bna', 'A04p23370' => 'bna', 'A05p14860' => 'bna', 'A08p37020' => 'bna', 'A09p08050' => 'bna', 'A09p66800' => 'bna', 'A09p67940' => 'bna', 'A10p02680' => 'bna', 'A10p05320' => 'bna', 'Aa31LG1G20560' => 'aar', 'Aa31LG1G20610' => 'aar', 'Aa31LG1G7810' => 'aar', 'Aa31LG5G3590' => 'aar', 'Aa31LG5G6140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3819' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4683' => 'aag', 'Actinidia04480' => 'ach', 'Actinidia05466' => 'ach', 'Actinidia08445' => 'ach', 'Actinidia21170' => 'ach', 'Actinidia24812' => 'ach', 'Actinidia24951' => 'ach', 'Actinidia40088' => 'ach', 'Ah.02g111660' => 'amhyb', 'Ah.11g048900' => 'amhyb', 'Ah.11g049910' => 'amhyb', 'AL1G13870' => 'aly', 'AL1G13880' => 'aly', 'AL1G16760' => 'aly', 'AL390U10020' => 'aly', 'AL4G25520' => 'aly', 'AL6G19890' => 'aly', 'AL6G19900' => 'aly', 'AL6G19910' => 'aly', 'AL8G40100' => 'aly', 'Aqoxy2G03562' => 'aox', 'Aqoxy5G00316' => 'aox', 'Aqoxy5G00926' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1628KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1H403S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2FU6SJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.882I6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8YRY2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YN1SN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AF70II' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZA8L1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F916KL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHRD8H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KTZ8QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S22EMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8M29T' => 'arhy', 'AT1G04270' => 'ath', 'AT1G04280' => 'ath', 'AT1G06750' => 'ath', 'AT1G33850' => 'ath', 'AT2G30630' => 'ath', 'AT5G09490' => 'ath', 'AT5G09500' => 'ath', 'AT5G09510' => 'ath', 'AT5G43640' => 'ath', 'AT5G63070' => 'ath', 'ATR0605G315' => 'atr', 'Atru.chr11.175' => 'acertr', 'Atru.chr11.653' => 'acertr', 'Atru.chr3.1616' => 'acertr', 'Atru.chr4.2230' => 'acertr', 'Atru.chr4.2232' => 'acertr', 'Atru.chr5.1598' => 'acertr', 'Atru.chr5.1600' => 'acertr', 'Atru.chr5.2188' => 'acertr', 'AUR62008326' => 'cqu', 'AUR62011922' => 'cqu', 'AUR62011924' => 'cqu', 'AUR62021771' => 'cqu', 'AUR62032237' => 'cqu', 'AUR62032240' => 'cqu', 'BcaB01g05572' => 'bca', 'BcaB02g10337' => 'bca', 'BcaB04g19944' => 'bca', 'BcaB05g21548' => 'bca', 'BcaB05g21549' => 'bca', 'BcaB05g23227' => 'bca', 'BcaB06g26256' => 'bca', 'BcaB06g26257' => 'bca', 'BcaB06g28379' => 'bca', 'BcaC02g11159' => 'bca', 'BcaC03g13258' => 'bca', 'BcaC03g13259' => 'bca', 'BcaC05g24456' => 'bca', 'BcaC05g24457' => 'bca', 'BcaC07g36922' => 'bca', 'BcaC07g36923' => 'bca', 'BcaC07g42050' => 'bca', 'BcaC07g42176' => 'bca', 'BcaC07g42195' => 'bca', 'BcaC07g42196' => 'bca', 'BcaNung06674' => 'bca', 'BolC2t06351H' => 'bol', 'BolC2t06352H' => 'bol', 'BolC3t12993H' => 'bol', 'BolC4t23525H' => 'bol', 'BolC4t27475H' => 'bol', 'BolC5t29025H' => 'bol', 'BolC5t29026H' => 'bol', 'BolC8t46898H' => 'bol', 'BolC8t46899H' => 'bol', 'BolC8t52630H' => 'bol', 'BolC8t52765H' => 'bol', 'BolC9t53824H' => 'bol', 'BraA03t09760Z' => 'bra', 'BraA03t10990Z' => 'bra', 'BraA05t20413Z' => 'bra', 'BraA08t35602Z' => 'bra', 'BraA09t36458Z' => 'bra', 'BraA09t42018Z' => 'bra', 'BraA09t42129Z' => 'bra', 'BraA10t42536Z' => 'bra', 'BraA10t42537Z' => 'bra', 'C01p10690' => 'bna', 'C02p03890' => 'bna', 'C02p03900' => 'bna', 'C03p04620' => 'bna', 'C04p19870' => 'bna', 'C04p59670' => 'bna', 'C05p02460' => 'bna', 'C05p02470' => 'bna', 'C08p00980' => 'bna', 'C08p00990' => 'bna', 'C08p51030' => 'bna', 'C08p52360' => 'bna', 'C09p09120' => 'bna', 'CAN.G19.15' => 'can', 'CAN.G251.10' => 'can', 'CAN.G251.9' => 'can', 'CAN.G398.24' => 'can', 'CAN.G410.32' => 'can', 'CAN.G881.2' => 'can', 'CANSAT01G3025' => 'cansat', 'CANSAT78G1211' => 'cansat', 'CANSAT78G1218' => 'cansat', 'CANSAT78G1521' => 'cansat', 'CANSAT78G1670' => 'cansat', 'CARHR003600' => 'chi', 'CARHR003610' => 'chi', 'CARHR006290' => 'chi', 'CARHR006430' => 'chi', 'CARHR124110' => 'chi', 'CARHR203870' => 'chi', 'CARHR203880' => 'chi', 'CARHR203890' => 'chi', 'CARHR276880' => 'chi', 'Carub.0001s0346' => 'cru', 'Carub.0001s0347' => 'cru', 'Carub.0001s0607' => 'cru', 'Carub.0003s2768' => 'cru', 'Carub.0003s2769' => 'cru', 'Carub.0004s1178' => 'cru', 'Carub.0006s0806' => 'cru', 'Carub.0006s0807' => 'cru', 'Carub.0006s0808' => 'cru', 'Carub.0008s0501' => 'cru', 'Carub.0008s2379' => 'cru', 'Ca_08655_v3' => 'car', 'Ca_08922_v3' => 'car', 'Ca_08923_v3' => 'car', 'Ca_09119_v3' => 'car', 'Ca_09703_v3' => 'car', 'Ca_09705_v3' => 'car', 'Ca_09835_v3' => 'car', 'Ca_26403_v3' => 'car', 'Ca_30719_v3' => 'car', 'CBR_g17958' => 'cbr', 'CBR_g40516' => 'cbr', 'Cc00_g05350' => 'ccan', 'Cc01_g18690' => 'ccan', 'Cc03_g04830' => 'ccan', 'Cc03_g04850' => 'ccan', 'CDE02G4469' => 'cde', 'CDE06G0883' => 'cde', 'CDE06G1295' => 'cde', 'CDE06G1390' => 'cde', 'CDE07G0584' => 'cde', 'CDE07G1084' => 'cde', 'CDE08G1259' => 'cde', 'Cfa002341' => 'cfa', 'Cfa024337' => 'cfa', 'Ciclev10004749m.g' => 'ccl', 'Ciclev10006127m.g' => 'ccl', 'Ciclev10019720m.g' => 'ccl', 'Ciclev10022652m.g' => 'ccl', 'CiPaw.01G190400' => 'cil', 'CiPaw.01G190500' => 'cil', 'CiPaw.02G116400' => 'cil', 'CiPaw.02G116500' => 'cil', 'CiPaw.04G183000' => 'cil', 'CiPaw.04G183300' => 'cil', 'ClCG05G004610' => 'cla', 'ClCG05G004620' => 'cla', 'ClCG06G006730' => 'cla', 'ClCG06G006740' => 'cla', 'ClCG11G003690' => 'cla', 'COL.COLO4_08276' => 'col', 'COL.COLO4_08277' => 'col', 'COL.COLO4_15787' => 'col', 'COL.COLO4_15789' => 'col', 'Cpa.g.c44815' => 'cpa', 'Cpa.g.sc52.144' => 'cpa', 'Cpa.g.sc58.46' => 'cpa', 'Cpa.g.sc58.47' => 'cpa', 'Cre08.g360900' => 'cre', 'CsaV3_2G013030' => 'csa', 'CsaV3_2G013050' => 'csa', 'CsaV3_2G015620' => 'csa', 'CsaV3_3G012590' => 'csa', 'CsaV3_3G012600' => 'csa', 'CSS0001641' => 'camsi', 'CSS0008310' => 'camsi', 'CSS0013011' => 'camsi', 'CSS0017147' => 'camsi', 'CSS0022970' => 'camsi', 'CSS0025655' => 'camsi', 'CSS0028665' => 'camsi', 'CSS0029117' => 'camsi', 'CSS0032024' => 'camsi', 'CSS0039681' => 'camsi', 'CSS0046516' => 'camsi', 'CSS0050307' => 'camsi', 'DCAR_005871' => 'dca', 'DCAR_007342' => 'dca', 'DCAR_024228' => 'dca', 'DCAR_027277' => 'dca', 'DCAR_030718' => 'dca', 'Dinv20287' => 'din', 'Dinv22461' => 'din', 'Dinv22464' => 'din', 'Dinv29912' => 'din', 'Dinv29913' => 'din', 'Dinv34580' => 'din', 'Dinv34582' => 'din', 'Dinv44632' => 'din', 'Duzib052G0266' => 'dzi', 'Duzib133G0907' => 'dzi', 'Duzib133G1034' => 'dzi', 'Duzib138G0207' => 'dzi', 'Duzib138G0491' => 'dzi', 'Duzib151G0812' => 'dzi', 'Duzib151G1166' => 'dzi', 'Duzib168G0192' => 'dzi', 'Duzib211G0077' => 'dzi', 'Duzib212G0429' => 'dzi', 'Duzib212G0472' => 'dzi', 'ECA233G2617' => 'eca', 'ECA236G4188' => 'eca', 'ECA240G0936' => 'eca', 'ECA240G1129' => 'eca', 'ECA247G0623' => 'eca', 'EL10Ac5g10451' => 'bvu', 'EL10Ac5g10453' => 'bvu', 'EL10Ac5g10894' => 'bvu', 'Eucgr.H00192' => 'egr', 'Eucgr.H00193' => 'egr', 'Eucgr.H00194' => 'egr', 'Eucgr.J01562' => 'egr', 'Eucgr.K03301' => 'egr', 'FAN02G0632' => 'fan', 'FAN05G5378' => 'fan', 'FAN09G3247' => 'fan', 'FAN12G0435' => 'fan', 'FAN12G2426' => 'fan', 'FAN14G1707' => 'fan', 'FAN14G4725' => 'fan', 'FAN15G2071' => 'fan', 'FAN17G3065' => 'fan', 'FAN19G1376' => 'fan', 'FAN20G0354' => 'fan', 'FAN20G2429' => 'fan', 'FAN20G2658' => 'fan', 'FAN24G2343' => 'fan', 'FAN27G2362' => 'fan', 'FAN28G1765' => 'fan', 'FvH4_1g16020' => 'fve', 'FvH4_2g04890' => 'fve', 'FvH4_2g22270' => 'fve', 'FvH4_4g02630' => 'fve', 'FvH4_4g02640' => 'fve', 'FvH4_6g02650' => 'fve', 'Glyma.02G140600' => 'gma', 'Glyma.03G159900' => 'gma', 'Glyma.05G234800' => 'gma', 'Glyma.07G269600' => 'gma', 'Glyma.08G042300' => 'gma', 'Glyma.10G033500' => 'gma', 'Glyma.10G185200' => 'gma', 'Glyma.17G004300' => 'gma', 'Glyma.19G161900' => 'gma', 'Glyma.20G205100' => 'gma', 'Glyma.20G205200' => 'gma', 'Gohir.A01G139101' => 'ghi', 'Gohir.A02G035600' => 'ghi', 'Gohir.A02G117901' => 'ghi', 'Gohir.A07G210100' => 'ghi', 'Gohir.A07G210200' => 'ghi', 'Gohir.A08G061100' => 'ghi', 'Gohir.A09G223000' => 'ghi', 'Gohir.A09G223100' => 'ghi', 'Gohir.A10G113900' => 'ghi', 'Gohir.A10G114000' => 'ghi', 'Gohir.D02G042300' => 'ghi', 'Gohir.D07G216100' => 'ghi', 'Gohir.D07G216200' => 'ghi', 'Gohir.D08G070400' => 'ghi', 'Gohir.D09G225000' => 'ghi', 'Gohir.D09G225100' => 'ghi', 'Gohir.D10G152300' => 'ghi', 'Gohir.D10G153200' => 'ghi', 'Gohir.D11G133701' => 'ghi', 'Gorai.004G074100' => 'gra', 'Gorai.005G046800' => 'gra', 'Gorai.006G246500' => 'gra', 'Gorai.006G246600' => 'gra', 'Gorai.007G142900' => 'gra', 'Gorai.011G171000' => 'gra', 'Gorai.011G171100' => 'gra', 'Gorai.013G104300' => 'gra', 'Gorai.013G104400' => 'gra', 'GSVIVG01000754001' => 'vvi', 'GSVIVG01000756001' => 'vvi', 'GSVIVG01010903001' => 'vvi', 'GSVIVG01017623001' => 'vvi', 'GSVIVG01018113001' => 'vvi', 'GSVIVG01018116001' => 'vvi', 'GSVIVG01018118001' => 'vvi', 'HanXRQChr03g0076211' => 'han', 'HanXRQChr03g0092431' => 'han', 'HanXRQChr03g0092441' => 'han', 'HanXRQChr03g0092591' => 'han', 'HanXRQChr03g0092671' => 'han', 'HanXRQChr03g0092681' => 'han', 'HanXRQChr03g0092691' => 'han', 'HanXRQChr03g0092701' => 'han', 'HanXRQChr03g0092721' => 'han', 'HanXRQChr03g0092731' => 'han', 'HanXRQChr04g0113681' => 'han', 'HanXRQChr10g0281371' => 'han', 'HanXRQChr11g0337141' => 'han', 'HanXRQChr13g0424521' => 'han', 'HanXRQChr13g0424531' => 'han', 'HanXRQChr13g0424541' => 'han', 'HanXRQChr16g0498221' => 'han', 'Haze_04377' => 'cav', 'Haze_11298' => 'cav', 'Haze_24547' => 'cav', 'Haze_24550' => 'cav', 'Haze_26587' => 'cav', 'Hma1.2p1_0650F.1_g195410' => 'hma', 'Hma1.2p1_0893F.1_g233470' => 'hma', 'HPP92_006508' => 'vpl', 'HPP92_024780' => 'vpl', 'Hund02688' => 'sun', 'Hund09380' => 'sun', 'Hund09381' => 'sun', 'Hund09832' => 'sun', 'Hund09833' => 'sun', 'Hund11351' => 'sun', 'Hund11513' => 'sun', 'Lalb_Chr06g0162591' => 'lal', 'Lalb_Chr06g0162601' => 'lal', 'Lalb_Chr06g0169321' => 'lal', 'Lalb_Chr09g0330951' => 'lal', 'Lalb_Chr16g0387631' => 'lal', 'Lalb_Chr21g0306241' => 'lal', 'Lalb_Chr25g0290051' => 'lal', 'Lalb_Chr25g0290061' => 'lal', 'Lalb_Chr25g0290071' => 'lal', 'Lj1g0003876' => 'lja', 'Lj1P1207T36' => 'lonja', 'Lj2C1156G12' => 'lonja', 'Lj3A793G39' => 'lonja', 'Lj3C580G2' => 'lonja', 'Lj3C780G2' => 'lonja', 'Lj3C780T4' => 'lonja', 'Lj3C793G9' => 'lonja', 'Lj4g0012960' => 'lja', 'Lj5g0021252' => 'lja', 'Lj5g0021484' => 'lja', 'Lj5g0024528' => 'lja', 'Lj6A399T12' => 'lonja', 'Lj6A656G65' => 'lonja', 'Lsat_1_v5_gn_3_125500' => 'lsa', 'Lsat_1_v5_gn_3_125540' => 'lsa', 'Lsat_1_v5_gn_5_72701' => 'lsa', 'Lsat_1_v5_gn_8_91560' => 'lsa', 'Lsat_1_v5_gn_9_9640' => 'lsa', 'Manes.01G200600' => 'mes', 'Manes.01G200700' => 'mes', 'Manes.03G168900' => 'mes', 'Manes.03G169000' => 'mes', 'Manes.05G085801' => 'mes', 'Manes.05G086200' => 'mes', 'Manes.15G036700' => 'mes', 'Manes.15G036900' => 'mes', 'Mapoly0004s0172' => 'mpo', 'Mapoly0023s0001' => 'mpo', 'Mapoly0142s0012' => 'mpo', 'MBI01_g32854_MAGBIO' => 'mbi', 'MBI11_g24427_MAGBIO' => 'mbi', 'MBI11_g47319_MAGBIO' => 'mbi', 'MCO01G433' => 'mco', 'MD00G1187800' => 'mdo', 'MD04G1226500' => 'mdo', 'MD05G1203900' => 'mdo', 'MD10G1191100' => 'mdo', 'MD12G1243500' => 'mdo', 'MD13G1207000' => 'mdo', 'MD13G1207100' => 'mdo', 'MD16G1208600' => 'mdo', 'Medtr1g050352' => 'mtr', 'Medtr1g070385' => 'mtr', 'Medtr1g070450' => 'mtr', 'Medtr1g075200' => 'mtr', 'Medtr1g075250' => 'mtr', 'Medtr1g075260' => 'mtr', 'Medtr1g475250' => 'mtr', 'Medtr4g075450' => 'mtr', 'Medtr7g096300' => 'mtr', 'Medtr8g105110' => 'mtr', 'MELO3C006470.2' => 'cme', 'MELO3C006471.2' => 'cme', 'MELO3C020772.2' => 'cme', 'MELO3C026780.2' => 'cme', 'MELO3C026781.2' => 'cme', 'Migut.D00390' => 'egut', 'Migut.G00435' => 'egut', 'Migut.G00436' => 'egut', 'Migut.G00718' => 'egut', 'MSTRG.21891' => 'ama', 'MSTRG.26910' => 'ama', 'MSTRG.4099' => 'ama', 'MSTRG.9925' => 'ama', 'Nitab4.5_0000165g0010' => 'nta', 'Nitab4.5_0000209g0180' => 'nta', 'Nitab4.5_0000244g0440' => 'nta', 'Nitab4.5_0000525g0220' => 'nta', 'Nitab4.5_0001597g0020' => 'nta', 'Nitab4.5_0001878g0040' => 'nta', 'Nitab4.5_0001878g0060' => 'nta', 'Nitab4.5_0002838g0100' => 'nta', 'Nitab4.5_0002838g0120' => 'nta', 'Nitab4.5_0004798g0030' => 'nta', 'Nitab4.5_0005420g0010' => 'nta', 'Nitab4.5_0005507g0010' => 'nta', 'Nitab4.5_0005574g0020' => 'nta', 'Nitab4.5_0005838g0010' => 'nta', 'Nitab4.5_0010580g0020' => 'nta', 'Nn1g02599' => 'nnu', 'Nn1g02608' => 'nnu', 'Nn3g17742' => 'nnu', 'Nn3g19534' => 'nnu', 'Nn3g19535' => 'nnu', 'Oeu008790.1' => 'oeu', 'Oeu008792.1' => 'oeu', 'Oeu032590.1' => 'oeu', 'Oeu035349.1' => 'oeu', 'Oeu049791.1' => 'oeu', 'Os01g0774500' => 'osa', 'Os03g0628800' => 'osa', 'Os03g0798600' => 'osa', 'Os05g0508800' => 'osa', 'Peaxi162Scf00036g02018' => 'pax', 'Peaxi162Scf00578g00032' => 'pax', 'Peaxi162Scf00578g00317' => 'pax', 'Peaxi162Scf00785g00114' => 'pax', 'Peaxi162Scf00813g00119' => 'pax', 'Peaxi162Scf00906g00227' => 'pax', 'PGR004G0875' => 'pgr', 'PGR004G2424' => 'pgr', 'PGR031G1239' => 'pgr', 'PGR031G2474' => 'pgr', 'PGR044G0423' => 'pgr', 'PGSC0003DMG400001128' => 'stu', 'PGSC0003DMG400007336' => 'stu', 'PGSC0003DMG400016318' => 'stu', 'PGSC0003DMG400016319' => 'stu', 'PGSC0003DMG400018074' => 'stu', 'Phvul.001G157700' => 'pvu', 'Phvul.002G148550' => 'pvu', 'Phvul.002G320200' => 'pvu', 'Phvul.003G089200' => 'pvu', 'Phvul.007G126000' => 'pvu', 'Phvul.007G126100' => 'pvu', 'Phvul.007G178000' => 'pvu', 'Phvul.007G178200' => 'pvu', 'Potri.002G043000' => 'ptr', 'Potri.002G043200' => 'ptr', 'Potri.003G123750' => 'ptr', 'Potri.005G055401' => 'ptr', 'Potri.005G219700' => 'ptr', 'Potri.005G220000' => 'ptr', 'Potri.008G161901' => 'ptr', 'Potri.008G162000' => 'ptr', 'Potri.008G162400' => 'ptr', 'Potri.010G076900' => 'ptr', 'Pp3c12_9180' => 'ppa', 'Pp3c13_19770' => 'ppa', 'Pp3c14_22950' => 'ppa', 'Pp3c16_12160' => 'ppa', 'Pp3c27_7820' => 'ppa', 'Pp3c2_3490' => 'ppa', 'Pp3c3_23700' => 'ppa', 'Pp3c3_36520' => 'ppa', 'Pp3c4_15250' => 'ppa', 'PRCOL_00007002' => 'pco', 'Prupe.1G030600' => 'ppe', 'Prupe.1G030700' => 'ppe', 'Prupe.6G345200' => 'ppe', 'Prupe.8G230300' => 'ppe', 'Prupe.8G230500' => 'ppe', 'Psat3g059600' => 'psa', 'Psat5g200920' => 'psa', 'Psat6g056440' => 'psa', 'Psat6g057360' => 'psa', 'Psat6g134120' => 'psa', 'Psat6g134160' => 'psa', 'Psat7g008640' => 'psa', 'Psat7g185240' => 'psa', 'PSO017G1330' => 'pso', 'PSO063G6097' => 'pso', 'PSO170G0835' => 'pso', 'PSO170G2499' => 'pso', 'PSO210G5058' => 'pso', 'PSO210G6154' => 'pso', 'PSO585G0031' => 'pso', 'PSO832G0264' => 'pso', 'PSO832G4288' => 'pso', 'QL03p027355' => 'qlo', 'QL03p027430' => 'qlo', 'QL04p081380' => 'qlo', 'QL06p015642' => 'qlo', 'QL06p015650' => 'qlo', 'QL06p015686' => 'qlo', 'QL12p042927' => 'qlo', 'QL93p1863_0035' => 'qlo', 'RcHm_v2.0_Chr3g0450581' => 'rch', 'RcHm_v2.0_Chr4g0390371' => 'rch', 'RcHm_v2.0_Chr4g0390381' => 'rch', 'RcHm_v2.0_Chr4g0390491' => 'rch', 'RcHm_v2.0_Chr4g0390501' => 'rch', 'RcHm_v2.0_Chr6g0289231' => 'rch', 'Rhsim04G0190400' => 'rsi', 'Rhsim04G0190500' => 'rsi', 'Rhsim04G0190600' => 'rsi', 'Rhsim13G0031400' => 'rsi', 'Rhsim13G0165600' => 'rsi', 'RhsimUnG0114600' => 'rsi', 'RhsimUnG0114700' => 'rsi', 'Sabra02G0034800' => 'sbr', 'Sabra02G0035100' => 'sbr', 'Sabra05G0168600' => 'sbr', 'Sabra05G0168800' => 'sbr', 'Sabra08G0123700' => 'sbr', 'Sabra10G0031900' => 'sbr', 'Sabra13G0039000' => 'sbr', 'SalBow2G0782' => 'sbo', 'SalBow2G1403' => 'sbo', 'SalBow4G0074' => 'sbo', 'SalBow4G2635' => 'sbo', 'SalBow5G3010' => 'sbo', 'Sc05g0000870' => 'sci', 'Sc05g0000890' => 'sci', 'Sc13g0005000' => 'sci', 'Sc13g0005030' => 'sci', 'Sc19g0003790' => 'sci', 'Sc19g0003800' => 'sci', 'Sed0003467' => 'sed', 'Sed0009355' => 'sed', 'Sed0009894' => 'sed', 'Sed0011972' => 'sed', 'Sed0021483' => 'sed', 'Sed0021750' => 'sed', 'Sed0026279' => 'sed', 'SEGI_05312' => 'sgi', 'SEGI_10112' => 'sgi', 'SEGI_15835' => 'sgi', 'SEGI_30386' => 'sgi', 'SEGI_34122' => 'sgi', 'SEGI_35063' => 'sgi', 'SGA_v2.0_scaffold101G29794' => 'sas', 'SGA_v2.0_scaffold1G00573' => 'sas', 'SGA_v2.0_scaffold79G25637' => 'sas', 'SGA_v2.0_scaffold88G27283' => 'sas', 'SGA_v2.0_scaffold88G27285' => 'sas', 'SGA_v2.0_scaffold88G27331' => 'sas', 'SHI09937' => 'shi', 'SMO119G0302' => 'smo', 'SMO137G0231' => 'smo', 'SMO367G1151' => 'smo', 'Solyc02g082000.3' => 'sly', 'Solyc06g031670.3' => 'sly', 'Solyc06g053810.3' => 'sly', 'Solyc07g025457.1' => 'sly', 'Solyc08g059740.1' => 'sly', 'Solyc08g059750.3' => 'sly', 'Solyc09g083370.3' => 'sly', 'Solyc12g038950.3' => 'sly', 'Sopen02g026630' => 'spe', 'Sopen06g018930' => 'spe', 'Sopen06g018940' => 'spe', 'Sopen08g009460' => 'spe', 'Sopen09g032290' => 'spe', 'Sp1g03080' => 'spa', 'Sp1g03090' => 'spa', 'Sp1g05480' => 'spa', 'Sp2g07860' => 'spa', 'Sp2g08430' => 'spa', 'Sp2g08440' => 'spa', 'Sp2g26200' => 'spa', 'Sp4g13170' => 'spa', 'Sp6g33840' => 'spa', 'SpUn1204_0010' => 'spa', 'TAR365G0908' => 'tar', 'TAR381G1270' => 'tar', 'TAR381G1651' => 'tar', 'TAR625G1131' => 'tar', 'TAR633G0962' => 'tar', 'TAR633G1729' => 'tar', 'TAR633G1864' => 'tar', 'TAR636G0221' => 'tar', 'TAR636G0314' => 'tar', 'TAR636G3202' => 'tar', 'THA.LOC104800805' => 'tha', 'THA.LOC104801096' => 'tha', 'THA.LOC104801555' => 'tha', 'THA.LOC104808491' => 'tha', 'THA.LOC104808595' => 'tha', 'THA.LOC104815985' => 'tha', 'THA.LOC104822250' => 'tha', 'THA.LOC104826071' => 'tha', 'Thecc.01G265200' => 'tca', 'Thecc.01G265300' => 'tca', 'Thecc.01G265700' => 'tca', 'Thecc.03G109100' => 'tca', 'Thecc.04G245900' => 'tca', 'Thecc.04G246000' => 'tca', 'Thhalv10003334m.g' => 'esa', 'Thhalv10005508m.g' => 'esa', 'Thhalv10005643m.g' => 'esa', 'Thhalv10007316m.g' => 'esa', 'Thhalv10009006m.g' => 'esa', 'Thhalv10009309m.g' => 'esa', 'Thhalv10014917m.g' => 'esa', 'Thhalv10014919m.g' => 'esa', 'Thhalv10015393m.g' => 'esa', 'Thhalv10016515m.g' => 'esa', 'Thhalv10029242m.g' => 'esa', 'TPR.G16654' => 'tpr', 'TPR.G20589' => 'tpr', 'TPR.G23029' => 'tpr', 'TPR.G27731' => 'tpr', 'TPR.G28889' => 'tpr', 'TPR.G28899' => 'tpr', 'TPR.G30846' => 'tpr', 'TPR.G5452' => 'tpr', 'TPR.G5713' => 'tpr', 'TPR.G9046' => 'tpr', 'TPR.G9061' => 'tpr', 'TWI09G1075' => 'twi', 'TWI12G0806' => 'twi', 'TWI18G0108' => 'twi', 'TWI53G1361' => 'twi', 'TWI73G0185' => 'twi', 'TWI73G0427' => 'twi', 'unitig_37.g12001' => 'ugi', 'unitig_747.g21660' => 'ugi', 'unitig_748.g7232' => 'ugi', 'unitig_748.g7315' => 'ugi', 'unitig_85.g27262' => 'ugi', 'unitig_92.g28220' => 'ugi', 'vmacro02632' => 'vma', 'vmacro08410' => 'vma', 'vmacro08411' => 'vma', 'vmacro15407' => 'vma', 'VMungo0251G3619' => 'vmu', 'VMungo0720G1204' => 'vmu', 'VMungo0720G1918' => 'vmu', 'VMungo0720G2387' => 'vmu', 'VMungo0720G2961' => 'vmu', 'VMungo1215G2154' => 'vmu', 'VMungo1383G2411' => 'vmu', 'Zm00001eb051130' => 'zma', 'Zm00001eb116830' => 'zma', 'Zm00001eb116850' => 'zma', 'Zm00001eb151740' => 'zma', 'Zm00001eb292360' => 'zma', 'Zm00001eb301640' => 'zma' ) $gf_id = 'HOM05D000856' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000856' ) $data_identifier = 'HOM05D000856' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 13, 'ath' => (int) 10, 'atr' => (int) 1, 'acertr' => (int) 8, 'cqu' => (int) 6, 'bca' => (int) 21, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 11, 'car' => (int) 9, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 8, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 5, 'fan' => (int) 16, 'fve' => (int) 6, 'gma' => (int) 11, 'ghi' => (int) 19, 'gra' => (int) 9, 'vvi' => (int) 7, 'han' => (int) 17, 'cav' => (int) 5, 'hma' => (int) 2, 'vpl' => (int) 2, 'sun' => (int) 7, 'lal' => (int) 9, 'lja' => (int) 5, 'lonja' => (int) 9, 'lsa' => (int) 5, 'mes' => (int) 8, 'mpo' => (int) 3, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 10, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 15, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 9, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 9, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 6, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 5, 'spa' => (int) 10, 'tar' => (int) 10, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 11, 'tpr' => (int) 11, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 4, 'vmu' => (int) 7, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb301640' $species_info = array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ) $local_species = 'tca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000856', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p00010' => 'bna', 'A03p04160' => 'bna', 'A03p17160' => 'bna', 'A04p23370' => 'bna', 'A05p14860' => 'bna', 'A08p37020' => 'bna', 'A09p08050' => 'bna', 'A09p66800' => 'bna', 'A09p67940' => 'bna', 'A10p02680' => 'bna', 'A10p05320' => 'bna', 'Aa31LG1G20560' => 'aar', 'Aa31LG1G20610' => 'aar', 'Aa31LG1G7810' => 'aar', 'Aa31LG5G3590' => 'aar', 'Aa31LG5G6140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3819' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4683' => 'aag', 'Actinidia04480' => 'ach', 'Actinidia05466' => 'ach', 'Actinidia08445' => 'ach', 'Actinidia21170' => 'ach', 'Actinidia24812' => 'ach', 'Actinidia24951' => 'ach', 'Actinidia40088' => 'ach', 'Ah.02g111660' => 'amhyb', 'Ah.11g048900' => 'amhyb', 'Ah.11g049910' => 'amhyb', 'AL1G13870' => 'aly', 'AL1G13880' => 'aly', 'AL1G16760' => 'aly', 'AL390U10020' => 'aly', 'AL4G25520' => 'aly', 'AL6G19890' => 'aly', 'AL6G19900' => 'aly', 'AL6G19910' => 'aly', 'AL8G40100' => 'aly', 'Aqoxy2G03562' => 'aox', 'Aqoxy5G00316' => 'aox', 'Aqoxy5G00926' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1628KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1H403S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2FU6SJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.882I6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8YRY2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YN1SN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AF70II' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZA8L1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F916KL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHRD8H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KTZ8QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S22EMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8M29T' => 'arhy', 'AT1G04270' => 'ath', 'AT1G04280' => 'ath', 'AT1G06750' => 'ath', 'AT1G33850' => 'ath', 'AT2G30630' => 'ath', 'AT5G09490' => 'ath', 'AT5G09500' => 'ath', 'AT5G09510' => 'ath', 'AT5G43640' => 'ath', 'AT5G63070' => 'ath', 'ATR0605G315' => 'atr', 'Atru.chr11.175' => 'acertr', 'Atru.chr11.653' => 'acertr', 'Atru.chr3.1616' => 'acertr', 'Atru.chr4.2230' => 'acertr', 'Atru.chr4.2232' => 'acertr', 'Atru.chr5.1598' => 'acertr', 'Atru.chr5.1600' => 'acertr', 'Atru.chr5.2188' => 'acertr', 'AUR62008326' => 'cqu', 'AUR62011922' => 'cqu', 'AUR62011924' => 'cqu', 'AUR62021771' => 'cqu', 'AUR62032237' => 'cqu', 'AUR62032240' => 'cqu', 'BcaB01g05572' => 'bca', 'BcaB02g10337' => 'bca', 'BcaB04g19944' => 'bca', 'BcaB05g21548' => 'bca', 'BcaB05g21549' => 'bca', 'BcaB05g23227' => 'bca', 'BcaB06g26256' => 'bca', 'BcaB06g26257' => 'bca', 'BcaB06g28379' => 'bca', 'BcaC02g11159' => 'bca', 'BcaC03g13258' => 'bca', 'BcaC03g13259' => 'bca', 'BcaC05g24456' => 'bca', 'BcaC05g24457' => 'bca', 'BcaC07g36922' => 'bca', 'BcaC07g36923' => 'bca', 'BcaC07g42050' => 'bca', 'BcaC07g42176' => 'bca', 'BcaC07g42195' => 'bca', 'BcaC07g42196' => 'bca', 'BcaNung06674' => 'bca', 'BolC2t06351H' => 'bol', 'BolC2t06352H' => 'bol', 'BolC3t12993H' => 'bol', 'BolC4t23525H' => 'bol', 'BolC4t27475H' => 'bol', 'BolC5t29025H' => 'bol', 'BolC5t29026H' => 'bol', 'BolC8t46898H' => 'bol', 'BolC8t46899H' => 'bol', 'BolC8t52630H' => 'bol', 'BolC8t52765H' => 'bol', 'BolC9t53824H' => 'bol', 'BraA03t09760Z' => 'bra', 'BraA03t10990Z' => 'bra', 'BraA05t20413Z' => 'bra', 'BraA08t35602Z' => 'bra', 'BraA09t36458Z' => 'bra', 'BraA09t42018Z' => 'bra', 'BraA09t42129Z' => 'bra', 'BraA10t42536Z' => 'bra', 'BraA10t42537Z' => 'bra', 'C01p10690' => 'bna', 'C02p03890' => 'bna', 'C02p03900' => 'bna', 'C03p04620' => 'bna', 'C04p19870' => 'bna', 'C04p59670' => 'bna', 'C05p02460' => 'bna', 'C05p02470' => 'bna', 'C08p00980' => 'bna', 'C08p00990' => 'bna', 'C08p51030' => 'bna', 'C08p52360' => 'bna', 'C09p09120' => 'bna', 'CAN.G19.15' => 'can', 'CAN.G251.10' => 'can', 'CAN.G251.9' => 'can', 'CAN.G398.24' => 'can', 'CAN.G410.32' => 'can', 'CAN.G881.2' => 'can', 'CANSAT01G3025' => 'cansat', 'CANSAT78G1211' => 'cansat', 'CANSAT78G1218' => 'cansat', 'CANSAT78G1521' => 'cansat', 'CANSAT78G1670' => 'cansat', 'CARHR003600' => 'chi', 'CARHR003610' => 'chi', 'CARHR006290' => 'chi', 'CARHR006430' => 'chi', 'CARHR124110' => 'chi', 'CARHR203870' => 'chi', 'CARHR203880' => 'chi', 'CARHR203890' => 'chi', 'CARHR276880' => 'chi', 'Carub.0001s0346' => 'cru', 'Carub.0001s0347' => 'cru', 'Carub.0001s0607' => 'cru', 'Carub.0003s2768' => 'cru', 'Carub.0003s2769' => 'cru', 'Carub.0004s1178' => 'cru', 'Carub.0006s0806' => 'cru', 'Carub.0006s0807' => 'cru', 'Carub.0006s0808' => 'cru', 'Carub.0008s0501' => 'cru', 'Carub.0008s2379' => 'cru', 'Ca_08655_v3' => 'car', 'Ca_08922_v3' => 'car', 'Ca_08923_v3' => 'car', 'Ca_09119_v3' => 'car', 'Ca_09703_v3' => 'car', 'Ca_09705_v3' => 'car', 'Ca_09835_v3' => 'car', 'Ca_26403_v3' => 'car', 'Ca_30719_v3' => 'car', 'CBR_g17958' => 'cbr', 'CBR_g40516' => 'cbr', 'Cc00_g05350' => 'ccan', 'Cc01_g18690' => 'ccan', 'Cc03_g04830' => 'ccan', 'Cc03_g04850' => 'ccan', 'CDE02G4469' => 'cde', 'CDE06G0883' => 'cde', 'CDE06G1295' => 'cde', 'CDE06G1390' => 'cde', 'CDE07G0584' => 'cde', 'CDE07G1084' => 'cde', 'CDE08G1259' => 'cde', 'Cfa002341' => 'cfa', 'Cfa024337' => 'cfa', 'Ciclev10004749m.g' => 'ccl', 'Ciclev10006127m.g' => 'ccl', 'Ciclev10019720m.g' => 'ccl', 'Ciclev10022652m.g' => 'ccl', 'CiPaw.01G190400' => 'cil', 'CiPaw.01G190500' => 'cil', 'CiPaw.02G116400' => 'cil', 'CiPaw.02G116500' => 'cil', 'CiPaw.04G183000' => 'cil', 'CiPaw.04G183300' => 'cil', 'ClCG05G004610' => 'cla', 'ClCG05G004620' => 'cla', 'ClCG06G006730' => 'cla', 'ClCG06G006740' => 'cla', 'ClCG11G003690' => 'cla', 'COL.COLO4_08276' => 'col', 'COL.COLO4_08277' => 'col', 'COL.COLO4_15787' => 'col', 'COL.COLO4_15789' => 'col', 'Cpa.g.c44815' => 'cpa', 'Cpa.g.sc52.144' => 'cpa', 'Cpa.g.sc58.46' => 'cpa', 'Cpa.g.sc58.47' => 'cpa', 'Cre08.g360900' => 'cre', 'CsaV3_2G013030' => 'csa', 'CsaV3_2G013050' => 'csa', 'CsaV3_2G015620' => 'csa', 'CsaV3_3G012590' => 'csa', 'CsaV3_3G012600' => 'csa', 'CSS0001641' => 'camsi', 'CSS0008310' => 'camsi', 'CSS0013011' => 'camsi', 'CSS0017147' => 'camsi', 'CSS0022970' => 'camsi', 'CSS0025655' => 'camsi', 'CSS0028665' => 'camsi', 'CSS0029117' => 'camsi', 'CSS0032024' => 'camsi', 'CSS0039681' => 'camsi', 'CSS0046516' => 'camsi', 'CSS0050307' => 'camsi', 'DCAR_005871' => 'dca', 'DCAR_007342' => 'dca', 'DCAR_024228' => 'dca', 'DCAR_027277' => 'dca', 'DCAR_030718' => 'dca', 'Dinv20287' => 'din', 'Dinv22461' => 'din', 'Dinv22464' => 'din', 'Dinv29912' => 'din', 'Dinv29913' => 'din', 'Dinv34580' => 'din', 'Dinv34582' => 'din', 'Dinv44632' => 'din', 'Duzib052G0266' => 'dzi', 'Duzib133G0907' => 'dzi', 'Duzib133G1034' => 'dzi', 'Duzib138G0207' => 'dzi', 'Duzib138G0491' => 'dzi', 'Duzib151G0812' => 'dzi', 'Duzib151G1166' => 'dzi', 'Duzib168G0192' => 'dzi', 'Duzib211G0077' => 'dzi', 'Duzib212G0429' => 'dzi', 'Duzib212G0472' => 'dzi', 'ECA233G2617' => 'eca', 'ECA236G4188' => 'eca', 'ECA240G0936' => 'eca', 'ECA240G1129' => 'eca', 'ECA247G0623' => 'eca', 'EL10Ac5g10451' => 'bvu', 'EL10Ac5g10453' => 'bvu', 'EL10Ac5g10894' => 'bvu', 'Eucgr.H00192' => 'egr', 'Eucgr.H00193' => 'egr', 'Eucgr.H00194' => 'egr', 'Eucgr.J01562' => 'egr', 'Eucgr.K03301' => 'egr', 'FAN02G0632' => 'fan', 'FAN05G5378' => 'fan', 'FAN09G3247' => 'fan', 'FAN12G0435' => 'fan', 'FAN12G2426' => 'fan', 'FAN14G1707' => 'fan', 'FAN14G4725' => 'fan', 'FAN15G2071' => 'fan', 'FAN17G3065' => 'fan', 'FAN19G1376' => 'fan', 'FAN20G0354' => 'fan', 'FAN20G2429' => 'fan', 'FAN20G2658' => 'fan', 'FAN24G2343' => 'fan', 'FAN27G2362' => 'fan', 'FAN28G1765' => 'fan', 'FvH4_1g16020' => 'fve', 'FvH4_2g04890' => 'fve', 'FvH4_2g22270' => 'fve', 'FvH4_4g02630' => 'fve', 'FvH4_4g02640' => 'fve', 'FvH4_6g02650' => 'fve', 'Glyma.02G140600' => 'gma', 'Glyma.03G159900' => 'gma', 'Glyma.05G234800' => 'gma', 'Glyma.07G269600' => 'gma', 'Glyma.08G042300' => 'gma', 'Glyma.10G033500' => 'gma', 'Glyma.10G185200' => 'gma', 'Glyma.17G004300' => 'gma', 'Glyma.19G161900' => 'gma', 'Glyma.20G205100' => 'gma', 'Glyma.20G205200' => 'gma', 'Gohir.A01G139101' => 'ghi', 'Gohir.A02G035600' => 'ghi', 'Gohir.A02G117901' => 'ghi', 'Gohir.A07G210100' => 'ghi', 'Gohir.A07G210200' => 'ghi', 'Gohir.A08G061100' => 'ghi', 'Gohir.A09G223000' => 'ghi', 'Gohir.A09G223100' => 'ghi', 'Gohir.A10G113900' => 'ghi', 'Gohir.A10G114000' => 'ghi', 'Gohir.D02G042300' => 'ghi', 'Gohir.D07G216100' => 'ghi', 'Gohir.D07G216200' => 'ghi', 'Gohir.D08G070400' => 'ghi', 'Gohir.D09G225000' => 'ghi', 'Gohir.D09G225100' => 'ghi', 'Gohir.D10G152300' => 'ghi', 'Gohir.D10G153200' => 'ghi', 'Gohir.D11G133701' => 'ghi', 'Gorai.004G074100' => 'gra', 'Gorai.005G046800' => 'gra', 'Gorai.006G246500' => 'gra', 'Gorai.006G246600' => 'gra', 'Gorai.007G142900' => 'gra', 'Gorai.011G171000' => 'gra', 'Gorai.011G171100' => 'gra', 'Gorai.013G104300' => 'gra', 'Gorai.013G104400' => 'gra', 'GSVIVG01000754001' => 'vvi', 'GSVIVG01000756001' => 'vvi', 'GSVIVG01010903001' => 'vvi', 'GSVIVG01017623001' => 'vvi', 'GSVIVG01018113001' => 'vvi', 'GSVIVG01018116001' => 'vvi', 'GSVIVG01018118001' => 'vvi', 'HanXRQChr03g0076211' => 'han', 'HanXRQChr03g0092431' => 'han', 'HanXRQChr03g0092441' => 'han', 'HanXRQChr03g0092591' => 'han', 'HanXRQChr03g0092671' => 'han', 'HanXRQChr03g0092681' => 'han', 'HanXRQChr03g0092691' => 'han', 'HanXRQChr03g0092701' => 'han', 'HanXRQChr03g0092721' => 'han', 'HanXRQChr03g0092731' => 'han', 'HanXRQChr04g0113681' => 'han', 'HanXRQChr10g0281371' => 'han', 'HanXRQChr11g0337141' => 'han', 'HanXRQChr13g0424521' => 'han', 'HanXRQChr13g0424531' => 'han', 'HanXRQChr13g0424541' => 'han', 'HanXRQChr16g0498221' => 'han', 'Haze_04377' => 'cav', 'Haze_11298' => 'cav', 'Haze_24547' => 'cav', 'Haze_24550' => 'cav', 'Haze_26587' => 'cav', 'Hma1.2p1_0650F.1_g195410' => 'hma', 'Hma1.2p1_0893F.1_g233470' => 'hma', 'HPP92_006508' => 'vpl', 'HPP92_024780' => 'vpl', 'Hund02688' => 'sun', 'Hund09380' => 'sun', 'Hund09381' => 'sun', 'Hund09832' => 'sun', 'Hund09833' => 'sun', 'Hund11351' => 'sun', 'Hund11513' => 'sun', 'Lalb_Chr06g0162591' => 'lal', 'Lalb_Chr06g0162601' => 'lal', 'Lalb_Chr06g0169321' => 'lal', 'Lalb_Chr09g0330951' => 'lal', 'Lalb_Chr16g0387631' => 'lal', 'Lalb_Chr21g0306241' => 'lal', 'Lalb_Chr25g0290051' => 'lal', 'Lalb_Chr25g0290061' => 'lal', 'Lalb_Chr25g0290071' => 'lal', 'Lj1g0003876' => 'lja', 'Lj1P1207T36' => 'lonja', 'Lj2C1156G12' => 'lonja', 'Lj3A793G39' => 'lonja', 'Lj3C580G2' => 'lonja', 'Lj3C780G2' => 'lonja', 'Lj3C780T4' => 'lonja', 'Lj3C793G9' => 'lonja', 'Lj4g0012960' => 'lja', 'Lj5g0021252' => 'lja', 'Lj5g0021484' => 'lja', 'Lj5g0024528' => 'lja', 'Lj6A399T12' => 'lonja', 'Lj6A656G65' => 'lonja', 'Lsat_1_v5_gn_3_125500' => 'lsa', 'Lsat_1_v5_gn_3_125540' => 'lsa', 'Lsat_1_v5_gn_5_72701' => 'lsa', 'Lsat_1_v5_gn_8_91560' => 'lsa', 'Lsat_1_v5_gn_9_9640' => 'lsa', 'Manes.01G200600' => 'mes', 'Manes.01G200700' => 'mes', 'Manes.03G168900' => 'mes', 'Manes.03G169000' => 'mes', 'Manes.05G085801' => 'mes', 'Manes.05G086200' => 'mes', 'Manes.15G036700' => 'mes', 'Manes.15G036900' => 'mes', 'Mapoly0004s0172' => 'mpo', 'Mapoly0023s0001' => 'mpo', 'Mapoly0142s0012' => 'mpo', 'MBI01_g32854_MAGBIO' => 'mbi', 'MBI11_g24427_MAGBIO' => 'mbi', 'MBI11_g47319_MAGBIO' => 'mbi', 'MCO01G433' => 'mco', 'MD00G1187800' => 'mdo', 'MD04G1226500' => 'mdo', 'MD05G1203900' => 'mdo', 'MD10G1191100' => 'mdo', 'MD12G1243500' => 'mdo', 'MD13G1207000' => 'mdo', 'MD13G1207100' => 'mdo', 'MD16G1208600' => 'mdo', 'Medtr1g050352' => 'mtr', 'Medtr1g070385' => 'mtr', 'Medtr1g070450' => 'mtr', 'Medtr1g075200' => 'mtr', 'Medtr1g075250' => 'mtr', 'Medtr1g075260' => 'mtr', 'Medtr1g475250' => 'mtr', 'Medtr4g075450' => 'mtr', 'Medtr7g096300' => 'mtr', 'Medtr8g105110' => 'mtr', 'MELO3C006470.2' => 'cme', 'MELO3C006471.2' => 'cme', 'MELO3C020772.2' => 'cme', 'MELO3C026780.2' => 'cme', 'MELO3C026781.2' => 'cme', 'Migut.D00390' => 'egut', 'Migut.G00435' => 'egut', 'Migut.G00436' => 'egut', 'Migut.G00718' => 'egut', 'MSTRG.21891' => 'ama', 'MSTRG.26910' => 'ama', 'MSTRG.4099' => 'ama', 'MSTRG.9925' => 'ama', 'Nitab4.5_0000165g0010' => 'nta', 'Nitab4.5_0000209g0180' => 'nta', 'Nitab4.5_0000244g0440' => 'nta', 'Nitab4.5_0000525g0220' => 'nta', 'Nitab4.5_0001597g0020' => 'nta', 'Nitab4.5_0001878g0040' => 'nta', 'Nitab4.5_0001878g0060' => 'nta', 'Nitab4.5_0002838g0100' => 'nta', 'Nitab4.5_0002838g0120' => 'nta', 'Nitab4.5_0004798g0030' => 'nta', 'Nitab4.5_0005420g0010' => 'nta', 'Nitab4.5_0005507g0010' => 'nta', 'Nitab4.5_0005574g0020' => 'nta', 'Nitab4.5_0005838g0010' => 'nta', 'Nitab4.5_0010580g0020' => 'nta', 'Nn1g02599' => 'nnu', 'Nn1g02608' => 'nnu', 'Nn3g17742' => 'nnu', 'Nn3g19534' => 'nnu', 'Nn3g19535' => 'nnu', 'Oeu008790.1' => 'oeu', 'Oeu008792.1' => 'oeu', 'Oeu032590.1' => 'oeu', 'Oeu035349.1' => 'oeu', 'Oeu049791.1' => 'oeu', 'Os01g0774500' => 'osa', 'Os03g0628800' => 'osa', 'Os03g0798600' => 'osa', 'Os05g0508800' => 'osa', 'Peaxi162Scf00036g02018' => 'pax', 'Peaxi162Scf00578g00032' => 'pax', 'Peaxi162Scf00578g00317' => 'pax', 'Peaxi162Scf00785g00114' => 'pax', 'Peaxi162Scf00813g00119' => 'pax', 'Peaxi162Scf00906g00227' => 'pax', 'PGR004G0875' => 'pgr', 'PGR004G2424' => 'pgr', 'PGR031G1239' => 'pgr', 'PGR031G2474' => 'pgr', 'PGR044G0423' => 'pgr', 'PGSC0003DMG400001128' => 'stu', 'PGSC0003DMG400007336' => 'stu', 'PGSC0003DMG400016318' => 'stu', 'PGSC0003DMG400016319' => 'stu', 'PGSC0003DMG400018074' => 'stu', 'Phvul.001G157700' => 'pvu', 'Phvul.002G148550' => 'pvu', 'Phvul.002G320200' => 'pvu', 'Phvul.003G089200' => 'pvu', 'Phvul.007G126000' => 'pvu', 'Phvul.007G126100' => 'pvu', 'Phvul.007G178000' => 'pvu', 'Phvul.007G178200' => 'pvu', 'Potri.002G043000' => 'ptr', 'Potri.002G043200' => 'ptr', 'Potri.003G123750' => 'ptr', 'Potri.005G055401' => 'ptr', 'Potri.005G219700' => 'ptr', 'Potri.005G220000' => 'ptr', 'Potri.008G161901' => 'ptr', 'Potri.008G162000' => 'ptr', 'Potri.008G162400' => 'ptr', 'Potri.010G076900' => 'ptr', 'Pp3c12_9180' => 'ppa', 'Pp3c13_19770' => 'ppa', 'Pp3c14_22950' => 'ppa', 'Pp3c16_12160' => 'ppa', 'Pp3c27_7820' => 'ppa', 'Pp3c2_3490' => 'ppa', 'Pp3c3_23700' => 'ppa', 'Pp3c3_36520' => 'ppa', 'Pp3c4_15250' => 'ppa', 'PRCOL_00007002' => 'pco', 'Prupe.1G030600' => 'ppe', 'Prupe.1G030700' => 'ppe', 'Prupe.6G345200' => 'ppe', 'Prupe.8G230300' => 'ppe', 'Prupe.8G230500' => 'ppe', 'Psat3g059600' => 'psa', 'Psat5g200920' => 'psa', 'Psat6g056440' => 'psa', 'Psat6g057360' => 'psa', 'Psat6g134120' => 'psa', 'Psat6g134160' => 'psa', 'Psat7g008640' => 'psa', 'Psat7g185240' => 'psa', 'PSO017G1330' => 'pso', 'PSO063G6097' => 'pso', 'PSO170G0835' => 'pso', 'PSO170G2499' => 'pso', 'PSO210G5058' => 'pso', 'PSO210G6154' => 'pso', 'PSO585G0031' => 'pso', 'PSO832G0264' => 'pso', 'PSO832G4288' => 'pso', 'QL03p027355' => 'qlo', 'QL03p027430' => 'qlo', 'QL04p081380' => 'qlo', 'QL06p015642' => 'qlo', 'QL06p015650' => 'qlo', 'QL06p015686' => 'qlo', 'QL12p042927' => 'qlo', 'QL93p1863_0035' => 'qlo', 'RcHm_v2.0_Chr3g0450581' => 'rch', 'RcHm_v2.0_Chr4g0390371' => 'rch', 'RcHm_v2.0_Chr4g0390381' => 'rch', 'RcHm_v2.0_Chr4g0390491' => 'rch', 'RcHm_v2.0_Chr4g0390501' => 'rch', 'RcHm_v2.0_Chr6g0289231' => 'rch', 'Rhsim04G0190400' => 'rsi', 'Rhsim04G0190500' => 'rsi', 'Rhsim04G0190600' => 'rsi', 'Rhsim13G0031400' => 'rsi', 'Rhsim13G0165600' => 'rsi', 'RhsimUnG0114600' => 'rsi', 'RhsimUnG0114700' => 'rsi', 'Sabra02G0034800' => 'sbr', 'Sabra02G0035100' => 'sbr', 'Sabra05G0168600' => 'sbr', 'Sabra05G0168800' => 'sbr', 'Sabra08G0123700' => 'sbr', 'Sabra10G0031900' => 'sbr', 'Sabra13G0039000' => 'sbr', 'SalBow2G0782' => 'sbo', 'SalBow2G1403' => 'sbo', 'SalBow4G0074' => 'sbo', 'SalBow4G2635' => 'sbo', 'SalBow5G3010' => 'sbo', 'Sc05g0000870' => 'sci', 'Sc05g0000890' => 'sci', 'Sc13g0005000' => 'sci', 'Sc13g0005030' => 'sci', 'Sc19g0003790' => 'sci', 'Sc19g0003800' => 'sci', 'Sed0003467' => 'sed', 'Sed0009355' => 'sed', 'Sed0009894' => 'sed', 'Sed0011972' => 'sed', 'Sed0021483' => 'sed', 'Sed0021750' => 'sed', 'Sed0026279' => 'sed', 'SEGI_05312' => 'sgi', 'SEGI_10112' => 'sgi', 'SEGI_15835' => 'sgi', 'SEGI_30386' => 'sgi', 'SEGI_34122' => 'sgi', 'SEGI_35063' => 'sgi', 'SGA_v2.0_scaffold101G29794' => 'sas', 'SGA_v2.0_scaffold1G00573' => 'sas', 'SGA_v2.0_scaffold79G25637' => 'sas', 'SGA_v2.0_scaffold88G27283' => 'sas', 'SGA_v2.0_scaffold88G27285' => 'sas', 'SGA_v2.0_scaffold88G27331' => 'sas', 'SHI09937' => 'shi', 'SMO119G0302' => 'smo', 'SMO137G0231' => 'smo', 'SMO367G1151' => 'smo', 'Solyc02g082000.3' => 'sly', 'Solyc06g031670.3' => 'sly', 'Solyc06g053810.3' => 'sly', 'Solyc07g025457.1' => 'sly', 'Solyc08g059740.1' => 'sly', 'Solyc08g059750.3' => 'sly', 'Solyc09g083370.3' => 'sly', 'Solyc12g038950.3' => 'sly', 'Sopen02g026630' => 'spe', 'Sopen06g018930' => 'spe', 'Sopen06g018940' => 'spe', 'Sopen08g009460' => 'spe', 'Sopen09g032290' => 'spe', 'Sp1g03080' => 'spa', 'Sp1g03090' => 'spa', 'Sp1g05480' => 'spa', 'Sp2g07860' => 'spa', 'Sp2g08430' => 'spa', 'Sp2g08440' => 'spa', 'Sp2g26200' => 'spa', 'Sp4g13170' => 'spa', 'Sp6g33840' => 'spa', 'SpUn1204_0010' => 'spa', 'TAR365G0908' => 'tar', 'TAR381G1270' => 'tar', 'TAR381G1651' => 'tar', 'TAR625G1131' => 'tar', 'TAR633G0962' => 'tar', 'TAR633G1729' => 'tar', 'TAR633G1864' => 'tar', 'TAR636G0221' => 'tar', 'TAR636G0314' => 'tar', 'TAR636G3202' => 'tar', 'THA.LOC104800805' => 'tha', 'THA.LOC104801096' => 'tha', 'THA.LOC104801555' => 'tha', 'THA.LOC104808491' => 'tha', 'THA.LOC104808595' => 'tha', 'THA.LOC104815985' => 'tha', 'THA.LOC104822250' => 'tha', 'THA.LOC104826071' => 'tha', 'Thecc.01G265200' => 'tca', 'Thecc.01G265300' => 'tca', 'Thecc.01G265700' => 'tca', 'Thecc.03G109100' => 'tca', 'Thecc.04G245900' => 'tca', 'Thecc.04G246000' => 'tca', 'Thhalv10003334m.g' => 'esa', 'Thhalv10005508m.g' => 'esa', 'Thhalv10005643m.g' => 'esa', 'Thhalv10007316m.g' => 'esa', 'Thhalv10009006m.g' => 'esa', 'Thhalv10009309m.g' => 'esa', 'Thhalv10014917m.g' => 'esa', 'Thhalv10014919m.g' => 'esa', 'Thhalv10015393m.g' => 'esa', 'Thhalv10016515m.g' => 'esa', 'Thhalv10029242m.g' => 'esa', 'TPR.G16654' => 'tpr', 'TPR.G20589' => 'tpr', 'TPR.G23029' => 'tpr', 'TPR.G27731' => 'tpr', 'TPR.G28889' => 'tpr', 'TPR.G28899' => 'tpr', 'TPR.G30846' => 'tpr', 'TPR.G5452' => 'tpr', 'TPR.G5713' => 'tpr', 'TPR.G9046' => 'tpr', 'TPR.G9061' => 'tpr', 'TWI09G1075' => 'twi', 'TWI12G0806' => 'twi', 'TWI18G0108' => 'twi', 'TWI53G1361' => 'twi', 'TWI73G0185' => 'twi', 'TWI73G0427' => 'twi', 'unitig_37.g12001' => 'ugi', 'unitig_747.g21660' => 'ugi', 'unitig_748.g7232' => 'ugi', 'unitig_748.g7315' => 'ugi', 'unitig_85.g27262' => 'ugi', 'unitig_92.g28220' => 'ugi', 'vmacro02632' => 'vma', 'vmacro08410' => 'vma', 'vmacro08411' => 'vma', 'vmacro15407' => 'vma', 'VMungo0251G3619' => 'vmu', 'VMungo0720G1204' => 'vmu', 'VMungo0720G1918' => 'vmu', 'VMungo0720G2387' => 'vmu', 'VMungo0720G2961' => 'vmu', 'VMungo1215G2154' => 'vmu', 'VMungo1383G2411' => 'vmu', 'Zm00001eb051130' => 'zma', 'Zm00001eb116830' => 'zma', 'Zm00001eb116850' => 'zma', 'Zm00001eb151740' => 'zma', 'Zm00001eb292360' => 'zma', 'Zm00001eb301640' => 'zma' ), 'gf_id' => 'HOM05D000856', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000856' ), 'data_identifier' => 'HOM05D000856', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000856', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p00010' => 'bna', 'A03p04160' => 'bna', 'A03p17160' => 'bna', 'A04p23370' => 'bna', 'A05p14860' => 'bna', 'A08p37020' => 'bna', 'A09p08050' => 'bna', 'A09p66800' => 'bna', 'A09p67940' => 'bna', 'A10p02680' => 'bna', 'A10p05320' => 'bna', 'Aa31LG1G20560' => 'aar', 'Aa31LG1G20610' => 'aar', 'Aa31LG1G7810' => 'aar', 'Aa31LG5G3590' => 'aar', 'Aa31LG5G6140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3819' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4683' => 'aag', 'Actinidia04480' => 'ach', 'Actinidia05466' => 'ach', 'Actinidia08445' => 'ach', 'Actinidia21170' => 'ach', 'Actinidia24812' => 'ach', 'Actinidia24951' => 'ach', 'Actinidia40088' => 'ach', 'Ah.02g111660' => 'amhyb', 'Ah.11g048900' => 'amhyb', 'Ah.11g049910' => 'amhyb', 'AL1G13870' => 'aly', 'AL1G13880' => 'aly', 'AL1G16760' => 'aly', 'AL390U10020' => 'aly', 'AL4G25520' => 'aly', 'AL6G19890' => 'aly', 'AL6G19900' => 'aly', 'AL6G19910' => 'aly', 'AL8G40100' => 'aly', 'Aqoxy2G03562' => 'aox', 'Aqoxy5G00316' => 'aox', 'Aqoxy5G00926' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1628KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1H403S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2FU6SJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.882I6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8YRY2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YN1SN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AF70II' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZA8L1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F916KL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHRD8H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KTZ8QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S22EMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8M29T' => 'arhy', 'AT1G04270' => 'ath', 'AT1G04280' => 'ath', 'AT1G06750' => 'ath', 'AT1G33850' => 'ath', 'AT2G30630' => 'ath', 'AT5G09490' => 'ath', 'AT5G09500' => 'ath', 'AT5G09510' => 'ath', 'AT5G43640' => 'ath', 'AT5G63070' => 'ath', 'ATR0605G315' => 'atr', 'Atru.chr11.175' => 'acertr', 'Atru.chr11.653' => 'acertr', 'Atru.chr3.1616' => 'acertr', 'Atru.chr4.2230' => 'acertr', 'Atru.chr4.2232' => 'acertr', 'Atru.chr5.1598' => 'acertr', 'Atru.chr5.1600' => 'acertr', 'Atru.chr5.2188' => 'acertr', 'AUR62008326' => 'cqu', 'AUR62011922' => 'cqu', 'AUR62011924' => 'cqu', 'AUR62021771' => 'cqu', 'AUR62032237' => 'cqu', 'AUR62032240' => 'cqu', 'BcaB01g05572' => 'bca', 'BcaB02g10337' => 'bca', 'BcaB04g19944' => 'bca', 'BcaB05g21548' => 'bca', 'BcaB05g21549' => 'bca', 'BcaB05g23227' => 'bca', 'BcaB06g26256' => 'bca', 'BcaB06g26257' => 'bca', 'BcaB06g28379' => 'bca', 'BcaC02g11159' => 'bca', 'BcaC03g13258' => 'bca', 'BcaC03g13259' => 'bca', 'BcaC05g24456' => 'bca', 'BcaC05g24457' => 'bca', 'BcaC07g36922' => 'bca', 'BcaC07g36923' => 'bca', 'BcaC07g42050' => 'bca', 'BcaC07g42176' => 'bca', 'BcaC07g42195' => 'bca', 'BcaC07g42196' => 'bca', 'BcaNung06674' => 'bca', 'BolC2t06351H' => 'bol', 'BolC2t06352H' => 'bol', 'BolC3t12993H' => 'bol', 'BolC4t23525H' => 'bol', 'BolC4t27475H' => 'bol', 'BolC5t29025H' => 'bol', 'BolC5t29026H' => 'bol', 'BolC8t46898H' => 'bol', 'BolC8t46899H' => 'bol', 'BolC8t52630H' => 'bol', 'BolC8t52765H' => 'bol', 'BolC9t53824H' => 'bol', 'BraA03t09760Z' => 'bra', 'BraA03t10990Z' => 'bra', 'BraA05t20413Z' => 'bra', 'BraA08t35602Z' => 'bra', 'BraA09t36458Z' => 'bra', 'BraA09t42018Z' => 'bra', 'BraA09t42129Z' => 'bra', 'BraA10t42536Z' => 'bra', 'BraA10t42537Z' => 'bra', 'C01p10690' => 'bna', 'C02p03890' => 'bna', 'C02p03900' => 'bna', 'C03p04620' => 'bna', 'C04p19870' => 'bna', 'C04p59670' => 'bna', 'C05p02460' => 'bna', 'C05p02470' => 'bna', 'C08p00980' => 'bna', 'C08p00990' => 'bna', 'C08p51030' => 'bna', 'C08p52360' => 'bna', 'C09p09120' => 'bna', 'CAN.G19.15' => 'can', 'CAN.G251.10' => 'can', 'CAN.G251.9' => 'can', 'CAN.G398.24' => 'can', 'CAN.G410.32' => 'can', 'CAN.G881.2' => 'can', 'CANSAT01G3025' => 'cansat', 'CANSAT78G1211' => 'cansat', 'CANSAT78G1218' => 'cansat', 'CANSAT78G1521' => 'cansat', 'CANSAT78G1670' => 'cansat', 'CARHR003600' => 'chi', 'CARHR003610' => 'chi', 'CARHR006290' => 'chi', 'CARHR006430' => 'chi', 'CARHR124110' => 'chi', 'CARHR203870' => 'chi', 'CARHR203880' => 'chi', 'CARHR203890' => 'chi', 'CARHR276880' => 'chi', 'Carub.0001s0346' => 'cru', 'Carub.0001s0347' => 'cru', 'Carub.0001s0607' => 'cru', 'Carub.0003s2768' => 'cru', 'Carub.0003s2769' => 'cru', 'Carub.0004s1178' => 'cru', 'Carub.0006s0806' => 'cru', 'Carub.0006s0807' => 'cru', 'Carub.0006s0808' => 'cru', 'Carub.0008s0501' => 'cru', 'Carub.0008s2379' => 'cru', 'Ca_08655_v3' => 'car', 'Ca_08922_v3' => 'car', 'Ca_08923_v3' => 'car', 'Ca_09119_v3' => 'car', 'Ca_09703_v3' => 'car', 'Ca_09705_v3' => 'car', 'Ca_09835_v3' => 'car', 'Ca_26403_v3' => 'car', 'Ca_30719_v3' => 'car', 'CBR_g17958' => 'cbr', 'CBR_g40516' => 'cbr', 'Cc00_g05350' => 'ccan', 'Cc01_g18690' => 'ccan', 'Cc03_g04830' => 'ccan', 'Cc03_g04850' => 'ccan', 'CDE02G4469' => 'cde', 'CDE06G0883' => 'cde', 'CDE06G1295' => 'cde', 'CDE06G1390' => 'cde', 'CDE07G0584' => 'cde', 'CDE07G1084' => 'cde', 'CDE08G1259' => 'cde', 'Cfa002341' => 'cfa', 'Cfa024337' => 'cfa', 'Ciclev10004749m.g' => 'ccl', 'Ciclev10006127m.g' => 'ccl', 'Ciclev10019720m.g' => 'ccl', 'Ciclev10022652m.g' => 'ccl', 'CiPaw.01G190400' => 'cil', 'CiPaw.01G190500' => 'cil', 'CiPaw.02G116400' => 'cil', 'CiPaw.02G116500' => 'cil', 'CiPaw.04G183000' => 'cil', 'CiPaw.04G183300' => 'cil', 'ClCG05G004610' => 'cla', 'ClCG05G004620' => 'cla', 'ClCG06G006730' => 'cla', 'ClCG06G006740' => 'cla', 'ClCG11G003690' => 'cla', 'COL.COLO4_08276' => 'col', 'COL.COLO4_08277' => 'col', 'COL.COLO4_15787' => 'col', 'COL.COLO4_15789' => 'col', 'Cpa.g.c44815' => 'cpa', 'Cpa.g.sc52.144' => 'cpa', 'Cpa.g.sc58.46' => 'cpa', 'Cpa.g.sc58.47' => 'cpa', 'Cre08.g360900' => 'cre', 'CsaV3_2G013030' => 'csa', 'CsaV3_2G013050' => 'csa', 'CsaV3_2G015620' => 'csa', 'CsaV3_3G012590' => 'csa', 'CsaV3_3G012600' => 'csa', 'CSS0001641' => 'camsi', 'CSS0008310' => 'camsi', 'CSS0013011' => 'camsi', 'CSS0017147' => 'camsi', 'CSS0022970' => 'camsi', 'CSS0025655' => 'camsi', 'CSS0028665' => 'camsi', 'CSS0029117' => 'camsi', 'CSS0032024' => 'camsi', 'CSS0039681' => 'camsi', 'CSS0046516' => 'camsi', 'CSS0050307' => 'camsi', 'DCAR_005871' => 'dca', 'DCAR_007342' => 'dca', 'DCAR_024228' => 'dca', 'DCAR_027277' => 'dca', 'DCAR_030718' => 'dca', 'Dinv20287' => 'din', 'Dinv22461' => 'din', 'Dinv22464' => 'din', 'Dinv29912' => 'din', 'Dinv29913' => 'din', 'Dinv34580' => 'din', 'Dinv34582' => 'din', 'Dinv44632' => 'din', 'Duzib052G0266' => 'dzi', 'Duzib133G0907' => 'dzi', 'Duzib133G1034' => 'dzi', 'Duzib138G0207' => 'dzi', 'Duzib138G0491' => 'dzi', 'Duzib151G0812' => 'dzi', 'Duzib151G1166' => 'dzi', 'Duzib168G0192' => 'dzi', 'Duzib211G0077' => 'dzi', 'Duzib212G0429' => 'dzi', 'Duzib212G0472' => 'dzi', 'ECA233G2617' => 'eca', 'ECA236G4188' => 'eca', 'ECA240G0936' => 'eca', 'ECA240G1129' => 'eca', 'ECA247G0623' => 'eca', 'EL10Ac5g10451' => 'bvu', 'EL10Ac5g10453' => 'bvu', 'EL10Ac5g10894' => 'bvu', 'Eucgr.H00192' => 'egr', 'Eucgr.H00193' => 'egr', 'Eucgr.H00194' => 'egr', 'Eucgr.J01562' => 'egr', 'Eucgr.K03301' => 'egr', 'FAN02G0632' => 'fan', 'FAN05G5378' => 'fan', 'FAN09G3247' => 'fan', 'FAN12G0435' => 'fan', 'FAN12G2426' => 'fan', 'FAN14G1707' => 'fan', 'FAN14G4725' => 'fan', 'FAN15G2071' => 'fan', 'FAN17G3065' => 'fan', 'FAN19G1376' => 'fan', 'FAN20G0354' => 'fan', 'FAN20G2429' => 'fan', 'FAN20G2658' => 'fan', 'FAN24G2343' => 'fan', 'FAN27G2362' => 'fan', 'FAN28G1765' => 'fan', 'FvH4_1g16020' => 'fve', 'FvH4_2g04890' => 'fve', 'FvH4_2g22270' => 'fve', 'FvH4_4g02630' => 'fve', 'FvH4_4g02640' => 'fve', 'FvH4_6g02650' => 'fve', 'Glyma.02G140600' => 'gma', 'Glyma.03G159900' => 'gma', 'Glyma.05G234800' => 'gma', 'Glyma.07G269600' => 'gma', 'Glyma.08G042300' => 'gma', 'Glyma.10G033500' => 'gma', 'Glyma.10G185200' => 'gma', 'Glyma.17G004300' => 'gma', 'Glyma.19G161900' => 'gma', 'Glyma.20G205100' => 'gma', 'Glyma.20G205200' => 'gma', 'Gohir.A01G139101' => 'ghi', 'Gohir.A02G035600' => 'ghi', 'Gohir.A02G117901' => 'ghi', 'Gohir.A07G210100' => 'ghi', 'Gohir.A07G210200' => 'ghi', 'Gohir.A08G061100' => 'ghi', 'Gohir.A09G223000' => 'ghi', 'Gohir.A09G223100' => 'ghi', 'Gohir.A10G113900' => 'ghi', 'Gohir.A10G114000' => 'ghi', 'Gohir.D02G042300' => 'ghi', 'Gohir.D07G216100' => 'ghi', 'Gohir.D07G216200' => 'ghi', 'Gohir.D08G070400' => 'ghi', 'Gohir.D09G225000' => 'ghi', 'Gohir.D09G225100' => 'ghi', 'Gohir.D10G152300' => 'ghi', 'Gohir.D10G153200' => 'ghi', 'Gohir.D11G133701' => 'ghi', 'Gorai.004G074100' => 'gra', 'Gorai.005G046800' => 'gra', 'Gorai.006G246500' => 'gra', 'Gorai.006G246600' => 'gra', 'Gorai.007G142900' => 'gra', 'Gorai.011G171000' => 'gra', 'Gorai.011G171100' => 'gra', 'Gorai.013G104300' => 'gra', 'Gorai.013G104400' => 'gra', 'GSVIVG01000754001' => 'vvi', 'GSVIVG01000756001' => 'vvi', 'GSVIVG01010903001' => 'vvi', 'GSVIVG01017623001' => 'vvi', 'GSVIVG01018113001' => 'vvi', 'GSVIVG01018116001' => 'vvi', 'GSVIVG01018118001' => 'vvi', 'HanXRQChr03g0076211' => 'han', 'HanXRQChr03g0092431' => 'han', 'HanXRQChr03g0092441' => 'han', 'HanXRQChr03g0092591' => 'han', 'HanXRQChr03g0092671' => 'han', 'HanXRQChr03g0092681' => 'han', 'HanXRQChr03g0092691' => 'han', 'HanXRQChr03g0092701' => 'han', 'HanXRQChr03g0092721' => 'han', 'HanXRQChr03g0092731' => 'han', 'HanXRQChr04g0113681' => 'han', 'HanXRQChr10g0281371' => 'han', 'HanXRQChr11g0337141' => 'han', 'HanXRQChr13g0424521' => 'han', 'HanXRQChr13g0424531' => 'han', 'HanXRQChr13g0424541' => 'han', 'HanXRQChr16g0498221' => 'han', 'Haze_04377' => 'cav', 'Haze_11298' => 'cav', 'Haze_24547' => 'cav', 'Haze_24550' => 'cav', 'Haze_26587' => 'cav', 'Hma1.2p1_0650F.1_g195410' => 'hma', 'Hma1.2p1_0893F.1_g233470' => 'hma', 'HPP92_006508' => 'vpl', 'HPP92_024780' => 'vpl', 'Hund02688' => 'sun', 'Hund09380' => 'sun', 'Hund09381' => 'sun', 'Hund09832' => 'sun', 'Hund09833' => 'sun', 'Hund11351' => 'sun', 'Hund11513' => 'sun', 'Lalb_Chr06g0162591' => 'lal', 'Lalb_Chr06g0162601' => 'lal', 'Lalb_Chr06g0169321' => 'lal', 'Lalb_Chr09g0330951' => 'lal', 'Lalb_Chr16g0387631' => 'lal', 'Lalb_Chr21g0306241' => 'lal', 'Lalb_Chr25g0290051' => 'lal', 'Lalb_Chr25g0290061' => 'lal', 'Lalb_Chr25g0290071' => 'lal', 'Lj1g0003876' => 'lja', 'Lj1P1207T36' => 'lonja', 'Lj2C1156G12' => 'lonja', 'Lj3A793G39' => 'lonja', 'Lj3C580G2' => 'lonja', 'Lj3C780G2' => 'lonja', 'Lj3C780T4' => 'lonja', 'Lj3C793G9' => 'lonja', 'Lj4g0012960' => 'lja', 'Lj5g0021252' => 'lja', 'Lj5g0021484' => 'lja', 'Lj5g0024528' => 'lja', 'Lj6A399T12' => 'lonja', 'Lj6A656G65' => 'lonja', 'Lsat_1_v5_gn_3_125500' => 'lsa', 'Lsat_1_v5_gn_3_125540' => 'lsa', 'Lsat_1_v5_gn_5_72701' => 'lsa', 'Lsat_1_v5_gn_8_91560' => 'lsa', 'Lsat_1_v5_gn_9_9640' => 'lsa', 'Manes.01G200600' => 'mes', 'Manes.01G200700' => 'mes', 'Manes.03G168900' => 'mes', 'Manes.03G169000' => 'mes', 'Manes.05G085801' => 'mes', 'Manes.05G086200' => 'mes', 'Manes.15G036700' => 'mes', 'Manes.15G036900' => 'mes', 'Mapoly0004s0172' => 'mpo', 'Mapoly0023s0001' => 'mpo', 'Mapoly0142s0012' => 'mpo', 'MBI01_g32854_MAGBIO' => 'mbi', 'MBI11_g24427_MAGBIO' => 'mbi', 'MBI11_g47319_MAGBIO' => 'mbi', 'MCO01G433' => 'mco', 'MD00G1187800' => 'mdo', 'MD04G1226500' => 'mdo', 'MD05G1203900' => 'mdo', 'MD10G1191100' => 'mdo', 'MD12G1243500' => 'mdo', 'MD13G1207000' => 'mdo', 'MD13G1207100' => 'mdo', 'MD16G1208600' => 'mdo', 'Medtr1g050352' => 'mtr', 'Medtr1g070385' => 'mtr', 'Medtr1g070450' => 'mtr', 'Medtr1g075200' => 'mtr', 'Medtr1g075250' => 'mtr', 'Medtr1g075260' => 'mtr', 'Medtr1g475250' => 'mtr', 'Medtr4g075450' => 'mtr', 'Medtr7g096300' => 'mtr', 'Medtr8g105110' => 'mtr', 'MELO3C006470.2' => 'cme', 'MELO3C006471.2' => 'cme', 'MELO3C020772.2' => 'cme', 'MELO3C026780.2' => 'cme', 'MELO3C026781.2' => 'cme', 'Migut.D00390' => 'egut', 'Migut.G00435' => 'egut', 'Migut.G00436' => 'egut', 'Migut.G00718' => 'egut', 'MSTRG.21891' => 'ama', 'MSTRG.26910' => 'ama', 'MSTRG.4099' => 'ama', 'MSTRG.9925' => 'ama', 'Nitab4.5_0000165g0010' => 'nta', 'Nitab4.5_0000209g0180' => 'nta', 'Nitab4.5_0000244g0440' => 'nta', 'Nitab4.5_0000525g0220' => 'nta', 'Nitab4.5_0001597g0020' => 'nta', 'Nitab4.5_0001878g0040' => 'nta', 'Nitab4.5_0001878g0060' => 'nta', 'Nitab4.5_0002838g0100' => 'nta', 'Nitab4.5_0002838g0120' => 'nta', 'Nitab4.5_0004798g0030' => 'nta', 'Nitab4.5_0005420g0010' => 'nta', 'Nitab4.5_0005507g0010' => 'nta', 'Nitab4.5_0005574g0020' => 'nta', 'Nitab4.5_0005838g0010' => 'nta', 'Nitab4.5_0010580g0020' => 'nta', 'Nn1g02599' => 'nnu', 'Nn1g02608' => 'nnu', 'Nn3g17742' => 'nnu', 'Nn3g19534' => 'nnu', 'Nn3g19535' => 'nnu', 'Oeu008790.1' => 'oeu', 'Oeu008792.1' => 'oeu', 'Oeu032590.1' => 'oeu', 'Oeu035349.1' => 'oeu', 'Oeu049791.1' => 'oeu', 'Os01g0774500' => 'osa', 'Os03g0628800' => 'osa', 'Os03g0798600' => 'osa', 'Os05g0508800' => 'osa', 'Peaxi162Scf00036g02018' => 'pax', 'Peaxi162Scf00578g00032' => 'pax', 'Peaxi162Scf00578g00317' => 'pax', 'Peaxi162Scf00785g00114' => 'pax', 'Peaxi162Scf00813g00119' => 'pax', 'Peaxi162Scf00906g00227' => 'pax', 'PGR004G0875' => 'pgr', 'PGR004G2424' => 'pgr', 'PGR031G1239' => 'pgr', 'PGR031G2474' => 'pgr', 'PGR044G0423' => 'pgr', 'PGSC0003DMG400001128' => 'stu', 'PGSC0003DMG400007336' => 'stu', 'PGSC0003DMG400016318' => 'stu', 'PGSC0003DMG400016319' => 'stu', 'PGSC0003DMG400018074' => 'stu', 'Phvul.001G157700' => 'pvu', 'Phvul.002G148550' => 'pvu', 'Phvul.002G320200' => 'pvu', 'Phvul.003G089200' => 'pvu', 'Phvul.007G126000' => 'pvu', 'Phvul.007G126100' => 'pvu', 'Phvul.007G178000' => 'pvu', 'Phvul.007G178200' => 'pvu', 'Potri.002G043000' => 'ptr', 'Potri.002G043200' => 'ptr', 'Potri.003G123750' => 'ptr', 'Potri.005G055401' => 'ptr', 'Potri.005G219700' => 'ptr', 'Potri.005G220000' => 'ptr', 'Potri.008G161901' => 'ptr', 'Potri.008G162000' => 'ptr', 'Potri.008G162400' => 'ptr', 'Potri.010G076900' => 'ptr', 'Pp3c12_9180' => 'ppa', 'Pp3c13_19770' => 'ppa', 'Pp3c14_22950' => 'ppa', 'Pp3c16_12160' => 'ppa', 'Pp3c27_7820' => 'ppa', 'Pp3c2_3490' => 'ppa', 'Pp3c3_23700' => 'ppa', 'Pp3c3_36520' => 'ppa', 'Pp3c4_15250' => 'ppa', 'PRCOL_00007002' => 'pco', 'Prupe.1G030600' => 'ppe', 'Prupe.1G030700' => 'ppe', 'Prupe.6G345200' => 'ppe', 'Prupe.8G230300' => 'ppe', 'Prupe.8G230500' => 'ppe', 'Psat3g059600' => 'psa', 'Psat5g200920' => 'psa', 'Psat6g056440' => 'psa', 'Psat6g057360' => 'psa', 'Psat6g134120' => 'psa', 'Psat6g134160' => 'psa', 'Psat7g008640' => 'psa', 'Psat7g185240' => 'psa', 'PSO017G1330' => 'pso', 'PSO063G6097' => 'pso', 'PSO170G0835' => 'pso', 'PSO170G2499' => 'pso', 'PSO210G5058' => 'pso', 'PSO210G6154' => 'pso', 'PSO585G0031' => 'pso', 'PSO832G0264' => 'pso', 'PSO832G4288' => 'pso', 'QL03p027355' => 'qlo', 'QL03p027430' => 'qlo', 'QL04p081380' => 'qlo', 'QL06p015642' => 'qlo', 'QL06p015650' => 'qlo', 'QL06p015686' => 'qlo', 'QL12p042927' => 'qlo', 'QL93p1863_0035' => 'qlo', 'RcHm_v2.0_Chr3g0450581' => 'rch', 'RcHm_v2.0_Chr4g0390371' => 'rch', 'RcHm_v2.0_Chr4g0390381' => 'rch', 'RcHm_v2.0_Chr4g0390491' => 'rch', 'RcHm_v2.0_Chr4g0390501' => 'rch', 'RcHm_v2.0_Chr6g0289231' => 'rch', 'Rhsim04G0190400' => 'rsi', 'Rhsim04G0190500' => 'rsi', 'Rhsim04G0190600' => 'rsi', 'Rhsim13G0031400' => 'rsi', 'Rhsim13G0165600' => 'rsi', 'RhsimUnG0114600' => 'rsi', 'RhsimUnG0114700' => 'rsi', 'Sabra02G0034800' => 'sbr', 'Sabra02G0035100' => 'sbr', 'Sabra05G0168600' => 'sbr', 'Sabra05G0168800' => 'sbr', 'Sabra08G0123700' => 'sbr', 'Sabra10G0031900' => 'sbr', 'Sabra13G0039000' => 'sbr', 'SalBow2G0782' => 'sbo', 'SalBow2G1403' => 'sbo', 'SalBow4G0074' => 'sbo', 'SalBow4G2635' => 'sbo', 'SalBow5G3010' => 'sbo', 'Sc05g0000870' => 'sci', 'Sc05g0000890' => 'sci', 'Sc13g0005000' => 'sci', 'Sc13g0005030' => 'sci', 'Sc19g0003790' => 'sci', 'Sc19g0003800' => 'sci', 'Sed0003467' => 'sed', 'Sed0009355' => 'sed', 'Sed0009894' => 'sed', 'Sed0011972' => 'sed', 'Sed0021483' => 'sed', 'Sed0021750' => 'sed', 'Sed0026279' => 'sed', 'SEGI_05312' => 'sgi', 'SEGI_10112' => 'sgi', 'SEGI_15835' => 'sgi', 'SEGI_30386' => 'sgi', 'SEGI_34122' => 'sgi', 'SEGI_35063' => 'sgi', 'SGA_v2.0_scaffold101G29794' => 'sas', 'SGA_v2.0_scaffold1G00573' => 'sas', 'SGA_v2.0_scaffold79G25637' => 'sas', 'SGA_v2.0_scaffold88G27283' => 'sas', 'SGA_v2.0_scaffold88G27285' => 'sas', 'SGA_v2.0_scaffold88G27331' => 'sas', 'SHI09937' => 'shi', 'SMO119G0302' => 'smo', 'SMO137G0231' => 'smo', 'SMO367G1151' => 'smo', 'Solyc02g082000.3' => 'sly', 'Solyc06g031670.3' => 'sly', 'Solyc06g053810.3' => 'sly', 'Solyc07g025457.1' => 'sly', 'Solyc08g059740.1' => 'sly', 'Solyc08g059750.3' => 'sly', 'Solyc09g083370.3' => 'sly', 'Solyc12g038950.3' => 'sly', 'Sopen02g026630' => 'spe', 'Sopen06g018930' => 'spe', 'Sopen06g018940' => 'spe', 'Sopen08g009460' => 'spe', 'Sopen09g032290' => 'spe', 'Sp1g03080' => 'spa', 'Sp1g03090' => 'spa', 'Sp1g05480' => 'spa', 'Sp2g07860' => 'spa', 'Sp2g08430' => 'spa', 'Sp2g08440' => 'spa', 'Sp2g26200' => 'spa', 'Sp4g13170' => 'spa', 'Sp6g33840' => 'spa', 'SpUn1204_0010' => 'spa', 'TAR365G0908' => 'tar', 'TAR381G1270' => 'tar', 'TAR381G1651' => 'tar', 'TAR625G1131' => 'tar', 'TAR633G0962' => 'tar', 'TAR633G1729' => 'tar', 'TAR633G1864' => 'tar', 'TAR636G0221' => 'tar', 'TAR636G0314' => 'tar', 'TAR636G3202' => 'tar', 'THA.LOC104800805' => 'tha', 'THA.LOC104801096' => 'tha', 'THA.LOC104801555' => 'tha', 'THA.LOC104808491' => 'tha', 'THA.LOC104808595' => 'tha', 'THA.LOC104815985' => 'tha', 'THA.LOC104822250' => 'tha', 'THA.LOC104826071' => 'tha', 'Thecc.01G265200' => 'tca', 'Thecc.01G265300' => 'tca', 'Thecc.01G265700' => 'tca', 'Thecc.03G109100' => 'tca', 'Thecc.04G245900' => 'tca', 'Thecc.04G246000' => 'tca', 'Thhalv10003334m.g' => 'esa', 'Thhalv10005508m.g' => 'esa', 'Thhalv10005643m.g' => 'esa', 'Thhalv10007316m.g' => 'esa', 'Thhalv10009006m.g' => 'esa', 'Thhalv10009309m.g' => 'esa', 'Thhalv10014917m.g' => 'esa', 'Thhalv10014919m.g' => 'esa', 'Thhalv10015393m.g' => 'esa', 'Thhalv10016515m.g' => 'esa', 'Thhalv10029242m.g' => 'esa', 'TPR.G16654' => 'tpr', 'TPR.G20589' => 'tpr', 'TPR.G23029' => 'tpr', 'TPR.G27731' => 'tpr', 'TPR.G28889' => 'tpr', 'TPR.G28899' => 'tpr', 'TPR.G30846' => 'tpr', 'TPR.G5452' => 'tpr', 'TPR.G5713' => 'tpr', 'TPR.G9046' => 'tpr', 'TPR.G9061' => 'tpr', 'TWI09G1075' => 'twi', 'TWI12G0806' => 'twi', 'TWI18G0108' => 'twi', 'TWI53G1361' => 'twi', 'TWI73G0185' => 'twi', 'TWI73G0427' => 'twi', 'unitig_37.g12001' => 'ugi', 'unitig_747.g21660' => 'ugi', 'unitig_748.g7232' => 'ugi', 'unitig_748.g7315' => 'ugi', 'unitig_85.g27262' => 'ugi', 'unitig_92.g28220' => 'ugi', 'vmacro02632' => 'vma', 'vmacro08410' => 'vma', 'vmacro08411' => 'vma', 'vmacro15407' => 'vma', 'VMungo0251G3619' => 'vmu', 'VMungo0720G1204' => 'vmu', 'VMungo0720G1918' => 'vmu', 'VMungo0720G2387' => 'vmu', 'VMungo0720G2961' => 'vmu', 'VMungo1215G2154' => 'vmu', 'VMungo1383G2411' => 'vmu', 'Zm00001eb051130' => 'zma', 'Zm00001eb116830' => 'zma', 'Zm00001eb116850' => 'zma', 'Zm00001eb151740' => 'zma', 'Zm00001eb292360' => 'zma', 'Zm00001eb301640' => 'zma' ) $gf_id = 'HOM05D000856' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000856' ) $data_identifier = 'HOM05D000856' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 13, 'ath' => (int) 10, 'atr' => (int) 1, 'acertr' => (int) 8, 'cqu' => (int) 6, 'bca' => (int) 21, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 11, 'car' => (int) 9, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 8, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 5, 'fan' => (int) 16, 'fve' => (int) 6, 'gma' => (int) 11, 'ghi' => (int) 19, 'gra' => (int) 9, 'vvi' => (int) 7, 'han' => (int) 17, 'cav' => (int) 5, 'hma' => (int) 2, 'vpl' => (int) 2, 'sun' => (int) 7, 'lal' => (int) 9, 'lja' => (int) 5, 'lonja' => (int) 9, 'lsa' => (int) 5, 'mes' => (int) 8, 'mpo' => (int) 3, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 10, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 15, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 9, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 9, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 6, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 5, 'spa' => (int) 10, 'tar' => (int) 10, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 11, 'tpr' => (int) 11, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 4, 'vmu' => (int) 7, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb301640' $species_info = array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ) $local_species = 'tpr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000856', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p00010' => 'bna', 'A03p04160' => 'bna', 'A03p17160' => 'bna', 'A04p23370' => 'bna', 'A05p14860' => 'bna', 'A08p37020' => 'bna', 'A09p08050' => 'bna', 'A09p66800' => 'bna', 'A09p67940' => 'bna', 'A10p02680' => 'bna', 'A10p05320' => 'bna', 'Aa31LG1G20560' => 'aar', 'Aa31LG1G20610' => 'aar', 'Aa31LG1G7810' => 'aar', 'Aa31LG5G3590' => 'aar', 'Aa31LG5G6140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3819' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4683' => 'aag', 'Actinidia04480' => 'ach', 'Actinidia05466' => 'ach', 'Actinidia08445' => 'ach', 'Actinidia21170' => 'ach', 'Actinidia24812' => 'ach', 'Actinidia24951' => 'ach', 'Actinidia40088' => 'ach', 'Ah.02g111660' => 'amhyb', 'Ah.11g048900' => 'amhyb', 'Ah.11g049910' => 'amhyb', 'AL1G13870' => 'aly', 'AL1G13880' => 'aly', 'AL1G16760' => 'aly', 'AL390U10020' => 'aly', 'AL4G25520' => 'aly', 'AL6G19890' => 'aly', 'AL6G19900' => 'aly', 'AL6G19910' => 'aly', 'AL8G40100' => 'aly', 'Aqoxy2G03562' => 'aox', 'Aqoxy5G00316' => 'aox', 'Aqoxy5G00926' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1628KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1H403S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2FU6SJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.882I6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8YRY2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YN1SN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AF70II' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZA8L1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F916KL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHRD8H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KTZ8QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S22EMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8M29T' => 'arhy', 'AT1G04270' => 'ath', 'AT1G04280' => 'ath', 'AT1G06750' => 'ath', 'AT1G33850' => 'ath', 'AT2G30630' => 'ath', 'AT5G09490' => 'ath', 'AT5G09500' => 'ath', 'AT5G09510' => 'ath', 'AT5G43640' => 'ath', 'AT5G63070' => 'ath', 'ATR0605G315' => 'atr', 'Atru.chr11.175' => 'acertr', 'Atru.chr11.653' => 'acertr', 'Atru.chr3.1616' => 'acertr', 'Atru.chr4.2230' => 'acertr', 'Atru.chr4.2232' => 'acertr', 'Atru.chr5.1598' => 'acertr', 'Atru.chr5.1600' => 'acertr', 'Atru.chr5.2188' => 'acertr', 'AUR62008326' => 'cqu', 'AUR62011922' => 'cqu', 'AUR62011924' => 'cqu', 'AUR62021771' => 'cqu', 'AUR62032237' => 'cqu', 'AUR62032240' => 'cqu', 'BcaB01g05572' => 'bca', 'BcaB02g10337' => 'bca', 'BcaB04g19944' => 'bca', 'BcaB05g21548' => 'bca', 'BcaB05g21549' => 'bca', 'BcaB05g23227' => 'bca', 'BcaB06g26256' => 'bca', 'BcaB06g26257' => 'bca', 'BcaB06g28379' => 'bca', 'BcaC02g11159' => 'bca', 'BcaC03g13258' => 'bca', 'BcaC03g13259' => 'bca', 'BcaC05g24456' => 'bca', 'BcaC05g24457' => 'bca', 'BcaC07g36922' => 'bca', 'BcaC07g36923' => 'bca', 'BcaC07g42050' => 'bca', 'BcaC07g42176' => 'bca', 'BcaC07g42195' => 'bca', 'BcaC07g42196' => 'bca', 'BcaNung06674' => 'bca', 'BolC2t06351H' => 'bol', 'BolC2t06352H' => 'bol', 'BolC3t12993H' => 'bol', 'BolC4t23525H' => 'bol', 'BolC4t27475H' => 'bol', 'BolC5t29025H' => 'bol', 'BolC5t29026H' => 'bol', 'BolC8t46898H' => 'bol', 'BolC8t46899H' => 'bol', 'BolC8t52630H' => 'bol', 'BolC8t52765H' => 'bol', 'BolC9t53824H' => 'bol', 'BraA03t09760Z' => 'bra', 'BraA03t10990Z' => 'bra', 'BraA05t20413Z' => 'bra', 'BraA08t35602Z' => 'bra', 'BraA09t36458Z' => 'bra', 'BraA09t42018Z' => 'bra', 'BraA09t42129Z' => 'bra', 'BraA10t42536Z' => 'bra', 'BraA10t42537Z' => 'bra', 'C01p10690' => 'bna', 'C02p03890' => 'bna', 'C02p03900' => 'bna', 'C03p04620' => 'bna', 'C04p19870' => 'bna', 'C04p59670' => 'bna', 'C05p02460' => 'bna', 'C05p02470' => 'bna', 'C08p00980' => 'bna', 'C08p00990' => 'bna', 'C08p51030' => 'bna', 'C08p52360' => 'bna', 'C09p09120' => 'bna', 'CAN.G19.15' => 'can', 'CAN.G251.10' => 'can', 'CAN.G251.9' => 'can', 'CAN.G398.24' => 'can', 'CAN.G410.32' => 'can', 'CAN.G881.2' => 'can', 'CANSAT01G3025' => 'cansat', 'CANSAT78G1211' => 'cansat', 'CANSAT78G1218' => 'cansat', 'CANSAT78G1521' => 'cansat', 'CANSAT78G1670' => 'cansat', 'CARHR003600' => 'chi', 'CARHR003610' => 'chi', 'CARHR006290' => 'chi', 'CARHR006430' => 'chi', 'CARHR124110' => 'chi', 'CARHR203870' => 'chi', 'CARHR203880' => 'chi', 'CARHR203890' => 'chi', 'CARHR276880' => 'chi', 'Carub.0001s0346' => 'cru', 'Carub.0001s0347' => 'cru', 'Carub.0001s0607' => 'cru', 'Carub.0003s2768' => 'cru', 'Carub.0003s2769' => 'cru', 'Carub.0004s1178' => 'cru', 'Carub.0006s0806' => 'cru', 'Carub.0006s0807' => 'cru', 'Carub.0006s0808' => 'cru', 'Carub.0008s0501' => 'cru', 'Carub.0008s2379' => 'cru', 'Ca_08655_v3' => 'car', 'Ca_08922_v3' => 'car', 'Ca_08923_v3' => 'car', 'Ca_09119_v3' => 'car', 'Ca_09703_v3' => 'car', 'Ca_09705_v3' => 'car', 'Ca_09835_v3' => 'car', 'Ca_26403_v3' => 'car', 'Ca_30719_v3' => 'car', 'CBR_g17958' => 'cbr', 'CBR_g40516' => 'cbr', 'Cc00_g05350' => 'ccan', 'Cc01_g18690' => 'ccan', 'Cc03_g04830' => 'ccan', 'Cc03_g04850' => 'ccan', 'CDE02G4469' => 'cde', 'CDE06G0883' => 'cde', 'CDE06G1295' => 'cde', 'CDE06G1390' => 'cde', 'CDE07G0584' => 'cde', 'CDE07G1084' => 'cde', 'CDE08G1259' => 'cde', 'Cfa002341' => 'cfa', 'Cfa024337' => 'cfa', 'Ciclev10004749m.g' => 'ccl', 'Ciclev10006127m.g' => 'ccl', 'Ciclev10019720m.g' => 'ccl', 'Ciclev10022652m.g' => 'ccl', 'CiPaw.01G190400' => 'cil', 'CiPaw.01G190500' => 'cil', 'CiPaw.02G116400' => 'cil', 'CiPaw.02G116500' => 'cil', 'CiPaw.04G183000' => 'cil', 'CiPaw.04G183300' => 'cil', 'ClCG05G004610' => 'cla', 'ClCG05G004620' => 'cla', 'ClCG06G006730' => 'cla', 'ClCG06G006740' => 'cla', 'ClCG11G003690' => 'cla', 'COL.COLO4_08276' => 'col', 'COL.COLO4_08277' => 'col', 'COL.COLO4_15787' => 'col', 'COL.COLO4_15789' => 'col', 'Cpa.g.c44815' => 'cpa', 'Cpa.g.sc52.144' => 'cpa', 'Cpa.g.sc58.46' => 'cpa', 'Cpa.g.sc58.47' => 'cpa', 'Cre08.g360900' => 'cre', 'CsaV3_2G013030' => 'csa', 'CsaV3_2G013050' => 'csa', 'CsaV3_2G015620' => 'csa', 'CsaV3_3G012590' => 'csa', 'CsaV3_3G012600' => 'csa', 'CSS0001641' => 'camsi', 'CSS0008310' => 'camsi', 'CSS0013011' => 'camsi', 'CSS0017147' => 'camsi', 'CSS0022970' => 'camsi', 'CSS0025655' => 'camsi', 'CSS0028665' => 'camsi', 'CSS0029117' => 'camsi', 'CSS0032024' => 'camsi', 'CSS0039681' => 'camsi', 'CSS0046516' => 'camsi', 'CSS0050307' => 'camsi', 'DCAR_005871' => 'dca', 'DCAR_007342' => 'dca', 'DCAR_024228' => 'dca', 'DCAR_027277' => 'dca', 'DCAR_030718' => 'dca', 'Dinv20287' => 'din', 'Dinv22461' => 'din', 'Dinv22464' => 'din', 'Dinv29912' => 'din', 'Dinv29913' => 'din', 'Dinv34580' => 'din', 'Dinv34582' => 'din', 'Dinv44632' => 'din', 'Duzib052G0266' => 'dzi', 'Duzib133G0907' => 'dzi', 'Duzib133G1034' => 'dzi', 'Duzib138G0207' => 'dzi', 'Duzib138G0491' => 'dzi', 'Duzib151G0812' => 'dzi', 'Duzib151G1166' => 'dzi', 'Duzib168G0192' => 'dzi', 'Duzib211G0077' => 'dzi', 'Duzib212G0429' => 'dzi', 'Duzib212G0472' => 'dzi', 'ECA233G2617' => 'eca', 'ECA236G4188' => 'eca', 'ECA240G0936' => 'eca', 'ECA240G1129' => 'eca', 'ECA247G0623' => 'eca', 'EL10Ac5g10451' => 'bvu', 'EL10Ac5g10453' => 'bvu', 'EL10Ac5g10894' => 'bvu', 'Eucgr.H00192' => 'egr', 'Eucgr.H00193' => 'egr', 'Eucgr.H00194' => 'egr', 'Eucgr.J01562' => 'egr', 'Eucgr.K03301' => 'egr', 'FAN02G0632' => 'fan', 'FAN05G5378' => 'fan', 'FAN09G3247' => 'fan', 'FAN12G0435' => 'fan', 'FAN12G2426' => 'fan', 'FAN14G1707' => 'fan', 'FAN14G4725' => 'fan', 'FAN15G2071' => 'fan', 'FAN17G3065' => 'fan', 'FAN19G1376' => 'fan', 'FAN20G0354' => 'fan', 'FAN20G2429' => 'fan', 'FAN20G2658' => 'fan', 'FAN24G2343' => 'fan', 'FAN27G2362' => 'fan', 'FAN28G1765' => 'fan', 'FvH4_1g16020' => 'fve', 'FvH4_2g04890' => 'fve', 'FvH4_2g22270' => 'fve', 'FvH4_4g02630' => 'fve', 'FvH4_4g02640' => 'fve', 'FvH4_6g02650' => 'fve', 'Glyma.02G140600' => 'gma', 'Glyma.03G159900' => 'gma', 'Glyma.05G234800' => 'gma', 'Glyma.07G269600' => 'gma', 'Glyma.08G042300' => 'gma', 'Glyma.10G033500' => 'gma', 'Glyma.10G185200' => 'gma', 'Glyma.17G004300' => 'gma', 'Glyma.19G161900' => 'gma', 'Glyma.20G205100' => 'gma', 'Glyma.20G205200' => 'gma', 'Gohir.A01G139101' => 'ghi', 'Gohir.A02G035600' => 'ghi', 'Gohir.A02G117901' => 'ghi', 'Gohir.A07G210100' => 'ghi', 'Gohir.A07G210200' => 'ghi', 'Gohir.A08G061100' => 'ghi', 'Gohir.A09G223000' => 'ghi', 'Gohir.A09G223100' => 'ghi', 'Gohir.A10G113900' => 'ghi', 'Gohir.A10G114000' => 'ghi', 'Gohir.D02G042300' => 'ghi', 'Gohir.D07G216100' => 'ghi', 'Gohir.D07G216200' => 'ghi', 'Gohir.D08G070400' => 'ghi', 'Gohir.D09G225000' => 'ghi', 'Gohir.D09G225100' => 'ghi', 'Gohir.D10G152300' => 'ghi', 'Gohir.D10G153200' => 'ghi', 'Gohir.D11G133701' => 'ghi', 'Gorai.004G074100' => 'gra', 'Gorai.005G046800' => 'gra', 'Gorai.006G246500' => 'gra', 'Gorai.006G246600' => 'gra', 'Gorai.007G142900' => 'gra', 'Gorai.011G171000' => 'gra', 'Gorai.011G171100' => 'gra', 'Gorai.013G104300' => 'gra', 'Gorai.013G104400' => 'gra', 'GSVIVG01000754001' => 'vvi', 'GSVIVG01000756001' => 'vvi', 'GSVIVG01010903001' => 'vvi', 'GSVIVG01017623001' => 'vvi', 'GSVIVG01018113001' => 'vvi', 'GSVIVG01018116001' => 'vvi', 'GSVIVG01018118001' => 'vvi', 'HanXRQChr03g0076211' => 'han', 'HanXRQChr03g0092431' => 'han', 'HanXRQChr03g0092441' => 'han', 'HanXRQChr03g0092591' => 'han', 'HanXRQChr03g0092671' => 'han', 'HanXRQChr03g0092681' => 'han', 'HanXRQChr03g0092691' => 'han', 'HanXRQChr03g0092701' => 'han', 'HanXRQChr03g0092721' => 'han', 'HanXRQChr03g0092731' => 'han', 'HanXRQChr04g0113681' => 'han', 'HanXRQChr10g0281371' => 'han', 'HanXRQChr11g0337141' => 'han', 'HanXRQChr13g0424521' => 'han', 'HanXRQChr13g0424531' => 'han', 'HanXRQChr13g0424541' => 'han', 'HanXRQChr16g0498221' => 'han', 'Haze_04377' => 'cav', 'Haze_11298' => 'cav', 'Haze_24547' => 'cav', 'Haze_24550' => 'cav', 'Haze_26587' => 'cav', 'Hma1.2p1_0650F.1_g195410' => 'hma', 'Hma1.2p1_0893F.1_g233470' => 'hma', 'HPP92_006508' => 'vpl', 'HPP92_024780' => 'vpl', 'Hund02688' => 'sun', 'Hund09380' => 'sun', 'Hund09381' => 'sun', 'Hund09832' => 'sun', 'Hund09833' => 'sun', 'Hund11351' => 'sun', 'Hund11513' => 'sun', 'Lalb_Chr06g0162591' => 'lal', 'Lalb_Chr06g0162601' => 'lal', 'Lalb_Chr06g0169321' => 'lal', 'Lalb_Chr09g0330951' => 'lal', 'Lalb_Chr16g0387631' => 'lal', 'Lalb_Chr21g0306241' => 'lal', 'Lalb_Chr25g0290051' => 'lal', 'Lalb_Chr25g0290061' => 'lal', 'Lalb_Chr25g0290071' => 'lal', 'Lj1g0003876' => 'lja', 'Lj1P1207T36' => 'lonja', 'Lj2C1156G12' => 'lonja', 'Lj3A793G39' => 'lonja', 'Lj3C580G2' => 'lonja', 'Lj3C780G2' => 'lonja', 'Lj3C780T4' => 'lonja', 'Lj3C793G9' => 'lonja', 'Lj4g0012960' => 'lja', 'Lj5g0021252' => 'lja', 'Lj5g0021484' => 'lja', 'Lj5g0024528' => 'lja', 'Lj6A399T12' => 'lonja', 'Lj6A656G65' => 'lonja', 'Lsat_1_v5_gn_3_125500' => 'lsa', 'Lsat_1_v5_gn_3_125540' => 'lsa', 'Lsat_1_v5_gn_5_72701' => 'lsa', 'Lsat_1_v5_gn_8_91560' => 'lsa', 'Lsat_1_v5_gn_9_9640' => 'lsa', 'Manes.01G200600' => 'mes', 'Manes.01G200700' => 'mes', 'Manes.03G168900' => 'mes', 'Manes.03G169000' => 'mes', 'Manes.05G085801' => 'mes', 'Manes.05G086200' => 'mes', 'Manes.15G036700' => 'mes', 'Manes.15G036900' => 'mes', 'Mapoly0004s0172' => 'mpo', 'Mapoly0023s0001' => 'mpo', 'Mapoly0142s0012' => 'mpo', 'MBI01_g32854_MAGBIO' => 'mbi', 'MBI11_g24427_MAGBIO' => 'mbi', 'MBI11_g47319_MAGBIO' => 'mbi', 'MCO01G433' => 'mco', 'MD00G1187800' => 'mdo', 'MD04G1226500' => 'mdo', 'MD05G1203900' => 'mdo', 'MD10G1191100' => 'mdo', 'MD12G1243500' => 'mdo', 'MD13G1207000' => 'mdo', 'MD13G1207100' => 'mdo', 'MD16G1208600' => 'mdo', 'Medtr1g050352' => 'mtr', 'Medtr1g070385' => 'mtr', 'Medtr1g070450' => 'mtr', 'Medtr1g075200' => 'mtr', 'Medtr1g075250' => 'mtr', 'Medtr1g075260' => 'mtr', 'Medtr1g475250' => 'mtr', 'Medtr4g075450' => 'mtr', 'Medtr7g096300' => 'mtr', 'Medtr8g105110' => 'mtr', 'MELO3C006470.2' => 'cme', 'MELO3C006471.2' => 'cme', 'MELO3C020772.2' => 'cme', 'MELO3C026780.2' => 'cme', 'MELO3C026781.2' => 'cme', 'Migut.D00390' => 'egut', 'Migut.G00435' => 'egut', 'Migut.G00436' => 'egut', 'Migut.G00718' => 'egut', 'MSTRG.21891' => 'ama', 'MSTRG.26910' => 'ama', 'MSTRG.4099' => 'ama', 'MSTRG.9925' => 'ama', 'Nitab4.5_0000165g0010' => 'nta', 'Nitab4.5_0000209g0180' => 'nta', 'Nitab4.5_0000244g0440' => 'nta', 'Nitab4.5_0000525g0220' => 'nta', 'Nitab4.5_0001597g0020' => 'nta', 'Nitab4.5_0001878g0040' => 'nta', 'Nitab4.5_0001878g0060' => 'nta', 'Nitab4.5_0002838g0100' => 'nta', 'Nitab4.5_0002838g0120' => 'nta', 'Nitab4.5_0004798g0030' => 'nta', 'Nitab4.5_0005420g0010' => 'nta', 'Nitab4.5_0005507g0010' => 'nta', 'Nitab4.5_0005574g0020' => 'nta', 'Nitab4.5_0005838g0010' => 'nta', 'Nitab4.5_0010580g0020' => 'nta', 'Nn1g02599' => 'nnu', 'Nn1g02608' => 'nnu', 'Nn3g17742' => 'nnu', 'Nn3g19534' => 'nnu', 'Nn3g19535' => 'nnu', 'Oeu008790.1' => 'oeu', 'Oeu008792.1' => 'oeu', 'Oeu032590.1' => 'oeu', 'Oeu035349.1' => 'oeu', 'Oeu049791.1' => 'oeu', 'Os01g0774500' => 'osa', 'Os03g0628800' => 'osa', 'Os03g0798600' => 'osa', 'Os05g0508800' => 'osa', 'Peaxi162Scf00036g02018' => 'pax', 'Peaxi162Scf00578g00032' => 'pax', 'Peaxi162Scf00578g00317' => 'pax', 'Peaxi162Scf00785g00114' => 'pax', 'Peaxi162Scf00813g00119' => 'pax', 'Peaxi162Scf00906g00227' => 'pax', 'PGR004G0875' => 'pgr', 'PGR004G2424' => 'pgr', 'PGR031G1239' => 'pgr', 'PGR031G2474' => 'pgr', 'PGR044G0423' => 'pgr', 'PGSC0003DMG400001128' => 'stu', 'PGSC0003DMG400007336' => 'stu', 'PGSC0003DMG400016318' => 'stu', 'PGSC0003DMG400016319' => 'stu', 'PGSC0003DMG400018074' => 'stu', 'Phvul.001G157700' => 'pvu', 'Phvul.002G148550' => 'pvu', 'Phvul.002G320200' => 'pvu', 'Phvul.003G089200' => 'pvu', 'Phvul.007G126000' => 'pvu', 'Phvul.007G126100' => 'pvu', 'Phvul.007G178000' => 'pvu', 'Phvul.007G178200' => 'pvu', 'Potri.002G043000' => 'ptr', 'Potri.002G043200' => 'ptr', 'Potri.003G123750' => 'ptr', 'Potri.005G055401' => 'ptr', 'Potri.005G219700' => 'ptr', 'Potri.005G220000' => 'ptr', 'Potri.008G161901' => 'ptr', 'Potri.008G162000' => 'ptr', 'Potri.008G162400' => 'ptr', 'Potri.010G076900' => 'ptr', 'Pp3c12_9180' => 'ppa', 'Pp3c13_19770' => 'ppa', 'Pp3c14_22950' => 'ppa', 'Pp3c16_12160' => 'ppa', 'Pp3c27_7820' => 'ppa', 'Pp3c2_3490' => 'ppa', 'Pp3c3_23700' => 'ppa', 'Pp3c3_36520' => 'ppa', 'Pp3c4_15250' => 'ppa', 'PRCOL_00007002' => 'pco', 'Prupe.1G030600' => 'ppe', 'Prupe.1G030700' => 'ppe', 'Prupe.6G345200' => 'ppe', 'Prupe.8G230300' => 'ppe', 'Prupe.8G230500' => 'ppe', 'Psat3g059600' => 'psa', 'Psat5g200920' => 'psa', 'Psat6g056440' => 'psa', 'Psat6g057360' => 'psa', 'Psat6g134120' => 'psa', 'Psat6g134160' => 'psa', 'Psat7g008640' => 'psa', 'Psat7g185240' => 'psa', 'PSO017G1330' => 'pso', 'PSO063G6097' => 'pso', 'PSO170G0835' => 'pso', 'PSO170G2499' => 'pso', 'PSO210G5058' => 'pso', 'PSO210G6154' => 'pso', 'PSO585G0031' => 'pso', 'PSO832G0264' => 'pso', 'PSO832G4288' => 'pso', 'QL03p027355' => 'qlo', 'QL03p027430' => 'qlo', 'QL04p081380' => 'qlo', 'QL06p015642' => 'qlo', 'QL06p015650' => 'qlo', 'QL06p015686' => 'qlo', 'QL12p042927' => 'qlo', 'QL93p1863_0035' => 'qlo', 'RcHm_v2.0_Chr3g0450581' => 'rch', 'RcHm_v2.0_Chr4g0390371' => 'rch', 'RcHm_v2.0_Chr4g0390381' => 'rch', 'RcHm_v2.0_Chr4g0390491' => 'rch', 'RcHm_v2.0_Chr4g0390501' => 'rch', 'RcHm_v2.0_Chr6g0289231' => 'rch', 'Rhsim04G0190400' => 'rsi', 'Rhsim04G0190500' => 'rsi', 'Rhsim04G0190600' => 'rsi', 'Rhsim13G0031400' => 'rsi', 'Rhsim13G0165600' => 'rsi', 'RhsimUnG0114600' => 'rsi', 'RhsimUnG0114700' => 'rsi', 'Sabra02G0034800' => 'sbr', 'Sabra02G0035100' => 'sbr', 'Sabra05G0168600' => 'sbr', 'Sabra05G0168800' => 'sbr', 'Sabra08G0123700' => 'sbr', 'Sabra10G0031900' => 'sbr', 'Sabra13G0039000' => 'sbr', 'SalBow2G0782' => 'sbo', 'SalBow2G1403' => 'sbo', 'SalBow4G0074' => 'sbo', 'SalBow4G2635' => 'sbo', 'SalBow5G3010' => 'sbo', 'Sc05g0000870' => 'sci', 'Sc05g0000890' => 'sci', 'Sc13g0005000' => 'sci', 'Sc13g0005030' => 'sci', 'Sc19g0003790' => 'sci', 'Sc19g0003800' => 'sci', 'Sed0003467' => 'sed', 'Sed0009355' => 'sed', 'Sed0009894' => 'sed', 'Sed0011972' => 'sed', 'Sed0021483' => 'sed', 'Sed0021750' => 'sed', 'Sed0026279' => 'sed', 'SEGI_05312' => 'sgi', 'SEGI_10112' => 'sgi', 'SEGI_15835' => 'sgi', 'SEGI_30386' => 'sgi', 'SEGI_34122' => 'sgi', 'SEGI_35063' => 'sgi', 'SGA_v2.0_scaffold101G29794' => 'sas', 'SGA_v2.0_scaffold1G00573' => 'sas', 'SGA_v2.0_scaffold79G25637' => 'sas', 'SGA_v2.0_scaffold88G27283' => 'sas', 'SGA_v2.0_scaffold88G27285' => 'sas', 'SGA_v2.0_scaffold88G27331' => 'sas', 'SHI09937' => 'shi', 'SMO119G0302' => 'smo', 'SMO137G0231' => 'smo', 'SMO367G1151' => 'smo', 'Solyc02g082000.3' => 'sly', 'Solyc06g031670.3' => 'sly', 'Solyc06g053810.3' => 'sly', 'Solyc07g025457.1' => 'sly', 'Solyc08g059740.1' => 'sly', 'Solyc08g059750.3' => 'sly', 'Solyc09g083370.3' => 'sly', 'Solyc12g038950.3' => 'sly', 'Sopen02g026630' => 'spe', 'Sopen06g018930' => 'spe', 'Sopen06g018940' => 'spe', 'Sopen08g009460' => 'spe', 'Sopen09g032290' => 'spe', 'Sp1g03080' => 'spa', 'Sp1g03090' => 'spa', 'Sp1g05480' => 'spa', 'Sp2g07860' => 'spa', 'Sp2g08430' => 'spa', 'Sp2g08440' => 'spa', 'Sp2g26200' => 'spa', 'Sp4g13170' => 'spa', 'Sp6g33840' => 'spa', 'SpUn1204_0010' => 'spa', 'TAR365G0908' => 'tar', 'TAR381G1270' => 'tar', 'TAR381G1651' => 'tar', 'TAR625G1131' => 'tar', 'TAR633G0962' => 'tar', 'TAR633G1729' => 'tar', 'TAR633G1864' => 'tar', 'TAR636G0221' => 'tar', 'TAR636G0314' => 'tar', 'TAR636G3202' => 'tar', 'THA.LOC104800805' => 'tha', 'THA.LOC104801096' => 'tha', 'THA.LOC104801555' => 'tha', 'THA.LOC104808491' => 'tha', 'THA.LOC104808595' => 'tha', 'THA.LOC104815985' => 'tha', 'THA.LOC104822250' => 'tha', 'THA.LOC104826071' => 'tha', 'Thecc.01G265200' => 'tca', 'Thecc.01G265300' => 'tca', 'Thecc.01G265700' => 'tca', 'Thecc.03G109100' => 'tca', 'Thecc.04G245900' => 'tca', 'Thecc.04G246000' => 'tca', 'Thhalv10003334m.g' => 'esa', 'Thhalv10005508m.g' => 'esa', 'Thhalv10005643m.g' => 'esa', 'Thhalv10007316m.g' => 'esa', 'Thhalv10009006m.g' => 'esa', 'Thhalv10009309m.g' => 'esa', 'Thhalv10014917m.g' => 'esa', 'Thhalv10014919m.g' => 'esa', 'Thhalv10015393m.g' => 'esa', 'Thhalv10016515m.g' => 'esa', 'Thhalv10029242m.g' => 'esa', 'TPR.G16654' => 'tpr', 'TPR.G20589' => 'tpr', 'TPR.G23029' => 'tpr', 'TPR.G27731' => 'tpr', 'TPR.G28889' => 'tpr', 'TPR.G28899' => 'tpr', 'TPR.G30846' => 'tpr', 'TPR.G5452' => 'tpr', 'TPR.G5713' => 'tpr', 'TPR.G9046' => 'tpr', 'TPR.G9061' => 'tpr', 'TWI09G1075' => 'twi', 'TWI12G0806' => 'twi', 'TWI18G0108' => 'twi', 'TWI53G1361' => 'twi', 'TWI73G0185' => 'twi', 'TWI73G0427' => 'twi', 'unitig_37.g12001' => 'ugi', 'unitig_747.g21660' => 'ugi', 'unitig_748.g7232' => 'ugi', 'unitig_748.g7315' => 'ugi', 'unitig_85.g27262' => 'ugi', 'unitig_92.g28220' => 'ugi', 'vmacro02632' => 'vma', 'vmacro08410' => 'vma', 'vmacro08411' => 'vma', 'vmacro15407' => 'vma', 'VMungo0251G3619' => 'vmu', 'VMungo0720G1204' => 'vmu', 'VMungo0720G1918' => 'vmu', 'VMungo0720G2387' => 'vmu', 'VMungo0720G2961' => 'vmu', 'VMungo1215G2154' => 'vmu', 'VMungo1383G2411' => 'vmu', 'Zm00001eb051130' => 'zma', 'Zm00001eb116830' => 'zma', 'Zm00001eb116850' => 'zma', 'Zm00001eb151740' => 'zma', 'Zm00001eb292360' => 'zma', 'Zm00001eb301640' => 'zma' ), 'gf_id' => 'HOM05D000856', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000856' ), 'data_identifier' => 'HOM05D000856', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000856', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p00010' => 'bna', 'A03p04160' => 'bna', 'A03p17160' => 'bna', 'A04p23370' => 'bna', 'A05p14860' => 'bna', 'A08p37020' => 'bna', 'A09p08050' => 'bna', 'A09p66800' => 'bna', 'A09p67940' => 'bna', 'A10p02680' => 'bna', 'A10p05320' => 'bna', 'Aa31LG1G20560' => 'aar', 'Aa31LG1G20610' => 'aar', 'Aa31LG1G7810' => 'aar', 'Aa31LG5G3590' => 'aar', 'Aa31LG5G6140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3819' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4683' => 'aag', 'Actinidia04480' => 'ach', 'Actinidia05466' => 'ach', 'Actinidia08445' => 'ach', 'Actinidia21170' => 'ach', 'Actinidia24812' => 'ach', 'Actinidia24951' => 'ach', 'Actinidia40088' => 'ach', 'Ah.02g111660' => 'amhyb', 'Ah.11g048900' => 'amhyb', 'Ah.11g049910' => 'amhyb', 'AL1G13870' => 'aly', 'AL1G13880' => 'aly', 'AL1G16760' => 'aly', 'AL390U10020' => 'aly', 'AL4G25520' => 'aly', 'AL6G19890' => 'aly', 'AL6G19900' => 'aly', 'AL6G19910' => 'aly', 'AL8G40100' => 'aly', 'Aqoxy2G03562' => 'aox', 'Aqoxy5G00316' => 'aox', 'Aqoxy5G00926' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1628KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1H403S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2FU6SJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.882I6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8YRY2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YN1SN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AF70II' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZA8L1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F916KL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHRD8H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KTZ8QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S22EMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8M29T' => 'arhy', 'AT1G04270' => 'ath', 'AT1G04280' => 'ath', 'AT1G06750' => 'ath', 'AT1G33850' => 'ath', 'AT2G30630' => 'ath', 'AT5G09490' => 'ath', 'AT5G09500' => 'ath', 'AT5G09510' => 'ath', 'AT5G43640' => 'ath', 'AT5G63070' => 'ath', 'ATR0605G315' => 'atr', 'Atru.chr11.175' => 'acertr', 'Atru.chr11.653' => 'acertr', 'Atru.chr3.1616' => 'acertr', 'Atru.chr4.2230' => 'acertr', 'Atru.chr4.2232' => 'acertr', 'Atru.chr5.1598' => 'acertr', 'Atru.chr5.1600' => 'acertr', 'Atru.chr5.2188' => 'acertr', 'AUR62008326' => 'cqu', 'AUR62011922' => 'cqu', 'AUR62011924' => 'cqu', 'AUR62021771' => 'cqu', 'AUR62032237' => 'cqu', 'AUR62032240' => 'cqu', 'BcaB01g05572' => 'bca', 'BcaB02g10337' => 'bca', 'BcaB04g19944' => 'bca', 'BcaB05g21548' => 'bca', 'BcaB05g21549' => 'bca', 'BcaB05g23227' => 'bca', 'BcaB06g26256' => 'bca', 'BcaB06g26257' => 'bca', 'BcaB06g28379' => 'bca', 'BcaC02g11159' => 'bca', 'BcaC03g13258' => 'bca', 'BcaC03g13259' => 'bca', 'BcaC05g24456' => 'bca', 'BcaC05g24457' => 'bca', 'BcaC07g36922' => 'bca', 'BcaC07g36923' => 'bca', 'BcaC07g42050' => 'bca', 'BcaC07g42176' => 'bca', 'BcaC07g42195' => 'bca', 'BcaC07g42196' => 'bca', 'BcaNung06674' => 'bca', 'BolC2t06351H' => 'bol', 'BolC2t06352H' => 'bol', 'BolC3t12993H' => 'bol', 'BolC4t23525H' => 'bol', 'BolC4t27475H' => 'bol', 'BolC5t29025H' => 'bol', 'BolC5t29026H' => 'bol', 'BolC8t46898H' => 'bol', 'BolC8t46899H' => 'bol', 'BolC8t52630H' => 'bol', 'BolC8t52765H' => 'bol', 'BolC9t53824H' => 'bol', 'BraA03t09760Z' => 'bra', 'BraA03t10990Z' => 'bra', 'BraA05t20413Z' => 'bra', 'BraA08t35602Z' => 'bra', 'BraA09t36458Z' => 'bra', 'BraA09t42018Z' => 'bra', 'BraA09t42129Z' => 'bra', 'BraA10t42536Z' => 'bra', 'BraA10t42537Z' => 'bra', 'C01p10690' => 'bna', 'C02p03890' => 'bna', 'C02p03900' => 'bna', 'C03p04620' => 'bna', 'C04p19870' => 'bna', 'C04p59670' => 'bna', 'C05p02460' => 'bna', 'C05p02470' => 'bna', 'C08p00980' => 'bna', 'C08p00990' => 'bna', 'C08p51030' => 'bna', 'C08p52360' => 'bna', 'C09p09120' => 'bna', 'CAN.G19.15' => 'can', 'CAN.G251.10' => 'can', 'CAN.G251.9' => 'can', 'CAN.G398.24' => 'can', 'CAN.G410.32' => 'can', 'CAN.G881.2' => 'can', 'CANSAT01G3025' => 'cansat', 'CANSAT78G1211' => 'cansat', 'CANSAT78G1218' => 'cansat', 'CANSAT78G1521' => 'cansat', 'CANSAT78G1670' => 'cansat', 'CARHR003600' => 'chi', 'CARHR003610' => 'chi', 'CARHR006290' => 'chi', 'CARHR006430' => 'chi', 'CARHR124110' => 'chi', 'CARHR203870' => 'chi', 'CARHR203880' => 'chi', 'CARHR203890' => 'chi', 'CARHR276880' => 'chi', 'Carub.0001s0346' => 'cru', 'Carub.0001s0347' => 'cru', 'Carub.0001s0607' => 'cru', 'Carub.0003s2768' => 'cru', 'Carub.0003s2769' => 'cru', 'Carub.0004s1178' => 'cru', 'Carub.0006s0806' => 'cru', 'Carub.0006s0807' => 'cru', 'Carub.0006s0808' => 'cru', 'Carub.0008s0501' => 'cru', 'Carub.0008s2379' => 'cru', 'Ca_08655_v3' => 'car', 'Ca_08922_v3' => 'car', 'Ca_08923_v3' => 'car', 'Ca_09119_v3' => 'car', 'Ca_09703_v3' => 'car', 'Ca_09705_v3' => 'car', 'Ca_09835_v3' => 'car', 'Ca_26403_v3' => 'car', 'Ca_30719_v3' => 'car', 'CBR_g17958' => 'cbr', 'CBR_g40516' => 'cbr', 'Cc00_g05350' => 'ccan', 'Cc01_g18690' => 'ccan', 'Cc03_g04830' => 'ccan', 'Cc03_g04850' => 'ccan', 'CDE02G4469' => 'cde', 'CDE06G0883' => 'cde', 'CDE06G1295' => 'cde', 'CDE06G1390' => 'cde', 'CDE07G0584' => 'cde', 'CDE07G1084' => 'cde', 'CDE08G1259' => 'cde', 'Cfa002341' => 'cfa', 'Cfa024337' => 'cfa', 'Ciclev10004749m.g' => 'ccl', 'Ciclev10006127m.g' => 'ccl', 'Ciclev10019720m.g' => 'ccl', 'Ciclev10022652m.g' => 'ccl', 'CiPaw.01G190400' => 'cil', 'CiPaw.01G190500' => 'cil', 'CiPaw.02G116400' => 'cil', 'CiPaw.02G116500' => 'cil', 'CiPaw.04G183000' => 'cil', 'CiPaw.04G183300' => 'cil', 'ClCG05G004610' => 'cla', 'ClCG05G004620' => 'cla', 'ClCG06G006730' => 'cla', 'ClCG06G006740' => 'cla', 'ClCG11G003690' => 'cla', 'COL.COLO4_08276' => 'col', 'COL.COLO4_08277' => 'col', 'COL.COLO4_15787' => 'col', 'COL.COLO4_15789' => 'col', 'Cpa.g.c44815' => 'cpa', 'Cpa.g.sc52.144' => 'cpa', 'Cpa.g.sc58.46' => 'cpa', 'Cpa.g.sc58.47' => 'cpa', 'Cre08.g360900' => 'cre', 'CsaV3_2G013030' => 'csa', 'CsaV3_2G013050' => 'csa', 'CsaV3_2G015620' => 'csa', 'CsaV3_3G012590' => 'csa', 'CsaV3_3G012600' => 'csa', 'CSS0001641' => 'camsi', 'CSS0008310' => 'camsi', 'CSS0013011' => 'camsi', 'CSS0017147' => 'camsi', 'CSS0022970' => 'camsi', 'CSS0025655' => 'camsi', 'CSS0028665' => 'camsi', 'CSS0029117' => 'camsi', 'CSS0032024' => 'camsi', 'CSS0039681' => 'camsi', 'CSS0046516' => 'camsi', 'CSS0050307' => 'camsi', 'DCAR_005871' => 'dca', 'DCAR_007342' => 'dca', 'DCAR_024228' => 'dca', 'DCAR_027277' => 'dca', 'DCAR_030718' => 'dca', 'Dinv20287' => 'din', 'Dinv22461' => 'din', 'Dinv22464' => 'din', 'Dinv29912' => 'din', 'Dinv29913' => 'din', 'Dinv34580' => 'din', 'Dinv34582' => 'din', 'Dinv44632' => 'din', 'Duzib052G0266' => 'dzi', 'Duzib133G0907' => 'dzi', 'Duzib133G1034' => 'dzi', 'Duzib138G0207' => 'dzi', 'Duzib138G0491' => 'dzi', 'Duzib151G0812' => 'dzi', 'Duzib151G1166' => 'dzi', 'Duzib168G0192' => 'dzi', 'Duzib211G0077' => 'dzi', 'Duzib212G0429' => 'dzi', 'Duzib212G0472' => 'dzi', 'ECA233G2617' => 'eca', 'ECA236G4188' => 'eca', 'ECA240G0936' => 'eca', 'ECA240G1129' => 'eca', 'ECA247G0623' => 'eca', 'EL10Ac5g10451' => 'bvu', 'EL10Ac5g10453' => 'bvu', 'EL10Ac5g10894' => 'bvu', 'Eucgr.H00192' => 'egr', 'Eucgr.H00193' => 'egr', 'Eucgr.H00194' => 'egr', 'Eucgr.J01562' => 'egr', 'Eucgr.K03301' => 'egr', 'FAN02G0632' => 'fan', 'FAN05G5378' => 'fan', 'FAN09G3247' => 'fan', 'FAN12G0435' => 'fan', 'FAN12G2426' => 'fan', 'FAN14G1707' => 'fan', 'FAN14G4725' => 'fan', 'FAN15G2071' => 'fan', 'FAN17G3065' => 'fan', 'FAN19G1376' => 'fan', 'FAN20G0354' => 'fan', 'FAN20G2429' => 'fan', 'FAN20G2658' => 'fan', 'FAN24G2343' => 'fan', 'FAN27G2362' => 'fan', 'FAN28G1765' => 'fan', 'FvH4_1g16020' => 'fve', 'FvH4_2g04890' => 'fve', 'FvH4_2g22270' => 'fve', 'FvH4_4g02630' => 'fve', 'FvH4_4g02640' => 'fve', 'FvH4_6g02650' => 'fve', 'Glyma.02G140600' => 'gma', 'Glyma.03G159900' => 'gma', 'Glyma.05G234800' => 'gma', 'Glyma.07G269600' => 'gma', 'Glyma.08G042300' => 'gma', 'Glyma.10G033500' => 'gma', 'Glyma.10G185200' => 'gma', 'Glyma.17G004300' => 'gma', 'Glyma.19G161900' => 'gma', 'Glyma.20G205100' => 'gma', 'Glyma.20G205200' => 'gma', 'Gohir.A01G139101' => 'ghi', 'Gohir.A02G035600' => 'ghi', 'Gohir.A02G117901' => 'ghi', 'Gohir.A07G210100' => 'ghi', 'Gohir.A07G210200' => 'ghi', 'Gohir.A08G061100' => 'ghi', 'Gohir.A09G223000' => 'ghi', 'Gohir.A09G223100' => 'ghi', 'Gohir.A10G113900' => 'ghi', 'Gohir.A10G114000' => 'ghi', 'Gohir.D02G042300' => 'ghi', 'Gohir.D07G216100' => 'ghi', 'Gohir.D07G216200' => 'ghi', 'Gohir.D08G070400' => 'ghi', 'Gohir.D09G225000' => 'ghi', 'Gohir.D09G225100' => 'ghi', 'Gohir.D10G152300' => 'ghi', 'Gohir.D10G153200' => 'ghi', 'Gohir.D11G133701' => 'ghi', 'Gorai.004G074100' => 'gra', 'Gorai.005G046800' => 'gra', 'Gorai.006G246500' => 'gra', 'Gorai.006G246600' => 'gra', 'Gorai.007G142900' => 'gra', 'Gorai.011G171000' => 'gra', 'Gorai.011G171100' => 'gra', 'Gorai.013G104300' => 'gra', 'Gorai.013G104400' => 'gra', 'GSVIVG01000754001' => 'vvi', 'GSVIVG01000756001' => 'vvi', 'GSVIVG01010903001' => 'vvi', 'GSVIVG01017623001' => 'vvi', 'GSVIVG01018113001' => 'vvi', 'GSVIVG01018116001' => 'vvi', 'GSVIVG01018118001' => 'vvi', 'HanXRQChr03g0076211' => 'han', 'HanXRQChr03g0092431' => 'han', 'HanXRQChr03g0092441' => 'han', 'HanXRQChr03g0092591' => 'han', 'HanXRQChr03g0092671' => 'han', 'HanXRQChr03g0092681' => 'han', 'HanXRQChr03g0092691' => 'han', 'HanXRQChr03g0092701' => 'han', 'HanXRQChr03g0092721' => 'han', 'HanXRQChr03g0092731' => 'han', 'HanXRQChr04g0113681' => 'han', 'HanXRQChr10g0281371' => 'han', 'HanXRQChr11g0337141' => 'han', 'HanXRQChr13g0424521' => 'han', 'HanXRQChr13g0424531' => 'han', 'HanXRQChr13g0424541' => 'han', 'HanXRQChr16g0498221' => 'han', 'Haze_04377' => 'cav', 'Haze_11298' => 'cav', 'Haze_24547' => 'cav', 'Haze_24550' => 'cav', 'Haze_26587' => 'cav', 'Hma1.2p1_0650F.1_g195410' => 'hma', 'Hma1.2p1_0893F.1_g233470' => 'hma', 'HPP92_006508' => 'vpl', 'HPP92_024780' => 'vpl', 'Hund02688' => 'sun', 'Hund09380' => 'sun', 'Hund09381' => 'sun', 'Hund09832' => 'sun', 'Hund09833' => 'sun', 'Hund11351' => 'sun', 'Hund11513' => 'sun', 'Lalb_Chr06g0162591' => 'lal', 'Lalb_Chr06g0162601' => 'lal', 'Lalb_Chr06g0169321' => 'lal', 'Lalb_Chr09g0330951' => 'lal', 'Lalb_Chr16g0387631' => 'lal', 'Lalb_Chr21g0306241' => 'lal', 'Lalb_Chr25g0290051' => 'lal', 'Lalb_Chr25g0290061' => 'lal', 'Lalb_Chr25g0290071' => 'lal', 'Lj1g0003876' => 'lja', 'Lj1P1207T36' => 'lonja', 'Lj2C1156G12' => 'lonja', 'Lj3A793G39' => 'lonja', 'Lj3C580G2' => 'lonja', 'Lj3C780G2' => 'lonja', 'Lj3C780T4' => 'lonja', 'Lj3C793G9' => 'lonja', 'Lj4g0012960' => 'lja', 'Lj5g0021252' => 'lja', 'Lj5g0021484' => 'lja', 'Lj5g0024528' => 'lja', 'Lj6A399T12' => 'lonja', 'Lj6A656G65' => 'lonja', 'Lsat_1_v5_gn_3_125500' => 'lsa', 'Lsat_1_v5_gn_3_125540' => 'lsa', 'Lsat_1_v5_gn_5_72701' => 'lsa', 'Lsat_1_v5_gn_8_91560' => 'lsa', 'Lsat_1_v5_gn_9_9640' => 'lsa', 'Manes.01G200600' => 'mes', 'Manes.01G200700' => 'mes', 'Manes.03G168900' => 'mes', 'Manes.03G169000' => 'mes', 'Manes.05G085801' => 'mes', 'Manes.05G086200' => 'mes', 'Manes.15G036700' => 'mes', 'Manes.15G036900' => 'mes', 'Mapoly0004s0172' => 'mpo', 'Mapoly0023s0001' => 'mpo', 'Mapoly0142s0012' => 'mpo', 'MBI01_g32854_MAGBIO' => 'mbi', 'MBI11_g24427_MAGBIO' => 'mbi', 'MBI11_g47319_MAGBIO' => 'mbi', 'MCO01G433' => 'mco', 'MD00G1187800' => 'mdo', 'MD04G1226500' => 'mdo', 'MD05G1203900' => 'mdo', 'MD10G1191100' => 'mdo', 'MD12G1243500' => 'mdo', 'MD13G1207000' => 'mdo', 'MD13G1207100' => 'mdo', 'MD16G1208600' => 'mdo', 'Medtr1g050352' => 'mtr', 'Medtr1g070385' => 'mtr', 'Medtr1g070450' => 'mtr', 'Medtr1g075200' => 'mtr', 'Medtr1g075250' => 'mtr', 'Medtr1g075260' => 'mtr', 'Medtr1g475250' => 'mtr', 'Medtr4g075450' => 'mtr', 'Medtr7g096300' => 'mtr', 'Medtr8g105110' => 'mtr', 'MELO3C006470.2' => 'cme', 'MELO3C006471.2' => 'cme', 'MELO3C020772.2' => 'cme', 'MELO3C026780.2' => 'cme', 'MELO3C026781.2' => 'cme', 'Migut.D00390' => 'egut', 'Migut.G00435' => 'egut', 'Migut.G00436' => 'egut', 'Migut.G00718' => 'egut', 'MSTRG.21891' => 'ama', 'MSTRG.26910' => 'ama', 'MSTRG.4099' => 'ama', 'MSTRG.9925' => 'ama', 'Nitab4.5_0000165g0010' => 'nta', 'Nitab4.5_0000209g0180' => 'nta', 'Nitab4.5_0000244g0440' => 'nta', 'Nitab4.5_0000525g0220' => 'nta', 'Nitab4.5_0001597g0020' => 'nta', 'Nitab4.5_0001878g0040' => 'nta', 'Nitab4.5_0001878g0060' => 'nta', 'Nitab4.5_0002838g0100' => 'nta', 'Nitab4.5_0002838g0120' => 'nta', 'Nitab4.5_0004798g0030' => 'nta', 'Nitab4.5_0005420g0010' => 'nta', 'Nitab4.5_0005507g0010' => 'nta', 'Nitab4.5_0005574g0020' => 'nta', 'Nitab4.5_0005838g0010' => 'nta', 'Nitab4.5_0010580g0020' => 'nta', 'Nn1g02599' => 'nnu', 'Nn1g02608' => 'nnu', 'Nn3g17742' => 'nnu', 'Nn3g19534' => 'nnu', 'Nn3g19535' => 'nnu', 'Oeu008790.1' => 'oeu', 'Oeu008792.1' => 'oeu', 'Oeu032590.1' => 'oeu', 'Oeu035349.1' => 'oeu', 'Oeu049791.1' => 'oeu', 'Os01g0774500' => 'osa', 'Os03g0628800' => 'osa', 'Os03g0798600' => 'osa', 'Os05g0508800' => 'osa', 'Peaxi162Scf00036g02018' => 'pax', 'Peaxi162Scf00578g00032' => 'pax', 'Peaxi162Scf00578g00317' => 'pax', 'Peaxi162Scf00785g00114' => 'pax', 'Peaxi162Scf00813g00119' => 'pax', 'Peaxi162Scf00906g00227' => 'pax', 'PGR004G0875' => 'pgr', 'PGR004G2424' => 'pgr', 'PGR031G1239' => 'pgr', 'PGR031G2474' => 'pgr', 'PGR044G0423' => 'pgr', 'PGSC0003DMG400001128' => 'stu', 'PGSC0003DMG400007336' => 'stu', 'PGSC0003DMG400016318' => 'stu', 'PGSC0003DMG400016319' => 'stu', 'PGSC0003DMG400018074' => 'stu', 'Phvul.001G157700' => 'pvu', 'Phvul.002G148550' => 'pvu', 'Phvul.002G320200' => 'pvu', 'Phvul.003G089200' => 'pvu', 'Phvul.007G126000' => 'pvu', 'Phvul.007G126100' => 'pvu', 'Phvul.007G178000' => 'pvu', 'Phvul.007G178200' => 'pvu', 'Potri.002G043000' => 'ptr', 'Potri.002G043200' => 'ptr', 'Potri.003G123750' => 'ptr', 'Potri.005G055401' => 'ptr', 'Potri.005G219700' => 'ptr', 'Potri.005G220000' => 'ptr', 'Potri.008G161901' => 'ptr', 'Potri.008G162000' => 'ptr', 'Potri.008G162400' => 'ptr', 'Potri.010G076900' => 'ptr', 'Pp3c12_9180' => 'ppa', 'Pp3c13_19770' => 'ppa', 'Pp3c14_22950' => 'ppa', 'Pp3c16_12160' => 'ppa', 'Pp3c27_7820' => 'ppa', 'Pp3c2_3490' => 'ppa', 'Pp3c3_23700' => 'ppa', 'Pp3c3_36520' => 'ppa', 'Pp3c4_15250' => 'ppa', 'PRCOL_00007002' => 'pco', 'Prupe.1G030600' => 'ppe', 'Prupe.1G030700' => 'ppe', 'Prupe.6G345200' => 'ppe', 'Prupe.8G230300' => 'ppe', 'Prupe.8G230500' => 'ppe', 'Psat3g059600' => 'psa', 'Psat5g200920' => 'psa', 'Psat6g056440' => 'psa', 'Psat6g057360' => 'psa', 'Psat6g134120' => 'psa', 'Psat6g134160' => 'psa', 'Psat7g008640' => 'psa', 'Psat7g185240' => 'psa', 'PSO017G1330' => 'pso', 'PSO063G6097' => 'pso', 'PSO170G0835' => 'pso', 'PSO170G2499' => 'pso', 'PSO210G5058' => 'pso', 'PSO210G6154' => 'pso', 'PSO585G0031' => 'pso', 'PSO832G0264' => 'pso', 'PSO832G4288' => 'pso', 'QL03p027355' => 'qlo', 'QL03p027430' => 'qlo', 'QL04p081380' => 'qlo', 'QL06p015642' => 'qlo', 'QL06p015650' => 'qlo', 'QL06p015686' => 'qlo', 'QL12p042927' => 'qlo', 'QL93p1863_0035' => 'qlo', 'RcHm_v2.0_Chr3g0450581' => 'rch', 'RcHm_v2.0_Chr4g0390371' => 'rch', 'RcHm_v2.0_Chr4g0390381' => 'rch', 'RcHm_v2.0_Chr4g0390491' => 'rch', 'RcHm_v2.0_Chr4g0390501' => 'rch', 'RcHm_v2.0_Chr6g0289231' => 'rch', 'Rhsim04G0190400' => 'rsi', 'Rhsim04G0190500' => 'rsi', 'Rhsim04G0190600' => 'rsi', 'Rhsim13G0031400' => 'rsi', 'Rhsim13G0165600' => 'rsi', 'RhsimUnG0114600' => 'rsi', 'RhsimUnG0114700' => 'rsi', 'Sabra02G0034800' => 'sbr', 'Sabra02G0035100' => 'sbr', 'Sabra05G0168600' => 'sbr', 'Sabra05G0168800' => 'sbr', 'Sabra08G0123700' => 'sbr', 'Sabra10G0031900' => 'sbr', 'Sabra13G0039000' => 'sbr', 'SalBow2G0782' => 'sbo', 'SalBow2G1403' => 'sbo', 'SalBow4G0074' => 'sbo', 'SalBow4G2635' => 'sbo', 'SalBow5G3010' => 'sbo', 'Sc05g0000870' => 'sci', 'Sc05g0000890' => 'sci', 'Sc13g0005000' => 'sci', 'Sc13g0005030' => 'sci', 'Sc19g0003790' => 'sci', 'Sc19g0003800' => 'sci', 'Sed0003467' => 'sed', 'Sed0009355' => 'sed', 'Sed0009894' => 'sed', 'Sed0011972' => 'sed', 'Sed0021483' => 'sed', 'Sed0021750' => 'sed', 'Sed0026279' => 'sed', 'SEGI_05312' => 'sgi', 'SEGI_10112' => 'sgi', 'SEGI_15835' => 'sgi', 'SEGI_30386' => 'sgi', 'SEGI_34122' => 'sgi', 'SEGI_35063' => 'sgi', 'SGA_v2.0_scaffold101G29794' => 'sas', 'SGA_v2.0_scaffold1G00573' => 'sas', 'SGA_v2.0_scaffold79G25637' => 'sas', 'SGA_v2.0_scaffold88G27283' => 'sas', 'SGA_v2.0_scaffold88G27285' => 'sas', 'SGA_v2.0_scaffold88G27331' => 'sas', 'SHI09937' => 'shi', 'SMO119G0302' => 'smo', 'SMO137G0231' => 'smo', 'SMO367G1151' => 'smo', 'Solyc02g082000.3' => 'sly', 'Solyc06g031670.3' => 'sly', 'Solyc06g053810.3' => 'sly', 'Solyc07g025457.1' => 'sly', 'Solyc08g059740.1' => 'sly', 'Solyc08g059750.3' => 'sly', 'Solyc09g083370.3' => 'sly', 'Solyc12g038950.3' => 'sly', 'Sopen02g026630' => 'spe', 'Sopen06g018930' => 'spe', 'Sopen06g018940' => 'spe', 'Sopen08g009460' => 'spe', 'Sopen09g032290' => 'spe', 'Sp1g03080' => 'spa', 'Sp1g03090' => 'spa', 'Sp1g05480' => 'spa', 'Sp2g07860' => 'spa', 'Sp2g08430' => 'spa', 'Sp2g08440' => 'spa', 'Sp2g26200' => 'spa', 'Sp4g13170' => 'spa', 'Sp6g33840' => 'spa', 'SpUn1204_0010' => 'spa', 'TAR365G0908' => 'tar', 'TAR381G1270' => 'tar', 'TAR381G1651' => 'tar', 'TAR625G1131' => 'tar', 'TAR633G0962' => 'tar', 'TAR633G1729' => 'tar', 'TAR633G1864' => 'tar', 'TAR636G0221' => 'tar', 'TAR636G0314' => 'tar', 'TAR636G3202' => 'tar', 'THA.LOC104800805' => 'tha', 'THA.LOC104801096' => 'tha', 'THA.LOC104801555' => 'tha', 'THA.LOC104808491' => 'tha', 'THA.LOC104808595' => 'tha', 'THA.LOC104815985' => 'tha', 'THA.LOC104822250' => 'tha', 'THA.LOC104826071' => 'tha', 'Thecc.01G265200' => 'tca', 'Thecc.01G265300' => 'tca', 'Thecc.01G265700' => 'tca', 'Thecc.03G109100' => 'tca', 'Thecc.04G245900' => 'tca', 'Thecc.04G246000' => 'tca', 'Thhalv10003334m.g' => 'esa', 'Thhalv10005508m.g' => 'esa', 'Thhalv10005643m.g' => 'esa', 'Thhalv10007316m.g' => 'esa', 'Thhalv10009006m.g' => 'esa', 'Thhalv10009309m.g' => 'esa', 'Thhalv10014917m.g' => 'esa', 'Thhalv10014919m.g' => 'esa', 'Thhalv10015393m.g' => 'esa', 'Thhalv10016515m.g' => 'esa', 'Thhalv10029242m.g' => 'esa', 'TPR.G16654' => 'tpr', 'TPR.G20589' => 'tpr', 'TPR.G23029' => 'tpr', 'TPR.G27731' => 'tpr', 'TPR.G28889' => 'tpr', 'TPR.G28899' => 'tpr', 'TPR.G30846' => 'tpr', 'TPR.G5452' => 'tpr', 'TPR.G5713' => 'tpr', 'TPR.G9046' => 'tpr', 'TPR.G9061' => 'tpr', 'TWI09G1075' => 'twi', 'TWI12G0806' => 'twi', 'TWI18G0108' => 'twi', 'TWI53G1361' => 'twi', 'TWI73G0185' => 'twi', 'TWI73G0427' => 'twi', 'unitig_37.g12001' => 'ugi', 'unitig_747.g21660' => 'ugi', 'unitig_748.g7232' => 'ugi', 'unitig_748.g7315' => 'ugi', 'unitig_85.g27262' => 'ugi', 'unitig_92.g28220' => 'ugi', 'vmacro02632' => 'vma', 'vmacro08410' => 'vma', 'vmacro08411' => 'vma', 'vmacro15407' => 'vma', 'VMungo0251G3619' => 'vmu', 'VMungo0720G1204' => 'vmu', 'VMungo0720G1918' => 'vmu', 'VMungo0720G2387' => 'vmu', 'VMungo0720G2961' => 'vmu', 'VMungo1215G2154' => 'vmu', 'VMungo1383G2411' => 'vmu', 'Zm00001eb051130' => 'zma', 'Zm00001eb116830' => 'zma', 'Zm00001eb116850' => 'zma', 'Zm00001eb151740' => 'zma', 'Zm00001eb292360' => 'zma', 'Zm00001eb301640' => 'zma' ) $gf_id = 'HOM05D000856' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000856' ) $data_identifier = 'HOM05D000856' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 13, 'ath' => (int) 10, 'atr' => (int) 1, 'acertr' => (int) 8, 'cqu' => (int) 6, 'bca' => (int) 21, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 11, 'car' => (int) 9, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 8, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 5, 'fan' => (int) 16, 'fve' => (int) 6, 'gma' => (int) 11, 'ghi' => (int) 19, 'gra' => (int) 9, 'vvi' => (int) 7, 'han' => (int) 17, 'cav' => (int) 5, 'hma' => (int) 2, 'vpl' => (int) 2, 'sun' => (int) 7, 'lal' => (int) 9, 'lja' => (int) 5, 'lonja' => (int) 9, 'lsa' => (int) 5, 'mes' => (int) 8, 'mpo' => (int) 3, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 10, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 15, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 9, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 9, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 6, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 5, 'spa' => (int) 10, 'tar' => (int) 10, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 11, 'tpr' => (int) 11, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 4, 'vmu' => (int) 7, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb301640' $species_info = array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ) $local_species = 'tpr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000856', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p00010' => 'bna', 'A03p04160' => 'bna', 'A03p17160' => 'bna', 'A04p23370' => 'bna', 'A05p14860' => 'bna', 'A08p37020' => 'bna', 'A09p08050' => 'bna', 'A09p66800' => 'bna', 'A09p67940' => 'bna', 'A10p02680' => 'bna', 'A10p05320' => 'bna', 'Aa31LG1G20560' => 'aar', 'Aa31LG1G20610' => 'aar', 'Aa31LG1G7810' => 'aar', 'Aa31LG5G3590' => 'aar', 'Aa31LG5G6140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3819' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4683' => 'aag', 'Actinidia04480' => 'ach', 'Actinidia05466' => 'ach', 'Actinidia08445' => 'ach', 'Actinidia21170' => 'ach', 'Actinidia24812' => 'ach', 'Actinidia24951' => 'ach', 'Actinidia40088' => 'ach', 'Ah.02g111660' => 'amhyb', 'Ah.11g048900' => 'amhyb', 'Ah.11g049910' => 'amhyb', 'AL1G13870' => 'aly', 'AL1G13880' => 'aly', 'AL1G16760' => 'aly', 'AL390U10020' => 'aly', 'AL4G25520' => 'aly', 'AL6G19890' => 'aly', 'AL6G19900' => 'aly', 'AL6G19910' => 'aly', 'AL8G40100' => 'aly', 'Aqoxy2G03562' => 'aox', 'Aqoxy5G00316' => 'aox', 'Aqoxy5G00926' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1628KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1H403S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2FU6SJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.882I6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8YRY2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YN1SN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AF70II' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZA8L1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F916KL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHRD8H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KTZ8QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S22EMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8M29T' => 'arhy', 'AT1G04270' => 'ath', 'AT1G04280' => 'ath', 'AT1G06750' => 'ath', 'AT1G33850' => 'ath', 'AT2G30630' => 'ath', 'AT5G09490' => 'ath', 'AT5G09500' => 'ath', 'AT5G09510' => 'ath', 'AT5G43640' => 'ath', 'AT5G63070' => 'ath', 'ATR0605G315' => 'atr', 'Atru.chr11.175' => 'acertr', 'Atru.chr11.653' => 'acertr', 'Atru.chr3.1616' => 'acertr', 'Atru.chr4.2230' => 'acertr', 'Atru.chr4.2232' => 'acertr', 'Atru.chr5.1598' => 'acertr', 'Atru.chr5.1600' => 'acertr', 'Atru.chr5.2188' => 'acertr', 'AUR62008326' => 'cqu', 'AUR62011922' => 'cqu', 'AUR62011924' => 'cqu', 'AUR62021771' => 'cqu', 'AUR62032237' => 'cqu', 'AUR62032240' => 'cqu', 'BcaB01g05572' => 'bca', 'BcaB02g10337' => 'bca', 'BcaB04g19944' => 'bca', 'BcaB05g21548' => 'bca', 'BcaB05g21549' => 'bca', 'BcaB05g23227' => 'bca', 'BcaB06g26256' => 'bca', 'BcaB06g26257' => 'bca', 'BcaB06g28379' => 'bca', 'BcaC02g11159' => 'bca', 'BcaC03g13258' => 'bca', 'BcaC03g13259' => 'bca', 'BcaC05g24456' => 'bca', 'BcaC05g24457' => 'bca', 'BcaC07g36922' => 'bca', 'BcaC07g36923' => 'bca', 'BcaC07g42050' => 'bca', 'BcaC07g42176' => 'bca', 'BcaC07g42195' => 'bca', 'BcaC07g42196' => 'bca', 'BcaNung06674' => 'bca', 'BolC2t06351H' => 'bol', 'BolC2t06352H' => 'bol', 'BolC3t12993H' => 'bol', 'BolC4t23525H' => 'bol', 'BolC4t27475H' => 'bol', 'BolC5t29025H' => 'bol', 'BolC5t29026H' => 'bol', 'BolC8t46898H' => 'bol', 'BolC8t46899H' => 'bol', 'BolC8t52630H' => 'bol', 'BolC8t52765H' => 'bol', 'BolC9t53824H' => 'bol', 'BraA03t09760Z' => 'bra', 'BraA03t10990Z' => 'bra', 'BraA05t20413Z' => 'bra', 'BraA08t35602Z' => 'bra', 'BraA09t36458Z' => 'bra', 'BraA09t42018Z' => 'bra', 'BraA09t42129Z' => 'bra', 'BraA10t42536Z' => 'bra', 'BraA10t42537Z' => 'bra', 'C01p10690' => 'bna', 'C02p03890' => 'bna', 'C02p03900' => 'bna', 'C03p04620' => 'bna', 'C04p19870' => 'bna', 'C04p59670' => 'bna', 'C05p02460' => 'bna', 'C05p02470' => 'bna', 'C08p00980' => 'bna', 'C08p00990' => 'bna', 'C08p51030' => 'bna', 'C08p52360' => 'bna', 'C09p09120' => 'bna', 'CAN.G19.15' => 'can', 'CAN.G251.10' => 'can', 'CAN.G251.9' => 'can', 'CAN.G398.24' => 'can', 'CAN.G410.32' => 'can', 'CAN.G881.2' => 'can', 'CANSAT01G3025' => 'cansat', 'CANSAT78G1211' => 'cansat', 'CANSAT78G1218' => 'cansat', 'CANSAT78G1521' => 'cansat', 'CANSAT78G1670' => 'cansat', 'CARHR003600' => 'chi', 'CARHR003610' => 'chi', 'CARHR006290' => 'chi', 'CARHR006430' => 'chi', 'CARHR124110' => 'chi', 'CARHR203870' => 'chi', 'CARHR203880' => 'chi', 'CARHR203890' => 'chi', 'CARHR276880' => 'chi', 'Carub.0001s0346' => 'cru', 'Carub.0001s0347' => 'cru', 'Carub.0001s0607' => 'cru', 'Carub.0003s2768' => 'cru', 'Carub.0003s2769' => 'cru', 'Carub.0004s1178' => 'cru', 'Carub.0006s0806' => 'cru', 'Carub.0006s0807' => 'cru', 'Carub.0006s0808' => 'cru', 'Carub.0008s0501' => 'cru', 'Carub.0008s2379' => 'cru', 'Ca_08655_v3' => 'car', 'Ca_08922_v3' => 'car', 'Ca_08923_v3' => 'car', 'Ca_09119_v3' => 'car', 'Ca_09703_v3' => 'car', 'Ca_09705_v3' => 'car', 'Ca_09835_v3' => 'car', 'Ca_26403_v3' => 'car', 'Ca_30719_v3' => 'car', 'CBR_g17958' => 'cbr', 'CBR_g40516' => 'cbr', 'Cc00_g05350' => 'ccan', 'Cc01_g18690' => 'ccan', 'Cc03_g04830' => 'ccan', 'Cc03_g04850' => 'ccan', 'CDE02G4469' => 'cde', 'CDE06G0883' => 'cde', 'CDE06G1295' => 'cde', 'CDE06G1390' => 'cde', 'CDE07G0584' => 'cde', 'CDE07G1084' => 'cde', 'CDE08G1259' => 'cde', 'Cfa002341' => 'cfa', 'Cfa024337' => 'cfa', 'Ciclev10004749m.g' => 'ccl', 'Ciclev10006127m.g' => 'ccl', 'Ciclev10019720m.g' => 'ccl', 'Ciclev10022652m.g' => 'ccl', 'CiPaw.01G190400' => 'cil', 'CiPaw.01G190500' => 'cil', 'CiPaw.02G116400' => 'cil', 'CiPaw.02G116500' => 'cil', 'CiPaw.04G183000' => 'cil', 'CiPaw.04G183300' => 'cil', 'ClCG05G004610' => 'cla', 'ClCG05G004620' => 'cla', 'ClCG06G006730' => 'cla', 'ClCG06G006740' => 'cla', 'ClCG11G003690' => 'cla', 'COL.COLO4_08276' => 'col', 'COL.COLO4_08277' => 'col', 'COL.COLO4_15787' => 'col', 'COL.COLO4_15789' => 'col', 'Cpa.g.c44815' => 'cpa', 'Cpa.g.sc52.144' => 'cpa', 'Cpa.g.sc58.46' => 'cpa', 'Cpa.g.sc58.47' => 'cpa', 'Cre08.g360900' => 'cre', 'CsaV3_2G013030' => 'csa', 'CsaV3_2G013050' => 'csa', 'CsaV3_2G015620' => 'csa', 'CsaV3_3G012590' => 'csa', 'CsaV3_3G012600' => 'csa', 'CSS0001641' => 'camsi', 'CSS0008310' => 'camsi', 'CSS0013011' => 'camsi', 'CSS0017147' => 'camsi', 'CSS0022970' => 'camsi', 'CSS0025655' => 'camsi', 'CSS0028665' => 'camsi', 'CSS0029117' => 'camsi', 'CSS0032024' => 'camsi', 'CSS0039681' => 'camsi', 'CSS0046516' => 'camsi', 'CSS0050307' => 'camsi', 'DCAR_005871' => 'dca', 'DCAR_007342' => 'dca', 'DCAR_024228' => 'dca', 'DCAR_027277' => 'dca', 'DCAR_030718' => 'dca', 'Dinv20287' => 'din', 'Dinv22461' => 'din', 'Dinv22464' => 'din', 'Dinv29912' => 'din', 'Dinv29913' => 'din', 'Dinv34580' => 'din', 'Dinv34582' => 'din', 'Dinv44632' => 'din', 'Duzib052G0266' => 'dzi', 'Duzib133G0907' => 'dzi', 'Duzib133G1034' => 'dzi', 'Duzib138G0207' => 'dzi', 'Duzib138G0491' => 'dzi', 'Duzib151G0812' => 'dzi', 'Duzib151G1166' => 'dzi', 'Duzib168G0192' => 'dzi', 'Duzib211G0077' => 'dzi', 'Duzib212G0429' => 'dzi', 'Duzib212G0472' => 'dzi', 'ECA233G2617' => 'eca', 'ECA236G4188' => 'eca', 'ECA240G0936' => 'eca', 'ECA240G1129' => 'eca', 'ECA247G0623' => 'eca', 'EL10Ac5g10451' => 'bvu', 'EL10Ac5g10453' => 'bvu', 'EL10Ac5g10894' => 'bvu', 'Eucgr.H00192' => 'egr', 'Eucgr.H00193' => 'egr', 'Eucgr.H00194' => 'egr', 'Eucgr.J01562' => 'egr', 'Eucgr.K03301' => 'egr', 'FAN02G0632' => 'fan', 'FAN05G5378' => 'fan', 'FAN09G3247' => 'fan', 'FAN12G0435' => 'fan', 'FAN12G2426' => 'fan', 'FAN14G1707' => 'fan', 'FAN14G4725' => 'fan', 'FAN15G2071' => 'fan', 'FAN17G3065' => 'fan', 'FAN19G1376' => 'fan', 'FAN20G0354' => 'fan', 'FAN20G2429' => 'fan', 'FAN20G2658' => 'fan', 'FAN24G2343' => 'fan', 'FAN27G2362' => 'fan', 'FAN28G1765' => 'fan', 'FvH4_1g16020' => 'fve', 'FvH4_2g04890' => 'fve', 'FvH4_2g22270' => 'fve', 'FvH4_4g02630' => 'fve', 'FvH4_4g02640' => 'fve', 'FvH4_6g02650' => 'fve', 'Glyma.02G140600' => 'gma', 'Glyma.03G159900' => 'gma', 'Glyma.05G234800' => 'gma', 'Glyma.07G269600' => 'gma', 'Glyma.08G042300' => 'gma', 'Glyma.10G033500' => 'gma', 'Glyma.10G185200' => 'gma', 'Glyma.17G004300' => 'gma', 'Glyma.19G161900' => 'gma', 'Glyma.20G205100' => 'gma', 'Glyma.20G205200' => 'gma', 'Gohir.A01G139101' => 'ghi', 'Gohir.A02G035600' => 'ghi', 'Gohir.A02G117901' => 'ghi', 'Gohir.A07G210100' => 'ghi', 'Gohir.A07G210200' => 'ghi', 'Gohir.A08G061100' => 'ghi', 'Gohir.A09G223000' => 'ghi', 'Gohir.A09G223100' => 'ghi', 'Gohir.A10G113900' => 'ghi', 'Gohir.A10G114000' => 'ghi', 'Gohir.D02G042300' => 'ghi', 'Gohir.D07G216100' => 'ghi', 'Gohir.D07G216200' => 'ghi', 'Gohir.D08G070400' => 'ghi', 'Gohir.D09G225000' => 'ghi', 'Gohir.D09G225100' => 'ghi', 'Gohir.D10G152300' => 'ghi', 'Gohir.D10G153200' => 'ghi', 'Gohir.D11G133701' => 'ghi', 'Gorai.004G074100' => 'gra', 'Gorai.005G046800' => 'gra', 'Gorai.006G246500' => 'gra', 'Gorai.006G246600' => 'gra', 'Gorai.007G142900' => 'gra', 'Gorai.011G171000' => 'gra', 'Gorai.011G171100' => 'gra', 'Gorai.013G104300' => 'gra', 'Gorai.013G104400' => 'gra', 'GSVIVG01000754001' => 'vvi', 'GSVIVG01000756001' => 'vvi', 'GSVIVG01010903001' => 'vvi', 'GSVIVG01017623001' => 'vvi', 'GSVIVG01018113001' => 'vvi', 'GSVIVG01018116001' => 'vvi', 'GSVIVG01018118001' => 'vvi', 'HanXRQChr03g0076211' => 'han', 'HanXRQChr03g0092431' => 'han', 'HanXRQChr03g0092441' => 'han', 'HanXRQChr03g0092591' => 'han', 'HanXRQChr03g0092671' => 'han', 'HanXRQChr03g0092681' => 'han', 'HanXRQChr03g0092691' => 'han', 'HanXRQChr03g0092701' => 'han', 'HanXRQChr03g0092721' => 'han', 'HanXRQChr03g0092731' => 'han', 'HanXRQChr04g0113681' => 'han', 'HanXRQChr10g0281371' => 'han', 'HanXRQChr11g0337141' => 'han', 'HanXRQChr13g0424521' => 'han', 'HanXRQChr13g0424531' => 'han', 'HanXRQChr13g0424541' => 'han', 'HanXRQChr16g0498221' => 'han', 'Haze_04377' => 'cav', 'Haze_11298' => 'cav', 'Haze_24547' => 'cav', 'Haze_24550' => 'cav', 'Haze_26587' => 'cav', 'Hma1.2p1_0650F.1_g195410' => 'hma', 'Hma1.2p1_0893F.1_g233470' => 'hma', 'HPP92_006508' => 'vpl', 'HPP92_024780' => 'vpl', 'Hund02688' => 'sun', 'Hund09380' => 'sun', 'Hund09381' => 'sun', 'Hund09832' => 'sun', 'Hund09833' => 'sun', 'Hund11351' => 'sun', 'Hund11513' => 'sun', 'Lalb_Chr06g0162591' => 'lal', 'Lalb_Chr06g0162601' => 'lal', 'Lalb_Chr06g0169321' => 'lal', 'Lalb_Chr09g0330951' => 'lal', 'Lalb_Chr16g0387631' => 'lal', 'Lalb_Chr21g0306241' => 'lal', 'Lalb_Chr25g0290051' => 'lal', 'Lalb_Chr25g0290061' => 'lal', 'Lalb_Chr25g0290071' => 'lal', 'Lj1g0003876' => 'lja', 'Lj1P1207T36' => 'lonja', 'Lj2C1156G12' => 'lonja', 'Lj3A793G39' => 'lonja', 'Lj3C580G2' => 'lonja', 'Lj3C780G2' => 'lonja', 'Lj3C780T4' => 'lonja', 'Lj3C793G9' => 'lonja', 'Lj4g0012960' => 'lja', 'Lj5g0021252' => 'lja', 'Lj5g0021484' => 'lja', 'Lj5g0024528' => 'lja', 'Lj6A399T12' => 'lonja', 'Lj6A656G65' => 'lonja', 'Lsat_1_v5_gn_3_125500' => 'lsa', 'Lsat_1_v5_gn_3_125540' => 'lsa', 'Lsat_1_v5_gn_5_72701' => 'lsa', 'Lsat_1_v5_gn_8_91560' => 'lsa', 'Lsat_1_v5_gn_9_9640' => 'lsa', 'Manes.01G200600' => 'mes', 'Manes.01G200700' => 'mes', 'Manes.03G168900' => 'mes', 'Manes.03G169000' => 'mes', 'Manes.05G085801' => 'mes', 'Manes.05G086200' => 'mes', 'Manes.15G036700' => 'mes', 'Manes.15G036900' => 'mes', 'Mapoly0004s0172' => 'mpo', 'Mapoly0023s0001' => 'mpo', 'Mapoly0142s0012' => 'mpo', 'MBI01_g32854_MAGBIO' => 'mbi', 'MBI11_g24427_MAGBIO' => 'mbi', 'MBI11_g47319_MAGBIO' => 'mbi', 'MCO01G433' => 'mco', 'MD00G1187800' => 'mdo', 'MD04G1226500' => 'mdo', 'MD05G1203900' => 'mdo', 'MD10G1191100' => 'mdo', 'MD12G1243500' => 'mdo', 'MD13G1207000' => 'mdo', 'MD13G1207100' => 'mdo', 'MD16G1208600' => 'mdo', 'Medtr1g050352' => 'mtr', 'Medtr1g070385' => 'mtr', 'Medtr1g070450' => 'mtr', 'Medtr1g075200' => 'mtr', 'Medtr1g075250' => 'mtr', 'Medtr1g075260' => 'mtr', 'Medtr1g475250' => 'mtr', 'Medtr4g075450' => 'mtr', 'Medtr7g096300' => 'mtr', 'Medtr8g105110' => 'mtr', 'MELO3C006470.2' => 'cme', 'MELO3C006471.2' => 'cme', 'MELO3C020772.2' => 'cme', 'MELO3C026780.2' => 'cme', 'MELO3C026781.2' => 'cme', 'Migut.D00390' => 'egut', 'Migut.G00435' => 'egut', 'Migut.G00436' => 'egut', 'Migut.G00718' => 'egut', 'MSTRG.21891' => 'ama', 'MSTRG.26910' => 'ama', 'MSTRG.4099' => 'ama', 'MSTRG.9925' => 'ama', 'Nitab4.5_0000165g0010' => 'nta', 'Nitab4.5_0000209g0180' => 'nta', 'Nitab4.5_0000244g0440' => 'nta', 'Nitab4.5_0000525g0220' => 'nta', 'Nitab4.5_0001597g0020' => 'nta', 'Nitab4.5_0001878g0040' => 'nta', 'Nitab4.5_0001878g0060' => 'nta', 'Nitab4.5_0002838g0100' => 'nta', 'Nitab4.5_0002838g0120' => 'nta', 'Nitab4.5_0004798g0030' => 'nta', 'Nitab4.5_0005420g0010' => 'nta', 'Nitab4.5_0005507g0010' => 'nta', 'Nitab4.5_0005574g0020' => 'nta', 'Nitab4.5_0005838g0010' => 'nta', 'Nitab4.5_0010580g0020' => 'nta', 'Nn1g02599' => 'nnu', 'Nn1g02608' => 'nnu', 'Nn3g17742' => 'nnu', 'Nn3g19534' => 'nnu', 'Nn3g19535' => 'nnu', 'Oeu008790.1' => 'oeu', 'Oeu008792.1' => 'oeu', 'Oeu032590.1' => 'oeu', 'Oeu035349.1' => 'oeu', 'Oeu049791.1' => 'oeu', 'Os01g0774500' => 'osa', 'Os03g0628800' => 'osa', 'Os03g0798600' => 'osa', 'Os05g0508800' => 'osa', 'Peaxi162Scf00036g02018' => 'pax', 'Peaxi162Scf00578g00032' => 'pax', 'Peaxi162Scf00578g00317' => 'pax', 'Peaxi162Scf00785g00114' => 'pax', 'Peaxi162Scf00813g00119' => 'pax', 'Peaxi162Scf00906g00227' => 'pax', 'PGR004G0875' => 'pgr', 'PGR004G2424' => 'pgr', 'PGR031G1239' => 'pgr', 'PGR031G2474' => 'pgr', 'PGR044G0423' => 'pgr', 'PGSC0003DMG400001128' => 'stu', 'PGSC0003DMG400007336' => 'stu', 'PGSC0003DMG400016318' => 'stu', 'PGSC0003DMG400016319' => 'stu', 'PGSC0003DMG400018074' => 'stu', 'Phvul.001G157700' => 'pvu', 'Phvul.002G148550' => 'pvu', 'Phvul.002G320200' => 'pvu', 'Phvul.003G089200' => 'pvu', 'Phvul.007G126000' => 'pvu', 'Phvul.007G126100' => 'pvu', 'Phvul.007G178000' => 'pvu', 'Phvul.007G178200' => 'pvu', 'Potri.002G043000' => 'ptr', 'Potri.002G043200' => 'ptr', 'Potri.003G123750' => 'ptr', 'Potri.005G055401' => 'ptr', 'Potri.005G219700' => 'ptr', 'Potri.005G220000' => 'ptr', 'Potri.008G161901' => 'ptr', 'Potri.008G162000' => 'ptr', 'Potri.008G162400' => 'ptr', 'Potri.010G076900' => 'ptr', 'Pp3c12_9180' => 'ppa', 'Pp3c13_19770' => 'ppa', 'Pp3c14_22950' => 'ppa', 'Pp3c16_12160' => 'ppa', 'Pp3c27_7820' => 'ppa', 'Pp3c2_3490' => 'ppa', 'Pp3c3_23700' => 'ppa', 'Pp3c3_36520' => 'ppa', 'Pp3c4_15250' => 'ppa', 'PRCOL_00007002' => 'pco', 'Prupe.1G030600' => 'ppe', 'Prupe.1G030700' => 'ppe', 'Prupe.6G345200' => 'ppe', 'Prupe.8G230300' => 'ppe', 'Prupe.8G230500' => 'ppe', 'Psat3g059600' => 'psa', 'Psat5g200920' => 'psa', 'Psat6g056440' => 'psa', 'Psat6g057360' => 'psa', 'Psat6g134120' => 'psa', 'Psat6g134160' => 'psa', 'Psat7g008640' => 'psa', 'Psat7g185240' => 'psa', 'PSO017G1330' => 'pso', 'PSO063G6097' => 'pso', 'PSO170G0835' => 'pso', 'PSO170G2499' => 'pso', 'PSO210G5058' => 'pso', 'PSO210G6154' => 'pso', 'PSO585G0031' => 'pso', 'PSO832G0264' => 'pso', 'PSO832G4288' => 'pso', 'QL03p027355' => 'qlo', 'QL03p027430' => 'qlo', 'QL04p081380' => 'qlo', 'QL06p015642' => 'qlo', 'QL06p015650' => 'qlo', 'QL06p015686' => 'qlo', 'QL12p042927' => 'qlo', 'QL93p1863_0035' => 'qlo', 'RcHm_v2.0_Chr3g0450581' => 'rch', 'RcHm_v2.0_Chr4g0390371' => 'rch', 'RcHm_v2.0_Chr4g0390381' => 'rch', 'RcHm_v2.0_Chr4g0390491' => 'rch', 'RcHm_v2.0_Chr4g0390501' => 'rch', 'RcHm_v2.0_Chr6g0289231' => 'rch', 'Rhsim04G0190400' => 'rsi', 'Rhsim04G0190500' => 'rsi', 'Rhsim04G0190600' => 'rsi', 'Rhsim13G0031400' => 'rsi', 'Rhsim13G0165600' => 'rsi', 'RhsimUnG0114600' => 'rsi', 'RhsimUnG0114700' => 'rsi', 'Sabra02G0034800' => 'sbr', 'Sabra02G0035100' => 'sbr', 'Sabra05G0168600' => 'sbr', 'Sabra05G0168800' => 'sbr', 'Sabra08G0123700' => 'sbr', 'Sabra10G0031900' => 'sbr', 'Sabra13G0039000' => 'sbr', 'SalBow2G0782' => 'sbo', 'SalBow2G1403' => 'sbo', 'SalBow4G0074' => 'sbo', 'SalBow4G2635' => 'sbo', 'SalBow5G3010' => 'sbo', 'Sc05g0000870' => 'sci', 'Sc05g0000890' => 'sci', 'Sc13g0005000' => 'sci', 'Sc13g0005030' => 'sci', 'Sc19g0003790' => 'sci', 'Sc19g0003800' => 'sci', 'Sed0003467' => 'sed', 'Sed0009355' => 'sed', 'Sed0009894' => 'sed', 'Sed0011972' => 'sed', 'Sed0021483' => 'sed', 'Sed0021750' => 'sed', 'Sed0026279' => 'sed', 'SEGI_05312' => 'sgi', 'SEGI_10112' => 'sgi', 'SEGI_15835' => 'sgi', 'SEGI_30386' => 'sgi', 'SEGI_34122' => 'sgi', 'SEGI_35063' => 'sgi', 'SGA_v2.0_scaffold101G29794' => 'sas', 'SGA_v2.0_scaffold1G00573' => 'sas', 'SGA_v2.0_scaffold79G25637' => 'sas', 'SGA_v2.0_scaffold88G27283' => 'sas', 'SGA_v2.0_scaffold88G27285' => 'sas', 'SGA_v2.0_scaffold88G27331' => 'sas', 'SHI09937' => 'shi', 'SMO119G0302' => 'smo', 'SMO137G0231' => 'smo', 'SMO367G1151' => 'smo', 'Solyc02g082000.3' => 'sly', 'Solyc06g031670.3' => 'sly', 'Solyc06g053810.3' => 'sly', 'Solyc07g025457.1' => 'sly', 'Solyc08g059740.1' => 'sly', 'Solyc08g059750.3' => 'sly', 'Solyc09g083370.3' => 'sly', 'Solyc12g038950.3' => 'sly', 'Sopen02g026630' => 'spe', 'Sopen06g018930' => 'spe', 'Sopen06g018940' => 'spe', 'Sopen08g009460' => 'spe', 'Sopen09g032290' => 'spe', 'Sp1g03080' => 'spa', 'Sp1g03090' => 'spa', 'Sp1g05480' => 'spa', 'Sp2g07860' => 'spa', 'Sp2g08430' => 'spa', 'Sp2g08440' => 'spa', 'Sp2g26200' => 'spa', 'Sp4g13170' => 'spa', 'Sp6g33840' => 'spa', 'SpUn1204_0010' => 'spa', 'TAR365G0908' => 'tar', 'TAR381G1270' => 'tar', 'TAR381G1651' => 'tar', 'TAR625G1131' => 'tar', 'TAR633G0962' => 'tar', 'TAR633G1729' => 'tar', 'TAR633G1864' => 'tar', 'TAR636G0221' => 'tar', 'TAR636G0314' => 'tar', 'TAR636G3202' => 'tar', 'THA.LOC104800805' => 'tha', 'THA.LOC104801096' => 'tha', 'THA.LOC104801555' => 'tha', 'THA.LOC104808491' => 'tha', 'THA.LOC104808595' => 'tha', 'THA.LOC104815985' => 'tha', 'THA.LOC104822250' => 'tha', 'THA.LOC104826071' => 'tha', 'Thecc.01G265200' => 'tca', 'Thecc.01G265300' => 'tca', 'Thecc.01G265700' => 'tca', 'Thecc.03G109100' => 'tca', 'Thecc.04G245900' => 'tca', 'Thecc.04G246000' => 'tca', 'Thhalv10003334m.g' => 'esa', 'Thhalv10005508m.g' => 'esa', 'Thhalv10005643m.g' => 'esa', 'Thhalv10007316m.g' => 'esa', 'Thhalv10009006m.g' => 'esa', 'Thhalv10009309m.g' => 'esa', 'Thhalv10014917m.g' => 'esa', 'Thhalv10014919m.g' => 'esa', 'Thhalv10015393m.g' => 'esa', 'Thhalv10016515m.g' => 'esa', 'Thhalv10029242m.g' => 'esa', 'TPR.G16654' => 'tpr', 'TPR.G20589' => 'tpr', 'TPR.G23029' => 'tpr', 'TPR.G27731' => 'tpr', 'TPR.G28889' => 'tpr', 'TPR.G28899' => 'tpr', 'TPR.G30846' => 'tpr', 'TPR.G5452' => 'tpr', 'TPR.G5713' => 'tpr', 'TPR.G9046' => 'tpr', 'TPR.G9061' => 'tpr', 'TWI09G1075' => 'twi', 'TWI12G0806' => 'twi', 'TWI18G0108' => 'twi', 'TWI53G1361' => 'twi', 'TWI73G0185' => 'twi', 'TWI73G0427' => 'twi', 'unitig_37.g12001' => 'ugi', 'unitig_747.g21660' => 'ugi', 'unitig_748.g7232' => 'ugi', 'unitig_748.g7315' => 'ugi', 'unitig_85.g27262' => 'ugi', 'unitig_92.g28220' => 'ugi', 'vmacro02632' => 'vma', 'vmacro08410' => 'vma', 'vmacro08411' => 'vma', 'vmacro15407' => 'vma', 'VMungo0251G3619' => 'vmu', 'VMungo0720G1204' => 'vmu', 'VMungo0720G1918' => 'vmu', 'VMungo0720G2387' => 'vmu', 'VMungo0720G2961' => 'vmu', 'VMungo1215G2154' => 'vmu', 'VMungo1383G2411' => 'vmu', 'Zm00001eb051130' => 'zma', 'Zm00001eb116830' => 'zma', 'Zm00001eb116850' => 'zma', 'Zm00001eb151740' => 'zma', 'Zm00001eb292360' => 'zma', 'Zm00001eb301640' => 'zma' ), 'gf_id' => 'HOM05D000856', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000856' ), 'data_identifier' => 'HOM05D000856', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000856', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p00010' => 'bna', 'A03p04160' => 'bna', 'A03p17160' => 'bna', 'A04p23370' => 'bna', 'A05p14860' => 'bna', 'A08p37020' => 'bna', 'A09p08050' => 'bna', 'A09p66800' => 'bna', 'A09p67940' => 'bna', 'A10p02680' => 'bna', 'A10p05320' => 'bna', 'Aa31LG1G20560' => 'aar', 'Aa31LG1G20610' => 'aar', 'Aa31LG1G7810' => 'aar', 'Aa31LG5G3590' => 'aar', 'Aa31LG5G6140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3819' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4683' => 'aag', 'Actinidia04480' => 'ach', 'Actinidia05466' => 'ach', 'Actinidia08445' => 'ach', 'Actinidia21170' => 'ach', 'Actinidia24812' => 'ach', 'Actinidia24951' => 'ach', 'Actinidia40088' => 'ach', 'Ah.02g111660' => 'amhyb', 'Ah.11g048900' => 'amhyb', 'Ah.11g049910' => 'amhyb', 'AL1G13870' => 'aly', 'AL1G13880' => 'aly', 'AL1G16760' => 'aly', 'AL390U10020' => 'aly', 'AL4G25520' => 'aly', 'AL6G19890' => 'aly', 'AL6G19900' => 'aly', 'AL6G19910' => 'aly', 'AL8G40100' => 'aly', 'Aqoxy2G03562' => 'aox', 'Aqoxy5G00316' => 'aox', 'Aqoxy5G00926' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1628KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1H403S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2FU6SJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.882I6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8YRY2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YN1SN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AF70II' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZA8L1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F916KL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHRD8H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KTZ8QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S22EMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8M29T' => 'arhy', 'AT1G04270' => 'ath', 'AT1G04280' => 'ath', 'AT1G06750' => 'ath', 'AT1G33850' => 'ath', 'AT2G30630' => 'ath', 'AT5G09490' => 'ath', 'AT5G09500' => 'ath', 'AT5G09510' => 'ath', 'AT5G43640' => 'ath', 'AT5G63070' => 'ath', 'ATR0605G315' => 'atr', 'Atru.chr11.175' => 'acertr', 'Atru.chr11.653' => 'acertr', 'Atru.chr3.1616' => 'acertr', 'Atru.chr4.2230' => 'acertr', 'Atru.chr4.2232' => 'acertr', 'Atru.chr5.1598' => 'acertr', 'Atru.chr5.1600' => 'acertr', 'Atru.chr5.2188' => 'acertr', 'AUR62008326' => 'cqu', 'AUR62011922' => 'cqu', 'AUR62011924' => 'cqu', 'AUR62021771' => 'cqu', 'AUR62032237' => 'cqu', 'AUR62032240' => 'cqu', 'BcaB01g05572' => 'bca', 'BcaB02g10337' => 'bca', 'BcaB04g19944' => 'bca', 'BcaB05g21548' => 'bca', 'BcaB05g21549' => 'bca', 'BcaB05g23227' => 'bca', 'BcaB06g26256' => 'bca', 'BcaB06g26257' => 'bca', 'BcaB06g28379' => 'bca', 'BcaC02g11159' => 'bca', 'BcaC03g13258' => 'bca', 'BcaC03g13259' => 'bca', 'BcaC05g24456' => 'bca', 'BcaC05g24457' => 'bca', 'BcaC07g36922' => 'bca', 'BcaC07g36923' => 'bca', 'BcaC07g42050' => 'bca', 'BcaC07g42176' => 'bca', 'BcaC07g42195' => 'bca', 'BcaC07g42196' => 'bca', 'BcaNung06674' => 'bca', 'BolC2t06351H' => 'bol', 'BolC2t06352H' => 'bol', 'BolC3t12993H' => 'bol', 'BolC4t23525H' => 'bol', 'BolC4t27475H' => 'bol', 'BolC5t29025H' => 'bol', 'BolC5t29026H' => 'bol', 'BolC8t46898H' => 'bol', 'BolC8t46899H' => 'bol', 'BolC8t52630H' => 'bol', 'BolC8t52765H' => 'bol', 'BolC9t53824H' => 'bol', 'BraA03t09760Z' => 'bra', 'BraA03t10990Z' => 'bra', 'BraA05t20413Z' => 'bra', 'BraA08t35602Z' => 'bra', 'BraA09t36458Z' => 'bra', 'BraA09t42018Z' => 'bra', 'BraA09t42129Z' => 'bra', 'BraA10t42536Z' => 'bra', 'BraA10t42537Z' => 'bra', 'C01p10690' => 'bna', 'C02p03890' => 'bna', 'C02p03900' => 'bna', 'C03p04620' => 'bna', 'C04p19870' => 'bna', 'C04p59670' => 'bna', 'C05p02460' => 'bna', 'C05p02470' => 'bna', 'C08p00980' => 'bna', 'C08p00990' => 'bna', 'C08p51030' => 'bna', 'C08p52360' => 'bna', 'C09p09120' => 'bna', 'CAN.G19.15' => 'can', 'CAN.G251.10' => 'can', 'CAN.G251.9' => 'can', 'CAN.G398.24' => 'can', 'CAN.G410.32' => 'can', 'CAN.G881.2' => 'can', 'CANSAT01G3025' => 'cansat', 'CANSAT78G1211' => 'cansat', 'CANSAT78G1218' => 'cansat', 'CANSAT78G1521' => 'cansat', 'CANSAT78G1670' => 'cansat', 'CARHR003600' => 'chi', 'CARHR003610' => 'chi', 'CARHR006290' => 'chi', 'CARHR006430' => 'chi', 'CARHR124110' => 'chi', 'CARHR203870' => 'chi', 'CARHR203880' => 'chi', 'CARHR203890' => 'chi', 'CARHR276880' => 'chi', 'Carub.0001s0346' => 'cru', 'Carub.0001s0347' => 'cru', 'Carub.0001s0607' => 'cru', 'Carub.0003s2768' => 'cru', 'Carub.0003s2769' => 'cru', 'Carub.0004s1178' => 'cru', 'Carub.0006s0806' => 'cru', 'Carub.0006s0807' => 'cru', 'Carub.0006s0808' => 'cru', 'Carub.0008s0501' => 'cru', 'Carub.0008s2379' => 'cru', 'Ca_08655_v3' => 'car', 'Ca_08922_v3' => 'car', 'Ca_08923_v3' => 'car', 'Ca_09119_v3' => 'car', 'Ca_09703_v3' => 'car', 'Ca_09705_v3' => 'car', 'Ca_09835_v3' => 'car', 'Ca_26403_v3' => 'car', 'Ca_30719_v3' => 'car', 'CBR_g17958' => 'cbr', 'CBR_g40516' => 'cbr', 'Cc00_g05350' => 'ccan', 'Cc01_g18690' => 'ccan', 'Cc03_g04830' => 'ccan', 'Cc03_g04850' => 'ccan', 'CDE02G4469' => 'cde', 'CDE06G0883' => 'cde', 'CDE06G1295' => 'cde', 'CDE06G1390' => 'cde', 'CDE07G0584' => 'cde', 'CDE07G1084' => 'cde', 'CDE08G1259' => 'cde', 'Cfa002341' => 'cfa', 'Cfa024337' => 'cfa', 'Ciclev10004749m.g' => 'ccl', 'Ciclev10006127m.g' => 'ccl', 'Ciclev10019720m.g' => 'ccl', 'Ciclev10022652m.g' => 'ccl', 'CiPaw.01G190400' => 'cil', 'CiPaw.01G190500' => 'cil', 'CiPaw.02G116400' => 'cil', 'CiPaw.02G116500' => 'cil', 'CiPaw.04G183000' => 'cil', 'CiPaw.04G183300' => 'cil', 'ClCG05G004610' => 'cla', 'ClCG05G004620' => 'cla', 'ClCG06G006730' => 'cla', 'ClCG06G006740' => 'cla', 'ClCG11G003690' => 'cla', 'COL.COLO4_08276' => 'col', 'COL.COLO4_08277' => 'col', 'COL.COLO4_15787' => 'col', 'COL.COLO4_15789' => 'col', 'Cpa.g.c44815' => 'cpa', 'Cpa.g.sc52.144' => 'cpa', 'Cpa.g.sc58.46' => 'cpa', 'Cpa.g.sc58.47' => 'cpa', 'Cre08.g360900' => 'cre', 'CsaV3_2G013030' => 'csa', 'CsaV3_2G013050' => 'csa', 'CsaV3_2G015620' => 'csa', 'CsaV3_3G012590' => 'csa', 'CsaV3_3G012600' => 'csa', 'CSS0001641' => 'camsi', 'CSS0008310' => 'camsi', 'CSS0013011' => 'camsi', 'CSS0017147' => 'camsi', 'CSS0022970' => 'camsi', 'CSS0025655' => 'camsi', 'CSS0028665' => 'camsi', 'CSS0029117' => 'camsi', 'CSS0032024' => 'camsi', 'CSS0039681' => 'camsi', 'CSS0046516' => 'camsi', 'CSS0050307' => 'camsi', 'DCAR_005871' => 'dca', 'DCAR_007342' => 'dca', 'DCAR_024228' => 'dca', 'DCAR_027277' => 'dca', 'DCAR_030718' => 'dca', 'Dinv20287' => 'din', 'Dinv22461' => 'din', 'Dinv22464' => 'din', 'Dinv29912' => 'din', 'Dinv29913' => 'din', 'Dinv34580' => 'din', 'Dinv34582' => 'din', 'Dinv44632' => 'din', 'Duzib052G0266' => 'dzi', 'Duzib133G0907' => 'dzi', 'Duzib133G1034' => 'dzi', 'Duzib138G0207' => 'dzi', 'Duzib138G0491' => 'dzi', 'Duzib151G0812' => 'dzi', 'Duzib151G1166' => 'dzi', 'Duzib168G0192' => 'dzi', 'Duzib211G0077' => 'dzi', 'Duzib212G0429' => 'dzi', 'Duzib212G0472' => 'dzi', 'ECA233G2617' => 'eca', 'ECA236G4188' => 'eca', 'ECA240G0936' => 'eca', 'ECA240G1129' => 'eca', 'ECA247G0623' => 'eca', 'EL10Ac5g10451' => 'bvu', 'EL10Ac5g10453' => 'bvu', 'EL10Ac5g10894' => 'bvu', 'Eucgr.H00192' => 'egr', 'Eucgr.H00193' => 'egr', 'Eucgr.H00194' => 'egr', 'Eucgr.J01562' => 'egr', 'Eucgr.K03301' => 'egr', 'FAN02G0632' => 'fan', 'FAN05G5378' => 'fan', 'FAN09G3247' => 'fan', 'FAN12G0435' => 'fan', 'FAN12G2426' => 'fan', 'FAN14G1707' => 'fan', 'FAN14G4725' => 'fan', 'FAN15G2071' => 'fan', 'FAN17G3065' => 'fan', 'FAN19G1376' => 'fan', 'FAN20G0354' => 'fan', 'FAN20G2429' => 'fan', 'FAN20G2658' => 'fan', 'FAN24G2343' => 'fan', 'FAN27G2362' => 'fan', 'FAN28G1765' => 'fan', 'FvH4_1g16020' => 'fve', 'FvH4_2g04890' => 'fve', 'FvH4_2g22270' => 'fve', 'FvH4_4g02630' => 'fve', 'FvH4_4g02640' => 'fve', 'FvH4_6g02650' => 'fve', 'Glyma.02G140600' => 'gma', 'Glyma.03G159900' => 'gma', 'Glyma.05G234800' => 'gma', 'Glyma.07G269600' => 'gma', 'Glyma.08G042300' => 'gma', 'Glyma.10G033500' => 'gma', 'Glyma.10G185200' => 'gma', 'Glyma.17G004300' => 'gma', 'Glyma.19G161900' => 'gma', 'Glyma.20G205100' => 'gma', 'Glyma.20G205200' => 'gma', 'Gohir.A01G139101' => 'ghi', 'Gohir.A02G035600' => 'ghi', 'Gohir.A02G117901' => 'ghi', 'Gohir.A07G210100' => 'ghi', 'Gohir.A07G210200' => 'ghi', 'Gohir.A08G061100' => 'ghi', 'Gohir.A09G223000' => 'ghi', 'Gohir.A09G223100' => 'ghi', 'Gohir.A10G113900' => 'ghi', 'Gohir.A10G114000' => 'ghi', 'Gohir.D02G042300' => 'ghi', 'Gohir.D07G216100' => 'ghi', 'Gohir.D07G216200' => 'ghi', 'Gohir.D08G070400' => 'ghi', 'Gohir.D09G225000' => 'ghi', 'Gohir.D09G225100' => 'ghi', 'Gohir.D10G152300' => 'ghi', 'Gohir.D10G153200' => 'ghi', 'Gohir.D11G133701' => 'ghi', 'Gorai.004G074100' => 'gra', 'Gorai.005G046800' => 'gra', 'Gorai.006G246500' => 'gra', 'Gorai.006G246600' => 'gra', 'Gorai.007G142900' => 'gra', 'Gorai.011G171000' => 'gra', 'Gorai.011G171100' => 'gra', 'Gorai.013G104300' => 'gra', 'Gorai.013G104400' => 'gra', 'GSVIVG01000754001' => 'vvi', 'GSVIVG01000756001' => 'vvi', 'GSVIVG01010903001' => 'vvi', 'GSVIVG01017623001' => 'vvi', 'GSVIVG01018113001' => 'vvi', 'GSVIVG01018116001' => 'vvi', 'GSVIVG01018118001' => 'vvi', 'HanXRQChr03g0076211' => 'han', 'HanXRQChr03g0092431' => 'han', 'HanXRQChr03g0092441' => 'han', 'HanXRQChr03g0092591' => 'han', 'HanXRQChr03g0092671' => 'han', 'HanXRQChr03g0092681' => 'han', 'HanXRQChr03g0092691' => 'han', 'HanXRQChr03g0092701' => 'han', 'HanXRQChr03g0092721' => 'han', 'HanXRQChr03g0092731' => 'han', 'HanXRQChr04g0113681' => 'han', 'HanXRQChr10g0281371' => 'han', 'HanXRQChr11g0337141' => 'han', 'HanXRQChr13g0424521' => 'han', 'HanXRQChr13g0424531' => 'han', 'HanXRQChr13g0424541' => 'han', 'HanXRQChr16g0498221' => 'han', 'Haze_04377' => 'cav', 'Haze_11298' => 'cav', 'Haze_24547' => 'cav', 'Haze_24550' => 'cav', 'Haze_26587' => 'cav', 'Hma1.2p1_0650F.1_g195410' => 'hma', 'Hma1.2p1_0893F.1_g233470' => 'hma', 'HPP92_006508' => 'vpl', 'HPP92_024780' => 'vpl', 'Hund02688' => 'sun', 'Hund09380' => 'sun', 'Hund09381' => 'sun', 'Hund09832' => 'sun', 'Hund09833' => 'sun', 'Hund11351' => 'sun', 'Hund11513' => 'sun', 'Lalb_Chr06g0162591' => 'lal', 'Lalb_Chr06g0162601' => 'lal', 'Lalb_Chr06g0169321' => 'lal', 'Lalb_Chr09g0330951' => 'lal', 'Lalb_Chr16g0387631' => 'lal', 'Lalb_Chr21g0306241' => 'lal', 'Lalb_Chr25g0290051' => 'lal', 'Lalb_Chr25g0290061' => 'lal', 'Lalb_Chr25g0290071' => 'lal', 'Lj1g0003876' => 'lja', 'Lj1P1207T36' => 'lonja', 'Lj2C1156G12' => 'lonja', 'Lj3A793G39' => 'lonja', 'Lj3C580G2' => 'lonja', 'Lj3C780G2' => 'lonja', 'Lj3C780T4' => 'lonja', 'Lj3C793G9' => 'lonja', 'Lj4g0012960' => 'lja', 'Lj5g0021252' => 'lja', 'Lj5g0021484' => 'lja', 'Lj5g0024528' => 'lja', 'Lj6A399T12' => 'lonja', 'Lj6A656G65' => 'lonja', 'Lsat_1_v5_gn_3_125500' => 'lsa', 'Lsat_1_v5_gn_3_125540' => 'lsa', 'Lsat_1_v5_gn_5_72701' => 'lsa', 'Lsat_1_v5_gn_8_91560' => 'lsa', 'Lsat_1_v5_gn_9_9640' => 'lsa', 'Manes.01G200600' => 'mes', 'Manes.01G200700' => 'mes', 'Manes.03G168900' => 'mes', 'Manes.03G169000' => 'mes', 'Manes.05G085801' => 'mes', 'Manes.05G086200' => 'mes', 'Manes.15G036700' => 'mes', 'Manes.15G036900' => 'mes', 'Mapoly0004s0172' => 'mpo', 'Mapoly0023s0001' => 'mpo', 'Mapoly0142s0012' => 'mpo', 'MBI01_g32854_MAGBIO' => 'mbi', 'MBI11_g24427_MAGBIO' => 'mbi', 'MBI11_g47319_MAGBIO' => 'mbi', 'MCO01G433' => 'mco', 'MD00G1187800' => 'mdo', 'MD04G1226500' => 'mdo', 'MD05G1203900' => 'mdo', 'MD10G1191100' => 'mdo', 'MD12G1243500' => 'mdo', 'MD13G1207000' => 'mdo', 'MD13G1207100' => 'mdo', 'MD16G1208600' => 'mdo', 'Medtr1g050352' => 'mtr', 'Medtr1g070385' => 'mtr', 'Medtr1g070450' => 'mtr', 'Medtr1g075200' => 'mtr', 'Medtr1g075250' => 'mtr', 'Medtr1g075260' => 'mtr', 'Medtr1g475250' => 'mtr', 'Medtr4g075450' => 'mtr', 'Medtr7g096300' => 'mtr', 'Medtr8g105110' => 'mtr', 'MELO3C006470.2' => 'cme', 'MELO3C006471.2' => 'cme', 'MELO3C020772.2' => 'cme', 'MELO3C026780.2' => 'cme', 'MELO3C026781.2' => 'cme', 'Migut.D00390' => 'egut', 'Migut.G00435' => 'egut', 'Migut.G00436' => 'egut', 'Migut.G00718' => 'egut', 'MSTRG.21891' => 'ama', 'MSTRG.26910' => 'ama', 'MSTRG.4099' => 'ama', 'MSTRG.9925' => 'ama', 'Nitab4.5_0000165g0010' => 'nta', 'Nitab4.5_0000209g0180' => 'nta', 'Nitab4.5_0000244g0440' => 'nta', 'Nitab4.5_0000525g0220' => 'nta', 'Nitab4.5_0001597g0020' => 'nta', 'Nitab4.5_0001878g0040' => 'nta', 'Nitab4.5_0001878g0060' => 'nta', 'Nitab4.5_0002838g0100' => 'nta', 'Nitab4.5_0002838g0120' => 'nta', 'Nitab4.5_0004798g0030' => 'nta', 'Nitab4.5_0005420g0010' => 'nta', 'Nitab4.5_0005507g0010' => 'nta', 'Nitab4.5_0005574g0020' => 'nta', 'Nitab4.5_0005838g0010' => 'nta', 'Nitab4.5_0010580g0020' => 'nta', 'Nn1g02599' => 'nnu', 'Nn1g02608' => 'nnu', 'Nn3g17742' => 'nnu', 'Nn3g19534' => 'nnu', 'Nn3g19535' => 'nnu', 'Oeu008790.1' => 'oeu', 'Oeu008792.1' => 'oeu', 'Oeu032590.1' => 'oeu', 'Oeu035349.1' => 'oeu', 'Oeu049791.1' => 'oeu', 'Os01g0774500' => 'osa', 'Os03g0628800' => 'osa', 'Os03g0798600' => 'osa', 'Os05g0508800' => 'osa', 'Peaxi162Scf00036g02018' => 'pax', 'Peaxi162Scf00578g00032' => 'pax', 'Peaxi162Scf00578g00317' => 'pax', 'Peaxi162Scf00785g00114' => 'pax', 'Peaxi162Scf00813g00119' => 'pax', 'Peaxi162Scf00906g00227' => 'pax', 'PGR004G0875' => 'pgr', 'PGR004G2424' => 'pgr', 'PGR031G1239' => 'pgr', 'PGR031G2474' => 'pgr', 'PGR044G0423' => 'pgr', 'PGSC0003DMG400001128' => 'stu', 'PGSC0003DMG400007336' => 'stu', 'PGSC0003DMG400016318' => 'stu', 'PGSC0003DMG400016319' => 'stu', 'PGSC0003DMG400018074' => 'stu', 'Phvul.001G157700' => 'pvu', 'Phvul.002G148550' => 'pvu', 'Phvul.002G320200' => 'pvu', 'Phvul.003G089200' => 'pvu', 'Phvul.007G126000' => 'pvu', 'Phvul.007G126100' => 'pvu', 'Phvul.007G178000' => 'pvu', 'Phvul.007G178200' => 'pvu', 'Potri.002G043000' => 'ptr', 'Potri.002G043200' => 'ptr', 'Potri.003G123750' => 'ptr', 'Potri.005G055401' => 'ptr', 'Potri.005G219700' => 'ptr', 'Potri.005G220000' => 'ptr', 'Potri.008G161901' => 'ptr', 'Potri.008G162000' => 'ptr', 'Potri.008G162400' => 'ptr', 'Potri.010G076900' => 'ptr', 'Pp3c12_9180' => 'ppa', 'Pp3c13_19770' => 'ppa', 'Pp3c14_22950' => 'ppa', 'Pp3c16_12160' => 'ppa', 'Pp3c27_7820' => 'ppa', 'Pp3c2_3490' => 'ppa', 'Pp3c3_23700' => 'ppa', 'Pp3c3_36520' => 'ppa', 'Pp3c4_15250' => 'ppa', 'PRCOL_00007002' => 'pco', 'Prupe.1G030600' => 'ppe', 'Prupe.1G030700' => 'ppe', 'Prupe.6G345200' => 'ppe', 'Prupe.8G230300' => 'ppe', 'Prupe.8G230500' => 'ppe', 'Psat3g059600' => 'psa', 'Psat5g200920' => 'psa', 'Psat6g056440' => 'psa', 'Psat6g057360' => 'psa', 'Psat6g134120' => 'psa', 'Psat6g134160' => 'psa', 'Psat7g008640' => 'psa', 'Psat7g185240' => 'psa', 'PSO017G1330' => 'pso', 'PSO063G6097' => 'pso', 'PSO170G0835' => 'pso', 'PSO170G2499' => 'pso', 'PSO210G5058' => 'pso', 'PSO210G6154' => 'pso', 'PSO585G0031' => 'pso', 'PSO832G0264' => 'pso', 'PSO832G4288' => 'pso', 'QL03p027355' => 'qlo', 'QL03p027430' => 'qlo', 'QL04p081380' => 'qlo', 'QL06p015642' => 'qlo', 'QL06p015650' => 'qlo', 'QL06p015686' => 'qlo', 'QL12p042927' => 'qlo', 'QL93p1863_0035' => 'qlo', 'RcHm_v2.0_Chr3g0450581' => 'rch', 'RcHm_v2.0_Chr4g0390371' => 'rch', 'RcHm_v2.0_Chr4g0390381' => 'rch', 'RcHm_v2.0_Chr4g0390491' => 'rch', 'RcHm_v2.0_Chr4g0390501' => 'rch', 'RcHm_v2.0_Chr6g0289231' => 'rch', 'Rhsim04G0190400' => 'rsi', 'Rhsim04G0190500' => 'rsi', 'Rhsim04G0190600' => 'rsi', 'Rhsim13G0031400' => 'rsi', 'Rhsim13G0165600' => 'rsi', 'RhsimUnG0114600' => 'rsi', 'RhsimUnG0114700' => 'rsi', 'Sabra02G0034800' => 'sbr', 'Sabra02G0035100' => 'sbr', 'Sabra05G0168600' => 'sbr', 'Sabra05G0168800' => 'sbr', 'Sabra08G0123700' => 'sbr', 'Sabra10G0031900' => 'sbr', 'Sabra13G0039000' => 'sbr', 'SalBow2G0782' => 'sbo', 'SalBow2G1403' => 'sbo', 'SalBow4G0074' => 'sbo', 'SalBow4G2635' => 'sbo', 'SalBow5G3010' => 'sbo', 'Sc05g0000870' => 'sci', 'Sc05g0000890' => 'sci', 'Sc13g0005000' => 'sci', 'Sc13g0005030' => 'sci', 'Sc19g0003790' => 'sci', 'Sc19g0003800' => 'sci', 'Sed0003467' => 'sed', 'Sed0009355' => 'sed', 'Sed0009894' => 'sed', 'Sed0011972' => 'sed', 'Sed0021483' => 'sed', 'Sed0021750' => 'sed', 'Sed0026279' => 'sed', 'SEGI_05312' => 'sgi', 'SEGI_10112' => 'sgi', 'SEGI_15835' => 'sgi', 'SEGI_30386' => 'sgi', 'SEGI_34122' => 'sgi', 'SEGI_35063' => 'sgi', 'SGA_v2.0_scaffold101G29794' => 'sas', 'SGA_v2.0_scaffold1G00573' => 'sas', 'SGA_v2.0_scaffold79G25637' => 'sas', 'SGA_v2.0_scaffold88G27283' => 'sas', 'SGA_v2.0_scaffold88G27285' => 'sas', 'SGA_v2.0_scaffold88G27331' => 'sas', 'SHI09937' => 'shi', 'SMO119G0302' => 'smo', 'SMO137G0231' => 'smo', 'SMO367G1151' => 'smo', 'Solyc02g082000.3' => 'sly', 'Solyc06g031670.3' => 'sly', 'Solyc06g053810.3' => 'sly', 'Solyc07g025457.1' => 'sly', 'Solyc08g059740.1' => 'sly', 'Solyc08g059750.3' => 'sly', 'Solyc09g083370.3' => 'sly', 'Solyc12g038950.3' => 'sly', 'Sopen02g026630' => 'spe', 'Sopen06g018930' => 'spe', 'Sopen06g018940' => 'spe', 'Sopen08g009460' => 'spe', 'Sopen09g032290' => 'spe', 'Sp1g03080' => 'spa', 'Sp1g03090' => 'spa', 'Sp1g05480' => 'spa', 'Sp2g07860' => 'spa', 'Sp2g08430' => 'spa', 'Sp2g08440' => 'spa', 'Sp2g26200' => 'spa', 'Sp4g13170' => 'spa', 'Sp6g33840' => 'spa', 'SpUn1204_0010' => 'spa', 'TAR365G0908' => 'tar', 'TAR381G1270' => 'tar', 'TAR381G1651' => 'tar', 'TAR625G1131' => 'tar', 'TAR633G0962' => 'tar', 'TAR633G1729' => 'tar', 'TAR633G1864' => 'tar', 'TAR636G0221' => 'tar', 'TAR636G0314' => 'tar', 'TAR636G3202' => 'tar', 'THA.LOC104800805' => 'tha', 'THA.LOC104801096' => 'tha', 'THA.LOC104801555' => 'tha', 'THA.LOC104808491' => 'tha', 'THA.LOC104808595' => 'tha', 'THA.LOC104815985' => 'tha', 'THA.LOC104822250' => 'tha', 'THA.LOC104826071' => 'tha', 'Thecc.01G265200' => 'tca', 'Thecc.01G265300' => 'tca', 'Thecc.01G265700' => 'tca', 'Thecc.03G109100' => 'tca', 'Thecc.04G245900' => 'tca', 'Thecc.04G246000' => 'tca', 'Thhalv10003334m.g' => 'esa', 'Thhalv10005508m.g' => 'esa', 'Thhalv10005643m.g' => 'esa', 'Thhalv10007316m.g' => 'esa', 'Thhalv10009006m.g' => 'esa', 'Thhalv10009309m.g' => 'esa', 'Thhalv10014917m.g' => 'esa', 'Thhalv10014919m.g' => 'esa', 'Thhalv10015393m.g' => 'esa', 'Thhalv10016515m.g' => 'esa', 'Thhalv10029242m.g' => 'esa', 'TPR.G16654' => 'tpr', 'TPR.G20589' => 'tpr', 'TPR.G23029' => 'tpr', 'TPR.G27731' => 'tpr', 'TPR.G28889' => 'tpr', 'TPR.G28899' => 'tpr', 'TPR.G30846' => 'tpr', 'TPR.G5452' => 'tpr', 'TPR.G5713' => 'tpr', 'TPR.G9046' => 'tpr', 'TPR.G9061' => 'tpr', 'TWI09G1075' => 'twi', 'TWI12G0806' => 'twi', 'TWI18G0108' => 'twi', 'TWI53G1361' => 'twi', 'TWI73G0185' => 'twi', 'TWI73G0427' => 'twi', 'unitig_37.g12001' => 'ugi', 'unitig_747.g21660' => 'ugi', 'unitig_748.g7232' => 'ugi', 'unitig_748.g7315' => 'ugi', 'unitig_85.g27262' => 'ugi', 'unitig_92.g28220' => 'ugi', 'vmacro02632' => 'vma', 'vmacro08410' => 'vma', 'vmacro08411' => 'vma', 'vmacro15407' => 'vma', 'VMungo0251G3619' => 'vmu', 'VMungo0720G1204' => 'vmu', 'VMungo0720G1918' => 'vmu', 'VMungo0720G2387' => 'vmu', 'VMungo0720G2961' => 'vmu', 'VMungo1215G2154' => 'vmu', 'VMungo1383G2411' => 'vmu', 'Zm00001eb051130' => 'zma', 'Zm00001eb116830' => 'zma', 'Zm00001eb116850' => 'zma', 'Zm00001eb151740' => 'zma', 'Zm00001eb292360' => 'zma', 'Zm00001eb301640' => 'zma' ) $gf_id = 'HOM05D000856' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000856' ) $data_identifier = 'HOM05D000856' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 13, 'ath' => (int) 10, 'atr' => (int) 1, 'acertr' => (int) 8, 'cqu' => (int) 6, 'bca' => (int) 21, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 11, 'car' => (int) 9, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 8, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 5, 'fan' => (int) 16, 'fve' => (int) 6, 'gma' => (int) 11, 'ghi' => (int) 19, 'gra' => (int) 9, 'vvi' => (int) 7, 'han' => (int) 17, 'cav' => (int) 5, 'hma' => (int) 2, 'vpl' => (int) 2, 'sun' => (int) 7, 'lal' => (int) 9, 'lja' => (int) 5, 'lonja' => (int) 9, 'lsa' => (int) 5, 'mes' => (int) 8, 'mpo' => (int) 3, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 10, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 15, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 9, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 9, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 6, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 5, 'spa' => (int) 10, 'tar' => (int) 10, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 11, 'tpr' => (int) 11, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 4, 'vmu' => (int) 7, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb301640' $species_info = array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ) $local_species = 'twi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000856', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p00010' => 'bna', 'A03p04160' => 'bna', 'A03p17160' => 'bna', 'A04p23370' => 'bna', 'A05p14860' => 'bna', 'A08p37020' => 'bna', 'A09p08050' => 'bna', 'A09p66800' => 'bna', 'A09p67940' => 'bna', 'A10p02680' => 'bna', 'A10p05320' => 'bna', 'Aa31LG1G20560' => 'aar', 'Aa31LG1G20610' => 'aar', 'Aa31LG1G7810' => 'aar', 'Aa31LG5G3590' => 'aar', 'Aa31LG5G6140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3819' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4683' => 'aag', 'Actinidia04480' => 'ach', 'Actinidia05466' => 'ach', 'Actinidia08445' => 'ach', 'Actinidia21170' => 'ach', 'Actinidia24812' => 'ach', 'Actinidia24951' => 'ach', 'Actinidia40088' => 'ach', 'Ah.02g111660' => 'amhyb', 'Ah.11g048900' => 'amhyb', 'Ah.11g049910' => 'amhyb', 'AL1G13870' => 'aly', 'AL1G13880' => 'aly', 'AL1G16760' => 'aly', 'AL390U10020' => 'aly', 'AL4G25520' => 'aly', 'AL6G19890' => 'aly', 'AL6G19900' => 'aly', 'AL6G19910' => 'aly', 'AL8G40100' => 'aly', 'Aqoxy2G03562' => 'aox', 'Aqoxy5G00316' => 'aox', 'Aqoxy5G00926' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1628KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1H403S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2FU6SJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.882I6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8YRY2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YN1SN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AF70II' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZA8L1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F916KL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHRD8H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KTZ8QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S22EMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8M29T' => 'arhy', 'AT1G04270' => 'ath', 'AT1G04280' => 'ath', 'AT1G06750' => 'ath', 'AT1G33850' => 'ath', 'AT2G30630' => 'ath', 'AT5G09490' => 'ath', 'AT5G09500' => 'ath', 'AT5G09510' => 'ath', 'AT5G43640' => 'ath', 'AT5G63070' => 'ath', 'ATR0605G315' => 'atr', 'Atru.chr11.175' => 'acertr', 'Atru.chr11.653' => 'acertr', 'Atru.chr3.1616' => 'acertr', 'Atru.chr4.2230' => 'acertr', 'Atru.chr4.2232' => 'acertr', 'Atru.chr5.1598' => 'acertr', 'Atru.chr5.1600' => 'acertr', 'Atru.chr5.2188' => 'acertr', 'AUR62008326' => 'cqu', 'AUR62011922' => 'cqu', 'AUR62011924' => 'cqu', 'AUR62021771' => 'cqu', 'AUR62032237' => 'cqu', 'AUR62032240' => 'cqu', 'BcaB01g05572' => 'bca', 'BcaB02g10337' => 'bca', 'BcaB04g19944' => 'bca', 'BcaB05g21548' => 'bca', 'BcaB05g21549' => 'bca', 'BcaB05g23227' => 'bca', 'BcaB06g26256' => 'bca', 'BcaB06g26257' => 'bca', 'BcaB06g28379' => 'bca', 'BcaC02g11159' => 'bca', 'BcaC03g13258' => 'bca', 'BcaC03g13259' => 'bca', 'BcaC05g24456' => 'bca', 'BcaC05g24457' => 'bca', 'BcaC07g36922' => 'bca', 'BcaC07g36923' => 'bca', 'BcaC07g42050' => 'bca', 'BcaC07g42176' => 'bca', 'BcaC07g42195' => 'bca', 'BcaC07g42196' => 'bca', 'BcaNung06674' => 'bca', 'BolC2t06351H' => 'bol', 'BolC2t06352H' => 'bol', 'BolC3t12993H' => 'bol', 'BolC4t23525H' => 'bol', 'BolC4t27475H' => 'bol', 'BolC5t29025H' => 'bol', 'BolC5t29026H' => 'bol', 'BolC8t46898H' => 'bol', 'BolC8t46899H' => 'bol', 'BolC8t52630H' => 'bol', 'BolC8t52765H' => 'bol', 'BolC9t53824H' => 'bol', 'BraA03t09760Z' => 'bra', 'BraA03t10990Z' => 'bra', 'BraA05t20413Z' => 'bra', 'BraA08t35602Z' => 'bra', 'BraA09t36458Z' => 'bra', 'BraA09t42018Z' => 'bra', 'BraA09t42129Z' => 'bra', 'BraA10t42536Z' => 'bra', 'BraA10t42537Z' => 'bra', 'C01p10690' => 'bna', 'C02p03890' => 'bna', 'C02p03900' => 'bna', 'C03p04620' => 'bna', 'C04p19870' => 'bna', 'C04p59670' => 'bna', 'C05p02460' => 'bna', 'C05p02470' => 'bna', 'C08p00980' => 'bna', 'C08p00990' => 'bna', 'C08p51030' => 'bna', 'C08p52360' => 'bna', 'C09p09120' => 'bna', 'CAN.G19.15' => 'can', 'CAN.G251.10' => 'can', 'CAN.G251.9' => 'can', 'CAN.G398.24' => 'can', 'CAN.G410.32' => 'can', 'CAN.G881.2' => 'can', 'CANSAT01G3025' => 'cansat', 'CANSAT78G1211' => 'cansat', 'CANSAT78G1218' => 'cansat', 'CANSAT78G1521' => 'cansat', 'CANSAT78G1670' => 'cansat', 'CARHR003600' => 'chi', 'CARHR003610' => 'chi', 'CARHR006290' => 'chi', 'CARHR006430' => 'chi', 'CARHR124110' => 'chi', 'CARHR203870' => 'chi', 'CARHR203880' => 'chi', 'CARHR203890' => 'chi', 'CARHR276880' => 'chi', 'Carub.0001s0346' => 'cru', 'Carub.0001s0347' => 'cru', 'Carub.0001s0607' => 'cru', 'Carub.0003s2768' => 'cru', 'Carub.0003s2769' => 'cru', 'Carub.0004s1178' => 'cru', 'Carub.0006s0806' => 'cru', 'Carub.0006s0807' => 'cru', 'Carub.0006s0808' => 'cru', 'Carub.0008s0501' => 'cru', 'Carub.0008s2379' => 'cru', 'Ca_08655_v3' => 'car', 'Ca_08922_v3' => 'car', 'Ca_08923_v3' => 'car', 'Ca_09119_v3' => 'car', 'Ca_09703_v3' => 'car', 'Ca_09705_v3' => 'car', 'Ca_09835_v3' => 'car', 'Ca_26403_v3' => 'car', 'Ca_30719_v3' => 'car', 'CBR_g17958' => 'cbr', 'CBR_g40516' => 'cbr', 'Cc00_g05350' => 'ccan', 'Cc01_g18690' => 'ccan', 'Cc03_g04830' => 'ccan', 'Cc03_g04850' => 'ccan', 'CDE02G4469' => 'cde', 'CDE06G0883' => 'cde', 'CDE06G1295' => 'cde', 'CDE06G1390' => 'cde', 'CDE07G0584' => 'cde', 'CDE07G1084' => 'cde', 'CDE08G1259' => 'cde', 'Cfa002341' => 'cfa', 'Cfa024337' => 'cfa', 'Ciclev10004749m.g' => 'ccl', 'Ciclev10006127m.g' => 'ccl', 'Ciclev10019720m.g' => 'ccl', 'Ciclev10022652m.g' => 'ccl', 'CiPaw.01G190400' => 'cil', 'CiPaw.01G190500' => 'cil', 'CiPaw.02G116400' => 'cil', 'CiPaw.02G116500' => 'cil', 'CiPaw.04G183000' => 'cil', 'CiPaw.04G183300' => 'cil', 'ClCG05G004610' => 'cla', 'ClCG05G004620' => 'cla', 'ClCG06G006730' => 'cla', 'ClCG06G006740' => 'cla', 'ClCG11G003690' => 'cla', 'COL.COLO4_08276' => 'col', 'COL.COLO4_08277' => 'col', 'COL.COLO4_15787' => 'col', 'COL.COLO4_15789' => 'col', 'Cpa.g.c44815' => 'cpa', 'Cpa.g.sc52.144' => 'cpa', 'Cpa.g.sc58.46' => 'cpa', 'Cpa.g.sc58.47' => 'cpa', 'Cre08.g360900' => 'cre', 'CsaV3_2G013030' => 'csa', 'CsaV3_2G013050' => 'csa', 'CsaV3_2G015620' => 'csa', 'CsaV3_3G012590' => 'csa', 'CsaV3_3G012600' => 'csa', 'CSS0001641' => 'camsi', 'CSS0008310' => 'camsi', 'CSS0013011' => 'camsi', 'CSS0017147' => 'camsi', 'CSS0022970' => 'camsi', 'CSS0025655' => 'camsi', 'CSS0028665' => 'camsi', 'CSS0029117' => 'camsi', 'CSS0032024' => 'camsi', 'CSS0039681' => 'camsi', 'CSS0046516' => 'camsi', 'CSS0050307' => 'camsi', 'DCAR_005871' => 'dca', 'DCAR_007342' => 'dca', 'DCAR_024228' => 'dca', 'DCAR_027277' => 'dca', 'DCAR_030718' => 'dca', 'Dinv20287' => 'din', 'Dinv22461' => 'din', 'Dinv22464' => 'din', 'Dinv29912' => 'din', 'Dinv29913' => 'din', 'Dinv34580' => 'din', 'Dinv34582' => 'din', 'Dinv44632' => 'din', 'Duzib052G0266' => 'dzi', 'Duzib133G0907' => 'dzi', 'Duzib133G1034' => 'dzi', 'Duzib138G0207' => 'dzi', 'Duzib138G0491' => 'dzi', 'Duzib151G0812' => 'dzi', 'Duzib151G1166' => 'dzi', 'Duzib168G0192' => 'dzi', 'Duzib211G0077' => 'dzi', 'Duzib212G0429' => 'dzi', 'Duzib212G0472' => 'dzi', 'ECA233G2617' => 'eca', 'ECA236G4188' => 'eca', 'ECA240G0936' => 'eca', 'ECA240G1129' => 'eca', 'ECA247G0623' => 'eca', 'EL10Ac5g10451' => 'bvu', 'EL10Ac5g10453' => 'bvu', 'EL10Ac5g10894' => 'bvu', 'Eucgr.H00192' => 'egr', 'Eucgr.H00193' => 'egr', 'Eucgr.H00194' => 'egr', 'Eucgr.J01562' => 'egr', 'Eucgr.K03301' => 'egr', 'FAN02G0632' => 'fan', 'FAN05G5378' => 'fan', 'FAN09G3247' => 'fan', 'FAN12G0435' => 'fan', 'FAN12G2426' => 'fan', 'FAN14G1707' => 'fan', 'FAN14G4725' => 'fan', 'FAN15G2071' => 'fan', 'FAN17G3065' => 'fan', 'FAN19G1376' => 'fan', 'FAN20G0354' => 'fan', 'FAN20G2429' => 'fan', 'FAN20G2658' => 'fan', 'FAN24G2343' => 'fan', 'FAN27G2362' => 'fan', 'FAN28G1765' => 'fan', 'FvH4_1g16020' => 'fve', 'FvH4_2g04890' => 'fve', 'FvH4_2g22270' => 'fve', 'FvH4_4g02630' => 'fve', 'FvH4_4g02640' => 'fve', 'FvH4_6g02650' => 'fve', 'Glyma.02G140600' => 'gma', 'Glyma.03G159900' => 'gma', 'Glyma.05G234800' => 'gma', 'Glyma.07G269600' => 'gma', 'Glyma.08G042300' => 'gma', 'Glyma.10G033500' => 'gma', 'Glyma.10G185200' => 'gma', 'Glyma.17G004300' => 'gma', 'Glyma.19G161900' => 'gma', 'Glyma.20G205100' => 'gma', 'Glyma.20G205200' => 'gma', 'Gohir.A01G139101' => 'ghi', 'Gohir.A02G035600' => 'ghi', 'Gohir.A02G117901' => 'ghi', 'Gohir.A07G210100' => 'ghi', 'Gohir.A07G210200' => 'ghi', 'Gohir.A08G061100' => 'ghi', 'Gohir.A09G223000' => 'ghi', 'Gohir.A09G223100' => 'ghi', 'Gohir.A10G113900' => 'ghi', 'Gohir.A10G114000' => 'ghi', 'Gohir.D02G042300' => 'ghi', 'Gohir.D07G216100' => 'ghi', 'Gohir.D07G216200' => 'ghi', 'Gohir.D08G070400' => 'ghi', 'Gohir.D09G225000' => 'ghi', 'Gohir.D09G225100' => 'ghi', 'Gohir.D10G152300' => 'ghi', 'Gohir.D10G153200' => 'ghi', 'Gohir.D11G133701' => 'ghi', 'Gorai.004G074100' => 'gra', 'Gorai.005G046800' => 'gra', 'Gorai.006G246500' => 'gra', 'Gorai.006G246600' => 'gra', 'Gorai.007G142900' => 'gra', 'Gorai.011G171000' => 'gra', 'Gorai.011G171100' => 'gra', 'Gorai.013G104300' => 'gra', 'Gorai.013G104400' => 'gra', 'GSVIVG01000754001' => 'vvi', 'GSVIVG01000756001' => 'vvi', 'GSVIVG01010903001' => 'vvi', 'GSVIVG01017623001' => 'vvi', 'GSVIVG01018113001' => 'vvi', 'GSVIVG01018116001' => 'vvi', 'GSVIVG01018118001' => 'vvi', 'HanXRQChr03g0076211' => 'han', 'HanXRQChr03g0092431' => 'han', 'HanXRQChr03g0092441' => 'han', 'HanXRQChr03g0092591' => 'han', 'HanXRQChr03g0092671' => 'han', 'HanXRQChr03g0092681' => 'han', 'HanXRQChr03g0092691' => 'han', 'HanXRQChr03g0092701' => 'han', 'HanXRQChr03g0092721' => 'han', 'HanXRQChr03g0092731' => 'han', 'HanXRQChr04g0113681' => 'han', 'HanXRQChr10g0281371' => 'han', 'HanXRQChr11g0337141' => 'han', 'HanXRQChr13g0424521' => 'han', 'HanXRQChr13g0424531' => 'han', 'HanXRQChr13g0424541' => 'han', 'HanXRQChr16g0498221' => 'han', 'Haze_04377' => 'cav', 'Haze_11298' => 'cav', 'Haze_24547' => 'cav', 'Haze_24550' => 'cav', 'Haze_26587' => 'cav', 'Hma1.2p1_0650F.1_g195410' => 'hma', 'Hma1.2p1_0893F.1_g233470' => 'hma', 'HPP92_006508' => 'vpl', 'HPP92_024780' => 'vpl', 'Hund02688' => 'sun', 'Hund09380' => 'sun', 'Hund09381' => 'sun', 'Hund09832' => 'sun', 'Hund09833' => 'sun', 'Hund11351' => 'sun', 'Hund11513' => 'sun', 'Lalb_Chr06g0162591' => 'lal', 'Lalb_Chr06g0162601' => 'lal', 'Lalb_Chr06g0169321' => 'lal', 'Lalb_Chr09g0330951' => 'lal', 'Lalb_Chr16g0387631' => 'lal', 'Lalb_Chr21g0306241' => 'lal', 'Lalb_Chr25g0290051' => 'lal', 'Lalb_Chr25g0290061' => 'lal', 'Lalb_Chr25g0290071' => 'lal', 'Lj1g0003876' => 'lja', 'Lj1P1207T36' => 'lonja', 'Lj2C1156G12' => 'lonja', 'Lj3A793G39' => 'lonja', 'Lj3C580G2' => 'lonja', 'Lj3C780G2' => 'lonja', 'Lj3C780T4' => 'lonja', 'Lj3C793G9' => 'lonja', 'Lj4g0012960' => 'lja', 'Lj5g0021252' => 'lja', 'Lj5g0021484' => 'lja', 'Lj5g0024528' => 'lja', 'Lj6A399T12' => 'lonja', 'Lj6A656G65' => 'lonja', 'Lsat_1_v5_gn_3_125500' => 'lsa', 'Lsat_1_v5_gn_3_125540' => 'lsa', 'Lsat_1_v5_gn_5_72701' => 'lsa', 'Lsat_1_v5_gn_8_91560' => 'lsa', 'Lsat_1_v5_gn_9_9640' => 'lsa', 'Manes.01G200600' => 'mes', 'Manes.01G200700' => 'mes', 'Manes.03G168900' => 'mes', 'Manes.03G169000' => 'mes', 'Manes.05G085801' => 'mes', 'Manes.05G086200' => 'mes', 'Manes.15G036700' => 'mes', 'Manes.15G036900' => 'mes', 'Mapoly0004s0172' => 'mpo', 'Mapoly0023s0001' => 'mpo', 'Mapoly0142s0012' => 'mpo', 'MBI01_g32854_MAGBIO' => 'mbi', 'MBI11_g24427_MAGBIO' => 'mbi', 'MBI11_g47319_MAGBIO' => 'mbi', 'MCO01G433' => 'mco', 'MD00G1187800' => 'mdo', 'MD04G1226500' => 'mdo', 'MD05G1203900' => 'mdo', 'MD10G1191100' => 'mdo', 'MD12G1243500' => 'mdo', 'MD13G1207000' => 'mdo', 'MD13G1207100' => 'mdo', 'MD16G1208600' => 'mdo', 'Medtr1g050352' => 'mtr', 'Medtr1g070385' => 'mtr', 'Medtr1g070450' => 'mtr', 'Medtr1g075200' => 'mtr', 'Medtr1g075250' => 'mtr', 'Medtr1g075260' => 'mtr', 'Medtr1g475250' => 'mtr', 'Medtr4g075450' => 'mtr', 'Medtr7g096300' => 'mtr', 'Medtr8g105110' => 'mtr', 'MELO3C006470.2' => 'cme', 'MELO3C006471.2' => 'cme', 'MELO3C020772.2' => 'cme', 'MELO3C026780.2' => 'cme', 'MELO3C026781.2' => 'cme', 'Migut.D00390' => 'egut', 'Migut.G00435' => 'egut', 'Migut.G00436' => 'egut', 'Migut.G00718' => 'egut', 'MSTRG.21891' => 'ama', 'MSTRG.26910' => 'ama', 'MSTRG.4099' => 'ama', 'MSTRG.9925' => 'ama', 'Nitab4.5_0000165g0010' => 'nta', 'Nitab4.5_0000209g0180' => 'nta', 'Nitab4.5_0000244g0440' => 'nta', 'Nitab4.5_0000525g0220' => 'nta', 'Nitab4.5_0001597g0020' => 'nta', 'Nitab4.5_0001878g0040' => 'nta', 'Nitab4.5_0001878g0060' => 'nta', 'Nitab4.5_0002838g0100' => 'nta', 'Nitab4.5_0002838g0120' => 'nta', 'Nitab4.5_0004798g0030' => 'nta', 'Nitab4.5_0005420g0010' => 'nta', 'Nitab4.5_0005507g0010' => 'nta', 'Nitab4.5_0005574g0020' => 'nta', 'Nitab4.5_0005838g0010' => 'nta', 'Nitab4.5_0010580g0020' => 'nta', 'Nn1g02599' => 'nnu', 'Nn1g02608' => 'nnu', 'Nn3g17742' => 'nnu', 'Nn3g19534' => 'nnu', 'Nn3g19535' => 'nnu', 'Oeu008790.1' => 'oeu', 'Oeu008792.1' => 'oeu', 'Oeu032590.1' => 'oeu', 'Oeu035349.1' => 'oeu', 'Oeu049791.1' => 'oeu', 'Os01g0774500' => 'osa', 'Os03g0628800' => 'osa', 'Os03g0798600' => 'osa', 'Os05g0508800' => 'osa', 'Peaxi162Scf00036g02018' => 'pax', 'Peaxi162Scf00578g00032' => 'pax', 'Peaxi162Scf00578g00317' => 'pax', 'Peaxi162Scf00785g00114' => 'pax', 'Peaxi162Scf00813g00119' => 'pax', 'Peaxi162Scf00906g00227' => 'pax', 'PGR004G0875' => 'pgr', 'PGR004G2424' => 'pgr', 'PGR031G1239' => 'pgr', 'PGR031G2474' => 'pgr', 'PGR044G0423' => 'pgr', 'PGSC0003DMG400001128' => 'stu', 'PGSC0003DMG400007336' => 'stu', 'PGSC0003DMG400016318' => 'stu', 'PGSC0003DMG400016319' => 'stu', 'PGSC0003DMG400018074' => 'stu', 'Phvul.001G157700' => 'pvu', 'Phvul.002G148550' => 'pvu', 'Phvul.002G320200' => 'pvu', 'Phvul.003G089200' => 'pvu', 'Phvul.007G126000' => 'pvu', 'Phvul.007G126100' => 'pvu', 'Phvul.007G178000' => 'pvu', 'Phvul.007G178200' => 'pvu', 'Potri.002G043000' => 'ptr', 'Potri.002G043200' => 'ptr', 'Potri.003G123750' => 'ptr', 'Potri.005G055401' => 'ptr', 'Potri.005G219700' => 'ptr', 'Potri.005G220000' => 'ptr', 'Potri.008G161901' => 'ptr', 'Potri.008G162000' => 'ptr', 'Potri.008G162400' => 'ptr', 'Potri.010G076900' => 'ptr', 'Pp3c12_9180' => 'ppa', 'Pp3c13_19770' => 'ppa', 'Pp3c14_22950' => 'ppa', 'Pp3c16_12160' => 'ppa', 'Pp3c27_7820' => 'ppa', 'Pp3c2_3490' => 'ppa', 'Pp3c3_23700' => 'ppa', 'Pp3c3_36520' => 'ppa', 'Pp3c4_15250' => 'ppa', 'PRCOL_00007002' => 'pco', 'Prupe.1G030600' => 'ppe', 'Prupe.1G030700' => 'ppe', 'Prupe.6G345200' => 'ppe', 'Prupe.8G230300' => 'ppe', 'Prupe.8G230500' => 'ppe', 'Psat3g059600' => 'psa', 'Psat5g200920' => 'psa', 'Psat6g056440' => 'psa', 'Psat6g057360' => 'psa', 'Psat6g134120' => 'psa', 'Psat6g134160' => 'psa', 'Psat7g008640' => 'psa', 'Psat7g185240' => 'psa', 'PSO017G1330' => 'pso', 'PSO063G6097' => 'pso', 'PSO170G0835' => 'pso', 'PSO170G2499' => 'pso', 'PSO210G5058' => 'pso', 'PSO210G6154' => 'pso', 'PSO585G0031' => 'pso', 'PSO832G0264' => 'pso', 'PSO832G4288' => 'pso', 'QL03p027355' => 'qlo', 'QL03p027430' => 'qlo', 'QL04p081380' => 'qlo', 'QL06p015642' => 'qlo', 'QL06p015650' => 'qlo', 'QL06p015686' => 'qlo', 'QL12p042927' => 'qlo', 'QL93p1863_0035' => 'qlo', 'RcHm_v2.0_Chr3g0450581' => 'rch', 'RcHm_v2.0_Chr4g0390371' => 'rch', 'RcHm_v2.0_Chr4g0390381' => 'rch', 'RcHm_v2.0_Chr4g0390491' => 'rch', 'RcHm_v2.0_Chr4g0390501' => 'rch', 'RcHm_v2.0_Chr6g0289231' => 'rch', 'Rhsim04G0190400' => 'rsi', 'Rhsim04G0190500' => 'rsi', 'Rhsim04G0190600' => 'rsi', 'Rhsim13G0031400' => 'rsi', 'Rhsim13G0165600' => 'rsi', 'RhsimUnG0114600' => 'rsi', 'RhsimUnG0114700' => 'rsi', 'Sabra02G0034800' => 'sbr', 'Sabra02G0035100' => 'sbr', 'Sabra05G0168600' => 'sbr', 'Sabra05G0168800' => 'sbr', 'Sabra08G0123700' => 'sbr', 'Sabra10G0031900' => 'sbr', 'Sabra13G0039000' => 'sbr', 'SalBow2G0782' => 'sbo', 'SalBow2G1403' => 'sbo', 'SalBow4G0074' => 'sbo', 'SalBow4G2635' => 'sbo', 'SalBow5G3010' => 'sbo', 'Sc05g0000870' => 'sci', 'Sc05g0000890' => 'sci', 'Sc13g0005000' => 'sci', 'Sc13g0005030' => 'sci', 'Sc19g0003790' => 'sci', 'Sc19g0003800' => 'sci', 'Sed0003467' => 'sed', 'Sed0009355' => 'sed', 'Sed0009894' => 'sed', 'Sed0011972' => 'sed', 'Sed0021483' => 'sed', 'Sed0021750' => 'sed', 'Sed0026279' => 'sed', 'SEGI_05312' => 'sgi', 'SEGI_10112' => 'sgi', 'SEGI_15835' => 'sgi', 'SEGI_30386' => 'sgi', 'SEGI_34122' => 'sgi', 'SEGI_35063' => 'sgi', 'SGA_v2.0_scaffold101G29794' => 'sas', 'SGA_v2.0_scaffold1G00573' => 'sas', 'SGA_v2.0_scaffold79G25637' => 'sas', 'SGA_v2.0_scaffold88G27283' => 'sas', 'SGA_v2.0_scaffold88G27285' => 'sas', 'SGA_v2.0_scaffold88G27331' => 'sas', 'SHI09937' => 'shi', 'SMO119G0302' => 'smo', 'SMO137G0231' => 'smo', 'SMO367G1151' => 'smo', 'Solyc02g082000.3' => 'sly', 'Solyc06g031670.3' => 'sly', 'Solyc06g053810.3' => 'sly', 'Solyc07g025457.1' => 'sly', 'Solyc08g059740.1' => 'sly', 'Solyc08g059750.3' => 'sly', 'Solyc09g083370.3' => 'sly', 'Solyc12g038950.3' => 'sly', 'Sopen02g026630' => 'spe', 'Sopen06g018930' => 'spe', 'Sopen06g018940' => 'spe', 'Sopen08g009460' => 'spe', 'Sopen09g032290' => 'spe', 'Sp1g03080' => 'spa', 'Sp1g03090' => 'spa', 'Sp1g05480' => 'spa', 'Sp2g07860' => 'spa', 'Sp2g08430' => 'spa', 'Sp2g08440' => 'spa', 'Sp2g26200' => 'spa', 'Sp4g13170' => 'spa', 'Sp6g33840' => 'spa', 'SpUn1204_0010' => 'spa', 'TAR365G0908' => 'tar', 'TAR381G1270' => 'tar', 'TAR381G1651' => 'tar', 'TAR625G1131' => 'tar', 'TAR633G0962' => 'tar', 'TAR633G1729' => 'tar', 'TAR633G1864' => 'tar', 'TAR636G0221' => 'tar', 'TAR636G0314' => 'tar', 'TAR636G3202' => 'tar', 'THA.LOC104800805' => 'tha', 'THA.LOC104801096' => 'tha', 'THA.LOC104801555' => 'tha', 'THA.LOC104808491' => 'tha', 'THA.LOC104808595' => 'tha', 'THA.LOC104815985' => 'tha', 'THA.LOC104822250' => 'tha', 'THA.LOC104826071' => 'tha', 'Thecc.01G265200' => 'tca', 'Thecc.01G265300' => 'tca', 'Thecc.01G265700' => 'tca', 'Thecc.03G109100' => 'tca', 'Thecc.04G245900' => 'tca', 'Thecc.04G246000' => 'tca', 'Thhalv10003334m.g' => 'esa', 'Thhalv10005508m.g' => 'esa', 'Thhalv10005643m.g' => 'esa', 'Thhalv10007316m.g' => 'esa', 'Thhalv10009006m.g' => 'esa', 'Thhalv10009309m.g' => 'esa', 'Thhalv10014917m.g' => 'esa', 'Thhalv10014919m.g' => 'esa', 'Thhalv10015393m.g' => 'esa', 'Thhalv10016515m.g' => 'esa', 'Thhalv10029242m.g' => 'esa', 'TPR.G16654' => 'tpr', 'TPR.G20589' => 'tpr', 'TPR.G23029' => 'tpr', 'TPR.G27731' => 'tpr', 'TPR.G28889' => 'tpr', 'TPR.G28899' => 'tpr', 'TPR.G30846' => 'tpr', 'TPR.G5452' => 'tpr', 'TPR.G5713' => 'tpr', 'TPR.G9046' => 'tpr', 'TPR.G9061' => 'tpr', 'TWI09G1075' => 'twi', 'TWI12G0806' => 'twi', 'TWI18G0108' => 'twi', 'TWI53G1361' => 'twi', 'TWI73G0185' => 'twi', 'TWI73G0427' => 'twi', 'unitig_37.g12001' => 'ugi', 'unitig_747.g21660' => 'ugi', 'unitig_748.g7232' => 'ugi', 'unitig_748.g7315' => 'ugi', 'unitig_85.g27262' => 'ugi', 'unitig_92.g28220' => 'ugi', 'vmacro02632' => 'vma', 'vmacro08410' => 'vma', 'vmacro08411' => 'vma', 'vmacro15407' => 'vma', 'VMungo0251G3619' => 'vmu', 'VMungo0720G1204' => 'vmu', 'VMungo0720G1918' => 'vmu', 'VMungo0720G2387' => 'vmu', 'VMungo0720G2961' => 'vmu', 'VMungo1215G2154' => 'vmu', 'VMungo1383G2411' => 'vmu', 'Zm00001eb051130' => 'zma', 'Zm00001eb116830' => 'zma', 'Zm00001eb116850' => 'zma', 'Zm00001eb151740' => 'zma', 'Zm00001eb292360' => 'zma', 'Zm00001eb301640' => 'zma' ), 'gf_id' => 'HOM05D000856', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000856' ), 'data_identifier' => 'HOM05D000856', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000856', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p00010' => 'bna', 'A03p04160' => 'bna', 'A03p17160' => 'bna', 'A04p23370' => 'bna', 'A05p14860' => 'bna', 'A08p37020' => 'bna', 'A09p08050' => 'bna', 'A09p66800' => 'bna', 'A09p67940' => 'bna', 'A10p02680' => 'bna', 'A10p05320' => 'bna', 'Aa31LG1G20560' => 'aar', 'Aa31LG1G20610' => 'aar', 'Aa31LG1G7810' => 'aar', 'Aa31LG5G3590' => 'aar', 'Aa31LG5G6140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3819' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4683' => 'aag', 'Actinidia04480' => 'ach', 'Actinidia05466' => 'ach', 'Actinidia08445' => 'ach', 'Actinidia21170' => 'ach', 'Actinidia24812' => 'ach', 'Actinidia24951' => 'ach', 'Actinidia40088' => 'ach', 'Ah.02g111660' => 'amhyb', 'Ah.11g048900' => 'amhyb', 'Ah.11g049910' => 'amhyb', 'AL1G13870' => 'aly', 'AL1G13880' => 'aly', 'AL1G16760' => 'aly', 'AL390U10020' => 'aly', 'AL4G25520' => 'aly', 'AL6G19890' => 'aly', 'AL6G19900' => 'aly', 'AL6G19910' => 'aly', 'AL8G40100' => 'aly', 'Aqoxy2G03562' => 'aox', 'Aqoxy5G00316' => 'aox', 'Aqoxy5G00926' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1628KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1H403S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2FU6SJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.882I6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8YRY2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YN1SN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AF70II' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZA8L1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F916KL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHRD8H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KTZ8QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S22EMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8M29T' => 'arhy', 'AT1G04270' => 'ath', 'AT1G04280' => 'ath', 'AT1G06750' => 'ath', 'AT1G33850' => 'ath', 'AT2G30630' => 'ath', 'AT5G09490' => 'ath', 'AT5G09500' => 'ath', 'AT5G09510' => 'ath', 'AT5G43640' => 'ath', 'AT5G63070' => 'ath', 'ATR0605G315' => 'atr', 'Atru.chr11.175' => 'acertr', 'Atru.chr11.653' => 'acertr', 'Atru.chr3.1616' => 'acertr', 'Atru.chr4.2230' => 'acertr', 'Atru.chr4.2232' => 'acertr', 'Atru.chr5.1598' => 'acertr', 'Atru.chr5.1600' => 'acertr', 'Atru.chr5.2188' => 'acertr', 'AUR62008326' => 'cqu', 'AUR62011922' => 'cqu', 'AUR62011924' => 'cqu', 'AUR62021771' => 'cqu', 'AUR62032237' => 'cqu', 'AUR62032240' => 'cqu', 'BcaB01g05572' => 'bca', 'BcaB02g10337' => 'bca', 'BcaB04g19944' => 'bca', 'BcaB05g21548' => 'bca', 'BcaB05g21549' => 'bca', 'BcaB05g23227' => 'bca', 'BcaB06g26256' => 'bca', 'BcaB06g26257' => 'bca', 'BcaB06g28379' => 'bca', 'BcaC02g11159' => 'bca', 'BcaC03g13258' => 'bca', 'BcaC03g13259' => 'bca', 'BcaC05g24456' => 'bca', 'BcaC05g24457' => 'bca', 'BcaC07g36922' => 'bca', 'BcaC07g36923' => 'bca', 'BcaC07g42050' => 'bca', 'BcaC07g42176' => 'bca', 'BcaC07g42195' => 'bca', 'BcaC07g42196' => 'bca', 'BcaNung06674' => 'bca', 'BolC2t06351H' => 'bol', 'BolC2t06352H' => 'bol', 'BolC3t12993H' => 'bol', 'BolC4t23525H' => 'bol', 'BolC4t27475H' => 'bol', 'BolC5t29025H' => 'bol', 'BolC5t29026H' => 'bol', 'BolC8t46898H' => 'bol', 'BolC8t46899H' => 'bol', 'BolC8t52630H' => 'bol', 'BolC8t52765H' => 'bol', 'BolC9t53824H' => 'bol', 'BraA03t09760Z' => 'bra', 'BraA03t10990Z' => 'bra', 'BraA05t20413Z' => 'bra', 'BraA08t35602Z' => 'bra', 'BraA09t36458Z' => 'bra', 'BraA09t42018Z' => 'bra', 'BraA09t42129Z' => 'bra', 'BraA10t42536Z' => 'bra', 'BraA10t42537Z' => 'bra', 'C01p10690' => 'bna', 'C02p03890' => 'bna', 'C02p03900' => 'bna', 'C03p04620' => 'bna', 'C04p19870' => 'bna', 'C04p59670' => 'bna', 'C05p02460' => 'bna', 'C05p02470' => 'bna', 'C08p00980' => 'bna', 'C08p00990' => 'bna', 'C08p51030' => 'bna', 'C08p52360' => 'bna', 'C09p09120' => 'bna', 'CAN.G19.15' => 'can', 'CAN.G251.10' => 'can', 'CAN.G251.9' => 'can', 'CAN.G398.24' => 'can', 'CAN.G410.32' => 'can', 'CAN.G881.2' => 'can', 'CANSAT01G3025' => 'cansat', 'CANSAT78G1211' => 'cansat', 'CANSAT78G1218' => 'cansat', 'CANSAT78G1521' => 'cansat', 'CANSAT78G1670' => 'cansat', 'CARHR003600' => 'chi', 'CARHR003610' => 'chi', 'CARHR006290' => 'chi', 'CARHR006430' => 'chi', 'CARHR124110' => 'chi', 'CARHR203870' => 'chi', 'CARHR203880' => 'chi', 'CARHR203890' => 'chi', 'CARHR276880' => 'chi', 'Carub.0001s0346' => 'cru', 'Carub.0001s0347' => 'cru', 'Carub.0001s0607' => 'cru', 'Carub.0003s2768' => 'cru', 'Carub.0003s2769' => 'cru', 'Carub.0004s1178' => 'cru', 'Carub.0006s0806' => 'cru', 'Carub.0006s0807' => 'cru', 'Carub.0006s0808' => 'cru', 'Carub.0008s0501' => 'cru', 'Carub.0008s2379' => 'cru', 'Ca_08655_v3' => 'car', 'Ca_08922_v3' => 'car', 'Ca_08923_v3' => 'car', 'Ca_09119_v3' => 'car', 'Ca_09703_v3' => 'car', 'Ca_09705_v3' => 'car', 'Ca_09835_v3' => 'car', 'Ca_26403_v3' => 'car', 'Ca_30719_v3' => 'car', 'CBR_g17958' => 'cbr', 'CBR_g40516' => 'cbr', 'Cc00_g05350' => 'ccan', 'Cc01_g18690' => 'ccan', 'Cc03_g04830' => 'ccan', 'Cc03_g04850' => 'ccan', 'CDE02G4469' => 'cde', 'CDE06G0883' => 'cde', 'CDE06G1295' => 'cde', 'CDE06G1390' => 'cde', 'CDE07G0584' => 'cde', 'CDE07G1084' => 'cde', 'CDE08G1259' => 'cde', 'Cfa002341' => 'cfa', 'Cfa024337' => 'cfa', 'Ciclev10004749m.g' => 'ccl', 'Ciclev10006127m.g' => 'ccl', 'Ciclev10019720m.g' => 'ccl', 'Ciclev10022652m.g' => 'ccl', 'CiPaw.01G190400' => 'cil', 'CiPaw.01G190500' => 'cil', 'CiPaw.02G116400' => 'cil', 'CiPaw.02G116500' => 'cil', 'CiPaw.04G183000' => 'cil', 'CiPaw.04G183300' => 'cil', 'ClCG05G004610' => 'cla', 'ClCG05G004620' => 'cla', 'ClCG06G006730' => 'cla', 'ClCG06G006740' => 'cla', 'ClCG11G003690' => 'cla', 'COL.COLO4_08276' => 'col', 'COL.COLO4_08277' => 'col', 'COL.COLO4_15787' => 'col', 'COL.COLO4_15789' => 'col', 'Cpa.g.c44815' => 'cpa', 'Cpa.g.sc52.144' => 'cpa', 'Cpa.g.sc58.46' => 'cpa', 'Cpa.g.sc58.47' => 'cpa', 'Cre08.g360900' => 'cre', 'CsaV3_2G013030' => 'csa', 'CsaV3_2G013050' => 'csa', 'CsaV3_2G015620' => 'csa', 'CsaV3_3G012590' => 'csa', 'CsaV3_3G012600' => 'csa', 'CSS0001641' => 'camsi', 'CSS0008310' => 'camsi', 'CSS0013011' => 'camsi', 'CSS0017147' => 'camsi', 'CSS0022970' => 'camsi', 'CSS0025655' => 'camsi', 'CSS0028665' => 'camsi', 'CSS0029117' => 'camsi', 'CSS0032024' => 'camsi', 'CSS0039681' => 'camsi', 'CSS0046516' => 'camsi', 'CSS0050307' => 'camsi', 'DCAR_005871' => 'dca', 'DCAR_007342' => 'dca', 'DCAR_024228' => 'dca', 'DCAR_027277' => 'dca', 'DCAR_030718' => 'dca', 'Dinv20287' => 'din', 'Dinv22461' => 'din', 'Dinv22464' => 'din', 'Dinv29912' => 'din', 'Dinv29913' => 'din', 'Dinv34580' => 'din', 'Dinv34582' => 'din', 'Dinv44632' => 'din', 'Duzib052G0266' => 'dzi', 'Duzib133G0907' => 'dzi', 'Duzib133G1034' => 'dzi', 'Duzib138G0207' => 'dzi', 'Duzib138G0491' => 'dzi', 'Duzib151G0812' => 'dzi', 'Duzib151G1166' => 'dzi', 'Duzib168G0192' => 'dzi', 'Duzib211G0077' => 'dzi', 'Duzib212G0429' => 'dzi', 'Duzib212G0472' => 'dzi', 'ECA233G2617' => 'eca', 'ECA236G4188' => 'eca', 'ECA240G0936' => 'eca', 'ECA240G1129' => 'eca', 'ECA247G0623' => 'eca', 'EL10Ac5g10451' => 'bvu', 'EL10Ac5g10453' => 'bvu', 'EL10Ac5g10894' => 'bvu', 'Eucgr.H00192' => 'egr', 'Eucgr.H00193' => 'egr', 'Eucgr.H00194' => 'egr', 'Eucgr.J01562' => 'egr', 'Eucgr.K03301' => 'egr', 'FAN02G0632' => 'fan', 'FAN05G5378' => 'fan', 'FAN09G3247' => 'fan', 'FAN12G0435' => 'fan', 'FAN12G2426' => 'fan', 'FAN14G1707' => 'fan', 'FAN14G4725' => 'fan', 'FAN15G2071' => 'fan', 'FAN17G3065' => 'fan', 'FAN19G1376' => 'fan', 'FAN20G0354' => 'fan', 'FAN20G2429' => 'fan', 'FAN20G2658' => 'fan', 'FAN24G2343' => 'fan', 'FAN27G2362' => 'fan', 'FAN28G1765' => 'fan', 'FvH4_1g16020' => 'fve', 'FvH4_2g04890' => 'fve', 'FvH4_2g22270' => 'fve', 'FvH4_4g02630' => 'fve', 'FvH4_4g02640' => 'fve', 'FvH4_6g02650' => 'fve', 'Glyma.02G140600' => 'gma', 'Glyma.03G159900' => 'gma', 'Glyma.05G234800' => 'gma', 'Glyma.07G269600' => 'gma', 'Glyma.08G042300' => 'gma', 'Glyma.10G033500' => 'gma', 'Glyma.10G185200' => 'gma', 'Glyma.17G004300' => 'gma', 'Glyma.19G161900' => 'gma', 'Glyma.20G205100' => 'gma', 'Glyma.20G205200' => 'gma', 'Gohir.A01G139101' => 'ghi', 'Gohir.A02G035600' => 'ghi', 'Gohir.A02G117901' => 'ghi', 'Gohir.A07G210100' => 'ghi', 'Gohir.A07G210200' => 'ghi', 'Gohir.A08G061100' => 'ghi', 'Gohir.A09G223000' => 'ghi', 'Gohir.A09G223100' => 'ghi', 'Gohir.A10G113900' => 'ghi', 'Gohir.A10G114000' => 'ghi', 'Gohir.D02G042300' => 'ghi', 'Gohir.D07G216100' => 'ghi', 'Gohir.D07G216200' => 'ghi', 'Gohir.D08G070400' => 'ghi', 'Gohir.D09G225000' => 'ghi', 'Gohir.D09G225100' => 'ghi', 'Gohir.D10G152300' => 'ghi', 'Gohir.D10G153200' => 'ghi', 'Gohir.D11G133701' => 'ghi', 'Gorai.004G074100' => 'gra', 'Gorai.005G046800' => 'gra', 'Gorai.006G246500' => 'gra', 'Gorai.006G246600' => 'gra', 'Gorai.007G142900' => 'gra', 'Gorai.011G171000' => 'gra', 'Gorai.011G171100' => 'gra', 'Gorai.013G104300' => 'gra', 'Gorai.013G104400' => 'gra', 'GSVIVG01000754001' => 'vvi', 'GSVIVG01000756001' => 'vvi', 'GSVIVG01010903001' => 'vvi', 'GSVIVG01017623001' => 'vvi', 'GSVIVG01018113001' => 'vvi', 'GSVIVG01018116001' => 'vvi', 'GSVIVG01018118001' => 'vvi', 'HanXRQChr03g0076211' => 'han', 'HanXRQChr03g0092431' => 'han', 'HanXRQChr03g0092441' => 'han', 'HanXRQChr03g0092591' => 'han', 'HanXRQChr03g0092671' => 'han', 'HanXRQChr03g0092681' => 'han', 'HanXRQChr03g0092691' => 'han', 'HanXRQChr03g0092701' => 'han', 'HanXRQChr03g0092721' => 'han', 'HanXRQChr03g0092731' => 'han', 'HanXRQChr04g0113681' => 'han', 'HanXRQChr10g0281371' => 'han', 'HanXRQChr11g0337141' => 'han', 'HanXRQChr13g0424521' => 'han', 'HanXRQChr13g0424531' => 'han', 'HanXRQChr13g0424541' => 'han', 'HanXRQChr16g0498221' => 'han', 'Haze_04377' => 'cav', 'Haze_11298' => 'cav', 'Haze_24547' => 'cav', 'Haze_24550' => 'cav', 'Haze_26587' => 'cav', 'Hma1.2p1_0650F.1_g195410' => 'hma', 'Hma1.2p1_0893F.1_g233470' => 'hma', 'HPP92_006508' => 'vpl', 'HPP92_024780' => 'vpl', 'Hund02688' => 'sun', 'Hund09380' => 'sun', 'Hund09381' => 'sun', 'Hund09832' => 'sun', 'Hund09833' => 'sun', 'Hund11351' => 'sun', 'Hund11513' => 'sun', 'Lalb_Chr06g0162591' => 'lal', 'Lalb_Chr06g0162601' => 'lal', 'Lalb_Chr06g0169321' => 'lal', 'Lalb_Chr09g0330951' => 'lal', 'Lalb_Chr16g0387631' => 'lal', 'Lalb_Chr21g0306241' => 'lal', 'Lalb_Chr25g0290051' => 'lal', 'Lalb_Chr25g0290061' => 'lal', 'Lalb_Chr25g0290071' => 'lal', 'Lj1g0003876' => 'lja', 'Lj1P1207T36' => 'lonja', 'Lj2C1156G12' => 'lonja', 'Lj3A793G39' => 'lonja', 'Lj3C580G2' => 'lonja', 'Lj3C780G2' => 'lonja', 'Lj3C780T4' => 'lonja', 'Lj3C793G9' => 'lonja', 'Lj4g0012960' => 'lja', 'Lj5g0021252' => 'lja', 'Lj5g0021484' => 'lja', 'Lj5g0024528' => 'lja', 'Lj6A399T12' => 'lonja', 'Lj6A656G65' => 'lonja', 'Lsat_1_v5_gn_3_125500' => 'lsa', 'Lsat_1_v5_gn_3_125540' => 'lsa', 'Lsat_1_v5_gn_5_72701' => 'lsa', 'Lsat_1_v5_gn_8_91560' => 'lsa', 'Lsat_1_v5_gn_9_9640' => 'lsa', 'Manes.01G200600' => 'mes', 'Manes.01G200700' => 'mes', 'Manes.03G168900' => 'mes', 'Manes.03G169000' => 'mes', 'Manes.05G085801' => 'mes', 'Manes.05G086200' => 'mes', 'Manes.15G036700' => 'mes', 'Manes.15G036900' => 'mes', 'Mapoly0004s0172' => 'mpo', 'Mapoly0023s0001' => 'mpo', 'Mapoly0142s0012' => 'mpo', 'MBI01_g32854_MAGBIO' => 'mbi', 'MBI11_g24427_MAGBIO' => 'mbi', 'MBI11_g47319_MAGBIO' => 'mbi', 'MCO01G433' => 'mco', 'MD00G1187800' => 'mdo', 'MD04G1226500' => 'mdo', 'MD05G1203900' => 'mdo', 'MD10G1191100' => 'mdo', 'MD12G1243500' => 'mdo', 'MD13G1207000' => 'mdo', 'MD13G1207100' => 'mdo', 'MD16G1208600' => 'mdo', 'Medtr1g050352' => 'mtr', 'Medtr1g070385' => 'mtr', 'Medtr1g070450' => 'mtr', 'Medtr1g075200' => 'mtr', 'Medtr1g075250' => 'mtr', 'Medtr1g075260' => 'mtr', 'Medtr1g475250' => 'mtr', 'Medtr4g075450' => 'mtr', 'Medtr7g096300' => 'mtr', 'Medtr8g105110' => 'mtr', 'MELO3C006470.2' => 'cme', 'MELO3C006471.2' => 'cme', 'MELO3C020772.2' => 'cme', 'MELO3C026780.2' => 'cme', 'MELO3C026781.2' => 'cme', 'Migut.D00390' => 'egut', 'Migut.G00435' => 'egut', 'Migut.G00436' => 'egut', 'Migut.G00718' => 'egut', 'MSTRG.21891' => 'ama', 'MSTRG.26910' => 'ama', 'MSTRG.4099' => 'ama', 'MSTRG.9925' => 'ama', 'Nitab4.5_0000165g0010' => 'nta', 'Nitab4.5_0000209g0180' => 'nta', 'Nitab4.5_0000244g0440' => 'nta', 'Nitab4.5_0000525g0220' => 'nta', 'Nitab4.5_0001597g0020' => 'nta', 'Nitab4.5_0001878g0040' => 'nta', 'Nitab4.5_0001878g0060' => 'nta', 'Nitab4.5_0002838g0100' => 'nta', 'Nitab4.5_0002838g0120' => 'nta', 'Nitab4.5_0004798g0030' => 'nta', 'Nitab4.5_0005420g0010' => 'nta', 'Nitab4.5_0005507g0010' => 'nta', 'Nitab4.5_0005574g0020' => 'nta', 'Nitab4.5_0005838g0010' => 'nta', 'Nitab4.5_0010580g0020' => 'nta', 'Nn1g02599' => 'nnu', 'Nn1g02608' => 'nnu', 'Nn3g17742' => 'nnu', 'Nn3g19534' => 'nnu', 'Nn3g19535' => 'nnu', 'Oeu008790.1' => 'oeu', 'Oeu008792.1' => 'oeu', 'Oeu032590.1' => 'oeu', 'Oeu035349.1' => 'oeu', 'Oeu049791.1' => 'oeu', 'Os01g0774500' => 'osa', 'Os03g0628800' => 'osa', 'Os03g0798600' => 'osa', 'Os05g0508800' => 'osa', 'Peaxi162Scf00036g02018' => 'pax', 'Peaxi162Scf00578g00032' => 'pax', 'Peaxi162Scf00578g00317' => 'pax', 'Peaxi162Scf00785g00114' => 'pax', 'Peaxi162Scf00813g00119' => 'pax', 'Peaxi162Scf00906g00227' => 'pax', 'PGR004G0875' => 'pgr', 'PGR004G2424' => 'pgr', 'PGR031G1239' => 'pgr', 'PGR031G2474' => 'pgr', 'PGR044G0423' => 'pgr', 'PGSC0003DMG400001128' => 'stu', 'PGSC0003DMG400007336' => 'stu', 'PGSC0003DMG400016318' => 'stu', 'PGSC0003DMG400016319' => 'stu', 'PGSC0003DMG400018074' => 'stu', 'Phvul.001G157700' => 'pvu', 'Phvul.002G148550' => 'pvu', 'Phvul.002G320200' => 'pvu', 'Phvul.003G089200' => 'pvu', 'Phvul.007G126000' => 'pvu', 'Phvul.007G126100' => 'pvu', 'Phvul.007G178000' => 'pvu', 'Phvul.007G178200' => 'pvu', 'Potri.002G043000' => 'ptr', 'Potri.002G043200' => 'ptr', 'Potri.003G123750' => 'ptr', 'Potri.005G055401' => 'ptr', 'Potri.005G219700' => 'ptr', 'Potri.005G220000' => 'ptr', 'Potri.008G161901' => 'ptr', 'Potri.008G162000' => 'ptr', 'Potri.008G162400' => 'ptr', 'Potri.010G076900' => 'ptr', 'Pp3c12_9180' => 'ppa', 'Pp3c13_19770' => 'ppa', 'Pp3c14_22950' => 'ppa', 'Pp3c16_12160' => 'ppa', 'Pp3c27_7820' => 'ppa', 'Pp3c2_3490' => 'ppa', 'Pp3c3_23700' => 'ppa', 'Pp3c3_36520' => 'ppa', 'Pp3c4_15250' => 'ppa', 'PRCOL_00007002' => 'pco', 'Prupe.1G030600' => 'ppe', 'Prupe.1G030700' => 'ppe', 'Prupe.6G345200' => 'ppe', 'Prupe.8G230300' => 'ppe', 'Prupe.8G230500' => 'ppe', 'Psat3g059600' => 'psa', 'Psat5g200920' => 'psa', 'Psat6g056440' => 'psa', 'Psat6g057360' => 'psa', 'Psat6g134120' => 'psa', 'Psat6g134160' => 'psa', 'Psat7g008640' => 'psa', 'Psat7g185240' => 'psa', 'PSO017G1330' => 'pso', 'PSO063G6097' => 'pso', 'PSO170G0835' => 'pso', 'PSO170G2499' => 'pso', 'PSO210G5058' => 'pso', 'PSO210G6154' => 'pso', 'PSO585G0031' => 'pso', 'PSO832G0264' => 'pso', 'PSO832G4288' => 'pso', 'QL03p027355' => 'qlo', 'QL03p027430' => 'qlo', 'QL04p081380' => 'qlo', 'QL06p015642' => 'qlo', 'QL06p015650' => 'qlo', 'QL06p015686' => 'qlo', 'QL12p042927' => 'qlo', 'QL93p1863_0035' => 'qlo', 'RcHm_v2.0_Chr3g0450581' => 'rch', 'RcHm_v2.0_Chr4g0390371' => 'rch', 'RcHm_v2.0_Chr4g0390381' => 'rch', 'RcHm_v2.0_Chr4g0390491' => 'rch', 'RcHm_v2.0_Chr4g0390501' => 'rch', 'RcHm_v2.0_Chr6g0289231' => 'rch', 'Rhsim04G0190400' => 'rsi', 'Rhsim04G0190500' => 'rsi', 'Rhsim04G0190600' => 'rsi', 'Rhsim13G0031400' => 'rsi', 'Rhsim13G0165600' => 'rsi', 'RhsimUnG0114600' => 'rsi', 'RhsimUnG0114700' => 'rsi', 'Sabra02G0034800' => 'sbr', 'Sabra02G0035100' => 'sbr', 'Sabra05G0168600' => 'sbr', 'Sabra05G0168800' => 'sbr', 'Sabra08G0123700' => 'sbr', 'Sabra10G0031900' => 'sbr', 'Sabra13G0039000' => 'sbr', 'SalBow2G0782' => 'sbo', 'SalBow2G1403' => 'sbo', 'SalBow4G0074' => 'sbo', 'SalBow4G2635' => 'sbo', 'SalBow5G3010' => 'sbo', 'Sc05g0000870' => 'sci', 'Sc05g0000890' => 'sci', 'Sc13g0005000' => 'sci', 'Sc13g0005030' => 'sci', 'Sc19g0003790' => 'sci', 'Sc19g0003800' => 'sci', 'Sed0003467' => 'sed', 'Sed0009355' => 'sed', 'Sed0009894' => 'sed', 'Sed0011972' => 'sed', 'Sed0021483' => 'sed', 'Sed0021750' => 'sed', 'Sed0026279' => 'sed', 'SEGI_05312' => 'sgi', 'SEGI_10112' => 'sgi', 'SEGI_15835' => 'sgi', 'SEGI_30386' => 'sgi', 'SEGI_34122' => 'sgi', 'SEGI_35063' => 'sgi', 'SGA_v2.0_scaffold101G29794' => 'sas', 'SGA_v2.0_scaffold1G00573' => 'sas', 'SGA_v2.0_scaffold79G25637' => 'sas', 'SGA_v2.0_scaffold88G27283' => 'sas', 'SGA_v2.0_scaffold88G27285' => 'sas', 'SGA_v2.0_scaffold88G27331' => 'sas', 'SHI09937' => 'shi', 'SMO119G0302' => 'smo', 'SMO137G0231' => 'smo', 'SMO367G1151' => 'smo', 'Solyc02g082000.3' => 'sly', 'Solyc06g031670.3' => 'sly', 'Solyc06g053810.3' => 'sly', 'Solyc07g025457.1' => 'sly', 'Solyc08g059740.1' => 'sly', 'Solyc08g059750.3' => 'sly', 'Solyc09g083370.3' => 'sly', 'Solyc12g038950.3' => 'sly', 'Sopen02g026630' => 'spe', 'Sopen06g018930' => 'spe', 'Sopen06g018940' => 'spe', 'Sopen08g009460' => 'spe', 'Sopen09g032290' => 'spe', 'Sp1g03080' => 'spa', 'Sp1g03090' => 'spa', 'Sp1g05480' => 'spa', 'Sp2g07860' => 'spa', 'Sp2g08430' => 'spa', 'Sp2g08440' => 'spa', 'Sp2g26200' => 'spa', 'Sp4g13170' => 'spa', 'Sp6g33840' => 'spa', 'SpUn1204_0010' => 'spa', 'TAR365G0908' => 'tar', 'TAR381G1270' => 'tar', 'TAR381G1651' => 'tar', 'TAR625G1131' => 'tar', 'TAR633G0962' => 'tar', 'TAR633G1729' => 'tar', 'TAR633G1864' => 'tar', 'TAR636G0221' => 'tar', 'TAR636G0314' => 'tar', 'TAR636G3202' => 'tar', 'THA.LOC104800805' => 'tha', 'THA.LOC104801096' => 'tha', 'THA.LOC104801555' => 'tha', 'THA.LOC104808491' => 'tha', 'THA.LOC104808595' => 'tha', 'THA.LOC104815985' => 'tha', 'THA.LOC104822250' => 'tha', 'THA.LOC104826071' => 'tha', 'Thecc.01G265200' => 'tca', 'Thecc.01G265300' => 'tca', 'Thecc.01G265700' => 'tca', 'Thecc.03G109100' => 'tca', 'Thecc.04G245900' => 'tca', 'Thecc.04G246000' => 'tca', 'Thhalv10003334m.g' => 'esa', 'Thhalv10005508m.g' => 'esa', 'Thhalv10005643m.g' => 'esa', 'Thhalv10007316m.g' => 'esa', 'Thhalv10009006m.g' => 'esa', 'Thhalv10009309m.g' => 'esa', 'Thhalv10014917m.g' => 'esa', 'Thhalv10014919m.g' => 'esa', 'Thhalv10015393m.g' => 'esa', 'Thhalv10016515m.g' => 'esa', 'Thhalv10029242m.g' => 'esa', 'TPR.G16654' => 'tpr', 'TPR.G20589' => 'tpr', 'TPR.G23029' => 'tpr', 'TPR.G27731' => 'tpr', 'TPR.G28889' => 'tpr', 'TPR.G28899' => 'tpr', 'TPR.G30846' => 'tpr', 'TPR.G5452' => 'tpr', 'TPR.G5713' => 'tpr', 'TPR.G9046' => 'tpr', 'TPR.G9061' => 'tpr', 'TWI09G1075' => 'twi', 'TWI12G0806' => 'twi', 'TWI18G0108' => 'twi', 'TWI53G1361' => 'twi', 'TWI73G0185' => 'twi', 'TWI73G0427' => 'twi', 'unitig_37.g12001' => 'ugi', 'unitig_747.g21660' => 'ugi', 'unitig_748.g7232' => 'ugi', 'unitig_748.g7315' => 'ugi', 'unitig_85.g27262' => 'ugi', 'unitig_92.g28220' => 'ugi', 'vmacro02632' => 'vma', 'vmacro08410' => 'vma', 'vmacro08411' => 'vma', 'vmacro15407' => 'vma', 'VMungo0251G3619' => 'vmu', 'VMungo0720G1204' => 'vmu', 'VMungo0720G1918' => 'vmu', 'VMungo0720G2387' => 'vmu', 'VMungo0720G2961' => 'vmu', 'VMungo1215G2154' => 'vmu', 'VMungo1383G2411' => 'vmu', 'Zm00001eb051130' => 'zma', 'Zm00001eb116830' => 'zma', 'Zm00001eb116850' => 'zma', 'Zm00001eb151740' => 'zma', 'Zm00001eb292360' => 'zma', 'Zm00001eb301640' => 'zma' ) $gf_id = 'HOM05D000856' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000856' ) $data_identifier = 'HOM05D000856' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 13, 'ath' => (int) 10, 'atr' => (int) 1, 'acertr' => (int) 8, 'cqu' => (int) 6, 'bca' => (int) 21, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 11, 'car' => (int) 9, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 8, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 5, 'fan' => (int) 16, 'fve' => (int) 6, 'gma' => (int) 11, 'ghi' => (int) 19, 'gra' => (int) 9, 'vvi' => (int) 7, 'han' => (int) 17, 'cav' => (int) 5, 'hma' => (int) 2, 'vpl' => (int) 2, 'sun' => (int) 7, 'lal' => (int) 9, 'lja' => (int) 5, 'lonja' => (int) 9, 'lsa' => (int) 5, 'mes' => (int) 8, 'mpo' => (int) 3, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 10, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 15, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 9, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 9, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 6, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 5, 'spa' => (int) 10, 'tar' => (int) 10, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 11, 'tpr' => (int) 11, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 4, 'vmu' => (int) 7, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb301640' $species_info = array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ) $local_species = 'twi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000856', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p00010' => 'bna', 'A03p04160' => 'bna', 'A03p17160' => 'bna', 'A04p23370' => 'bna', 'A05p14860' => 'bna', 'A08p37020' => 'bna', 'A09p08050' => 'bna', 'A09p66800' => 'bna', 'A09p67940' => 'bna', 'A10p02680' => 'bna', 'A10p05320' => 'bna', 'Aa31LG1G20560' => 'aar', 'Aa31LG1G20610' => 'aar', 'Aa31LG1G7810' => 'aar', 'Aa31LG5G3590' => 'aar', 'Aa31LG5G6140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3819' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4683' => 'aag', 'Actinidia04480' => 'ach', 'Actinidia05466' => 'ach', 'Actinidia08445' => 'ach', 'Actinidia21170' => 'ach', 'Actinidia24812' => 'ach', 'Actinidia24951' => 'ach', 'Actinidia40088' => 'ach', 'Ah.02g111660' => 'amhyb', 'Ah.11g048900' => 'amhyb', 'Ah.11g049910' => 'amhyb', 'AL1G13870' => 'aly', 'AL1G13880' => 'aly', 'AL1G16760' => 'aly', 'AL390U10020' => 'aly', 'AL4G25520' => 'aly', 'AL6G19890' => 'aly', 'AL6G19900' => 'aly', 'AL6G19910' => 'aly', 'AL8G40100' => 'aly', 'Aqoxy2G03562' => 'aox', 'Aqoxy5G00316' => 'aox', 'Aqoxy5G00926' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1628KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1H403S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2FU6SJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.882I6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8YRY2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YN1SN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AF70II' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZA8L1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F916KL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHRD8H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KTZ8QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S22EMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8M29T' => 'arhy', 'AT1G04270' => 'ath', 'AT1G04280' => 'ath', 'AT1G06750' => 'ath', 'AT1G33850' => 'ath', 'AT2G30630' => 'ath', 'AT5G09490' => 'ath', 'AT5G09500' => 'ath', 'AT5G09510' => 'ath', 'AT5G43640' => 'ath', 'AT5G63070' => 'ath', 'ATR0605G315' => 'atr', 'Atru.chr11.175' => 'acertr', 'Atru.chr11.653' => 'acertr', 'Atru.chr3.1616' => 'acertr', 'Atru.chr4.2230' => 'acertr', 'Atru.chr4.2232' => 'acertr', 'Atru.chr5.1598' => 'acertr', 'Atru.chr5.1600' => 'acertr', 'Atru.chr5.2188' => 'acertr', 'AUR62008326' => 'cqu', 'AUR62011922' => 'cqu', 'AUR62011924' => 'cqu', 'AUR62021771' => 'cqu', 'AUR62032237' => 'cqu', 'AUR62032240' => 'cqu', 'BcaB01g05572' => 'bca', 'BcaB02g10337' => 'bca', 'BcaB04g19944' => 'bca', 'BcaB05g21548' => 'bca', 'BcaB05g21549' => 'bca', 'BcaB05g23227' => 'bca', 'BcaB06g26256' => 'bca', 'BcaB06g26257' => 'bca', 'BcaB06g28379' => 'bca', 'BcaC02g11159' => 'bca', 'BcaC03g13258' => 'bca', 'BcaC03g13259' => 'bca', 'BcaC05g24456' => 'bca', 'BcaC05g24457' => 'bca', 'BcaC07g36922' => 'bca', 'BcaC07g36923' => 'bca', 'BcaC07g42050' => 'bca', 'BcaC07g42176' => 'bca', 'BcaC07g42195' => 'bca', 'BcaC07g42196' => 'bca', 'BcaNung06674' => 'bca', 'BolC2t06351H' => 'bol', 'BolC2t06352H' => 'bol', 'BolC3t12993H' => 'bol', 'BolC4t23525H' => 'bol', 'BolC4t27475H' => 'bol', 'BolC5t29025H' => 'bol', 'BolC5t29026H' => 'bol', 'BolC8t46898H' => 'bol', 'BolC8t46899H' => 'bol', 'BolC8t52630H' => 'bol', 'BolC8t52765H' => 'bol', 'BolC9t53824H' => 'bol', 'BraA03t09760Z' => 'bra', 'BraA03t10990Z' => 'bra', 'BraA05t20413Z' => 'bra', 'BraA08t35602Z' => 'bra', 'BraA09t36458Z' => 'bra', 'BraA09t42018Z' => 'bra', 'BraA09t42129Z' => 'bra', 'BraA10t42536Z' => 'bra', 'BraA10t42537Z' => 'bra', 'C01p10690' => 'bna', 'C02p03890' => 'bna', 'C02p03900' => 'bna', 'C03p04620' => 'bna', 'C04p19870' => 'bna', 'C04p59670' => 'bna', 'C05p02460' => 'bna', 'C05p02470' => 'bna', 'C08p00980' => 'bna', 'C08p00990' => 'bna', 'C08p51030' => 'bna', 'C08p52360' => 'bna', 'C09p09120' => 'bna', 'CAN.G19.15' => 'can', 'CAN.G251.10' => 'can', 'CAN.G251.9' => 'can', 'CAN.G398.24' => 'can', 'CAN.G410.32' => 'can', 'CAN.G881.2' => 'can', 'CANSAT01G3025' => 'cansat', 'CANSAT78G1211' => 'cansat', 'CANSAT78G1218' => 'cansat', 'CANSAT78G1521' => 'cansat', 'CANSAT78G1670' => 'cansat', 'CARHR003600' => 'chi', 'CARHR003610' => 'chi', 'CARHR006290' => 'chi', 'CARHR006430' => 'chi', 'CARHR124110' => 'chi', 'CARHR203870' => 'chi', 'CARHR203880' => 'chi', 'CARHR203890' => 'chi', 'CARHR276880' => 'chi', 'Carub.0001s0346' => 'cru', 'Carub.0001s0347' => 'cru', 'Carub.0001s0607' => 'cru', 'Carub.0003s2768' => 'cru', 'Carub.0003s2769' => 'cru', 'Carub.0004s1178' => 'cru', 'Carub.0006s0806' => 'cru', 'Carub.0006s0807' => 'cru', 'Carub.0006s0808' => 'cru', 'Carub.0008s0501' => 'cru', 'Carub.0008s2379' => 'cru', 'Ca_08655_v3' => 'car', 'Ca_08922_v3' => 'car', 'Ca_08923_v3' => 'car', 'Ca_09119_v3' => 'car', 'Ca_09703_v3' => 'car', 'Ca_09705_v3' => 'car', 'Ca_09835_v3' => 'car', 'Ca_26403_v3' => 'car', 'Ca_30719_v3' => 'car', 'CBR_g17958' => 'cbr', 'CBR_g40516' => 'cbr', 'Cc00_g05350' => 'ccan', 'Cc01_g18690' => 'ccan', 'Cc03_g04830' => 'ccan', 'Cc03_g04850' => 'ccan', 'CDE02G4469' => 'cde', 'CDE06G0883' => 'cde', 'CDE06G1295' => 'cde', 'CDE06G1390' => 'cde', 'CDE07G0584' => 'cde', 'CDE07G1084' => 'cde', 'CDE08G1259' => 'cde', 'Cfa002341' => 'cfa', 'Cfa024337' => 'cfa', 'Ciclev10004749m.g' => 'ccl', 'Ciclev10006127m.g' => 'ccl', 'Ciclev10019720m.g' => 'ccl', 'Ciclev10022652m.g' => 'ccl', 'CiPaw.01G190400' => 'cil', 'CiPaw.01G190500' => 'cil', 'CiPaw.02G116400' => 'cil', 'CiPaw.02G116500' => 'cil', 'CiPaw.04G183000' => 'cil', 'CiPaw.04G183300' => 'cil', 'ClCG05G004610' => 'cla', 'ClCG05G004620' => 'cla', 'ClCG06G006730' => 'cla', 'ClCG06G006740' => 'cla', 'ClCG11G003690' => 'cla', 'COL.COLO4_08276' => 'col', 'COL.COLO4_08277' => 'col', 'COL.COLO4_15787' => 'col', 'COL.COLO4_15789' => 'col', 'Cpa.g.c44815' => 'cpa', 'Cpa.g.sc52.144' => 'cpa', 'Cpa.g.sc58.46' => 'cpa', 'Cpa.g.sc58.47' => 'cpa', 'Cre08.g360900' => 'cre', 'CsaV3_2G013030' => 'csa', 'CsaV3_2G013050' => 'csa', 'CsaV3_2G015620' => 'csa', 'CsaV3_3G012590' => 'csa', 'CsaV3_3G012600' => 'csa', 'CSS0001641' => 'camsi', 'CSS0008310' => 'camsi', 'CSS0013011' => 'camsi', 'CSS0017147' => 'camsi', 'CSS0022970' => 'camsi', 'CSS0025655' => 'camsi', 'CSS0028665' => 'camsi', 'CSS0029117' => 'camsi', 'CSS0032024' => 'camsi', 'CSS0039681' => 'camsi', 'CSS0046516' => 'camsi', 'CSS0050307' => 'camsi', 'DCAR_005871' => 'dca', 'DCAR_007342' => 'dca', 'DCAR_024228' => 'dca', 'DCAR_027277' => 'dca', 'DCAR_030718' => 'dca', 'Dinv20287' => 'din', 'Dinv22461' => 'din', 'Dinv22464' => 'din', 'Dinv29912' => 'din', 'Dinv29913' => 'din', 'Dinv34580' => 'din', 'Dinv34582' => 'din', 'Dinv44632' => 'din', 'Duzib052G0266' => 'dzi', 'Duzib133G0907' => 'dzi', 'Duzib133G1034' => 'dzi', 'Duzib138G0207' => 'dzi', 'Duzib138G0491' => 'dzi', 'Duzib151G0812' => 'dzi', 'Duzib151G1166' => 'dzi', 'Duzib168G0192' => 'dzi', 'Duzib211G0077' => 'dzi', 'Duzib212G0429' => 'dzi', 'Duzib212G0472' => 'dzi', 'ECA233G2617' => 'eca', 'ECA236G4188' => 'eca', 'ECA240G0936' => 'eca', 'ECA240G1129' => 'eca', 'ECA247G0623' => 'eca', 'EL10Ac5g10451' => 'bvu', 'EL10Ac5g10453' => 'bvu', 'EL10Ac5g10894' => 'bvu', 'Eucgr.H00192' => 'egr', 'Eucgr.H00193' => 'egr', 'Eucgr.H00194' => 'egr', 'Eucgr.J01562' => 'egr', 'Eucgr.K03301' => 'egr', 'FAN02G0632' => 'fan', 'FAN05G5378' => 'fan', 'FAN09G3247' => 'fan', 'FAN12G0435' => 'fan', 'FAN12G2426' => 'fan', 'FAN14G1707' => 'fan', 'FAN14G4725' => 'fan', 'FAN15G2071' => 'fan', 'FAN17G3065' => 'fan', 'FAN19G1376' => 'fan', 'FAN20G0354' => 'fan', 'FAN20G2429' => 'fan', 'FAN20G2658' => 'fan', 'FAN24G2343' => 'fan', 'FAN27G2362' => 'fan', 'FAN28G1765' => 'fan', 'FvH4_1g16020' => 'fve', 'FvH4_2g04890' => 'fve', 'FvH4_2g22270' => 'fve', 'FvH4_4g02630' => 'fve', 'FvH4_4g02640' => 'fve', 'FvH4_6g02650' => 'fve', 'Glyma.02G140600' => 'gma', 'Glyma.03G159900' => 'gma', 'Glyma.05G234800' => 'gma', 'Glyma.07G269600' => 'gma', 'Glyma.08G042300' => 'gma', 'Glyma.10G033500' => 'gma', 'Glyma.10G185200' => 'gma', 'Glyma.17G004300' => 'gma', 'Glyma.19G161900' => 'gma', 'Glyma.20G205100' => 'gma', 'Glyma.20G205200' => 'gma', 'Gohir.A01G139101' => 'ghi', 'Gohir.A02G035600' => 'ghi', 'Gohir.A02G117901' => 'ghi', 'Gohir.A07G210100' => 'ghi', 'Gohir.A07G210200' => 'ghi', 'Gohir.A08G061100' => 'ghi', 'Gohir.A09G223000' => 'ghi', 'Gohir.A09G223100' => 'ghi', 'Gohir.A10G113900' => 'ghi', 'Gohir.A10G114000' => 'ghi', 'Gohir.D02G042300' => 'ghi', 'Gohir.D07G216100' => 'ghi', 'Gohir.D07G216200' => 'ghi', 'Gohir.D08G070400' => 'ghi', 'Gohir.D09G225000' => 'ghi', 'Gohir.D09G225100' => 'ghi', 'Gohir.D10G152300' => 'ghi', 'Gohir.D10G153200' => 'ghi', 'Gohir.D11G133701' => 'ghi', 'Gorai.004G074100' => 'gra', 'Gorai.005G046800' => 'gra', 'Gorai.006G246500' => 'gra', 'Gorai.006G246600' => 'gra', 'Gorai.007G142900' => 'gra', 'Gorai.011G171000' => 'gra', 'Gorai.011G171100' => 'gra', 'Gorai.013G104300' => 'gra', 'Gorai.013G104400' => 'gra', 'GSVIVG01000754001' => 'vvi', 'GSVIVG01000756001' => 'vvi', 'GSVIVG01010903001' => 'vvi', 'GSVIVG01017623001' => 'vvi', 'GSVIVG01018113001' => 'vvi', 'GSVIVG01018116001' => 'vvi', 'GSVIVG01018118001' => 'vvi', 'HanXRQChr03g0076211' => 'han', 'HanXRQChr03g0092431' => 'han', 'HanXRQChr03g0092441' => 'han', 'HanXRQChr03g0092591' => 'han', 'HanXRQChr03g0092671' => 'han', 'HanXRQChr03g0092681' => 'han', 'HanXRQChr03g0092691' => 'han', 'HanXRQChr03g0092701' => 'han', 'HanXRQChr03g0092721' => 'han', 'HanXRQChr03g0092731' => 'han', 'HanXRQChr04g0113681' => 'han', 'HanXRQChr10g0281371' => 'han', 'HanXRQChr11g0337141' => 'han', 'HanXRQChr13g0424521' => 'han', 'HanXRQChr13g0424531' => 'han', 'HanXRQChr13g0424541' => 'han', 'HanXRQChr16g0498221' => 'han', 'Haze_04377' => 'cav', 'Haze_11298' => 'cav', 'Haze_24547' => 'cav', 'Haze_24550' => 'cav', 'Haze_26587' => 'cav', 'Hma1.2p1_0650F.1_g195410' => 'hma', 'Hma1.2p1_0893F.1_g233470' => 'hma', 'HPP92_006508' => 'vpl', 'HPP92_024780' => 'vpl', 'Hund02688' => 'sun', 'Hund09380' => 'sun', 'Hund09381' => 'sun', 'Hund09832' => 'sun', 'Hund09833' => 'sun', 'Hund11351' => 'sun', 'Hund11513' => 'sun', 'Lalb_Chr06g0162591' => 'lal', 'Lalb_Chr06g0162601' => 'lal', 'Lalb_Chr06g0169321' => 'lal', 'Lalb_Chr09g0330951' => 'lal', 'Lalb_Chr16g0387631' => 'lal', 'Lalb_Chr21g0306241' => 'lal', 'Lalb_Chr25g0290051' => 'lal', 'Lalb_Chr25g0290061' => 'lal', 'Lalb_Chr25g0290071' => 'lal', 'Lj1g0003876' => 'lja', 'Lj1P1207T36' => 'lonja', 'Lj2C1156G12' => 'lonja', 'Lj3A793G39' => 'lonja', 'Lj3C580G2' => 'lonja', 'Lj3C780G2' => 'lonja', 'Lj3C780T4' => 'lonja', 'Lj3C793G9' => 'lonja', 'Lj4g0012960' => 'lja', 'Lj5g0021252' => 'lja', 'Lj5g0021484' => 'lja', 'Lj5g0024528' => 'lja', 'Lj6A399T12' => 'lonja', 'Lj6A656G65' => 'lonja', 'Lsat_1_v5_gn_3_125500' => 'lsa', 'Lsat_1_v5_gn_3_125540' => 'lsa', 'Lsat_1_v5_gn_5_72701' => 'lsa', 'Lsat_1_v5_gn_8_91560' => 'lsa', 'Lsat_1_v5_gn_9_9640' => 'lsa', 'Manes.01G200600' => 'mes', 'Manes.01G200700' => 'mes', 'Manes.03G168900' => 'mes', 'Manes.03G169000' => 'mes', 'Manes.05G085801' => 'mes', 'Manes.05G086200' => 'mes', 'Manes.15G036700' => 'mes', 'Manes.15G036900' => 'mes', 'Mapoly0004s0172' => 'mpo', 'Mapoly0023s0001' => 'mpo', 'Mapoly0142s0012' => 'mpo', 'MBI01_g32854_MAGBIO' => 'mbi', 'MBI11_g24427_MAGBIO' => 'mbi', 'MBI11_g47319_MAGBIO' => 'mbi', 'MCO01G433' => 'mco', 'MD00G1187800' => 'mdo', 'MD04G1226500' => 'mdo', 'MD05G1203900' => 'mdo', 'MD10G1191100' => 'mdo', 'MD12G1243500' => 'mdo', 'MD13G1207000' => 'mdo', 'MD13G1207100' => 'mdo', 'MD16G1208600' => 'mdo', 'Medtr1g050352' => 'mtr', 'Medtr1g070385' => 'mtr', 'Medtr1g070450' => 'mtr', 'Medtr1g075200' => 'mtr', 'Medtr1g075250' => 'mtr', 'Medtr1g075260' => 'mtr', 'Medtr1g475250' => 'mtr', 'Medtr4g075450' => 'mtr', 'Medtr7g096300' => 'mtr', 'Medtr8g105110' => 'mtr', 'MELO3C006470.2' => 'cme', 'MELO3C006471.2' => 'cme', 'MELO3C020772.2' => 'cme', 'MELO3C026780.2' => 'cme', 'MELO3C026781.2' => 'cme', 'Migut.D00390' => 'egut', 'Migut.G00435' => 'egut', 'Migut.G00436' => 'egut', 'Migut.G00718' => 'egut', 'MSTRG.21891' => 'ama', 'MSTRG.26910' => 'ama', 'MSTRG.4099' => 'ama', 'MSTRG.9925' => 'ama', 'Nitab4.5_0000165g0010' => 'nta', 'Nitab4.5_0000209g0180' => 'nta', 'Nitab4.5_0000244g0440' => 'nta', 'Nitab4.5_0000525g0220' => 'nta', 'Nitab4.5_0001597g0020' => 'nta', 'Nitab4.5_0001878g0040' => 'nta', 'Nitab4.5_0001878g0060' => 'nta', 'Nitab4.5_0002838g0100' => 'nta', 'Nitab4.5_0002838g0120' => 'nta', 'Nitab4.5_0004798g0030' => 'nta', 'Nitab4.5_0005420g0010' => 'nta', 'Nitab4.5_0005507g0010' => 'nta', 'Nitab4.5_0005574g0020' => 'nta', 'Nitab4.5_0005838g0010' => 'nta', 'Nitab4.5_0010580g0020' => 'nta', 'Nn1g02599' => 'nnu', 'Nn1g02608' => 'nnu', 'Nn3g17742' => 'nnu', 'Nn3g19534' => 'nnu', 'Nn3g19535' => 'nnu', 'Oeu008790.1' => 'oeu', 'Oeu008792.1' => 'oeu', 'Oeu032590.1' => 'oeu', 'Oeu035349.1' => 'oeu', 'Oeu049791.1' => 'oeu', 'Os01g0774500' => 'osa', 'Os03g0628800' => 'osa', 'Os03g0798600' => 'osa', 'Os05g0508800' => 'osa', 'Peaxi162Scf00036g02018' => 'pax', 'Peaxi162Scf00578g00032' => 'pax', 'Peaxi162Scf00578g00317' => 'pax', 'Peaxi162Scf00785g00114' => 'pax', 'Peaxi162Scf00813g00119' => 'pax', 'Peaxi162Scf00906g00227' => 'pax', 'PGR004G0875' => 'pgr', 'PGR004G2424' => 'pgr', 'PGR031G1239' => 'pgr', 'PGR031G2474' => 'pgr', 'PGR044G0423' => 'pgr', 'PGSC0003DMG400001128' => 'stu', 'PGSC0003DMG400007336' => 'stu', 'PGSC0003DMG400016318' => 'stu', 'PGSC0003DMG400016319' => 'stu', 'PGSC0003DMG400018074' => 'stu', 'Phvul.001G157700' => 'pvu', 'Phvul.002G148550' => 'pvu', 'Phvul.002G320200' => 'pvu', 'Phvul.003G089200' => 'pvu', 'Phvul.007G126000' => 'pvu', 'Phvul.007G126100' => 'pvu', 'Phvul.007G178000' => 'pvu', 'Phvul.007G178200' => 'pvu', 'Potri.002G043000' => 'ptr', 'Potri.002G043200' => 'ptr', 'Potri.003G123750' => 'ptr', 'Potri.005G055401' => 'ptr', 'Potri.005G219700' => 'ptr', 'Potri.005G220000' => 'ptr', 'Potri.008G161901' => 'ptr', 'Potri.008G162000' => 'ptr', 'Potri.008G162400' => 'ptr', 'Potri.010G076900' => 'ptr', 'Pp3c12_9180' => 'ppa', 'Pp3c13_19770' => 'ppa', 'Pp3c14_22950' => 'ppa', 'Pp3c16_12160' => 'ppa', 'Pp3c27_7820' => 'ppa', 'Pp3c2_3490' => 'ppa', 'Pp3c3_23700' => 'ppa', 'Pp3c3_36520' => 'ppa', 'Pp3c4_15250' => 'ppa', 'PRCOL_00007002' => 'pco', 'Prupe.1G030600' => 'ppe', 'Prupe.1G030700' => 'ppe', 'Prupe.6G345200' => 'ppe', 'Prupe.8G230300' => 'ppe', 'Prupe.8G230500' => 'ppe', 'Psat3g059600' => 'psa', 'Psat5g200920' => 'psa', 'Psat6g056440' => 'psa', 'Psat6g057360' => 'psa', 'Psat6g134120' => 'psa', 'Psat6g134160' => 'psa', 'Psat7g008640' => 'psa', 'Psat7g185240' => 'psa', 'PSO017G1330' => 'pso', 'PSO063G6097' => 'pso', 'PSO170G0835' => 'pso', 'PSO170G2499' => 'pso', 'PSO210G5058' => 'pso', 'PSO210G6154' => 'pso', 'PSO585G0031' => 'pso', 'PSO832G0264' => 'pso', 'PSO832G4288' => 'pso', 'QL03p027355' => 'qlo', 'QL03p027430' => 'qlo', 'QL04p081380' => 'qlo', 'QL06p015642' => 'qlo', 'QL06p015650' => 'qlo', 'QL06p015686' => 'qlo', 'QL12p042927' => 'qlo', 'QL93p1863_0035' => 'qlo', 'RcHm_v2.0_Chr3g0450581' => 'rch', 'RcHm_v2.0_Chr4g0390371' => 'rch', 'RcHm_v2.0_Chr4g0390381' => 'rch', 'RcHm_v2.0_Chr4g0390491' => 'rch', 'RcHm_v2.0_Chr4g0390501' => 'rch', 'RcHm_v2.0_Chr6g0289231' => 'rch', 'Rhsim04G0190400' => 'rsi', 'Rhsim04G0190500' => 'rsi', 'Rhsim04G0190600' => 'rsi', 'Rhsim13G0031400' => 'rsi', 'Rhsim13G0165600' => 'rsi', 'RhsimUnG0114600' => 'rsi', 'RhsimUnG0114700' => 'rsi', 'Sabra02G0034800' => 'sbr', 'Sabra02G0035100' => 'sbr', 'Sabra05G0168600' => 'sbr', 'Sabra05G0168800' => 'sbr', 'Sabra08G0123700' => 'sbr', 'Sabra10G0031900' => 'sbr', 'Sabra13G0039000' => 'sbr', 'SalBow2G0782' => 'sbo', 'SalBow2G1403' => 'sbo', 'SalBow4G0074' => 'sbo', 'SalBow4G2635' => 'sbo', 'SalBow5G3010' => 'sbo', 'Sc05g0000870' => 'sci', 'Sc05g0000890' => 'sci', 'Sc13g0005000' => 'sci', 'Sc13g0005030' => 'sci', 'Sc19g0003790' => 'sci', 'Sc19g0003800' => 'sci', 'Sed0003467' => 'sed', 'Sed0009355' => 'sed', 'Sed0009894' => 'sed', 'Sed0011972' => 'sed', 'Sed0021483' => 'sed', 'Sed0021750' => 'sed', 'Sed0026279' => 'sed', 'SEGI_05312' => 'sgi', 'SEGI_10112' => 'sgi', 'SEGI_15835' => 'sgi', 'SEGI_30386' => 'sgi', 'SEGI_34122' => 'sgi', 'SEGI_35063' => 'sgi', 'SGA_v2.0_scaffold101G29794' => 'sas', 'SGA_v2.0_scaffold1G00573' => 'sas', 'SGA_v2.0_scaffold79G25637' => 'sas', 'SGA_v2.0_scaffold88G27283' => 'sas', 'SGA_v2.0_scaffold88G27285' => 'sas', 'SGA_v2.0_scaffold88G27331' => 'sas', 'SHI09937' => 'shi', 'SMO119G0302' => 'smo', 'SMO137G0231' => 'smo', 'SMO367G1151' => 'smo', 'Solyc02g082000.3' => 'sly', 'Solyc06g031670.3' => 'sly', 'Solyc06g053810.3' => 'sly', 'Solyc07g025457.1' => 'sly', 'Solyc08g059740.1' => 'sly', 'Solyc08g059750.3' => 'sly', 'Solyc09g083370.3' => 'sly', 'Solyc12g038950.3' => 'sly', 'Sopen02g026630' => 'spe', 'Sopen06g018930' => 'spe', 'Sopen06g018940' => 'spe', 'Sopen08g009460' => 'spe', 'Sopen09g032290' => 'spe', 'Sp1g03080' => 'spa', 'Sp1g03090' => 'spa', 'Sp1g05480' => 'spa', 'Sp2g07860' => 'spa', 'Sp2g08430' => 'spa', 'Sp2g08440' => 'spa', 'Sp2g26200' => 'spa', 'Sp4g13170' => 'spa', 'Sp6g33840' => 'spa', 'SpUn1204_0010' => 'spa', 'TAR365G0908' => 'tar', 'TAR381G1270' => 'tar', 'TAR381G1651' => 'tar', 'TAR625G1131' => 'tar', 'TAR633G0962' => 'tar', 'TAR633G1729' => 'tar', 'TAR633G1864' => 'tar', 'TAR636G0221' => 'tar', 'TAR636G0314' => 'tar', 'TAR636G3202' => 'tar', 'THA.LOC104800805' => 'tha', 'THA.LOC104801096' => 'tha', 'THA.LOC104801555' => 'tha', 'THA.LOC104808491' => 'tha', 'THA.LOC104808595' => 'tha', 'THA.LOC104815985' => 'tha', 'THA.LOC104822250' => 'tha', 'THA.LOC104826071' => 'tha', 'Thecc.01G265200' => 'tca', 'Thecc.01G265300' => 'tca', 'Thecc.01G265700' => 'tca', 'Thecc.03G109100' => 'tca', 'Thecc.04G245900' => 'tca', 'Thecc.04G246000' => 'tca', 'Thhalv10003334m.g' => 'esa', 'Thhalv10005508m.g' => 'esa', 'Thhalv10005643m.g' => 'esa', 'Thhalv10007316m.g' => 'esa', 'Thhalv10009006m.g' => 'esa', 'Thhalv10009309m.g' => 'esa', 'Thhalv10014917m.g' => 'esa', 'Thhalv10014919m.g' => 'esa', 'Thhalv10015393m.g' => 'esa', 'Thhalv10016515m.g' => 'esa', 'Thhalv10029242m.g' => 'esa', 'TPR.G16654' => 'tpr', 'TPR.G20589' => 'tpr', 'TPR.G23029' => 'tpr', 'TPR.G27731' => 'tpr', 'TPR.G28889' => 'tpr', 'TPR.G28899' => 'tpr', 'TPR.G30846' => 'tpr', 'TPR.G5452' => 'tpr', 'TPR.G5713' => 'tpr', 'TPR.G9046' => 'tpr', 'TPR.G9061' => 'tpr', 'TWI09G1075' => 'twi', 'TWI12G0806' => 'twi', 'TWI18G0108' => 'twi', 'TWI53G1361' => 'twi', 'TWI73G0185' => 'twi', 'TWI73G0427' => 'twi', 'unitig_37.g12001' => 'ugi', 'unitig_747.g21660' => 'ugi', 'unitig_748.g7232' => 'ugi', 'unitig_748.g7315' => 'ugi', 'unitig_85.g27262' => 'ugi', 'unitig_92.g28220' => 'ugi', 'vmacro02632' => 'vma', 'vmacro08410' => 'vma', 'vmacro08411' => 'vma', 'vmacro15407' => 'vma', 'VMungo0251G3619' => 'vmu', 'VMungo0720G1204' => 'vmu', 'VMungo0720G1918' => 'vmu', 'VMungo0720G2387' => 'vmu', 'VMungo0720G2961' => 'vmu', 'VMungo1215G2154' => 'vmu', 'VMungo1383G2411' => 'vmu', 'Zm00001eb051130' => 'zma', 'Zm00001eb116830' => 'zma', 'Zm00001eb116850' => 'zma', 'Zm00001eb151740' => 'zma', 'Zm00001eb292360' => 'zma', 'Zm00001eb301640' => 'zma' ), 'gf_id' => 'HOM05D000856', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000856' ), 'data_identifier' => 'HOM05D000856', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000856', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p00010' => 'bna', 'A03p04160' => 'bna', 'A03p17160' => 'bna', 'A04p23370' => 'bna', 'A05p14860' => 'bna', 'A08p37020' => 'bna', 'A09p08050' => 'bna', 'A09p66800' => 'bna', 'A09p67940' => 'bna', 'A10p02680' => 'bna', 'A10p05320' => 'bna', 'Aa31LG1G20560' => 'aar', 'Aa31LG1G20610' => 'aar', 'Aa31LG1G7810' => 'aar', 'Aa31LG5G3590' => 'aar', 'Aa31LG5G6140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3819' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4683' => 'aag', 'Actinidia04480' => 'ach', 'Actinidia05466' => 'ach', 'Actinidia08445' => 'ach', 'Actinidia21170' => 'ach', 'Actinidia24812' => 'ach', 'Actinidia24951' => 'ach', 'Actinidia40088' => 'ach', 'Ah.02g111660' => 'amhyb', 'Ah.11g048900' => 'amhyb', 'Ah.11g049910' => 'amhyb', 'AL1G13870' => 'aly', 'AL1G13880' => 'aly', 'AL1G16760' => 'aly', 'AL390U10020' => 'aly', 'AL4G25520' => 'aly', 'AL6G19890' => 'aly', 'AL6G19900' => 'aly', 'AL6G19910' => 'aly', 'AL8G40100' => 'aly', 'Aqoxy2G03562' => 'aox', 'Aqoxy5G00316' => 'aox', 'Aqoxy5G00926' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1628KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1H403S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2FU6SJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.882I6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8YRY2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YN1SN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AF70II' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZA8L1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F916KL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHRD8H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KTZ8QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S22EMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8M29T' => 'arhy', 'AT1G04270' => 'ath', 'AT1G04280' => 'ath', 'AT1G06750' => 'ath', 'AT1G33850' => 'ath', 'AT2G30630' => 'ath', 'AT5G09490' => 'ath', 'AT5G09500' => 'ath', 'AT5G09510' => 'ath', 'AT5G43640' => 'ath', 'AT5G63070' => 'ath', 'ATR0605G315' => 'atr', 'Atru.chr11.175' => 'acertr', 'Atru.chr11.653' => 'acertr', 'Atru.chr3.1616' => 'acertr', 'Atru.chr4.2230' => 'acertr', 'Atru.chr4.2232' => 'acertr', 'Atru.chr5.1598' => 'acertr', 'Atru.chr5.1600' => 'acertr', 'Atru.chr5.2188' => 'acertr', 'AUR62008326' => 'cqu', 'AUR62011922' => 'cqu', 'AUR62011924' => 'cqu', 'AUR62021771' => 'cqu', 'AUR62032237' => 'cqu', 'AUR62032240' => 'cqu', 'BcaB01g05572' => 'bca', 'BcaB02g10337' => 'bca', 'BcaB04g19944' => 'bca', 'BcaB05g21548' => 'bca', 'BcaB05g21549' => 'bca', 'BcaB05g23227' => 'bca', 'BcaB06g26256' => 'bca', 'BcaB06g26257' => 'bca', 'BcaB06g28379' => 'bca', 'BcaC02g11159' => 'bca', 'BcaC03g13258' => 'bca', 'BcaC03g13259' => 'bca', 'BcaC05g24456' => 'bca', 'BcaC05g24457' => 'bca', 'BcaC07g36922' => 'bca', 'BcaC07g36923' => 'bca', 'BcaC07g42050' => 'bca', 'BcaC07g42176' => 'bca', 'BcaC07g42195' => 'bca', 'BcaC07g42196' => 'bca', 'BcaNung06674' => 'bca', 'BolC2t06351H' => 'bol', 'BolC2t06352H' => 'bol', 'BolC3t12993H' => 'bol', 'BolC4t23525H' => 'bol', 'BolC4t27475H' => 'bol', 'BolC5t29025H' => 'bol', 'BolC5t29026H' => 'bol', 'BolC8t46898H' => 'bol', 'BolC8t46899H' => 'bol', 'BolC8t52630H' => 'bol', 'BolC8t52765H' => 'bol', 'BolC9t53824H' => 'bol', 'BraA03t09760Z' => 'bra', 'BraA03t10990Z' => 'bra', 'BraA05t20413Z' => 'bra', 'BraA08t35602Z' => 'bra', 'BraA09t36458Z' => 'bra', 'BraA09t42018Z' => 'bra', 'BraA09t42129Z' => 'bra', 'BraA10t42536Z' => 'bra', 'BraA10t42537Z' => 'bra', 'C01p10690' => 'bna', 'C02p03890' => 'bna', 'C02p03900' => 'bna', 'C03p04620' => 'bna', 'C04p19870' => 'bna', 'C04p59670' => 'bna', 'C05p02460' => 'bna', 'C05p02470' => 'bna', 'C08p00980' => 'bna', 'C08p00990' => 'bna', 'C08p51030' => 'bna', 'C08p52360' => 'bna', 'C09p09120' => 'bna', 'CAN.G19.15' => 'can', 'CAN.G251.10' => 'can', 'CAN.G251.9' => 'can', 'CAN.G398.24' => 'can', 'CAN.G410.32' => 'can', 'CAN.G881.2' => 'can', 'CANSAT01G3025' => 'cansat', 'CANSAT78G1211' => 'cansat', 'CANSAT78G1218' => 'cansat', 'CANSAT78G1521' => 'cansat', 'CANSAT78G1670' => 'cansat', 'CARHR003600' => 'chi', 'CARHR003610' => 'chi', 'CARHR006290' => 'chi', 'CARHR006430' => 'chi', 'CARHR124110' => 'chi', 'CARHR203870' => 'chi', 'CARHR203880' => 'chi', 'CARHR203890' => 'chi', 'CARHR276880' => 'chi', 'Carub.0001s0346' => 'cru', 'Carub.0001s0347' => 'cru', 'Carub.0001s0607' => 'cru', 'Carub.0003s2768' => 'cru', 'Carub.0003s2769' => 'cru', 'Carub.0004s1178' => 'cru', 'Carub.0006s0806' => 'cru', 'Carub.0006s0807' => 'cru', 'Carub.0006s0808' => 'cru', 'Carub.0008s0501' => 'cru', 'Carub.0008s2379' => 'cru', 'Ca_08655_v3' => 'car', 'Ca_08922_v3' => 'car', 'Ca_08923_v3' => 'car', 'Ca_09119_v3' => 'car', 'Ca_09703_v3' => 'car', 'Ca_09705_v3' => 'car', 'Ca_09835_v3' => 'car', 'Ca_26403_v3' => 'car', 'Ca_30719_v3' => 'car', 'CBR_g17958' => 'cbr', 'CBR_g40516' => 'cbr', 'Cc00_g05350' => 'ccan', 'Cc01_g18690' => 'ccan', 'Cc03_g04830' => 'ccan', 'Cc03_g04850' => 'ccan', 'CDE02G4469' => 'cde', 'CDE06G0883' => 'cde', 'CDE06G1295' => 'cde', 'CDE06G1390' => 'cde', 'CDE07G0584' => 'cde', 'CDE07G1084' => 'cde', 'CDE08G1259' => 'cde', 'Cfa002341' => 'cfa', 'Cfa024337' => 'cfa', 'Ciclev10004749m.g' => 'ccl', 'Ciclev10006127m.g' => 'ccl', 'Ciclev10019720m.g' => 'ccl', 'Ciclev10022652m.g' => 'ccl', 'CiPaw.01G190400' => 'cil', 'CiPaw.01G190500' => 'cil', 'CiPaw.02G116400' => 'cil', 'CiPaw.02G116500' => 'cil', 'CiPaw.04G183000' => 'cil', 'CiPaw.04G183300' => 'cil', 'ClCG05G004610' => 'cla', 'ClCG05G004620' => 'cla', 'ClCG06G006730' => 'cla', 'ClCG06G006740' => 'cla', 'ClCG11G003690' => 'cla', 'COL.COLO4_08276' => 'col', 'COL.COLO4_08277' => 'col', 'COL.COLO4_15787' => 'col', 'COL.COLO4_15789' => 'col', 'Cpa.g.c44815' => 'cpa', 'Cpa.g.sc52.144' => 'cpa', 'Cpa.g.sc58.46' => 'cpa', 'Cpa.g.sc58.47' => 'cpa', 'Cre08.g360900' => 'cre', 'CsaV3_2G013030' => 'csa', 'CsaV3_2G013050' => 'csa', 'CsaV3_2G015620' => 'csa', 'CsaV3_3G012590' => 'csa', 'CsaV3_3G012600' => 'csa', 'CSS0001641' => 'camsi', 'CSS0008310' => 'camsi', 'CSS0013011' => 'camsi', 'CSS0017147' => 'camsi', 'CSS0022970' => 'camsi', 'CSS0025655' => 'camsi', 'CSS0028665' => 'camsi', 'CSS0029117' => 'camsi', 'CSS0032024' => 'camsi', 'CSS0039681' => 'camsi', 'CSS0046516' => 'camsi', 'CSS0050307' => 'camsi', 'DCAR_005871' => 'dca', 'DCAR_007342' => 'dca', 'DCAR_024228' => 'dca', 'DCAR_027277' => 'dca', 'DCAR_030718' => 'dca', 'Dinv20287' => 'din', 'Dinv22461' => 'din', 'Dinv22464' => 'din', 'Dinv29912' => 'din', 'Dinv29913' => 'din', 'Dinv34580' => 'din', 'Dinv34582' => 'din', 'Dinv44632' => 'din', 'Duzib052G0266' => 'dzi', 'Duzib133G0907' => 'dzi', 'Duzib133G1034' => 'dzi', 'Duzib138G0207' => 'dzi', 'Duzib138G0491' => 'dzi', 'Duzib151G0812' => 'dzi', 'Duzib151G1166' => 'dzi', 'Duzib168G0192' => 'dzi', 'Duzib211G0077' => 'dzi', 'Duzib212G0429' => 'dzi', 'Duzib212G0472' => 'dzi', 'ECA233G2617' => 'eca', 'ECA236G4188' => 'eca', 'ECA240G0936' => 'eca', 'ECA240G1129' => 'eca', 'ECA247G0623' => 'eca', 'EL10Ac5g10451' => 'bvu', 'EL10Ac5g10453' => 'bvu', 'EL10Ac5g10894' => 'bvu', 'Eucgr.H00192' => 'egr', 'Eucgr.H00193' => 'egr', 'Eucgr.H00194' => 'egr', 'Eucgr.J01562' => 'egr', 'Eucgr.K03301' => 'egr', 'FAN02G0632' => 'fan', 'FAN05G5378' => 'fan', 'FAN09G3247' => 'fan', 'FAN12G0435' => 'fan', 'FAN12G2426' => 'fan', 'FAN14G1707' => 'fan', 'FAN14G4725' => 'fan', 'FAN15G2071' => 'fan', 'FAN17G3065' => 'fan', 'FAN19G1376' => 'fan', 'FAN20G0354' => 'fan', 'FAN20G2429' => 'fan', 'FAN20G2658' => 'fan', 'FAN24G2343' => 'fan', 'FAN27G2362' => 'fan', 'FAN28G1765' => 'fan', 'FvH4_1g16020' => 'fve', 'FvH4_2g04890' => 'fve', 'FvH4_2g22270' => 'fve', 'FvH4_4g02630' => 'fve', 'FvH4_4g02640' => 'fve', 'FvH4_6g02650' => 'fve', 'Glyma.02G140600' => 'gma', 'Glyma.03G159900' => 'gma', 'Glyma.05G234800' => 'gma', 'Glyma.07G269600' => 'gma', 'Glyma.08G042300' => 'gma', 'Glyma.10G033500' => 'gma', 'Glyma.10G185200' => 'gma', 'Glyma.17G004300' => 'gma', 'Glyma.19G161900' => 'gma', 'Glyma.20G205100' => 'gma', 'Glyma.20G205200' => 'gma', 'Gohir.A01G139101' => 'ghi', 'Gohir.A02G035600' => 'ghi', 'Gohir.A02G117901' => 'ghi', 'Gohir.A07G210100' => 'ghi', 'Gohir.A07G210200' => 'ghi', 'Gohir.A08G061100' => 'ghi', 'Gohir.A09G223000' => 'ghi', 'Gohir.A09G223100' => 'ghi', 'Gohir.A10G113900' => 'ghi', 'Gohir.A10G114000' => 'ghi', 'Gohir.D02G042300' => 'ghi', 'Gohir.D07G216100' => 'ghi', 'Gohir.D07G216200' => 'ghi', 'Gohir.D08G070400' => 'ghi', 'Gohir.D09G225000' => 'ghi', 'Gohir.D09G225100' => 'ghi', 'Gohir.D10G152300' => 'ghi', 'Gohir.D10G153200' => 'ghi', 'Gohir.D11G133701' => 'ghi', 'Gorai.004G074100' => 'gra', 'Gorai.005G046800' => 'gra', 'Gorai.006G246500' => 'gra', 'Gorai.006G246600' => 'gra', 'Gorai.007G142900' => 'gra', 'Gorai.011G171000' => 'gra', 'Gorai.011G171100' => 'gra', 'Gorai.013G104300' => 'gra', 'Gorai.013G104400' => 'gra', 'GSVIVG01000754001' => 'vvi', 'GSVIVG01000756001' => 'vvi', 'GSVIVG01010903001' => 'vvi', 'GSVIVG01017623001' => 'vvi', 'GSVIVG01018113001' => 'vvi', 'GSVIVG01018116001' => 'vvi', 'GSVIVG01018118001' => 'vvi', 'HanXRQChr03g0076211' => 'han', 'HanXRQChr03g0092431' => 'han', 'HanXRQChr03g0092441' => 'han', 'HanXRQChr03g0092591' => 'han', 'HanXRQChr03g0092671' => 'han', 'HanXRQChr03g0092681' => 'han', 'HanXRQChr03g0092691' => 'han', 'HanXRQChr03g0092701' => 'han', 'HanXRQChr03g0092721' => 'han', 'HanXRQChr03g0092731' => 'han', 'HanXRQChr04g0113681' => 'han', 'HanXRQChr10g0281371' => 'han', 'HanXRQChr11g0337141' => 'han', 'HanXRQChr13g0424521' => 'han', 'HanXRQChr13g0424531' => 'han', 'HanXRQChr13g0424541' => 'han', 'HanXRQChr16g0498221' => 'han', 'Haze_04377' => 'cav', 'Haze_11298' => 'cav', 'Haze_24547' => 'cav', 'Haze_24550' => 'cav', 'Haze_26587' => 'cav', 'Hma1.2p1_0650F.1_g195410' => 'hma', 'Hma1.2p1_0893F.1_g233470' => 'hma', 'HPP92_006508' => 'vpl', 'HPP92_024780' => 'vpl', 'Hund02688' => 'sun', 'Hund09380' => 'sun', 'Hund09381' => 'sun', 'Hund09832' => 'sun', 'Hund09833' => 'sun', 'Hund11351' => 'sun', 'Hund11513' => 'sun', 'Lalb_Chr06g0162591' => 'lal', 'Lalb_Chr06g0162601' => 'lal', 'Lalb_Chr06g0169321' => 'lal', 'Lalb_Chr09g0330951' => 'lal', 'Lalb_Chr16g0387631' => 'lal', 'Lalb_Chr21g0306241' => 'lal', 'Lalb_Chr25g0290051' => 'lal', 'Lalb_Chr25g0290061' => 'lal', 'Lalb_Chr25g0290071' => 'lal', 'Lj1g0003876' => 'lja', 'Lj1P1207T36' => 'lonja', 'Lj2C1156G12' => 'lonja', 'Lj3A793G39' => 'lonja', 'Lj3C580G2' => 'lonja', 'Lj3C780G2' => 'lonja', 'Lj3C780T4' => 'lonja', 'Lj3C793G9' => 'lonja', 'Lj4g0012960' => 'lja', 'Lj5g0021252' => 'lja', 'Lj5g0021484' => 'lja', 'Lj5g0024528' => 'lja', 'Lj6A399T12' => 'lonja', 'Lj6A656G65' => 'lonja', 'Lsat_1_v5_gn_3_125500' => 'lsa', 'Lsat_1_v5_gn_3_125540' => 'lsa', 'Lsat_1_v5_gn_5_72701' => 'lsa', 'Lsat_1_v5_gn_8_91560' => 'lsa', 'Lsat_1_v5_gn_9_9640' => 'lsa', 'Manes.01G200600' => 'mes', 'Manes.01G200700' => 'mes', 'Manes.03G168900' => 'mes', 'Manes.03G169000' => 'mes', 'Manes.05G085801' => 'mes', 'Manes.05G086200' => 'mes', 'Manes.15G036700' => 'mes', 'Manes.15G036900' => 'mes', 'Mapoly0004s0172' => 'mpo', 'Mapoly0023s0001' => 'mpo', 'Mapoly0142s0012' => 'mpo', 'MBI01_g32854_MAGBIO' => 'mbi', 'MBI11_g24427_MAGBIO' => 'mbi', 'MBI11_g47319_MAGBIO' => 'mbi', 'MCO01G433' => 'mco', 'MD00G1187800' => 'mdo', 'MD04G1226500' => 'mdo', 'MD05G1203900' => 'mdo', 'MD10G1191100' => 'mdo', 'MD12G1243500' => 'mdo', 'MD13G1207000' => 'mdo', 'MD13G1207100' => 'mdo', 'MD16G1208600' => 'mdo', 'Medtr1g050352' => 'mtr', 'Medtr1g070385' => 'mtr', 'Medtr1g070450' => 'mtr', 'Medtr1g075200' => 'mtr', 'Medtr1g075250' => 'mtr', 'Medtr1g075260' => 'mtr', 'Medtr1g475250' => 'mtr', 'Medtr4g075450' => 'mtr', 'Medtr7g096300' => 'mtr', 'Medtr8g105110' => 'mtr', 'MELO3C006470.2' => 'cme', 'MELO3C006471.2' => 'cme', 'MELO3C020772.2' => 'cme', 'MELO3C026780.2' => 'cme', 'MELO3C026781.2' => 'cme', 'Migut.D00390' => 'egut', 'Migut.G00435' => 'egut', 'Migut.G00436' => 'egut', 'Migut.G00718' => 'egut', 'MSTRG.21891' => 'ama', 'MSTRG.26910' => 'ama', 'MSTRG.4099' => 'ama', 'MSTRG.9925' => 'ama', 'Nitab4.5_0000165g0010' => 'nta', 'Nitab4.5_0000209g0180' => 'nta', 'Nitab4.5_0000244g0440' => 'nta', 'Nitab4.5_0000525g0220' => 'nta', 'Nitab4.5_0001597g0020' => 'nta', 'Nitab4.5_0001878g0040' => 'nta', 'Nitab4.5_0001878g0060' => 'nta', 'Nitab4.5_0002838g0100' => 'nta', 'Nitab4.5_0002838g0120' => 'nta', 'Nitab4.5_0004798g0030' => 'nta', 'Nitab4.5_0005420g0010' => 'nta', 'Nitab4.5_0005507g0010' => 'nta', 'Nitab4.5_0005574g0020' => 'nta', 'Nitab4.5_0005838g0010' => 'nta', 'Nitab4.5_0010580g0020' => 'nta', 'Nn1g02599' => 'nnu', 'Nn1g02608' => 'nnu', 'Nn3g17742' => 'nnu', 'Nn3g19534' => 'nnu', 'Nn3g19535' => 'nnu', 'Oeu008790.1' => 'oeu', 'Oeu008792.1' => 'oeu', 'Oeu032590.1' => 'oeu', 'Oeu035349.1' => 'oeu', 'Oeu049791.1' => 'oeu', 'Os01g0774500' => 'osa', 'Os03g0628800' => 'osa', 'Os03g0798600' => 'osa', 'Os05g0508800' => 'osa', 'Peaxi162Scf00036g02018' => 'pax', 'Peaxi162Scf00578g00032' => 'pax', 'Peaxi162Scf00578g00317' => 'pax', 'Peaxi162Scf00785g00114' => 'pax', 'Peaxi162Scf00813g00119' => 'pax', 'Peaxi162Scf00906g00227' => 'pax', 'PGR004G0875' => 'pgr', 'PGR004G2424' => 'pgr', 'PGR031G1239' => 'pgr', 'PGR031G2474' => 'pgr', 'PGR044G0423' => 'pgr', 'PGSC0003DMG400001128' => 'stu', 'PGSC0003DMG400007336' => 'stu', 'PGSC0003DMG400016318' => 'stu', 'PGSC0003DMG400016319' => 'stu', 'PGSC0003DMG400018074' => 'stu', 'Phvul.001G157700' => 'pvu', 'Phvul.002G148550' => 'pvu', 'Phvul.002G320200' => 'pvu', 'Phvul.003G089200' => 'pvu', 'Phvul.007G126000' => 'pvu', 'Phvul.007G126100' => 'pvu', 'Phvul.007G178000' => 'pvu', 'Phvul.007G178200' => 'pvu', 'Potri.002G043000' => 'ptr', 'Potri.002G043200' => 'ptr', 'Potri.003G123750' => 'ptr', 'Potri.005G055401' => 'ptr', 'Potri.005G219700' => 'ptr', 'Potri.005G220000' => 'ptr', 'Potri.008G161901' => 'ptr', 'Potri.008G162000' => 'ptr', 'Potri.008G162400' => 'ptr', 'Potri.010G076900' => 'ptr', 'Pp3c12_9180' => 'ppa', 'Pp3c13_19770' => 'ppa', 'Pp3c14_22950' => 'ppa', 'Pp3c16_12160' => 'ppa', 'Pp3c27_7820' => 'ppa', 'Pp3c2_3490' => 'ppa', 'Pp3c3_23700' => 'ppa', 'Pp3c3_36520' => 'ppa', 'Pp3c4_15250' => 'ppa', 'PRCOL_00007002' => 'pco', 'Prupe.1G030600' => 'ppe', 'Prupe.1G030700' => 'ppe', 'Prupe.6G345200' => 'ppe', 'Prupe.8G230300' => 'ppe', 'Prupe.8G230500' => 'ppe', 'Psat3g059600' => 'psa', 'Psat5g200920' => 'psa', 'Psat6g056440' => 'psa', 'Psat6g057360' => 'psa', 'Psat6g134120' => 'psa', 'Psat6g134160' => 'psa', 'Psat7g008640' => 'psa', 'Psat7g185240' => 'psa', 'PSO017G1330' => 'pso', 'PSO063G6097' => 'pso', 'PSO170G0835' => 'pso', 'PSO170G2499' => 'pso', 'PSO210G5058' => 'pso', 'PSO210G6154' => 'pso', 'PSO585G0031' => 'pso', 'PSO832G0264' => 'pso', 'PSO832G4288' => 'pso', 'QL03p027355' => 'qlo', 'QL03p027430' => 'qlo', 'QL04p081380' => 'qlo', 'QL06p015642' => 'qlo', 'QL06p015650' => 'qlo', 'QL06p015686' => 'qlo', 'QL12p042927' => 'qlo', 'QL93p1863_0035' => 'qlo', 'RcHm_v2.0_Chr3g0450581' => 'rch', 'RcHm_v2.0_Chr4g0390371' => 'rch', 'RcHm_v2.0_Chr4g0390381' => 'rch', 'RcHm_v2.0_Chr4g0390491' => 'rch', 'RcHm_v2.0_Chr4g0390501' => 'rch', 'RcHm_v2.0_Chr6g0289231' => 'rch', 'Rhsim04G0190400' => 'rsi', 'Rhsim04G0190500' => 'rsi', 'Rhsim04G0190600' => 'rsi', 'Rhsim13G0031400' => 'rsi', 'Rhsim13G0165600' => 'rsi', 'RhsimUnG0114600' => 'rsi', 'RhsimUnG0114700' => 'rsi', 'Sabra02G0034800' => 'sbr', 'Sabra02G0035100' => 'sbr', 'Sabra05G0168600' => 'sbr', 'Sabra05G0168800' => 'sbr', 'Sabra08G0123700' => 'sbr', 'Sabra10G0031900' => 'sbr', 'Sabra13G0039000' => 'sbr', 'SalBow2G0782' => 'sbo', 'SalBow2G1403' => 'sbo', 'SalBow4G0074' => 'sbo', 'SalBow4G2635' => 'sbo', 'SalBow5G3010' => 'sbo', 'Sc05g0000870' => 'sci', 'Sc05g0000890' => 'sci', 'Sc13g0005000' => 'sci', 'Sc13g0005030' => 'sci', 'Sc19g0003790' => 'sci', 'Sc19g0003800' => 'sci', 'Sed0003467' => 'sed', 'Sed0009355' => 'sed', 'Sed0009894' => 'sed', 'Sed0011972' => 'sed', 'Sed0021483' => 'sed', 'Sed0021750' => 'sed', 'Sed0026279' => 'sed', 'SEGI_05312' => 'sgi', 'SEGI_10112' => 'sgi', 'SEGI_15835' => 'sgi', 'SEGI_30386' => 'sgi', 'SEGI_34122' => 'sgi', 'SEGI_35063' => 'sgi', 'SGA_v2.0_scaffold101G29794' => 'sas', 'SGA_v2.0_scaffold1G00573' => 'sas', 'SGA_v2.0_scaffold79G25637' => 'sas', 'SGA_v2.0_scaffold88G27283' => 'sas', 'SGA_v2.0_scaffold88G27285' => 'sas', 'SGA_v2.0_scaffold88G27331' => 'sas', 'SHI09937' => 'shi', 'SMO119G0302' => 'smo', 'SMO137G0231' => 'smo', 'SMO367G1151' => 'smo', 'Solyc02g082000.3' => 'sly', 'Solyc06g031670.3' => 'sly', 'Solyc06g053810.3' => 'sly', 'Solyc07g025457.1' => 'sly', 'Solyc08g059740.1' => 'sly', 'Solyc08g059750.3' => 'sly', 'Solyc09g083370.3' => 'sly', 'Solyc12g038950.3' => 'sly', 'Sopen02g026630' => 'spe', 'Sopen06g018930' => 'spe', 'Sopen06g018940' => 'spe', 'Sopen08g009460' => 'spe', 'Sopen09g032290' => 'spe', 'Sp1g03080' => 'spa', 'Sp1g03090' => 'spa', 'Sp1g05480' => 'spa', 'Sp2g07860' => 'spa', 'Sp2g08430' => 'spa', 'Sp2g08440' => 'spa', 'Sp2g26200' => 'spa', 'Sp4g13170' => 'spa', 'Sp6g33840' => 'spa', 'SpUn1204_0010' => 'spa', 'TAR365G0908' => 'tar', 'TAR381G1270' => 'tar', 'TAR381G1651' => 'tar', 'TAR625G1131' => 'tar', 'TAR633G0962' => 'tar', 'TAR633G1729' => 'tar', 'TAR633G1864' => 'tar', 'TAR636G0221' => 'tar', 'TAR636G0314' => 'tar', 'TAR636G3202' => 'tar', 'THA.LOC104800805' => 'tha', 'THA.LOC104801096' => 'tha', 'THA.LOC104801555' => 'tha', 'THA.LOC104808491' => 'tha', 'THA.LOC104808595' => 'tha', 'THA.LOC104815985' => 'tha', 'THA.LOC104822250' => 'tha', 'THA.LOC104826071' => 'tha', 'Thecc.01G265200' => 'tca', 'Thecc.01G265300' => 'tca', 'Thecc.01G265700' => 'tca', 'Thecc.03G109100' => 'tca', 'Thecc.04G245900' => 'tca', 'Thecc.04G246000' => 'tca', 'Thhalv10003334m.g' => 'esa', 'Thhalv10005508m.g' => 'esa', 'Thhalv10005643m.g' => 'esa', 'Thhalv10007316m.g' => 'esa', 'Thhalv10009006m.g' => 'esa', 'Thhalv10009309m.g' => 'esa', 'Thhalv10014917m.g' => 'esa', 'Thhalv10014919m.g' => 'esa', 'Thhalv10015393m.g' => 'esa', 'Thhalv10016515m.g' => 'esa', 'Thhalv10029242m.g' => 'esa', 'TPR.G16654' => 'tpr', 'TPR.G20589' => 'tpr', 'TPR.G23029' => 'tpr', 'TPR.G27731' => 'tpr', 'TPR.G28889' => 'tpr', 'TPR.G28899' => 'tpr', 'TPR.G30846' => 'tpr', 'TPR.G5452' => 'tpr', 'TPR.G5713' => 'tpr', 'TPR.G9046' => 'tpr', 'TPR.G9061' => 'tpr', 'TWI09G1075' => 'twi', 'TWI12G0806' => 'twi', 'TWI18G0108' => 'twi', 'TWI53G1361' => 'twi', 'TWI73G0185' => 'twi', 'TWI73G0427' => 'twi', 'unitig_37.g12001' => 'ugi', 'unitig_747.g21660' => 'ugi', 'unitig_748.g7232' => 'ugi', 'unitig_748.g7315' => 'ugi', 'unitig_85.g27262' => 'ugi', 'unitig_92.g28220' => 'ugi', 'vmacro02632' => 'vma', 'vmacro08410' => 'vma', 'vmacro08411' => 'vma', 'vmacro15407' => 'vma', 'VMungo0251G3619' => 'vmu', 'VMungo0720G1204' => 'vmu', 'VMungo0720G1918' => 'vmu', 'VMungo0720G2387' => 'vmu', 'VMungo0720G2961' => 'vmu', 'VMungo1215G2154' => 'vmu', 'VMungo1383G2411' => 'vmu', 'Zm00001eb051130' => 'zma', 'Zm00001eb116830' => 'zma', 'Zm00001eb116850' => 'zma', 'Zm00001eb151740' => 'zma', 'Zm00001eb292360' => 'zma', 'Zm00001eb301640' => 'zma' ) $gf_id = 'HOM05D000856' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000856' ) $data_identifier = 'HOM05D000856' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 13, 'ath' => (int) 10, 'atr' => (int) 1, 'acertr' => (int) 8, 'cqu' => (int) 6, 'bca' => (int) 21, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 11, 'car' => (int) 9, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 8, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 5, 'fan' => (int) 16, 'fve' => (int) 6, 'gma' => (int) 11, 'ghi' => (int) 19, 'gra' => (int) 9, 'vvi' => (int) 7, 'han' => (int) 17, 'cav' => (int) 5, 'hma' => (int) 2, 'vpl' => (int) 2, 'sun' => (int) 7, 'lal' => (int) 9, 'lja' => (int) 5, 'lonja' => (int) 9, 'lsa' => (int) 5, 'mes' => (int) 8, 'mpo' => (int) 3, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 10, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 15, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 9, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 9, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 6, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 5, 'spa' => (int) 10, 'tar' => (int) 10, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 11, 'tpr' => (int) 11, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 4, 'vmu' => (int) 7, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb301640' $species_info = array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ) $local_species = 'tar' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000856', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p00010' => 'bna', 'A03p04160' => 'bna', 'A03p17160' => 'bna', 'A04p23370' => 'bna', 'A05p14860' => 'bna', 'A08p37020' => 'bna', 'A09p08050' => 'bna', 'A09p66800' => 'bna', 'A09p67940' => 'bna', 'A10p02680' => 'bna', 'A10p05320' => 'bna', 'Aa31LG1G20560' => 'aar', 'Aa31LG1G20610' => 'aar', 'Aa31LG1G7810' => 'aar', 'Aa31LG5G3590' => 'aar', 'Aa31LG5G6140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3819' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4683' => 'aag', 'Actinidia04480' => 'ach', 'Actinidia05466' => 'ach', 'Actinidia08445' => 'ach', 'Actinidia21170' => 'ach', 'Actinidia24812' => 'ach', 'Actinidia24951' => 'ach', 'Actinidia40088' => 'ach', 'Ah.02g111660' => 'amhyb', 'Ah.11g048900' => 'amhyb', 'Ah.11g049910' => 'amhyb', 'AL1G13870' => 'aly', 'AL1G13880' => 'aly', 'AL1G16760' => 'aly', 'AL390U10020' => 'aly', 'AL4G25520' => 'aly', 'AL6G19890' => 'aly', 'AL6G19900' => 'aly', 'AL6G19910' => 'aly', 'AL8G40100' => 'aly', 'Aqoxy2G03562' => 'aox', 'Aqoxy5G00316' => 'aox', 'Aqoxy5G00926' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1628KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1H403S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2FU6SJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.882I6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8YRY2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YN1SN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AF70II' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZA8L1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F916KL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHRD8H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KTZ8QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S22EMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8M29T' => 'arhy', 'AT1G04270' => 'ath', 'AT1G04280' => 'ath', 'AT1G06750' => 'ath', 'AT1G33850' => 'ath', 'AT2G30630' => 'ath', 'AT5G09490' => 'ath', 'AT5G09500' => 'ath', 'AT5G09510' => 'ath', 'AT5G43640' => 'ath', 'AT5G63070' => 'ath', 'ATR0605G315' => 'atr', 'Atru.chr11.175' => 'acertr', 'Atru.chr11.653' => 'acertr', 'Atru.chr3.1616' => 'acertr', 'Atru.chr4.2230' => 'acertr', 'Atru.chr4.2232' => 'acertr', 'Atru.chr5.1598' => 'acertr', 'Atru.chr5.1600' => 'acertr', 'Atru.chr5.2188' => 'acertr', 'AUR62008326' => 'cqu', 'AUR62011922' => 'cqu', 'AUR62011924' => 'cqu', 'AUR62021771' => 'cqu', 'AUR62032237' => 'cqu', 'AUR62032240' => 'cqu', 'BcaB01g05572' => 'bca', 'BcaB02g10337' => 'bca', 'BcaB04g19944' => 'bca', 'BcaB05g21548' => 'bca', 'BcaB05g21549' => 'bca', 'BcaB05g23227' => 'bca', 'BcaB06g26256' => 'bca', 'BcaB06g26257' => 'bca', 'BcaB06g28379' => 'bca', 'BcaC02g11159' => 'bca', 'BcaC03g13258' => 'bca', 'BcaC03g13259' => 'bca', 'BcaC05g24456' => 'bca', 'BcaC05g24457' => 'bca', 'BcaC07g36922' => 'bca', 'BcaC07g36923' => 'bca', 'BcaC07g42050' => 'bca', 'BcaC07g42176' => 'bca', 'BcaC07g42195' => 'bca', 'BcaC07g42196' => 'bca', 'BcaNung06674' => 'bca', 'BolC2t06351H' => 'bol', 'BolC2t06352H' => 'bol', 'BolC3t12993H' => 'bol', 'BolC4t23525H' => 'bol', 'BolC4t27475H' => 'bol', 'BolC5t29025H' => 'bol', 'BolC5t29026H' => 'bol', 'BolC8t46898H' => 'bol', 'BolC8t46899H' => 'bol', 'BolC8t52630H' => 'bol', 'BolC8t52765H' => 'bol', 'BolC9t53824H' => 'bol', 'BraA03t09760Z' => 'bra', 'BraA03t10990Z' => 'bra', 'BraA05t20413Z' => 'bra', 'BraA08t35602Z' => 'bra', 'BraA09t36458Z' => 'bra', 'BraA09t42018Z' => 'bra', 'BraA09t42129Z' => 'bra', 'BraA10t42536Z' => 'bra', 'BraA10t42537Z' => 'bra', 'C01p10690' => 'bna', 'C02p03890' => 'bna', 'C02p03900' => 'bna', 'C03p04620' => 'bna', 'C04p19870' => 'bna', 'C04p59670' => 'bna', 'C05p02460' => 'bna', 'C05p02470' => 'bna', 'C08p00980' => 'bna', 'C08p00990' => 'bna', 'C08p51030' => 'bna', 'C08p52360' => 'bna', 'C09p09120' => 'bna', 'CAN.G19.15' => 'can', 'CAN.G251.10' => 'can', 'CAN.G251.9' => 'can', 'CAN.G398.24' => 'can', 'CAN.G410.32' => 'can', 'CAN.G881.2' => 'can', 'CANSAT01G3025' => 'cansat', 'CANSAT78G1211' => 'cansat', 'CANSAT78G1218' => 'cansat', 'CANSAT78G1521' => 'cansat', 'CANSAT78G1670' => 'cansat', 'CARHR003600' => 'chi', 'CARHR003610' => 'chi', 'CARHR006290' => 'chi', 'CARHR006430' => 'chi', 'CARHR124110' => 'chi', 'CARHR203870' => 'chi', 'CARHR203880' => 'chi', 'CARHR203890' => 'chi', 'CARHR276880' => 'chi', 'Carub.0001s0346' => 'cru', 'Carub.0001s0347' => 'cru', 'Carub.0001s0607' => 'cru', 'Carub.0003s2768' => 'cru', 'Carub.0003s2769' => 'cru', 'Carub.0004s1178' => 'cru', 'Carub.0006s0806' => 'cru', 'Carub.0006s0807' => 'cru', 'Carub.0006s0808' => 'cru', 'Carub.0008s0501' => 'cru', 'Carub.0008s2379' => 'cru', 'Ca_08655_v3' => 'car', 'Ca_08922_v3' => 'car', 'Ca_08923_v3' => 'car', 'Ca_09119_v3' => 'car', 'Ca_09703_v3' => 'car', 'Ca_09705_v3' => 'car', 'Ca_09835_v3' => 'car', 'Ca_26403_v3' => 'car', 'Ca_30719_v3' => 'car', 'CBR_g17958' => 'cbr', 'CBR_g40516' => 'cbr', 'Cc00_g05350' => 'ccan', 'Cc01_g18690' => 'ccan', 'Cc03_g04830' => 'ccan', 'Cc03_g04850' => 'ccan', 'CDE02G4469' => 'cde', 'CDE06G0883' => 'cde', 'CDE06G1295' => 'cde', 'CDE06G1390' => 'cde', 'CDE07G0584' => 'cde', 'CDE07G1084' => 'cde', 'CDE08G1259' => 'cde', 'Cfa002341' => 'cfa', 'Cfa024337' => 'cfa', 'Ciclev10004749m.g' => 'ccl', 'Ciclev10006127m.g' => 'ccl', 'Ciclev10019720m.g' => 'ccl', 'Ciclev10022652m.g' => 'ccl', 'CiPaw.01G190400' => 'cil', 'CiPaw.01G190500' => 'cil', 'CiPaw.02G116400' => 'cil', 'CiPaw.02G116500' => 'cil', 'CiPaw.04G183000' => 'cil', 'CiPaw.04G183300' => 'cil', 'ClCG05G004610' => 'cla', 'ClCG05G004620' => 'cla', 'ClCG06G006730' => 'cla', 'ClCG06G006740' => 'cla', 'ClCG11G003690' => 'cla', 'COL.COLO4_08276' => 'col', 'COL.COLO4_08277' => 'col', 'COL.COLO4_15787' => 'col', 'COL.COLO4_15789' => 'col', 'Cpa.g.c44815' => 'cpa', 'Cpa.g.sc52.144' => 'cpa', 'Cpa.g.sc58.46' => 'cpa', 'Cpa.g.sc58.47' => 'cpa', 'Cre08.g360900' => 'cre', 'CsaV3_2G013030' => 'csa', 'CsaV3_2G013050' => 'csa', 'CsaV3_2G015620' => 'csa', 'CsaV3_3G012590' => 'csa', 'CsaV3_3G012600' => 'csa', 'CSS0001641' => 'camsi', 'CSS0008310' => 'camsi', 'CSS0013011' => 'camsi', 'CSS0017147' => 'camsi', 'CSS0022970' => 'camsi', 'CSS0025655' => 'camsi', 'CSS0028665' => 'camsi', 'CSS0029117' => 'camsi', 'CSS0032024' => 'camsi', 'CSS0039681' => 'camsi', 'CSS0046516' => 'camsi', 'CSS0050307' => 'camsi', 'DCAR_005871' => 'dca', 'DCAR_007342' => 'dca', 'DCAR_024228' => 'dca', 'DCAR_027277' => 'dca', 'DCAR_030718' => 'dca', 'Dinv20287' => 'din', 'Dinv22461' => 'din', 'Dinv22464' => 'din', 'Dinv29912' => 'din', 'Dinv29913' => 'din', 'Dinv34580' => 'din', 'Dinv34582' => 'din', 'Dinv44632' => 'din', 'Duzib052G0266' => 'dzi', 'Duzib133G0907' => 'dzi', 'Duzib133G1034' => 'dzi', 'Duzib138G0207' => 'dzi', 'Duzib138G0491' => 'dzi', 'Duzib151G0812' => 'dzi', 'Duzib151G1166' => 'dzi', 'Duzib168G0192' => 'dzi', 'Duzib211G0077' => 'dzi', 'Duzib212G0429' => 'dzi', 'Duzib212G0472' => 'dzi', 'ECA233G2617' => 'eca', 'ECA236G4188' => 'eca', 'ECA240G0936' => 'eca', 'ECA240G1129' => 'eca', 'ECA247G0623' => 'eca', 'EL10Ac5g10451' => 'bvu', 'EL10Ac5g10453' => 'bvu', 'EL10Ac5g10894' => 'bvu', 'Eucgr.H00192' => 'egr', 'Eucgr.H00193' => 'egr', 'Eucgr.H00194' => 'egr', 'Eucgr.J01562' => 'egr', 'Eucgr.K03301' => 'egr', 'FAN02G0632' => 'fan', 'FAN05G5378' => 'fan', 'FAN09G3247' => 'fan', 'FAN12G0435' => 'fan', 'FAN12G2426' => 'fan', 'FAN14G1707' => 'fan', 'FAN14G4725' => 'fan', 'FAN15G2071' => 'fan', 'FAN17G3065' => 'fan', 'FAN19G1376' => 'fan', 'FAN20G0354' => 'fan', 'FAN20G2429' => 'fan', 'FAN20G2658' => 'fan', 'FAN24G2343' => 'fan', 'FAN27G2362' => 'fan', 'FAN28G1765' => 'fan', 'FvH4_1g16020' => 'fve', 'FvH4_2g04890' => 'fve', 'FvH4_2g22270' => 'fve', 'FvH4_4g02630' => 'fve', 'FvH4_4g02640' => 'fve', 'FvH4_6g02650' => 'fve', 'Glyma.02G140600' => 'gma', 'Glyma.03G159900' => 'gma', 'Glyma.05G234800' => 'gma', 'Glyma.07G269600' => 'gma', 'Glyma.08G042300' => 'gma', 'Glyma.10G033500' => 'gma', 'Glyma.10G185200' => 'gma', 'Glyma.17G004300' => 'gma', 'Glyma.19G161900' => 'gma', 'Glyma.20G205100' => 'gma', 'Glyma.20G205200' => 'gma', 'Gohir.A01G139101' => 'ghi', 'Gohir.A02G035600' => 'ghi', 'Gohir.A02G117901' => 'ghi', 'Gohir.A07G210100' => 'ghi', 'Gohir.A07G210200' => 'ghi', 'Gohir.A08G061100' => 'ghi', 'Gohir.A09G223000' => 'ghi', 'Gohir.A09G223100' => 'ghi', 'Gohir.A10G113900' => 'ghi', 'Gohir.A10G114000' => 'ghi', 'Gohir.D02G042300' => 'ghi', 'Gohir.D07G216100' => 'ghi', 'Gohir.D07G216200' => 'ghi', 'Gohir.D08G070400' => 'ghi', 'Gohir.D09G225000' => 'ghi', 'Gohir.D09G225100' => 'ghi', 'Gohir.D10G152300' => 'ghi', 'Gohir.D10G153200' => 'ghi', 'Gohir.D11G133701' => 'ghi', 'Gorai.004G074100' => 'gra', 'Gorai.005G046800' => 'gra', 'Gorai.006G246500' => 'gra', 'Gorai.006G246600' => 'gra', 'Gorai.007G142900' => 'gra', 'Gorai.011G171000' => 'gra', 'Gorai.011G171100' => 'gra', 'Gorai.013G104300' => 'gra', 'Gorai.013G104400' => 'gra', 'GSVIVG01000754001' => 'vvi', 'GSVIVG01000756001' => 'vvi', 'GSVIVG01010903001' => 'vvi', 'GSVIVG01017623001' => 'vvi', 'GSVIVG01018113001' => 'vvi', 'GSVIVG01018116001' => 'vvi', 'GSVIVG01018118001' => 'vvi', 'HanXRQChr03g0076211' => 'han', 'HanXRQChr03g0092431' => 'han', 'HanXRQChr03g0092441' => 'han', 'HanXRQChr03g0092591' => 'han', 'HanXRQChr03g0092671' => 'han', 'HanXRQChr03g0092681' => 'han', 'HanXRQChr03g0092691' => 'han', 'HanXRQChr03g0092701' => 'han', 'HanXRQChr03g0092721' => 'han', 'HanXRQChr03g0092731' => 'han', 'HanXRQChr04g0113681' => 'han', 'HanXRQChr10g0281371' => 'han', 'HanXRQChr11g0337141' => 'han', 'HanXRQChr13g0424521' => 'han', 'HanXRQChr13g0424531' => 'han', 'HanXRQChr13g0424541' => 'han', 'HanXRQChr16g0498221' => 'han', 'Haze_04377' => 'cav', 'Haze_11298' => 'cav', 'Haze_24547' => 'cav', 'Haze_24550' => 'cav', 'Haze_26587' => 'cav', 'Hma1.2p1_0650F.1_g195410' => 'hma', 'Hma1.2p1_0893F.1_g233470' => 'hma', 'HPP92_006508' => 'vpl', 'HPP92_024780' => 'vpl', 'Hund02688' => 'sun', 'Hund09380' => 'sun', 'Hund09381' => 'sun', 'Hund09832' => 'sun', 'Hund09833' => 'sun', 'Hund11351' => 'sun', 'Hund11513' => 'sun', 'Lalb_Chr06g0162591' => 'lal', 'Lalb_Chr06g0162601' => 'lal', 'Lalb_Chr06g0169321' => 'lal', 'Lalb_Chr09g0330951' => 'lal', 'Lalb_Chr16g0387631' => 'lal', 'Lalb_Chr21g0306241' => 'lal', 'Lalb_Chr25g0290051' => 'lal', 'Lalb_Chr25g0290061' => 'lal', 'Lalb_Chr25g0290071' => 'lal', 'Lj1g0003876' => 'lja', 'Lj1P1207T36' => 'lonja', 'Lj2C1156G12' => 'lonja', 'Lj3A793G39' => 'lonja', 'Lj3C580G2' => 'lonja', 'Lj3C780G2' => 'lonja', 'Lj3C780T4' => 'lonja', 'Lj3C793G9' => 'lonja', 'Lj4g0012960' => 'lja', 'Lj5g0021252' => 'lja', 'Lj5g0021484' => 'lja', 'Lj5g0024528' => 'lja', 'Lj6A399T12' => 'lonja', 'Lj6A656G65' => 'lonja', 'Lsat_1_v5_gn_3_125500' => 'lsa', 'Lsat_1_v5_gn_3_125540' => 'lsa', 'Lsat_1_v5_gn_5_72701' => 'lsa', 'Lsat_1_v5_gn_8_91560' => 'lsa', 'Lsat_1_v5_gn_9_9640' => 'lsa', 'Manes.01G200600' => 'mes', 'Manes.01G200700' => 'mes', 'Manes.03G168900' => 'mes', 'Manes.03G169000' => 'mes', 'Manes.05G085801' => 'mes', 'Manes.05G086200' => 'mes', 'Manes.15G036700' => 'mes', 'Manes.15G036900' => 'mes', 'Mapoly0004s0172' => 'mpo', 'Mapoly0023s0001' => 'mpo', 'Mapoly0142s0012' => 'mpo', 'MBI01_g32854_MAGBIO' => 'mbi', 'MBI11_g24427_MAGBIO' => 'mbi', 'MBI11_g47319_MAGBIO' => 'mbi', 'MCO01G433' => 'mco', 'MD00G1187800' => 'mdo', 'MD04G1226500' => 'mdo', 'MD05G1203900' => 'mdo', 'MD10G1191100' => 'mdo', 'MD12G1243500' => 'mdo', 'MD13G1207000' => 'mdo', 'MD13G1207100' => 'mdo', 'MD16G1208600' => 'mdo', 'Medtr1g050352' => 'mtr', 'Medtr1g070385' => 'mtr', 'Medtr1g070450' => 'mtr', 'Medtr1g075200' => 'mtr', 'Medtr1g075250' => 'mtr', 'Medtr1g075260' => 'mtr', 'Medtr1g475250' => 'mtr', 'Medtr4g075450' => 'mtr', 'Medtr7g096300' => 'mtr', 'Medtr8g105110' => 'mtr', 'MELO3C006470.2' => 'cme', 'MELO3C006471.2' => 'cme', 'MELO3C020772.2' => 'cme', 'MELO3C026780.2' => 'cme', 'MELO3C026781.2' => 'cme', 'Migut.D00390' => 'egut', 'Migut.G00435' => 'egut', 'Migut.G00436' => 'egut', 'Migut.G00718' => 'egut', 'MSTRG.21891' => 'ama', 'MSTRG.26910' => 'ama', 'MSTRG.4099' => 'ama', 'MSTRG.9925' => 'ama', 'Nitab4.5_0000165g0010' => 'nta', 'Nitab4.5_0000209g0180' => 'nta', 'Nitab4.5_0000244g0440' => 'nta', 'Nitab4.5_0000525g0220' => 'nta', 'Nitab4.5_0001597g0020' => 'nta', 'Nitab4.5_0001878g0040' => 'nta', 'Nitab4.5_0001878g0060' => 'nta', 'Nitab4.5_0002838g0100' => 'nta', 'Nitab4.5_0002838g0120' => 'nta', 'Nitab4.5_0004798g0030' => 'nta', 'Nitab4.5_0005420g0010' => 'nta', 'Nitab4.5_0005507g0010' => 'nta', 'Nitab4.5_0005574g0020' => 'nta', 'Nitab4.5_0005838g0010' => 'nta', 'Nitab4.5_0010580g0020' => 'nta', 'Nn1g02599' => 'nnu', 'Nn1g02608' => 'nnu', 'Nn3g17742' => 'nnu', 'Nn3g19534' => 'nnu', 'Nn3g19535' => 'nnu', 'Oeu008790.1' => 'oeu', 'Oeu008792.1' => 'oeu', 'Oeu032590.1' => 'oeu', 'Oeu035349.1' => 'oeu', 'Oeu049791.1' => 'oeu', 'Os01g0774500' => 'osa', 'Os03g0628800' => 'osa', 'Os03g0798600' => 'osa', 'Os05g0508800' => 'osa', 'Peaxi162Scf00036g02018' => 'pax', 'Peaxi162Scf00578g00032' => 'pax', 'Peaxi162Scf00578g00317' => 'pax', 'Peaxi162Scf00785g00114' => 'pax', 'Peaxi162Scf00813g00119' => 'pax', 'Peaxi162Scf00906g00227' => 'pax', 'PGR004G0875' => 'pgr', 'PGR004G2424' => 'pgr', 'PGR031G1239' => 'pgr', 'PGR031G2474' => 'pgr', 'PGR044G0423' => 'pgr', 'PGSC0003DMG400001128' => 'stu', 'PGSC0003DMG400007336' => 'stu', 'PGSC0003DMG400016318' => 'stu', 'PGSC0003DMG400016319' => 'stu', 'PGSC0003DMG400018074' => 'stu', 'Phvul.001G157700' => 'pvu', 'Phvul.002G148550' => 'pvu', 'Phvul.002G320200' => 'pvu', 'Phvul.003G089200' => 'pvu', 'Phvul.007G126000' => 'pvu', 'Phvul.007G126100' => 'pvu', 'Phvul.007G178000' => 'pvu', 'Phvul.007G178200' => 'pvu', 'Potri.002G043000' => 'ptr', 'Potri.002G043200' => 'ptr', 'Potri.003G123750' => 'ptr', 'Potri.005G055401' => 'ptr', 'Potri.005G219700' => 'ptr', 'Potri.005G220000' => 'ptr', 'Potri.008G161901' => 'ptr', 'Potri.008G162000' => 'ptr', 'Potri.008G162400' => 'ptr', 'Potri.010G076900' => 'ptr', 'Pp3c12_9180' => 'ppa', 'Pp3c13_19770' => 'ppa', 'Pp3c14_22950' => 'ppa', 'Pp3c16_12160' => 'ppa', 'Pp3c27_7820' => 'ppa', 'Pp3c2_3490' => 'ppa', 'Pp3c3_23700' => 'ppa', 'Pp3c3_36520' => 'ppa', 'Pp3c4_15250' => 'ppa', 'PRCOL_00007002' => 'pco', 'Prupe.1G030600' => 'ppe', 'Prupe.1G030700' => 'ppe', 'Prupe.6G345200' => 'ppe', 'Prupe.8G230300' => 'ppe', 'Prupe.8G230500' => 'ppe', 'Psat3g059600' => 'psa', 'Psat5g200920' => 'psa', 'Psat6g056440' => 'psa', 'Psat6g057360' => 'psa', 'Psat6g134120' => 'psa', 'Psat6g134160' => 'psa', 'Psat7g008640' => 'psa', 'Psat7g185240' => 'psa', 'PSO017G1330' => 'pso', 'PSO063G6097' => 'pso', 'PSO170G0835' => 'pso', 'PSO170G2499' => 'pso', 'PSO210G5058' => 'pso', 'PSO210G6154' => 'pso', 'PSO585G0031' => 'pso', 'PSO832G0264' => 'pso', 'PSO832G4288' => 'pso', 'QL03p027355' => 'qlo', 'QL03p027430' => 'qlo', 'QL04p081380' => 'qlo', 'QL06p015642' => 'qlo', 'QL06p015650' => 'qlo', 'QL06p015686' => 'qlo', 'QL12p042927' => 'qlo', 'QL93p1863_0035' => 'qlo', 'RcHm_v2.0_Chr3g0450581' => 'rch', 'RcHm_v2.0_Chr4g0390371' => 'rch', 'RcHm_v2.0_Chr4g0390381' => 'rch', 'RcHm_v2.0_Chr4g0390491' => 'rch', 'RcHm_v2.0_Chr4g0390501' => 'rch', 'RcHm_v2.0_Chr6g0289231' => 'rch', 'Rhsim04G0190400' => 'rsi', 'Rhsim04G0190500' => 'rsi', 'Rhsim04G0190600' => 'rsi', 'Rhsim13G0031400' => 'rsi', 'Rhsim13G0165600' => 'rsi', 'RhsimUnG0114600' => 'rsi', 'RhsimUnG0114700' => 'rsi', 'Sabra02G0034800' => 'sbr', 'Sabra02G0035100' => 'sbr', 'Sabra05G0168600' => 'sbr', 'Sabra05G0168800' => 'sbr', 'Sabra08G0123700' => 'sbr', 'Sabra10G0031900' => 'sbr', 'Sabra13G0039000' => 'sbr', 'SalBow2G0782' => 'sbo', 'SalBow2G1403' => 'sbo', 'SalBow4G0074' => 'sbo', 'SalBow4G2635' => 'sbo', 'SalBow5G3010' => 'sbo', 'Sc05g0000870' => 'sci', 'Sc05g0000890' => 'sci', 'Sc13g0005000' => 'sci', 'Sc13g0005030' => 'sci', 'Sc19g0003790' => 'sci', 'Sc19g0003800' => 'sci', 'Sed0003467' => 'sed', 'Sed0009355' => 'sed', 'Sed0009894' => 'sed', 'Sed0011972' => 'sed', 'Sed0021483' => 'sed', 'Sed0021750' => 'sed', 'Sed0026279' => 'sed', 'SEGI_05312' => 'sgi', 'SEGI_10112' => 'sgi', 'SEGI_15835' => 'sgi', 'SEGI_30386' => 'sgi', 'SEGI_34122' => 'sgi', 'SEGI_35063' => 'sgi', 'SGA_v2.0_scaffold101G29794' => 'sas', 'SGA_v2.0_scaffold1G00573' => 'sas', 'SGA_v2.0_scaffold79G25637' => 'sas', 'SGA_v2.0_scaffold88G27283' => 'sas', 'SGA_v2.0_scaffold88G27285' => 'sas', 'SGA_v2.0_scaffold88G27331' => 'sas', 'SHI09937' => 'shi', 'SMO119G0302' => 'smo', 'SMO137G0231' => 'smo', 'SMO367G1151' => 'smo', 'Solyc02g082000.3' => 'sly', 'Solyc06g031670.3' => 'sly', 'Solyc06g053810.3' => 'sly', 'Solyc07g025457.1' => 'sly', 'Solyc08g059740.1' => 'sly', 'Solyc08g059750.3' => 'sly', 'Solyc09g083370.3' => 'sly', 'Solyc12g038950.3' => 'sly', 'Sopen02g026630' => 'spe', 'Sopen06g018930' => 'spe', 'Sopen06g018940' => 'spe', 'Sopen08g009460' => 'spe', 'Sopen09g032290' => 'spe', 'Sp1g03080' => 'spa', 'Sp1g03090' => 'spa', 'Sp1g05480' => 'spa', 'Sp2g07860' => 'spa', 'Sp2g08430' => 'spa', 'Sp2g08440' => 'spa', 'Sp2g26200' => 'spa', 'Sp4g13170' => 'spa', 'Sp6g33840' => 'spa', 'SpUn1204_0010' => 'spa', 'TAR365G0908' => 'tar', 'TAR381G1270' => 'tar', 'TAR381G1651' => 'tar', 'TAR625G1131' => 'tar', 'TAR633G0962' => 'tar', 'TAR633G1729' => 'tar', 'TAR633G1864' => 'tar', 'TAR636G0221' => 'tar', 'TAR636G0314' => 'tar', 'TAR636G3202' => 'tar', 'THA.LOC104800805' => 'tha', 'THA.LOC104801096' => 'tha', 'THA.LOC104801555' => 'tha', 'THA.LOC104808491' => 'tha', 'THA.LOC104808595' => 'tha', 'THA.LOC104815985' => 'tha', 'THA.LOC104822250' => 'tha', 'THA.LOC104826071' => 'tha', 'Thecc.01G265200' => 'tca', 'Thecc.01G265300' => 'tca', 'Thecc.01G265700' => 'tca', 'Thecc.03G109100' => 'tca', 'Thecc.04G245900' => 'tca', 'Thecc.04G246000' => 'tca', 'Thhalv10003334m.g' => 'esa', 'Thhalv10005508m.g' => 'esa', 'Thhalv10005643m.g' => 'esa', 'Thhalv10007316m.g' => 'esa', 'Thhalv10009006m.g' => 'esa', 'Thhalv10009309m.g' => 'esa', 'Thhalv10014917m.g' => 'esa', 'Thhalv10014919m.g' => 'esa', 'Thhalv10015393m.g' => 'esa', 'Thhalv10016515m.g' => 'esa', 'Thhalv10029242m.g' => 'esa', 'TPR.G16654' => 'tpr', 'TPR.G20589' => 'tpr', 'TPR.G23029' => 'tpr', 'TPR.G27731' => 'tpr', 'TPR.G28889' => 'tpr', 'TPR.G28899' => 'tpr', 'TPR.G30846' => 'tpr', 'TPR.G5452' => 'tpr', 'TPR.G5713' => 'tpr', 'TPR.G9046' => 'tpr', 'TPR.G9061' => 'tpr', 'TWI09G1075' => 'twi', 'TWI12G0806' => 'twi', 'TWI18G0108' => 'twi', 'TWI53G1361' => 'twi', 'TWI73G0185' => 'twi', 'TWI73G0427' => 'twi', 'unitig_37.g12001' => 'ugi', 'unitig_747.g21660' => 'ugi', 'unitig_748.g7232' => 'ugi', 'unitig_748.g7315' => 'ugi', 'unitig_85.g27262' => 'ugi', 'unitig_92.g28220' => 'ugi', 'vmacro02632' => 'vma', 'vmacro08410' => 'vma', 'vmacro08411' => 'vma', 'vmacro15407' => 'vma', 'VMungo0251G3619' => 'vmu', 'VMungo0720G1204' => 'vmu', 'VMungo0720G1918' => 'vmu', 'VMungo0720G2387' => 'vmu', 'VMungo0720G2961' => 'vmu', 'VMungo1215G2154' => 'vmu', 'VMungo1383G2411' => 'vmu', 'Zm00001eb051130' => 'zma', 'Zm00001eb116830' => 'zma', 'Zm00001eb116850' => 'zma', 'Zm00001eb151740' => 'zma', 'Zm00001eb292360' => 'zma', 'Zm00001eb301640' => 'zma' ), 'gf_id' => 'HOM05D000856', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000856' ), 'data_identifier' => 'HOM05D000856', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000856', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p00010' => 'bna', 'A03p04160' => 'bna', 'A03p17160' => 'bna', 'A04p23370' => 'bna', 'A05p14860' => 'bna', 'A08p37020' => 'bna', 'A09p08050' => 'bna', 'A09p66800' => 'bna', 'A09p67940' => 'bna', 'A10p02680' => 'bna', 'A10p05320' => 'bna', 'Aa31LG1G20560' => 'aar', 'Aa31LG1G20610' => 'aar', 'Aa31LG1G7810' => 'aar', 'Aa31LG5G3590' => 'aar', 'Aa31LG5G6140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3819' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4683' => 'aag', 'Actinidia04480' => 'ach', 'Actinidia05466' => 'ach', 'Actinidia08445' => 'ach', 'Actinidia21170' => 'ach', 'Actinidia24812' => 'ach', 'Actinidia24951' => 'ach', 'Actinidia40088' => 'ach', 'Ah.02g111660' => 'amhyb', 'Ah.11g048900' => 'amhyb', 'Ah.11g049910' => 'amhyb', 'AL1G13870' => 'aly', 'AL1G13880' => 'aly', 'AL1G16760' => 'aly', 'AL390U10020' => 'aly', 'AL4G25520' => 'aly', 'AL6G19890' => 'aly', 'AL6G19900' => 'aly', 'AL6G19910' => 'aly', 'AL8G40100' => 'aly', 'Aqoxy2G03562' => 'aox', 'Aqoxy5G00316' => 'aox', 'Aqoxy5G00926' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1628KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1H403S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2FU6SJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.882I6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8YRY2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YN1SN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AF70II' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZA8L1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F916KL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHRD8H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KTZ8QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S22EMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8M29T' => 'arhy', 'AT1G04270' => 'ath', 'AT1G04280' => 'ath', 'AT1G06750' => 'ath', 'AT1G33850' => 'ath', 'AT2G30630' => 'ath', 'AT5G09490' => 'ath', 'AT5G09500' => 'ath', 'AT5G09510' => 'ath', 'AT5G43640' => 'ath', 'AT5G63070' => 'ath', 'ATR0605G315' => 'atr', 'Atru.chr11.175' => 'acertr', 'Atru.chr11.653' => 'acertr', 'Atru.chr3.1616' => 'acertr', 'Atru.chr4.2230' => 'acertr', 'Atru.chr4.2232' => 'acertr', 'Atru.chr5.1598' => 'acertr', 'Atru.chr5.1600' => 'acertr', 'Atru.chr5.2188' => 'acertr', 'AUR62008326' => 'cqu', 'AUR62011922' => 'cqu', 'AUR62011924' => 'cqu', 'AUR62021771' => 'cqu', 'AUR62032237' => 'cqu', 'AUR62032240' => 'cqu', 'BcaB01g05572' => 'bca', 'BcaB02g10337' => 'bca', 'BcaB04g19944' => 'bca', 'BcaB05g21548' => 'bca', 'BcaB05g21549' => 'bca', 'BcaB05g23227' => 'bca', 'BcaB06g26256' => 'bca', 'BcaB06g26257' => 'bca', 'BcaB06g28379' => 'bca', 'BcaC02g11159' => 'bca', 'BcaC03g13258' => 'bca', 'BcaC03g13259' => 'bca', 'BcaC05g24456' => 'bca', 'BcaC05g24457' => 'bca', 'BcaC07g36922' => 'bca', 'BcaC07g36923' => 'bca', 'BcaC07g42050' => 'bca', 'BcaC07g42176' => 'bca', 'BcaC07g42195' => 'bca', 'BcaC07g42196' => 'bca', 'BcaNung06674' => 'bca', 'BolC2t06351H' => 'bol', 'BolC2t06352H' => 'bol', 'BolC3t12993H' => 'bol', 'BolC4t23525H' => 'bol', 'BolC4t27475H' => 'bol', 'BolC5t29025H' => 'bol', 'BolC5t29026H' => 'bol', 'BolC8t46898H' => 'bol', 'BolC8t46899H' => 'bol', 'BolC8t52630H' => 'bol', 'BolC8t52765H' => 'bol', 'BolC9t53824H' => 'bol', 'BraA03t09760Z' => 'bra', 'BraA03t10990Z' => 'bra', 'BraA05t20413Z' => 'bra', 'BraA08t35602Z' => 'bra', 'BraA09t36458Z' => 'bra', 'BraA09t42018Z' => 'bra', 'BraA09t42129Z' => 'bra', 'BraA10t42536Z' => 'bra', 'BraA10t42537Z' => 'bra', 'C01p10690' => 'bna', 'C02p03890' => 'bna', 'C02p03900' => 'bna', 'C03p04620' => 'bna', 'C04p19870' => 'bna', 'C04p59670' => 'bna', 'C05p02460' => 'bna', 'C05p02470' => 'bna', 'C08p00980' => 'bna', 'C08p00990' => 'bna', 'C08p51030' => 'bna', 'C08p52360' => 'bna', 'C09p09120' => 'bna', 'CAN.G19.15' => 'can', 'CAN.G251.10' => 'can', 'CAN.G251.9' => 'can', 'CAN.G398.24' => 'can', 'CAN.G410.32' => 'can', 'CAN.G881.2' => 'can', 'CANSAT01G3025' => 'cansat', 'CANSAT78G1211' => 'cansat', 'CANSAT78G1218' => 'cansat', 'CANSAT78G1521' => 'cansat', 'CANSAT78G1670' => 'cansat', 'CARHR003600' => 'chi', 'CARHR003610' => 'chi', 'CARHR006290' => 'chi', 'CARHR006430' => 'chi', 'CARHR124110' => 'chi', 'CARHR203870' => 'chi', 'CARHR203880' => 'chi', 'CARHR203890' => 'chi', 'CARHR276880' => 'chi', 'Carub.0001s0346' => 'cru', 'Carub.0001s0347' => 'cru', 'Carub.0001s0607' => 'cru', 'Carub.0003s2768' => 'cru', 'Carub.0003s2769' => 'cru', 'Carub.0004s1178' => 'cru', 'Carub.0006s0806' => 'cru', 'Carub.0006s0807' => 'cru', 'Carub.0006s0808' => 'cru', 'Carub.0008s0501' => 'cru', 'Carub.0008s2379' => 'cru', 'Ca_08655_v3' => 'car', 'Ca_08922_v3' => 'car', 'Ca_08923_v3' => 'car', 'Ca_09119_v3' => 'car', 'Ca_09703_v3' => 'car', 'Ca_09705_v3' => 'car', 'Ca_09835_v3' => 'car', 'Ca_26403_v3' => 'car', 'Ca_30719_v3' => 'car', 'CBR_g17958' => 'cbr', 'CBR_g40516' => 'cbr', 'Cc00_g05350' => 'ccan', 'Cc01_g18690' => 'ccan', 'Cc03_g04830' => 'ccan', 'Cc03_g04850' => 'ccan', 'CDE02G4469' => 'cde', 'CDE06G0883' => 'cde', 'CDE06G1295' => 'cde', 'CDE06G1390' => 'cde', 'CDE07G0584' => 'cde', 'CDE07G1084' => 'cde', 'CDE08G1259' => 'cde', 'Cfa002341' => 'cfa', 'Cfa024337' => 'cfa', 'Ciclev10004749m.g' => 'ccl', 'Ciclev10006127m.g' => 'ccl', 'Ciclev10019720m.g' => 'ccl', 'Ciclev10022652m.g' => 'ccl', 'CiPaw.01G190400' => 'cil', 'CiPaw.01G190500' => 'cil', 'CiPaw.02G116400' => 'cil', 'CiPaw.02G116500' => 'cil', 'CiPaw.04G183000' => 'cil', 'CiPaw.04G183300' => 'cil', 'ClCG05G004610' => 'cla', 'ClCG05G004620' => 'cla', 'ClCG06G006730' => 'cla', 'ClCG06G006740' => 'cla', 'ClCG11G003690' => 'cla', 'COL.COLO4_08276' => 'col', 'COL.COLO4_08277' => 'col', 'COL.COLO4_15787' => 'col', 'COL.COLO4_15789' => 'col', 'Cpa.g.c44815' => 'cpa', 'Cpa.g.sc52.144' => 'cpa', 'Cpa.g.sc58.46' => 'cpa', 'Cpa.g.sc58.47' => 'cpa', 'Cre08.g360900' => 'cre', 'CsaV3_2G013030' => 'csa', 'CsaV3_2G013050' => 'csa', 'CsaV3_2G015620' => 'csa', 'CsaV3_3G012590' => 'csa', 'CsaV3_3G012600' => 'csa', 'CSS0001641' => 'camsi', 'CSS0008310' => 'camsi', 'CSS0013011' => 'camsi', 'CSS0017147' => 'camsi', 'CSS0022970' => 'camsi', 'CSS0025655' => 'camsi', 'CSS0028665' => 'camsi', 'CSS0029117' => 'camsi', 'CSS0032024' => 'camsi', 'CSS0039681' => 'camsi', 'CSS0046516' => 'camsi', 'CSS0050307' => 'camsi', 'DCAR_005871' => 'dca', 'DCAR_007342' => 'dca', 'DCAR_024228' => 'dca', 'DCAR_027277' => 'dca', 'DCAR_030718' => 'dca', 'Dinv20287' => 'din', 'Dinv22461' => 'din', 'Dinv22464' => 'din', 'Dinv29912' => 'din', 'Dinv29913' => 'din', 'Dinv34580' => 'din', 'Dinv34582' => 'din', 'Dinv44632' => 'din', 'Duzib052G0266' => 'dzi', 'Duzib133G0907' => 'dzi', 'Duzib133G1034' => 'dzi', 'Duzib138G0207' => 'dzi', 'Duzib138G0491' => 'dzi', 'Duzib151G0812' => 'dzi', 'Duzib151G1166' => 'dzi', 'Duzib168G0192' => 'dzi', 'Duzib211G0077' => 'dzi', 'Duzib212G0429' => 'dzi', 'Duzib212G0472' => 'dzi', 'ECA233G2617' => 'eca', 'ECA236G4188' => 'eca', 'ECA240G0936' => 'eca', 'ECA240G1129' => 'eca', 'ECA247G0623' => 'eca', 'EL10Ac5g10451' => 'bvu', 'EL10Ac5g10453' => 'bvu', 'EL10Ac5g10894' => 'bvu', 'Eucgr.H00192' => 'egr', 'Eucgr.H00193' => 'egr', 'Eucgr.H00194' => 'egr', 'Eucgr.J01562' => 'egr', 'Eucgr.K03301' => 'egr', 'FAN02G0632' => 'fan', 'FAN05G5378' => 'fan', 'FAN09G3247' => 'fan', 'FAN12G0435' => 'fan', 'FAN12G2426' => 'fan', 'FAN14G1707' => 'fan', 'FAN14G4725' => 'fan', 'FAN15G2071' => 'fan', 'FAN17G3065' => 'fan', 'FAN19G1376' => 'fan', 'FAN20G0354' => 'fan', 'FAN20G2429' => 'fan', 'FAN20G2658' => 'fan', 'FAN24G2343' => 'fan', 'FAN27G2362' => 'fan', 'FAN28G1765' => 'fan', 'FvH4_1g16020' => 'fve', 'FvH4_2g04890' => 'fve', 'FvH4_2g22270' => 'fve', 'FvH4_4g02630' => 'fve', 'FvH4_4g02640' => 'fve', 'FvH4_6g02650' => 'fve', 'Glyma.02G140600' => 'gma', 'Glyma.03G159900' => 'gma', 'Glyma.05G234800' => 'gma', 'Glyma.07G269600' => 'gma', 'Glyma.08G042300' => 'gma', 'Glyma.10G033500' => 'gma', 'Glyma.10G185200' => 'gma', 'Glyma.17G004300' => 'gma', 'Glyma.19G161900' => 'gma', 'Glyma.20G205100' => 'gma', 'Glyma.20G205200' => 'gma', 'Gohir.A01G139101' => 'ghi', 'Gohir.A02G035600' => 'ghi', 'Gohir.A02G117901' => 'ghi', 'Gohir.A07G210100' => 'ghi', 'Gohir.A07G210200' => 'ghi', 'Gohir.A08G061100' => 'ghi', 'Gohir.A09G223000' => 'ghi', 'Gohir.A09G223100' => 'ghi', 'Gohir.A10G113900' => 'ghi', 'Gohir.A10G114000' => 'ghi', 'Gohir.D02G042300' => 'ghi', 'Gohir.D07G216100' => 'ghi', 'Gohir.D07G216200' => 'ghi', 'Gohir.D08G070400' => 'ghi', 'Gohir.D09G225000' => 'ghi', 'Gohir.D09G225100' => 'ghi', 'Gohir.D10G152300' => 'ghi', 'Gohir.D10G153200' => 'ghi', 'Gohir.D11G133701' => 'ghi', 'Gorai.004G074100' => 'gra', 'Gorai.005G046800' => 'gra', 'Gorai.006G246500' => 'gra', 'Gorai.006G246600' => 'gra', 'Gorai.007G142900' => 'gra', 'Gorai.011G171000' => 'gra', 'Gorai.011G171100' => 'gra', 'Gorai.013G104300' => 'gra', 'Gorai.013G104400' => 'gra', 'GSVIVG01000754001' => 'vvi', 'GSVIVG01000756001' => 'vvi', 'GSVIVG01010903001' => 'vvi', 'GSVIVG01017623001' => 'vvi', 'GSVIVG01018113001' => 'vvi', 'GSVIVG01018116001' => 'vvi', 'GSVIVG01018118001' => 'vvi', 'HanXRQChr03g0076211' => 'han', 'HanXRQChr03g0092431' => 'han', 'HanXRQChr03g0092441' => 'han', 'HanXRQChr03g0092591' => 'han', 'HanXRQChr03g0092671' => 'han', 'HanXRQChr03g0092681' => 'han', 'HanXRQChr03g0092691' => 'han', 'HanXRQChr03g0092701' => 'han', 'HanXRQChr03g0092721' => 'han', 'HanXRQChr03g0092731' => 'han', 'HanXRQChr04g0113681' => 'han', 'HanXRQChr10g0281371' => 'han', 'HanXRQChr11g0337141' => 'han', 'HanXRQChr13g0424521' => 'han', 'HanXRQChr13g0424531' => 'han', 'HanXRQChr13g0424541' => 'han', 'HanXRQChr16g0498221' => 'han', 'Haze_04377' => 'cav', 'Haze_11298' => 'cav', 'Haze_24547' => 'cav', 'Haze_24550' => 'cav', 'Haze_26587' => 'cav', 'Hma1.2p1_0650F.1_g195410' => 'hma', 'Hma1.2p1_0893F.1_g233470' => 'hma', 'HPP92_006508' => 'vpl', 'HPP92_024780' => 'vpl', 'Hund02688' => 'sun', 'Hund09380' => 'sun', 'Hund09381' => 'sun', 'Hund09832' => 'sun', 'Hund09833' => 'sun', 'Hund11351' => 'sun', 'Hund11513' => 'sun', 'Lalb_Chr06g0162591' => 'lal', 'Lalb_Chr06g0162601' => 'lal', 'Lalb_Chr06g0169321' => 'lal', 'Lalb_Chr09g0330951' => 'lal', 'Lalb_Chr16g0387631' => 'lal', 'Lalb_Chr21g0306241' => 'lal', 'Lalb_Chr25g0290051' => 'lal', 'Lalb_Chr25g0290061' => 'lal', 'Lalb_Chr25g0290071' => 'lal', 'Lj1g0003876' => 'lja', 'Lj1P1207T36' => 'lonja', 'Lj2C1156G12' => 'lonja', 'Lj3A793G39' => 'lonja', 'Lj3C580G2' => 'lonja', 'Lj3C780G2' => 'lonja', 'Lj3C780T4' => 'lonja', 'Lj3C793G9' => 'lonja', 'Lj4g0012960' => 'lja', 'Lj5g0021252' => 'lja', 'Lj5g0021484' => 'lja', 'Lj5g0024528' => 'lja', 'Lj6A399T12' => 'lonja', 'Lj6A656G65' => 'lonja', 'Lsat_1_v5_gn_3_125500' => 'lsa', 'Lsat_1_v5_gn_3_125540' => 'lsa', 'Lsat_1_v5_gn_5_72701' => 'lsa', 'Lsat_1_v5_gn_8_91560' => 'lsa', 'Lsat_1_v5_gn_9_9640' => 'lsa', 'Manes.01G200600' => 'mes', 'Manes.01G200700' => 'mes', 'Manes.03G168900' => 'mes', 'Manes.03G169000' => 'mes', 'Manes.05G085801' => 'mes', 'Manes.05G086200' => 'mes', 'Manes.15G036700' => 'mes', 'Manes.15G036900' => 'mes', 'Mapoly0004s0172' => 'mpo', 'Mapoly0023s0001' => 'mpo', 'Mapoly0142s0012' => 'mpo', 'MBI01_g32854_MAGBIO' => 'mbi', 'MBI11_g24427_MAGBIO' => 'mbi', 'MBI11_g47319_MAGBIO' => 'mbi', 'MCO01G433' => 'mco', 'MD00G1187800' => 'mdo', 'MD04G1226500' => 'mdo', 'MD05G1203900' => 'mdo', 'MD10G1191100' => 'mdo', 'MD12G1243500' => 'mdo', 'MD13G1207000' => 'mdo', 'MD13G1207100' => 'mdo', 'MD16G1208600' => 'mdo', 'Medtr1g050352' => 'mtr', 'Medtr1g070385' => 'mtr', 'Medtr1g070450' => 'mtr', 'Medtr1g075200' => 'mtr', 'Medtr1g075250' => 'mtr', 'Medtr1g075260' => 'mtr', 'Medtr1g475250' => 'mtr', 'Medtr4g075450' => 'mtr', 'Medtr7g096300' => 'mtr', 'Medtr8g105110' => 'mtr', 'MELO3C006470.2' => 'cme', 'MELO3C006471.2' => 'cme', 'MELO3C020772.2' => 'cme', 'MELO3C026780.2' => 'cme', 'MELO3C026781.2' => 'cme', 'Migut.D00390' => 'egut', 'Migut.G00435' => 'egut', 'Migut.G00436' => 'egut', 'Migut.G00718' => 'egut', 'MSTRG.21891' => 'ama', 'MSTRG.26910' => 'ama', 'MSTRG.4099' => 'ama', 'MSTRG.9925' => 'ama', 'Nitab4.5_0000165g0010' => 'nta', 'Nitab4.5_0000209g0180' => 'nta', 'Nitab4.5_0000244g0440' => 'nta', 'Nitab4.5_0000525g0220' => 'nta', 'Nitab4.5_0001597g0020' => 'nta', 'Nitab4.5_0001878g0040' => 'nta', 'Nitab4.5_0001878g0060' => 'nta', 'Nitab4.5_0002838g0100' => 'nta', 'Nitab4.5_0002838g0120' => 'nta', 'Nitab4.5_0004798g0030' => 'nta', 'Nitab4.5_0005420g0010' => 'nta', 'Nitab4.5_0005507g0010' => 'nta', 'Nitab4.5_0005574g0020' => 'nta', 'Nitab4.5_0005838g0010' => 'nta', 'Nitab4.5_0010580g0020' => 'nta', 'Nn1g02599' => 'nnu', 'Nn1g02608' => 'nnu', 'Nn3g17742' => 'nnu', 'Nn3g19534' => 'nnu', 'Nn3g19535' => 'nnu', 'Oeu008790.1' => 'oeu', 'Oeu008792.1' => 'oeu', 'Oeu032590.1' => 'oeu', 'Oeu035349.1' => 'oeu', 'Oeu049791.1' => 'oeu', 'Os01g0774500' => 'osa', 'Os03g0628800' => 'osa', 'Os03g0798600' => 'osa', 'Os05g0508800' => 'osa', 'Peaxi162Scf00036g02018' => 'pax', 'Peaxi162Scf00578g00032' => 'pax', 'Peaxi162Scf00578g00317' => 'pax', 'Peaxi162Scf00785g00114' => 'pax', 'Peaxi162Scf00813g00119' => 'pax', 'Peaxi162Scf00906g00227' => 'pax', 'PGR004G0875' => 'pgr', 'PGR004G2424' => 'pgr', 'PGR031G1239' => 'pgr', 'PGR031G2474' => 'pgr', 'PGR044G0423' => 'pgr', 'PGSC0003DMG400001128' => 'stu', 'PGSC0003DMG400007336' => 'stu', 'PGSC0003DMG400016318' => 'stu', 'PGSC0003DMG400016319' => 'stu', 'PGSC0003DMG400018074' => 'stu', 'Phvul.001G157700' => 'pvu', 'Phvul.002G148550' => 'pvu', 'Phvul.002G320200' => 'pvu', 'Phvul.003G089200' => 'pvu', 'Phvul.007G126000' => 'pvu', 'Phvul.007G126100' => 'pvu', 'Phvul.007G178000' => 'pvu', 'Phvul.007G178200' => 'pvu', 'Potri.002G043000' => 'ptr', 'Potri.002G043200' => 'ptr', 'Potri.003G123750' => 'ptr', 'Potri.005G055401' => 'ptr', 'Potri.005G219700' => 'ptr', 'Potri.005G220000' => 'ptr', 'Potri.008G161901' => 'ptr', 'Potri.008G162000' => 'ptr', 'Potri.008G162400' => 'ptr', 'Potri.010G076900' => 'ptr', 'Pp3c12_9180' => 'ppa', 'Pp3c13_19770' => 'ppa', 'Pp3c14_22950' => 'ppa', 'Pp3c16_12160' => 'ppa', 'Pp3c27_7820' => 'ppa', 'Pp3c2_3490' => 'ppa', 'Pp3c3_23700' => 'ppa', 'Pp3c3_36520' => 'ppa', 'Pp3c4_15250' => 'ppa', 'PRCOL_00007002' => 'pco', 'Prupe.1G030600' => 'ppe', 'Prupe.1G030700' => 'ppe', 'Prupe.6G345200' => 'ppe', 'Prupe.8G230300' => 'ppe', 'Prupe.8G230500' => 'ppe', 'Psat3g059600' => 'psa', 'Psat5g200920' => 'psa', 'Psat6g056440' => 'psa', 'Psat6g057360' => 'psa', 'Psat6g134120' => 'psa', 'Psat6g134160' => 'psa', 'Psat7g008640' => 'psa', 'Psat7g185240' => 'psa', 'PSO017G1330' => 'pso', 'PSO063G6097' => 'pso', 'PSO170G0835' => 'pso', 'PSO170G2499' => 'pso', 'PSO210G5058' => 'pso', 'PSO210G6154' => 'pso', 'PSO585G0031' => 'pso', 'PSO832G0264' => 'pso', 'PSO832G4288' => 'pso', 'QL03p027355' => 'qlo', 'QL03p027430' => 'qlo', 'QL04p081380' => 'qlo', 'QL06p015642' => 'qlo', 'QL06p015650' => 'qlo', 'QL06p015686' => 'qlo', 'QL12p042927' => 'qlo', 'QL93p1863_0035' => 'qlo', 'RcHm_v2.0_Chr3g0450581' => 'rch', 'RcHm_v2.0_Chr4g0390371' => 'rch', 'RcHm_v2.0_Chr4g0390381' => 'rch', 'RcHm_v2.0_Chr4g0390491' => 'rch', 'RcHm_v2.0_Chr4g0390501' => 'rch', 'RcHm_v2.0_Chr6g0289231' => 'rch', 'Rhsim04G0190400' => 'rsi', 'Rhsim04G0190500' => 'rsi', 'Rhsim04G0190600' => 'rsi', 'Rhsim13G0031400' => 'rsi', 'Rhsim13G0165600' => 'rsi', 'RhsimUnG0114600' => 'rsi', 'RhsimUnG0114700' => 'rsi', 'Sabra02G0034800' => 'sbr', 'Sabra02G0035100' => 'sbr', 'Sabra05G0168600' => 'sbr', 'Sabra05G0168800' => 'sbr', 'Sabra08G0123700' => 'sbr', 'Sabra10G0031900' => 'sbr', 'Sabra13G0039000' => 'sbr', 'SalBow2G0782' => 'sbo', 'SalBow2G1403' => 'sbo', 'SalBow4G0074' => 'sbo', 'SalBow4G2635' => 'sbo', 'SalBow5G3010' => 'sbo', 'Sc05g0000870' => 'sci', 'Sc05g0000890' => 'sci', 'Sc13g0005000' => 'sci', 'Sc13g0005030' => 'sci', 'Sc19g0003790' => 'sci', 'Sc19g0003800' => 'sci', 'Sed0003467' => 'sed', 'Sed0009355' => 'sed', 'Sed0009894' => 'sed', 'Sed0011972' => 'sed', 'Sed0021483' => 'sed', 'Sed0021750' => 'sed', 'Sed0026279' => 'sed', 'SEGI_05312' => 'sgi', 'SEGI_10112' => 'sgi', 'SEGI_15835' => 'sgi', 'SEGI_30386' => 'sgi', 'SEGI_34122' => 'sgi', 'SEGI_35063' => 'sgi', 'SGA_v2.0_scaffold101G29794' => 'sas', 'SGA_v2.0_scaffold1G00573' => 'sas', 'SGA_v2.0_scaffold79G25637' => 'sas', 'SGA_v2.0_scaffold88G27283' => 'sas', 'SGA_v2.0_scaffold88G27285' => 'sas', 'SGA_v2.0_scaffold88G27331' => 'sas', 'SHI09937' => 'shi', 'SMO119G0302' => 'smo', 'SMO137G0231' => 'smo', 'SMO367G1151' => 'smo', 'Solyc02g082000.3' => 'sly', 'Solyc06g031670.3' => 'sly', 'Solyc06g053810.3' => 'sly', 'Solyc07g025457.1' => 'sly', 'Solyc08g059740.1' => 'sly', 'Solyc08g059750.3' => 'sly', 'Solyc09g083370.3' => 'sly', 'Solyc12g038950.3' => 'sly', 'Sopen02g026630' => 'spe', 'Sopen06g018930' => 'spe', 'Sopen06g018940' => 'spe', 'Sopen08g009460' => 'spe', 'Sopen09g032290' => 'spe', 'Sp1g03080' => 'spa', 'Sp1g03090' => 'spa', 'Sp1g05480' => 'spa', 'Sp2g07860' => 'spa', 'Sp2g08430' => 'spa', 'Sp2g08440' => 'spa', 'Sp2g26200' => 'spa', 'Sp4g13170' => 'spa', 'Sp6g33840' => 'spa', 'SpUn1204_0010' => 'spa', 'TAR365G0908' => 'tar', 'TAR381G1270' => 'tar', 'TAR381G1651' => 'tar', 'TAR625G1131' => 'tar', 'TAR633G0962' => 'tar', 'TAR633G1729' => 'tar', 'TAR633G1864' => 'tar', 'TAR636G0221' => 'tar', 'TAR636G0314' => 'tar', 'TAR636G3202' => 'tar', 'THA.LOC104800805' => 'tha', 'THA.LOC104801096' => 'tha', 'THA.LOC104801555' => 'tha', 'THA.LOC104808491' => 'tha', 'THA.LOC104808595' => 'tha', 'THA.LOC104815985' => 'tha', 'THA.LOC104822250' => 'tha', 'THA.LOC104826071' => 'tha', 'Thecc.01G265200' => 'tca', 'Thecc.01G265300' => 'tca', 'Thecc.01G265700' => 'tca', 'Thecc.03G109100' => 'tca', 'Thecc.04G245900' => 'tca', 'Thecc.04G246000' => 'tca', 'Thhalv10003334m.g' => 'esa', 'Thhalv10005508m.g' => 'esa', 'Thhalv10005643m.g' => 'esa', 'Thhalv10007316m.g' => 'esa', 'Thhalv10009006m.g' => 'esa', 'Thhalv10009309m.g' => 'esa', 'Thhalv10014917m.g' => 'esa', 'Thhalv10014919m.g' => 'esa', 'Thhalv10015393m.g' => 'esa', 'Thhalv10016515m.g' => 'esa', 'Thhalv10029242m.g' => 'esa', 'TPR.G16654' => 'tpr', 'TPR.G20589' => 'tpr', 'TPR.G23029' => 'tpr', 'TPR.G27731' => 'tpr', 'TPR.G28889' => 'tpr', 'TPR.G28899' => 'tpr', 'TPR.G30846' => 'tpr', 'TPR.G5452' => 'tpr', 'TPR.G5713' => 'tpr', 'TPR.G9046' => 'tpr', 'TPR.G9061' => 'tpr', 'TWI09G1075' => 'twi', 'TWI12G0806' => 'twi', 'TWI18G0108' => 'twi', 'TWI53G1361' => 'twi', 'TWI73G0185' => 'twi', 'TWI73G0427' => 'twi', 'unitig_37.g12001' => 'ugi', 'unitig_747.g21660' => 'ugi', 'unitig_748.g7232' => 'ugi', 'unitig_748.g7315' => 'ugi', 'unitig_85.g27262' => 'ugi', 'unitig_92.g28220' => 'ugi', 'vmacro02632' => 'vma', 'vmacro08410' => 'vma', 'vmacro08411' => 'vma', 'vmacro15407' => 'vma', 'VMungo0251G3619' => 'vmu', 'VMungo0720G1204' => 'vmu', 'VMungo0720G1918' => 'vmu', 'VMungo0720G2387' => 'vmu', 'VMungo0720G2961' => 'vmu', 'VMungo1215G2154' => 'vmu', 'VMungo1383G2411' => 'vmu', 'Zm00001eb051130' => 'zma', 'Zm00001eb116830' => 'zma', 'Zm00001eb116850' => 'zma', 'Zm00001eb151740' => 'zma', 'Zm00001eb292360' => 'zma', 'Zm00001eb301640' => 'zma' ) $gf_id = 'HOM05D000856' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000856' ) $data_identifier = 'HOM05D000856' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 13, 'ath' => (int) 10, 'atr' => (int) 1, 'acertr' => (int) 8, 'cqu' => (int) 6, 'bca' => (int) 21, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 11, 'car' => (int) 9, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 8, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 5, 'fan' => (int) 16, 'fve' => (int) 6, 'gma' => (int) 11, 'ghi' => (int) 19, 'gra' => (int) 9, 'vvi' => (int) 7, 'han' => (int) 17, 'cav' => (int) 5, 'hma' => (int) 2, 'vpl' => (int) 2, 'sun' => (int) 7, 'lal' => (int) 9, 'lja' => (int) 5, 'lonja' => (int) 9, 'lsa' => (int) 5, 'mes' => (int) 8, 'mpo' => (int) 3, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 10, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 15, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 9, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 9, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 6, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 5, 'spa' => (int) 10, 'tar' => (int) 10, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 11, 'tpr' => (int) 11, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 4, 'vmu' => (int) 7, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb301640' $species_info = array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ) $local_species = 'tar' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000856', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p00010' => 'bna', 'A03p04160' => 'bna', 'A03p17160' => 'bna', 'A04p23370' => 'bna', 'A05p14860' => 'bna', 'A08p37020' => 'bna', 'A09p08050' => 'bna', 'A09p66800' => 'bna', 'A09p67940' => 'bna', 'A10p02680' => 'bna', 'A10p05320' => 'bna', 'Aa31LG1G20560' => 'aar', 'Aa31LG1G20610' => 'aar', 'Aa31LG1G7810' => 'aar', 'Aa31LG5G3590' => 'aar', 'Aa31LG5G6140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3819' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4683' => 'aag', 'Actinidia04480' => 'ach', 'Actinidia05466' => 'ach', 'Actinidia08445' => 'ach', 'Actinidia21170' => 'ach', 'Actinidia24812' => 'ach', 'Actinidia24951' => 'ach', 'Actinidia40088' => 'ach', 'Ah.02g111660' => 'amhyb', 'Ah.11g048900' => 'amhyb', 'Ah.11g049910' => 'amhyb', 'AL1G13870' => 'aly', 'AL1G13880' => 'aly', 'AL1G16760' => 'aly', 'AL390U10020' => 'aly', 'AL4G25520' => 'aly', 'AL6G19890' => 'aly', 'AL6G19900' => 'aly', 'AL6G19910' => 'aly', 'AL8G40100' => 'aly', 'Aqoxy2G03562' => 'aox', 'Aqoxy5G00316' => 'aox', 'Aqoxy5G00926' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1628KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1H403S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2FU6SJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.882I6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8YRY2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YN1SN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AF70II' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZA8L1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F916KL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHRD8H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KTZ8QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S22EMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8M29T' => 'arhy', 'AT1G04270' => 'ath', 'AT1G04280' => 'ath', 'AT1G06750' => 'ath', 'AT1G33850' => 'ath', 'AT2G30630' => 'ath', 'AT5G09490' => 'ath', 'AT5G09500' => 'ath', 'AT5G09510' => 'ath', 'AT5G43640' => 'ath', 'AT5G63070' => 'ath', 'ATR0605G315' => 'atr', 'Atru.chr11.175' => 'acertr', 'Atru.chr11.653' => 'acertr', 'Atru.chr3.1616' => 'acertr', 'Atru.chr4.2230' => 'acertr', 'Atru.chr4.2232' => 'acertr', 'Atru.chr5.1598' => 'acertr', 'Atru.chr5.1600' => 'acertr', 'Atru.chr5.2188' => 'acertr', 'AUR62008326' => 'cqu', 'AUR62011922' => 'cqu', 'AUR62011924' => 'cqu', 'AUR62021771' => 'cqu', 'AUR62032237' => 'cqu', 'AUR62032240' => 'cqu', 'BcaB01g05572' => 'bca', 'BcaB02g10337' => 'bca', 'BcaB04g19944' => 'bca', 'BcaB05g21548' => 'bca', 'BcaB05g21549' => 'bca', 'BcaB05g23227' => 'bca', 'BcaB06g26256' => 'bca', 'BcaB06g26257' => 'bca', 'BcaB06g28379' => 'bca', 'BcaC02g11159' => 'bca', 'BcaC03g13258' => 'bca', 'BcaC03g13259' => 'bca', 'BcaC05g24456' => 'bca', 'BcaC05g24457' => 'bca', 'BcaC07g36922' => 'bca', 'BcaC07g36923' => 'bca', 'BcaC07g42050' => 'bca', 'BcaC07g42176' => 'bca', 'BcaC07g42195' => 'bca', 'BcaC07g42196' => 'bca', 'BcaNung06674' => 'bca', 'BolC2t06351H' => 'bol', 'BolC2t06352H' => 'bol', 'BolC3t12993H' => 'bol', 'BolC4t23525H' => 'bol', 'BolC4t27475H' => 'bol', 'BolC5t29025H' => 'bol', 'BolC5t29026H' => 'bol', 'BolC8t46898H' => 'bol', 'BolC8t46899H' => 'bol', 'BolC8t52630H' => 'bol', 'BolC8t52765H' => 'bol', 'BolC9t53824H' => 'bol', 'BraA03t09760Z' => 'bra', 'BraA03t10990Z' => 'bra', 'BraA05t20413Z' => 'bra', 'BraA08t35602Z' => 'bra', 'BraA09t36458Z' => 'bra', 'BraA09t42018Z' => 'bra', 'BraA09t42129Z' => 'bra', 'BraA10t42536Z' => 'bra', 'BraA10t42537Z' => 'bra', 'C01p10690' => 'bna', 'C02p03890' => 'bna', 'C02p03900' => 'bna', 'C03p04620' => 'bna', 'C04p19870' => 'bna', 'C04p59670' => 'bna', 'C05p02460' => 'bna', 'C05p02470' => 'bna', 'C08p00980' => 'bna', 'C08p00990' => 'bna', 'C08p51030' => 'bna', 'C08p52360' => 'bna', 'C09p09120' => 'bna', 'CAN.G19.15' => 'can', 'CAN.G251.10' => 'can', 'CAN.G251.9' => 'can', 'CAN.G398.24' => 'can', 'CAN.G410.32' => 'can', 'CAN.G881.2' => 'can', 'CANSAT01G3025' => 'cansat', 'CANSAT78G1211' => 'cansat', 'CANSAT78G1218' => 'cansat', 'CANSAT78G1521' => 'cansat', 'CANSAT78G1670' => 'cansat', 'CARHR003600' => 'chi', 'CARHR003610' => 'chi', 'CARHR006290' => 'chi', 'CARHR006430' => 'chi', 'CARHR124110' => 'chi', 'CARHR203870' => 'chi', 'CARHR203880' => 'chi', 'CARHR203890' => 'chi', 'CARHR276880' => 'chi', 'Carub.0001s0346' => 'cru', 'Carub.0001s0347' => 'cru', 'Carub.0001s0607' => 'cru', 'Carub.0003s2768' => 'cru', 'Carub.0003s2769' => 'cru', 'Carub.0004s1178' => 'cru', 'Carub.0006s0806' => 'cru', 'Carub.0006s0807' => 'cru', 'Carub.0006s0808' => 'cru', 'Carub.0008s0501' => 'cru', 'Carub.0008s2379' => 'cru', 'Ca_08655_v3' => 'car', 'Ca_08922_v3' => 'car', 'Ca_08923_v3' => 'car', 'Ca_09119_v3' => 'car', 'Ca_09703_v3' => 'car', 'Ca_09705_v3' => 'car', 'Ca_09835_v3' => 'car', 'Ca_26403_v3' => 'car', 'Ca_30719_v3' => 'car', 'CBR_g17958' => 'cbr', 'CBR_g40516' => 'cbr', 'Cc00_g05350' => 'ccan', 'Cc01_g18690' => 'ccan', 'Cc03_g04830' => 'ccan', 'Cc03_g04850' => 'ccan', 'CDE02G4469' => 'cde', 'CDE06G0883' => 'cde', 'CDE06G1295' => 'cde', 'CDE06G1390' => 'cde', 'CDE07G0584' => 'cde', 'CDE07G1084' => 'cde', 'CDE08G1259' => 'cde', 'Cfa002341' => 'cfa', 'Cfa024337' => 'cfa', 'Ciclev10004749m.g' => 'ccl', 'Ciclev10006127m.g' => 'ccl', 'Ciclev10019720m.g' => 'ccl', 'Ciclev10022652m.g' => 'ccl', 'CiPaw.01G190400' => 'cil', 'CiPaw.01G190500' => 'cil', 'CiPaw.02G116400' => 'cil', 'CiPaw.02G116500' => 'cil', 'CiPaw.04G183000' => 'cil', 'CiPaw.04G183300' => 'cil', 'ClCG05G004610' => 'cla', 'ClCG05G004620' => 'cla', 'ClCG06G006730' => 'cla', 'ClCG06G006740' => 'cla', 'ClCG11G003690' => 'cla', 'COL.COLO4_08276' => 'col', 'COL.COLO4_08277' => 'col', 'COL.COLO4_15787' => 'col', 'COL.COLO4_15789' => 'col', 'Cpa.g.c44815' => 'cpa', 'Cpa.g.sc52.144' => 'cpa', 'Cpa.g.sc58.46' => 'cpa', 'Cpa.g.sc58.47' => 'cpa', 'Cre08.g360900' => 'cre', 'CsaV3_2G013030' => 'csa', 'CsaV3_2G013050' => 'csa', 'CsaV3_2G015620' => 'csa', 'CsaV3_3G012590' => 'csa', 'CsaV3_3G012600' => 'csa', 'CSS0001641' => 'camsi', 'CSS0008310' => 'camsi', 'CSS0013011' => 'camsi', 'CSS0017147' => 'camsi', 'CSS0022970' => 'camsi', 'CSS0025655' => 'camsi', 'CSS0028665' => 'camsi', 'CSS0029117' => 'camsi', 'CSS0032024' => 'camsi', 'CSS0039681' => 'camsi', 'CSS0046516' => 'camsi', 'CSS0050307' => 'camsi', 'DCAR_005871' => 'dca', 'DCAR_007342' => 'dca', 'DCAR_024228' => 'dca', 'DCAR_027277' => 'dca', 'DCAR_030718' => 'dca', 'Dinv20287' => 'din', 'Dinv22461' => 'din', 'Dinv22464' => 'din', 'Dinv29912' => 'din', 'Dinv29913' => 'din', 'Dinv34580' => 'din', 'Dinv34582' => 'din', 'Dinv44632' => 'din', 'Duzib052G0266' => 'dzi', 'Duzib133G0907' => 'dzi', 'Duzib133G1034' => 'dzi', 'Duzib138G0207' => 'dzi', 'Duzib138G0491' => 'dzi', 'Duzib151G0812' => 'dzi', 'Duzib151G1166' => 'dzi', 'Duzib168G0192' => 'dzi', 'Duzib211G0077' => 'dzi', 'Duzib212G0429' => 'dzi', 'Duzib212G0472' => 'dzi', 'ECA233G2617' => 'eca', 'ECA236G4188' => 'eca', 'ECA240G0936' => 'eca', 'ECA240G1129' => 'eca', 'ECA247G0623' => 'eca', 'EL10Ac5g10451' => 'bvu', 'EL10Ac5g10453' => 'bvu', 'EL10Ac5g10894' => 'bvu', 'Eucgr.H00192' => 'egr', 'Eucgr.H00193' => 'egr', 'Eucgr.H00194' => 'egr', 'Eucgr.J01562' => 'egr', 'Eucgr.K03301' => 'egr', 'FAN02G0632' => 'fan', 'FAN05G5378' => 'fan', 'FAN09G3247' => 'fan', 'FAN12G0435' => 'fan', 'FAN12G2426' => 'fan', 'FAN14G1707' => 'fan', 'FAN14G4725' => 'fan', 'FAN15G2071' => 'fan', 'FAN17G3065' => 'fan', 'FAN19G1376' => 'fan', 'FAN20G0354' => 'fan', 'FAN20G2429' => 'fan', 'FAN20G2658' => 'fan', 'FAN24G2343' => 'fan', 'FAN27G2362' => 'fan', 'FAN28G1765' => 'fan', 'FvH4_1g16020' => 'fve', 'FvH4_2g04890' => 'fve', 'FvH4_2g22270' => 'fve', 'FvH4_4g02630' => 'fve', 'FvH4_4g02640' => 'fve', 'FvH4_6g02650' => 'fve', 'Glyma.02G140600' => 'gma', 'Glyma.03G159900' => 'gma', 'Glyma.05G234800' => 'gma', 'Glyma.07G269600' => 'gma', 'Glyma.08G042300' => 'gma', 'Glyma.10G033500' => 'gma', 'Glyma.10G185200' => 'gma', 'Glyma.17G004300' => 'gma', 'Glyma.19G161900' => 'gma', 'Glyma.20G205100' => 'gma', 'Glyma.20G205200' => 'gma', 'Gohir.A01G139101' => 'ghi', 'Gohir.A02G035600' => 'ghi', 'Gohir.A02G117901' => 'ghi', 'Gohir.A07G210100' => 'ghi', 'Gohir.A07G210200' => 'ghi', 'Gohir.A08G061100' => 'ghi', 'Gohir.A09G223000' => 'ghi', 'Gohir.A09G223100' => 'ghi', 'Gohir.A10G113900' => 'ghi', 'Gohir.A10G114000' => 'ghi', 'Gohir.D02G042300' => 'ghi', 'Gohir.D07G216100' => 'ghi', 'Gohir.D07G216200' => 'ghi', 'Gohir.D08G070400' => 'ghi', 'Gohir.D09G225000' => 'ghi', 'Gohir.D09G225100' => 'ghi', 'Gohir.D10G152300' => 'ghi', 'Gohir.D10G153200' => 'ghi', 'Gohir.D11G133701' => 'ghi', 'Gorai.004G074100' => 'gra', 'Gorai.005G046800' => 'gra', 'Gorai.006G246500' => 'gra', 'Gorai.006G246600' => 'gra', 'Gorai.007G142900' => 'gra', 'Gorai.011G171000' => 'gra', 'Gorai.011G171100' => 'gra', 'Gorai.013G104300' => 'gra', 'Gorai.013G104400' => 'gra', 'GSVIVG01000754001' => 'vvi', 'GSVIVG01000756001' => 'vvi', 'GSVIVG01010903001' => 'vvi', 'GSVIVG01017623001' => 'vvi', 'GSVIVG01018113001' => 'vvi', 'GSVIVG01018116001' => 'vvi', 'GSVIVG01018118001' => 'vvi', 'HanXRQChr03g0076211' => 'han', 'HanXRQChr03g0092431' => 'han', 'HanXRQChr03g0092441' => 'han', 'HanXRQChr03g0092591' => 'han', 'HanXRQChr03g0092671' => 'han', 'HanXRQChr03g0092681' => 'han', 'HanXRQChr03g0092691' => 'han', 'HanXRQChr03g0092701' => 'han', 'HanXRQChr03g0092721' => 'han', 'HanXRQChr03g0092731' => 'han', 'HanXRQChr04g0113681' => 'han', 'HanXRQChr10g0281371' => 'han', 'HanXRQChr11g0337141' => 'han', 'HanXRQChr13g0424521' => 'han', 'HanXRQChr13g0424531' => 'han', 'HanXRQChr13g0424541' => 'han', 'HanXRQChr16g0498221' => 'han', 'Haze_04377' => 'cav', 'Haze_11298' => 'cav', 'Haze_24547' => 'cav', 'Haze_24550' => 'cav', 'Haze_26587' => 'cav', 'Hma1.2p1_0650F.1_g195410' => 'hma', 'Hma1.2p1_0893F.1_g233470' => 'hma', 'HPP92_006508' => 'vpl', 'HPP92_024780' => 'vpl', 'Hund02688' => 'sun', 'Hund09380' => 'sun', 'Hund09381' => 'sun', 'Hund09832' => 'sun', 'Hund09833' => 'sun', 'Hund11351' => 'sun', 'Hund11513' => 'sun', 'Lalb_Chr06g0162591' => 'lal', 'Lalb_Chr06g0162601' => 'lal', 'Lalb_Chr06g0169321' => 'lal', 'Lalb_Chr09g0330951' => 'lal', 'Lalb_Chr16g0387631' => 'lal', 'Lalb_Chr21g0306241' => 'lal', 'Lalb_Chr25g0290051' => 'lal', 'Lalb_Chr25g0290061' => 'lal', 'Lalb_Chr25g0290071' => 'lal', 'Lj1g0003876' => 'lja', 'Lj1P1207T36' => 'lonja', 'Lj2C1156G12' => 'lonja', 'Lj3A793G39' => 'lonja', 'Lj3C580G2' => 'lonja', 'Lj3C780G2' => 'lonja', 'Lj3C780T4' => 'lonja', 'Lj3C793G9' => 'lonja', 'Lj4g0012960' => 'lja', 'Lj5g0021252' => 'lja', 'Lj5g0021484' => 'lja', 'Lj5g0024528' => 'lja', 'Lj6A399T12' => 'lonja', 'Lj6A656G65' => 'lonja', 'Lsat_1_v5_gn_3_125500' => 'lsa', 'Lsat_1_v5_gn_3_125540' => 'lsa', 'Lsat_1_v5_gn_5_72701' => 'lsa', 'Lsat_1_v5_gn_8_91560' => 'lsa', 'Lsat_1_v5_gn_9_9640' => 'lsa', 'Manes.01G200600' => 'mes', 'Manes.01G200700' => 'mes', 'Manes.03G168900' => 'mes', 'Manes.03G169000' => 'mes', 'Manes.05G085801' => 'mes', 'Manes.05G086200' => 'mes', 'Manes.15G036700' => 'mes', 'Manes.15G036900' => 'mes', 'Mapoly0004s0172' => 'mpo', 'Mapoly0023s0001' => 'mpo', 'Mapoly0142s0012' => 'mpo', 'MBI01_g32854_MAGBIO' => 'mbi', 'MBI11_g24427_MAGBIO' => 'mbi', 'MBI11_g47319_MAGBIO' => 'mbi', 'MCO01G433' => 'mco', 'MD00G1187800' => 'mdo', 'MD04G1226500' => 'mdo', 'MD05G1203900' => 'mdo', 'MD10G1191100' => 'mdo', 'MD12G1243500' => 'mdo', 'MD13G1207000' => 'mdo', 'MD13G1207100' => 'mdo', 'MD16G1208600' => 'mdo', 'Medtr1g050352' => 'mtr', 'Medtr1g070385' => 'mtr', 'Medtr1g070450' => 'mtr', 'Medtr1g075200' => 'mtr', 'Medtr1g075250' => 'mtr', 'Medtr1g075260' => 'mtr', 'Medtr1g475250' => 'mtr', 'Medtr4g075450' => 'mtr', 'Medtr7g096300' => 'mtr', 'Medtr8g105110' => 'mtr', 'MELO3C006470.2' => 'cme', 'MELO3C006471.2' => 'cme', 'MELO3C020772.2' => 'cme', 'MELO3C026780.2' => 'cme', 'MELO3C026781.2' => 'cme', 'Migut.D00390' => 'egut', 'Migut.G00435' => 'egut', 'Migut.G00436' => 'egut', 'Migut.G00718' => 'egut', 'MSTRG.21891' => 'ama', 'MSTRG.26910' => 'ama', 'MSTRG.4099' => 'ama', 'MSTRG.9925' => 'ama', 'Nitab4.5_0000165g0010' => 'nta', 'Nitab4.5_0000209g0180' => 'nta', 'Nitab4.5_0000244g0440' => 'nta', 'Nitab4.5_0000525g0220' => 'nta', 'Nitab4.5_0001597g0020' => 'nta', 'Nitab4.5_0001878g0040' => 'nta', 'Nitab4.5_0001878g0060' => 'nta', 'Nitab4.5_0002838g0100' => 'nta', 'Nitab4.5_0002838g0120' => 'nta', 'Nitab4.5_0004798g0030' => 'nta', 'Nitab4.5_0005420g0010' => 'nta', 'Nitab4.5_0005507g0010' => 'nta', 'Nitab4.5_0005574g0020' => 'nta', 'Nitab4.5_0005838g0010' => 'nta', 'Nitab4.5_0010580g0020' => 'nta', 'Nn1g02599' => 'nnu', 'Nn1g02608' => 'nnu', 'Nn3g17742' => 'nnu', 'Nn3g19534' => 'nnu', 'Nn3g19535' => 'nnu', 'Oeu008790.1' => 'oeu', 'Oeu008792.1' => 'oeu', 'Oeu032590.1' => 'oeu', 'Oeu035349.1' => 'oeu', 'Oeu049791.1' => 'oeu', 'Os01g0774500' => 'osa', 'Os03g0628800' => 'osa', 'Os03g0798600' => 'osa', 'Os05g0508800' => 'osa', 'Peaxi162Scf00036g02018' => 'pax', 'Peaxi162Scf00578g00032' => 'pax', 'Peaxi162Scf00578g00317' => 'pax', 'Peaxi162Scf00785g00114' => 'pax', 'Peaxi162Scf00813g00119' => 'pax', 'Peaxi162Scf00906g00227' => 'pax', 'PGR004G0875' => 'pgr', 'PGR004G2424' => 'pgr', 'PGR031G1239' => 'pgr', 'PGR031G2474' => 'pgr', 'PGR044G0423' => 'pgr', 'PGSC0003DMG400001128' => 'stu', 'PGSC0003DMG400007336' => 'stu', 'PGSC0003DMG400016318' => 'stu', 'PGSC0003DMG400016319' => 'stu', 'PGSC0003DMG400018074' => 'stu', 'Phvul.001G157700' => 'pvu', 'Phvul.002G148550' => 'pvu', 'Phvul.002G320200' => 'pvu', 'Phvul.003G089200' => 'pvu', 'Phvul.007G126000' => 'pvu', 'Phvul.007G126100' => 'pvu', 'Phvul.007G178000' => 'pvu', 'Phvul.007G178200' => 'pvu', 'Potri.002G043000' => 'ptr', 'Potri.002G043200' => 'ptr', 'Potri.003G123750' => 'ptr', 'Potri.005G055401' => 'ptr', 'Potri.005G219700' => 'ptr', 'Potri.005G220000' => 'ptr', 'Potri.008G161901' => 'ptr', 'Potri.008G162000' => 'ptr', 'Potri.008G162400' => 'ptr', 'Potri.010G076900' => 'ptr', 'Pp3c12_9180' => 'ppa', 'Pp3c13_19770' => 'ppa', 'Pp3c14_22950' => 'ppa', 'Pp3c16_12160' => 'ppa', 'Pp3c27_7820' => 'ppa', 'Pp3c2_3490' => 'ppa', 'Pp3c3_23700' => 'ppa', 'Pp3c3_36520' => 'ppa', 'Pp3c4_15250' => 'ppa', 'PRCOL_00007002' => 'pco', 'Prupe.1G030600' => 'ppe', 'Prupe.1G030700' => 'ppe', 'Prupe.6G345200' => 'ppe', 'Prupe.8G230300' => 'ppe', 'Prupe.8G230500' => 'ppe', 'Psat3g059600' => 'psa', 'Psat5g200920' => 'psa', 'Psat6g056440' => 'psa', 'Psat6g057360' => 'psa', 'Psat6g134120' => 'psa', 'Psat6g134160' => 'psa', 'Psat7g008640' => 'psa', 'Psat7g185240' => 'psa', 'PSO017G1330' => 'pso', 'PSO063G6097' => 'pso', 'PSO170G0835' => 'pso', 'PSO170G2499' => 'pso', 'PSO210G5058' => 'pso', 'PSO210G6154' => 'pso', 'PSO585G0031' => 'pso', 'PSO832G0264' => 'pso', 'PSO832G4288' => 'pso', 'QL03p027355' => 'qlo', 'QL03p027430' => 'qlo', 'QL04p081380' => 'qlo', 'QL06p015642' => 'qlo', 'QL06p015650' => 'qlo', 'QL06p015686' => 'qlo', 'QL12p042927' => 'qlo', 'QL93p1863_0035' => 'qlo', 'RcHm_v2.0_Chr3g0450581' => 'rch', 'RcHm_v2.0_Chr4g0390371' => 'rch', 'RcHm_v2.0_Chr4g0390381' => 'rch', 'RcHm_v2.0_Chr4g0390491' => 'rch', 'RcHm_v2.0_Chr4g0390501' => 'rch', 'RcHm_v2.0_Chr6g0289231' => 'rch', 'Rhsim04G0190400' => 'rsi', 'Rhsim04G0190500' => 'rsi', 'Rhsim04G0190600' => 'rsi', 'Rhsim13G0031400' => 'rsi', 'Rhsim13G0165600' => 'rsi', 'RhsimUnG0114600' => 'rsi', 'RhsimUnG0114700' => 'rsi', 'Sabra02G0034800' => 'sbr', 'Sabra02G0035100' => 'sbr', 'Sabra05G0168600' => 'sbr', 'Sabra05G0168800' => 'sbr', 'Sabra08G0123700' => 'sbr', 'Sabra10G0031900' => 'sbr', 'Sabra13G0039000' => 'sbr', 'SalBow2G0782' => 'sbo', 'SalBow2G1403' => 'sbo', 'SalBow4G0074' => 'sbo', 'SalBow4G2635' => 'sbo', 'SalBow5G3010' => 'sbo', 'Sc05g0000870' => 'sci', 'Sc05g0000890' => 'sci', 'Sc13g0005000' => 'sci', 'Sc13g0005030' => 'sci', 'Sc19g0003790' => 'sci', 'Sc19g0003800' => 'sci', 'Sed0003467' => 'sed', 'Sed0009355' => 'sed', 'Sed0009894' => 'sed', 'Sed0011972' => 'sed', 'Sed0021483' => 'sed', 'Sed0021750' => 'sed', 'Sed0026279' => 'sed', 'SEGI_05312' => 'sgi', 'SEGI_10112' => 'sgi', 'SEGI_15835' => 'sgi', 'SEGI_30386' => 'sgi', 'SEGI_34122' => 'sgi', 'SEGI_35063' => 'sgi', 'SGA_v2.0_scaffold101G29794' => 'sas', 'SGA_v2.0_scaffold1G00573' => 'sas', 'SGA_v2.0_scaffold79G25637' => 'sas', 'SGA_v2.0_scaffold88G27283' => 'sas', 'SGA_v2.0_scaffold88G27285' => 'sas', 'SGA_v2.0_scaffold88G27331' => 'sas', 'SHI09937' => 'shi', 'SMO119G0302' => 'smo', 'SMO137G0231' => 'smo', 'SMO367G1151' => 'smo', 'Solyc02g082000.3' => 'sly', 'Solyc06g031670.3' => 'sly', 'Solyc06g053810.3' => 'sly', 'Solyc07g025457.1' => 'sly', 'Solyc08g059740.1' => 'sly', 'Solyc08g059750.3' => 'sly', 'Solyc09g083370.3' => 'sly', 'Solyc12g038950.3' => 'sly', 'Sopen02g026630' => 'spe', 'Sopen06g018930' => 'spe', 'Sopen06g018940' => 'spe', 'Sopen08g009460' => 'spe', 'Sopen09g032290' => 'spe', 'Sp1g03080' => 'spa', 'Sp1g03090' => 'spa', 'Sp1g05480' => 'spa', 'Sp2g07860' => 'spa', 'Sp2g08430' => 'spa', 'Sp2g08440' => 'spa', 'Sp2g26200' => 'spa', 'Sp4g13170' => 'spa', 'Sp6g33840' => 'spa', 'SpUn1204_0010' => 'spa', 'TAR365G0908' => 'tar', 'TAR381G1270' => 'tar', 'TAR381G1651' => 'tar', 'TAR625G1131' => 'tar', 'TAR633G0962' => 'tar', 'TAR633G1729' => 'tar', 'TAR633G1864' => 'tar', 'TAR636G0221' => 'tar', 'TAR636G0314' => 'tar', 'TAR636G3202' => 'tar', 'THA.LOC104800805' => 'tha', 'THA.LOC104801096' => 'tha', 'THA.LOC104801555' => 'tha', 'THA.LOC104808491' => 'tha', 'THA.LOC104808595' => 'tha', 'THA.LOC104815985' => 'tha', 'THA.LOC104822250' => 'tha', 'THA.LOC104826071' => 'tha', 'Thecc.01G265200' => 'tca', 'Thecc.01G265300' => 'tca', 'Thecc.01G265700' => 'tca', 'Thecc.03G109100' => 'tca', 'Thecc.04G245900' => 'tca', 'Thecc.04G246000' => 'tca', 'Thhalv10003334m.g' => 'esa', 'Thhalv10005508m.g' => 'esa', 'Thhalv10005643m.g' => 'esa', 'Thhalv10007316m.g' => 'esa', 'Thhalv10009006m.g' => 'esa', 'Thhalv10009309m.g' => 'esa', 'Thhalv10014917m.g' => 'esa', 'Thhalv10014919m.g' => 'esa', 'Thhalv10015393m.g' => 'esa', 'Thhalv10016515m.g' => 'esa', 'Thhalv10029242m.g' => 'esa', 'TPR.G16654' => 'tpr', 'TPR.G20589' => 'tpr', 'TPR.G23029' => 'tpr', 'TPR.G27731' => 'tpr', 'TPR.G28889' => 'tpr', 'TPR.G28899' => 'tpr', 'TPR.G30846' => 'tpr', 'TPR.G5452' => 'tpr', 'TPR.G5713' => 'tpr', 'TPR.G9046' => 'tpr', 'TPR.G9061' => 'tpr', 'TWI09G1075' => 'twi', 'TWI12G0806' => 'twi', 'TWI18G0108' => 'twi', 'TWI53G1361' => 'twi', 'TWI73G0185' => 'twi', 'TWI73G0427' => 'twi', 'unitig_37.g12001' => 'ugi', 'unitig_747.g21660' => 'ugi', 'unitig_748.g7232' => 'ugi', 'unitig_748.g7315' => 'ugi', 'unitig_85.g27262' => 'ugi', 'unitig_92.g28220' => 'ugi', 'vmacro02632' => 'vma', 'vmacro08410' => 'vma', 'vmacro08411' => 'vma', 'vmacro15407' => 'vma', 'VMungo0251G3619' => 'vmu', 'VMungo0720G1204' => 'vmu', 'VMungo0720G1918' => 'vmu', 'VMungo0720G2387' => 'vmu', 'VMungo0720G2961' => 'vmu', 'VMungo1215G2154' => 'vmu', 'VMungo1383G2411' => 'vmu', 'Zm00001eb051130' => 'zma', 'Zm00001eb116830' => 'zma', 'Zm00001eb116850' => 'zma', 'Zm00001eb151740' => 'zma', 'Zm00001eb292360' => 'zma', 'Zm00001eb301640' => 'zma' ), 'gf_id' => 'HOM05D000856', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000856' ), 'data_identifier' => 'HOM05D000856', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000856', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p00010' => 'bna', 'A03p04160' => 'bna', 'A03p17160' => 'bna', 'A04p23370' => 'bna', 'A05p14860' => 'bna', 'A08p37020' => 'bna', 'A09p08050' => 'bna', 'A09p66800' => 'bna', 'A09p67940' => 'bna', 'A10p02680' => 'bna', 'A10p05320' => 'bna', 'Aa31LG1G20560' => 'aar', 'Aa31LG1G20610' => 'aar', 'Aa31LG1G7810' => 'aar', 'Aa31LG5G3590' => 'aar', 'Aa31LG5G6140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3819' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4683' => 'aag', 'Actinidia04480' => 'ach', 'Actinidia05466' => 'ach', 'Actinidia08445' => 'ach', 'Actinidia21170' => 'ach', 'Actinidia24812' => 'ach', 'Actinidia24951' => 'ach', 'Actinidia40088' => 'ach', 'Ah.02g111660' => 'amhyb', 'Ah.11g048900' => 'amhyb', 'Ah.11g049910' => 'amhyb', 'AL1G13870' => 'aly', 'AL1G13880' => 'aly', 'AL1G16760' => 'aly', 'AL390U10020' => 'aly', 'AL4G25520' => 'aly', 'AL6G19890' => 'aly', 'AL6G19900' => 'aly', 'AL6G19910' => 'aly', 'AL8G40100' => 'aly', 'Aqoxy2G03562' => 'aox', 'Aqoxy5G00316' => 'aox', 'Aqoxy5G00926' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1628KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1H403S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2FU6SJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.882I6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8YRY2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YN1SN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AF70II' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZA8L1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F916KL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHRD8H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KTZ8QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S22EMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8M29T' => 'arhy', 'AT1G04270' => 'ath', 'AT1G04280' => 'ath', 'AT1G06750' => 'ath', 'AT1G33850' => 'ath', 'AT2G30630' => 'ath', 'AT5G09490' => 'ath', 'AT5G09500' => 'ath', 'AT5G09510' => 'ath', 'AT5G43640' => 'ath', 'AT5G63070' => 'ath', 'ATR0605G315' => 'atr', 'Atru.chr11.175' => 'acertr', 'Atru.chr11.653' => 'acertr', 'Atru.chr3.1616' => 'acertr', 'Atru.chr4.2230' => 'acertr', 'Atru.chr4.2232' => 'acertr', 'Atru.chr5.1598' => 'acertr', 'Atru.chr5.1600' => 'acertr', 'Atru.chr5.2188' => 'acertr', 'AUR62008326' => 'cqu', 'AUR62011922' => 'cqu', 'AUR62011924' => 'cqu', 'AUR62021771' => 'cqu', 'AUR62032237' => 'cqu', 'AUR62032240' => 'cqu', 'BcaB01g05572' => 'bca', 'BcaB02g10337' => 'bca', 'BcaB04g19944' => 'bca', 'BcaB05g21548' => 'bca', 'BcaB05g21549' => 'bca', 'BcaB05g23227' => 'bca', 'BcaB06g26256' => 'bca', 'BcaB06g26257' => 'bca', 'BcaB06g28379' => 'bca', 'BcaC02g11159' => 'bca', 'BcaC03g13258' => 'bca', 'BcaC03g13259' => 'bca', 'BcaC05g24456' => 'bca', 'BcaC05g24457' => 'bca', 'BcaC07g36922' => 'bca', 'BcaC07g36923' => 'bca', 'BcaC07g42050' => 'bca', 'BcaC07g42176' => 'bca', 'BcaC07g42195' => 'bca', 'BcaC07g42196' => 'bca', 'BcaNung06674' => 'bca', 'BolC2t06351H' => 'bol', 'BolC2t06352H' => 'bol', 'BolC3t12993H' => 'bol', 'BolC4t23525H' => 'bol', 'BolC4t27475H' => 'bol', 'BolC5t29025H' => 'bol', 'BolC5t29026H' => 'bol', 'BolC8t46898H' => 'bol', 'BolC8t46899H' => 'bol', 'BolC8t52630H' => 'bol', 'BolC8t52765H' => 'bol', 'BolC9t53824H' => 'bol', 'BraA03t09760Z' => 'bra', 'BraA03t10990Z' => 'bra', 'BraA05t20413Z' => 'bra', 'BraA08t35602Z' => 'bra', 'BraA09t36458Z' => 'bra', 'BraA09t42018Z' => 'bra', 'BraA09t42129Z' => 'bra', 'BraA10t42536Z' => 'bra', 'BraA10t42537Z' => 'bra', 'C01p10690' => 'bna', 'C02p03890' => 'bna', 'C02p03900' => 'bna', 'C03p04620' => 'bna', 'C04p19870' => 'bna', 'C04p59670' => 'bna', 'C05p02460' => 'bna', 'C05p02470' => 'bna', 'C08p00980' => 'bna', 'C08p00990' => 'bna', 'C08p51030' => 'bna', 'C08p52360' => 'bna', 'C09p09120' => 'bna', 'CAN.G19.15' => 'can', 'CAN.G251.10' => 'can', 'CAN.G251.9' => 'can', 'CAN.G398.24' => 'can', 'CAN.G410.32' => 'can', 'CAN.G881.2' => 'can', 'CANSAT01G3025' => 'cansat', 'CANSAT78G1211' => 'cansat', 'CANSAT78G1218' => 'cansat', 'CANSAT78G1521' => 'cansat', 'CANSAT78G1670' => 'cansat', 'CARHR003600' => 'chi', 'CARHR003610' => 'chi', 'CARHR006290' => 'chi', 'CARHR006430' => 'chi', 'CARHR124110' => 'chi', 'CARHR203870' => 'chi', 'CARHR203880' => 'chi', 'CARHR203890' => 'chi', 'CARHR276880' => 'chi', 'Carub.0001s0346' => 'cru', 'Carub.0001s0347' => 'cru', 'Carub.0001s0607' => 'cru', 'Carub.0003s2768' => 'cru', 'Carub.0003s2769' => 'cru', 'Carub.0004s1178' => 'cru', 'Carub.0006s0806' => 'cru', 'Carub.0006s0807' => 'cru', 'Carub.0006s0808' => 'cru', 'Carub.0008s0501' => 'cru', 'Carub.0008s2379' => 'cru', 'Ca_08655_v3' => 'car', 'Ca_08922_v3' => 'car', 'Ca_08923_v3' => 'car', 'Ca_09119_v3' => 'car', 'Ca_09703_v3' => 'car', 'Ca_09705_v3' => 'car', 'Ca_09835_v3' => 'car', 'Ca_26403_v3' => 'car', 'Ca_30719_v3' => 'car', 'CBR_g17958' => 'cbr', 'CBR_g40516' => 'cbr', 'Cc00_g05350' => 'ccan', 'Cc01_g18690' => 'ccan', 'Cc03_g04830' => 'ccan', 'Cc03_g04850' => 'ccan', 'CDE02G4469' => 'cde', 'CDE06G0883' => 'cde', 'CDE06G1295' => 'cde', 'CDE06G1390' => 'cde', 'CDE07G0584' => 'cde', 'CDE07G1084' => 'cde', 'CDE08G1259' => 'cde', 'Cfa002341' => 'cfa', 'Cfa024337' => 'cfa', 'Ciclev10004749m.g' => 'ccl', 'Ciclev10006127m.g' => 'ccl', 'Ciclev10019720m.g' => 'ccl', 'Ciclev10022652m.g' => 'ccl', 'CiPaw.01G190400' => 'cil', 'CiPaw.01G190500' => 'cil', 'CiPaw.02G116400' => 'cil', 'CiPaw.02G116500' => 'cil', 'CiPaw.04G183000' => 'cil', 'CiPaw.04G183300' => 'cil', 'ClCG05G004610' => 'cla', 'ClCG05G004620' => 'cla', 'ClCG06G006730' => 'cla', 'ClCG06G006740' => 'cla', 'ClCG11G003690' => 'cla', 'COL.COLO4_08276' => 'col', 'COL.COLO4_08277' => 'col', 'COL.COLO4_15787' => 'col', 'COL.COLO4_15789' => 'col', 'Cpa.g.c44815' => 'cpa', 'Cpa.g.sc52.144' => 'cpa', 'Cpa.g.sc58.46' => 'cpa', 'Cpa.g.sc58.47' => 'cpa', 'Cre08.g360900' => 'cre', 'CsaV3_2G013030' => 'csa', 'CsaV3_2G013050' => 'csa', 'CsaV3_2G015620' => 'csa', 'CsaV3_3G012590' => 'csa', 'CsaV3_3G012600' => 'csa', 'CSS0001641' => 'camsi', 'CSS0008310' => 'camsi', 'CSS0013011' => 'camsi', 'CSS0017147' => 'camsi', 'CSS0022970' => 'camsi', 'CSS0025655' => 'camsi', 'CSS0028665' => 'camsi', 'CSS0029117' => 'camsi', 'CSS0032024' => 'camsi', 'CSS0039681' => 'camsi', 'CSS0046516' => 'camsi', 'CSS0050307' => 'camsi', 'DCAR_005871' => 'dca', 'DCAR_007342' => 'dca', 'DCAR_024228' => 'dca', 'DCAR_027277' => 'dca', 'DCAR_030718' => 'dca', 'Dinv20287' => 'din', 'Dinv22461' => 'din', 'Dinv22464' => 'din', 'Dinv29912' => 'din', 'Dinv29913' => 'din', 'Dinv34580' => 'din', 'Dinv34582' => 'din', 'Dinv44632' => 'din', 'Duzib052G0266' => 'dzi', 'Duzib133G0907' => 'dzi', 'Duzib133G1034' => 'dzi', 'Duzib138G0207' => 'dzi', 'Duzib138G0491' => 'dzi', 'Duzib151G0812' => 'dzi', 'Duzib151G1166' => 'dzi', 'Duzib168G0192' => 'dzi', 'Duzib211G0077' => 'dzi', 'Duzib212G0429' => 'dzi', 'Duzib212G0472' => 'dzi', 'ECA233G2617' => 'eca', 'ECA236G4188' => 'eca', 'ECA240G0936' => 'eca', 'ECA240G1129' => 'eca', 'ECA247G0623' => 'eca', 'EL10Ac5g10451' => 'bvu', 'EL10Ac5g10453' => 'bvu', 'EL10Ac5g10894' => 'bvu', 'Eucgr.H00192' => 'egr', 'Eucgr.H00193' => 'egr', 'Eucgr.H00194' => 'egr', 'Eucgr.J01562' => 'egr', 'Eucgr.K03301' => 'egr', 'FAN02G0632' => 'fan', 'FAN05G5378' => 'fan', 'FAN09G3247' => 'fan', 'FAN12G0435' => 'fan', 'FAN12G2426' => 'fan', 'FAN14G1707' => 'fan', 'FAN14G4725' => 'fan', 'FAN15G2071' => 'fan', 'FAN17G3065' => 'fan', 'FAN19G1376' => 'fan', 'FAN20G0354' => 'fan', 'FAN20G2429' => 'fan', 'FAN20G2658' => 'fan', 'FAN24G2343' => 'fan', 'FAN27G2362' => 'fan', 'FAN28G1765' => 'fan', 'FvH4_1g16020' => 'fve', 'FvH4_2g04890' => 'fve', 'FvH4_2g22270' => 'fve', 'FvH4_4g02630' => 'fve', 'FvH4_4g02640' => 'fve', 'FvH4_6g02650' => 'fve', 'Glyma.02G140600' => 'gma', 'Glyma.03G159900' => 'gma', 'Glyma.05G234800' => 'gma', 'Glyma.07G269600' => 'gma', 'Glyma.08G042300' => 'gma', 'Glyma.10G033500' => 'gma', 'Glyma.10G185200' => 'gma', 'Glyma.17G004300' => 'gma', 'Glyma.19G161900' => 'gma', 'Glyma.20G205100' => 'gma', 'Glyma.20G205200' => 'gma', 'Gohir.A01G139101' => 'ghi', 'Gohir.A02G035600' => 'ghi', 'Gohir.A02G117901' => 'ghi', 'Gohir.A07G210100' => 'ghi', 'Gohir.A07G210200' => 'ghi', 'Gohir.A08G061100' => 'ghi', 'Gohir.A09G223000' => 'ghi', 'Gohir.A09G223100' => 'ghi', 'Gohir.A10G113900' => 'ghi', 'Gohir.A10G114000' => 'ghi', 'Gohir.D02G042300' => 'ghi', 'Gohir.D07G216100' => 'ghi', 'Gohir.D07G216200' => 'ghi', 'Gohir.D08G070400' => 'ghi', 'Gohir.D09G225000' => 'ghi', 'Gohir.D09G225100' => 'ghi', 'Gohir.D10G152300' => 'ghi', 'Gohir.D10G153200' => 'ghi', 'Gohir.D11G133701' => 'ghi', 'Gorai.004G074100' => 'gra', 'Gorai.005G046800' => 'gra', 'Gorai.006G246500' => 'gra', 'Gorai.006G246600' => 'gra', 'Gorai.007G142900' => 'gra', 'Gorai.011G171000' => 'gra', 'Gorai.011G171100' => 'gra', 'Gorai.013G104300' => 'gra', 'Gorai.013G104400' => 'gra', 'GSVIVG01000754001' => 'vvi', 'GSVIVG01000756001' => 'vvi', 'GSVIVG01010903001' => 'vvi', 'GSVIVG01017623001' => 'vvi', 'GSVIVG01018113001' => 'vvi', 'GSVIVG01018116001' => 'vvi', 'GSVIVG01018118001' => 'vvi', 'HanXRQChr03g0076211' => 'han', 'HanXRQChr03g0092431' => 'han', 'HanXRQChr03g0092441' => 'han', 'HanXRQChr03g0092591' => 'han', 'HanXRQChr03g0092671' => 'han', 'HanXRQChr03g0092681' => 'han', 'HanXRQChr03g0092691' => 'han', 'HanXRQChr03g0092701' => 'han', 'HanXRQChr03g0092721' => 'han', 'HanXRQChr03g0092731' => 'han', 'HanXRQChr04g0113681' => 'han', 'HanXRQChr10g0281371' => 'han', 'HanXRQChr11g0337141' => 'han', 'HanXRQChr13g0424521' => 'han', 'HanXRQChr13g0424531' => 'han', 'HanXRQChr13g0424541' => 'han', 'HanXRQChr16g0498221' => 'han', 'Haze_04377' => 'cav', 'Haze_11298' => 'cav', 'Haze_24547' => 'cav', 'Haze_24550' => 'cav', 'Haze_26587' => 'cav', 'Hma1.2p1_0650F.1_g195410' => 'hma', 'Hma1.2p1_0893F.1_g233470' => 'hma', 'HPP92_006508' => 'vpl', 'HPP92_024780' => 'vpl', 'Hund02688' => 'sun', 'Hund09380' => 'sun', 'Hund09381' => 'sun', 'Hund09832' => 'sun', 'Hund09833' => 'sun', 'Hund11351' => 'sun', 'Hund11513' => 'sun', 'Lalb_Chr06g0162591' => 'lal', 'Lalb_Chr06g0162601' => 'lal', 'Lalb_Chr06g0169321' => 'lal', 'Lalb_Chr09g0330951' => 'lal', 'Lalb_Chr16g0387631' => 'lal', 'Lalb_Chr21g0306241' => 'lal', 'Lalb_Chr25g0290051' => 'lal', 'Lalb_Chr25g0290061' => 'lal', 'Lalb_Chr25g0290071' => 'lal', 'Lj1g0003876' => 'lja', 'Lj1P1207T36' => 'lonja', 'Lj2C1156G12' => 'lonja', 'Lj3A793G39' => 'lonja', 'Lj3C580G2' => 'lonja', 'Lj3C780G2' => 'lonja', 'Lj3C780T4' => 'lonja', 'Lj3C793G9' => 'lonja', 'Lj4g0012960' => 'lja', 'Lj5g0021252' => 'lja', 'Lj5g0021484' => 'lja', 'Lj5g0024528' => 'lja', 'Lj6A399T12' => 'lonja', 'Lj6A656G65' => 'lonja', 'Lsat_1_v5_gn_3_125500' => 'lsa', 'Lsat_1_v5_gn_3_125540' => 'lsa', 'Lsat_1_v5_gn_5_72701' => 'lsa', 'Lsat_1_v5_gn_8_91560' => 'lsa', 'Lsat_1_v5_gn_9_9640' => 'lsa', 'Manes.01G200600' => 'mes', 'Manes.01G200700' => 'mes', 'Manes.03G168900' => 'mes', 'Manes.03G169000' => 'mes', 'Manes.05G085801' => 'mes', 'Manes.05G086200' => 'mes', 'Manes.15G036700' => 'mes', 'Manes.15G036900' => 'mes', 'Mapoly0004s0172' => 'mpo', 'Mapoly0023s0001' => 'mpo', 'Mapoly0142s0012' => 'mpo', 'MBI01_g32854_MAGBIO' => 'mbi', 'MBI11_g24427_MAGBIO' => 'mbi', 'MBI11_g47319_MAGBIO' => 'mbi', 'MCO01G433' => 'mco', 'MD00G1187800' => 'mdo', 'MD04G1226500' => 'mdo', 'MD05G1203900' => 'mdo', 'MD10G1191100' => 'mdo', 'MD12G1243500' => 'mdo', 'MD13G1207000' => 'mdo', 'MD13G1207100' => 'mdo', 'MD16G1208600' => 'mdo', 'Medtr1g050352' => 'mtr', 'Medtr1g070385' => 'mtr', 'Medtr1g070450' => 'mtr', 'Medtr1g075200' => 'mtr', 'Medtr1g075250' => 'mtr', 'Medtr1g075260' => 'mtr', 'Medtr1g475250' => 'mtr', 'Medtr4g075450' => 'mtr', 'Medtr7g096300' => 'mtr', 'Medtr8g105110' => 'mtr', 'MELO3C006470.2' => 'cme', 'MELO3C006471.2' => 'cme', 'MELO3C020772.2' => 'cme', 'MELO3C026780.2' => 'cme', 'MELO3C026781.2' => 'cme', 'Migut.D00390' => 'egut', 'Migut.G00435' => 'egut', 'Migut.G00436' => 'egut', 'Migut.G00718' => 'egut', 'MSTRG.21891' => 'ama', 'MSTRG.26910' => 'ama', 'MSTRG.4099' => 'ama', 'MSTRG.9925' => 'ama', 'Nitab4.5_0000165g0010' => 'nta', 'Nitab4.5_0000209g0180' => 'nta', 'Nitab4.5_0000244g0440' => 'nta', 'Nitab4.5_0000525g0220' => 'nta', 'Nitab4.5_0001597g0020' => 'nta', 'Nitab4.5_0001878g0040' => 'nta', 'Nitab4.5_0001878g0060' => 'nta', 'Nitab4.5_0002838g0100' => 'nta', 'Nitab4.5_0002838g0120' => 'nta', 'Nitab4.5_0004798g0030' => 'nta', 'Nitab4.5_0005420g0010' => 'nta', 'Nitab4.5_0005507g0010' => 'nta', 'Nitab4.5_0005574g0020' => 'nta', 'Nitab4.5_0005838g0010' => 'nta', 'Nitab4.5_0010580g0020' => 'nta', 'Nn1g02599' => 'nnu', 'Nn1g02608' => 'nnu', 'Nn3g17742' => 'nnu', 'Nn3g19534' => 'nnu', 'Nn3g19535' => 'nnu', 'Oeu008790.1' => 'oeu', 'Oeu008792.1' => 'oeu', 'Oeu032590.1' => 'oeu', 'Oeu035349.1' => 'oeu', 'Oeu049791.1' => 'oeu', 'Os01g0774500' => 'osa', 'Os03g0628800' => 'osa', 'Os03g0798600' => 'osa', 'Os05g0508800' => 'osa', 'Peaxi162Scf00036g02018' => 'pax', 'Peaxi162Scf00578g00032' => 'pax', 'Peaxi162Scf00578g00317' => 'pax', 'Peaxi162Scf00785g00114' => 'pax', 'Peaxi162Scf00813g00119' => 'pax', 'Peaxi162Scf00906g00227' => 'pax', 'PGR004G0875' => 'pgr', 'PGR004G2424' => 'pgr', 'PGR031G1239' => 'pgr', 'PGR031G2474' => 'pgr', 'PGR044G0423' => 'pgr', 'PGSC0003DMG400001128' => 'stu', 'PGSC0003DMG400007336' => 'stu', 'PGSC0003DMG400016318' => 'stu', 'PGSC0003DMG400016319' => 'stu', 'PGSC0003DMG400018074' => 'stu', 'Phvul.001G157700' => 'pvu', 'Phvul.002G148550' => 'pvu', 'Phvul.002G320200' => 'pvu', 'Phvul.003G089200' => 'pvu', 'Phvul.007G126000' => 'pvu', 'Phvul.007G126100' => 'pvu', 'Phvul.007G178000' => 'pvu', 'Phvul.007G178200' => 'pvu', 'Potri.002G043000' => 'ptr', 'Potri.002G043200' => 'ptr', 'Potri.003G123750' => 'ptr', 'Potri.005G055401' => 'ptr', 'Potri.005G219700' => 'ptr', 'Potri.005G220000' => 'ptr', 'Potri.008G161901' => 'ptr', 'Potri.008G162000' => 'ptr', 'Potri.008G162400' => 'ptr', 'Potri.010G076900' => 'ptr', 'Pp3c12_9180' => 'ppa', 'Pp3c13_19770' => 'ppa', 'Pp3c14_22950' => 'ppa', 'Pp3c16_12160' => 'ppa', 'Pp3c27_7820' => 'ppa', 'Pp3c2_3490' => 'ppa', 'Pp3c3_23700' => 'ppa', 'Pp3c3_36520' => 'ppa', 'Pp3c4_15250' => 'ppa', 'PRCOL_00007002' => 'pco', 'Prupe.1G030600' => 'ppe', 'Prupe.1G030700' => 'ppe', 'Prupe.6G345200' => 'ppe', 'Prupe.8G230300' => 'ppe', 'Prupe.8G230500' => 'ppe', 'Psat3g059600' => 'psa', 'Psat5g200920' => 'psa', 'Psat6g056440' => 'psa', 'Psat6g057360' => 'psa', 'Psat6g134120' => 'psa', 'Psat6g134160' => 'psa', 'Psat7g008640' => 'psa', 'Psat7g185240' => 'psa', 'PSO017G1330' => 'pso', 'PSO063G6097' => 'pso', 'PSO170G0835' => 'pso', 'PSO170G2499' => 'pso', 'PSO210G5058' => 'pso', 'PSO210G6154' => 'pso', 'PSO585G0031' => 'pso', 'PSO832G0264' => 'pso', 'PSO832G4288' => 'pso', 'QL03p027355' => 'qlo', 'QL03p027430' => 'qlo', 'QL04p081380' => 'qlo', 'QL06p015642' => 'qlo', 'QL06p015650' => 'qlo', 'QL06p015686' => 'qlo', 'QL12p042927' => 'qlo', 'QL93p1863_0035' => 'qlo', 'RcHm_v2.0_Chr3g0450581' => 'rch', 'RcHm_v2.0_Chr4g0390371' => 'rch', 'RcHm_v2.0_Chr4g0390381' => 'rch', 'RcHm_v2.0_Chr4g0390491' => 'rch', 'RcHm_v2.0_Chr4g0390501' => 'rch', 'RcHm_v2.0_Chr6g0289231' => 'rch', 'Rhsim04G0190400' => 'rsi', 'Rhsim04G0190500' => 'rsi', 'Rhsim04G0190600' => 'rsi', 'Rhsim13G0031400' => 'rsi', 'Rhsim13G0165600' => 'rsi', 'RhsimUnG0114600' => 'rsi', 'RhsimUnG0114700' => 'rsi', 'Sabra02G0034800' => 'sbr', 'Sabra02G0035100' => 'sbr', 'Sabra05G0168600' => 'sbr', 'Sabra05G0168800' => 'sbr', 'Sabra08G0123700' => 'sbr', 'Sabra10G0031900' => 'sbr', 'Sabra13G0039000' => 'sbr', 'SalBow2G0782' => 'sbo', 'SalBow2G1403' => 'sbo', 'SalBow4G0074' => 'sbo', 'SalBow4G2635' => 'sbo', 'SalBow5G3010' => 'sbo', 'Sc05g0000870' => 'sci', 'Sc05g0000890' => 'sci', 'Sc13g0005000' => 'sci', 'Sc13g0005030' => 'sci', 'Sc19g0003790' => 'sci', 'Sc19g0003800' => 'sci', 'Sed0003467' => 'sed', 'Sed0009355' => 'sed', 'Sed0009894' => 'sed', 'Sed0011972' => 'sed', 'Sed0021483' => 'sed', 'Sed0021750' => 'sed', 'Sed0026279' => 'sed', 'SEGI_05312' => 'sgi', 'SEGI_10112' => 'sgi', 'SEGI_15835' => 'sgi', 'SEGI_30386' => 'sgi', 'SEGI_34122' => 'sgi', 'SEGI_35063' => 'sgi', 'SGA_v2.0_scaffold101G29794' => 'sas', 'SGA_v2.0_scaffold1G00573' => 'sas', 'SGA_v2.0_scaffold79G25637' => 'sas', 'SGA_v2.0_scaffold88G27283' => 'sas', 'SGA_v2.0_scaffold88G27285' => 'sas', 'SGA_v2.0_scaffold88G27331' => 'sas', 'SHI09937' => 'shi', 'SMO119G0302' => 'smo', 'SMO137G0231' => 'smo', 'SMO367G1151' => 'smo', 'Solyc02g082000.3' => 'sly', 'Solyc06g031670.3' => 'sly', 'Solyc06g053810.3' => 'sly', 'Solyc07g025457.1' => 'sly', 'Solyc08g059740.1' => 'sly', 'Solyc08g059750.3' => 'sly', 'Solyc09g083370.3' => 'sly', 'Solyc12g038950.3' => 'sly', 'Sopen02g026630' => 'spe', 'Sopen06g018930' => 'spe', 'Sopen06g018940' => 'spe', 'Sopen08g009460' => 'spe', 'Sopen09g032290' => 'spe', 'Sp1g03080' => 'spa', 'Sp1g03090' => 'spa', 'Sp1g05480' => 'spa', 'Sp2g07860' => 'spa', 'Sp2g08430' => 'spa', 'Sp2g08440' => 'spa', 'Sp2g26200' => 'spa', 'Sp4g13170' => 'spa', 'Sp6g33840' => 'spa', 'SpUn1204_0010' => 'spa', 'TAR365G0908' => 'tar', 'TAR381G1270' => 'tar', 'TAR381G1651' => 'tar', 'TAR625G1131' => 'tar', 'TAR633G0962' => 'tar', 'TAR633G1729' => 'tar', 'TAR633G1864' => 'tar', 'TAR636G0221' => 'tar', 'TAR636G0314' => 'tar', 'TAR636G3202' => 'tar', 'THA.LOC104800805' => 'tha', 'THA.LOC104801096' => 'tha', 'THA.LOC104801555' => 'tha', 'THA.LOC104808491' => 'tha', 'THA.LOC104808595' => 'tha', 'THA.LOC104815985' => 'tha', 'THA.LOC104822250' => 'tha', 'THA.LOC104826071' => 'tha', 'Thecc.01G265200' => 'tca', 'Thecc.01G265300' => 'tca', 'Thecc.01G265700' => 'tca', 'Thecc.03G109100' => 'tca', 'Thecc.04G245900' => 'tca', 'Thecc.04G246000' => 'tca', 'Thhalv10003334m.g' => 'esa', 'Thhalv10005508m.g' => 'esa', 'Thhalv10005643m.g' => 'esa', 'Thhalv10007316m.g' => 'esa', 'Thhalv10009006m.g' => 'esa', 'Thhalv10009309m.g' => 'esa', 'Thhalv10014917m.g' => 'esa', 'Thhalv10014919m.g' => 'esa', 'Thhalv10015393m.g' => 'esa', 'Thhalv10016515m.g' => 'esa', 'Thhalv10029242m.g' => 'esa', 'TPR.G16654' => 'tpr', 'TPR.G20589' => 'tpr', 'TPR.G23029' => 'tpr', 'TPR.G27731' => 'tpr', 'TPR.G28889' => 'tpr', 'TPR.G28899' => 'tpr', 'TPR.G30846' => 'tpr', 'TPR.G5452' => 'tpr', 'TPR.G5713' => 'tpr', 'TPR.G9046' => 'tpr', 'TPR.G9061' => 'tpr', 'TWI09G1075' => 'twi', 'TWI12G0806' => 'twi', 'TWI18G0108' => 'twi', 'TWI53G1361' => 'twi', 'TWI73G0185' => 'twi', 'TWI73G0427' => 'twi', 'unitig_37.g12001' => 'ugi', 'unitig_747.g21660' => 'ugi', 'unitig_748.g7232' => 'ugi', 'unitig_748.g7315' => 'ugi', 'unitig_85.g27262' => 'ugi', 'unitig_92.g28220' => 'ugi', 'vmacro02632' => 'vma', 'vmacro08410' => 'vma', 'vmacro08411' => 'vma', 'vmacro15407' => 'vma', 'VMungo0251G3619' => 'vmu', 'VMungo0720G1204' => 'vmu', 'VMungo0720G1918' => 'vmu', 'VMungo0720G2387' => 'vmu', 'VMungo0720G2961' => 'vmu', 'VMungo1215G2154' => 'vmu', 'VMungo1383G2411' => 'vmu', 'Zm00001eb051130' => 'zma', 'Zm00001eb116830' => 'zma', 'Zm00001eb116850' => 'zma', 'Zm00001eb151740' => 'zma', 'Zm00001eb292360' => 'zma', 'Zm00001eb301640' => 'zma' ) $gf_id = 'HOM05D000856' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000856' ) $data_identifier = 'HOM05D000856' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 13, 'ath' => (int) 10, 'atr' => (int) 1, 'acertr' => (int) 8, 'cqu' => (int) 6, 'bca' => (int) 21, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 11, 'car' => (int) 9, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 8, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 5, 'fan' => (int) 16, 'fve' => (int) 6, 'gma' => (int) 11, 'ghi' => (int) 19, 'gra' => (int) 9, 'vvi' => (int) 7, 'han' => (int) 17, 'cav' => (int) 5, 'hma' => (int) 2, 'vpl' => (int) 2, 'sun' => (int) 7, 'lal' => (int) 9, 'lja' => (int) 5, 'lonja' => (int) 9, 'lsa' => (int) 5, 'mes' => (int) 8, 'mpo' => (int) 3, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 10, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 15, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 9, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 9, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 6, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 5, 'spa' => (int) 10, 'tar' => (int) 10, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 11, 'tpr' => (int) 11, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 4, 'vmu' => (int) 7, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb301640' $species_info = array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ) $local_species = 'ugi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000856', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p00010' => 'bna', 'A03p04160' => 'bna', 'A03p17160' => 'bna', 'A04p23370' => 'bna', 'A05p14860' => 'bna', 'A08p37020' => 'bna', 'A09p08050' => 'bna', 'A09p66800' => 'bna', 'A09p67940' => 'bna', 'A10p02680' => 'bna', 'A10p05320' => 'bna', 'Aa31LG1G20560' => 'aar', 'Aa31LG1G20610' => 'aar', 'Aa31LG1G7810' => 'aar', 'Aa31LG5G3590' => 'aar', 'Aa31LG5G6140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3819' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4683' => 'aag', 'Actinidia04480' => 'ach', 'Actinidia05466' => 'ach', 'Actinidia08445' => 'ach', 'Actinidia21170' => 'ach', 'Actinidia24812' => 'ach', 'Actinidia24951' => 'ach', 'Actinidia40088' => 'ach', 'Ah.02g111660' => 'amhyb', 'Ah.11g048900' => 'amhyb', 'Ah.11g049910' => 'amhyb', 'AL1G13870' => 'aly', 'AL1G13880' => 'aly', 'AL1G16760' => 'aly', 'AL390U10020' => 'aly', 'AL4G25520' => 'aly', 'AL6G19890' => 'aly', 'AL6G19900' => 'aly', 'AL6G19910' => 'aly', 'AL8G40100' => 'aly', 'Aqoxy2G03562' => 'aox', 'Aqoxy5G00316' => 'aox', 'Aqoxy5G00926' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1628KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1H403S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2FU6SJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.882I6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8YRY2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YN1SN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AF70II' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZA8L1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F916KL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHRD8H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KTZ8QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S22EMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8M29T' => 'arhy', 'AT1G04270' => 'ath', 'AT1G04280' => 'ath', 'AT1G06750' => 'ath', 'AT1G33850' => 'ath', 'AT2G30630' => 'ath', 'AT5G09490' => 'ath', 'AT5G09500' => 'ath', 'AT5G09510' => 'ath', 'AT5G43640' => 'ath', 'AT5G63070' => 'ath', 'ATR0605G315' => 'atr', 'Atru.chr11.175' => 'acertr', 'Atru.chr11.653' => 'acertr', 'Atru.chr3.1616' => 'acertr', 'Atru.chr4.2230' => 'acertr', 'Atru.chr4.2232' => 'acertr', 'Atru.chr5.1598' => 'acertr', 'Atru.chr5.1600' => 'acertr', 'Atru.chr5.2188' => 'acertr', 'AUR62008326' => 'cqu', 'AUR62011922' => 'cqu', 'AUR62011924' => 'cqu', 'AUR62021771' => 'cqu', 'AUR62032237' => 'cqu', 'AUR62032240' => 'cqu', 'BcaB01g05572' => 'bca', 'BcaB02g10337' => 'bca', 'BcaB04g19944' => 'bca', 'BcaB05g21548' => 'bca', 'BcaB05g21549' => 'bca', 'BcaB05g23227' => 'bca', 'BcaB06g26256' => 'bca', 'BcaB06g26257' => 'bca', 'BcaB06g28379' => 'bca', 'BcaC02g11159' => 'bca', 'BcaC03g13258' => 'bca', 'BcaC03g13259' => 'bca', 'BcaC05g24456' => 'bca', 'BcaC05g24457' => 'bca', 'BcaC07g36922' => 'bca', 'BcaC07g36923' => 'bca', 'BcaC07g42050' => 'bca', 'BcaC07g42176' => 'bca', 'BcaC07g42195' => 'bca', 'BcaC07g42196' => 'bca', 'BcaNung06674' => 'bca', 'BolC2t06351H' => 'bol', 'BolC2t06352H' => 'bol', 'BolC3t12993H' => 'bol', 'BolC4t23525H' => 'bol', 'BolC4t27475H' => 'bol', 'BolC5t29025H' => 'bol', 'BolC5t29026H' => 'bol', 'BolC8t46898H' => 'bol', 'BolC8t46899H' => 'bol', 'BolC8t52630H' => 'bol', 'BolC8t52765H' => 'bol', 'BolC9t53824H' => 'bol', 'BraA03t09760Z' => 'bra', 'BraA03t10990Z' => 'bra', 'BraA05t20413Z' => 'bra', 'BraA08t35602Z' => 'bra', 'BraA09t36458Z' => 'bra', 'BraA09t42018Z' => 'bra', 'BraA09t42129Z' => 'bra', 'BraA10t42536Z' => 'bra', 'BraA10t42537Z' => 'bra', 'C01p10690' => 'bna', 'C02p03890' => 'bna', 'C02p03900' => 'bna', 'C03p04620' => 'bna', 'C04p19870' => 'bna', 'C04p59670' => 'bna', 'C05p02460' => 'bna', 'C05p02470' => 'bna', 'C08p00980' => 'bna', 'C08p00990' => 'bna', 'C08p51030' => 'bna', 'C08p52360' => 'bna', 'C09p09120' => 'bna', 'CAN.G19.15' => 'can', 'CAN.G251.10' => 'can', 'CAN.G251.9' => 'can', 'CAN.G398.24' => 'can', 'CAN.G410.32' => 'can', 'CAN.G881.2' => 'can', 'CANSAT01G3025' => 'cansat', 'CANSAT78G1211' => 'cansat', 'CANSAT78G1218' => 'cansat', 'CANSAT78G1521' => 'cansat', 'CANSAT78G1670' => 'cansat', 'CARHR003600' => 'chi', 'CARHR003610' => 'chi', 'CARHR006290' => 'chi', 'CARHR006430' => 'chi', 'CARHR124110' => 'chi', 'CARHR203870' => 'chi', 'CARHR203880' => 'chi', 'CARHR203890' => 'chi', 'CARHR276880' => 'chi', 'Carub.0001s0346' => 'cru', 'Carub.0001s0347' => 'cru', 'Carub.0001s0607' => 'cru', 'Carub.0003s2768' => 'cru', 'Carub.0003s2769' => 'cru', 'Carub.0004s1178' => 'cru', 'Carub.0006s0806' => 'cru', 'Carub.0006s0807' => 'cru', 'Carub.0006s0808' => 'cru', 'Carub.0008s0501' => 'cru', 'Carub.0008s2379' => 'cru', 'Ca_08655_v3' => 'car', 'Ca_08922_v3' => 'car', 'Ca_08923_v3' => 'car', 'Ca_09119_v3' => 'car', 'Ca_09703_v3' => 'car', 'Ca_09705_v3' => 'car', 'Ca_09835_v3' => 'car', 'Ca_26403_v3' => 'car', 'Ca_30719_v3' => 'car', 'CBR_g17958' => 'cbr', 'CBR_g40516' => 'cbr', 'Cc00_g05350' => 'ccan', 'Cc01_g18690' => 'ccan', 'Cc03_g04830' => 'ccan', 'Cc03_g04850' => 'ccan', 'CDE02G4469' => 'cde', 'CDE06G0883' => 'cde', 'CDE06G1295' => 'cde', 'CDE06G1390' => 'cde', 'CDE07G0584' => 'cde', 'CDE07G1084' => 'cde', 'CDE08G1259' => 'cde', 'Cfa002341' => 'cfa', 'Cfa024337' => 'cfa', 'Ciclev10004749m.g' => 'ccl', 'Ciclev10006127m.g' => 'ccl', 'Ciclev10019720m.g' => 'ccl', 'Ciclev10022652m.g' => 'ccl', 'CiPaw.01G190400' => 'cil', 'CiPaw.01G190500' => 'cil', 'CiPaw.02G116400' => 'cil', 'CiPaw.02G116500' => 'cil', 'CiPaw.04G183000' => 'cil', 'CiPaw.04G183300' => 'cil', 'ClCG05G004610' => 'cla', 'ClCG05G004620' => 'cla', 'ClCG06G006730' => 'cla', 'ClCG06G006740' => 'cla', 'ClCG11G003690' => 'cla', 'COL.COLO4_08276' => 'col', 'COL.COLO4_08277' => 'col', 'COL.COLO4_15787' => 'col', 'COL.COLO4_15789' => 'col', 'Cpa.g.c44815' => 'cpa', 'Cpa.g.sc52.144' => 'cpa', 'Cpa.g.sc58.46' => 'cpa', 'Cpa.g.sc58.47' => 'cpa', 'Cre08.g360900' => 'cre', 'CsaV3_2G013030' => 'csa', 'CsaV3_2G013050' => 'csa', 'CsaV3_2G015620' => 'csa', 'CsaV3_3G012590' => 'csa', 'CsaV3_3G012600' => 'csa', 'CSS0001641' => 'camsi', 'CSS0008310' => 'camsi', 'CSS0013011' => 'camsi', 'CSS0017147' => 'camsi', 'CSS0022970' => 'camsi', 'CSS0025655' => 'camsi', 'CSS0028665' => 'camsi', 'CSS0029117' => 'camsi', 'CSS0032024' => 'camsi', 'CSS0039681' => 'camsi', 'CSS0046516' => 'camsi', 'CSS0050307' => 'camsi', 'DCAR_005871' => 'dca', 'DCAR_007342' => 'dca', 'DCAR_024228' => 'dca', 'DCAR_027277' => 'dca', 'DCAR_030718' => 'dca', 'Dinv20287' => 'din', 'Dinv22461' => 'din', 'Dinv22464' => 'din', 'Dinv29912' => 'din', 'Dinv29913' => 'din', 'Dinv34580' => 'din', 'Dinv34582' => 'din', 'Dinv44632' => 'din', 'Duzib052G0266' => 'dzi', 'Duzib133G0907' => 'dzi', 'Duzib133G1034' => 'dzi', 'Duzib138G0207' => 'dzi', 'Duzib138G0491' => 'dzi', 'Duzib151G0812' => 'dzi', 'Duzib151G1166' => 'dzi', 'Duzib168G0192' => 'dzi', 'Duzib211G0077' => 'dzi', 'Duzib212G0429' => 'dzi', 'Duzib212G0472' => 'dzi', 'ECA233G2617' => 'eca', 'ECA236G4188' => 'eca', 'ECA240G0936' => 'eca', 'ECA240G1129' => 'eca', 'ECA247G0623' => 'eca', 'EL10Ac5g10451' => 'bvu', 'EL10Ac5g10453' => 'bvu', 'EL10Ac5g10894' => 'bvu', 'Eucgr.H00192' => 'egr', 'Eucgr.H00193' => 'egr', 'Eucgr.H00194' => 'egr', 'Eucgr.J01562' => 'egr', 'Eucgr.K03301' => 'egr', 'FAN02G0632' => 'fan', 'FAN05G5378' => 'fan', 'FAN09G3247' => 'fan', 'FAN12G0435' => 'fan', 'FAN12G2426' => 'fan', 'FAN14G1707' => 'fan', 'FAN14G4725' => 'fan', 'FAN15G2071' => 'fan', 'FAN17G3065' => 'fan', 'FAN19G1376' => 'fan', 'FAN20G0354' => 'fan', 'FAN20G2429' => 'fan', 'FAN20G2658' => 'fan', 'FAN24G2343' => 'fan', 'FAN27G2362' => 'fan', 'FAN28G1765' => 'fan', 'FvH4_1g16020' => 'fve', 'FvH4_2g04890' => 'fve', 'FvH4_2g22270' => 'fve', 'FvH4_4g02630' => 'fve', 'FvH4_4g02640' => 'fve', 'FvH4_6g02650' => 'fve', 'Glyma.02G140600' => 'gma', 'Glyma.03G159900' => 'gma', 'Glyma.05G234800' => 'gma', 'Glyma.07G269600' => 'gma', 'Glyma.08G042300' => 'gma', 'Glyma.10G033500' => 'gma', 'Glyma.10G185200' => 'gma', 'Glyma.17G004300' => 'gma', 'Glyma.19G161900' => 'gma', 'Glyma.20G205100' => 'gma', 'Glyma.20G205200' => 'gma', 'Gohir.A01G139101' => 'ghi', 'Gohir.A02G035600' => 'ghi', 'Gohir.A02G117901' => 'ghi', 'Gohir.A07G210100' => 'ghi', 'Gohir.A07G210200' => 'ghi', 'Gohir.A08G061100' => 'ghi', 'Gohir.A09G223000' => 'ghi', 'Gohir.A09G223100' => 'ghi', 'Gohir.A10G113900' => 'ghi', 'Gohir.A10G114000' => 'ghi', 'Gohir.D02G042300' => 'ghi', 'Gohir.D07G216100' => 'ghi', 'Gohir.D07G216200' => 'ghi', 'Gohir.D08G070400' => 'ghi', 'Gohir.D09G225000' => 'ghi', 'Gohir.D09G225100' => 'ghi', 'Gohir.D10G152300' => 'ghi', 'Gohir.D10G153200' => 'ghi', 'Gohir.D11G133701' => 'ghi', 'Gorai.004G074100' => 'gra', 'Gorai.005G046800' => 'gra', 'Gorai.006G246500' => 'gra', 'Gorai.006G246600' => 'gra', 'Gorai.007G142900' => 'gra', 'Gorai.011G171000' => 'gra', 'Gorai.011G171100' => 'gra', 'Gorai.013G104300' => 'gra', 'Gorai.013G104400' => 'gra', 'GSVIVG01000754001' => 'vvi', 'GSVIVG01000756001' => 'vvi', 'GSVIVG01010903001' => 'vvi', 'GSVIVG01017623001' => 'vvi', 'GSVIVG01018113001' => 'vvi', 'GSVIVG01018116001' => 'vvi', 'GSVIVG01018118001' => 'vvi', 'HanXRQChr03g0076211' => 'han', 'HanXRQChr03g0092431' => 'han', 'HanXRQChr03g0092441' => 'han', 'HanXRQChr03g0092591' => 'han', 'HanXRQChr03g0092671' => 'han', 'HanXRQChr03g0092681' => 'han', 'HanXRQChr03g0092691' => 'han', 'HanXRQChr03g0092701' => 'han', 'HanXRQChr03g0092721' => 'han', 'HanXRQChr03g0092731' => 'han', 'HanXRQChr04g0113681' => 'han', 'HanXRQChr10g0281371' => 'han', 'HanXRQChr11g0337141' => 'han', 'HanXRQChr13g0424521' => 'han', 'HanXRQChr13g0424531' => 'han', 'HanXRQChr13g0424541' => 'han', 'HanXRQChr16g0498221' => 'han', 'Haze_04377' => 'cav', 'Haze_11298' => 'cav', 'Haze_24547' => 'cav', 'Haze_24550' => 'cav', 'Haze_26587' => 'cav', 'Hma1.2p1_0650F.1_g195410' => 'hma', 'Hma1.2p1_0893F.1_g233470' => 'hma', 'HPP92_006508' => 'vpl', 'HPP92_024780' => 'vpl', 'Hund02688' => 'sun', 'Hund09380' => 'sun', 'Hund09381' => 'sun', 'Hund09832' => 'sun', 'Hund09833' => 'sun', 'Hund11351' => 'sun', 'Hund11513' => 'sun', 'Lalb_Chr06g0162591' => 'lal', 'Lalb_Chr06g0162601' => 'lal', 'Lalb_Chr06g0169321' => 'lal', 'Lalb_Chr09g0330951' => 'lal', 'Lalb_Chr16g0387631' => 'lal', 'Lalb_Chr21g0306241' => 'lal', 'Lalb_Chr25g0290051' => 'lal', 'Lalb_Chr25g0290061' => 'lal', 'Lalb_Chr25g0290071' => 'lal', 'Lj1g0003876' => 'lja', 'Lj1P1207T36' => 'lonja', 'Lj2C1156G12' => 'lonja', 'Lj3A793G39' => 'lonja', 'Lj3C580G2' => 'lonja', 'Lj3C780G2' => 'lonja', 'Lj3C780T4' => 'lonja', 'Lj3C793G9' => 'lonja', 'Lj4g0012960' => 'lja', 'Lj5g0021252' => 'lja', 'Lj5g0021484' => 'lja', 'Lj5g0024528' => 'lja', 'Lj6A399T12' => 'lonja', 'Lj6A656G65' => 'lonja', 'Lsat_1_v5_gn_3_125500' => 'lsa', 'Lsat_1_v5_gn_3_125540' => 'lsa', 'Lsat_1_v5_gn_5_72701' => 'lsa', 'Lsat_1_v5_gn_8_91560' => 'lsa', 'Lsat_1_v5_gn_9_9640' => 'lsa', 'Manes.01G200600' => 'mes', 'Manes.01G200700' => 'mes', 'Manes.03G168900' => 'mes', 'Manes.03G169000' => 'mes', 'Manes.05G085801' => 'mes', 'Manes.05G086200' => 'mes', 'Manes.15G036700' => 'mes', 'Manes.15G036900' => 'mes', 'Mapoly0004s0172' => 'mpo', 'Mapoly0023s0001' => 'mpo', 'Mapoly0142s0012' => 'mpo', 'MBI01_g32854_MAGBIO' => 'mbi', 'MBI11_g24427_MAGBIO' => 'mbi', 'MBI11_g47319_MAGBIO' => 'mbi', 'MCO01G433' => 'mco', 'MD00G1187800' => 'mdo', 'MD04G1226500' => 'mdo', 'MD05G1203900' => 'mdo', 'MD10G1191100' => 'mdo', 'MD12G1243500' => 'mdo', 'MD13G1207000' => 'mdo', 'MD13G1207100' => 'mdo', 'MD16G1208600' => 'mdo', 'Medtr1g050352' => 'mtr', 'Medtr1g070385' => 'mtr', 'Medtr1g070450' => 'mtr', 'Medtr1g075200' => 'mtr', 'Medtr1g075250' => 'mtr', 'Medtr1g075260' => 'mtr', 'Medtr1g475250' => 'mtr', 'Medtr4g075450' => 'mtr', 'Medtr7g096300' => 'mtr', 'Medtr8g105110' => 'mtr', 'MELO3C006470.2' => 'cme', 'MELO3C006471.2' => 'cme', 'MELO3C020772.2' => 'cme', 'MELO3C026780.2' => 'cme', 'MELO3C026781.2' => 'cme', 'Migut.D00390' => 'egut', 'Migut.G00435' => 'egut', 'Migut.G00436' => 'egut', 'Migut.G00718' => 'egut', 'MSTRG.21891' => 'ama', 'MSTRG.26910' => 'ama', 'MSTRG.4099' => 'ama', 'MSTRG.9925' => 'ama', 'Nitab4.5_0000165g0010' => 'nta', 'Nitab4.5_0000209g0180' => 'nta', 'Nitab4.5_0000244g0440' => 'nta', 'Nitab4.5_0000525g0220' => 'nta', 'Nitab4.5_0001597g0020' => 'nta', 'Nitab4.5_0001878g0040' => 'nta', 'Nitab4.5_0001878g0060' => 'nta', 'Nitab4.5_0002838g0100' => 'nta', 'Nitab4.5_0002838g0120' => 'nta', 'Nitab4.5_0004798g0030' => 'nta', 'Nitab4.5_0005420g0010' => 'nta', 'Nitab4.5_0005507g0010' => 'nta', 'Nitab4.5_0005574g0020' => 'nta', 'Nitab4.5_0005838g0010' => 'nta', 'Nitab4.5_0010580g0020' => 'nta', 'Nn1g02599' => 'nnu', 'Nn1g02608' => 'nnu', 'Nn3g17742' => 'nnu', 'Nn3g19534' => 'nnu', 'Nn3g19535' => 'nnu', 'Oeu008790.1' => 'oeu', 'Oeu008792.1' => 'oeu', 'Oeu032590.1' => 'oeu', 'Oeu035349.1' => 'oeu', 'Oeu049791.1' => 'oeu', 'Os01g0774500' => 'osa', 'Os03g0628800' => 'osa', 'Os03g0798600' => 'osa', 'Os05g0508800' => 'osa', 'Peaxi162Scf00036g02018' => 'pax', 'Peaxi162Scf00578g00032' => 'pax', 'Peaxi162Scf00578g00317' => 'pax', 'Peaxi162Scf00785g00114' => 'pax', 'Peaxi162Scf00813g00119' => 'pax', 'Peaxi162Scf00906g00227' => 'pax', 'PGR004G0875' => 'pgr', 'PGR004G2424' => 'pgr', 'PGR031G1239' => 'pgr', 'PGR031G2474' => 'pgr', 'PGR044G0423' => 'pgr', 'PGSC0003DMG400001128' => 'stu', 'PGSC0003DMG400007336' => 'stu', 'PGSC0003DMG400016318' => 'stu', 'PGSC0003DMG400016319' => 'stu', 'PGSC0003DMG400018074' => 'stu', 'Phvul.001G157700' => 'pvu', 'Phvul.002G148550' => 'pvu', 'Phvul.002G320200' => 'pvu', 'Phvul.003G089200' => 'pvu', 'Phvul.007G126000' => 'pvu', 'Phvul.007G126100' => 'pvu', 'Phvul.007G178000' => 'pvu', 'Phvul.007G178200' => 'pvu', 'Potri.002G043000' => 'ptr', 'Potri.002G043200' => 'ptr', 'Potri.003G123750' => 'ptr', 'Potri.005G055401' => 'ptr', 'Potri.005G219700' => 'ptr', 'Potri.005G220000' => 'ptr', 'Potri.008G161901' => 'ptr', 'Potri.008G162000' => 'ptr', 'Potri.008G162400' => 'ptr', 'Potri.010G076900' => 'ptr', 'Pp3c12_9180' => 'ppa', 'Pp3c13_19770' => 'ppa', 'Pp3c14_22950' => 'ppa', 'Pp3c16_12160' => 'ppa', 'Pp3c27_7820' => 'ppa', 'Pp3c2_3490' => 'ppa', 'Pp3c3_23700' => 'ppa', 'Pp3c3_36520' => 'ppa', 'Pp3c4_15250' => 'ppa', 'PRCOL_00007002' => 'pco', 'Prupe.1G030600' => 'ppe', 'Prupe.1G030700' => 'ppe', 'Prupe.6G345200' => 'ppe', 'Prupe.8G230300' => 'ppe', 'Prupe.8G230500' => 'ppe', 'Psat3g059600' => 'psa', 'Psat5g200920' => 'psa', 'Psat6g056440' => 'psa', 'Psat6g057360' => 'psa', 'Psat6g134120' => 'psa', 'Psat6g134160' => 'psa', 'Psat7g008640' => 'psa', 'Psat7g185240' => 'psa', 'PSO017G1330' => 'pso', 'PSO063G6097' => 'pso', 'PSO170G0835' => 'pso', 'PSO170G2499' => 'pso', 'PSO210G5058' => 'pso', 'PSO210G6154' => 'pso', 'PSO585G0031' => 'pso', 'PSO832G0264' => 'pso', 'PSO832G4288' => 'pso', 'QL03p027355' => 'qlo', 'QL03p027430' => 'qlo', 'QL04p081380' => 'qlo', 'QL06p015642' => 'qlo', 'QL06p015650' => 'qlo', 'QL06p015686' => 'qlo', 'QL12p042927' => 'qlo', 'QL93p1863_0035' => 'qlo', 'RcHm_v2.0_Chr3g0450581' => 'rch', 'RcHm_v2.0_Chr4g0390371' => 'rch', 'RcHm_v2.0_Chr4g0390381' => 'rch', 'RcHm_v2.0_Chr4g0390491' => 'rch', 'RcHm_v2.0_Chr4g0390501' => 'rch', 'RcHm_v2.0_Chr6g0289231' => 'rch', 'Rhsim04G0190400' => 'rsi', 'Rhsim04G0190500' => 'rsi', 'Rhsim04G0190600' => 'rsi', 'Rhsim13G0031400' => 'rsi', 'Rhsim13G0165600' => 'rsi', 'RhsimUnG0114600' => 'rsi', 'RhsimUnG0114700' => 'rsi', 'Sabra02G0034800' => 'sbr', 'Sabra02G0035100' => 'sbr', 'Sabra05G0168600' => 'sbr', 'Sabra05G0168800' => 'sbr', 'Sabra08G0123700' => 'sbr', 'Sabra10G0031900' => 'sbr', 'Sabra13G0039000' => 'sbr', 'SalBow2G0782' => 'sbo', 'SalBow2G1403' => 'sbo', 'SalBow4G0074' => 'sbo', 'SalBow4G2635' => 'sbo', 'SalBow5G3010' => 'sbo', 'Sc05g0000870' => 'sci', 'Sc05g0000890' => 'sci', 'Sc13g0005000' => 'sci', 'Sc13g0005030' => 'sci', 'Sc19g0003790' => 'sci', 'Sc19g0003800' => 'sci', 'Sed0003467' => 'sed', 'Sed0009355' => 'sed', 'Sed0009894' => 'sed', 'Sed0011972' => 'sed', 'Sed0021483' => 'sed', 'Sed0021750' => 'sed', 'Sed0026279' => 'sed', 'SEGI_05312' => 'sgi', 'SEGI_10112' => 'sgi', 'SEGI_15835' => 'sgi', 'SEGI_30386' => 'sgi', 'SEGI_34122' => 'sgi', 'SEGI_35063' => 'sgi', 'SGA_v2.0_scaffold101G29794' => 'sas', 'SGA_v2.0_scaffold1G00573' => 'sas', 'SGA_v2.0_scaffold79G25637' => 'sas', 'SGA_v2.0_scaffold88G27283' => 'sas', 'SGA_v2.0_scaffold88G27285' => 'sas', 'SGA_v2.0_scaffold88G27331' => 'sas', 'SHI09937' => 'shi', 'SMO119G0302' => 'smo', 'SMO137G0231' => 'smo', 'SMO367G1151' => 'smo', 'Solyc02g082000.3' => 'sly', 'Solyc06g031670.3' => 'sly', 'Solyc06g053810.3' => 'sly', 'Solyc07g025457.1' => 'sly', 'Solyc08g059740.1' => 'sly', 'Solyc08g059750.3' => 'sly', 'Solyc09g083370.3' => 'sly', 'Solyc12g038950.3' => 'sly', 'Sopen02g026630' => 'spe', 'Sopen06g018930' => 'spe', 'Sopen06g018940' => 'spe', 'Sopen08g009460' => 'spe', 'Sopen09g032290' => 'spe', 'Sp1g03080' => 'spa', 'Sp1g03090' => 'spa', 'Sp1g05480' => 'spa', 'Sp2g07860' => 'spa', 'Sp2g08430' => 'spa', 'Sp2g08440' => 'spa', 'Sp2g26200' => 'spa', 'Sp4g13170' => 'spa', 'Sp6g33840' => 'spa', 'SpUn1204_0010' => 'spa', 'TAR365G0908' => 'tar', 'TAR381G1270' => 'tar', 'TAR381G1651' => 'tar', 'TAR625G1131' => 'tar', 'TAR633G0962' => 'tar', 'TAR633G1729' => 'tar', 'TAR633G1864' => 'tar', 'TAR636G0221' => 'tar', 'TAR636G0314' => 'tar', 'TAR636G3202' => 'tar', 'THA.LOC104800805' => 'tha', 'THA.LOC104801096' => 'tha', 'THA.LOC104801555' => 'tha', 'THA.LOC104808491' => 'tha', 'THA.LOC104808595' => 'tha', 'THA.LOC104815985' => 'tha', 'THA.LOC104822250' => 'tha', 'THA.LOC104826071' => 'tha', 'Thecc.01G265200' => 'tca', 'Thecc.01G265300' => 'tca', 'Thecc.01G265700' => 'tca', 'Thecc.03G109100' => 'tca', 'Thecc.04G245900' => 'tca', 'Thecc.04G246000' => 'tca', 'Thhalv10003334m.g' => 'esa', 'Thhalv10005508m.g' => 'esa', 'Thhalv10005643m.g' => 'esa', 'Thhalv10007316m.g' => 'esa', 'Thhalv10009006m.g' => 'esa', 'Thhalv10009309m.g' => 'esa', 'Thhalv10014917m.g' => 'esa', 'Thhalv10014919m.g' => 'esa', 'Thhalv10015393m.g' => 'esa', 'Thhalv10016515m.g' => 'esa', 'Thhalv10029242m.g' => 'esa', 'TPR.G16654' => 'tpr', 'TPR.G20589' => 'tpr', 'TPR.G23029' => 'tpr', 'TPR.G27731' => 'tpr', 'TPR.G28889' => 'tpr', 'TPR.G28899' => 'tpr', 'TPR.G30846' => 'tpr', 'TPR.G5452' => 'tpr', 'TPR.G5713' => 'tpr', 'TPR.G9046' => 'tpr', 'TPR.G9061' => 'tpr', 'TWI09G1075' => 'twi', 'TWI12G0806' => 'twi', 'TWI18G0108' => 'twi', 'TWI53G1361' => 'twi', 'TWI73G0185' => 'twi', 'TWI73G0427' => 'twi', 'unitig_37.g12001' => 'ugi', 'unitig_747.g21660' => 'ugi', 'unitig_748.g7232' => 'ugi', 'unitig_748.g7315' => 'ugi', 'unitig_85.g27262' => 'ugi', 'unitig_92.g28220' => 'ugi', 'vmacro02632' => 'vma', 'vmacro08410' => 'vma', 'vmacro08411' => 'vma', 'vmacro15407' => 'vma', 'VMungo0251G3619' => 'vmu', 'VMungo0720G1204' => 'vmu', 'VMungo0720G1918' => 'vmu', 'VMungo0720G2387' => 'vmu', 'VMungo0720G2961' => 'vmu', 'VMungo1215G2154' => 'vmu', 'VMungo1383G2411' => 'vmu', 'Zm00001eb051130' => 'zma', 'Zm00001eb116830' => 'zma', 'Zm00001eb116850' => 'zma', 'Zm00001eb151740' => 'zma', 'Zm00001eb292360' => 'zma', 'Zm00001eb301640' => 'zma' ), 'gf_id' => 'HOM05D000856', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000856' ), 'data_identifier' => 'HOM05D000856', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000856', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p00010' => 'bna', 'A03p04160' => 'bna', 'A03p17160' => 'bna', 'A04p23370' => 'bna', 'A05p14860' => 'bna', 'A08p37020' => 'bna', 'A09p08050' => 'bna', 'A09p66800' => 'bna', 'A09p67940' => 'bna', 'A10p02680' => 'bna', 'A10p05320' => 'bna', 'Aa31LG1G20560' => 'aar', 'Aa31LG1G20610' => 'aar', 'Aa31LG1G7810' => 'aar', 'Aa31LG5G3590' => 'aar', 'Aa31LG5G6140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3819' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4683' => 'aag', 'Actinidia04480' => 'ach', 'Actinidia05466' => 'ach', 'Actinidia08445' => 'ach', 'Actinidia21170' => 'ach', 'Actinidia24812' => 'ach', 'Actinidia24951' => 'ach', 'Actinidia40088' => 'ach', 'Ah.02g111660' => 'amhyb', 'Ah.11g048900' => 'amhyb', 'Ah.11g049910' => 'amhyb', 'AL1G13870' => 'aly', 'AL1G13880' => 'aly', 'AL1G16760' => 'aly', 'AL390U10020' => 'aly', 'AL4G25520' => 'aly', 'AL6G19890' => 'aly', 'AL6G19900' => 'aly', 'AL6G19910' => 'aly', 'AL8G40100' => 'aly', 'Aqoxy2G03562' => 'aox', 'Aqoxy5G00316' => 'aox', 'Aqoxy5G00926' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1628KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1H403S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2FU6SJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.882I6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8YRY2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YN1SN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AF70II' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZA8L1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F916KL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHRD8H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KTZ8QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S22EMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8M29T' => 'arhy', 'AT1G04270' => 'ath', 'AT1G04280' => 'ath', 'AT1G06750' => 'ath', 'AT1G33850' => 'ath', 'AT2G30630' => 'ath', 'AT5G09490' => 'ath', 'AT5G09500' => 'ath', 'AT5G09510' => 'ath', 'AT5G43640' => 'ath', 'AT5G63070' => 'ath', 'ATR0605G315' => 'atr', 'Atru.chr11.175' => 'acertr', 'Atru.chr11.653' => 'acertr', 'Atru.chr3.1616' => 'acertr', 'Atru.chr4.2230' => 'acertr', 'Atru.chr4.2232' => 'acertr', 'Atru.chr5.1598' => 'acertr', 'Atru.chr5.1600' => 'acertr', 'Atru.chr5.2188' => 'acertr', 'AUR62008326' => 'cqu', 'AUR62011922' => 'cqu', 'AUR62011924' => 'cqu', 'AUR62021771' => 'cqu', 'AUR62032237' => 'cqu', 'AUR62032240' => 'cqu', 'BcaB01g05572' => 'bca', 'BcaB02g10337' => 'bca', 'BcaB04g19944' => 'bca', 'BcaB05g21548' => 'bca', 'BcaB05g21549' => 'bca', 'BcaB05g23227' => 'bca', 'BcaB06g26256' => 'bca', 'BcaB06g26257' => 'bca', 'BcaB06g28379' => 'bca', 'BcaC02g11159' => 'bca', 'BcaC03g13258' => 'bca', 'BcaC03g13259' => 'bca', 'BcaC05g24456' => 'bca', 'BcaC05g24457' => 'bca', 'BcaC07g36922' => 'bca', 'BcaC07g36923' => 'bca', 'BcaC07g42050' => 'bca', 'BcaC07g42176' => 'bca', 'BcaC07g42195' => 'bca', 'BcaC07g42196' => 'bca', 'BcaNung06674' => 'bca', 'BolC2t06351H' => 'bol', 'BolC2t06352H' => 'bol', 'BolC3t12993H' => 'bol', 'BolC4t23525H' => 'bol', 'BolC4t27475H' => 'bol', 'BolC5t29025H' => 'bol', 'BolC5t29026H' => 'bol', 'BolC8t46898H' => 'bol', 'BolC8t46899H' => 'bol', 'BolC8t52630H' => 'bol', 'BolC8t52765H' => 'bol', 'BolC9t53824H' => 'bol', 'BraA03t09760Z' => 'bra', 'BraA03t10990Z' => 'bra', 'BraA05t20413Z' => 'bra', 'BraA08t35602Z' => 'bra', 'BraA09t36458Z' => 'bra', 'BraA09t42018Z' => 'bra', 'BraA09t42129Z' => 'bra', 'BraA10t42536Z' => 'bra', 'BraA10t42537Z' => 'bra', 'C01p10690' => 'bna', 'C02p03890' => 'bna', 'C02p03900' => 'bna', 'C03p04620' => 'bna', 'C04p19870' => 'bna', 'C04p59670' => 'bna', 'C05p02460' => 'bna', 'C05p02470' => 'bna', 'C08p00980' => 'bna', 'C08p00990' => 'bna', 'C08p51030' => 'bna', 'C08p52360' => 'bna', 'C09p09120' => 'bna', 'CAN.G19.15' => 'can', 'CAN.G251.10' => 'can', 'CAN.G251.9' => 'can', 'CAN.G398.24' => 'can', 'CAN.G410.32' => 'can', 'CAN.G881.2' => 'can', 'CANSAT01G3025' => 'cansat', 'CANSAT78G1211' => 'cansat', 'CANSAT78G1218' => 'cansat', 'CANSAT78G1521' => 'cansat', 'CANSAT78G1670' => 'cansat', 'CARHR003600' => 'chi', 'CARHR003610' => 'chi', 'CARHR006290' => 'chi', 'CARHR006430' => 'chi', 'CARHR124110' => 'chi', 'CARHR203870' => 'chi', 'CARHR203880' => 'chi', 'CARHR203890' => 'chi', 'CARHR276880' => 'chi', 'Carub.0001s0346' => 'cru', 'Carub.0001s0347' => 'cru', 'Carub.0001s0607' => 'cru', 'Carub.0003s2768' => 'cru', 'Carub.0003s2769' => 'cru', 'Carub.0004s1178' => 'cru', 'Carub.0006s0806' => 'cru', 'Carub.0006s0807' => 'cru', 'Carub.0006s0808' => 'cru', 'Carub.0008s0501' => 'cru', 'Carub.0008s2379' => 'cru', 'Ca_08655_v3' => 'car', 'Ca_08922_v3' => 'car', 'Ca_08923_v3' => 'car', 'Ca_09119_v3' => 'car', 'Ca_09703_v3' => 'car', 'Ca_09705_v3' => 'car', 'Ca_09835_v3' => 'car', 'Ca_26403_v3' => 'car', 'Ca_30719_v3' => 'car', 'CBR_g17958' => 'cbr', 'CBR_g40516' => 'cbr', 'Cc00_g05350' => 'ccan', 'Cc01_g18690' => 'ccan', 'Cc03_g04830' => 'ccan', 'Cc03_g04850' => 'ccan', 'CDE02G4469' => 'cde', 'CDE06G0883' => 'cde', 'CDE06G1295' => 'cde', 'CDE06G1390' => 'cde', 'CDE07G0584' => 'cde', 'CDE07G1084' => 'cde', 'CDE08G1259' => 'cde', 'Cfa002341' => 'cfa', 'Cfa024337' => 'cfa', 'Ciclev10004749m.g' => 'ccl', 'Ciclev10006127m.g' => 'ccl', 'Ciclev10019720m.g' => 'ccl', 'Ciclev10022652m.g' => 'ccl', 'CiPaw.01G190400' => 'cil', 'CiPaw.01G190500' => 'cil', 'CiPaw.02G116400' => 'cil', 'CiPaw.02G116500' => 'cil', 'CiPaw.04G183000' => 'cil', 'CiPaw.04G183300' => 'cil', 'ClCG05G004610' => 'cla', 'ClCG05G004620' => 'cla', 'ClCG06G006730' => 'cla', 'ClCG06G006740' => 'cla', 'ClCG11G003690' => 'cla', 'COL.COLO4_08276' => 'col', 'COL.COLO4_08277' => 'col', 'COL.COLO4_15787' => 'col', 'COL.COLO4_15789' => 'col', 'Cpa.g.c44815' => 'cpa', 'Cpa.g.sc52.144' => 'cpa', 'Cpa.g.sc58.46' => 'cpa', 'Cpa.g.sc58.47' => 'cpa', 'Cre08.g360900' => 'cre', 'CsaV3_2G013030' => 'csa', 'CsaV3_2G013050' => 'csa', 'CsaV3_2G015620' => 'csa', 'CsaV3_3G012590' => 'csa', 'CsaV3_3G012600' => 'csa', 'CSS0001641' => 'camsi', 'CSS0008310' => 'camsi', 'CSS0013011' => 'camsi', 'CSS0017147' => 'camsi', 'CSS0022970' => 'camsi', 'CSS0025655' => 'camsi', 'CSS0028665' => 'camsi', 'CSS0029117' => 'camsi', 'CSS0032024' => 'camsi', 'CSS0039681' => 'camsi', 'CSS0046516' => 'camsi', 'CSS0050307' => 'camsi', 'DCAR_005871' => 'dca', 'DCAR_007342' => 'dca', 'DCAR_024228' => 'dca', 'DCAR_027277' => 'dca', 'DCAR_030718' => 'dca', 'Dinv20287' => 'din', 'Dinv22461' => 'din', 'Dinv22464' => 'din', 'Dinv29912' => 'din', 'Dinv29913' => 'din', 'Dinv34580' => 'din', 'Dinv34582' => 'din', 'Dinv44632' => 'din', 'Duzib052G0266' => 'dzi', 'Duzib133G0907' => 'dzi', 'Duzib133G1034' => 'dzi', 'Duzib138G0207' => 'dzi', 'Duzib138G0491' => 'dzi', 'Duzib151G0812' => 'dzi', 'Duzib151G1166' => 'dzi', 'Duzib168G0192' => 'dzi', 'Duzib211G0077' => 'dzi', 'Duzib212G0429' => 'dzi', 'Duzib212G0472' => 'dzi', 'ECA233G2617' => 'eca', 'ECA236G4188' => 'eca', 'ECA240G0936' => 'eca', 'ECA240G1129' => 'eca', 'ECA247G0623' => 'eca', 'EL10Ac5g10451' => 'bvu', 'EL10Ac5g10453' => 'bvu', 'EL10Ac5g10894' => 'bvu', 'Eucgr.H00192' => 'egr', 'Eucgr.H00193' => 'egr', 'Eucgr.H00194' => 'egr', 'Eucgr.J01562' => 'egr', 'Eucgr.K03301' => 'egr', 'FAN02G0632' => 'fan', 'FAN05G5378' => 'fan', 'FAN09G3247' => 'fan', 'FAN12G0435' => 'fan', 'FAN12G2426' => 'fan', 'FAN14G1707' => 'fan', 'FAN14G4725' => 'fan', 'FAN15G2071' => 'fan', 'FAN17G3065' => 'fan', 'FAN19G1376' => 'fan', 'FAN20G0354' => 'fan', 'FAN20G2429' => 'fan', 'FAN20G2658' => 'fan', 'FAN24G2343' => 'fan', 'FAN27G2362' => 'fan', 'FAN28G1765' => 'fan', 'FvH4_1g16020' => 'fve', 'FvH4_2g04890' => 'fve', 'FvH4_2g22270' => 'fve', 'FvH4_4g02630' => 'fve', 'FvH4_4g02640' => 'fve', 'FvH4_6g02650' => 'fve', 'Glyma.02G140600' => 'gma', 'Glyma.03G159900' => 'gma', 'Glyma.05G234800' => 'gma', 'Glyma.07G269600' => 'gma', 'Glyma.08G042300' => 'gma', 'Glyma.10G033500' => 'gma', 'Glyma.10G185200' => 'gma', 'Glyma.17G004300' => 'gma', 'Glyma.19G161900' => 'gma', 'Glyma.20G205100' => 'gma', 'Glyma.20G205200' => 'gma', 'Gohir.A01G139101' => 'ghi', 'Gohir.A02G035600' => 'ghi', 'Gohir.A02G117901' => 'ghi', 'Gohir.A07G210100' => 'ghi', 'Gohir.A07G210200' => 'ghi', 'Gohir.A08G061100' => 'ghi', 'Gohir.A09G223000' => 'ghi', 'Gohir.A09G223100' => 'ghi', 'Gohir.A10G113900' => 'ghi', 'Gohir.A10G114000' => 'ghi', 'Gohir.D02G042300' => 'ghi', 'Gohir.D07G216100' => 'ghi', 'Gohir.D07G216200' => 'ghi', 'Gohir.D08G070400' => 'ghi', 'Gohir.D09G225000' => 'ghi', 'Gohir.D09G225100' => 'ghi', 'Gohir.D10G152300' => 'ghi', 'Gohir.D10G153200' => 'ghi', 'Gohir.D11G133701' => 'ghi', 'Gorai.004G074100' => 'gra', 'Gorai.005G046800' => 'gra', 'Gorai.006G246500' => 'gra', 'Gorai.006G246600' => 'gra', 'Gorai.007G142900' => 'gra', 'Gorai.011G171000' => 'gra', 'Gorai.011G171100' => 'gra', 'Gorai.013G104300' => 'gra', 'Gorai.013G104400' => 'gra', 'GSVIVG01000754001' => 'vvi', 'GSVIVG01000756001' => 'vvi', 'GSVIVG01010903001' => 'vvi', 'GSVIVG01017623001' => 'vvi', 'GSVIVG01018113001' => 'vvi', 'GSVIVG01018116001' => 'vvi', 'GSVIVG01018118001' => 'vvi', 'HanXRQChr03g0076211' => 'han', 'HanXRQChr03g0092431' => 'han', 'HanXRQChr03g0092441' => 'han', 'HanXRQChr03g0092591' => 'han', 'HanXRQChr03g0092671' => 'han', 'HanXRQChr03g0092681' => 'han', 'HanXRQChr03g0092691' => 'han', 'HanXRQChr03g0092701' => 'han', 'HanXRQChr03g0092721' => 'han', 'HanXRQChr03g0092731' => 'han', 'HanXRQChr04g0113681' => 'han', 'HanXRQChr10g0281371' => 'han', 'HanXRQChr11g0337141' => 'han', 'HanXRQChr13g0424521' => 'han', 'HanXRQChr13g0424531' => 'han', 'HanXRQChr13g0424541' => 'han', 'HanXRQChr16g0498221' => 'han', 'Haze_04377' => 'cav', 'Haze_11298' => 'cav', 'Haze_24547' => 'cav', 'Haze_24550' => 'cav', 'Haze_26587' => 'cav', 'Hma1.2p1_0650F.1_g195410' => 'hma', 'Hma1.2p1_0893F.1_g233470' => 'hma', 'HPP92_006508' => 'vpl', 'HPP92_024780' => 'vpl', 'Hund02688' => 'sun', 'Hund09380' => 'sun', 'Hund09381' => 'sun', 'Hund09832' => 'sun', 'Hund09833' => 'sun', 'Hund11351' => 'sun', 'Hund11513' => 'sun', 'Lalb_Chr06g0162591' => 'lal', 'Lalb_Chr06g0162601' => 'lal', 'Lalb_Chr06g0169321' => 'lal', 'Lalb_Chr09g0330951' => 'lal', 'Lalb_Chr16g0387631' => 'lal', 'Lalb_Chr21g0306241' => 'lal', 'Lalb_Chr25g0290051' => 'lal', 'Lalb_Chr25g0290061' => 'lal', 'Lalb_Chr25g0290071' => 'lal', 'Lj1g0003876' => 'lja', 'Lj1P1207T36' => 'lonja', 'Lj2C1156G12' => 'lonja', 'Lj3A793G39' => 'lonja', 'Lj3C580G2' => 'lonja', 'Lj3C780G2' => 'lonja', 'Lj3C780T4' => 'lonja', 'Lj3C793G9' => 'lonja', 'Lj4g0012960' => 'lja', 'Lj5g0021252' => 'lja', 'Lj5g0021484' => 'lja', 'Lj5g0024528' => 'lja', 'Lj6A399T12' => 'lonja', 'Lj6A656G65' => 'lonja', 'Lsat_1_v5_gn_3_125500' => 'lsa', 'Lsat_1_v5_gn_3_125540' => 'lsa', 'Lsat_1_v5_gn_5_72701' => 'lsa', 'Lsat_1_v5_gn_8_91560' => 'lsa', 'Lsat_1_v5_gn_9_9640' => 'lsa', 'Manes.01G200600' => 'mes', 'Manes.01G200700' => 'mes', 'Manes.03G168900' => 'mes', 'Manes.03G169000' => 'mes', 'Manes.05G085801' => 'mes', 'Manes.05G086200' => 'mes', 'Manes.15G036700' => 'mes', 'Manes.15G036900' => 'mes', 'Mapoly0004s0172' => 'mpo', 'Mapoly0023s0001' => 'mpo', 'Mapoly0142s0012' => 'mpo', 'MBI01_g32854_MAGBIO' => 'mbi', 'MBI11_g24427_MAGBIO' => 'mbi', 'MBI11_g47319_MAGBIO' => 'mbi', 'MCO01G433' => 'mco', 'MD00G1187800' => 'mdo', 'MD04G1226500' => 'mdo', 'MD05G1203900' => 'mdo', 'MD10G1191100' => 'mdo', 'MD12G1243500' => 'mdo', 'MD13G1207000' => 'mdo', 'MD13G1207100' => 'mdo', 'MD16G1208600' => 'mdo', 'Medtr1g050352' => 'mtr', 'Medtr1g070385' => 'mtr', 'Medtr1g070450' => 'mtr', 'Medtr1g075200' => 'mtr', 'Medtr1g075250' => 'mtr', 'Medtr1g075260' => 'mtr', 'Medtr1g475250' => 'mtr', 'Medtr4g075450' => 'mtr', 'Medtr7g096300' => 'mtr', 'Medtr8g105110' => 'mtr', 'MELO3C006470.2' => 'cme', 'MELO3C006471.2' => 'cme', 'MELO3C020772.2' => 'cme', 'MELO3C026780.2' => 'cme', 'MELO3C026781.2' => 'cme', 'Migut.D00390' => 'egut', 'Migut.G00435' => 'egut', 'Migut.G00436' => 'egut', 'Migut.G00718' => 'egut', 'MSTRG.21891' => 'ama', 'MSTRG.26910' => 'ama', 'MSTRG.4099' => 'ama', 'MSTRG.9925' => 'ama', 'Nitab4.5_0000165g0010' => 'nta', 'Nitab4.5_0000209g0180' => 'nta', 'Nitab4.5_0000244g0440' => 'nta', 'Nitab4.5_0000525g0220' => 'nta', 'Nitab4.5_0001597g0020' => 'nta', 'Nitab4.5_0001878g0040' => 'nta', 'Nitab4.5_0001878g0060' => 'nta', 'Nitab4.5_0002838g0100' => 'nta', 'Nitab4.5_0002838g0120' => 'nta', 'Nitab4.5_0004798g0030' => 'nta', 'Nitab4.5_0005420g0010' => 'nta', 'Nitab4.5_0005507g0010' => 'nta', 'Nitab4.5_0005574g0020' => 'nta', 'Nitab4.5_0005838g0010' => 'nta', 'Nitab4.5_0010580g0020' => 'nta', 'Nn1g02599' => 'nnu', 'Nn1g02608' => 'nnu', 'Nn3g17742' => 'nnu', 'Nn3g19534' => 'nnu', 'Nn3g19535' => 'nnu', 'Oeu008790.1' => 'oeu', 'Oeu008792.1' => 'oeu', 'Oeu032590.1' => 'oeu', 'Oeu035349.1' => 'oeu', 'Oeu049791.1' => 'oeu', 'Os01g0774500' => 'osa', 'Os03g0628800' => 'osa', 'Os03g0798600' => 'osa', 'Os05g0508800' => 'osa', 'Peaxi162Scf00036g02018' => 'pax', 'Peaxi162Scf00578g00032' => 'pax', 'Peaxi162Scf00578g00317' => 'pax', 'Peaxi162Scf00785g00114' => 'pax', 'Peaxi162Scf00813g00119' => 'pax', 'Peaxi162Scf00906g00227' => 'pax', 'PGR004G0875' => 'pgr', 'PGR004G2424' => 'pgr', 'PGR031G1239' => 'pgr', 'PGR031G2474' => 'pgr', 'PGR044G0423' => 'pgr', 'PGSC0003DMG400001128' => 'stu', 'PGSC0003DMG400007336' => 'stu', 'PGSC0003DMG400016318' => 'stu', 'PGSC0003DMG400016319' => 'stu', 'PGSC0003DMG400018074' => 'stu', 'Phvul.001G157700' => 'pvu', 'Phvul.002G148550' => 'pvu', 'Phvul.002G320200' => 'pvu', 'Phvul.003G089200' => 'pvu', 'Phvul.007G126000' => 'pvu', 'Phvul.007G126100' => 'pvu', 'Phvul.007G178000' => 'pvu', 'Phvul.007G178200' => 'pvu', 'Potri.002G043000' => 'ptr', 'Potri.002G043200' => 'ptr', 'Potri.003G123750' => 'ptr', 'Potri.005G055401' => 'ptr', 'Potri.005G219700' => 'ptr', 'Potri.005G220000' => 'ptr', 'Potri.008G161901' => 'ptr', 'Potri.008G162000' => 'ptr', 'Potri.008G162400' => 'ptr', 'Potri.010G076900' => 'ptr', 'Pp3c12_9180' => 'ppa', 'Pp3c13_19770' => 'ppa', 'Pp3c14_22950' => 'ppa', 'Pp3c16_12160' => 'ppa', 'Pp3c27_7820' => 'ppa', 'Pp3c2_3490' => 'ppa', 'Pp3c3_23700' => 'ppa', 'Pp3c3_36520' => 'ppa', 'Pp3c4_15250' => 'ppa', 'PRCOL_00007002' => 'pco', 'Prupe.1G030600' => 'ppe', 'Prupe.1G030700' => 'ppe', 'Prupe.6G345200' => 'ppe', 'Prupe.8G230300' => 'ppe', 'Prupe.8G230500' => 'ppe', 'Psat3g059600' => 'psa', 'Psat5g200920' => 'psa', 'Psat6g056440' => 'psa', 'Psat6g057360' => 'psa', 'Psat6g134120' => 'psa', 'Psat6g134160' => 'psa', 'Psat7g008640' => 'psa', 'Psat7g185240' => 'psa', 'PSO017G1330' => 'pso', 'PSO063G6097' => 'pso', 'PSO170G0835' => 'pso', 'PSO170G2499' => 'pso', 'PSO210G5058' => 'pso', 'PSO210G6154' => 'pso', 'PSO585G0031' => 'pso', 'PSO832G0264' => 'pso', 'PSO832G4288' => 'pso', 'QL03p027355' => 'qlo', 'QL03p027430' => 'qlo', 'QL04p081380' => 'qlo', 'QL06p015642' => 'qlo', 'QL06p015650' => 'qlo', 'QL06p015686' => 'qlo', 'QL12p042927' => 'qlo', 'QL93p1863_0035' => 'qlo', 'RcHm_v2.0_Chr3g0450581' => 'rch', 'RcHm_v2.0_Chr4g0390371' => 'rch', 'RcHm_v2.0_Chr4g0390381' => 'rch', 'RcHm_v2.0_Chr4g0390491' => 'rch', 'RcHm_v2.0_Chr4g0390501' => 'rch', 'RcHm_v2.0_Chr6g0289231' => 'rch', 'Rhsim04G0190400' => 'rsi', 'Rhsim04G0190500' => 'rsi', 'Rhsim04G0190600' => 'rsi', 'Rhsim13G0031400' => 'rsi', 'Rhsim13G0165600' => 'rsi', 'RhsimUnG0114600' => 'rsi', 'RhsimUnG0114700' => 'rsi', 'Sabra02G0034800' => 'sbr', 'Sabra02G0035100' => 'sbr', 'Sabra05G0168600' => 'sbr', 'Sabra05G0168800' => 'sbr', 'Sabra08G0123700' => 'sbr', 'Sabra10G0031900' => 'sbr', 'Sabra13G0039000' => 'sbr', 'SalBow2G0782' => 'sbo', 'SalBow2G1403' => 'sbo', 'SalBow4G0074' => 'sbo', 'SalBow4G2635' => 'sbo', 'SalBow5G3010' => 'sbo', 'Sc05g0000870' => 'sci', 'Sc05g0000890' => 'sci', 'Sc13g0005000' => 'sci', 'Sc13g0005030' => 'sci', 'Sc19g0003790' => 'sci', 'Sc19g0003800' => 'sci', 'Sed0003467' => 'sed', 'Sed0009355' => 'sed', 'Sed0009894' => 'sed', 'Sed0011972' => 'sed', 'Sed0021483' => 'sed', 'Sed0021750' => 'sed', 'Sed0026279' => 'sed', 'SEGI_05312' => 'sgi', 'SEGI_10112' => 'sgi', 'SEGI_15835' => 'sgi', 'SEGI_30386' => 'sgi', 'SEGI_34122' => 'sgi', 'SEGI_35063' => 'sgi', 'SGA_v2.0_scaffold101G29794' => 'sas', 'SGA_v2.0_scaffold1G00573' => 'sas', 'SGA_v2.0_scaffold79G25637' => 'sas', 'SGA_v2.0_scaffold88G27283' => 'sas', 'SGA_v2.0_scaffold88G27285' => 'sas', 'SGA_v2.0_scaffold88G27331' => 'sas', 'SHI09937' => 'shi', 'SMO119G0302' => 'smo', 'SMO137G0231' => 'smo', 'SMO367G1151' => 'smo', 'Solyc02g082000.3' => 'sly', 'Solyc06g031670.3' => 'sly', 'Solyc06g053810.3' => 'sly', 'Solyc07g025457.1' => 'sly', 'Solyc08g059740.1' => 'sly', 'Solyc08g059750.3' => 'sly', 'Solyc09g083370.3' => 'sly', 'Solyc12g038950.3' => 'sly', 'Sopen02g026630' => 'spe', 'Sopen06g018930' => 'spe', 'Sopen06g018940' => 'spe', 'Sopen08g009460' => 'spe', 'Sopen09g032290' => 'spe', 'Sp1g03080' => 'spa', 'Sp1g03090' => 'spa', 'Sp1g05480' => 'spa', 'Sp2g07860' => 'spa', 'Sp2g08430' => 'spa', 'Sp2g08440' => 'spa', 'Sp2g26200' => 'spa', 'Sp4g13170' => 'spa', 'Sp6g33840' => 'spa', 'SpUn1204_0010' => 'spa', 'TAR365G0908' => 'tar', 'TAR381G1270' => 'tar', 'TAR381G1651' => 'tar', 'TAR625G1131' => 'tar', 'TAR633G0962' => 'tar', 'TAR633G1729' => 'tar', 'TAR633G1864' => 'tar', 'TAR636G0221' => 'tar', 'TAR636G0314' => 'tar', 'TAR636G3202' => 'tar', 'THA.LOC104800805' => 'tha', 'THA.LOC104801096' => 'tha', 'THA.LOC104801555' => 'tha', 'THA.LOC104808491' => 'tha', 'THA.LOC104808595' => 'tha', 'THA.LOC104815985' => 'tha', 'THA.LOC104822250' => 'tha', 'THA.LOC104826071' => 'tha', 'Thecc.01G265200' => 'tca', 'Thecc.01G265300' => 'tca', 'Thecc.01G265700' => 'tca', 'Thecc.03G109100' => 'tca', 'Thecc.04G245900' => 'tca', 'Thecc.04G246000' => 'tca', 'Thhalv10003334m.g' => 'esa', 'Thhalv10005508m.g' => 'esa', 'Thhalv10005643m.g' => 'esa', 'Thhalv10007316m.g' => 'esa', 'Thhalv10009006m.g' => 'esa', 'Thhalv10009309m.g' => 'esa', 'Thhalv10014917m.g' => 'esa', 'Thhalv10014919m.g' => 'esa', 'Thhalv10015393m.g' => 'esa', 'Thhalv10016515m.g' => 'esa', 'Thhalv10029242m.g' => 'esa', 'TPR.G16654' => 'tpr', 'TPR.G20589' => 'tpr', 'TPR.G23029' => 'tpr', 'TPR.G27731' => 'tpr', 'TPR.G28889' => 'tpr', 'TPR.G28899' => 'tpr', 'TPR.G30846' => 'tpr', 'TPR.G5452' => 'tpr', 'TPR.G5713' => 'tpr', 'TPR.G9046' => 'tpr', 'TPR.G9061' => 'tpr', 'TWI09G1075' => 'twi', 'TWI12G0806' => 'twi', 'TWI18G0108' => 'twi', 'TWI53G1361' => 'twi', 'TWI73G0185' => 'twi', 'TWI73G0427' => 'twi', 'unitig_37.g12001' => 'ugi', 'unitig_747.g21660' => 'ugi', 'unitig_748.g7232' => 'ugi', 'unitig_748.g7315' => 'ugi', 'unitig_85.g27262' => 'ugi', 'unitig_92.g28220' => 'ugi', 'vmacro02632' => 'vma', 'vmacro08410' => 'vma', 'vmacro08411' => 'vma', 'vmacro15407' => 'vma', 'VMungo0251G3619' => 'vmu', 'VMungo0720G1204' => 'vmu', 'VMungo0720G1918' => 'vmu', 'VMungo0720G2387' => 'vmu', 'VMungo0720G2961' => 'vmu', 'VMungo1215G2154' => 'vmu', 'VMungo1383G2411' => 'vmu', 'Zm00001eb051130' => 'zma', 'Zm00001eb116830' => 'zma', 'Zm00001eb116850' => 'zma', 'Zm00001eb151740' => 'zma', 'Zm00001eb292360' => 'zma', 'Zm00001eb301640' => 'zma' ) $gf_id = 'HOM05D000856' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000856' ) $data_identifier = 'HOM05D000856' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 13, 'ath' => (int) 10, 'atr' => (int) 1, 'acertr' => (int) 8, 'cqu' => (int) 6, 'bca' => (int) 21, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 11, 'car' => (int) 9, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 8, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 5, 'fan' => (int) 16, 'fve' => (int) 6, 'gma' => (int) 11, 'ghi' => (int) 19, 'gra' => (int) 9, 'vvi' => (int) 7, 'han' => (int) 17, 'cav' => (int) 5, 'hma' => (int) 2, 'vpl' => (int) 2, 'sun' => (int) 7, 'lal' => (int) 9, 'lja' => (int) 5, 'lonja' => (int) 9, 'lsa' => (int) 5, 'mes' => (int) 8, 'mpo' => (int) 3, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 10, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 15, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 9, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 9, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 6, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 5, 'spa' => (int) 10, 'tar' => (int) 10, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 11, 'tpr' => (int) 11, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 4, 'vmu' => (int) 7, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb301640' $species_info = array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ) $local_species = 'ugi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000856', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p00010' => 'bna', 'A03p04160' => 'bna', 'A03p17160' => 'bna', 'A04p23370' => 'bna', 'A05p14860' => 'bna', 'A08p37020' => 'bna', 'A09p08050' => 'bna', 'A09p66800' => 'bna', 'A09p67940' => 'bna', 'A10p02680' => 'bna', 'A10p05320' => 'bna', 'Aa31LG1G20560' => 'aar', 'Aa31LG1G20610' => 'aar', 'Aa31LG1G7810' => 'aar', 'Aa31LG5G3590' => 'aar', 'Aa31LG5G6140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3819' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4683' => 'aag', 'Actinidia04480' => 'ach', 'Actinidia05466' => 'ach', 'Actinidia08445' => 'ach', 'Actinidia21170' => 'ach', 'Actinidia24812' => 'ach', 'Actinidia24951' => 'ach', 'Actinidia40088' => 'ach', 'Ah.02g111660' => 'amhyb', 'Ah.11g048900' => 'amhyb', 'Ah.11g049910' => 'amhyb', 'AL1G13870' => 'aly', 'AL1G13880' => 'aly', 'AL1G16760' => 'aly', 'AL390U10020' => 'aly', 'AL4G25520' => 'aly', 'AL6G19890' => 'aly', 'AL6G19900' => 'aly', 'AL6G19910' => 'aly', 'AL8G40100' => 'aly', 'Aqoxy2G03562' => 'aox', 'Aqoxy5G00316' => 'aox', 'Aqoxy5G00926' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1628KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1H403S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2FU6SJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.882I6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8YRY2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YN1SN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AF70II' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZA8L1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F916KL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHRD8H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KTZ8QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S22EMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8M29T' => 'arhy', 'AT1G04270' => 'ath', 'AT1G04280' => 'ath', 'AT1G06750' => 'ath', 'AT1G33850' => 'ath', 'AT2G30630' => 'ath', 'AT5G09490' => 'ath', 'AT5G09500' => 'ath', 'AT5G09510' => 'ath', 'AT5G43640' => 'ath', 'AT5G63070' => 'ath', 'ATR0605G315' => 'atr', 'Atru.chr11.175' => 'acertr', 'Atru.chr11.653' => 'acertr', 'Atru.chr3.1616' => 'acertr', 'Atru.chr4.2230' => 'acertr', 'Atru.chr4.2232' => 'acertr', 'Atru.chr5.1598' => 'acertr', 'Atru.chr5.1600' => 'acertr', 'Atru.chr5.2188' => 'acertr', 'AUR62008326' => 'cqu', 'AUR62011922' => 'cqu', 'AUR62011924' => 'cqu', 'AUR62021771' => 'cqu', 'AUR62032237' => 'cqu', 'AUR62032240' => 'cqu', 'BcaB01g05572' => 'bca', 'BcaB02g10337' => 'bca', 'BcaB04g19944' => 'bca', 'BcaB05g21548' => 'bca', 'BcaB05g21549' => 'bca', 'BcaB05g23227' => 'bca', 'BcaB06g26256' => 'bca', 'BcaB06g26257' => 'bca', 'BcaB06g28379' => 'bca', 'BcaC02g11159' => 'bca', 'BcaC03g13258' => 'bca', 'BcaC03g13259' => 'bca', 'BcaC05g24456' => 'bca', 'BcaC05g24457' => 'bca', 'BcaC07g36922' => 'bca', 'BcaC07g36923' => 'bca', 'BcaC07g42050' => 'bca', 'BcaC07g42176' => 'bca', 'BcaC07g42195' => 'bca', 'BcaC07g42196' => 'bca', 'BcaNung06674' => 'bca', 'BolC2t06351H' => 'bol', 'BolC2t06352H' => 'bol', 'BolC3t12993H' => 'bol', 'BolC4t23525H' => 'bol', 'BolC4t27475H' => 'bol', 'BolC5t29025H' => 'bol', 'BolC5t29026H' => 'bol', 'BolC8t46898H' => 'bol', 'BolC8t46899H' => 'bol', 'BolC8t52630H' => 'bol', 'BolC8t52765H' => 'bol', 'BolC9t53824H' => 'bol', 'BraA03t09760Z' => 'bra', 'BraA03t10990Z' => 'bra', 'BraA05t20413Z' => 'bra', 'BraA08t35602Z' => 'bra', 'BraA09t36458Z' => 'bra', 'BraA09t42018Z' => 'bra', 'BraA09t42129Z' => 'bra', 'BraA10t42536Z' => 'bra', 'BraA10t42537Z' => 'bra', 'C01p10690' => 'bna', 'C02p03890' => 'bna', 'C02p03900' => 'bna', 'C03p04620' => 'bna', 'C04p19870' => 'bna', 'C04p59670' => 'bna', 'C05p02460' => 'bna', 'C05p02470' => 'bna', 'C08p00980' => 'bna', 'C08p00990' => 'bna', 'C08p51030' => 'bna', 'C08p52360' => 'bna', 'C09p09120' => 'bna', 'CAN.G19.15' => 'can', 'CAN.G251.10' => 'can', 'CAN.G251.9' => 'can', 'CAN.G398.24' => 'can', 'CAN.G410.32' => 'can', 'CAN.G881.2' => 'can', 'CANSAT01G3025' => 'cansat', 'CANSAT78G1211' => 'cansat', 'CANSAT78G1218' => 'cansat', 'CANSAT78G1521' => 'cansat', 'CANSAT78G1670' => 'cansat', 'CARHR003600' => 'chi', 'CARHR003610' => 'chi', 'CARHR006290' => 'chi', 'CARHR006430' => 'chi', 'CARHR124110' => 'chi', 'CARHR203870' => 'chi', 'CARHR203880' => 'chi', 'CARHR203890' => 'chi', 'CARHR276880' => 'chi', 'Carub.0001s0346' => 'cru', 'Carub.0001s0347' => 'cru', 'Carub.0001s0607' => 'cru', 'Carub.0003s2768' => 'cru', 'Carub.0003s2769' => 'cru', 'Carub.0004s1178' => 'cru', 'Carub.0006s0806' => 'cru', 'Carub.0006s0807' => 'cru', 'Carub.0006s0808' => 'cru', 'Carub.0008s0501' => 'cru', 'Carub.0008s2379' => 'cru', 'Ca_08655_v3' => 'car', 'Ca_08922_v3' => 'car', 'Ca_08923_v3' => 'car', 'Ca_09119_v3' => 'car', 'Ca_09703_v3' => 'car', 'Ca_09705_v3' => 'car', 'Ca_09835_v3' => 'car', 'Ca_26403_v3' => 'car', 'Ca_30719_v3' => 'car', 'CBR_g17958' => 'cbr', 'CBR_g40516' => 'cbr', 'Cc00_g05350' => 'ccan', 'Cc01_g18690' => 'ccan', 'Cc03_g04830' => 'ccan', 'Cc03_g04850' => 'ccan', 'CDE02G4469' => 'cde', 'CDE06G0883' => 'cde', 'CDE06G1295' => 'cde', 'CDE06G1390' => 'cde', 'CDE07G0584' => 'cde', 'CDE07G1084' => 'cde', 'CDE08G1259' => 'cde', 'Cfa002341' => 'cfa', 'Cfa024337' => 'cfa', 'Ciclev10004749m.g' => 'ccl', 'Ciclev10006127m.g' => 'ccl', 'Ciclev10019720m.g' => 'ccl', 'Ciclev10022652m.g' => 'ccl', 'CiPaw.01G190400' => 'cil', 'CiPaw.01G190500' => 'cil', 'CiPaw.02G116400' => 'cil', 'CiPaw.02G116500' => 'cil', 'CiPaw.04G183000' => 'cil', 'CiPaw.04G183300' => 'cil', 'ClCG05G004610' => 'cla', 'ClCG05G004620' => 'cla', 'ClCG06G006730' => 'cla', 'ClCG06G006740' => 'cla', 'ClCG11G003690' => 'cla', 'COL.COLO4_08276' => 'col', 'COL.COLO4_08277' => 'col', 'COL.COLO4_15787' => 'col', 'COL.COLO4_15789' => 'col', 'Cpa.g.c44815' => 'cpa', 'Cpa.g.sc52.144' => 'cpa', 'Cpa.g.sc58.46' => 'cpa', 'Cpa.g.sc58.47' => 'cpa', 'Cre08.g360900' => 'cre', 'CsaV3_2G013030' => 'csa', 'CsaV3_2G013050' => 'csa', 'CsaV3_2G015620' => 'csa', 'CsaV3_3G012590' => 'csa', 'CsaV3_3G012600' => 'csa', 'CSS0001641' => 'camsi', 'CSS0008310' => 'camsi', 'CSS0013011' => 'camsi', 'CSS0017147' => 'camsi', 'CSS0022970' => 'camsi', 'CSS0025655' => 'camsi', 'CSS0028665' => 'camsi', 'CSS0029117' => 'camsi', 'CSS0032024' => 'camsi', 'CSS0039681' => 'camsi', 'CSS0046516' => 'camsi', 'CSS0050307' => 'camsi', 'DCAR_005871' => 'dca', 'DCAR_007342' => 'dca', 'DCAR_024228' => 'dca', 'DCAR_027277' => 'dca', 'DCAR_030718' => 'dca', 'Dinv20287' => 'din', 'Dinv22461' => 'din', 'Dinv22464' => 'din', 'Dinv29912' => 'din', 'Dinv29913' => 'din', 'Dinv34580' => 'din', 'Dinv34582' => 'din', 'Dinv44632' => 'din', 'Duzib052G0266' => 'dzi', 'Duzib133G0907' => 'dzi', 'Duzib133G1034' => 'dzi', 'Duzib138G0207' => 'dzi', 'Duzib138G0491' => 'dzi', 'Duzib151G0812' => 'dzi', 'Duzib151G1166' => 'dzi', 'Duzib168G0192' => 'dzi', 'Duzib211G0077' => 'dzi', 'Duzib212G0429' => 'dzi', 'Duzib212G0472' => 'dzi', 'ECA233G2617' => 'eca', 'ECA236G4188' => 'eca', 'ECA240G0936' => 'eca', 'ECA240G1129' => 'eca', 'ECA247G0623' => 'eca', 'EL10Ac5g10451' => 'bvu', 'EL10Ac5g10453' => 'bvu', 'EL10Ac5g10894' => 'bvu', 'Eucgr.H00192' => 'egr', 'Eucgr.H00193' => 'egr', 'Eucgr.H00194' => 'egr', 'Eucgr.J01562' => 'egr', 'Eucgr.K03301' => 'egr', 'FAN02G0632' => 'fan', 'FAN05G5378' => 'fan', 'FAN09G3247' => 'fan', 'FAN12G0435' => 'fan', 'FAN12G2426' => 'fan', 'FAN14G1707' => 'fan', 'FAN14G4725' => 'fan', 'FAN15G2071' => 'fan', 'FAN17G3065' => 'fan', 'FAN19G1376' => 'fan', 'FAN20G0354' => 'fan', 'FAN20G2429' => 'fan', 'FAN20G2658' => 'fan', 'FAN24G2343' => 'fan', 'FAN27G2362' => 'fan', 'FAN28G1765' => 'fan', 'FvH4_1g16020' => 'fve', 'FvH4_2g04890' => 'fve', 'FvH4_2g22270' => 'fve', 'FvH4_4g02630' => 'fve', 'FvH4_4g02640' => 'fve', 'FvH4_6g02650' => 'fve', 'Glyma.02G140600' => 'gma', 'Glyma.03G159900' => 'gma', 'Glyma.05G234800' => 'gma', 'Glyma.07G269600' => 'gma', 'Glyma.08G042300' => 'gma', 'Glyma.10G033500' => 'gma', 'Glyma.10G185200' => 'gma', 'Glyma.17G004300' => 'gma', 'Glyma.19G161900' => 'gma', 'Glyma.20G205100' => 'gma', 'Glyma.20G205200' => 'gma', 'Gohir.A01G139101' => 'ghi', 'Gohir.A02G035600' => 'ghi', 'Gohir.A02G117901' => 'ghi', 'Gohir.A07G210100' => 'ghi', 'Gohir.A07G210200' => 'ghi', 'Gohir.A08G061100' => 'ghi', 'Gohir.A09G223000' => 'ghi', 'Gohir.A09G223100' => 'ghi', 'Gohir.A10G113900' => 'ghi', 'Gohir.A10G114000' => 'ghi', 'Gohir.D02G042300' => 'ghi', 'Gohir.D07G216100' => 'ghi', 'Gohir.D07G216200' => 'ghi', 'Gohir.D08G070400' => 'ghi', 'Gohir.D09G225000' => 'ghi', 'Gohir.D09G225100' => 'ghi', 'Gohir.D10G152300' => 'ghi', 'Gohir.D10G153200' => 'ghi', 'Gohir.D11G133701' => 'ghi', 'Gorai.004G074100' => 'gra', 'Gorai.005G046800' => 'gra', 'Gorai.006G246500' => 'gra', 'Gorai.006G246600' => 'gra', 'Gorai.007G142900' => 'gra', 'Gorai.011G171000' => 'gra', 'Gorai.011G171100' => 'gra', 'Gorai.013G104300' => 'gra', 'Gorai.013G104400' => 'gra', 'GSVIVG01000754001' => 'vvi', 'GSVIVG01000756001' => 'vvi', 'GSVIVG01010903001' => 'vvi', 'GSVIVG01017623001' => 'vvi', 'GSVIVG01018113001' => 'vvi', 'GSVIVG01018116001' => 'vvi', 'GSVIVG01018118001' => 'vvi', 'HanXRQChr03g0076211' => 'han', 'HanXRQChr03g0092431' => 'han', 'HanXRQChr03g0092441' => 'han', 'HanXRQChr03g0092591' => 'han', 'HanXRQChr03g0092671' => 'han', 'HanXRQChr03g0092681' => 'han', 'HanXRQChr03g0092691' => 'han', 'HanXRQChr03g0092701' => 'han', 'HanXRQChr03g0092721' => 'han', 'HanXRQChr03g0092731' => 'han', 'HanXRQChr04g0113681' => 'han', 'HanXRQChr10g0281371' => 'han', 'HanXRQChr11g0337141' => 'han', 'HanXRQChr13g0424521' => 'han', 'HanXRQChr13g0424531' => 'han', 'HanXRQChr13g0424541' => 'han', 'HanXRQChr16g0498221' => 'han', 'Haze_04377' => 'cav', 'Haze_11298' => 'cav', 'Haze_24547' => 'cav', 'Haze_24550' => 'cav', 'Haze_26587' => 'cav', 'Hma1.2p1_0650F.1_g195410' => 'hma', 'Hma1.2p1_0893F.1_g233470' => 'hma', 'HPP92_006508' => 'vpl', 'HPP92_024780' => 'vpl', 'Hund02688' => 'sun', 'Hund09380' => 'sun', 'Hund09381' => 'sun', 'Hund09832' => 'sun', 'Hund09833' => 'sun', 'Hund11351' => 'sun', 'Hund11513' => 'sun', 'Lalb_Chr06g0162591' => 'lal', 'Lalb_Chr06g0162601' => 'lal', 'Lalb_Chr06g0169321' => 'lal', 'Lalb_Chr09g0330951' => 'lal', 'Lalb_Chr16g0387631' => 'lal', 'Lalb_Chr21g0306241' => 'lal', 'Lalb_Chr25g0290051' => 'lal', 'Lalb_Chr25g0290061' => 'lal', 'Lalb_Chr25g0290071' => 'lal', 'Lj1g0003876' => 'lja', 'Lj1P1207T36' => 'lonja', 'Lj2C1156G12' => 'lonja', 'Lj3A793G39' => 'lonja', 'Lj3C580G2' => 'lonja', 'Lj3C780G2' => 'lonja', 'Lj3C780T4' => 'lonja', 'Lj3C793G9' => 'lonja', 'Lj4g0012960' => 'lja', 'Lj5g0021252' => 'lja', 'Lj5g0021484' => 'lja', 'Lj5g0024528' => 'lja', 'Lj6A399T12' => 'lonja', 'Lj6A656G65' => 'lonja', 'Lsat_1_v5_gn_3_125500' => 'lsa', 'Lsat_1_v5_gn_3_125540' => 'lsa', 'Lsat_1_v5_gn_5_72701' => 'lsa', 'Lsat_1_v5_gn_8_91560' => 'lsa', 'Lsat_1_v5_gn_9_9640' => 'lsa', 'Manes.01G200600' => 'mes', 'Manes.01G200700' => 'mes', 'Manes.03G168900' => 'mes', 'Manes.03G169000' => 'mes', 'Manes.05G085801' => 'mes', 'Manes.05G086200' => 'mes', 'Manes.15G036700' => 'mes', 'Manes.15G036900' => 'mes', 'Mapoly0004s0172' => 'mpo', 'Mapoly0023s0001' => 'mpo', 'Mapoly0142s0012' => 'mpo', 'MBI01_g32854_MAGBIO' => 'mbi', 'MBI11_g24427_MAGBIO' => 'mbi', 'MBI11_g47319_MAGBIO' => 'mbi', 'MCO01G433' => 'mco', 'MD00G1187800' => 'mdo', 'MD04G1226500' => 'mdo', 'MD05G1203900' => 'mdo', 'MD10G1191100' => 'mdo', 'MD12G1243500' => 'mdo', 'MD13G1207000' => 'mdo', 'MD13G1207100' => 'mdo', 'MD16G1208600' => 'mdo', 'Medtr1g050352' => 'mtr', 'Medtr1g070385' => 'mtr', 'Medtr1g070450' => 'mtr', 'Medtr1g075200' => 'mtr', 'Medtr1g075250' => 'mtr', 'Medtr1g075260' => 'mtr', 'Medtr1g475250' => 'mtr', 'Medtr4g075450' => 'mtr', 'Medtr7g096300' => 'mtr', 'Medtr8g105110' => 'mtr', 'MELO3C006470.2' => 'cme', 'MELO3C006471.2' => 'cme', 'MELO3C020772.2' => 'cme', 'MELO3C026780.2' => 'cme', 'MELO3C026781.2' => 'cme', 'Migut.D00390' => 'egut', 'Migut.G00435' => 'egut', 'Migut.G00436' => 'egut', 'Migut.G00718' => 'egut', 'MSTRG.21891' => 'ama', 'MSTRG.26910' => 'ama', 'MSTRG.4099' => 'ama', 'MSTRG.9925' => 'ama', 'Nitab4.5_0000165g0010' => 'nta', 'Nitab4.5_0000209g0180' => 'nta', 'Nitab4.5_0000244g0440' => 'nta', 'Nitab4.5_0000525g0220' => 'nta', 'Nitab4.5_0001597g0020' => 'nta', 'Nitab4.5_0001878g0040' => 'nta', 'Nitab4.5_0001878g0060' => 'nta', 'Nitab4.5_0002838g0100' => 'nta', 'Nitab4.5_0002838g0120' => 'nta', 'Nitab4.5_0004798g0030' => 'nta', 'Nitab4.5_0005420g0010' => 'nta', 'Nitab4.5_0005507g0010' => 'nta', 'Nitab4.5_0005574g0020' => 'nta', 'Nitab4.5_0005838g0010' => 'nta', 'Nitab4.5_0010580g0020' => 'nta', 'Nn1g02599' => 'nnu', 'Nn1g02608' => 'nnu', 'Nn3g17742' => 'nnu', 'Nn3g19534' => 'nnu', 'Nn3g19535' => 'nnu', 'Oeu008790.1' => 'oeu', 'Oeu008792.1' => 'oeu', 'Oeu032590.1' => 'oeu', 'Oeu035349.1' => 'oeu', 'Oeu049791.1' => 'oeu', 'Os01g0774500' => 'osa', 'Os03g0628800' => 'osa', 'Os03g0798600' => 'osa', 'Os05g0508800' => 'osa', 'Peaxi162Scf00036g02018' => 'pax', 'Peaxi162Scf00578g00032' => 'pax', 'Peaxi162Scf00578g00317' => 'pax', 'Peaxi162Scf00785g00114' => 'pax', 'Peaxi162Scf00813g00119' => 'pax', 'Peaxi162Scf00906g00227' => 'pax', 'PGR004G0875' => 'pgr', 'PGR004G2424' => 'pgr', 'PGR031G1239' => 'pgr', 'PGR031G2474' => 'pgr', 'PGR044G0423' => 'pgr', 'PGSC0003DMG400001128' => 'stu', 'PGSC0003DMG400007336' => 'stu', 'PGSC0003DMG400016318' => 'stu', 'PGSC0003DMG400016319' => 'stu', 'PGSC0003DMG400018074' => 'stu', 'Phvul.001G157700' => 'pvu', 'Phvul.002G148550' => 'pvu', 'Phvul.002G320200' => 'pvu', 'Phvul.003G089200' => 'pvu', 'Phvul.007G126000' => 'pvu', 'Phvul.007G126100' => 'pvu', 'Phvul.007G178000' => 'pvu', 'Phvul.007G178200' => 'pvu', 'Potri.002G043000' => 'ptr', 'Potri.002G043200' => 'ptr', 'Potri.003G123750' => 'ptr', 'Potri.005G055401' => 'ptr', 'Potri.005G219700' => 'ptr', 'Potri.005G220000' => 'ptr', 'Potri.008G161901' => 'ptr', 'Potri.008G162000' => 'ptr', 'Potri.008G162400' => 'ptr', 'Potri.010G076900' => 'ptr', 'Pp3c12_9180' => 'ppa', 'Pp3c13_19770' => 'ppa', 'Pp3c14_22950' => 'ppa', 'Pp3c16_12160' => 'ppa', 'Pp3c27_7820' => 'ppa', 'Pp3c2_3490' => 'ppa', 'Pp3c3_23700' => 'ppa', 'Pp3c3_36520' => 'ppa', 'Pp3c4_15250' => 'ppa', 'PRCOL_00007002' => 'pco', 'Prupe.1G030600' => 'ppe', 'Prupe.1G030700' => 'ppe', 'Prupe.6G345200' => 'ppe', 'Prupe.8G230300' => 'ppe', 'Prupe.8G230500' => 'ppe', 'Psat3g059600' => 'psa', 'Psat5g200920' => 'psa', 'Psat6g056440' => 'psa', 'Psat6g057360' => 'psa', 'Psat6g134120' => 'psa', 'Psat6g134160' => 'psa', 'Psat7g008640' => 'psa', 'Psat7g185240' => 'psa', 'PSO017G1330' => 'pso', 'PSO063G6097' => 'pso', 'PSO170G0835' => 'pso', 'PSO170G2499' => 'pso', 'PSO210G5058' => 'pso', 'PSO210G6154' => 'pso', 'PSO585G0031' => 'pso', 'PSO832G0264' => 'pso', 'PSO832G4288' => 'pso', 'QL03p027355' => 'qlo', 'QL03p027430' => 'qlo', 'QL04p081380' => 'qlo', 'QL06p015642' => 'qlo', 'QL06p015650' => 'qlo', 'QL06p015686' => 'qlo', 'QL12p042927' => 'qlo', 'QL93p1863_0035' => 'qlo', 'RcHm_v2.0_Chr3g0450581' => 'rch', 'RcHm_v2.0_Chr4g0390371' => 'rch', 'RcHm_v2.0_Chr4g0390381' => 'rch', 'RcHm_v2.0_Chr4g0390491' => 'rch', 'RcHm_v2.0_Chr4g0390501' => 'rch', 'RcHm_v2.0_Chr6g0289231' => 'rch', 'Rhsim04G0190400' => 'rsi', 'Rhsim04G0190500' => 'rsi', 'Rhsim04G0190600' => 'rsi', 'Rhsim13G0031400' => 'rsi', 'Rhsim13G0165600' => 'rsi', 'RhsimUnG0114600' => 'rsi', 'RhsimUnG0114700' => 'rsi', 'Sabra02G0034800' => 'sbr', 'Sabra02G0035100' => 'sbr', 'Sabra05G0168600' => 'sbr', 'Sabra05G0168800' => 'sbr', 'Sabra08G0123700' => 'sbr', 'Sabra10G0031900' => 'sbr', 'Sabra13G0039000' => 'sbr', 'SalBow2G0782' => 'sbo', 'SalBow2G1403' => 'sbo', 'SalBow4G0074' => 'sbo', 'SalBow4G2635' => 'sbo', 'SalBow5G3010' => 'sbo', 'Sc05g0000870' => 'sci', 'Sc05g0000890' => 'sci', 'Sc13g0005000' => 'sci', 'Sc13g0005030' => 'sci', 'Sc19g0003790' => 'sci', 'Sc19g0003800' => 'sci', 'Sed0003467' => 'sed', 'Sed0009355' => 'sed', 'Sed0009894' => 'sed', 'Sed0011972' => 'sed', 'Sed0021483' => 'sed', 'Sed0021750' => 'sed', 'Sed0026279' => 'sed', 'SEGI_05312' => 'sgi', 'SEGI_10112' => 'sgi', 'SEGI_15835' => 'sgi', 'SEGI_30386' => 'sgi', 'SEGI_34122' => 'sgi', 'SEGI_35063' => 'sgi', 'SGA_v2.0_scaffold101G29794' => 'sas', 'SGA_v2.0_scaffold1G00573' => 'sas', 'SGA_v2.0_scaffold79G25637' => 'sas', 'SGA_v2.0_scaffold88G27283' => 'sas', 'SGA_v2.0_scaffold88G27285' => 'sas', 'SGA_v2.0_scaffold88G27331' => 'sas', 'SHI09937' => 'shi', 'SMO119G0302' => 'smo', 'SMO137G0231' => 'smo', 'SMO367G1151' => 'smo', 'Solyc02g082000.3' => 'sly', 'Solyc06g031670.3' => 'sly', 'Solyc06g053810.3' => 'sly', 'Solyc07g025457.1' => 'sly', 'Solyc08g059740.1' => 'sly', 'Solyc08g059750.3' => 'sly', 'Solyc09g083370.3' => 'sly', 'Solyc12g038950.3' => 'sly', 'Sopen02g026630' => 'spe', 'Sopen06g018930' => 'spe', 'Sopen06g018940' => 'spe', 'Sopen08g009460' => 'spe', 'Sopen09g032290' => 'spe', 'Sp1g03080' => 'spa', 'Sp1g03090' => 'spa', 'Sp1g05480' => 'spa', 'Sp2g07860' => 'spa', 'Sp2g08430' => 'spa', 'Sp2g08440' => 'spa', 'Sp2g26200' => 'spa', 'Sp4g13170' => 'spa', 'Sp6g33840' => 'spa', 'SpUn1204_0010' => 'spa', 'TAR365G0908' => 'tar', 'TAR381G1270' => 'tar', 'TAR381G1651' => 'tar', 'TAR625G1131' => 'tar', 'TAR633G0962' => 'tar', 'TAR633G1729' => 'tar', 'TAR633G1864' => 'tar', 'TAR636G0221' => 'tar', 'TAR636G0314' => 'tar', 'TAR636G3202' => 'tar', 'THA.LOC104800805' => 'tha', 'THA.LOC104801096' => 'tha', 'THA.LOC104801555' => 'tha', 'THA.LOC104808491' => 'tha', 'THA.LOC104808595' => 'tha', 'THA.LOC104815985' => 'tha', 'THA.LOC104822250' => 'tha', 'THA.LOC104826071' => 'tha', 'Thecc.01G265200' => 'tca', 'Thecc.01G265300' => 'tca', 'Thecc.01G265700' => 'tca', 'Thecc.03G109100' => 'tca', 'Thecc.04G245900' => 'tca', 'Thecc.04G246000' => 'tca', 'Thhalv10003334m.g' => 'esa', 'Thhalv10005508m.g' => 'esa', 'Thhalv10005643m.g' => 'esa', 'Thhalv10007316m.g' => 'esa', 'Thhalv10009006m.g' => 'esa', 'Thhalv10009309m.g' => 'esa', 'Thhalv10014917m.g' => 'esa', 'Thhalv10014919m.g' => 'esa', 'Thhalv10015393m.g' => 'esa', 'Thhalv10016515m.g' => 'esa', 'Thhalv10029242m.g' => 'esa', 'TPR.G16654' => 'tpr', 'TPR.G20589' => 'tpr', 'TPR.G23029' => 'tpr', 'TPR.G27731' => 'tpr', 'TPR.G28889' => 'tpr', 'TPR.G28899' => 'tpr', 'TPR.G30846' => 'tpr', 'TPR.G5452' => 'tpr', 'TPR.G5713' => 'tpr', 'TPR.G9046' => 'tpr', 'TPR.G9061' => 'tpr', 'TWI09G1075' => 'twi', 'TWI12G0806' => 'twi', 'TWI18G0108' => 'twi', 'TWI53G1361' => 'twi', 'TWI73G0185' => 'twi', 'TWI73G0427' => 'twi', 'unitig_37.g12001' => 'ugi', 'unitig_747.g21660' => 'ugi', 'unitig_748.g7232' => 'ugi', 'unitig_748.g7315' => 'ugi', 'unitig_85.g27262' => 'ugi', 'unitig_92.g28220' => 'ugi', 'vmacro02632' => 'vma', 'vmacro08410' => 'vma', 'vmacro08411' => 'vma', 'vmacro15407' => 'vma', 'VMungo0251G3619' => 'vmu', 'VMungo0720G1204' => 'vmu', 'VMungo0720G1918' => 'vmu', 'VMungo0720G2387' => 'vmu', 'VMungo0720G2961' => 'vmu', 'VMungo1215G2154' => 'vmu', 'VMungo1383G2411' => 'vmu', 'Zm00001eb051130' => 'zma', 'Zm00001eb116830' => 'zma', 'Zm00001eb116850' => 'zma', 'Zm00001eb151740' => 'zma', 'Zm00001eb292360' => 'zma', 'Zm00001eb301640' => 'zma' ), 'gf_id' => 'HOM05D000856', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000856' ), 'data_identifier' => 'HOM05D000856', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000856', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p00010' => 'bna', 'A03p04160' => 'bna', 'A03p17160' => 'bna', 'A04p23370' => 'bna', 'A05p14860' => 'bna', 'A08p37020' => 'bna', 'A09p08050' => 'bna', 'A09p66800' => 'bna', 'A09p67940' => 'bna', 'A10p02680' => 'bna', 'A10p05320' => 'bna', 'Aa31LG1G20560' => 'aar', 'Aa31LG1G20610' => 'aar', 'Aa31LG1G7810' => 'aar', 'Aa31LG5G3590' => 'aar', 'Aa31LG5G6140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3819' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4683' => 'aag', 'Actinidia04480' => 'ach', 'Actinidia05466' => 'ach', 'Actinidia08445' => 'ach', 'Actinidia21170' => 'ach', 'Actinidia24812' => 'ach', 'Actinidia24951' => 'ach', 'Actinidia40088' => 'ach', 'Ah.02g111660' => 'amhyb', 'Ah.11g048900' => 'amhyb', 'Ah.11g049910' => 'amhyb', 'AL1G13870' => 'aly', 'AL1G13880' => 'aly', 'AL1G16760' => 'aly', 'AL390U10020' => 'aly', 'AL4G25520' => 'aly', 'AL6G19890' => 'aly', 'AL6G19900' => 'aly', 'AL6G19910' => 'aly', 'AL8G40100' => 'aly', 'Aqoxy2G03562' => 'aox', 'Aqoxy5G00316' => 'aox', 'Aqoxy5G00926' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1628KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1H403S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2FU6SJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.882I6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8YRY2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YN1SN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AF70II' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZA8L1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F916KL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHRD8H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KTZ8QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S22EMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8M29T' => 'arhy', 'AT1G04270' => 'ath', 'AT1G04280' => 'ath', 'AT1G06750' => 'ath', 'AT1G33850' => 'ath', 'AT2G30630' => 'ath', 'AT5G09490' => 'ath', 'AT5G09500' => 'ath', 'AT5G09510' => 'ath', 'AT5G43640' => 'ath', 'AT5G63070' => 'ath', 'ATR0605G315' => 'atr', 'Atru.chr11.175' => 'acertr', 'Atru.chr11.653' => 'acertr', 'Atru.chr3.1616' => 'acertr', 'Atru.chr4.2230' => 'acertr', 'Atru.chr4.2232' => 'acertr', 'Atru.chr5.1598' => 'acertr', 'Atru.chr5.1600' => 'acertr', 'Atru.chr5.2188' => 'acertr', 'AUR62008326' => 'cqu', 'AUR62011922' => 'cqu', 'AUR62011924' => 'cqu', 'AUR62021771' => 'cqu', 'AUR62032237' => 'cqu', 'AUR62032240' => 'cqu', 'BcaB01g05572' => 'bca', 'BcaB02g10337' => 'bca', 'BcaB04g19944' => 'bca', 'BcaB05g21548' => 'bca', 'BcaB05g21549' => 'bca', 'BcaB05g23227' => 'bca', 'BcaB06g26256' => 'bca', 'BcaB06g26257' => 'bca', 'BcaB06g28379' => 'bca', 'BcaC02g11159' => 'bca', 'BcaC03g13258' => 'bca', 'BcaC03g13259' => 'bca', 'BcaC05g24456' => 'bca', 'BcaC05g24457' => 'bca', 'BcaC07g36922' => 'bca', 'BcaC07g36923' => 'bca', 'BcaC07g42050' => 'bca', 'BcaC07g42176' => 'bca', 'BcaC07g42195' => 'bca', 'BcaC07g42196' => 'bca', 'BcaNung06674' => 'bca', 'BolC2t06351H' => 'bol', 'BolC2t06352H' => 'bol', 'BolC3t12993H' => 'bol', 'BolC4t23525H' => 'bol', 'BolC4t27475H' => 'bol', 'BolC5t29025H' => 'bol', 'BolC5t29026H' => 'bol', 'BolC8t46898H' => 'bol', 'BolC8t46899H' => 'bol', 'BolC8t52630H' => 'bol', 'BolC8t52765H' => 'bol', 'BolC9t53824H' => 'bol', 'BraA03t09760Z' => 'bra', 'BraA03t10990Z' => 'bra', 'BraA05t20413Z' => 'bra', 'BraA08t35602Z' => 'bra', 'BraA09t36458Z' => 'bra', 'BraA09t42018Z' => 'bra', 'BraA09t42129Z' => 'bra', 'BraA10t42536Z' => 'bra', 'BraA10t42537Z' => 'bra', 'C01p10690' => 'bna', 'C02p03890' => 'bna', 'C02p03900' => 'bna', 'C03p04620' => 'bna', 'C04p19870' => 'bna', 'C04p59670' => 'bna', 'C05p02460' => 'bna', 'C05p02470' => 'bna', 'C08p00980' => 'bna', 'C08p00990' => 'bna', 'C08p51030' => 'bna', 'C08p52360' => 'bna', 'C09p09120' => 'bna', 'CAN.G19.15' => 'can', 'CAN.G251.10' => 'can', 'CAN.G251.9' => 'can', 'CAN.G398.24' => 'can', 'CAN.G410.32' => 'can', 'CAN.G881.2' => 'can', 'CANSAT01G3025' => 'cansat', 'CANSAT78G1211' => 'cansat', 'CANSAT78G1218' => 'cansat', 'CANSAT78G1521' => 'cansat', 'CANSAT78G1670' => 'cansat', 'CARHR003600' => 'chi', 'CARHR003610' => 'chi', 'CARHR006290' => 'chi', 'CARHR006430' => 'chi', 'CARHR124110' => 'chi', 'CARHR203870' => 'chi', 'CARHR203880' => 'chi', 'CARHR203890' => 'chi', 'CARHR276880' => 'chi', 'Carub.0001s0346' => 'cru', 'Carub.0001s0347' => 'cru', 'Carub.0001s0607' => 'cru', 'Carub.0003s2768' => 'cru', 'Carub.0003s2769' => 'cru', 'Carub.0004s1178' => 'cru', 'Carub.0006s0806' => 'cru', 'Carub.0006s0807' => 'cru', 'Carub.0006s0808' => 'cru', 'Carub.0008s0501' => 'cru', 'Carub.0008s2379' => 'cru', 'Ca_08655_v3' => 'car', 'Ca_08922_v3' => 'car', 'Ca_08923_v3' => 'car', 'Ca_09119_v3' => 'car', 'Ca_09703_v3' => 'car', 'Ca_09705_v3' => 'car', 'Ca_09835_v3' => 'car', 'Ca_26403_v3' => 'car', 'Ca_30719_v3' => 'car', 'CBR_g17958' => 'cbr', 'CBR_g40516' => 'cbr', 'Cc00_g05350' => 'ccan', 'Cc01_g18690' => 'ccan', 'Cc03_g04830' => 'ccan', 'Cc03_g04850' => 'ccan', 'CDE02G4469' => 'cde', 'CDE06G0883' => 'cde', 'CDE06G1295' => 'cde', 'CDE06G1390' => 'cde', 'CDE07G0584' => 'cde', 'CDE07G1084' => 'cde', 'CDE08G1259' => 'cde', 'Cfa002341' => 'cfa', 'Cfa024337' => 'cfa', 'Ciclev10004749m.g' => 'ccl', 'Ciclev10006127m.g' => 'ccl', 'Ciclev10019720m.g' => 'ccl', 'Ciclev10022652m.g' => 'ccl', 'CiPaw.01G190400' => 'cil', 'CiPaw.01G190500' => 'cil', 'CiPaw.02G116400' => 'cil', 'CiPaw.02G116500' => 'cil', 'CiPaw.04G183000' => 'cil', 'CiPaw.04G183300' => 'cil', 'ClCG05G004610' => 'cla', 'ClCG05G004620' => 'cla', 'ClCG06G006730' => 'cla', 'ClCG06G006740' => 'cla', 'ClCG11G003690' => 'cla', 'COL.COLO4_08276' => 'col', 'COL.COLO4_08277' => 'col', 'COL.COLO4_15787' => 'col', 'COL.COLO4_15789' => 'col', 'Cpa.g.c44815' => 'cpa', 'Cpa.g.sc52.144' => 'cpa', 'Cpa.g.sc58.46' => 'cpa', 'Cpa.g.sc58.47' => 'cpa', 'Cre08.g360900' => 'cre', 'CsaV3_2G013030' => 'csa', 'CsaV3_2G013050' => 'csa', 'CsaV3_2G015620' => 'csa', 'CsaV3_3G012590' => 'csa', 'CsaV3_3G012600' => 'csa', 'CSS0001641' => 'camsi', 'CSS0008310' => 'camsi', 'CSS0013011' => 'camsi', 'CSS0017147' => 'camsi', 'CSS0022970' => 'camsi', 'CSS0025655' => 'camsi', 'CSS0028665' => 'camsi', 'CSS0029117' => 'camsi', 'CSS0032024' => 'camsi', 'CSS0039681' => 'camsi', 'CSS0046516' => 'camsi', 'CSS0050307' => 'camsi', 'DCAR_005871' => 'dca', 'DCAR_007342' => 'dca', 'DCAR_024228' => 'dca', 'DCAR_027277' => 'dca', 'DCAR_030718' => 'dca', 'Dinv20287' => 'din', 'Dinv22461' => 'din', 'Dinv22464' => 'din', 'Dinv29912' => 'din', 'Dinv29913' => 'din', 'Dinv34580' => 'din', 'Dinv34582' => 'din', 'Dinv44632' => 'din', 'Duzib052G0266' => 'dzi', 'Duzib133G0907' => 'dzi', 'Duzib133G1034' => 'dzi', 'Duzib138G0207' => 'dzi', 'Duzib138G0491' => 'dzi', 'Duzib151G0812' => 'dzi', 'Duzib151G1166' => 'dzi', 'Duzib168G0192' => 'dzi', 'Duzib211G0077' => 'dzi', 'Duzib212G0429' => 'dzi', 'Duzib212G0472' => 'dzi', 'ECA233G2617' => 'eca', 'ECA236G4188' => 'eca', 'ECA240G0936' => 'eca', 'ECA240G1129' => 'eca', 'ECA247G0623' => 'eca', 'EL10Ac5g10451' => 'bvu', 'EL10Ac5g10453' => 'bvu', 'EL10Ac5g10894' => 'bvu', 'Eucgr.H00192' => 'egr', 'Eucgr.H00193' => 'egr', 'Eucgr.H00194' => 'egr', 'Eucgr.J01562' => 'egr', 'Eucgr.K03301' => 'egr', 'FAN02G0632' => 'fan', 'FAN05G5378' => 'fan', 'FAN09G3247' => 'fan', 'FAN12G0435' => 'fan', 'FAN12G2426' => 'fan', 'FAN14G1707' => 'fan', 'FAN14G4725' => 'fan', 'FAN15G2071' => 'fan', 'FAN17G3065' => 'fan', 'FAN19G1376' => 'fan', 'FAN20G0354' => 'fan', 'FAN20G2429' => 'fan', 'FAN20G2658' => 'fan', 'FAN24G2343' => 'fan', 'FAN27G2362' => 'fan', 'FAN28G1765' => 'fan', 'FvH4_1g16020' => 'fve', 'FvH4_2g04890' => 'fve', 'FvH4_2g22270' => 'fve', 'FvH4_4g02630' => 'fve', 'FvH4_4g02640' => 'fve', 'FvH4_6g02650' => 'fve', 'Glyma.02G140600' => 'gma', 'Glyma.03G159900' => 'gma', 'Glyma.05G234800' => 'gma', 'Glyma.07G269600' => 'gma', 'Glyma.08G042300' => 'gma', 'Glyma.10G033500' => 'gma', 'Glyma.10G185200' => 'gma', 'Glyma.17G004300' => 'gma', 'Glyma.19G161900' => 'gma', 'Glyma.20G205100' => 'gma', 'Glyma.20G205200' => 'gma', 'Gohir.A01G139101' => 'ghi', 'Gohir.A02G035600' => 'ghi', 'Gohir.A02G117901' => 'ghi', 'Gohir.A07G210100' => 'ghi', 'Gohir.A07G210200' => 'ghi', 'Gohir.A08G061100' => 'ghi', 'Gohir.A09G223000' => 'ghi', 'Gohir.A09G223100' => 'ghi', 'Gohir.A10G113900' => 'ghi', 'Gohir.A10G114000' => 'ghi', 'Gohir.D02G042300' => 'ghi', 'Gohir.D07G216100' => 'ghi', 'Gohir.D07G216200' => 'ghi', 'Gohir.D08G070400' => 'ghi', 'Gohir.D09G225000' => 'ghi', 'Gohir.D09G225100' => 'ghi', 'Gohir.D10G152300' => 'ghi', 'Gohir.D10G153200' => 'ghi', 'Gohir.D11G133701' => 'ghi', 'Gorai.004G074100' => 'gra', 'Gorai.005G046800' => 'gra', 'Gorai.006G246500' => 'gra', 'Gorai.006G246600' => 'gra', 'Gorai.007G142900' => 'gra', 'Gorai.011G171000' => 'gra', 'Gorai.011G171100' => 'gra', 'Gorai.013G104300' => 'gra', 'Gorai.013G104400' => 'gra', 'GSVIVG01000754001' => 'vvi', 'GSVIVG01000756001' => 'vvi', 'GSVIVG01010903001' => 'vvi', 'GSVIVG01017623001' => 'vvi', 'GSVIVG01018113001' => 'vvi', 'GSVIVG01018116001' => 'vvi', 'GSVIVG01018118001' => 'vvi', 'HanXRQChr03g0076211' => 'han', 'HanXRQChr03g0092431' => 'han', 'HanXRQChr03g0092441' => 'han', 'HanXRQChr03g0092591' => 'han', 'HanXRQChr03g0092671' => 'han', 'HanXRQChr03g0092681' => 'han', 'HanXRQChr03g0092691' => 'han', 'HanXRQChr03g0092701' => 'han', 'HanXRQChr03g0092721' => 'han', 'HanXRQChr03g0092731' => 'han', 'HanXRQChr04g0113681' => 'han', 'HanXRQChr10g0281371' => 'han', 'HanXRQChr11g0337141' => 'han', 'HanXRQChr13g0424521' => 'han', 'HanXRQChr13g0424531' => 'han', 'HanXRQChr13g0424541' => 'han', 'HanXRQChr16g0498221' => 'han', 'Haze_04377' => 'cav', 'Haze_11298' => 'cav', 'Haze_24547' => 'cav', 'Haze_24550' => 'cav', 'Haze_26587' => 'cav', 'Hma1.2p1_0650F.1_g195410' => 'hma', 'Hma1.2p1_0893F.1_g233470' => 'hma', 'HPP92_006508' => 'vpl', 'HPP92_024780' => 'vpl', 'Hund02688' => 'sun', 'Hund09380' => 'sun', 'Hund09381' => 'sun', 'Hund09832' => 'sun', 'Hund09833' => 'sun', 'Hund11351' => 'sun', 'Hund11513' => 'sun', 'Lalb_Chr06g0162591' => 'lal', 'Lalb_Chr06g0162601' => 'lal', 'Lalb_Chr06g0169321' => 'lal', 'Lalb_Chr09g0330951' => 'lal', 'Lalb_Chr16g0387631' => 'lal', 'Lalb_Chr21g0306241' => 'lal', 'Lalb_Chr25g0290051' => 'lal', 'Lalb_Chr25g0290061' => 'lal', 'Lalb_Chr25g0290071' => 'lal', 'Lj1g0003876' => 'lja', 'Lj1P1207T36' => 'lonja', 'Lj2C1156G12' => 'lonja', 'Lj3A793G39' => 'lonja', 'Lj3C580G2' => 'lonja', 'Lj3C780G2' => 'lonja', 'Lj3C780T4' => 'lonja', 'Lj3C793G9' => 'lonja', 'Lj4g0012960' => 'lja', 'Lj5g0021252' => 'lja', 'Lj5g0021484' => 'lja', 'Lj5g0024528' => 'lja', 'Lj6A399T12' => 'lonja', 'Lj6A656G65' => 'lonja', 'Lsat_1_v5_gn_3_125500' => 'lsa', 'Lsat_1_v5_gn_3_125540' => 'lsa', 'Lsat_1_v5_gn_5_72701' => 'lsa', 'Lsat_1_v5_gn_8_91560' => 'lsa', 'Lsat_1_v5_gn_9_9640' => 'lsa', 'Manes.01G200600' => 'mes', 'Manes.01G200700' => 'mes', 'Manes.03G168900' => 'mes', 'Manes.03G169000' => 'mes', 'Manes.05G085801' => 'mes', 'Manes.05G086200' => 'mes', 'Manes.15G036700' => 'mes', 'Manes.15G036900' => 'mes', 'Mapoly0004s0172' => 'mpo', 'Mapoly0023s0001' => 'mpo', 'Mapoly0142s0012' => 'mpo', 'MBI01_g32854_MAGBIO' => 'mbi', 'MBI11_g24427_MAGBIO' => 'mbi', 'MBI11_g47319_MAGBIO' => 'mbi', 'MCO01G433' => 'mco', 'MD00G1187800' => 'mdo', 'MD04G1226500' => 'mdo', 'MD05G1203900' => 'mdo', 'MD10G1191100' => 'mdo', 'MD12G1243500' => 'mdo', 'MD13G1207000' => 'mdo', 'MD13G1207100' => 'mdo', 'MD16G1208600' => 'mdo', 'Medtr1g050352' => 'mtr', 'Medtr1g070385' => 'mtr', 'Medtr1g070450' => 'mtr', 'Medtr1g075200' => 'mtr', 'Medtr1g075250' => 'mtr', 'Medtr1g075260' => 'mtr', 'Medtr1g475250' => 'mtr', 'Medtr4g075450' => 'mtr', 'Medtr7g096300' => 'mtr', 'Medtr8g105110' => 'mtr', 'MELO3C006470.2' => 'cme', 'MELO3C006471.2' => 'cme', 'MELO3C020772.2' => 'cme', 'MELO3C026780.2' => 'cme', 'MELO3C026781.2' => 'cme', 'Migut.D00390' => 'egut', 'Migut.G00435' => 'egut', 'Migut.G00436' => 'egut', 'Migut.G00718' => 'egut', 'MSTRG.21891' => 'ama', 'MSTRG.26910' => 'ama', 'MSTRG.4099' => 'ama', 'MSTRG.9925' => 'ama', 'Nitab4.5_0000165g0010' => 'nta', 'Nitab4.5_0000209g0180' => 'nta', 'Nitab4.5_0000244g0440' => 'nta', 'Nitab4.5_0000525g0220' => 'nta', 'Nitab4.5_0001597g0020' => 'nta', 'Nitab4.5_0001878g0040' => 'nta', 'Nitab4.5_0001878g0060' => 'nta', 'Nitab4.5_0002838g0100' => 'nta', 'Nitab4.5_0002838g0120' => 'nta', 'Nitab4.5_0004798g0030' => 'nta', 'Nitab4.5_0005420g0010' => 'nta', 'Nitab4.5_0005507g0010' => 'nta', 'Nitab4.5_0005574g0020' => 'nta', 'Nitab4.5_0005838g0010' => 'nta', 'Nitab4.5_0010580g0020' => 'nta', 'Nn1g02599' => 'nnu', 'Nn1g02608' => 'nnu', 'Nn3g17742' => 'nnu', 'Nn3g19534' => 'nnu', 'Nn3g19535' => 'nnu', 'Oeu008790.1' => 'oeu', 'Oeu008792.1' => 'oeu', 'Oeu032590.1' => 'oeu', 'Oeu035349.1' => 'oeu', 'Oeu049791.1' => 'oeu', 'Os01g0774500' => 'osa', 'Os03g0628800' => 'osa', 'Os03g0798600' => 'osa', 'Os05g0508800' => 'osa', 'Peaxi162Scf00036g02018' => 'pax', 'Peaxi162Scf00578g00032' => 'pax', 'Peaxi162Scf00578g00317' => 'pax', 'Peaxi162Scf00785g00114' => 'pax', 'Peaxi162Scf00813g00119' => 'pax', 'Peaxi162Scf00906g00227' => 'pax', 'PGR004G0875' => 'pgr', 'PGR004G2424' => 'pgr', 'PGR031G1239' => 'pgr', 'PGR031G2474' => 'pgr', 'PGR044G0423' => 'pgr', 'PGSC0003DMG400001128' => 'stu', 'PGSC0003DMG400007336' => 'stu', 'PGSC0003DMG400016318' => 'stu', 'PGSC0003DMG400016319' => 'stu', 'PGSC0003DMG400018074' => 'stu', 'Phvul.001G157700' => 'pvu', 'Phvul.002G148550' => 'pvu', 'Phvul.002G320200' => 'pvu', 'Phvul.003G089200' => 'pvu', 'Phvul.007G126000' => 'pvu', 'Phvul.007G126100' => 'pvu', 'Phvul.007G178000' => 'pvu', 'Phvul.007G178200' => 'pvu', 'Potri.002G043000' => 'ptr', 'Potri.002G043200' => 'ptr', 'Potri.003G123750' => 'ptr', 'Potri.005G055401' => 'ptr', 'Potri.005G219700' => 'ptr', 'Potri.005G220000' => 'ptr', 'Potri.008G161901' => 'ptr', 'Potri.008G162000' => 'ptr', 'Potri.008G162400' => 'ptr', 'Potri.010G076900' => 'ptr', 'Pp3c12_9180' => 'ppa', 'Pp3c13_19770' => 'ppa', 'Pp3c14_22950' => 'ppa', 'Pp3c16_12160' => 'ppa', 'Pp3c27_7820' => 'ppa', 'Pp3c2_3490' => 'ppa', 'Pp3c3_23700' => 'ppa', 'Pp3c3_36520' => 'ppa', 'Pp3c4_15250' => 'ppa', 'PRCOL_00007002' => 'pco', 'Prupe.1G030600' => 'ppe', 'Prupe.1G030700' => 'ppe', 'Prupe.6G345200' => 'ppe', 'Prupe.8G230300' => 'ppe', 'Prupe.8G230500' => 'ppe', 'Psat3g059600' => 'psa', 'Psat5g200920' => 'psa', 'Psat6g056440' => 'psa', 'Psat6g057360' => 'psa', 'Psat6g134120' => 'psa', 'Psat6g134160' => 'psa', 'Psat7g008640' => 'psa', 'Psat7g185240' => 'psa', 'PSO017G1330' => 'pso', 'PSO063G6097' => 'pso', 'PSO170G0835' => 'pso', 'PSO170G2499' => 'pso', 'PSO210G5058' => 'pso', 'PSO210G6154' => 'pso', 'PSO585G0031' => 'pso', 'PSO832G0264' => 'pso', 'PSO832G4288' => 'pso', 'QL03p027355' => 'qlo', 'QL03p027430' => 'qlo', 'QL04p081380' => 'qlo', 'QL06p015642' => 'qlo', 'QL06p015650' => 'qlo', 'QL06p015686' => 'qlo', 'QL12p042927' => 'qlo', 'QL93p1863_0035' => 'qlo', 'RcHm_v2.0_Chr3g0450581' => 'rch', 'RcHm_v2.0_Chr4g0390371' => 'rch', 'RcHm_v2.0_Chr4g0390381' => 'rch', 'RcHm_v2.0_Chr4g0390491' => 'rch', 'RcHm_v2.0_Chr4g0390501' => 'rch', 'RcHm_v2.0_Chr6g0289231' => 'rch', 'Rhsim04G0190400' => 'rsi', 'Rhsim04G0190500' => 'rsi', 'Rhsim04G0190600' => 'rsi', 'Rhsim13G0031400' => 'rsi', 'Rhsim13G0165600' => 'rsi', 'RhsimUnG0114600' => 'rsi', 'RhsimUnG0114700' => 'rsi', 'Sabra02G0034800' => 'sbr', 'Sabra02G0035100' => 'sbr', 'Sabra05G0168600' => 'sbr', 'Sabra05G0168800' => 'sbr', 'Sabra08G0123700' => 'sbr', 'Sabra10G0031900' => 'sbr', 'Sabra13G0039000' => 'sbr', 'SalBow2G0782' => 'sbo', 'SalBow2G1403' => 'sbo', 'SalBow4G0074' => 'sbo', 'SalBow4G2635' => 'sbo', 'SalBow5G3010' => 'sbo', 'Sc05g0000870' => 'sci', 'Sc05g0000890' => 'sci', 'Sc13g0005000' => 'sci', 'Sc13g0005030' => 'sci', 'Sc19g0003790' => 'sci', 'Sc19g0003800' => 'sci', 'Sed0003467' => 'sed', 'Sed0009355' => 'sed', 'Sed0009894' => 'sed', 'Sed0011972' => 'sed', 'Sed0021483' => 'sed', 'Sed0021750' => 'sed', 'Sed0026279' => 'sed', 'SEGI_05312' => 'sgi', 'SEGI_10112' => 'sgi', 'SEGI_15835' => 'sgi', 'SEGI_30386' => 'sgi', 'SEGI_34122' => 'sgi', 'SEGI_35063' => 'sgi', 'SGA_v2.0_scaffold101G29794' => 'sas', 'SGA_v2.0_scaffold1G00573' => 'sas', 'SGA_v2.0_scaffold79G25637' => 'sas', 'SGA_v2.0_scaffold88G27283' => 'sas', 'SGA_v2.0_scaffold88G27285' => 'sas', 'SGA_v2.0_scaffold88G27331' => 'sas', 'SHI09937' => 'shi', 'SMO119G0302' => 'smo', 'SMO137G0231' => 'smo', 'SMO367G1151' => 'smo', 'Solyc02g082000.3' => 'sly', 'Solyc06g031670.3' => 'sly', 'Solyc06g053810.3' => 'sly', 'Solyc07g025457.1' => 'sly', 'Solyc08g059740.1' => 'sly', 'Solyc08g059750.3' => 'sly', 'Solyc09g083370.3' => 'sly', 'Solyc12g038950.3' => 'sly', 'Sopen02g026630' => 'spe', 'Sopen06g018930' => 'spe', 'Sopen06g018940' => 'spe', 'Sopen08g009460' => 'spe', 'Sopen09g032290' => 'spe', 'Sp1g03080' => 'spa', 'Sp1g03090' => 'spa', 'Sp1g05480' => 'spa', 'Sp2g07860' => 'spa', 'Sp2g08430' => 'spa', 'Sp2g08440' => 'spa', 'Sp2g26200' => 'spa', 'Sp4g13170' => 'spa', 'Sp6g33840' => 'spa', 'SpUn1204_0010' => 'spa', 'TAR365G0908' => 'tar', 'TAR381G1270' => 'tar', 'TAR381G1651' => 'tar', 'TAR625G1131' => 'tar', 'TAR633G0962' => 'tar', 'TAR633G1729' => 'tar', 'TAR633G1864' => 'tar', 'TAR636G0221' => 'tar', 'TAR636G0314' => 'tar', 'TAR636G3202' => 'tar', 'THA.LOC104800805' => 'tha', 'THA.LOC104801096' => 'tha', 'THA.LOC104801555' => 'tha', 'THA.LOC104808491' => 'tha', 'THA.LOC104808595' => 'tha', 'THA.LOC104815985' => 'tha', 'THA.LOC104822250' => 'tha', 'THA.LOC104826071' => 'tha', 'Thecc.01G265200' => 'tca', 'Thecc.01G265300' => 'tca', 'Thecc.01G265700' => 'tca', 'Thecc.03G109100' => 'tca', 'Thecc.04G245900' => 'tca', 'Thecc.04G246000' => 'tca', 'Thhalv10003334m.g' => 'esa', 'Thhalv10005508m.g' => 'esa', 'Thhalv10005643m.g' => 'esa', 'Thhalv10007316m.g' => 'esa', 'Thhalv10009006m.g' => 'esa', 'Thhalv10009309m.g' => 'esa', 'Thhalv10014917m.g' => 'esa', 'Thhalv10014919m.g' => 'esa', 'Thhalv10015393m.g' => 'esa', 'Thhalv10016515m.g' => 'esa', 'Thhalv10029242m.g' => 'esa', 'TPR.G16654' => 'tpr', 'TPR.G20589' => 'tpr', 'TPR.G23029' => 'tpr', 'TPR.G27731' => 'tpr', 'TPR.G28889' => 'tpr', 'TPR.G28899' => 'tpr', 'TPR.G30846' => 'tpr', 'TPR.G5452' => 'tpr', 'TPR.G5713' => 'tpr', 'TPR.G9046' => 'tpr', 'TPR.G9061' => 'tpr', 'TWI09G1075' => 'twi', 'TWI12G0806' => 'twi', 'TWI18G0108' => 'twi', 'TWI53G1361' => 'twi', 'TWI73G0185' => 'twi', 'TWI73G0427' => 'twi', 'unitig_37.g12001' => 'ugi', 'unitig_747.g21660' => 'ugi', 'unitig_748.g7232' => 'ugi', 'unitig_748.g7315' => 'ugi', 'unitig_85.g27262' => 'ugi', 'unitig_92.g28220' => 'ugi', 'vmacro02632' => 'vma', 'vmacro08410' => 'vma', 'vmacro08411' => 'vma', 'vmacro15407' => 'vma', 'VMungo0251G3619' => 'vmu', 'VMungo0720G1204' => 'vmu', 'VMungo0720G1918' => 'vmu', 'VMungo0720G2387' => 'vmu', 'VMungo0720G2961' => 'vmu', 'VMungo1215G2154' => 'vmu', 'VMungo1383G2411' => 'vmu', 'Zm00001eb051130' => 'zma', 'Zm00001eb116830' => 'zma', 'Zm00001eb116850' => 'zma', 'Zm00001eb151740' => 'zma', 'Zm00001eb292360' => 'zma', 'Zm00001eb301640' => 'zma' ) $gf_id = 'HOM05D000856' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000856' ) $data_identifier = 'HOM05D000856' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 13, 'ath' => (int) 10, 'atr' => (int) 1, 'acertr' => (int) 8, 'cqu' => (int) 6, 'bca' => (int) 21, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 11, 'car' => (int) 9, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 8, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 5, 'fan' => (int) 16, 'fve' => (int) 6, 'gma' => (int) 11, 'ghi' => (int) 19, 'gra' => (int) 9, 'vvi' => (int) 7, 'han' => (int) 17, 'cav' => (int) 5, 'hma' => (int) 2, 'vpl' => (int) 2, 'sun' => (int) 7, 'lal' => (int) 9, 'lja' => (int) 5, 'lonja' => (int) 9, 'lsa' => (int) 5, 'mes' => (int) 8, 'mpo' => (int) 3, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 10, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 15, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 9, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 9, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 6, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 5, 'spa' => (int) 10, 'tar' => (int) 10, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 11, 'tpr' => (int) 11, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 4, 'vmu' => (int) 7, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb301640' $species_info = array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ) $local_species = 'vma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000856', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p00010' => 'bna', 'A03p04160' => 'bna', 'A03p17160' => 'bna', 'A04p23370' => 'bna', 'A05p14860' => 'bna', 'A08p37020' => 'bna', 'A09p08050' => 'bna', 'A09p66800' => 'bna', 'A09p67940' => 'bna', 'A10p02680' => 'bna', 'A10p05320' => 'bna', 'Aa31LG1G20560' => 'aar', 'Aa31LG1G20610' => 'aar', 'Aa31LG1G7810' => 'aar', 'Aa31LG5G3590' => 'aar', 'Aa31LG5G6140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3819' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4683' => 'aag', 'Actinidia04480' => 'ach', 'Actinidia05466' => 'ach', 'Actinidia08445' => 'ach', 'Actinidia21170' => 'ach', 'Actinidia24812' => 'ach', 'Actinidia24951' => 'ach', 'Actinidia40088' => 'ach', 'Ah.02g111660' => 'amhyb', 'Ah.11g048900' => 'amhyb', 'Ah.11g049910' => 'amhyb', 'AL1G13870' => 'aly', 'AL1G13880' => 'aly', 'AL1G16760' => 'aly', 'AL390U10020' => 'aly', 'AL4G25520' => 'aly', 'AL6G19890' => 'aly', 'AL6G19900' => 'aly', 'AL6G19910' => 'aly', 'AL8G40100' => 'aly', 'Aqoxy2G03562' => 'aox', 'Aqoxy5G00316' => 'aox', 'Aqoxy5G00926' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1628KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1H403S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2FU6SJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.882I6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8YRY2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YN1SN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AF70II' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZA8L1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F916KL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHRD8H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KTZ8QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S22EMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8M29T' => 'arhy', 'AT1G04270' => 'ath', 'AT1G04280' => 'ath', 'AT1G06750' => 'ath', 'AT1G33850' => 'ath', 'AT2G30630' => 'ath', 'AT5G09490' => 'ath', 'AT5G09500' => 'ath', 'AT5G09510' => 'ath', 'AT5G43640' => 'ath', 'AT5G63070' => 'ath', 'ATR0605G315' => 'atr', 'Atru.chr11.175' => 'acertr', 'Atru.chr11.653' => 'acertr', 'Atru.chr3.1616' => 'acertr', 'Atru.chr4.2230' => 'acertr', 'Atru.chr4.2232' => 'acertr', 'Atru.chr5.1598' => 'acertr', 'Atru.chr5.1600' => 'acertr', 'Atru.chr5.2188' => 'acertr', 'AUR62008326' => 'cqu', 'AUR62011922' => 'cqu', 'AUR62011924' => 'cqu', 'AUR62021771' => 'cqu', 'AUR62032237' => 'cqu', 'AUR62032240' => 'cqu', 'BcaB01g05572' => 'bca', 'BcaB02g10337' => 'bca', 'BcaB04g19944' => 'bca', 'BcaB05g21548' => 'bca', 'BcaB05g21549' => 'bca', 'BcaB05g23227' => 'bca', 'BcaB06g26256' => 'bca', 'BcaB06g26257' => 'bca', 'BcaB06g28379' => 'bca', 'BcaC02g11159' => 'bca', 'BcaC03g13258' => 'bca', 'BcaC03g13259' => 'bca', 'BcaC05g24456' => 'bca', 'BcaC05g24457' => 'bca', 'BcaC07g36922' => 'bca', 'BcaC07g36923' => 'bca', 'BcaC07g42050' => 'bca', 'BcaC07g42176' => 'bca', 'BcaC07g42195' => 'bca', 'BcaC07g42196' => 'bca', 'BcaNung06674' => 'bca', 'BolC2t06351H' => 'bol', 'BolC2t06352H' => 'bol', 'BolC3t12993H' => 'bol', 'BolC4t23525H' => 'bol', 'BolC4t27475H' => 'bol', 'BolC5t29025H' => 'bol', 'BolC5t29026H' => 'bol', 'BolC8t46898H' => 'bol', 'BolC8t46899H' => 'bol', 'BolC8t52630H' => 'bol', 'BolC8t52765H' => 'bol', 'BolC9t53824H' => 'bol', 'BraA03t09760Z' => 'bra', 'BraA03t10990Z' => 'bra', 'BraA05t20413Z' => 'bra', 'BraA08t35602Z' => 'bra', 'BraA09t36458Z' => 'bra', 'BraA09t42018Z' => 'bra', 'BraA09t42129Z' => 'bra', 'BraA10t42536Z' => 'bra', 'BraA10t42537Z' => 'bra', 'C01p10690' => 'bna', 'C02p03890' => 'bna', 'C02p03900' => 'bna', 'C03p04620' => 'bna', 'C04p19870' => 'bna', 'C04p59670' => 'bna', 'C05p02460' => 'bna', 'C05p02470' => 'bna', 'C08p00980' => 'bna', 'C08p00990' => 'bna', 'C08p51030' => 'bna', 'C08p52360' => 'bna', 'C09p09120' => 'bna', 'CAN.G19.15' => 'can', 'CAN.G251.10' => 'can', 'CAN.G251.9' => 'can', 'CAN.G398.24' => 'can', 'CAN.G410.32' => 'can', 'CAN.G881.2' => 'can', 'CANSAT01G3025' => 'cansat', 'CANSAT78G1211' => 'cansat', 'CANSAT78G1218' => 'cansat', 'CANSAT78G1521' => 'cansat', 'CANSAT78G1670' => 'cansat', 'CARHR003600' => 'chi', 'CARHR003610' => 'chi', 'CARHR006290' => 'chi', 'CARHR006430' => 'chi', 'CARHR124110' => 'chi', 'CARHR203870' => 'chi', 'CARHR203880' => 'chi', 'CARHR203890' => 'chi', 'CARHR276880' => 'chi', 'Carub.0001s0346' => 'cru', 'Carub.0001s0347' => 'cru', 'Carub.0001s0607' => 'cru', 'Carub.0003s2768' => 'cru', 'Carub.0003s2769' => 'cru', 'Carub.0004s1178' => 'cru', 'Carub.0006s0806' => 'cru', 'Carub.0006s0807' => 'cru', 'Carub.0006s0808' => 'cru', 'Carub.0008s0501' => 'cru', 'Carub.0008s2379' => 'cru', 'Ca_08655_v3' => 'car', 'Ca_08922_v3' => 'car', 'Ca_08923_v3' => 'car', 'Ca_09119_v3' => 'car', 'Ca_09703_v3' => 'car', 'Ca_09705_v3' => 'car', 'Ca_09835_v3' => 'car', 'Ca_26403_v3' => 'car', 'Ca_30719_v3' => 'car', 'CBR_g17958' => 'cbr', 'CBR_g40516' => 'cbr', 'Cc00_g05350' => 'ccan', 'Cc01_g18690' => 'ccan', 'Cc03_g04830' => 'ccan', 'Cc03_g04850' => 'ccan', 'CDE02G4469' => 'cde', 'CDE06G0883' => 'cde', 'CDE06G1295' => 'cde', 'CDE06G1390' => 'cde', 'CDE07G0584' => 'cde', 'CDE07G1084' => 'cde', 'CDE08G1259' => 'cde', 'Cfa002341' => 'cfa', 'Cfa024337' => 'cfa', 'Ciclev10004749m.g' => 'ccl', 'Ciclev10006127m.g' => 'ccl', 'Ciclev10019720m.g' => 'ccl', 'Ciclev10022652m.g' => 'ccl', 'CiPaw.01G190400' => 'cil', 'CiPaw.01G190500' => 'cil', 'CiPaw.02G116400' => 'cil', 'CiPaw.02G116500' => 'cil', 'CiPaw.04G183000' => 'cil', 'CiPaw.04G183300' => 'cil', 'ClCG05G004610' => 'cla', 'ClCG05G004620' => 'cla', 'ClCG06G006730' => 'cla', 'ClCG06G006740' => 'cla', 'ClCG11G003690' => 'cla', 'COL.COLO4_08276' => 'col', 'COL.COLO4_08277' => 'col', 'COL.COLO4_15787' => 'col', 'COL.COLO4_15789' => 'col', 'Cpa.g.c44815' => 'cpa', 'Cpa.g.sc52.144' => 'cpa', 'Cpa.g.sc58.46' => 'cpa', 'Cpa.g.sc58.47' => 'cpa', 'Cre08.g360900' => 'cre', 'CsaV3_2G013030' => 'csa', 'CsaV3_2G013050' => 'csa', 'CsaV3_2G015620' => 'csa', 'CsaV3_3G012590' => 'csa', 'CsaV3_3G012600' => 'csa', 'CSS0001641' => 'camsi', 'CSS0008310' => 'camsi', 'CSS0013011' => 'camsi', 'CSS0017147' => 'camsi', 'CSS0022970' => 'camsi', 'CSS0025655' => 'camsi', 'CSS0028665' => 'camsi', 'CSS0029117' => 'camsi', 'CSS0032024' => 'camsi', 'CSS0039681' => 'camsi', 'CSS0046516' => 'camsi', 'CSS0050307' => 'camsi', 'DCAR_005871' => 'dca', 'DCAR_007342' => 'dca', 'DCAR_024228' => 'dca', 'DCAR_027277' => 'dca', 'DCAR_030718' => 'dca', 'Dinv20287' => 'din', 'Dinv22461' => 'din', 'Dinv22464' => 'din', 'Dinv29912' => 'din', 'Dinv29913' => 'din', 'Dinv34580' => 'din', 'Dinv34582' => 'din', 'Dinv44632' => 'din', 'Duzib052G0266' => 'dzi', 'Duzib133G0907' => 'dzi', 'Duzib133G1034' => 'dzi', 'Duzib138G0207' => 'dzi', 'Duzib138G0491' => 'dzi', 'Duzib151G0812' => 'dzi', 'Duzib151G1166' => 'dzi', 'Duzib168G0192' => 'dzi', 'Duzib211G0077' => 'dzi', 'Duzib212G0429' => 'dzi', 'Duzib212G0472' => 'dzi', 'ECA233G2617' => 'eca', 'ECA236G4188' => 'eca', 'ECA240G0936' => 'eca', 'ECA240G1129' => 'eca', 'ECA247G0623' => 'eca', 'EL10Ac5g10451' => 'bvu', 'EL10Ac5g10453' => 'bvu', 'EL10Ac5g10894' => 'bvu', 'Eucgr.H00192' => 'egr', 'Eucgr.H00193' => 'egr', 'Eucgr.H00194' => 'egr', 'Eucgr.J01562' => 'egr', 'Eucgr.K03301' => 'egr', 'FAN02G0632' => 'fan', 'FAN05G5378' => 'fan', 'FAN09G3247' => 'fan', 'FAN12G0435' => 'fan', 'FAN12G2426' => 'fan', 'FAN14G1707' => 'fan', 'FAN14G4725' => 'fan', 'FAN15G2071' => 'fan', 'FAN17G3065' => 'fan', 'FAN19G1376' => 'fan', 'FAN20G0354' => 'fan', 'FAN20G2429' => 'fan', 'FAN20G2658' => 'fan', 'FAN24G2343' => 'fan', 'FAN27G2362' => 'fan', 'FAN28G1765' => 'fan', 'FvH4_1g16020' => 'fve', 'FvH4_2g04890' => 'fve', 'FvH4_2g22270' => 'fve', 'FvH4_4g02630' => 'fve', 'FvH4_4g02640' => 'fve', 'FvH4_6g02650' => 'fve', 'Glyma.02G140600' => 'gma', 'Glyma.03G159900' => 'gma', 'Glyma.05G234800' => 'gma', 'Glyma.07G269600' => 'gma', 'Glyma.08G042300' => 'gma', 'Glyma.10G033500' => 'gma', 'Glyma.10G185200' => 'gma', 'Glyma.17G004300' => 'gma', 'Glyma.19G161900' => 'gma', 'Glyma.20G205100' => 'gma', 'Glyma.20G205200' => 'gma', 'Gohir.A01G139101' => 'ghi', 'Gohir.A02G035600' => 'ghi', 'Gohir.A02G117901' => 'ghi', 'Gohir.A07G210100' => 'ghi', 'Gohir.A07G210200' => 'ghi', 'Gohir.A08G061100' => 'ghi', 'Gohir.A09G223000' => 'ghi', 'Gohir.A09G223100' => 'ghi', 'Gohir.A10G113900' => 'ghi', 'Gohir.A10G114000' => 'ghi', 'Gohir.D02G042300' => 'ghi', 'Gohir.D07G216100' => 'ghi', 'Gohir.D07G216200' => 'ghi', 'Gohir.D08G070400' => 'ghi', 'Gohir.D09G225000' => 'ghi', 'Gohir.D09G225100' => 'ghi', 'Gohir.D10G152300' => 'ghi', 'Gohir.D10G153200' => 'ghi', 'Gohir.D11G133701' => 'ghi', 'Gorai.004G074100' => 'gra', 'Gorai.005G046800' => 'gra', 'Gorai.006G246500' => 'gra', 'Gorai.006G246600' => 'gra', 'Gorai.007G142900' => 'gra', 'Gorai.011G171000' => 'gra', 'Gorai.011G171100' => 'gra', 'Gorai.013G104300' => 'gra', 'Gorai.013G104400' => 'gra', 'GSVIVG01000754001' => 'vvi', 'GSVIVG01000756001' => 'vvi', 'GSVIVG01010903001' => 'vvi', 'GSVIVG01017623001' => 'vvi', 'GSVIVG01018113001' => 'vvi', 'GSVIVG01018116001' => 'vvi', 'GSVIVG01018118001' => 'vvi', 'HanXRQChr03g0076211' => 'han', 'HanXRQChr03g0092431' => 'han', 'HanXRQChr03g0092441' => 'han', 'HanXRQChr03g0092591' => 'han', 'HanXRQChr03g0092671' => 'han', 'HanXRQChr03g0092681' => 'han', 'HanXRQChr03g0092691' => 'han', 'HanXRQChr03g0092701' => 'han', 'HanXRQChr03g0092721' => 'han', 'HanXRQChr03g0092731' => 'han', 'HanXRQChr04g0113681' => 'han', 'HanXRQChr10g0281371' => 'han', 'HanXRQChr11g0337141' => 'han', 'HanXRQChr13g0424521' => 'han', 'HanXRQChr13g0424531' => 'han', 'HanXRQChr13g0424541' => 'han', 'HanXRQChr16g0498221' => 'han', 'Haze_04377' => 'cav', 'Haze_11298' => 'cav', 'Haze_24547' => 'cav', 'Haze_24550' => 'cav', 'Haze_26587' => 'cav', 'Hma1.2p1_0650F.1_g195410' => 'hma', 'Hma1.2p1_0893F.1_g233470' => 'hma', 'HPP92_006508' => 'vpl', 'HPP92_024780' => 'vpl', 'Hund02688' => 'sun', 'Hund09380' => 'sun', 'Hund09381' => 'sun', 'Hund09832' => 'sun', 'Hund09833' => 'sun', 'Hund11351' => 'sun', 'Hund11513' => 'sun', 'Lalb_Chr06g0162591' => 'lal', 'Lalb_Chr06g0162601' => 'lal', 'Lalb_Chr06g0169321' => 'lal', 'Lalb_Chr09g0330951' => 'lal', 'Lalb_Chr16g0387631' => 'lal', 'Lalb_Chr21g0306241' => 'lal', 'Lalb_Chr25g0290051' => 'lal', 'Lalb_Chr25g0290061' => 'lal', 'Lalb_Chr25g0290071' => 'lal', 'Lj1g0003876' => 'lja', 'Lj1P1207T36' => 'lonja', 'Lj2C1156G12' => 'lonja', 'Lj3A793G39' => 'lonja', 'Lj3C580G2' => 'lonja', 'Lj3C780G2' => 'lonja', 'Lj3C780T4' => 'lonja', 'Lj3C793G9' => 'lonja', 'Lj4g0012960' => 'lja', 'Lj5g0021252' => 'lja', 'Lj5g0021484' => 'lja', 'Lj5g0024528' => 'lja', 'Lj6A399T12' => 'lonja', 'Lj6A656G65' => 'lonja', 'Lsat_1_v5_gn_3_125500' => 'lsa', 'Lsat_1_v5_gn_3_125540' => 'lsa', 'Lsat_1_v5_gn_5_72701' => 'lsa', 'Lsat_1_v5_gn_8_91560' => 'lsa', 'Lsat_1_v5_gn_9_9640' => 'lsa', 'Manes.01G200600' => 'mes', 'Manes.01G200700' => 'mes', 'Manes.03G168900' => 'mes', 'Manes.03G169000' => 'mes', 'Manes.05G085801' => 'mes', 'Manes.05G086200' => 'mes', 'Manes.15G036700' => 'mes', 'Manes.15G036900' => 'mes', 'Mapoly0004s0172' => 'mpo', 'Mapoly0023s0001' => 'mpo', 'Mapoly0142s0012' => 'mpo', 'MBI01_g32854_MAGBIO' => 'mbi', 'MBI11_g24427_MAGBIO' => 'mbi', 'MBI11_g47319_MAGBIO' => 'mbi', 'MCO01G433' => 'mco', 'MD00G1187800' => 'mdo', 'MD04G1226500' => 'mdo', 'MD05G1203900' => 'mdo', 'MD10G1191100' => 'mdo', 'MD12G1243500' => 'mdo', 'MD13G1207000' => 'mdo', 'MD13G1207100' => 'mdo', 'MD16G1208600' => 'mdo', 'Medtr1g050352' => 'mtr', 'Medtr1g070385' => 'mtr', 'Medtr1g070450' => 'mtr', 'Medtr1g075200' => 'mtr', 'Medtr1g075250' => 'mtr', 'Medtr1g075260' => 'mtr', 'Medtr1g475250' => 'mtr', 'Medtr4g075450' => 'mtr', 'Medtr7g096300' => 'mtr', 'Medtr8g105110' => 'mtr', 'MELO3C006470.2' => 'cme', 'MELO3C006471.2' => 'cme', 'MELO3C020772.2' => 'cme', 'MELO3C026780.2' => 'cme', 'MELO3C026781.2' => 'cme', 'Migut.D00390' => 'egut', 'Migut.G00435' => 'egut', 'Migut.G00436' => 'egut', 'Migut.G00718' => 'egut', 'MSTRG.21891' => 'ama', 'MSTRG.26910' => 'ama', 'MSTRG.4099' => 'ama', 'MSTRG.9925' => 'ama', 'Nitab4.5_0000165g0010' => 'nta', 'Nitab4.5_0000209g0180' => 'nta', 'Nitab4.5_0000244g0440' => 'nta', 'Nitab4.5_0000525g0220' => 'nta', 'Nitab4.5_0001597g0020' => 'nta', 'Nitab4.5_0001878g0040' => 'nta', 'Nitab4.5_0001878g0060' => 'nta', 'Nitab4.5_0002838g0100' => 'nta', 'Nitab4.5_0002838g0120' => 'nta', 'Nitab4.5_0004798g0030' => 'nta', 'Nitab4.5_0005420g0010' => 'nta', 'Nitab4.5_0005507g0010' => 'nta', 'Nitab4.5_0005574g0020' => 'nta', 'Nitab4.5_0005838g0010' => 'nta', 'Nitab4.5_0010580g0020' => 'nta', 'Nn1g02599' => 'nnu', 'Nn1g02608' => 'nnu', 'Nn3g17742' => 'nnu', 'Nn3g19534' => 'nnu', 'Nn3g19535' => 'nnu', 'Oeu008790.1' => 'oeu', 'Oeu008792.1' => 'oeu', 'Oeu032590.1' => 'oeu', 'Oeu035349.1' => 'oeu', 'Oeu049791.1' => 'oeu', 'Os01g0774500' => 'osa', 'Os03g0628800' => 'osa', 'Os03g0798600' => 'osa', 'Os05g0508800' => 'osa', 'Peaxi162Scf00036g02018' => 'pax', 'Peaxi162Scf00578g00032' => 'pax', 'Peaxi162Scf00578g00317' => 'pax', 'Peaxi162Scf00785g00114' => 'pax', 'Peaxi162Scf00813g00119' => 'pax', 'Peaxi162Scf00906g00227' => 'pax', 'PGR004G0875' => 'pgr', 'PGR004G2424' => 'pgr', 'PGR031G1239' => 'pgr', 'PGR031G2474' => 'pgr', 'PGR044G0423' => 'pgr', 'PGSC0003DMG400001128' => 'stu', 'PGSC0003DMG400007336' => 'stu', 'PGSC0003DMG400016318' => 'stu', 'PGSC0003DMG400016319' => 'stu', 'PGSC0003DMG400018074' => 'stu', 'Phvul.001G157700' => 'pvu', 'Phvul.002G148550' => 'pvu', 'Phvul.002G320200' => 'pvu', 'Phvul.003G089200' => 'pvu', 'Phvul.007G126000' => 'pvu', 'Phvul.007G126100' => 'pvu', 'Phvul.007G178000' => 'pvu', 'Phvul.007G178200' => 'pvu', 'Potri.002G043000' => 'ptr', 'Potri.002G043200' => 'ptr', 'Potri.003G123750' => 'ptr', 'Potri.005G055401' => 'ptr', 'Potri.005G219700' => 'ptr', 'Potri.005G220000' => 'ptr', 'Potri.008G161901' => 'ptr', 'Potri.008G162000' => 'ptr', 'Potri.008G162400' => 'ptr', 'Potri.010G076900' => 'ptr', 'Pp3c12_9180' => 'ppa', 'Pp3c13_19770' => 'ppa', 'Pp3c14_22950' => 'ppa', 'Pp3c16_12160' => 'ppa', 'Pp3c27_7820' => 'ppa', 'Pp3c2_3490' => 'ppa', 'Pp3c3_23700' => 'ppa', 'Pp3c3_36520' => 'ppa', 'Pp3c4_15250' => 'ppa', 'PRCOL_00007002' => 'pco', 'Prupe.1G030600' => 'ppe', 'Prupe.1G030700' => 'ppe', 'Prupe.6G345200' => 'ppe', 'Prupe.8G230300' => 'ppe', 'Prupe.8G230500' => 'ppe', 'Psat3g059600' => 'psa', 'Psat5g200920' => 'psa', 'Psat6g056440' => 'psa', 'Psat6g057360' => 'psa', 'Psat6g134120' => 'psa', 'Psat6g134160' => 'psa', 'Psat7g008640' => 'psa', 'Psat7g185240' => 'psa', 'PSO017G1330' => 'pso', 'PSO063G6097' => 'pso', 'PSO170G0835' => 'pso', 'PSO170G2499' => 'pso', 'PSO210G5058' => 'pso', 'PSO210G6154' => 'pso', 'PSO585G0031' => 'pso', 'PSO832G0264' => 'pso', 'PSO832G4288' => 'pso', 'QL03p027355' => 'qlo', 'QL03p027430' => 'qlo', 'QL04p081380' => 'qlo', 'QL06p015642' => 'qlo', 'QL06p015650' => 'qlo', 'QL06p015686' => 'qlo', 'QL12p042927' => 'qlo', 'QL93p1863_0035' => 'qlo', 'RcHm_v2.0_Chr3g0450581' => 'rch', 'RcHm_v2.0_Chr4g0390371' => 'rch', 'RcHm_v2.0_Chr4g0390381' => 'rch', 'RcHm_v2.0_Chr4g0390491' => 'rch', 'RcHm_v2.0_Chr4g0390501' => 'rch', 'RcHm_v2.0_Chr6g0289231' => 'rch', 'Rhsim04G0190400' => 'rsi', 'Rhsim04G0190500' => 'rsi', 'Rhsim04G0190600' => 'rsi', 'Rhsim13G0031400' => 'rsi', 'Rhsim13G0165600' => 'rsi', 'RhsimUnG0114600' => 'rsi', 'RhsimUnG0114700' => 'rsi', 'Sabra02G0034800' => 'sbr', 'Sabra02G0035100' => 'sbr', 'Sabra05G0168600' => 'sbr', 'Sabra05G0168800' => 'sbr', 'Sabra08G0123700' => 'sbr', 'Sabra10G0031900' => 'sbr', 'Sabra13G0039000' => 'sbr', 'SalBow2G0782' => 'sbo', 'SalBow2G1403' => 'sbo', 'SalBow4G0074' => 'sbo', 'SalBow4G2635' => 'sbo', 'SalBow5G3010' => 'sbo', 'Sc05g0000870' => 'sci', 'Sc05g0000890' => 'sci', 'Sc13g0005000' => 'sci', 'Sc13g0005030' => 'sci', 'Sc19g0003790' => 'sci', 'Sc19g0003800' => 'sci', 'Sed0003467' => 'sed', 'Sed0009355' => 'sed', 'Sed0009894' => 'sed', 'Sed0011972' => 'sed', 'Sed0021483' => 'sed', 'Sed0021750' => 'sed', 'Sed0026279' => 'sed', 'SEGI_05312' => 'sgi', 'SEGI_10112' => 'sgi', 'SEGI_15835' => 'sgi', 'SEGI_30386' => 'sgi', 'SEGI_34122' => 'sgi', 'SEGI_35063' => 'sgi', 'SGA_v2.0_scaffold101G29794' => 'sas', 'SGA_v2.0_scaffold1G00573' => 'sas', 'SGA_v2.0_scaffold79G25637' => 'sas', 'SGA_v2.0_scaffold88G27283' => 'sas', 'SGA_v2.0_scaffold88G27285' => 'sas', 'SGA_v2.0_scaffold88G27331' => 'sas', 'SHI09937' => 'shi', 'SMO119G0302' => 'smo', 'SMO137G0231' => 'smo', 'SMO367G1151' => 'smo', 'Solyc02g082000.3' => 'sly', 'Solyc06g031670.3' => 'sly', 'Solyc06g053810.3' => 'sly', 'Solyc07g025457.1' => 'sly', 'Solyc08g059740.1' => 'sly', 'Solyc08g059750.3' => 'sly', 'Solyc09g083370.3' => 'sly', 'Solyc12g038950.3' => 'sly', 'Sopen02g026630' => 'spe', 'Sopen06g018930' => 'spe', 'Sopen06g018940' => 'spe', 'Sopen08g009460' => 'spe', 'Sopen09g032290' => 'spe', 'Sp1g03080' => 'spa', 'Sp1g03090' => 'spa', 'Sp1g05480' => 'spa', 'Sp2g07860' => 'spa', 'Sp2g08430' => 'spa', 'Sp2g08440' => 'spa', 'Sp2g26200' => 'spa', 'Sp4g13170' => 'spa', 'Sp6g33840' => 'spa', 'SpUn1204_0010' => 'spa', 'TAR365G0908' => 'tar', 'TAR381G1270' => 'tar', 'TAR381G1651' => 'tar', 'TAR625G1131' => 'tar', 'TAR633G0962' => 'tar', 'TAR633G1729' => 'tar', 'TAR633G1864' => 'tar', 'TAR636G0221' => 'tar', 'TAR636G0314' => 'tar', 'TAR636G3202' => 'tar', 'THA.LOC104800805' => 'tha', 'THA.LOC104801096' => 'tha', 'THA.LOC104801555' => 'tha', 'THA.LOC104808491' => 'tha', 'THA.LOC104808595' => 'tha', 'THA.LOC104815985' => 'tha', 'THA.LOC104822250' => 'tha', 'THA.LOC104826071' => 'tha', 'Thecc.01G265200' => 'tca', 'Thecc.01G265300' => 'tca', 'Thecc.01G265700' => 'tca', 'Thecc.03G109100' => 'tca', 'Thecc.04G245900' => 'tca', 'Thecc.04G246000' => 'tca', 'Thhalv10003334m.g' => 'esa', 'Thhalv10005508m.g' => 'esa', 'Thhalv10005643m.g' => 'esa', 'Thhalv10007316m.g' => 'esa', 'Thhalv10009006m.g' => 'esa', 'Thhalv10009309m.g' => 'esa', 'Thhalv10014917m.g' => 'esa', 'Thhalv10014919m.g' => 'esa', 'Thhalv10015393m.g' => 'esa', 'Thhalv10016515m.g' => 'esa', 'Thhalv10029242m.g' => 'esa', 'TPR.G16654' => 'tpr', 'TPR.G20589' => 'tpr', 'TPR.G23029' => 'tpr', 'TPR.G27731' => 'tpr', 'TPR.G28889' => 'tpr', 'TPR.G28899' => 'tpr', 'TPR.G30846' => 'tpr', 'TPR.G5452' => 'tpr', 'TPR.G5713' => 'tpr', 'TPR.G9046' => 'tpr', 'TPR.G9061' => 'tpr', 'TWI09G1075' => 'twi', 'TWI12G0806' => 'twi', 'TWI18G0108' => 'twi', 'TWI53G1361' => 'twi', 'TWI73G0185' => 'twi', 'TWI73G0427' => 'twi', 'unitig_37.g12001' => 'ugi', 'unitig_747.g21660' => 'ugi', 'unitig_748.g7232' => 'ugi', 'unitig_748.g7315' => 'ugi', 'unitig_85.g27262' => 'ugi', 'unitig_92.g28220' => 'ugi', 'vmacro02632' => 'vma', 'vmacro08410' => 'vma', 'vmacro08411' => 'vma', 'vmacro15407' => 'vma', 'VMungo0251G3619' => 'vmu', 'VMungo0720G1204' => 'vmu', 'VMungo0720G1918' => 'vmu', 'VMungo0720G2387' => 'vmu', 'VMungo0720G2961' => 'vmu', 'VMungo1215G2154' => 'vmu', 'VMungo1383G2411' => 'vmu', 'Zm00001eb051130' => 'zma', 'Zm00001eb116830' => 'zma', 'Zm00001eb116850' => 'zma', 'Zm00001eb151740' => 'zma', 'Zm00001eb292360' => 'zma', 'Zm00001eb301640' => 'zma' ), 'gf_id' => 'HOM05D000856', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000856' ), 'data_identifier' => 'HOM05D000856', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000856', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p00010' => 'bna', 'A03p04160' => 'bna', 'A03p17160' => 'bna', 'A04p23370' => 'bna', 'A05p14860' => 'bna', 'A08p37020' => 'bna', 'A09p08050' => 'bna', 'A09p66800' => 'bna', 'A09p67940' => 'bna', 'A10p02680' => 'bna', 'A10p05320' => 'bna', 'Aa31LG1G20560' => 'aar', 'Aa31LG1G20610' => 'aar', 'Aa31LG1G7810' => 'aar', 'Aa31LG5G3590' => 'aar', 'Aa31LG5G6140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3819' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4683' => 'aag', 'Actinidia04480' => 'ach', 'Actinidia05466' => 'ach', 'Actinidia08445' => 'ach', 'Actinidia21170' => 'ach', 'Actinidia24812' => 'ach', 'Actinidia24951' => 'ach', 'Actinidia40088' => 'ach', 'Ah.02g111660' => 'amhyb', 'Ah.11g048900' => 'amhyb', 'Ah.11g049910' => 'amhyb', 'AL1G13870' => 'aly', 'AL1G13880' => 'aly', 'AL1G16760' => 'aly', 'AL390U10020' => 'aly', 'AL4G25520' => 'aly', 'AL6G19890' => 'aly', 'AL6G19900' => 'aly', 'AL6G19910' => 'aly', 'AL8G40100' => 'aly', 'Aqoxy2G03562' => 'aox', 'Aqoxy5G00316' => 'aox', 'Aqoxy5G00926' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1628KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1H403S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2FU6SJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.882I6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8YRY2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YN1SN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AF70II' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZA8L1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F916KL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHRD8H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KTZ8QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S22EMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8M29T' => 'arhy', 'AT1G04270' => 'ath', 'AT1G04280' => 'ath', 'AT1G06750' => 'ath', 'AT1G33850' => 'ath', 'AT2G30630' => 'ath', 'AT5G09490' => 'ath', 'AT5G09500' => 'ath', 'AT5G09510' => 'ath', 'AT5G43640' => 'ath', 'AT5G63070' => 'ath', 'ATR0605G315' => 'atr', 'Atru.chr11.175' => 'acertr', 'Atru.chr11.653' => 'acertr', 'Atru.chr3.1616' => 'acertr', 'Atru.chr4.2230' => 'acertr', 'Atru.chr4.2232' => 'acertr', 'Atru.chr5.1598' => 'acertr', 'Atru.chr5.1600' => 'acertr', 'Atru.chr5.2188' => 'acertr', 'AUR62008326' => 'cqu', 'AUR62011922' => 'cqu', 'AUR62011924' => 'cqu', 'AUR62021771' => 'cqu', 'AUR62032237' => 'cqu', 'AUR62032240' => 'cqu', 'BcaB01g05572' => 'bca', 'BcaB02g10337' => 'bca', 'BcaB04g19944' => 'bca', 'BcaB05g21548' => 'bca', 'BcaB05g21549' => 'bca', 'BcaB05g23227' => 'bca', 'BcaB06g26256' => 'bca', 'BcaB06g26257' => 'bca', 'BcaB06g28379' => 'bca', 'BcaC02g11159' => 'bca', 'BcaC03g13258' => 'bca', 'BcaC03g13259' => 'bca', 'BcaC05g24456' => 'bca', 'BcaC05g24457' => 'bca', 'BcaC07g36922' => 'bca', 'BcaC07g36923' => 'bca', 'BcaC07g42050' => 'bca', 'BcaC07g42176' => 'bca', 'BcaC07g42195' => 'bca', 'BcaC07g42196' => 'bca', 'BcaNung06674' => 'bca', 'BolC2t06351H' => 'bol', 'BolC2t06352H' => 'bol', 'BolC3t12993H' => 'bol', 'BolC4t23525H' => 'bol', 'BolC4t27475H' => 'bol', 'BolC5t29025H' => 'bol', 'BolC5t29026H' => 'bol', 'BolC8t46898H' => 'bol', 'BolC8t46899H' => 'bol', 'BolC8t52630H' => 'bol', 'BolC8t52765H' => 'bol', 'BolC9t53824H' => 'bol', 'BraA03t09760Z' => 'bra', 'BraA03t10990Z' => 'bra', 'BraA05t20413Z' => 'bra', 'BraA08t35602Z' => 'bra', 'BraA09t36458Z' => 'bra', 'BraA09t42018Z' => 'bra', 'BraA09t42129Z' => 'bra', 'BraA10t42536Z' => 'bra', 'BraA10t42537Z' => 'bra', 'C01p10690' => 'bna', 'C02p03890' => 'bna', 'C02p03900' => 'bna', 'C03p04620' => 'bna', 'C04p19870' => 'bna', 'C04p59670' => 'bna', 'C05p02460' => 'bna', 'C05p02470' => 'bna', 'C08p00980' => 'bna', 'C08p00990' => 'bna', 'C08p51030' => 'bna', 'C08p52360' => 'bna', 'C09p09120' => 'bna', 'CAN.G19.15' => 'can', 'CAN.G251.10' => 'can', 'CAN.G251.9' => 'can', 'CAN.G398.24' => 'can', 'CAN.G410.32' => 'can', 'CAN.G881.2' => 'can', 'CANSAT01G3025' => 'cansat', 'CANSAT78G1211' => 'cansat', 'CANSAT78G1218' => 'cansat', 'CANSAT78G1521' => 'cansat', 'CANSAT78G1670' => 'cansat', 'CARHR003600' => 'chi', 'CARHR003610' => 'chi', 'CARHR006290' => 'chi', 'CARHR006430' => 'chi', 'CARHR124110' => 'chi', 'CARHR203870' => 'chi', 'CARHR203880' => 'chi', 'CARHR203890' => 'chi', 'CARHR276880' => 'chi', 'Carub.0001s0346' => 'cru', 'Carub.0001s0347' => 'cru', 'Carub.0001s0607' => 'cru', 'Carub.0003s2768' => 'cru', 'Carub.0003s2769' => 'cru', 'Carub.0004s1178' => 'cru', 'Carub.0006s0806' => 'cru', 'Carub.0006s0807' => 'cru', 'Carub.0006s0808' => 'cru', 'Carub.0008s0501' => 'cru', 'Carub.0008s2379' => 'cru', 'Ca_08655_v3' => 'car', 'Ca_08922_v3' => 'car', 'Ca_08923_v3' => 'car', 'Ca_09119_v3' => 'car', 'Ca_09703_v3' => 'car', 'Ca_09705_v3' => 'car', 'Ca_09835_v3' => 'car', 'Ca_26403_v3' => 'car', 'Ca_30719_v3' => 'car', 'CBR_g17958' => 'cbr', 'CBR_g40516' => 'cbr', 'Cc00_g05350' => 'ccan', 'Cc01_g18690' => 'ccan', 'Cc03_g04830' => 'ccan', 'Cc03_g04850' => 'ccan', 'CDE02G4469' => 'cde', 'CDE06G0883' => 'cde', 'CDE06G1295' => 'cde', 'CDE06G1390' => 'cde', 'CDE07G0584' => 'cde', 'CDE07G1084' => 'cde', 'CDE08G1259' => 'cde', 'Cfa002341' => 'cfa', 'Cfa024337' => 'cfa', 'Ciclev10004749m.g' => 'ccl', 'Ciclev10006127m.g' => 'ccl', 'Ciclev10019720m.g' => 'ccl', 'Ciclev10022652m.g' => 'ccl', 'CiPaw.01G190400' => 'cil', 'CiPaw.01G190500' => 'cil', 'CiPaw.02G116400' => 'cil', 'CiPaw.02G116500' => 'cil', 'CiPaw.04G183000' => 'cil', 'CiPaw.04G183300' => 'cil', 'ClCG05G004610' => 'cla', 'ClCG05G004620' => 'cla', 'ClCG06G006730' => 'cla', 'ClCG06G006740' => 'cla', 'ClCG11G003690' => 'cla', 'COL.COLO4_08276' => 'col', 'COL.COLO4_08277' => 'col', 'COL.COLO4_15787' => 'col', 'COL.COLO4_15789' => 'col', 'Cpa.g.c44815' => 'cpa', 'Cpa.g.sc52.144' => 'cpa', 'Cpa.g.sc58.46' => 'cpa', 'Cpa.g.sc58.47' => 'cpa', 'Cre08.g360900' => 'cre', 'CsaV3_2G013030' => 'csa', 'CsaV3_2G013050' => 'csa', 'CsaV3_2G015620' => 'csa', 'CsaV3_3G012590' => 'csa', 'CsaV3_3G012600' => 'csa', 'CSS0001641' => 'camsi', 'CSS0008310' => 'camsi', 'CSS0013011' => 'camsi', 'CSS0017147' => 'camsi', 'CSS0022970' => 'camsi', 'CSS0025655' => 'camsi', 'CSS0028665' => 'camsi', 'CSS0029117' => 'camsi', 'CSS0032024' => 'camsi', 'CSS0039681' => 'camsi', 'CSS0046516' => 'camsi', 'CSS0050307' => 'camsi', 'DCAR_005871' => 'dca', 'DCAR_007342' => 'dca', 'DCAR_024228' => 'dca', 'DCAR_027277' => 'dca', 'DCAR_030718' => 'dca', 'Dinv20287' => 'din', 'Dinv22461' => 'din', 'Dinv22464' => 'din', 'Dinv29912' => 'din', 'Dinv29913' => 'din', 'Dinv34580' => 'din', 'Dinv34582' => 'din', 'Dinv44632' => 'din', 'Duzib052G0266' => 'dzi', 'Duzib133G0907' => 'dzi', 'Duzib133G1034' => 'dzi', 'Duzib138G0207' => 'dzi', 'Duzib138G0491' => 'dzi', 'Duzib151G0812' => 'dzi', 'Duzib151G1166' => 'dzi', 'Duzib168G0192' => 'dzi', 'Duzib211G0077' => 'dzi', 'Duzib212G0429' => 'dzi', 'Duzib212G0472' => 'dzi', 'ECA233G2617' => 'eca', 'ECA236G4188' => 'eca', 'ECA240G0936' => 'eca', 'ECA240G1129' => 'eca', 'ECA247G0623' => 'eca', 'EL10Ac5g10451' => 'bvu', 'EL10Ac5g10453' => 'bvu', 'EL10Ac5g10894' => 'bvu', 'Eucgr.H00192' => 'egr', 'Eucgr.H00193' => 'egr', 'Eucgr.H00194' => 'egr', 'Eucgr.J01562' => 'egr', 'Eucgr.K03301' => 'egr', 'FAN02G0632' => 'fan', 'FAN05G5378' => 'fan', 'FAN09G3247' => 'fan', 'FAN12G0435' => 'fan', 'FAN12G2426' => 'fan', 'FAN14G1707' => 'fan', 'FAN14G4725' => 'fan', 'FAN15G2071' => 'fan', 'FAN17G3065' => 'fan', 'FAN19G1376' => 'fan', 'FAN20G0354' => 'fan', 'FAN20G2429' => 'fan', 'FAN20G2658' => 'fan', 'FAN24G2343' => 'fan', 'FAN27G2362' => 'fan', 'FAN28G1765' => 'fan', 'FvH4_1g16020' => 'fve', 'FvH4_2g04890' => 'fve', 'FvH4_2g22270' => 'fve', 'FvH4_4g02630' => 'fve', 'FvH4_4g02640' => 'fve', 'FvH4_6g02650' => 'fve', 'Glyma.02G140600' => 'gma', 'Glyma.03G159900' => 'gma', 'Glyma.05G234800' => 'gma', 'Glyma.07G269600' => 'gma', 'Glyma.08G042300' => 'gma', 'Glyma.10G033500' => 'gma', 'Glyma.10G185200' => 'gma', 'Glyma.17G004300' => 'gma', 'Glyma.19G161900' => 'gma', 'Glyma.20G205100' => 'gma', 'Glyma.20G205200' => 'gma', 'Gohir.A01G139101' => 'ghi', 'Gohir.A02G035600' => 'ghi', 'Gohir.A02G117901' => 'ghi', 'Gohir.A07G210100' => 'ghi', 'Gohir.A07G210200' => 'ghi', 'Gohir.A08G061100' => 'ghi', 'Gohir.A09G223000' => 'ghi', 'Gohir.A09G223100' => 'ghi', 'Gohir.A10G113900' => 'ghi', 'Gohir.A10G114000' => 'ghi', 'Gohir.D02G042300' => 'ghi', 'Gohir.D07G216100' => 'ghi', 'Gohir.D07G216200' => 'ghi', 'Gohir.D08G070400' => 'ghi', 'Gohir.D09G225000' => 'ghi', 'Gohir.D09G225100' => 'ghi', 'Gohir.D10G152300' => 'ghi', 'Gohir.D10G153200' => 'ghi', 'Gohir.D11G133701' => 'ghi', 'Gorai.004G074100' => 'gra', 'Gorai.005G046800' => 'gra', 'Gorai.006G246500' => 'gra', 'Gorai.006G246600' => 'gra', 'Gorai.007G142900' => 'gra', 'Gorai.011G171000' => 'gra', 'Gorai.011G171100' => 'gra', 'Gorai.013G104300' => 'gra', 'Gorai.013G104400' => 'gra', 'GSVIVG01000754001' => 'vvi', 'GSVIVG01000756001' => 'vvi', 'GSVIVG01010903001' => 'vvi', 'GSVIVG01017623001' => 'vvi', 'GSVIVG01018113001' => 'vvi', 'GSVIVG01018116001' => 'vvi', 'GSVIVG01018118001' => 'vvi', 'HanXRQChr03g0076211' => 'han', 'HanXRQChr03g0092431' => 'han', 'HanXRQChr03g0092441' => 'han', 'HanXRQChr03g0092591' => 'han', 'HanXRQChr03g0092671' => 'han', 'HanXRQChr03g0092681' => 'han', 'HanXRQChr03g0092691' => 'han', 'HanXRQChr03g0092701' => 'han', 'HanXRQChr03g0092721' => 'han', 'HanXRQChr03g0092731' => 'han', 'HanXRQChr04g0113681' => 'han', 'HanXRQChr10g0281371' => 'han', 'HanXRQChr11g0337141' => 'han', 'HanXRQChr13g0424521' => 'han', 'HanXRQChr13g0424531' => 'han', 'HanXRQChr13g0424541' => 'han', 'HanXRQChr16g0498221' => 'han', 'Haze_04377' => 'cav', 'Haze_11298' => 'cav', 'Haze_24547' => 'cav', 'Haze_24550' => 'cav', 'Haze_26587' => 'cav', 'Hma1.2p1_0650F.1_g195410' => 'hma', 'Hma1.2p1_0893F.1_g233470' => 'hma', 'HPP92_006508' => 'vpl', 'HPP92_024780' => 'vpl', 'Hund02688' => 'sun', 'Hund09380' => 'sun', 'Hund09381' => 'sun', 'Hund09832' => 'sun', 'Hund09833' => 'sun', 'Hund11351' => 'sun', 'Hund11513' => 'sun', 'Lalb_Chr06g0162591' => 'lal', 'Lalb_Chr06g0162601' => 'lal', 'Lalb_Chr06g0169321' => 'lal', 'Lalb_Chr09g0330951' => 'lal', 'Lalb_Chr16g0387631' => 'lal', 'Lalb_Chr21g0306241' => 'lal', 'Lalb_Chr25g0290051' => 'lal', 'Lalb_Chr25g0290061' => 'lal', 'Lalb_Chr25g0290071' => 'lal', 'Lj1g0003876' => 'lja', 'Lj1P1207T36' => 'lonja', 'Lj2C1156G12' => 'lonja', 'Lj3A793G39' => 'lonja', 'Lj3C580G2' => 'lonja', 'Lj3C780G2' => 'lonja', 'Lj3C780T4' => 'lonja', 'Lj3C793G9' => 'lonja', 'Lj4g0012960' => 'lja', 'Lj5g0021252' => 'lja', 'Lj5g0021484' => 'lja', 'Lj5g0024528' => 'lja', 'Lj6A399T12' => 'lonja', 'Lj6A656G65' => 'lonja', 'Lsat_1_v5_gn_3_125500' => 'lsa', 'Lsat_1_v5_gn_3_125540' => 'lsa', 'Lsat_1_v5_gn_5_72701' => 'lsa', 'Lsat_1_v5_gn_8_91560' => 'lsa', 'Lsat_1_v5_gn_9_9640' => 'lsa', 'Manes.01G200600' => 'mes', 'Manes.01G200700' => 'mes', 'Manes.03G168900' => 'mes', 'Manes.03G169000' => 'mes', 'Manes.05G085801' => 'mes', 'Manes.05G086200' => 'mes', 'Manes.15G036700' => 'mes', 'Manes.15G036900' => 'mes', 'Mapoly0004s0172' => 'mpo', 'Mapoly0023s0001' => 'mpo', 'Mapoly0142s0012' => 'mpo', 'MBI01_g32854_MAGBIO' => 'mbi', 'MBI11_g24427_MAGBIO' => 'mbi', 'MBI11_g47319_MAGBIO' => 'mbi', 'MCO01G433' => 'mco', 'MD00G1187800' => 'mdo', 'MD04G1226500' => 'mdo', 'MD05G1203900' => 'mdo', 'MD10G1191100' => 'mdo', 'MD12G1243500' => 'mdo', 'MD13G1207000' => 'mdo', 'MD13G1207100' => 'mdo', 'MD16G1208600' => 'mdo', 'Medtr1g050352' => 'mtr', 'Medtr1g070385' => 'mtr', 'Medtr1g070450' => 'mtr', 'Medtr1g075200' => 'mtr', 'Medtr1g075250' => 'mtr', 'Medtr1g075260' => 'mtr', 'Medtr1g475250' => 'mtr', 'Medtr4g075450' => 'mtr', 'Medtr7g096300' => 'mtr', 'Medtr8g105110' => 'mtr', 'MELO3C006470.2' => 'cme', 'MELO3C006471.2' => 'cme', 'MELO3C020772.2' => 'cme', 'MELO3C026780.2' => 'cme', 'MELO3C026781.2' => 'cme', 'Migut.D00390' => 'egut', 'Migut.G00435' => 'egut', 'Migut.G00436' => 'egut', 'Migut.G00718' => 'egut', 'MSTRG.21891' => 'ama', 'MSTRG.26910' => 'ama', 'MSTRG.4099' => 'ama', 'MSTRG.9925' => 'ama', 'Nitab4.5_0000165g0010' => 'nta', 'Nitab4.5_0000209g0180' => 'nta', 'Nitab4.5_0000244g0440' => 'nta', 'Nitab4.5_0000525g0220' => 'nta', 'Nitab4.5_0001597g0020' => 'nta', 'Nitab4.5_0001878g0040' => 'nta', 'Nitab4.5_0001878g0060' => 'nta', 'Nitab4.5_0002838g0100' => 'nta', 'Nitab4.5_0002838g0120' => 'nta', 'Nitab4.5_0004798g0030' => 'nta', 'Nitab4.5_0005420g0010' => 'nta', 'Nitab4.5_0005507g0010' => 'nta', 'Nitab4.5_0005574g0020' => 'nta', 'Nitab4.5_0005838g0010' => 'nta', 'Nitab4.5_0010580g0020' => 'nta', 'Nn1g02599' => 'nnu', 'Nn1g02608' => 'nnu', 'Nn3g17742' => 'nnu', 'Nn3g19534' => 'nnu', 'Nn3g19535' => 'nnu', 'Oeu008790.1' => 'oeu', 'Oeu008792.1' => 'oeu', 'Oeu032590.1' => 'oeu', 'Oeu035349.1' => 'oeu', 'Oeu049791.1' => 'oeu', 'Os01g0774500' => 'osa', 'Os03g0628800' => 'osa', 'Os03g0798600' => 'osa', 'Os05g0508800' => 'osa', 'Peaxi162Scf00036g02018' => 'pax', 'Peaxi162Scf00578g00032' => 'pax', 'Peaxi162Scf00578g00317' => 'pax', 'Peaxi162Scf00785g00114' => 'pax', 'Peaxi162Scf00813g00119' => 'pax', 'Peaxi162Scf00906g00227' => 'pax', 'PGR004G0875' => 'pgr', 'PGR004G2424' => 'pgr', 'PGR031G1239' => 'pgr', 'PGR031G2474' => 'pgr', 'PGR044G0423' => 'pgr', 'PGSC0003DMG400001128' => 'stu', 'PGSC0003DMG400007336' => 'stu', 'PGSC0003DMG400016318' => 'stu', 'PGSC0003DMG400016319' => 'stu', 'PGSC0003DMG400018074' => 'stu', 'Phvul.001G157700' => 'pvu', 'Phvul.002G148550' => 'pvu', 'Phvul.002G320200' => 'pvu', 'Phvul.003G089200' => 'pvu', 'Phvul.007G126000' => 'pvu', 'Phvul.007G126100' => 'pvu', 'Phvul.007G178000' => 'pvu', 'Phvul.007G178200' => 'pvu', 'Potri.002G043000' => 'ptr', 'Potri.002G043200' => 'ptr', 'Potri.003G123750' => 'ptr', 'Potri.005G055401' => 'ptr', 'Potri.005G219700' => 'ptr', 'Potri.005G220000' => 'ptr', 'Potri.008G161901' => 'ptr', 'Potri.008G162000' => 'ptr', 'Potri.008G162400' => 'ptr', 'Potri.010G076900' => 'ptr', 'Pp3c12_9180' => 'ppa', 'Pp3c13_19770' => 'ppa', 'Pp3c14_22950' => 'ppa', 'Pp3c16_12160' => 'ppa', 'Pp3c27_7820' => 'ppa', 'Pp3c2_3490' => 'ppa', 'Pp3c3_23700' => 'ppa', 'Pp3c3_36520' => 'ppa', 'Pp3c4_15250' => 'ppa', 'PRCOL_00007002' => 'pco', 'Prupe.1G030600' => 'ppe', 'Prupe.1G030700' => 'ppe', 'Prupe.6G345200' => 'ppe', 'Prupe.8G230300' => 'ppe', 'Prupe.8G230500' => 'ppe', 'Psat3g059600' => 'psa', 'Psat5g200920' => 'psa', 'Psat6g056440' => 'psa', 'Psat6g057360' => 'psa', 'Psat6g134120' => 'psa', 'Psat6g134160' => 'psa', 'Psat7g008640' => 'psa', 'Psat7g185240' => 'psa', 'PSO017G1330' => 'pso', 'PSO063G6097' => 'pso', 'PSO170G0835' => 'pso', 'PSO170G2499' => 'pso', 'PSO210G5058' => 'pso', 'PSO210G6154' => 'pso', 'PSO585G0031' => 'pso', 'PSO832G0264' => 'pso', 'PSO832G4288' => 'pso', 'QL03p027355' => 'qlo', 'QL03p027430' => 'qlo', 'QL04p081380' => 'qlo', 'QL06p015642' => 'qlo', 'QL06p015650' => 'qlo', 'QL06p015686' => 'qlo', 'QL12p042927' => 'qlo', 'QL93p1863_0035' => 'qlo', 'RcHm_v2.0_Chr3g0450581' => 'rch', 'RcHm_v2.0_Chr4g0390371' => 'rch', 'RcHm_v2.0_Chr4g0390381' => 'rch', 'RcHm_v2.0_Chr4g0390491' => 'rch', 'RcHm_v2.0_Chr4g0390501' => 'rch', 'RcHm_v2.0_Chr6g0289231' => 'rch', 'Rhsim04G0190400' => 'rsi', 'Rhsim04G0190500' => 'rsi', 'Rhsim04G0190600' => 'rsi', 'Rhsim13G0031400' => 'rsi', 'Rhsim13G0165600' => 'rsi', 'RhsimUnG0114600' => 'rsi', 'RhsimUnG0114700' => 'rsi', 'Sabra02G0034800' => 'sbr', 'Sabra02G0035100' => 'sbr', 'Sabra05G0168600' => 'sbr', 'Sabra05G0168800' => 'sbr', 'Sabra08G0123700' => 'sbr', 'Sabra10G0031900' => 'sbr', 'Sabra13G0039000' => 'sbr', 'SalBow2G0782' => 'sbo', 'SalBow2G1403' => 'sbo', 'SalBow4G0074' => 'sbo', 'SalBow4G2635' => 'sbo', 'SalBow5G3010' => 'sbo', 'Sc05g0000870' => 'sci', 'Sc05g0000890' => 'sci', 'Sc13g0005000' => 'sci', 'Sc13g0005030' => 'sci', 'Sc19g0003790' => 'sci', 'Sc19g0003800' => 'sci', 'Sed0003467' => 'sed', 'Sed0009355' => 'sed', 'Sed0009894' => 'sed', 'Sed0011972' => 'sed', 'Sed0021483' => 'sed', 'Sed0021750' => 'sed', 'Sed0026279' => 'sed', 'SEGI_05312' => 'sgi', 'SEGI_10112' => 'sgi', 'SEGI_15835' => 'sgi', 'SEGI_30386' => 'sgi', 'SEGI_34122' => 'sgi', 'SEGI_35063' => 'sgi', 'SGA_v2.0_scaffold101G29794' => 'sas', 'SGA_v2.0_scaffold1G00573' => 'sas', 'SGA_v2.0_scaffold79G25637' => 'sas', 'SGA_v2.0_scaffold88G27283' => 'sas', 'SGA_v2.0_scaffold88G27285' => 'sas', 'SGA_v2.0_scaffold88G27331' => 'sas', 'SHI09937' => 'shi', 'SMO119G0302' => 'smo', 'SMO137G0231' => 'smo', 'SMO367G1151' => 'smo', 'Solyc02g082000.3' => 'sly', 'Solyc06g031670.3' => 'sly', 'Solyc06g053810.3' => 'sly', 'Solyc07g025457.1' => 'sly', 'Solyc08g059740.1' => 'sly', 'Solyc08g059750.3' => 'sly', 'Solyc09g083370.3' => 'sly', 'Solyc12g038950.3' => 'sly', 'Sopen02g026630' => 'spe', 'Sopen06g018930' => 'spe', 'Sopen06g018940' => 'spe', 'Sopen08g009460' => 'spe', 'Sopen09g032290' => 'spe', 'Sp1g03080' => 'spa', 'Sp1g03090' => 'spa', 'Sp1g05480' => 'spa', 'Sp2g07860' => 'spa', 'Sp2g08430' => 'spa', 'Sp2g08440' => 'spa', 'Sp2g26200' => 'spa', 'Sp4g13170' => 'spa', 'Sp6g33840' => 'spa', 'SpUn1204_0010' => 'spa', 'TAR365G0908' => 'tar', 'TAR381G1270' => 'tar', 'TAR381G1651' => 'tar', 'TAR625G1131' => 'tar', 'TAR633G0962' => 'tar', 'TAR633G1729' => 'tar', 'TAR633G1864' => 'tar', 'TAR636G0221' => 'tar', 'TAR636G0314' => 'tar', 'TAR636G3202' => 'tar', 'THA.LOC104800805' => 'tha', 'THA.LOC104801096' => 'tha', 'THA.LOC104801555' => 'tha', 'THA.LOC104808491' => 'tha', 'THA.LOC104808595' => 'tha', 'THA.LOC104815985' => 'tha', 'THA.LOC104822250' => 'tha', 'THA.LOC104826071' => 'tha', 'Thecc.01G265200' => 'tca', 'Thecc.01G265300' => 'tca', 'Thecc.01G265700' => 'tca', 'Thecc.03G109100' => 'tca', 'Thecc.04G245900' => 'tca', 'Thecc.04G246000' => 'tca', 'Thhalv10003334m.g' => 'esa', 'Thhalv10005508m.g' => 'esa', 'Thhalv10005643m.g' => 'esa', 'Thhalv10007316m.g' => 'esa', 'Thhalv10009006m.g' => 'esa', 'Thhalv10009309m.g' => 'esa', 'Thhalv10014917m.g' => 'esa', 'Thhalv10014919m.g' => 'esa', 'Thhalv10015393m.g' => 'esa', 'Thhalv10016515m.g' => 'esa', 'Thhalv10029242m.g' => 'esa', 'TPR.G16654' => 'tpr', 'TPR.G20589' => 'tpr', 'TPR.G23029' => 'tpr', 'TPR.G27731' => 'tpr', 'TPR.G28889' => 'tpr', 'TPR.G28899' => 'tpr', 'TPR.G30846' => 'tpr', 'TPR.G5452' => 'tpr', 'TPR.G5713' => 'tpr', 'TPR.G9046' => 'tpr', 'TPR.G9061' => 'tpr', 'TWI09G1075' => 'twi', 'TWI12G0806' => 'twi', 'TWI18G0108' => 'twi', 'TWI53G1361' => 'twi', 'TWI73G0185' => 'twi', 'TWI73G0427' => 'twi', 'unitig_37.g12001' => 'ugi', 'unitig_747.g21660' => 'ugi', 'unitig_748.g7232' => 'ugi', 'unitig_748.g7315' => 'ugi', 'unitig_85.g27262' => 'ugi', 'unitig_92.g28220' => 'ugi', 'vmacro02632' => 'vma', 'vmacro08410' => 'vma', 'vmacro08411' => 'vma', 'vmacro15407' => 'vma', 'VMungo0251G3619' => 'vmu', 'VMungo0720G1204' => 'vmu', 'VMungo0720G1918' => 'vmu', 'VMungo0720G2387' => 'vmu', 'VMungo0720G2961' => 'vmu', 'VMungo1215G2154' => 'vmu', 'VMungo1383G2411' => 'vmu', 'Zm00001eb051130' => 'zma', 'Zm00001eb116830' => 'zma', 'Zm00001eb116850' => 'zma', 'Zm00001eb151740' => 'zma', 'Zm00001eb292360' => 'zma', 'Zm00001eb301640' => 'zma' ) $gf_id = 'HOM05D000856' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000856' ) $data_identifier = 'HOM05D000856' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 13, 'ath' => (int) 10, 'atr' => (int) 1, 'acertr' => (int) 8, 'cqu' => (int) 6, 'bca' => (int) 21, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 11, 'car' => (int) 9, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 8, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 5, 'fan' => (int) 16, 'fve' => (int) 6, 'gma' => (int) 11, 'ghi' => (int) 19, 'gra' => (int) 9, 'vvi' => (int) 7, 'han' => (int) 17, 'cav' => (int) 5, 'hma' => (int) 2, 'vpl' => (int) 2, 'sun' => (int) 7, 'lal' => (int) 9, 'lja' => (int) 5, 'lonja' => (int) 9, 'lsa' => (int) 5, 'mes' => (int) 8, 'mpo' => (int) 3, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 10, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 15, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 9, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 9, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 6, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 5, 'spa' => (int) 10, 'tar' => (int) 10, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 11, 'tpr' => (int) 11, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 4, 'vmu' => (int) 7, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb301640' $species_info = array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ) $local_species = 'vma' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000856', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p00010' => 'bna', 'A03p04160' => 'bna', 'A03p17160' => 'bna', 'A04p23370' => 'bna', 'A05p14860' => 'bna', 'A08p37020' => 'bna', 'A09p08050' => 'bna', 'A09p66800' => 'bna', 'A09p67940' => 'bna', 'A10p02680' => 'bna', 'A10p05320' => 'bna', 'Aa31LG1G20560' => 'aar', 'Aa31LG1G20610' => 'aar', 'Aa31LG1G7810' => 'aar', 'Aa31LG5G3590' => 'aar', 'Aa31LG5G6140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3819' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4683' => 'aag', 'Actinidia04480' => 'ach', 'Actinidia05466' => 'ach', 'Actinidia08445' => 'ach', 'Actinidia21170' => 'ach', 'Actinidia24812' => 'ach', 'Actinidia24951' => 'ach', 'Actinidia40088' => 'ach', 'Ah.02g111660' => 'amhyb', 'Ah.11g048900' => 'amhyb', 'Ah.11g049910' => 'amhyb', 'AL1G13870' => 'aly', 'AL1G13880' => 'aly', 'AL1G16760' => 'aly', 'AL390U10020' => 'aly', 'AL4G25520' => 'aly', 'AL6G19890' => 'aly', 'AL6G19900' => 'aly', 'AL6G19910' => 'aly', 'AL8G40100' => 'aly', 'Aqoxy2G03562' => 'aox', 'Aqoxy5G00316' => 'aox', 'Aqoxy5G00926' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1628KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1H403S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2FU6SJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.882I6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8YRY2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YN1SN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AF70II' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZA8L1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F916KL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHRD8H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KTZ8QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S22EMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8M29T' => 'arhy', 'AT1G04270' => 'ath', 'AT1G04280' => 'ath', 'AT1G06750' => 'ath', 'AT1G33850' => 'ath', 'AT2G30630' => 'ath', 'AT5G09490' => 'ath', 'AT5G09500' => 'ath', 'AT5G09510' => 'ath', 'AT5G43640' => 'ath', 'AT5G63070' => 'ath', 'ATR0605G315' => 'atr', 'Atru.chr11.175' => 'acertr', 'Atru.chr11.653' => 'acertr', 'Atru.chr3.1616' => 'acertr', 'Atru.chr4.2230' => 'acertr', 'Atru.chr4.2232' => 'acertr', 'Atru.chr5.1598' => 'acertr', 'Atru.chr5.1600' => 'acertr', 'Atru.chr5.2188' => 'acertr', 'AUR62008326' => 'cqu', 'AUR62011922' => 'cqu', 'AUR62011924' => 'cqu', 'AUR62021771' => 'cqu', 'AUR62032237' => 'cqu', 'AUR62032240' => 'cqu', 'BcaB01g05572' => 'bca', 'BcaB02g10337' => 'bca', 'BcaB04g19944' => 'bca', 'BcaB05g21548' => 'bca', 'BcaB05g21549' => 'bca', 'BcaB05g23227' => 'bca', 'BcaB06g26256' => 'bca', 'BcaB06g26257' => 'bca', 'BcaB06g28379' => 'bca', 'BcaC02g11159' => 'bca', 'BcaC03g13258' => 'bca', 'BcaC03g13259' => 'bca', 'BcaC05g24456' => 'bca', 'BcaC05g24457' => 'bca', 'BcaC07g36922' => 'bca', 'BcaC07g36923' => 'bca', 'BcaC07g42050' => 'bca', 'BcaC07g42176' => 'bca', 'BcaC07g42195' => 'bca', 'BcaC07g42196' => 'bca', 'BcaNung06674' => 'bca', 'BolC2t06351H' => 'bol', 'BolC2t06352H' => 'bol', 'BolC3t12993H' => 'bol', 'BolC4t23525H' => 'bol', 'BolC4t27475H' => 'bol', 'BolC5t29025H' => 'bol', 'BolC5t29026H' => 'bol', 'BolC8t46898H' => 'bol', 'BolC8t46899H' => 'bol', 'BolC8t52630H' => 'bol', 'BolC8t52765H' => 'bol', 'BolC9t53824H' => 'bol', 'BraA03t09760Z' => 'bra', 'BraA03t10990Z' => 'bra', 'BraA05t20413Z' => 'bra', 'BraA08t35602Z' => 'bra', 'BraA09t36458Z' => 'bra', 'BraA09t42018Z' => 'bra', 'BraA09t42129Z' => 'bra', 'BraA10t42536Z' => 'bra', 'BraA10t42537Z' => 'bra', 'C01p10690' => 'bna', 'C02p03890' => 'bna', 'C02p03900' => 'bna', 'C03p04620' => 'bna', 'C04p19870' => 'bna', 'C04p59670' => 'bna', 'C05p02460' => 'bna', 'C05p02470' => 'bna', 'C08p00980' => 'bna', 'C08p00990' => 'bna', 'C08p51030' => 'bna', 'C08p52360' => 'bna', 'C09p09120' => 'bna', 'CAN.G19.15' => 'can', 'CAN.G251.10' => 'can', 'CAN.G251.9' => 'can', 'CAN.G398.24' => 'can', 'CAN.G410.32' => 'can', 'CAN.G881.2' => 'can', 'CANSAT01G3025' => 'cansat', 'CANSAT78G1211' => 'cansat', 'CANSAT78G1218' => 'cansat', 'CANSAT78G1521' => 'cansat', 'CANSAT78G1670' => 'cansat', 'CARHR003600' => 'chi', 'CARHR003610' => 'chi', 'CARHR006290' => 'chi', 'CARHR006430' => 'chi', 'CARHR124110' => 'chi', 'CARHR203870' => 'chi', 'CARHR203880' => 'chi', 'CARHR203890' => 'chi', 'CARHR276880' => 'chi', 'Carub.0001s0346' => 'cru', 'Carub.0001s0347' => 'cru', 'Carub.0001s0607' => 'cru', 'Carub.0003s2768' => 'cru', 'Carub.0003s2769' => 'cru', 'Carub.0004s1178' => 'cru', 'Carub.0006s0806' => 'cru', 'Carub.0006s0807' => 'cru', 'Carub.0006s0808' => 'cru', 'Carub.0008s0501' => 'cru', 'Carub.0008s2379' => 'cru', 'Ca_08655_v3' => 'car', 'Ca_08922_v3' => 'car', 'Ca_08923_v3' => 'car', 'Ca_09119_v3' => 'car', 'Ca_09703_v3' => 'car', 'Ca_09705_v3' => 'car', 'Ca_09835_v3' => 'car', 'Ca_26403_v3' => 'car', 'Ca_30719_v3' => 'car', 'CBR_g17958' => 'cbr', 'CBR_g40516' => 'cbr', 'Cc00_g05350' => 'ccan', 'Cc01_g18690' => 'ccan', 'Cc03_g04830' => 'ccan', 'Cc03_g04850' => 'ccan', 'CDE02G4469' => 'cde', 'CDE06G0883' => 'cde', 'CDE06G1295' => 'cde', 'CDE06G1390' => 'cde', 'CDE07G0584' => 'cde', 'CDE07G1084' => 'cde', 'CDE08G1259' => 'cde', 'Cfa002341' => 'cfa', 'Cfa024337' => 'cfa', 'Ciclev10004749m.g' => 'ccl', 'Ciclev10006127m.g' => 'ccl', 'Ciclev10019720m.g' => 'ccl', 'Ciclev10022652m.g' => 'ccl', 'CiPaw.01G190400' => 'cil', 'CiPaw.01G190500' => 'cil', 'CiPaw.02G116400' => 'cil', 'CiPaw.02G116500' => 'cil', 'CiPaw.04G183000' => 'cil', 'CiPaw.04G183300' => 'cil', 'ClCG05G004610' => 'cla', 'ClCG05G004620' => 'cla', 'ClCG06G006730' => 'cla', 'ClCG06G006740' => 'cla', 'ClCG11G003690' => 'cla', 'COL.COLO4_08276' => 'col', 'COL.COLO4_08277' => 'col', 'COL.COLO4_15787' => 'col', 'COL.COLO4_15789' => 'col', 'Cpa.g.c44815' => 'cpa', 'Cpa.g.sc52.144' => 'cpa', 'Cpa.g.sc58.46' => 'cpa', 'Cpa.g.sc58.47' => 'cpa', 'Cre08.g360900' => 'cre', 'CsaV3_2G013030' => 'csa', 'CsaV3_2G013050' => 'csa', 'CsaV3_2G015620' => 'csa', 'CsaV3_3G012590' => 'csa', 'CsaV3_3G012600' => 'csa', 'CSS0001641' => 'camsi', 'CSS0008310' => 'camsi', 'CSS0013011' => 'camsi', 'CSS0017147' => 'camsi', 'CSS0022970' => 'camsi', 'CSS0025655' => 'camsi', 'CSS0028665' => 'camsi', 'CSS0029117' => 'camsi', 'CSS0032024' => 'camsi', 'CSS0039681' => 'camsi', 'CSS0046516' => 'camsi', 'CSS0050307' => 'camsi', 'DCAR_005871' => 'dca', 'DCAR_007342' => 'dca', 'DCAR_024228' => 'dca', 'DCAR_027277' => 'dca', 'DCAR_030718' => 'dca', 'Dinv20287' => 'din', 'Dinv22461' => 'din', 'Dinv22464' => 'din', 'Dinv29912' => 'din', 'Dinv29913' => 'din', 'Dinv34580' => 'din', 'Dinv34582' => 'din', 'Dinv44632' => 'din', 'Duzib052G0266' => 'dzi', 'Duzib133G0907' => 'dzi', 'Duzib133G1034' => 'dzi', 'Duzib138G0207' => 'dzi', 'Duzib138G0491' => 'dzi', 'Duzib151G0812' => 'dzi', 'Duzib151G1166' => 'dzi', 'Duzib168G0192' => 'dzi', 'Duzib211G0077' => 'dzi', 'Duzib212G0429' => 'dzi', 'Duzib212G0472' => 'dzi', 'ECA233G2617' => 'eca', 'ECA236G4188' => 'eca', 'ECA240G0936' => 'eca', 'ECA240G1129' => 'eca', 'ECA247G0623' => 'eca', 'EL10Ac5g10451' => 'bvu', 'EL10Ac5g10453' => 'bvu', 'EL10Ac5g10894' => 'bvu', 'Eucgr.H00192' => 'egr', 'Eucgr.H00193' => 'egr', 'Eucgr.H00194' => 'egr', 'Eucgr.J01562' => 'egr', 'Eucgr.K03301' => 'egr', 'FAN02G0632' => 'fan', 'FAN05G5378' => 'fan', 'FAN09G3247' => 'fan', 'FAN12G0435' => 'fan', 'FAN12G2426' => 'fan', 'FAN14G1707' => 'fan', 'FAN14G4725' => 'fan', 'FAN15G2071' => 'fan', 'FAN17G3065' => 'fan', 'FAN19G1376' => 'fan', 'FAN20G0354' => 'fan', 'FAN20G2429' => 'fan', 'FAN20G2658' => 'fan', 'FAN24G2343' => 'fan', 'FAN27G2362' => 'fan', 'FAN28G1765' => 'fan', 'FvH4_1g16020' => 'fve', 'FvH4_2g04890' => 'fve', 'FvH4_2g22270' => 'fve', 'FvH4_4g02630' => 'fve', 'FvH4_4g02640' => 'fve', 'FvH4_6g02650' => 'fve', 'Glyma.02G140600' => 'gma', 'Glyma.03G159900' => 'gma', 'Glyma.05G234800' => 'gma', 'Glyma.07G269600' => 'gma', 'Glyma.08G042300' => 'gma', 'Glyma.10G033500' => 'gma', 'Glyma.10G185200' => 'gma', 'Glyma.17G004300' => 'gma', 'Glyma.19G161900' => 'gma', 'Glyma.20G205100' => 'gma', 'Glyma.20G205200' => 'gma', 'Gohir.A01G139101' => 'ghi', 'Gohir.A02G035600' => 'ghi', 'Gohir.A02G117901' => 'ghi', 'Gohir.A07G210100' => 'ghi', 'Gohir.A07G210200' => 'ghi', 'Gohir.A08G061100' => 'ghi', 'Gohir.A09G223000' => 'ghi', 'Gohir.A09G223100' => 'ghi', 'Gohir.A10G113900' => 'ghi', 'Gohir.A10G114000' => 'ghi', 'Gohir.D02G042300' => 'ghi', 'Gohir.D07G216100' => 'ghi', 'Gohir.D07G216200' => 'ghi', 'Gohir.D08G070400' => 'ghi', 'Gohir.D09G225000' => 'ghi', 'Gohir.D09G225100' => 'ghi', 'Gohir.D10G152300' => 'ghi', 'Gohir.D10G153200' => 'ghi', 'Gohir.D11G133701' => 'ghi', 'Gorai.004G074100' => 'gra', 'Gorai.005G046800' => 'gra', 'Gorai.006G246500' => 'gra', 'Gorai.006G246600' => 'gra', 'Gorai.007G142900' => 'gra', 'Gorai.011G171000' => 'gra', 'Gorai.011G171100' => 'gra', 'Gorai.013G104300' => 'gra', 'Gorai.013G104400' => 'gra', 'GSVIVG01000754001' => 'vvi', 'GSVIVG01000756001' => 'vvi', 'GSVIVG01010903001' => 'vvi', 'GSVIVG01017623001' => 'vvi', 'GSVIVG01018113001' => 'vvi', 'GSVIVG01018116001' => 'vvi', 'GSVIVG01018118001' => 'vvi', 'HanXRQChr03g0076211' => 'han', 'HanXRQChr03g0092431' => 'han', 'HanXRQChr03g0092441' => 'han', 'HanXRQChr03g0092591' => 'han', 'HanXRQChr03g0092671' => 'han', 'HanXRQChr03g0092681' => 'han', 'HanXRQChr03g0092691' => 'han', 'HanXRQChr03g0092701' => 'han', 'HanXRQChr03g0092721' => 'han', 'HanXRQChr03g0092731' => 'han', 'HanXRQChr04g0113681' => 'han', 'HanXRQChr10g0281371' => 'han', 'HanXRQChr11g0337141' => 'han', 'HanXRQChr13g0424521' => 'han', 'HanXRQChr13g0424531' => 'han', 'HanXRQChr13g0424541' => 'han', 'HanXRQChr16g0498221' => 'han', 'Haze_04377' => 'cav', 'Haze_11298' => 'cav', 'Haze_24547' => 'cav', 'Haze_24550' => 'cav', 'Haze_26587' => 'cav', 'Hma1.2p1_0650F.1_g195410' => 'hma', 'Hma1.2p1_0893F.1_g233470' => 'hma', 'HPP92_006508' => 'vpl', 'HPP92_024780' => 'vpl', 'Hund02688' => 'sun', 'Hund09380' => 'sun', 'Hund09381' => 'sun', 'Hund09832' => 'sun', 'Hund09833' => 'sun', 'Hund11351' => 'sun', 'Hund11513' => 'sun', 'Lalb_Chr06g0162591' => 'lal', 'Lalb_Chr06g0162601' => 'lal', 'Lalb_Chr06g0169321' => 'lal', 'Lalb_Chr09g0330951' => 'lal', 'Lalb_Chr16g0387631' => 'lal', 'Lalb_Chr21g0306241' => 'lal', 'Lalb_Chr25g0290051' => 'lal', 'Lalb_Chr25g0290061' => 'lal', 'Lalb_Chr25g0290071' => 'lal', 'Lj1g0003876' => 'lja', 'Lj1P1207T36' => 'lonja', 'Lj2C1156G12' => 'lonja', 'Lj3A793G39' => 'lonja', 'Lj3C580G2' => 'lonja', 'Lj3C780G2' => 'lonja', 'Lj3C780T4' => 'lonja', 'Lj3C793G9' => 'lonja', 'Lj4g0012960' => 'lja', 'Lj5g0021252' => 'lja', 'Lj5g0021484' => 'lja', 'Lj5g0024528' => 'lja', 'Lj6A399T12' => 'lonja', 'Lj6A656G65' => 'lonja', 'Lsat_1_v5_gn_3_125500' => 'lsa', 'Lsat_1_v5_gn_3_125540' => 'lsa', 'Lsat_1_v5_gn_5_72701' => 'lsa', 'Lsat_1_v5_gn_8_91560' => 'lsa', 'Lsat_1_v5_gn_9_9640' => 'lsa', 'Manes.01G200600' => 'mes', 'Manes.01G200700' => 'mes', 'Manes.03G168900' => 'mes', 'Manes.03G169000' => 'mes', 'Manes.05G085801' => 'mes', 'Manes.05G086200' => 'mes', 'Manes.15G036700' => 'mes', 'Manes.15G036900' => 'mes', 'Mapoly0004s0172' => 'mpo', 'Mapoly0023s0001' => 'mpo', 'Mapoly0142s0012' => 'mpo', 'MBI01_g32854_MAGBIO' => 'mbi', 'MBI11_g24427_MAGBIO' => 'mbi', 'MBI11_g47319_MAGBIO' => 'mbi', 'MCO01G433' => 'mco', 'MD00G1187800' => 'mdo', 'MD04G1226500' => 'mdo', 'MD05G1203900' => 'mdo', 'MD10G1191100' => 'mdo', 'MD12G1243500' => 'mdo', 'MD13G1207000' => 'mdo', 'MD13G1207100' => 'mdo', 'MD16G1208600' => 'mdo', 'Medtr1g050352' => 'mtr', 'Medtr1g070385' => 'mtr', 'Medtr1g070450' => 'mtr', 'Medtr1g075200' => 'mtr', 'Medtr1g075250' => 'mtr', 'Medtr1g075260' => 'mtr', 'Medtr1g475250' => 'mtr', 'Medtr4g075450' => 'mtr', 'Medtr7g096300' => 'mtr', 'Medtr8g105110' => 'mtr', 'MELO3C006470.2' => 'cme', 'MELO3C006471.2' => 'cme', 'MELO3C020772.2' => 'cme', 'MELO3C026780.2' => 'cme', 'MELO3C026781.2' => 'cme', 'Migut.D00390' => 'egut', 'Migut.G00435' => 'egut', 'Migut.G00436' => 'egut', 'Migut.G00718' => 'egut', 'MSTRG.21891' => 'ama', 'MSTRG.26910' => 'ama', 'MSTRG.4099' => 'ama', 'MSTRG.9925' => 'ama', 'Nitab4.5_0000165g0010' => 'nta', 'Nitab4.5_0000209g0180' => 'nta', 'Nitab4.5_0000244g0440' => 'nta', 'Nitab4.5_0000525g0220' => 'nta', 'Nitab4.5_0001597g0020' => 'nta', 'Nitab4.5_0001878g0040' => 'nta', 'Nitab4.5_0001878g0060' => 'nta', 'Nitab4.5_0002838g0100' => 'nta', 'Nitab4.5_0002838g0120' => 'nta', 'Nitab4.5_0004798g0030' => 'nta', 'Nitab4.5_0005420g0010' => 'nta', 'Nitab4.5_0005507g0010' => 'nta', 'Nitab4.5_0005574g0020' => 'nta', 'Nitab4.5_0005838g0010' => 'nta', 'Nitab4.5_0010580g0020' => 'nta', 'Nn1g02599' => 'nnu', 'Nn1g02608' => 'nnu', 'Nn3g17742' => 'nnu', 'Nn3g19534' => 'nnu', 'Nn3g19535' => 'nnu', 'Oeu008790.1' => 'oeu', 'Oeu008792.1' => 'oeu', 'Oeu032590.1' => 'oeu', 'Oeu035349.1' => 'oeu', 'Oeu049791.1' => 'oeu', 'Os01g0774500' => 'osa', 'Os03g0628800' => 'osa', 'Os03g0798600' => 'osa', 'Os05g0508800' => 'osa', 'Peaxi162Scf00036g02018' => 'pax', 'Peaxi162Scf00578g00032' => 'pax', 'Peaxi162Scf00578g00317' => 'pax', 'Peaxi162Scf00785g00114' => 'pax', 'Peaxi162Scf00813g00119' => 'pax', 'Peaxi162Scf00906g00227' => 'pax', 'PGR004G0875' => 'pgr', 'PGR004G2424' => 'pgr', 'PGR031G1239' => 'pgr', 'PGR031G2474' => 'pgr', 'PGR044G0423' => 'pgr', 'PGSC0003DMG400001128' => 'stu', 'PGSC0003DMG400007336' => 'stu', 'PGSC0003DMG400016318' => 'stu', 'PGSC0003DMG400016319' => 'stu', 'PGSC0003DMG400018074' => 'stu', 'Phvul.001G157700' => 'pvu', 'Phvul.002G148550' => 'pvu', 'Phvul.002G320200' => 'pvu', 'Phvul.003G089200' => 'pvu', 'Phvul.007G126000' => 'pvu', 'Phvul.007G126100' => 'pvu', 'Phvul.007G178000' => 'pvu', 'Phvul.007G178200' => 'pvu', 'Potri.002G043000' => 'ptr', 'Potri.002G043200' => 'ptr', 'Potri.003G123750' => 'ptr', 'Potri.005G055401' => 'ptr', 'Potri.005G219700' => 'ptr', 'Potri.005G220000' => 'ptr', 'Potri.008G161901' => 'ptr', 'Potri.008G162000' => 'ptr', 'Potri.008G162400' => 'ptr', 'Potri.010G076900' => 'ptr', 'Pp3c12_9180' => 'ppa', 'Pp3c13_19770' => 'ppa', 'Pp3c14_22950' => 'ppa', 'Pp3c16_12160' => 'ppa', 'Pp3c27_7820' => 'ppa', 'Pp3c2_3490' => 'ppa', 'Pp3c3_23700' => 'ppa', 'Pp3c3_36520' => 'ppa', 'Pp3c4_15250' => 'ppa', 'PRCOL_00007002' => 'pco', 'Prupe.1G030600' => 'ppe', 'Prupe.1G030700' => 'ppe', 'Prupe.6G345200' => 'ppe', 'Prupe.8G230300' => 'ppe', 'Prupe.8G230500' => 'ppe', 'Psat3g059600' => 'psa', 'Psat5g200920' => 'psa', 'Psat6g056440' => 'psa', 'Psat6g057360' => 'psa', 'Psat6g134120' => 'psa', 'Psat6g134160' => 'psa', 'Psat7g008640' => 'psa', 'Psat7g185240' => 'psa', 'PSO017G1330' => 'pso', 'PSO063G6097' => 'pso', 'PSO170G0835' => 'pso', 'PSO170G2499' => 'pso', 'PSO210G5058' => 'pso', 'PSO210G6154' => 'pso', 'PSO585G0031' => 'pso', 'PSO832G0264' => 'pso', 'PSO832G4288' => 'pso', 'QL03p027355' => 'qlo', 'QL03p027430' => 'qlo', 'QL04p081380' => 'qlo', 'QL06p015642' => 'qlo', 'QL06p015650' => 'qlo', 'QL06p015686' => 'qlo', 'QL12p042927' => 'qlo', 'QL93p1863_0035' => 'qlo', 'RcHm_v2.0_Chr3g0450581' => 'rch', 'RcHm_v2.0_Chr4g0390371' => 'rch', 'RcHm_v2.0_Chr4g0390381' => 'rch', 'RcHm_v2.0_Chr4g0390491' => 'rch', 'RcHm_v2.0_Chr4g0390501' => 'rch', 'RcHm_v2.0_Chr6g0289231' => 'rch', 'Rhsim04G0190400' => 'rsi', 'Rhsim04G0190500' => 'rsi', 'Rhsim04G0190600' => 'rsi', 'Rhsim13G0031400' => 'rsi', 'Rhsim13G0165600' => 'rsi', 'RhsimUnG0114600' => 'rsi', 'RhsimUnG0114700' => 'rsi', 'Sabra02G0034800' => 'sbr', 'Sabra02G0035100' => 'sbr', 'Sabra05G0168600' => 'sbr', 'Sabra05G0168800' => 'sbr', 'Sabra08G0123700' => 'sbr', 'Sabra10G0031900' => 'sbr', 'Sabra13G0039000' => 'sbr', 'SalBow2G0782' => 'sbo', 'SalBow2G1403' => 'sbo', 'SalBow4G0074' => 'sbo', 'SalBow4G2635' => 'sbo', 'SalBow5G3010' => 'sbo', 'Sc05g0000870' => 'sci', 'Sc05g0000890' => 'sci', 'Sc13g0005000' => 'sci', 'Sc13g0005030' => 'sci', 'Sc19g0003790' => 'sci', 'Sc19g0003800' => 'sci', 'Sed0003467' => 'sed', 'Sed0009355' => 'sed', 'Sed0009894' => 'sed', 'Sed0011972' => 'sed', 'Sed0021483' => 'sed', 'Sed0021750' => 'sed', 'Sed0026279' => 'sed', 'SEGI_05312' => 'sgi', 'SEGI_10112' => 'sgi', 'SEGI_15835' => 'sgi', 'SEGI_30386' => 'sgi', 'SEGI_34122' => 'sgi', 'SEGI_35063' => 'sgi', 'SGA_v2.0_scaffold101G29794' => 'sas', 'SGA_v2.0_scaffold1G00573' => 'sas', 'SGA_v2.0_scaffold79G25637' => 'sas', 'SGA_v2.0_scaffold88G27283' => 'sas', 'SGA_v2.0_scaffold88G27285' => 'sas', 'SGA_v2.0_scaffold88G27331' => 'sas', 'SHI09937' => 'shi', 'SMO119G0302' => 'smo', 'SMO137G0231' => 'smo', 'SMO367G1151' => 'smo', 'Solyc02g082000.3' => 'sly', 'Solyc06g031670.3' => 'sly', 'Solyc06g053810.3' => 'sly', 'Solyc07g025457.1' => 'sly', 'Solyc08g059740.1' => 'sly', 'Solyc08g059750.3' => 'sly', 'Solyc09g083370.3' => 'sly', 'Solyc12g038950.3' => 'sly', 'Sopen02g026630' => 'spe', 'Sopen06g018930' => 'spe', 'Sopen06g018940' => 'spe', 'Sopen08g009460' => 'spe', 'Sopen09g032290' => 'spe', 'Sp1g03080' => 'spa', 'Sp1g03090' => 'spa', 'Sp1g05480' => 'spa', 'Sp2g07860' => 'spa', 'Sp2g08430' => 'spa', 'Sp2g08440' => 'spa', 'Sp2g26200' => 'spa', 'Sp4g13170' => 'spa', 'Sp6g33840' => 'spa', 'SpUn1204_0010' => 'spa', 'TAR365G0908' => 'tar', 'TAR381G1270' => 'tar', 'TAR381G1651' => 'tar', 'TAR625G1131' => 'tar', 'TAR633G0962' => 'tar', 'TAR633G1729' => 'tar', 'TAR633G1864' => 'tar', 'TAR636G0221' => 'tar', 'TAR636G0314' => 'tar', 'TAR636G3202' => 'tar', 'THA.LOC104800805' => 'tha', 'THA.LOC104801096' => 'tha', 'THA.LOC104801555' => 'tha', 'THA.LOC104808491' => 'tha', 'THA.LOC104808595' => 'tha', 'THA.LOC104815985' => 'tha', 'THA.LOC104822250' => 'tha', 'THA.LOC104826071' => 'tha', 'Thecc.01G265200' => 'tca', 'Thecc.01G265300' => 'tca', 'Thecc.01G265700' => 'tca', 'Thecc.03G109100' => 'tca', 'Thecc.04G245900' => 'tca', 'Thecc.04G246000' => 'tca', 'Thhalv10003334m.g' => 'esa', 'Thhalv10005508m.g' => 'esa', 'Thhalv10005643m.g' => 'esa', 'Thhalv10007316m.g' => 'esa', 'Thhalv10009006m.g' => 'esa', 'Thhalv10009309m.g' => 'esa', 'Thhalv10014917m.g' => 'esa', 'Thhalv10014919m.g' => 'esa', 'Thhalv10015393m.g' => 'esa', 'Thhalv10016515m.g' => 'esa', 'Thhalv10029242m.g' => 'esa', 'TPR.G16654' => 'tpr', 'TPR.G20589' => 'tpr', 'TPR.G23029' => 'tpr', 'TPR.G27731' => 'tpr', 'TPR.G28889' => 'tpr', 'TPR.G28899' => 'tpr', 'TPR.G30846' => 'tpr', 'TPR.G5452' => 'tpr', 'TPR.G5713' => 'tpr', 'TPR.G9046' => 'tpr', 'TPR.G9061' => 'tpr', 'TWI09G1075' => 'twi', 'TWI12G0806' => 'twi', 'TWI18G0108' => 'twi', 'TWI53G1361' => 'twi', 'TWI73G0185' => 'twi', 'TWI73G0427' => 'twi', 'unitig_37.g12001' => 'ugi', 'unitig_747.g21660' => 'ugi', 'unitig_748.g7232' => 'ugi', 'unitig_748.g7315' => 'ugi', 'unitig_85.g27262' => 'ugi', 'unitig_92.g28220' => 'ugi', 'vmacro02632' => 'vma', 'vmacro08410' => 'vma', 'vmacro08411' => 'vma', 'vmacro15407' => 'vma', 'VMungo0251G3619' => 'vmu', 'VMungo0720G1204' => 'vmu', 'VMungo0720G1918' => 'vmu', 'VMungo0720G2387' => 'vmu', 'VMungo0720G2961' => 'vmu', 'VMungo1215G2154' => 'vmu', 'VMungo1383G2411' => 'vmu', 'Zm00001eb051130' => 'zma', 'Zm00001eb116830' => 'zma', 'Zm00001eb116850' => 'zma', 'Zm00001eb151740' => 'zma', 'Zm00001eb292360' => 'zma', 'Zm00001eb301640' => 'zma' ), 'gf_id' => 'HOM05D000856', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000856' ), 'data_identifier' => 'HOM05D000856', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000856', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p00010' => 'bna', 'A03p04160' => 'bna', 'A03p17160' => 'bna', 'A04p23370' => 'bna', 'A05p14860' => 'bna', 'A08p37020' => 'bna', 'A09p08050' => 'bna', 'A09p66800' => 'bna', 'A09p67940' => 'bna', 'A10p02680' => 'bna', 'A10p05320' => 'bna', 'Aa31LG1G20560' => 'aar', 'Aa31LG1G20610' => 'aar', 'Aa31LG1G7810' => 'aar', 'Aa31LG5G3590' => 'aar', 'Aa31LG5G6140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3819' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4683' => 'aag', 'Actinidia04480' => 'ach', 'Actinidia05466' => 'ach', 'Actinidia08445' => 'ach', 'Actinidia21170' => 'ach', 'Actinidia24812' => 'ach', 'Actinidia24951' => 'ach', 'Actinidia40088' => 'ach', 'Ah.02g111660' => 'amhyb', 'Ah.11g048900' => 'amhyb', 'Ah.11g049910' => 'amhyb', 'AL1G13870' => 'aly', 'AL1G13880' => 'aly', 'AL1G16760' => 'aly', 'AL390U10020' => 'aly', 'AL4G25520' => 'aly', 'AL6G19890' => 'aly', 'AL6G19900' => 'aly', 'AL6G19910' => 'aly', 'AL8G40100' => 'aly', 'Aqoxy2G03562' => 'aox', 'Aqoxy5G00316' => 'aox', 'Aqoxy5G00926' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1628KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1H403S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2FU6SJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.882I6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8YRY2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YN1SN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AF70II' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZA8L1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F916KL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHRD8H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KTZ8QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S22EMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8M29T' => 'arhy', 'AT1G04270' => 'ath', 'AT1G04280' => 'ath', 'AT1G06750' => 'ath', 'AT1G33850' => 'ath', 'AT2G30630' => 'ath', 'AT5G09490' => 'ath', 'AT5G09500' => 'ath', 'AT5G09510' => 'ath', 'AT5G43640' => 'ath', 'AT5G63070' => 'ath', 'ATR0605G315' => 'atr', 'Atru.chr11.175' => 'acertr', 'Atru.chr11.653' => 'acertr', 'Atru.chr3.1616' => 'acertr', 'Atru.chr4.2230' => 'acertr', 'Atru.chr4.2232' => 'acertr', 'Atru.chr5.1598' => 'acertr', 'Atru.chr5.1600' => 'acertr', 'Atru.chr5.2188' => 'acertr', 'AUR62008326' => 'cqu', 'AUR62011922' => 'cqu', 'AUR62011924' => 'cqu', 'AUR62021771' => 'cqu', 'AUR62032237' => 'cqu', 'AUR62032240' => 'cqu', 'BcaB01g05572' => 'bca', 'BcaB02g10337' => 'bca', 'BcaB04g19944' => 'bca', 'BcaB05g21548' => 'bca', 'BcaB05g21549' => 'bca', 'BcaB05g23227' => 'bca', 'BcaB06g26256' => 'bca', 'BcaB06g26257' => 'bca', 'BcaB06g28379' => 'bca', 'BcaC02g11159' => 'bca', 'BcaC03g13258' => 'bca', 'BcaC03g13259' => 'bca', 'BcaC05g24456' => 'bca', 'BcaC05g24457' => 'bca', 'BcaC07g36922' => 'bca', 'BcaC07g36923' => 'bca', 'BcaC07g42050' => 'bca', 'BcaC07g42176' => 'bca', 'BcaC07g42195' => 'bca', 'BcaC07g42196' => 'bca', 'BcaNung06674' => 'bca', 'BolC2t06351H' => 'bol', 'BolC2t06352H' => 'bol', 'BolC3t12993H' => 'bol', 'BolC4t23525H' => 'bol', 'BolC4t27475H' => 'bol', 'BolC5t29025H' => 'bol', 'BolC5t29026H' => 'bol', 'BolC8t46898H' => 'bol', 'BolC8t46899H' => 'bol', 'BolC8t52630H' => 'bol', 'BolC8t52765H' => 'bol', 'BolC9t53824H' => 'bol', 'BraA03t09760Z' => 'bra', 'BraA03t10990Z' => 'bra', 'BraA05t20413Z' => 'bra', 'BraA08t35602Z' => 'bra', 'BraA09t36458Z' => 'bra', 'BraA09t42018Z' => 'bra', 'BraA09t42129Z' => 'bra', 'BraA10t42536Z' => 'bra', 'BraA10t42537Z' => 'bra', 'C01p10690' => 'bna', 'C02p03890' => 'bna', 'C02p03900' => 'bna', 'C03p04620' => 'bna', 'C04p19870' => 'bna', 'C04p59670' => 'bna', 'C05p02460' => 'bna', 'C05p02470' => 'bna', 'C08p00980' => 'bna', 'C08p00990' => 'bna', 'C08p51030' => 'bna', 'C08p52360' => 'bna', 'C09p09120' => 'bna', 'CAN.G19.15' => 'can', 'CAN.G251.10' => 'can', 'CAN.G251.9' => 'can', 'CAN.G398.24' => 'can', 'CAN.G410.32' => 'can', 'CAN.G881.2' => 'can', 'CANSAT01G3025' => 'cansat', 'CANSAT78G1211' => 'cansat', 'CANSAT78G1218' => 'cansat', 'CANSAT78G1521' => 'cansat', 'CANSAT78G1670' => 'cansat', 'CARHR003600' => 'chi', 'CARHR003610' => 'chi', 'CARHR006290' => 'chi', 'CARHR006430' => 'chi', 'CARHR124110' => 'chi', 'CARHR203870' => 'chi', 'CARHR203880' => 'chi', 'CARHR203890' => 'chi', 'CARHR276880' => 'chi', 'Carub.0001s0346' => 'cru', 'Carub.0001s0347' => 'cru', 'Carub.0001s0607' => 'cru', 'Carub.0003s2768' => 'cru', 'Carub.0003s2769' => 'cru', 'Carub.0004s1178' => 'cru', 'Carub.0006s0806' => 'cru', 'Carub.0006s0807' => 'cru', 'Carub.0006s0808' => 'cru', 'Carub.0008s0501' => 'cru', 'Carub.0008s2379' => 'cru', 'Ca_08655_v3' => 'car', 'Ca_08922_v3' => 'car', 'Ca_08923_v3' => 'car', 'Ca_09119_v3' => 'car', 'Ca_09703_v3' => 'car', 'Ca_09705_v3' => 'car', 'Ca_09835_v3' => 'car', 'Ca_26403_v3' => 'car', 'Ca_30719_v3' => 'car', 'CBR_g17958' => 'cbr', 'CBR_g40516' => 'cbr', 'Cc00_g05350' => 'ccan', 'Cc01_g18690' => 'ccan', 'Cc03_g04830' => 'ccan', 'Cc03_g04850' => 'ccan', 'CDE02G4469' => 'cde', 'CDE06G0883' => 'cde', 'CDE06G1295' => 'cde', 'CDE06G1390' => 'cde', 'CDE07G0584' => 'cde', 'CDE07G1084' => 'cde', 'CDE08G1259' => 'cde', 'Cfa002341' => 'cfa', 'Cfa024337' => 'cfa', 'Ciclev10004749m.g' => 'ccl', 'Ciclev10006127m.g' => 'ccl', 'Ciclev10019720m.g' => 'ccl', 'Ciclev10022652m.g' => 'ccl', 'CiPaw.01G190400' => 'cil', 'CiPaw.01G190500' => 'cil', 'CiPaw.02G116400' => 'cil', 'CiPaw.02G116500' => 'cil', 'CiPaw.04G183000' => 'cil', 'CiPaw.04G183300' => 'cil', 'ClCG05G004610' => 'cla', 'ClCG05G004620' => 'cla', 'ClCG06G006730' => 'cla', 'ClCG06G006740' => 'cla', 'ClCG11G003690' => 'cla', 'COL.COLO4_08276' => 'col', 'COL.COLO4_08277' => 'col', 'COL.COLO4_15787' => 'col', 'COL.COLO4_15789' => 'col', 'Cpa.g.c44815' => 'cpa', 'Cpa.g.sc52.144' => 'cpa', 'Cpa.g.sc58.46' => 'cpa', 'Cpa.g.sc58.47' => 'cpa', 'Cre08.g360900' => 'cre', 'CsaV3_2G013030' => 'csa', 'CsaV3_2G013050' => 'csa', 'CsaV3_2G015620' => 'csa', 'CsaV3_3G012590' => 'csa', 'CsaV3_3G012600' => 'csa', 'CSS0001641' => 'camsi', 'CSS0008310' => 'camsi', 'CSS0013011' => 'camsi', 'CSS0017147' => 'camsi', 'CSS0022970' => 'camsi', 'CSS0025655' => 'camsi', 'CSS0028665' => 'camsi', 'CSS0029117' => 'camsi', 'CSS0032024' => 'camsi', 'CSS0039681' => 'camsi', 'CSS0046516' => 'camsi', 'CSS0050307' => 'camsi', 'DCAR_005871' => 'dca', 'DCAR_007342' => 'dca', 'DCAR_024228' => 'dca', 'DCAR_027277' => 'dca', 'DCAR_030718' => 'dca', 'Dinv20287' => 'din', 'Dinv22461' => 'din', 'Dinv22464' => 'din', 'Dinv29912' => 'din', 'Dinv29913' => 'din', 'Dinv34580' => 'din', 'Dinv34582' => 'din', 'Dinv44632' => 'din', 'Duzib052G0266' => 'dzi', 'Duzib133G0907' => 'dzi', 'Duzib133G1034' => 'dzi', 'Duzib138G0207' => 'dzi', 'Duzib138G0491' => 'dzi', 'Duzib151G0812' => 'dzi', 'Duzib151G1166' => 'dzi', 'Duzib168G0192' => 'dzi', 'Duzib211G0077' => 'dzi', 'Duzib212G0429' => 'dzi', 'Duzib212G0472' => 'dzi', 'ECA233G2617' => 'eca', 'ECA236G4188' => 'eca', 'ECA240G0936' => 'eca', 'ECA240G1129' => 'eca', 'ECA247G0623' => 'eca', 'EL10Ac5g10451' => 'bvu', 'EL10Ac5g10453' => 'bvu', 'EL10Ac5g10894' => 'bvu', 'Eucgr.H00192' => 'egr', 'Eucgr.H00193' => 'egr', 'Eucgr.H00194' => 'egr', 'Eucgr.J01562' => 'egr', 'Eucgr.K03301' => 'egr', 'FAN02G0632' => 'fan', 'FAN05G5378' => 'fan', 'FAN09G3247' => 'fan', 'FAN12G0435' => 'fan', 'FAN12G2426' => 'fan', 'FAN14G1707' => 'fan', 'FAN14G4725' => 'fan', 'FAN15G2071' => 'fan', 'FAN17G3065' => 'fan', 'FAN19G1376' => 'fan', 'FAN20G0354' => 'fan', 'FAN20G2429' => 'fan', 'FAN20G2658' => 'fan', 'FAN24G2343' => 'fan', 'FAN27G2362' => 'fan', 'FAN28G1765' => 'fan', 'FvH4_1g16020' => 'fve', 'FvH4_2g04890' => 'fve', 'FvH4_2g22270' => 'fve', 'FvH4_4g02630' => 'fve', 'FvH4_4g02640' => 'fve', 'FvH4_6g02650' => 'fve', 'Glyma.02G140600' => 'gma', 'Glyma.03G159900' => 'gma', 'Glyma.05G234800' => 'gma', 'Glyma.07G269600' => 'gma', 'Glyma.08G042300' => 'gma', 'Glyma.10G033500' => 'gma', 'Glyma.10G185200' => 'gma', 'Glyma.17G004300' => 'gma', 'Glyma.19G161900' => 'gma', 'Glyma.20G205100' => 'gma', 'Glyma.20G205200' => 'gma', 'Gohir.A01G139101' => 'ghi', 'Gohir.A02G035600' => 'ghi', 'Gohir.A02G117901' => 'ghi', 'Gohir.A07G210100' => 'ghi', 'Gohir.A07G210200' => 'ghi', 'Gohir.A08G061100' => 'ghi', 'Gohir.A09G223000' => 'ghi', 'Gohir.A09G223100' => 'ghi', 'Gohir.A10G113900' => 'ghi', 'Gohir.A10G114000' => 'ghi', 'Gohir.D02G042300' => 'ghi', 'Gohir.D07G216100' => 'ghi', 'Gohir.D07G216200' => 'ghi', 'Gohir.D08G070400' => 'ghi', 'Gohir.D09G225000' => 'ghi', 'Gohir.D09G225100' => 'ghi', 'Gohir.D10G152300' => 'ghi', 'Gohir.D10G153200' => 'ghi', 'Gohir.D11G133701' => 'ghi', 'Gorai.004G074100' => 'gra', 'Gorai.005G046800' => 'gra', 'Gorai.006G246500' => 'gra', 'Gorai.006G246600' => 'gra', 'Gorai.007G142900' => 'gra', 'Gorai.011G171000' => 'gra', 'Gorai.011G171100' => 'gra', 'Gorai.013G104300' => 'gra', 'Gorai.013G104400' => 'gra', 'GSVIVG01000754001' => 'vvi', 'GSVIVG01000756001' => 'vvi', 'GSVIVG01010903001' => 'vvi', 'GSVIVG01017623001' => 'vvi', 'GSVIVG01018113001' => 'vvi', 'GSVIVG01018116001' => 'vvi', 'GSVIVG01018118001' => 'vvi', 'HanXRQChr03g0076211' => 'han', 'HanXRQChr03g0092431' => 'han', 'HanXRQChr03g0092441' => 'han', 'HanXRQChr03g0092591' => 'han', 'HanXRQChr03g0092671' => 'han', 'HanXRQChr03g0092681' => 'han', 'HanXRQChr03g0092691' => 'han', 'HanXRQChr03g0092701' => 'han', 'HanXRQChr03g0092721' => 'han', 'HanXRQChr03g0092731' => 'han', 'HanXRQChr04g0113681' => 'han', 'HanXRQChr10g0281371' => 'han', 'HanXRQChr11g0337141' => 'han', 'HanXRQChr13g0424521' => 'han', 'HanXRQChr13g0424531' => 'han', 'HanXRQChr13g0424541' => 'han', 'HanXRQChr16g0498221' => 'han', 'Haze_04377' => 'cav', 'Haze_11298' => 'cav', 'Haze_24547' => 'cav', 'Haze_24550' => 'cav', 'Haze_26587' => 'cav', 'Hma1.2p1_0650F.1_g195410' => 'hma', 'Hma1.2p1_0893F.1_g233470' => 'hma', 'HPP92_006508' => 'vpl', 'HPP92_024780' => 'vpl', 'Hund02688' => 'sun', 'Hund09380' => 'sun', 'Hund09381' => 'sun', 'Hund09832' => 'sun', 'Hund09833' => 'sun', 'Hund11351' => 'sun', 'Hund11513' => 'sun', 'Lalb_Chr06g0162591' => 'lal', 'Lalb_Chr06g0162601' => 'lal', 'Lalb_Chr06g0169321' => 'lal', 'Lalb_Chr09g0330951' => 'lal', 'Lalb_Chr16g0387631' => 'lal', 'Lalb_Chr21g0306241' => 'lal', 'Lalb_Chr25g0290051' => 'lal', 'Lalb_Chr25g0290061' => 'lal', 'Lalb_Chr25g0290071' => 'lal', 'Lj1g0003876' => 'lja', 'Lj1P1207T36' => 'lonja', 'Lj2C1156G12' => 'lonja', 'Lj3A793G39' => 'lonja', 'Lj3C580G2' => 'lonja', 'Lj3C780G2' => 'lonja', 'Lj3C780T4' => 'lonja', 'Lj3C793G9' => 'lonja', 'Lj4g0012960' => 'lja', 'Lj5g0021252' => 'lja', 'Lj5g0021484' => 'lja', 'Lj5g0024528' => 'lja', 'Lj6A399T12' => 'lonja', 'Lj6A656G65' => 'lonja', 'Lsat_1_v5_gn_3_125500' => 'lsa', 'Lsat_1_v5_gn_3_125540' => 'lsa', 'Lsat_1_v5_gn_5_72701' => 'lsa', 'Lsat_1_v5_gn_8_91560' => 'lsa', 'Lsat_1_v5_gn_9_9640' => 'lsa', 'Manes.01G200600' => 'mes', 'Manes.01G200700' => 'mes', 'Manes.03G168900' => 'mes', 'Manes.03G169000' => 'mes', 'Manes.05G085801' => 'mes', 'Manes.05G086200' => 'mes', 'Manes.15G036700' => 'mes', 'Manes.15G036900' => 'mes', 'Mapoly0004s0172' => 'mpo', 'Mapoly0023s0001' => 'mpo', 'Mapoly0142s0012' => 'mpo', 'MBI01_g32854_MAGBIO' => 'mbi', 'MBI11_g24427_MAGBIO' => 'mbi', 'MBI11_g47319_MAGBIO' => 'mbi', 'MCO01G433' => 'mco', 'MD00G1187800' => 'mdo', 'MD04G1226500' => 'mdo', 'MD05G1203900' => 'mdo', 'MD10G1191100' => 'mdo', 'MD12G1243500' => 'mdo', 'MD13G1207000' => 'mdo', 'MD13G1207100' => 'mdo', 'MD16G1208600' => 'mdo', 'Medtr1g050352' => 'mtr', 'Medtr1g070385' => 'mtr', 'Medtr1g070450' => 'mtr', 'Medtr1g075200' => 'mtr', 'Medtr1g075250' => 'mtr', 'Medtr1g075260' => 'mtr', 'Medtr1g475250' => 'mtr', 'Medtr4g075450' => 'mtr', 'Medtr7g096300' => 'mtr', 'Medtr8g105110' => 'mtr', 'MELO3C006470.2' => 'cme', 'MELO3C006471.2' => 'cme', 'MELO3C020772.2' => 'cme', 'MELO3C026780.2' => 'cme', 'MELO3C026781.2' => 'cme', 'Migut.D00390' => 'egut', 'Migut.G00435' => 'egut', 'Migut.G00436' => 'egut', 'Migut.G00718' => 'egut', 'MSTRG.21891' => 'ama', 'MSTRG.26910' => 'ama', 'MSTRG.4099' => 'ama', 'MSTRG.9925' => 'ama', 'Nitab4.5_0000165g0010' => 'nta', 'Nitab4.5_0000209g0180' => 'nta', 'Nitab4.5_0000244g0440' => 'nta', 'Nitab4.5_0000525g0220' => 'nta', 'Nitab4.5_0001597g0020' => 'nta', 'Nitab4.5_0001878g0040' => 'nta', 'Nitab4.5_0001878g0060' => 'nta', 'Nitab4.5_0002838g0100' => 'nta', 'Nitab4.5_0002838g0120' => 'nta', 'Nitab4.5_0004798g0030' => 'nta', 'Nitab4.5_0005420g0010' => 'nta', 'Nitab4.5_0005507g0010' => 'nta', 'Nitab4.5_0005574g0020' => 'nta', 'Nitab4.5_0005838g0010' => 'nta', 'Nitab4.5_0010580g0020' => 'nta', 'Nn1g02599' => 'nnu', 'Nn1g02608' => 'nnu', 'Nn3g17742' => 'nnu', 'Nn3g19534' => 'nnu', 'Nn3g19535' => 'nnu', 'Oeu008790.1' => 'oeu', 'Oeu008792.1' => 'oeu', 'Oeu032590.1' => 'oeu', 'Oeu035349.1' => 'oeu', 'Oeu049791.1' => 'oeu', 'Os01g0774500' => 'osa', 'Os03g0628800' => 'osa', 'Os03g0798600' => 'osa', 'Os05g0508800' => 'osa', 'Peaxi162Scf00036g02018' => 'pax', 'Peaxi162Scf00578g00032' => 'pax', 'Peaxi162Scf00578g00317' => 'pax', 'Peaxi162Scf00785g00114' => 'pax', 'Peaxi162Scf00813g00119' => 'pax', 'Peaxi162Scf00906g00227' => 'pax', 'PGR004G0875' => 'pgr', 'PGR004G2424' => 'pgr', 'PGR031G1239' => 'pgr', 'PGR031G2474' => 'pgr', 'PGR044G0423' => 'pgr', 'PGSC0003DMG400001128' => 'stu', 'PGSC0003DMG400007336' => 'stu', 'PGSC0003DMG400016318' => 'stu', 'PGSC0003DMG400016319' => 'stu', 'PGSC0003DMG400018074' => 'stu', 'Phvul.001G157700' => 'pvu', 'Phvul.002G148550' => 'pvu', 'Phvul.002G320200' => 'pvu', 'Phvul.003G089200' => 'pvu', 'Phvul.007G126000' => 'pvu', 'Phvul.007G126100' => 'pvu', 'Phvul.007G178000' => 'pvu', 'Phvul.007G178200' => 'pvu', 'Potri.002G043000' => 'ptr', 'Potri.002G043200' => 'ptr', 'Potri.003G123750' => 'ptr', 'Potri.005G055401' => 'ptr', 'Potri.005G219700' => 'ptr', 'Potri.005G220000' => 'ptr', 'Potri.008G161901' => 'ptr', 'Potri.008G162000' => 'ptr', 'Potri.008G162400' => 'ptr', 'Potri.010G076900' => 'ptr', 'Pp3c12_9180' => 'ppa', 'Pp3c13_19770' => 'ppa', 'Pp3c14_22950' => 'ppa', 'Pp3c16_12160' => 'ppa', 'Pp3c27_7820' => 'ppa', 'Pp3c2_3490' => 'ppa', 'Pp3c3_23700' => 'ppa', 'Pp3c3_36520' => 'ppa', 'Pp3c4_15250' => 'ppa', 'PRCOL_00007002' => 'pco', 'Prupe.1G030600' => 'ppe', 'Prupe.1G030700' => 'ppe', 'Prupe.6G345200' => 'ppe', 'Prupe.8G230300' => 'ppe', 'Prupe.8G230500' => 'ppe', 'Psat3g059600' => 'psa', 'Psat5g200920' => 'psa', 'Psat6g056440' => 'psa', 'Psat6g057360' => 'psa', 'Psat6g134120' => 'psa', 'Psat6g134160' => 'psa', 'Psat7g008640' => 'psa', 'Psat7g185240' => 'psa', 'PSO017G1330' => 'pso', 'PSO063G6097' => 'pso', 'PSO170G0835' => 'pso', 'PSO170G2499' => 'pso', 'PSO210G5058' => 'pso', 'PSO210G6154' => 'pso', 'PSO585G0031' => 'pso', 'PSO832G0264' => 'pso', 'PSO832G4288' => 'pso', 'QL03p027355' => 'qlo', 'QL03p027430' => 'qlo', 'QL04p081380' => 'qlo', 'QL06p015642' => 'qlo', 'QL06p015650' => 'qlo', 'QL06p015686' => 'qlo', 'QL12p042927' => 'qlo', 'QL93p1863_0035' => 'qlo', 'RcHm_v2.0_Chr3g0450581' => 'rch', 'RcHm_v2.0_Chr4g0390371' => 'rch', 'RcHm_v2.0_Chr4g0390381' => 'rch', 'RcHm_v2.0_Chr4g0390491' => 'rch', 'RcHm_v2.0_Chr4g0390501' => 'rch', 'RcHm_v2.0_Chr6g0289231' => 'rch', 'Rhsim04G0190400' => 'rsi', 'Rhsim04G0190500' => 'rsi', 'Rhsim04G0190600' => 'rsi', 'Rhsim13G0031400' => 'rsi', 'Rhsim13G0165600' => 'rsi', 'RhsimUnG0114600' => 'rsi', 'RhsimUnG0114700' => 'rsi', 'Sabra02G0034800' => 'sbr', 'Sabra02G0035100' => 'sbr', 'Sabra05G0168600' => 'sbr', 'Sabra05G0168800' => 'sbr', 'Sabra08G0123700' => 'sbr', 'Sabra10G0031900' => 'sbr', 'Sabra13G0039000' => 'sbr', 'SalBow2G0782' => 'sbo', 'SalBow2G1403' => 'sbo', 'SalBow4G0074' => 'sbo', 'SalBow4G2635' => 'sbo', 'SalBow5G3010' => 'sbo', 'Sc05g0000870' => 'sci', 'Sc05g0000890' => 'sci', 'Sc13g0005000' => 'sci', 'Sc13g0005030' => 'sci', 'Sc19g0003790' => 'sci', 'Sc19g0003800' => 'sci', 'Sed0003467' => 'sed', 'Sed0009355' => 'sed', 'Sed0009894' => 'sed', 'Sed0011972' => 'sed', 'Sed0021483' => 'sed', 'Sed0021750' => 'sed', 'Sed0026279' => 'sed', 'SEGI_05312' => 'sgi', 'SEGI_10112' => 'sgi', 'SEGI_15835' => 'sgi', 'SEGI_30386' => 'sgi', 'SEGI_34122' => 'sgi', 'SEGI_35063' => 'sgi', 'SGA_v2.0_scaffold101G29794' => 'sas', 'SGA_v2.0_scaffold1G00573' => 'sas', 'SGA_v2.0_scaffold79G25637' => 'sas', 'SGA_v2.0_scaffold88G27283' => 'sas', 'SGA_v2.0_scaffold88G27285' => 'sas', 'SGA_v2.0_scaffold88G27331' => 'sas', 'SHI09937' => 'shi', 'SMO119G0302' => 'smo', 'SMO137G0231' => 'smo', 'SMO367G1151' => 'smo', 'Solyc02g082000.3' => 'sly', 'Solyc06g031670.3' => 'sly', 'Solyc06g053810.3' => 'sly', 'Solyc07g025457.1' => 'sly', 'Solyc08g059740.1' => 'sly', 'Solyc08g059750.3' => 'sly', 'Solyc09g083370.3' => 'sly', 'Solyc12g038950.3' => 'sly', 'Sopen02g026630' => 'spe', 'Sopen06g018930' => 'spe', 'Sopen06g018940' => 'spe', 'Sopen08g009460' => 'spe', 'Sopen09g032290' => 'spe', 'Sp1g03080' => 'spa', 'Sp1g03090' => 'spa', 'Sp1g05480' => 'spa', 'Sp2g07860' => 'spa', 'Sp2g08430' => 'spa', 'Sp2g08440' => 'spa', 'Sp2g26200' => 'spa', 'Sp4g13170' => 'spa', 'Sp6g33840' => 'spa', 'SpUn1204_0010' => 'spa', 'TAR365G0908' => 'tar', 'TAR381G1270' => 'tar', 'TAR381G1651' => 'tar', 'TAR625G1131' => 'tar', 'TAR633G0962' => 'tar', 'TAR633G1729' => 'tar', 'TAR633G1864' => 'tar', 'TAR636G0221' => 'tar', 'TAR636G0314' => 'tar', 'TAR636G3202' => 'tar', 'THA.LOC104800805' => 'tha', 'THA.LOC104801096' => 'tha', 'THA.LOC104801555' => 'tha', 'THA.LOC104808491' => 'tha', 'THA.LOC104808595' => 'tha', 'THA.LOC104815985' => 'tha', 'THA.LOC104822250' => 'tha', 'THA.LOC104826071' => 'tha', 'Thecc.01G265200' => 'tca', 'Thecc.01G265300' => 'tca', 'Thecc.01G265700' => 'tca', 'Thecc.03G109100' => 'tca', 'Thecc.04G245900' => 'tca', 'Thecc.04G246000' => 'tca', 'Thhalv10003334m.g' => 'esa', 'Thhalv10005508m.g' => 'esa', 'Thhalv10005643m.g' => 'esa', 'Thhalv10007316m.g' => 'esa', 'Thhalv10009006m.g' => 'esa', 'Thhalv10009309m.g' => 'esa', 'Thhalv10014917m.g' => 'esa', 'Thhalv10014919m.g' => 'esa', 'Thhalv10015393m.g' => 'esa', 'Thhalv10016515m.g' => 'esa', 'Thhalv10029242m.g' => 'esa', 'TPR.G16654' => 'tpr', 'TPR.G20589' => 'tpr', 'TPR.G23029' => 'tpr', 'TPR.G27731' => 'tpr', 'TPR.G28889' => 'tpr', 'TPR.G28899' => 'tpr', 'TPR.G30846' => 'tpr', 'TPR.G5452' => 'tpr', 'TPR.G5713' => 'tpr', 'TPR.G9046' => 'tpr', 'TPR.G9061' => 'tpr', 'TWI09G1075' => 'twi', 'TWI12G0806' => 'twi', 'TWI18G0108' => 'twi', 'TWI53G1361' => 'twi', 'TWI73G0185' => 'twi', 'TWI73G0427' => 'twi', 'unitig_37.g12001' => 'ugi', 'unitig_747.g21660' => 'ugi', 'unitig_748.g7232' => 'ugi', 'unitig_748.g7315' => 'ugi', 'unitig_85.g27262' => 'ugi', 'unitig_92.g28220' => 'ugi', 'vmacro02632' => 'vma', 'vmacro08410' => 'vma', 'vmacro08411' => 'vma', 'vmacro15407' => 'vma', 'VMungo0251G3619' => 'vmu', 'VMungo0720G1204' => 'vmu', 'VMungo0720G1918' => 'vmu', 'VMungo0720G2387' => 'vmu', 'VMungo0720G2961' => 'vmu', 'VMungo1215G2154' => 'vmu', 'VMungo1383G2411' => 'vmu', 'Zm00001eb051130' => 'zma', 'Zm00001eb116830' => 'zma', 'Zm00001eb116850' => 'zma', 'Zm00001eb151740' => 'zma', 'Zm00001eb292360' => 'zma', 'Zm00001eb301640' => 'zma' ) $gf_id = 'HOM05D000856' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000856' ) $data_identifier = 'HOM05D000856' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 13, 'ath' => (int) 10, 'atr' => (int) 1, 'acertr' => (int) 8, 'cqu' => (int) 6, 'bca' => (int) 21, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 11, 'car' => (int) 9, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 8, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 5, 'fan' => (int) 16, 'fve' => (int) 6, 'gma' => (int) 11, 'ghi' => (int) 19, 'gra' => (int) 9, 'vvi' => (int) 7, 'han' => (int) 17, 'cav' => (int) 5, 'hma' => (int) 2, 'vpl' => (int) 2, 'sun' => (int) 7, 'lal' => (int) 9, 'lja' => (int) 5, 'lonja' => (int) 9, 'lsa' => (int) 5, 'mes' => (int) 8, 'mpo' => (int) 3, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 10, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 15, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 9, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 9, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 6, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 5, 'spa' => (int) 10, 'tar' => (int) 10, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 11, 'tpr' => (int) 11, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 4, 'vmu' => (int) 7, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb301640' $species_info = array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ) $local_species = 'vpl' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000856', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p00010' => 'bna', 'A03p04160' => 'bna', 'A03p17160' => 'bna', 'A04p23370' => 'bna', 'A05p14860' => 'bna', 'A08p37020' => 'bna', 'A09p08050' => 'bna', 'A09p66800' => 'bna', 'A09p67940' => 'bna', 'A10p02680' => 'bna', 'A10p05320' => 'bna', 'Aa31LG1G20560' => 'aar', 'Aa31LG1G20610' => 'aar', 'Aa31LG1G7810' => 'aar', 'Aa31LG5G3590' => 'aar', 'Aa31LG5G6140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3819' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4683' => 'aag', 'Actinidia04480' => 'ach', 'Actinidia05466' => 'ach', 'Actinidia08445' => 'ach', 'Actinidia21170' => 'ach', 'Actinidia24812' => 'ach', 'Actinidia24951' => 'ach', 'Actinidia40088' => 'ach', 'Ah.02g111660' => 'amhyb', 'Ah.11g048900' => 'amhyb', 'Ah.11g049910' => 'amhyb', 'AL1G13870' => 'aly', 'AL1G13880' => 'aly', 'AL1G16760' => 'aly', 'AL390U10020' => 'aly', 'AL4G25520' => 'aly', 'AL6G19890' => 'aly', 'AL6G19900' => 'aly', 'AL6G19910' => 'aly', 'AL8G40100' => 'aly', 'Aqoxy2G03562' => 'aox', 'Aqoxy5G00316' => 'aox', 'Aqoxy5G00926' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1628KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1H403S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2FU6SJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.882I6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8YRY2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YN1SN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AF70II' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZA8L1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F916KL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHRD8H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KTZ8QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S22EMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8M29T' => 'arhy', 'AT1G04270' => 'ath', 'AT1G04280' => 'ath', 'AT1G06750' => 'ath', 'AT1G33850' => 'ath', 'AT2G30630' => 'ath', 'AT5G09490' => 'ath', 'AT5G09500' => 'ath', 'AT5G09510' => 'ath', 'AT5G43640' => 'ath', 'AT5G63070' => 'ath', 'ATR0605G315' => 'atr', 'Atru.chr11.175' => 'acertr', 'Atru.chr11.653' => 'acertr', 'Atru.chr3.1616' => 'acertr', 'Atru.chr4.2230' => 'acertr', 'Atru.chr4.2232' => 'acertr', 'Atru.chr5.1598' => 'acertr', 'Atru.chr5.1600' => 'acertr', 'Atru.chr5.2188' => 'acertr', 'AUR62008326' => 'cqu', 'AUR62011922' => 'cqu', 'AUR62011924' => 'cqu', 'AUR62021771' => 'cqu', 'AUR62032237' => 'cqu', 'AUR62032240' => 'cqu', 'BcaB01g05572' => 'bca', 'BcaB02g10337' => 'bca', 'BcaB04g19944' => 'bca', 'BcaB05g21548' => 'bca', 'BcaB05g21549' => 'bca', 'BcaB05g23227' => 'bca', 'BcaB06g26256' => 'bca', 'BcaB06g26257' => 'bca', 'BcaB06g28379' => 'bca', 'BcaC02g11159' => 'bca', 'BcaC03g13258' => 'bca', 'BcaC03g13259' => 'bca', 'BcaC05g24456' => 'bca', 'BcaC05g24457' => 'bca', 'BcaC07g36922' => 'bca', 'BcaC07g36923' => 'bca', 'BcaC07g42050' => 'bca', 'BcaC07g42176' => 'bca', 'BcaC07g42195' => 'bca', 'BcaC07g42196' => 'bca', 'BcaNung06674' => 'bca', 'BolC2t06351H' => 'bol', 'BolC2t06352H' => 'bol', 'BolC3t12993H' => 'bol', 'BolC4t23525H' => 'bol', 'BolC4t27475H' => 'bol', 'BolC5t29025H' => 'bol', 'BolC5t29026H' => 'bol', 'BolC8t46898H' => 'bol', 'BolC8t46899H' => 'bol', 'BolC8t52630H' => 'bol', 'BolC8t52765H' => 'bol', 'BolC9t53824H' => 'bol', 'BraA03t09760Z' => 'bra', 'BraA03t10990Z' => 'bra', 'BraA05t20413Z' => 'bra', 'BraA08t35602Z' => 'bra', 'BraA09t36458Z' => 'bra', 'BraA09t42018Z' => 'bra', 'BraA09t42129Z' => 'bra', 'BraA10t42536Z' => 'bra', 'BraA10t42537Z' => 'bra', 'C01p10690' => 'bna', 'C02p03890' => 'bna', 'C02p03900' => 'bna', 'C03p04620' => 'bna', 'C04p19870' => 'bna', 'C04p59670' => 'bna', 'C05p02460' => 'bna', 'C05p02470' => 'bna', 'C08p00980' => 'bna', 'C08p00990' => 'bna', 'C08p51030' => 'bna', 'C08p52360' => 'bna', 'C09p09120' => 'bna', 'CAN.G19.15' => 'can', 'CAN.G251.10' => 'can', 'CAN.G251.9' => 'can', 'CAN.G398.24' => 'can', 'CAN.G410.32' => 'can', 'CAN.G881.2' => 'can', 'CANSAT01G3025' => 'cansat', 'CANSAT78G1211' => 'cansat', 'CANSAT78G1218' => 'cansat', 'CANSAT78G1521' => 'cansat', 'CANSAT78G1670' => 'cansat', 'CARHR003600' => 'chi', 'CARHR003610' => 'chi', 'CARHR006290' => 'chi', 'CARHR006430' => 'chi', 'CARHR124110' => 'chi', 'CARHR203870' => 'chi', 'CARHR203880' => 'chi', 'CARHR203890' => 'chi', 'CARHR276880' => 'chi', 'Carub.0001s0346' => 'cru', 'Carub.0001s0347' => 'cru', 'Carub.0001s0607' => 'cru', 'Carub.0003s2768' => 'cru', 'Carub.0003s2769' => 'cru', 'Carub.0004s1178' => 'cru', 'Carub.0006s0806' => 'cru', 'Carub.0006s0807' => 'cru', 'Carub.0006s0808' => 'cru', 'Carub.0008s0501' => 'cru', 'Carub.0008s2379' => 'cru', 'Ca_08655_v3' => 'car', 'Ca_08922_v3' => 'car', 'Ca_08923_v3' => 'car', 'Ca_09119_v3' => 'car', 'Ca_09703_v3' => 'car', 'Ca_09705_v3' => 'car', 'Ca_09835_v3' => 'car', 'Ca_26403_v3' => 'car', 'Ca_30719_v3' => 'car', 'CBR_g17958' => 'cbr', 'CBR_g40516' => 'cbr', 'Cc00_g05350' => 'ccan', 'Cc01_g18690' => 'ccan', 'Cc03_g04830' => 'ccan', 'Cc03_g04850' => 'ccan', 'CDE02G4469' => 'cde', 'CDE06G0883' => 'cde', 'CDE06G1295' => 'cde', 'CDE06G1390' => 'cde', 'CDE07G0584' => 'cde', 'CDE07G1084' => 'cde', 'CDE08G1259' => 'cde', 'Cfa002341' => 'cfa', 'Cfa024337' => 'cfa', 'Ciclev10004749m.g' => 'ccl', 'Ciclev10006127m.g' => 'ccl', 'Ciclev10019720m.g' => 'ccl', 'Ciclev10022652m.g' => 'ccl', 'CiPaw.01G190400' => 'cil', 'CiPaw.01G190500' => 'cil', 'CiPaw.02G116400' => 'cil', 'CiPaw.02G116500' => 'cil', 'CiPaw.04G183000' => 'cil', 'CiPaw.04G183300' => 'cil', 'ClCG05G004610' => 'cla', 'ClCG05G004620' => 'cla', 'ClCG06G006730' => 'cla', 'ClCG06G006740' => 'cla', 'ClCG11G003690' => 'cla', 'COL.COLO4_08276' => 'col', 'COL.COLO4_08277' => 'col', 'COL.COLO4_15787' => 'col', 'COL.COLO4_15789' => 'col', 'Cpa.g.c44815' => 'cpa', 'Cpa.g.sc52.144' => 'cpa', 'Cpa.g.sc58.46' => 'cpa', 'Cpa.g.sc58.47' => 'cpa', 'Cre08.g360900' => 'cre', 'CsaV3_2G013030' => 'csa', 'CsaV3_2G013050' => 'csa', 'CsaV3_2G015620' => 'csa', 'CsaV3_3G012590' => 'csa', 'CsaV3_3G012600' => 'csa', 'CSS0001641' => 'camsi', 'CSS0008310' => 'camsi', 'CSS0013011' => 'camsi', 'CSS0017147' => 'camsi', 'CSS0022970' => 'camsi', 'CSS0025655' => 'camsi', 'CSS0028665' => 'camsi', 'CSS0029117' => 'camsi', 'CSS0032024' => 'camsi', 'CSS0039681' => 'camsi', 'CSS0046516' => 'camsi', 'CSS0050307' => 'camsi', 'DCAR_005871' => 'dca', 'DCAR_007342' => 'dca', 'DCAR_024228' => 'dca', 'DCAR_027277' => 'dca', 'DCAR_030718' => 'dca', 'Dinv20287' => 'din', 'Dinv22461' => 'din', 'Dinv22464' => 'din', 'Dinv29912' => 'din', 'Dinv29913' => 'din', 'Dinv34580' => 'din', 'Dinv34582' => 'din', 'Dinv44632' => 'din', 'Duzib052G0266' => 'dzi', 'Duzib133G0907' => 'dzi', 'Duzib133G1034' => 'dzi', 'Duzib138G0207' => 'dzi', 'Duzib138G0491' => 'dzi', 'Duzib151G0812' => 'dzi', 'Duzib151G1166' => 'dzi', 'Duzib168G0192' => 'dzi', 'Duzib211G0077' => 'dzi', 'Duzib212G0429' => 'dzi', 'Duzib212G0472' => 'dzi', 'ECA233G2617' => 'eca', 'ECA236G4188' => 'eca', 'ECA240G0936' => 'eca', 'ECA240G1129' => 'eca', 'ECA247G0623' => 'eca', 'EL10Ac5g10451' => 'bvu', 'EL10Ac5g10453' => 'bvu', 'EL10Ac5g10894' => 'bvu', 'Eucgr.H00192' => 'egr', 'Eucgr.H00193' => 'egr', 'Eucgr.H00194' => 'egr', 'Eucgr.J01562' => 'egr', 'Eucgr.K03301' => 'egr', 'FAN02G0632' => 'fan', 'FAN05G5378' => 'fan', 'FAN09G3247' => 'fan', 'FAN12G0435' => 'fan', 'FAN12G2426' => 'fan', 'FAN14G1707' => 'fan', 'FAN14G4725' => 'fan', 'FAN15G2071' => 'fan', 'FAN17G3065' => 'fan', 'FAN19G1376' => 'fan', 'FAN20G0354' => 'fan', 'FAN20G2429' => 'fan', 'FAN20G2658' => 'fan', 'FAN24G2343' => 'fan', 'FAN27G2362' => 'fan', 'FAN28G1765' => 'fan', 'FvH4_1g16020' => 'fve', 'FvH4_2g04890' => 'fve', 'FvH4_2g22270' => 'fve', 'FvH4_4g02630' => 'fve', 'FvH4_4g02640' => 'fve', 'FvH4_6g02650' => 'fve', 'Glyma.02G140600' => 'gma', 'Glyma.03G159900' => 'gma', 'Glyma.05G234800' => 'gma', 'Glyma.07G269600' => 'gma', 'Glyma.08G042300' => 'gma', 'Glyma.10G033500' => 'gma', 'Glyma.10G185200' => 'gma', 'Glyma.17G004300' => 'gma', 'Glyma.19G161900' => 'gma', 'Glyma.20G205100' => 'gma', 'Glyma.20G205200' => 'gma', 'Gohir.A01G139101' => 'ghi', 'Gohir.A02G035600' => 'ghi', 'Gohir.A02G117901' => 'ghi', 'Gohir.A07G210100' => 'ghi', 'Gohir.A07G210200' => 'ghi', 'Gohir.A08G061100' => 'ghi', 'Gohir.A09G223000' => 'ghi', 'Gohir.A09G223100' => 'ghi', 'Gohir.A10G113900' => 'ghi', 'Gohir.A10G114000' => 'ghi', 'Gohir.D02G042300' => 'ghi', 'Gohir.D07G216100' => 'ghi', 'Gohir.D07G216200' => 'ghi', 'Gohir.D08G070400' => 'ghi', 'Gohir.D09G225000' => 'ghi', 'Gohir.D09G225100' => 'ghi', 'Gohir.D10G152300' => 'ghi', 'Gohir.D10G153200' => 'ghi', 'Gohir.D11G133701' => 'ghi', 'Gorai.004G074100' => 'gra', 'Gorai.005G046800' => 'gra', 'Gorai.006G246500' => 'gra', 'Gorai.006G246600' => 'gra', 'Gorai.007G142900' => 'gra', 'Gorai.011G171000' => 'gra', 'Gorai.011G171100' => 'gra', 'Gorai.013G104300' => 'gra', 'Gorai.013G104400' => 'gra', 'GSVIVG01000754001' => 'vvi', 'GSVIVG01000756001' => 'vvi', 'GSVIVG01010903001' => 'vvi', 'GSVIVG01017623001' => 'vvi', 'GSVIVG01018113001' => 'vvi', 'GSVIVG01018116001' => 'vvi', 'GSVIVG01018118001' => 'vvi', 'HanXRQChr03g0076211' => 'han', 'HanXRQChr03g0092431' => 'han', 'HanXRQChr03g0092441' => 'han', 'HanXRQChr03g0092591' => 'han', 'HanXRQChr03g0092671' => 'han', 'HanXRQChr03g0092681' => 'han', 'HanXRQChr03g0092691' => 'han', 'HanXRQChr03g0092701' => 'han', 'HanXRQChr03g0092721' => 'han', 'HanXRQChr03g0092731' => 'han', 'HanXRQChr04g0113681' => 'han', 'HanXRQChr10g0281371' => 'han', 'HanXRQChr11g0337141' => 'han', 'HanXRQChr13g0424521' => 'han', 'HanXRQChr13g0424531' => 'han', 'HanXRQChr13g0424541' => 'han', 'HanXRQChr16g0498221' => 'han', 'Haze_04377' => 'cav', 'Haze_11298' => 'cav', 'Haze_24547' => 'cav', 'Haze_24550' => 'cav', 'Haze_26587' => 'cav', 'Hma1.2p1_0650F.1_g195410' => 'hma', 'Hma1.2p1_0893F.1_g233470' => 'hma', 'HPP92_006508' => 'vpl', 'HPP92_024780' => 'vpl', 'Hund02688' => 'sun', 'Hund09380' => 'sun', 'Hund09381' => 'sun', 'Hund09832' => 'sun', 'Hund09833' => 'sun', 'Hund11351' => 'sun', 'Hund11513' => 'sun', 'Lalb_Chr06g0162591' => 'lal', 'Lalb_Chr06g0162601' => 'lal', 'Lalb_Chr06g0169321' => 'lal', 'Lalb_Chr09g0330951' => 'lal', 'Lalb_Chr16g0387631' => 'lal', 'Lalb_Chr21g0306241' => 'lal', 'Lalb_Chr25g0290051' => 'lal', 'Lalb_Chr25g0290061' => 'lal', 'Lalb_Chr25g0290071' => 'lal', 'Lj1g0003876' => 'lja', 'Lj1P1207T36' => 'lonja', 'Lj2C1156G12' => 'lonja', 'Lj3A793G39' => 'lonja', 'Lj3C580G2' => 'lonja', 'Lj3C780G2' => 'lonja', 'Lj3C780T4' => 'lonja', 'Lj3C793G9' => 'lonja', 'Lj4g0012960' => 'lja', 'Lj5g0021252' => 'lja', 'Lj5g0021484' => 'lja', 'Lj5g0024528' => 'lja', 'Lj6A399T12' => 'lonja', 'Lj6A656G65' => 'lonja', 'Lsat_1_v5_gn_3_125500' => 'lsa', 'Lsat_1_v5_gn_3_125540' => 'lsa', 'Lsat_1_v5_gn_5_72701' => 'lsa', 'Lsat_1_v5_gn_8_91560' => 'lsa', 'Lsat_1_v5_gn_9_9640' => 'lsa', 'Manes.01G200600' => 'mes', 'Manes.01G200700' => 'mes', 'Manes.03G168900' => 'mes', 'Manes.03G169000' => 'mes', 'Manes.05G085801' => 'mes', 'Manes.05G086200' => 'mes', 'Manes.15G036700' => 'mes', 'Manes.15G036900' => 'mes', 'Mapoly0004s0172' => 'mpo', 'Mapoly0023s0001' => 'mpo', 'Mapoly0142s0012' => 'mpo', 'MBI01_g32854_MAGBIO' => 'mbi', 'MBI11_g24427_MAGBIO' => 'mbi', 'MBI11_g47319_MAGBIO' => 'mbi', 'MCO01G433' => 'mco', 'MD00G1187800' => 'mdo', 'MD04G1226500' => 'mdo', 'MD05G1203900' => 'mdo', 'MD10G1191100' => 'mdo', 'MD12G1243500' => 'mdo', 'MD13G1207000' => 'mdo', 'MD13G1207100' => 'mdo', 'MD16G1208600' => 'mdo', 'Medtr1g050352' => 'mtr', 'Medtr1g070385' => 'mtr', 'Medtr1g070450' => 'mtr', 'Medtr1g075200' => 'mtr', 'Medtr1g075250' => 'mtr', 'Medtr1g075260' => 'mtr', 'Medtr1g475250' => 'mtr', 'Medtr4g075450' => 'mtr', 'Medtr7g096300' => 'mtr', 'Medtr8g105110' => 'mtr', 'MELO3C006470.2' => 'cme', 'MELO3C006471.2' => 'cme', 'MELO3C020772.2' => 'cme', 'MELO3C026780.2' => 'cme', 'MELO3C026781.2' => 'cme', 'Migut.D00390' => 'egut', 'Migut.G00435' => 'egut', 'Migut.G00436' => 'egut', 'Migut.G00718' => 'egut', 'MSTRG.21891' => 'ama', 'MSTRG.26910' => 'ama', 'MSTRG.4099' => 'ama', 'MSTRG.9925' => 'ama', 'Nitab4.5_0000165g0010' => 'nta', 'Nitab4.5_0000209g0180' => 'nta', 'Nitab4.5_0000244g0440' => 'nta', 'Nitab4.5_0000525g0220' => 'nta', 'Nitab4.5_0001597g0020' => 'nta', 'Nitab4.5_0001878g0040' => 'nta', 'Nitab4.5_0001878g0060' => 'nta', 'Nitab4.5_0002838g0100' => 'nta', 'Nitab4.5_0002838g0120' => 'nta', 'Nitab4.5_0004798g0030' => 'nta', 'Nitab4.5_0005420g0010' => 'nta', 'Nitab4.5_0005507g0010' => 'nta', 'Nitab4.5_0005574g0020' => 'nta', 'Nitab4.5_0005838g0010' => 'nta', 'Nitab4.5_0010580g0020' => 'nta', 'Nn1g02599' => 'nnu', 'Nn1g02608' => 'nnu', 'Nn3g17742' => 'nnu', 'Nn3g19534' => 'nnu', 'Nn3g19535' => 'nnu', 'Oeu008790.1' => 'oeu', 'Oeu008792.1' => 'oeu', 'Oeu032590.1' => 'oeu', 'Oeu035349.1' => 'oeu', 'Oeu049791.1' => 'oeu', 'Os01g0774500' => 'osa', 'Os03g0628800' => 'osa', 'Os03g0798600' => 'osa', 'Os05g0508800' => 'osa', 'Peaxi162Scf00036g02018' => 'pax', 'Peaxi162Scf00578g00032' => 'pax', 'Peaxi162Scf00578g00317' => 'pax', 'Peaxi162Scf00785g00114' => 'pax', 'Peaxi162Scf00813g00119' => 'pax', 'Peaxi162Scf00906g00227' => 'pax', 'PGR004G0875' => 'pgr', 'PGR004G2424' => 'pgr', 'PGR031G1239' => 'pgr', 'PGR031G2474' => 'pgr', 'PGR044G0423' => 'pgr', 'PGSC0003DMG400001128' => 'stu', 'PGSC0003DMG400007336' => 'stu', 'PGSC0003DMG400016318' => 'stu', 'PGSC0003DMG400016319' => 'stu', 'PGSC0003DMG400018074' => 'stu', 'Phvul.001G157700' => 'pvu', 'Phvul.002G148550' => 'pvu', 'Phvul.002G320200' => 'pvu', 'Phvul.003G089200' => 'pvu', 'Phvul.007G126000' => 'pvu', 'Phvul.007G126100' => 'pvu', 'Phvul.007G178000' => 'pvu', 'Phvul.007G178200' => 'pvu', 'Potri.002G043000' => 'ptr', 'Potri.002G043200' => 'ptr', 'Potri.003G123750' => 'ptr', 'Potri.005G055401' => 'ptr', 'Potri.005G219700' => 'ptr', 'Potri.005G220000' => 'ptr', 'Potri.008G161901' => 'ptr', 'Potri.008G162000' => 'ptr', 'Potri.008G162400' => 'ptr', 'Potri.010G076900' => 'ptr', 'Pp3c12_9180' => 'ppa', 'Pp3c13_19770' => 'ppa', 'Pp3c14_22950' => 'ppa', 'Pp3c16_12160' => 'ppa', 'Pp3c27_7820' => 'ppa', 'Pp3c2_3490' => 'ppa', 'Pp3c3_23700' => 'ppa', 'Pp3c3_36520' => 'ppa', 'Pp3c4_15250' => 'ppa', 'PRCOL_00007002' => 'pco', 'Prupe.1G030600' => 'ppe', 'Prupe.1G030700' => 'ppe', 'Prupe.6G345200' => 'ppe', 'Prupe.8G230300' => 'ppe', 'Prupe.8G230500' => 'ppe', 'Psat3g059600' => 'psa', 'Psat5g200920' => 'psa', 'Psat6g056440' => 'psa', 'Psat6g057360' => 'psa', 'Psat6g134120' => 'psa', 'Psat6g134160' => 'psa', 'Psat7g008640' => 'psa', 'Psat7g185240' => 'psa', 'PSO017G1330' => 'pso', 'PSO063G6097' => 'pso', 'PSO170G0835' => 'pso', 'PSO170G2499' => 'pso', 'PSO210G5058' => 'pso', 'PSO210G6154' => 'pso', 'PSO585G0031' => 'pso', 'PSO832G0264' => 'pso', 'PSO832G4288' => 'pso', 'QL03p027355' => 'qlo', 'QL03p027430' => 'qlo', 'QL04p081380' => 'qlo', 'QL06p015642' => 'qlo', 'QL06p015650' => 'qlo', 'QL06p015686' => 'qlo', 'QL12p042927' => 'qlo', 'QL93p1863_0035' => 'qlo', 'RcHm_v2.0_Chr3g0450581' => 'rch', 'RcHm_v2.0_Chr4g0390371' => 'rch', 'RcHm_v2.0_Chr4g0390381' => 'rch', 'RcHm_v2.0_Chr4g0390491' => 'rch', 'RcHm_v2.0_Chr4g0390501' => 'rch', 'RcHm_v2.0_Chr6g0289231' => 'rch', 'Rhsim04G0190400' => 'rsi', 'Rhsim04G0190500' => 'rsi', 'Rhsim04G0190600' => 'rsi', 'Rhsim13G0031400' => 'rsi', 'Rhsim13G0165600' => 'rsi', 'RhsimUnG0114600' => 'rsi', 'RhsimUnG0114700' => 'rsi', 'Sabra02G0034800' => 'sbr', 'Sabra02G0035100' => 'sbr', 'Sabra05G0168600' => 'sbr', 'Sabra05G0168800' => 'sbr', 'Sabra08G0123700' => 'sbr', 'Sabra10G0031900' => 'sbr', 'Sabra13G0039000' => 'sbr', 'SalBow2G0782' => 'sbo', 'SalBow2G1403' => 'sbo', 'SalBow4G0074' => 'sbo', 'SalBow4G2635' => 'sbo', 'SalBow5G3010' => 'sbo', 'Sc05g0000870' => 'sci', 'Sc05g0000890' => 'sci', 'Sc13g0005000' => 'sci', 'Sc13g0005030' => 'sci', 'Sc19g0003790' => 'sci', 'Sc19g0003800' => 'sci', 'Sed0003467' => 'sed', 'Sed0009355' => 'sed', 'Sed0009894' => 'sed', 'Sed0011972' => 'sed', 'Sed0021483' => 'sed', 'Sed0021750' => 'sed', 'Sed0026279' => 'sed', 'SEGI_05312' => 'sgi', 'SEGI_10112' => 'sgi', 'SEGI_15835' => 'sgi', 'SEGI_30386' => 'sgi', 'SEGI_34122' => 'sgi', 'SEGI_35063' => 'sgi', 'SGA_v2.0_scaffold101G29794' => 'sas', 'SGA_v2.0_scaffold1G00573' => 'sas', 'SGA_v2.0_scaffold79G25637' => 'sas', 'SGA_v2.0_scaffold88G27283' => 'sas', 'SGA_v2.0_scaffold88G27285' => 'sas', 'SGA_v2.0_scaffold88G27331' => 'sas', 'SHI09937' => 'shi', 'SMO119G0302' => 'smo', 'SMO137G0231' => 'smo', 'SMO367G1151' => 'smo', 'Solyc02g082000.3' => 'sly', 'Solyc06g031670.3' => 'sly', 'Solyc06g053810.3' => 'sly', 'Solyc07g025457.1' => 'sly', 'Solyc08g059740.1' => 'sly', 'Solyc08g059750.3' => 'sly', 'Solyc09g083370.3' => 'sly', 'Solyc12g038950.3' => 'sly', 'Sopen02g026630' => 'spe', 'Sopen06g018930' => 'spe', 'Sopen06g018940' => 'spe', 'Sopen08g009460' => 'spe', 'Sopen09g032290' => 'spe', 'Sp1g03080' => 'spa', 'Sp1g03090' => 'spa', 'Sp1g05480' => 'spa', 'Sp2g07860' => 'spa', 'Sp2g08430' => 'spa', 'Sp2g08440' => 'spa', 'Sp2g26200' => 'spa', 'Sp4g13170' => 'spa', 'Sp6g33840' => 'spa', 'SpUn1204_0010' => 'spa', 'TAR365G0908' => 'tar', 'TAR381G1270' => 'tar', 'TAR381G1651' => 'tar', 'TAR625G1131' => 'tar', 'TAR633G0962' => 'tar', 'TAR633G1729' => 'tar', 'TAR633G1864' => 'tar', 'TAR636G0221' => 'tar', 'TAR636G0314' => 'tar', 'TAR636G3202' => 'tar', 'THA.LOC104800805' => 'tha', 'THA.LOC104801096' => 'tha', 'THA.LOC104801555' => 'tha', 'THA.LOC104808491' => 'tha', 'THA.LOC104808595' => 'tha', 'THA.LOC104815985' => 'tha', 'THA.LOC104822250' => 'tha', 'THA.LOC104826071' => 'tha', 'Thecc.01G265200' => 'tca', 'Thecc.01G265300' => 'tca', 'Thecc.01G265700' => 'tca', 'Thecc.03G109100' => 'tca', 'Thecc.04G245900' => 'tca', 'Thecc.04G246000' => 'tca', 'Thhalv10003334m.g' => 'esa', 'Thhalv10005508m.g' => 'esa', 'Thhalv10005643m.g' => 'esa', 'Thhalv10007316m.g' => 'esa', 'Thhalv10009006m.g' => 'esa', 'Thhalv10009309m.g' => 'esa', 'Thhalv10014917m.g' => 'esa', 'Thhalv10014919m.g' => 'esa', 'Thhalv10015393m.g' => 'esa', 'Thhalv10016515m.g' => 'esa', 'Thhalv10029242m.g' => 'esa', 'TPR.G16654' => 'tpr', 'TPR.G20589' => 'tpr', 'TPR.G23029' => 'tpr', 'TPR.G27731' => 'tpr', 'TPR.G28889' => 'tpr', 'TPR.G28899' => 'tpr', 'TPR.G30846' => 'tpr', 'TPR.G5452' => 'tpr', 'TPR.G5713' => 'tpr', 'TPR.G9046' => 'tpr', 'TPR.G9061' => 'tpr', 'TWI09G1075' => 'twi', 'TWI12G0806' => 'twi', 'TWI18G0108' => 'twi', 'TWI53G1361' => 'twi', 'TWI73G0185' => 'twi', 'TWI73G0427' => 'twi', 'unitig_37.g12001' => 'ugi', 'unitig_747.g21660' => 'ugi', 'unitig_748.g7232' => 'ugi', 'unitig_748.g7315' => 'ugi', 'unitig_85.g27262' => 'ugi', 'unitig_92.g28220' => 'ugi', 'vmacro02632' => 'vma', 'vmacro08410' => 'vma', 'vmacro08411' => 'vma', 'vmacro15407' => 'vma', 'VMungo0251G3619' => 'vmu', 'VMungo0720G1204' => 'vmu', 'VMungo0720G1918' => 'vmu', 'VMungo0720G2387' => 'vmu', 'VMungo0720G2961' => 'vmu', 'VMungo1215G2154' => 'vmu', 'VMungo1383G2411' => 'vmu', 'Zm00001eb051130' => 'zma', 'Zm00001eb116830' => 'zma', 'Zm00001eb116850' => 'zma', 'Zm00001eb151740' => 'zma', 'Zm00001eb292360' => 'zma', 'Zm00001eb301640' => 'zma' ), 'gf_id' => 'HOM05D000856', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000856' ), 'data_identifier' => 'HOM05D000856', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000856', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p00010' => 'bna', 'A03p04160' => 'bna', 'A03p17160' => 'bna', 'A04p23370' => 'bna', 'A05p14860' => 'bna', 'A08p37020' => 'bna', 'A09p08050' => 'bna', 'A09p66800' => 'bna', 'A09p67940' => 'bna', 'A10p02680' => 'bna', 'A10p05320' => 'bna', 'Aa31LG1G20560' => 'aar', 'Aa31LG1G20610' => 'aar', 'Aa31LG1G7810' => 'aar', 'Aa31LG5G3590' => 'aar', 'Aa31LG5G6140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3819' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4683' => 'aag', 'Actinidia04480' => 'ach', 'Actinidia05466' => 'ach', 'Actinidia08445' => 'ach', 'Actinidia21170' => 'ach', 'Actinidia24812' => 'ach', 'Actinidia24951' => 'ach', 'Actinidia40088' => 'ach', 'Ah.02g111660' => 'amhyb', 'Ah.11g048900' => 'amhyb', 'Ah.11g049910' => 'amhyb', 'AL1G13870' => 'aly', 'AL1G13880' => 'aly', 'AL1G16760' => 'aly', 'AL390U10020' => 'aly', 'AL4G25520' => 'aly', 'AL6G19890' => 'aly', 'AL6G19900' => 'aly', 'AL6G19910' => 'aly', 'AL8G40100' => 'aly', 'Aqoxy2G03562' => 'aox', 'Aqoxy5G00316' => 'aox', 'Aqoxy5G00926' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1628KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1H403S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2FU6SJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.882I6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8YRY2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YN1SN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AF70II' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZA8L1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F916KL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHRD8H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KTZ8QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S22EMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8M29T' => 'arhy', 'AT1G04270' => 'ath', 'AT1G04280' => 'ath', 'AT1G06750' => 'ath', 'AT1G33850' => 'ath', 'AT2G30630' => 'ath', 'AT5G09490' => 'ath', 'AT5G09500' => 'ath', 'AT5G09510' => 'ath', 'AT5G43640' => 'ath', 'AT5G63070' => 'ath', 'ATR0605G315' => 'atr', 'Atru.chr11.175' => 'acertr', 'Atru.chr11.653' => 'acertr', 'Atru.chr3.1616' => 'acertr', 'Atru.chr4.2230' => 'acertr', 'Atru.chr4.2232' => 'acertr', 'Atru.chr5.1598' => 'acertr', 'Atru.chr5.1600' => 'acertr', 'Atru.chr5.2188' => 'acertr', 'AUR62008326' => 'cqu', 'AUR62011922' => 'cqu', 'AUR62011924' => 'cqu', 'AUR62021771' => 'cqu', 'AUR62032237' => 'cqu', 'AUR62032240' => 'cqu', 'BcaB01g05572' => 'bca', 'BcaB02g10337' => 'bca', 'BcaB04g19944' => 'bca', 'BcaB05g21548' => 'bca', 'BcaB05g21549' => 'bca', 'BcaB05g23227' => 'bca', 'BcaB06g26256' => 'bca', 'BcaB06g26257' => 'bca', 'BcaB06g28379' => 'bca', 'BcaC02g11159' => 'bca', 'BcaC03g13258' => 'bca', 'BcaC03g13259' => 'bca', 'BcaC05g24456' => 'bca', 'BcaC05g24457' => 'bca', 'BcaC07g36922' => 'bca', 'BcaC07g36923' => 'bca', 'BcaC07g42050' => 'bca', 'BcaC07g42176' => 'bca', 'BcaC07g42195' => 'bca', 'BcaC07g42196' => 'bca', 'BcaNung06674' => 'bca', 'BolC2t06351H' => 'bol', 'BolC2t06352H' => 'bol', 'BolC3t12993H' => 'bol', 'BolC4t23525H' => 'bol', 'BolC4t27475H' => 'bol', 'BolC5t29025H' => 'bol', 'BolC5t29026H' => 'bol', 'BolC8t46898H' => 'bol', 'BolC8t46899H' => 'bol', 'BolC8t52630H' => 'bol', 'BolC8t52765H' => 'bol', 'BolC9t53824H' => 'bol', 'BraA03t09760Z' => 'bra', 'BraA03t10990Z' => 'bra', 'BraA05t20413Z' => 'bra', 'BraA08t35602Z' => 'bra', 'BraA09t36458Z' => 'bra', 'BraA09t42018Z' => 'bra', 'BraA09t42129Z' => 'bra', 'BraA10t42536Z' => 'bra', 'BraA10t42537Z' => 'bra', 'C01p10690' => 'bna', 'C02p03890' => 'bna', 'C02p03900' => 'bna', 'C03p04620' => 'bna', 'C04p19870' => 'bna', 'C04p59670' => 'bna', 'C05p02460' => 'bna', 'C05p02470' => 'bna', 'C08p00980' => 'bna', 'C08p00990' => 'bna', 'C08p51030' => 'bna', 'C08p52360' => 'bna', 'C09p09120' => 'bna', 'CAN.G19.15' => 'can', 'CAN.G251.10' => 'can', 'CAN.G251.9' => 'can', 'CAN.G398.24' => 'can', 'CAN.G410.32' => 'can', 'CAN.G881.2' => 'can', 'CANSAT01G3025' => 'cansat', 'CANSAT78G1211' => 'cansat', 'CANSAT78G1218' => 'cansat', 'CANSAT78G1521' => 'cansat', 'CANSAT78G1670' => 'cansat', 'CARHR003600' => 'chi', 'CARHR003610' => 'chi', 'CARHR006290' => 'chi', 'CARHR006430' => 'chi', 'CARHR124110' => 'chi', 'CARHR203870' => 'chi', 'CARHR203880' => 'chi', 'CARHR203890' => 'chi', 'CARHR276880' => 'chi', 'Carub.0001s0346' => 'cru', 'Carub.0001s0347' => 'cru', 'Carub.0001s0607' => 'cru', 'Carub.0003s2768' => 'cru', 'Carub.0003s2769' => 'cru', 'Carub.0004s1178' => 'cru', 'Carub.0006s0806' => 'cru', 'Carub.0006s0807' => 'cru', 'Carub.0006s0808' => 'cru', 'Carub.0008s0501' => 'cru', 'Carub.0008s2379' => 'cru', 'Ca_08655_v3' => 'car', 'Ca_08922_v3' => 'car', 'Ca_08923_v3' => 'car', 'Ca_09119_v3' => 'car', 'Ca_09703_v3' => 'car', 'Ca_09705_v3' => 'car', 'Ca_09835_v3' => 'car', 'Ca_26403_v3' => 'car', 'Ca_30719_v3' => 'car', 'CBR_g17958' => 'cbr', 'CBR_g40516' => 'cbr', 'Cc00_g05350' => 'ccan', 'Cc01_g18690' => 'ccan', 'Cc03_g04830' => 'ccan', 'Cc03_g04850' => 'ccan', 'CDE02G4469' => 'cde', 'CDE06G0883' => 'cde', 'CDE06G1295' => 'cde', 'CDE06G1390' => 'cde', 'CDE07G0584' => 'cde', 'CDE07G1084' => 'cde', 'CDE08G1259' => 'cde', 'Cfa002341' => 'cfa', 'Cfa024337' => 'cfa', 'Ciclev10004749m.g' => 'ccl', 'Ciclev10006127m.g' => 'ccl', 'Ciclev10019720m.g' => 'ccl', 'Ciclev10022652m.g' => 'ccl', 'CiPaw.01G190400' => 'cil', 'CiPaw.01G190500' => 'cil', 'CiPaw.02G116400' => 'cil', 'CiPaw.02G116500' => 'cil', 'CiPaw.04G183000' => 'cil', 'CiPaw.04G183300' => 'cil', 'ClCG05G004610' => 'cla', 'ClCG05G004620' => 'cla', 'ClCG06G006730' => 'cla', 'ClCG06G006740' => 'cla', 'ClCG11G003690' => 'cla', 'COL.COLO4_08276' => 'col', 'COL.COLO4_08277' => 'col', 'COL.COLO4_15787' => 'col', 'COL.COLO4_15789' => 'col', 'Cpa.g.c44815' => 'cpa', 'Cpa.g.sc52.144' => 'cpa', 'Cpa.g.sc58.46' => 'cpa', 'Cpa.g.sc58.47' => 'cpa', 'Cre08.g360900' => 'cre', 'CsaV3_2G013030' => 'csa', 'CsaV3_2G013050' => 'csa', 'CsaV3_2G015620' => 'csa', 'CsaV3_3G012590' => 'csa', 'CsaV3_3G012600' => 'csa', 'CSS0001641' => 'camsi', 'CSS0008310' => 'camsi', 'CSS0013011' => 'camsi', 'CSS0017147' => 'camsi', 'CSS0022970' => 'camsi', 'CSS0025655' => 'camsi', 'CSS0028665' => 'camsi', 'CSS0029117' => 'camsi', 'CSS0032024' => 'camsi', 'CSS0039681' => 'camsi', 'CSS0046516' => 'camsi', 'CSS0050307' => 'camsi', 'DCAR_005871' => 'dca', 'DCAR_007342' => 'dca', 'DCAR_024228' => 'dca', 'DCAR_027277' => 'dca', 'DCAR_030718' => 'dca', 'Dinv20287' => 'din', 'Dinv22461' => 'din', 'Dinv22464' => 'din', 'Dinv29912' => 'din', 'Dinv29913' => 'din', 'Dinv34580' => 'din', 'Dinv34582' => 'din', 'Dinv44632' => 'din', 'Duzib052G0266' => 'dzi', 'Duzib133G0907' => 'dzi', 'Duzib133G1034' => 'dzi', 'Duzib138G0207' => 'dzi', 'Duzib138G0491' => 'dzi', 'Duzib151G0812' => 'dzi', 'Duzib151G1166' => 'dzi', 'Duzib168G0192' => 'dzi', 'Duzib211G0077' => 'dzi', 'Duzib212G0429' => 'dzi', 'Duzib212G0472' => 'dzi', 'ECA233G2617' => 'eca', 'ECA236G4188' => 'eca', 'ECA240G0936' => 'eca', 'ECA240G1129' => 'eca', 'ECA247G0623' => 'eca', 'EL10Ac5g10451' => 'bvu', 'EL10Ac5g10453' => 'bvu', 'EL10Ac5g10894' => 'bvu', 'Eucgr.H00192' => 'egr', 'Eucgr.H00193' => 'egr', 'Eucgr.H00194' => 'egr', 'Eucgr.J01562' => 'egr', 'Eucgr.K03301' => 'egr', 'FAN02G0632' => 'fan', 'FAN05G5378' => 'fan', 'FAN09G3247' => 'fan', 'FAN12G0435' => 'fan', 'FAN12G2426' => 'fan', 'FAN14G1707' => 'fan', 'FAN14G4725' => 'fan', 'FAN15G2071' => 'fan', 'FAN17G3065' => 'fan', 'FAN19G1376' => 'fan', 'FAN20G0354' => 'fan', 'FAN20G2429' => 'fan', 'FAN20G2658' => 'fan', 'FAN24G2343' => 'fan', 'FAN27G2362' => 'fan', 'FAN28G1765' => 'fan', 'FvH4_1g16020' => 'fve', 'FvH4_2g04890' => 'fve', 'FvH4_2g22270' => 'fve', 'FvH4_4g02630' => 'fve', 'FvH4_4g02640' => 'fve', 'FvH4_6g02650' => 'fve', 'Glyma.02G140600' => 'gma', 'Glyma.03G159900' => 'gma', 'Glyma.05G234800' => 'gma', 'Glyma.07G269600' => 'gma', 'Glyma.08G042300' => 'gma', 'Glyma.10G033500' => 'gma', 'Glyma.10G185200' => 'gma', 'Glyma.17G004300' => 'gma', 'Glyma.19G161900' => 'gma', 'Glyma.20G205100' => 'gma', 'Glyma.20G205200' => 'gma', 'Gohir.A01G139101' => 'ghi', 'Gohir.A02G035600' => 'ghi', 'Gohir.A02G117901' => 'ghi', 'Gohir.A07G210100' => 'ghi', 'Gohir.A07G210200' => 'ghi', 'Gohir.A08G061100' => 'ghi', 'Gohir.A09G223000' => 'ghi', 'Gohir.A09G223100' => 'ghi', 'Gohir.A10G113900' => 'ghi', 'Gohir.A10G114000' => 'ghi', 'Gohir.D02G042300' => 'ghi', 'Gohir.D07G216100' => 'ghi', 'Gohir.D07G216200' => 'ghi', 'Gohir.D08G070400' => 'ghi', 'Gohir.D09G225000' => 'ghi', 'Gohir.D09G225100' => 'ghi', 'Gohir.D10G152300' => 'ghi', 'Gohir.D10G153200' => 'ghi', 'Gohir.D11G133701' => 'ghi', 'Gorai.004G074100' => 'gra', 'Gorai.005G046800' => 'gra', 'Gorai.006G246500' => 'gra', 'Gorai.006G246600' => 'gra', 'Gorai.007G142900' => 'gra', 'Gorai.011G171000' => 'gra', 'Gorai.011G171100' => 'gra', 'Gorai.013G104300' => 'gra', 'Gorai.013G104400' => 'gra', 'GSVIVG01000754001' => 'vvi', 'GSVIVG01000756001' => 'vvi', 'GSVIVG01010903001' => 'vvi', 'GSVIVG01017623001' => 'vvi', 'GSVIVG01018113001' => 'vvi', 'GSVIVG01018116001' => 'vvi', 'GSVIVG01018118001' => 'vvi', 'HanXRQChr03g0076211' => 'han', 'HanXRQChr03g0092431' => 'han', 'HanXRQChr03g0092441' => 'han', 'HanXRQChr03g0092591' => 'han', 'HanXRQChr03g0092671' => 'han', 'HanXRQChr03g0092681' => 'han', 'HanXRQChr03g0092691' => 'han', 'HanXRQChr03g0092701' => 'han', 'HanXRQChr03g0092721' => 'han', 'HanXRQChr03g0092731' => 'han', 'HanXRQChr04g0113681' => 'han', 'HanXRQChr10g0281371' => 'han', 'HanXRQChr11g0337141' => 'han', 'HanXRQChr13g0424521' => 'han', 'HanXRQChr13g0424531' => 'han', 'HanXRQChr13g0424541' => 'han', 'HanXRQChr16g0498221' => 'han', 'Haze_04377' => 'cav', 'Haze_11298' => 'cav', 'Haze_24547' => 'cav', 'Haze_24550' => 'cav', 'Haze_26587' => 'cav', 'Hma1.2p1_0650F.1_g195410' => 'hma', 'Hma1.2p1_0893F.1_g233470' => 'hma', 'HPP92_006508' => 'vpl', 'HPP92_024780' => 'vpl', 'Hund02688' => 'sun', 'Hund09380' => 'sun', 'Hund09381' => 'sun', 'Hund09832' => 'sun', 'Hund09833' => 'sun', 'Hund11351' => 'sun', 'Hund11513' => 'sun', 'Lalb_Chr06g0162591' => 'lal', 'Lalb_Chr06g0162601' => 'lal', 'Lalb_Chr06g0169321' => 'lal', 'Lalb_Chr09g0330951' => 'lal', 'Lalb_Chr16g0387631' => 'lal', 'Lalb_Chr21g0306241' => 'lal', 'Lalb_Chr25g0290051' => 'lal', 'Lalb_Chr25g0290061' => 'lal', 'Lalb_Chr25g0290071' => 'lal', 'Lj1g0003876' => 'lja', 'Lj1P1207T36' => 'lonja', 'Lj2C1156G12' => 'lonja', 'Lj3A793G39' => 'lonja', 'Lj3C580G2' => 'lonja', 'Lj3C780G2' => 'lonja', 'Lj3C780T4' => 'lonja', 'Lj3C793G9' => 'lonja', 'Lj4g0012960' => 'lja', 'Lj5g0021252' => 'lja', 'Lj5g0021484' => 'lja', 'Lj5g0024528' => 'lja', 'Lj6A399T12' => 'lonja', 'Lj6A656G65' => 'lonja', 'Lsat_1_v5_gn_3_125500' => 'lsa', 'Lsat_1_v5_gn_3_125540' => 'lsa', 'Lsat_1_v5_gn_5_72701' => 'lsa', 'Lsat_1_v5_gn_8_91560' => 'lsa', 'Lsat_1_v5_gn_9_9640' => 'lsa', 'Manes.01G200600' => 'mes', 'Manes.01G200700' => 'mes', 'Manes.03G168900' => 'mes', 'Manes.03G169000' => 'mes', 'Manes.05G085801' => 'mes', 'Manes.05G086200' => 'mes', 'Manes.15G036700' => 'mes', 'Manes.15G036900' => 'mes', 'Mapoly0004s0172' => 'mpo', 'Mapoly0023s0001' => 'mpo', 'Mapoly0142s0012' => 'mpo', 'MBI01_g32854_MAGBIO' => 'mbi', 'MBI11_g24427_MAGBIO' => 'mbi', 'MBI11_g47319_MAGBIO' => 'mbi', 'MCO01G433' => 'mco', 'MD00G1187800' => 'mdo', 'MD04G1226500' => 'mdo', 'MD05G1203900' => 'mdo', 'MD10G1191100' => 'mdo', 'MD12G1243500' => 'mdo', 'MD13G1207000' => 'mdo', 'MD13G1207100' => 'mdo', 'MD16G1208600' => 'mdo', 'Medtr1g050352' => 'mtr', 'Medtr1g070385' => 'mtr', 'Medtr1g070450' => 'mtr', 'Medtr1g075200' => 'mtr', 'Medtr1g075250' => 'mtr', 'Medtr1g075260' => 'mtr', 'Medtr1g475250' => 'mtr', 'Medtr4g075450' => 'mtr', 'Medtr7g096300' => 'mtr', 'Medtr8g105110' => 'mtr', 'MELO3C006470.2' => 'cme', 'MELO3C006471.2' => 'cme', 'MELO3C020772.2' => 'cme', 'MELO3C026780.2' => 'cme', 'MELO3C026781.2' => 'cme', 'Migut.D00390' => 'egut', 'Migut.G00435' => 'egut', 'Migut.G00436' => 'egut', 'Migut.G00718' => 'egut', 'MSTRG.21891' => 'ama', 'MSTRG.26910' => 'ama', 'MSTRG.4099' => 'ama', 'MSTRG.9925' => 'ama', 'Nitab4.5_0000165g0010' => 'nta', 'Nitab4.5_0000209g0180' => 'nta', 'Nitab4.5_0000244g0440' => 'nta', 'Nitab4.5_0000525g0220' => 'nta', 'Nitab4.5_0001597g0020' => 'nta', 'Nitab4.5_0001878g0040' => 'nta', 'Nitab4.5_0001878g0060' => 'nta', 'Nitab4.5_0002838g0100' => 'nta', 'Nitab4.5_0002838g0120' => 'nta', 'Nitab4.5_0004798g0030' => 'nta', 'Nitab4.5_0005420g0010' => 'nta', 'Nitab4.5_0005507g0010' => 'nta', 'Nitab4.5_0005574g0020' => 'nta', 'Nitab4.5_0005838g0010' => 'nta', 'Nitab4.5_0010580g0020' => 'nta', 'Nn1g02599' => 'nnu', 'Nn1g02608' => 'nnu', 'Nn3g17742' => 'nnu', 'Nn3g19534' => 'nnu', 'Nn3g19535' => 'nnu', 'Oeu008790.1' => 'oeu', 'Oeu008792.1' => 'oeu', 'Oeu032590.1' => 'oeu', 'Oeu035349.1' => 'oeu', 'Oeu049791.1' => 'oeu', 'Os01g0774500' => 'osa', 'Os03g0628800' => 'osa', 'Os03g0798600' => 'osa', 'Os05g0508800' => 'osa', 'Peaxi162Scf00036g02018' => 'pax', 'Peaxi162Scf00578g00032' => 'pax', 'Peaxi162Scf00578g00317' => 'pax', 'Peaxi162Scf00785g00114' => 'pax', 'Peaxi162Scf00813g00119' => 'pax', 'Peaxi162Scf00906g00227' => 'pax', 'PGR004G0875' => 'pgr', 'PGR004G2424' => 'pgr', 'PGR031G1239' => 'pgr', 'PGR031G2474' => 'pgr', 'PGR044G0423' => 'pgr', 'PGSC0003DMG400001128' => 'stu', 'PGSC0003DMG400007336' => 'stu', 'PGSC0003DMG400016318' => 'stu', 'PGSC0003DMG400016319' => 'stu', 'PGSC0003DMG400018074' => 'stu', 'Phvul.001G157700' => 'pvu', 'Phvul.002G148550' => 'pvu', 'Phvul.002G320200' => 'pvu', 'Phvul.003G089200' => 'pvu', 'Phvul.007G126000' => 'pvu', 'Phvul.007G126100' => 'pvu', 'Phvul.007G178000' => 'pvu', 'Phvul.007G178200' => 'pvu', 'Potri.002G043000' => 'ptr', 'Potri.002G043200' => 'ptr', 'Potri.003G123750' => 'ptr', 'Potri.005G055401' => 'ptr', 'Potri.005G219700' => 'ptr', 'Potri.005G220000' => 'ptr', 'Potri.008G161901' => 'ptr', 'Potri.008G162000' => 'ptr', 'Potri.008G162400' => 'ptr', 'Potri.010G076900' => 'ptr', 'Pp3c12_9180' => 'ppa', 'Pp3c13_19770' => 'ppa', 'Pp3c14_22950' => 'ppa', 'Pp3c16_12160' => 'ppa', 'Pp3c27_7820' => 'ppa', 'Pp3c2_3490' => 'ppa', 'Pp3c3_23700' => 'ppa', 'Pp3c3_36520' => 'ppa', 'Pp3c4_15250' => 'ppa', 'PRCOL_00007002' => 'pco', 'Prupe.1G030600' => 'ppe', 'Prupe.1G030700' => 'ppe', 'Prupe.6G345200' => 'ppe', 'Prupe.8G230300' => 'ppe', 'Prupe.8G230500' => 'ppe', 'Psat3g059600' => 'psa', 'Psat5g200920' => 'psa', 'Psat6g056440' => 'psa', 'Psat6g057360' => 'psa', 'Psat6g134120' => 'psa', 'Psat6g134160' => 'psa', 'Psat7g008640' => 'psa', 'Psat7g185240' => 'psa', 'PSO017G1330' => 'pso', 'PSO063G6097' => 'pso', 'PSO170G0835' => 'pso', 'PSO170G2499' => 'pso', 'PSO210G5058' => 'pso', 'PSO210G6154' => 'pso', 'PSO585G0031' => 'pso', 'PSO832G0264' => 'pso', 'PSO832G4288' => 'pso', 'QL03p027355' => 'qlo', 'QL03p027430' => 'qlo', 'QL04p081380' => 'qlo', 'QL06p015642' => 'qlo', 'QL06p015650' => 'qlo', 'QL06p015686' => 'qlo', 'QL12p042927' => 'qlo', 'QL93p1863_0035' => 'qlo', 'RcHm_v2.0_Chr3g0450581' => 'rch', 'RcHm_v2.0_Chr4g0390371' => 'rch', 'RcHm_v2.0_Chr4g0390381' => 'rch', 'RcHm_v2.0_Chr4g0390491' => 'rch', 'RcHm_v2.0_Chr4g0390501' => 'rch', 'RcHm_v2.0_Chr6g0289231' => 'rch', 'Rhsim04G0190400' => 'rsi', 'Rhsim04G0190500' => 'rsi', 'Rhsim04G0190600' => 'rsi', 'Rhsim13G0031400' => 'rsi', 'Rhsim13G0165600' => 'rsi', 'RhsimUnG0114600' => 'rsi', 'RhsimUnG0114700' => 'rsi', 'Sabra02G0034800' => 'sbr', 'Sabra02G0035100' => 'sbr', 'Sabra05G0168600' => 'sbr', 'Sabra05G0168800' => 'sbr', 'Sabra08G0123700' => 'sbr', 'Sabra10G0031900' => 'sbr', 'Sabra13G0039000' => 'sbr', 'SalBow2G0782' => 'sbo', 'SalBow2G1403' => 'sbo', 'SalBow4G0074' => 'sbo', 'SalBow4G2635' => 'sbo', 'SalBow5G3010' => 'sbo', 'Sc05g0000870' => 'sci', 'Sc05g0000890' => 'sci', 'Sc13g0005000' => 'sci', 'Sc13g0005030' => 'sci', 'Sc19g0003790' => 'sci', 'Sc19g0003800' => 'sci', 'Sed0003467' => 'sed', 'Sed0009355' => 'sed', 'Sed0009894' => 'sed', 'Sed0011972' => 'sed', 'Sed0021483' => 'sed', 'Sed0021750' => 'sed', 'Sed0026279' => 'sed', 'SEGI_05312' => 'sgi', 'SEGI_10112' => 'sgi', 'SEGI_15835' => 'sgi', 'SEGI_30386' => 'sgi', 'SEGI_34122' => 'sgi', 'SEGI_35063' => 'sgi', 'SGA_v2.0_scaffold101G29794' => 'sas', 'SGA_v2.0_scaffold1G00573' => 'sas', 'SGA_v2.0_scaffold79G25637' => 'sas', 'SGA_v2.0_scaffold88G27283' => 'sas', 'SGA_v2.0_scaffold88G27285' => 'sas', 'SGA_v2.0_scaffold88G27331' => 'sas', 'SHI09937' => 'shi', 'SMO119G0302' => 'smo', 'SMO137G0231' => 'smo', 'SMO367G1151' => 'smo', 'Solyc02g082000.3' => 'sly', 'Solyc06g031670.3' => 'sly', 'Solyc06g053810.3' => 'sly', 'Solyc07g025457.1' => 'sly', 'Solyc08g059740.1' => 'sly', 'Solyc08g059750.3' => 'sly', 'Solyc09g083370.3' => 'sly', 'Solyc12g038950.3' => 'sly', 'Sopen02g026630' => 'spe', 'Sopen06g018930' => 'spe', 'Sopen06g018940' => 'spe', 'Sopen08g009460' => 'spe', 'Sopen09g032290' => 'spe', 'Sp1g03080' => 'spa', 'Sp1g03090' => 'spa', 'Sp1g05480' => 'spa', 'Sp2g07860' => 'spa', 'Sp2g08430' => 'spa', 'Sp2g08440' => 'spa', 'Sp2g26200' => 'spa', 'Sp4g13170' => 'spa', 'Sp6g33840' => 'spa', 'SpUn1204_0010' => 'spa', 'TAR365G0908' => 'tar', 'TAR381G1270' => 'tar', 'TAR381G1651' => 'tar', 'TAR625G1131' => 'tar', 'TAR633G0962' => 'tar', 'TAR633G1729' => 'tar', 'TAR633G1864' => 'tar', 'TAR636G0221' => 'tar', 'TAR636G0314' => 'tar', 'TAR636G3202' => 'tar', 'THA.LOC104800805' => 'tha', 'THA.LOC104801096' => 'tha', 'THA.LOC104801555' => 'tha', 'THA.LOC104808491' => 'tha', 'THA.LOC104808595' => 'tha', 'THA.LOC104815985' => 'tha', 'THA.LOC104822250' => 'tha', 'THA.LOC104826071' => 'tha', 'Thecc.01G265200' => 'tca', 'Thecc.01G265300' => 'tca', 'Thecc.01G265700' => 'tca', 'Thecc.03G109100' => 'tca', 'Thecc.04G245900' => 'tca', 'Thecc.04G246000' => 'tca', 'Thhalv10003334m.g' => 'esa', 'Thhalv10005508m.g' => 'esa', 'Thhalv10005643m.g' => 'esa', 'Thhalv10007316m.g' => 'esa', 'Thhalv10009006m.g' => 'esa', 'Thhalv10009309m.g' => 'esa', 'Thhalv10014917m.g' => 'esa', 'Thhalv10014919m.g' => 'esa', 'Thhalv10015393m.g' => 'esa', 'Thhalv10016515m.g' => 'esa', 'Thhalv10029242m.g' => 'esa', 'TPR.G16654' => 'tpr', 'TPR.G20589' => 'tpr', 'TPR.G23029' => 'tpr', 'TPR.G27731' => 'tpr', 'TPR.G28889' => 'tpr', 'TPR.G28899' => 'tpr', 'TPR.G30846' => 'tpr', 'TPR.G5452' => 'tpr', 'TPR.G5713' => 'tpr', 'TPR.G9046' => 'tpr', 'TPR.G9061' => 'tpr', 'TWI09G1075' => 'twi', 'TWI12G0806' => 'twi', 'TWI18G0108' => 'twi', 'TWI53G1361' => 'twi', 'TWI73G0185' => 'twi', 'TWI73G0427' => 'twi', 'unitig_37.g12001' => 'ugi', 'unitig_747.g21660' => 'ugi', 'unitig_748.g7232' => 'ugi', 'unitig_748.g7315' => 'ugi', 'unitig_85.g27262' => 'ugi', 'unitig_92.g28220' => 'ugi', 'vmacro02632' => 'vma', 'vmacro08410' => 'vma', 'vmacro08411' => 'vma', 'vmacro15407' => 'vma', 'VMungo0251G3619' => 'vmu', 'VMungo0720G1204' => 'vmu', 'VMungo0720G1918' => 'vmu', 'VMungo0720G2387' => 'vmu', 'VMungo0720G2961' => 'vmu', 'VMungo1215G2154' => 'vmu', 'VMungo1383G2411' => 'vmu', 'Zm00001eb051130' => 'zma', 'Zm00001eb116830' => 'zma', 'Zm00001eb116850' => 'zma', 'Zm00001eb151740' => 'zma', 'Zm00001eb292360' => 'zma', 'Zm00001eb301640' => 'zma' ) $gf_id = 'HOM05D000856' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000856' ) $data_identifier = 'HOM05D000856' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 13, 'ath' => (int) 10, 'atr' => (int) 1, 'acertr' => (int) 8, 'cqu' => (int) 6, 'bca' => (int) 21, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 11, 'car' => (int) 9, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 8, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 5, 'fan' => (int) 16, 'fve' => (int) 6, 'gma' => (int) 11, 'ghi' => (int) 19, 'gra' => (int) 9, 'vvi' => (int) 7, 'han' => (int) 17, 'cav' => (int) 5, 'hma' => (int) 2, 'vpl' => (int) 2, 'sun' => (int) 7, 'lal' => (int) 9, 'lja' => (int) 5, 'lonja' => (int) 9, 'lsa' => (int) 5, 'mes' => (int) 8, 'mpo' => (int) 3, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 10, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 15, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 9, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 9, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 6, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 5, 'spa' => (int) 10, 'tar' => (int) 10, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 11, 'tpr' => (int) 11, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 4, 'vmu' => (int) 7, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb301640' $species_info = array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ) $local_species = 'vpl' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000856', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p00010' => 'bna', 'A03p04160' => 'bna', 'A03p17160' => 'bna', 'A04p23370' => 'bna', 'A05p14860' => 'bna', 'A08p37020' => 'bna', 'A09p08050' => 'bna', 'A09p66800' => 'bna', 'A09p67940' => 'bna', 'A10p02680' => 'bna', 'A10p05320' => 'bna', 'Aa31LG1G20560' => 'aar', 'Aa31LG1G20610' => 'aar', 'Aa31LG1G7810' => 'aar', 'Aa31LG5G3590' => 'aar', 'Aa31LG5G6140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3819' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4683' => 'aag', 'Actinidia04480' => 'ach', 'Actinidia05466' => 'ach', 'Actinidia08445' => 'ach', 'Actinidia21170' => 'ach', 'Actinidia24812' => 'ach', 'Actinidia24951' => 'ach', 'Actinidia40088' => 'ach', 'Ah.02g111660' => 'amhyb', 'Ah.11g048900' => 'amhyb', 'Ah.11g049910' => 'amhyb', 'AL1G13870' => 'aly', 'AL1G13880' => 'aly', 'AL1G16760' => 'aly', 'AL390U10020' => 'aly', 'AL4G25520' => 'aly', 'AL6G19890' => 'aly', 'AL6G19900' => 'aly', 'AL6G19910' => 'aly', 'AL8G40100' => 'aly', 'Aqoxy2G03562' => 'aox', 'Aqoxy5G00316' => 'aox', 'Aqoxy5G00926' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1628KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1H403S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2FU6SJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.882I6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8YRY2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YN1SN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AF70II' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZA8L1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F916KL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHRD8H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KTZ8QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S22EMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8M29T' => 'arhy', 'AT1G04270' => 'ath', 'AT1G04280' => 'ath', 'AT1G06750' => 'ath', 'AT1G33850' => 'ath', 'AT2G30630' => 'ath', 'AT5G09490' => 'ath', 'AT5G09500' => 'ath', 'AT5G09510' => 'ath', 'AT5G43640' => 'ath', 'AT5G63070' => 'ath', 'ATR0605G315' => 'atr', 'Atru.chr11.175' => 'acertr', 'Atru.chr11.653' => 'acertr', 'Atru.chr3.1616' => 'acertr', 'Atru.chr4.2230' => 'acertr', 'Atru.chr4.2232' => 'acertr', 'Atru.chr5.1598' => 'acertr', 'Atru.chr5.1600' => 'acertr', 'Atru.chr5.2188' => 'acertr', 'AUR62008326' => 'cqu', 'AUR62011922' => 'cqu', 'AUR62011924' => 'cqu', 'AUR62021771' => 'cqu', 'AUR62032237' => 'cqu', 'AUR62032240' => 'cqu', 'BcaB01g05572' => 'bca', 'BcaB02g10337' => 'bca', 'BcaB04g19944' => 'bca', 'BcaB05g21548' => 'bca', 'BcaB05g21549' => 'bca', 'BcaB05g23227' => 'bca', 'BcaB06g26256' => 'bca', 'BcaB06g26257' => 'bca', 'BcaB06g28379' => 'bca', 'BcaC02g11159' => 'bca', 'BcaC03g13258' => 'bca', 'BcaC03g13259' => 'bca', 'BcaC05g24456' => 'bca', 'BcaC05g24457' => 'bca', 'BcaC07g36922' => 'bca', 'BcaC07g36923' => 'bca', 'BcaC07g42050' => 'bca', 'BcaC07g42176' => 'bca', 'BcaC07g42195' => 'bca', 'BcaC07g42196' => 'bca', 'BcaNung06674' => 'bca', 'BolC2t06351H' => 'bol', 'BolC2t06352H' => 'bol', 'BolC3t12993H' => 'bol', 'BolC4t23525H' => 'bol', 'BolC4t27475H' => 'bol', 'BolC5t29025H' => 'bol', 'BolC5t29026H' => 'bol', 'BolC8t46898H' => 'bol', 'BolC8t46899H' => 'bol', 'BolC8t52630H' => 'bol', 'BolC8t52765H' => 'bol', 'BolC9t53824H' => 'bol', 'BraA03t09760Z' => 'bra', 'BraA03t10990Z' => 'bra', 'BraA05t20413Z' => 'bra', 'BraA08t35602Z' => 'bra', 'BraA09t36458Z' => 'bra', 'BraA09t42018Z' => 'bra', 'BraA09t42129Z' => 'bra', 'BraA10t42536Z' => 'bra', 'BraA10t42537Z' => 'bra', 'C01p10690' => 'bna', 'C02p03890' => 'bna', 'C02p03900' => 'bna', 'C03p04620' => 'bna', 'C04p19870' => 'bna', 'C04p59670' => 'bna', 'C05p02460' => 'bna', 'C05p02470' => 'bna', 'C08p00980' => 'bna', 'C08p00990' => 'bna', 'C08p51030' => 'bna', 'C08p52360' => 'bna', 'C09p09120' => 'bna', 'CAN.G19.15' => 'can', 'CAN.G251.10' => 'can', 'CAN.G251.9' => 'can', 'CAN.G398.24' => 'can', 'CAN.G410.32' => 'can', 'CAN.G881.2' => 'can', 'CANSAT01G3025' => 'cansat', 'CANSAT78G1211' => 'cansat', 'CANSAT78G1218' => 'cansat', 'CANSAT78G1521' => 'cansat', 'CANSAT78G1670' => 'cansat', 'CARHR003600' => 'chi', 'CARHR003610' => 'chi', 'CARHR006290' => 'chi', 'CARHR006430' => 'chi', 'CARHR124110' => 'chi', 'CARHR203870' => 'chi', 'CARHR203880' => 'chi', 'CARHR203890' => 'chi', 'CARHR276880' => 'chi', 'Carub.0001s0346' => 'cru', 'Carub.0001s0347' => 'cru', 'Carub.0001s0607' => 'cru', 'Carub.0003s2768' => 'cru', 'Carub.0003s2769' => 'cru', 'Carub.0004s1178' => 'cru', 'Carub.0006s0806' => 'cru', 'Carub.0006s0807' => 'cru', 'Carub.0006s0808' => 'cru', 'Carub.0008s0501' => 'cru', 'Carub.0008s2379' => 'cru', 'Ca_08655_v3' => 'car', 'Ca_08922_v3' => 'car', 'Ca_08923_v3' => 'car', 'Ca_09119_v3' => 'car', 'Ca_09703_v3' => 'car', 'Ca_09705_v3' => 'car', 'Ca_09835_v3' => 'car', 'Ca_26403_v3' => 'car', 'Ca_30719_v3' => 'car', 'CBR_g17958' => 'cbr', 'CBR_g40516' => 'cbr', 'Cc00_g05350' => 'ccan', 'Cc01_g18690' => 'ccan', 'Cc03_g04830' => 'ccan', 'Cc03_g04850' => 'ccan', 'CDE02G4469' => 'cde', 'CDE06G0883' => 'cde', 'CDE06G1295' => 'cde', 'CDE06G1390' => 'cde', 'CDE07G0584' => 'cde', 'CDE07G1084' => 'cde', 'CDE08G1259' => 'cde', 'Cfa002341' => 'cfa', 'Cfa024337' => 'cfa', 'Ciclev10004749m.g' => 'ccl', 'Ciclev10006127m.g' => 'ccl', 'Ciclev10019720m.g' => 'ccl', 'Ciclev10022652m.g' => 'ccl', 'CiPaw.01G190400' => 'cil', 'CiPaw.01G190500' => 'cil', 'CiPaw.02G116400' => 'cil', 'CiPaw.02G116500' => 'cil', 'CiPaw.04G183000' => 'cil', 'CiPaw.04G183300' => 'cil', 'ClCG05G004610' => 'cla', 'ClCG05G004620' => 'cla', 'ClCG06G006730' => 'cla', 'ClCG06G006740' => 'cla', 'ClCG11G003690' => 'cla', 'COL.COLO4_08276' => 'col', 'COL.COLO4_08277' => 'col', 'COL.COLO4_15787' => 'col', 'COL.COLO4_15789' => 'col', 'Cpa.g.c44815' => 'cpa', 'Cpa.g.sc52.144' => 'cpa', 'Cpa.g.sc58.46' => 'cpa', 'Cpa.g.sc58.47' => 'cpa', 'Cre08.g360900' => 'cre', 'CsaV3_2G013030' => 'csa', 'CsaV3_2G013050' => 'csa', 'CsaV3_2G015620' => 'csa', 'CsaV3_3G012590' => 'csa', 'CsaV3_3G012600' => 'csa', 'CSS0001641' => 'camsi', 'CSS0008310' => 'camsi', 'CSS0013011' => 'camsi', 'CSS0017147' => 'camsi', 'CSS0022970' => 'camsi', 'CSS0025655' => 'camsi', 'CSS0028665' => 'camsi', 'CSS0029117' => 'camsi', 'CSS0032024' => 'camsi', 'CSS0039681' => 'camsi', 'CSS0046516' => 'camsi', 'CSS0050307' => 'camsi', 'DCAR_005871' => 'dca', 'DCAR_007342' => 'dca', 'DCAR_024228' => 'dca', 'DCAR_027277' => 'dca', 'DCAR_030718' => 'dca', 'Dinv20287' => 'din', 'Dinv22461' => 'din', 'Dinv22464' => 'din', 'Dinv29912' => 'din', 'Dinv29913' => 'din', 'Dinv34580' => 'din', 'Dinv34582' => 'din', 'Dinv44632' => 'din', 'Duzib052G0266' => 'dzi', 'Duzib133G0907' => 'dzi', 'Duzib133G1034' => 'dzi', 'Duzib138G0207' => 'dzi', 'Duzib138G0491' => 'dzi', 'Duzib151G0812' => 'dzi', 'Duzib151G1166' => 'dzi', 'Duzib168G0192' => 'dzi', 'Duzib211G0077' => 'dzi', 'Duzib212G0429' => 'dzi', 'Duzib212G0472' => 'dzi', 'ECA233G2617' => 'eca', 'ECA236G4188' => 'eca', 'ECA240G0936' => 'eca', 'ECA240G1129' => 'eca', 'ECA247G0623' => 'eca', 'EL10Ac5g10451' => 'bvu', 'EL10Ac5g10453' => 'bvu', 'EL10Ac5g10894' => 'bvu', 'Eucgr.H00192' => 'egr', 'Eucgr.H00193' => 'egr', 'Eucgr.H00194' => 'egr', 'Eucgr.J01562' => 'egr', 'Eucgr.K03301' => 'egr', 'FAN02G0632' => 'fan', 'FAN05G5378' => 'fan', 'FAN09G3247' => 'fan', 'FAN12G0435' => 'fan', 'FAN12G2426' => 'fan', 'FAN14G1707' => 'fan', 'FAN14G4725' => 'fan', 'FAN15G2071' => 'fan', 'FAN17G3065' => 'fan', 'FAN19G1376' => 'fan', 'FAN20G0354' => 'fan', 'FAN20G2429' => 'fan', 'FAN20G2658' => 'fan', 'FAN24G2343' => 'fan', 'FAN27G2362' => 'fan', 'FAN28G1765' => 'fan', 'FvH4_1g16020' => 'fve', 'FvH4_2g04890' => 'fve', 'FvH4_2g22270' => 'fve', 'FvH4_4g02630' => 'fve', 'FvH4_4g02640' => 'fve', 'FvH4_6g02650' => 'fve', 'Glyma.02G140600' => 'gma', 'Glyma.03G159900' => 'gma', 'Glyma.05G234800' => 'gma', 'Glyma.07G269600' => 'gma', 'Glyma.08G042300' => 'gma', 'Glyma.10G033500' => 'gma', 'Glyma.10G185200' => 'gma', 'Glyma.17G004300' => 'gma', 'Glyma.19G161900' => 'gma', 'Glyma.20G205100' => 'gma', 'Glyma.20G205200' => 'gma', 'Gohir.A01G139101' => 'ghi', 'Gohir.A02G035600' => 'ghi', 'Gohir.A02G117901' => 'ghi', 'Gohir.A07G210100' => 'ghi', 'Gohir.A07G210200' => 'ghi', 'Gohir.A08G061100' => 'ghi', 'Gohir.A09G223000' => 'ghi', 'Gohir.A09G223100' => 'ghi', 'Gohir.A10G113900' => 'ghi', 'Gohir.A10G114000' => 'ghi', 'Gohir.D02G042300' => 'ghi', 'Gohir.D07G216100' => 'ghi', 'Gohir.D07G216200' => 'ghi', 'Gohir.D08G070400' => 'ghi', 'Gohir.D09G225000' => 'ghi', 'Gohir.D09G225100' => 'ghi', 'Gohir.D10G152300' => 'ghi', 'Gohir.D10G153200' => 'ghi', 'Gohir.D11G133701' => 'ghi', 'Gorai.004G074100' => 'gra', 'Gorai.005G046800' => 'gra', 'Gorai.006G246500' => 'gra', 'Gorai.006G246600' => 'gra', 'Gorai.007G142900' => 'gra', 'Gorai.011G171000' => 'gra', 'Gorai.011G171100' => 'gra', 'Gorai.013G104300' => 'gra', 'Gorai.013G104400' => 'gra', 'GSVIVG01000754001' => 'vvi', 'GSVIVG01000756001' => 'vvi', 'GSVIVG01010903001' => 'vvi', 'GSVIVG01017623001' => 'vvi', 'GSVIVG01018113001' => 'vvi', 'GSVIVG01018116001' => 'vvi', 'GSVIVG01018118001' => 'vvi', 'HanXRQChr03g0076211' => 'han', 'HanXRQChr03g0092431' => 'han', 'HanXRQChr03g0092441' => 'han', 'HanXRQChr03g0092591' => 'han', 'HanXRQChr03g0092671' => 'han', 'HanXRQChr03g0092681' => 'han', 'HanXRQChr03g0092691' => 'han', 'HanXRQChr03g0092701' => 'han', 'HanXRQChr03g0092721' => 'han', 'HanXRQChr03g0092731' => 'han', 'HanXRQChr04g0113681' => 'han', 'HanXRQChr10g0281371' => 'han', 'HanXRQChr11g0337141' => 'han', 'HanXRQChr13g0424521' => 'han', 'HanXRQChr13g0424531' => 'han', 'HanXRQChr13g0424541' => 'han', 'HanXRQChr16g0498221' => 'han', 'Haze_04377' => 'cav', 'Haze_11298' => 'cav', 'Haze_24547' => 'cav', 'Haze_24550' => 'cav', 'Haze_26587' => 'cav', 'Hma1.2p1_0650F.1_g195410' => 'hma', 'Hma1.2p1_0893F.1_g233470' => 'hma', 'HPP92_006508' => 'vpl', 'HPP92_024780' => 'vpl', 'Hund02688' => 'sun', 'Hund09380' => 'sun', 'Hund09381' => 'sun', 'Hund09832' => 'sun', 'Hund09833' => 'sun', 'Hund11351' => 'sun', 'Hund11513' => 'sun', 'Lalb_Chr06g0162591' => 'lal', 'Lalb_Chr06g0162601' => 'lal', 'Lalb_Chr06g0169321' => 'lal', 'Lalb_Chr09g0330951' => 'lal', 'Lalb_Chr16g0387631' => 'lal', 'Lalb_Chr21g0306241' => 'lal', 'Lalb_Chr25g0290051' => 'lal', 'Lalb_Chr25g0290061' => 'lal', 'Lalb_Chr25g0290071' => 'lal', 'Lj1g0003876' => 'lja', 'Lj1P1207T36' => 'lonja', 'Lj2C1156G12' => 'lonja', 'Lj3A793G39' => 'lonja', 'Lj3C580G2' => 'lonja', 'Lj3C780G2' => 'lonja', 'Lj3C780T4' => 'lonja', 'Lj3C793G9' => 'lonja', 'Lj4g0012960' => 'lja', 'Lj5g0021252' => 'lja', 'Lj5g0021484' => 'lja', 'Lj5g0024528' => 'lja', 'Lj6A399T12' => 'lonja', 'Lj6A656G65' => 'lonja', 'Lsat_1_v5_gn_3_125500' => 'lsa', 'Lsat_1_v5_gn_3_125540' => 'lsa', 'Lsat_1_v5_gn_5_72701' => 'lsa', 'Lsat_1_v5_gn_8_91560' => 'lsa', 'Lsat_1_v5_gn_9_9640' => 'lsa', 'Manes.01G200600' => 'mes', 'Manes.01G200700' => 'mes', 'Manes.03G168900' => 'mes', 'Manes.03G169000' => 'mes', 'Manes.05G085801' => 'mes', 'Manes.05G086200' => 'mes', 'Manes.15G036700' => 'mes', 'Manes.15G036900' => 'mes', 'Mapoly0004s0172' => 'mpo', 'Mapoly0023s0001' => 'mpo', 'Mapoly0142s0012' => 'mpo', 'MBI01_g32854_MAGBIO' => 'mbi', 'MBI11_g24427_MAGBIO' => 'mbi', 'MBI11_g47319_MAGBIO' => 'mbi', 'MCO01G433' => 'mco', 'MD00G1187800' => 'mdo', 'MD04G1226500' => 'mdo', 'MD05G1203900' => 'mdo', 'MD10G1191100' => 'mdo', 'MD12G1243500' => 'mdo', 'MD13G1207000' => 'mdo', 'MD13G1207100' => 'mdo', 'MD16G1208600' => 'mdo', 'Medtr1g050352' => 'mtr', 'Medtr1g070385' => 'mtr', 'Medtr1g070450' => 'mtr', 'Medtr1g075200' => 'mtr', 'Medtr1g075250' => 'mtr', 'Medtr1g075260' => 'mtr', 'Medtr1g475250' => 'mtr', 'Medtr4g075450' => 'mtr', 'Medtr7g096300' => 'mtr', 'Medtr8g105110' => 'mtr', 'MELO3C006470.2' => 'cme', 'MELO3C006471.2' => 'cme', 'MELO3C020772.2' => 'cme', 'MELO3C026780.2' => 'cme', 'MELO3C026781.2' => 'cme', 'Migut.D00390' => 'egut', 'Migut.G00435' => 'egut', 'Migut.G00436' => 'egut', 'Migut.G00718' => 'egut', 'MSTRG.21891' => 'ama', 'MSTRG.26910' => 'ama', 'MSTRG.4099' => 'ama', 'MSTRG.9925' => 'ama', 'Nitab4.5_0000165g0010' => 'nta', 'Nitab4.5_0000209g0180' => 'nta', 'Nitab4.5_0000244g0440' => 'nta', 'Nitab4.5_0000525g0220' => 'nta', 'Nitab4.5_0001597g0020' => 'nta', 'Nitab4.5_0001878g0040' => 'nta', 'Nitab4.5_0001878g0060' => 'nta', 'Nitab4.5_0002838g0100' => 'nta', 'Nitab4.5_0002838g0120' => 'nta', 'Nitab4.5_0004798g0030' => 'nta', 'Nitab4.5_0005420g0010' => 'nta', 'Nitab4.5_0005507g0010' => 'nta', 'Nitab4.5_0005574g0020' => 'nta', 'Nitab4.5_0005838g0010' => 'nta', 'Nitab4.5_0010580g0020' => 'nta', 'Nn1g02599' => 'nnu', 'Nn1g02608' => 'nnu', 'Nn3g17742' => 'nnu', 'Nn3g19534' => 'nnu', 'Nn3g19535' => 'nnu', 'Oeu008790.1' => 'oeu', 'Oeu008792.1' => 'oeu', 'Oeu032590.1' => 'oeu', 'Oeu035349.1' => 'oeu', 'Oeu049791.1' => 'oeu', 'Os01g0774500' => 'osa', 'Os03g0628800' => 'osa', 'Os03g0798600' => 'osa', 'Os05g0508800' => 'osa', 'Peaxi162Scf00036g02018' => 'pax', 'Peaxi162Scf00578g00032' => 'pax', 'Peaxi162Scf00578g00317' => 'pax', 'Peaxi162Scf00785g00114' => 'pax', 'Peaxi162Scf00813g00119' => 'pax', 'Peaxi162Scf00906g00227' => 'pax', 'PGR004G0875' => 'pgr', 'PGR004G2424' => 'pgr', 'PGR031G1239' => 'pgr', 'PGR031G2474' => 'pgr', 'PGR044G0423' => 'pgr', 'PGSC0003DMG400001128' => 'stu', 'PGSC0003DMG400007336' => 'stu', 'PGSC0003DMG400016318' => 'stu', 'PGSC0003DMG400016319' => 'stu', 'PGSC0003DMG400018074' => 'stu', 'Phvul.001G157700' => 'pvu', 'Phvul.002G148550' => 'pvu', 'Phvul.002G320200' => 'pvu', 'Phvul.003G089200' => 'pvu', 'Phvul.007G126000' => 'pvu', 'Phvul.007G126100' => 'pvu', 'Phvul.007G178000' => 'pvu', 'Phvul.007G178200' => 'pvu', 'Potri.002G043000' => 'ptr', 'Potri.002G043200' => 'ptr', 'Potri.003G123750' => 'ptr', 'Potri.005G055401' => 'ptr', 'Potri.005G219700' => 'ptr', 'Potri.005G220000' => 'ptr', 'Potri.008G161901' => 'ptr', 'Potri.008G162000' => 'ptr', 'Potri.008G162400' => 'ptr', 'Potri.010G076900' => 'ptr', 'Pp3c12_9180' => 'ppa', 'Pp3c13_19770' => 'ppa', 'Pp3c14_22950' => 'ppa', 'Pp3c16_12160' => 'ppa', 'Pp3c27_7820' => 'ppa', 'Pp3c2_3490' => 'ppa', 'Pp3c3_23700' => 'ppa', 'Pp3c3_36520' => 'ppa', 'Pp3c4_15250' => 'ppa', 'PRCOL_00007002' => 'pco', 'Prupe.1G030600' => 'ppe', 'Prupe.1G030700' => 'ppe', 'Prupe.6G345200' => 'ppe', 'Prupe.8G230300' => 'ppe', 'Prupe.8G230500' => 'ppe', 'Psat3g059600' => 'psa', 'Psat5g200920' => 'psa', 'Psat6g056440' => 'psa', 'Psat6g057360' => 'psa', 'Psat6g134120' => 'psa', 'Psat6g134160' => 'psa', 'Psat7g008640' => 'psa', 'Psat7g185240' => 'psa', 'PSO017G1330' => 'pso', 'PSO063G6097' => 'pso', 'PSO170G0835' => 'pso', 'PSO170G2499' => 'pso', 'PSO210G5058' => 'pso', 'PSO210G6154' => 'pso', 'PSO585G0031' => 'pso', 'PSO832G0264' => 'pso', 'PSO832G4288' => 'pso', 'QL03p027355' => 'qlo', 'QL03p027430' => 'qlo', 'QL04p081380' => 'qlo', 'QL06p015642' => 'qlo', 'QL06p015650' => 'qlo', 'QL06p015686' => 'qlo', 'QL12p042927' => 'qlo', 'QL93p1863_0035' => 'qlo', 'RcHm_v2.0_Chr3g0450581' => 'rch', 'RcHm_v2.0_Chr4g0390371' => 'rch', 'RcHm_v2.0_Chr4g0390381' => 'rch', 'RcHm_v2.0_Chr4g0390491' => 'rch', 'RcHm_v2.0_Chr4g0390501' => 'rch', 'RcHm_v2.0_Chr6g0289231' => 'rch', 'Rhsim04G0190400' => 'rsi', 'Rhsim04G0190500' => 'rsi', 'Rhsim04G0190600' => 'rsi', 'Rhsim13G0031400' => 'rsi', 'Rhsim13G0165600' => 'rsi', 'RhsimUnG0114600' => 'rsi', 'RhsimUnG0114700' => 'rsi', 'Sabra02G0034800' => 'sbr', 'Sabra02G0035100' => 'sbr', 'Sabra05G0168600' => 'sbr', 'Sabra05G0168800' => 'sbr', 'Sabra08G0123700' => 'sbr', 'Sabra10G0031900' => 'sbr', 'Sabra13G0039000' => 'sbr', 'SalBow2G0782' => 'sbo', 'SalBow2G1403' => 'sbo', 'SalBow4G0074' => 'sbo', 'SalBow4G2635' => 'sbo', 'SalBow5G3010' => 'sbo', 'Sc05g0000870' => 'sci', 'Sc05g0000890' => 'sci', 'Sc13g0005000' => 'sci', 'Sc13g0005030' => 'sci', 'Sc19g0003790' => 'sci', 'Sc19g0003800' => 'sci', 'Sed0003467' => 'sed', 'Sed0009355' => 'sed', 'Sed0009894' => 'sed', 'Sed0011972' => 'sed', 'Sed0021483' => 'sed', 'Sed0021750' => 'sed', 'Sed0026279' => 'sed', 'SEGI_05312' => 'sgi', 'SEGI_10112' => 'sgi', 'SEGI_15835' => 'sgi', 'SEGI_30386' => 'sgi', 'SEGI_34122' => 'sgi', 'SEGI_35063' => 'sgi', 'SGA_v2.0_scaffold101G29794' => 'sas', 'SGA_v2.0_scaffold1G00573' => 'sas', 'SGA_v2.0_scaffold79G25637' => 'sas', 'SGA_v2.0_scaffold88G27283' => 'sas', 'SGA_v2.0_scaffold88G27285' => 'sas', 'SGA_v2.0_scaffold88G27331' => 'sas', 'SHI09937' => 'shi', 'SMO119G0302' => 'smo', 'SMO137G0231' => 'smo', 'SMO367G1151' => 'smo', 'Solyc02g082000.3' => 'sly', 'Solyc06g031670.3' => 'sly', 'Solyc06g053810.3' => 'sly', 'Solyc07g025457.1' => 'sly', 'Solyc08g059740.1' => 'sly', 'Solyc08g059750.3' => 'sly', 'Solyc09g083370.3' => 'sly', 'Solyc12g038950.3' => 'sly', 'Sopen02g026630' => 'spe', 'Sopen06g018930' => 'spe', 'Sopen06g018940' => 'spe', 'Sopen08g009460' => 'spe', 'Sopen09g032290' => 'spe', 'Sp1g03080' => 'spa', 'Sp1g03090' => 'spa', 'Sp1g05480' => 'spa', 'Sp2g07860' => 'spa', 'Sp2g08430' => 'spa', 'Sp2g08440' => 'spa', 'Sp2g26200' => 'spa', 'Sp4g13170' => 'spa', 'Sp6g33840' => 'spa', 'SpUn1204_0010' => 'spa', 'TAR365G0908' => 'tar', 'TAR381G1270' => 'tar', 'TAR381G1651' => 'tar', 'TAR625G1131' => 'tar', 'TAR633G0962' => 'tar', 'TAR633G1729' => 'tar', 'TAR633G1864' => 'tar', 'TAR636G0221' => 'tar', 'TAR636G0314' => 'tar', 'TAR636G3202' => 'tar', 'THA.LOC104800805' => 'tha', 'THA.LOC104801096' => 'tha', 'THA.LOC104801555' => 'tha', 'THA.LOC104808491' => 'tha', 'THA.LOC104808595' => 'tha', 'THA.LOC104815985' => 'tha', 'THA.LOC104822250' => 'tha', 'THA.LOC104826071' => 'tha', 'Thecc.01G265200' => 'tca', 'Thecc.01G265300' => 'tca', 'Thecc.01G265700' => 'tca', 'Thecc.03G109100' => 'tca', 'Thecc.04G245900' => 'tca', 'Thecc.04G246000' => 'tca', 'Thhalv10003334m.g' => 'esa', 'Thhalv10005508m.g' => 'esa', 'Thhalv10005643m.g' => 'esa', 'Thhalv10007316m.g' => 'esa', 'Thhalv10009006m.g' => 'esa', 'Thhalv10009309m.g' => 'esa', 'Thhalv10014917m.g' => 'esa', 'Thhalv10014919m.g' => 'esa', 'Thhalv10015393m.g' => 'esa', 'Thhalv10016515m.g' => 'esa', 'Thhalv10029242m.g' => 'esa', 'TPR.G16654' => 'tpr', 'TPR.G20589' => 'tpr', 'TPR.G23029' => 'tpr', 'TPR.G27731' => 'tpr', 'TPR.G28889' => 'tpr', 'TPR.G28899' => 'tpr', 'TPR.G30846' => 'tpr', 'TPR.G5452' => 'tpr', 'TPR.G5713' => 'tpr', 'TPR.G9046' => 'tpr', 'TPR.G9061' => 'tpr', 'TWI09G1075' => 'twi', 'TWI12G0806' => 'twi', 'TWI18G0108' => 'twi', 'TWI53G1361' => 'twi', 'TWI73G0185' => 'twi', 'TWI73G0427' => 'twi', 'unitig_37.g12001' => 'ugi', 'unitig_747.g21660' => 'ugi', 'unitig_748.g7232' => 'ugi', 'unitig_748.g7315' => 'ugi', 'unitig_85.g27262' => 'ugi', 'unitig_92.g28220' => 'ugi', 'vmacro02632' => 'vma', 'vmacro08410' => 'vma', 'vmacro08411' => 'vma', 'vmacro15407' => 'vma', 'VMungo0251G3619' => 'vmu', 'VMungo0720G1204' => 'vmu', 'VMungo0720G1918' => 'vmu', 'VMungo0720G2387' => 'vmu', 'VMungo0720G2961' => 'vmu', 'VMungo1215G2154' => 'vmu', 'VMungo1383G2411' => 'vmu', 'Zm00001eb051130' => 'zma', 'Zm00001eb116830' => 'zma', 'Zm00001eb116850' => 'zma', 'Zm00001eb151740' => 'zma', 'Zm00001eb292360' => 'zma', 'Zm00001eb301640' => 'zma' ), 'gf_id' => 'HOM05D000856', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000856' ), 'data_identifier' => 'HOM05D000856', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000856', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p00010' => 'bna', 'A03p04160' => 'bna', 'A03p17160' => 'bna', 'A04p23370' => 'bna', 'A05p14860' => 'bna', 'A08p37020' => 'bna', 'A09p08050' => 'bna', 'A09p66800' => 'bna', 'A09p67940' => 'bna', 'A10p02680' => 'bna', 'A10p05320' => 'bna', 'Aa31LG1G20560' => 'aar', 'Aa31LG1G20610' => 'aar', 'Aa31LG1G7810' => 'aar', 'Aa31LG5G3590' => 'aar', 'Aa31LG5G6140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3819' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4683' => 'aag', 'Actinidia04480' => 'ach', 'Actinidia05466' => 'ach', 'Actinidia08445' => 'ach', 'Actinidia21170' => 'ach', 'Actinidia24812' => 'ach', 'Actinidia24951' => 'ach', 'Actinidia40088' => 'ach', 'Ah.02g111660' => 'amhyb', 'Ah.11g048900' => 'amhyb', 'Ah.11g049910' => 'amhyb', 'AL1G13870' => 'aly', 'AL1G13880' => 'aly', 'AL1G16760' => 'aly', 'AL390U10020' => 'aly', 'AL4G25520' => 'aly', 'AL6G19890' => 'aly', 'AL6G19900' => 'aly', 'AL6G19910' => 'aly', 'AL8G40100' => 'aly', 'Aqoxy2G03562' => 'aox', 'Aqoxy5G00316' => 'aox', 'Aqoxy5G00926' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1628KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1H403S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2FU6SJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.882I6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8YRY2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YN1SN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AF70II' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZA8L1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F916KL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHRD8H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KTZ8QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S22EMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8M29T' => 'arhy', 'AT1G04270' => 'ath', 'AT1G04280' => 'ath', 'AT1G06750' => 'ath', 'AT1G33850' => 'ath', 'AT2G30630' => 'ath', 'AT5G09490' => 'ath', 'AT5G09500' => 'ath', 'AT5G09510' => 'ath', 'AT5G43640' => 'ath', 'AT5G63070' => 'ath', 'ATR0605G315' => 'atr', 'Atru.chr11.175' => 'acertr', 'Atru.chr11.653' => 'acertr', 'Atru.chr3.1616' => 'acertr', 'Atru.chr4.2230' => 'acertr', 'Atru.chr4.2232' => 'acertr', 'Atru.chr5.1598' => 'acertr', 'Atru.chr5.1600' => 'acertr', 'Atru.chr5.2188' => 'acertr', 'AUR62008326' => 'cqu', 'AUR62011922' => 'cqu', 'AUR62011924' => 'cqu', 'AUR62021771' => 'cqu', 'AUR62032237' => 'cqu', 'AUR62032240' => 'cqu', 'BcaB01g05572' => 'bca', 'BcaB02g10337' => 'bca', 'BcaB04g19944' => 'bca', 'BcaB05g21548' => 'bca', 'BcaB05g21549' => 'bca', 'BcaB05g23227' => 'bca', 'BcaB06g26256' => 'bca', 'BcaB06g26257' => 'bca', 'BcaB06g28379' => 'bca', 'BcaC02g11159' => 'bca', 'BcaC03g13258' => 'bca', 'BcaC03g13259' => 'bca', 'BcaC05g24456' => 'bca', 'BcaC05g24457' => 'bca', 'BcaC07g36922' => 'bca', 'BcaC07g36923' => 'bca', 'BcaC07g42050' => 'bca', 'BcaC07g42176' => 'bca', 'BcaC07g42195' => 'bca', 'BcaC07g42196' => 'bca', 'BcaNung06674' => 'bca', 'BolC2t06351H' => 'bol', 'BolC2t06352H' => 'bol', 'BolC3t12993H' => 'bol', 'BolC4t23525H' => 'bol', 'BolC4t27475H' => 'bol', 'BolC5t29025H' => 'bol', 'BolC5t29026H' => 'bol', 'BolC8t46898H' => 'bol', 'BolC8t46899H' => 'bol', 'BolC8t52630H' => 'bol', 'BolC8t52765H' => 'bol', 'BolC9t53824H' => 'bol', 'BraA03t09760Z' => 'bra', 'BraA03t10990Z' => 'bra', 'BraA05t20413Z' => 'bra', 'BraA08t35602Z' => 'bra', 'BraA09t36458Z' => 'bra', 'BraA09t42018Z' => 'bra', 'BraA09t42129Z' => 'bra', 'BraA10t42536Z' => 'bra', 'BraA10t42537Z' => 'bra', 'C01p10690' => 'bna', 'C02p03890' => 'bna', 'C02p03900' => 'bna', 'C03p04620' => 'bna', 'C04p19870' => 'bna', 'C04p59670' => 'bna', 'C05p02460' => 'bna', 'C05p02470' => 'bna', 'C08p00980' => 'bna', 'C08p00990' => 'bna', 'C08p51030' => 'bna', 'C08p52360' => 'bna', 'C09p09120' => 'bna', 'CAN.G19.15' => 'can', 'CAN.G251.10' => 'can', 'CAN.G251.9' => 'can', 'CAN.G398.24' => 'can', 'CAN.G410.32' => 'can', 'CAN.G881.2' => 'can', 'CANSAT01G3025' => 'cansat', 'CANSAT78G1211' => 'cansat', 'CANSAT78G1218' => 'cansat', 'CANSAT78G1521' => 'cansat', 'CANSAT78G1670' => 'cansat', 'CARHR003600' => 'chi', 'CARHR003610' => 'chi', 'CARHR006290' => 'chi', 'CARHR006430' => 'chi', 'CARHR124110' => 'chi', 'CARHR203870' => 'chi', 'CARHR203880' => 'chi', 'CARHR203890' => 'chi', 'CARHR276880' => 'chi', 'Carub.0001s0346' => 'cru', 'Carub.0001s0347' => 'cru', 'Carub.0001s0607' => 'cru', 'Carub.0003s2768' => 'cru', 'Carub.0003s2769' => 'cru', 'Carub.0004s1178' => 'cru', 'Carub.0006s0806' => 'cru', 'Carub.0006s0807' => 'cru', 'Carub.0006s0808' => 'cru', 'Carub.0008s0501' => 'cru', 'Carub.0008s2379' => 'cru', 'Ca_08655_v3' => 'car', 'Ca_08922_v3' => 'car', 'Ca_08923_v3' => 'car', 'Ca_09119_v3' => 'car', 'Ca_09703_v3' => 'car', 'Ca_09705_v3' => 'car', 'Ca_09835_v3' => 'car', 'Ca_26403_v3' => 'car', 'Ca_30719_v3' => 'car', 'CBR_g17958' => 'cbr', 'CBR_g40516' => 'cbr', 'Cc00_g05350' => 'ccan', 'Cc01_g18690' => 'ccan', 'Cc03_g04830' => 'ccan', 'Cc03_g04850' => 'ccan', 'CDE02G4469' => 'cde', 'CDE06G0883' => 'cde', 'CDE06G1295' => 'cde', 'CDE06G1390' => 'cde', 'CDE07G0584' => 'cde', 'CDE07G1084' => 'cde', 'CDE08G1259' => 'cde', 'Cfa002341' => 'cfa', 'Cfa024337' => 'cfa', 'Ciclev10004749m.g' => 'ccl', 'Ciclev10006127m.g' => 'ccl', 'Ciclev10019720m.g' => 'ccl', 'Ciclev10022652m.g' => 'ccl', 'CiPaw.01G190400' => 'cil', 'CiPaw.01G190500' => 'cil', 'CiPaw.02G116400' => 'cil', 'CiPaw.02G116500' => 'cil', 'CiPaw.04G183000' => 'cil', 'CiPaw.04G183300' => 'cil', 'ClCG05G004610' => 'cla', 'ClCG05G004620' => 'cla', 'ClCG06G006730' => 'cla', 'ClCG06G006740' => 'cla', 'ClCG11G003690' => 'cla', 'COL.COLO4_08276' => 'col', 'COL.COLO4_08277' => 'col', 'COL.COLO4_15787' => 'col', 'COL.COLO4_15789' => 'col', 'Cpa.g.c44815' => 'cpa', 'Cpa.g.sc52.144' => 'cpa', 'Cpa.g.sc58.46' => 'cpa', 'Cpa.g.sc58.47' => 'cpa', 'Cre08.g360900' => 'cre', 'CsaV3_2G013030' => 'csa', 'CsaV3_2G013050' => 'csa', 'CsaV3_2G015620' => 'csa', 'CsaV3_3G012590' => 'csa', 'CsaV3_3G012600' => 'csa', 'CSS0001641' => 'camsi', 'CSS0008310' => 'camsi', 'CSS0013011' => 'camsi', 'CSS0017147' => 'camsi', 'CSS0022970' => 'camsi', 'CSS0025655' => 'camsi', 'CSS0028665' => 'camsi', 'CSS0029117' => 'camsi', 'CSS0032024' => 'camsi', 'CSS0039681' => 'camsi', 'CSS0046516' => 'camsi', 'CSS0050307' => 'camsi', 'DCAR_005871' => 'dca', 'DCAR_007342' => 'dca', 'DCAR_024228' => 'dca', 'DCAR_027277' => 'dca', 'DCAR_030718' => 'dca', 'Dinv20287' => 'din', 'Dinv22461' => 'din', 'Dinv22464' => 'din', 'Dinv29912' => 'din', 'Dinv29913' => 'din', 'Dinv34580' => 'din', 'Dinv34582' => 'din', 'Dinv44632' => 'din', 'Duzib052G0266' => 'dzi', 'Duzib133G0907' => 'dzi', 'Duzib133G1034' => 'dzi', 'Duzib138G0207' => 'dzi', 'Duzib138G0491' => 'dzi', 'Duzib151G0812' => 'dzi', 'Duzib151G1166' => 'dzi', 'Duzib168G0192' => 'dzi', 'Duzib211G0077' => 'dzi', 'Duzib212G0429' => 'dzi', 'Duzib212G0472' => 'dzi', 'ECA233G2617' => 'eca', 'ECA236G4188' => 'eca', 'ECA240G0936' => 'eca', 'ECA240G1129' => 'eca', 'ECA247G0623' => 'eca', 'EL10Ac5g10451' => 'bvu', 'EL10Ac5g10453' => 'bvu', 'EL10Ac5g10894' => 'bvu', 'Eucgr.H00192' => 'egr', 'Eucgr.H00193' => 'egr', 'Eucgr.H00194' => 'egr', 'Eucgr.J01562' => 'egr', 'Eucgr.K03301' => 'egr', 'FAN02G0632' => 'fan', 'FAN05G5378' => 'fan', 'FAN09G3247' => 'fan', 'FAN12G0435' => 'fan', 'FAN12G2426' => 'fan', 'FAN14G1707' => 'fan', 'FAN14G4725' => 'fan', 'FAN15G2071' => 'fan', 'FAN17G3065' => 'fan', 'FAN19G1376' => 'fan', 'FAN20G0354' => 'fan', 'FAN20G2429' => 'fan', 'FAN20G2658' => 'fan', 'FAN24G2343' => 'fan', 'FAN27G2362' => 'fan', 'FAN28G1765' => 'fan', 'FvH4_1g16020' => 'fve', 'FvH4_2g04890' => 'fve', 'FvH4_2g22270' => 'fve', 'FvH4_4g02630' => 'fve', 'FvH4_4g02640' => 'fve', 'FvH4_6g02650' => 'fve', 'Glyma.02G140600' => 'gma', 'Glyma.03G159900' => 'gma', 'Glyma.05G234800' => 'gma', 'Glyma.07G269600' => 'gma', 'Glyma.08G042300' => 'gma', 'Glyma.10G033500' => 'gma', 'Glyma.10G185200' => 'gma', 'Glyma.17G004300' => 'gma', 'Glyma.19G161900' => 'gma', 'Glyma.20G205100' => 'gma', 'Glyma.20G205200' => 'gma', 'Gohir.A01G139101' => 'ghi', 'Gohir.A02G035600' => 'ghi', 'Gohir.A02G117901' => 'ghi', 'Gohir.A07G210100' => 'ghi', 'Gohir.A07G210200' => 'ghi', 'Gohir.A08G061100' => 'ghi', 'Gohir.A09G223000' => 'ghi', 'Gohir.A09G223100' => 'ghi', 'Gohir.A10G113900' => 'ghi', 'Gohir.A10G114000' => 'ghi', 'Gohir.D02G042300' => 'ghi', 'Gohir.D07G216100' => 'ghi', 'Gohir.D07G216200' => 'ghi', 'Gohir.D08G070400' => 'ghi', 'Gohir.D09G225000' => 'ghi', 'Gohir.D09G225100' => 'ghi', 'Gohir.D10G152300' => 'ghi', 'Gohir.D10G153200' => 'ghi', 'Gohir.D11G133701' => 'ghi', 'Gorai.004G074100' => 'gra', 'Gorai.005G046800' => 'gra', 'Gorai.006G246500' => 'gra', 'Gorai.006G246600' => 'gra', 'Gorai.007G142900' => 'gra', 'Gorai.011G171000' => 'gra', 'Gorai.011G171100' => 'gra', 'Gorai.013G104300' => 'gra', 'Gorai.013G104400' => 'gra', 'GSVIVG01000754001' => 'vvi', 'GSVIVG01000756001' => 'vvi', 'GSVIVG01010903001' => 'vvi', 'GSVIVG01017623001' => 'vvi', 'GSVIVG01018113001' => 'vvi', 'GSVIVG01018116001' => 'vvi', 'GSVIVG01018118001' => 'vvi', 'HanXRQChr03g0076211' => 'han', 'HanXRQChr03g0092431' => 'han', 'HanXRQChr03g0092441' => 'han', 'HanXRQChr03g0092591' => 'han', 'HanXRQChr03g0092671' => 'han', 'HanXRQChr03g0092681' => 'han', 'HanXRQChr03g0092691' => 'han', 'HanXRQChr03g0092701' => 'han', 'HanXRQChr03g0092721' => 'han', 'HanXRQChr03g0092731' => 'han', 'HanXRQChr04g0113681' => 'han', 'HanXRQChr10g0281371' => 'han', 'HanXRQChr11g0337141' => 'han', 'HanXRQChr13g0424521' => 'han', 'HanXRQChr13g0424531' => 'han', 'HanXRQChr13g0424541' => 'han', 'HanXRQChr16g0498221' => 'han', 'Haze_04377' => 'cav', 'Haze_11298' => 'cav', 'Haze_24547' => 'cav', 'Haze_24550' => 'cav', 'Haze_26587' => 'cav', 'Hma1.2p1_0650F.1_g195410' => 'hma', 'Hma1.2p1_0893F.1_g233470' => 'hma', 'HPP92_006508' => 'vpl', 'HPP92_024780' => 'vpl', 'Hund02688' => 'sun', 'Hund09380' => 'sun', 'Hund09381' => 'sun', 'Hund09832' => 'sun', 'Hund09833' => 'sun', 'Hund11351' => 'sun', 'Hund11513' => 'sun', 'Lalb_Chr06g0162591' => 'lal', 'Lalb_Chr06g0162601' => 'lal', 'Lalb_Chr06g0169321' => 'lal', 'Lalb_Chr09g0330951' => 'lal', 'Lalb_Chr16g0387631' => 'lal', 'Lalb_Chr21g0306241' => 'lal', 'Lalb_Chr25g0290051' => 'lal', 'Lalb_Chr25g0290061' => 'lal', 'Lalb_Chr25g0290071' => 'lal', 'Lj1g0003876' => 'lja', 'Lj1P1207T36' => 'lonja', 'Lj2C1156G12' => 'lonja', 'Lj3A793G39' => 'lonja', 'Lj3C580G2' => 'lonja', 'Lj3C780G2' => 'lonja', 'Lj3C780T4' => 'lonja', 'Lj3C793G9' => 'lonja', 'Lj4g0012960' => 'lja', 'Lj5g0021252' => 'lja', 'Lj5g0021484' => 'lja', 'Lj5g0024528' => 'lja', 'Lj6A399T12' => 'lonja', 'Lj6A656G65' => 'lonja', 'Lsat_1_v5_gn_3_125500' => 'lsa', 'Lsat_1_v5_gn_3_125540' => 'lsa', 'Lsat_1_v5_gn_5_72701' => 'lsa', 'Lsat_1_v5_gn_8_91560' => 'lsa', 'Lsat_1_v5_gn_9_9640' => 'lsa', 'Manes.01G200600' => 'mes', 'Manes.01G200700' => 'mes', 'Manes.03G168900' => 'mes', 'Manes.03G169000' => 'mes', 'Manes.05G085801' => 'mes', 'Manes.05G086200' => 'mes', 'Manes.15G036700' => 'mes', 'Manes.15G036900' => 'mes', 'Mapoly0004s0172' => 'mpo', 'Mapoly0023s0001' => 'mpo', 'Mapoly0142s0012' => 'mpo', 'MBI01_g32854_MAGBIO' => 'mbi', 'MBI11_g24427_MAGBIO' => 'mbi', 'MBI11_g47319_MAGBIO' => 'mbi', 'MCO01G433' => 'mco', 'MD00G1187800' => 'mdo', 'MD04G1226500' => 'mdo', 'MD05G1203900' => 'mdo', 'MD10G1191100' => 'mdo', 'MD12G1243500' => 'mdo', 'MD13G1207000' => 'mdo', 'MD13G1207100' => 'mdo', 'MD16G1208600' => 'mdo', 'Medtr1g050352' => 'mtr', 'Medtr1g070385' => 'mtr', 'Medtr1g070450' => 'mtr', 'Medtr1g075200' => 'mtr', 'Medtr1g075250' => 'mtr', 'Medtr1g075260' => 'mtr', 'Medtr1g475250' => 'mtr', 'Medtr4g075450' => 'mtr', 'Medtr7g096300' => 'mtr', 'Medtr8g105110' => 'mtr', 'MELO3C006470.2' => 'cme', 'MELO3C006471.2' => 'cme', 'MELO3C020772.2' => 'cme', 'MELO3C026780.2' => 'cme', 'MELO3C026781.2' => 'cme', 'Migut.D00390' => 'egut', 'Migut.G00435' => 'egut', 'Migut.G00436' => 'egut', 'Migut.G00718' => 'egut', 'MSTRG.21891' => 'ama', 'MSTRG.26910' => 'ama', 'MSTRG.4099' => 'ama', 'MSTRG.9925' => 'ama', 'Nitab4.5_0000165g0010' => 'nta', 'Nitab4.5_0000209g0180' => 'nta', 'Nitab4.5_0000244g0440' => 'nta', 'Nitab4.5_0000525g0220' => 'nta', 'Nitab4.5_0001597g0020' => 'nta', 'Nitab4.5_0001878g0040' => 'nta', 'Nitab4.5_0001878g0060' => 'nta', 'Nitab4.5_0002838g0100' => 'nta', 'Nitab4.5_0002838g0120' => 'nta', 'Nitab4.5_0004798g0030' => 'nta', 'Nitab4.5_0005420g0010' => 'nta', 'Nitab4.5_0005507g0010' => 'nta', 'Nitab4.5_0005574g0020' => 'nta', 'Nitab4.5_0005838g0010' => 'nta', 'Nitab4.5_0010580g0020' => 'nta', 'Nn1g02599' => 'nnu', 'Nn1g02608' => 'nnu', 'Nn3g17742' => 'nnu', 'Nn3g19534' => 'nnu', 'Nn3g19535' => 'nnu', 'Oeu008790.1' => 'oeu', 'Oeu008792.1' => 'oeu', 'Oeu032590.1' => 'oeu', 'Oeu035349.1' => 'oeu', 'Oeu049791.1' => 'oeu', 'Os01g0774500' => 'osa', 'Os03g0628800' => 'osa', 'Os03g0798600' => 'osa', 'Os05g0508800' => 'osa', 'Peaxi162Scf00036g02018' => 'pax', 'Peaxi162Scf00578g00032' => 'pax', 'Peaxi162Scf00578g00317' => 'pax', 'Peaxi162Scf00785g00114' => 'pax', 'Peaxi162Scf00813g00119' => 'pax', 'Peaxi162Scf00906g00227' => 'pax', 'PGR004G0875' => 'pgr', 'PGR004G2424' => 'pgr', 'PGR031G1239' => 'pgr', 'PGR031G2474' => 'pgr', 'PGR044G0423' => 'pgr', 'PGSC0003DMG400001128' => 'stu', 'PGSC0003DMG400007336' => 'stu', 'PGSC0003DMG400016318' => 'stu', 'PGSC0003DMG400016319' => 'stu', 'PGSC0003DMG400018074' => 'stu', 'Phvul.001G157700' => 'pvu', 'Phvul.002G148550' => 'pvu', 'Phvul.002G320200' => 'pvu', 'Phvul.003G089200' => 'pvu', 'Phvul.007G126000' => 'pvu', 'Phvul.007G126100' => 'pvu', 'Phvul.007G178000' => 'pvu', 'Phvul.007G178200' => 'pvu', 'Potri.002G043000' => 'ptr', 'Potri.002G043200' => 'ptr', 'Potri.003G123750' => 'ptr', 'Potri.005G055401' => 'ptr', 'Potri.005G219700' => 'ptr', 'Potri.005G220000' => 'ptr', 'Potri.008G161901' => 'ptr', 'Potri.008G162000' => 'ptr', 'Potri.008G162400' => 'ptr', 'Potri.010G076900' => 'ptr', 'Pp3c12_9180' => 'ppa', 'Pp3c13_19770' => 'ppa', 'Pp3c14_22950' => 'ppa', 'Pp3c16_12160' => 'ppa', 'Pp3c27_7820' => 'ppa', 'Pp3c2_3490' => 'ppa', 'Pp3c3_23700' => 'ppa', 'Pp3c3_36520' => 'ppa', 'Pp3c4_15250' => 'ppa', 'PRCOL_00007002' => 'pco', 'Prupe.1G030600' => 'ppe', 'Prupe.1G030700' => 'ppe', 'Prupe.6G345200' => 'ppe', 'Prupe.8G230300' => 'ppe', 'Prupe.8G230500' => 'ppe', 'Psat3g059600' => 'psa', 'Psat5g200920' => 'psa', 'Psat6g056440' => 'psa', 'Psat6g057360' => 'psa', 'Psat6g134120' => 'psa', 'Psat6g134160' => 'psa', 'Psat7g008640' => 'psa', 'Psat7g185240' => 'psa', 'PSO017G1330' => 'pso', 'PSO063G6097' => 'pso', 'PSO170G0835' => 'pso', 'PSO170G2499' => 'pso', 'PSO210G5058' => 'pso', 'PSO210G6154' => 'pso', 'PSO585G0031' => 'pso', 'PSO832G0264' => 'pso', 'PSO832G4288' => 'pso', 'QL03p027355' => 'qlo', 'QL03p027430' => 'qlo', 'QL04p081380' => 'qlo', 'QL06p015642' => 'qlo', 'QL06p015650' => 'qlo', 'QL06p015686' => 'qlo', 'QL12p042927' => 'qlo', 'QL93p1863_0035' => 'qlo', 'RcHm_v2.0_Chr3g0450581' => 'rch', 'RcHm_v2.0_Chr4g0390371' => 'rch', 'RcHm_v2.0_Chr4g0390381' => 'rch', 'RcHm_v2.0_Chr4g0390491' => 'rch', 'RcHm_v2.0_Chr4g0390501' => 'rch', 'RcHm_v2.0_Chr6g0289231' => 'rch', 'Rhsim04G0190400' => 'rsi', 'Rhsim04G0190500' => 'rsi', 'Rhsim04G0190600' => 'rsi', 'Rhsim13G0031400' => 'rsi', 'Rhsim13G0165600' => 'rsi', 'RhsimUnG0114600' => 'rsi', 'RhsimUnG0114700' => 'rsi', 'Sabra02G0034800' => 'sbr', 'Sabra02G0035100' => 'sbr', 'Sabra05G0168600' => 'sbr', 'Sabra05G0168800' => 'sbr', 'Sabra08G0123700' => 'sbr', 'Sabra10G0031900' => 'sbr', 'Sabra13G0039000' => 'sbr', 'SalBow2G0782' => 'sbo', 'SalBow2G1403' => 'sbo', 'SalBow4G0074' => 'sbo', 'SalBow4G2635' => 'sbo', 'SalBow5G3010' => 'sbo', 'Sc05g0000870' => 'sci', 'Sc05g0000890' => 'sci', 'Sc13g0005000' => 'sci', 'Sc13g0005030' => 'sci', 'Sc19g0003790' => 'sci', 'Sc19g0003800' => 'sci', 'Sed0003467' => 'sed', 'Sed0009355' => 'sed', 'Sed0009894' => 'sed', 'Sed0011972' => 'sed', 'Sed0021483' => 'sed', 'Sed0021750' => 'sed', 'Sed0026279' => 'sed', 'SEGI_05312' => 'sgi', 'SEGI_10112' => 'sgi', 'SEGI_15835' => 'sgi', 'SEGI_30386' => 'sgi', 'SEGI_34122' => 'sgi', 'SEGI_35063' => 'sgi', 'SGA_v2.0_scaffold101G29794' => 'sas', 'SGA_v2.0_scaffold1G00573' => 'sas', 'SGA_v2.0_scaffold79G25637' => 'sas', 'SGA_v2.0_scaffold88G27283' => 'sas', 'SGA_v2.0_scaffold88G27285' => 'sas', 'SGA_v2.0_scaffold88G27331' => 'sas', 'SHI09937' => 'shi', 'SMO119G0302' => 'smo', 'SMO137G0231' => 'smo', 'SMO367G1151' => 'smo', 'Solyc02g082000.3' => 'sly', 'Solyc06g031670.3' => 'sly', 'Solyc06g053810.3' => 'sly', 'Solyc07g025457.1' => 'sly', 'Solyc08g059740.1' => 'sly', 'Solyc08g059750.3' => 'sly', 'Solyc09g083370.3' => 'sly', 'Solyc12g038950.3' => 'sly', 'Sopen02g026630' => 'spe', 'Sopen06g018930' => 'spe', 'Sopen06g018940' => 'spe', 'Sopen08g009460' => 'spe', 'Sopen09g032290' => 'spe', 'Sp1g03080' => 'spa', 'Sp1g03090' => 'spa', 'Sp1g05480' => 'spa', 'Sp2g07860' => 'spa', 'Sp2g08430' => 'spa', 'Sp2g08440' => 'spa', 'Sp2g26200' => 'spa', 'Sp4g13170' => 'spa', 'Sp6g33840' => 'spa', 'SpUn1204_0010' => 'spa', 'TAR365G0908' => 'tar', 'TAR381G1270' => 'tar', 'TAR381G1651' => 'tar', 'TAR625G1131' => 'tar', 'TAR633G0962' => 'tar', 'TAR633G1729' => 'tar', 'TAR633G1864' => 'tar', 'TAR636G0221' => 'tar', 'TAR636G0314' => 'tar', 'TAR636G3202' => 'tar', 'THA.LOC104800805' => 'tha', 'THA.LOC104801096' => 'tha', 'THA.LOC104801555' => 'tha', 'THA.LOC104808491' => 'tha', 'THA.LOC104808595' => 'tha', 'THA.LOC104815985' => 'tha', 'THA.LOC104822250' => 'tha', 'THA.LOC104826071' => 'tha', 'Thecc.01G265200' => 'tca', 'Thecc.01G265300' => 'tca', 'Thecc.01G265700' => 'tca', 'Thecc.03G109100' => 'tca', 'Thecc.04G245900' => 'tca', 'Thecc.04G246000' => 'tca', 'Thhalv10003334m.g' => 'esa', 'Thhalv10005508m.g' => 'esa', 'Thhalv10005643m.g' => 'esa', 'Thhalv10007316m.g' => 'esa', 'Thhalv10009006m.g' => 'esa', 'Thhalv10009309m.g' => 'esa', 'Thhalv10014917m.g' => 'esa', 'Thhalv10014919m.g' => 'esa', 'Thhalv10015393m.g' => 'esa', 'Thhalv10016515m.g' => 'esa', 'Thhalv10029242m.g' => 'esa', 'TPR.G16654' => 'tpr', 'TPR.G20589' => 'tpr', 'TPR.G23029' => 'tpr', 'TPR.G27731' => 'tpr', 'TPR.G28889' => 'tpr', 'TPR.G28899' => 'tpr', 'TPR.G30846' => 'tpr', 'TPR.G5452' => 'tpr', 'TPR.G5713' => 'tpr', 'TPR.G9046' => 'tpr', 'TPR.G9061' => 'tpr', 'TWI09G1075' => 'twi', 'TWI12G0806' => 'twi', 'TWI18G0108' => 'twi', 'TWI53G1361' => 'twi', 'TWI73G0185' => 'twi', 'TWI73G0427' => 'twi', 'unitig_37.g12001' => 'ugi', 'unitig_747.g21660' => 'ugi', 'unitig_748.g7232' => 'ugi', 'unitig_748.g7315' => 'ugi', 'unitig_85.g27262' => 'ugi', 'unitig_92.g28220' => 'ugi', 'vmacro02632' => 'vma', 'vmacro08410' => 'vma', 'vmacro08411' => 'vma', 'vmacro15407' => 'vma', 'VMungo0251G3619' => 'vmu', 'VMungo0720G1204' => 'vmu', 'VMungo0720G1918' => 'vmu', 'VMungo0720G2387' => 'vmu', 'VMungo0720G2961' => 'vmu', 'VMungo1215G2154' => 'vmu', 'VMungo1383G2411' => 'vmu', 'Zm00001eb051130' => 'zma', 'Zm00001eb116830' => 'zma', 'Zm00001eb116850' => 'zma', 'Zm00001eb151740' => 'zma', 'Zm00001eb292360' => 'zma', 'Zm00001eb301640' => 'zma' ) $gf_id = 'HOM05D000856' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000856' ) $data_identifier = 'HOM05D000856' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 13, 'ath' => (int) 10, 'atr' => (int) 1, 'acertr' => (int) 8, 'cqu' => (int) 6, 'bca' => (int) 21, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 11, 'car' => (int) 9, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 8, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 5, 'fan' => (int) 16, 'fve' => (int) 6, 'gma' => (int) 11, 'ghi' => (int) 19, 'gra' => (int) 9, 'vvi' => (int) 7, 'han' => (int) 17, 'cav' => (int) 5, 'hma' => (int) 2, 'vpl' => (int) 2, 'sun' => (int) 7, 'lal' => (int) 9, 'lja' => (int) 5, 'lonja' => (int) 9, 'lsa' => (int) 5, 'mes' => (int) 8, 'mpo' => (int) 3, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 10, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 15, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 9, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 9, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 6, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 5, 'spa' => (int) 10, 'tar' => (int) 10, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 11, 'tpr' => (int) 11, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 4, 'vmu' => (int) 7, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb301640' $species_info = array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ) $local_species = 'vmu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000856', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p00010' => 'bna', 'A03p04160' => 'bna', 'A03p17160' => 'bna', 'A04p23370' => 'bna', 'A05p14860' => 'bna', 'A08p37020' => 'bna', 'A09p08050' => 'bna', 'A09p66800' => 'bna', 'A09p67940' => 'bna', 'A10p02680' => 'bna', 'A10p05320' => 'bna', 'Aa31LG1G20560' => 'aar', 'Aa31LG1G20610' => 'aar', 'Aa31LG1G7810' => 'aar', 'Aa31LG5G3590' => 'aar', 'Aa31LG5G6140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3819' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4683' => 'aag', 'Actinidia04480' => 'ach', 'Actinidia05466' => 'ach', 'Actinidia08445' => 'ach', 'Actinidia21170' => 'ach', 'Actinidia24812' => 'ach', 'Actinidia24951' => 'ach', 'Actinidia40088' => 'ach', 'Ah.02g111660' => 'amhyb', 'Ah.11g048900' => 'amhyb', 'Ah.11g049910' => 'amhyb', 'AL1G13870' => 'aly', 'AL1G13880' => 'aly', 'AL1G16760' => 'aly', 'AL390U10020' => 'aly', 'AL4G25520' => 'aly', 'AL6G19890' => 'aly', 'AL6G19900' => 'aly', 'AL6G19910' => 'aly', 'AL8G40100' => 'aly', 'Aqoxy2G03562' => 'aox', 'Aqoxy5G00316' => 'aox', 'Aqoxy5G00926' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1628KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1H403S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2FU6SJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.882I6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8YRY2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YN1SN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AF70II' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZA8L1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F916KL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHRD8H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KTZ8QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S22EMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8M29T' => 'arhy', 'AT1G04270' => 'ath', 'AT1G04280' => 'ath', 'AT1G06750' => 'ath', 'AT1G33850' => 'ath', 'AT2G30630' => 'ath', 'AT5G09490' => 'ath', 'AT5G09500' => 'ath', 'AT5G09510' => 'ath', 'AT5G43640' => 'ath', 'AT5G63070' => 'ath', 'ATR0605G315' => 'atr', 'Atru.chr11.175' => 'acertr', 'Atru.chr11.653' => 'acertr', 'Atru.chr3.1616' => 'acertr', 'Atru.chr4.2230' => 'acertr', 'Atru.chr4.2232' => 'acertr', 'Atru.chr5.1598' => 'acertr', 'Atru.chr5.1600' => 'acertr', 'Atru.chr5.2188' => 'acertr', 'AUR62008326' => 'cqu', 'AUR62011922' => 'cqu', 'AUR62011924' => 'cqu', 'AUR62021771' => 'cqu', 'AUR62032237' => 'cqu', 'AUR62032240' => 'cqu', 'BcaB01g05572' => 'bca', 'BcaB02g10337' => 'bca', 'BcaB04g19944' => 'bca', 'BcaB05g21548' => 'bca', 'BcaB05g21549' => 'bca', 'BcaB05g23227' => 'bca', 'BcaB06g26256' => 'bca', 'BcaB06g26257' => 'bca', 'BcaB06g28379' => 'bca', 'BcaC02g11159' => 'bca', 'BcaC03g13258' => 'bca', 'BcaC03g13259' => 'bca', 'BcaC05g24456' => 'bca', 'BcaC05g24457' => 'bca', 'BcaC07g36922' => 'bca', 'BcaC07g36923' => 'bca', 'BcaC07g42050' => 'bca', 'BcaC07g42176' => 'bca', 'BcaC07g42195' => 'bca', 'BcaC07g42196' => 'bca', 'BcaNung06674' => 'bca', 'BolC2t06351H' => 'bol', 'BolC2t06352H' => 'bol', 'BolC3t12993H' => 'bol', 'BolC4t23525H' => 'bol', 'BolC4t27475H' => 'bol', 'BolC5t29025H' => 'bol', 'BolC5t29026H' => 'bol', 'BolC8t46898H' => 'bol', 'BolC8t46899H' => 'bol', 'BolC8t52630H' => 'bol', 'BolC8t52765H' => 'bol', 'BolC9t53824H' => 'bol', 'BraA03t09760Z' => 'bra', 'BraA03t10990Z' => 'bra', 'BraA05t20413Z' => 'bra', 'BraA08t35602Z' => 'bra', 'BraA09t36458Z' => 'bra', 'BraA09t42018Z' => 'bra', 'BraA09t42129Z' => 'bra', 'BraA10t42536Z' => 'bra', 'BraA10t42537Z' => 'bra', 'C01p10690' => 'bna', 'C02p03890' => 'bna', 'C02p03900' => 'bna', 'C03p04620' => 'bna', 'C04p19870' => 'bna', 'C04p59670' => 'bna', 'C05p02460' => 'bna', 'C05p02470' => 'bna', 'C08p00980' => 'bna', 'C08p00990' => 'bna', 'C08p51030' => 'bna', 'C08p52360' => 'bna', 'C09p09120' => 'bna', 'CAN.G19.15' => 'can', 'CAN.G251.10' => 'can', 'CAN.G251.9' => 'can', 'CAN.G398.24' => 'can', 'CAN.G410.32' => 'can', 'CAN.G881.2' => 'can', 'CANSAT01G3025' => 'cansat', 'CANSAT78G1211' => 'cansat', 'CANSAT78G1218' => 'cansat', 'CANSAT78G1521' => 'cansat', 'CANSAT78G1670' => 'cansat', 'CARHR003600' => 'chi', 'CARHR003610' => 'chi', 'CARHR006290' => 'chi', 'CARHR006430' => 'chi', 'CARHR124110' => 'chi', 'CARHR203870' => 'chi', 'CARHR203880' => 'chi', 'CARHR203890' => 'chi', 'CARHR276880' => 'chi', 'Carub.0001s0346' => 'cru', 'Carub.0001s0347' => 'cru', 'Carub.0001s0607' => 'cru', 'Carub.0003s2768' => 'cru', 'Carub.0003s2769' => 'cru', 'Carub.0004s1178' => 'cru', 'Carub.0006s0806' => 'cru', 'Carub.0006s0807' => 'cru', 'Carub.0006s0808' => 'cru', 'Carub.0008s0501' => 'cru', 'Carub.0008s2379' => 'cru', 'Ca_08655_v3' => 'car', 'Ca_08922_v3' => 'car', 'Ca_08923_v3' => 'car', 'Ca_09119_v3' => 'car', 'Ca_09703_v3' => 'car', 'Ca_09705_v3' => 'car', 'Ca_09835_v3' => 'car', 'Ca_26403_v3' => 'car', 'Ca_30719_v3' => 'car', 'CBR_g17958' => 'cbr', 'CBR_g40516' => 'cbr', 'Cc00_g05350' => 'ccan', 'Cc01_g18690' => 'ccan', 'Cc03_g04830' => 'ccan', 'Cc03_g04850' => 'ccan', 'CDE02G4469' => 'cde', 'CDE06G0883' => 'cde', 'CDE06G1295' => 'cde', 'CDE06G1390' => 'cde', 'CDE07G0584' => 'cde', 'CDE07G1084' => 'cde', 'CDE08G1259' => 'cde', 'Cfa002341' => 'cfa', 'Cfa024337' => 'cfa', 'Ciclev10004749m.g' => 'ccl', 'Ciclev10006127m.g' => 'ccl', 'Ciclev10019720m.g' => 'ccl', 'Ciclev10022652m.g' => 'ccl', 'CiPaw.01G190400' => 'cil', 'CiPaw.01G190500' => 'cil', 'CiPaw.02G116400' => 'cil', 'CiPaw.02G116500' => 'cil', 'CiPaw.04G183000' => 'cil', 'CiPaw.04G183300' => 'cil', 'ClCG05G004610' => 'cla', 'ClCG05G004620' => 'cla', 'ClCG06G006730' => 'cla', 'ClCG06G006740' => 'cla', 'ClCG11G003690' => 'cla', 'COL.COLO4_08276' => 'col', 'COL.COLO4_08277' => 'col', 'COL.COLO4_15787' => 'col', 'COL.COLO4_15789' => 'col', 'Cpa.g.c44815' => 'cpa', 'Cpa.g.sc52.144' => 'cpa', 'Cpa.g.sc58.46' => 'cpa', 'Cpa.g.sc58.47' => 'cpa', 'Cre08.g360900' => 'cre', 'CsaV3_2G013030' => 'csa', 'CsaV3_2G013050' => 'csa', 'CsaV3_2G015620' => 'csa', 'CsaV3_3G012590' => 'csa', 'CsaV3_3G012600' => 'csa', 'CSS0001641' => 'camsi', 'CSS0008310' => 'camsi', 'CSS0013011' => 'camsi', 'CSS0017147' => 'camsi', 'CSS0022970' => 'camsi', 'CSS0025655' => 'camsi', 'CSS0028665' => 'camsi', 'CSS0029117' => 'camsi', 'CSS0032024' => 'camsi', 'CSS0039681' => 'camsi', 'CSS0046516' => 'camsi', 'CSS0050307' => 'camsi', 'DCAR_005871' => 'dca', 'DCAR_007342' => 'dca', 'DCAR_024228' => 'dca', 'DCAR_027277' => 'dca', 'DCAR_030718' => 'dca', 'Dinv20287' => 'din', 'Dinv22461' => 'din', 'Dinv22464' => 'din', 'Dinv29912' => 'din', 'Dinv29913' => 'din', 'Dinv34580' => 'din', 'Dinv34582' => 'din', 'Dinv44632' => 'din', 'Duzib052G0266' => 'dzi', 'Duzib133G0907' => 'dzi', 'Duzib133G1034' => 'dzi', 'Duzib138G0207' => 'dzi', 'Duzib138G0491' => 'dzi', 'Duzib151G0812' => 'dzi', 'Duzib151G1166' => 'dzi', 'Duzib168G0192' => 'dzi', 'Duzib211G0077' => 'dzi', 'Duzib212G0429' => 'dzi', 'Duzib212G0472' => 'dzi', 'ECA233G2617' => 'eca', 'ECA236G4188' => 'eca', 'ECA240G0936' => 'eca', 'ECA240G1129' => 'eca', 'ECA247G0623' => 'eca', 'EL10Ac5g10451' => 'bvu', 'EL10Ac5g10453' => 'bvu', 'EL10Ac5g10894' => 'bvu', 'Eucgr.H00192' => 'egr', 'Eucgr.H00193' => 'egr', 'Eucgr.H00194' => 'egr', 'Eucgr.J01562' => 'egr', 'Eucgr.K03301' => 'egr', 'FAN02G0632' => 'fan', 'FAN05G5378' => 'fan', 'FAN09G3247' => 'fan', 'FAN12G0435' => 'fan', 'FAN12G2426' => 'fan', 'FAN14G1707' => 'fan', 'FAN14G4725' => 'fan', 'FAN15G2071' => 'fan', 'FAN17G3065' => 'fan', 'FAN19G1376' => 'fan', 'FAN20G0354' => 'fan', 'FAN20G2429' => 'fan', 'FAN20G2658' => 'fan', 'FAN24G2343' => 'fan', 'FAN27G2362' => 'fan', 'FAN28G1765' => 'fan', 'FvH4_1g16020' => 'fve', 'FvH4_2g04890' => 'fve', 'FvH4_2g22270' => 'fve', 'FvH4_4g02630' => 'fve', 'FvH4_4g02640' => 'fve', 'FvH4_6g02650' => 'fve', 'Glyma.02G140600' => 'gma', 'Glyma.03G159900' => 'gma', 'Glyma.05G234800' => 'gma', 'Glyma.07G269600' => 'gma', 'Glyma.08G042300' => 'gma', 'Glyma.10G033500' => 'gma', 'Glyma.10G185200' => 'gma', 'Glyma.17G004300' => 'gma', 'Glyma.19G161900' => 'gma', 'Glyma.20G205100' => 'gma', 'Glyma.20G205200' => 'gma', 'Gohir.A01G139101' => 'ghi', 'Gohir.A02G035600' => 'ghi', 'Gohir.A02G117901' => 'ghi', 'Gohir.A07G210100' => 'ghi', 'Gohir.A07G210200' => 'ghi', 'Gohir.A08G061100' => 'ghi', 'Gohir.A09G223000' => 'ghi', 'Gohir.A09G223100' => 'ghi', 'Gohir.A10G113900' => 'ghi', 'Gohir.A10G114000' => 'ghi', 'Gohir.D02G042300' => 'ghi', 'Gohir.D07G216100' => 'ghi', 'Gohir.D07G216200' => 'ghi', 'Gohir.D08G070400' => 'ghi', 'Gohir.D09G225000' => 'ghi', 'Gohir.D09G225100' => 'ghi', 'Gohir.D10G152300' => 'ghi', 'Gohir.D10G153200' => 'ghi', 'Gohir.D11G133701' => 'ghi', 'Gorai.004G074100' => 'gra', 'Gorai.005G046800' => 'gra', 'Gorai.006G246500' => 'gra', 'Gorai.006G246600' => 'gra', 'Gorai.007G142900' => 'gra', 'Gorai.011G171000' => 'gra', 'Gorai.011G171100' => 'gra', 'Gorai.013G104300' => 'gra', 'Gorai.013G104400' => 'gra', 'GSVIVG01000754001' => 'vvi', 'GSVIVG01000756001' => 'vvi', 'GSVIVG01010903001' => 'vvi', 'GSVIVG01017623001' => 'vvi', 'GSVIVG01018113001' => 'vvi', 'GSVIVG01018116001' => 'vvi', 'GSVIVG01018118001' => 'vvi', 'HanXRQChr03g0076211' => 'han', 'HanXRQChr03g0092431' => 'han', 'HanXRQChr03g0092441' => 'han', 'HanXRQChr03g0092591' => 'han', 'HanXRQChr03g0092671' => 'han', 'HanXRQChr03g0092681' => 'han', 'HanXRQChr03g0092691' => 'han', 'HanXRQChr03g0092701' => 'han', 'HanXRQChr03g0092721' => 'han', 'HanXRQChr03g0092731' => 'han', 'HanXRQChr04g0113681' => 'han', 'HanXRQChr10g0281371' => 'han', 'HanXRQChr11g0337141' => 'han', 'HanXRQChr13g0424521' => 'han', 'HanXRQChr13g0424531' => 'han', 'HanXRQChr13g0424541' => 'han', 'HanXRQChr16g0498221' => 'han', 'Haze_04377' => 'cav', 'Haze_11298' => 'cav', 'Haze_24547' => 'cav', 'Haze_24550' => 'cav', 'Haze_26587' => 'cav', 'Hma1.2p1_0650F.1_g195410' => 'hma', 'Hma1.2p1_0893F.1_g233470' => 'hma', 'HPP92_006508' => 'vpl', 'HPP92_024780' => 'vpl', 'Hund02688' => 'sun', 'Hund09380' => 'sun', 'Hund09381' => 'sun', 'Hund09832' => 'sun', 'Hund09833' => 'sun', 'Hund11351' => 'sun', 'Hund11513' => 'sun', 'Lalb_Chr06g0162591' => 'lal', 'Lalb_Chr06g0162601' => 'lal', 'Lalb_Chr06g0169321' => 'lal', 'Lalb_Chr09g0330951' => 'lal', 'Lalb_Chr16g0387631' => 'lal', 'Lalb_Chr21g0306241' => 'lal', 'Lalb_Chr25g0290051' => 'lal', 'Lalb_Chr25g0290061' => 'lal', 'Lalb_Chr25g0290071' => 'lal', 'Lj1g0003876' => 'lja', 'Lj1P1207T36' => 'lonja', 'Lj2C1156G12' => 'lonja', 'Lj3A793G39' => 'lonja', 'Lj3C580G2' => 'lonja', 'Lj3C780G2' => 'lonja', 'Lj3C780T4' => 'lonja', 'Lj3C793G9' => 'lonja', 'Lj4g0012960' => 'lja', 'Lj5g0021252' => 'lja', 'Lj5g0021484' => 'lja', 'Lj5g0024528' => 'lja', 'Lj6A399T12' => 'lonja', 'Lj6A656G65' => 'lonja', 'Lsat_1_v5_gn_3_125500' => 'lsa', 'Lsat_1_v5_gn_3_125540' => 'lsa', 'Lsat_1_v5_gn_5_72701' => 'lsa', 'Lsat_1_v5_gn_8_91560' => 'lsa', 'Lsat_1_v5_gn_9_9640' => 'lsa', 'Manes.01G200600' => 'mes', 'Manes.01G200700' => 'mes', 'Manes.03G168900' => 'mes', 'Manes.03G169000' => 'mes', 'Manes.05G085801' => 'mes', 'Manes.05G086200' => 'mes', 'Manes.15G036700' => 'mes', 'Manes.15G036900' => 'mes', 'Mapoly0004s0172' => 'mpo', 'Mapoly0023s0001' => 'mpo', 'Mapoly0142s0012' => 'mpo', 'MBI01_g32854_MAGBIO' => 'mbi', 'MBI11_g24427_MAGBIO' => 'mbi', 'MBI11_g47319_MAGBIO' => 'mbi', 'MCO01G433' => 'mco', 'MD00G1187800' => 'mdo', 'MD04G1226500' => 'mdo', 'MD05G1203900' => 'mdo', 'MD10G1191100' => 'mdo', 'MD12G1243500' => 'mdo', 'MD13G1207000' => 'mdo', 'MD13G1207100' => 'mdo', 'MD16G1208600' => 'mdo', 'Medtr1g050352' => 'mtr', 'Medtr1g070385' => 'mtr', 'Medtr1g070450' => 'mtr', 'Medtr1g075200' => 'mtr', 'Medtr1g075250' => 'mtr', 'Medtr1g075260' => 'mtr', 'Medtr1g475250' => 'mtr', 'Medtr4g075450' => 'mtr', 'Medtr7g096300' => 'mtr', 'Medtr8g105110' => 'mtr', 'MELO3C006470.2' => 'cme', 'MELO3C006471.2' => 'cme', 'MELO3C020772.2' => 'cme', 'MELO3C026780.2' => 'cme', 'MELO3C026781.2' => 'cme', 'Migut.D00390' => 'egut', 'Migut.G00435' => 'egut', 'Migut.G00436' => 'egut', 'Migut.G00718' => 'egut', 'MSTRG.21891' => 'ama', 'MSTRG.26910' => 'ama', 'MSTRG.4099' => 'ama', 'MSTRG.9925' => 'ama', 'Nitab4.5_0000165g0010' => 'nta', 'Nitab4.5_0000209g0180' => 'nta', 'Nitab4.5_0000244g0440' => 'nta', 'Nitab4.5_0000525g0220' => 'nta', 'Nitab4.5_0001597g0020' => 'nta', 'Nitab4.5_0001878g0040' => 'nta', 'Nitab4.5_0001878g0060' => 'nta', 'Nitab4.5_0002838g0100' => 'nta', 'Nitab4.5_0002838g0120' => 'nta', 'Nitab4.5_0004798g0030' => 'nta', 'Nitab4.5_0005420g0010' => 'nta', 'Nitab4.5_0005507g0010' => 'nta', 'Nitab4.5_0005574g0020' => 'nta', 'Nitab4.5_0005838g0010' => 'nta', 'Nitab4.5_0010580g0020' => 'nta', 'Nn1g02599' => 'nnu', 'Nn1g02608' => 'nnu', 'Nn3g17742' => 'nnu', 'Nn3g19534' => 'nnu', 'Nn3g19535' => 'nnu', 'Oeu008790.1' => 'oeu', 'Oeu008792.1' => 'oeu', 'Oeu032590.1' => 'oeu', 'Oeu035349.1' => 'oeu', 'Oeu049791.1' => 'oeu', 'Os01g0774500' => 'osa', 'Os03g0628800' => 'osa', 'Os03g0798600' => 'osa', 'Os05g0508800' => 'osa', 'Peaxi162Scf00036g02018' => 'pax', 'Peaxi162Scf00578g00032' => 'pax', 'Peaxi162Scf00578g00317' => 'pax', 'Peaxi162Scf00785g00114' => 'pax', 'Peaxi162Scf00813g00119' => 'pax', 'Peaxi162Scf00906g00227' => 'pax', 'PGR004G0875' => 'pgr', 'PGR004G2424' => 'pgr', 'PGR031G1239' => 'pgr', 'PGR031G2474' => 'pgr', 'PGR044G0423' => 'pgr', 'PGSC0003DMG400001128' => 'stu', 'PGSC0003DMG400007336' => 'stu', 'PGSC0003DMG400016318' => 'stu', 'PGSC0003DMG400016319' => 'stu', 'PGSC0003DMG400018074' => 'stu', 'Phvul.001G157700' => 'pvu', 'Phvul.002G148550' => 'pvu', 'Phvul.002G320200' => 'pvu', 'Phvul.003G089200' => 'pvu', 'Phvul.007G126000' => 'pvu', 'Phvul.007G126100' => 'pvu', 'Phvul.007G178000' => 'pvu', 'Phvul.007G178200' => 'pvu', 'Potri.002G043000' => 'ptr', 'Potri.002G043200' => 'ptr', 'Potri.003G123750' => 'ptr', 'Potri.005G055401' => 'ptr', 'Potri.005G219700' => 'ptr', 'Potri.005G220000' => 'ptr', 'Potri.008G161901' => 'ptr', 'Potri.008G162000' => 'ptr', 'Potri.008G162400' => 'ptr', 'Potri.010G076900' => 'ptr', 'Pp3c12_9180' => 'ppa', 'Pp3c13_19770' => 'ppa', 'Pp3c14_22950' => 'ppa', 'Pp3c16_12160' => 'ppa', 'Pp3c27_7820' => 'ppa', 'Pp3c2_3490' => 'ppa', 'Pp3c3_23700' => 'ppa', 'Pp3c3_36520' => 'ppa', 'Pp3c4_15250' => 'ppa', 'PRCOL_00007002' => 'pco', 'Prupe.1G030600' => 'ppe', 'Prupe.1G030700' => 'ppe', 'Prupe.6G345200' => 'ppe', 'Prupe.8G230300' => 'ppe', 'Prupe.8G230500' => 'ppe', 'Psat3g059600' => 'psa', 'Psat5g200920' => 'psa', 'Psat6g056440' => 'psa', 'Psat6g057360' => 'psa', 'Psat6g134120' => 'psa', 'Psat6g134160' => 'psa', 'Psat7g008640' => 'psa', 'Psat7g185240' => 'psa', 'PSO017G1330' => 'pso', 'PSO063G6097' => 'pso', 'PSO170G0835' => 'pso', 'PSO170G2499' => 'pso', 'PSO210G5058' => 'pso', 'PSO210G6154' => 'pso', 'PSO585G0031' => 'pso', 'PSO832G0264' => 'pso', 'PSO832G4288' => 'pso', 'QL03p027355' => 'qlo', 'QL03p027430' => 'qlo', 'QL04p081380' => 'qlo', 'QL06p015642' => 'qlo', 'QL06p015650' => 'qlo', 'QL06p015686' => 'qlo', 'QL12p042927' => 'qlo', 'QL93p1863_0035' => 'qlo', 'RcHm_v2.0_Chr3g0450581' => 'rch', 'RcHm_v2.0_Chr4g0390371' => 'rch', 'RcHm_v2.0_Chr4g0390381' => 'rch', 'RcHm_v2.0_Chr4g0390491' => 'rch', 'RcHm_v2.0_Chr4g0390501' => 'rch', 'RcHm_v2.0_Chr6g0289231' => 'rch', 'Rhsim04G0190400' => 'rsi', 'Rhsim04G0190500' => 'rsi', 'Rhsim04G0190600' => 'rsi', 'Rhsim13G0031400' => 'rsi', 'Rhsim13G0165600' => 'rsi', 'RhsimUnG0114600' => 'rsi', 'RhsimUnG0114700' => 'rsi', 'Sabra02G0034800' => 'sbr', 'Sabra02G0035100' => 'sbr', 'Sabra05G0168600' => 'sbr', 'Sabra05G0168800' => 'sbr', 'Sabra08G0123700' => 'sbr', 'Sabra10G0031900' => 'sbr', 'Sabra13G0039000' => 'sbr', 'SalBow2G0782' => 'sbo', 'SalBow2G1403' => 'sbo', 'SalBow4G0074' => 'sbo', 'SalBow4G2635' => 'sbo', 'SalBow5G3010' => 'sbo', 'Sc05g0000870' => 'sci', 'Sc05g0000890' => 'sci', 'Sc13g0005000' => 'sci', 'Sc13g0005030' => 'sci', 'Sc19g0003790' => 'sci', 'Sc19g0003800' => 'sci', 'Sed0003467' => 'sed', 'Sed0009355' => 'sed', 'Sed0009894' => 'sed', 'Sed0011972' => 'sed', 'Sed0021483' => 'sed', 'Sed0021750' => 'sed', 'Sed0026279' => 'sed', 'SEGI_05312' => 'sgi', 'SEGI_10112' => 'sgi', 'SEGI_15835' => 'sgi', 'SEGI_30386' => 'sgi', 'SEGI_34122' => 'sgi', 'SEGI_35063' => 'sgi', 'SGA_v2.0_scaffold101G29794' => 'sas', 'SGA_v2.0_scaffold1G00573' => 'sas', 'SGA_v2.0_scaffold79G25637' => 'sas', 'SGA_v2.0_scaffold88G27283' => 'sas', 'SGA_v2.0_scaffold88G27285' => 'sas', 'SGA_v2.0_scaffold88G27331' => 'sas', 'SHI09937' => 'shi', 'SMO119G0302' => 'smo', 'SMO137G0231' => 'smo', 'SMO367G1151' => 'smo', 'Solyc02g082000.3' => 'sly', 'Solyc06g031670.3' => 'sly', 'Solyc06g053810.3' => 'sly', 'Solyc07g025457.1' => 'sly', 'Solyc08g059740.1' => 'sly', 'Solyc08g059750.3' => 'sly', 'Solyc09g083370.3' => 'sly', 'Solyc12g038950.3' => 'sly', 'Sopen02g026630' => 'spe', 'Sopen06g018930' => 'spe', 'Sopen06g018940' => 'spe', 'Sopen08g009460' => 'spe', 'Sopen09g032290' => 'spe', 'Sp1g03080' => 'spa', 'Sp1g03090' => 'spa', 'Sp1g05480' => 'spa', 'Sp2g07860' => 'spa', 'Sp2g08430' => 'spa', 'Sp2g08440' => 'spa', 'Sp2g26200' => 'spa', 'Sp4g13170' => 'spa', 'Sp6g33840' => 'spa', 'SpUn1204_0010' => 'spa', 'TAR365G0908' => 'tar', 'TAR381G1270' => 'tar', 'TAR381G1651' => 'tar', 'TAR625G1131' => 'tar', 'TAR633G0962' => 'tar', 'TAR633G1729' => 'tar', 'TAR633G1864' => 'tar', 'TAR636G0221' => 'tar', 'TAR636G0314' => 'tar', 'TAR636G3202' => 'tar', 'THA.LOC104800805' => 'tha', 'THA.LOC104801096' => 'tha', 'THA.LOC104801555' => 'tha', 'THA.LOC104808491' => 'tha', 'THA.LOC104808595' => 'tha', 'THA.LOC104815985' => 'tha', 'THA.LOC104822250' => 'tha', 'THA.LOC104826071' => 'tha', 'Thecc.01G265200' => 'tca', 'Thecc.01G265300' => 'tca', 'Thecc.01G265700' => 'tca', 'Thecc.03G109100' => 'tca', 'Thecc.04G245900' => 'tca', 'Thecc.04G246000' => 'tca', 'Thhalv10003334m.g' => 'esa', 'Thhalv10005508m.g' => 'esa', 'Thhalv10005643m.g' => 'esa', 'Thhalv10007316m.g' => 'esa', 'Thhalv10009006m.g' => 'esa', 'Thhalv10009309m.g' => 'esa', 'Thhalv10014917m.g' => 'esa', 'Thhalv10014919m.g' => 'esa', 'Thhalv10015393m.g' => 'esa', 'Thhalv10016515m.g' => 'esa', 'Thhalv10029242m.g' => 'esa', 'TPR.G16654' => 'tpr', 'TPR.G20589' => 'tpr', 'TPR.G23029' => 'tpr', 'TPR.G27731' => 'tpr', 'TPR.G28889' => 'tpr', 'TPR.G28899' => 'tpr', 'TPR.G30846' => 'tpr', 'TPR.G5452' => 'tpr', 'TPR.G5713' => 'tpr', 'TPR.G9046' => 'tpr', 'TPR.G9061' => 'tpr', 'TWI09G1075' => 'twi', 'TWI12G0806' => 'twi', 'TWI18G0108' => 'twi', 'TWI53G1361' => 'twi', 'TWI73G0185' => 'twi', 'TWI73G0427' => 'twi', 'unitig_37.g12001' => 'ugi', 'unitig_747.g21660' => 'ugi', 'unitig_748.g7232' => 'ugi', 'unitig_748.g7315' => 'ugi', 'unitig_85.g27262' => 'ugi', 'unitig_92.g28220' => 'ugi', 'vmacro02632' => 'vma', 'vmacro08410' => 'vma', 'vmacro08411' => 'vma', 'vmacro15407' => 'vma', 'VMungo0251G3619' => 'vmu', 'VMungo0720G1204' => 'vmu', 'VMungo0720G1918' => 'vmu', 'VMungo0720G2387' => 'vmu', 'VMungo0720G2961' => 'vmu', 'VMungo1215G2154' => 'vmu', 'VMungo1383G2411' => 'vmu', 'Zm00001eb051130' => 'zma', 'Zm00001eb116830' => 'zma', 'Zm00001eb116850' => 'zma', 'Zm00001eb151740' => 'zma', 'Zm00001eb292360' => 'zma', 'Zm00001eb301640' => 'zma' ), 'gf_id' => 'HOM05D000856', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000856' ), 'data_identifier' => 'HOM05D000856', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000856', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p00010' => 'bna', 'A03p04160' => 'bna', 'A03p17160' => 'bna', 'A04p23370' => 'bna', 'A05p14860' => 'bna', 'A08p37020' => 'bna', 'A09p08050' => 'bna', 'A09p66800' => 'bna', 'A09p67940' => 'bna', 'A10p02680' => 'bna', 'A10p05320' => 'bna', 'Aa31LG1G20560' => 'aar', 'Aa31LG1G20610' => 'aar', 'Aa31LG1G7810' => 'aar', 'Aa31LG5G3590' => 'aar', 'Aa31LG5G6140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3819' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4683' => 'aag', 'Actinidia04480' => 'ach', 'Actinidia05466' => 'ach', 'Actinidia08445' => 'ach', 'Actinidia21170' => 'ach', 'Actinidia24812' => 'ach', 'Actinidia24951' => 'ach', 'Actinidia40088' => 'ach', 'Ah.02g111660' => 'amhyb', 'Ah.11g048900' => 'amhyb', 'Ah.11g049910' => 'amhyb', 'AL1G13870' => 'aly', 'AL1G13880' => 'aly', 'AL1G16760' => 'aly', 'AL390U10020' => 'aly', 'AL4G25520' => 'aly', 'AL6G19890' => 'aly', 'AL6G19900' => 'aly', 'AL6G19910' => 'aly', 'AL8G40100' => 'aly', 'Aqoxy2G03562' => 'aox', 'Aqoxy5G00316' => 'aox', 'Aqoxy5G00926' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1628KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1H403S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2FU6SJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.882I6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8YRY2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YN1SN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AF70II' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZA8L1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F916KL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHRD8H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KTZ8QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S22EMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8M29T' => 'arhy', 'AT1G04270' => 'ath', 'AT1G04280' => 'ath', 'AT1G06750' => 'ath', 'AT1G33850' => 'ath', 'AT2G30630' => 'ath', 'AT5G09490' => 'ath', 'AT5G09500' => 'ath', 'AT5G09510' => 'ath', 'AT5G43640' => 'ath', 'AT5G63070' => 'ath', 'ATR0605G315' => 'atr', 'Atru.chr11.175' => 'acertr', 'Atru.chr11.653' => 'acertr', 'Atru.chr3.1616' => 'acertr', 'Atru.chr4.2230' => 'acertr', 'Atru.chr4.2232' => 'acertr', 'Atru.chr5.1598' => 'acertr', 'Atru.chr5.1600' => 'acertr', 'Atru.chr5.2188' => 'acertr', 'AUR62008326' => 'cqu', 'AUR62011922' => 'cqu', 'AUR62011924' => 'cqu', 'AUR62021771' => 'cqu', 'AUR62032237' => 'cqu', 'AUR62032240' => 'cqu', 'BcaB01g05572' => 'bca', 'BcaB02g10337' => 'bca', 'BcaB04g19944' => 'bca', 'BcaB05g21548' => 'bca', 'BcaB05g21549' => 'bca', 'BcaB05g23227' => 'bca', 'BcaB06g26256' => 'bca', 'BcaB06g26257' => 'bca', 'BcaB06g28379' => 'bca', 'BcaC02g11159' => 'bca', 'BcaC03g13258' => 'bca', 'BcaC03g13259' => 'bca', 'BcaC05g24456' => 'bca', 'BcaC05g24457' => 'bca', 'BcaC07g36922' => 'bca', 'BcaC07g36923' => 'bca', 'BcaC07g42050' => 'bca', 'BcaC07g42176' => 'bca', 'BcaC07g42195' => 'bca', 'BcaC07g42196' => 'bca', 'BcaNung06674' => 'bca', 'BolC2t06351H' => 'bol', 'BolC2t06352H' => 'bol', 'BolC3t12993H' => 'bol', 'BolC4t23525H' => 'bol', 'BolC4t27475H' => 'bol', 'BolC5t29025H' => 'bol', 'BolC5t29026H' => 'bol', 'BolC8t46898H' => 'bol', 'BolC8t46899H' => 'bol', 'BolC8t52630H' => 'bol', 'BolC8t52765H' => 'bol', 'BolC9t53824H' => 'bol', 'BraA03t09760Z' => 'bra', 'BraA03t10990Z' => 'bra', 'BraA05t20413Z' => 'bra', 'BraA08t35602Z' => 'bra', 'BraA09t36458Z' => 'bra', 'BraA09t42018Z' => 'bra', 'BraA09t42129Z' => 'bra', 'BraA10t42536Z' => 'bra', 'BraA10t42537Z' => 'bra', 'C01p10690' => 'bna', 'C02p03890' => 'bna', 'C02p03900' => 'bna', 'C03p04620' => 'bna', 'C04p19870' => 'bna', 'C04p59670' => 'bna', 'C05p02460' => 'bna', 'C05p02470' => 'bna', 'C08p00980' => 'bna', 'C08p00990' => 'bna', 'C08p51030' => 'bna', 'C08p52360' => 'bna', 'C09p09120' => 'bna', 'CAN.G19.15' => 'can', 'CAN.G251.10' => 'can', 'CAN.G251.9' => 'can', 'CAN.G398.24' => 'can', 'CAN.G410.32' => 'can', 'CAN.G881.2' => 'can', 'CANSAT01G3025' => 'cansat', 'CANSAT78G1211' => 'cansat', 'CANSAT78G1218' => 'cansat', 'CANSAT78G1521' => 'cansat', 'CANSAT78G1670' => 'cansat', 'CARHR003600' => 'chi', 'CARHR003610' => 'chi', 'CARHR006290' => 'chi', 'CARHR006430' => 'chi', 'CARHR124110' => 'chi', 'CARHR203870' => 'chi', 'CARHR203880' => 'chi', 'CARHR203890' => 'chi', 'CARHR276880' => 'chi', 'Carub.0001s0346' => 'cru', 'Carub.0001s0347' => 'cru', 'Carub.0001s0607' => 'cru', 'Carub.0003s2768' => 'cru', 'Carub.0003s2769' => 'cru', 'Carub.0004s1178' => 'cru', 'Carub.0006s0806' => 'cru', 'Carub.0006s0807' => 'cru', 'Carub.0006s0808' => 'cru', 'Carub.0008s0501' => 'cru', 'Carub.0008s2379' => 'cru', 'Ca_08655_v3' => 'car', 'Ca_08922_v3' => 'car', 'Ca_08923_v3' => 'car', 'Ca_09119_v3' => 'car', 'Ca_09703_v3' => 'car', 'Ca_09705_v3' => 'car', 'Ca_09835_v3' => 'car', 'Ca_26403_v3' => 'car', 'Ca_30719_v3' => 'car', 'CBR_g17958' => 'cbr', 'CBR_g40516' => 'cbr', 'Cc00_g05350' => 'ccan', 'Cc01_g18690' => 'ccan', 'Cc03_g04830' => 'ccan', 'Cc03_g04850' => 'ccan', 'CDE02G4469' => 'cde', 'CDE06G0883' => 'cde', 'CDE06G1295' => 'cde', 'CDE06G1390' => 'cde', 'CDE07G0584' => 'cde', 'CDE07G1084' => 'cde', 'CDE08G1259' => 'cde', 'Cfa002341' => 'cfa', 'Cfa024337' => 'cfa', 'Ciclev10004749m.g' => 'ccl', 'Ciclev10006127m.g' => 'ccl', 'Ciclev10019720m.g' => 'ccl', 'Ciclev10022652m.g' => 'ccl', 'CiPaw.01G190400' => 'cil', 'CiPaw.01G190500' => 'cil', 'CiPaw.02G116400' => 'cil', 'CiPaw.02G116500' => 'cil', 'CiPaw.04G183000' => 'cil', 'CiPaw.04G183300' => 'cil', 'ClCG05G004610' => 'cla', 'ClCG05G004620' => 'cla', 'ClCG06G006730' => 'cla', 'ClCG06G006740' => 'cla', 'ClCG11G003690' => 'cla', 'COL.COLO4_08276' => 'col', 'COL.COLO4_08277' => 'col', 'COL.COLO4_15787' => 'col', 'COL.COLO4_15789' => 'col', 'Cpa.g.c44815' => 'cpa', 'Cpa.g.sc52.144' => 'cpa', 'Cpa.g.sc58.46' => 'cpa', 'Cpa.g.sc58.47' => 'cpa', 'Cre08.g360900' => 'cre', 'CsaV3_2G013030' => 'csa', 'CsaV3_2G013050' => 'csa', 'CsaV3_2G015620' => 'csa', 'CsaV3_3G012590' => 'csa', 'CsaV3_3G012600' => 'csa', 'CSS0001641' => 'camsi', 'CSS0008310' => 'camsi', 'CSS0013011' => 'camsi', 'CSS0017147' => 'camsi', 'CSS0022970' => 'camsi', 'CSS0025655' => 'camsi', 'CSS0028665' => 'camsi', 'CSS0029117' => 'camsi', 'CSS0032024' => 'camsi', 'CSS0039681' => 'camsi', 'CSS0046516' => 'camsi', 'CSS0050307' => 'camsi', 'DCAR_005871' => 'dca', 'DCAR_007342' => 'dca', 'DCAR_024228' => 'dca', 'DCAR_027277' => 'dca', 'DCAR_030718' => 'dca', 'Dinv20287' => 'din', 'Dinv22461' => 'din', 'Dinv22464' => 'din', 'Dinv29912' => 'din', 'Dinv29913' => 'din', 'Dinv34580' => 'din', 'Dinv34582' => 'din', 'Dinv44632' => 'din', 'Duzib052G0266' => 'dzi', 'Duzib133G0907' => 'dzi', 'Duzib133G1034' => 'dzi', 'Duzib138G0207' => 'dzi', 'Duzib138G0491' => 'dzi', 'Duzib151G0812' => 'dzi', 'Duzib151G1166' => 'dzi', 'Duzib168G0192' => 'dzi', 'Duzib211G0077' => 'dzi', 'Duzib212G0429' => 'dzi', 'Duzib212G0472' => 'dzi', 'ECA233G2617' => 'eca', 'ECA236G4188' => 'eca', 'ECA240G0936' => 'eca', 'ECA240G1129' => 'eca', 'ECA247G0623' => 'eca', 'EL10Ac5g10451' => 'bvu', 'EL10Ac5g10453' => 'bvu', 'EL10Ac5g10894' => 'bvu', 'Eucgr.H00192' => 'egr', 'Eucgr.H00193' => 'egr', 'Eucgr.H00194' => 'egr', 'Eucgr.J01562' => 'egr', 'Eucgr.K03301' => 'egr', 'FAN02G0632' => 'fan', 'FAN05G5378' => 'fan', 'FAN09G3247' => 'fan', 'FAN12G0435' => 'fan', 'FAN12G2426' => 'fan', 'FAN14G1707' => 'fan', 'FAN14G4725' => 'fan', 'FAN15G2071' => 'fan', 'FAN17G3065' => 'fan', 'FAN19G1376' => 'fan', 'FAN20G0354' => 'fan', 'FAN20G2429' => 'fan', 'FAN20G2658' => 'fan', 'FAN24G2343' => 'fan', 'FAN27G2362' => 'fan', 'FAN28G1765' => 'fan', 'FvH4_1g16020' => 'fve', 'FvH4_2g04890' => 'fve', 'FvH4_2g22270' => 'fve', 'FvH4_4g02630' => 'fve', 'FvH4_4g02640' => 'fve', 'FvH4_6g02650' => 'fve', 'Glyma.02G140600' => 'gma', 'Glyma.03G159900' => 'gma', 'Glyma.05G234800' => 'gma', 'Glyma.07G269600' => 'gma', 'Glyma.08G042300' => 'gma', 'Glyma.10G033500' => 'gma', 'Glyma.10G185200' => 'gma', 'Glyma.17G004300' => 'gma', 'Glyma.19G161900' => 'gma', 'Glyma.20G205100' => 'gma', 'Glyma.20G205200' => 'gma', 'Gohir.A01G139101' => 'ghi', 'Gohir.A02G035600' => 'ghi', 'Gohir.A02G117901' => 'ghi', 'Gohir.A07G210100' => 'ghi', 'Gohir.A07G210200' => 'ghi', 'Gohir.A08G061100' => 'ghi', 'Gohir.A09G223000' => 'ghi', 'Gohir.A09G223100' => 'ghi', 'Gohir.A10G113900' => 'ghi', 'Gohir.A10G114000' => 'ghi', 'Gohir.D02G042300' => 'ghi', 'Gohir.D07G216100' => 'ghi', 'Gohir.D07G216200' => 'ghi', 'Gohir.D08G070400' => 'ghi', 'Gohir.D09G225000' => 'ghi', 'Gohir.D09G225100' => 'ghi', 'Gohir.D10G152300' => 'ghi', 'Gohir.D10G153200' => 'ghi', 'Gohir.D11G133701' => 'ghi', 'Gorai.004G074100' => 'gra', 'Gorai.005G046800' => 'gra', 'Gorai.006G246500' => 'gra', 'Gorai.006G246600' => 'gra', 'Gorai.007G142900' => 'gra', 'Gorai.011G171000' => 'gra', 'Gorai.011G171100' => 'gra', 'Gorai.013G104300' => 'gra', 'Gorai.013G104400' => 'gra', 'GSVIVG01000754001' => 'vvi', 'GSVIVG01000756001' => 'vvi', 'GSVIVG01010903001' => 'vvi', 'GSVIVG01017623001' => 'vvi', 'GSVIVG01018113001' => 'vvi', 'GSVIVG01018116001' => 'vvi', 'GSVIVG01018118001' => 'vvi', 'HanXRQChr03g0076211' => 'han', 'HanXRQChr03g0092431' => 'han', 'HanXRQChr03g0092441' => 'han', 'HanXRQChr03g0092591' => 'han', 'HanXRQChr03g0092671' => 'han', 'HanXRQChr03g0092681' => 'han', 'HanXRQChr03g0092691' => 'han', 'HanXRQChr03g0092701' => 'han', 'HanXRQChr03g0092721' => 'han', 'HanXRQChr03g0092731' => 'han', 'HanXRQChr04g0113681' => 'han', 'HanXRQChr10g0281371' => 'han', 'HanXRQChr11g0337141' => 'han', 'HanXRQChr13g0424521' => 'han', 'HanXRQChr13g0424531' => 'han', 'HanXRQChr13g0424541' => 'han', 'HanXRQChr16g0498221' => 'han', 'Haze_04377' => 'cav', 'Haze_11298' => 'cav', 'Haze_24547' => 'cav', 'Haze_24550' => 'cav', 'Haze_26587' => 'cav', 'Hma1.2p1_0650F.1_g195410' => 'hma', 'Hma1.2p1_0893F.1_g233470' => 'hma', 'HPP92_006508' => 'vpl', 'HPP92_024780' => 'vpl', 'Hund02688' => 'sun', 'Hund09380' => 'sun', 'Hund09381' => 'sun', 'Hund09832' => 'sun', 'Hund09833' => 'sun', 'Hund11351' => 'sun', 'Hund11513' => 'sun', 'Lalb_Chr06g0162591' => 'lal', 'Lalb_Chr06g0162601' => 'lal', 'Lalb_Chr06g0169321' => 'lal', 'Lalb_Chr09g0330951' => 'lal', 'Lalb_Chr16g0387631' => 'lal', 'Lalb_Chr21g0306241' => 'lal', 'Lalb_Chr25g0290051' => 'lal', 'Lalb_Chr25g0290061' => 'lal', 'Lalb_Chr25g0290071' => 'lal', 'Lj1g0003876' => 'lja', 'Lj1P1207T36' => 'lonja', 'Lj2C1156G12' => 'lonja', 'Lj3A793G39' => 'lonja', 'Lj3C580G2' => 'lonja', 'Lj3C780G2' => 'lonja', 'Lj3C780T4' => 'lonja', 'Lj3C793G9' => 'lonja', 'Lj4g0012960' => 'lja', 'Lj5g0021252' => 'lja', 'Lj5g0021484' => 'lja', 'Lj5g0024528' => 'lja', 'Lj6A399T12' => 'lonja', 'Lj6A656G65' => 'lonja', 'Lsat_1_v5_gn_3_125500' => 'lsa', 'Lsat_1_v5_gn_3_125540' => 'lsa', 'Lsat_1_v5_gn_5_72701' => 'lsa', 'Lsat_1_v5_gn_8_91560' => 'lsa', 'Lsat_1_v5_gn_9_9640' => 'lsa', 'Manes.01G200600' => 'mes', 'Manes.01G200700' => 'mes', 'Manes.03G168900' => 'mes', 'Manes.03G169000' => 'mes', 'Manes.05G085801' => 'mes', 'Manes.05G086200' => 'mes', 'Manes.15G036700' => 'mes', 'Manes.15G036900' => 'mes', 'Mapoly0004s0172' => 'mpo', 'Mapoly0023s0001' => 'mpo', 'Mapoly0142s0012' => 'mpo', 'MBI01_g32854_MAGBIO' => 'mbi', 'MBI11_g24427_MAGBIO' => 'mbi', 'MBI11_g47319_MAGBIO' => 'mbi', 'MCO01G433' => 'mco', 'MD00G1187800' => 'mdo', 'MD04G1226500' => 'mdo', 'MD05G1203900' => 'mdo', 'MD10G1191100' => 'mdo', 'MD12G1243500' => 'mdo', 'MD13G1207000' => 'mdo', 'MD13G1207100' => 'mdo', 'MD16G1208600' => 'mdo', 'Medtr1g050352' => 'mtr', 'Medtr1g070385' => 'mtr', 'Medtr1g070450' => 'mtr', 'Medtr1g075200' => 'mtr', 'Medtr1g075250' => 'mtr', 'Medtr1g075260' => 'mtr', 'Medtr1g475250' => 'mtr', 'Medtr4g075450' => 'mtr', 'Medtr7g096300' => 'mtr', 'Medtr8g105110' => 'mtr', 'MELO3C006470.2' => 'cme', 'MELO3C006471.2' => 'cme', 'MELO3C020772.2' => 'cme', 'MELO3C026780.2' => 'cme', 'MELO3C026781.2' => 'cme', 'Migut.D00390' => 'egut', 'Migut.G00435' => 'egut', 'Migut.G00436' => 'egut', 'Migut.G00718' => 'egut', 'MSTRG.21891' => 'ama', 'MSTRG.26910' => 'ama', 'MSTRG.4099' => 'ama', 'MSTRG.9925' => 'ama', 'Nitab4.5_0000165g0010' => 'nta', 'Nitab4.5_0000209g0180' => 'nta', 'Nitab4.5_0000244g0440' => 'nta', 'Nitab4.5_0000525g0220' => 'nta', 'Nitab4.5_0001597g0020' => 'nta', 'Nitab4.5_0001878g0040' => 'nta', 'Nitab4.5_0001878g0060' => 'nta', 'Nitab4.5_0002838g0100' => 'nta', 'Nitab4.5_0002838g0120' => 'nta', 'Nitab4.5_0004798g0030' => 'nta', 'Nitab4.5_0005420g0010' => 'nta', 'Nitab4.5_0005507g0010' => 'nta', 'Nitab4.5_0005574g0020' => 'nta', 'Nitab4.5_0005838g0010' => 'nta', 'Nitab4.5_0010580g0020' => 'nta', 'Nn1g02599' => 'nnu', 'Nn1g02608' => 'nnu', 'Nn3g17742' => 'nnu', 'Nn3g19534' => 'nnu', 'Nn3g19535' => 'nnu', 'Oeu008790.1' => 'oeu', 'Oeu008792.1' => 'oeu', 'Oeu032590.1' => 'oeu', 'Oeu035349.1' => 'oeu', 'Oeu049791.1' => 'oeu', 'Os01g0774500' => 'osa', 'Os03g0628800' => 'osa', 'Os03g0798600' => 'osa', 'Os05g0508800' => 'osa', 'Peaxi162Scf00036g02018' => 'pax', 'Peaxi162Scf00578g00032' => 'pax', 'Peaxi162Scf00578g00317' => 'pax', 'Peaxi162Scf00785g00114' => 'pax', 'Peaxi162Scf00813g00119' => 'pax', 'Peaxi162Scf00906g00227' => 'pax', 'PGR004G0875' => 'pgr', 'PGR004G2424' => 'pgr', 'PGR031G1239' => 'pgr', 'PGR031G2474' => 'pgr', 'PGR044G0423' => 'pgr', 'PGSC0003DMG400001128' => 'stu', 'PGSC0003DMG400007336' => 'stu', 'PGSC0003DMG400016318' => 'stu', 'PGSC0003DMG400016319' => 'stu', 'PGSC0003DMG400018074' => 'stu', 'Phvul.001G157700' => 'pvu', 'Phvul.002G148550' => 'pvu', 'Phvul.002G320200' => 'pvu', 'Phvul.003G089200' => 'pvu', 'Phvul.007G126000' => 'pvu', 'Phvul.007G126100' => 'pvu', 'Phvul.007G178000' => 'pvu', 'Phvul.007G178200' => 'pvu', 'Potri.002G043000' => 'ptr', 'Potri.002G043200' => 'ptr', 'Potri.003G123750' => 'ptr', 'Potri.005G055401' => 'ptr', 'Potri.005G219700' => 'ptr', 'Potri.005G220000' => 'ptr', 'Potri.008G161901' => 'ptr', 'Potri.008G162000' => 'ptr', 'Potri.008G162400' => 'ptr', 'Potri.010G076900' => 'ptr', 'Pp3c12_9180' => 'ppa', 'Pp3c13_19770' => 'ppa', 'Pp3c14_22950' => 'ppa', 'Pp3c16_12160' => 'ppa', 'Pp3c27_7820' => 'ppa', 'Pp3c2_3490' => 'ppa', 'Pp3c3_23700' => 'ppa', 'Pp3c3_36520' => 'ppa', 'Pp3c4_15250' => 'ppa', 'PRCOL_00007002' => 'pco', 'Prupe.1G030600' => 'ppe', 'Prupe.1G030700' => 'ppe', 'Prupe.6G345200' => 'ppe', 'Prupe.8G230300' => 'ppe', 'Prupe.8G230500' => 'ppe', 'Psat3g059600' => 'psa', 'Psat5g200920' => 'psa', 'Psat6g056440' => 'psa', 'Psat6g057360' => 'psa', 'Psat6g134120' => 'psa', 'Psat6g134160' => 'psa', 'Psat7g008640' => 'psa', 'Psat7g185240' => 'psa', 'PSO017G1330' => 'pso', 'PSO063G6097' => 'pso', 'PSO170G0835' => 'pso', 'PSO170G2499' => 'pso', 'PSO210G5058' => 'pso', 'PSO210G6154' => 'pso', 'PSO585G0031' => 'pso', 'PSO832G0264' => 'pso', 'PSO832G4288' => 'pso', 'QL03p027355' => 'qlo', 'QL03p027430' => 'qlo', 'QL04p081380' => 'qlo', 'QL06p015642' => 'qlo', 'QL06p015650' => 'qlo', 'QL06p015686' => 'qlo', 'QL12p042927' => 'qlo', 'QL93p1863_0035' => 'qlo', 'RcHm_v2.0_Chr3g0450581' => 'rch', 'RcHm_v2.0_Chr4g0390371' => 'rch', 'RcHm_v2.0_Chr4g0390381' => 'rch', 'RcHm_v2.0_Chr4g0390491' => 'rch', 'RcHm_v2.0_Chr4g0390501' => 'rch', 'RcHm_v2.0_Chr6g0289231' => 'rch', 'Rhsim04G0190400' => 'rsi', 'Rhsim04G0190500' => 'rsi', 'Rhsim04G0190600' => 'rsi', 'Rhsim13G0031400' => 'rsi', 'Rhsim13G0165600' => 'rsi', 'RhsimUnG0114600' => 'rsi', 'RhsimUnG0114700' => 'rsi', 'Sabra02G0034800' => 'sbr', 'Sabra02G0035100' => 'sbr', 'Sabra05G0168600' => 'sbr', 'Sabra05G0168800' => 'sbr', 'Sabra08G0123700' => 'sbr', 'Sabra10G0031900' => 'sbr', 'Sabra13G0039000' => 'sbr', 'SalBow2G0782' => 'sbo', 'SalBow2G1403' => 'sbo', 'SalBow4G0074' => 'sbo', 'SalBow4G2635' => 'sbo', 'SalBow5G3010' => 'sbo', 'Sc05g0000870' => 'sci', 'Sc05g0000890' => 'sci', 'Sc13g0005000' => 'sci', 'Sc13g0005030' => 'sci', 'Sc19g0003790' => 'sci', 'Sc19g0003800' => 'sci', 'Sed0003467' => 'sed', 'Sed0009355' => 'sed', 'Sed0009894' => 'sed', 'Sed0011972' => 'sed', 'Sed0021483' => 'sed', 'Sed0021750' => 'sed', 'Sed0026279' => 'sed', 'SEGI_05312' => 'sgi', 'SEGI_10112' => 'sgi', 'SEGI_15835' => 'sgi', 'SEGI_30386' => 'sgi', 'SEGI_34122' => 'sgi', 'SEGI_35063' => 'sgi', 'SGA_v2.0_scaffold101G29794' => 'sas', 'SGA_v2.0_scaffold1G00573' => 'sas', 'SGA_v2.0_scaffold79G25637' => 'sas', 'SGA_v2.0_scaffold88G27283' => 'sas', 'SGA_v2.0_scaffold88G27285' => 'sas', 'SGA_v2.0_scaffold88G27331' => 'sas', 'SHI09937' => 'shi', 'SMO119G0302' => 'smo', 'SMO137G0231' => 'smo', 'SMO367G1151' => 'smo', 'Solyc02g082000.3' => 'sly', 'Solyc06g031670.3' => 'sly', 'Solyc06g053810.3' => 'sly', 'Solyc07g025457.1' => 'sly', 'Solyc08g059740.1' => 'sly', 'Solyc08g059750.3' => 'sly', 'Solyc09g083370.3' => 'sly', 'Solyc12g038950.3' => 'sly', 'Sopen02g026630' => 'spe', 'Sopen06g018930' => 'spe', 'Sopen06g018940' => 'spe', 'Sopen08g009460' => 'spe', 'Sopen09g032290' => 'spe', 'Sp1g03080' => 'spa', 'Sp1g03090' => 'spa', 'Sp1g05480' => 'spa', 'Sp2g07860' => 'spa', 'Sp2g08430' => 'spa', 'Sp2g08440' => 'spa', 'Sp2g26200' => 'spa', 'Sp4g13170' => 'spa', 'Sp6g33840' => 'spa', 'SpUn1204_0010' => 'spa', 'TAR365G0908' => 'tar', 'TAR381G1270' => 'tar', 'TAR381G1651' => 'tar', 'TAR625G1131' => 'tar', 'TAR633G0962' => 'tar', 'TAR633G1729' => 'tar', 'TAR633G1864' => 'tar', 'TAR636G0221' => 'tar', 'TAR636G0314' => 'tar', 'TAR636G3202' => 'tar', 'THA.LOC104800805' => 'tha', 'THA.LOC104801096' => 'tha', 'THA.LOC104801555' => 'tha', 'THA.LOC104808491' => 'tha', 'THA.LOC104808595' => 'tha', 'THA.LOC104815985' => 'tha', 'THA.LOC104822250' => 'tha', 'THA.LOC104826071' => 'tha', 'Thecc.01G265200' => 'tca', 'Thecc.01G265300' => 'tca', 'Thecc.01G265700' => 'tca', 'Thecc.03G109100' => 'tca', 'Thecc.04G245900' => 'tca', 'Thecc.04G246000' => 'tca', 'Thhalv10003334m.g' => 'esa', 'Thhalv10005508m.g' => 'esa', 'Thhalv10005643m.g' => 'esa', 'Thhalv10007316m.g' => 'esa', 'Thhalv10009006m.g' => 'esa', 'Thhalv10009309m.g' => 'esa', 'Thhalv10014917m.g' => 'esa', 'Thhalv10014919m.g' => 'esa', 'Thhalv10015393m.g' => 'esa', 'Thhalv10016515m.g' => 'esa', 'Thhalv10029242m.g' => 'esa', 'TPR.G16654' => 'tpr', 'TPR.G20589' => 'tpr', 'TPR.G23029' => 'tpr', 'TPR.G27731' => 'tpr', 'TPR.G28889' => 'tpr', 'TPR.G28899' => 'tpr', 'TPR.G30846' => 'tpr', 'TPR.G5452' => 'tpr', 'TPR.G5713' => 'tpr', 'TPR.G9046' => 'tpr', 'TPR.G9061' => 'tpr', 'TWI09G1075' => 'twi', 'TWI12G0806' => 'twi', 'TWI18G0108' => 'twi', 'TWI53G1361' => 'twi', 'TWI73G0185' => 'twi', 'TWI73G0427' => 'twi', 'unitig_37.g12001' => 'ugi', 'unitig_747.g21660' => 'ugi', 'unitig_748.g7232' => 'ugi', 'unitig_748.g7315' => 'ugi', 'unitig_85.g27262' => 'ugi', 'unitig_92.g28220' => 'ugi', 'vmacro02632' => 'vma', 'vmacro08410' => 'vma', 'vmacro08411' => 'vma', 'vmacro15407' => 'vma', 'VMungo0251G3619' => 'vmu', 'VMungo0720G1204' => 'vmu', 'VMungo0720G1918' => 'vmu', 'VMungo0720G2387' => 'vmu', 'VMungo0720G2961' => 'vmu', 'VMungo1215G2154' => 'vmu', 'VMungo1383G2411' => 'vmu', 'Zm00001eb051130' => 'zma', 'Zm00001eb116830' => 'zma', 'Zm00001eb116850' => 'zma', 'Zm00001eb151740' => 'zma', 'Zm00001eb292360' => 'zma', 'Zm00001eb301640' => 'zma' ) $gf_id = 'HOM05D000856' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000856' ) $data_identifier = 'HOM05D000856' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 13, 'ath' => (int) 10, 'atr' => (int) 1, 'acertr' => (int) 8, 'cqu' => (int) 6, 'bca' => (int) 21, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 11, 'car' => (int) 9, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 8, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 5, 'fan' => (int) 16, 'fve' => (int) 6, 'gma' => (int) 11, 'ghi' => (int) 19, 'gra' => (int) 9, 'vvi' => (int) 7, 'han' => (int) 17, 'cav' => (int) 5, 'hma' => (int) 2, 'vpl' => (int) 2, 'sun' => (int) 7, 'lal' => (int) 9, 'lja' => (int) 5, 'lonja' => (int) 9, 'lsa' => (int) 5, 'mes' => (int) 8, 'mpo' => (int) 3, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 10, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 15, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 9, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 9, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 6, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 5, 'spa' => (int) 10, 'tar' => (int) 10, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 11, 'tpr' => (int) 11, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 4, 'vmu' => (int) 7, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb301640' $species_info = array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ) $local_species = 'vmu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000856', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p00010' => 'bna', 'A03p04160' => 'bna', 'A03p17160' => 'bna', 'A04p23370' => 'bna', 'A05p14860' => 'bna', 'A08p37020' => 'bna', 'A09p08050' => 'bna', 'A09p66800' => 'bna', 'A09p67940' => 'bna', 'A10p02680' => 'bna', 'A10p05320' => 'bna', 'Aa31LG1G20560' => 'aar', 'Aa31LG1G20610' => 'aar', 'Aa31LG1G7810' => 'aar', 'Aa31LG5G3590' => 'aar', 'Aa31LG5G6140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3819' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4683' => 'aag', 'Actinidia04480' => 'ach', 'Actinidia05466' => 'ach', 'Actinidia08445' => 'ach', 'Actinidia21170' => 'ach', 'Actinidia24812' => 'ach', 'Actinidia24951' => 'ach', 'Actinidia40088' => 'ach', 'Ah.02g111660' => 'amhyb', 'Ah.11g048900' => 'amhyb', 'Ah.11g049910' => 'amhyb', 'AL1G13870' => 'aly', 'AL1G13880' => 'aly', 'AL1G16760' => 'aly', 'AL390U10020' => 'aly', 'AL4G25520' => 'aly', 'AL6G19890' => 'aly', 'AL6G19900' => 'aly', 'AL6G19910' => 'aly', 'AL8G40100' => 'aly', 'Aqoxy2G03562' => 'aox', 'Aqoxy5G00316' => 'aox', 'Aqoxy5G00926' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1628KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1H403S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2FU6SJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.882I6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8YRY2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YN1SN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AF70II' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZA8L1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F916KL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHRD8H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KTZ8QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S22EMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8M29T' => 'arhy', 'AT1G04270' => 'ath', 'AT1G04280' => 'ath', 'AT1G06750' => 'ath', 'AT1G33850' => 'ath', 'AT2G30630' => 'ath', 'AT5G09490' => 'ath', 'AT5G09500' => 'ath', 'AT5G09510' => 'ath', 'AT5G43640' => 'ath', 'AT5G63070' => 'ath', 'ATR0605G315' => 'atr', 'Atru.chr11.175' => 'acertr', 'Atru.chr11.653' => 'acertr', 'Atru.chr3.1616' => 'acertr', 'Atru.chr4.2230' => 'acertr', 'Atru.chr4.2232' => 'acertr', 'Atru.chr5.1598' => 'acertr', 'Atru.chr5.1600' => 'acertr', 'Atru.chr5.2188' => 'acertr', 'AUR62008326' => 'cqu', 'AUR62011922' => 'cqu', 'AUR62011924' => 'cqu', 'AUR62021771' => 'cqu', 'AUR62032237' => 'cqu', 'AUR62032240' => 'cqu', 'BcaB01g05572' => 'bca', 'BcaB02g10337' => 'bca', 'BcaB04g19944' => 'bca', 'BcaB05g21548' => 'bca', 'BcaB05g21549' => 'bca', 'BcaB05g23227' => 'bca', 'BcaB06g26256' => 'bca', 'BcaB06g26257' => 'bca', 'BcaB06g28379' => 'bca', 'BcaC02g11159' => 'bca', 'BcaC03g13258' => 'bca', 'BcaC03g13259' => 'bca', 'BcaC05g24456' => 'bca', 'BcaC05g24457' => 'bca', 'BcaC07g36922' => 'bca', 'BcaC07g36923' => 'bca', 'BcaC07g42050' => 'bca', 'BcaC07g42176' => 'bca', 'BcaC07g42195' => 'bca', 'BcaC07g42196' => 'bca', 'BcaNung06674' => 'bca', 'BolC2t06351H' => 'bol', 'BolC2t06352H' => 'bol', 'BolC3t12993H' => 'bol', 'BolC4t23525H' => 'bol', 'BolC4t27475H' => 'bol', 'BolC5t29025H' => 'bol', 'BolC5t29026H' => 'bol', 'BolC8t46898H' => 'bol', 'BolC8t46899H' => 'bol', 'BolC8t52630H' => 'bol', 'BolC8t52765H' => 'bol', 'BolC9t53824H' => 'bol', 'BraA03t09760Z' => 'bra', 'BraA03t10990Z' => 'bra', 'BraA05t20413Z' => 'bra', 'BraA08t35602Z' => 'bra', 'BraA09t36458Z' => 'bra', 'BraA09t42018Z' => 'bra', 'BraA09t42129Z' => 'bra', 'BraA10t42536Z' => 'bra', 'BraA10t42537Z' => 'bra', 'C01p10690' => 'bna', 'C02p03890' => 'bna', 'C02p03900' => 'bna', 'C03p04620' => 'bna', 'C04p19870' => 'bna', 'C04p59670' => 'bna', 'C05p02460' => 'bna', 'C05p02470' => 'bna', 'C08p00980' => 'bna', 'C08p00990' => 'bna', 'C08p51030' => 'bna', 'C08p52360' => 'bna', 'C09p09120' => 'bna', 'CAN.G19.15' => 'can', 'CAN.G251.10' => 'can', 'CAN.G251.9' => 'can', 'CAN.G398.24' => 'can', 'CAN.G410.32' => 'can', 'CAN.G881.2' => 'can', 'CANSAT01G3025' => 'cansat', 'CANSAT78G1211' => 'cansat', 'CANSAT78G1218' => 'cansat', 'CANSAT78G1521' => 'cansat', 'CANSAT78G1670' => 'cansat', 'CARHR003600' => 'chi', 'CARHR003610' => 'chi', 'CARHR006290' => 'chi', 'CARHR006430' => 'chi', 'CARHR124110' => 'chi', 'CARHR203870' => 'chi', 'CARHR203880' => 'chi', 'CARHR203890' => 'chi', 'CARHR276880' => 'chi', 'Carub.0001s0346' => 'cru', 'Carub.0001s0347' => 'cru', 'Carub.0001s0607' => 'cru', 'Carub.0003s2768' => 'cru', 'Carub.0003s2769' => 'cru', 'Carub.0004s1178' => 'cru', 'Carub.0006s0806' => 'cru', 'Carub.0006s0807' => 'cru', 'Carub.0006s0808' => 'cru', 'Carub.0008s0501' => 'cru', 'Carub.0008s2379' => 'cru', 'Ca_08655_v3' => 'car', 'Ca_08922_v3' => 'car', 'Ca_08923_v3' => 'car', 'Ca_09119_v3' => 'car', 'Ca_09703_v3' => 'car', 'Ca_09705_v3' => 'car', 'Ca_09835_v3' => 'car', 'Ca_26403_v3' => 'car', 'Ca_30719_v3' => 'car', 'CBR_g17958' => 'cbr', 'CBR_g40516' => 'cbr', 'Cc00_g05350' => 'ccan', 'Cc01_g18690' => 'ccan', 'Cc03_g04830' => 'ccan', 'Cc03_g04850' => 'ccan', 'CDE02G4469' => 'cde', 'CDE06G0883' => 'cde', 'CDE06G1295' => 'cde', 'CDE06G1390' => 'cde', 'CDE07G0584' => 'cde', 'CDE07G1084' => 'cde', 'CDE08G1259' => 'cde', 'Cfa002341' => 'cfa', 'Cfa024337' => 'cfa', 'Ciclev10004749m.g' => 'ccl', 'Ciclev10006127m.g' => 'ccl', 'Ciclev10019720m.g' => 'ccl', 'Ciclev10022652m.g' => 'ccl', 'CiPaw.01G190400' => 'cil', 'CiPaw.01G190500' => 'cil', 'CiPaw.02G116400' => 'cil', 'CiPaw.02G116500' => 'cil', 'CiPaw.04G183000' => 'cil', 'CiPaw.04G183300' => 'cil', 'ClCG05G004610' => 'cla', 'ClCG05G004620' => 'cla', 'ClCG06G006730' => 'cla', 'ClCG06G006740' => 'cla', 'ClCG11G003690' => 'cla', 'COL.COLO4_08276' => 'col', 'COL.COLO4_08277' => 'col', 'COL.COLO4_15787' => 'col', 'COL.COLO4_15789' => 'col', 'Cpa.g.c44815' => 'cpa', 'Cpa.g.sc52.144' => 'cpa', 'Cpa.g.sc58.46' => 'cpa', 'Cpa.g.sc58.47' => 'cpa', 'Cre08.g360900' => 'cre', 'CsaV3_2G013030' => 'csa', 'CsaV3_2G013050' => 'csa', 'CsaV3_2G015620' => 'csa', 'CsaV3_3G012590' => 'csa', 'CsaV3_3G012600' => 'csa', 'CSS0001641' => 'camsi', 'CSS0008310' => 'camsi', 'CSS0013011' => 'camsi', 'CSS0017147' => 'camsi', 'CSS0022970' => 'camsi', 'CSS0025655' => 'camsi', 'CSS0028665' => 'camsi', 'CSS0029117' => 'camsi', 'CSS0032024' => 'camsi', 'CSS0039681' => 'camsi', 'CSS0046516' => 'camsi', 'CSS0050307' => 'camsi', 'DCAR_005871' => 'dca', 'DCAR_007342' => 'dca', 'DCAR_024228' => 'dca', 'DCAR_027277' => 'dca', 'DCAR_030718' => 'dca', 'Dinv20287' => 'din', 'Dinv22461' => 'din', 'Dinv22464' => 'din', 'Dinv29912' => 'din', 'Dinv29913' => 'din', 'Dinv34580' => 'din', 'Dinv34582' => 'din', 'Dinv44632' => 'din', 'Duzib052G0266' => 'dzi', 'Duzib133G0907' => 'dzi', 'Duzib133G1034' => 'dzi', 'Duzib138G0207' => 'dzi', 'Duzib138G0491' => 'dzi', 'Duzib151G0812' => 'dzi', 'Duzib151G1166' => 'dzi', 'Duzib168G0192' => 'dzi', 'Duzib211G0077' => 'dzi', 'Duzib212G0429' => 'dzi', 'Duzib212G0472' => 'dzi', 'ECA233G2617' => 'eca', 'ECA236G4188' => 'eca', 'ECA240G0936' => 'eca', 'ECA240G1129' => 'eca', 'ECA247G0623' => 'eca', 'EL10Ac5g10451' => 'bvu', 'EL10Ac5g10453' => 'bvu', 'EL10Ac5g10894' => 'bvu', 'Eucgr.H00192' => 'egr', 'Eucgr.H00193' => 'egr', 'Eucgr.H00194' => 'egr', 'Eucgr.J01562' => 'egr', 'Eucgr.K03301' => 'egr', 'FAN02G0632' => 'fan', 'FAN05G5378' => 'fan', 'FAN09G3247' => 'fan', 'FAN12G0435' => 'fan', 'FAN12G2426' => 'fan', 'FAN14G1707' => 'fan', 'FAN14G4725' => 'fan', 'FAN15G2071' => 'fan', 'FAN17G3065' => 'fan', 'FAN19G1376' => 'fan', 'FAN20G0354' => 'fan', 'FAN20G2429' => 'fan', 'FAN20G2658' => 'fan', 'FAN24G2343' => 'fan', 'FAN27G2362' => 'fan', 'FAN28G1765' => 'fan', 'FvH4_1g16020' => 'fve', 'FvH4_2g04890' => 'fve', 'FvH4_2g22270' => 'fve', 'FvH4_4g02630' => 'fve', 'FvH4_4g02640' => 'fve', 'FvH4_6g02650' => 'fve', 'Glyma.02G140600' => 'gma', 'Glyma.03G159900' => 'gma', 'Glyma.05G234800' => 'gma', 'Glyma.07G269600' => 'gma', 'Glyma.08G042300' => 'gma', 'Glyma.10G033500' => 'gma', 'Glyma.10G185200' => 'gma', 'Glyma.17G004300' => 'gma', 'Glyma.19G161900' => 'gma', 'Glyma.20G205100' => 'gma', 'Glyma.20G205200' => 'gma', 'Gohir.A01G139101' => 'ghi', 'Gohir.A02G035600' => 'ghi', 'Gohir.A02G117901' => 'ghi', 'Gohir.A07G210100' => 'ghi', 'Gohir.A07G210200' => 'ghi', 'Gohir.A08G061100' => 'ghi', 'Gohir.A09G223000' => 'ghi', 'Gohir.A09G223100' => 'ghi', 'Gohir.A10G113900' => 'ghi', 'Gohir.A10G114000' => 'ghi', 'Gohir.D02G042300' => 'ghi', 'Gohir.D07G216100' => 'ghi', 'Gohir.D07G216200' => 'ghi', 'Gohir.D08G070400' => 'ghi', 'Gohir.D09G225000' => 'ghi', 'Gohir.D09G225100' => 'ghi', 'Gohir.D10G152300' => 'ghi', 'Gohir.D10G153200' => 'ghi', 'Gohir.D11G133701' => 'ghi', 'Gorai.004G074100' => 'gra', 'Gorai.005G046800' => 'gra', 'Gorai.006G246500' => 'gra', 'Gorai.006G246600' => 'gra', 'Gorai.007G142900' => 'gra', 'Gorai.011G171000' => 'gra', 'Gorai.011G171100' => 'gra', 'Gorai.013G104300' => 'gra', 'Gorai.013G104400' => 'gra', 'GSVIVG01000754001' => 'vvi', 'GSVIVG01000756001' => 'vvi', 'GSVIVG01010903001' => 'vvi', 'GSVIVG01017623001' => 'vvi', 'GSVIVG01018113001' => 'vvi', 'GSVIVG01018116001' => 'vvi', 'GSVIVG01018118001' => 'vvi', 'HanXRQChr03g0076211' => 'han', 'HanXRQChr03g0092431' => 'han', 'HanXRQChr03g0092441' => 'han', 'HanXRQChr03g0092591' => 'han', 'HanXRQChr03g0092671' => 'han', 'HanXRQChr03g0092681' => 'han', 'HanXRQChr03g0092691' => 'han', 'HanXRQChr03g0092701' => 'han', 'HanXRQChr03g0092721' => 'han', 'HanXRQChr03g0092731' => 'han', 'HanXRQChr04g0113681' => 'han', 'HanXRQChr10g0281371' => 'han', 'HanXRQChr11g0337141' => 'han', 'HanXRQChr13g0424521' => 'han', 'HanXRQChr13g0424531' => 'han', 'HanXRQChr13g0424541' => 'han', 'HanXRQChr16g0498221' => 'han', 'Haze_04377' => 'cav', 'Haze_11298' => 'cav', 'Haze_24547' => 'cav', 'Haze_24550' => 'cav', 'Haze_26587' => 'cav', 'Hma1.2p1_0650F.1_g195410' => 'hma', 'Hma1.2p1_0893F.1_g233470' => 'hma', 'HPP92_006508' => 'vpl', 'HPP92_024780' => 'vpl', 'Hund02688' => 'sun', 'Hund09380' => 'sun', 'Hund09381' => 'sun', 'Hund09832' => 'sun', 'Hund09833' => 'sun', 'Hund11351' => 'sun', 'Hund11513' => 'sun', 'Lalb_Chr06g0162591' => 'lal', 'Lalb_Chr06g0162601' => 'lal', 'Lalb_Chr06g0169321' => 'lal', 'Lalb_Chr09g0330951' => 'lal', 'Lalb_Chr16g0387631' => 'lal', 'Lalb_Chr21g0306241' => 'lal', 'Lalb_Chr25g0290051' => 'lal', 'Lalb_Chr25g0290061' => 'lal', 'Lalb_Chr25g0290071' => 'lal', 'Lj1g0003876' => 'lja', 'Lj1P1207T36' => 'lonja', 'Lj2C1156G12' => 'lonja', 'Lj3A793G39' => 'lonja', 'Lj3C580G2' => 'lonja', 'Lj3C780G2' => 'lonja', 'Lj3C780T4' => 'lonja', 'Lj3C793G9' => 'lonja', 'Lj4g0012960' => 'lja', 'Lj5g0021252' => 'lja', 'Lj5g0021484' => 'lja', 'Lj5g0024528' => 'lja', 'Lj6A399T12' => 'lonja', 'Lj6A656G65' => 'lonja', 'Lsat_1_v5_gn_3_125500' => 'lsa', 'Lsat_1_v5_gn_3_125540' => 'lsa', 'Lsat_1_v5_gn_5_72701' => 'lsa', 'Lsat_1_v5_gn_8_91560' => 'lsa', 'Lsat_1_v5_gn_9_9640' => 'lsa', 'Manes.01G200600' => 'mes', 'Manes.01G200700' => 'mes', 'Manes.03G168900' => 'mes', 'Manes.03G169000' => 'mes', 'Manes.05G085801' => 'mes', 'Manes.05G086200' => 'mes', 'Manes.15G036700' => 'mes', 'Manes.15G036900' => 'mes', 'Mapoly0004s0172' => 'mpo', 'Mapoly0023s0001' => 'mpo', 'Mapoly0142s0012' => 'mpo', 'MBI01_g32854_MAGBIO' => 'mbi', 'MBI11_g24427_MAGBIO' => 'mbi', 'MBI11_g47319_MAGBIO' => 'mbi', 'MCO01G433' => 'mco', 'MD00G1187800' => 'mdo', 'MD04G1226500' => 'mdo', 'MD05G1203900' => 'mdo', 'MD10G1191100' => 'mdo', 'MD12G1243500' => 'mdo', 'MD13G1207000' => 'mdo', 'MD13G1207100' => 'mdo', 'MD16G1208600' => 'mdo', 'Medtr1g050352' => 'mtr', 'Medtr1g070385' => 'mtr', 'Medtr1g070450' => 'mtr', 'Medtr1g075200' => 'mtr', 'Medtr1g075250' => 'mtr', 'Medtr1g075260' => 'mtr', 'Medtr1g475250' => 'mtr', 'Medtr4g075450' => 'mtr', 'Medtr7g096300' => 'mtr', 'Medtr8g105110' => 'mtr', 'MELO3C006470.2' => 'cme', 'MELO3C006471.2' => 'cme', 'MELO3C020772.2' => 'cme', 'MELO3C026780.2' => 'cme', 'MELO3C026781.2' => 'cme', 'Migut.D00390' => 'egut', 'Migut.G00435' => 'egut', 'Migut.G00436' => 'egut', 'Migut.G00718' => 'egut', 'MSTRG.21891' => 'ama', 'MSTRG.26910' => 'ama', 'MSTRG.4099' => 'ama', 'MSTRG.9925' => 'ama', 'Nitab4.5_0000165g0010' => 'nta', 'Nitab4.5_0000209g0180' => 'nta', 'Nitab4.5_0000244g0440' => 'nta', 'Nitab4.5_0000525g0220' => 'nta', 'Nitab4.5_0001597g0020' => 'nta', 'Nitab4.5_0001878g0040' => 'nta', 'Nitab4.5_0001878g0060' => 'nta', 'Nitab4.5_0002838g0100' => 'nta', 'Nitab4.5_0002838g0120' => 'nta', 'Nitab4.5_0004798g0030' => 'nta', 'Nitab4.5_0005420g0010' => 'nta', 'Nitab4.5_0005507g0010' => 'nta', 'Nitab4.5_0005574g0020' => 'nta', 'Nitab4.5_0005838g0010' => 'nta', 'Nitab4.5_0010580g0020' => 'nta', 'Nn1g02599' => 'nnu', 'Nn1g02608' => 'nnu', 'Nn3g17742' => 'nnu', 'Nn3g19534' => 'nnu', 'Nn3g19535' => 'nnu', 'Oeu008790.1' => 'oeu', 'Oeu008792.1' => 'oeu', 'Oeu032590.1' => 'oeu', 'Oeu035349.1' => 'oeu', 'Oeu049791.1' => 'oeu', 'Os01g0774500' => 'osa', 'Os03g0628800' => 'osa', 'Os03g0798600' => 'osa', 'Os05g0508800' => 'osa', 'Peaxi162Scf00036g02018' => 'pax', 'Peaxi162Scf00578g00032' => 'pax', 'Peaxi162Scf00578g00317' => 'pax', 'Peaxi162Scf00785g00114' => 'pax', 'Peaxi162Scf00813g00119' => 'pax', 'Peaxi162Scf00906g00227' => 'pax', 'PGR004G0875' => 'pgr', 'PGR004G2424' => 'pgr', 'PGR031G1239' => 'pgr', 'PGR031G2474' => 'pgr', 'PGR044G0423' => 'pgr', 'PGSC0003DMG400001128' => 'stu', 'PGSC0003DMG400007336' => 'stu', 'PGSC0003DMG400016318' => 'stu', 'PGSC0003DMG400016319' => 'stu', 'PGSC0003DMG400018074' => 'stu', 'Phvul.001G157700' => 'pvu', 'Phvul.002G148550' => 'pvu', 'Phvul.002G320200' => 'pvu', 'Phvul.003G089200' => 'pvu', 'Phvul.007G126000' => 'pvu', 'Phvul.007G126100' => 'pvu', 'Phvul.007G178000' => 'pvu', 'Phvul.007G178200' => 'pvu', 'Potri.002G043000' => 'ptr', 'Potri.002G043200' => 'ptr', 'Potri.003G123750' => 'ptr', 'Potri.005G055401' => 'ptr', 'Potri.005G219700' => 'ptr', 'Potri.005G220000' => 'ptr', 'Potri.008G161901' => 'ptr', 'Potri.008G162000' => 'ptr', 'Potri.008G162400' => 'ptr', 'Potri.010G076900' => 'ptr', 'Pp3c12_9180' => 'ppa', 'Pp3c13_19770' => 'ppa', 'Pp3c14_22950' => 'ppa', 'Pp3c16_12160' => 'ppa', 'Pp3c27_7820' => 'ppa', 'Pp3c2_3490' => 'ppa', 'Pp3c3_23700' => 'ppa', 'Pp3c3_36520' => 'ppa', 'Pp3c4_15250' => 'ppa', 'PRCOL_00007002' => 'pco', 'Prupe.1G030600' => 'ppe', 'Prupe.1G030700' => 'ppe', 'Prupe.6G345200' => 'ppe', 'Prupe.8G230300' => 'ppe', 'Prupe.8G230500' => 'ppe', 'Psat3g059600' => 'psa', 'Psat5g200920' => 'psa', 'Psat6g056440' => 'psa', 'Psat6g057360' => 'psa', 'Psat6g134120' => 'psa', 'Psat6g134160' => 'psa', 'Psat7g008640' => 'psa', 'Psat7g185240' => 'psa', 'PSO017G1330' => 'pso', 'PSO063G6097' => 'pso', 'PSO170G0835' => 'pso', 'PSO170G2499' => 'pso', 'PSO210G5058' => 'pso', 'PSO210G6154' => 'pso', 'PSO585G0031' => 'pso', 'PSO832G0264' => 'pso', 'PSO832G4288' => 'pso', 'QL03p027355' => 'qlo', 'QL03p027430' => 'qlo', 'QL04p081380' => 'qlo', 'QL06p015642' => 'qlo', 'QL06p015650' => 'qlo', 'QL06p015686' => 'qlo', 'QL12p042927' => 'qlo', 'QL93p1863_0035' => 'qlo', 'RcHm_v2.0_Chr3g0450581' => 'rch', 'RcHm_v2.0_Chr4g0390371' => 'rch', 'RcHm_v2.0_Chr4g0390381' => 'rch', 'RcHm_v2.0_Chr4g0390491' => 'rch', 'RcHm_v2.0_Chr4g0390501' => 'rch', 'RcHm_v2.0_Chr6g0289231' => 'rch', 'Rhsim04G0190400' => 'rsi', 'Rhsim04G0190500' => 'rsi', 'Rhsim04G0190600' => 'rsi', 'Rhsim13G0031400' => 'rsi', 'Rhsim13G0165600' => 'rsi', 'RhsimUnG0114600' => 'rsi', 'RhsimUnG0114700' => 'rsi', 'Sabra02G0034800' => 'sbr', 'Sabra02G0035100' => 'sbr', 'Sabra05G0168600' => 'sbr', 'Sabra05G0168800' => 'sbr', 'Sabra08G0123700' => 'sbr', 'Sabra10G0031900' => 'sbr', 'Sabra13G0039000' => 'sbr', 'SalBow2G0782' => 'sbo', 'SalBow2G1403' => 'sbo', 'SalBow4G0074' => 'sbo', 'SalBow4G2635' => 'sbo', 'SalBow5G3010' => 'sbo', 'Sc05g0000870' => 'sci', 'Sc05g0000890' => 'sci', 'Sc13g0005000' => 'sci', 'Sc13g0005030' => 'sci', 'Sc19g0003790' => 'sci', 'Sc19g0003800' => 'sci', 'Sed0003467' => 'sed', 'Sed0009355' => 'sed', 'Sed0009894' => 'sed', 'Sed0011972' => 'sed', 'Sed0021483' => 'sed', 'Sed0021750' => 'sed', 'Sed0026279' => 'sed', 'SEGI_05312' => 'sgi', 'SEGI_10112' => 'sgi', 'SEGI_15835' => 'sgi', 'SEGI_30386' => 'sgi', 'SEGI_34122' => 'sgi', 'SEGI_35063' => 'sgi', 'SGA_v2.0_scaffold101G29794' => 'sas', 'SGA_v2.0_scaffold1G00573' => 'sas', 'SGA_v2.0_scaffold79G25637' => 'sas', 'SGA_v2.0_scaffold88G27283' => 'sas', 'SGA_v2.0_scaffold88G27285' => 'sas', 'SGA_v2.0_scaffold88G27331' => 'sas', 'SHI09937' => 'shi', 'SMO119G0302' => 'smo', 'SMO137G0231' => 'smo', 'SMO367G1151' => 'smo', 'Solyc02g082000.3' => 'sly', 'Solyc06g031670.3' => 'sly', 'Solyc06g053810.3' => 'sly', 'Solyc07g025457.1' => 'sly', 'Solyc08g059740.1' => 'sly', 'Solyc08g059750.3' => 'sly', 'Solyc09g083370.3' => 'sly', 'Solyc12g038950.3' => 'sly', 'Sopen02g026630' => 'spe', 'Sopen06g018930' => 'spe', 'Sopen06g018940' => 'spe', 'Sopen08g009460' => 'spe', 'Sopen09g032290' => 'spe', 'Sp1g03080' => 'spa', 'Sp1g03090' => 'spa', 'Sp1g05480' => 'spa', 'Sp2g07860' => 'spa', 'Sp2g08430' => 'spa', 'Sp2g08440' => 'spa', 'Sp2g26200' => 'spa', 'Sp4g13170' => 'spa', 'Sp6g33840' => 'spa', 'SpUn1204_0010' => 'spa', 'TAR365G0908' => 'tar', 'TAR381G1270' => 'tar', 'TAR381G1651' => 'tar', 'TAR625G1131' => 'tar', 'TAR633G0962' => 'tar', 'TAR633G1729' => 'tar', 'TAR633G1864' => 'tar', 'TAR636G0221' => 'tar', 'TAR636G0314' => 'tar', 'TAR636G3202' => 'tar', 'THA.LOC104800805' => 'tha', 'THA.LOC104801096' => 'tha', 'THA.LOC104801555' => 'tha', 'THA.LOC104808491' => 'tha', 'THA.LOC104808595' => 'tha', 'THA.LOC104815985' => 'tha', 'THA.LOC104822250' => 'tha', 'THA.LOC104826071' => 'tha', 'Thecc.01G265200' => 'tca', 'Thecc.01G265300' => 'tca', 'Thecc.01G265700' => 'tca', 'Thecc.03G109100' => 'tca', 'Thecc.04G245900' => 'tca', 'Thecc.04G246000' => 'tca', 'Thhalv10003334m.g' => 'esa', 'Thhalv10005508m.g' => 'esa', 'Thhalv10005643m.g' => 'esa', 'Thhalv10007316m.g' => 'esa', 'Thhalv10009006m.g' => 'esa', 'Thhalv10009309m.g' => 'esa', 'Thhalv10014917m.g' => 'esa', 'Thhalv10014919m.g' => 'esa', 'Thhalv10015393m.g' => 'esa', 'Thhalv10016515m.g' => 'esa', 'Thhalv10029242m.g' => 'esa', 'TPR.G16654' => 'tpr', 'TPR.G20589' => 'tpr', 'TPR.G23029' => 'tpr', 'TPR.G27731' => 'tpr', 'TPR.G28889' => 'tpr', 'TPR.G28899' => 'tpr', 'TPR.G30846' => 'tpr', 'TPR.G5452' => 'tpr', 'TPR.G5713' => 'tpr', 'TPR.G9046' => 'tpr', 'TPR.G9061' => 'tpr', 'TWI09G1075' => 'twi', 'TWI12G0806' => 'twi', 'TWI18G0108' => 'twi', 'TWI53G1361' => 'twi', 'TWI73G0185' => 'twi', 'TWI73G0427' => 'twi', 'unitig_37.g12001' => 'ugi', 'unitig_747.g21660' => 'ugi', 'unitig_748.g7232' => 'ugi', 'unitig_748.g7315' => 'ugi', 'unitig_85.g27262' => 'ugi', 'unitig_92.g28220' => 'ugi', 'vmacro02632' => 'vma', 'vmacro08410' => 'vma', 'vmacro08411' => 'vma', 'vmacro15407' => 'vma', 'VMungo0251G3619' => 'vmu', 'VMungo0720G1204' => 'vmu', 'VMungo0720G1918' => 'vmu', 'VMungo0720G2387' => 'vmu', 'VMungo0720G2961' => 'vmu', 'VMungo1215G2154' => 'vmu', 'VMungo1383G2411' => 'vmu', 'Zm00001eb051130' => 'zma', 'Zm00001eb116830' => 'zma', 'Zm00001eb116850' => 'zma', 'Zm00001eb151740' => 'zma', 'Zm00001eb292360' => 'zma', 'Zm00001eb301640' => 'zma' ), 'gf_id' => 'HOM05D000856', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000856' ), 'data_identifier' => 'HOM05D000856', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000856', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p00010' => 'bna', 'A03p04160' => 'bna', 'A03p17160' => 'bna', 'A04p23370' => 'bna', 'A05p14860' => 'bna', 'A08p37020' => 'bna', 'A09p08050' => 'bna', 'A09p66800' => 'bna', 'A09p67940' => 'bna', 'A10p02680' => 'bna', 'A10p05320' => 'bna', 'Aa31LG1G20560' => 'aar', 'Aa31LG1G20610' => 'aar', 'Aa31LG1G7810' => 'aar', 'Aa31LG5G3590' => 'aar', 'Aa31LG5G6140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3819' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4683' => 'aag', 'Actinidia04480' => 'ach', 'Actinidia05466' => 'ach', 'Actinidia08445' => 'ach', 'Actinidia21170' => 'ach', 'Actinidia24812' => 'ach', 'Actinidia24951' => 'ach', 'Actinidia40088' => 'ach', 'Ah.02g111660' => 'amhyb', 'Ah.11g048900' => 'amhyb', 'Ah.11g049910' => 'amhyb', 'AL1G13870' => 'aly', 'AL1G13880' => 'aly', 'AL1G16760' => 'aly', 'AL390U10020' => 'aly', 'AL4G25520' => 'aly', 'AL6G19890' => 'aly', 'AL6G19900' => 'aly', 'AL6G19910' => 'aly', 'AL8G40100' => 'aly', 'Aqoxy2G03562' => 'aox', 'Aqoxy5G00316' => 'aox', 'Aqoxy5G00926' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1628KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1H403S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2FU6SJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.882I6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8YRY2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YN1SN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AF70II' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZA8L1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F916KL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHRD8H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KTZ8QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S22EMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8M29T' => 'arhy', 'AT1G04270' => 'ath', 'AT1G04280' => 'ath', 'AT1G06750' => 'ath', 'AT1G33850' => 'ath', 'AT2G30630' => 'ath', 'AT5G09490' => 'ath', 'AT5G09500' => 'ath', 'AT5G09510' => 'ath', 'AT5G43640' => 'ath', 'AT5G63070' => 'ath', 'ATR0605G315' => 'atr', 'Atru.chr11.175' => 'acertr', 'Atru.chr11.653' => 'acertr', 'Atru.chr3.1616' => 'acertr', 'Atru.chr4.2230' => 'acertr', 'Atru.chr4.2232' => 'acertr', 'Atru.chr5.1598' => 'acertr', 'Atru.chr5.1600' => 'acertr', 'Atru.chr5.2188' => 'acertr', 'AUR62008326' => 'cqu', 'AUR62011922' => 'cqu', 'AUR62011924' => 'cqu', 'AUR62021771' => 'cqu', 'AUR62032237' => 'cqu', 'AUR62032240' => 'cqu', 'BcaB01g05572' => 'bca', 'BcaB02g10337' => 'bca', 'BcaB04g19944' => 'bca', 'BcaB05g21548' => 'bca', 'BcaB05g21549' => 'bca', 'BcaB05g23227' => 'bca', 'BcaB06g26256' => 'bca', 'BcaB06g26257' => 'bca', 'BcaB06g28379' => 'bca', 'BcaC02g11159' => 'bca', 'BcaC03g13258' => 'bca', 'BcaC03g13259' => 'bca', 'BcaC05g24456' => 'bca', 'BcaC05g24457' => 'bca', 'BcaC07g36922' => 'bca', 'BcaC07g36923' => 'bca', 'BcaC07g42050' => 'bca', 'BcaC07g42176' => 'bca', 'BcaC07g42195' => 'bca', 'BcaC07g42196' => 'bca', 'BcaNung06674' => 'bca', 'BolC2t06351H' => 'bol', 'BolC2t06352H' => 'bol', 'BolC3t12993H' => 'bol', 'BolC4t23525H' => 'bol', 'BolC4t27475H' => 'bol', 'BolC5t29025H' => 'bol', 'BolC5t29026H' => 'bol', 'BolC8t46898H' => 'bol', 'BolC8t46899H' => 'bol', 'BolC8t52630H' => 'bol', 'BolC8t52765H' => 'bol', 'BolC9t53824H' => 'bol', 'BraA03t09760Z' => 'bra', 'BraA03t10990Z' => 'bra', 'BraA05t20413Z' => 'bra', 'BraA08t35602Z' => 'bra', 'BraA09t36458Z' => 'bra', 'BraA09t42018Z' => 'bra', 'BraA09t42129Z' => 'bra', 'BraA10t42536Z' => 'bra', 'BraA10t42537Z' => 'bra', 'C01p10690' => 'bna', 'C02p03890' => 'bna', 'C02p03900' => 'bna', 'C03p04620' => 'bna', 'C04p19870' => 'bna', 'C04p59670' => 'bna', 'C05p02460' => 'bna', 'C05p02470' => 'bna', 'C08p00980' => 'bna', 'C08p00990' => 'bna', 'C08p51030' => 'bna', 'C08p52360' => 'bna', 'C09p09120' => 'bna', 'CAN.G19.15' => 'can', 'CAN.G251.10' => 'can', 'CAN.G251.9' => 'can', 'CAN.G398.24' => 'can', 'CAN.G410.32' => 'can', 'CAN.G881.2' => 'can', 'CANSAT01G3025' => 'cansat', 'CANSAT78G1211' => 'cansat', 'CANSAT78G1218' => 'cansat', 'CANSAT78G1521' => 'cansat', 'CANSAT78G1670' => 'cansat', 'CARHR003600' => 'chi', 'CARHR003610' => 'chi', 'CARHR006290' => 'chi', 'CARHR006430' => 'chi', 'CARHR124110' => 'chi', 'CARHR203870' => 'chi', 'CARHR203880' => 'chi', 'CARHR203890' => 'chi', 'CARHR276880' => 'chi', 'Carub.0001s0346' => 'cru', 'Carub.0001s0347' => 'cru', 'Carub.0001s0607' => 'cru', 'Carub.0003s2768' => 'cru', 'Carub.0003s2769' => 'cru', 'Carub.0004s1178' => 'cru', 'Carub.0006s0806' => 'cru', 'Carub.0006s0807' => 'cru', 'Carub.0006s0808' => 'cru', 'Carub.0008s0501' => 'cru', 'Carub.0008s2379' => 'cru', 'Ca_08655_v3' => 'car', 'Ca_08922_v3' => 'car', 'Ca_08923_v3' => 'car', 'Ca_09119_v3' => 'car', 'Ca_09703_v3' => 'car', 'Ca_09705_v3' => 'car', 'Ca_09835_v3' => 'car', 'Ca_26403_v3' => 'car', 'Ca_30719_v3' => 'car', 'CBR_g17958' => 'cbr', 'CBR_g40516' => 'cbr', 'Cc00_g05350' => 'ccan', 'Cc01_g18690' => 'ccan', 'Cc03_g04830' => 'ccan', 'Cc03_g04850' => 'ccan', 'CDE02G4469' => 'cde', 'CDE06G0883' => 'cde', 'CDE06G1295' => 'cde', 'CDE06G1390' => 'cde', 'CDE07G0584' => 'cde', 'CDE07G1084' => 'cde', 'CDE08G1259' => 'cde', 'Cfa002341' => 'cfa', 'Cfa024337' => 'cfa', 'Ciclev10004749m.g' => 'ccl', 'Ciclev10006127m.g' => 'ccl', 'Ciclev10019720m.g' => 'ccl', 'Ciclev10022652m.g' => 'ccl', 'CiPaw.01G190400' => 'cil', 'CiPaw.01G190500' => 'cil', 'CiPaw.02G116400' => 'cil', 'CiPaw.02G116500' => 'cil', 'CiPaw.04G183000' => 'cil', 'CiPaw.04G183300' => 'cil', 'ClCG05G004610' => 'cla', 'ClCG05G004620' => 'cla', 'ClCG06G006730' => 'cla', 'ClCG06G006740' => 'cla', 'ClCG11G003690' => 'cla', 'COL.COLO4_08276' => 'col', 'COL.COLO4_08277' => 'col', 'COL.COLO4_15787' => 'col', 'COL.COLO4_15789' => 'col', 'Cpa.g.c44815' => 'cpa', 'Cpa.g.sc52.144' => 'cpa', 'Cpa.g.sc58.46' => 'cpa', 'Cpa.g.sc58.47' => 'cpa', 'Cre08.g360900' => 'cre', 'CsaV3_2G013030' => 'csa', 'CsaV3_2G013050' => 'csa', 'CsaV3_2G015620' => 'csa', 'CsaV3_3G012590' => 'csa', 'CsaV3_3G012600' => 'csa', 'CSS0001641' => 'camsi', 'CSS0008310' => 'camsi', 'CSS0013011' => 'camsi', 'CSS0017147' => 'camsi', 'CSS0022970' => 'camsi', 'CSS0025655' => 'camsi', 'CSS0028665' => 'camsi', 'CSS0029117' => 'camsi', 'CSS0032024' => 'camsi', 'CSS0039681' => 'camsi', 'CSS0046516' => 'camsi', 'CSS0050307' => 'camsi', 'DCAR_005871' => 'dca', 'DCAR_007342' => 'dca', 'DCAR_024228' => 'dca', 'DCAR_027277' => 'dca', 'DCAR_030718' => 'dca', 'Dinv20287' => 'din', 'Dinv22461' => 'din', 'Dinv22464' => 'din', 'Dinv29912' => 'din', 'Dinv29913' => 'din', 'Dinv34580' => 'din', 'Dinv34582' => 'din', 'Dinv44632' => 'din', 'Duzib052G0266' => 'dzi', 'Duzib133G0907' => 'dzi', 'Duzib133G1034' => 'dzi', 'Duzib138G0207' => 'dzi', 'Duzib138G0491' => 'dzi', 'Duzib151G0812' => 'dzi', 'Duzib151G1166' => 'dzi', 'Duzib168G0192' => 'dzi', 'Duzib211G0077' => 'dzi', 'Duzib212G0429' => 'dzi', 'Duzib212G0472' => 'dzi', 'ECA233G2617' => 'eca', 'ECA236G4188' => 'eca', 'ECA240G0936' => 'eca', 'ECA240G1129' => 'eca', 'ECA247G0623' => 'eca', 'EL10Ac5g10451' => 'bvu', 'EL10Ac5g10453' => 'bvu', 'EL10Ac5g10894' => 'bvu', 'Eucgr.H00192' => 'egr', 'Eucgr.H00193' => 'egr', 'Eucgr.H00194' => 'egr', 'Eucgr.J01562' => 'egr', 'Eucgr.K03301' => 'egr', 'FAN02G0632' => 'fan', 'FAN05G5378' => 'fan', 'FAN09G3247' => 'fan', 'FAN12G0435' => 'fan', 'FAN12G2426' => 'fan', 'FAN14G1707' => 'fan', 'FAN14G4725' => 'fan', 'FAN15G2071' => 'fan', 'FAN17G3065' => 'fan', 'FAN19G1376' => 'fan', 'FAN20G0354' => 'fan', 'FAN20G2429' => 'fan', 'FAN20G2658' => 'fan', 'FAN24G2343' => 'fan', 'FAN27G2362' => 'fan', 'FAN28G1765' => 'fan', 'FvH4_1g16020' => 'fve', 'FvH4_2g04890' => 'fve', 'FvH4_2g22270' => 'fve', 'FvH4_4g02630' => 'fve', 'FvH4_4g02640' => 'fve', 'FvH4_6g02650' => 'fve', 'Glyma.02G140600' => 'gma', 'Glyma.03G159900' => 'gma', 'Glyma.05G234800' => 'gma', 'Glyma.07G269600' => 'gma', 'Glyma.08G042300' => 'gma', 'Glyma.10G033500' => 'gma', 'Glyma.10G185200' => 'gma', 'Glyma.17G004300' => 'gma', 'Glyma.19G161900' => 'gma', 'Glyma.20G205100' => 'gma', 'Glyma.20G205200' => 'gma', 'Gohir.A01G139101' => 'ghi', 'Gohir.A02G035600' => 'ghi', 'Gohir.A02G117901' => 'ghi', 'Gohir.A07G210100' => 'ghi', 'Gohir.A07G210200' => 'ghi', 'Gohir.A08G061100' => 'ghi', 'Gohir.A09G223000' => 'ghi', 'Gohir.A09G223100' => 'ghi', 'Gohir.A10G113900' => 'ghi', 'Gohir.A10G114000' => 'ghi', 'Gohir.D02G042300' => 'ghi', 'Gohir.D07G216100' => 'ghi', 'Gohir.D07G216200' => 'ghi', 'Gohir.D08G070400' => 'ghi', 'Gohir.D09G225000' => 'ghi', 'Gohir.D09G225100' => 'ghi', 'Gohir.D10G152300' => 'ghi', 'Gohir.D10G153200' => 'ghi', 'Gohir.D11G133701' => 'ghi', 'Gorai.004G074100' => 'gra', 'Gorai.005G046800' => 'gra', 'Gorai.006G246500' => 'gra', 'Gorai.006G246600' => 'gra', 'Gorai.007G142900' => 'gra', 'Gorai.011G171000' => 'gra', 'Gorai.011G171100' => 'gra', 'Gorai.013G104300' => 'gra', 'Gorai.013G104400' => 'gra', 'GSVIVG01000754001' => 'vvi', 'GSVIVG01000756001' => 'vvi', 'GSVIVG01010903001' => 'vvi', 'GSVIVG01017623001' => 'vvi', 'GSVIVG01018113001' => 'vvi', 'GSVIVG01018116001' => 'vvi', 'GSVIVG01018118001' => 'vvi', 'HanXRQChr03g0076211' => 'han', 'HanXRQChr03g0092431' => 'han', 'HanXRQChr03g0092441' => 'han', 'HanXRQChr03g0092591' => 'han', 'HanXRQChr03g0092671' => 'han', 'HanXRQChr03g0092681' => 'han', 'HanXRQChr03g0092691' => 'han', 'HanXRQChr03g0092701' => 'han', 'HanXRQChr03g0092721' => 'han', 'HanXRQChr03g0092731' => 'han', 'HanXRQChr04g0113681' => 'han', 'HanXRQChr10g0281371' => 'han', 'HanXRQChr11g0337141' => 'han', 'HanXRQChr13g0424521' => 'han', 'HanXRQChr13g0424531' => 'han', 'HanXRQChr13g0424541' => 'han', 'HanXRQChr16g0498221' => 'han', 'Haze_04377' => 'cav', 'Haze_11298' => 'cav', 'Haze_24547' => 'cav', 'Haze_24550' => 'cav', 'Haze_26587' => 'cav', 'Hma1.2p1_0650F.1_g195410' => 'hma', 'Hma1.2p1_0893F.1_g233470' => 'hma', 'HPP92_006508' => 'vpl', 'HPP92_024780' => 'vpl', 'Hund02688' => 'sun', 'Hund09380' => 'sun', 'Hund09381' => 'sun', 'Hund09832' => 'sun', 'Hund09833' => 'sun', 'Hund11351' => 'sun', 'Hund11513' => 'sun', 'Lalb_Chr06g0162591' => 'lal', 'Lalb_Chr06g0162601' => 'lal', 'Lalb_Chr06g0169321' => 'lal', 'Lalb_Chr09g0330951' => 'lal', 'Lalb_Chr16g0387631' => 'lal', 'Lalb_Chr21g0306241' => 'lal', 'Lalb_Chr25g0290051' => 'lal', 'Lalb_Chr25g0290061' => 'lal', 'Lalb_Chr25g0290071' => 'lal', 'Lj1g0003876' => 'lja', 'Lj1P1207T36' => 'lonja', 'Lj2C1156G12' => 'lonja', 'Lj3A793G39' => 'lonja', 'Lj3C580G2' => 'lonja', 'Lj3C780G2' => 'lonja', 'Lj3C780T4' => 'lonja', 'Lj3C793G9' => 'lonja', 'Lj4g0012960' => 'lja', 'Lj5g0021252' => 'lja', 'Lj5g0021484' => 'lja', 'Lj5g0024528' => 'lja', 'Lj6A399T12' => 'lonja', 'Lj6A656G65' => 'lonja', 'Lsat_1_v5_gn_3_125500' => 'lsa', 'Lsat_1_v5_gn_3_125540' => 'lsa', 'Lsat_1_v5_gn_5_72701' => 'lsa', 'Lsat_1_v5_gn_8_91560' => 'lsa', 'Lsat_1_v5_gn_9_9640' => 'lsa', 'Manes.01G200600' => 'mes', 'Manes.01G200700' => 'mes', 'Manes.03G168900' => 'mes', 'Manes.03G169000' => 'mes', 'Manes.05G085801' => 'mes', 'Manes.05G086200' => 'mes', 'Manes.15G036700' => 'mes', 'Manes.15G036900' => 'mes', 'Mapoly0004s0172' => 'mpo', 'Mapoly0023s0001' => 'mpo', 'Mapoly0142s0012' => 'mpo', 'MBI01_g32854_MAGBIO' => 'mbi', 'MBI11_g24427_MAGBIO' => 'mbi', 'MBI11_g47319_MAGBIO' => 'mbi', 'MCO01G433' => 'mco', 'MD00G1187800' => 'mdo', 'MD04G1226500' => 'mdo', 'MD05G1203900' => 'mdo', 'MD10G1191100' => 'mdo', 'MD12G1243500' => 'mdo', 'MD13G1207000' => 'mdo', 'MD13G1207100' => 'mdo', 'MD16G1208600' => 'mdo', 'Medtr1g050352' => 'mtr', 'Medtr1g070385' => 'mtr', 'Medtr1g070450' => 'mtr', 'Medtr1g075200' => 'mtr', 'Medtr1g075250' => 'mtr', 'Medtr1g075260' => 'mtr', 'Medtr1g475250' => 'mtr', 'Medtr4g075450' => 'mtr', 'Medtr7g096300' => 'mtr', 'Medtr8g105110' => 'mtr', 'MELO3C006470.2' => 'cme', 'MELO3C006471.2' => 'cme', 'MELO3C020772.2' => 'cme', 'MELO3C026780.2' => 'cme', 'MELO3C026781.2' => 'cme', 'Migut.D00390' => 'egut', 'Migut.G00435' => 'egut', 'Migut.G00436' => 'egut', 'Migut.G00718' => 'egut', 'MSTRG.21891' => 'ama', 'MSTRG.26910' => 'ama', 'MSTRG.4099' => 'ama', 'MSTRG.9925' => 'ama', 'Nitab4.5_0000165g0010' => 'nta', 'Nitab4.5_0000209g0180' => 'nta', 'Nitab4.5_0000244g0440' => 'nta', 'Nitab4.5_0000525g0220' => 'nta', 'Nitab4.5_0001597g0020' => 'nta', 'Nitab4.5_0001878g0040' => 'nta', 'Nitab4.5_0001878g0060' => 'nta', 'Nitab4.5_0002838g0100' => 'nta', 'Nitab4.5_0002838g0120' => 'nta', 'Nitab4.5_0004798g0030' => 'nta', 'Nitab4.5_0005420g0010' => 'nta', 'Nitab4.5_0005507g0010' => 'nta', 'Nitab4.5_0005574g0020' => 'nta', 'Nitab4.5_0005838g0010' => 'nta', 'Nitab4.5_0010580g0020' => 'nta', 'Nn1g02599' => 'nnu', 'Nn1g02608' => 'nnu', 'Nn3g17742' => 'nnu', 'Nn3g19534' => 'nnu', 'Nn3g19535' => 'nnu', 'Oeu008790.1' => 'oeu', 'Oeu008792.1' => 'oeu', 'Oeu032590.1' => 'oeu', 'Oeu035349.1' => 'oeu', 'Oeu049791.1' => 'oeu', 'Os01g0774500' => 'osa', 'Os03g0628800' => 'osa', 'Os03g0798600' => 'osa', 'Os05g0508800' => 'osa', 'Peaxi162Scf00036g02018' => 'pax', 'Peaxi162Scf00578g00032' => 'pax', 'Peaxi162Scf00578g00317' => 'pax', 'Peaxi162Scf00785g00114' => 'pax', 'Peaxi162Scf00813g00119' => 'pax', 'Peaxi162Scf00906g00227' => 'pax', 'PGR004G0875' => 'pgr', 'PGR004G2424' => 'pgr', 'PGR031G1239' => 'pgr', 'PGR031G2474' => 'pgr', 'PGR044G0423' => 'pgr', 'PGSC0003DMG400001128' => 'stu', 'PGSC0003DMG400007336' => 'stu', 'PGSC0003DMG400016318' => 'stu', 'PGSC0003DMG400016319' => 'stu', 'PGSC0003DMG400018074' => 'stu', 'Phvul.001G157700' => 'pvu', 'Phvul.002G148550' => 'pvu', 'Phvul.002G320200' => 'pvu', 'Phvul.003G089200' => 'pvu', 'Phvul.007G126000' => 'pvu', 'Phvul.007G126100' => 'pvu', 'Phvul.007G178000' => 'pvu', 'Phvul.007G178200' => 'pvu', 'Potri.002G043000' => 'ptr', 'Potri.002G043200' => 'ptr', 'Potri.003G123750' => 'ptr', 'Potri.005G055401' => 'ptr', 'Potri.005G219700' => 'ptr', 'Potri.005G220000' => 'ptr', 'Potri.008G161901' => 'ptr', 'Potri.008G162000' => 'ptr', 'Potri.008G162400' => 'ptr', 'Potri.010G076900' => 'ptr', 'Pp3c12_9180' => 'ppa', 'Pp3c13_19770' => 'ppa', 'Pp3c14_22950' => 'ppa', 'Pp3c16_12160' => 'ppa', 'Pp3c27_7820' => 'ppa', 'Pp3c2_3490' => 'ppa', 'Pp3c3_23700' => 'ppa', 'Pp3c3_36520' => 'ppa', 'Pp3c4_15250' => 'ppa', 'PRCOL_00007002' => 'pco', 'Prupe.1G030600' => 'ppe', 'Prupe.1G030700' => 'ppe', 'Prupe.6G345200' => 'ppe', 'Prupe.8G230300' => 'ppe', 'Prupe.8G230500' => 'ppe', 'Psat3g059600' => 'psa', 'Psat5g200920' => 'psa', 'Psat6g056440' => 'psa', 'Psat6g057360' => 'psa', 'Psat6g134120' => 'psa', 'Psat6g134160' => 'psa', 'Psat7g008640' => 'psa', 'Psat7g185240' => 'psa', 'PSO017G1330' => 'pso', 'PSO063G6097' => 'pso', 'PSO170G0835' => 'pso', 'PSO170G2499' => 'pso', 'PSO210G5058' => 'pso', 'PSO210G6154' => 'pso', 'PSO585G0031' => 'pso', 'PSO832G0264' => 'pso', 'PSO832G4288' => 'pso', 'QL03p027355' => 'qlo', 'QL03p027430' => 'qlo', 'QL04p081380' => 'qlo', 'QL06p015642' => 'qlo', 'QL06p015650' => 'qlo', 'QL06p015686' => 'qlo', 'QL12p042927' => 'qlo', 'QL93p1863_0035' => 'qlo', 'RcHm_v2.0_Chr3g0450581' => 'rch', 'RcHm_v2.0_Chr4g0390371' => 'rch', 'RcHm_v2.0_Chr4g0390381' => 'rch', 'RcHm_v2.0_Chr4g0390491' => 'rch', 'RcHm_v2.0_Chr4g0390501' => 'rch', 'RcHm_v2.0_Chr6g0289231' => 'rch', 'Rhsim04G0190400' => 'rsi', 'Rhsim04G0190500' => 'rsi', 'Rhsim04G0190600' => 'rsi', 'Rhsim13G0031400' => 'rsi', 'Rhsim13G0165600' => 'rsi', 'RhsimUnG0114600' => 'rsi', 'RhsimUnG0114700' => 'rsi', 'Sabra02G0034800' => 'sbr', 'Sabra02G0035100' => 'sbr', 'Sabra05G0168600' => 'sbr', 'Sabra05G0168800' => 'sbr', 'Sabra08G0123700' => 'sbr', 'Sabra10G0031900' => 'sbr', 'Sabra13G0039000' => 'sbr', 'SalBow2G0782' => 'sbo', 'SalBow2G1403' => 'sbo', 'SalBow4G0074' => 'sbo', 'SalBow4G2635' => 'sbo', 'SalBow5G3010' => 'sbo', 'Sc05g0000870' => 'sci', 'Sc05g0000890' => 'sci', 'Sc13g0005000' => 'sci', 'Sc13g0005030' => 'sci', 'Sc19g0003790' => 'sci', 'Sc19g0003800' => 'sci', 'Sed0003467' => 'sed', 'Sed0009355' => 'sed', 'Sed0009894' => 'sed', 'Sed0011972' => 'sed', 'Sed0021483' => 'sed', 'Sed0021750' => 'sed', 'Sed0026279' => 'sed', 'SEGI_05312' => 'sgi', 'SEGI_10112' => 'sgi', 'SEGI_15835' => 'sgi', 'SEGI_30386' => 'sgi', 'SEGI_34122' => 'sgi', 'SEGI_35063' => 'sgi', 'SGA_v2.0_scaffold101G29794' => 'sas', 'SGA_v2.0_scaffold1G00573' => 'sas', 'SGA_v2.0_scaffold79G25637' => 'sas', 'SGA_v2.0_scaffold88G27283' => 'sas', 'SGA_v2.0_scaffold88G27285' => 'sas', 'SGA_v2.0_scaffold88G27331' => 'sas', 'SHI09937' => 'shi', 'SMO119G0302' => 'smo', 'SMO137G0231' => 'smo', 'SMO367G1151' => 'smo', 'Solyc02g082000.3' => 'sly', 'Solyc06g031670.3' => 'sly', 'Solyc06g053810.3' => 'sly', 'Solyc07g025457.1' => 'sly', 'Solyc08g059740.1' => 'sly', 'Solyc08g059750.3' => 'sly', 'Solyc09g083370.3' => 'sly', 'Solyc12g038950.3' => 'sly', 'Sopen02g026630' => 'spe', 'Sopen06g018930' => 'spe', 'Sopen06g018940' => 'spe', 'Sopen08g009460' => 'spe', 'Sopen09g032290' => 'spe', 'Sp1g03080' => 'spa', 'Sp1g03090' => 'spa', 'Sp1g05480' => 'spa', 'Sp2g07860' => 'spa', 'Sp2g08430' => 'spa', 'Sp2g08440' => 'spa', 'Sp2g26200' => 'spa', 'Sp4g13170' => 'spa', 'Sp6g33840' => 'spa', 'SpUn1204_0010' => 'spa', 'TAR365G0908' => 'tar', 'TAR381G1270' => 'tar', 'TAR381G1651' => 'tar', 'TAR625G1131' => 'tar', 'TAR633G0962' => 'tar', 'TAR633G1729' => 'tar', 'TAR633G1864' => 'tar', 'TAR636G0221' => 'tar', 'TAR636G0314' => 'tar', 'TAR636G3202' => 'tar', 'THA.LOC104800805' => 'tha', 'THA.LOC104801096' => 'tha', 'THA.LOC104801555' => 'tha', 'THA.LOC104808491' => 'tha', 'THA.LOC104808595' => 'tha', 'THA.LOC104815985' => 'tha', 'THA.LOC104822250' => 'tha', 'THA.LOC104826071' => 'tha', 'Thecc.01G265200' => 'tca', 'Thecc.01G265300' => 'tca', 'Thecc.01G265700' => 'tca', 'Thecc.03G109100' => 'tca', 'Thecc.04G245900' => 'tca', 'Thecc.04G246000' => 'tca', 'Thhalv10003334m.g' => 'esa', 'Thhalv10005508m.g' => 'esa', 'Thhalv10005643m.g' => 'esa', 'Thhalv10007316m.g' => 'esa', 'Thhalv10009006m.g' => 'esa', 'Thhalv10009309m.g' => 'esa', 'Thhalv10014917m.g' => 'esa', 'Thhalv10014919m.g' => 'esa', 'Thhalv10015393m.g' => 'esa', 'Thhalv10016515m.g' => 'esa', 'Thhalv10029242m.g' => 'esa', 'TPR.G16654' => 'tpr', 'TPR.G20589' => 'tpr', 'TPR.G23029' => 'tpr', 'TPR.G27731' => 'tpr', 'TPR.G28889' => 'tpr', 'TPR.G28899' => 'tpr', 'TPR.G30846' => 'tpr', 'TPR.G5452' => 'tpr', 'TPR.G5713' => 'tpr', 'TPR.G9046' => 'tpr', 'TPR.G9061' => 'tpr', 'TWI09G1075' => 'twi', 'TWI12G0806' => 'twi', 'TWI18G0108' => 'twi', 'TWI53G1361' => 'twi', 'TWI73G0185' => 'twi', 'TWI73G0427' => 'twi', 'unitig_37.g12001' => 'ugi', 'unitig_747.g21660' => 'ugi', 'unitig_748.g7232' => 'ugi', 'unitig_748.g7315' => 'ugi', 'unitig_85.g27262' => 'ugi', 'unitig_92.g28220' => 'ugi', 'vmacro02632' => 'vma', 'vmacro08410' => 'vma', 'vmacro08411' => 'vma', 'vmacro15407' => 'vma', 'VMungo0251G3619' => 'vmu', 'VMungo0720G1204' => 'vmu', 'VMungo0720G1918' => 'vmu', 'VMungo0720G2387' => 'vmu', 'VMungo0720G2961' => 'vmu', 'VMungo1215G2154' => 'vmu', 'VMungo1383G2411' => 'vmu', 'Zm00001eb051130' => 'zma', 'Zm00001eb116830' => 'zma', 'Zm00001eb116850' => 'zma', 'Zm00001eb151740' => 'zma', 'Zm00001eb292360' => 'zma', 'Zm00001eb301640' => 'zma' ) $gf_id = 'HOM05D000856' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000856' ) $data_identifier = 'HOM05D000856' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 13, 'ath' => (int) 10, 'atr' => (int) 1, 'acertr' => (int) 8, 'cqu' => (int) 6, 'bca' => (int) 21, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 11, 'car' => (int) 9, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 8, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 5, 'fan' => (int) 16, 'fve' => (int) 6, 'gma' => (int) 11, 'ghi' => (int) 19, 'gra' => (int) 9, 'vvi' => (int) 7, 'han' => (int) 17, 'cav' => (int) 5, 'hma' => (int) 2, 'vpl' => (int) 2, 'sun' => (int) 7, 'lal' => (int) 9, 'lja' => (int) 5, 'lonja' => (int) 9, 'lsa' => (int) 5, 'mes' => (int) 8, 'mpo' => (int) 3, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 10, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 15, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 9, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 9, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 6, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 5, 'spa' => (int) 10, 'tar' => (int) 10, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 11, 'tpr' => (int) 11, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 4, 'vmu' => (int) 7, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb301640' $species_info = array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ) $local_species = 'vvi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000856', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p00010' => 'bna', 'A03p04160' => 'bna', 'A03p17160' => 'bna', 'A04p23370' => 'bna', 'A05p14860' => 'bna', 'A08p37020' => 'bna', 'A09p08050' => 'bna', 'A09p66800' => 'bna', 'A09p67940' => 'bna', 'A10p02680' => 'bna', 'A10p05320' => 'bna', 'Aa31LG1G20560' => 'aar', 'Aa31LG1G20610' => 'aar', 'Aa31LG1G7810' => 'aar', 'Aa31LG5G3590' => 'aar', 'Aa31LG5G6140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3819' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4683' => 'aag', 'Actinidia04480' => 'ach', 'Actinidia05466' => 'ach', 'Actinidia08445' => 'ach', 'Actinidia21170' => 'ach', 'Actinidia24812' => 'ach', 'Actinidia24951' => 'ach', 'Actinidia40088' => 'ach', 'Ah.02g111660' => 'amhyb', 'Ah.11g048900' => 'amhyb', 'Ah.11g049910' => 'amhyb', 'AL1G13870' => 'aly', 'AL1G13880' => 'aly', 'AL1G16760' => 'aly', 'AL390U10020' => 'aly', 'AL4G25520' => 'aly', 'AL6G19890' => 'aly', 'AL6G19900' => 'aly', 'AL6G19910' => 'aly', 'AL8G40100' => 'aly', 'Aqoxy2G03562' => 'aox', 'Aqoxy5G00316' => 'aox', 'Aqoxy5G00926' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1628KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1H403S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2FU6SJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.882I6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8YRY2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YN1SN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AF70II' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZA8L1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F916KL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHRD8H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KTZ8QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S22EMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8M29T' => 'arhy', 'AT1G04270' => 'ath', 'AT1G04280' => 'ath', 'AT1G06750' => 'ath', 'AT1G33850' => 'ath', 'AT2G30630' => 'ath', 'AT5G09490' => 'ath', 'AT5G09500' => 'ath', 'AT5G09510' => 'ath', 'AT5G43640' => 'ath', 'AT5G63070' => 'ath', 'ATR0605G315' => 'atr', 'Atru.chr11.175' => 'acertr', 'Atru.chr11.653' => 'acertr', 'Atru.chr3.1616' => 'acertr', 'Atru.chr4.2230' => 'acertr', 'Atru.chr4.2232' => 'acertr', 'Atru.chr5.1598' => 'acertr', 'Atru.chr5.1600' => 'acertr', 'Atru.chr5.2188' => 'acertr', 'AUR62008326' => 'cqu', 'AUR62011922' => 'cqu', 'AUR62011924' => 'cqu', 'AUR62021771' => 'cqu', 'AUR62032237' => 'cqu', 'AUR62032240' => 'cqu', 'BcaB01g05572' => 'bca', 'BcaB02g10337' => 'bca', 'BcaB04g19944' => 'bca', 'BcaB05g21548' => 'bca', 'BcaB05g21549' => 'bca', 'BcaB05g23227' => 'bca', 'BcaB06g26256' => 'bca', 'BcaB06g26257' => 'bca', 'BcaB06g28379' => 'bca', 'BcaC02g11159' => 'bca', 'BcaC03g13258' => 'bca', 'BcaC03g13259' => 'bca', 'BcaC05g24456' => 'bca', 'BcaC05g24457' => 'bca', 'BcaC07g36922' => 'bca', 'BcaC07g36923' => 'bca', 'BcaC07g42050' => 'bca', 'BcaC07g42176' => 'bca', 'BcaC07g42195' => 'bca', 'BcaC07g42196' => 'bca', 'BcaNung06674' => 'bca', 'BolC2t06351H' => 'bol', 'BolC2t06352H' => 'bol', 'BolC3t12993H' => 'bol', 'BolC4t23525H' => 'bol', 'BolC4t27475H' => 'bol', 'BolC5t29025H' => 'bol', 'BolC5t29026H' => 'bol', 'BolC8t46898H' => 'bol', 'BolC8t46899H' => 'bol', 'BolC8t52630H' => 'bol', 'BolC8t52765H' => 'bol', 'BolC9t53824H' => 'bol', 'BraA03t09760Z' => 'bra', 'BraA03t10990Z' => 'bra', 'BraA05t20413Z' => 'bra', 'BraA08t35602Z' => 'bra', 'BraA09t36458Z' => 'bra', 'BraA09t42018Z' => 'bra', 'BraA09t42129Z' => 'bra', 'BraA10t42536Z' => 'bra', 'BraA10t42537Z' => 'bra', 'C01p10690' => 'bna', 'C02p03890' => 'bna', 'C02p03900' => 'bna', 'C03p04620' => 'bna', 'C04p19870' => 'bna', 'C04p59670' => 'bna', 'C05p02460' => 'bna', 'C05p02470' => 'bna', 'C08p00980' => 'bna', 'C08p00990' => 'bna', 'C08p51030' => 'bna', 'C08p52360' => 'bna', 'C09p09120' => 'bna', 'CAN.G19.15' => 'can', 'CAN.G251.10' => 'can', 'CAN.G251.9' => 'can', 'CAN.G398.24' => 'can', 'CAN.G410.32' => 'can', 'CAN.G881.2' => 'can', 'CANSAT01G3025' => 'cansat', 'CANSAT78G1211' => 'cansat', 'CANSAT78G1218' => 'cansat', 'CANSAT78G1521' => 'cansat', 'CANSAT78G1670' => 'cansat', 'CARHR003600' => 'chi', 'CARHR003610' => 'chi', 'CARHR006290' => 'chi', 'CARHR006430' => 'chi', 'CARHR124110' => 'chi', 'CARHR203870' => 'chi', 'CARHR203880' => 'chi', 'CARHR203890' => 'chi', 'CARHR276880' => 'chi', 'Carub.0001s0346' => 'cru', 'Carub.0001s0347' => 'cru', 'Carub.0001s0607' => 'cru', 'Carub.0003s2768' => 'cru', 'Carub.0003s2769' => 'cru', 'Carub.0004s1178' => 'cru', 'Carub.0006s0806' => 'cru', 'Carub.0006s0807' => 'cru', 'Carub.0006s0808' => 'cru', 'Carub.0008s0501' => 'cru', 'Carub.0008s2379' => 'cru', 'Ca_08655_v3' => 'car', 'Ca_08922_v3' => 'car', 'Ca_08923_v3' => 'car', 'Ca_09119_v3' => 'car', 'Ca_09703_v3' => 'car', 'Ca_09705_v3' => 'car', 'Ca_09835_v3' => 'car', 'Ca_26403_v3' => 'car', 'Ca_30719_v3' => 'car', 'CBR_g17958' => 'cbr', 'CBR_g40516' => 'cbr', 'Cc00_g05350' => 'ccan', 'Cc01_g18690' => 'ccan', 'Cc03_g04830' => 'ccan', 'Cc03_g04850' => 'ccan', 'CDE02G4469' => 'cde', 'CDE06G0883' => 'cde', 'CDE06G1295' => 'cde', 'CDE06G1390' => 'cde', 'CDE07G0584' => 'cde', 'CDE07G1084' => 'cde', 'CDE08G1259' => 'cde', 'Cfa002341' => 'cfa', 'Cfa024337' => 'cfa', 'Ciclev10004749m.g' => 'ccl', 'Ciclev10006127m.g' => 'ccl', 'Ciclev10019720m.g' => 'ccl', 'Ciclev10022652m.g' => 'ccl', 'CiPaw.01G190400' => 'cil', 'CiPaw.01G190500' => 'cil', 'CiPaw.02G116400' => 'cil', 'CiPaw.02G116500' => 'cil', 'CiPaw.04G183000' => 'cil', 'CiPaw.04G183300' => 'cil', 'ClCG05G004610' => 'cla', 'ClCG05G004620' => 'cla', 'ClCG06G006730' => 'cla', 'ClCG06G006740' => 'cla', 'ClCG11G003690' => 'cla', 'COL.COLO4_08276' => 'col', 'COL.COLO4_08277' => 'col', 'COL.COLO4_15787' => 'col', 'COL.COLO4_15789' => 'col', 'Cpa.g.c44815' => 'cpa', 'Cpa.g.sc52.144' => 'cpa', 'Cpa.g.sc58.46' => 'cpa', 'Cpa.g.sc58.47' => 'cpa', 'Cre08.g360900' => 'cre', 'CsaV3_2G013030' => 'csa', 'CsaV3_2G013050' => 'csa', 'CsaV3_2G015620' => 'csa', 'CsaV3_3G012590' => 'csa', 'CsaV3_3G012600' => 'csa', 'CSS0001641' => 'camsi', 'CSS0008310' => 'camsi', 'CSS0013011' => 'camsi', 'CSS0017147' => 'camsi', 'CSS0022970' => 'camsi', 'CSS0025655' => 'camsi', 'CSS0028665' => 'camsi', 'CSS0029117' => 'camsi', 'CSS0032024' => 'camsi', 'CSS0039681' => 'camsi', 'CSS0046516' => 'camsi', 'CSS0050307' => 'camsi', 'DCAR_005871' => 'dca', 'DCAR_007342' => 'dca', 'DCAR_024228' => 'dca', 'DCAR_027277' => 'dca', 'DCAR_030718' => 'dca', 'Dinv20287' => 'din', 'Dinv22461' => 'din', 'Dinv22464' => 'din', 'Dinv29912' => 'din', 'Dinv29913' => 'din', 'Dinv34580' => 'din', 'Dinv34582' => 'din', 'Dinv44632' => 'din', 'Duzib052G0266' => 'dzi', 'Duzib133G0907' => 'dzi', 'Duzib133G1034' => 'dzi', 'Duzib138G0207' => 'dzi', 'Duzib138G0491' => 'dzi', 'Duzib151G0812' => 'dzi', 'Duzib151G1166' => 'dzi', 'Duzib168G0192' => 'dzi', 'Duzib211G0077' => 'dzi', 'Duzib212G0429' => 'dzi', 'Duzib212G0472' => 'dzi', 'ECA233G2617' => 'eca', 'ECA236G4188' => 'eca', 'ECA240G0936' => 'eca', 'ECA240G1129' => 'eca', 'ECA247G0623' => 'eca', 'EL10Ac5g10451' => 'bvu', 'EL10Ac5g10453' => 'bvu', 'EL10Ac5g10894' => 'bvu', 'Eucgr.H00192' => 'egr', 'Eucgr.H00193' => 'egr', 'Eucgr.H00194' => 'egr', 'Eucgr.J01562' => 'egr', 'Eucgr.K03301' => 'egr', 'FAN02G0632' => 'fan', 'FAN05G5378' => 'fan', 'FAN09G3247' => 'fan', 'FAN12G0435' => 'fan', 'FAN12G2426' => 'fan', 'FAN14G1707' => 'fan', 'FAN14G4725' => 'fan', 'FAN15G2071' => 'fan', 'FAN17G3065' => 'fan', 'FAN19G1376' => 'fan', 'FAN20G0354' => 'fan', 'FAN20G2429' => 'fan', 'FAN20G2658' => 'fan', 'FAN24G2343' => 'fan', 'FAN27G2362' => 'fan', 'FAN28G1765' => 'fan', 'FvH4_1g16020' => 'fve', 'FvH4_2g04890' => 'fve', 'FvH4_2g22270' => 'fve', 'FvH4_4g02630' => 'fve', 'FvH4_4g02640' => 'fve', 'FvH4_6g02650' => 'fve', 'Glyma.02G140600' => 'gma', 'Glyma.03G159900' => 'gma', 'Glyma.05G234800' => 'gma', 'Glyma.07G269600' => 'gma', 'Glyma.08G042300' => 'gma', 'Glyma.10G033500' => 'gma', 'Glyma.10G185200' => 'gma', 'Glyma.17G004300' => 'gma', 'Glyma.19G161900' => 'gma', 'Glyma.20G205100' => 'gma', 'Glyma.20G205200' => 'gma', 'Gohir.A01G139101' => 'ghi', 'Gohir.A02G035600' => 'ghi', 'Gohir.A02G117901' => 'ghi', 'Gohir.A07G210100' => 'ghi', 'Gohir.A07G210200' => 'ghi', 'Gohir.A08G061100' => 'ghi', 'Gohir.A09G223000' => 'ghi', 'Gohir.A09G223100' => 'ghi', 'Gohir.A10G113900' => 'ghi', 'Gohir.A10G114000' => 'ghi', 'Gohir.D02G042300' => 'ghi', 'Gohir.D07G216100' => 'ghi', 'Gohir.D07G216200' => 'ghi', 'Gohir.D08G070400' => 'ghi', 'Gohir.D09G225000' => 'ghi', 'Gohir.D09G225100' => 'ghi', 'Gohir.D10G152300' => 'ghi', 'Gohir.D10G153200' => 'ghi', 'Gohir.D11G133701' => 'ghi', 'Gorai.004G074100' => 'gra', 'Gorai.005G046800' => 'gra', 'Gorai.006G246500' => 'gra', 'Gorai.006G246600' => 'gra', 'Gorai.007G142900' => 'gra', 'Gorai.011G171000' => 'gra', 'Gorai.011G171100' => 'gra', 'Gorai.013G104300' => 'gra', 'Gorai.013G104400' => 'gra', 'GSVIVG01000754001' => 'vvi', 'GSVIVG01000756001' => 'vvi', 'GSVIVG01010903001' => 'vvi', 'GSVIVG01017623001' => 'vvi', 'GSVIVG01018113001' => 'vvi', 'GSVIVG01018116001' => 'vvi', 'GSVIVG01018118001' => 'vvi', 'HanXRQChr03g0076211' => 'han', 'HanXRQChr03g0092431' => 'han', 'HanXRQChr03g0092441' => 'han', 'HanXRQChr03g0092591' => 'han', 'HanXRQChr03g0092671' => 'han', 'HanXRQChr03g0092681' => 'han', 'HanXRQChr03g0092691' => 'han', 'HanXRQChr03g0092701' => 'han', 'HanXRQChr03g0092721' => 'han', 'HanXRQChr03g0092731' => 'han', 'HanXRQChr04g0113681' => 'han', 'HanXRQChr10g0281371' => 'han', 'HanXRQChr11g0337141' => 'han', 'HanXRQChr13g0424521' => 'han', 'HanXRQChr13g0424531' => 'han', 'HanXRQChr13g0424541' => 'han', 'HanXRQChr16g0498221' => 'han', 'Haze_04377' => 'cav', 'Haze_11298' => 'cav', 'Haze_24547' => 'cav', 'Haze_24550' => 'cav', 'Haze_26587' => 'cav', 'Hma1.2p1_0650F.1_g195410' => 'hma', 'Hma1.2p1_0893F.1_g233470' => 'hma', 'HPP92_006508' => 'vpl', 'HPP92_024780' => 'vpl', 'Hund02688' => 'sun', 'Hund09380' => 'sun', 'Hund09381' => 'sun', 'Hund09832' => 'sun', 'Hund09833' => 'sun', 'Hund11351' => 'sun', 'Hund11513' => 'sun', 'Lalb_Chr06g0162591' => 'lal', 'Lalb_Chr06g0162601' => 'lal', 'Lalb_Chr06g0169321' => 'lal', 'Lalb_Chr09g0330951' => 'lal', 'Lalb_Chr16g0387631' => 'lal', 'Lalb_Chr21g0306241' => 'lal', 'Lalb_Chr25g0290051' => 'lal', 'Lalb_Chr25g0290061' => 'lal', 'Lalb_Chr25g0290071' => 'lal', 'Lj1g0003876' => 'lja', 'Lj1P1207T36' => 'lonja', 'Lj2C1156G12' => 'lonja', 'Lj3A793G39' => 'lonja', 'Lj3C580G2' => 'lonja', 'Lj3C780G2' => 'lonja', 'Lj3C780T4' => 'lonja', 'Lj3C793G9' => 'lonja', 'Lj4g0012960' => 'lja', 'Lj5g0021252' => 'lja', 'Lj5g0021484' => 'lja', 'Lj5g0024528' => 'lja', 'Lj6A399T12' => 'lonja', 'Lj6A656G65' => 'lonja', 'Lsat_1_v5_gn_3_125500' => 'lsa', 'Lsat_1_v5_gn_3_125540' => 'lsa', 'Lsat_1_v5_gn_5_72701' => 'lsa', 'Lsat_1_v5_gn_8_91560' => 'lsa', 'Lsat_1_v5_gn_9_9640' => 'lsa', 'Manes.01G200600' => 'mes', 'Manes.01G200700' => 'mes', 'Manes.03G168900' => 'mes', 'Manes.03G169000' => 'mes', 'Manes.05G085801' => 'mes', 'Manes.05G086200' => 'mes', 'Manes.15G036700' => 'mes', 'Manes.15G036900' => 'mes', 'Mapoly0004s0172' => 'mpo', 'Mapoly0023s0001' => 'mpo', 'Mapoly0142s0012' => 'mpo', 'MBI01_g32854_MAGBIO' => 'mbi', 'MBI11_g24427_MAGBIO' => 'mbi', 'MBI11_g47319_MAGBIO' => 'mbi', 'MCO01G433' => 'mco', 'MD00G1187800' => 'mdo', 'MD04G1226500' => 'mdo', 'MD05G1203900' => 'mdo', 'MD10G1191100' => 'mdo', 'MD12G1243500' => 'mdo', 'MD13G1207000' => 'mdo', 'MD13G1207100' => 'mdo', 'MD16G1208600' => 'mdo', 'Medtr1g050352' => 'mtr', 'Medtr1g070385' => 'mtr', 'Medtr1g070450' => 'mtr', 'Medtr1g075200' => 'mtr', 'Medtr1g075250' => 'mtr', 'Medtr1g075260' => 'mtr', 'Medtr1g475250' => 'mtr', 'Medtr4g075450' => 'mtr', 'Medtr7g096300' => 'mtr', 'Medtr8g105110' => 'mtr', 'MELO3C006470.2' => 'cme', 'MELO3C006471.2' => 'cme', 'MELO3C020772.2' => 'cme', 'MELO3C026780.2' => 'cme', 'MELO3C026781.2' => 'cme', 'Migut.D00390' => 'egut', 'Migut.G00435' => 'egut', 'Migut.G00436' => 'egut', 'Migut.G00718' => 'egut', 'MSTRG.21891' => 'ama', 'MSTRG.26910' => 'ama', 'MSTRG.4099' => 'ama', 'MSTRG.9925' => 'ama', 'Nitab4.5_0000165g0010' => 'nta', 'Nitab4.5_0000209g0180' => 'nta', 'Nitab4.5_0000244g0440' => 'nta', 'Nitab4.5_0000525g0220' => 'nta', 'Nitab4.5_0001597g0020' => 'nta', 'Nitab4.5_0001878g0040' => 'nta', 'Nitab4.5_0001878g0060' => 'nta', 'Nitab4.5_0002838g0100' => 'nta', 'Nitab4.5_0002838g0120' => 'nta', 'Nitab4.5_0004798g0030' => 'nta', 'Nitab4.5_0005420g0010' => 'nta', 'Nitab4.5_0005507g0010' => 'nta', 'Nitab4.5_0005574g0020' => 'nta', 'Nitab4.5_0005838g0010' => 'nta', 'Nitab4.5_0010580g0020' => 'nta', 'Nn1g02599' => 'nnu', 'Nn1g02608' => 'nnu', 'Nn3g17742' => 'nnu', 'Nn3g19534' => 'nnu', 'Nn3g19535' => 'nnu', 'Oeu008790.1' => 'oeu', 'Oeu008792.1' => 'oeu', 'Oeu032590.1' => 'oeu', 'Oeu035349.1' => 'oeu', 'Oeu049791.1' => 'oeu', 'Os01g0774500' => 'osa', 'Os03g0628800' => 'osa', 'Os03g0798600' => 'osa', 'Os05g0508800' => 'osa', 'Peaxi162Scf00036g02018' => 'pax', 'Peaxi162Scf00578g00032' => 'pax', 'Peaxi162Scf00578g00317' => 'pax', 'Peaxi162Scf00785g00114' => 'pax', 'Peaxi162Scf00813g00119' => 'pax', 'Peaxi162Scf00906g00227' => 'pax', 'PGR004G0875' => 'pgr', 'PGR004G2424' => 'pgr', 'PGR031G1239' => 'pgr', 'PGR031G2474' => 'pgr', 'PGR044G0423' => 'pgr', 'PGSC0003DMG400001128' => 'stu', 'PGSC0003DMG400007336' => 'stu', 'PGSC0003DMG400016318' => 'stu', 'PGSC0003DMG400016319' => 'stu', 'PGSC0003DMG400018074' => 'stu', 'Phvul.001G157700' => 'pvu', 'Phvul.002G148550' => 'pvu', 'Phvul.002G320200' => 'pvu', 'Phvul.003G089200' => 'pvu', 'Phvul.007G126000' => 'pvu', 'Phvul.007G126100' => 'pvu', 'Phvul.007G178000' => 'pvu', 'Phvul.007G178200' => 'pvu', 'Potri.002G043000' => 'ptr', 'Potri.002G043200' => 'ptr', 'Potri.003G123750' => 'ptr', 'Potri.005G055401' => 'ptr', 'Potri.005G219700' => 'ptr', 'Potri.005G220000' => 'ptr', 'Potri.008G161901' => 'ptr', 'Potri.008G162000' => 'ptr', 'Potri.008G162400' => 'ptr', 'Potri.010G076900' => 'ptr', 'Pp3c12_9180' => 'ppa', 'Pp3c13_19770' => 'ppa', 'Pp3c14_22950' => 'ppa', 'Pp3c16_12160' => 'ppa', 'Pp3c27_7820' => 'ppa', 'Pp3c2_3490' => 'ppa', 'Pp3c3_23700' => 'ppa', 'Pp3c3_36520' => 'ppa', 'Pp3c4_15250' => 'ppa', 'PRCOL_00007002' => 'pco', 'Prupe.1G030600' => 'ppe', 'Prupe.1G030700' => 'ppe', 'Prupe.6G345200' => 'ppe', 'Prupe.8G230300' => 'ppe', 'Prupe.8G230500' => 'ppe', 'Psat3g059600' => 'psa', 'Psat5g200920' => 'psa', 'Psat6g056440' => 'psa', 'Psat6g057360' => 'psa', 'Psat6g134120' => 'psa', 'Psat6g134160' => 'psa', 'Psat7g008640' => 'psa', 'Psat7g185240' => 'psa', 'PSO017G1330' => 'pso', 'PSO063G6097' => 'pso', 'PSO170G0835' => 'pso', 'PSO170G2499' => 'pso', 'PSO210G5058' => 'pso', 'PSO210G6154' => 'pso', 'PSO585G0031' => 'pso', 'PSO832G0264' => 'pso', 'PSO832G4288' => 'pso', 'QL03p027355' => 'qlo', 'QL03p027430' => 'qlo', 'QL04p081380' => 'qlo', 'QL06p015642' => 'qlo', 'QL06p015650' => 'qlo', 'QL06p015686' => 'qlo', 'QL12p042927' => 'qlo', 'QL93p1863_0035' => 'qlo', 'RcHm_v2.0_Chr3g0450581' => 'rch', 'RcHm_v2.0_Chr4g0390371' => 'rch', 'RcHm_v2.0_Chr4g0390381' => 'rch', 'RcHm_v2.0_Chr4g0390491' => 'rch', 'RcHm_v2.0_Chr4g0390501' => 'rch', 'RcHm_v2.0_Chr6g0289231' => 'rch', 'Rhsim04G0190400' => 'rsi', 'Rhsim04G0190500' => 'rsi', 'Rhsim04G0190600' => 'rsi', 'Rhsim13G0031400' => 'rsi', 'Rhsim13G0165600' => 'rsi', 'RhsimUnG0114600' => 'rsi', 'RhsimUnG0114700' => 'rsi', 'Sabra02G0034800' => 'sbr', 'Sabra02G0035100' => 'sbr', 'Sabra05G0168600' => 'sbr', 'Sabra05G0168800' => 'sbr', 'Sabra08G0123700' => 'sbr', 'Sabra10G0031900' => 'sbr', 'Sabra13G0039000' => 'sbr', 'SalBow2G0782' => 'sbo', 'SalBow2G1403' => 'sbo', 'SalBow4G0074' => 'sbo', 'SalBow4G2635' => 'sbo', 'SalBow5G3010' => 'sbo', 'Sc05g0000870' => 'sci', 'Sc05g0000890' => 'sci', 'Sc13g0005000' => 'sci', 'Sc13g0005030' => 'sci', 'Sc19g0003790' => 'sci', 'Sc19g0003800' => 'sci', 'Sed0003467' => 'sed', 'Sed0009355' => 'sed', 'Sed0009894' => 'sed', 'Sed0011972' => 'sed', 'Sed0021483' => 'sed', 'Sed0021750' => 'sed', 'Sed0026279' => 'sed', 'SEGI_05312' => 'sgi', 'SEGI_10112' => 'sgi', 'SEGI_15835' => 'sgi', 'SEGI_30386' => 'sgi', 'SEGI_34122' => 'sgi', 'SEGI_35063' => 'sgi', 'SGA_v2.0_scaffold101G29794' => 'sas', 'SGA_v2.0_scaffold1G00573' => 'sas', 'SGA_v2.0_scaffold79G25637' => 'sas', 'SGA_v2.0_scaffold88G27283' => 'sas', 'SGA_v2.0_scaffold88G27285' => 'sas', 'SGA_v2.0_scaffold88G27331' => 'sas', 'SHI09937' => 'shi', 'SMO119G0302' => 'smo', 'SMO137G0231' => 'smo', 'SMO367G1151' => 'smo', 'Solyc02g082000.3' => 'sly', 'Solyc06g031670.3' => 'sly', 'Solyc06g053810.3' => 'sly', 'Solyc07g025457.1' => 'sly', 'Solyc08g059740.1' => 'sly', 'Solyc08g059750.3' => 'sly', 'Solyc09g083370.3' => 'sly', 'Solyc12g038950.3' => 'sly', 'Sopen02g026630' => 'spe', 'Sopen06g018930' => 'spe', 'Sopen06g018940' => 'spe', 'Sopen08g009460' => 'spe', 'Sopen09g032290' => 'spe', 'Sp1g03080' => 'spa', 'Sp1g03090' => 'spa', 'Sp1g05480' => 'spa', 'Sp2g07860' => 'spa', 'Sp2g08430' => 'spa', 'Sp2g08440' => 'spa', 'Sp2g26200' => 'spa', 'Sp4g13170' => 'spa', 'Sp6g33840' => 'spa', 'SpUn1204_0010' => 'spa', 'TAR365G0908' => 'tar', 'TAR381G1270' => 'tar', 'TAR381G1651' => 'tar', 'TAR625G1131' => 'tar', 'TAR633G0962' => 'tar', 'TAR633G1729' => 'tar', 'TAR633G1864' => 'tar', 'TAR636G0221' => 'tar', 'TAR636G0314' => 'tar', 'TAR636G3202' => 'tar', 'THA.LOC104800805' => 'tha', 'THA.LOC104801096' => 'tha', 'THA.LOC104801555' => 'tha', 'THA.LOC104808491' => 'tha', 'THA.LOC104808595' => 'tha', 'THA.LOC104815985' => 'tha', 'THA.LOC104822250' => 'tha', 'THA.LOC104826071' => 'tha', 'Thecc.01G265200' => 'tca', 'Thecc.01G265300' => 'tca', 'Thecc.01G265700' => 'tca', 'Thecc.03G109100' => 'tca', 'Thecc.04G245900' => 'tca', 'Thecc.04G246000' => 'tca', 'Thhalv10003334m.g' => 'esa', 'Thhalv10005508m.g' => 'esa', 'Thhalv10005643m.g' => 'esa', 'Thhalv10007316m.g' => 'esa', 'Thhalv10009006m.g' => 'esa', 'Thhalv10009309m.g' => 'esa', 'Thhalv10014917m.g' => 'esa', 'Thhalv10014919m.g' => 'esa', 'Thhalv10015393m.g' => 'esa', 'Thhalv10016515m.g' => 'esa', 'Thhalv10029242m.g' => 'esa', 'TPR.G16654' => 'tpr', 'TPR.G20589' => 'tpr', 'TPR.G23029' => 'tpr', 'TPR.G27731' => 'tpr', 'TPR.G28889' => 'tpr', 'TPR.G28899' => 'tpr', 'TPR.G30846' => 'tpr', 'TPR.G5452' => 'tpr', 'TPR.G5713' => 'tpr', 'TPR.G9046' => 'tpr', 'TPR.G9061' => 'tpr', 'TWI09G1075' => 'twi', 'TWI12G0806' => 'twi', 'TWI18G0108' => 'twi', 'TWI53G1361' => 'twi', 'TWI73G0185' => 'twi', 'TWI73G0427' => 'twi', 'unitig_37.g12001' => 'ugi', 'unitig_747.g21660' => 'ugi', 'unitig_748.g7232' => 'ugi', 'unitig_748.g7315' => 'ugi', 'unitig_85.g27262' => 'ugi', 'unitig_92.g28220' => 'ugi', 'vmacro02632' => 'vma', 'vmacro08410' => 'vma', 'vmacro08411' => 'vma', 'vmacro15407' => 'vma', 'VMungo0251G3619' => 'vmu', 'VMungo0720G1204' => 'vmu', 'VMungo0720G1918' => 'vmu', 'VMungo0720G2387' => 'vmu', 'VMungo0720G2961' => 'vmu', 'VMungo1215G2154' => 'vmu', 'VMungo1383G2411' => 'vmu', 'Zm00001eb051130' => 'zma', 'Zm00001eb116830' => 'zma', 'Zm00001eb116850' => 'zma', 'Zm00001eb151740' => 'zma', 'Zm00001eb292360' => 'zma', 'Zm00001eb301640' => 'zma' ), 'gf_id' => 'HOM05D000856', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000856' ), 'data_identifier' => 'HOM05D000856', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000856', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p00010' => 'bna', 'A03p04160' => 'bna', 'A03p17160' => 'bna', 'A04p23370' => 'bna', 'A05p14860' => 'bna', 'A08p37020' => 'bna', 'A09p08050' => 'bna', 'A09p66800' => 'bna', 'A09p67940' => 'bna', 'A10p02680' => 'bna', 'A10p05320' => 'bna', 'Aa31LG1G20560' => 'aar', 'Aa31LG1G20610' => 'aar', 'Aa31LG1G7810' => 'aar', 'Aa31LG5G3590' => 'aar', 'Aa31LG5G6140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3819' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4683' => 'aag', 'Actinidia04480' => 'ach', 'Actinidia05466' => 'ach', 'Actinidia08445' => 'ach', 'Actinidia21170' => 'ach', 'Actinidia24812' => 'ach', 'Actinidia24951' => 'ach', 'Actinidia40088' => 'ach', 'Ah.02g111660' => 'amhyb', 'Ah.11g048900' => 'amhyb', 'Ah.11g049910' => 'amhyb', 'AL1G13870' => 'aly', 'AL1G13880' => 'aly', 'AL1G16760' => 'aly', 'AL390U10020' => 'aly', 'AL4G25520' => 'aly', 'AL6G19890' => 'aly', 'AL6G19900' => 'aly', 'AL6G19910' => 'aly', 'AL8G40100' => 'aly', 'Aqoxy2G03562' => 'aox', 'Aqoxy5G00316' => 'aox', 'Aqoxy5G00926' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1628KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1H403S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2FU6SJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.882I6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8YRY2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YN1SN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AF70II' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZA8L1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F916KL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHRD8H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KTZ8QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S22EMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8M29T' => 'arhy', 'AT1G04270' => 'ath', 'AT1G04280' => 'ath', 'AT1G06750' => 'ath', 'AT1G33850' => 'ath', 'AT2G30630' => 'ath', 'AT5G09490' => 'ath', 'AT5G09500' => 'ath', 'AT5G09510' => 'ath', 'AT5G43640' => 'ath', 'AT5G63070' => 'ath', 'ATR0605G315' => 'atr', 'Atru.chr11.175' => 'acertr', 'Atru.chr11.653' => 'acertr', 'Atru.chr3.1616' => 'acertr', 'Atru.chr4.2230' => 'acertr', 'Atru.chr4.2232' => 'acertr', 'Atru.chr5.1598' => 'acertr', 'Atru.chr5.1600' => 'acertr', 'Atru.chr5.2188' => 'acertr', 'AUR62008326' => 'cqu', 'AUR62011922' => 'cqu', 'AUR62011924' => 'cqu', 'AUR62021771' => 'cqu', 'AUR62032237' => 'cqu', 'AUR62032240' => 'cqu', 'BcaB01g05572' => 'bca', 'BcaB02g10337' => 'bca', 'BcaB04g19944' => 'bca', 'BcaB05g21548' => 'bca', 'BcaB05g21549' => 'bca', 'BcaB05g23227' => 'bca', 'BcaB06g26256' => 'bca', 'BcaB06g26257' => 'bca', 'BcaB06g28379' => 'bca', 'BcaC02g11159' => 'bca', 'BcaC03g13258' => 'bca', 'BcaC03g13259' => 'bca', 'BcaC05g24456' => 'bca', 'BcaC05g24457' => 'bca', 'BcaC07g36922' => 'bca', 'BcaC07g36923' => 'bca', 'BcaC07g42050' => 'bca', 'BcaC07g42176' => 'bca', 'BcaC07g42195' => 'bca', 'BcaC07g42196' => 'bca', 'BcaNung06674' => 'bca', 'BolC2t06351H' => 'bol', 'BolC2t06352H' => 'bol', 'BolC3t12993H' => 'bol', 'BolC4t23525H' => 'bol', 'BolC4t27475H' => 'bol', 'BolC5t29025H' => 'bol', 'BolC5t29026H' => 'bol', 'BolC8t46898H' => 'bol', 'BolC8t46899H' => 'bol', 'BolC8t52630H' => 'bol', 'BolC8t52765H' => 'bol', 'BolC9t53824H' => 'bol', 'BraA03t09760Z' => 'bra', 'BraA03t10990Z' => 'bra', 'BraA05t20413Z' => 'bra', 'BraA08t35602Z' => 'bra', 'BraA09t36458Z' => 'bra', 'BraA09t42018Z' => 'bra', 'BraA09t42129Z' => 'bra', 'BraA10t42536Z' => 'bra', 'BraA10t42537Z' => 'bra', 'C01p10690' => 'bna', 'C02p03890' => 'bna', 'C02p03900' => 'bna', 'C03p04620' => 'bna', 'C04p19870' => 'bna', 'C04p59670' => 'bna', 'C05p02460' => 'bna', 'C05p02470' => 'bna', 'C08p00980' => 'bna', 'C08p00990' => 'bna', 'C08p51030' => 'bna', 'C08p52360' => 'bna', 'C09p09120' => 'bna', 'CAN.G19.15' => 'can', 'CAN.G251.10' => 'can', 'CAN.G251.9' => 'can', 'CAN.G398.24' => 'can', 'CAN.G410.32' => 'can', 'CAN.G881.2' => 'can', 'CANSAT01G3025' => 'cansat', 'CANSAT78G1211' => 'cansat', 'CANSAT78G1218' => 'cansat', 'CANSAT78G1521' => 'cansat', 'CANSAT78G1670' => 'cansat', 'CARHR003600' => 'chi', 'CARHR003610' => 'chi', 'CARHR006290' => 'chi', 'CARHR006430' => 'chi', 'CARHR124110' => 'chi', 'CARHR203870' => 'chi', 'CARHR203880' => 'chi', 'CARHR203890' => 'chi', 'CARHR276880' => 'chi', 'Carub.0001s0346' => 'cru', 'Carub.0001s0347' => 'cru', 'Carub.0001s0607' => 'cru', 'Carub.0003s2768' => 'cru', 'Carub.0003s2769' => 'cru', 'Carub.0004s1178' => 'cru', 'Carub.0006s0806' => 'cru', 'Carub.0006s0807' => 'cru', 'Carub.0006s0808' => 'cru', 'Carub.0008s0501' => 'cru', 'Carub.0008s2379' => 'cru', 'Ca_08655_v3' => 'car', 'Ca_08922_v3' => 'car', 'Ca_08923_v3' => 'car', 'Ca_09119_v3' => 'car', 'Ca_09703_v3' => 'car', 'Ca_09705_v3' => 'car', 'Ca_09835_v3' => 'car', 'Ca_26403_v3' => 'car', 'Ca_30719_v3' => 'car', 'CBR_g17958' => 'cbr', 'CBR_g40516' => 'cbr', 'Cc00_g05350' => 'ccan', 'Cc01_g18690' => 'ccan', 'Cc03_g04830' => 'ccan', 'Cc03_g04850' => 'ccan', 'CDE02G4469' => 'cde', 'CDE06G0883' => 'cde', 'CDE06G1295' => 'cde', 'CDE06G1390' => 'cde', 'CDE07G0584' => 'cde', 'CDE07G1084' => 'cde', 'CDE08G1259' => 'cde', 'Cfa002341' => 'cfa', 'Cfa024337' => 'cfa', 'Ciclev10004749m.g' => 'ccl', 'Ciclev10006127m.g' => 'ccl', 'Ciclev10019720m.g' => 'ccl', 'Ciclev10022652m.g' => 'ccl', 'CiPaw.01G190400' => 'cil', 'CiPaw.01G190500' => 'cil', 'CiPaw.02G116400' => 'cil', 'CiPaw.02G116500' => 'cil', 'CiPaw.04G183000' => 'cil', 'CiPaw.04G183300' => 'cil', 'ClCG05G004610' => 'cla', 'ClCG05G004620' => 'cla', 'ClCG06G006730' => 'cla', 'ClCG06G006740' => 'cla', 'ClCG11G003690' => 'cla', 'COL.COLO4_08276' => 'col', 'COL.COLO4_08277' => 'col', 'COL.COLO4_15787' => 'col', 'COL.COLO4_15789' => 'col', 'Cpa.g.c44815' => 'cpa', 'Cpa.g.sc52.144' => 'cpa', 'Cpa.g.sc58.46' => 'cpa', 'Cpa.g.sc58.47' => 'cpa', 'Cre08.g360900' => 'cre', 'CsaV3_2G013030' => 'csa', 'CsaV3_2G013050' => 'csa', 'CsaV3_2G015620' => 'csa', 'CsaV3_3G012590' => 'csa', 'CsaV3_3G012600' => 'csa', 'CSS0001641' => 'camsi', 'CSS0008310' => 'camsi', 'CSS0013011' => 'camsi', 'CSS0017147' => 'camsi', 'CSS0022970' => 'camsi', 'CSS0025655' => 'camsi', 'CSS0028665' => 'camsi', 'CSS0029117' => 'camsi', 'CSS0032024' => 'camsi', 'CSS0039681' => 'camsi', 'CSS0046516' => 'camsi', 'CSS0050307' => 'camsi', 'DCAR_005871' => 'dca', 'DCAR_007342' => 'dca', 'DCAR_024228' => 'dca', 'DCAR_027277' => 'dca', 'DCAR_030718' => 'dca', 'Dinv20287' => 'din', 'Dinv22461' => 'din', 'Dinv22464' => 'din', 'Dinv29912' => 'din', 'Dinv29913' => 'din', 'Dinv34580' => 'din', 'Dinv34582' => 'din', 'Dinv44632' => 'din', 'Duzib052G0266' => 'dzi', 'Duzib133G0907' => 'dzi', 'Duzib133G1034' => 'dzi', 'Duzib138G0207' => 'dzi', 'Duzib138G0491' => 'dzi', 'Duzib151G0812' => 'dzi', 'Duzib151G1166' => 'dzi', 'Duzib168G0192' => 'dzi', 'Duzib211G0077' => 'dzi', 'Duzib212G0429' => 'dzi', 'Duzib212G0472' => 'dzi', 'ECA233G2617' => 'eca', 'ECA236G4188' => 'eca', 'ECA240G0936' => 'eca', 'ECA240G1129' => 'eca', 'ECA247G0623' => 'eca', 'EL10Ac5g10451' => 'bvu', 'EL10Ac5g10453' => 'bvu', 'EL10Ac5g10894' => 'bvu', 'Eucgr.H00192' => 'egr', 'Eucgr.H00193' => 'egr', 'Eucgr.H00194' => 'egr', 'Eucgr.J01562' => 'egr', 'Eucgr.K03301' => 'egr', 'FAN02G0632' => 'fan', 'FAN05G5378' => 'fan', 'FAN09G3247' => 'fan', 'FAN12G0435' => 'fan', 'FAN12G2426' => 'fan', 'FAN14G1707' => 'fan', 'FAN14G4725' => 'fan', 'FAN15G2071' => 'fan', 'FAN17G3065' => 'fan', 'FAN19G1376' => 'fan', 'FAN20G0354' => 'fan', 'FAN20G2429' => 'fan', 'FAN20G2658' => 'fan', 'FAN24G2343' => 'fan', 'FAN27G2362' => 'fan', 'FAN28G1765' => 'fan', 'FvH4_1g16020' => 'fve', 'FvH4_2g04890' => 'fve', 'FvH4_2g22270' => 'fve', 'FvH4_4g02630' => 'fve', 'FvH4_4g02640' => 'fve', 'FvH4_6g02650' => 'fve', 'Glyma.02G140600' => 'gma', 'Glyma.03G159900' => 'gma', 'Glyma.05G234800' => 'gma', 'Glyma.07G269600' => 'gma', 'Glyma.08G042300' => 'gma', 'Glyma.10G033500' => 'gma', 'Glyma.10G185200' => 'gma', 'Glyma.17G004300' => 'gma', 'Glyma.19G161900' => 'gma', 'Glyma.20G205100' => 'gma', 'Glyma.20G205200' => 'gma', 'Gohir.A01G139101' => 'ghi', 'Gohir.A02G035600' => 'ghi', 'Gohir.A02G117901' => 'ghi', 'Gohir.A07G210100' => 'ghi', 'Gohir.A07G210200' => 'ghi', 'Gohir.A08G061100' => 'ghi', 'Gohir.A09G223000' => 'ghi', 'Gohir.A09G223100' => 'ghi', 'Gohir.A10G113900' => 'ghi', 'Gohir.A10G114000' => 'ghi', 'Gohir.D02G042300' => 'ghi', 'Gohir.D07G216100' => 'ghi', 'Gohir.D07G216200' => 'ghi', 'Gohir.D08G070400' => 'ghi', 'Gohir.D09G225000' => 'ghi', 'Gohir.D09G225100' => 'ghi', 'Gohir.D10G152300' => 'ghi', 'Gohir.D10G153200' => 'ghi', 'Gohir.D11G133701' => 'ghi', 'Gorai.004G074100' => 'gra', 'Gorai.005G046800' => 'gra', 'Gorai.006G246500' => 'gra', 'Gorai.006G246600' => 'gra', 'Gorai.007G142900' => 'gra', 'Gorai.011G171000' => 'gra', 'Gorai.011G171100' => 'gra', 'Gorai.013G104300' => 'gra', 'Gorai.013G104400' => 'gra', 'GSVIVG01000754001' => 'vvi', 'GSVIVG01000756001' => 'vvi', 'GSVIVG01010903001' => 'vvi', 'GSVIVG01017623001' => 'vvi', 'GSVIVG01018113001' => 'vvi', 'GSVIVG01018116001' => 'vvi', 'GSVIVG01018118001' => 'vvi', 'HanXRQChr03g0076211' => 'han', 'HanXRQChr03g0092431' => 'han', 'HanXRQChr03g0092441' => 'han', 'HanXRQChr03g0092591' => 'han', 'HanXRQChr03g0092671' => 'han', 'HanXRQChr03g0092681' => 'han', 'HanXRQChr03g0092691' => 'han', 'HanXRQChr03g0092701' => 'han', 'HanXRQChr03g0092721' => 'han', 'HanXRQChr03g0092731' => 'han', 'HanXRQChr04g0113681' => 'han', 'HanXRQChr10g0281371' => 'han', 'HanXRQChr11g0337141' => 'han', 'HanXRQChr13g0424521' => 'han', 'HanXRQChr13g0424531' => 'han', 'HanXRQChr13g0424541' => 'han', 'HanXRQChr16g0498221' => 'han', 'Haze_04377' => 'cav', 'Haze_11298' => 'cav', 'Haze_24547' => 'cav', 'Haze_24550' => 'cav', 'Haze_26587' => 'cav', 'Hma1.2p1_0650F.1_g195410' => 'hma', 'Hma1.2p1_0893F.1_g233470' => 'hma', 'HPP92_006508' => 'vpl', 'HPP92_024780' => 'vpl', 'Hund02688' => 'sun', 'Hund09380' => 'sun', 'Hund09381' => 'sun', 'Hund09832' => 'sun', 'Hund09833' => 'sun', 'Hund11351' => 'sun', 'Hund11513' => 'sun', 'Lalb_Chr06g0162591' => 'lal', 'Lalb_Chr06g0162601' => 'lal', 'Lalb_Chr06g0169321' => 'lal', 'Lalb_Chr09g0330951' => 'lal', 'Lalb_Chr16g0387631' => 'lal', 'Lalb_Chr21g0306241' => 'lal', 'Lalb_Chr25g0290051' => 'lal', 'Lalb_Chr25g0290061' => 'lal', 'Lalb_Chr25g0290071' => 'lal', 'Lj1g0003876' => 'lja', 'Lj1P1207T36' => 'lonja', 'Lj2C1156G12' => 'lonja', 'Lj3A793G39' => 'lonja', 'Lj3C580G2' => 'lonja', 'Lj3C780G2' => 'lonja', 'Lj3C780T4' => 'lonja', 'Lj3C793G9' => 'lonja', 'Lj4g0012960' => 'lja', 'Lj5g0021252' => 'lja', 'Lj5g0021484' => 'lja', 'Lj5g0024528' => 'lja', 'Lj6A399T12' => 'lonja', 'Lj6A656G65' => 'lonja', 'Lsat_1_v5_gn_3_125500' => 'lsa', 'Lsat_1_v5_gn_3_125540' => 'lsa', 'Lsat_1_v5_gn_5_72701' => 'lsa', 'Lsat_1_v5_gn_8_91560' => 'lsa', 'Lsat_1_v5_gn_9_9640' => 'lsa', 'Manes.01G200600' => 'mes', 'Manes.01G200700' => 'mes', 'Manes.03G168900' => 'mes', 'Manes.03G169000' => 'mes', 'Manes.05G085801' => 'mes', 'Manes.05G086200' => 'mes', 'Manes.15G036700' => 'mes', 'Manes.15G036900' => 'mes', 'Mapoly0004s0172' => 'mpo', 'Mapoly0023s0001' => 'mpo', 'Mapoly0142s0012' => 'mpo', 'MBI01_g32854_MAGBIO' => 'mbi', 'MBI11_g24427_MAGBIO' => 'mbi', 'MBI11_g47319_MAGBIO' => 'mbi', 'MCO01G433' => 'mco', 'MD00G1187800' => 'mdo', 'MD04G1226500' => 'mdo', 'MD05G1203900' => 'mdo', 'MD10G1191100' => 'mdo', 'MD12G1243500' => 'mdo', 'MD13G1207000' => 'mdo', 'MD13G1207100' => 'mdo', 'MD16G1208600' => 'mdo', 'Medtr1g050352' => 'mtr', 'Medtr1g070385' => 'mtr', 'Medtr1g070450' => 'mtr', 'Medtr1g075200' => 'mtr', 'Medtr1g075250' => 'mtr', 'Medtr1g075260' => 'mtr', 'Medtr1g475250' => 'mtr', 'Medtr4g075450' => 'mtr', 'Medtr7g096300' => 'mtr', 'Medtr8g105110' => 'mtr', 'MELO3C006470.2' => 'cme', 'MELO3C006471.2' => 'cme', 'MELO3C020772.2' => 'cme', 'MELO3C026780.2' => 'cme', 'MELO3C026781.2' => 'cme', 'Migut.D00390' => 'egut', 'Migut.G00435' => 'egut', 'Migut.G00436' => 'egut', 'Migut.G00718' => 'egut', 'MSTRG.21891' => 'ama', 'MSTRG.26910' => 'ama', 'MSTRG.4099' => 'ama', 'MSTRG.9925' => 'ama', 'Nitab4.5_0000165g0010' => 'nta', 'Nitab4.5_0000209g0180' => 'nta', 'Nitab4.5_0000244g0440' => 'nta', 'Nitab4.5_0000525g0220' => 'nta', 'Nitab4.5_0001597g0020' => 'nta', 'Nitab4.5_0001878g0040' => 'nta', 'Nitab4.5_0001878g0060' => 'nta', 'Nitab4.5_0002838g0100' => 'nta', 'Nitab4.5_0002838g0120' => 'nta', 'Nitab4.5_0004798g0030' => 'nta', 'Nitab4.5_0005420g0010' => 'nta', 'Nitab4.5_0005507g0010' => 'nta', 'Nitab4.5_0005574g0020' => 'nta', 'Nitab4.5_0005838g0010' => 'nta', 'Nitab4.5_0010580g0020' => 'nta', 'Nn1g02599' => 'nnu', 'Nn1g02608' => 'nnu', 'Nn3g17742' => 'nnu', 'Nn3g19534' => 'nnu', 'Nn3g19535' => 'nnu', 'Oeu008790.1' => 'oeu', 'Oeu008792.1' => 'oeu', 'Oeu032590.1' => 'oeu', 'Oeu035349.1' => 'oeu', 'Oeu049791.1' => 'oeu', 'Os01g0774500' => 'osa', 'Os03g0628800' => 'osa', 'Os03g0798600' => 'osa', 'Os05g0508800' => 'osa', 'Peaxi162Scf00036g02018' => 'pax', 'Peaxi162Scf00578g00032' => 'pax', 'Peaxi162Scf00578g00317' => 'pax', 'Peaxi162Scf00785g00114' => 'pax', 'Peaxi162Scf00813g00119' => 'pax', 'Peaxi162Scf00906g00227' => 'pax', 'PGR004G0875' => 'pgr', 'PGR004G2424' => 'pgr', 'PGR031G1239' => 'pgr', 'PGR031G2474' => 'pgr', 'PGR044G0423' => 'pgr', 'PGSC0003DMG400001128' => 'stu', 'PGSC0003DMG400007336' => 'stu', 'PGSC0003DMG400016318' => 'stu', 'PGSC0003DMG400016319' => 'stu', 'PGSC0003DMG400018074' => 'stu', 'Phvul.001G157700' => 'pvu', 'Phvul.002G148550' => 'pvu', 'Phvul.002G320200' => 'pvu', 'Phvul.003G089200' => 'pvu', 'Phvul.007G126000' => 'pvu', 'Phvul.007G126100' => 'pvu', 'Phvul.007G178000' => 'pvu', 'Phvul.007G178200' => 'pvu', 'Potri.002G043000' => 'ptr', 'Potri.002G043200' => 'ptr', 'Potri.003G123750' => 'ptr', 'Potri.005G055401' => 'ptr', 'Potri.005G219700' => 'ptr', 'Potri.005G220000' => 'ptr', 'Potri.008G161901' => 'ptr', 'Potri.008G162000' => 'ptr', 'Potri.008G162400' => 'ptr', 'Potri.010G076900' => 'ptr', 'Pp3c12_9180' => 'ppa', 'Pp3c13_19770' => 'ppa', 'Pp3c14_22950' => 'ppa', 'Pp3c16_12160' => 'ppa', 'Pp3c27_7820' => 'ppa', 'Pp3c2_3490' => 'ppa', 'Pp3c3_23700' => 'ppa', 'Pp3c3_36520' => 'ppa', 'Pp3c4_15250' => 'ppa', 'PRCOL_00007002' => 'pco', 'Prupe.1G030600' => 'ppe', 'Prupe.1G030700' => 'ppe', 'Prupe.6G345200' => 'ppe', 'Prupe.8G230300' => 'ppe', 'Prupe.8G230500' => 'ppe', 'Psat3g059600' => 'psa', 'Psat5g200920' => 'psa', 'Psat6g056440' => 'psa', 'Psat6g057360' => 'psa', 'Psat6g134120' => 'psa', 'Psat6g134160' => 'psa', 'Psat7g008640' => 'psa', 'Psat7g185240' => 'psa', 'PSO017G1330' => 'pso', 'PSO063G6097' => 'pso', 'PSO170G0835' => 'pso', 'PSO170G2499' => 'pso', 'PSO210G5058' => 'pso', 'PSO210G6154' => 'pso', 'PSO585G0031' => 'pso', 'PSO832G0264' => 'pso', 'PSO832G4288' => 'pso', 'QL03p027355' => 'qlo', 'QL03p027430' => 'qlo', 'QL04p081380' => 'qlo', 'QL06p015642' => 'qlo', 'QL06p015650' => 'qlo', 'QL06p015686' => 'qlo', 'QL12p042927' => 'qlo', 'QL93p1863_0035' => 'qlo', 'RcHm_v2.0_Chr3g0450581' => 'rch', 'RcHm_v2.0_Chr4g0390371' => 'rch', 'RcHm_v2.0_Chr4g0390381' => 'rch', 'RcHm_v2.0_Chr4g0390491' => 'rch', 'RcHm_v2.0_Chr4g0390501' => 'rch', 'RcHm_v2.0_Chr6g0289231' => 'rch', 'Rhsim04G0190400' => 'rsi', 'Rhsim04G0190500' => 'rsi', 'Rhsim04G0190600' => 'rsi', 'Rhsim13G0031400' => 'rsi', 'Rhsim13G0165600' => 'rsi', 'RhsimUnG0114600' => 'rsi', 'RhsimUnG0114700' => 'rsi', 'Sabra02G0034800' => 'sbr', 'Sabra02G0035100' => 'sbr', 'Sabra05G0168600' => 'sbr', 'Sabra05G0168800' => 'sbr', 'Sabra08G0123700' => 'sbr', 'Sabra10G0031900' => 'sbr', 'Sabra13G0039000' => 'sbr', 'SalBow2G0782' => 'sbo', 'SalBow2G1403' => 'sbo', 'SalBow4G0074' => 'sbo', 'SalBow4G2635' => 'sbo', 'SalBow5G3010' => 'sbo', 'Sc05g0000870' => 'sci', 'Sc05g0000890' => 'sci', 'Sc13g0005000' => 'sci', 'Sc13g0005030' => 'sci', 'Sc19g0003790' => 'sci', 'Sc19g0003800' => 'sci', 'Sed0003467' => 'sed', 'Sed0009355' => 'sed', 'Sed0009894' => 'sed', 'Sed0011972' => 'sed', 'Sed0021483' => 'sed', 'Sed0021750' => 'sed', 'Sed0026279' => 'sed', 'SEGI_05312' => 'sgi', 'SEGI_10112' => 'sgi', 'SEGI_15835' => 'sgi', 'SEGI_30386' => 'sgi', 'SEGI_34122' => 'sgi', 'SEGI_35063' => 'sgi', 'SGA_v2.0_scaffold101G29794' => 'sas', 'SGA_v2.0_scaffold1G00573' => 'sas', 'SGA_v2.0_scaffold79G25637' => 'sas', 'SGA_v2.0_scaffold88G27283' => 'sas', 'SGA_v2.0_scaffold88G27285' => 'sas', 'SGA_v2.0_scaffold88G27331' => 'sas', 'SHI09937' => 'shi', 'SMO119G0302' => 'smo', 'SMO137G0231' => 'smo', 'SMO367G1151' => 'smo', 'Solyc02g082000.3' => 'sly', 'Solyc06g031670.3' => 'sly', 'Solyc06g053810.3' => 'sly', 'Solyc07g025457.1' => 'sly', 'Solyc08g059740.1' => 'sly', 'Solyc08g059750.3' => 'sly', 'Solyc09g083370.3' => 'sly', 'Solyc12g038950.3' => 'sly', 'Sopen02g026630' => 'spe', 'Sopen06g018930' => 'spe', 'Sopen06g018940' => 'spe', 'Sopen08g009460' => 'spe', 'Sopen09g032290' => 'spe', 'Sp1g03080' => 'spa', 'Sp1g03090' => 'spa', 'Sp1g05480' => 'spa', 'Sp2g07860' => 'spa', 'Sp2g08430' => 'spa', 'Sp2g08440' => 'spa', 'Sp2g26200' => 'spa', 'Sp4g13170' => 'spa', 'Sp6g33840' => 'spa', 'SpUn1204_0010' => 'spa', 'TAR365G0908' => 'tar', 'TAR381G1270' => 'tar', 'TAR381G1651' => 'tar', 'TAR625G1131' => 'tar', 'TAR633G0962' => 'tar', 'TAR633G1729' => 'tar', 'TAR633G1864' => 'tar', 'TAR636G0221' => 'tar', 'TAR636G0314' => 'tar', 'TAR636G3202' => 'tar', 'THA.LOC104800805' => 'tha', 'THA.LOC104801096' => 'tha', 'THA.LOC104801555' => 'tha', 'THA.LOC104808491' => 'tha', 'THA.LOC104808595' => 'tha', 'THA.LOC104815985' => 'tha', 'THA.LOC104822250' => 'tha', 'THA.LOC104826071' => 'tha', 'Thecc.01G265200' => 'tca', 'Thecc.01G265300' => 'tca', 'Thecc.01G265700' => 'tca', 'Thecc.03G109100' => 'tca', 'Thecc.04G245900' => 'tca', 'Thecc.04G246000' => 'tca', 'Thhalv10003334m.g' => 'esa', 'Thhalv10005508m.g' => 'esa', 'Thhalv10005643m.g' => 'esa', 'Thhalv10007316m.g' => 'esa', 'Thhalv10009006m.g' => 'esa', 'Thhalv10009309m.g' => 'esa', 'Thhalv10014917m.g' => 'esa', 'Thhalv10014919m.g' => 'esa', 'Thhalv10015393m.g' => 'esa', 'Thhalv10016515m.g' => 'esa', 'Thhalv10029242m.g' => 'esa', 'TPR.G16654' => 'tpr', 'TPR.G20589' => 'tpr', 'TPR.G23029' => 'tpr', 'TPR.G27731' => 'tpr', 'TPR.G28889' => 'tpr', 'TPR.G28899' => 'tpr', 'TPR.G30846' => 'tpr', 'TPR.G5452' => 'tpr', 'TPR.G5713' => 'tpr', 'TPR.G9046' => 'tpr', 'TPR.G9061' => 'tpr', 'TWI09G1075' => 'twi', 'TWI12G0806' => 'twi', 'TWI18G0108' => 'twi', 'TWI53G1361' => 'twi', 'TWI73G0185' => 'twi', 'TWI73G0427' => 'twi', 'unitig_37.g12001' => 'ugi', 'unitig_747.g21660' => 'ugi', 'unitig_748.g7232' => 'ugi', 'unitig_748.g7315' => 'ugi', 'unitig_85.g27262' => 'ugi', 'unitig_92.g28220' => 'ugi', 'vmacro02632' => 'vma', 'vmacro08410' => 'vma', 'vmacro08411' => 'vma', 'vmacro15407' => 'vma', 'VMungo0251G3619' => 'vmu', 'VMungo0720G1204' => 'vmu', 'VMungo0720G1918' => 'vmu', 'VMungo0720G2387' => 'vmu', 'VMungo0720G2961' => 'vmu', 'VMungo1215G2154' => 'vmu', 'VMungo1383G2411' => 'vmu', 'Zm00001eb051130' => 'zma', 'Zm00001eb116830' => 'zma', 'Zm00001eb116850' => 'zma', 'Zm00001eb151740' => 'zma', 'Zm00001eb292360' => 'zma', 'Zm00001eb301640' => 'zma' ) $gf_id = 'HOM05D000856' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000856' ) $data_identifier = 'HOM05D000856' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 13, 'ath' => (int) 10, 'atr' => (int) 1, 'acertr' => (int) 8, 'cqu' => (int) 6, 'bca' => (int) 21, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 11, 'car' => (int) 9, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 8, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 5, 'fan' => (int) 16, 'fve' => (int) 6, 'gma' => (int) 11, 'ghi' => (int) 19, 'gra' => (int) 9, 'vvi' => (int) 7, 'han' => (int) 17, 'cav' => (int) 5, 'hma' => (int) 2, 'vpl' => (int) 2, 'sun' => (int) 7, 'lal' => (int) 9, 'lja' => (int) 5, 'lonja' => (int) 9, 'lsa' => (int) 5, 'mes' => (int) 8, 'mpo' => (int) 3, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 10, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 15, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 9, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 9, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 6, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 5, 'spa' => (int) 10, 'tar' => (int) 10, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 11, 'tpr' => (int) 11, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 4, 'vmu' => (int) 7, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb301640' $species_info = array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ) $local_species = 'vvi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000856', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p00010' => 'bna', 'A03p04160' => 'bna', 'A03p17160' => 'bna', 'A04p23370' => 'bna', 'A05p14860' => 'bna', 'A08p37020' => 'bna', 'A09p08050' => 'bna', 'A09p66800' => 'bna', 'A09p67940' => 'bna', 'A10p02680' => 'bna', 'A10p05320' => 'bna', 'Aa31LG1G20560' => 'aar', 'Aa31LG1G20610' => 'aar', 'Aa31LG1G7810' => 'aar', 'Aa31LG5G3590' => 'aar', 'Aa31LG5G6140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3819' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4683' => 'aag', 'Actinidia04480' => 'ach', 'Actinidia05466' => 'ach', 'Actinidia08445' => 'ach', 'Actinidia21170' => 'ach', 'Actinidia24812' => 'ach', 'Actinidia24951' => 'ach', 'Actinidia40088' => 'ach', 'Ah.02g111660' => 'amhyb', 'Ah.11g048900' => 'amhyb', 'Ah.11g049910' => 'amhyb', 'AL1G13870' => 'aly', 'AL1G13880' => 'aly', 'AL1G16760' => 'aly', 'AL390U10020' => 'aly', 'AL4G25520' => 'aly', 'AL6G19890' => 'aly', 'AL6G19900' => 'aly', 'AL6G19910' => 'aly', 'AL8G40100' => 'aly', 'Aqoxy2G03562' => 'aox', 'Aqoxy5G00316' => 'aox', 'Aqoxy5G00926' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1628KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1H403S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2FU6SJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.882I6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8YRY2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YN1SN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AF70II' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZA8L1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F916KL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHRD8H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KTZ8QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S22EMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8M29T' => 'arhy', 'AT1G04270' => 'ath', 'AT1G04280' => 'ath', 'AT1G06750' => 'ath', 'AT1G33850' => 'ath', 'AT2G30630' => 'ath', 'AT5G09490' => 'ath', 'AT5G09500' => 'ath', 'AT5G09510' => 'ath', 'AT5G43640' => 'ath', 'AT5G63070' => 'ath', 'ATR0605G315' => 'atr', 'Atru.chr11.175' => 'acertr', 'Atru.chr11.653' => 'acertr', 'Atru.chr3.1616' => 'acertr', 'Atru.chr4.2230' => 'acertr', 'Atru.chr4.2232' => 'acertr', 'Atru.chr5.1598' => 'acertr', 'Atru.chr5.1600' => 'acertr', 'Atru.chr5.2188' => 'acertr', 'AUR62008326' => 'cqu', 'AUR62011922' => 'cqu', 'AUR62011924' => 'cqu', 'AUR62021771' => 'cqu', 'AUR62032237' => 'cqu', 'AUR62032240' => 'cqu', 'BcaB01g05572' => 'bca', 'BcaB02g10337' => 'bca', 'BcaB04g19944' => 'bca', 'BcaB05g21548' => 'bca', 'BcaB05g21549' => 'bca', 'BcaB05g23227' => 'bca', 'BcaB06g26256' => 'bca', 'BcaB06g26257' => 'bca', 'BcaB06g28379' => 'bca', 'BcaC02g11159' => 'bca', 'BcaC03g13258' => 'bca', 'BcaC03g13259' => 'bca', 'BcaC05g24456' => 'bca', 'BcaC05g24457' => 'bca', 'BcaC07g36922' => 'bca', 'BcaC07g36923' => 'bca', 'BcaC07g42050' => 'bca', 'BcaC07g42176' => 'bca', 'BcaC07g42195' => 'bca', 'BcaC07g42196' => 'bca', 'BcaNung06674' => 'bca', 'BolC2t06351H' => 'bol', 'BolC2t06352H' => 'bol', 'BolC3t12993H' => 'bol', 'BolC4t23525H' => 'bol', 'BolC4t27475H' => 'bol', 'BolC5t29025H' => 'bol', 'BolC5t29026H' => 'bol', 'BolC8t46898H' => 'bol', 'BolC8t46899H' => 'bol', 'BolC8t52630H' => 'bol', 'BolC8t52765H' => 'bol', 'BolC9t53824H' => 'bol', 'BraA03t09760Z' => 'bra', 'BraA03t10990Z' => 'bra', 'BraA05t20413Z' => 'bra', 'BraA08t35602Z' => 'bra', 'BraA09t36458Z' => 'bra', 'BraA09t42018Z' => 'bra', 'BraA09t42129Z' => 'bra', 'BraA10t42536Z' => 'bra', 'BraA10t42537Z' => 'bra', 'C01p10690' => 'bna', 'C02p03890' => 'bna', 'C02p03900' => 'bna', 'C03p04620' => 'bna', 'C04p19870' => 'bna', 'C04p59670' => 'bna', 'C05p02460' => 'bna', 'C05p02470' => 'bna', 'C08p00980' => 'bna', 'C08p00990' => 'bna', 'C08p51030' => 'bna', 'C08p52360' => 'bna', 'C09p09120' => 'bna', 'CAN.G19.15' => 'can', 'CAN.G251.10' => 'can', 'CAN.G251.9' => 'can', 'CAN.G398.24' => 'can', 'CAN.G410.32' => 'can', 'CAN.G881.2' => 'can', 'CANSAT01G3025' => 'cansat', 'CANSAT78G1211' => 'cansat', 'CANSAT78G1218' => 'cansat', 'CANSAT78G1521' => 'cansat', 'CANSAT78G1670' => 'cansat', 'CARHR003600' => 'chi', 'CARHR003610' => 'chi', 'CARHR006290' => 'chi', 'CARHR006430' => 'chi', 'CARHR124110' => 'chi', 'CARHR203870' => 'chi', 'CARHR203880' => 'chi', 'CARHR203890' => 'chi', 'CARHR276880' => 'chi', 'Carub.0001s0346' => 'cru', 'Carub.0001s0347' => 'cru', 'Carub.0001s0607' => 'cru', 'Carub.0003s2768' => 'cru', 'Carub.0003s2769' => 'cru', 'Carub.0004s1178' => 'cru', 'Carub.0006s0806' => 'cru', 'Carub.0006s0807' => 'cru', 'Carub.0006s0808' => 'cru', 'Carub.0008s0501' => 'cru', 'Carub.0008s2379' => 'cru', 'Ca_08655_v3' => 'car', 'Ca_08922_v3' => 'car', 'Ca_08923_v3' => 'car', 'Ca_09119_v3' => 'car', 'Ca_09703_v3' => 'car', 'Ca_09705_v3' => 'car', 'Ca_09835_v3' => 'car', 'Ca_26403_v3' => 'car', 'Ca_30719_v3' => 'car', 'CBR_g17958' => 'cbr', 'CBR_g40516' => 'cbr', 'Cc00_g05350' => 'ccan', 'Cc01_g18690' => 'ccan', 'Cc03_g04830' => 'ccan', 'Cc03_g04850' => 'ccan', 'CDE02G4469' => 'cde', 'CDE06G0883' => 'cde', 'CDE06G1295' => 'cde', 'CDE06G1390' => 'cde', 'CDE07G0584' => 'cde', 'CDE07G1084' => 'cde', 'CDE08G1259' => 'cde', 'Cfa002341' => 'cfa', 'Cfa024337' => 'cfa', 'Ciclev10004749m.g' => 'ccl', 'Ciclev10006127m.g' => 'ccl', 'Ciclev10019720m.g' => 'ccl', 'Ciclev10022652m.g' => 'ccl', 'CiPaw.01G190400' => 'cil', 'CiPaw.01G190500' => 'cil', 'CiPaw.02G116400' => 'cil', 'CiPaw.02G116500' => 'cil', 'CiPaw.04G183000' => 'cil', 'CiPaw.04G183300' => 'cil', 'ClCG05G004610' => 'cla', 'ClCG05G004620' => 'cla', 'ClCG06G006730' => 'cla', 'ClCG06G006740' => 'cla', 'ClCG11G003690' => 'cla', 'COL.COLO4_08276' => 'col', 'COL.COLO4_08277' => 'col', 'COL.COLO4_15787' => 'col', 'COL.COLO4_15789' => 'col', 'Cpa.g.c44815' => 'cpa', 'Cpa.g.sc52.144' => 'cpa', 'Cpa.g.sc58.46' => 'cpa', 'Cpa.g.sc58.47' => 'cpa', 'Cre08.g360900' => 'cre', 'CsaV3_2G013030' => 'csa', 'CsaV3_2G013050' => 'csa', 'CsaV3_2G015620' => 'csa', 'CsaV3_3G012590' => 'csa', 'CsaV3_3G012600' => 'csa', 'CSS0001641' => 'camsi', 'CSS0008310' => 'camsi', 'CSS0013011' => 'camsi', 'CSS0017147' => 'camsi', 'CSS0022970' => 'camsi', 'CSS0025655' => 'camsi', 'CSS0028665' => 'camsi', 'CSS0029117' => 'camsi', 'CSS0032024' => 'camsi', 'CSS0039681' => 'camsi', 'CSS0046516' => 'camsi', 'CSS0050307' => 'camsi', 'DCAR_005871' => 'dca', 'DCAR_007342' => 'dca', 'DCAR_024228' => 'dca', 'DCAR_027277' => 'dca', 'DCAR_030718' => 'dca', 'Dinv20287' => 'din', 'Dinv22461' => 'din', 'Dinv22464' => 'din', 'Dinv29912' => 'din', 'Dinv29913' => 'din', 'Dinv34580' => 'din', 'Dinv34582' => 'din', 'Dinv44632' => 'din', 'Duzib052G0266' => 'dzi', 'Duzib133G0907' => 'dzi', 'Duzib133G1034' => 'dzi', 'Duzib138G0207' => 'dzi', 'Duzib138G0491' => 'dzi', 'Duzib151G0812' => 'dzi', 'Duzib151G1166' => 'dzi', 'Duzib168G0192' => 'dzi', 'Duzib211G0077' => 'dzi', 'Duzib212G0429' => 'dzi', 'Duzib212G0472' => 'dzi', 'ECA233G2617' => 'eca', 'ECA236G4188' => 'eca', 'ECA240G0936' => 'eca', 'ECA240G1129' => 'eca', 'ECA247G0623' => 'eca', 'EL10Ac5g10451' => 'bvu', 'EL10Ac5g10453' => 'bvu', 'EL10Ac5g10894' => 'bvu', 'Eucgr.H00192' => 'egr', 'Eucgr.H00193' => 'egr', 'Eucgr.H00194' => 'egr', 'Eucgr.J01562' => 'egr', 'Eucgr.K03301' => 'egr', 'FAN02G0632' => 'fan', 'FAN05G5378' => 'fan', 'FAN09G3247' => 'fan', 'FAN12G0435' => 'fan', 'FAN12G2426' => 'fan', 'FAN14G1707' => 'fan', 'FAN14G4725' => 'fan', 'FAN15G2071' => 'fan', 'FAN17G3065' => 'fan', 'FAN19G1376' => 'fan', 'FAN20G0354' => 'fan', 'FAN20G2429' => 'fan', 'FAN20G2658' => 'fan', 'FAN24G2343' => 'fan', 'FAN27G2362' => 'fan', 'FAN28G1765' => 'fan', 'FvH4_1g16020' => 'fve', 'FvH4_2g04890' => 'fve', 'FvH4_2g22270' => 'fve', 'FvH4_4g02630' => 'fve', 'FvH4_4g02640' => 'fve', 'FvH4_6g02650' => 'fve', 'Glyma.02G140600' => 'gma', 'Glyma.03G159900' => 'gma', 'Glyma.05G234800' => 'gma', 'Glyma.07G269600' => 'gma', 'Glyma.08G042300' => 'gma', 'Glyma.10G033500' => 'gma', 'Glyma.10G185200' => 'gma', 'Glyma.17G004300' => 'gma', 'Glyma.19G161900' => 'gma', 'Glyma.20G205100' => 'gma', 'Glyma.20G205200' => 'gma', 'Gohir.A01G139101' => 'ghi', 'Gohir.A02G035600' => 'ghi', 'Gohir.A02G117901' => 'ghi', 'Gohir.A07G210100' => 'ghi', 'Gohir.A07G210200' => 'ghi', 'Gohir.A08G061100' => 'ghi', 'Gohir.A09G223000' => 'ghi', 'Gohir.A09G223100' => 'ghi', 'Gohir.A10G113900' => 'ghi', 'Gohir.A10G114000' => 'ghi', 'Gohir.D02G042300' => 'ghi', 'Gohir.D07G216100' => 'ghi', 'Gohir.D07G216200' => 'ghi', 'Gohir.D08G070400' => 'ghi', 'Gohir.D09G225000' => 'ghi', 'Gohir.D09G225100' => 'ghi', 'Gohir.D10G152300' => 'ghi', 'Gohir.D10G153200' => 'ghi', 'Gohir.D11G133701' => 'ghi', 'Gorai.004G074100' => 'gra', 'Gorai.005G046800' => 'gra', 'Gorai.006G246500' => 'gra', 'Gorai.006G246600' => 'gra', 'Gorai.007G142900' => 'gra', 'Gorai.011G171000' => 'gra', 'Gorai.011G171100' => 'gra', 'Gorai.013G104300' => 'gra', 'Gorai.013G104400' => 'gra', 'GSVIVG01000754001' => 'vvi', 'GSVIVG01000756001' => 'vvi', 'GSVIVG01010903001' => 'vvi', 'GSVIVG01017623001' => 'vvi', 'GSVIVG01018113001' => 'vvi', 'GSVIVG01018116001' => 'vvi', 'GSVIVG01018118001' => 'vvi', 'HanXRQChr03g0076211' => 'han', 'HanXRQChr03g0092431' => 'han', 'HanXRQChr03g0092441' => 'han', 'HanXRQChr03g0092591' => 'han', 'HanXRQChr03g0092671' => 'han', 'HanXRQChr03g0092681' => 'han', 'HanXRQChr03g0092691' => 'han', 'HanXRQChr03g0092701' => 'han', 'HanXRQChr03g0092721' => 'han', 'HanXRQChr03g0092731' => 'han', 'HanXRQChr04g0113681' => 'han', 'HanXRQChr10g0281371' => 'han', 'HanXRQChr11g0337141' => 'han', 'HanXRQChr13g0424521' => 'han', 'HanXRQChr13g0424531' => 'han', 'HanXRQChr13g0424541' => 'han', 'HanXRQChr16g0498221' => 'han', 'Haze_04377' => 'cav', 'Haze_11298' => 'cav', 'Haze_24547' => 'cav', 'Haze_24550' => 'cav', 'Haze_26587' => 'cav', 'Hma1.2p1_0650F.1_g195410' => 'hma', 'Hma1.2p1_0893F.1_g233470' => 'hma', 'HPP92_006508' => 'vpl', 'HPP92_024780' => 'vpl', 'Hund02688' => 'sun', 'Hund09380' => 'sun', 'Hund09381' => 'sun', 'Hund09832' => 'sun', 'Hund09833' => 'sun', 'Hund11351' => 'sun', 'Hund11513' => 'sun', 'Lalb_Chr06g0162591' => 'lal', 'Lalb_Chr06g0162601' => 'lal', 'Lalb_Chr06g0169321' => 'lal', 'Lalb_Chr09g0330951' => 'lal', 'Lalb_Chr16g0387631' => 'lal', 'Lalb_Chr21g0306241' => 'lal', 'Lalb_Chr25g0290051' => 'lal', 'Lalb_Chr25g0290061' => 'lal', 'Lalb_Chr25g0290071' => 'lal', 'Lj1g0003876' => 'lja', 'Lj1P1207T36' => 'lonja', 'Lj2C1156G12' => 'lonja', 'Lj3A793G39' => 'lonja', 'Lj3C580G2' => 'lonja', 'Lj3C780G2' => 'lonja', 'Lj3C780T4' => 'lonja', 'Lj3C793G9' => 'lonja', 'Lj4g0012960' => 'lja', 'Lj5g0021252' => 'lja', 'Lj5g0021484' => 'lja', 'Lj5g0024528' => 'lja', 'Lj6A399T12' => 'lonja', 'Lj6A656G65' => 'lonja', 'Lsat_1_v5_gn_3_125500' => 'lsa', 'Lsat_1_v5_gn_3_125540' => 'lsa', 'Lsat_1_v5_gn_5_72701' => 'lsa', 'Lsat_1_v5_gn_8_91560' => 'lsa', 'Lsat_1_v5_gn_9_9640' => 'lsa', 'Manes.01G200600' => 'mes', 'Manes.01G200700' => 'mes', 'Manes.03G168900' => 'mes', 'Manes.03G169000' => 'mes', 'Manes.05G085801' => 'mes', 'Manes.05G086200' => 'mes', 'Manes.15G036700' => 'mes', 'Manes.15G036900' => 'mes', 'Mapoly0004s0172' => 'mpo', 'Mapoly0023s0001' => 'mpo', 'Mapoly0142s0012' => 'mpo', 'MBI01_g32854_MAGBIO' => 'mbi', 'MBI11_g24427_MAGBIO' => 'mbi', 'MBI11_g47319_MAGBIO' => 'mbi', 'MCO01G433' => 'mco', 'MD00G1187800' => 'mdo', 'MD04G1226500' => 'mdo', 'MD05G1203900' => 'mdo', 'MD10G1191100' => 'mdo', 'MD12G1243500' => 'mdo', 'MD13G1207000' => 'mdo', 'MD13G1207100' => 'mdo', 'MD16G1208600' => 'mdo', 'Medtr1g050352' => 'mtr', 'Medtr1g070385' => 'mtr', 'Medtr1g070450' => 'mtr', 'Medtr1g075200' => 'mtr', 'Medtr1g075250' => 'mtr', 'Medtr1g075260' => 'mtr', 'Medtr1g475250' => 'mtr', 'Medtr4g075450' => 'mtr', 'Medtr7g096300' => 'mtr', 'Medtr8g105110' => 'mtr', 'MELO3C006470.2' => 'cme', 'MELO3C006471.2' => 'cme', 'MELO3C020772.2' => 'cme', 'MELO3C026780.2' => 'cme', 'MELO3C026781.2' => 'cme', 'Migut.D00390' => 'egut', 'Migut.G00435' => 'egut', 'Migut.G00436' => 'egut', 'Migut.G00718' => 'egut', 'MSTRG.21891' => 'ama', 'MSTRG.26910' => 'ama', 'MSTRG.4099' => 'ama', 'MSTRG.9925' => 'ama', 'Nitab4.5_0000165g0010' => 'nta', 'Nitab4.5_0000209g0180' => 'nta', 'Nitab4.5_0000244g0440' => 'nta', 'Nitab4.5_0000525g0220' => 'nta', 'Nitab4.5_0001597g0020' => 'nta', 'Nitab4.5_0001878g0040' => 'nta', 'Nitab4.5_0001878g0060' => 'nta', 'Nitab4.5_0002838g0100' => 'nta', 'Nitab4.5_0002838g0120' => 'nta', 'Nitab4.5_0004798g0030' => 'nta', 'Nitab4.5_0005420g0010' => 'nta', 'Nitab4.5_0005507g0010' => 'nta', 'Nitab4.5_0005574g0020' => 'nta', 'Nitab4.5_0005838g0010' => 'nta', 'Nitab4.5_0010580g0020' => 'nta', 'Nn1g02599' => 'nnu', 'Nn1g02608' => 'nnu', 'Nn3g17742' => 'nnu', 'Nn3g19534' => 'nnu', 'Nn3g19535' => 'nnu', 'Oeu008790.1' => 'oeu', 'Oeu008792.1' => 'oeu', 'Oeu032590.1' => 'oeu', 'Oeu035349.1' => 'oeu', 'Oeu049791.1' => 'oeu', 'Os01g0774500' => 'osa', 'Os03g0628800' => 'osa', 'Os03g0798600' => 'osa', 'Os05g0508800' => 'osa', 'Peaxi162Scf00036g02018' => 'pax', 'Peaxi162Scf00578g00032' => 'pax', 'Peaxi162Scf00578g00317' => 'pax', 'Peaxi162Scf00785g00114' => 'pax', 'Peaxi162Scf00813g00119' => 'pax', 'Peaxi162Scf00906g00227' => 'pax', 'PGR004G0875' => 'pgr', 'PGR004G2424' => 'pgr', 'PGR031G1239' => 'pgr', 'PGR031G2474' => 'pgr', 'PGR044G0423' => 'pgr', 'PGSC0003DMG400001128' => 'stu', 'PGSC0003DMG400007336' => 'stu', 'PGSC0003DMG400016318' => 'stu', 'PGSC0003DMG400016319' => 'stu', 'PGSC0003DMG400018074' => 'stu', 'Phvul.001G157700' => 'pvu', 'Phvul.002G148550' => 'pvu', 'Phvul.002G320200' => 'pvu', 'Phvul.003G089200' => 'pvu', 'Phvul.007G126000' => 'pvu', 'Phvul.007G126100' => 'pvu', 'Phvul.007G178000' => 'pvu', 'Phvul.007G178200' => 'pvu', 'Potri.002G043000' => 'ptr', 'Potri.002G043200' => 'ptr', 'Potri.003G123750' => 'ptr', 'Potri.005G055401' => 'ptr', 'Potri.005G219700' => 'ptr', 'Potri.005G220000' => 'ptr', 'Potri.008G161901' => 'ptr', 'Potri.008G162000' => 'ptr', 'Potri.008G162400' => 'ptr', 'Potri.010G076900' => 'ptr', 'Pp3c12_9180' => 'ppa', 'Pp3c13_19770' => 'ppa', 'Pp3c14_22950' => 'ppa', 'Pp3c16_12160' => 'ppa', 'Pp3c27_7820' => 'ppa', 'Pp3c2_3490' => 'ppa', 'Pp3c3_23700' => 'ppa', 'Pp3c3_36520' => 'ppa', 'Pp3c4_15250' => 'ppa', 'PRCOL_00007002' => 'pco', 'Prupe.1G030600' => 'ppe', 'Prupe.1G030700' => 'ppe', 'Prupe.6G345200' => 'ppe', 'Prupe.8G230300' => 'ppe', 'Prupe.8G230500' => 'ppe', 'Psat3g059600' => 'psa', 'Psat5g200920' => 'psa', 'Psat6g056440' => 'psa', 'Psat6g057360' => 'psa', 'Psat6g134120' => 'psa', 'Psat6g134160' => 'psa', 'Psat7g008640' => 'psa', 'Psat7g185240' => 'psa', 'PSO017G1330' => 'pso', 'PSO063G6097' => 'pso', 'PSO170G0835' => 'pso', 'PSO170G2499' => 'pso', 'PSO210G5058' => 'pso', 'PSO210G6154' => 'pso', 'PSO585G0031' => 'pso', 'PSO832G0264' => 'pso', 'PSO832G4288' => 'pso', 'QL03p027355' => 'qlo', 'QL03p027430' => 'qlo', 'QL04p081380' => 'qlo', 'QL06p015642' => 'qlo', 'QL06p015650' => 'qlo', 'QL06p015686' => 'qlo', 'QL12p042927' => 'qlo', 'QL93p1863_0035' => 'qlo', 'RcHm_v2.0_Chr3g0450581' => 'rch', 'RcHm_v2.0_Chr4g0390371' => 'rch', 'RcHm_v2.0_Chr4g0390381' => 'rch', 'RcHm_v2.0_Chr4g0390491' => 'rch', 'RcHm_v2.0_Chr4g0390501' => 'rch', 'RcHm_v2.0_Chr6g0289231' => 'rch', 'Rhsim04G0190400' => 'rsi', 'Rhsim04G0190500' => 'rsi', 'Rhsim04G0190600' => 'rsi', 'Rhsim13G0031400' => 'rsi', 'Rhsim13G0165600' => 'rsi', 'RhsimUnG0114600' => 'rsi', 'RhsimUnG0114700' => 'rsi', 'Sabra02G0034800' => 'sbr', 'Sabra02G0035100' => 'sbr', 'Sabra05G0168600' => 'sbr', 'Sabra05G0168800' => 'sbr', 'Sabra08G0123700' => 'sbr', 'Sabra10G0031900' => 'sbr', 'Sabra13G0039000' => 'sbr', 'SalBow2G0782' => 'sbo', 'SalBow2G1403' => 'sbo', 'SalBow4G0074' => 'sbo', 'SalBow4G2635' => 'sbo', 'SalBow5G3010' => 'sbo', 'Sc05g0000870' => 'sci', 'Sc05g0000890' => 'sci', 'Sc13g0005000' => 'sci', 'Sc13g0005030' => 'sci', 'Sc19g0003790' => 'sci', 'Sc19g0003800' => 'sci', 'Sed0003467' => 'sed', 'Sed0009355' => 'sed', 'Sed0009894' => 'sed', 'Sed0011972' => 'sed', 'Sed0021483' => 'sed', 'Sed0021750' => 'sed', 'Sed0026279' => 'sed', 'SEGI_05312' => 'sgi', 'SEGI_10112' => 'sgi', 'SEGI_15835' => 'sgi', 'SEGI_30386' => 'sgi', 'SEGI_34122' => 'sgi', 'SEGI_35063' => 'sgi', 'SGA_v2.0_scaffold101G29794' => 'sas', 'SGA_v2.0_scaffold1G00573' => 'sas', 'SGA_v2.0_scaffold79G25637' => 'sas', 'SGA_v2.0_scaffold88G27283' => 'sas', 'SGA_v2.0_scaffold88G27285' => 'sas', 'SGA_v2.0_scaffold88G27331' => 'sas', 'SHI09937' => 'shi', 'SMO119G0302' => 'smo', 'SMO137G0231' => 'smo', 'SMO367G1151' => 'smo', 'Solyc02g082000.3' => 'sly', 'Solyc06g031670.3' => 'sly', 'Solyc06g053810.3' => 'sly', 'Solyc07g025457.1' => 'sly', 'Solyc08g059740.1' => 'sly', 'Solyc08g059750.3' => 'sly', 'Solyc09g083370.3' => 'sly', 'Solyc12g038950.3' => 'sly', 'Sopen02g026630' => 'spe', 'Sopen06g018930' => 'spe', 'Sopen06g018940' => 'spe', 'Sopen08g009460' => 'spe', 'Sopen09g032290' => 'spe', 'Sp1g03080' => 'spa', 'Sp1g03090' => 'spa', 'Sp1g05480' => 'spa', 'Sp2g07860' => 'spa', 'Sp2g08430' => 'spa', 'Sp2g08440' => 'spa', 'Sp2g26200' => 'spa', 'Sp4g13170' => 'spa', 'Sp6g33840' => 'spa', 'SpUn1204_0010' => 'spa', 'TAR365G0908' => 'tar', 'TAR381G1270' => 'tar', 'TAR381G1651' => 'tar', 'TAR625G1131' => 'tar', 'TAR633G0962' => 'tar', 'TAR633G1729' => 'tar', 'TAR633G1864' => 'tar', 'TAR636G0221' => 'tar', 'TAR636G0314' => 'tar', 'TAR636G3202' => 'tar', 'THA.LOC104800805' => 'tha', 'THA.LOC104801096' => 'tha', 'THA.LOC104801555' => 'tha', 'THA.LOC104808491' => 'tha', 'THA.LOC104808595' => 'tha', 'THA.LOC104815985' => 'tha', 'THA.LOC104822250' => 'tha', 'THA.LOC104826071' => 'tha', 'Thecc.01G265200' => 'tca', 'Thecc.01G265300' => 'tca', 'Thecc.01G265700' => 'tca', 'Thecc.03G109100' => 'tca', 'Thecc.04G245900' => 'tca', 'Thecc.04G246000' => 'tca', 'Thhalv10003334m.g' => 'esa', 'Thhalv10005508m.g' => 'esa', 'Thhalv10005643m.g' => 'esa', 'Thhalv10007316m.g' => 'esa', 'Thhalv10009006m.g' => 'esa', 'Thhalv10009309m.g' => 'esa', 'Thhalv10014917m.g' => 'esa', 'Thhalv10014919m.g' => 'esa', 'Thhalv10015393m.g' => 'esa', 'Thhalv10016515m.g' => 'esa', 'Thhalv10029242m.g' => 'esa', 'TPR.G16654' => 'tpr', 'TPR.G20589' => 'tpr', 'TPR.G23029' => 'tpr', 'TPR.G27731' => 'tpr', 'TPR.G28889' => 'tpr', 'TPR.G28899' => 'tpr', 'TPR.G30846' => 'tpr', 'TPR.G5452' => 'tpr', 'TPR.G5713' => 'tpr', 'TPR.G9046' => 'tpr', 'TPR.G9061' => 'tpr', 'TWI09G1075' => 'twi', 'TWI12G0806' => 'twi', 'TWI18G0108' => 'twi', 'TWI53G1361' => 'twi', 'TWI73G0185' => 'twi', 'TWI73G0427' => 'twi', 'unitig_37.g12001' => 'ugi', 'unitig_747.g21660' => 'ugi', 'unitig_748.g7232' => 'ugi', 'unitig_748.g7315' => 'ugi', 'unitig_85.g27262' => 'ugi', 'unitig_92.g28220' => 'ugi', 'vmacro02632' => 'vma', 'vmacro08410' => 'vma', 'vmacro08411' => 'vma', 'vmacro15407' => 'vma', 'VMungo0251G3619' => 'vmu', 'VMungo0720G1204' => 'vmu', 'VMungo0720G1918' => 'vmu', 'VMungo0720G2387' => 'vmu', 'VMungo0720G2961' => 'vmu', 'VMungo1215G2154' => 'vmu', 'VMungo1383G2411' => 'vmu', 'Zm00001eb051130' => 'zma', 'Zm00001eb116830' => 'zma', 'Zm00001eb116850' => 'zma', 'Zm00001eb151740' => 'zma', 'Zm00001eb292360' => 'zma', 'Zm00001eb301640' => 'zma' ), 'gf_id' => 'HOM05D000856', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000856' ), 'data_identifier' => 'HOM05D000856', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000856', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p00010' => 'bna', 'A03p04160' => 'bna', 'A03p17160' => 'bna', 'A04p23370' => 'bna', 'A05p14860' => 'bna', 'A08p37020' => 'bna', 'A09p08050' => 'bna', 'A09p66800' => 'bna', 'A09p67940' => 'bna', 'A10p02680' => 'bna', 'A10p05320' => 'bna', 'Aa31LG1G20560' => 'aar', 'Aa31LG1G20610' => 'aar', 'Aa31LG1G7810' => 'aar', 'Aa31LG5G3590' => 'aar', 'Aa31LG5G6140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3819' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4683' => 'aag', 'Actinidia04480' => 'ach', 'Actinidia05466' => 'ach', 'Actinidia08445' => 'ach', 'Actinidia21170' => 'ach', 'Actinidia24812' => 'ach', 'Actinidia24951' => 'ach', 'Actinidia40088' => 'ach', 'Ah.02g111660' => 'amhyb', 'Ah.11g048900' => 'amhyb', 'Ah.11g049910' => 'amhyb', 'AL1G13870' => 'aly', 'AL1G13880' => 'aly', 'AL1G16760' => 'aly', 'AL390U10020' => 'aly', 'AL4G25520' => 'aly', 'AL6G19890' => 'aly', 'AL6G19900' => 'aly', 'AL6G19910' => 'aly', 'AL8G40100' => 'aly', 'Aqoxy2G03562' => 'aox', 'Aqoxy5G00316' => 'aox', 'Aqoxy5G00926' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1628KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1H403S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2FU6SJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.882I6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8YRY2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YN1SN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AF70II' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZA8L1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F916KL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHRD8H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KTZ8QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S22EMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8M29T' => 'arhy', 'AT1G04270' => 'ath', 'AT1G04280' => 'ath', 'AT1G06750' => 'ath', 'AT1G33850' => 'ath', 'AT2G30630' => 'ath', 'AT5G09490' => 'ath', 'AT5G09500' => 'ath', 'AT5G09510' => 'ath', 'AT5G43640' => 'ath', 'AT5G63070' => 'ath', 'ATR0605G315' => 'atr', 'Atru.chr11.175' => 'acertr', 'Atru.chr11.653' => 'acertr', 'Atru.chr3.1616' => 'acertr', 'Atru.chr4.2230' => 'acertr', 'Atru.chr4.2232' => 'acertr', 'Atru.chr5.1598' => 'acertr', 'Atru.chr5.1600' => 'acertr', 'Atru.chr5.2188' => 'acertr', 'AUR62008326' => 'cqu', 'AUR62011922' => 'cqu', 'AUR62011924' => 'cqu', 'AUR62021771' => 'cqu', 'AUR62032237' => 'cqu', 'AUR62032240' => 'cqu', 'BcaB01g05572' => 'bca', 'BcaB02g10337' => 'bca', 'BcaB04g19944' => 'bca', 'BcaB05g21548' => 'bca', 'BcaB05g21549' => 'bca', 'BcaB05g23227' => 'bca', 'BcaB06g26256' => 'bca', 'BcaB06g26257' => 'bca', 'BcaB06g28379' => 'bca', 'BcaC02g11159' => 'bca', 'BcaC03g13258' => 'bca', 'BcaC03g13259' => 'bca', 'BcaC05g24456' => 'bca', 'BcaC05g24457' => 'bca', 'BcaC07g36922' => 'bca', 'BcaC07g36923' => 'bca', 'BcaC07g42050' => 'bca', 'BcaC07g42176' => 'bca', 'BcaC07g42195' => 'bca', 'BcaC07g42196' => 'bca', 'BcaNung06674' => 'bca', 'BolC2t06351H' => 'bol', 'BolC2t06352H' => 'bol', 'BolC3t12993H' => 'bol', 'BolC4t23525H' => 'bol', 'BolC4t27475H' => 'bol', 'BolC5t29025H' => 'bol', 'BolC5t29026H' => 'bol', 'BolC8t46898H' => 'bol', 'BolC8t46899H' => 'bol', 'BolC8t52630H' => 'bol', 'BolC8t52765H' => 'bol', 'BolC9t53824H' => 'bol', 'BraA03t09760Z' => 'bra', 'BraA03t10990Z' => 'bra', 'BraA05t20413Z' => 'bra', 'BraA08t35602Z' => 'bra', 'BraA09t36458Z' => 'bra', 'BraA09t42018Z' => 'bra', 'BraA09t42129Z' => 'bra', 'BraA10t42536Z' => 'bra', 'BraA10t42537Z' => 'bra', 'C01p10690' => 'bna', 'C02p03890' => 'bna', 'C02p03900' => 'bna', 'C03p04620' => 'bna', 'C04p19870' => 'bna', 'C04p59670' => 'bna', 'C05p02460' => 'bna', 'C05p02470' => 'bna', 'C08p00980' => 'bna', 'C08p00990' => 'bna', 'C08p51030' => 'bna', 'C08p52360' => 'bna', 'C09p09120' => 'bna', 'CAN.G19.15' => 'can', 'CAN.G251.10' => 'can', 'CAN.G251.9' => 'can', 'CAN.G398.24' => 'can', 'CAN.G410.32' => 'can', 'CAN.G881.2' => 'can', 'CANSAT01G3025' => 'cansat', 'CANSAT78G1211' => 'cansat', 'CANSAT78G1218' => 'cansat', 'CANSAT78G1521' => 'cansat', 'CANSAT78G1670' => 'cansat', 'CARHR003600' => 'chi', 'CARHR003610' => 'chi', 'CARHR006290' => 'chi', 'CARHR006430' => 'chi', 'CARHR124110' => 'chi', 'CARHR203870' => 'chi', 'CARHR203880' => 'chi', 'CARHR203890' => 'chi', 'CARHR276880' => 'chi', 'Carub.0001s0346' => 'cru', 'Carub.0001s0347' => 'cru', 'Carub.0001s0607' => 'cru', 'Carub.0003s2768' => 'cru', 'Carub.0003s2769' => 'cru', 'Carub.0004s1178' => 'cru', 'Carub.0006s0806' => 'cru', 'Carub.0006s0807' => 'cru', 'Carub.0006s0808' => 'cru', 'Carub.0008s0501' => 'cru', 'Carub.0008s2379' => 'cru', 'Ca_08655_v3' => 'car', 'Ca_08922_v3' => 'car', 'Ca_08923_v3' => 'car', 'Ca_09119_v3' => 'car', 'Ca_09703_v3' => 'car', 'Ca_09705_v3' => 'car', 'Ca_09835_v3' => 'car', 'Ca_26403_v3' => 'car', 'Ca_30719_v3' => 'car', 'CBR_g17958' => 'cbr', 'CBR_g40516' => 'cbr', 'Cc00_g05350' => 'ccan', 'Cc01_g18690' => 'ccan', 'Cc03_g04830' => 'ccan', 'Cc03_g04850' => 'ccan', 'CDE02G4469' => 'cde', 'CDE06G0883' => 'cde', 'CDE06G1295' => 'cde', 'CDE06G1390' => 'cde', 'CDE07G0584' => 'cde', 'CDE07G1084' => 'cde', 'CDE08G1259' => 'cde', 'Cfa002341' => 'cfa', 'Cfa024337' => 'cfa', 'Ciclev10004749m.g' => 'ccl', 'Ciclev10006127m.g' => 'ccl', 'Ciclev10019720m.g' => 'ccl', 'Ciclev10022652m.g' => 'ccl', 'CiPaw.01G190400' => 'cil', 'CiPaw.01G190500' => 'cil', 'CiPaw.02G116400' => 'cil', 'CiPaw.02G116500' => 'cil', 'CiPaw.04G183000' => 'cil', 'CiPaw.04G183300' => 'cil', 'ClCG05G004610' => 'cla', 'ClCG05G004620' => 'cla', 'ClCG06G006730' => 'cla', 'ClCG06G006740' => 'cla', 'ClCG11G003690' => 'cla', 'COL.COLO4_08276' => 'col', 'COL.COLO4_08277' => 'col', 'COL.COLO4_15787' => 'col', 'COL.COLO4_15789' => 'col', 'Cpa.g.c44815' => 'cpa', 'Cpa.g.sc52.144' => 'cpa', 'Cpa.g.sc58.46' => 'cpa', 'Cpa.g.sc58.47' => 'cpa', 'Cre08.g360900' => 'cre', 'CsaV3_2G013030' => 'csa', 'CsaV3_2G013050' => 'csa', 'CsaV3_2G015620' => 'csa', 'CsaV3_3G012590' => 'csa', 'CsaV3_3G012600' => 'csa', 'CSS0001641' => 'camsi', 'CSS0008310' => 'camsi', 'CSS0013011' => 'camsi', 'CSS0017147' => 'camsi', 'CSS0022970' => 'camsi', 'CSS0025655' => 'camsi', 'CSS0028665' => 'camsi', 'CSS0029117' => 'camsi', 'CSS0032024' => 'camsi', 'CSS0039681' => 'camsi', 'CSS0046516' => 'camsi', 'CSS0050307' => 'camsi', 'DCAR_005871' => 'dca', 'DCAR_007342' => 'dca', 'DCAR_024228' => 'dca', 'DCAR_027277' => 'dca', 'DCAR_030718' => 'dca', 'Dinv20287' => 'din', 'Dinv22461' => 'din', 'Dinv22464' => 'din', 'Dinv29912' => 'din', 'Dinv29913' => 'din', 'Dinv34580' => 'din', 'Dinv34582' => 'din', 'Dinv44632' => 'din', 'Duzib052G0266' => 'dzi', 'Duzib133G0907' => 'dzi', 'Duzib133G1034' => 'dzi', 'Duzib138G0207' => 'dzi', 'Duzib138G0491' => 'dzi', 'Duzib151G0812' => 'dzi', 'Duzib151G1166' => 'dzi', 'Duzib168G0192' => 'dzi', 'Duzib211G0077' => 'dzi', 'Duzib212G0429' => 'dzi', 'Duzib212G0472' => 'dzi', 'ECA233G2617' => 'eca', 'ECA236G4188' => 'eca', 'ECA240G0936' => 'eca', 'ECA240G1129' => 'eca', 'ECA247G0623' => 'eca', 'EL10Ac5g10451' => 'bvu', 'EL10Ac5g10453' => 'bvu', 'EL10Ac5g10894' => 'bvu', 'Eucgr.H00192' => 'egr', 'Eucgr.H00193' => 'egr', 'Eucgr.H00194' => 'egr', 'Eucgr.J01562' => 'egr', 'Eucgr.K03301' => 'egr', 'FAN02G0632' => 'fan', 'FAN05G5378' => 'fan', 'FAN09G3247' => 'fan', 'FAN12G0435' => 'fan', 'FAN12G2426' => 'fan', 'FAN14G1707' => 'fan', 'FAN14G4725' => 'fan', 'FAN15G2071' => 'fan', 'FAN17G3065' => 'fan', 'FAN19G1376' => 'fan', 'FAN20G0354' => 'fan', 'FAN20G2429' => 'fan', 'FAN20G2658' => 'fan', 'FAN24G2343' => 'fan', 'FAN27G2362' => 'fan', 'FAN28G1765' => 'fan', 'FvH4_1g16020' => 'fve', 'FvH4_2g04890' => 'fve', 'FvH4_2g22270' => 'fve', 'FvH4_4g02630' => 'fve', 'FvH4_4g02640' => 'fve', 'FvH4_6g02650' => 'fve', 'Glyma.02G140600' => 'gma', 'Glyma.03G159900' => 'gma', 'Glyma.05G234800' => 'gma', 'Glyma.07G269600' => 'gma', 'Glyma.08G042300' => 'gma', 'Glyma.10G033500' => 'gma', 'Glyma.10G185200' => 'gma', 'Glyma.17G004300' => 'gma', 'Glyma.19G161900' => 'gma', 'Glyma.20G205100' => 'gma', 'Glyma.20G205200' => 'gma', 'Gohir.A01G139101' => 'ghi', 'Gohir.A02G035600' => 'ghi', 'Gohir.A02G117901' => 'ghi', 'Gohir.A07G210100' => 'ghi', 'Gohir.A07G210200' => 'ghi', 'Gohir.A08G061100' => 'ghi', 'Gohir.A09G223000' => 'ghi', 'Gohir.A09G223100' => 'ghi', 'Gohir.A10G113900' => 'ghi', 'Gohir.A10G114000' => 'ghi', 'Gohir.D02G042300' => 'ghi', 'Gohir.D07G216100' => 'ghi', 'Gohir.D07G216200' => 'ghi', 'Gohir.D08G070400' => 'ghi', 'Gohir.D09G225000' => 'ghi', 'Gohir.D09G225100' => 'ghi', 'Gohir.D10G152300' => 'ghi', 'Gohir.D10G153200' => 'ghi', 'Gohir.D11G133701' => 'ghi', 'Gorai.004G074100' => 'gra', 'Gorai.005G046800' => 'gra', 'Gorai.006G246500' => 'gra', 'Gorai.006G246600' => 'gra', 'Gorai.007G142900' => 'gra', 'Gorai.011G171000' => 'gra', 'Gorai.011G171100' => 'gra', 'Gorai.013G104300' => 'gra', 'Gorai.013G104400' => 'gra', 'GSVIVG01000754001' => 'vvi', 'GSVIVG01000756001' => 'vvi', 'GSVIVG01010903001' => 'vvi', 'GSVIVG01017623001' => 'vvi', 'GSVIVG01018113001' => 'vvi', 'GSVIVG01018116001' => 'vvi', 'GSVIVG01018118001' => 'vvi', 'HanXRQChr03g0076211' => 'han', 'HanXRQChr03g0092431' => 'han', 'HanXRQChr03g0092441' => 'han', 'HanXRQChr03g0092591' => 'han', 'HanXRQChr03g0092671' => 'han', 'HanXRQChr03g0092681' => 'han', 'HanXRQChr03g0092691' => 'han', 'HanXRQChr03g0092701' => 'han', 'HanXRQChr03g0092721' => 'han', 'HanXRQChr03g0092731' => 'han', 'HanXRQChr04g0113681' => 'han', 'HanXRQChr10g0281371' => 'han', 'HanXRQChr11g0337141' => 'han', 'HanXRQChr13g0424521' => 'han', 'HanXRQChr13g0424531' => 'han', 'HanXRQChr13g0424541' => 'han', 'HanXRQChr16g0498221' => 'han', 'Haze_04377' => 'cav', 'Haze_11298' => 'cav', 'Haze_24547' => 'cav', 'Haze_24550' => 'cav', 'Haze_26587' => 'cav', 'Hma1.2p1_0650F.1_g195410' => 'hma', 'Hma1.2p1_0893F.1_g233470' => 'hma', 'HPP92_006508' => 'vpl', 'HPP92_024780' => 'vpl', 'Hund02688' => 'sun', 'Hund09380' => 'sun', 'Hund09381' => 'sun', 'Hund09832' => 'sun', 'Hund09833' => 'sun', 'Hund11351' => 'sun', 'Hund11513' => 'sun', 'Lalb_Chr06g0162591' => 'lal', 'Lalb_Chr06g0162601' => 'lal', 'Lalb_Chr06g0169321' => 'lal', 'Lalb_Chr09g0330951' => 'lal', 'Lalb_Chr16g0387631' => 'lal', 'Lalb_Chr21g0306241' => 'lal', 'Lalb_Chr25g0290051' => 'lal', 'Lalb_Chr25g0290061' => 'lal', 'Lalb_Chr25g0290071' => 'lal', 'Lj1g0003876' => 'lja', 'Lj1P1207T36' => 'lonja', 'Lj2C1156G12' => 'lonja', 'Lj3A793G39' => 'lonja', 'Lj3C580G2' => 'lonja', 'Lj3C780G2' => 'lonja', 'Lj3C780T4' => 'lonja', 'Lj3C793G9' => 'lonja', 'Lj4g0012960' => 'lja', 'Lj5g0021252' => 'lja', 'Lj5g0021484' => 'lja', 'Lj5g0024528' => 'lja', 'Lj6A399T12' => 'lonja', 'Lj6A656G65' => 'lonja', 'Lsat_1_v5_gn_3_125500' => 'lsa', 'Lsat_1_v5_gn_3_125540' => 'lsa', 'Lsat_1_v5_gn_5_72701' => 'lsa', 'Lsat_1_v5_gn_8_91560' => 'lsa', 'Lsat_1_v5_gn_9_9640' => 'lsa', 'Manes.01G200600' => 'mes', 'Manes.01G200700' => 'mes', 'Manes.03G168900' => 'mes', 'Manes.03G169000' => 'mes', 'Manes.05G085801' => 'mes', 'Manes.05G086200' => 'mes', 'Manes.15G036700' => 'mes', 'Manes.15G036900' => 'mes', 'Mapoly0004s0172' => 'mpo', 'Mapoly0023s0001' => 'mpo', 'Mapoly0142s0012' => 'mpo', 'MBI01_g32854_MAGBIO' => 'mbi', 'MBI11_g24427_MAGBIO' => 'mbi', 'MBI11_g47319_MAGBIO' => 'mbi', 'MCO01G433' => 'mco', 'MD00G1187800' => 'mdo', 'MD04G1226500' => 'mdo', 'MD05G1203900' => 'mdo', 'MD10G1191100' => 'mdo', 'MD12G1243500' => 'mdo', 'MD13G1207000' => 'mdo', 'MD13G1207100' => 'mdo', 'MD16G1208600' => 'mdo', 'Medtr1g050352' => 'mtr', 'Medtr1g070385' => 'mtr', 'Medtr1g070450' => 'mtr', 'Medtr1g075200' => 'mtr', 'Medtr1g075250' => 'mtr', 'Medtr1g075260' => 'mtr', 'Medtr1g475250' => 'mtr', 'Medtr4g075450' => 'mtr', 'Medtr7g096300' => 'mtr', 'Medtr8g105110' => 'mtr', 'MELO3C006470.2' => 'cme', 'MELO3C006471.2' => 'cme', 'MELO3C020772.2' => 'cme', 'MELO3C026780.2' => 'cme', 'MELO3C026781.2' => 'cme', 'Migut.D00390' => 'egut', 'Migut.G00435' => 'egut', 'Migut.G00436' => 'egut', 'Migut.G00718' => 'egut', 'MSTRG.21891' => 'ama', 'MSTRG.26910' => 'ama', 'MSTRG.4099' => 'ama', 'MSTRG.9925' => 'ama', 'Nitab4.5_0000165g0010' => 'nta', 'Nitab4.5_0000209g0180' => 'nta', 'Nitab4.5_0000244g0440' => 'nta', 'Nitab4.5_0000525g0220' => 'nta', 'Nitab4.5_0001597g0020' => 'nta', 'Nitab4.5_0001878g0040' => 'nta', 'Nitab4.5_0001878g0060' => 'nta', 'Nitab4.5_0002838g0100' => 'nta', 'Nitab4.5_0002838g0120' => 'nta', 'Nitab4.5_0004798g0030' => 'nta', 'Nitab4.5_0005420g0010' => 'nta', 'Nitab4.5_0005507g0010' => 'nta', 'Nitab4.5_0005574g0020' => 'nta', 'Nitab4.5_0005838g0010' => 'nta', 'Nitab4.5_0010580g0020' => 'nta', 'Nn1g02599' => 'nnu', 'Nn1g02608' => 'nnu', 'Nn3g17742' => 'nnu', 'Nn3g19534' => 'nnu', 'Nn3g19535' => 'nnu', 'Oeu008790.1' => 'oeu', 'Oeu008792.1' => 'oeu', 'Oeu032590.1' => 'oeu', 'Oeu035349.1' => 'oeu', 'Oeu049791.1' => 'oeu', 'Os01g0774500' => 'osa', 'Os03g0628800' => 'osa', 'Os03g0798600' => 'osa', 'Os05g0508800' => 'osa', 'Peaxi162Scf00036g02018' => 'pax', 'Peaxi162Scf00578g00032' => 'pax', 'Peaxi162Scf00578g00317' => 'pax', 'Peaxi162Scf00785g00114' => 'pax', 'Peaxi162Scf00813g00119' => 'pax', 'Peaxi162Scf00906g00227' => 'pax', 'PGR004G0875' => 'pgr', 'PGR004G2424' => 'pgr', 'PGR031G1239' => 'pgr', 'PGR031G2474' => 'pgr', 'PGR044G0423' => 'pgr', 'PGSC0003DMG400001128' => 'stu', 'PGSC0003DMG400007336' => 'stu', 'PGSC0003DMG400016318' => 'stu', 'PGSC0003DMG400016319' => 'stu', 'PGSC0003DMG400018074' => 'stu', 'Phvul.001G157700' => 'pvu', 'Phvul.002G148550' => 'pvu', 'Phvul.002G320200' => 'pvu', 'Phvul.003G089200' => 'pvu', 'Phvul.007G126000' => 'pvu', 'Phvul.007G126100' => 'pvu', 'Phvul.007G178000' => 'pvu', 'Phvul.007G178200' => 'pvu', 'Potri.002G043000' => 'ptr', 'Potri.002G043200' => 'ptr', 'Potri.003G123750' => 'ptr', 'Potri.005G055401' => 'ptr', 'Potri.005G219700' => 'ptr', 'Potri.005G220000' => 'ptr', 'Potri.008G161901' => 'ptr', 'Potri.008G162000' => 'ptr', 'Potri.008G162400' => 'ptr', 'Potri.010G076900' => 'ptr', 'Pp3c12_9180' => 'ppa', 'Pp3c13_19770' => 'ppa', 'Pp3c14_22950' => 'ppa', 'Pp3c16_12160' => 'ppa', 'Pp3c27_7820' => 'ppa', 'Pp3c2_3490' => 'ppa', 'Pp3c3_23700' => 'ppa', 'Pp3c3_36520' => 'ppa', 'Pp3c4_15250' => 'ppa', 'PRCOL_00007002' => 'pco', 'Prupe.1G030600' => 'ppe', 'Prupe.1G030700' => 'ppe', 'Prupe.6G345200' => 'ppe', 'Prupe.8G230300' => 'ppe', 'Prupe.8G230500' => 'ppe', 'Psat3g059600' => 'psa', 'Psat5g200920' => 'psa', 'Psat6g056440' => 'psa', 'Psat6g057360' => 'psa', 'Psat6g134120' => 'psa', 'Psat6g134160' => 'psa', 'Psat7g008640' => 'psa', 'Psat7g185240' => 'psa', 'PSO017G1330' => 'pso', 'PSO063G6097' => 'pso', 'PSO170G0835' => 'pso', 'PSO170G2499' => 'pso', 'PSO210G5058' => 'pso', 'PSO210G6154' => 'pso', 'PSO585G0031' => 'pso', 'PSO832G0264' => 'pso', 'PSO832G4288' => 'pso', 'QL03p027355' => 'qlo', 'QL03p027430' => 'qlo', 'QL04p081380' => 'qlo', 'QL06p015642' => 'qlo', 'QL06p015650' => 'qlo', 'QL06p015686' => 'qlo', 'QL12p042927' => 'qlo', 'QL93p1863_0035' => 'qlo', 'RcHm_v2.0_Chr3g0450581' => 'rch', 'RcHm_v2.0_Chr4g0390371' => 'rch', 'RcHm_v2.0_Chr4g0390381' => 'rch', 'RcHm_v2.0_Chr4g0390491' => 'rch', 'RcHm_v2.0_Chr4g0390501' => 'rch', 'RcHm_v2.0_Chr6g0289231' => 'rch', 'Rhsim04G0190400' => 'rsi', 'Rhsim04G0190500' => 'rsi', 'Rhsim04G0190600' => 'rsi', 'Rhsim13G0031400' => 'rsi', 'Rhsim13G0165600' => 'rsi', 'RhsimUnG0114600' => 'rsi', 'RhsimUnG0114700' => 'rsi', 'Sabra02G0034800' => 'sbr', 'Sabra02G0035100' => 'sbr', 'Sabra05G0168600' => 'sbr', 'Sabra05G0168800' => 'sbr', 'Sabra08G0123700' => 'sbr', 'Sabra10G0031900' => 'sbr', 'Sabra13G0039000' => 'sbr', 'SalBow2G0782' => 'sbo', 'SalBow2G1403' => 'sbo', 'SalBow4G0074' => 'sbo', 'SalBow4G2635' => 'sbo', 'SalBow5G3010' => 'sbo', 'Sc05g0000870' => 'sci', 'Sc05g0000890' => 'sci', 'Sc13g0005000' => 'sci', 'Sc13g0005030' => 'sci', 'Sc19g0003790' => 'sci', 'Sc19g0003800' => 'sci', 'Sed0003467' => 'sed', 'Sed0009355' => 'sed', 'Sed0009894' => 'sed', 'Sed0011972' => 'sed', 'Sed0021483' => 'sed', 'Sed0021750' => 'sed', 'Sed0026279' => 'sed', 'SEGI_05312' => 'sgi', 'SEGI_10112' => 'sgi', 'SEGI_15835' => 'sgi', 'SEGI_30386' => 'sgi', 'SEGI_34122' => 'sgi', 'SEGI_35063' => 'sgi', 'SGA_v2.0_scaffold101G29794' => 'sas', 'SGA_v2.0_scaffold1G00573' => 'sas', 'SGA_v2.0_scaffold79G25637' => 'sas', 'SGA_v2.0_scaffold88G27283' => 'sas', 'SGA_v2.0_scaffold88G27285' => 'sas', 'SGA_v2.0_scaffold88G27331' => 'sas', 'SHI09937' => 'shi', 'SMO119G0302' => 'smo', 'SMO137G0231' => 'smo', 'SMO367G1151' => 'smo', 'Solyc02g082000.3' => 'sly', 'Solyc06g031670.3' => 'sly', 'Solyc06g053810.3' => 'sly', 'Solyc07g025457.1' => 'sly', 'Solyc08g059740.1' => 'sly', 'Solyc08g059750.3' => 'sly', 'Solyc09g083370.3' => 'sly', 'Solyc12g038950.3' => 'sly', 'Sopen02g026630' => 'spe', 'Sopen06g018930' => 'spe', 'Sopen06g018940' => 'spe', 'Sopen08g009460' => 'spe', 'Sopen09g032290' => 'spe', 'Sp1g03080' => 'spa', 'Sp1g03090' => 'spa', 'Sp1g05480' => 'spa', 'Sp2g07860' => 'spa', 'Sp2g08430' => 'spa', 'Sp2g08440' => 'spa', 'Sp2g26200' => 'spa', 'Sp4g13170' => 'spa', 'Sp6g33840' => 'spa', 'SpUn1204_0010' => 'spa', 'TAR365G0908' => 'tar', 'TAR381G1270' => 'tar', 'TAR381G1651' => 'tar', 'TAR625G1131' => 'tar', 'TAR633G0962' => 'tar', 'TAR633G1729' => 'tar', 'TAR633G1864' => 'tar', 'TAR636G0221' => 'tar', 'TAR636G0314' => 'tar', 'TAR636G3202' => 'tar', 'THA.LOC104800805' => 'tha', 'THA.LOC104801096' => 'tha', 'THA.LOC104801555' => 'tha', 'THA.LOC104808491' => 'tha', 'THA.LOC104808595' => 'tha', 'THA.LOC104815985' => 'tha', 'THA.LOC104822250' => 'tha', 'THA.LOC104826071' => 'tha', 'Thecc.01G265200' => 'tca', 'Thecc.01G265300' => 'tca', 'Thecc.01G265700' => 'tca', 'Thecc.03G109100' => 'tca', 'Thecc.04G245900' => 'tca', 'Thecc.04G246000' => 'tca', 'Thhalv10003334m.g' => 'esa', 'Thhalv10005508m.g' => 'esa', 'Thhalv10005643m.g' => 'esa', 'Thhalv10007316m.g' => 'esa', 'Thhalv10009006m.g' => 'esa', 'Thhalv10009309m.g' => 'esa', 'Thhalv10014917m.g' => 'esa', 'Thhalv10014919m.g' => 'esa', 'Thhalv10015393m.g' => 'esa', 'Thhalv10016515m.g' => 'esa', 'Thhalv10029242m.g' => 'esa', 'TPR.G16654' => 'tpr', 'TPR.G20589' => 'tpr', 'TPR.G23029' => 'tpr', 'TPR.G27731' => 'tpr', 'TPR.G28889' => 'tpr', 'TPR.G28899' => 'tpr', 'TPR.G30846' => 'tpr', 'TPR.G5452' => 'tpr', 'TPR.G5713' => 'tpr', 'TPR.G9046' => 'tpr', 'TPR.G9061' => 'tpr', 'TWI09G1075' => 'twi', 'TWI12G0806' => 'twi', 'TWI18G0108' => 'twi', 'TWI53G1361' => 'twi', 'TWI73G0185' => 'twi', 'TWI73G0427' => 'twi', 'unitig_37.g12001' => 'ugi', 'unitig_747.g21660' => 'ugi', 'unitig_748.g7232' => 'ugi', 'unitig_748.g7315' => 'ugi', 'unitig_85.g27262' => 'ugi', 'unitig_92.g28220' => 'ugi', 'vmacro02632' => 'vma', 'vmacro08410' => 'vma', 'vmacro08411' => 'vma', 'vmacro15407' => 'vma', 'VMungo0251G3619' => 'vmu', 'VMungo0720G1204' => 'vmu', 'VMungo0720G1918' => 'vmu', 'VMungo0720G2387' => 'vmu', 'VMungo0720G2961' => 'vmu', 'VMungo1215G2154' => 'vmu', 'VMungo1383G2411' => 'vmu', 'Zm00001eb051130' => 'zma', 'Zm00001eb116830' => 'zma', 'Zm00001eb116850' => 'zma', 'Zm00001eb151740' => 'zma', 'Zm00001eb292360' => 'zma', 'Zm00001eb301640' => 'zma' ) $gf_id = 'HOM05D000856' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000856' ) $data_identifier = 'HOM05D000856' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 13, 'ath' => (int) 10, 'atr' => (int) 1, 'acertr' => (int) 8, 'cqu' => (int) 6, 'bca' => (int) 21, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 11, 'car' => (int) 9, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 8, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 5, 'fan' => (int) 16, 'fve' => (int) 6, 'gma' => (int) 11, 'ghi' => (int) 19, 'gra' => (int) 9, 'vvi' => (int) 7, 'han' => (int) 17, 'cav' => (int) 5, 'hma' => (int) 2, 'vpl' => (int) 2, 'sun' => (int) 7, 'lal' => (int) 9, 'lja' => (int) 5, 'lonja' => (int) 9, 'lsa' => (int) 5, 'mes' => (int) 8, 'mpo' => (int) 3, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 10, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 15, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 9, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 9, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 6, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 5, 'spa' => (int) 10, 'tar' => (int) 10, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 11, 'tpr' => (int) 11, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 4, 'vmu' => (int) 7, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb301640' $species_info = array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) $local_species = 'zma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000856', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p00010' => 'bna', 'A03p04160' => 'bna', 'A03p17160' => 'bna', 'A04p23370' => 'bna', 'A05p14860' => 'bna', 'A08p37020' => 'bna', 'A09p08050' => 'bna', 'A09p66800' => 'bna', 'A09p67940' => 'bna', 'A10p02680' => 'bna', 'A10p05320' => 'bna', 'Aa31LG1G20560' => 'aar', 'Aa31LG1G20610' => 'aar', 'Aa31LG1G7810' => 'aar', 'Aa31LG5G3590' => 'aar', 'Aa31LG5G6140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3819' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4683' => 'aag', 'Actinidia04480' => 'ach', 'Actinidia05466' => 'ach', 'Actinidia08445' => 'ach', 'Actinidia21170' => 'ach', 'Actinidia24812' => 'ach', 'Actinidia24951' => 'ach', 'Actinidia40088' => 'ach', 'Ah.02g111660' => 'amhyb', 'Ah.11g048900' => 'amhyb', 'Ah.11g049910' => 'amhyb', 'AL1G13870' => 'aly', 'AL1G13880' => 'aly', 'AL1G16760' => 'aly', 'AL390U10020' => 'aly', 'AL4G25520' => 'aly', 'AL6G19890' => 'aly', 'AL6G19900' => 'aly', 'AL6G19910' => 'aly', 'AL8G40100' => 'aly', 'Aqoxy2G03562' => 'aox', 'Aqoxy5G00316' => 'aox', 'Aqoxy5G00926' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1628KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1H403S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2FU6SJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.882I6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8YRY2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YN1SN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AF70II' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZA8L1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F916KL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHRD8H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KTZ8QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S22EMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8M29T' => 'arhy', 'AT1G04270' => 'ath', 'AT1G04280' => 'ath', 'AT1G06750' => 'ath', 'AT1G33850' => 'ath', 'AT2G30630' => 'ath', 'AT5G09490' => 'ath', 'AT5G09500' => 'ath', 'AT5G09510' => 'ath', 'AT5G43640' => 'ath', 'AT5G63070' => 'ath', 'ATR0605G315' => 'atr', 'Atru.chr11.175' => 'acertr', 'Atru.chr11.653' => 'acertr', 'Atru.chr3.1616' => 'acertr', 'Atru.chr4.2230' => 'acertr', 'Atru.chr4.2232' => 'acertr', 'Atru.chr5.1598' => 'acertr', 'Atru.chr5.1600' => 'acertr', 'Atru.chr5.2188' => 'acertr', 'AUR62008326' => 'cqu', 'AUR62011922' => 'cqu', 'AUR62011924' => 'cqu', 'AUR62021771' => 'cqu', 'AUR62032237' => 'cqu', 'AUR62032240' => 'cqu', 'BcaB01g05572' => 'bca', 'BcaB02g10337' => 'bca', 'BcaB04g19944' => 'bca', 'BcaB05g21548' => 'bca', 'BcaB05g21549' => 'bca', 'BcaB05g23227' => 'bca', 'BcaB06g26256' => 'bca', 'BcaB06g26257' => 'bca', 'BcaB06g28379' => 'bca', 'BcaC02g11159' => 'bca', 'BcaC03g13258' => 'bca', 'BcaC03g13259' => 'bca', 'BcaC05g24456' => 'bca', 'BcaC05g24457' => 'bca', 'BcaC07g36922' => 'bca', 'BcaC07g36923' => 'bca', 'BcaC07g42050' => 'bca', 'BcaC07g42176' => 'bca', 'BcaC07g42195' => 'bca', 'BcaC07g42196' => 'bca', 'BcaNung06674' => 'bca', 'BolC2t06351H' => 'bol', 'BolC2t06352H' => 'bol', 'BolC3t12993H' => 'bol', 'BolC4t23525H' => 'bol', 'BolC4t27475H' => 'bol', 'BolC5t29025H' => 'bol', 'BolC5t29026H' => 'bol', 'BolC8t46898H' => 'bol', 'BolC8t46899H' => 'bol', 'BolC8t52630H' => 'bol', 'BolC8t52765H' => 'bol', 'BolC9t53824H' => 'bol', 'BraA03t09760Z' => 'bra', 'BraA03t10990Z' => 'bra', 'BraA05t20413Z' => 'bra', 'BraA08t35602Z' => 'bra', 'BraA09t36458Z' => 'bra', 'BraA09t42018Z' => 'bra', 'BraA09t42129Z' => 'bra', 'BraA10t42536Z' => 'bra', 'BraA10t42537Z' => 'bra', 'C01p10690' => 'bna', 'C02p03890' => 'bna', 'C02p03900' => 'bna', 'C03p04620' => 'bna', 'C04p19870' => 'bna', 'C04p59670' => 'bna', 'C05p02460' => 'bna', 'C05p02470' => 'bna', 'C08p00980' => 'bna', 'C08p00990' => 'bna', 'C08p51030' => 'bna', 'C08p52360' => 'bna', 'C09p09120' => 'bna', 'CAN.G19.15' => 'can', 'CAN.G251.10' => 'can', 'CAN.G251.9' => 'can', 'CAN.G398.24' => 'can', 'CAN.G410.32' => 'can', 'CAN.G881.2' => 'can', 'CANSAT01G3025' => 'cansat', 'CANSAT78G1211' => 'cansat', 'CANSAT78G1218' => 'cansat', 'CANSAT78G1521' => 'cansat', 'CANSAT78G1670' => 'cansat', 'CARHR003600' => 'chi', 'CARHR003610' => 'chi', 'CARHR006290' => 'chi', 'CARHR006430' => 'chi', 'CARHR124110' => 'chi', 'CARHR203870' => 'chi', 'CARHR203880' => 'chi', 'CARHR203890' => 'chi', 'CARHR276880' => 'chi', 'Carub.0001s0346' => 'cru', 'Carub.0001s0347' => 'cru', 'Carub.0001s0607' => 'cru', 'Carub.0003s2768' => 'cru', 'Carub.0003s2769' => 'cru', 'Carub.0004s1178' => 'cru', 'Carub.0006s0806' => 'cru', 'Carub.0006s0807' => 'cru', 'Carub.0006s0808' => 'cru', 'Carub.0008s0501' => 'cru', 'Carub.0008s2379' => 'cru', 'Ca_08655_v3' => 'car', 'Ca_08922_v3' => 'car', 'Ca_08923_v3' => 'car', 'Ca_09119_v3' => 'car', 'Ca_09703_v3' => 'car', 'Ca_09705_v3' => 'car', 'Ca_09835_v3' => 'car', 'Ca_26403_v3' => 'car', 'Ca_30719_v3' => 'car', 'CBR_g17958' => 'cbr', 'CBR_g40516' => 'cbr', 'Cc00_g05350' => 'ccan', 'Cc01_g18690' => 'ccan', 'Cc03_g04830' => 'ccan', 'Cc03_g04850' => 'ccan', 'CDE02G4469' => 'cde', 'CDE06G0883' => 'cde', 'CDE06G1295' => 'cde', 'CDE06G1390' => 'cde', 'CDE07G0584' => 'cde', 'CDE07G1084' => 'cde', 'CDE08G1259' => 'cde', 'Cfa002341' => 'cfa', 'Cfa024337' => 'cfa', 'Ciclev10004749m.g' => 'ccl', 'Ciclev10006127m.g' => 'ccl', 'Ciclev10019720m.g' => 'ccl', 'Ciclev10022652m.g' => 'ccl', 'CiPaw.01G190400' => 'cil', 'CiPaw.01G190500' => 'cil', 'CiPaw.02G116400' => 'cil', 'CiPaw.02G116500' => 'cil', 'CiPaw.04G183000' => 'cil', 'CiPaw.04G183300' => 'cil', 'ClCG05G004610' => 'cla', 'ClCG05G004620' => 'cla', 'ClCG06G006730' => 'cla', 'ClCG06G006740' => 'cla', 'ClCG11G003690' => 'cla', 'COL.COLO4_08276' => 'col', 'COL.COLO4_08277' => 'col', 'COL.COLO4_15787' => 'col', 'COL.COLO4_15789' => 'col', 'Cpa.g.c44815' => 'cpa', 'Cpa.g.sc52.144' => 'cpa', 'Cpa.g.sc58.46' => 'cpa', 'Cpa.g.sc58.47' => 'cpa', 'Cre08.g360900' => 'cre', 'CsaV3_2G013030' => 'csa', 'CsaV3_2G013050' => 'csa', 'CsaV3_2G015620' => 'csa', 'CsaV3_3G012590' => 'csa', 'CsaV3_3G012600' => 'csa', 'CSS0001641' => 'camsi', 'CSS0008310' => 'camsi', 'CSS0013011' => 'camsi', 'CSS0017147' => 'camsi', 'CSS0022970' => 'camsi', 'CSS0025655' => 'camsi', 'CSS0028665' => 'camsi', 'CSS0029117' => 'camsi', 'CSS0032024' => 'camsi', 'CSS0039681' => 'camsi', 'CSS0046516' => 'camsi', 'CSS0050307' => 'camsi', 'DCAR_005871' => 'dca', 'DCAR_007342' => 'dca', 'DCAR_024228' => 'dca', 'DCAR_027277' => 'dca', 'DCAR_030718' => 'dca', 'Dinv20287' => 'din', 'Dinv22461' => 'din', 'Dinv22464' => 'din', 'Dinv29912' => 'din', 'Dinv29913' => 'din', 'Dinv34580' => 'din', 'Dinv34582' => 'din', 'Dinv44632' => 'din', 'Duzib052G0266' => 'dzi', 'Duzib133G0907' => 'dzi', 'Duzib133G1034' => 'dzi', 'Duzib138G0207' => 'dzi', 'Duzib138G0491' => 'dzi', 'Duzib151G0812' => 'dzi', 'Duzib151G1166' => 'dzi', 'Duzib168G0192' => 'dzi', 'Duzib211G0077' => 'dzi', 'Duzib212G0429' => 'dzi', 'Duzib212G0472' => 'dzi', 'ECA233G2617' => 'eca', 'ECA236G4188' => 'eca', 'ECA240G0936' => 'eca', 'ECA240G1129' => 'eca', 'ECA247G0623' => 'eca', 'EL10Ac5g10451' => 'bvu', 'EL10Ac5g10453' => 'bvu', 'EL10Ac5g10894' => 'bvu', 'Eucgr.H00192' => 'egr', 'Eucgr.H00193' => 'egr', 'Eucgr.H00194' => 'egr', 'Eucgr.J01562' => 'egr', 'Eucgr.K03301' => 'egr', 'FAN02G0632' => 'fan', 'FAN05G5378' => 'fan', 'FAN09G3247' => 'fan', 'FAN12G0435' => 'fan', 'FAN12G2426' => 'fan', 'FAN14G1707' => 'fan', 'FAN14G4725' => 'fan', 'FAN15G2071' => 'fan', 'FAN17G3065' => 'fan', 'FAN19G1376' => 'fan', 'FAN20G0354' => 'fan', 'FAN20G2429' => 'fan', 'FAN20G2658' => 'fan', 'FAN24G2343' => 'fan', 'FAN27G2362' => 'fan', 'FAN28G1765' => 'fan', 'FvH4_1g16020' => 'fve', 'FvH4_2g04890' => 'fve', 'FvH4_2g22270' => 'fve', 'FvH4_4g02630' => 'fve', 'FvH4_4g02640' => 'fve', 'FvH4_6g02650' => 'fve', 'Glyma.02G140600' => 'gma', 'Glyma.03G159900' => 'gma', 'Glyma.05G234800' => 'gma', 'Glyma.07G269600' => 'gma', 'Glyma.08G042300' => 'gma', 'Glyma.10G033500' => 'gma', 'Glyma.10G185200' => 'gma', 'Glyma.17G004300' => 'gma', 'Glyma.19G161900' => 'gma', 'Glyma.20G205100' => 'gma', 'Glyma.20G205200' => 'gma', 'Gohir.A01G139101' => 'ghi', 'Gohir.A02G035600' => 'ghi', 'Gohir.A02G117901' => 'ghi', 'Gohir.A07G210100' => 'ghi', 'Gohir.A07G210200' => 'ghi', 'Gohir.A08G061100' => 'ghi', 'Gohir.A09G223000' => 'ghi', 'Gohir.A09G223100' => 'ghi', 'Gohir.A10G113900' => 'ghi', 'Gohir.A10G114000' => 'ghi', 'Gohir.D02G042300' => 'ghi', 'Gohir.D07G216100' => 'ghi', 'Gohir.D07G216200' => 'ghi', 'Gohir.D08G070400' => 'ghi', 'Gohir.D09G225000' => 'ghi', 'Gohir.D09G225100' => 'ghi', 'Gohir.D10G152300' => 'ghi', 'Gohir.D10G153200' => 'ghi', 'Gohir.D11G133701' => 'ghi', 'Gorai.004G074100' => 'gra', 'Gorai.005G046800' => 'gra', 'Gorai.006G246500' => 'gra', 'Gorai.006G246600' => 'gra', 'Gorai.007G142900' => 'gra', 'Gorai.011G171000' => 'gra', 'Gorai.011G171100' => 'gra', 'Gorai.013G104300' => 'gra', 'Gorai.013G104400' => 'gra', 'GSVIVG01000754001' => 'vvi', 'GSVIVG01000756001' => 'vvi', 'GSVIVG01010903001' => 'vvi', 'GSVIVG01017623001' => 'vvi', 'GSVIVG01018113001' => 'vvi', 'GSVIVG01018116001' => 'vvi', 'GSVIVG01018118001' => 'vvi', 'HanXRQChr03g0076211' => 'han', 'HanXRQChr03g0092431' => 'han', 'HanXRQChr03g0092441' => 'han', 'HanXRQChr03g0092591' => 'han', 'HanXRQChr03g0092671' => 'han', 'HanXRQChr03g0092681' => 'han', 'HanXRQChr03g0092691' => 'han', 'HanXRQChr03g0092701' => 'han', 'HanXRQChr03g0092721' => 'han', 'HanXRQChr03g0092731' => 'han', 'HanXRQChr04g0113681' => 'han', 'HanXRQChr10g0281371' => 'han', 'HanXRQChr11g0337141' => 'han', 'HanXRQChr13g0424521' => 'han', 'HanXRQChr13g0424531' => 'han', 'HanXRQChr13g0424541' => 'han', 'HanXRQChr16g0498221' => 'han', 'Haze_04377' => 'cav', 'Haze_11298' => 'cav', 'Haze_24547' => 'cav', 'Haze_24550' => 'cav', 'Haze_26587' => 'cav', 'Hma1.2p1_0650F.1_g195410' => 'hma', 'Hma1.2p1_0893F.1_g233470' => 'hma', 'HPP92_006508' => 'vpl', 'HPP92_024780' => 'vpl', 'Hund02688' => 'sun', 'Hund09380' => 'sun', 'Hund09381' => 'sun', 'Hund09832' => 'sun', 'Hund09833' => 'sun', 'Hund11351' => 'sun', 'Hund11513' => 'sun', 'Lalb_Chr06g0162591' => 'lal', 'Lalb_Chr06g0162601' => 'lal', 'Lalb_Chr06g0169321' => 'lal', 'Lalb_Chr09g0330951' => 'lal', 'Lalb_Chr16g0387631' => 'lal', 'Lalb_Chr21g0306241' => 'lal', 'Lalb_Chr25g0290051' => 'lal', 'Lalb_Chr25g0290061' => 'lal', 'Lalb_Chr25g0290071' => 'lal', 'Lj1g0003876' => 'lja', 'Lj1P1207T36' => 'lonja', 'Lj2C1156G12' => 'lonja', 'Lj3A793G39' => 'lonja', 'Lj3C580G2' => 'lonja', 'Lj3C780G2' => 'lonja', 'Lj3C780T4' => 'lonja', 'Lj3C793G9' => 'lonja', 'Lj4g0012960' => 'lja', 'Lj5g0021252' => 'lja', 'Lj5g0021484' => 'lja', 'Lj5g0024528' => 'lja', 'Lj6A399T12' => 'lonja', 'Lj6A656G65' => 'lonja', 'Lsat_1_v5_gn_3_125500' => 'lsa', 'Lsat_1_v5_gn_3_125540' => 'lsa', 'Lsat_1_v5_gn_5_72701' => 'lsa', 'Lsat_1_v5_gn_8_91560' => 'lsa', 'Lsat_1_v5_gn_9_9640' => 'lsa', 'Manes.01G200600' => 'mes', 'Manes.01G200700' => 'mes', 'Manes.03G168900' => 'mes', 'Manes.03G169000' => 'mes', 'Manes.05G085801' => 'mes', 'Manes.05G086200' => 'mes', 'Manes.15G036700' => 'mes', 'Manes.15G036900' => 'mes', 'Mapoly0004s0172' => 'mpo', 'Mapoly0023s0001' => 'mpo', 'Mapoly0142s0012' => 'mpo', 'MBI01_g32854_MAGBIO' => 'mbi', 'MBI11_g24427_MAGBIO' => 'mbi', 'MBI11_g47319_MAGBIO' => 'mbi', 'MCO01G433' => 'mco', 'MD00G1187800' => 'mdo', 'MD04G1226500' => 'mdo', 'MD05G1203900' => 'mdo', 'MD10G1191100' => 'mdo', 'MD12G1243500' => 'mdo', 'MD13G1207000' => 'mdo', 'MD13G1207100' => 'mdo', 'MD16G1208600' => 'mdo', 'Medtr1g050352' => 'mtr', 'Medtr1g070385' => 'mtr', 'Medtr1g070450' => 'mtr', 'Medtr1g075200' => 'mtr', 'Medtr1g075250' => 'mtr', 'Medtr1g075260' => 'mtr', 'Medtr1g475250' => 'mtr', 'Medtr4g075450' => 'mtr', 'Medtr7g096300' => 'mtr', 'Medtr8g105110' => 'mtr', 'MELO3C006470.2' => 'cme', 'MELO3C006471.2' => 'cme', 'MELO3C020772.2' => 'cme', 'MELO3C026780.2' => 'cme', 'MELO3C026781.2' => 'cme', 'Migut.D00390' => 'egut', 'Migut.G00435' => 'egut', 'Migut.G00436' => 'egut', 'Migut.G00718' => 'egut', 'MSTRG.21891' => 'ama', 'MSTRG.26910' => 'ama', 'MSTRG.4099' => 'ama', 'MSTRG.9925' => 'ama', 'Nitab4.5_0000165g0010' => 'nta', 'Nitab4.5_0000209g0180' => 'nta', 'Nitab4.5_0000244g0440' => 'nta', 'Nitab4.5_0000525g0220' => 'nta', 'Nitab4.5_0001597g0020' => 'nta', 'Nitab4.5_0001878g0040' => 'nta', 'Nitab4.5_0001878g0060' => 'nta', 'Nitab4.5_0002838g0100' => 'nta', 'Nitab4.5_0002838g0120' => 'nta', 'Nitab4.5_0004798g0030' => 'nta', 'Nitab4.5_0005420g0010' => 'nta', 'Nitab4.5_0005507g0010' => 'nta', 'Nitab4.5_0005574g0020' => 'nta', 'Nitab4.5_0005838g0010' => 'nta', 'Nitab4.5_0010580g0020' => 'nta', 'Nn1g02599' => 'nnu', 'Nn1g02608' => 'nnu', 'Nn3g17742' => 'nnu', 'Nn3g19534' => 'nnu', 'Nn3g19535' => 'nnu', 'Oeu008790.1' => 'oeu', 'Oeu008792.1' => 'oeu', 'Oeu032590.1' => 'oeu', 'Oeu035349.1' => 'oeu', 'Oeu049791.1' => 'oeu', 'Os01g0774500' => 'osa', 'Os03g0628800' => 'osa', 'Os03g0798600' => 'osa', 'Os05g0508800' => 'osa', 'Peaxi162Scf00036g02018' => 'pax', 'Peaxi162Scf00578g00032' => 'pax', 'Peaxi162Scf00578g00317' => 'pax', 'Peaxi162Scf00785g00114' => 'pax', 'Peaxi162Scf00813g00119' => 'pax', 'Peaxi162Scf00906g00227' => 'pax', 'PGR004G0875' => 'pgr', 'PGR004G2424' => 'pgr', 'PGR031G1239' => 'pgr', 'PGR031G2474' => 'pgr', 'PGR044G0423' => 'pgr', 'PGSC0003DMG400001128' => 'stu', 'PGSC0003DMG400007336' => 'stu', 'PGSC0003DMG400016318' => 'stu', 'PGSC0003DMG400016319' => 'stu', 'PGSC0003DMG400018074' => 'stu', 'Phvul.001G157700' => 'pvu', 'Phvul.002G148550' => 'pvu', 'Phvul.002G320200' => 'pvu', 'Phvul.003G089200' => 'pvu', 'Phvul.007G126000' => 'pvu', 'Phvul.007G126100' => 'pvu', 'Phvul.007G178000' => 'pvu', 'Phvul.007G178200' => 'pvu', 'Potri.002G043000' => 'ptr', 'Potri.002G043200' => 'ptr', 'Potri.003G123750' => 'ptr', 'Potri.005G055401' => 'ptr', 'Potri.005G219700' => 'ptr', 'Potri.005G220000' => 'ptr', 'Potri.008G161901' => 'ptr', 'Potri.008G162000' => 'ptr', 'Potri.008G162400' => 'ptr', 'Potri.010G076900' => 'ptr', 'Pp3c12_9180' => 'ppa', 'Pp3c13_19770' => 'ppa', 'Pp3c14_22950' => 'ppa', 'Pp3c16_12160' => 'ppa', 'Pp3c27_7820' => 'ppa', 'Pp3c2_3490' => 'ppa', 'Pp3c3_23700' => 'ppa', 'Pp3c3_36520' => 'ppa', 'Pp3c4_15250' => 'ppa', 'PRCOL_00007002' => 'pco', 'Prupe.1G030600' => 'ppe', 'Prupe.1G030700' => 'ppe', 'Prupe.6G345200' => 'ppe', 'Prupe.8G230300' => 'ppe', 'Prupe.8G230500' => 'ppe', 'Psat3g059600' => 'psa', 'Psat5g200920' => 'psa', 'Psat6g056440' => 'psa', 'Psat6g057360' => 'psa', 'Psat6g134120' => 'psa', 'Psat6g134160' => 'psa', 'Psat7g008640' => 'psa', 'Psat7g185240' => 'psa', 'PSO017G1330' => 'pso', 'PSO063G6097' => 'pso', 'PSO170G0835' => 'pso', 'PSO170G2499' => 'pso', 'PSO210G5058' => 'pso', 'PSO210G6154' => 'pso', 'PSO585G0031' => 'pso', 'PSO832G0264' => 'pso', 'PSO832G4288' => 'pso', 'QL03p027355' => 'qlo', 'QL03p027430' => 'qlo', 'QL04p081380' => 'qlo', 'QL06p015642' => 'qlo', 'QL06p015650' => 'qlo', 'QL06p015686' => 'qlo', 'QL12p042927' => 'qlo', 'QL93p1863_0035' => 'qlo', 'RcHm_v2.0_Chr3g0450581' => 'rch', 'RcHm_v2.0_Chr4g0390371' => 'rch', 'RcHm_v2.0_Chr4g0390381' => 'rch', 'RcHm_v2.0_Chr4g0390491' => 'rch', 'RcHm_v2.0_Chr4g0390501' => 'rch', 'RcHm_v2.0_Chr6g0289231' => 'rch', 'Rhsim04G0190400' => 'rsi', 'Rhsim04G0190500' => 'rsi', 'Rhsim04G0190600' => 'rsi', 'Rhsim13G0031400' => 'rsi', 'Rhsim13G0165600' => 'rsi', 'RhsimUnG0114600' => 'rsi', 'RhsimUnG0114700' => 'rsi', 'Sabra02G0034800' => 'sbr', 'Sabra02G0035100' => 'sbr', 'Sabra05G0168600' => 'sbr', 'Sabra05G0168800' => 'sbr', 'Sabra08G0123700' => 'sbr', 'Sabra10G0031900' => 'sbr', 'Sabra13G0039000' => 'sbr', 'SalBow2G0782' => 'sbo', 'SalBow2G1403' => 'sbo', 'SalBow4G0074' => 'sbo', 'SalBow4G2635' => 'sbo', 'SalBow5G3010' => 'sbo', 'Sc05g0000870' => 'sci', 'Sc05g0000890' => 'sci', 'Sc13g0005000' => 'sci', 'Sc13g0005030' => 'sci', 'Sc19g0003790' => 'sci', 'Sc19g0003800' => 'sci', 'Sed0003467' => 'sed', 'Sed0009355' => 'sed', 'Sed0009894' => 'sed', 'Sed0011972' => 'sed', 'Sed0021483' => 'sed', 'Sed0021750' => 'sed', 'Sed0026279' => 'sed', 'SEGI_05312' => 'sgi', 'SEGI_10112' => 'sgi', 'SEGI_15835' => 'sgi', 'SEGI_30386' => 'sgi', 'SEGI_34122' => 'sgi', 'SEGI_35063' => 'sgi', 'SGA_v2.0_scaffold101G29794' => 'sas', 'SGA_v2.0_scaffold1G00573' => 'sas', 'SGA_v2.0_scaffold79G25637' => 'sas', 'SGA_v2.0_scaffold88G27283' => 'sas', 'SGA_v2.0_scaffold88G27285' => 'sas', 'SGA_v2.0_scaffold88G27331' => 'sas', 'SHI09937' => 'shi', 'SMO119G0302' => 'smo', 'SMO137G0231' => 'smo', 'SMO367G1151' => 'smo', 'Solyc02g082000.3' => 'sly', 'Solyc06g031670.3' => 'sly', 'Solyc06g053810.3' => 'sly', 'Solyc07g025457.1' => 'sly', 'Solyc08g059740.1' => 'sly', 'Solyc08g059750.3' => 'sly', 'Solyc09g083370.3' => 'sly', 'Solyc12g038950.3' => 'sly', 'Sopen02g026630' => 'spe', 'Sopen06g018930' => 'spe', 'Sopen06g018940' => 'spe', 'Sopen08g009460' => 'spe', 'Sopen09g032290' => 'spe', 'Sp1g03080' => 'spa', 'Sp1g03090' => 'spa', 'Sp1g05480' => 'spa', 'Sp2g07860' => 'spa', 'Sp2g08430' => 'spa', 'Sp2g08440' => 'spa', 'Sp2g26200' => 'spa', 'Sp4g13170' => 'spa', 'Sp6g33840' => 'spa', 'SpUn1204_0010' => 'spa', 'TAR365G0908' => 'tar', 'TAR381G1270' => 'tar', 'TAR381G1651' => 'tar', 'TAR625G1131' => 'tar', 'TAR633G0962' => 'tar', 'TAR633G1729' => 'tar', 'TAR633G1864' => 'tar', 'TAR636G0221' => 'tar', 'TAR636G0314' => 'tar', 'TAR636G3202' => 'tar', 'THA.LOC104800805' => 'tha', 'THA.LOC104801096' => 'tha', 'THA.LOC104801555' => 'tha', 'THA.LOC104808491' => 'tha', 'THA.LOC104808595' => 'tha', 'THA.LOC104815985' => 'tha', 'THA.LOC104822250' => 'tha', 'THA.LOC104826071' => 'tha', 'Thecc.01G265200' => 'tca', 'Thecc.01G265300' => 'tca', 'Thecc.01G265700' => 'tca', 'Thecc.03G109100' => 'tca', 'Thecc.04G245900' => 'tca', 'Thecc.04G246000' => 'tca', 'Thhalv10003334m.g' => 'esa', 'Thhalv10005508m.g' => 'esa', 'Thhalv10005643m.g' => 'esa', 'Thhalv10007316m.g' => 'esa', 'Thhalv10009006m.g' => 'esa', 'Thhalv10009309m.g' => 'esa', 'Thhalv10014917m.g' => 'esa', 'Thhalv10014919m.g' => 'esa', 'Thhalv10015393m.g' => 'esa', 'Thhalv10016515m.g' => 'esa', 'Thhalv10029242m.g' => 'esa', 'TPR.G16654' => 'tpr', 'TPR.G20589' => 'tpr', 'TPR.G23029' => 'tpr', 'TPR.G27731' => 'tpr', 'TPR.G28889' => 'tpr', 'TPR.G28899' => 'tpr', 'TPR.G30846' => 'tpr', 'TPR.G5452' => 'tpr', 'TPR.G5713' => 'tpr', 'TPR.G9046' => 'tpr', 'TPR.G9061' => 'tpr', 'TWI09G1075' => 'twi', 'TWI12G0806' => 'twi', 'TWI18G0108' => 'twi', 'TWI53G1361' => 'twi', 'TWI73G0185' => 'twi', 'TWI73G0427' => 'twi', 'unitig_37.g12001' => 'ugi', 'unitig_747.g21660' => 'ugi', 'unitig_748.g7232' => 'ugi', 'unitig_748.g7315' => 'ugi', 'unitig_85.g27262' => 'ugi', 'unitig_92.g28220' => 'ugi', 'vmacro02632' => 'vma', 'vmacro08410' => 'vma', 'vmacro08411' => 'vma', 'vmacro15407' => 'vma', 'VMungo0251G3619' => 'vmu', 'VMungo0720G1204' => 'vmu', 'VMungo0720G1918' => 'vmu', 'VMungo0720G2387' => 'vmu', 'VMungo0720G2961' => 'vmu', 'VMungo1215G2154' => 'vmu', 'VMungo1383G2411' => 'vmu', 'Zm00001eb051130' => 'zma', 'Zm00001eb116830' => 'zma', 'Zm00001eb116850' => 'zma', 'Zm00001eb151740' => 'zma', 'Zm00001eb292360' => 'zma', 'Zm00001eb301640' => 'zma' ), 'gf_id' => 'HOM05D000856', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000856' ), 'data_identifier' => 'HOM05D000856', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000856', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p00010' => 'bna', 'A03p04160' => 'bna', 'A03p17160' => 'bna', 'A04p23370' => 'bna', 'A05p14860' => 'bna', 'A08p37020' => 'bna', 'A09p08050' => 'bna', 'A09p66800' => 'bna', 'A09p67940' => 'bna', 'A10p02680' => 'bna', 'A10p05320' => 'bna', 'Aa31LG1G20560' => 'aar', 'Aa31LG1G20610' => 'aar', 'Aa31LG1G7810' => 'aar', 'Aa31LG5G3590' => 'aar', 'Aa31LG5G6140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3819' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4683' => 'aag', 'Actinidia04480' => 'ach', 'Actinidia05466' => 'ach', 'Actinidia08445' => 'ach', 'Actinidia21170' => 'ach', 'Actinidia24812' => 'ach', 'Actinidia24951' => 'ach', 'Actinidia40088' => 'ach', 'Ah.02g111660' => 'amhyb', 'Ah.11g048900' => 'amhyb', 'Ah.11g049910' => 'amhyb', 'AL1G13870' => 'aly', 'AL1G13880' => 'aly', 'AL1G16760' => 'aly', 'AL390U10020' => 'aly', 'AL4G25520' => 'aly', 'AL6G19890' => 'aly', 'AL6G19900' => 'aly', 'AL6G19910' => 'aly', 'AL8G40100' => 'aly', 'Aqoxy2G03562' => 'aox', 'Aqoxy5G00316' => 'aox', 'Aqoxy5G00926' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1628KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1H403S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2FU6SJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.882I6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8YRY2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YN1SN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AF70II' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZA8L1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F916KL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IHRD8H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KTZ8QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S22EMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8M29T' => 'arhy', 'AT1G04270' => 'ath', 'AT1G04280' => 'ath', 'AT1G06750' => 'ath', 'AT1G33850' => 'ath', 'AT2G30630' => 'ath', 'AT5G09490' => 'ath', 'AT5G09500' => 'ath', 'AT5G09510' => 'ath', 'AT5G43640' => 'ath', 'AT5G63070' => 'ath', 'ATR0605G315' => 'atr', 'Atru.chr11.175' => 'acertr', 'Atru.chr11.653' => 'acertr', 'Atru.chr3.1616' => 'acertr', 'Atru.chr4.2230' => 'acertr', 'Atru.chr4.2232' => 'acertr', 'Atru.chr5.1598' => 'acertr', 'Atru.chr5.1600' => 'acertr', 'Atru.chr5.2188' => 'acertr', 'AUR62008326' => 'cqu', 'AUR62011922' => 'cqu', 'AUR62011924' => 'cqu', 'AUR62021771' => 'cqu', 'AUR62032237' => 'cqu', 'AUR62032240' => 'cqu', 'BcaB01g05572' => 'bca', 'BcaB02g10337' => 'bca', 'BcaB04g19944' => 'bca', 'BcaB05g21548' => 'bca', 'BcaB05g21549' => 'bca', 'BcaB05g23227' => 'bca', 'BcaB06g26256' => 'bca', 'BcaB06g26257' => 'bca', 'BcaB06g28379' => 'bca', 'BcaC02g11159' => 'bca', 'BcaC03g13258' => 'bca', 'BcaC03g13259' => 'bca', 'BcaC05g24456' => 'bca', 'BcaC05g24457' => 'bca', 'BcaC07g36922' => 'bca', 'BcaC07g36923' => 'bca', 'BcaC07g42050' => 'bca', 'BcaC07g42176' => 'bca', 'BcaC07g42195' => 'bca', 'BcaC07g42196' => 'bca', 'BcaNung06674' => 'bca', 'BolC2t06351H' => 'bol', 'BolC2t06352H' => 'bol', 'BolC3t12993H' => 'bol', 'BolC4t23525H' => 'bol', 'BolC4t27475H' => 'bol', 'BolC5t29025H' => 'bol', 'BolC5t29026H' => 'bol', 'BolC8t46898H' => 'bol', 'BolC8t46899H' => 'bol', 'BolC8t52630H' => 'bol', 'BolC8t52765H' => 'bol', 'BolC9t53824H' => 'bol', 'BraA03t09760Z' => 'bra', 'BraA03t10990Z' => 'bra', 'BraA05t20413Z' => 'bra', 'BraA08t35602Z' => 'bra', 'BraA09t36458Z' => 'bra', 'BraA09t42018Z' => 'bra', 'BraA09t42129Z' => 'bra', 'BraA10t42536Z' => 'bra', 'BraA10t42537Z' => 'bra', 'C01p10690' => 'bna', 'C02p03890' => 'bna', 'C02p03900' => 'bna', 'C03p04620' => 'bna', 'C04p19870' => 'bna', 'C04p59670' => 'bna', 'C05p02460' => 'bna', 'C05p02470' => 'bna', 'C08p00980' => 'bna', 'C08p00990' => 'bna', 'C08p51030' => 'bna', 'C08p52360' => 'bna', 'C09p09120' => 'bna', 'CAN.G19.15' => 'can', 'CAN.G251.10' => 'can', 'CAN.G251.9' => 'can', 'CAN.G398.24' => 'can', 'CAN.G410.32' => 'can', 'CAN.G881.2' => 'can', 'CANSAT01G3025' => 'cansat', 'CANSAT78G1211' => 'cansat', 'CANSAT78G1218' => 'cansat', 'CANSAT78G1521' => 'cansat', 'CANSAT78G1670' => 'cansat', 'CARHR003600' => 'chi', 'CARHR003610' => 'chi', 'CARHR006290' => 'chi', 'CARHR006430' => 'chi', 'CARHR124110' => 'chi', 'CARHR203870' => 'chi', 'CARHR203880' => 'chi', 'CARHR203890' => 'chi', 'CARHR276880' => 'chi', 'Carub.0001s0346' => 'cru', 'Carub.0001s0347' => 'cru', 'Carub.0001s0607' => 'cru', 'Carub.0003s2768' => 'cru', 'Carub.0003s2769' => 'cru', 'Carub.0004s1178' => 'cru', 'Carub.0006s0806' => 'cru', 'Carub.0006s0807' => 'cru', 'Carub.0006s0808' => 'cru', 'Carub.0008s0501' => 'cru', 'Carub.0008s2379' => 'cru', 'Ca_08655_v3' => 'car', 'Ca_08922_v3' => 'car', 'Ca_08923_v3' => 'car', 'Ca_09119_v3' => 'car', 'Ca_09703_v3' => 'car', 'Ca_09705_v3' => 'car', 'Ca_09835_v3' => 'car', 'Ca_26403_v3' => 'car', 'Ca_30719_v3' => 'car', 'CBR_g17958' => 'cbr', 'CBR_g40516' => 'cbr', 'Cc00_g05350' => 'ccan', 'Cc01_g18690' => 'ccan', 'Cc03_g04830' => 'ccan', 'Cc03_g04850' => 'ccan', 'CDE02G4469' => 'cde', 'CDE06G0883' => 'cde', 'CDE06G1295' => 'cde', 'CDE06G1390' => 'cde', 'CDE07G0584' => 'cde', 'CDE07G1084' => 'cde', 'CDE08G1259' => 'cde', 'Cfa002341' => 'cfa', 'Cfa024337' => 'cfa', 'Ciclev10004749m.g' => 'ccl', 'Ciclev10006127m.g' => 'ccl', 'Ciclev10019720m.g' => 'ccl', 'Ciclev10022652m.g' => 'ccl', 'CiPaw.01G190400' => 'cil', 'CiPaw.01G190500' => 'cil', 'CiPaw.02G116400' => 'cil', 'CiPaw.02G116500' => 'cil', 'CiPaw.04G183000' => 'cil', 'CiPaw.04G183300' => 'cil', 'ClCG05G004610' => 'cla', 'ClCG05G004620' => 'cla', 'ClCG06G006730' => 'cla', 'ClCG06G006740' => 'cla', 'ClCG11G003690' => 'cla', 'COL.COLO4_08276' => 'col', 'COL.COLO4_08277' => 'col', 'COL.COLO4_15787' => 'col', 'COL.COLO4_15789' => 'col', 'Cpa.g.c44815' => 'cpa', 'Cpa.g.sc52.144' => 'cpa', 'Cpa.g.sc58.46' => 'cpa', 'Cpa.g.sc58.47' => 'cpa', 'Cre08.g360900' => 'cre', 'CsaV3_2G013030' => 'csa', 'CsaV3_2G013050' => 'csa', 'CsaV3_2G015620' => 'csa', 'CsaV3_3G012590' => 'csa', 'CsaV3_3G012600' => 'csa', 'CSS0001641' => 'camsi', 'CSS0008310' => 'camsi', 'CSS0013011' => 'camsi', 'CSS0017147' => 'camsi', 'CSS0022970' => 'camsi', 'CSS0025655' => 'camsi', 'CSS0028665' => 'camsi', 'CSS0029117' => 'camsi', 'CSS0032024' => 'camsi', 'CSS0039681' => 'camsi', 'CSS0046516' => 'camsi', 'CSS0050307' => 'camsi', 'DCAR_005871' => 'dca', 'DCAR_007342' => 'dca', 'DCAR_024228' => 'dca', 'DCAR_027277' => 'dca', 'DCAR_030718' => 'dca', 'Dinv20287' => 'din', 'Dinv22461' => 'din', 'Dinv22464' => 'din', 'Dinv29912' => 'din', 'Dinv29913' => 'din', 'Dinv34580' => 'din', 'Dinv34582' => 'din', 'Dinv44632' => 'din', 'Duzib052G0266' => 'dzi', 'Duzib133G0907' => 'dzi', 'Duzib133G1034' => 'dzi', 'Duzib138G0207' => 'dzi', 'Duzib138G0491' => 'dzi', 'Duzib151G0812' => 'dzi', 'Duzib151G1166' => 'dzi', 'Duzib168G0192' => 'dzi', 'Duzib211G0077' => 'dzi', 'Duzib212G0429' => 'dzi', 'Duzib212G0472' => 'dzi', 'ECA233G2617' => 'eca', 'ECA236G4188' => 'eca', 'ECA240G0936' => 'eca', 'ECA240G1129' => 'eca', 'ECA247G0623' => 'eca', 'EL10Ac5g10451' => 'bvu', 'EL10Ac5g10453' => 'bvu', 'EL10Ac5g10894' => 'bvu', 'Eucgr.H00192' => 'egr', 'Eucgr.H00193' => 'egr', 'Eucgr.H00194' => 'egr', 'Eucgr.J01562' => 'egr', 'Eucgr.K03301' => 'egr', 'FAN02G0632' => 'fan', 'FAN05G5378' => 'fan', 'FAN09G3247' => 'fan', 'FAN12G0435' => 'fan', 'FAN12G2426' => 'fan', 'FAN14G1707' => 'fan', 'FAN14G4725' => 'fan', 'FAN15G2071' => 'fan', 'FAN17G3065' => 'fan', 'FAN19G1376' => 'fan', 'FAN20G0354' => 'fan', 'FAN20G2429' => 'fan', 'FAN20G2658' => 'fan', 'FAN24G2343' => 'fan', 'FAN27G2362' => 'fan', 'FAN28G1765' => 'fan', 'FvH4_1g16020' => 'fve', 'FvH4_2g04890' => 'fve', 'FvH4_2g22270' => 'fve', 'FvH4_4g02630' => 'fve', 'FvH4_4g02640' => 'fve', 'FvH4_6g02650' => 'fve', 'Glyma.02G140600' => 'gma', 'Glyma.03G159900' => 'gma', 'Glyma.05G234800' => 'gma', 'Glyma.07G269600' => 'gma', 'Glyma.08G042300' => 'gma', 'Glyma.10G033500' => 'gma', 'Glyma.10G185200' => 'gma', 'Glyma.17G004300' => 'gma', 'Glyma.19G161900' => 'gma', 'Glyma.20G205100' => 'gma', 'Glyma.20G205200' => 'gma', 'Gohir.A01G139101' => 'ghi', 'Gohir.A02G035600' => 'ghi', 'Gohir.A02G117901' => 'ghi', 'Gohir.A07G210100' => 'ghi', 'Gohir.A07G210200' => 'ghi', 'Gohir.A08G061100' => 'ghi', 'Gohir.A09G223000' => 'ghi', 'Gohir.A09G223100' => 'ghi', 'Gohir.A10G113900' => 'ghi', 'Gohir.A10G114000' => 'ghi', 'Gohir.D02G042300' => 'ghi', 'Gohir.D07G216100' => 'ghi', 'Gohir.D07G216200' => 'ghi', 'Gohir.D08G070400' => 'ghi', 'Gohir.D09G225000' => 'ghi', 'Gohir.D09G225100' => 'ghi', 'Gohir.D10G152300' => 'ghi', 'Gohir.D10G153200' => 'ghi', 'Gohir.D11G133701' => 'ghi', 'Gorai.004G074100' => 'gra', 'Gorai.005G046800' => 'gra', 'Gorai.006G246500' => 'gra', 'Gorai.006G246600' => 'gra', 'Gorai.007G142900' => 'gra', 'Gorai.011G171000' => 'gra', 'Gorai.011G171100' => 'gra', 'Gorai.013G104300' => 'gra', 'Gorai.013G104400' => 'gra', 'GSVIVG01000754001' => 'vvi', 'GSVIVG01000756001' => 'vvi', 'GSVIVG01010903001' => 'vvi', 'GSVIVG01017623001' => 'vvi', 'GSVIVG01018113001' => 'vvi', 'GSVIVG01018116001' => 'vvi', 'GSVIVG01018118001' => 'vvi', 'HanXRQChr03g0076211' => 'han', 'HanXRQChr03g0092431' => 'han', 'HanXRQChr03g0092441' => 'han', 'HanXRQChr03g0092591' => 'han', 'HanXRQChr03g0092671' => 'han', 'HanXRQChr03g0092681' => 'han', 'HanXRQChr03g0092691' => 'han', 'HanXRQChr03g0092701' => 'han', 'HanXRQChr03g0092721' => 'han', 'HanXRQChr03g0092731' => 'han', 'HanXRQChr04g0113681' => 'han', 'HanXRQChr10g0281371' => 'han', 'HanXRQChr11g0337141' => 'han', 'HanXRQChr13g0424521' => 'han', 'HanXRQChr13g0424531' => 'han', 'HanXRQChr13g0424541' => 'han', 'HanXRQChr16g0498221' => 'han', 'Haze_04377' => 'cav', 'Haze_11298' => 'cav', 'Haze_24547' => 'cav', 'Haze_24550' => 'cav', 'Haze_26587' => 'cav', 'Hma1.2p1_0650F.1_g195410' => 'hma', 'Hma1.2p1_0893F.1_g233470' => 'hma', 'HPP92_006508' => 'vpl', 'HPP92_024780' => 'vpl', 'Hund02688' => 'sun', 'Hund09380' => 'sun', 'Hund09381' => 'sun', 'Hund09832' => 'sun', 'Hund09833' => 'sun', 'Hund11351' => 'sun', 'Hund11513' => 'sun', 'Lalb_Chr06g0162591' => 'lal', 'Lalb_Chr06g0162601' => 'lal', 'Lalb_Chr06g0169321' => 'lal', 'Lalb_Chr09g0330951' => 'lal', 'Lalb_Chr16g0387631' => 'lal', 'Lalb_Chr21g0306241' => 'lal', 'Lalb_Chr25g0290051' => 'lal', 'Lalb_Chr25g0290061' => 'lal', 'Lalb_Chr25g0290071' => 'lal', 'Lj1g0003876' => 'lja', 'Lj1P1207T36' => 'lonja', 'Lj2C1156G12' => 'lonja', 'Lj3A793G39' => 'lonja', 'Lj3C580G2' => 'lonja', 'Lj3C780G2' => 'lonja', 'Lj3C780T4' => 'lonja', 'Lj3C793G9' => 'lonja', 'Lj4g0012960' => 'lja', 'Lj5g0021252' => 'lja', 'Lj5g0021484' => 'lja', 'Lj5g0024528' => 'lja', 'Lj6A399T12' => 'lonja', 'Lj6A656G65' => 'lonja', 'Lsat_1_v5_gn_3_125500' => 'lsa', 'Lsat_1_v5_gn_3_125540' => 'lsa', 'Lsat_1_v5_gn_5_72701' => 'lsa', 'Lsat_1_v5_gn_8_91560' => 'lsa', 'Lsat_1_v5_gn_9_9640' => 'lsa', 'Manes.01G200600' => 'mes', 'Manes.01G200700' => 'mes', 'Manes.03G168900' => 'mes', 'Manes.03G169000' => 'mes', 'Manes.05G085801' => 'mes', 'Manes.05G086200' => 'mes', 'Manes.15G036700' => 'mes', 'Manes.15G036900' => 'mes', 'Mapoly0004s0172' => 'mpo', 'Mapoly0023s0001' => 'mpo', 'Mapoly0142s0012' => 'mpo', 'MBI01_g32854_MAGBIO' => 'mbi', 'MBI11_g24427_MAGBIO' => 'mbi', 'MBI11_g47319_MAGBIO' => 'mbi', 'MCO01G433' => 'mco', 'MD00G1187800' => 'mdo', 'MD04G1226500' => 'mdo', 'MD05G1203900' => 'mdo', 'MD10G1191100' => 'mdo', 'MD12G1243500' => 'mdo', 'MD13G1207000' => 'mdo', 'MD13G1207100' => 'mdo', 'MD16G1208600' => 'mdo', 'Medtr1g050352' => 'mtr', 'Medtr1g070385' => 'mtr', 'Medtr1g070450' => 'mtr', 'Medtr1g075200' => 'mtr', 'Medtr1g075250' => 'mtr', 'Medtr1g075260' => 'mtr', 'Medtr1g475250' => 'mtr', 'Medtr4g075450' => 'mtr', 'Medtr7g096300' => 'mtr', 'Medtr8g105110' => 'mtr', 'MELO3C006470.2' => 'cme', 'MELO3C006471.2' => 'cme', 'MELO3C020772.2' => 'cme', 'MELO3C026780.2' => 'cme', 'MELO3C026781.2' => 'cme', 'Migut.D00390' => 'egut', 'Migut.G00435' => 'egut', 'Migut.G00436' => 'egut', 'Migut.G00718' => 'egut', 'MSTRG.21891' => 'ama', 'MSTRG.26910' => 'ama', 'MSTRG.4099' => 'ama', 'MSTRG.9925' => 'ama', 'Nitab4.5_0000165g0010' => 'nta', 'Nitab4.5_0000209g0180' => 'nta', 'Nitab4.5_0000244g0440' => 'nta', 'Nitab4.5_0000525g0220' => 'nta', 'Nitab4.5_0001597g0020' => 'nta', 'Nitab4.5_0001878g0040' => 'nta', 'Nitab4.5_0001878g0060' => 'nta', 'Nitab4.5_0002838g0100' => 'nta', 'Nitab4.5_0002838g0120' => 'nta', 'Nitab4.5_0004798g0030' => 'nta', 'Nitab4.5_0005420g0010' => 'nta', 'Nitab4.5_0005507g0010' => 'nta', 'Nitab4.5_0005574g0020' => 'nta', 'Nitab4.5_0005838g0010' => 'nta', 'Nitab4.5_0010580g0020' => 'nta', 'Nn1g02599' => 'nnu', 'Nn1g02608' => 'nnu', 'Nn3g17742' => 'nnu', 'Nn3g19534' => 'nnu', 'Nn3g19535' => 'nnu', 'Oeu008790.1' => 'oeu', 'Oeu008792.1' => 'oeu', 'Oeu032590.1' => 'oeu', 'Oeu035349.1' => 'oeu', 'Oeu049791.1' => 'oeu', 'Os01g0774500' => 'osa', 'Os03g0628800' => 'osa', 'Os03g0798600' => 'osa', 'Os05g0508800' => 'osa', 'Peaxi162Scf00036g02018' => 'pax', 'Peaxi162Scf00578g00032' => 'pax', 'Peaxi162Scf00578g00317' => 'pax', 'Peaxi162Scf00785g00114' => 'pax', 'Peaxi162Scf00813g00119' => 'pax', 'Peaxi162Scf00906g00227' => 'pax', 'PGR004G0875' => 'pgr', 'PGR004G2424' => 'pgr', 'PGR031G1239' => 'pgr', 'PGR031G2474' => 'pgr', 'PGR044G0423' => 'pgr', 'PGSC0003DMG400001128' => 'stu', 'PGSC0003DMG400007336' => 'stu', 'PGSC0003DMG400016318' => 'stu', 'PGSC0003DMG400016319' => 'stu', 'PGSC0003DMG400018074' => 'stu', 'Phvul.001G157700' => 'pvu', 'Phvul.002G148550' => 'pvu', 'Phvul.002G320200' => 'pvu', 'Phvul.003G089200' => 'pvu', 'Phvul.007G126000' => 'pvu', 'Phvul.007G126100' => 'pvu', 'Phvul.007G178000' => 'pvu', 'Phvul.007G178200' => 'pvu', 'Potri.002G043000' => 'ptr', 'Potri.002G043200' => 'ptr', 'Potri.003G123750' => 'ptr', 'Potri.005G055401' => 'ptr', 'Potri.005G219700' => 'ptr', 'Potri.005G220000' => 'ptr', 'Potri.008G161901' => 'ptr', 'Potri.008G162000' => 'ptr', 'Potri.008G162400' => 'ptr', 'Potri.010G076900' => 'ptr', 'Pp3c12_9180' => 'ppa', 'Pp3c13_19770' => 'ppa', 'Pp3c14_22950' => 'ppa', 'Pp3c16_12160' => 'ppa', 'Pp3c27_7820' => 'ppa', 'Pp3c2_3490' => 'ppa', 'Pp3c3_23700' => 'ppa', 'Pp3c3_36520' => 'ppa', 'Pp3c4_15250' => 'ppa', 'PRCOL_00007002' => 'pco', 'Prupe.1G030600' => 'ppe', 'Prupe.1G030700' => 'ppe', 'Prupe.6G345200' => 'ppe', 'Prupe.8G230300' => 'ppe', 'Prupe.8G230500' => 'ppe', 'Psat3g059600' => 'psa', 'Psat5g200920' => 'psa', 'Psat6g056440' => 'psa', 'Psat6g057360' => 'psa', 'Psat6g134120' => 'psa', 'Psat6g134160' => 'psa', 'Psat7g008640' => 'psa', 'Psat7g185240' => 'psa', 'PSO017G1330' => 'pso', 'PSO063G6097' => 'pso', 'PSO170G0835' => 'pso', 'PSO170G2499' => 'pso', 'PSO210G5058' => 'pso', 'PSO210G6154' => 'pso', 'PSO585G0031' => 'pso', 'PSO832G0264' => 'pso', 'PSO832G4288' => 'pso', 'QL03p027355' => 'qlo', 'QL03p027430' => 'qlo', 'QL04p081380' => 'qlo', 'QL06p015642' => 'qlo', 'QL06p015650' => 'qlo', 'QL06p015686' => 'qlo', 'QL12p042927' => 'qlo', 'QL93p1863_0035' => 'qlo', 'RcHm_v2.0_Chr3g0450581' => 'rch', 'RcHm_v2.0_Chr4g0390371' => 'rch', 'RcHm_v2.0_Chr4g0390381' => 'rch', 'RcHm_v2.0_Chr4g0390491' => 'rch', 'RcHm_v2.0_Chr4g0390501' => 'rch', 'RcHm_v2.0_Chr6g0289231' => 'rch', 'Rhsim04G0190400' => 'rsi', 'Rhsim04G0190500' => 'rsi', 'Rhsim04G0190600' => 'rsi', 'Rhsim13G0031400' => 'rsi', 'Rhsim13G0165600' => 'rsi', 'RhsimUnG0114600' => 'rsi', 'RhsimUnG0114700' => 'rsi', 'Sabra02G0034800' => 'sbr', 'Sabra02G0035100' => 'sbr', 'Sabra05G0168600' => 'sbr', 'Sabra05G0168800' => 'sbr', 'Sabra08G0123700' => 'sbr', 'Sabra10G0031900' => 'sbr', 'Sabra13G0039000' => 'sbr', 'SalBow2G0782' => 'sbo', 'SalBow2G1403' => 'sbo', 'SalBow4G0074' => 'sbo', 'SalBow4G2635' => 'sbo', 'SalBow5G3010' => 'sbo', 'Sc05g0000870' => 'sci', 'Sc05g0000890' => 'sci', 'Sc13g0005000' => 'sci', 'Sc13g0005030' => 'sci', 'Sc19g0003790' => 'sci', 'Sc19g0003800' => 'sci', 'Sed0003467' => 'sed', 'Sed0009355' => 'sed', 'Sed0009894' => 'sed', 'Sed0011972' => 'sed', 'Sed0021483' => 'sed', 'Sed0021750' => 'sed', 'Sed0026279' => 'sed', 'SEGI_05312' => 'sgi', 'SEGI_10112' => 'sgi', 'SEGI_15835' => 'sgi', 'SEGI_30386' => 'sgi', 'SEGI_34122' => 'sgi', 'SEGI_35063' => 'sgi', 'SGA_v2.0_scaffold101G29794' => 'sas', 'SGA_v2.0_scaffold1G00573' => 'sas', 'SGA_v2.0_scaffold79G25637' => 'sas', 'SGA_v2.0_scaffold88G27283' => 'sas', 'SGA_v2.0_scaffold88G27285' => 'sas', 'SGA_v2.0_scaffold88G27331' => 'sas', 'SHI09937' => 'shi', 'SMO119G0302' => 'smo', 'SMO137G0231' => 'smo', 'SMO367G1151' => 'smo', 'Solyc02g082000.3' => 'sly', 'Solyc06g031670.3' => 'sly', 'Solyc06g053810.3' => 'sly', 'Solyc07g025457.1' => 'sly', 'Solyc08g059740.1' => 'sly', 'Solyc08g059750.3' => 'sly', 'Solyc09g083370.3' => 'sly', 'Solyc12g038950.3' => 'sly', 'Sopen02g026630' => 'spe', 'Sopen06g018930' => 'spe', 'Sopen06g018940' => 'spe', 'Sopen08g009460' => 'spe', 'Sopen09g032290' => 'spe', 'Sp1g03080' => 'spa', 'Sp1g03090' => 'spa', 'Sp1g05480' => 'spa', 'Sp2g07860' => 'spa', 'Sp2g08430' => 'spa', 'Sp2g08440' => 'spa', 'Sp2g26200' => 'spa', 'Sp4g13170' => 'spa', 'Sp6g33840' => 'spa', 'SpUn1204_0010' => 'spa', 'TAR365G0908' => 'tar', 'TAR381G1270' => 'tar', 'TAR381G1651' => 'tar', 'TAR625G1131' => 'tar', 'TAR633G0962' => 'tar', 'TAR633G1729' => 'tar', 'TAR633G1864' => 'tar', 'TAR636G0221' => 'tar', 'TAR636G0314' => 'tar', 'TAR636G3202' => 'tar', 'THA.LOC104800805' => 'tha', 'THA.LOC104801096' => 'tha', 'THA.LOC104801555' => 'tha', 'THA.LOC104808491' => 'tha', 'THA.LOC104808595' => 'tha', 'THA.LOC104815985' => 'tha', 'THA.LOC104822250' => 'tha', 'THA.LOC104826071' => 'tha', 'Thecc.01G265200' => 'tca', 'Thecc.01G265300' => 'tca', 'Thecc.01G265700' => 'tca', 'Thecc.03G109100' => 'tca', 'Thecc.04G245900' => 'tca', 'Thecc.04G246000' => 'tca', 'Thhalv10003334m.g' => 'esa', 'Thhalv10005508m.g' => 'esa', 'Thhalv10005643m.g' => 'esa', 'Thhalv10007316m.g' => 'esa', 'Thhalv10009006m.g' => 'esa', 'Thhalv10009309m.g' => 'esa', 'Thhalv10014917m.g' => 'esa', 'Thhalv10014919m.g' => 'esa', 'Thhalv10015393m.g' => 'esa', 'Thhalv10016515m.g' => 'esa', 'Thhalv10029242m.g' => 'esa', 'TPR.G16654' => 'tpr', 'TPR.G20589' => 'tpr', 'TPR.G23029' => 'tpr', 'TPR.G27731' => 'tpr', 'TPR.G28889' => 'tpr', 'TPR.G28899' => 'tpr', 'TPR.G30846' => 'tpr', 'TPR.G5452' => 'tpr', 'TPR.G5713' => 'tpr', 'TPR.G9046' => 'tpr', 'TPR.G9061' => 'tpr', 'TWI09G1075' => 'twi', 'TWI12G0806' => 'twi', 'TWI18G0108' => 'twi', 'TWI53G1361' => 'twi', 'TWI73G0185' => 'twi', 'TWI73G0427' => 'twi', 'unitig_37.g12001' => 'ugi', 'unitig_747.g21660' => 'ugi', 'unitig_748.g7232' => 'ugi', 'unitig_748.g7315' => 'ugi', 'unitig_85.g27262' => 'ugi', 'unitig_92.g28220' => 'ugi', 'vmacro02632' => 'vma', 'vmacro08410' => 'vma', 'vmacro08411' => 'vma', 'vmacro15407' => 'vma', 'VMungo0251G3619' => 'vmu', 'VMungo0720G1204' => 'vmu', 'VMungo0720G1918' => 'vmu', 'VMungo0720G2387' => 'vmu', 'VMungo0720G2961' => 'vmu', 'VMungo1215G2154' => 'vmu', 'VMungo1383G2411' => 'vmu', 'Zm00001eb051130' => 'zma', 'Zm00001eb116830' => 'zma', 'Zm00001eb116850' => 'zma', 'Zm00001eb151740' => 'zma', 'Zm00001eb292360' => 'zma', 'Zm00001eb301640' => 'zma' ) $gf_id = 'HOM05D000856' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000856' ) $data_identifier = 'HOM05D000856' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 13, 'ath' => (int) 10, 'atr' => (int) 1, 'acertr' => (int) 8, 'cqu' => (int) 6, 'bca' => (int) 21, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 11, 'car' => (int) 9, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 8, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 5, 'fan' => (int) 16, 'fve' => (int) 6, 'gma' => (int) 11, 'ghi' => (int) 19, 'gra' => (int) 9, 'vvi' => (int) 7, 'han' => (int) 17, 'cav' => (int) 5, 'hma' => (int) 2, 'vpl' => (int) 2, 'sun' => (int) 7, 'lal' => (int) 9, 'lja' => (int) 5, 'lonja' => (int) 9, 'lsa' => (int) 5, 'mes' => (int) 8, 'mpo' => (int) 3, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 10, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 15, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 9, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 9, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 6, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 5, 'spa' => (int) 10, 'tar' => (int) 10, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 11, 'tpr' => (int) 11, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 4, 'vmu' => (int) 7, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb301640' $species_info = array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) $local_species = 'zma' $disabled = '' $selected = '' $num_hits = (int) 1